HHsearch alignment for GI: 254780766 and conserved domain: pfam02463
>pfam02463 SMC_N RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Probab=99.21 E-value=5.7e-09 Score=77.75 Aligned_cols=91 Identities=20% Similarity=0.310 Sum_probs=70.6
Q ss_pred CCCCCCC-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECC
Q ss_conf 0124551-023312205899999999999999999870899789980122015989999999997417--9809998069
Q gi|254780766|r 275 VDYCDKA-ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTD 351 (375)
Q Consensus 275 ~~~~~~~-~~~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~ 351 (375)
T Consensus 1066 ~~ppgK~~~~l~~LSGGEKtL~ALaLlFAi~~-----~~PaPFyiLDEIDAaLD~~Nv~~ia~~ik~~s~~sQFIvIS~r 1140 (1162)
T pfam02463 1066 ARPPGKGVKNLDNLSGGEKTLVALALIFAIQK-----YRPAPFYLLDEIDAALDDQNVSRVANYLKELSKNAQFIVISLR 1140 (1162)
T ss_pred EECCCCCCCCHHHHCHHHHHHHHHHHHHHHHH-----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 98948968896884878899999999999986-----2898378754866366699999999999974999989998607
Q ss_pred HHHHHHHHCCEEEEEECCC
Q ss_conf 6785432126007997289
Q gi|254780766|r 352 KSVFDSLNETAKFMRISNH 370 (375)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~g 370 (375)
T Consensus 1141 ~~~~~~Ad~L~GVtm~e~G 1159 (1162)
T pfam02463 1141 EEMLEKADRLVGVYMVENG 1159 (1162)
T ss_pred HHHHHHHHHEEEEEECCCC
T ss_conf 8999872375887878999