HHsearch alignment for GI: 254780766 and conserved domain: cd03259
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00014 Score=49.09 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=29.3
Q ss_pred ECCCCHHHEEEECCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 2232545536732798-79998689986444899999
Q gi|254780766|r 13 SEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAIS 48 (375)
Q Consensus 13 ~nFR~~~~~~i~f~~~-~n~i~G~NG~GKT~iLEAI~ 48 (375)
T Consensus 11 g~~~al~~vs~~i~~Gei~~iiGpnGaGKSTl~~~i~ 47 (213)
T cd03259 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred CCEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 9999984617798899899999999973999999997