HHsearch alignment for GI: 254780766 and conserved domain: cd03278
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.73 E-value=1.9e-16 Score=126.58 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=63.4
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCE
Q ss_conf 312205899999999999999999870899789980122015989999999997417--980999806967854321260
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETA 362 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~ 362 (375)
T Consensus 112 ~~LSGGqkQRvAiAr~~A~~~-----~~p~~iliLDEPTs~LD~~~~~~i~~~l~~l~~~~t~IiITH~~~~i~~-AD~I 185 (197)
T cd03278 112 SLLSGGEKALTALALLFAIFR-----VRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA-ADRL 185 (197)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-----CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH-CCEE
T ss_conf 438878999999999999983-----4999789971785538989999999999998569989999849999985-8999
Q ss_pred EEEEECCCEEE
Q ss_conf 07997289689
Q gi|254780766|r 363 KFMRISNHQAL 373 (375)
Q Consensus 363 ~~~~i~~g~~~ 373 (375)
T Consensus 186 i~v~m~~~~~~ 196 (197)
T cd03278 186 YGVTMQESGVS 196 (197)
T ss_pred EEEEECCCCCC
T ss_conf 99983799879