HHsearch alignment for GI: 254780766 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.14 E-value=0.00047 Score=45.67 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=22.3
Q ss_pred HHHEEEECCCC-EEEEECCCCCCHHHHH
Q ss_conf 45536732798-7999868998644489
Q gi|254780766|r 18 YASLRLVFDAQ-HTIFVGDNGVGKTNIL 44 (375)
Q Consensus 18 ~~~~~i~f~~~-~n~i~G~NG~GKT~iL 44 (375)
T Consensus 11 L~~Vsl~i~~Ge~~aIvG~nGsGKSTL~ 38 (226)
T cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred CCCEEEEECCCCEEEEECCCCCHHHHHH
T ss_conf 5674899859989999878996098983