HHsearch alignment for GI: 254780766 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.40 E-value=0.00014 Score=49.09 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=27.4
Q ss_pred CHHHEEEECCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 545536732798-79998689986444899999
Q gi|254780766|r 17 NYASLRLVFDAQ-HTIFVGDNGVGKTNILEAIS 48 (375)
Q Consensus 17 ~~~~~~i~f~~~-~n~i~G~NG~GKT~iLEAI~ 48 (375)
T Consensus 20 al~~vs~~i~~Gei~gllG~NGaGKSTllk~i~ 52 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 872627898598299999999984999999997