HHsearch alignment for GI: 254780766 and conserved domain: cd03274

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87  E-value=5.4e-21  Score=156.20  Aligned_cols=198  Identities=20%  Similarity=0.332  Sum_probs=127.4

Q ss_pred             EEEEEEEEECCCCHH-HEEE-ECCCCEEEEECCCCCCHHHHHHHHHHHCCC--CCCCCCCHHHHHHCCCCCEEEEEEEEC
Q ss_conf             189999992232545-5367-327987999868998644489999997288--666678736887489832058988862
Q gi|254780766|r    5 IKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYADVTRIGSPSFFSTFARVE   80 (375)
Q Consensus         5 M~i~~l~i~nFR~~~-~~~i-~f~~~~n~i~G~NG~GKT~iLEAI~~l~~g--ksfR~~~~~~li~~~~~~~~~~~~~~~   80 (375)
T Consensus         1 m~Ik~i~l~gFKSf~~~~~i~pf~~~~t~IvGpNGsGKSNiiDAi~fvlG~~a~~lR~~~l~dlI~nS~~~~~~~~~~V~   80 (212)
T cd03274           1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVE   80 (212)
T ss_pred             CEEEEEEECCCCCCCCCEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCCCCCCEEEEE
T ss_conf             94889998782157898773257999549999998864888999999972327666551257751477899998747999


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             85320026675300246633321125774333210123334520210011001268723412101000135846778887
Q gi|254780766|r   81 GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI  160 (375)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~k~~~~n~~~~~~~~~l~~~l~~v~~~p~~~~li~~~p~~RR~flD~~i~~~~~~y~~~l~  160 (375)
T Consensus        81 ---------v~F~~------------------------------------------------i~d~~-------------   90 (212)
T cd03274          81 ---------VHFQE------------------------------------------------IIDKP-------------   90 (212)
T ss_pred             ---------EEHHH------------------------------------------------HHCCH-------------
T ss_conf             ---------98262------------------------------------------------23542-------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf             7776666679886305654321--00245653279999999999999999999999985316430112201566676558
Q gi|254780766|r  161 DFERLMRGRNRLLTEGYFDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ  238 (375)
Q Consensus       161 ~y~K~LkqRN~lLk~~~~d~~~--l~~~~~qla~~~~~I~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  238 (375)
T Consensus        91 ----~-------l~~~gid~~~~rflilqgev----e~i--------a~m------------------------------  117 (212)
T cd03274          91 ----L-------LKSKGIDLDHNRFLILQGEV----EQI--------AQM------------------------------  117 (212)
T ss_pred             ----H-------HCCCCEEEECCCEEEEECCH----HHH--------HHC------------------------------
T ss_conf             ----1-------04676133125269983405----777--------757------------------------------


Q ss_pred             CHHHHHHHHHHHHHHCCCHHHCCEEECCCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             96788887654553111000000000257320011001245510233122058999999999999999998708997899
Q gi|254780766|r  239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL  318 (375)
Q Consensus       239 ~~~~~~e~~~~~L~~~~~~d~~~~~t~~Gphr~d~~~~~~~~~~~~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilL  318 (375)
T Consensus       118 -----------------------------PgK~-------~k--~is~LSGGEKsLtAlALlFAi~-----~~kPsPFyv  154 (212)
T cd03274         118 -----------------------------PKKS-------WK--NISNLSGGEKTLSSLALVFALH-----HYKPTPLYV  154 (212)
T ss_pred             -----------------------------CCHH-------HH--HHHHCCCHHHHHHHHHHHHHHH-----CCCCCCEEE
T ss_conf             -----------------------------6413-------34--4656275189999999999996-----428995589


Q ss_pred             EECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCEEEEEEC
Q ss_conf             80122015989999999997417--980999806967854321260079972
Q gi|254780766|r  319 LDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRIS  368 (375)
Q Consensus       319 iDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~~~~~i~  368 (375)
T Consensus       155 LDEVDAALD~~Nv~r~a~~ike~s~~aQFIVIThr~~tme~AD~L~GV~~~~  206 (212)
T cd03274         155 MDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYKTN  206 (212)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHEEEEEEEC
T ss_conf             7356424678889999999998477976999985889998515179899737