BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] (375 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] gi|254040443|gb|ACT57239.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/375 (100%), Positives = 375/375 (100%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS Sbjct: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL Sbjct: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS Sbjct: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF Sbjct: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF Sbjct: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE Sbjct: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 Query: 361 TAKFMRISNHQALCI 375 TAKFMRISNHQALCI Sbjct: 361 TAKFMRISNHQALCI 375 >gi|315121983|ref|YP_004062472.1| recombination protein F [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495385|gb|ADR51984.1| recombination protein F [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 375 Score = 634 bits (1634), Expect = e-180, Method: Compositional matrix adjust. Identities = 303/373 (81%), Positives = 342/373 (91%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M N+IKIK LN+SEFRNY SLRLVFD+Q TIFVGDNG GKTNILEAIS LSPGRG RRAS Sbjct: 1 MINKIKIKRLNVSEFRNYVSLRLVFDSQQTIFVGDNGAGKTNILEAISLLSPGRGLRRAS 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y+DVTRIGS S FSTFA VEGM+GLA+ISIKLE++DDRS+RCL+INDV IRVVDELN HL Sbjct: 61 YSDVTRIGSLSLFSTFACVEGMDGLAEISIKLESKDDRSIRCLRINDVAIRVVDELNSHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+SWLVPSMDRIFSG S ERRRFLDRMVF+IDPRHRRR+IDFERLMRGRNRLL+EG FD Sbjct: 121 RVSWLVPSMDRIFSGPSTERRRFLDRMVFSIDPRHRRRIIDFERLMRGRNRLLSEGCFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SWCSSIE+QMA LGV+I+IARV+MI+ LSSL+ EY+QKENFPH++L+LTGFLDGK +QSF Sbjct: 181 SWCSSIESQMAGLGVEIDIARVKMIDELSSLMAEYIQKENFPHVELNLTGFLDGKLNQSF 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 LK+EY K LFDGR++DS++RRTLIGPHRSDL+VDYCDK I I HGSTGEQKVVLVGIF Sbjct: 241 LELKQEYVKILFDGRRIDSIARRTLIGPHRSDLVVDYCDKDIKIVHGSTGEQKVVLVGIF 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARLISNTTGFAPILLLDEISAHLDE +RNALFRIV+DIGSQIF+TGTD+S+F SL++ Sbjct: 301 LAHARLISNTTGFAPILLLDEISAHLDEGRRNALFRIVSDIGSQIFITGTDRSMFSSLSD 360 Query: 361 TAKFMRISNHQAL 373 TA FMRI+NHQA Sbjct: 361 TATFMRIANHQAF 373 >gi|222084353|ref|YP_002542882.1| DNA replication and repair protein [Agrobacterium radiobacter K84] gi|254790457|sp|B9JGW1|RECF_AGRRK RecName: Full=DNA replication and repair protein recF gi|221721801|gb|ACM24957.1| DNA replication and repair protein [Agrobacterium radiobacter K84] Length = 375 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/369 (51%), Positives = 258/369 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ I L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVFISRLKLTDFRNYAAAALTLDERHVVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+ +P+ FS FA +EGME +I ++T D+ + R L+IN + VDEL HL Sbjct: 61 YADVVRVAAPNGFSIFAELEGMEDTVEIGTGVDTSDETTARKLRINGTPAKTVDELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S ERRRFLDR+V ++DP H RR DFER MR RNRLL+E FD Sbjct: 121 RVLWLTPAMDGLFTGGSSERRRFLDRLVLSLDPAHGRRASDFERAMRSRNRLLSESRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GFLDG+FD+ Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIAETREATPFPSAALELSGFLDGQFDRPA 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++ YA L +GR D+ + RTL GPHR+DL+V + +K + STGEQK +LVG+ Sbjct: 241 LDLEDAYAGMLREGRYRDAAAGRTLDGPHRTDLLVRHREKDMEAERCSTGEQKALLVGLI 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG AP+LLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L E Sbjct: 301 LAHARLVGNLTGHAPVLLLDEIAAHLDEGRRAALFDLIDRLGGQAFMTGTDRAMFSALGE 360 Query: 361 TAKFMRISN 369 A+F +++ Sbjct: 361 RAQFFTVAH 369 >gi|116249915|ref|YP_765753.1| recombination protein F [Rhizobium leguminosarum bv. viciae 3841] gi|123262032|sp|Q1MN15|RECF_RHIL3 RecName: Full=DNA replication and repair protein recF gi|115254563|emb|CAK05637.1| putative DNA replication and repair protein [Rhizobium leguminosarum bv. viciae 3841] Length = 374 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 184/369 (49%), Positives = 257/369 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAAALALDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +ET ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETGEETTARKLRINGTTAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRETSPFPSASLQLSGFMDGQFSRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+++YA L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ Sbjct: 241 VDLEDDYAAMLAESRYRDAGAGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRAMFSALGD 360 Query: 361 TAKFMRISN 369 A+F +++ Sbjct: 361 KAQFFTVAD 369 >gi|241207093|ref|YP_002978189.1| recombination protein F [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860983|gb|ACS58650.1| DNA replication and repair protein RecF [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 374 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 185/369 (50%), Positives = 257/369 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAAALTLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +ET ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETSEETTARRLRINGTTAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRESSPFPSAALQLSGFMDGQFSRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+++YA L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ Sbjct: 241 VDLEDDYAAMLAESRYRDAGAGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQSFMTGTDRAMFAALGD 360 Query: 361 TAKFMRISN 369 A+F +S+ Sbjct: 361 RAQFFTVSD 369 >gi|190889810|ref|YP_001976352.1| DNA replication and repair protein [Rhizobium etli CIAT 652] gi|226737822|sp|B3PXG8|RECF_RHIE6 RecName: Full=DNA replication and repair protein recF gi|190695089|gb|ACE89174.1| DNA replication and repair protein [Rhizobium etli CIAT 652] Length = 374 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 183/369 (49%), Positives = 257/369 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA++ L D +H + G+NG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +E ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTTRKLRINGTPAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++EYA L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ Sbjct: 241 VDLEDEYAAMLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALAD 360 Query: 361 TAKFMRISN 369 A+F +++ Sbjct: 361 RAQFFTVAD 369 >gi|209551663|ref|YP_002283580.1| recombination protein F [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226737823|sp|B5ZWP8|RECF_RHILW RecName: Full=DNA replication and repair protein recF gi|209537419|gb|ACI57354.1| DNA replication and repair protein RecF [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 374 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 184/369 (49%), Positives = 256/369 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAAALDLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +ET ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIETGEETTARRLRINGTQAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRETSPFPSASLQLSGFMDGQFTRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++EYA L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ Sbjct: 241 VDLEDEYAAMLSESRYRDAGAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRAMFSALGD 360 Query: 361 TAKFMRISN 369 A+ +++ Sbjct: 361 RAQVFTVAD 369 >gi|86355801|ref|YP_467693.1| recombination protein F [Rhizobium etli CFN 42] gi|123738428|sp|Q2KDX0|RECF_RHIEC RecName: Full=DNA replication and repair protein recF gi|86279903|gb|ABC88966.1| DNA replication and repair protein [Rhizobium etli CFN 42] Length = 374 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 181/369 (49%), Positives = 257/369 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAASLSLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +E ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTARRLRINGTPAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL+P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL +G FD Sbjct: 121 RLLWLIPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDDGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ L E ++ FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLTEETLESSPFPSASLQLSGFMDGQFSRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+++Y L + R D+ + RTL GPHR+DL+V + +KA+ A STGEQK +LVG+ Sbjct: 241 VDLEDDYRVMLAESRYRDAGAGRTLEGPHRTDLVVHHREKAMEAARCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE++R ALF I+ +G Q FMTGTD+ +F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDENRRAALFDIIDGLGGQAFMTGTDRGMFTALGD 360 Query: 361 TAKFMRISN 369 A+F +++ Sbjct: 361 RAQFFTVAD 369 >gi|218515494|ref|ZP_03512334.1| recombination protein F [Rhizobium etli 8C-3] Length = 367 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 182/362 (50%), Positives = 253/362 (69%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +++FRNYA++ L D +H + G+NG GKTN++EA+S LSPGRG RRA+Y D+TR+G+ Sbjct: 3 LKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAAYGDITRVGA 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 FS FA ++GMEG +I +E ++ + R L+IN + DEL HLR+ WL P+M Sbjct: 63 AGGFSIFAALDGMEGEVEIGTGIEAGEETTTRKLRINGKPAKTADELTDHLRLLWLTPAM 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 D +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD SW + IE Q Sbjct: 123 DGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDPSWLAGIEEQ 182 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + L++EYA Sbjct: 183 MASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPSVDLEDEYAA 242 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ LAHARL+ N Sbjct: 243 MLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGN 302 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + A+F +++ Sbjct: 303 LTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALADRAQFFTVAD 362 Query: 370 HQ 371 + Sbjct: 363 GK 364 >gi|327192780|gb|EGE59709.1| DNA replication and repair protein [Rhizobium etli CNPAF512] Length = 442 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 182/369 (49%), Positives = 257/369 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA++ L D +H + G+NG GKTN++EA+S LSPGRG RRA+ Sbjct: 69 MPHKVSLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 128 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++G+EG +I +E ++ + R L+IN + DEL HL Sbjct: 129 YGDITRVGAAGGFSIFAALDGIEGEVEIGTGIEAGEETTTRKLRINGTPAKTADELTDHL 188 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD Sbjct: 189 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 248 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + Sbjct: 249 SWLAGIEEQMASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPS 308 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++EYA L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ Sbjct: 309 VDLEDEYAAMLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 368 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + Sbjct: 369 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALAD 428 Query: 361 TAKFMRISN 369 A+F +++ Sbjct: 429 RAQFFTVAD 437 >gi|48527207|gb|AAT45744.1| RecF [Rhizobium etli] Length = 374 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 180/369 (48%), Positives = 256/369 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAASLSLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y +TR+G+ FS FA ++GMEG +I +E ++ + R L+IN + DEL HL Sbjct: 61 YGHITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTARRLRINGTPAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL+P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL +G FD Sbjct: 121 RLLWLIPAMDGLFTGASSDRRRFLDRLVVSLDPAHGRRASDFERAMRSRNKLLDDGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ L E ++ FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLTEETLESSPFPSASLQLSGFMDGQFSRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+++Y L + R D+ + RTL GPHR+DL+V + +KA+ A STGEQK +LVG+ Sbjct: 241 VDLEDDYRVMLAESRYRDAGAGRTLEGPHRTDLVVHHREKAMEAARCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE++R ALF I+ +G Q FMTGTD+ +F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDENRRAALFDIIDGLGGQAFMTGTDRGMFTALGD 360 Query: 361 TAKFMRISN 369 A+F +++ Sbjct: 361 RAQFFTVAD 369 >gi|25453250|sp|Q8UJ65|RECF_AGRT5 RecName: Full=DNA replication and repair protein recF Length = 376 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/370 (50%), Positives = 253/370 (68%), Gaps = 1/370 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 MTN++ + L +++FRNYA+ LV D +H + GDNG GKTN+LEA+SFLSPGRG RRA Sbjct: 2 MTNKVSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAV 61 Query: 61 YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +DVTR+G+ + FS FA V+GM+G I +E + R L++N ++ VDEL H Sbjct: 62 LSDVTRVGAEATGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTPVKSVDELTDH 121 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFE+ MRGRNRLL+EG FD Sbjct: 122 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLLSEGRFD 181 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 W IE QMAELG+ + +AR EM+ L +LI FP LSL GF+D + ++ Sbjct: 182 PVWLDGIEKQMAELGISMAVARYEMLGLLKTLIEGRAGNAAFPSATLSLAGFMDDRLNRP 241 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L++EY L DGR D+ + RTL GPHR DL V + +K + STGEQK +LVG+ Sbjct: 242 AVDLEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 301 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHA+L +N TG+AP+LLLDEI+AHLDE +R ALF ++ +G Q FMTGTD ++F +L Sbjct: 302 VLAHAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 361 Query: 360 ETAKFMRISN 369 E A+F +S+ Sbjct: 362 ERAQFFNVSH 371 >gi|159184149|ref|NP_353107.2| recombination protein F [Agrobacterium tumefaciens str. C58] gi|159139484|gb|AAK85892.2| recF-like protein [Agrobacterium tumefaciens str. C58] Length = 375 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/370 (50%), Positives = 253/370 (68%), Gaps = 1/370 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 MTN++ + L +++FRNYA+ LV D +H + GDNG GKTN+LEA+SFLSPGRG RRA Sbjct: 1 MTNKVSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAV 60 Query: 61 YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +DVTR+G+ + FS FA V+GM+G I +E + R L++N ++ VDEL H Sbjct: 61 LSDVTRVGAEATGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTPVKSVDELTDH 120 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFE+ MRGRNRLL+EG FD Sbjct: 121 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLLSEGRFD 180 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 W IE QMAELG+ + +AR EM+ L +LI FP LSL GF+D + ++ Sbjct: 181 PVWLDGIEKQMAELGISMAVARYEMLGLLKTLIEGRAGNAAFPSATLSLAGFMDDRLNRP 240 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L++EY L DGR D+ + RTL GPHR DL V + +K + STGEQK +LVG+ Sbjct: 241 AVDLEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 300 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHA+L +N TG+AP+LLLDEI+AHLDE +R ALF ++ +G Q FMTGTD ++F +L Sbjct: 301 VLAHAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 360 Query: 360 ETAKFMRISN 369 E A+F +S+ Sbjct: 361 ERAQFFNVSH 370 >gi|307319240|ref|ZP_07598669.1| DNA replication and repair protein RecF [Sinorhizobium meliloti AK83] gi|306895076|gb|EFN25833.1| DNA replication and repair protein RecF [Sinorhizobium meliloti AK83] Length = 374 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/369 (49%), Positives = 252/369 (68%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +S+FRNYA+L L D +H + G+NG GKTN++E +SFLSPGRG RRA+ Sbjct: 1 MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+G+P FS FA V+GMEG +I + ++ R L+IN R VDEL HL Sbjct: 61 YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR +F+R MR RNRLL+E D Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W S+IE +MA LG+ + +AR EM+ LS+L+ FP LSL GFLD Sbjct: 181 AWLSAIEREMAGLGISMALARQEMLGLLSALVERSRSDGTFPSASLSLAGFLDDGAGIPA 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E Y L +GR D+ + RTL GPHRSDL++ + +K I STGEQK +LVG+ Sbjct: 241 FELEERYLAMLAEGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V +G Q FMTGTD+++FD+L E Sbjct: 301 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQSFMTGTDRAMFDALGE 360 Query: 361 TAKFMRISN 369 A+++ ++N Sbjct: 361 RAQYLAVAN 369 >gi|15963941|ref|NP_384294.1| recombination protein F [Sinorhizobium meliloti 1021] gi|307306353|ref|ZP_07586097.1| DNA replication and repair protein RecF [Sinorhizobium meliloti BL225C] gi|8475781|sp|P56903|RECF_RHIME RecName: Full=DNA replication and repair protein recF gi|15073116|emb|CAC41575.1| DNA repair protein [Sinorhizobium meliloti 1021] gi|306902195|gb|EFN32792.1| DNA replication and repair protein RecF [Sinorhizobium meliloti BL225C] Length = 374 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/369 (49%), Positives = 252/369 (68%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +S+FRNYA+L L D +H + G+NG GKTN++E +SFLSPGRG RRA+ Sbjct: 1 MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+G+P FS FA V+GMEG +I + ++ R L+IN R VDEL HL Sbjct: 61 YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR +F+R MR RNRLL+E D Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W S+IE +MA LG+ + +AR EM+ LS+L+ FP LSL GFLD Sbjct: 181 AWLSAIEREMAGLGISMALARQEMLGLLSALVERSRSDGTFPSASLSLAGFLDDCAGIPA 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E Y L +GR D+ + RTL GPHRSDL++ + +K I STGEQK +LVG+ Sbjct: 241 FELEERYLAMLAEGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V +G Q FMTGTD+++FD+L E Sbjct: 301 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQSFMTGTDRAMFDALGE 360 Query: 361 TAKFMRISN 369 A+++ ++N Sbjct: 361 RAQYLAVAN 369 >gi|218674981|ref|ZP_03524650.1| recombination protein F [Rhizobium etli GR56] Length = 354 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 176/351 (50%), Positives = 243/351 (69%) Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE 80 + L D +H + G+NG GKTN++EA+S LSPGRG RRA+Y D+TR+G+ FS FA ++ Sbjct: 1 MSLTLDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAAYGDITRVGATGGFSIFAALD 60 Query: 81 GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER 140 GMEG +I +E ++ + R L+IN + DEL HLR+ WL P+MD +F+G S +R Sbjct: 61 GMEGEVEIGTGIEAGEETTTRRLRINGTAAKTADELTDHLRLLWLTPAMDGLFTGASSDR 120 Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 RRFLDR+V ++DP H RR DFER MR RN+LL EG FD SW + IE QMA LG+ + +A Sbjct: 121 RRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDPSWLAGIEEQMASLGIAMALA 180 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 R EM+ L+ LI E + FP L L+GF+DG+F + L++EYA L + R D+ Sbjct: 181 RQEMLGLLTRLIEERPENSPFPSASLQLSGFMDGQFSRPSVDLEDEYAAMLAESRYRDAG 240 Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320 + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ LAHARL+ N TG APILLLD Sbjct: 241 AGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLLD 300 Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371 EI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + A+F +++ + Sbjct: 301 EIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRTMFSALADRAQFFTVADGK 351 >gi|325291519|ref|YP_004277383.1| recombination protein F [Agrobacterium sp. H13-3] gi|325059372|gb|ADY63063.1| recombination protein F [Agrobacterium sp. H13-3] Length = 375 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/370 (49%), Positives = 252/370 (68%), Gaps = 1/370 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 MTN++ + L +++FRNYA+ L D +H + GDNG GKTN+LEA+SFLSPGRG RRA+ Sbjct: 1 MTNKVSLLRLKLTDFRNYAAASLALDDRHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAT 60 Query: 61 YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +DVTR+G+ + FS FA V+GM+G I +E + R L++N ++ VDEL H Sbjct: 61 LSDVTRVGAEAAGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTSVKSVDELTDH 120 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFE+ MRGRNRLL+EG FD Sbjct: 121 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPAHGRRASDFEKAMRGRNRLLSEGRFD 180 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 W IE QMAELG+ + +AR EM+ L SLI FP L+L+GF+D ++ Sbjct: 181 PVWLDGIEKQMAELGISMALARYEMLGLLKSLIEGRSGNAAFPSAALALSGFMDDTLNRP 240 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L++EY L +GR D+ + RTL GPHR DL V + +K + STGEQK +LVG+ Sbjct: 241 AVDLEDEYRLTLREGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 300 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHA+L +N TG AP+LLLDEI+AHLDE +R ALF ++ +G Q FMTGTD ++F +L Sbjct: 301 VLAHAQLTANMTGHAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 360 Query: 360 ETAKFMRISN 369 + A+F +S+ Sbjct: 361 DRAQFFNVSH 370 >gi|222147250|ref|YP_002548207.1| recombination protein F [Agrobacterium vitis S4] gi|259563353|sp|B9JZ91|RECF_AGRVS RecName: Full=DNA replication and repair protein recF gi|221734240|gb|ACM35203.1| DNA replication and repair protein [Agrobacterium vitis S4] Length = 374 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/369 (49%), Positives = 248/369 (67%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + I L +++FRNY S L D +H + G+NG GKTN++EA+SFLSPGRG RRA Sbjct: 1 MAEKTFINRLQLTDFRNYGSASLRLDGRHVVLTGNNGSGKTNLMEAVSFLSPGRGLRRAV 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 +DV R G+ S FS FA +EGM G ++ E D+ +VR L+IN +R VDEL HL Sbjct: 61 LSDVARAGAASGFSIFASLEGMAGDVELGTGSEVLDETAVRRLRINGASVRSVDELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S ERRRFLDR+V +IDP+H RR DFER MR RN+LL+EG FD+ Sbjct: 121 RVLWLTPAMDGLFTGSSSERRRFLDRLVLSIDPQHGRRASDFERAMRSRNKLLSEGRFDA 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L++LI + + E FP L L+GF+D + Sbjct: 181 SWLAGIEQQMAALGIAMALARQEMMRLLAALIEQRREPETFPGADLMLSGFMDEHAGTAA 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++ Y L R D+ + RTL GPHRSDL+V + +K + STGEQK +L+G+ Sbjct: 241 IDLEDTYRDSLAGSRGRDAAAGRTLEGPHRSDLLVRHREKDMEAERCSTGEQKALLIGLI 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHA L++ TGFAPILLLDEI+AHLDE +R ALF + +G Q FMTGTD +F SL + Sbjct: 301 LAHAELVATMTGFAPILLLDEIAAHLDEGRRAALFDRIDVLGGQAFMTGTDAQMFASLGD 360 Query: 361 TAKFMRISN 369 A+F+ + + Sbjct: 361 RAQFVTVDD 369 >gi|227824004|ref|YP_002827977.1| recombination protein F [Sinorhizobium fredii NGR234] gi|227343006|gb|ACP27224.1| DNA replication and repair protein, RecF [Sinorhizobium fredii NGR234] Length = 470 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 182/369 (49%), Positives = 253/369 (68%), Gaps = 1/369 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+L L D +H + G+NG GKTN++EAISFLSPGRG RRA+ Sbjct: 98 MPHKVSLTRLKLTDFRNYAALSLELDQRHVVLTGENGAGKTNLMEAISFLSPGRGLRRAA 157 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+G+ FS FA VEGM+G +I ++ R L++N R VDEL HL Sbjct: 158 YADVARVGATDGFSVFAAVEGMDGPVEIGTGTAGAEEGQSRRLRLNGTPARTVDELTDHL 217 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR +F+R MR RNRLL+E D Sbjct: 218 RVLWLTPAMDGLFTGPSSDRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 277 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W ++IE +MA LGV + +AR+EM+ L++L+ E Q +FP LSL GFLD Sbjct: 278 AWLTAIEREMAGLGVSMALARLEMLGLLTALV-ERSQGGSFPSAGLSLAGFLDDCHGLPA 336 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E Y L DGR D+ + RTL GPHRSDL++ + +K + STGEQK +LVG+ Sbjct: 337 YDLEERYLAMLSDGRGRDAAAGRTLDGPHRSDLLIRHREKDMEAERCSTGEQKALLVGLV 396 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF V ++G Q FMTGTD+++F +L E Sbjct: 397 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDRVDELGGQAFMTGTDRAMFTALGE 456 Query: 361 TAKFMRISN 369 A ++ ++N Sbjct: 457 RACYLTVAN 465 >gi|150398584|ref|YP_001329051.1| recombination protein F [Sinorhizobium medicae WSM419] gi|150030099|gb|ABR62216.1| DNA replication and repair protein RecF [Sinorhizobium medicae WSM419] Length = 409 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 184/369 (49%), Positives = 252/369 (68%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +S+FRNYA+ L D +H + G+NG GKTN++EAISFLSPGRG RRA+ Sbjct: 36 MPHKVFLTRLKLSDFRNYATAALDLDQRHVVLTGENGAGKTNLMEAISFLSPGRGLRRAA 95 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+G+ FS FA V+GMEG +I + ++ R L+IN R VDELN HL Sbjct: 96 YADVVRVGAADGFSVFAAVDGMEGPVEIGTGTQGSEEGHSRRLRINGTAARTVDELNDHL 155 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR +F+R MR RNRLL+E D Sbjct: 156 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 215 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W S+IE +MA LG+ + +AR EM+ LS+L+ FP +LSL GFLD Sbjct: 216 AWVSAIEREMAGLGISMALARQEMLGLLSALVDRSRTDGTFPSARLSLAGFLDDCAGIPA 275 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E Y L DGR D+ + RTL GPHRSDL++ + +K I STGEQK +LVG+ Sbjct: 276 FELEERYLAMLADGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 335 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V +G Q FMTGTD+++F++L E Sbjct: 336 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQAFMTGTDQTMFEALGE 395 Query: 361 TAKFMRISN 369 A ++ ++N Sbjct: 396 RAHYLAVAN 404 >gi|163757765|ref|ZP_02164854.1| putative DNA replication and repair protein [Hoeflea phototrophica DFL-43] gi|162285267|gb|EDQ35549.1| putative DNA replication and repair protein [Hoeflea phototrophica DFL-43] Length = 382 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 172/374 (45%), Positives = 245/374 (65%), Gaps = 2/374 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M ++ I+ L ++ FRNYAS L DA+H + VGDNG GKTN++EA+S LSPGRG RRA Sbjct: 1 MAQKVHIERLKLTGFRNYASQSLELDARHVVLVGDNGAGKTNLMEAVSLLSPGRGMRRAP 60 Query: 61 YADVTRIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 Y+DV + GS S FS FA +EGM G DI ++ ++ R ++IN R D++ + Sbjct: 61 YSDVIKAGSEPASGFSIFASLEGMAGPVDIGTGVDGLEESGARKVRINGSPARSADDMLE 120 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 HLR+ WL PSMD +F+G + +RRRFLDR+V ++DP H R + +ER MR RNRLL+EG Sbjct: 121 HLRLLWLTPSMDGLFTGSAGDRRRFLDRLVLSVDPAHGSRALSYERAMRSRNRLLSEGRA 180 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D +W +EAQM+ELGV + +AR E++ LS+LI + + FP + L GFL+ + + Sbjct: 181 DPTWLDGLEAQMSELGVAMAMARSEVVRLLSALIDDSQAESPFPAASVRLEGFLEDEGLE 240 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++ + + GR D+ + RTL GPHR DL+V + KA+ A STGEQK +L+G Sbjct: 241 TASDMEVAFIDLMKHGRGRDAAAGRTLSGPHRMDLVVHHRAKAMPAALSSTGEQKALLIG 300 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 I L HA+L+ + TG APILLLDE++AHLDE +R ALF ++ + Q FMTGTD ++F SL Sbjct: 301 IILGHAQLVRSLTGHAPILLLDEVAAHLDEGRRAALFDLIETLDCQAFMTGTDAAMFGSL 360 Query: 359 NETAKFMRISNHQA 372 + +S +A Sbjct: 361 GPRGQMFEVSEGRA 374 >gi|260461963|ref|ZP_05810208.1| DNA replication and repair protein RecF [Mesorhizobium opportunistum WSM2075] gi|259032210|gb|EEW33476.1| DNA replication and repair protein RecF [Mesorhizobium opportunistum WSM2075] Length = 377 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 170/370 (45%), Positives = 232/370 (62%), Gaps = 1/370 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + I L ++ FRNYA+L + +F GDNG GKTN+LEAISFL+PGRG RRA Sbjct: 1 MPGQTHISKLTLTNFRNYAALAIDLAPGAVVFSGDNGAGKTNLLEAISFLTPGRGLRRAP 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R G F+ AR++G +G +I + D R ++IN R +++ + L Sbjct: 61 YADVARAGGDGGFALHARLDGPDGQVEIGTGISGGDSEGGRRVRINGATARSAEDMLEWL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R +D+E+ MRGRNRLLTE D Sbjct: 121 RVVWLTPAMDTLFTGPAADRRRFLDRLVLAIDPGHGQRALDYEKAMRGRNRLLTENSRDD 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 W +IE QMAE GV I AR EM+ L+++I FP + L G L+ + + Sbjct: 181 RWFEAIEIQMAETGVAIAAARAEMVRLLAAMIDRLPDSGPFPQADIGLAGDLEAEIAGTP 240 Query: 241 CA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E + + L DGR D + RTL GPHRSDL+V + KA+ STGEQK +LVGI Sbjct: 241 AVDVEERFRRALADGRDRDRAAGRTLEGPHRSDLLVRHRPKAMPAELCSTGEQKALLVGI 300 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L+HARL +G PILLLDEI+AHLD +R ALF I+ ++ Q FMTGTD ++F SL Sbjct: 301 VLSHARLTGEVSGMTPILLLDEIAAHLDGGRRAALFSILEELNCQAFMTGTDAALFSSLQ 360 Query: 360 ETAKFMRISN 369 A+F+ + + Sbjct: 361 GRAQFLTVDH 370 >gi|13474646|ref|NP_106215.1| recombination protein F [Mesorhizobium loti MAFF303099] gi|20978640|sp|Q98BH1|RECF_RHILO RecName: Full=DNA replication and repair protein recF gi|14025401|dbj|BAB52001.1| RecF protein [Mesorhizobium loti MAFF303099] Length = 379 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 167/370 (45%), Positives = 233/370 (62%), Gaps = 1/370 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + I L ++ FRNYA+L + +F