HHsearch alignment for GI: 254780766 and conserved domain: cd03274
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=5.4e-21 Score=156.20 Aligned_cols=198 Identities=20% Similarity=0.332 Sum_probs=127.4
Q ss_pred EEEEEEEEECCCCHH-HEEE-ECCCCEEEEECCCCCCHHHHHHHHHHHCCC--CCCCCCCHHHHHHCCCCCEEEEEEEEC
Q ss_conf 189999992232545-5367-327987999868998644489999997288--666678736887489832058988862
Q gi|254780766|r 5 IKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYADVTRIGSPSFFSTFARVE 80 (375)
Q Consensus 5 M~i~~l~i~nFR~~~-~~~i-~f~~~~n~i~G~NG~GKT~iLEAI~~l~~g--ksfR~~~~~~li~~~~~~~~~~~~~~~ 80 (375)
T Consensus 1 m~Ik~i~l~gFKSf~~~~~i~pf~~~~t~IvGpNGsGKSNiiDAi~fvlG~~a~~lR~~~l~dlI~nS~~~~~~~~~~V~ 80 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVE 80 (212)
T ss_pred CEEEEEEECCCCCCCCCEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCCCCCCEEEEE
T ss_conf 94889998782157898773257999549999998864888999999972327666551257751477899998747999
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 85320026675300246633321125774333210123334520210011001268723412101000135846778887
Q gi|254780766|r 81 GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 (375)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~k~~~~n~~~~~~~~~l~~~l~~v~~~p~~~~li~~~p~~RR~flD~~i~~~~~~y~~~l~ 160 (375)
T Consensus 81 ---------v~F~~------------------------------------------------i~d~~------------- 90 (212)
T cd03274 81 ---------VHFQE------------------------------------------------IIDKP------------- 90 (212)
T ss_pred ---------EEHHH------------------------------------------------HHCCH-------------
T ss_conf ---------98262------------------------------------------------23542-------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 7776666679886305654321--00245653279999999999999999999999985316430112201566676558
Q gi|254780766|r 161 DFERLMRGRNRLLTEGYFDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 (375)
Q Consensus 161 ~y~K~LkqRN~lLk~~~~d~~~--l~~~~~qla~~~~~I~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (375)
T Consensus 91 ----~-------l~~~gid~~~~rflilqgev----e~i--------a~m------------------------------ 117 (212)
T cd03274 91 ----L-------LKSKGIDLDHNRFLILQGEV----EQI--------AQM------------------------------ 117 (212)
T ss_pred ----H-------HCCCCEEEECCCEEEEECCH----HHH--------HHC------------------------------
T ss_conf ----1-------04676133125269983405----777--------757------------------------------
Q ss_pred CHHHHHHHHHHHHHHCCCHHHCCEEECCCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 96788887654553111000000000257320011001245510233122058999999999999999998708997899
Q gi|254780766|r 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318 (375)
Q Consensus 239 ~~~~~~e~~~~~L~~~~~~d~~~~~t~~Gphr~d~~~~~~~~~~~~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilL 318 (375)
T Consensus 118 -----------------------------PgK~-------~k--~is~LSGGEKsLtAlALlFAi~-----~~kPsPFyv 154 (212)
T cd03274 118 -----------------------------PKKS-------WK--NISNLSGGEKTLSSLALVFALH-----HYKPTPLYV 154 (212)
T ss_pred -----------------------------CCHH-------HH--HHHHCCCHHHHHHHHHHHHHHH-----CCCCCCEEE
T ss_conf -----------------------------6413-------34--4656275189999999999996-----428995589
Q ss_pred EECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCEEEEEEC
Q ss_conf 80122015989999999997417--980999806967854321260079972
Q gi|254780766|r 319 LDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRIS 368 (375)
Q Consensus 319 iDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~~~~~i~ 368 (375)
T Consensus 155 LDEVDAALD~~Nv~r~a~~ike~s~~aQFIVIThr~~tme~AD~L~GV~~~~ 206 (212)
T cd03274 155 MDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYKTN 206 (212)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHEEEEEEEC
T ss_conf 7356424678889999999998477976999985889998515179899737