HHsearch alignment for GI: 254780766 and conserved domain: cd03271

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.32  E-value=0.00028  Score=47.17  Aligned_cols=32  Identities=16%  Similarity=0.315  Sum_probs=24.9

Q ss_pred             HHHEEEECCC-CEEEEECCCCCCHHHHHHHHHH
Q ss_conf             4553673279-8799986899864448999999
Q gi|254780766|r   18 YASLRLVFDA-QHTIFVGDNGVGKTNILEAISF   49 (375)
Q Consensus        18 ~~~~~i~f~~-~~n~i~G~NG~GKT~iLEAI~~   49 (375)
T Consensus        11 L~~vsl~i~~G~~~aIiG~sGsGKSTLl~~~L~   43 (261)
T cd03271          11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLY   43 (261)
T ss_pred             CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             778588988999999987999869999999988