GDNG GKTN+LEAIS L+PGRG RRA Sbjct: 1 MPAQTHISKLTLTNFRNYAALAIDLAPGAVVFSGDNGAGKTNLLEAISLLTPGRGLRRAP 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R G F+ AR++G +G +I + + R ++IN R +++ + L Sbjct: 61 YADVAREGGDGGFALHARLDGPDGQVEIGTGISVGEGEGGRRVRINGATARSAEDMLEWL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R +D+E+ MRGRNRLLT+G D Sbjct: 121 RVVWLTPAMDALFTGPAADRRRFLDRLVLAIDPGHGQRALDYEKAMRGRNRLLTDGSRDD 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 W +IE QMAE GV I AR E++ L+++I FP +SL+G L+ + + Sbjct: 181 RWFEAIETQMAETGVAIAAARAELVRLLAAMIDRLPDTGPFPQADISLSGDLEAEVSSAP 240 Query: 241 CA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E + + L GR D + RTL GPHRSDL+V + KA+ STGEQK +LVGI Sbjct: 241 AVDVEERFRRALAGGRDRDRAAGRTLEGPHRSDLLVRHRPKAMPAELCSTGEQKALLVGI 300 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L+HARL +G PILLLDEI+AHLD +R ALF I+ ++ Q FMTGTD ++F SL Sbjct: 301 VLSHARLTGEMSGMTPILLLDEIAAHLDGGRRAALFSILEELNCQAFMTGTDAALFSSLM 360 Query: 360 ETAKFMRISN 369 A+F+ + + Sbjct: 361 GRAQFLTVDH 370 >gi|319779752|ref|YP_004139228.1| DNA replication and repair protein RecF [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165640|gb|ADV09178.1| DNA replication and repair protein RecF [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 381 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 170/372 (45%), Positives = 234/372 (62%), Gaps = 3/372 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + I L ++ FRNYA+L + +F GDNG GKTN+LEAISFL+PGRG RRA Sbjct: 1 MPAQNHISKLTLTNFRNYAALTIDLAPGAVVFSGDNGAGKTNLLEAISFLTPGRGLRRAP 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD--DRSVRCLQINDVVIRVVDELNK 118 YADV R G F+ AR++G +G +I + D R ++IN R +++ + Sbjct: 61 YADVAREGGDGGFALHARLDGPDGQVEIGTGISGGDTAGEGGRRVRINGASARSAEDMLE 120 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 LR+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R ID+E+ MRGRNRLLTE Sbjct: 121 WLRVVWLTPAMDALFTGPAADRRRFLDRLVLAIDPGHGQRAIDYEKAMRGRNRLLTESSR 180 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D W +IE QMAE GV I AR EM+ L+++I FP + L+G L+ + Sbjct: 181 DDRWFDAIETQMAETGVAIAAARAEMVRLLAAMIDRLPDTGPFPQADIGLSGELEAEIAV 240 Query: 239 SFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + ++E + + L +GR+ D + RTL GPHRSDL+V + KA+ STGEQK +LV Sbjct: 241 APAVDVEERFRRTLAEGRERDRAAGRTLDGPHRSDLVVRHRPKAMPAELCSTGEQKALLV 300 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 GI L+HARL +G PILLLDEI+AHLD +R ALF I+ ++ Q FMTGTD ++F S Sbjct: 301 GIVLSHARLTGEMSGMTPILLLDEIAAHLDSGRRAALFSILEELNCQAFMTGTDAALFSS 360 Query: 358 LNETAKFMRISN 369 L A+F+ + + Sbjct: 361 LQGRAQFLTVDH 372 >gi|225626554|ref|ZP_03784593.1| DNA replication and repair protein RecF [Brucella ceti str. Cudo] gi|260169593|ref|ZP_05756404.1| recombination protein F [Brucella sp. F5/99] gi|261759119|ref|ZP_06002828.1| DNA replication and repair protein recF [Brucella sp. F5/99] gi|225618211|gb|EEH15254.1| DNA replication and repair protein RecF [Brucella ceti str. Cudo] gi|261739103|gb|EEY27099.1| DNA replication and repair protein recF [Brucella sp. F5/99] Length = 384 Score = 318 bits (815), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 168/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 12 DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71 Query: 63 DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M G A+I R ++IN + D+L + R Sbjct: 72 DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARTQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|294851413|ref|ZP_06792086.1| DNA replication and repair protein recF [Brucella sp. NVSL 07-0026] gi|294820002|gb|EFG37001.1| DNA replication and repair protein recF [Brucella sp. NVSL 07-0026] Length = 384 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 168/371 (45%), Positives = 234/371 (63%), Gaps = 4/371 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 12 DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71 Query: 63 DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M G A+I R + IN + D+L + R Sbjct: 72 DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVCINGIAASA-DDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIVAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|110632365|ref|YP_672573.1| recombination protein F [Mesorhizobium sp. BNC1] gi|110283349|gb|ABG61408.1| DNA replication and repair protein RecF [Chelativorans sp. BNC1] Length = 391 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 166/370 (44%), Positives = 225/370 (60%), Gaps = 4/370 (1%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++ I L +S FRNYASL L + G+NG GKTN+LEAISFLSPGRG RRA+ + Sbjct: 16 QVHIAKLTLSNFRNYASLSLGLQPGAVVLTGENGAGKTNLLEAISFLSPGRGLRRATLEE 75 Query: 64 VTRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 RIGS F+ A VEG G I + S R ++I+ R + + L Sbjct: 76 AMRIGSSDGFAVHAEVEGPYGSCRIGTGTAGTAAEGSESGRRVRIDGEPQRSAEAMLDWL 135 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V AIDP H RR D+E+ MR RNRL + D Sbjct: 136 RVIWLTPAMDALFTGASADRRRFLDRLVLAIDPAHGRRAADYEKAMRSRNRLFADDVRDD 195 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W +IE QMAE GV I AR EM+ L+++I FP L+L G +D ++ Sbjct: 196 AWFDAIEMQMAETGVAIAAARAEMLRLLAAMIERLPAGSPFPKALLALEGTVDEAIARNP 255 Query: 241 CA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E++ +L + R D + R L GPHRS+L+V + K + STGEQK +LVG+ Sbjct: 256 AVEVEEDFRTRLREERPRDRAAGRALEGPHRSELLVRHAPKDMPAESCSTGEQKALLVGL 315 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHARL + +G APILLLDEISAH D D+R ALF I+ D+ Q FMTGT++++F SL Sbjct: 316 VLAHARLTAELSGMAPILLLDEISAHFDADRRAALFDILEDLNCQAFMTGTERALFSSLE 375 Query: 360 ETAKFMRISN 369 A+F+ +S Sbjct: 376 GRAQFLAVSG 385 >gi|114704369|ref|ZP_01437277.1| DNA replication and repair protein [Fulvimarina pelagi HTCC2506] gi|114539154|gb|EAU42274.1| DNA replication and repair protein [Fulvimarina pelagi HTCC2506] Length = 385 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 167/372 (44%), Positives = 234/372 (62%), Gaps = 4/372 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + +I L + +FRNY L L F + +F G NG GKTN+LEA+S LSPGRG RRA Sbjct: 6 MGRQSEIGHLRLFDFRNYELLDLSFQKRFVVFAGPNGAGKTNLLEALSLLSPGRGLRRAP 65 Query: 61 YADVTRIGSPSFFSTFA--RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 Y ++ R G+ S FS A R+ E S++L+ S R ++I++ + +EL Sbjct: 66 YGEMARQGTQSGFSVKASVRIASEETTVVTSVRLDGEGPNS-RLVRIDETQAKSAEELLD 124 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 RI WL P+MD +F+G + +RRRFLDRMV +IDP H RR DFER MR RN+LL++ Sbjct: 125 IARIVWLTPAMDGLFTGPAGDRRRFLDRMVLSIDPTHGRRASDFERAMRSRNKLLSDNRI 184 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFD 237 D W + IE QMAELGV + +AR E++ L++ I FP L L+ GF +G D Sbjct: 185 DDRWLAGIEMQMAELGVAMAVARNELVANLTNAIALADPDLPFPKAGLVLSPGFEEGGLD 244 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +++ Y ++L R D+ + RTL GPHR+DL V + K + STGEQK +LV Sbjct: 245 GPAVQVEDRYRERLARDRYRDAGAGRTLEGPHRADLEVTHLAKHMPAGLSSTGEQKALLV 304 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 G+ +AHARL S +G APILLLDEI+AHLD +R +LF +V D+G Q FMTGTD+S+F++ Sbjct: 305 GLIIAHARLTSVLSGMAPILLLDEIAAHLDARRRASLFDLVGDLGGQTFMTGTDESLFEA 364 Query: 358 LNETAKFMRISN 369 L + A+ + I++ Sbjct: 365 LGDRAQIITIAD 376 >gi|254718227|ref|ZP_05180038.1| recombination protein F [Brucella sp. 83/13] gi|265983183|ref|ZP_06095918.1| DNA replication and repair protein recF [Brucella sp. 83/13] gi|306839967|ref|ZP_07472761.1| DNA replication and repair protein RecF [Brucella sp. NF 2653] gi|264661775|gb|EEZ32036.1| DNA replication and repair protein recF [Brucella sp. 83/13] gi|306404931|gb|EFM61216.1| DNA replication and repair protein RecF [Brucella sp. NF 2653] Length = 384 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 168/372 (45%), Positives = 236/372 (63%), Gaps = 4/372 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 DV R + F+ A ++ M G A+I R ++IN + D+L + Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYA 128 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 RI W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 129 RILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDD 188 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 189 QWLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEA 248 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L+E++ + L DGR D ++ RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 249 ALDLEEDFRRSLRDGRARDRVAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGL 308 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 309 ILAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALA 368 Query: 360 ETAKFMRISNHQ 371 A+F +S Q Sbjct: 369 GDAQFFNVSAGQ 380 >gi|148560734|ref|YP_001258052.1| recombination protein F [Brucella ovis ATCC 25840] gi|148371991|gb|ABQ61970.1| recF protein [Brucella ovis ATCC 25840] Length = 384 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 168/371 (45%), Positives = 236/371 (63%), Gaps = 4/371 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 12 DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71 Query: 63 DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M G A+I R ++IN + D+L + R Sbjct: 72 DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMDR+F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDRLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q F+TGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFITGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|254694809|ref|ZP_05156637.1| recombination protein F [Brucella abortus bv. 3 str. Tulya] gi|261215134|ref|ZP_05929415.1| DNA replication and repair protein recF [Brucella abortus bv. 3 str. Tulya] gi|260916741|gb|EEX83602.1| DNA replication and repair protein recF [Brucella abortus bv. 3 str. Tulya] Length = 384 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 169/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 12 DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71 Query: 63 DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + FS A ++ M G A+I R ++IN + D+L + R Sbjct: 72 DVARANAEGGFSIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINRIAASA-DDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|239830849|ref|ZP_04679178.1| DNA replication and repair protein RecF [Ochrobactrum intermedium LMG 3301] gi|239823116|gb|EEQ94684.1| DNA replication and repair protein RecF [Ochrobactrum intermedium LMG 3301] Length = 384 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 168/368 (45%), Positives = 236/368 (64%), Gaps = 4/368 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I+ L + FRNYA L L H + G+NG GKTN++EA+SFLSPGRG RRA+Y Sbjct: 12 DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAVSFLSPGRGLRRAAYD 71 Query: 63 DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R S F+ A ++ M G A+I R ++IN + D+L + R Sbjct: 72 DVARTSSLDGFAIHAALDCMIYGEAEIGTGTAGGG-EGGRKVRINGIAASG-DDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+ER MR RNRLL++G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYERAMRSRNRLLSDGNGDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE+QMAELG I AR E + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIESQMAELGTAIAAARAEAMRLIAAMIERLPAEGPFPKADCFLEGTLEQRISVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + KA+ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLEGPHRTDLIVQHRPKAMPAALCSTGEQKALLIGLV 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++F++L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDTGRRAALFGILNELGGQAFMTGTDRALFEALEG 369 Query: 361 TAKFMRIS 368 A+F ++ Sbjct: 370 EAQFFNVA 377 >gi|23500919|ref|NP_697046.1| recombination protein F [Brucella suis 1330] gi|161617994|ref|YP_001591881.1| recombination protein F [Brucella canis ATCC 23365] gi|163842280|ref|YP_001626684.1| recombination protein F [Brucella suis ATCC 23445] gi|254705188|ref|ZP_05167016.1| recombination protein F [Brucella suis bv. 3 str. 686] gi|254707296|ref|ZP_05169124.1| recombination protein F [Brucella pinnipedialis M163/99/10] gi|254709165|ref|ZP_05170976.1| recombination protein F [Brucella pinnipedialis B2/94] gi|256030689|ref|ZP_05444303.1| recombination protein F [Brucella pinnipedialis M292/94/1] gi|256158693|ref|ZP_05456572.1| recombination protein F [Brucella ceti M490/95/1] gi|256254094|ref|ZP_05459630.1| recombination protein F [Brucella ceti B1/94] gi|256368468|ref|YP_003105974.1| recombination protein F [Brucella microti CCM 4915] gi|260567346|ref|ZP_05837816.1| DNA replication and repair protein recF [Brucella suis bv. 4 str. 40] gi|261221234|ref|ZP_05935515.1| DNA replication and repair protein recF [Brucella ceti B1/94] gi|261314777|ref|ZP_05953974.1| DNA replication and repair protein recF [Brucella pinnipedialis M163/99/10] gi|261316662|ref|ZP_05955859.1| DNA replication and repair protein recF [Brucella pinnipedialis B2/94] gi|261755892|ref|ZP_05999601.1| DNA replication and repair protein recF [Brucella suis bv. 3 str. 686] gi|265987734|ref|ZP_06100291.1| DNA replication and repair protein recF [Brucella pinnipedialis M292/94/1] gi|265997195|ref|ZP_06109752.1| DNA replication and repair protein recF [Brucella ceti M490/95/1] gi|306843605|ref|ZP_07476206.1| DNA replication and repair protein RecF [Brucella sp. BO1] gi|38258604|sp|Q8G3E5|RECF_BRUSU RecName: Full=DNA replication and repair protein recF gi|23346772|gb|AAN28961.1| recF protein [Brucella suis 1330] gi|161334805|gb|ABX61110.1| DNA replication and repair protein RecF [Brucella canis ATCC 23365] gi|163673003|gb|ABY37114.1| DNA replication and repair protein RecF [Brucella suis ATCC 23445] gi|255998626|gb|ACU47025.1| recombination protein F [Brucella microti CCM 4915] gi|260156864|gb|EEW91944.1| DNA replication and repair protein recF [Brucella suis bv. 4 str. 40] gi|260919818|gb|EEX86471.1| DNA replication and repair protein recF [Brucella ceti B1/94] gi|261295885|gb|EEX99381.1| DNA replication and repair protein recF [Brucella pinnipedialis B2/94] gi|261303803|gb|EEY07300.1| DNA replication and repair protein recF [Brucella pinnipedialis M163/99/10] gi|261745645|gb|EEY33571.1| DNA replication and repair protein recF [Brucella suis bv. 3 str. 686] gi|262551663|gb|EEZ07653.1| DNA replication and repair protein recF [Brucella ceti M490/95/1] gi|264659931|gb|EEZ30192.1| DNA replication and repair protein recF [Brucella pinnipedialis M292/94/1] gi|306276296|gb|EFM57996.1| DNA replication and repair protein RecF [Brucella sp. BO1] Length = 384 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 168/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 12 DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71 Query: 63 DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M G A+I R ++IN + D+L + R Sbjct: 72 DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|306842702|ref|ZP_07475345.1| DNA replication and repair protein RecF [Brucella sp. BO2] gi|306287148|gb|EFM58650.1| DNA replication and repair protein RecF [Brucella sp. BO2] Length = 384 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 168/372 (45%), Positives = 235/372 (63%), Gaps = 4/372 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 DV R + F+ A ++ M G A+I R ++IN + D+L + Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYA 128 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 RI W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 129 RILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDD 188 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 189 QWLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEA 248 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 249 ALDLEEDFRRSLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGL 308 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 309 ILAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALA 368 Query: 360 ETAKFMRISNHQ 371 A+F +S Q Sbjct: 369 GDAQFFNVSAGQ 380 >gi|256060148|ref|ZP_05450330.1| recombination protein F [Brucella neotomae 5K33] gi|261324125|ref|ZP_05963322.1| DNA replication and repair protein recF [Brucella neotomae 5K33] gi|261300105|gb|EEY03602.1| DNA replication and repair protein recF [Brucella neotomae 5K33] Length = 384 Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 168/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 12 DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71 Query: 63 DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M G A+I R ++IN + D+L + R Sbjct: 72 DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|17988224|ref|NP_540858.1| recombination protein F [Brucella melitensis bv. 1 str. 16M] gi|62288994|ref|YP_220787.1| recombination protein F [Brucella abortus bv. 1 str. 9-941] gi|82698935|ref|YP_413509.1| recombination protein F [Brucella melitensis biovar Abortus 2308] gi|189023271|ref|YP_001934039.1| recombination protein F [Brucella abortus S19] gi|225851549|ref|YP_002731782.1| recombination protein F [Brucella melitensis ATCC 23457] gi|237814484|ref|ZP_04593482.1| DNA replication and repair protein RecF [Brucella abortus str. 2308 A] gi|254690320|ref|ZP_05153574.1| recombination protein F [Brucella abortus bv. 6 str. 870] gi|254696437|ref|ZP_05158265.1| recombination protein F [Brucella abortus bv. 2 str. 86/8/59] gi|254731349|ref|ZP_05189927.1| recombination protein F [Brucella abortus bv. 4 str. 292] gi|256045793|ref|ZP_05448671.1| recombination protein F [Brucella melitensis bv. 1 str. Rev.1] gi|256112512|ref|ZP_05453433.1| recombination protein F [Brucella melitensis bv. 3 str. Ether] gi|256258574|ref|ZP_05464110.1| recombination protein F [Brucella abortus bv. 9 str. C68] gi|256264942|ref|ZP_05467474.1| recombination protein F [Brucella melitensis bv. 2 str. 63/9] gi|260546288|ref|ZP_05822028.1| recombination protein F [Brucella abortus NCTC 8038] gi|260563086|ref|ZP_05833572.1| recombination protein F [Brucella melitensis bv. 1 str. 16M] gi|260755859|ref|ZP_05868207.1| DNA replication and repair protein recF [Brucella abortus bv. 6 str. 870] gi|260759082|ref|ZP_05871430.1| DNA replication and repair protein recF [Brucella abortus bv. 4 str. 292] gi|260760808|ref|ZP_05873151.1| DNA replication and repair protein recF [Brucella abortus bv. 2 str. 86/8/59] gi|260884884|ref|ZP_05896498.1| DNA replication and repair protein recF [Brucella abortus bv. 9 str. C68] gi|265992208|ref|ZP_06104765.1| DNA replication and repair protein recF [Brucella melitensis bv. 1 str. Rev.1] gi|265993948|ref|ZP_06106505.1| DNA replication and repair protein recF [Brucella melitensis bv. 3 str. Ether] gi|297247411|ref|ZP_06931129.1| DNA replication and repair protein recF [Brucella abortus bv. 5 str. B3196] gi|20978586|sp|Q8YED7|RECF_BRUME RecName: Full=DNA replication and repair protein recF gi|81309491|sp|Q57G08|RECF_BRUAB RecName: Full=DNA replication and repair protein recF gi|97180679|sp|Q2YPM3|RECF_BRUA2 RecName: Full=DNA replication and repair protein recF gi|17983989|gb|AAL53122.1| recf protein [Brucella melitensis bv. 1 str. 16M] gi|62195126|gb|AAX73426.1| RecF, recF protein [Brucella abortus bv. 1 str. 9-941] gi|82615036|emb|CAJ09959.1| RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella melitensis biovar Abortus 2308] gi|189018843|gb|ACD71565.1| recombination protein F [Brucella abortus S19] gi|225639914|gb|ACN99827.1| DNA replication and repair protein RecF [Brucella melitensis ATCC 23457] gi|237789321|gb|EEP63531.1| DNA replication and repair protein RecF [Brucella abortus str. 2308 A] gi|260096395|gb|EEW80271.1| recombination protein F [Brucella abortus NCTC 8038] gi|260153102|gb|EEW88194.1| recombination protein F [Brucella melitensis bv. 1 str. 16M] gi|260669400|gb|EEX56340.1| DNA replication and repair protein recF [Brucella abortus bv. 4 str. 292] gi|260671240|gb|EEX58061.1| DNA replication and repair protein recF [Brucella abortus bv. 2 str. 86/8/59] gi|260675967|gb|EEX62788.1| DNA replication and repair protein recF [Brucella abortus bv. 6 str. 870] gi|260874412|gb|EEX81481.1| DNA replication and repair protein recF [Brucella abortus bv. 9 str. C68] gi|262764929|gb|EEZ10850.1| DNA replication and repair protein recF [Brucella melitensis bv. 3 str. Ether] gi|263003274|gb|EEZ15567.1| DNA replication and repair protein recF [Brucella melitensis bv. 1 str. Rev.1] gi|263095427|gb|EEZ19028.1| recombination protein F [Brucella melitensis bv. 2 str. 63/9] gi|297174580|gb|EFH33927.1| DNA replication and repair protein recF [Brucella abortus bv. 5 str. B3196] gi|326408014|gb|ADZ65079.1| recombination protein F [Brucella melitensis M28] gi|326537732|gb|ADZ85947.1| DNA replication and repair protein RecF [Brucella melitensis M5-90] Length = 384 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 168/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 12 DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71 Query: 63 DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M G A+I R ++IN + D+L + R Sbjct: 72 DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINRIAASA-DDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|49474938|ref|YP_032979.1| recombination protein F [Bartonella henselae str. Houston-1] gi|49237743|emb|CAF26935.1| DNA replication and repair protein recF [Bartonella henselae str. Houston-1] Length = 377 Score = 308 bits (789), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 167/370 (45%), Positives = 230/370 (62%), Gaps = 6/370 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ ++ L + +RNY S + F QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+ Sbjct: 6 HKVAVRQLKLLRYRNYFSFNIRFSGQHVVFTGHNGSGKTNLLEALSFLSPGRGLRRAAYS 65 Query: 63 DVTRI-GSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 DV+ G F FAR+E + G +I LE D+ R + IN V D L + Sbjct: 66 DVSFANGGGEGFVVFARLECALYGEVNIGTALEMSDNS--RKVHINGVN-ETGDCLTDYC 122 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 +S L PSMD +F+G S+ERRRFLDRMV AIDP H RR+ D++R+MR RNRL +G D Sbjct: 123 HMSILTPSMDGLFTGSSLERRRFLDRMVLAIDPLHSRRIADYDRVMRARNRLFLDGNEDC 182 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239 +W ++E QMAEL I+ AR+++I L+ ++ + FP L + GFL+ + S Sbjct: 183 AWFDALEKQMAELATAISAARIDVIRLLNDMLARTPSQLPFPRAFLQIDGFLEAALSKIS 242 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E++ +L R +D + RTL GPHR+DL V Y DK + A STGEQK +L G+ Sbjct: 243 AVEVEEQFCDRLQHNRAIDRAAGRTLEGPHRTDLQVFYADKNMAAASCSTGEQKALLTGL 302 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L HARL + PILLLDEI AHLD +R ALF I+ D+G Q FMTGTD +F++L Sbjct: 303 VLCHARLTGLMSERTPILLLDEIVAHLDSHRRAALFDILDDLGGQTFMTGTDPILFNALK 362 Query: 360 ETAKFMRISN 369 A+F I + Sbjct: 363 GRAEFFAIKD 372 >gi|254700821|ref|ZP_05162649.1| recombination protein F [Brucella suis bv. 5 str. 513] gi|261751327|ref|ZP_05995036.1| DNA replication and repair protein recF [Brucella suis bv. 5 str. 513] gi|261741080|gb|EEY29006.1| DNA replication and repair protein recF [Brucella suis bv. 5 str. 513] Length = 384 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 168/372 (45%), Positives = 234/372 (62%), Gaps = 4/372 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 DV R + F+ A ++ M G A+I R ++IN + D+L + Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYA 128 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 RI W+VPSMD +F G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 129 RILWVVPSMDGLFIGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDD 188 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 189 QWLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEA 248 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 249 ALDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGL 308 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 309 ILAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALA 368 Query: 360 ETAKFMRISNHQ 371 A+F +S Q Sbjct: 369 GDAQFFNVSAGQ 380 >gi|118590458|ref|ZP_01547860.1| recombination protein F [Stappia aggregata IAM 12614] gi|118436921|gb|EAV43560.1| recombination protein F [Stappia aggregata IAM 12614] Length = 382 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 163/371 (43%), Positives = 234/371 (63%), Gaps = 9/371 (2%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L+++ FRNY++L L A+ FVG NG GKTNILEAISFL+ GRG RRA+ AD+ Sbjct: 8 QLTRLSLTGFRNYSALTLPLTAKMAAFVGPNGAGKTNILEAISFLTAGRGLRRAALADIA 67 Query: 66 RIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G +S A V +G E + T S R ++I+ +R + L ++R+ Sbjct: 68 RKGGDGSWSVAATVLLDGFETRIGTGLVAGT----SGRKVRIDGEEVRGSESLLDYMRVL 123 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WLVPSMD +F+G +RRRFLDR+ AIDP H RR+ DFE +R RNRLL +G D+ + Sbjct: 124 WLVPSMDGLFTGPGSDRRRFLDRLTLAIDPTHGRRVSDFENALRQRNRLLDQGGSDA-YL 182 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S++E Q+AELG ++IAR E ++ LS +I + Q FPH +SL G + + + Sbjct: 183 SALEQQVAELGTAVSIARTETVDLLSRMIAGQATQDLPFPHASVSLEGAFEAETAGLSAS 242 Query: 243 LKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +E+ Y + L DGR D + RTL GPH SDL V + KA+ + STGEQK +L+G+ L Sbjct: 243 DREDRYRQMLQDGRHRDRAAGRTLNGPHLSDLTVFHAAKAMPASQSSTGEQKALLIGLIL 302 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA L + +G P+LLLDE++AHLD D+R+ALF + +G Q+FMTGTD+++F++L Sbjct: 303 AHAELTAKVSGMTPVLLLDEVAAHLDPDRRSALFSKLDSLGGQVFMTGTDEALFEALPAE 362 Query: 362 AKFMRISNHQA 372 A+ I H+ Sbjct: 363 AEVFEIREHKG 373 >gi|254713411|ref|ZP_05175222.1| recombination protein F [Brucella ceti M644/93/1] gi|254716232|ref|ZP_05178043.1| recombination protein F [Brucella ceti M13/05/1] gi|261218005|ref|ZP_05932286.1| DNA replication and repair protein recF [Brucella ceti M13/05/1] gi|261321145|ref|ZP_05960342.1| DNA replication and repair protein recF [Brucella ceti M644/93/1] gi|260923094|gb|EEX89662.1| DNA replication and repair protein recF [Brucella ceti M13/05/1] gi|261293835|gb|EEX97331.1| DNA replication and repair protein recF [Brucella ceti M644/93/1] Length = 384 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 167/371 (45%), Positives = 234/371 (63%), Gaps = 4/371 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 12 DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71 Query: 63 DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M G A+I R ++IN + D+L + R Sbjct: 72 DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+V SMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVSSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|153007350|ref|YP_001368565.1| recombination protein F [Ochrobactrum anthropi ATCC 49188] gi|151559238|gb|ABS12736.1| DNA replication and repair protein RecF [Ochrobactrum anthropi ATCC 49188] Length = 387 Score = 305 bits (782), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 168/367 (45%), Positives = 235/367 (64%), Gaps = 4/367 (1%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y D Sbjct: 13 RVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYDD 72 Query: 64 VTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 V R S F+ A ++ M G A+I R ++IN + D L+ + RI Sbjct: 73 VARANSLDGFAIHAALDCMIYGEAEIGTGTAGGG-EGGRKVRINGIAGSGDDMLD-YARI 130 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D W Sbjct: 131 LWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQW 190 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSFC 241 +IE+QMAELG I AR E + ++++I + FP L G L+ + + ++ Sbjct: 191 LDAIESQMAELGTAIAAARAEAMRLIAAMIERLPVEGPFPKADCFLEGTLEQRINVEAAL 250 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ L Sbjct: 251 DLEEDFRRTLRDGRARDRAAGRTLEGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLVL 310 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++F++L Sbjct: 311 AHARLTAELSGMAPILLLDEIAAHLDTGRRAALFGILDELGGQAFMTGTDRALFEALEGE 370 Query: 362 AKFMRIS 368 A+F +S Sbjct: 371 AQFFNVS 377 >gi|163867417|ref|YP_001608614.1| recombination protein F [Bartonella tribocorum CIP 105476] gi|161017061|emb|CAK00619.1| DNA replication and repair protein [Bartonella tribocorum CIP 105476] Length = 377 Score = 302 bits (773), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 166/370 (44%), Positives = 228/370 (61%), Gaps = 6/370 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ ++ L + +RNY+ + F QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+ Sbjct: 6 HKVSVRQLKLLRYRNYSFFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAYS 65 Query: 63 DVTRI-GSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 D++ I G F FA +E + G I LE D+ R + I D V D L + Sbjct: 66 DISFIDGGGEGFVVFACLECALYGEVKIGTALEVSDNS--RKVHI-DGVNEPSDCLTDYC 122 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 IS L PSMD +F+G S+ERRRFLDRMV AIDP H RR+ D+++ MR RNRL +G D+ Sbjct: 123 HISILTPSMDGLFTGPSLERRRFLDRMVLAIDPLHSRRIADYDKTMRARNRLFLDGNEDN 182 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQS 239 +W +++E QMAEL I+ AR+++I L+ + + + FP L + GFL+ D S Sbjct: 183 AWFNALEKQMAELATAISAARIDVIRLLNDMFTQMPSQIPFPRAFLQIDGFLETALGDIS 242 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E++ L R MD + RTL GPHR+DL V Y DK STGEQK +L G+ Sbjct: 243 ATEVEEQFCDLLRRNRAMDRAAGRTLEGPHRTDLQVFYADKNRAATSCSTGEQKALLTGL 302 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L HARL + APILLLDE++AHLD +R ALF I+ D+ Q FMTGTD+ +FD L Sbjct: 303 VLCHARLTGMISQRAPILLLDEMAAHLDSHRRAALFDILDDLSVQTFMTGTDRLLFDDLK 362 Query: 360 ETAKFMRISN 369 A+F I + Sbjct: 363 GRAEFFEIKD 372 >gi|240849791|ref|YP_002971179.1| DNA replication and repair protein RecF [Bartonella grahamii as4aup] gi|240266914|gb|ACS50502.1| DNA replication and repair protein RecF [Bartonella grahamii as4aup] Length = 377 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 166/370 (44%), Positives = 224/370 (60%), Gaps = 6/370 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ ++ L + +RNY + F QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+ Sbjct: 6 HKVAVRQLKLLRYRNYPFFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAYS 65 Query: 63 DVTRIGSPSFFSTF-ARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 DV+ + AR+E + G I LE D+ R + IN V D L + Sbjct: 66 DVSFVDGGGGGFVVFARLECALYGEVKIGTALEVSDNS--RKVHINGVN-ESGDCLTDYC 122 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 IS L PSMD +F G S+ERR FLDRMV AIDP HRRR+ D++R MR RNRL +G D Sbjct: 123 HISVLTPSMDGLFIGPSLERRSFLDRMVLAIDPLHRRRIADYDRAMRARNRLFLDGNEDC 182 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239 +W ++E QMAEL I+ ARV++I L+ + + + FP L + GFL+ + S Sbjct: 183 AWFDALEKQMAELATAISAARVDVIRLLNDMFTQMPSQIPFPRAFLQIDGFLETALSEIS 242 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E++ +L R MD + RTL GPHR+DL V Y DK I STGEQK +L G+ Sbjct: 243 AIEVEEKFCDRLRHNRAMDRAAGRTLEGPHRADLQVFYADKNIAATSCSTGEQKALLTGL 302 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L HARL + APILLLDE++AHLD +R ALF I+ D+ Q FMTGTD+ +FD L Sbjct: 303 VLCHARLTGMMSEKAPILLLDEMAAHLDSHRRAALFDILDDLAVQTFMTGTDRLLFDDLK 362 Query: 360 ETAKFMRISN 369 A+F I + Sbjct: 363 GRAEFFEIKD 372 >gi|319407988|emb|CBI81642.1| DNA replication and repair protein [Bartonella schoenbuchensis R1] Length = 390 Score = 298 bits (764), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 167/370 (45%), Positives = 230/370 (62%), Gaps = 6/370 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ ++ L ++ +RNY S + QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+ Sbjct: 9 HKVTVRQLKLTHYRNYCSFNIHLSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAYS 68 Query: 63 DVT-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 D++ G + F FAR++ + G +I LET D S R + IN V D L + Sbjct: 69 DISFSKGVGAAFVVFARLQCALYGEVNIGTTLETSD--SGRKVHINGVH-ESCDCLTDYC 125 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 +S L PSMD +F G S++RRRFLDRMV AID H RR+ D+++ MR RNRL +G + Sbjct: 126 HVSVLTPSMDGLFMGPSLDRRRFLDRMVLAIDSLHGRRIADYDKAMRARNRLFLDGNENC 185 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239 +W ++EAQMAEL I ARV++I L+ + + FP L + GFL+ S Sbjct: 186 AWFDALEAQMAELATAIAAARVDVIQLLNDMSEQTSSYTPFPRAFLQIDGFLEKALGTTS 245 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E++ +L R +D +RRTL GPHR+DL V Y DK I STGEQK +L G+ Sbjct: 246 AIEVEEQFLDRLRRNRPIDCAARRTLEGPHRTDLQVFYADKNIAATSCSTGEQKALLTGL 305 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L HARL + PILLLDE++AHLD +R ALF I+ D+GSQ FMTGTD+ +FDSL Sbjct: 306 VLCHARLTGMMSNMTPILLLDEMAAHLDSRRRAALFDILDDLGSQTFMTGTDRILFDSLK 365 Query: 360 ETAKFMRISN 369 A+F I + Sbjct: 366 GRAEFFEIED 375 >gi|319898311|ref|YP_004158404.1| DNA replication and repair protein [Bartonella clarridgeiae 73] gi|319402275|emb|CBI75814.1| DNA replication and repair protein [Bartonella clarridgeiae 73] Length = 380 Score = 296 bits (757), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 169/372 (45%), Positives = 230/372 (61%), Gaps = 10/372 (2%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ ++ L ++ +RNY SL L QH + G NG GKTN+LEA+SFLSPGRG RRA+Y+ Sbjct: 9 HKVAVRQLKLANYRNYCSLVLHLLGQHVVLTGRNGAGKTNLLEALSFLSPGRGLRRAAYS 68 Query: 63 DVT---RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 DV+ R G+ F FAR+E + G +I LE D S R + IN + D L Sbjct: 69 DVSFSERKGAG--FVVFARLECALYGEVNIGTALEVND--SSRKVHINGIN-EASDCLTD 123 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + IS L PSMDR+F+G S++RRRFLDRMV +ID H RR+ D++R+MR RNRL + Sbjct: 124 YCHISILTPSMDRLFTGPSLDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDRNN 183 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-D 237 D +W ++E QMAEL I AR+++I L+ + + FP L + GFL+ + Sbjct: 184 DRAWLDALEVQMAELATAIAAARIDVIQLLNDMFAQTSSCIPFPRALLKVDGFLEKALRE 243 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S ++E++ +L R +D + RTL GPHR+DL V Y DK + STGEQK +L Sbjct: 244 TSAIEVEEQFLHRLRKNRAIDCAAGRTLEGPHRTDLQVFYADKNMDATFCSTGEQKALLT 303 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 G+ L HARL S + APILLLDEI+AH D +R ALF I+ D+G Q FMTGTD +FDS Sbjct: 304 GLVLCHARLTSTISNMAPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHVLFDS 363 Query: 358 LNETAKFMRISN 369 L A+F I N Sbjct: 364 LKGRAEFFEIEN 375 >gi|90420504|ref|ZP_01228411.1| DNA replication and repair protein recF [Aurantimonas manganoxydans SI85-9A1] gi|90335232|gb|EAS48985.1| DNA replication and repair protein recF [Aurantimonas manganoxydans SI85-9A1] Length = 407 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 163/367 (44%), Positives = 226/367 (61%), Gaps = 2/367 (0%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L +++FRNY +L L F +FVGDNG GKTN+LEAIS L+PGRG RRA Y DV Sbjct: 21 VRLDELRLADFRNYETLSLRFTRGFVVFVGDNGAGKTNLLEAISLLTPGRGLRRAPYQDV 80 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKL-ETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G FS A + I+ K+ + R ++I++ + DEL LRI Sbjct: 81 ARKGGSGGFSVRANAASLGVETIIATKMMPDPAGAAARSVRIDETAAKSADELLDLLRIL 140 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P+MD +F+G + +RRRFLDRMV A+DP H RR D+ER +R RNRLL + D SW Sbjct: 141 WLTPAMDGLFTGPAGDRRRFLDRMVLAVDPTHGRRAADYERAVRSRNRLLADNRLDDSWL 200 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCA 242 S IEAQMAELG+ + +AR E++ L+ +I FP L LT DG + Sbjct: 201 SGIEAQMAELGIAMALARSELVGMLAGMIARTGAGSPFPSAGLELTSGYDGLDLARPSAD 260 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++E +L R D + RTL G HR++L V + KA+ A STGEQK +L+G+ LA Sbjct: 261 VEDEARMRLRSARYGDRAAGRTLEGAHRAELSVTHLAKAMPAALSSTGEQKALLIGLVLA 320 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HARL++ + P+LLLDEI+AHLD +R ALF ++ ++G Q FMTGTD S+F +L + A Sbjct: 321 HARLVAAMSSLPPLLLLDEIAAHLDPGRRAALFDLIAELGVQAFMTGTDASLFAALGDRA 380 Query: 363 KFMRISN 369 + M +S Sbjct: 381 QIMEVSG 387 >gi|254503692|ref|ZP_05115843.1| RecF/RecN/SMC N terminal domain, putative [Labrenzia alexandrii DFL-11] gi|222439763|gb|EEE46442.1| RecF/RecN/SMC N terminal domain, putative [Labrenzia alexandrii DFL-11] Length = 385 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 157/374 (41%), Positives = 228/374 (60%), Gaps = 9/374 (2%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L ++ FRNYA + + A FVG NG GKTNILEAISFL+ GRG RRA+ D+ Sbjct: 8 RLTRLTLTGFRNYAIMGIGLSAGMVAFVGANGAGKTNILEAISFLTAGRGLRRAALTDIA 67 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDELNKHLRIS 123 R+G +S A++ L DI L T V R ++I+ +R + L ++R+ Sbjct: 68 RVGGDGTWSVSAKIH----LDDIETSLGTGATAGVPGRKVRIDGEDMRSSESLLDYMRVL 123 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WLVPSMD +F+G +RRRFLDR+ AIDP H RR+ DFE +R RN+LL +G D+ + Sbjct: 124 WLVPSMDGLFTGPGSDRRRFLDRLTLAIDPAHGRRVSDFENALRQRNKLLDQGGSDA-YL 182 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S++E Q+A LG ++ AR E + L +I ++ FP LSL G + + + Sbjct: 183 SALELQVASLGTAVSFARQETVGLLKQMIDGRPIENTTFPQAMLSLEGTFEAETIGMSAS 242 Query: 243 LKEEYAKKLFD-GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +E++ ++L + GR D + RTL GPH SDL V + K + A STGEQK +L+G+ L Sbjct: 243 DQEDHYRRLLEQGRHRDRAAGRTLTGPHLSDLKVRHAAKDMPAAQSSTGEQKALLIGLVL 302 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA L + +G P+LLLDE++AHLD D+R ALF + +G Q+FMTGTD S+FD+L Sbjct: 303 AHAELTAKVSGMTPVLLLDEVAAHLDPDRRAALFERLDALGGQVFMTGTDASLFDALPVH 362 Query: 362 AKFMRISNHQALCI 375 ++ + N++A I Sbjct: 363 SEVFEVGNNEARLI 376 >gi|304392439|ref|ZP_07374380.1| DNA replication and repair protein RecF [Ahrensia sp. R2A130] gi|303295543|gb|EFL89902.1| DNA replication and repair protein RecF [Ahrensia sp. R2A130] Length = 391 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 166/377 (44%), Positives = 228/377 (60%), Gaps = 19/377 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRNY +LRL+ D +H + G+NG GKTN+LEAISFLSPGRG RR SY V Sbjct: 11 VAITTLKLDHFRNYDTLRLLCDHRHVVLTGENGSGKTNLLEAISFLSPGRGLRRTSYDQV 70 Query: 65 TRI-GSPS----FFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDEL 116 + GS S ++ A +E G I L+ R V R + IN R ++L Sbjct: 71 AKADGSDSPRSGTWAVHAELETPAGELTIGTGLQ-RGPNGVDGQRRISINGAPKRTSEDL 129 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 + LR+ WLVP+MD +F+G + +RRRFLDRMV AIDP H RR+ D+ER MR RN+LL E Sbjct: 130 LERLRVVWLVPAMDGLFTGAASDRRRFLDRMVLAIDPGHGRRVNDYERAMRSRNKLLDEN 189 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLD 233 D SW IEAQ+AE G I AR E++ LS ++ EN FP +L L G L+ Sbjct: 190 RIDDSWLGGIEAQLAEQGTAIAFARSELVGLLS----DHAAPENASPFPTARLLLEGALE 245 Query: 234 ---GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + S +++ + +L R D + RTL GPHRS+L V + K + A STG Sbjct: 246 EEIARGEGSAADVEDSFRDRLSANRYRDRAAGRTLEGPHRSNLAVIHAPKNMAAALCSTG 305 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 EQK +L G+ LAHA+L++ TG P+LLLDE +AHLD +R ALF ++ IG Q +MTGT Sbjct: 306 EQKALLTGLVLAHAKLVAKLTGIPPVLLLDECAAHLDAQRRAALFDLIDTIGCQAWMTGT 365 Query: 351 DKSVFDSLNETAKFMRI 367 D +F++L + A++ + Sbjct: 366 DAPLFEALGDRAQYFTV 382 >gi|319406519|emb|CBI80161.1| DNA replication and repair protein [Bartonella sp. 1-1C] Length = 370 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 166/368 (45%), Positives = 226/368 (61%), Gaps = 6/368 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RNY SL L H + G NGVGKTN+LEA+SFLSPGRG RRA+Y+D+ Sbjct: 1 MAVRQLKLENYRNYCSLALHLLGHHVVLTGRNGVGKTNLLEALSFLSPGRGLRRAAYSDI 60 Query: 65 T-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + G + F FAR++ + G A+I LE D R + IN V +D L + I Sbjct: 61 SCSEGGGTGFVVFARLQCTLYGEANIGTALEVND--GGRKVHINGVN-EAIDCLMDYCHI 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S L PSMD +F+G +++RRRFLDRMV +ID H RR+ D++R+MR RNRL +G D W Sbjct: 118 SILTPSMDGLFTGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDGNDDRVW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 ++E QMAEL I ARV++I L+ + + FP L + G L+ + S Sbjct: 178 LDALEVQMAELATAIAAARVDVIQLLNDMFAQVSSCIPFPRAFLQVDGCLEKALREMSAI 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++E++ +L + R +D ++ RTL GPHR+DL V Y DK I STGEQK +L G+ L Sbjct: 238 EVEEQFLSRLRNNRAIDCVAGRTLEGPHRTDLKVFYADKNINATLCSTGEQKALLTGLVL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 HARL S + PILLLDEI+AH D +R ALF I+ D+G Q FMTGTD +FDSL Sbjct: 298 CHARLTSMISNMTPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357 Query: 362 AKFMRISN 369 A+F I N Sbjct: 358 AEFFEIEN 365 >gi|319403603|emb|CBI77188.1| DNA replication and repair protein [Bartonella rochalimae ATCC BAA-1498] Length = 370 Score = 288 bits (738), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 166/368 (45%), Positives = 224/368 (60%), Gaps = 6/368 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RNY SL L H +F G NG GKTN+LEA+SFLSPGRG RRA+Y+D+ Sbjct: 1 MAVRQLKLENYRNYCSLVLHLLGHHVVFTGRNGAGKTNLLEALSFLSPGRGLRRAAYSDI 60 Query: 65 TRI-GSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + GS + F FAR++ + G A+I LE D R + IN V D L + I Sbjct: 61 SYSEGSGTGFVVFARLQCALYGEANIGTALEVND--GGRKVHINGVN-EASDCLMDYCHI 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S L PSMD +F G +++RRRFLDRMV +ID H RR+ D++R+MR RNRL +G D W Sbjct: 118 SILTPSMDGLFIGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDGNNDRVW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 ++E QMAEL I ARV++I L+ + FP L + GFL+ + S Sbjct: 178 LDALEVQMAELATAIAAARVDVIQLLNDTFAQVSSCVPFPRAFLQVDGFLEKALREMSAI 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++E++ +L + R +D ++ RTL GPHR+DL V Y DK + STGEQK +L G+ L Sbjct: 238 EVEEQFLNRLRNNRAIDCVAGRTLEGPHRTDLQVFYADKNMNATLCSTGEQKALLAGLVL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 HARL S + PI LLDEI+AH D +R ALF I+ D+G Q FMTGTD +FDSL Sbjct: 298 CHARLTSMISNMTPIFLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357 Query: 362 AKFMRISN 369 A+F I N Sbjct: 358 AEFFEIEN 365 >gi|319405030|emb|CBI78640.1| DNA replication and repair protein [Bartonella sp. AR 15-3] Length = 370 Score = 288 bits (737), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 166/368 (45%), Positives = 225/368 (61%), Gaps = 6/368 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RNY SL L QH + G NGVGKTN+LEA+SFLSPGRG RRA Y+D+ Sbjct: 1 MAVRQLKLENYRNYCSLALHLLGQHVVLTGRNGVGKTNLLEALSFLSPGRGLRRAPYSDI 60 Query: 65 T-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + GS + F FAR++ + G A+I LE D R + IN V D L + I Sbjct: 61 SCSEGSGTGFVVFARLQCALYGEANIGTALEAND--GGRKVHINGVN-EASDCLMDYCHI 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S L PSMD +F+G +++RRRFLDRMV +ID H RR+ D++R+MR RNRL + D +W Sbjct: 118 SILTPSMDGLFTGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDRNDDRAW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFC 241 ++E QMAEL I ARV++I L+ + + FP L + GFL+ + S Sbjct: 178 LDALELQMAELATAIAAARVDIIQLLNDMFAQVSAWIPFPRAFLQVDGFLEKALSETSAI 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++E++ +L + R +D + R L GPHR+DL V Y DK + STGEQK +L G+ L Sbjct: 238 EVEEQFLYRLRNNRAIDCAAGRALEGPHRTDLQVFYADKNMDATFCSTGEQKALLTGLVL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 HARL S + PILLLDEI+AH D +R ALF I+ D+G Q FMTGTD +FDSL Sbjct: 298 CHARLTSTISKMTPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357 Query: 362 AKFMRISN 369 A+F I N Sbjct: 358 AEFFEIEN 365 >gi|49473790|ref|YP_031832.1| recombination protein F [Bartonella quintana str. Toulouse] gi|49239293|emb|CAF25619.1| DNA replication and repair protein recF [Bartonella quintana str. Toulouse] Length = 377 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 166/370 (44%), Positives = 233/370 (62%), Gaps = 6/370 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ ++ L + +RNY+S + F QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+ Sbjct: 6 HKVTVRQLRLVRYRNYSSFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAYS 65 Query: 63 DVTRIGSP-SFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 DV+ S + F FAR++ + G DI + DD S R + IN V + D L + Sbjct: 66 DVSFADSGNTGFVVFARLQCALYGEVDIGTAWDI-DDNS-RKVHINGVN-KTGDCLTDYC 122 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 +S L PSMD +F+G S+ERRRFLDRMV AIDP H RR++D++R MR RNRL ++G D Sbjct: 123 HMSVLTPSMDGLFTGSSLERRRFLDRMVLAIDPFHGRRIMDYDRAMRARNRLFSDGSEDR 182 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239 +W ++E QMAEL I AR+++I L+ + + FP L + GFL+ + S Sbjct: 183 AWFDALEKQMAELATAIAAARIDIIRLLNGMFAQAPVHTPFPRAFLQVDGFLETALSKAS 242 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E++ +L R +D + RTL GPHR+DL + Y DK + A STGEQK ++ G+ Sbjct: 243 AIEVEEQFCDRLQHNRAIDRAAGRTLEGPHRTDLQIFYADKNMAAASCSTGEQKALVTGL 302 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L HARL + APILLLDEI AHLD +R ALF ++ D+G Q FMTGTD +FD+L Sbjct: 303 VLCHARLTGIMSERAPILLLDEIVAHLDSHRRAALFDLLDDLGGQTFMTGTDPILFDALK 362 Query: 360 ETAKFMRISN 369 A+F I + Sbjct: 363 GRAEFFEIKD 372 >gi|328541627|ref|YP_004301736.1| DNA replication and repair protein recF [polymorphum gilvum SL003B-26A1] gi|326411379|gb|ADZ68442.1| DNA replication and repair protein recF [Polymorphum gilvum SL003B-26A1] Length = 377 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 158/380 (41%), Positives = 225/380 (59%), Gaps = 15/380 (3%) Query: 1 MTNRIKIKF--LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 M++R+ + L +++FRNY+ L L A VGDNG GKTNILEAIS L+ GRG RR Sbjct: 1 MSSRVSVAIERLTLTDFRNYSLLVLEPSAPLVALVGDNGAGKTNILEAISLLTAGRGLRR 60 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 A+ AD+ R+ P ++ A + G + I + R ++I+ R + L Sbjct: 61 AALADIARLDGPGGWAISALLRTQAG--ETVIGTGYTPGEAGRRVRIDGTEARSSEALLD 118 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 HLR+ WLVPSMD +F+G ERRRFLDR+ ++DP H RR+ D+ER +R RNRLL EG Sbjct: 119 HLRVLWLVPSMDGLFTGPGSERRRFLDRLTLSLDPTHGRRVNDYERALRQRNRLLEEGG- 177 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFD 237 +++ SIE Q+AELG + +AR E ++ L I + FP L++ DG+F+ Sbjct: 178 SAAYLDSIERQVAELGAAVALARGETVSLLQGCIDAQAATGLPFPRALLAV----DGEFE 233 Query: 238 ---QSFCALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 Q A E + L DGR D + RTL GPHRSDL+V + K I A STGEQ Sbjct: 234 VETQGLGASDREDRLRRMLRDGRTRDRAAGRTLCGPHRSDLVVQHAAKGIPAAQSSTGEQ 293 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 K +LVG+ LAHA L + G P+LLLDEI+AHLD +R ALF + + Q+ MTGTD Sbjct: 294 KALLVGLILAHADLTAAVAGMTPVLLLDEIAAHLDPGRRAALFSRLEALACQVVMTGTDA 353 Query: 353 SVFDSLNETAKFMRISNHQA 372 +F+++ ++ + ++ ++A Sbjct: 354 GLFEAMPAGSEILAVAGNRA 373 >gi|307942710|ref|ZP_07658055.1| DNA replication and repair protein RecF [Roseibium sp. TrichSKD4] gi|307773506|gb|EFO32722.1| DNA replication and repair protein RecF [Roseibium sp. TrichSKD4] Length = 379 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 238/370 (64%), Gaps = 6/370 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L+++ FRNYASL L AQ FVG NG GKTNILEA+S+L+ GRG RRA+ AD+T Sbjct: 8 RLNRLSLTNFRNYASLDLDLAAQLVAFVGANGTGKTNILEAVSYLTAGRGLRRANLADIT 67 Query: 66 -RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +S ++V+ +GL D+SI + + + R ++I+ V R D L ++RI W Sbjct: 68 CKQVQEGGWSVASKVD-QDGL-DVSIGTGLKQNEAGRRVRIDGVDQRTSDSLLDYVRILW 125 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MD +F+G +RRRFLDR+ +++P H R++ FE+ +R RNRLL +G +S+ + Sbjct: 126 LIPAMDGLFTGPGSDRRRFLDRLTLSLNPAHGRQVSSFEKALRQRNRLLEQGG-SASYLT 184 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCAL 243 ++E Q+AELG + ++R E ++ L + E + FP L LTG + + + + Sbjct: 185 AVEQQVAELGTSVALSRRETVSLLQGTLSEQAELGLPFPIAGLELTGDFEAETEGLSASD 244 Query: 244 KEEYAKKLF-DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +E++ +KL DGR D + RTL GPH SDL V + K + + STGEQK +L+G+ LA Sbjct: 245 QEDHFRKLLEDGRPRDRAAGRTLTGPHLSDLHVRHTAKDMPASQSSTGEQKALLIGLILA 304 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L ++ +G PILLLDE++AHLD ++R ALF + +G Q+FMTGTD+S+F+SL + Sbjct: 305 HADLSASVSGLTPILLLDEVAAHLDPNRREALFARLDALGCQVFMTGTDESLFESLPIPS 364 Query: 363 KFMRISNHQA 372 + I + +A Sbjct: 365 QIFAIEDGKA 374 >gi|121602459|ref|YP_989526.1| recombination protein F [Bartonella bacilliformis KC583] gi|120614636|gb|ABM45237.1| DNA replication and repair protein recF [Bartonella bacilliformis KC583] Length = 378 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 162/370 (43%), Positives = 225/370 (60%), Gaps = 6/370 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ + L ++ +RNY L + F ++H +F G NG GKTN+LEA+SFL+PGRG RRA+Y+ Sbjct: 2 HRVAVTQLKLAHYRNYHFLNVNFSSRHVVFTGHNGAGKTNLLEALSFLAPGRGLRRAAYS 61 Query: 63 DVT-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 DV+ G F FAR++ + G I LE S R L IN D L + Sbjct: 62 DVSCSRGEGEGFVVFARLQCALYGEVSIGTALEAGG--SNRRLHINGEN-EACDCLTDYC 118 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 IS L PSMD +F G +++RRRFLDRMV AID H RR+ D+++ MR RNRL +G D Sbjct: 119 HISALTPSMDGLFMGPTLDRRRFLDRMVLAIDSLHGRRIADYDKAMRARNRLFADGNDDR 178 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239 +W +++E QMAEL I AR++++ L+ ++ FP L + G L+ + S Sbjct: 179 AWFNALEMQMAELATAIAAARIDVVQLLNDTFVQMSASIPFPRAFLQIDGSLEEALRKMS 238 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++EE+ +L R MD + RTL GPHR+DL V Y DK + A STGEQK +L+G+ Sbjct: 239 AVDVEEEFLDRLRRNRAMDRAAGRTLEGPHRTDLQVFYADKNMAAASCSTGEQKALLIGL 298 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L HA L + API LLDE++AHLD +R ALF I+ D+G Q FMTGTD+ +FDSL Sbjct: 299 VLCHAHLTGVMSNMAPIFLLDEMAAHLDFYRRAALFDILDDLGGQTFMTGTDRILFDSLK 358 Query: 360 ETAKFMRISN 369 A+F I + Sbjct: 359 GRAEFFEIED 368 >gi|254472181|ref|ZP_05085581.1| DNA replication and repair protein [Pseudovibrio sp. JE062] gi|211958464|gb|EEA93664.1| DNA replication and repair protein [Pseudovibrio sp. JE062] Length = 376 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 225/369 (60%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FRNY++ + +++ FVGDNG GKTNILEAISFLS GRG RRA+ D+ Sbjct: 7 VALSRLALTDFRNYSAASVELNSRMIAFVGDNGAGKTNILEAISFLSAGRGLRRATLGDI 66 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R ++ A ++G G I L + R ++I+ R + L ++LR+ W Sbjct: 67 ARADGAGGWAVSAVLDGEYGETRIGTGLTAGEPG--RRVRIDGEEARSSEALLEYLRVLW 124 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVPSMD +F+G + +RR+FLDR+V +++P H R + FE+ +R RNRLL+EG + Sbjct: 125 LVPSMDGLFTGSASDRRKFLDRLVLSLNPSHGRMVASFEKALRQRNRLLSEGG-TPEFLD 183 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTG-FLDGKFDQSF 240 +IEAQ+AELG + +AR E ++ L+ + QK+ FP ++ L G F S Sbjct: 184 AIEAQVAELGTAVALARSETVSLLAKTL--ETQKQLGLPFPSAEIHLQGAFETATIGMSA 241 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ Y + L +GR D + RTL GPHRSDL V + +K + A STGEQK +L+G+ Sbjct: 242 SDREDCYRELLVEGRFRDRAAGRTLDGPHRSDLYVVHSEKQMPAAQASTGEQKALLIGLV 301 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHA L S+ +G PILLLDE++AHLD +R ALF + +G Q+FMTGTD+++F L Sbjct: 302 LAHADLTSSISGMTPILLLDEVAAHLDPGRREALFTRLEVLGGQVFMTGTDQNLFKDLPS 361 Query: 361 TAKFMRISN 369 A+ + Sbjct: 362 AAQIFEVEG 370 >gi|115522033|ref|YP_778944.1| recombination protein F [Rhodopseudomonas palustris BisA53] gi|115515980|gb|ABJ03964.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris BisA53] Length = 379 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 211/369 (57%), Gaps = 6/369 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNYA+ L +A + G NG GKTN LEAIS LSPGRG RRA+ D+ Sbjct: 5 RIHRLTLTHFRNYAAASLRVNADLVVLAGPNGAGKTNCLEAISLLSPGRGLRRATLDDIA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV----RCLQINDVVIRVVDELNKHLR 121 ++ A +EG GLA + ++ R D + RC +I+ + HLR Sbjct: 65 DNQGDGSWAVSAEIEGALGLATLGTGIDPRGDEAASTTRRC-RIDRENVGSAAAFGDHLR 123 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + WL P+MD +F G + ERRRF DR+V AID +H R+ +R +R RNRLL + D+ Sbjct: 124 MVWLTPAMDALFMGAASERRRFFDRLVLAIDSQHSARVSALDRSLRSRNRLLEQRSGDTH 183 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSF 240 W ++E + AEL V + R E L++ + FP +++L G+++G + Sbjct: 184 WLDAVERETAELAVAVAAMRGETATRLAAALSARGAASPFPSAEIALDGWMEGALRSEPA 243 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A+++ Y L DGR D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ Sbjct: 244 TAVEDRYRAILRDGRPRDAAAGRTLDGPHLTDLRVIYAPKAMPARDASTGEQKALLIGLI 303 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHA L++ TG P+LLLDE+ AHLD +R ALF + +G+Q++MTG D + F L Sbjct: 304 LAHAHLVAEMTGITPLLLLDEVVAHLDPSRRRALFEELAKLGAQVWMTGADPAAFVDLGA 363 Query: 361 TAKFMRISN 369 + + + N Sbjct: 364 SGEMFEVDN 372 >gi|86747131|ref|YP_483627.1| recombination protein F [Rhodopseudomonas palustris HaA2] gi|86570159|gb|ABD04716.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris HaA2] Length = 378 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 210/367 (57%), Gaps = 3/367 (0%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY + L A+ + VG NG GKTN LEAISFLSPGRG RRA+ DV Sbjct: 5 RITRLTLTHFRNYRAAVLTTSAERVVLVGANGAGKTNCLEAISFLSPGRGLRRATLDDVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ A VEG GLA + ++ D + R +I+ + HLR+ Sbjct: 65 DNEGDGSWAVAAEVEGALGLATLGTGIDPPRADAATSRRCRIDREPVGSATAFGDHLRMV 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P+MD +F G + ERRRF DR+V AID +H R+ +R +R RNRLL Y D+ W Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSQHSGRVSALDRSLRSRNRLLEVRYPDAHWL 184 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242 +IE + AEL V + R + L++++ FP K+ L G+++ + A Sbjct: 185 DAIERETAELAVAVAAMRGQTAMRLAAMLDARGAASAFPSAKIMLDGWMESALLTEPATA 244 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ Y L +GR D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ LA Sbjct: 245 VEDRYRTILREGRPRDAAAGRTLDGPHLTDLEVVYAPKAMPARDASTGEQKALLIGLVLA 304 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA+L+S TG P+LLLDE+ AHLD +R ALF + +G+Q++MTG D + F + A Sbjct: 305 HAQLVSEMTGITPLLLLDEVVAHLDPSRRAALFEELAKLGAQVWMTGADPAAFAEIGSGA 364 Query: 363 KFMRISN 369 + + + Sbjct: 365 EIFTVES 371 >gi|148251630|ref|YP_001236215.1| recombination protein F [Bradyrhizobium sp. BTAi1] gi|146403803|gb|ABQ32309.1| DNA replication and repair protein RecF [Bradyrhizobium sp. BTAi1] Length = 378 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 144/359 (40%), Positives = 209/359 (58%), Gaps = 5/359 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FR+Y + + A VG NG GKTN LEAISF +PGRG RRA+ DV Sbjct: 5 RINRLALTHFRSYRAASVSVQADMVALVGANGAGKTNCLEAISFFAPGRGLRRATLEDVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSV--RCLQINDVVIRVVDELNKHLRI 122 ++ A +EG GLA +E R+D ++ RC +I+ + H+R+ Sbjct: 65 DNQGDGSWAISAEIEGALGLATFGTGIEPPRNDAAIVRRC-RIDREPVGSAAAFGDHIRM 123 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P+MD +F G + ERRRF DR+V AID H R+ ER +R RNRLL FD W Sbjct: 124 VWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNFDDHW 183 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 C +IE + AEL V + +R + L++++ + Q FP +++L G+++ + Sbjct: 184 CDAIERETAELAVAVAASRGQTAVKLAAMLRQRGQASAFPSAEIALAGWMENALLTEPAL 243 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y L D R D+ + RTL GPH +DL V Y K++ STGEQK +L+G+ L Sbjct: 244 AVEDRYRALLRDNRARDAAAGRTLDGPHLTDLHVIYAPKSMPARDASTGEQKALLIGLIL 303 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 AHA L++ TTG P+LLLDEI AHLD +R ALF + +G+Q+++TG D + F L E Sbjct: 304 AHATLVAETTGIVPMLLLDEIVAHLDPGRRTALFAELGTLGAQVWLTGADPAAFAELRE 362 >gi|27375938|ref|NP_767467.1| recombination protein F [Bradyrhizobium japonicum USDA 110] gi|27349076|dbj|BAC46092.1| DNA replication and repair protein [Bradyrhizobium japonicum USDA 110] Length = 378 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 142/354 (40%), Positives = 207/354 (58%), Gaps = 5/354 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY + L A VG NG GKTN +EAISFLSPGRG RRA+ DV Sbjct: 5 RIHRLTLTHFRNYRAAGLETAADMVALVGPNGAGKTNCIEAISFLSPGRGLRRATLEDVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSV--RCLQINDVVIRVVDELNKHLRI 122 ++ A+VEG GLA + +E R D +V RC +I+ + H+R+ Sbjct: 65 DNQGDGSWAVSAQVEGALGLATLGTGIEPPRADAAVSRRC-RIDREPVNSAAAFGDHIRM 123 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P+MD +F G + ERRRF DR+V AID H R+ ER +R RNRLL +D W Sbjct: 124 VWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRINALERSLRSRNRLLETRNYDDHW 183 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 C +IE + AEL V + R + L+ ++ Q FP +++L G+++ ++ Sbjct: 184 CDAIERETAELAVAVAATRGQTAARLTGMLSARAQASAFPSAQIALDGWMENALLRETAT 243 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++++ Y + L D R D+++ RT GPH +DL V Y K + STGEQK +L+G+ L Sbjct: 244 SVEDRYRQILRDNRPRDAIAGRTTDGPHLTDLQVIYAPKGMPARDASTGEQKALLIGLVL 303 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 AHA L++ TG P+LLLDE+ AHLD ++R ALF + +G+Q+++TG D + F Sbjct: 304 AHATLVAEMTGIVPLLLLDEVVAHLDPNRRAALFEELKKLGAQVWLTGADPAAF 357 >gi|90421531|ref|YP_529901.1| recombination protein F [Rhodopseudomonas palustris BisB18] gi|90103545|gb|ABD85582.