HHsearch alignment for GI: 254780766 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00047 Score=45.64 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=22.8
Q ss_pred EEEECCCC-EEEEECCCCCCHHHHHHHHHH
Q ss_conf 36732798-799986899864448999999
Q gi|254780766|r 21 LRLVFDAQ-HTIFVGDNGVGKTNILEAISF 49 (375)
Q Consensus 21 ~~i~f~~~-~n~i~G~NG~GKT~iLEAI~~ 49 (375)
T Consensus 17 i~l~i~~Ge~~~ilGpSGsGKSTLl~li~G 46 (211)
T cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 788988998999999999559999999976