HHsearch alignment for GI: 254780766 and conserved domain: cd03278

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.73  E-value=1.9e-16  Score=126.58  Aligned_cols=83  Identities=18%  Similarity=0.300  Sum_probs=63.4

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCE
Q ss_conf             312205899999999999999999870899789980122015989999999997417--980999806967854321260
Q gi|254780766|r  285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETA  362 (375)
Q Consensus       285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~  362 (375)
T Consensus       112 ~~LSGGqkQRvAiAr~~A~~~-----~~p~~iliLDEPTs~LD~~~~~~i~~~l~~l~~~~t~IiITH~~~~i~~-AD~I  185 (197)
T cd03278         112 SLLSGGEKALTALALLFAIFR-----VRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA-ADRL  185 (197)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH-----CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH-CCEE
T ss_conf             438878999999999999983-----4999789971785538989999999999998569989999849999985-8999


Q ss_pred             EEEEECCCEEE
Q ss_conf             07997289689
Q gi|254780766|r  363 KFMRISNHQAL  373 (375)
Q Consensus       363 ~~~~i~~g~~~  373 (375)
T Consensus       186 i~v~m~~~~~~  196 (197)
T cd03278         186 YGVTMQESGVS  196 (197)
T ss_pred             EEEEECCCCCC
T ss_conf             99983799879