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris BisB18] Length = 379 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 207/368 (56%), Gaps = 5/368 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI L ++ FRNY + + + VG NG GKTN LEAIS LSPGRG RRA+ D+ Sbjct: 5 KIHRLTLTHFRNYRAASVTVRGDVVVLVGPNGAGKTNCLEAISLLSPGRGLRRATLDDIA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLRI 122 ++ A VEG GLA + ++ R + + RC +I+ + HLR+ Sbjct: 65 DNHGDGSWAVSAEVEGALGLATLGTGIDPRTEAAATTRRC-RIDRENVGSAAAFGDHLRM 123 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P+MD +F G + ERRRF DR+V AID +H R+ +R +R RNRLL + DS W Sbjct: 124 VWLTPAMDGLFLGAASERRRFFDRLVLAIDSQHSSRVSALDRSLRSRNRLLEQRSHDSHW 183 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 +IE + AEL V + R E + L++ + + FP ++L G+++ + Sbjct: 184 LDAIERETAELAVAVAAMRGETVTRLAAALAQRSADSAFPSATIALDGWMENALRSEPAT 243 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y L D R D+ + RTL GPH +DL V Y K + STGEQK +L+G+ L Sbjct: 244 AVEDRYRTSLRDNRARDAAAGRTLDGPHLTDLRVIYTPKNMPARDASTGEQKALLIGLVL 303 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA L++ TG P+LLLDE+ AHLD +R ALF + +G+Q++MTG D + F L E Sbjct: 304 AHAYLVAEMTGITPLLLLDEVVAHLDPSRRKALFGELARLGAQVWMTGADPAAFVDLGEG 363 Query: 362 AKFMRISN 369 + + N Sbjct: 364 GELFEVDN 371 >gi|299133397|ref|ZP_07026592.1| DNA replication and repair protein RecF [Afipia sp. 1NLS2] gi|298593534|gb|EFI53734.1| DNA replication and repair protein RecF [Afipia sp. 1NLS2] Length = 383 Score = 271 bits (694), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 137/354 (38%), Positives = 205/354 (57%), Gaps = 4/354 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L++++FR+Y + + + VG NG GKTN LEAIS L+PGRG RRA + D+ Sbjct: 9 RILRLSLTQFRSYRAASVTTRGDLVVLVGPNGAGKTNCLEAISLLAPGRGLRRARFEDIA 68 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ A VEG GLA + ++ D + R ++I+ + +HLR+ Sbjct: 69 NRAGDGSWAVSAEVEGAGGLATLGTGIDAPTGEDGSAKRRIRIDREAVSSASAFGEHLRM 128 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL PSMD +F+G + ERRR DR+V AID H R+ ER +R RNRLL + FD+ W Sbjct: 129 VWLTPSMDGLFTGPASERRRLFDRLVLAIDKDHSSRVSALERSLRSRNRLLEDRNFDAHW 188 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 C +IE + AEL V + R + LS+++ FP +++L G+++ + Sbjct: 189 CEAIERETAELAVAVAAQRGHTLQRLSAMLAARGATSAFPSARITLDGWMENALMSEPAT 248 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y L R +D+ + RTL GPH +DL V Y K + STGEQK +L+G+ L Sbjct: 249 AVEDHYRDILRKSRLLDAAAGRTLNGPHLTDLHVIYAPKEMPAKEASTGEQKALLIGLIL 308 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 AHA L++ TG P+LLLDE+ AHLD +R ALF + +G+Q++MTG D + F Sbjct: 309 AHASLVAEMTGIVPLLLLDEVVAHLDPRRRAALFDELATLGAQVWMTGADPAAF 362 >gi|91974485|ref|YP_567144.1| recombination protein F [Rhodopseudomonas palustris BisB5] gi|91680941|gb|ABE37243.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris BisB5] Length = 378 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 209/367 (56%), Gaps = 3/367 (0%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY + L + + VG NG GKTN LEAISFLSPGRG RRA+ DV+ Sbjct: 5 RITRLTLTHFRNYRAAALHTRGERVVLVGANGAGKTNCLEAISFLSPGRGLRRATLDDVS 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ A VEG GLA + ++ D + R +I+ + HLR+ Sbjct: 65 DHQGDGSWAVSAEVEGALGLATLGTGIDPPRADAATTRRCRIDREPVGSATAFGDHLRMV 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P+MD +F G + ERRRF DR+V AID +H R+ +R +R RNRLL E D W Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSQHSSRVSALDRSLRSRNRLLEERNADRHWL 184 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242 +IE + AEL V + R + L++++ FP K+ L G+++ + A Sbjct: 185 DAIERETAELAVAVAAMRGQTAARLAAMLDARGAASAFPSAKIMLDGWMESALLTEPATA 244 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ Y L DGR D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ LA Sbjct: 245 VEDRYRAILRDGRLRDAAAGRTLDGPHLTDLQVIYAPKAMPARDASTGEQKALLIGLVLA 304 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA+L+S TG P+LLLDE+ AHLD +R ALF + +G+Q++MTG D + F + A Sbjct: 305 HAQLVSEITGITPLLLLDEVVAHLDPARRRALFAELERLGAQVWMTGADPAGFAEIGPDA 364 Query: 363 KFMRISN 369 + + + Sbjct: 365 EIFTVES 371 >gi|154250461|ref|YP_001411285.1| DNA replication and repair protein RecF [Parvibaculum lavamentivorans DS-1] gi|154154411|gb|ABS61628.1| DNA replication and repair protein RecF [Parvibaculum lavamentivorans DS-1] Length = 412 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 220/370 (59%), Gaps = 4/370 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 + R ++ L +++FR+YA L D + + G+NG GKTN+LEA+S LSPGRG R A+Y Sbjct: 30 SPRARLSRLVVTDFRSYARAELALDGRPVVLTGENGAGKTNLLEAVSLLSPGRGLRGAAY 89 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHL 120 A++ R ++ A +E G + +E S R + D L HL Sbjct: 90 AEIARDNGEGGWAVAATLEAEHGPVRLGTGIEPGMAPSSRSRSVRIDGEPAGPSALAAHL 149 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 RI WL P+MDR+F + ERRRFLDR+V DP H R +ER +R R++LL + FD Sbjct: 150 RIVWLTPAMDRLFVEGASERRRFLDRLVMGFDPAHGTRAAAYERALRERSKLLADDVFDD 209 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W S +E+QMAE GV + AR+E++ L ++ + FP ++L G L+ ++ Sbjct: 210 AWLSGLESQMAEHGVALAAARLEIVARLRG-ALDVAPEGPFPRAHVALEGSLETALAEAA 268 Query: 241 CA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +++ + +L + R D+ + R L GPHRSDL+V + K STGEQK +L+GI Sbjct: 269 AVDVEDGFRARLAEMRGRDAAAGRALDGPHRSDLLVRHTAKDREARQCSTGEQKALLIGI 328 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA+ARL++ G AP+LLLDE++AHLD +R ALF + +G Q FMTGTD S+F++L Sbjct: 329 VLANARLLA-AMGRAPLLLLDEVAAHLDAGRRAALFDEIVSLGLQAFMTGTDPSLFETLG 387 Query: 360 ETAKFMRISN 369 E A+ +R+++ Sbjct: 388 ERAQDLRVAH 397 >gi|39933083|ref|NP_945359.1| recombination protein F [Rhodopseudomonas palustris CGA009] gi|39652708|emb|CAE25447.1| putative RecF protein [Rhodopseudomonas palustris CGA009] Length = 388 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 204/370 (55%), Gaps = 4/370 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY L A + VG NG GKTN LEAISFLSPGRG RRA+ DV Sbjct: 14 RITRLTLTHFRNYRGASLTTTADQVVLVGPNGAGKTNCLEAISFLSPGRGLRRATLEDVA 73 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ +EG GLA + +E D + R +I+ + HLR+ Sbjct: 74 NHEGDGSWAVSTEIEGALGLATLGTGIEPPRGDTTTTRRCRIDREPVGSAAAFGDHLRMV 133 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182 WL PSMD +F G + ERRRF DR+V AID H R+ +R +R RNRLL + DS W Sbjct: 134 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDVRNADSHW 193 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 +IE + AEL + + R + L++++ FP KL L G+++ + Sbjct: 194 LDAIERETAELAIAVAAQRGQTALKLAAMLDARGATSAFPSAKLMLDGWMENALTSEPAT 253 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y L D R D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ L Sbjct: 254 AVEDRYRAILRDSRGRDAAAGRTLDGPHLTDLEVIYAPKAMPARDASTGEQKALLIGLVL 313 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA+L++ TT P+LLLDE+ AHLD +R ALF + +G+Q++MTG D F + Sbjct: 314 AHAQLVAETTSITPLLLLDEVVAHLDPGRREALFTELGKLGAQVWMTGADPMAFAEIGPA 373 Query: 362 AKFMRISNHQ 371 A + N Q Sbjct: 374 AGIFDVENGQ 383 >gi|146337178|ref|YP_001202226.1| recombination protein F [Bradyrhizobium sp. ORS278] gi|146189984|emb|CAL73976.1| DNA replication and repair protein recF [Bradyrhizobium sp. ORS278] Length = 378 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 145/359 (40%), Positives = 206/359 (57%), Gaps = 5/359 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L+++ FR+Y + + A VG NG GKTN LEAISF +PGRG RRA+ DV Sbjct: 5 RINRLSLTHFRSYRAAGVSVQADMVALVGANGAGKTNCLEAISFFAPGRGLRRATLEDVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSV--RCLQINDVVIRVVDELNKHLRI 122 ++ A +EG GLA +E R D S RC +I+ + H+R+ Sbjct: 65 DNQGDGSWAISAEIEGALGLATFGTGIEPPRGDASTTRRC-RIDREPVGSAAAFGDHIRM 123 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL PSMD +F G + ERRRF DR+V AID H R+ ER +R RNRLL FD W Sbjct: 124 VWLTPSMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNFDDHW 183 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 C +IE + AEL V + +R + L++++ + FP +++L G+++ + Sbjct: 184 CDAIERETAELAVAVAASRGQTAVKLAAMLRQRGAASAFPSAEIALDGWMENALLTEPAL 243 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y L D R D+ + RTL GPH +DL V Y K + STGEQK +L+G+ L Sbjct: 244 AVEDRYRALLRDNRARDAAAGRTLDGPHLTDLHVIYAPKNMPARDASTGEQKALLIGLIL 303 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 AHA L++ TTG P+LLLDEI AHLD +R ALF + +G+Q+++TG D + F L E Sbjct: 304 AHATLVAETTGIVPMLLLDEIVAHLDPGRRTALFAELGTLGAQVWLTGADPAAFAELRE 362 >gi|192288436|ref|YP_001989041.1| recombination protein F [Rhodopseudomonas palustris TIE-1] gi|192282185|gb|ACE98565.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris TIE-1] Length = 379 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 204/368 (55%), Gaps = 4/368 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY L A + VG NG GKTN LEAISFLSPGRG RRA+ DV Sbjct: 5 RITRLTLTHFRNYRGASLTTTADQVVLVGPNGAGKTNCLEAISFLSPGRGLRRATLEDVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ A VEG GLA + +E D + R +I+ + HLR+ Sbjct: 65 NHEGDGSWAVSAEVEGALGLATLGTGIEPPRGDTPTTRRCRIDREPVGSAAAFGDHLRMV 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182 WL PSMD +F G + ERRRF DR+V AID H R+ +R +R RNRLL + DS W Sbjct: 125 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDIRNADSHW 184 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 +IE + AEL + + R + L++++ FP KL L G+++ + Sbjct: 185 LDAIERETAELAIAVAAQRGQTALKLAAMLDARGATSAFPSAKLMLDGWMENALTSEPAT 244 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y L D R D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ L Sbjct: 245 AVEDRYRAILRDSRGRDAAAGRTLDGPHLTDLEVIYAPKAMPARDASTGEQKALLIGLVL 304 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA+L++ TT P+LLLDE+ AHLD +R ALF + +G+Q++MTG D F + Sbjct: 305 AHAQLVAETTSITPLLLLDEVVAHLDPGRREALFTELGKLGAQVWMTGADPMAFAEIGPA 364 Query: 362 AKFMRISN 369 A + + Sbjct: 365 AGIFDVES 372 >gi|158422636|ref|YP_001523928.1| recombination protein F [Azorhizobium caulinodans ORS 571] gi|158329525|dbj|BAF87010.1| DNA replication and repair protein [Azorhizobium caulinodans ORS 571] Length = 378 Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 215/364 (59%), Gaps = 4/364 (1%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R +++ L +S FR+Y++ ++ + G NG GKTNILEA+S LSPGRG RRA+ Sbjct: 5 RARVRRLTLSRFRSYSAAQIEVADGPVVLTGPNGAGKTNILEAVSLLSPGRGLRRAALDA 64 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + G ++ A VEG G D+ + +R D S R +I+ + + HL++ Sbjct: 65 FAQAGGDGSWAVAAHVEGALGPVDLGTGSDASRPDGSTRRCRIDRESVSSANAFLDHLKV 124 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P MD +F+G +RRRFLDR+V A+D H R+ ER +R RNR+L +G D+ Sbjct: 125 VWLTPEMDGLFTGPPADRRRFLDRLVLAVDASHGTRVNALERALRSRNRVLEDGG-DNRM 183 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKF-DQSF 240 S++E ++AELGV + AR+E + L+ I + + FPH ++L G L+ D Sbjct: 184 LSAVEHELAELGVAVAAARLETVQRLAGEIAAHADETSPFPHADIALDGALERMLTDAPA 243 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +++ Y L D R D + RTL GPH DL+V + K + A STGEQK +L+G+ Sbjct: 244 VEVEDRYRALLQDNRPRDRAAGRTLEGPHLCDLVVAHGPKGLPAARCSTGEQKSLLIGLA 303 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+HARL++ G AP++LLD++ A+LD ++R+ +F + +G+Q++MTG D S F +L+ Sbjct: 304 LSHARLVTAMQGLAPVVLLDDVVAYLDAERRSGMFAALKALGAQVWMTGADPSAFAALDG 363 Query: 361 TAKF 364 +F Sbjct: 364 AERF 367 >gi|288959568|ref|YP_003449909.1| DNA replication and repair protein [Azospirillum sp. B510] gi|288911876|dbj|BAI73365.1| DNA replication and repair protein [Azospirillum sp. B510] Length = 394 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 216/371 (58%), Gaps = 10/371 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + ++ FR Y S+RL D + +G NG GKTN+LEA+SFL+PGRG R A A+V R Sbjct: 20 VRRMTLTRFRGYDSVRLEPDHRPVALIGPNGAGKTNLLEAVSFLAPGRGLRGARLAEVER 79 Query: 67 IGSP--SFFSTFARVEGMEGLADISIKLETRD-----DRSVRCLQINDVVIRVVDELNKH 119 +GSP + ++ A ++ G +I E D DR R ++I+ + L +H Sbjct: 80 LGSPPGAGWAVAATLDTPLGPVEIGTGREPHDGNRASDRDRRLVRIDGHPAKGQTALAEH 139 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + + WL P MDR+F + RRRFLDR+VF DP H R+ +E +R R RLL +G FD Sbjct: 140 VAMVWLTPQMDRLFLEGASGRRRFLDRLVFGFDPAHAGRLSRYEHALRERARLLRDGRFD 199 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 W ++E QMA G+ + AR E++ L + + FP L++ G ++ D+ Sbjct: 200 EGWLGALEDQMATTGIAVAAARREVVQRLRAACARSIGP--FPAADLAVAGTVERWLDEG 257 Query: 240 FCALKEEYAK-KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 E+ + L GR+ D+ +GPH+SDL V + K + A STGEQK +L+ Sbjct: 258 PALAAEDSLRDSLRLGRRADADGGGATLGPHKSDLAVRHAPKDMPAALCSTGEQKALLIA 317 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 I LA+ARL++ G APILLLDE++AHLD ++R ALF + +G+Q +MTGTD+ +F+ L Sbjct: 318 IVLANARLLAAERGAAPILLLDEVAAHLDPERRAALFGEILALGAQAWMTGTDEGIFNPL 377 Query: 359 NETAKFMRISN 369 E A+ RI + Sbjct: 378 GEDARRFRIED 388 >gi|75674202|ref|YP_316623.1| recombination protein F [Nitrobacter winogradskyi Nb-255] gi|74419072|gb|ABA03271.1| DNA replication and repair protein RecF [Nitrobacter winogradskyi Nb-255] Length = 385 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 211/367 (57%), Gaps = 6/367 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +++ L+++ FRNY + + + VG NG GKTN LEAIS LSPGRG RRA+ D+ Sbjct: 9 RVRRLSLTHFRNYRAATFETRSNMIVLVGPNGAGKTNCLEAISLLSPGRGLRRATRDDIA 68 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV----RCLQINDVVIRVVDELNKHLR 121 ++ A ++G GLA + ++ + + RC +I+ + HLR Sbjct: 69 DNTGDGSWAVSAEMQGALGLATLGTGIDAPGNEAAPSGRRC-RIDREPVASAAAFGDHLR 127 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + WL PSMD +F+G + +RRRFLDR+V AID H R+ ER +R RNRLL + D Sbjct: 128 MVWLTPSMDGLFTGPASDRRRFLDRLVLAIDSEHSGRVSALERSLRSRNRLLEMRHHDDL 187 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSF 240 WC +IE + AEL V + R + + L++ + +FP + L G+++ + Sbjct: 188 WCEAIERKTAELAVAVAAMRAQTVTRLTAALEARGGGSSFPAASIHLDGWMENALLTEPA 247 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +++ Y + L R D+ + RTL GPH +DL V Y K + STGEQK +L+G+ Sbjct: 248 TVVEDRYREILRASRPRDAAAGRTLEGPHLTDLEVIYAPKNMPAKEASTGEQKALLIGLV 307 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL++ TG P+LLLDE+ AHLD D+R ALF + +G+Q++M+G D + F +L+ Sbjct: 308 LAHARLVAEMTGIIPLLLLDEVVAHLDPDRRGALFGELAGLGAQVWMSGADPAAFANLSA 367 Query: 361 TAKFMRI 367 ++ R+ Sbjct: 368 GSETFRV 374 >gi|316931399|ref|YP_004106381.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris DX-1] gi|315599113|gb|ADU41648.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris DX-1] Length = 394 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 203/368 (55%), Gaps = 4/368 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY S L A + VG NG GKTN LEA+S LSPGRG RRA D+ Sbjct: 20 RITRLTLTHFRNYRSASLTTTADQVVLVGPNGAGKTNCLEAVSLLSPGRGLRRARLEDIA 79 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ A VEG GLA + +E D + R +I+ + HLR+ Sbjct: 80 GHEGDGSWAVSAEVEGALGLATLGTGIEPPRGDVATTRRCRIDREPVGSAAAFGDHLRMV 139 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182 WL PSMD +F G + ERRRF DR+V AID H R+ +R +R RNRLL + DS W Sbjct: 140 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDIRNADSHW 199 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 +IE + AEL + + R + L+++I FP ++ L G+++ + Sbjct: 200 LDAIERETAELAIAVAAQRGQTATKLAAMIDARGATSAFPSARIMLDGWMESALASEPAT 259 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +++ Y L D R D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ L Sbjct: 260 VVEDRYRAVLRDNRSRDAAAGRTLDGPHLTDLEVIYAPKAMPAREASTGEQKALLIGLVL 319 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA+L++ TT P+LLLDE+ AHLD +R ALF ++ +G+Q++MTG D F + Sbjct: 320 AHAQLVAETTSITPLLLLDEVVAHLDPGRRAALFGELSRLGAQVWMTGADPLAFAEIGPA 379 Query: 362 AKFMRISN 369 A + N Sbjct: 380 AAIFDVDN 387 >gi|163797312|ref|ZP_02191265.1| recombination protein F [alpha proteobacterium BAL199] gi|159177403|gb|EDP61959.1| recombination protein F [alpha proteobacterium BAL199] Length = 410 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 220/377 (58%), Gaps = 13/377 (3%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + +R+ ++ L ++ FRNYA+ L D + G NG GKTN+LEA+SFL+PGRG RRA Sbjct: 21 VPHRLAVRRLTLTRFRNYAAESLDIDGPAVVLTGPNGAGKTNLLEAVSFLTPGRGLRRAR 80 Query: 61 YADVTRI-------GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 ++V R+ S + ++ ARV+G G +I + D R ++++ R Sbjct: 81 LSEVDRLVPADTIDTSSTAWAVAARVDGKLGAVNIGTGRDPDSDGERRLVRVDGAPARSQ 140 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 L H+ +SWL P+MDR+F + RRRFLDRMVFA DP H R+ +E R RNRL+ Sbjct: 141 STLGDHVTVSWLTPAMDRLFLDGASGRRRFLDRMVFAFDPEHSTRVNHYEHAWRERNRLI 200 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 +G D +W +++E +A G+ + AR ++ L+ + E + FP +L+L G +D Sbjct: 201 KDGVRDPAWFAALEETLAATGIAVAAARSSLVARLNQVCAET--EPPFPAAELTLDGTVD 258 Query: 234 GKFDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 D++ +++ L GR+ S GPHRSDL+V + K + STGEQ Sbjct: 259 RWLDEAPALEIEDRLRATLAAGRRPGSPEAE---GPHRSDLLVRHVPKNMPAERCSTGEQ 315 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 K +LVGI LAHARL + G +PILLLDE++AHLD+ +R ALF V +G Q ++TGTD+ Sbjct: 316 KALLVGIVLAHARLQAIEEGASPILLLDEVAAHLDDRRRTALFEAVLALGGQAWLTGTDR 375 Query: 353 SVFDSLNETAKFMRISN 369 VF + + A+ + +++ Sbjct: 376 GVFAPIADRAQIVEVTD 392 >gi|209883687|ref|YP_002287544.1| DNA replication and repair protein RecF [Oligotropha carboxidovorans OM5] gi|209871883|gb|ACI91679.1| DNA replication and repair protein RecF [Oligotropha carboxidovorans OM5] Length = 382 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 138/357 (38%), Positives = 204/357 (57%), Gaps = 7/357 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L+++EFR+Y + + + + VG NG GKTN LEAIS L+PGRG RRA + D+ Sbjct: 5 RILRLSLTEFRSYHAASVRPQSDLVVLVGPNGAGKTNCLEAISLLAPGRGLRRARFEDIA 64 Query: 66 -RIG--SPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKH 119 R G ++ A VEG GLA + ++ + R +I+ + +H Sbjct: 65 NRAGDDGDGSWAVSAEVEGALGLATLGTGIDAPSAEGGNAKRRARIDREAVSSASAFGEH 124 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 LR+ WL P+MD +F+G + ERRRF DR+V AID H R+ ER +R RNRLL + FD Sbjct: 125 LRMVWLTPAMDGLFTGPASERRRFFDRLVLAIDKDHSSRVSALERSLRSRNRLLEDRNFD 184 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQ 238 WC +IE + AEL V + R + L+ ++ FP +++L G+++ + Sbjct: 185 PHWCEAIERETAELAVAVAAQRGHTLRRLAGMLAARGATSVFPSARITLDGWMENALMSE 244 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 A+++ Y L R +D+ + RTL GPH +DL V Y K + STGEQK +L+G Sbjct: 245 PATAVEDRYRDILRKSRLLDAAAGRTLNGPHLTDLHVIYAPKNMPAKEASTGEQKALLIG 304 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + LAHA L++ TG P+LLLDE+ AHLD +R ALF + +G Q++MTG D + F Sbjct: 305 LILAHASLVAEMTGIVPLLLLDEVVAHLDPRRRAALFDELATLGGQVWMTGADPAAF 361 >gi|170748658|ref|YP_001754918.1| DNA replication and repair protein RecF [Methylobacterium radiotolerans JCM 2831] gi|170655180|gb|ACB24235.1| DNA replication and repair protein RecF [Methylobacterium radiotolerans JCM 2831] Length = 384 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 145/370 (39%), Positives = 205/370 (55%), Gaps = 8/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L +FRN+A L L A+ VG+NG GKTN+LEA+S PGRG RRA +A + Sbjct: 16 LRVTRLIARDFRNHADLELTPRARFVALVGENGAGKTNLLEALSLFVPGRGLRRAEFAAM 75 Query: 65 TRIGSPSFFS---TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R G P F+ T R EG E ++ D R+ R +I+ ++ LR Sbjct: 76 ARSGGPGGFAVSLTLDR-EGAEHRLGTGLEPPGPDGRASRLCRIDGATAASPVAFSEFLR 134 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + WL P +D +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E D Sbjct: 135 VVWLTPDLDGLFRGAAGDRRRFLDRLVLAVDAAHGARVSAMERALRSRNRLLEERPDDDR 194 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSF 240 W ++E ++AELGV + +AR E L LI E + FP + L G LD + Sbjct: 195 WLDAVEREVAELGVAVALARRETAERLDRLIAETRDDAQPFPWAAIRLEGDLD-DLVAVW 253 Query: 241 CALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 A++ E Y L +GR D + RTLIGP SDL+V + K + STGEQK +L+G Sbjct: 254 PAIEAEDRYRMALRNGRNRDRAAGRTLIGPQSSDLVVRHGPKDVPAGTASTGEQKALLIG 313 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LAHARL+ +G AP++LLDE++AHLD +R LF + + Q++MTG D F Sbjct: 314 LVLAHARLVRAMSGIAPLILLDEVAAHLDPRRRAGLFEALEALPGQVWMTGADPGAFAQA 373 Query: 359 NETAKFMRIS 368 + +RI Sbjct: 374 GTRTEVLRIG 383 >gi|332559821|ref|ZP_08414143.1| recombination protein F [Rhodobacter sphaeroides WS8N] gi|332277533|gb|EGJ22848.1| recombination protein F [Rhodobacter sphaeroides WS8N] Length = 363 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 208/369 (56%), Gaps = 17/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + R+ FD + FVG NG GKTN+LEAIS LSPGRG RRA+ ++ Sbjct: 4 LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A V G+ + +I E R VR +V+ L + LRI W Sbjct: 64 ARRPEALGWKVAAAVTGLHSVHEIETWAEGGGARQVRI--DGKAATQVM--LGRLLRIVW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR+++ + RRRFLDR+ + P H ++D+E+ MR RNRLL E D+ W Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E +MAE I R E + L + + + FP LS+ D Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAVLSVAS------DD-----P 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ A +GR+ D + RTL+GPHR+DL Y K + A STGEQK +L+ + LA+A Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G AP+LLLDE++AHLDE +R ALF + +G+Q FMTGT +F +L + A+ Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 346 Query: 365 MRISNHQAL 373 + ++ Q L Sbjct: 347 IEVTEAQGL 355 >gi|240136786|ref|YP_002961253.1| putative RecF protein [Methylobacterium extorquens AM1] gi|240006750|gb|ACS37976.1| putative RecF protein [Methylobacterium extorquens AM1] Length = 385 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 145/363 (39%), Positives = 201/363 (55%), Gaps = 6/363 (1%) Query: 14 EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73 +FRN+ L L + VG+NG GKTNILEA+S PGRG RRA A + R+G P F Sbjct: 17 DFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRADLATMARVGGPGGF 76 Query: 74 STFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + A +E E E D R R +I+ ++ LRI WL P D Sbjct: 77 AVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSEFLRIVWLTPDFDG 136 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191 +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E D W ++E ++A Sbjct: 137 LFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPDDGRWLDAVEREVA 196 Query: 192 ELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEE--YA 248 ELGV + +AR E + L LI E FP L L G LD + AL+ E + Sbjct: 197 ELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLD-DLVAVWPALEAEDRFR 255 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + L GR D + RTLIGP +DL+V + K + A STGEQK +L+G+ LAHARL+ Sbjct: 256 RALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALLIGLVLAHARLVR 315 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 +G AP++LLDE++AHLD +R LF + + Q++MTG D ++F L A + I+ Sbjct: 316 AMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFAELEGRADMVNIA 375 Query: 369 NHQ 371 + + Sbjct: 376 DGR 378 >gi|218528086|ref|YP_002418902.1| DNA replication and repair protein RecF [Methylobacterium chloromethanicum CM4] gi|218520389|gb|ACK80974.1| DNA replication and repair protein RecF [Methylobacterium chloromethanicum CM4] Length = 385 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 145/363 (39%), Positives = 201/363 (55%), Gaps = 6/363 (1%) Query: 14 EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73 +FRN+ L L + VG+NG GKTNILEA+S PGRG RRA A + R+G P F Sbjct: 17 DFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRADLATMARVGGPGGF 76 Query: 74 STFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + A +E E E D R R +I+ ++ LRI WL P D Sbjct: 77 AVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSEFLRIVWLTPDFDG 136 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191 +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E D W ++E ++A Sbjct: 137 LFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPDDGRWLDAVEREVA 196 Query: 192 ELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEE--YA 248 ELGV + +AR E + L LI E FP L L G LD + AL+ E + Sbjct: 197 ELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLD-DLVAVWPALEAEDRFR 255 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + L GR D + RTLIGP +DL+V + K + A STGEQK +L+G+ LAHARL+ Sbjct: 256 RALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALLIGLVLAHARLVR 315 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 +G AP++LLDE++AHLD +R LF + + Q++MTG D ++F L A + I+ Sbjct: 316 AMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFAELEGRADMVNIA 375 Query: 369 NHQ 371 + + Sbjct: 376 DGR 378 >gi|163849460|ref|YP_001637503.1| DNA replication and repair protein RecF [Methylobacterium extorquens PA1] gi|254558656|ref|YP_003065751.1| RecF protein [Methylobacterium extorquens DM4] gi|163661065|gb|ABY28432.1| DNA replication and repair protein RecF [Methylobacterium extorquens PA1] gi|254265934|emb|CAX21683.1| putative RecF protein [Methylobacterium extorquens DM4] Length = 384 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 201/363 (55%), Gaps = 6/363 (1%) Query: 14 EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73 +FRN+ L L + VG+NG GKTNILEA+S PGRG RRA A + R+G P F Sbjct: 17 DFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRADLATMARVGGPGGF 76 Query: 74 STFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + A +E E E D R R +I+ ++ LRI WL P D Sbjct: 77 AVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSEFLRIVWLTPDFDG 136 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191 +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E D W ++E ++A Sbjct: 137 LFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPDDGRWLDAVEREVA 196 Query: 192 ELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEE--YA 248 ELGV + +AR E + L LI E FP L L G LD + AL+ E + Sbjct: 197 ELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLD-DLVAVWPALEAEDRFR 255 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + L GR D + RTLIGP +DL+V + K + A STGEQK +L+G+ LAHARL+ Sbjct: 256 RALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALLIGLVLAHARLVR 315 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 +G AP++LLDE++AHLD +R LF + + Q++MTG D ++F L A + ++ Sbjct: 316 AMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFAELEGRADLIGVA 375 Query: 369 NHQ 371 + + Sbjct: 376 DGR 378 >gi|85713966|ref|ZP_01044955.1| recombination protein F [Nitrobacter sp. Nb-311A] gi|85699092|gb|EAQ36960.1| recombination protein F [Nitrobacter sp. Nb-311A] Length = 381 Score = 258 bits (660), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 206/355 (58%), Gaps = 6/355 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L++S+FRNY+S L + + G NG GKTN LEAIS LSPGRG RRA+ D+ Sbjct: 5 RILRLSLSQFRNYSSAALKTRSNMVVLAGPNGAGKTNCLEAISLLSPGRGLRRATRDDIA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV----RCLQINDVVIRVVDELNKHLR 121 ++ A V+G GLA + ++ ++ + RC +I+ + HLR Sbjct: 65 DNRGDGSWAVSAEVQGPLGLATLGTGIDAPNNETAPGGRRC-RIDREPVASAAAFGDHLR 123 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + WL PSMD +F+G + +RRRFLDR+V AID H R+ ER +R RNRLL D Sbjct: 124 MVWLTPSMDGLFTGPASDRRRFLDRLVLAIDSDHSGRVSALERSLRSRNRLLEMRNHDDL 183 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSF 240 WC ++E + AEL V + R + I LS + +FP ++ L G+++ K + Sbjct: 184 WCDAVERETAELAVAVAAMRAQTITRLSVALEARGSTSSFPSARIGLDGWMENKLLTEPA 243 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A+++ Y + L R D+ + RTL GPH +D V Y K + STGEQK +L+G+ Sbjct: 244 TAVEDRYREILRASRARDAAAGRTLEGPHLTDFEVIYAPKDMPAKEASTGEQKALLIGLV 303 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 LAHARL++ TG P+LLLDE+ AHLD +R+ALF + +G+Q++M+G D + F Sbjct: 304 LAHARLVAEMTGIIPLLLLDEVVAHLDPHRRDALFSELAGLGAQVWMSGADPAAF 358 >gi|221640843|ref|YP_002527105.1| recombination protein F [Rhodobacter sphaeroides KD131] gi|221161624|gb|ACM02604.1| DNA replication and repair protein recF [Rhodobacter sphaeroides KD131] Length = 363 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 206/369 (55%), Gaps = 17/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + R+ FD + FVG NG GKTN+LEAIS LSPGRG RRA+ ++ Sbjct: 4 LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A V G+ +I E R VR +V+ L + LRI W Sbjct: 64 ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRV--DGKAATQVM--LGRLLRIVW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR+++ + RRRFLDR+ + P H ++D+E+ MR RNRLL E D+ W Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E +MAE I R E + L + + + FP LS+ D Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAMLSVAS------DD-----P 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ +GR+ D + RTL+GPHR+DL Y K + A STGEQK +L+ + LA+A Sbjct: 227 EDLGAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G AP+LLLDE++AHLDE +R ALF + +G+Q FMTGT +F +L + A+ Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 346 Query: 365 MRISNHQAL 373 + ++ Q L Sbjct: 347 IEVTEAQGL 355 >gi|188579290|ref|YP_001922735.1| DNA replication and repair protein RecF [Methylobacterium populi BJ001] gi|179342788|gb|ACB78200.1| DNA replication and repair protein RecF [Methylobacterium populi BJ001] Length = 385 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 144/374 (38%), Positives = 204/374 (54%), Gaps = 6/374 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + ++ L +FRN+ L L + VG+NG GKTNILEA+S PGRG RRA Sbjct: 4 LPGGTRLTRLIARDFRNHIDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRAD 63 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNK 118 A + R+G P F+ A +E E + E D R R +I+ ++ Sbjct: 64 LATMARVGGPGGFAVSATLETAEAEHRLGSGYEPPGYDGRGTRVCRIDGAPAPSPVAFSE 123 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 LRI WL P D +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E Sbjct: 124 FLRIVWLTPDFDGLFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPD 183 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD 237 D W ++E ++AELGV + +AR E + L LI E FP + L G LD Sbjct: 184 DGRWLDAVEREVAELGVAVALARRETVERLDRLIAETRDDAAPFPWASIRLEGDLD-DLV 242 Query: 238 QSFCALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + AL+ E + + L GR D + RTLIGP +DL+V + K + A STGEQK + Sbjct: 243 AVWPALEAEDRFRRALMQGRHRDRAAGRTLIGPQTTDLLVRHGPKDVPAATASTGEQKAL 302 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+G+ LAHARL+ +G P++LLDE++AHLD +R LF + + Q++MTG D ++F Sbjct: 303 LIGLVLAHARLVRAMSGLTPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALF 362 Query: 356 DSLNETAKFMRISN 369 L A + I++ Sbjct: 363 TELQGRADMVNIAD 376 >gi|126460791|ref|YP_001041905.1| recombination protein F [Rhodobacter sphaeroides ATCC 17029] gi|126102455|gb|ABN75133.1| DNA replication and repair protein RecF [Rhodobacter sphaeroides ATCC 17029] Length = 363 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 206/369 (55%), Gaps = 17/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + R+ FD + FVG NG GKTN+LEAIS LSPGRG RRA+ ++ Sbjct: 4 LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A V G+ +I E R VR +V+ L + LRI W Sbjct: 64 ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRI--DGKAATQVM--LGRLLRIVW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR+++ + RRRFLDR+ + P H ++D+E+ MR RNRLL E D+ W Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E +MAE I R E + L + + + FP LS+ D Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAVLSVAS------DD-----P 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ A +GR+ D + RTL+GPHR+DL Y K + A STGEQK +L+ + LA+A Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G AP+LLLDE++AHLDE +R ALF + +G+Q FMTGT +F +L A+ Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGYRAQR 346 Query: 365 MRISNHQAL 373 + ++ Q L Sbjct: 347 IEVTEAQGL 355 >gi|77464922|ref|YP_354426.1| recombination protein F [Rhodobacter sphaeroides 2.4.1] gi|77389340|gb|ABA80525.1| RecF protein [Rhodobacter sphaeroides 2.4.1] Length = 368 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 206/370 (55%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + R+ FD + FVG NG GKTN+LEAIS LSPGRG RRA+ ++ Sbjct: 9 LAVTSLALSHFRSHRAARMGFDGRPVAFVGSNGAGKTNLLEAISLLSPGRGLRRAAADEI 68 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A V G+ +I E R VR +V+ L + LRI W Sbjct: 69 ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRV--DGKAATQVM--LGRLLRIVW 124 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR+++ + RRRFLDR+ + P H ++D+E+ MR RNRLL E D+ W Sbjct: 125 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 184 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E +MAE I R E + L + + + FP LS+ D Sbjct: 185 ALEGRMAEAARAIRAHRDEAVARL--MAAQGAAETAFPRAMLSVAS------DD-----P 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ +GR+ D + RTL+GPHR+DL Y K + A STGEQK +L+ + LA+A Sbjct: 232 EDLGAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G AP+LLLDE++AHLDE +R ALF + +G+Q FMTGT +F +L + A+ Sbjct: 292 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 351 Query: 365 MRISNHQALC 374 + ++ Q L Sbjct: 352 IEVTEAQGLS 361 >gi|209966327|ref|YP_002299242.1| recombination protein F [Rhodospirillum centenum SW] gi|209959793|gb|ACJ00430.1| DNA replication and repair protein RecF, putative [Rhodospirillum centenum SW] Length = 377 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 206/371 (55%), Gaps = 12/371 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG- 68 L ++ FR+Y + RL DA+ + G NG GKTN+LEA+SFL+PGRG RRA A++ R G Sbjct: 4 LTVTRFRSYLTARLDCDARPVVLTGPNGAGKTNLLEAVSFLAPGRGLRRARLAEIERTGP 63 Query: 69 ----SPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRI 122 + ++ A +E G +I + + R +QI+ + L +H+ + Sbjct: 64 AEGWAGPGWAVAATLETPAGPVEIGTGRDPAAGPESERRLVQIDGRAAKGQIALARHVAV 123 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P MDR+F + RRRFLDR+VF DP H R+ +E +R R RLL EG D +W Sbjct: 124 VWLTPQMDRLFLEAASGRRRFLDRLVFGFDPAHAGRLSQYEAALRERARLLREGPADPAW 183 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 +++E +MA LGV + AR +M+ L++ V FP +++ G +D + A Sbjct: 184 LTTLEDRMATLGVAVAAARADMVARLAAAAALGVGP--FPAPGMAMAGGVD-DLVAAGPA 240 Query: 243 LKEEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L E A + + IGPHRSDL V K + GSTGEQK +L+ I Sbjct: 241 LAAEDALRRTLRDSRRRDAEAGGAAIGPHRSDLCVTCRAKEMPAERGSTGEQKALLIAIV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA+ARL+ TG AP+LLLDE++AHLD D+R ALF + GSQ +MTGTD VF L Sbjct: 301 LANARLMKAETGTAPLLLLDEVAAHLDADRRAALFAEILATGSQAWMTGTDAQVFAELGA 360 Query: 361 TAKFMRISNHQ 371 A +R+ + + Sbjct: 361 AASHVRVEDSR 371 >gi|220920057|ref|YP_002495358.1| DNA replication and repair protein RecF [Methylobacterium nodulans ORS 2060] gi|219944663|gb|ACL55055.1| DNA replication and repair protein RecF [Methylobacterium nodulans ORS 2060] Length = 382 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 205/370 (55%), Gaps = 7/370 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +FRN+ASL L VG+NG GKTNILEA+S +PGRG RRA +A + Sbjct: 8 RVTRLIARDFRNHASLDLGVSRPFVALVGENGAGKTNILEALSLFAPGRGLRRADFAAMA 67 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G P F+ + G G + E TR++R+ R +I+ +HLR+ Sbjct: 68 REGGPGGFAVSLNLAGPHGEHRVGTAWEPPQTREERAGRLCRIDGASAPSPTAFAEHLRV 127 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P +D +F G + ERRRFLDR+V A+D H R+ ER +R RNRLL E D+ W Sbjct: 128 VWLTPDLDALFRGPAGERRRFLDRLVLAVDAGHGARVSALERALRSRNRLLEERPDDTPW 187 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKFDQSFC 241 ++E ++AEL + + +AR E + L LI+ + FP + L G +D + Sbjct: 188 LDAVEREVAELAIAVALARRETVERLDRLILASRDEASPFPWAGVRLEGEID-DLVAVWP 246 Query: 242 ALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 A+ E + L R D + RTL GP SDL+V + K + STGEQK +L+G+ Sbjct: 247 AVDAEDRFRAMLRQNRFRDRAAGRTLAGPQASDLLVRHGPKDVPAGTASTGEQKALLIGL 306 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHARL++ +G P++LLDE++AHLD +R LF + + Q++MTG D ++F L Sbjct: 307 VLAHARLVAGMSGLPPLVLLDEVAAHLDPRRRAGLFDALEALPGQVWMTGADPALFAELG 366 Query: 360 ETAKFMRISN 369 + +++ Sbjct: 367 NRGDLIAVAD 376 >gi|170738370|ref|YP_001767025.1| DNA replication and repair protein RecF [Methylobacterium sp. 4-46] gi|168192644|gb|ACA14591.1| DNA replication and repair protein RecF [Methylobacterium sp. 4-46] Length = 382 Score = 255 bits (652), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 203/372 (54%), Gaps = 7/372 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +FRN+ASL L VG+NG GKTNILEA+S +PGRG RRA +A + Sbjct: 8 RVTRLIARDFRNHASLDLGVGRPFVALVGENGAGKTNILEALSLFAPGRGLRRADFAAMA 67 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G P F+ VEG G + E R++R R +I+ + LR+ Sbjct: 68 REGGPGGFAVSLSVEGPHGEHRVGTAWEPPQGREERGGRQCRIDGASAPSPTAFAEQLRV 127 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P +D +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E D W Sbjct: 128 VWLTPDLDALFRGPAGDRRRFLDRLVLAVDAGHGSRVSALERALRSRNRLLEERPEDGPW 187 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFC 241 +IE ++AEL + + +AR E + L LI+ + FP + L G +D + Sbjct: 188 LDAIEREVAELAIAVALARRETVERLDRLILATRDAASPFPWAGVRLEGDID-DLVAVWP 246 Query: 242 ALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 A+ E + L R D + RTL GP SDL+V + K + STGEQK +L+G+ Sbjct: 247 AVDAEDRFRATLRQNRFRDRAAGRTLAGPQASDLVVRHGPKDVPAGTASTGEQKALLIGL 306 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHARL++ +G AP++LLDE++AHLD +R LF + + Q++MTG D ++F L Sbjct: 307 VLAHARLVAGMSGLAPLVLLDEVAAHLDPRRRAGLFDALEALPGQVWMTGADPALFAELG 366 Query: 360 ETAKFMRISNHQ 371 + ++ Q Sbjct: 367 SRGDVVAVAEGQ 378 >gi|92115636|ref|YP_575365.1| recombination protein F [Nitrobacter hamburgensis X14] gi|91798530|gb|ABE60905.1| DNA replication and repair protein RecF [Nitrobacter hamburgensis X14] Length = 379 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 143/376 (38%), Positives = 210/376 (55%), Gaps = 11/376 (2%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I+ L+++ FRNY + L + + VG NG GKTN LEAIS LSPGRG RRA+ +V Sbjct: 5 RIRRLSLTHFRNYRAAALETRSDVVVLVGPNGAGKTNCLEAISLLSPGRGLRRATREEVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV----RCLQINDVVIRVVDELNKHLR 121 ++ A VEG GLA + ++ + RC +I+ HLR Sbjct: 65 DHRGDGSWAVSAEVEGALGLATLGTGIDAPGSDAASSGRRC-RIDREPAGSAAAFGDHLR 123 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + WL PSMD +F G + ERRRF DR+V AID H R+ ER +R RNRLL D Sbjct: 124 MVWLTPSMDGLFGGAASERRRFFDRLVLAIDSDHSGRVSALERSLRSRNRLLETRNSDDH 183 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSF 240 WC ++E Q AEL V + R + + L++ + FP ++ L G+++ + Sbjct: 184 WCDAVERQTAELAVAVAAMRAQTVTRLAAALEARGAASAFPSARIGLDGWMENALLTEPA 243 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A+++ Y + L R D+ + RTL GPH +DL V Y K++ STGEQK +L+G+ Sbjct: 244 TAVEDRYREILRANRARDAAAGRTLDGPHLTDLEVIYAPKSMPARDASTGEQKALLIGLV 303 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHA L++ TG AP+LLLDE+ AHLD D+R ALF + +G+Q++M+G D + F ++ Sbjct: 304 LAHAGLVAEMTGIAPLLLLDEVVAHLDPDRRGALFGELKGLGAQVWMSGADPAAFANVGA 363 Query: 361 TAKFM-----RISNHQ 371 ++ RI+ Q Sbjct: 364 GSEIFDVDAGRIAQRQ 379 >gi|163733264|ref|ZP_02140708.1| recombination protein F [Roseobacter litoralis Och 149] gi|161393799|gb|EDQ18124.1| recombination protein F [Roseobacter litoralis Och 149] Length = 366 Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 213/364 (58%), Gaps = 13/364 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L IS FR++ RL+ DA+ G NG GKTN+LEA+S LSPGRG RRAS D+ Sbjct: 3 LHLTELMISHFRSHRVARLMVDARPVALFGPNGAGKTNVLEAVSLLSPGRGLRRASAQDM 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123 TR + A+V + S ++ET ++ + R ++IN L + R+ Sbjct: 63 TRRPEALGWKVSAQVTSL----GQSQEIETWSEEGAARQVKINSKTA-AQTALGRVSRVL 117 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL+PSMDR++ + RRRFLDRM + +P H + +E+ MR RNRLL + SW Sbjct: 118 WLIPSMDRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAMRERNRLLKNMVREPSWY 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++E QMA+ GV I+ R + L++ ++ FP +L L + + L Sbjct: 178 QALEVQMAQAGVVIDQNRRMALRQLAAAQLDATTA--FPAAELELI-HNEAPLPEGESTL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ +A D R D + RTLIGPHR+DLI Y K + STGEQK +LV + LA+ Sbjct: 235 RDAFA----DSRSRDLAAGRTLIGPHRADLIGTYRAKGVAAKDCSTGEQKALLVSLILAN 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 AR ++ +G AP+LLLDE++AHLD D+R AL+ +T +G+Q +MTGT+KS+FD+L + A+ Sbjct: 291 ARALAQESGAAPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTEKSLFDTLGDDAQ 350 Query: 364 FMRI 367 + I Sbjct: 351 YFEI 354 >gi|217979344|ref|YP_002363491.1| DNA replication and repair protein RecF [Methylocella silvestris BL2] gi|217504720|gb|ACK52129.1| DNA replication and repair protein RecF [Methylocella silvestris BL2] Length = 398 Score = 251 bits (642), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 143/372 (38%), Positives = 219/372 (58%), Gaps = 8/372 (2%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R ++ L +++FR+YASL + AQ + GDNG GKTN+LEA+S L+PGRG RRA +D Sbjct: 20 RRGVRRLTLADFRSYASLDMEILAQTVVLTGDNGAGKTNVLEALSLLTPGRGLRRAELSD 79 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRI 122 R F+ ++ G + +E ++ R +I+ + H+R+ Sbjct: 80 CARNFGGGGFAVSIEIDAEGGRLQLGTGVEPNGGAALARKFRIDREPAPSIRAFCDHIRV 139 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS- 181 WL P+MD +F G +RRRFLDR+V ++D H R+ ER +R RNRLL E + Sbjct: 140 VWLTPAMDGLFVGSPGDRRRFLDRLVLSLDADHGARVNALERALRSRNRLLEERGAGNER 199 Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238 W ++E ++AEL + + AR E ++ L++LI + + FP +LSL G +D + + Sbjct: 200 LWLDAVEREVAELAIAVAAARFETVSKLAALIAQAGPETEGGFPLAELSLDGDID-RLIE 258 Query: 239 SFCALK--EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + AL+ +EY K L D R D+ + RTLIGP SDL V + K +H STGEQK +L Sbjct: 259 TRPALEAEDEYRKILRDNRGRDAAAGRTLIGPQSSDLAVRHARKQAAASHSSTGEQKALL 318 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 VG+ LA ARLI +G AP++LLDEI+AH D +R AL+ ++ +G+Q+++TG D S F Sbjct: 319 VGLILAQARLIKAMSGLAPLVLLDEIAAHFDPKRRAALYELLGALGAQVWLTGADPSAFA 378 Query: 357 SLNETAKFMRIS 368 L A+ ++++ Sbjct: 379 ELEGKAQMLQVT 390 >gi|146276062|ref|YP_001166221.1| recombination protein F [Rhodobacter sphaeroides ATCC 17025] gi|145554303|gb|ABP68916.1| DNA replication and repair protein RecF [Rhodobacter sphaeroides ATCC 17025] Length = 363 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 204/369 (55%), Gaps = 17/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + R+ FD + FVG NG GKTN+LEAIS LSPGRG RRA+ ++ Sbjct: 4 LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNVLEAISLLSPGRGLRRAAADEI 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A V G+ ++ E R VR +V+ L + LRI W Sbjct: 64 ARRPEALGWKVAAAVRGLHSDHEVETWAEGGGARQVRI--DGKAATQVM--LGRLLRIVW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR+++ + RRRFLDR+ + P H ++D+E+ MR RNRLL E D+ W + Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPDHAEAVLDYEKAMRERNRLLKEQVADAHWHA 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E +MAE I R + L + + + FP LS+ Sbjct: 180 ALEGRMAEAARVIRAHREAAVARL--MAAQGAAETAFPRAMLSVA-----------SEDP 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ A +GR+ D + RTL+GPHR+DL Y K + A STGEQK +L+ + LA+ Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLLGPHRADLTAIYAAKGVPAAQCSTGEQKALLISLVLANG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G APILLLDE++AHLDE +R ALF + +G+Q +MTGT +F +L A+ Sbjct: 287 RALAEDLGAAPILLLDEVAAHLDEGRRAALFDEICALGAQAYMTGTGPELFTALGGRAQR 346 Query: 365 MRISNHQAL 373 + ++ + L Sbjct: 347 IEVTEAEGL 355 >gi|304319869|ref|YP_003853512.1| recombination protein F [Parvularcula bermudensis HTCC2503] gi|303298772|gb|ADM08371.1| recombination protein F [Parvularcula bermudensis HTCC2503] Length = 375 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/356 (40%), Positives = 204/356 (57%), Gaps = 5/356 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +S FR+Y S F+ + T F G NG GKTNILEA+S + PGRG RRA+ D+T Sbjct: 7 RVTRLALSSFRSYRSAEWRFEKRQTAFYGPNGAGKTNILEALSLMGPGRGLRRAALGDLT 66 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R GS + + EG ++++ E + R +Q++ +R L +R WL Sbjct: 67 RQGSDGGWGIGVDLGTGEGRRRLALRAEGVPLK--RHVQVDGEPVRSTGTLLDSVRFQWL 124 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P+ DR+F+ ERRRFLDRMV A P H R + FE +R R L G+ + Sbjct: 125 TPAQDRLFTDSPGERRRFLDRMVLARCPSHGRDTLTFENALRQRQAALEAGW-PPAILEP 183 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCALK 244 +EAQMAE G+ I+ AR + + AL + E VQ+ FP LSL+G F D + A + Sbjct: 184 LEAQMAEAGIAIDEARRQTLAALQ-VNYERVQETAFPRAGLSLSGPFEDIAGIPTLAARR 242 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E YA L GR+ D + RTL+GPHRSDL V + K STGEQK +L+G+ LAHA Sbjct: 243 ESYADLLERGRRRDREAGRTLLGPHRSDLEVVHLGKDQPARLCSTGEQKALLIGLVLAHA 302 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 T +LLLDE++AHLDED+R AL ++ + +FMTGTD+++FD+ + Sbjct: 303 TASLAATQAPLVLLLDEVAAHLDEDRRAALAAMLDQLAICVFMTGTDRALFDAWGD 358 >gi|255262668|ref|ZP_05342010.1| DNA replication and repair protein RecF [Thalassiobium sp. R2A62] gi|255105003|gb|EET47677.1| DNA replication and repair protein RecF [Thalassiobium sp. R2A62] Length = 368 Score = 245 bits (626), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 210/371 (56%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L IS FR++ + L DA+ G NGVGKTN++EAIS LSPGRG RR+S D+ Sbjct: 4 LRLSELTISHFRSHKRVALEIDARPVAIYGANGVGKTNLIEAISLLSPGRGLRRSSAEDI 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + A + + L +I E R V+ D L + R+ W Sbjct: 64 TRRPEAVGWKVRAVLHSLNQLHEIETWSEGGSARQVKV----DSKASTQVALGRIGRLLW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MDR++ + RRRFLDR + +P H ++ +++ MR RNRLL + D W Sbjct: 120 LIPAMDRLWIEGAEGRRRFLDRATLSFEPTHAEAVLTYDKAMRERNRLLKDQVRDGHWYV 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +IEAQMAE G++I R I+ L + + + FP L L L+G D+ A Sbjct: 180 AIEAQMAEAGLRITQNRAFAISEL--MAAQASARTAFPTAVLQL---LEG--DEGLPASV 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +++ L + R+ D + RTLIGPHR+DL Y K I STGEQK +L+ + LA+ Sbjct: 233 DDHRTALSENRQRDLYAGRTLIGPHRTDLGATYAAKDIPAKDCSTGEQKALLISLILANG 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ + G P+LLLDE++AHLD D+R AL+ +T +G+Q +MTGT +FD+L + A++ Sbjct: 293 RALAQSFGAPPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTGPELFDTLGDRAQY 352 Query: 365 MRISNHQALCI 375 + +S A + Sbjct: 353 LDVSEDCAALV 363 >gi|110677618|ref|YP_680625.1| recombination protein F [Roseobacter denitrificans OCh 114] gi|109453734|gb|ABG29939.1| DNA replication and repair protein RecF, putative [Roseobacter denitrificans OCh 114] Length = 366 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 140/360 (38%), Positives = 203/360 (56%), Gaps = 11/360 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S FR++ R D + G NG GKTNILEA+S LSPGRG RRAS D+TR Sbjct: 8 LMVSHFRSHRVARFALDQRPVALFGPNGAGKTNILEAVSLLSPGRGLRRASAQDMTRRPE 67 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + A+V + ++ + R VR IN L + R+ WL+PSM Sbjct: 68 ALGWKITAQVMSLGQHQEVETWSQEGAARQVR---INGKTA-AQTALGRVSRVLWLIPSM 123 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 DR++ + RRRFLDRM + +P H + +E+ MR RNRLL + SW ++E Q Sbjct: 124 DRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAMRERNRLLKNMVREPSWYQALELQ 183 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA+ GV ++ R + L++ + FP +L L D AL++ +A Sbjct: 184 MAQAGVVVDQNRRMALRQLAAAQSDATTA--FPAAELELI-HNDAPLPDGETALRDAFA- 239 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 D R D + RTL+GPHR+DLI Y K + STGEQK +LV + LA+AR ++ Sbjct: 240 ---DSRSRDLAAGRTLVGPHRADLIGTYRAKGVAARDCSTGEQKALLVSLILANARALAQ 296 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 +G AP+LLLDE++AHLD D+R AL+ +T +G+Q +MTGT+KS+FD+L + A++ I+ Sbjct: 297 DSGAAPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTEKSLFDTLGDGAQYFEITE 356 >gi|114769642|ref|ZP_01447252.1| recombination protein F [alpha proteobacterium HTCC2255] gi|114549347|gb|EAU52229.1| recombination protein F [alpha proteobacterium HTCC2255] Length = 364 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 210/370 (56%), Gaps = 20/370 (5%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +RI + L IS FR+Y ++ ++ G NG GKTNILEA+S LSPGRG RR+ Sbjct: 2 SRIAVTNLKISHFRSYKNVEILTSGCPVALFGSNGAGKTNILEALSLLSPGRGLRRSRVD 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ R + A ++ + + +I RSVR D + L + RI Sbjct: 62 EMERKPEGIGWKISATLQSLGQIHEIETIYSGDGSRSVRI----DGKVTTQTALGRIARI 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WLVP MDR++ + RRRFLDR+ + +P H + +D+ER MR RN++L EG D +W Sbjct: 118 VWLVPVMDRLWVDGAEGRRRFLDRLSMSFEPSHAQYTLDYERAMRERNKMLKEGINDPAW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240 S++E+QMAE G KI R+ I+ IME + +FP +L L G +++ Sbjct: 178 YSAVESQMAESGRKIEQNRLYTIDR----IMEAQTNVQTSFPTAQLGLVG----ANNEAI 229 Query: 241 CA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 LK+ +A + R+ D + RTLIGPHR DL Y K STGEQK +LV Sbjct: 230 IVDDLKDAFA----NNRRADLFAGRTLIGPHRDDLTAMYSAKETAAKLCSTGEQKALLVS 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA+ R +S G APILLLDE+SAHLD +++NAL+ + +G+Q +MTGT K +F++ Sbjct: 286 LILANGRALSQDFGSAPILLLDEVSAHLDIERQNALYEEIISLGAQAWMTGTGKELFEAF 345 Query: 359 NETAKFMRIS 368 + A+F+ ++ Sbjct: 346 GDRAQFLEVN 355 >gi|260431696|ref|ZP_05785667.1| recombination protein F [Silicibacter lacuscaerulensis ITI-1157] gi|260415524|gb|EEX08783.1| recombination protein F [Silicibacter lacuscaerulensis ITI-1157] Length = 366 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 207/368 (56%), Gaps = 21/368 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ R+ D + G NG GKTNILEA+S SPGRG RRAS A++ Sbjct: 3 LALTELTVSHFRSHKLARMALDGRPVALYGPNGAGKTNILEAVSLFSPGRGMRRASAAEM 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADIS---IKLET-RDDRSVRCLQINDVVIRVVDELNKHL 120 TR P + GL D+ ++ET + + R ++I+ +D L K Sbjct: 63 TR--RPEALGW-----KLSGLLDVQGRRSEIETWSEGGAARQVRIDGKAASQID-LGKLA 114 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL+P+MDR++ + RRRFLDR+ + DP H + +E+ MR RNRLL E D+ Sbjct: 115 RVVWLMPAMDRLWIEGAEGRRRFLDRVTLSFDPSHAEAALTYEKAMRERNRLLKEQVRDA 174 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQS 239 W +++EAQMAE G +I+ AR +NAL+ L Q E FP +L L +G S Sbjct: 175 HWYAALEAQMAETGHRIHTAR---MNALAQLRAAQEQAETAFPSAELELVQP-EGAMPDS 230 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E A+ F D + RTL+GPHRSDL + K + + STGEQK +LV + Sbjct: 231 AQDLLEALAESRF----RDLSAGRTLVGPHRSDLYGVFAAKGVAASECSTGEQKALLVSL 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L++AR ++ G PILLLDE++AHLD D+R AL+ + +G+Q +MT T +F L Sbjct: 287 ILSNARALAAQVGAPPILLLDEVAAHLDADRRAALYDEICALGAQAWMTATGPELFAELG 346 Query: 360 ETAKFMRI 367 E A+ + Sbjct: 347 ERAQAFEV 354 >gi|297184290|gb|ADI20407.1| recombinational DNA repair ATPase (recf pathway) [uncultured alpha proteobacterium EB080_L43F08] Length = 364 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 210/370 (56%), Gaps = 20/370 (5%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +RI + L IS FR+Y ++ ++ G NG GKTNILEA+S LSPGRG RR+ Sbjct: 2 SRIAVTNLKISHFRSYKNVEILTSGCPVALFGSNGAGKTNILEALSLLSPGRGLRRSRVD 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ R + A ++ + + +I RSVR D + L + RI Sbjct: 62 EMERKPEGIGWKISATLQSLGQIHEIETIYSGDGSRSVRI----DGKVTTQTALGRIARI 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WLVP MDR++ + RRRFLDR+ + +P H + +D+ER MR RN++L EG D +W Sbjct: 118 VWLVPVMDRLWVDGAEGRRRFLDRLSMSFEPSHAQYTLDYERAMRERNKMLKEGINDPAW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240 S++E+QMAE G KI R+ I+ IME + +FP +L L G +++ Sbjct: 178 YSAVESQMAESGRKIEQNRLYTIDR----IMEAQTNVQTSFPTAQLGLVG----ANNEAI 229 Query: 241 CA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 LK+ +A + R+ D + RTL+GPHR DL Y K STGEQK +LV Sbjct: 230 IVDDLKDAFA----NNRRADLFAGRTLVGPHRDDLTAMYSAKETAAKLCSTGEQKALLVS 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA+ R +S G APILLLDE+SAHLD +++NAL+ + +G+Q +MTGT K +F++ Sbjct: 286 LILANGRALSQDFGSAPILLLDEVSAHLDIERQNALYEEIISLGAQAWMTGTGKELFEAF 345 Query: 359 NETAKFMRIS 368 + A+F+ ++ Sbjct: 346 GDRAQFLEVN 355 >gi|149186139|ref|ZP_01864453.1| recombinational DNA repair ATPase [Erythrobacter sp. SD-21] gi|148830170|gb|EDL48607.1| recombinational DNA repair ATPase [Erythrobacter sp. SD-21] Length = 359 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 214/364 (58%), Gaps = 19/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ FRN+ + L A+ + VG+NG GKTN+LEA+S L+PGRG RRA+ AD+ + G Sbjct: 5 ISLTRFRNHEATELGATARFNLLVGENGAGKTNVLEALSLLAPGRGLRRANLADIVQHGV 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVVIRVVDELNKHLRISWLV 126 F A + EG ++L T + S R ++IN L + + ++WL Sbjct: 65 DEGFGVGASLLVDEGE---PVRLATYSESAQPSRRRVRINGADASAA-ALGEWIALTWLT 120 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P+MD +F+G + +RRRF+DRM A+DP H + +E +R RNRLL++ +S+W + Sbjct: 121 PAMDGLFTGPAADRRRFIDRMALALDPAHAQHAARYEGALRERNRLLSDDRPPESAWLDA 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 IEAQM E G ++ R +++ L + I K P + +LT + G D + E Sbjct: 181 IEAQMVEHGGRLIAGRAALVDTLMARIAHMPSK---PFARPALT-YAPGGADSA-----E 231 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ LF+GR+ D ++RTL GPHR +L V + K + A STGEQK +LV I LAHA Sbjct: 232 ALSQALFEGRQRDRAAQRTLAGPHRDELEVIHASKRVPAAQSSTGEQKAMLVAITLAHAG 291 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L + G A ILLLDE++AHLD +R ALF + G+Q++MTGT+ + FDS+ + A Sbjct: 292 LAAQ--GRAGILLLDEVAAHLDPVRRAALFDQLAASGAQVWMTGTEIAPFDSIADQAAVW 349 Query: 366 RISN 369 +++ Sbjct: 350 KVAG 353 >gi|260574427|ref|ZP_05842431.1| DNA replication and repair protein RecF [Rhodobacter sp. SW2] gi|259023323|gb|EEW26615.1| DNA replication and repair protein RecF [Rhodobacter sp. SW2] Length = 366 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 137/366 (37%), Positives = 202/366 (55%), Gaps = 14/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L++S FR++ + RL FD + VG NG GKTN+LEA+S LSPGRG RRA ++ Sbjct: 4 LAITSLSLSHFRSHRAARLHFDGRPVALVGPNGAGKTNVLEAVSLLSPGRGLRRAGVDEI 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A + G+ ++ E R VR D L + R+ W Sbjct: 64 ARRPEAMGWKVGADLRGIGAAHEVETWAEAGQARQVRI----DGKHATQAMLGRIARMLW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR++ + RRRFLDRM + P H ++ +E+ MR RNRLL + D+ W Sbjct: 120 LVPAMDRLWIEAAEGRRRFLDRMTLSFAPDHAEAVLAYEKAMRDRNRLLKDQVTDAHWYG 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCAL 243 +EAQMA G I R A++ L+ V E FP L++ +G ++ AL Sbjct: 180 VLEAQMAASGAAIMAHRR---LAVARLLAAQVGAETAFPQADLAIVA--EGDLPETTDAL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + +A +GR+ D + RTLIGPHR+DL + K + STGEQK +L+ + LA+ Sbjct: 235 AQAFA----EGRRRDLAAGRTLIGPHRADLAARFAAKDVAADQCSTGEQKALLISLILAN 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 AR ++ G APILLLDE++AHLD D+R AL+ + +G+Q MTGT +FD+L + Sbjct: 291 ARALAADLGVAPILLLDEVAAHLDADRRAALYDEICALGAQALMTGTGAELFDTLGARGQ 350 Query: 364 FMRISN 369 +++ Sbjct: 351 TFAVAD 356 >gi|83309737|ref|YP_420001.1| recombination protein F [Magnetospirillum magneticum AMB-1] gi|82944578|dbj|BAE49442.1| Recombinational DNA repair ATPase [Magnetospirillum magneticum AMB-1] Length = 394 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/375 (37%), Positives = 205/375 (54%), Gaps = 14/375 (3%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R ++ L +++FR Y +LRL D++ + G NG GKTNILEA+SFL PGRG RRA AD Sbjct: 14 RPAVRRLTLADFRCYRTLRLETDSRPVVLTGANGAGKTNILEALSFLVPGRGLRRAGAAD 73 Query: 64 VTRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 +TR G + S ++ A ++G G +I E +R R ++I+ + D L + Sbjct: 74 ITRHGLAAGSPWAVAATLDGPAGRVEIGTGREAGHER--RSVRIDGKPAKPGD-LAGLVS 130 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---- 177 WL P+MDR+F + RRRFLDR+VF + P H +E MR R RLL Sbjct: 131 ALWLTPAMDRLFIEGASGRRRFLDRLVFGLVPGHGAEAGAYEHAMRERTRLLRAARDGGP 190 Query: 178 -FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 D +W +++E MA G ++ +ARVE I L + FP L++ G ++G Sbjct: 191 RVDPAWMAALEEGMARHGTRVALARVESIRRLDEACRAGLGP--FPAAGLAVEGEIEGWL 248 Query: 237 DQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 +E + L R D + +GPHRSDL+V + K + STGEQK Sbjct: 249 AGGLSPDEAEERFRGALRVARARDEAAGAATMGPHRSDLMVRHVPKDLPAGQCSTGEQKA 308 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 VLV I LA R+ + G AP+LLLDE++AHLDE +R ALF + + +Q +MTGTD + Sbjct: 309 VLVSIVLAQGRVQDQSGGRAPLLLLDEVAAHLDEVRRAALFDELCALKAQSWMTGTDAML 368 Query: 355 FDSLNETAKFMRISN 369 F E A+F R+++ Sbjct: 369 FAGFGERAQFFRVTD 383 >gi|298290589|ref|YP_003692528.1| DNA replication and repair protein RecF [Starkeya novella DSM 506] gi|296927100|gb|ADH87909.1| DNA replication and repair protein RecF [Starkeya novella DSM 506] Length = 385 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 205/369 (55%), Gaps = 9/369 (2%) Query: 14 EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS---- 69 +FR+Y + + VG NG GKTN+LEAIS L+PGRG RRAS G Sbjct: 13 DFRSYHHADIRAGDGPVVLVGPNGAGKTNLLEAISLLAPGRGLRRASLDQFAARGPEGTQ 72 Query: 70 PSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 + ++ A VEG G + LE + RS RC +I+ + H+R+ WL P Sbjct: 73 AAGWAVSAVVEGAYGEVTLGTGLEADAGEARSRRC-RIDGEPVGSAAAFADHVRVVWLTP 131 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 MD +F+G ERRRFLDR+V A+D H R+ ER +R RNRLL E D + ++E Sbjct: 132 DMDGLFTGPPSERRRFLDRLVLAVDAEHGARVNALERALRSRNRLLEEPSTDPRYLDAVE 191 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFD-QSFCALKE 245 ++A L V + AR+E + L++ I + + FP ++L G ++ + +++ Sbjct: 192 HELAALAVAVAAARLETVRRLAANIAQSRDDTSLFPWASVALEGEVERALAREPATVVED 251 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 +Y L R D + RTL GPH +DL+V + KAI A GSTGEQK +L+G+ LAHAR Sbjct: 252 QYRLALRASRPRDRAAGRTLEGPHLTDLLVGHGPKAIPAAQGSTGEQKALLIGLALAHAR 311 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ G AP++LLD++ A+LD +R ALF + +GSQ++MTG D S F +L A+ Sbjct: 312 LVGEMAGMAPVMLLDDVVAYLDPARRAALFEALEALGSQVWMTGADPSAFVALGARAERF 371 Query: 366 RISNHQALC 374 + Q L Sbjct: 372 EVRPGQVLS 380 >gi|254477354|ref|ZP_05090740.1| DNA replication and repair protein RecF [Ruegeria sp. R11] gi|214031597|gb|EEB72432.1| DNA replication and repair protein RecF [Ruegeria sp. R11] Length = 365 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 136/365 (37%), Positives = 206/365 (56%), Gaps = 11/365 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L D + G NG GKTNILEA+S SPGRG RRAS AD+ Sbjct: 2 LALTALTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P R E G ++ + ++ R ++I++ +D L + R+ W Sbjct: 62 AR--RPEELGWKLRAELRAGRQTYEVETWSEAGKA-RQVKIDNKSASQID-LGEICRVVW 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MDR++ + RRRFLDR+V + DP H + +E+ MR RNRLL E D++W Sbjct: 118 LIPAMDRLWIEGAEGRRRFLDRIVLSFDPGHAEATLAYEKAMRERNRLLKEQVRDAAWYR 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +E+QMA+ G +I+ AR ++ L + + + FP +L L DG + L+ Sbjct: 178 VLESQMAQAGHRIHAARTAAVDRLR--LAQEAAETAFPAAELELIQS-DGGLPDNAADLQ 234 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E +A +GR D + RTL+GPHR+DL+ Y K + STGEQK +LV + LA+A Sbjct: 235 ESFA----EGRFRDLAAGRTLLGPHRTDLLGTYAAKGLPARDCSTGEQKALLVSLILANA 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R + G APILLLDE+SAHLD ++R AL++ + +G+Q +MTGT F + A+ Sbjct: 291 RALIAAGGAAPILLLDEVSAHLDVNRRAALYQEILGLGAQAWMTGTGPEQFAEFDGQAQM 350 Query: 365 MRISN 369 + + + Sbjct: 351 LCVQD 355 >gi|86139415|ref|ZP_01057984.1| recombination protein F [Roseobacter sp. MED193] gi|85823918|gb|EAQ44124.1| recombination protein F [Roseobacter sp. MED193] Length = 365 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 138/371 (37%), Positives = 208/371 (56%), Gaps = 15/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L D + G NG GKTNILEA+S SPGRG RRAS AD+ Sbjct: 2 LALTELTLSHFRSHLRAELHLDGRPVAIHGKNGAGKTNILEAVSLFSPGRGLRRASAADM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R P +++ + D + ++ET ++ + R ++I++ + L + R+ Sbjct: 62 VR--RPEGLGW--KLKAVLQAPDQAYEIETWSEEGAARQVRIDNKASNQI-ALGQICRVV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WLVP MDR++ + RRRFLDR+ + DP H + +E+ MR RNRLL E D++W Sbjct: 117 WLVPVMDRLWVEAAEGRRRFLDRIALSFDPSHAEATLTYEKAMRERNRLLKEQVRDAAWY 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCA 242 +EAQM G +I+ AR +A+ LI + E FP L L +G+ QS Sbjct: 177 RVVEAQMGTAGHRIHTARC---SAVQRLIEAQDKAETAFPTAHLDLVQS-EGEMPQS--- 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + + L +GR D R+L+GPHRSDLI Y K I STGEQK +LV + LA Sbjct: 230 -EADLVQALAEGRMRDMKVGRSLVGPHRSDLIGTYVHKGIAAKECSTGEQKALLVSLILA 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +AR ++ + G PILLLDE++AHLD +R AL+ + +G+Q +MTGT +F L A Sbjct: 289 NARALTASEGAPPILLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGAELFAELGTRA 348 Query: 363 KFMRISNHQAL 373 + + + + + + Sbjct: 349 QVLEVGDMEGI 359 >gi|163743746|ref|ZP_02151120.1| recombination protein F [Phaeobacter gallaeciensis 2.10] gi|161383007|gb|EDQ07402.1| recombination protein F [Phaeobacter gallaeciensis 2.10] Length = 365 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 138/366 (37%), Positives = 205/366 (56%), Gaps = 13/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L D + G NG GKTNILEA+S SPGRG RRAS AD+ Sbjct: 2 LALTTLTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123 R P +++G +A S ++ET + R ++I++ +D L + R+ Sbjct: 62 AR--RPEALGW--KLKGQLTVARQSYEVETWSEAGKARQVKIDNKAASQID-LGQICRVV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL+P+MDR++ + RRRFLDR+V + DP H + +E+ MR RNRLL E D+ W Sbjct: 117 WLIPAMDRLWIEAAEGRRRFLDRIVLSFDPGHAEATLLYEKAMRERNRLLKEQIRDAGWY 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QMAE G +I+ AR ++ L + + + FP +L L DG + L Sbjct: 177 RVLETQMAESGHRIHAARTAAVDRLR--MAQEAAETAFPAAELELIQS-DGGLPDTAADL 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + +GR D + RTL+GPHR+DL+ Y K + STGEQK +LV + LA+ Sbjct: 234 QEAFE----EGRFRDLAAGRTLLGPHRTDLLGTYAAKGVPARDCSTGEQKALLVSLILAN 289 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 AR + G PILLLDE+SAHLD +R AL++ + +G+Q +MTGT +FD A+ Sbjct: 290 ARALIAEGGAPPILLLDEVSAHLDVIRRAALYQEIVTLGAQAWMTGTGPELFDEFEGRAQ 349 Query: 364 FMRISN 369 + + Sbjct: 350 MFTVED 355 >gi|163738136|ref|ZP_02145552.1| DNA replication and repair protein RecF [Phaeobacter gallaeciensis BS107] gi|161388752|gb|EDQ13105.1| DNA replication and repair protein RecF [Phaeobacter gallaeciensis BS107] Length = 365 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 138/366 (37%), Positives = 205/366 (56%), Gaps = 13/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L D + G NG GKTNILEA+S SPGRG RRAS AD+ Sbjct: 2 LALTTLTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123 R P +++G A S ++ET + R ++I++ +D L + R+ Sbjct: 62 AR--RPEALGW--KLKGQLTAARQSYEVETWSEAGKARQVKIDNKAASQID-LGQICRVV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL+P+MDR++ + RRRFLDR+V + DP H + +E+ MR RNRLL E D++W Sbjct: 117 WLIPAMDRLWIEAAEGRRRFLDRIVLSFDPGHAEATLLYEKAMRERNRLLKEQIRDAAWY 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QMAE G +I+ AR ++ L + + + FP +L L DG + L Sbjct: 177 RVLETQMAESGHRIHAARTAAVDRLR--MAQEAAETAFPAAELELIQS-DGGLPDTAADL 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + +GR D + RTL+GPHR+DL+ Y K + STGEQK +LV + LA+ Sbjct: 234 QEAFE----EGRFRDLAAGRTLLGPHRTDLLGTYAAKGVPARDCSTGEQKALLVSLILAN 289 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 AR + G PILLLDE+SAHLD +R AL++ + +G+Q +MTGT +FD A+ Sbjct: 290 ARALIAEGGAPPILLLDEVSAHLDVIRRAALYQEIVTLGAQAWMTGTGPELFDEFEGRAQ 349 Query: 364 FMRISN 369 + + Sbjct: 350 MFTVED 355 >gi|259418051|ref|ZP_05741970.1| recombination protein F [Silicibacter sp. TrichCH4B] gi|259346957|gb|EEW58771.1| recombination protein F [Silicibacter sp. TrichCH4B] Length = 365 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 139/374 (37%), Positives = 212/374 (56%), Gaps = 19/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L DA+ G+NG GKTNILEA+S SPGRG RRAS AD+ Sbjct: 2 LALTSLFMSHFRSHLRADLHLDARPVAIHGNNGAGKTNILEAVSLFSPGRGIRRASAADM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 R P +++G+ + ++ET + + R ++I++ V L + R+ Sbjct: 62 AR--RPEALGW--KLKGLLQTTGPTFEVETSSEGGNARQVKIDNKAASQV-ALGRIARVV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL+P+MDR++ + RRRFLDR+ + DP H + +E+ MR RNRLL + D++W Sbjct: 117 WLIPAMDRLWIEGAEGRRRFLDRIALSFDPDHAEATLAYEKAMRERNRLLKDNVRDAAWY 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSF 240 +E QMAE G +I+ RV+ ++ L++ QKE FP +L L +G+ +S Sbjct: 177 RVLEGQMAEAGFRIHQTRVDAVSRLTA-----AQKEAETAFPVAELQLIQA-EGEMPESV 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+ L GR D RTL+GPHRSDL+ Y K + STGEQK +LV + Sbjct: 231 DDLR----AALDAGRARDLAVGRTLVGPHRSDLMGAYAAKGLPAKDCSTGEQKALLVSLI 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA+AR + G APILLLDE++AHLD ++R AL+ + +G+Q +MTGT +F L + Sbjct: 287 LANARALQAEEGSAPILLLDEVAAHLDGNRRAALYDEICALGTQAWMTGTGPELFQELGD 346 Query: 361 TAKFMRISNHQALC 374 A+ + + + + Sbjct: 347 RAQHLEVVDQNGVS 360 >gi|126738625|ref|ZP_01754330.1| recombination protein F [Roseobacter sp. SK209-2-6] gi|126720424|gb|EBA17130.1| recombination protein F [Roseobacter sp. SK209-2-6] Length = 375 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/361 (37%), Positives = 203/361 (56%), Gaps = 13/361 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S FR++ + D + G NG GKTNILEA+S SPGRG RRAS A++TR Sbjct: 17 LTLSHFRSHLRAEMHLDGRPVALFGANGAGKTNILEAVSLFSPGRGIRRASAAEMTR--R 74 Query: 70 PSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 P +++G+ + ++ET D+ + R ++I+ + L + R+ WLVP Sbjct: 75 PEGLGW--KLKGVLQTSAQPYEIETWSDEGAARQVRIDGKPANQI-ALGQICRVVWLVPV 131 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 MDR++ + RRRFLDR+ + DP H + +E+ MR RN+LL E D W +EA Sbjct: 132 MDRLWVEAAEGRRRFLDRIALSFDPAHAEASLTYEKSMRERNKLLKEQVRDPVWYRVLEA 191 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 QMA G +I++AR I L L + + FP +L L +G+ QS + E+ Sbjct: 192 QMAASGHRIHMARTHAIEKL--LDAQRKAETAFPVAELQLLQS-EGEMPQS----EAEFV 244 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L + R D RTLIGPHRSDL+ Y K + STGEQK +LV + LA+AR + Sbjct: 245 DALAENRSRDLSVGRTLIGPHRSDLLGHYAAKGVAAKDCSTGEQKALLVSLILANARALM 304 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 TG P++LLDE++AHLD ++R AL+ + +G+Q +MTGT +F L + A+ + +S Sbjct: 305 QETGAPPLVLLDEVAAHLDANRRQALYDEICALGAQAWMTGTGSELFAELKDRAQMLEVS 364 Query: 369 N 369 Sbjct: 365 E 365 >gi|89069839|ref|ZP_01157174.1| recombination protein F [Oceanicola granulosus HTCC2516] gi|89044640|gb|EAR50756.1| recombination protein F [Oceanicola granulosus HTCC2516] Length = 366 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 139/365 (38%), Positives = 202/365 (55%), Gaps = 11/365 (3%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I L +S FR++ + DA+ G NG GKTN+LEA+S LSPGRG RRA A Sbjct: 2 SRLAITRLTLSHFRSHKRAAVEVDARPVAIYGANGAGKTNLLEAVSILSPGRGLRRAGAA 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++TR + A V + +I E R VR D L + +R+ Sbjct: 62 EMTRRPETVGWKVTAEVAAPDRPHEIETWSEASAARQVRI----DGKAAAQVALGRVVRV 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL+PSMDR++ + RRRFLDR V + D H + +E+ MR RNRLL + D SW Sbjct: 118 LWLIPSMDRLWIEGADGRRRFLDRAVLSFDADHAAETLAYEKAMRERNRLLKDEVRDPSW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++EAQMA G +I+ RVE++ AL+ + + FP L+L +G+ A Sbjct: 178 YGALEAQMARAGARIHAGRVEVLAALAE--AQEGAETAFPVATLALEQS-EGELPGDEAA 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L+E +A GR D + RTL GPHR+DL Y K + STGEQK +L+ + LA Sbjct: 235 LRETFAA----GRGRDMAAGRTLAGPHRTDLAATYAAKDVPARDCSTGEQKALLISLILA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +AR ++ TG P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F L + A Sbjct: 291 NARALAARTGMPPLLLLDEVAAHLDAARRAALYEEIVALGAQAWMTGTGPELFAELGDRA 350 Query: 363 KFMRI 367 + + + Sbjct: 351 QRLEV 355 >gi|126730158|ref|ZP_01745970.1| recombination protein F [Sagittula stellata E-37] gi|126709538|gb|EBA08592.1| recombination protein F [Sagittula stellata E-37] Length = 364 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 205/363 (56%), Gaps = 11/363 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +S FR++ + + D + G NG GKTN++EA+S SPGRG RRAS D+ R Sbjct: 3 LSHLTLSHFRSHKRVAIDVDLRPVAIWGPNGSGKTNLIEAVSLFSPGRGLRRASAQDMAR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +EG +G +I+ E R+VR I+D V L + R WL+ Sbjct: 63 RPESLGWKITGALEGPQGAHEIAFTSEGGGARAVR---IDDKPASQV-ALGRIARAVWLI 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P+MDR++ + RRRFLDR+ + P H + +D+E+ MR RNRLL + D W +++ Sbjct: 119 PAMDRLWIEGAEGRRRFLDRIALSFFPDHAQAALDYEKAMRERNRLLKDMVRDPHWYTAL 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E QMAE G +++ R+ ++ ++ + + FP L L DG+ S L+ Sbjct: 179 ERQMAEAGAALHVNRLAALDRIAE--AQDGAETRFPAATLDLV-HGDGEMPGSAAELR-- 233 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 L + RK D + RTL+GPHR+DLI + +K + A STGEQK +L+ + L++AR Sbjct: 234 --IALEESRKRDLAAGRTLVGPHRADLIGTFAEKGVLAADCSTGEQKALLISLILSNARA 291 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 ++ G PILLLDE++AHLD +R ALF + +G+Q +MTGT +F L + A+ + Sbjct: 292 LAADEGHPPILLLDEVAAHLDAGRRAALFDEICALGAQAWMTGTGPELFAELGDRAQALE 351 Query: 367 ISN 369 +S+ Sbjct: 352 VSD 354 >gi|296447171|ref|ZP_06889102.1| DNA replication and repair protein RecF [Methylosinus trichosporium OB3b] gi|296255336|gb|EFH02432.1| DNA replication and repair protein RecF [Methylosinus trichosporium OB3b] Length = 382 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 211/381 (55%), Gaps = 32/381 (8%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +++ L +++FR+YA+L + + G+NG GKTNILEA+S SPGRG R A A+ Sbjct: 11 RVRRLRLADFRSYAALDIAILSPLVALTGENGAGKTNILEALSLFSPGRGLRGAEIAEC- 69 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDR----------------SVRCLQINDVV 109 AR +G G A +SI L++ DDR R +I+ V Sbjct: 70 -----------ARRQGAGGFA-VSIDLDS-DDRLMQLGHGFEIGAPGETPARRFRIDRVP 116 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + HLR WL P+MD +F+G + +RRRFLDR+ ++D H R ER +R R Sbjct: 117 VSSARAFADHLRPLWLTPAMDGLFAGSAGDRRRFLDRLTMSVDAEHGARAARLERALRNR 176 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSL 228 NRLL E DS W ++ E ++A L V + AR + + L +LI E FP +LS+ Sbjct: 177 NRLLAEEQADSRWLTAAEREIAALAVAVAAARRDTVERLRALIAAERDDASPFPFAELSI 236 Query: 229 TGFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 G L+ ++ +++ Y L R+ D+ + RTL GP SDL+V + K Sbjct: 237 DGELERLVGEEPALRVEDHYRSVLAAMRRRDAAAGRTLSGPQASDLLVRHGPKDEAARAC 296 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 STGEQK +L G+ LAHARL++ TTG AP+LLLDEI+AH D +R ALF + IG Q++M Sbjct: 297 STGEQKALLTGLVLAHARLVAATTGTAPLLLLDEIAAHFDALRREALFEALARIGGQVWM 356 Query: 348 TGTDKSVFDSLNETAKFMRIS 368 TG D VFDSL A +R++ Sbjct: 357 TGADPRVFDSLTGRADLLRVT 377 >gi|148555709|ref|YP_001263291.1| recombination protein F [Sphingomonas wittichii RW1] gi|259563672|sp|A5VA37|RECF_SPHWW RecName: Full=DNA replication and repair protein recF gi|148500899|gb|ABQ69153.1| DNA replication and repair protein RecF [Sphingomonas wittichii RW1] Length = 356 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 137/361 (37%), Positives = 203/361 (56%), Gaps = 22/361 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FR+YAS + + G+NG GKTNILEA+S L PGRG R A+ A++ Sbjct: 1 MTVARLMLTDFRSYASATIAAGPGFVVLTGENGAGKTNILEAVSMLGPGRGLRGAALAEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLR 121 R G F+ A L+D ++L T + R ++IN L + L Sbjct: 61 AREGGAGGFAVAAE------LSD-EVRLGTGTTPAAPERRQVRINGAPASAT-ALGEWLS 112 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDS 180 + WL P+MDR+F+ + RRRFLDR+V AI+P H R + ++ MR RN+LL EG D+ Sbjct: 113 LLWLTPAMDRLFTEGAEGRRRFLDRLVLAIEPGHARHVSRYDAAMRARNKLLAAEGPPDA 172 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W ++EAQ+ + G I AR + AL+ L + F L++ G++ + Sbjct: 173 AWLDALEAQLGQHGQAIAEARARTVTALA-LRIAAEPDAPFARAALAIEGWVPSR----- 226 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A++L GR D + RTL GPHR DL V + K A STGEQK +L+GI Sbjct: 227 ----RPLAEELRHGRARDVAAGRTLSGPHRQDLAVSHAAKQQPAARASTGEQKALLLGIV 282 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHA L++ G PILL+DE++AHLD +R ALF + G QI++TGT++++FD + E Sbjct: 283 LAHADLVAERRGRRPILLMDEVAAHLDPVRRAALFERLGRSGGQIWLTGTERALFDGIGE 342 Query: 361 T 361 Sbjct: 343 A 343 >gi|254511198|ref|ZP_05123265.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium KLH11] gi|221534909|gb|EEE37897.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium KLH11] Length = 365 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 208/371 (56%), Gaps = 23/371 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ RL D + G NG GKTNILEA+S SPGRG RRAS A++ Sbjct: 3 LALTELTVSHFRSHKLARLFLDGRPVALHGPNGAGKTNILEAVSLFSPGRGIRRASAAEM 62 Query: 65 TRIGSPSFF----STFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKH 119 TR P S R +G S ++ET + + R +++++ +D L + Sbjct: 63 TR--RPEALGWKLSGVLRAQGQ------SFEVETWSEGGAARQVRVDEKAASQID-LGRL 113 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 R+ WL+PSMDR++ + RRRFLDR+ + +P H + + +E+ MR RNRLL E D Sbjct: 114 TRVVWLIPSMDRLWIEGAEGRRRFLDRIALSFEPSHAQASLTYEKAMRERNRLLKEQVRD 173 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQ 238 + W +++E QMAE+G +I+ R + AL L Q E FP L L + + Sbjct: 174 AHWYAALEGQMAEMGHRIHSTR---LTALEHLRAAQDQAETAFPSADLELV-----QTEG 225 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E+ + L + R D + RTL+GPHRSDL + K + STGEQK +LV Sbjct: 226 AMPETAEDLHEALNESRFRDLAAGRTLVGPHRSDLYGVFAAKGVPAKDCSTGEQKALLVS 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + L++AR ++ G PI+LLDE++AHLD +R AL+ + +G+Q +MTGT +F L Sbjct: 286 LILSNARALAAMVGAPPIVLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFAEL 345 Query: 359 NETAKFMRISN 369 + A+ + +S+ Sbjct: 346 GDRAQTLIVSD 356 >gi|254295378|ref|YP_003061401.1| DNA replication and repair protein RecF [Hirschia baltica ATCC 49814] gi|254043909|gb|ACT60704.1| DNA replication and repair protein RecF [Hirschia baltica ATCC 49814] Length = 396 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 213/379 (56%), Gaps = 10/379 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + FRN+AS L DA+ G NG GKTN+LEA+S L PG+G R AS + Sbjct: 20 LTIQRLALHNFRNHASTVLEMDARPVCLFGANGAGKTNLLEAVSMLGPGKGLRAASLPSL 79 Query: 65 TRI-GSPSFFSTFARVEGMEGLA---DISIKLE-TRDDRSVRCLQINDVVIRVVDELNKH 119 R+ S +A M+ IS+ L+ + D R+ R +++D + + L + Sbjct: 80 VRVEAGESVVGGWAISARMDDAGLDRQISVGLDVSPDGRTRRVAKLDDAPVSQTN-LAEL 138 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 +R+ WL P+MDR+F+G + +RR+F DR V A P H +E+ MR RN L +G D Sbjct: 139 VRVVWLTPAMDRVFAGPAGDRRKFYDRQVLAHVPAHGSASAAYEKAMRERNALFEQGRMD 198 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238 +SW ++EA++AE G I + R + + + I + + +FP LS+ G + Q Sbjct: 199 ASWLDALEARLAEAGAAIAVNRATALKRIQAAI-DARPEGHFPKADLSIAGKFEAMALQG 257 Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S A++ + L GR DS++ RTL G HRSDL V + K + A STGEQK +L+ Sbjct: 258 DSQAAIEGAISDSLKVGRARDSVAGRTLAGVHRSDLQVVHRPKQLPAAQCSTGEQKALLM 317 Query: 298 GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 G+ LA+A+ L+ P+LLLDE +AHLD +R AL+ + +G Q ++TGTD ++FD Sbjct: 318 GMILANAKALLEGDFAPNPLLLLDEAAAHLDSVRRAALYDELAALGGQAWLTGTDAALFD 377 Query: 357 SLNETAKFMRISNHQALCI 375 + + A+ + N Q + + Sbjct: 378 AFGDRAQRFCVENGQVIKV 396 >gi|323137241|ref|ZP_08072320.1| DNA replication and repair protein RecF [Methylocystis sp. ATCC 49242] gi|322397599|gb|EFY00122.1| DNA replication and repair protein RecF [Methylocystis sp. ATCC 49242] Length = 391 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 136/366 (37%), Positives = 209/366 (57%), Gaps = 11/366 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +S+FR+YA R +A+ G+NG GKTN+LEA+S SPGRG RRA A+ R Sbjct: 26 VRRLTLSDFRSYAQARCDIEARLVALSGENGAGKTNVLEALSMFSPGRGLRRAELAECAR 85 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 F+ +E + ++ +L T D R +I+ I H+R+ Sbjct: 86 RDGAGGFAVSIEIE----IGGVTTQLGHGLTEDGE--RRFRIDRAPIGSARAFADHIRVL 139 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P+MD +F+G + ERRRFLDR+ +D H R+ ER +R RNRLL EG D W Sbjct: 140 WLTPAMDGLFAGPAGERRRFLDRLALGVDADHGARVNRLERALRNRNRLLEEGVSDRRWL 199 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-A 242 + E ++A +GV AR E ++ LS+LI + FP ++++ G ++ ++ A Sbjct: 200 DAAEQEIASIGVAAAAARRETVSRLSALIASGGESP-FPWAEIAIQGEIETMLAEAPALA 258 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ + + L R+ D+ + RTL GP SDL V + K STGEQK +L+G+ LA Sbjct: 259 VEDRFREMLAATRRRDAAAGRTLTGPQTSDLAVRHGPKNEAARDCSTGEQKALLMGLTLA 318 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HARL++ T AP+LLLDE++AH D +R ALF + +G Q++MTG D +F SL A Sbjct: 319 HARLVTAMTRKAPLLLLDEVAAHFDVKRREALFDELESLGGQVWMTGADPLLFASLQGRA 378 Query: 363 KFMRIS 368 + ++++ Sbjct: 379 EMLQVT 384 >gi|56695076|ref|YP_165423.1| recombination protein F [Ruegeria pomeroyi DSS-3] gi|56676813|gb|AAV93479.1| DNA replication and repair protein RecF [Ruegeria pomeroyi DSS-3] Length = 366 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 206/370 (55%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + IS FR++ LRL D + G NG GKTNILEA+S SPGRG RRAS A++ Sbjct: 3 LALTAITISHFRSHRLLRLSLDERPVAIHGPNGAGKTNILEAVSMFSPGRGMRRASAAEM 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR P E + G I+ + + + R ++I+D V L + +R+ W Sbjct: 63 TR--RPEVLGWKLSAELVAGHQRHEIETWS-EGGAARQVRIDDKAASQV-ALGRLVRMVW 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVPSMDR++ RRRFLDRM + +P H ++ +E+ MR RNRLL E D+ W Sbjct: 119 LVPSMDRLWIEGPEGRRRFLDRMTMSFEPDHAEAVLVYEKAMRERNRLLREQVRDAHWYL 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E QMA G +I+ AR + AL++ + +FP +L L +G +S L+ Sbjct: 179 ALETQMAAAGHRIHAARQSTLTALAAAQT--QAETSFPTAELELIQ-TEGALPESEGDLR 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E A+ F D + RTL+GPHRSDL Y K + + STGEQK +LV + LA+A Sbjct: 236 EALAESRF----RDLAAGRTLVGPHRSDLYGVYAAKGVPASDCSTGEQKALLVSLILANA 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G P+LLLDEI+AHLD +R AL+ + +G+Q +MTGT +F L A+ Sbjct: 292 RALARQVGAPPVLLLDEIAAHLDAGRRAALYDEICALGAQAWMTGTGPELFSELGARAQT 351 Query: 365 MRISNHQALC 374 + ALC Sbjct: 352 I------ALC 355 >gi|56552480|ref|YP_163319.1| recombination protein F [Zymomonas mobilis subsp. mobilis ZM4] gi|241762427|ref|ZP_04760505.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56544054|gb|AAV90208.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp. mobilis ZM4] gi|241373021|gb|EER62679.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 376 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 139/372 (37%), Positives = 208/372 (55%), Gaps = 18/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L++ +FR++ +RL +A I G+NGVGKTNILEAIS LSPGRGFR + D+ R Sbjct: 3 ISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDLVR 62 Query: 67 IGSPSFFSTFARVEGMEG---LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 F+ A++ +E + ++I + S R +++N V + L++ L I Sbjct: 63 REGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTTSA-NALSEWLAIL 121 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 WL P+MDR+F + RRRFLDR+ I P H R +E MR RN+LL+ E +D W Sbjct: 122 WLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGYDPLW 181 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGK----- 235 +E MAE I +AR ++++ LS E ++E+ F L+L +D + Sbjct: 182 LDGLEQIMAEQATHILLARRQLVDLLSE---EIAKQEDGLFAKADLALEEGVDSRDLVTH 238 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + L + +K R D+ RTL G HR+DL V + KA+ A STGEQK + Sbjct: 239 NSEEIMPLLQNIWQK---SRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGEQKAL 295 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+G+ LA LI+ G P+LLLDE++AHLD +R LF I+ G Q++MTGT+ S+F Sbjct: 296 LLGLVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLF 355 Query: 356 DSLNETAKFMRI 367 ++ E A + ++ Sbjct: 356 ETAGEAACYFQL 367 >gi|197106846|ref|YP_002132223.1| recombinational DNA repair ATPase [Phenylobacterium zucineum HLK1] gi|196480266|gb|ACG79794.1| recombinational DNA repair ATPase [Phenylobacterium zucineum HLK1] Length = 377 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 206/373 (55%), Gaps = 14/373 (3%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R + L++++FR+YAS L D + G NG GKTN+LEA+SFL PGRG R AS A+ Sbjct: 2 RTALTRLSLTDFRSYASAELALDGRPVWLAGPNGSGKTNLLEAVSFLIPGRGLRGASIAE 61 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE------LN 117 V R V A ++L T V + V+RV E L Sbjct: 62 VGRRLPGETVGRAWAVSATVAAAGDEVRLGT----GVEQPGASRRVVRVDGEPAPPGRLA 117 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 +H+R WL P+ DR+F + ERRRFLDR+VFA +P H + +E+ MR R RLLTEG Sbjct: 118 EHMRQVWLTPAQDRLFLEGAGERRRFLDRLVFAAEPGHAAHVQAYEKAMRERMRLLTEGP 177 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GK 235 D +W ++EA++AE G + +R + AL++ I ++ FP +LSLTG + Sbjct: 178 ADPTWLDALEARLAEAGALMADSRSRTLAALAAEIGARGER-PFPQARLSLTGAWEQMAA 236 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 ++ A+ L + R D+ + R L GPHR DL V + +K A STGEQK + Sbjct: 237 EGAGIADVEARLARALREARDRDAAAGRALTGPHRGDLAVVHAEKDRAAAECSTGEQKAL 296 Query: 296 LVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 ++ + LA A ++ + AP+LLLDE++AHLD +R ALF + +G Q F+TGTD+ + Sbjct: 297 ILNLVLAQAARLARADSAPAPVLLLDEVAAHLDRVRRAALFDEIEALGLQAFLTGTDEHL 356 Query: 355 FDSLNETAKFMRI 367 F++L + R+ Sbjct: 357 FEALAGRGQGWRM 369 >gi|310816809|ref|YP_003964773.1| recombination protein F [Ketogulonicigenium vulgare Y25] gi|308755544|gb|ADO43473.1| recombination protein F [Ketogulonicigenium vulgare Y25] Length = 370 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 197/368 (53%), Gaps = 12/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L FD + FVG NG GKTN++EAIS LSPGRG RRA D+ Sbjct: 4 LALNALKLSHFRSHKRAELAFDGRPVAFVGSNGAGKTNLIEAISLLSPGRGLRRAVTEDL 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A + + ++ + R+VR I+D V L + I W Sbjct: 64 ARRPESVGWKVQASLTRLHESHEVETAAAPGESRTVR---IDDKPAPQV-ALAAIMPIVW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR++ + RRRFLDRMV + P H +++E+ MR RNRLL +G D+ W + Sbjct: 120 LVPAMDRLWIEAAEGRRRFLDRMVMSFAPDHAALALEYEKAMRQRNRLLKDGVRDAHWYA 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +IE MA+ G ++ R+ +I L + FP L+LT D++ Sbjct: 180 AIERIMAKSGAEMTRNRLALIERLRD--AQASADTAFPAADLTLTSEGPSPVDEA----- 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R D ++ R+L+GPHR+DL + K + A STGEQK +L+ + LA+ Sbjct: 233 -ALADALEGSRPRDLLAGRSLVGPHRADLSAIWQAKGMIAADCSTGEQKALLISLVLANG 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G APILLLDE+SAHLD +R AL+ +T + Q FMTGT+ +F L A+ Sbjct: 292 RALAEDRGVAPILLLDEVSAHLDAARRAALYDEITAMAGQTFMTGTEVQLFAGLGPRAQG 351 Query: 365 MRISNHQA 372 + A Sbjct: 352 FAVEEGPA 359 >gi|149202935|ref|ZP_01879906.1| recombination protein F [Roseovarius sp. TM1035] gi|149143481|gb|EDM31517.1| recombination protein F [Roseovarius sp. TM1035] Length = 369 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 136/361 (37%), Positives = 203/361 (56%), Gaps = 13/361 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S FR++ S RL+ DA+ G NG GKTN++EAIS LSPGRG RRA+ D+ R Sbjct: 9 LTLSHFRSHKSGRLLLDARPVAIHGPNGAGKTNLIEAISLLSPGRGLRRAAAQDMARRPE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + A + + + ++ E R VR D L + R+ WLVP+M Sbjct: 69 ALGWKITAILNSLHQVHEVETFAEGTAARQVRI----DSKTATQLALGRIARLLWLVPAM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 DR++ + RRRFLDRM + P H + +++ MR RNRLL + D+ W ++E Q Sbjct: 125 DRLWIEGADGRRRFLDRMTMSFIPAHAEVTLAYDKAMRERNRLLKDQVRDAQWYLALERQ 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCALKEEYA 248 MA+ G +I+ R +AL+ ++ +Q E FP +L LT +G+ S L++ A Sbjct: 185 MADAGAEIHANRQ---HALALIMGAQMQAETAFPTAELELTQT-EGEMPDSADDLRQALA 240 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + F D M+ RTLIGPHR+DL Y K + A STGEQK +LV + LA+AR ++ Sbjct: 241 ESRF----RDLMAGRTLIGPHRADLYGVYAAKGVPAADCSTGEQKALLVSLILANARALA 296 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 G P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F L A+ + ++ Sbjct: 297 RDFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFSELGNRAQHIHVT 356 Query: 369 N 369 + Sbjct: 357 D 357 >gi|99079844|ref|YP_611998.1| recombination protein F [Ruegeria sp. TM1040] gi|99036124|gb|ABF62736.1| DNA replication and repair protein RecF [Ruegeria sp. TM1040] Length = 357 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 138/359 (38%), Positives = 205/359 (57%), Gaps = 13/359 (3%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 +S FR++ L D + G+NG GKTNILEA+S SPGRG RRAS AD+ R P Sbjct: 1 MSHFRSHLRADLHLDTRPVAIHGNNGAGKTNILEAVSLFSPGRGLRRASAADMAR--QPE 58 Query: 72 FFSTFARVEGMEGLADISIKLETRDD-RSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130 ++ G+ + + ++ET + + R ++I++ V L + R+ WLVP+MD Sbjct: 59 ALGW--KLRGVLQSSGQAYEVETSSEVGNARQVKIDNKSASQV-ALGRIARVVWLVPAMD 115 Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190 R++ + RRRFLDR+ + DP H + +E+ MR RNRLL + D++W +E QM Sbjct: 116 RLWIEGAEGRRRFLDRIALSFDPDHAEASLSYEKAMRERNRLLKDNVRDAAWYRVLEGQM 175 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 AE G +I+ AR++ + L++ + + FP +L L +G S AL+E Sbjct: 176 AETGFRIHQARMDAVARLTA--AQAEAETAFPVAQLQLV-QAEGDMPASAEALRE----M 228 Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 L GR D RTL+GPHRSDLI + K + STGEQK +LV + LA+AR + Sbjct: 229 LDAGRMRDLTVGRTLVGPHRSDLIGTFLAKGLPAKDCSTGEQKALLVSLILANARALQAQ 288 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 G APILLLDE++AHLD +R AL+ + +G+Q +MTGT +F L A+ + +S+ Sbjct: 289 EGAAPILLLDEVAAHLDAGRRAALYDEICALGTQAWMTGTGPELFQELGSRAQHLTVSD 347 >gi|83855144|ref|ZP_00948674.1| recombination protein F [Sulfitobacter sp. NAS-14.1] gi|83842987|gb|EAP82154.1| recombination protein F [Sulfitobacter sp. NAS-14.1] Length = 365 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 139/361 (38%), Positives = 199/361 (55%), Gaps = 16/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S FR++ + DA+ G NG GKTNILEA+S LSPGRG RR+S +D+TR Sbjct: 9 LTLSHFRSHKRAVIHCDARPVSIFGPNGAGKTNILEAVSLLSPGRGLRRSSASDMTRRPE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + A + + + ++ I E R VR D L + R+ WL+PSM Sbjct: 69 ALGWKITAHLHSLGQIHEVEIWSEAGAARQVRI----DGKATAQTGLGRIARVLWLIPSM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 DR++ + RRRFLDRM + P H + + +E+ MR RNRLL + + SW ++E Q Sbjct: 125 DRLWIEGAEGRRRFLDRMTLSFLPDHADQSLAYEKAMRERNRLLKDMVREPSWYVALEQQ 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCALKEEYA 248 MAE G I+ RV + A++ Q E FP T LD D A E Sbjct: 185 MAEAGSAIHANRVAALQAITE---AQAQAETAFP------TATLDLICDMPPTA--EGLR 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + L D R D + RTLIGPHR+DL Y K + STGEQK +LV + LA+AR ++ Sbjct: 234 QALADNRMRDLSAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILANARALA 293 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 G P+LLLDE++AHLD D+R AL+ ++ +G+Q +MTGT + +FD+L A+ + ++ Sbjct: 294 ADFGAPPLLLLDEVAAHLDADRRAALYDELSALGAQAWMTGTGEELFDTLGPRAQRLEVT 353 Query: 369 N 369 Sbjct: 354 E 354 >gi|254467269|ref|ZP_05080680.1| DNA replication and repair protein RecF [Rhodobacterales bacterium Y4I] gi|206688177|gb|EDZ48659.1| DNA replication and repair protein RecF [Rhodobacterales bacterium Y4I] Length = 365 Score = 228 bits (582), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 134/377 (35%), Positives = 202/377 (53%), Gaps = 35/377 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L FD + G+NG GKTNILEA+S SPGRG RRAS A++ Sbjct: 2 LALTALTLSHFRSHLRAELRFDGRPVAIYGNNGAGKTNILEAVSLFSPGRGLRRASAAEM 61 Query: 65 TRIGSPSFFSTFARVE------------GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 R P + E EG A +K+ D++S L + V Sbjct: 62 AR--QPEALGWKLKGELRAPRQAYEVETWSEGGAARQVKI---DNKSASQLALGQVA--- 113 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 R+ WL+P+MDR++ + RRRFLDR+ + +P H + +E+ MR RNRL Sbjct: 114 --------RVVWLIPAMDRLWIEAAEGRRRFLDRIALSFEPGHAEASLVYEKAMRERNRL 165 Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 L E D++W +E +MA G +I+ ARV+ + L E + FP +L L Sbjct: 166 LKEQVRDAAWYRVLEDRMAAAGHRIHAARVQAVELLQQAQAEA--ETAFPAAELELL--- 220 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + + S + + ++ + L + R D + RTL+GPHR+DL+ Y K I STGEQ Sbjct: 221 --QSEGSMPSSETDFKEALEESRFRDLAAGRTLVGPHRTDLLGTYRAKGIPAKDCSTGEQ 278 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 K +LV + LA+AR ++ G PILLLDE++AHLD +R AL+ + +G+Q +MTGT Sbjct: 279 KALLVSLILANARALAQREGAPPILLLDEVAAHLDAGRRAALYDEICALGTQAWMTGTGP 338 Query: 353 SVFDSLNETAKFMRISN 369 +F L A+ + +S+ Sbjct: 339 ELFAELEGRAQVLEVSD 355 >gi|260753853|ref|YP_003226746.1| recombination protein F [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553216|gb|ACV76162.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 376 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 208/372 (55%), Gaps = 18/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L++ +FR++ +RL +A I G+NGVGKTNILEAIS LSPGRGFR + D+ R Sbjct: 3 ISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDLVR 62 Query: 67 IGSPSFFSTFARVEGMEG---LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 F+ A++ +E + ++I + S R +++N V + L++ L I Sbjct: 63 REGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTTSA-NALSEWLAIL 121 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 WL P+MDR+F + RRRFLDR+ I P H R +E MR RN+LL+ E +D W Sbjct: 122 WLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGYDPLW 181 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGK----- 235 +E MAE I +AR ++++ LS E ++E+ F L+L +D + Sbjct: 182 LDGLEQIMAEQATHILLARRQLVDLLSE---EIAKQEDGLFAKADLALEEGVDSRDLVTH 238 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + L + +K R D+ RTL G HR+DL V + KA+ A STGEQK + Sbjct: 239 NSEEIMPLLQNIWQK---SRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGEQKAL 295 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+G+ LA LI+ G P+LLLDE++AHLD +R LF I+ G Q++MTGT+ S+F Sbjct: 296 LLGLVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLF 355 Query: 356 DSLNETAKFMRI 367 ++ + A + ++ Sbjct: 356 ETAEDAACYFQL 367 >gi|84684519|ref|ZP_01012420.1| recombination protein F [Maritimibacter alkaliphilus HTCC2654] gi|84667498|gb|EAQ13967.1| recombination protein F [Rhodobacterales bacterium HTCC2654] Length = 371 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 198/365 (54%), Gaps = 9/365 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +S FR++ L DA+ G NG GKTNILEA+S +SPGRG R AS D+ Sbjct: 4 LYLRELTLSHFRSHRRAVLSLDARPIAIFGRNGAGKTNILEAVSLMSPGRGLRGASAEDM 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + ++ + + ++ E R+V D L + R++W Sbjct: 64 ARRPESVGWKLTGVLQSLHQVHEVETWAEPGGSRNVTI----DGKTAAQVALGRISRVTW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP MDR++ + RR+FLDRM + +P H ++ +E+ MR RNRLL +G+ D+ W Sbjct: 120 LVPVMDRLWMEGADGRRKFLDRMAMSFEPGHGEAVLTYEKAMRDRNRLLKDGHRDAHWYG 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++EAQMA+ G I R + + M + FP +L L L + ++ + Sbjct: 180 ALEAQMAKAGAAIQENRRRTVALIVGAQMS--AQTAFPAAELQL---LHAEGAETGPEGE 234 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E A+ + R D M+ RTL+GPHR+DL Y +KA+ STGEQK +LV + LAH Sbjct: 235 AELAEAYAESRPRDLMAGRTLVGPHRADLAATYAEKAMPARECSTGEQKALLVSLILAHG 294 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G P+LLLDE+SAHLD D+R AL+ + +G+Q F+TGT +F L A Sbjct: 295 RALAQDFGAPPMLLLDEVSAHLDADRRAALYDEIVALGAQAFLTGTGPELFTELGARAMH 354 Query: 365 MRISN 369 + + + Sbjct: 355 IEVRD 359 >gi|258542324|ref|YP_003187757.1| recombination protein F [Acetobacter pasteurianus IFO 3283-01] gi|256633402|dbj|BAH99377.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-01] gi|256636461|dbj|BAI02430.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-03] gi|256639514|dbj|BAI05476.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-07] gi|256642570|dbj|BAI08525.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-22] gi|256645625|dbj|BAI11573.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-26] gi|256648678|dbj|BAI14619.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-32] gi|256651731|dbj|BAI17665.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654722|dbj|BAI20649.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-12] Length = 382 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 136/363 (37%), Positives = 194/363 (53%), Gaps = 8/363 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S FRNY L DA + G+NG GKTN+LEA+S LSPGRG R A R+G+ Sbjct: 17 LTLSNFRNYERLAWSPDASLLVLTGENGSGKTNLLEAVSLLSPGRGLRAAPLTQFGRMGA 76 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + + AR+E + ++ + +R R +N IR + L W+ P M Sbjct: 77 -TNWGVSARIETEDEFLELGTGTQGGQERPRRVFLLNGRQIRGQEAWEDTLATVWITPQM 135 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 DR+FS + RRRFLDR+V A+ P H R + ++R M RNRLL + + SW S +EA Sbjct: 136 DRLFSEGASGRRRFLDRLVMAVTPHHARELAAYDRAMTQRNRLLQTRFSEHSWLSGLEAS 195 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCALKEEY 247 MA V + AR E + I Y Q FP +L + K + S E++ Sbjct: 196 MARHAVAVAAARQETVRQ----ICHYAQNGLGAFPAAIATLECAVAQKLETSPALAVEDW 251 Query: 248 AK-KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + KL D R+ D+ R G HRSD +++ A STG+QK +L+G+ LAHARL Sbjct: 252 LREKLADLREDDAARGRATFGTHRSDFLLEDLTSRQPAALASTGQQKSLLIGVVLAHARL 311 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 +++ G PILLLDE HLD +R +L IV D + + +TGTD++ F L +TA+F Sbjct: 312 VTDYRGQPPILLLDEPLVHLDAARRASLLEIVQDFRTTVLLTGTDQAPFAPLKQTAQFET 371 Query: 367 ISN 369 + N Sbjct: 372 LKN 374 >gi|23428630|gb|AAM12398.1| recombinase F [Zymomonas mobilis subsp. mobilis CP4] Length = 376 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 208/372 (55%), Gaps = 18/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L++ +FR++ +RL +A I G+NGVGKTNILEAIS LSPGRGFR + D+ R Sbjct: 3 ISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDLVR 62 Query: 67 IGSPSFFSTFARVEGMEG---LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 F+ A++ +E + ++I + S R +++N V + L++ L I Sbjct: 63 REGDGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTTSA-NALSEWLAIL 121 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 WL P+MDR+F + RRRFLDR+ I P H R +E +R RN+LL+ E +D W Sbjct: 122 WLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAIRQRNKLLSDEKGYDPLW 181 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGK----- 235 +E MAE I +AR ++++ LS E ++E+ F L+L +D + Sbjct: 182 LDGLEQIMAEQATHILLARRQLVDLLSE---EIAKQEDGLFAKADLALEEGVDSRDLVTH 238 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + L + +K R D+ RTL G HR+DL V + KA+ A STGEQK + Sbjct: 239 NSEEIMPLLQNIWQK---SRTSDAAIGRTLQGVHRTDLKVTHHAKAMPAAQSSTGEQKAL 295 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+G+ LA LI+ G P+LLLDE++AHLD +R LF I+ G Q++MTGT+ S+F Sbjct: 296 LLGLVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLF 355 Query: 356 DSLNETAKFMRI 367 ++ E A + ++ Sbjct: 356 ETAGEAACYFQL 367 >gi|126734080|ref|ZP_01749827.1| DNA replication and repair protein RecF, putative [Roseobacter sp. CCS2] gi|126716946|gb|EBA13810.1| DNA replication and repair protein RecF, putative [Roseobacter sp. CCS2] Length = 366 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 191/365 (52%), Gaps = 15/365 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + DA+ G NG GKTN+LEA S LSPGRG RRA D+ Sbjct: 4 LALTELTLSHFRSHKRAAITLDARPLAIFGPNGAGKTNVLEAASLLSPGRGLRRAGADDL 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + A ++ + +I E + R +R D L + RI W Sbjct: 64 TRRPEALGWKITAILQSLHQTHEIETWAEAGNPRQLRI----DGKAAPQTALGRIARILW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVPSMDR++ + RRRFLDR + +P H ++ +++ MR RNRLL + D W + Sbjct: 120 LVPSMDRLWIEGAEGRRRFLDRATLSFEPTHAEAVLTYDKAMRERNRLLKDMVRDPHWYT 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +IE QMAE G I R I L++ + FP L+LT S + Sbjct: 180 AIEGQMAEAGAAIQKNRHRAIAELTT--AQEAATTAFPTAMLTLT---------SAEPIP 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L D R D + RTLIGPHR+DL + DK + STGEQK +L+ + LA+ Sbjct: 229 DNLQTALADNRNRDMAAGRTLIGPHRADLDAVFADKGVPAKDCSTGEQKALLISLILANG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G PILLLDE++AHLD +R AL+ + +G+Q FMTGT +F L A++ Sbjct: 289 RALARDFGAPPILLLDEVAAHLDAARRAALYDEICSLGAQAFMTGTGAELFAELGRRAQY 348 Query: 365 MRISN 369 + ++ Sbjct: 349 VEVTE 353 >gi|332188891|ref|ZP_08390596.1| DNA replication and repair RecF family protein [Sphingomonas sp. S17] gi|332011073|gb|EGI53173.1| DNA replication and repair RecF family protein [Sphingomonas sp. S17] Length = 347 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 141/350 (40%), Positives = 200/350 (57%), Gaps = 23/350 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +++FRN+A L L A + G+NG GKTN+LEA+S L+PGRG RRA+ + + R G Sbjct: 5 LVLTDFRNHADLALNPGAGFVVLTGENGAGKTNVLEAVSLLAPGRGLRRAALSAMARQGG 64 Query: 70 PSFFSTFARVEGMEGLADISIK---LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F A + G D+ I L + +R V +Q + L L + WL Sbjct: 65 KGGFGVAATLNG-----DVEIATGALPSAPERRVVRVQGAGAS---ANALADWLSVLWLT 116 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P+MDR+F + ERRRFLDR+V A+ P H ++ MR RNRLL ++G D W S+ Sbjct: 117 PAMDRLFVEPASERRRFLDRLVLALAPAHGMHATRYDAAMRERNRLLASDGPVDPDWLSA 176 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +EA+M E G ++ ARV + AL +E V F L+L G D + Sbjct: 177 LEARMVEHGAALDAARVAAVAALDQR-LEEVPDSVFARASLALEGE---AVDPA------ 226 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 +A L GR+ D+ + RTL+GPHR+DL+V + K A STGEQK +L+GI LAHA Sbjct: 227 AFAHALAMGRRRDAAAGRTLVGPHRADLLVTHVAKGQAAALCSTGEQKALLLGIVLAHAD 286 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L++ G AP+LLLDE++AHLD +R ALF + G Q++MTGT+ ++F Sbjct: 287 LVTERRGAAPVLLLDEVAAHLDPSRRAALFERLAGRG-QVWMTGTEPALF 335 >gi|85705683|ref|ZP_01036780.1| recombination protein F [Roseovarius sp. 217] gi|85669673|gb|EAQ24537.1| recombination protein F [Roseovarius sp. 217] Length = 369 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 209/372 (56%), Gaps = 25/372 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + RL DA+ G NG GKTN++EA+S LSPGRG RRA+ D+ Sbjct: 4 LSLSELTLSHFRSHKAARLSLDARPVAIHGPNGAGKTNLIEAVSLLSPGRGLRRAAAQDM 63 Query: 65 TRIGSP------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 R + + +V +E A+ S + R L+I+ + L + Sbjct: 64 ARRPEALGWKITTILHSLHQVHEVETFAEGS---------AARQLRIDGKTATQI-ALGR 113 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 R+ WLVP+MDR++ + RRRFLDRM + P H + +E+ MR RNRLL + Sbjct: 114 IARVLWLVPAMDRLWIEGAEGRRRFLDRMTMSFVPSHAEATLAYEKAMRERNRLLKDQVR 173 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFD 237 D+ W ++E Q+A+ G +I+ R +AL+ + +Q E FP +L LT +G+ Sbjct: 174 DAQWYLALERQLADAGAEIHANRQ---HALALIAGAQMQAETAFPTAELELTQ-TEGEMP 229 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++ E+ + L + R D ++ RTLIGPHR+DL Y K + A STGEQK +LV Sbjct: 230 ET----AEDLRQALAESRFRDLVAGRTLIGPHRADLYGVYAAKGVPAADCSTGEQKALLV 285 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA+AR ++ G P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F Sbjct: 286 SLILANARALARDFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFSE 345 Query: 358 LNETAKFMRISN 369 L + A+ + +++ Sbjct: 346 LGDRAQHIHVTD 357 >gi|254437923|ref|ZP_05051417.1| hypothetical protein OA307_2793 [Octadecabacter antarcticus 307] gi|198253369|gb|EDY77683.1| hypothetical protein OA307_2793 [Octadecabacter antarcticus 307] Length = 369 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 200/370 (54%), Gaps = 13/370 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +S FR++ L D + G NG GKTNILEA+S LSPGRG RRAS D+TR Sbjct: 6 LSHLTLSHFRSHKRATLDLDGRTVAIYGPNGAGKTNILEAVSILSPGRGLRRASSEDMTR 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + A + + +I E R + D L + R+ WL+ Sbjct: 66 RPEALGWKVTADLTSLNQRHEIESWSENGGSRQTKI----DGKAAAQTALGRIGRVLWLI 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P+MDR++ + RRRFLDR + +P H + +E+ MR RNRLL + D+ W S++ Sbjct: 122 PAMDRLWIEGAEGRRRFLDRATLSFEPGHADAALKYEKAMRERNRLLKDMVRDAHWYSAL 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E QMA+ G +I+ R+E ++ L++ + + FP L+LT D + A + Sbjct: 182 ERQMADAGAQIHRNRLETLDLLTN--AQQAAQTAFPTAWLTLT-----HSDPACDAPDDP 234 Query: 247 YA--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A + R D + RTLIGPHR+DL + K + STGEQK +L+ + LA+A Sbjct: 235 IALLAAFANNRPRDMAAGRTLIGPHRADLDAIFAAKDVPAKDCSTGEQKALLISLILANA 294 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R +++ G PILLLDE++AHLD +R AL+ ++ +G+Q FMTGT +FD L A++ Sbjct: 295 RALADDFGAPPILLLDEVAAHLDATRRAALYSEISALGAQAFMTGTGLELFDELGAAAQY 354 Query: 365 MRISNHQALC 374 + +++ + Sbjct: 355 VHVTDENGVS 364 >gi|114798067|ref|YP_759290.1| DNA replication and repair protein RecF [Hyphomonas neptunium ATCC 15444] gi|114738241|gb|ABI76366.1| DNA replication and repair protein RecF [Hyphomonas neptunium ATCC 15444] Length = 370 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 212/370 (57%), Gaps = 17/370 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++++FRNYA L L DA+ G NG GKTN+LEA+S PGRG R A +++TR + Sbjct: 7 LSLTDFRNYAGLTLRLDARPVCLYGSNGAGKTNLLEAVSQFGPGRGLRSAQLSEMTRRDA 66 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P ++ A ++ + ISI L+T + R ++I+ D L + +RI WL P+M Sbjct: 67 PGGWALAATLDDEQ---KISITLDTAGT-AKRTVRIDGAPASPGD-LAERIRIVWLTPAM 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 D +F G + +RRRF DR+V A P H + +++ + RN L+ G+ D +W +IEA+ Sbjct: 122 DGVFRGGASDRRRFFDRLVMAHLPAHGKAAARYDKALAERNALIERGHVDPAWADAIEAR 181 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK------FDQSFCAL 243 +AE G ++ I R ++ AL + ++ + +FP L+L G + F F L Sbjct: 182 LAEAGTEMAINRAIVLEAL-QIAIDARPEGHFPKADLTLEGAAEAAALKGEDFRTIFDLL 240 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + Y GR+ D + RTL GPHR+DL V + A STG+QK +L+G+ LA Sbjct: 241 VDAY----HSGRRRDIGAGRTLSGPHRTDLAVIHRPTAAPAGEASTGQQKALLIGLVLAS 296 Query: 304 ARLIS-NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 A +S +G +P+LLLDE +AHLD D+R ALF +T +G Q ++TGT+ +F++ + A Sbjct: 297 ATALSAGGSGPSPLLLLDEAAAHLDPDRRAALFDELTVLGGQAWLTGTEAFLFEAFGDRA 356 Query: 363 KFMRISNHQA 372 + +R+ A Sbjct: 357 QRIRVDEGSA 366 >gi|85374625|ref|YP_458687.1| recombination protein F [Erythrobacter litoralis HTCC2594] gi|84787708|gb|ABC63890.1| recombinational DNA repair ATPase [Erythrobacter litoralis HTCC2594] Length = 361 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 194/362 (53%), Gaps = 14/362 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 + +S RN+A RL A+ + VG+NG GKTN+LEAIS L+PGRG RRA+ D+ R G Sbjct: 6 ITLSNLRNHAETRLQGTARFNLLVGENGAGKTNVLEAISLLAPGRGLRRAALPDIARAGG 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWLVPS 128 F+ A + +G + + R R +++N V L + L I WL P+ Sbjct: 66 GGGFTVGASLTPGDGGEPVQLGTMVDPARPGRRRVRVNGAEASAVS-LGEWLAIGWLTPA 124 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWCSSIE 187 MD IF G + +RRRF+DRM A+DP H R +E ++R RNRLL E D +W IE Sbjct: 125 MDGIFMGPAGDRRRFVDRMALALDPLHARHASRYENVLRERNRLLGDEREPDPTWLDGIE 184 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 AQMA+ G + +R ++ L + + + P + L + F++ E Sbjct: 185 AQMAKHGSALAQSRARLVGVLVETLASHPDE---PFARPLLAILTESPFEE------EAL 235 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L R D + RTLIGPHR DL V K A STGEQK +L+ I LAH L Sbjct: 236 RVALRANRGRDRRAGRTLIGPHRDDLTVTMAGKDTPAASCSTGEQKAMLIAITLAHGELA 295 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 + G ++LLDE++AH+D +R ALF + + G+Q++MTGT+ + F ++ A R+ Sbjct: 296 AR--GRPGVMLLDEVAAHIDPVRREALFERLRETGAQVWMTGTELAPFAAIEAEAAVWRV 353 Query: 368 SN 369 S Sbjct: 354 SG 355 >gi|254486983|ref|ZP_05100188.1| DNA replication and repair protein RecF [Roseobacter sp. GAI101] gi|214043852|gb|EEB84490.1| DNA replication and repair protein RecF [Roseobacter sp. GAI101] Length = 365 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 195/364 (53%), Gaps = 16/364 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +S FR++ + D + G NG GKTNILEA+S LSPGRG RR+S D+TR Sbjct: 6 ISHLTLSHFRSHKRAIVDSDTRPVAIHGPNGAGKTNILEAVSLLSPGRGLRRSSALDMTR 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + A + + +I I E R VR D L + R+ WL+ Sbjct: 66 RPEALGWKVTALLHSLGSAHEIEIWSEAGAARQVRI----DGKATPQTALGRIARVLWLI 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 PSMDR++ + RRRFLDRM + P H + + +E+ MR RNRLL + + SW ++ Sbjct: 122 PSMDRLWIEGAEGRRRFLDRMTLSFLPDHAEQSLAYEKAMRERNRLLKDMVREPSWYLAL 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCALKE 245 E Q+AE G I+ R +AL ++ Q E FP LSL D A + Sbjct: 182 EQQLAEAGAAIHANRQ---SALQAITEAQSQAETAFPTATLSLI------CDMPTTA--Q 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 + L D R D + RTLIGPHR+DL Y K + STGEQK +LV + LA+AR Sbjct: 231 DLRAALADNRMRDLAAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILANAR 290 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 ++ G P+LLLDE++AHLD +R AL+ +T +G+Q +MTGT +FDSL A+ + Sbjct: 291 ALAADFGAPPLLLLDEVAAHLDASRRAALYDEITALGAQAWMTGTGAELFDSLGPRAQML 350 Query: 366 RISN 369 ++ Sbjct: 351 EVTE 354 >gi|83941667|ref|ZP_00954129.1| recombination protein F [Sulfitobacter sp. EE-36] gi|83847487|gb|EAP85362.1| recombination protein F [Sulfitobacter sp. EE-36] Length = 365 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 137/361 (37%), Positives = 198/361 (54%), Gaps = 16/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S FR++ + D + G NG GKTNILEA+S LSPGRG RR+S +D+TR Sbjct: 9 LTLSHFRSHKRAVIDCDTRPVSIFGPNGAGKTNILEAVSLLSPGRGLRRSSASDMTRRPE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + A + + + ++ I E R VR D L + R+ WL+PSM Sbjct: 69 ALGWKITAHLRSLGQIHEVEIWSEAGAARQVRI----DGKATAQTGLGRIARVLWLIPSM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 DR++ + RRRFLDRM + P H + + +E+ MR RNRLL + + SW ++E Q Sbjct: 125 DRLWIEGAEGRRRFLDRMTLSFLPDHADQSLAYEKAMRERNRLLKDMVREPSWYVALEQQ 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCALKEEYA 248 MAE G I+ RV + A++ Q E FP T LD D A E Sbjct: 185 MAEAGSAIHANRVAALQAITE---AQAQAETAFP------TATLDLICDMPTTA--EGLR 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + L D R D + RTLIGPHR+DL Y K + STGEQK +LV + LA+AR ++ Sbjct: 234 QALADNRMRDLSAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILANARALA 293 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 G P+LLLDE++AHLD ++R AL+ ++ +G+Q +MTGT + +FD+L A+ + ++ Sbjct: 294 ADFGAPPLLLLDEVAAHLDANRRAALYDELSALGAQAWMTGTGEELFDTLGPRAQRLEVT 353 Query: 369 N 369 Sbjct: 354 E 354 >gi|89052494|ref|YP_507945.1| recombination protein F [Jannaschia sp. CCS1] gi|88862043|gb|ABD52920.1| DNA replication and repair protein RecF [Jannaschia sp. CCS1] Length = 375 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 199/367 (54%), Gaps = 13/367 (3%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ + L +S FR++ R+ D + G NG GKTN++EA+S LSPGRG RRA+ Sbjct: 12 SKVFVSSLALSHFRSHRRARMELDGRPVALFGPNGAGKTNLMEAVSLLSPGRGLRRAAAE 71 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ R + A + G DI++ E R+ Q++ + L + LRI Sbjct: 72 EIIRRPEAIGWKVSAEISGPSINHDITLTAEPGQPRTT---QVDGKTAPQI-ALARLLRI 127 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WLVPS DR++S + RRRFLDR+ + P H ++ +E+ MR RNRLL + D +W Sbjct: 128 VWLVPSQDRLWSEGAEGRRRFLDRITLSFLPDHADAVLTYEKAMRERNRLLRDDARDPAW 187 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++EAQMA+ V+I R + + +S+ + FP L + + C Sbjct: 188 YRALEAQMADAAVRIVNGRDDALTRISA--AQNGAATAFPAADLGIE-------TEHPCQ 238 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ + R D + RTLIGPHR+D+ Y DK + STGEQK +L+ + L+ Sbjct: 239 TVDDFIQAFEGSRPRDLAAGRTLIGPHRADMSAIYRDKGVPAKQCSTGEQKALLISLILS 298 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +AR + TG AP++LLDE++AHLD +R ALF + + +Q +MTGT +F L + A Sbjct: 299 NARALKAETGTAPLVLLDEVAAHLDAGRRAALFDEICALEAQAWMTGTGPELFAELGDRA 358 Query: 363 KFMRISN 369 + I+ Sbjct: 359 QHFEITE 365 >gi|114762140|ref|ZP_01441608.1| recombination protein F [Pelagibaca bermudensis HTCC2601] gi|114545164|gb|EAU48167.1| recombination protein F [Roseovarius sp. HTCC2601] Length = 369 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 197/371 (53%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + DA+ G NG GKTN++EA+S LSPGRG RRAS ++ Sbjct: 4 LHLSSLTLSHFRSHKRAAVEVDARPVAIFGPNGAGKTNLIEAVSLLSPGRGMRRASAQEM 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + A + G EG ++IS++ E+ R V D L + R+ W Sbjct: 64 TRRPEALGWKIGAVLHGPEGASEISVRSESGGSRQVEI----DGKPAPQTALGRIARVLW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+PSMDR++ RRRFLDRM + P H + +E+ MR RNRLL E D+ W + Sbjct: 120 LIPSMDRLWIEAPEGRRRFLDRMTLSFFPDHADASLTYEKAMRERNRLLKEQIRDAHWYA 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E QMA+ G I + + + +FP L+L + + Sbjct: 180 ALETQMAQSGALIQ--QNRQAALARLARAQDGAETSFPAADLALV-----STEADIPETE 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ +GR D + RTL+GPHRSDL + K + + STGEQK +L+ + LA+A Sbjct: 233 EDLRAVFAEGRFRDMAAGRTLVGPHRSDLYGVFAAKGVPASDCSTGEQKALLISLILANA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F L + A+ Sbjct: 293 RALAAEIGAPPLLLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFAELGDRAQR 352 Query: 365 MRISNHQALCI 375 ++++ + Sbjct: 353 LQVTEEAGQSV 363 >gi|149912810|ref|ZP_01901344.1| recombination protein F [Roseobacter sp. AzwK-3b] gi|149813216|gb|EDM73042.1| recombination protein F [Roseobacter sp. AzwK-3b] Length = 370 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 191/366 (52%), Gaps = 13/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L +S FR++ RL DA+ G NG GKTNILEA+S SPGRG RRA+ D+ Sbjct: 4 LHISRLTLSHFRSHKGARLDVDARPVAIYGPNGAGKTNILEAVSLFSPGRGLRRAAAQDM 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + + L ++ + E R R D L + R+ W Sbjct: 64 ARRPEALGWKVTGILHSLHQLHEVELWSEEGAARQTRI----DGKPAAQTALGRIARVLW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVPSMDR++ + RRRFLDRM + P H + +E+ MR RNRLL + D+ W Sbjct: 120 LVPSMDRLWIEGTEGRRRFLDRMTLSFRPDHADISLTYEKAMRERNRLLKDQVRDAHWYV 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCAL 243 ++E Q+AE G I+ R + AL L Q E FP L L + Sbjct: 180 ALERQLAETGAAIHANR---LYALDQLREAQAQAETAFPAADLDLI-----STEADMPDT 231 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + A+ L + R D + RTLIGPHR+DL Y K + STGEQK +LV + LA+ Sbjct: 232 PADLAEALAESRFRDLAAGRTLIGPHRADLYGVYAAKGVPARDCSTGEQKALLVSLILAN 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 AR ++ G P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F L + A+ Sbjct: 292 ARALARDFGAPPLLLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFSDLGDRAQ 351 Query: 364 FMRISN 369 ++ ++ Sbjct: 352 YIEVTE 357 >gi|119385560|ref|YP_916615.1| recombination protein F [Paracoccus denitrificans PD1222] gi|119376155|gb|ABL70919.1| DNA replication and repair protein RecF [Paracoccus denitrificans PD1222] Length = 358 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 200/370 (54%), Gaps = 31/370 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR++A L + D + G NG GKTNILEA+S LSPGRG R A+ D Sbjct: 1 MTLSLLHLTQFRSWARLEIEADHRPVAIHGPNGAGKTNILEAVSMLSPGRGMRGAAPGDQ 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-------LN 117 R G + A + G + + R V V+DE L Sbjct: 61 ARKGPEVGWQIRAEI----GTHQVLTRALPGQPREV-----------VIDEKPSTQIALG 105 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 + +R+ WL P+MDR+++ +RRRFLDR+ + P H + +E+ MR RNRLL + Sbjct: 106 RLMRVIWLTPAMDRLWTDAPEQRRRFLDRVTLSFTPGHAEDALGYEKAMRERNRLLRDEV 165 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 D+ W ++EAQMAE G + R++ I + + + FP L+L +G D Sbjct: 166 RDAGWYRALEAQMAETGAALTRNRLDAIARI--MAAQEGAGTAFPSASLTLLPG-EGSAD 222 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 E A +L +GR D + RTL GPHR+DL + +A+ A STGEQK +L+ Sbjct: 223 DPDA---ESIAARLAEGRGRDMAAGRTLTGPHRADLGAHWGPQAMPAALSSTGEQKALLL 279 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA+AR ++ + P+LLLDE++AHLD D+R AL+ + + +Q ++TGT +F++ Sbjct: 280 SLILANARALAEES---PVLLLDEVAAHLDADRRAALYDEICALRAQAWLTGTGPELFEA 336 Query: 358 LNETAKFMRI 367 L A+F+ + Sbjct: 337 LRGRAQFLAV 346 >gi|94495802|ref|ZP_01302381.1| DNA replication and repair protein RecF [Sphingomonas sp. SKA58] gi|94424494|gb|EAT09516.1| DNA replication and repair protein RecF [Sphingomonas sp. SKA58] Length = 357 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 200/365 (54%), Gaps = 16/365 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +S+FRN+A ++ D + GDNG GKTNILEA+S L+PGRG R A+ + R Sbjct: 2 IGRLTLSDFRNHADALILPDHAFVLLTGDNGAGKTNILEAVSMLAPGRGLRGAALGAMAR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F A V+G+ + + + R VR + + L HL I+WL Sbjct: 62 QEGAGGFGIAAEVDGV--VLGTGVAASAPERRQVRIGGVGSSA----NALADHLAITWLT 115 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185 P+MDR+F RRRFLDR+ A+ P H ++ MR RNRLL + D +W S+ Sbjct: 116 PAMDRLFLDSPGGRRRFLDRLTLALHPGHAAHSARYDAAMRARNRLLGDLRTADPAWLSA 175 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +EAQM + G+ ++ AR +++ L+ ++ ++ + P + + +++ +E Sbjct: 176 LEAQMDDHGLVLSAARADLVARLNDIL---ARQPDAPFARPMIA------IEEAEPQGEE 226 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 A +L R+ D+ + R+L GPHR DL V + K A STGEQK +L+ I LAHA Sbjct: 227 PLAMRLARQRRRDAAAGRSLSGPHRHDLAVTHVAKGQAAALCSTGEQKALLLSILLAHAA 286 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+++ G P+LLLDE++AHLD +R ALF + + G QI+MTGT+ S+F L + Sbjct: 287 LVADERGQPPVLLLDEVAAHLDPLRRAALFDRLAETGGQIWMTGTEPSLFSDLTAATRLT 346 Query: 366 RISNH 370 + H Sbjct: 347 VTAGH 351 >gi|329113487|ref|ZP_08242268.1| DNA replication and repair protein RecF [Acetobacter pomorum DM001] gi|326697312|gb|EGE48972.1| DNA replication and repair protein RecF [Acetobacter pomorum DM001] Length = 382 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 192/363 (52%), Gaps = 8/363 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S FRNY L +A + G+NG GKTN+LEA+S LSPGRG R A R+G+ Sbjct: 17 LTLSNFRNYERLVWSPNASLLVLTGENGSGKTNLLEAVSLLSPGRGLRAAPLTQFGRMGA 76 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 ++ AR+E + ++ + +R R +N IR + L W+ P M Sbjct: 77 INW-GVSARIETKDEFLELGTGTQGGQERPRRVFLLNGRQIRGQEAWEDTLATVWITPQM 135 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 DR+FS + RRRFLDR+V A+ P H R + ++R M RNRLL + + SW S +EA Sbjct: 136 DRLFSEGASGRRRFLDRLVMAVTPHHARELAAYDRAMTQRNRLLQTRFSEHSWLSGLEAS 195 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCALKEEY 247 MA V + AR E + I Y Q FP +L + K + S E++ Sbjct: 196 MARHAVAVAAARQETVRQ----ICHYAQNGLGAFPAAIATLQCAIAQKLETSPALTVEDW 251 Query: 248 -AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 KL + R+ D+ R G HRSD +++ A STG+QK +L+GI LAHARL Sbjct: 252 LCAKLAELREDDAARGRATFGTHRSDFLLEDLSSRQPAALASTGQQKSLLIGIVLAHARL 311 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 +++ G PILLLDE HLD +R +L IV D + + +TGTD++ F L +A+F Sbjct: 312 VTDYRGQPPILLLDEPLVHLDAARRASLLEIVQDFRTTVLLTGTDQAPFAPLKHSAQFET 371 Query: 367 ISN 369 + N Sbjct: 372 LKN 374 >gi|87199175|ref|YP_496432.1| recombination protein F [Novosphingobium aromaticivorans DSM 12444] gi|87134856|gb|ABD25598.1| DNA replication and repair protein RecF [Novosphingobium aromaticivorans DSM 12444] Length = 357 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 143/353 (40%), Positives = 191/353 (54%), Gaps = 18/353 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN+A+ RL + VG+NG GKTN+LEAIS L+PGRG RRA A++ Sbjct: 1 MSLTRLTLRDFRNHAATRLEGMRAFNVLVGENGAGKTNVLEAISLLAPGRGLRRAQPAEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ A +E +G I + D R ++IN V L + L I+W Sbjct: 61 AGREGPGGFAIAAEME--DGAVQIGTAT-SPDAPGRRSVRINGVEGPAA-RLAEWLSITW 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 L P+MDRIF+ + RRRFLDR+V A DP H R +E +R RNRLL E D W Sbjct: 117 LTPAMDRIFAESAGSRRRFLDRLVLARDPGHARNATRYETALRERNRLLGEVAEPDPLWL 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 IEAQMAE G + AR E++ LS ++E V + F L + D L Sbjct: 177 DGIEAQMAETGAAMAAARTELVADLSR-VLETVPDQPFARPSLRYASEVPPDADGLRAML 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + + R+LIGPHR DL V K A STGEQK +L+ I LAH Sbjct: 236 REGRRRD--------RAAGRSLIGPHRDDLAVLLAAKNAPAADCSTGEQKAMLIAIVLAH 287 Query: 304 ARLISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 A L T G P +LLLDEI+AHLD +R ALF + G+Q++MTGT+ + F Sbjct: 288 AGL---TAGERPRLLLLDEIAAHLDPVRRGALFERLATSGAQVWMTGTEMAPF 337 >gi|154243961|ref|YP_001414919.1| recombination protein F [Xanthobacter autotrophicus Py2] gi|154158046|gb|ABS65262.1| DNA replication and repair protein RecF [Xanthobacter autotrophicus Py2] Length = 378 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 137/366 (37%), Positives = 208/366 (56%), Gaps = 11/366 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ FR+Y S ++ + + G NG GKTNILEA+SFLSPGRG RRA ++ Sbjct: 6 IRKLTLTAFRSYPSAQVSVEDGPVVLTGPNGAGKTNILEALSFLSPGRGLRRAQLGEIGH 65 Query: 67 -----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 G P + + A VEG G + + + VR +I+ + HL+ Sbjct: 66 RAPGAAGEPPW-AVSALVEGALGEVRLGTGYDPVQEGGVRRCRIDGEPAPSANAFLDHLK 124 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + WL P MD +F G +RRR+LDR+V A+D H R+ ER +R RNRLL E + Sbjct: 125 VLWLTPEMDGLFLGPPGDRRRYLDRLVLAVDGAHGTRVNGLERALRSRNRLLEE-NGSAR 183 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSF 240 + ++E ++AEL V + AR+E + L + I + + FP +L+L G ++ + Sbjct: 184 FLDAVEHEVAELAVAVAAARLETVARLGAEIAAHRDDASLFPFAELALDGAVE-RLIAVH 242 Query: 241 CALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 AL+ E Y L D R D + RTL GPH +DL V + +K + A STGEQK +L+G Sbjct: 243 PALEVEDRYRALLRDNRPRDRAAGRTLEGPHLTDLSVSHGEKQLPAARCSTGEQKSLLIG 302 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + L+HARL+++ GF+PILLLD++ A+LD +R LF + +G+Q +MTG D + F +L Sbjct: 303 LTLSHARLVASMQGFSPILLLDDVVAYLDAARRTGLFEALARLGAQAWMTGADPTAFSAL 362 Query: 359 NETAKF 364 + +F Sbjct: 363 DGAERF 368 >gi|326388134|ref|ZP_08209737.1| recombination protein F [Novosphingobium nitrogenifigens DSM 19370] gi|326207300|gb|EGD58114.1| recombination protein F [Novosphingobium nitrogenifigens DSM 19370] Length = 395 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 202/375 (53%), Gaps = 36/375 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FRN+A+ RL A + VG+NG GKTN+LEAIS SPGRG RRA AD+ Sbjct: 37 MALTRLSLRDFRNHAATRLDGMATFNVLVGENGAGKTNVLEAISLFSPGRGMRRAHPADM 96 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLR 121 F+ A +E D +++L T + R ++IN L + L Sbjct: 97 ASNKGAGDFAVAAELE------DGAVQLNTATTPATPGRRTVRINGAETPAT-RLAEWLA 149 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDS 180 ++WL P+MDR+F+ + RRRFLDR+V A +P H R +E +R RNRLL E D Sbjct: 150 MTWLTPAMDRLFAEGATARRRFLDRLVLAGEPGHARIATRYEGALRERNRLLGEADEPDP 209 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 W ++E QMAE G ++ +R ++ L++ +L DG F + Sbjct: 210 VWLDALETQMAETGAQLAASRRALVERLNT----------------ALAAQDDGPFARPI 253 Query: 241 CALKEE-------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 A E +A L +GR+ D + RTL GPHR DL V K AH STGEQK Sbjct: 254 LAYNGETPVDASAFAAALRNGRRRDRAAGRTLTGPHRDDLDVVMAAKNAPAAHCSTGEQK 313 Query: 294 VVLVGIFLAHARLISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +L+ I LAHA L + G P +LLLDEI+AHLD +R+AL+ + G+Q++MTGT+ Sbjct: 314 ALLISIVLAHAAL-PDAGGERPRLLLLDEIAAHLDPLRRSALYERLAASGAQVWMTGTEP 372 Query: 353 SVFDSLNETAKFMRI 367 S F L A F R+ Sbjct: 373 SPFADLPAPAAFWRV 387 >gi|126724508|ref|ZP_01740351.1| recombination protein F [Rhodobacterales bacterium HTCC2150] gi|126705672|gb|EBA04762.1| recombination protein F [Rhodobacterales bacterium HTCC2150] Length = 371 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 206/365 (56%), Gaps = 15/365 (4%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 +S FR++ L D + G NG GKTNILEA+S LSPGRG RRA+ D++R Sbjct: 13 LSHFRSHKLLNQPLDGRPVAIFGPNGAGKTNILEAVSLLSPGRGLRRATADDLSRKPEAL 72 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + A + +I+++ E + R + I++ V L + +I WLVP+MDR Sbjct: 73 GWKVSATLNSPHRTHEIAMRAEAG---ASRVVTIDEKTAPQV-ALGRIAQILWLVPAMDR 128 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191 ++ + ERRRFLDR+ + P H ++ +++ MR RNRLL + D+ W ++E QMA Sbjct: 129 LWIEGAGERRRFLDRITLSFQPNHAEAVLSYDKAMRERNRLLKDHVRDAHWYLALEGQMA 188 Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF--CALKEEYAK 249 + G +I+ R++ ++ L+ + K FP L+L ++G+ + F +L+E Sbjct: 189 KSGAEIHRNRIDALSLLAK--AQSNAKTAFPAADLTL---IEGEENIGFDEASLRE---- 239 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + R D + RTL+GPHRSD+ + K I STGEQK +L+ + L++AR ++ Sbjct: 240 VLANNRPNDLRAGRTLVGPHRSDVAALFAAKGIDARQCSTGEQKALLISLILSNARALAT 299 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 PI+LLDE++AHLD+++R AL+ +T IG+Q FMTGT +F + A+ + +S Sbjct: 300 LNDAPPIILLDEVAAHLDDNRRAALYDEITAIGAQAFMTGTGVELFAEMKGRAQALYVSE 359 Query: 370 HQALC 374 L Sbjct: 360 SGGLS 364 >gi|159045915|ref|YP_001534709.1| recombination protein F [Dinoroseobacter shibae DFL 12] gi|157913675|gb|ABV95108.1| DNA replication and repair protein RecF [Dinoroseobacter shibae DFL 12] Length = 361 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 199/367 (54%), Gaps = 16/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++S FR++ L L D + + G NG+GKTN+LEA+SFLSPGRG RRA V Sbjct: 4 VAVTSLSLSHFRSHTHLTLSLDERPVVLHGPNGIGKTNVLEALSFLSPGRGLRRAKTEAV 63 Query: 65 --TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLR 121 + G S + G E ++ TR D R +Q++ + + L + + Sbjct: 64 GQSEAGLGWRVSALVKSGGRE------REVMTRSDAGASRTVQLDGKPVPQM-ALAELVP 116 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + WLVP+MDR++ + RR+FLDRM H R ++ +ER MR RNRLL +G D Sbjct: 117 MVWLVPAMDRLWIEAAEGRRKFLDRMTLNFVTTHGRDVLAYERAMRDRNRLLKDGVRDPH 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 W ++EAQMAE G +I R ++ + + + FP L + DG+ + Sbjct: 177 WYHALEAQMAEAGARITQNRQRCLSEIEAAQADATTA--FPFAGLQIEAH-DGR---APL 230 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 K E L R MD + RTL GPHR DL Y K STGEQK +L+ + L Sbjct: 231 RTKGEIENTLRCNRYMDQTAGRTLDGPHRDDLAAVYVSKGTPARDCSTGEQKALLISLIL 290 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 + +R + + G AP++LLDE++AHLD++++ AL+ + +G+Q +MTGT +F L E Sbjct: 291 SMSRAVKSLVGQAPLVLLDEVAAHLDQERQRALYDEICALGAQAWMTGTGAELFQPLGER 350 Query: 362 AKFMRIS 368 A+F+ + Sbjct: 351 AQFIALP 357 >gi|84501258|ref|ZP_00999463.1| recombination protein F [Oceanicola batsensis HTCC2597] gi|84390549|gb|EAQ03037.1| recombination protein F [Oceanicola batsensis HTCC2597] Length = 367 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 192/367 (52%), Gaps = 11/367 (2%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 R+ + L +S FR+Y L D + G NG GKT++LEA+S SPGRG RRA+ Sbjct: 2 GRLCLTRLTLSHFRSYRHAALAPDGRPVAIHGANGAGKTSLLEAVSMFSPGRGLRRAAAE 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D+ R + + + + ++ E RSVR D L + R+ Sbjct: 62 DLIRRPEALGWKLTGVLTSLRQVHELESTAEPGAARSVRI----DGKAAAQAALGRVARV 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WLVPSMDR++ + RRRFLDRM + P H + +E+ MR RNRLL + D W Sbjct: 118 LWLVPSMDRLWIEGAEGRRRFLDRMTLSFLPGHAEAALAYEKAMRERNRLLKDMVRDEHW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++EAQMAE G +I R ++ ++ P + LS +G+ A Sbjct: 178 YVALEAQMAEAGARITANRTRALSLIAGATAGAATAFPAPELSLS---HAEGELPDDAAA 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L+ L +GR+ D + RTLIGPHR DL + K I STGEQK +L+ + LA Sbjct: 235 LR----LALAEGRRRDLQAGRTLIGPHRVDLGARWAAKGIAARDASTGEQKALLISLILA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +AR ++ G PILLLDE++AHLD +R AL+ V +G+Q +MTGT +F L + A Sbjct: 291 NARALAGDFGAPPILLLDEVAAHLDAARRAALYDEVCALGAQAWMTGTGPELFADLGDRA 350 Query: 363 KFMRISN 369 + MR++ Sbjct: 351 QVMRVTE 357 >gi|296282365|ref|ZP_06860363.1| recombination protein F [Citromicrobium bathyomarinum JL354] Length = 361 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 194/367 (52%), Gaps = 24/367 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++I +FRN+ L A+ + VG NG GKTN+LEA+S L+PGRG RRA ++ RI Sbjct: 6 ISILDFRNHRQTALEDTARFNLLVGANGAGKTNVLEALSLLAPGRGLRRAKLPEMARIDG 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE------LNKHLRIS 123 P F+ AR++ +G + + V Q N +RV L++ L + Sbjct: 66 PGGFTVAARLQPADGAEPVQLGT------VVDAAQPNRRRVRVNGAERSALGLSEWLSVR 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 WL P+MD +F+ + RRR+LDR+ A P H +E +R RNRLL+ + D W Sbjct: 120 WLTPAMDGLFTDSAGARRRYLDRLALATAPGHAALSNRYETALRNRNRLLSDDAPPDPQW 179 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++EAQ+AE G I R ++ L+ +E FP L+ ++ + A Sbjct: 180 LDALEAQLAEHGAAIAANRRALVEELNR-ELEAQADALFPRPLLA----IEPTGPEEHTA 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L A L R+ + + RTLIGPHR++L V DK + A STGEQK +L+ I LA Sbjct: 235 L----ADALRGNRRTERRAGRTLIGPHRAELAVTLADKGVPAARASTGEQKAMLIAITLA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 H L T G A +LLLDE++AHLD +R ALF + G Q++MTGT++ FD + A Sbjct: 291 HGALA--TRGRAGLLLLDEVAAHLDPQRREALFARLAANGEQVWMTGTERMPFDPILPDA 348 Query: 363 KFMRISN 369 +S Sbjct: 349 AVWDVSG 355 >gi|83950588|ref|ZP_00959321.1| recombination protein F [Roseovarius nubinhibens ISM] gi|83838487|gb|EAP77783.1| recombination protein F [Roseovarius nubinhibens ISM] Length = 369 Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 188/358 (52%), Gaps = 11/358 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S FR++ L D + GDNG GKTN++EA+S +SPGRG RRA+ D+ R Sbjct: 9 LKLSHFRSHLGSALQLDPRPVAIHGDNGSGKTNLIEAVSLISPGRGLRRAAAQDMGRQPE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + + + + ++ I E R R D L + R+ WL+PSM Sbjct: 69 ALGWKLRGVLHSLHQVHELEIWSEGGAARQTRI----DGKPAAQVALARIARVLWLIPSM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 DR++ + RRRFLDRMV + P H + +E+ MR RNRLL + D W ++E Q Sbjct: 125 DRLWIEGAEGRRRFLDRMVMSFVPDHADVTLAYEKAMRERNRLLKDQVRDGHWYVALERQ 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MAE G+ I R +I+ L+ + FP L+L +G + EY Sbjct: 185 MAEAGLAIQANRQRVIDRLAQ--AQEGAATAFPAADLTLE-MAEGALPDG----EAEYRD 237 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L +GR+ D + RTL+GPHR+DL Y K + STGEQK +LV + LA+ R + Sbjct: 238 ALSEGRRRDLAAGRTLLGPHRADLQGVYAAKGVAAKDCSTGEQKALLVSLILANGRALRE 297 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 G PILLLDE++AHLD +R AL+ + +GSQ +MTGT +F L A+ + + Sbjct: 298 DFGAPPILLLDEVAAHLDAGRRAALYDEICALGSQAWMTGTGPELFAELGARAQHVEV 355 >gi|294085123|ref|YP_003551883.1| RecF protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664698|gb|ADE39799.1| RecF protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 418 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 203/368 (55%), Gaps = 8/368 (2%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++ + L ++ FRNY ++RL F + VG NG GKTN+LEAIS LSPG+G RRA A Sbjct: 35 QLWLSGLLLNNFRNYETVRLEFGQAPVVLVGANGAGKTNLLEAISLLSPGKGMRRAKTAH 94 Query: 64 VTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + RIG+ +S A +E +G+ I + R ++ + + D + L + Sbjct: 95 LARIGAAMPDWSVSAALETEDGVMQIGTGVPADSQTGRRIMRREGMTVSQAD-IATQLSV 153 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 SWL P MD +F RRRFLDR+V A D H R +E+LMR R L++EG D+ W Sbjct: 154 SWLTPQMDGVFIDSPGARRRFLDRLVIAFDAAHIGRTNRYEKLMRERTLLISEGRGDAGW 213 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 +++EA +AE + I AR +I+ L+ FP ++L L G ++ D+ Sbjct: 214 FNALEASLAETAIAITAARRALIHDLNEEARHGWH--GFPGVRLELQGDIENWLDEMPAL 271 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301 E+ + D S L GPH S+ + Y T A+ STG+QK +L+ + L Sbjct: 272 AVEDRHMAAAANLRTDGTS--ALPGPHASE-VNAYDVAGDTPAYLASTGQQKALLIAVVL 328 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHARL G PI+LLD+++AHLD +R+ALF + D+G Q + +G+D S+FD L + Sbjct: 329 AHARLQERRLGRPPIMLLDDVAAHLDAKRRSALFEALFDLGGQSWFSGSDASLFDGLGKA 388 Query: 362 AKFMRISN 369 A+FM+I + Sbjct: 389 AQFMKIHD 396 >gi|103487192|ref|YP_616753.1| recombination protein F [Sphingopyxis alaskensis RB2256] gi|98977269|gb|ABF53420.1| DNA replication and repair protein RecF [Sphingopyxis alaskensis RB2256] Length = 369 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 200/362 (55%), Gaps = 10/362 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++++FRN+A L GDNG GKTNILEAIS L+PGRG RRA +D+ R G+ Sbjct: 6 LSLTDFRNHAGADLAAAPGLVALHGDNGAGKTNILEAISLLAPGRGLRRAPLSDMVRDGA 65 Query: 70 PSFFSTFARVEGMEGLADISIK--LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F+ FA V EGL +++ +E R R ++IN L + L I WL P Sbjct: 66 HGGFAVFAEVAAAEGLPPVALGTGIEPAQPRR-RIVRINGAPA-AATALGEWLAILWLTP 123 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSI 186 +MDR+F + RRRFLDR+V A+DPRH + +E +R R +LL + D +W +S+ Sbjct: 124 AMDRLFVETAGNRRRFLDRLVLALDPRHAQHGNRYEAALRARGKLLADLAAADETWLTSL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 EAQ+AE G ++ AR++ + ALS+ E + + P + LT +D + + E Sbjct: 184 EAQLAEHGAAMDAARLDTLAALSA---ELAGQPDAPFARPLLT-LVDSEGAERSAPHSAE 239 Query: 247 YAKKLFDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 K LF R+ + GPHR DL+ + A STGEQK +L+ + LAH Sbjct: 240 ALKALFAARRRIDAAAGRATAGPHRDDLVAVHAVTGRAAARCSTGEQKAMLLSLVLAHGD 299 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 ++ G P+LLLDE++AHLD +R AL+ + G Q ++TGT+ ++FD++ Sbjct: 300 CVARRRGQRPVLLLDEVAAHLDPLRRAALYERLAGQGGQAWLTGTEAALFDAMPGPVTRY 359 Query: 366 RI 367 RI Sbjct: 360 RI 361 >gi|254462172|ref|ZP_05075588.1| DNA replication and repair protein RecF [Rhodobacterales bacterium HTCC2083] gi|206678761|gb|EDZ43248.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium HTCC2083] Length = 368 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 199/371 (53%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L +S FR++ R+ G NG GKTNILEA+S SPGRG RRAS D+ Sbjct: 2 LAITELTLSHFRSHKLARISCGPLPVAIYGPNGAGKTNILEAVSLFSPGRGMRRASAEDM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123 TR P +V G+ D + ++E ++ S R + N + + L + R+ Sbjct: 62 TR--RPEALGW--KVTGLLQTQDQTHEIEMWSENGSARSTKANSKPV-PQNRLAELSRVL 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL+P+MDR++ + RRRFLDRM + P H + +E+ MR RN+LL E D W Sbjct: 117 WLIPAMDRLWIEGAEGRRRFLDRMALSFFPNHAEASLTYEKTMRERNKLLKENVRDPMWY 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E ++AE G I+ RV + LS+ + K FP L LT D S L Sbjct: 177 GVLETRLAETGAVIHENRVRTLTFLSN--AQAQAKTPFPTADLELTHAEDAMPVDS-VDL 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K+ + F D + RTL+GPHR+DL + K + STGEQK +L+ + LA+ Sbjct: 234 KDAFEASRF----RDLAAGRTLVGPHRADLYGVFTAKGVPAKDCSTGEQKALLISLILAN 289 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 AR ++ G PILLLDE++AHLD +R AL+ ++ +G+Q +MTGT +FDSL+ + Sbjct: 290 ARALAGQIGAPPILLLDEVAAHLDATRRAALYAEISALGAQAWMTGTGAELFDSLSSQSV 349 Query: 364 FMRISNHQALC 374 + ++ + + Sbjct: 350 HLEVTENDGIS 360 >gi|312112798|ref|YP_004010394.1| DNA replication and repair protein RecF [Rhodomicrobium vannielii ATCC 17100] gi|311217927|gb|ADP69295.1| DNA replication and repair protein RecF [Rhodomicrobium vannielii ATCC 17100] Length = 400 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 217/386 (56%), Gaps = 22/386 (5%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 T+RI I L +++FRNY ++ LV + G NG GKTN LEA+S L+ GRG R + Sbjct: 4 TDRIAIAKLTLTDFRNYRAVTLVTGLGPVVLAGANGAGKTNCLEAVSLLTAGRGLRSLPF 63 Query: 62 ADVTRIGSPSFFSTFAR--VEGMEGLADISIKLETRD---DRSVRCLQINDVVIRVVDEL 116 ++ R G ++ A V G + I+L R+ R ++I+ + + L Sbjct: 64 PELARSGGSGGWAVAAELGVAGEDMHIGTGIQLPPDGMLTPRAARTVKIDHALAKGSGAL 123 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 + +R+ WL PSMD +F+G + ERRRFLDR+V ++DP + FER MR RN+ L E Sbjct: 124 VR-IRMLWLTPSMDGLFTGPAAERRRFLDRLVLSLDPGYGAAASAFERAMRQRNKALEE- 181 Query: 177 YFDSS-WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFL 232 FDS ++IEAQMA V + +AR I ALS I ++ FP L+L G L Sbjct: 182 -FDSPPMLTAIEAQMAAAAVAMAVARARAIAALSGEIEAERNRDPDSLFPWAALTLNGTL 240 Query: 233 DGKF-----DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 + + D L++ YA+ L GR D + RTL GPHRSDL V + KA+ Sbjct: 241 EEQAAALSEDTMRDELRDGYARALAQGRDRDRAAGRTLSGPHRSDLDVAHGPKAMPARMC 300 Query: 288 STGEQKVVLVGIFLAHARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 STGEQK +LVG+ LA ARLI G AP++LLDEI+AHLD +R ALF + + +Q++ Sbjct: 301 STGEQKALLVGLVLAQARLIKRAADGIAPLILLDEIAAHLDIGRREALFSSIVALNAQVW 360 Query: 347 MTGTDKSVFDSL---NETAKFMRISN 369 MTGTD + F L ET F+ +SN Sbjct: 361 MTGTDLATFTPLRNATETQLFV-VSN 385 >gi|83591343|ref|YP_425095.1| recombination protein F [Rhodospirillum rubrum ATCC 11170] gi|83574257|gb|ABC20808.1| RecF protein [Rhodospirillum rubrum ATCC 11170] Length = 375 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/379 (34%), Positives = 182/379 (48%), Gaps = 18/379 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L ++ FR Y LRL + + G NG GKTN+LEA+SFL+PGRG RRA+ AD R Sbjct: 2 VERLTLTAFRCYDRLRLDVGPRPLVLTGPNGAGKTNLLEALSFLAPGRGLRRAALADPCR 61 Query: 67 --------IGSPSFFSTFARVEGMEGL----ADISIKLETRDDRSVRCLQINDVVIRVVD 114 G P + R+ G D+ LE R ++I+ Sbjct: 62 RVGGDAATAGPPWAVAAHLRLPAGPGTLGRGVDVGTGLERATAGERRLVRIDGATAGQA- 120 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 L + WL P MD +F G + ERRRFLDR+V +DP H R + + R R RLL Sbjct: 121 ALGDLFSVLWLTPEMDGLFRGGASERRRFLDRLVNGLDPDHAGRTAAYAQAQRERARLLR 180 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 EG W +E MA GV I AR ++++ L + + FP ++ L +DG Sbjct: 181 EGRASRGWLDGLEDVMARHGVAIVAARRDLVDRLGAAVRAATGP--FPGARIDLVSEVDG 238 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 E+ + M GPHR DL V + K I STGEQK Sbjct: 239 WLAAGPALAAEDRLRAAL---AMARGPEAPAPGPHRDDLAVRHGPKDIPAVQASTGEQKA 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 VL+ + LA AR+ AP+LLLDE AHLD +R AL ++ G Q +++GT+ Sbjct: 296 VLIALILAQARVQEAARAVAPLLLLDEGVAHLDAPRRAALGEALSGQGLQAWVSGTEAQA 355 Query: 355 FDSLNETAKFMRISNHQAL 373 FDS + A+F+RI+ L Sbjct: 356 FDSWAKNAQFLRIAEGAVL 374 >gi|163745037|ref|ZP_02152397.1| recombination protein F [Oceanibulbus indolifex HEL-45] gi|161381855|gb|EDQ06264.1| recombination protein F [Oceanibulbus indolifex HEL-45] Length = 365 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/374 (35%), Positives = 200/374 (53%), Gaps = 20/374 (5%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 ++ + L++S FR++ + D + G NG GKTNI+EAIS LSPGRG RR S Sbjct: 2 TQLYLSNLSLSHFRSHRRAVIDVDVRPVALYGPNGAGKTNIIEAISLLSPGRGLRRTSAQ 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D+ R + + G L +I + E R + D L + R+ Sbjct: 62 DMARRPEALGWKMSGLLHGPSVLHEIEVWSEAGAARQTKI----DGKAAAQTALGRVARV 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL+P+MDR++ + RRRFLDR+ ++ P H + +E+ MR RNRLL + + +W Sbjct: 118 LWLIPAMDRLWIEGAEGRRRFLDRVTLSMLPDHAELSLSYEKAMRERNRLLKDMVREPAW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 +++EA+MAE G +I+ R++ + AL + E FP L L CA Sbjct: 178 YAALEARMAETGAQIHANRLQALAALEAAQEEAQTA--FPVATLELQ-----------CA 224 Query: 243 LK---EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + E + L D R D + RTLIGPHR+DL Y K + STGEQK +LV + Sbjct: 225 MPSDVEALRRALSDNRMRDLSAGRTLIGPHRADLEGTYAAKGVAARDCSTGEQKALLVSL 284 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA+AR I+ G P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F+SL Sbjct: 285 ILANARAIAADFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFESLG 344 Query: 360 ETAKFMRISNHQAL 373 + A+++ ++ L Sbjct: 345 DRAQYVEVTEEDGL 358 >gi|182680050|ref|YP_001834196.1| DNA replication and repair protein RecF [Beijerinckia indica subsp. indica ATCC 9039] gi|182635933|gb|ACB96707.1| DNA replication and repair protein RecF [Beijerinckia indica subsp. indica ATCC 9039] Length = 403 Score = 216 bits (549), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 196/364 (53%), Gaps = 3/364 (0%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +S+FR+Y +L L A+ + G+NG GKTN++EA+S +PGRG RR A R Sbjct: 15 VRRLILSDFRSYPALDLSLGAKMIVVTGENGAGKTNLIEALSLFTPGRGLRRVELASCAR 74 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125 P F+ +E + L R + R +I + HLRI WL Sbjct: 75 AEGPGGFAVSIEIETGAERVQLGTGLVPRSEGGFARQYRIERAPVGSARSFADHLRIVWL 134 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P+ D +F+ ERRRFLDR+V +D H R+ ER +R RNR L + Y DS W + Sbjct: 135 TPAQDGLFAASPGERRRFLDRLVLCVDAEHGARVTVLERALRNRNRQLEDHYADSRWLDA 194 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALK 244 E ++AE+ V + ARVE + L LI E FP L + G L+ + Sbjct: 195 TEKEIAEIAVAVAAARVETVARLRRLIDESRDTITPFPWADLEIRGDLERLVGERPALEA 254 Query: 245 EE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 EE Y L D R+ D+ + R L+GP SDL+V + K A STGEQK +LVG+ LAH Sbjct: 255 EELYRGILRDNRRRDAAAGRALVGPQNSDLLVRHGPKQADAARSSTGEQKALLVGLVLAH 314 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 ARL++ T AP++LLDEI+AH D +R AL+ + + QI+MTG + S F L + A Sbjct: 315 ARLVARATQTAPMILLDEIAAHFDASRRVALYEELAALPGQIWMTGAEASAFSGLADHAD 374 Query: 364 FMRI 367 +++ Sbjct: 375 LLQV 378 >gi|307295030|ref|ZP_07574872.1| DNA replication and repair protein RecF [Sphingobium chlorophenolicum L-1] gi|306879504|gb|EFN10722.1| DNA replication and repair protein RecF [Sphingobium chlorophenolicum L-1] Length = 354 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 144/365 (39%), Positives = 199/365 (54%), Gaps = 19/365 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +S+FRN+A +V D + GDNG GKTNILEA+S L+PGRG R A+ D+ R Sbjct: 2 IGRLTLSDFRNHADALIVPDHSFIVLTGDNGAGKTNILEAVSMLAPGRGLRGAALRDMAR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F A V+G + + D R VR ++ + L HL I WL Sbjct: 62 QDGTGGFGIAAEVDG--AMLGTGVLASAPDRRQVRIGGVSSSA----NALADHLSIVWLT 115 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185 P+MDR+F RRRFLDR+ A+ P H +E MR RNRLL + D SW S+ Sbjct: 116 PAMDRLFMDSPGGRRRFLDRLTLALHPAHAVHSARYEAAMRARNRLLGDLSAADPSWLSA 175 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +EAQM E G ++ AR +++ LS+ +E F L+L G D E Sbjct: 176 LEAQMDEHGAALSAARTDLVARLSA-ALEDQPDHPFARPLLALEGDSD-----------E 223 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 A +L R+ D+ + R+L GPHR DL V + KA A STGEQK +L+ I LAHA Sbjct: 224 PLALRLARERRRDAAAGRSLSGPHRRDLAVTHAAKAQAAALCSTGEQKALLLSILLAHAA 283 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L++ G P+LLLDE++AHLD +R ALF + + G Q++MTGT+ S+F+ L ++F Sbjct: 284 LVAAHRGQPPVLLLDEVAAHLDPSRRAALFDRLRETGGQVWMTGTEDSLFNELPVASRFS 343 Query: 366 RISNH 370 + H Sbjct: 344 VTAGH 348 >gi|296115231|ref|ZP_06833872.1| recombination protein F [Gluconacetobacter hansenii ATCC 23769] gi|295978332|gb|EFG85069.1| recombination protein F [Gluconacetobacter hansenii ATCC 23769] Length = 374 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 200/362 (55%), Gaps = 11/362 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +++FRNY L + T+ VG+NG GKTN+LE++S L PGRG R A AD+ R G Sbjct: 7 LVLTDFRNYRHLSWTPTSPVTVIVGENGSGKTNLLESVSLLLPGRGLRGARVADLPRHGG 66 Query: 70 PSFFSTFARVE---GME-GLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + AR++ G+E G+ D+++ + R DR R ++++ +R ++ L W Sbjct: 67 -TRWGIAARIDVPDGVEAGIRDLAVGSDPARPDR--RVVRLDGEALRNRTRVSDFLSAVW 123 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P MDR+F + RRRFLDR+V A++P H R + + M RNRLL G D +W S Sbjct: 124 LTPQMDRLFQEGAAGRRRFLDRLVLAMEPGHARELAAHDHAMMQRNRLLLSGGGDGAWLS 183 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFCAL 243 ++E MA GV AR ++ L+ + + FP L+L + A+ Sbjct: 184 ALEDAMARHGVAATAARAGLVALLNG--DDAALCDGFPATALTLESEIAQHLRHMPALAV 241 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ ++L R+ D +G HR+DL + A STG+QK +LVG+ L+H Sbjct: 242 EDWLREQLAASRQRDRARGSAFLGAHRTDLHMHDRATRRGAAQSSTGQQKAMLVGVVLSH 301 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 ARLI+ G AP++LLDE HLDE +RNALFR + + + + ++GTD + F L + A Sbjct: 302 ARLIARARGQAPLILLDEPLVHLDEVRRNALFRAIGRLDTTVMLSGTDAAQFGPLRDQAA 361 Query: 364 FM 365 F+ Sbjct: 362 FV 363 >gi|84514652|ref|ZP_01002016.1| recombination protein F [Loktanella vestfoldensis SKA53] gi|84511703|gb|EAQ08156.1| recombination protein F [Loktanella vestfoldensis SKA53] Length = 366 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 190/360 (52%), Gaps = 15/360 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S R++ L D + G NG GKTNILEA+S LSPGRG RRA D+ R Sbjct: 9 LTLSHLRSHKRAVLDLDPRPLAIFGPNGAGKTNILEAVSLLSPGRGLRRAGADDLARRPE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + ++ + + +I E R +R I+ V L + R+ WLVP+M Sbjct: 69 ALGWKITGVLQSLYQVHEIETWAEAGQPRQLR---IDGKTAPQV-ALGRIARVLWLVPAM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 DR+++ + RRRFLDR + +P H ++ +E+ MR RNRLL + D W ++IE Q Sbjct: 125 DRLWTEGADGRRRFLDRATLSFEPGHADVVLTYEKAMRERNRLLKDMVRDPHWYAAIEGQ 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA +I R + I + + + FP +L+LT + D L + Sbjct: 185 MAAAATQITANRTKAIA--ALMAAQAAAVSAFPTAQLTLT-YSD--------PLPTDLQS 233 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L D R D + RTL+GPHR+DL + DK + STGEQK +L+ + LA+AR ++ Sbjct: 234 ALADHRSRDMAAGRTLLGPHRADLDAVFADKHVPARDCSTGEQKALLISLILANARALAQ 293 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 G PILLLDE++AHLD +R AL+ + +G+Q FMTGT +F L A++ ++ Sbjct: 294 DFGAPPILLLDEVAAHLDATRRAALYDEICALGAQAFMTGTGPELFAELGSRAQYAEVTE 353 >gi|260428922|ref|ZP_05782899.1| DNA replication and repair protein RecF [Citreicella sp. SE45] gi|260419545|gb|EEX12798.1| DNA replication and repair protein RecF [Citreicella sp. SE45] Length = 368 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 123/353 (34%), Positives = 187/353 (52%), Gaps = 11/353 (3%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FR++ + DA+ G NG GKTN++EA+S LSPGRG RRA+ ++ R + Sbjct: 13 FRSHRRAEIAVDARPVAIYGPNGAGKTNLIEAVSLLSPGRGMRRAAAQEIARRPEALGWR 72 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A + +G+ +I I+ E R V D L + R+ WLVPSMDR++ Sbjct: 73 IGAELHAPDGVHEIDIRAEAGAARQVSI----DGKPAPQTALARITRVLWLVPSMDRLWI 128 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 RRRFLDRM + P H + +E+ MR RNRLL + D+ W +++E QMA+ G Sbjct: 129 EAPEGRRRFLDRMTLSFFPDHADASLTYEKAMRERNRLLKDQVRDAHWYAALEGQMAQAG 188 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 ++ + + A + E + + FP +L L + E L + Sbjct: 189 AQLQ-SNRQAALARLAQAQEGAETQ-FPAAELELV-----STEADIPETAEGLRAALSES 241 Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314 R D + RTLIGPHR+DL + K ++ + STGEQK +L+ + LA+AR ++ G Sbjct: 242 RFRDMAAGRTLIGPHRADLHGVFAAKGVSASDCSTGEQKALLISLILANARALAADLGAP 301 Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 PILLLDE++AHLD +R AL+ + +G+Q +MTGT +F L A+ + + Sbjct: 302 PILLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFGELGARAQRLEV 354 >gi|162147557|ref|YP_001602018.1| recombination protein F [Gluconacetobacter diazotrophicus PAl 5] gi|161786134|emb|CAP55716.1| putative DNA replication and repair protein recF [Gluconacetobacter diazotrophicus PAl 5] Length = 373 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 195/367 (53%), Gaps = 7/367 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +++FRNY L +A T+ G+NG GKTN+LEA+S L PGRG R A A++ Sbjct: 3 RLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAEMA 62 Query: 66 RIGSPSFFSTFARVEGMEGLA-DISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + + AR G +G DI+ + R +R R + + +R L HL Sbjct: 63 RHGT-TIWGVAARFTGPDGAPFDIATGSDPARPER--RVFRRDGETLRSRAALADHLSAV 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P MDR+F RRRFLDR+V A++P H R + ++ M RNRLL G D W Sbjct: 120 WLTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQAMGQRNRLLAAGRADPGWL 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCA 242 S++E MA V + AR+ ++ L+ V + FP +L L + D+ A Sbjct: 180 SALEDSMARHAVAASAARLALVTQLNGEAAHTV-PDGFPPARLDILCPIVQQLRDRPALA 238 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ +L GR DS IG HR+D+ + A STG+QK +L+G+ LA Sbjct: 239 VEDWLRGRLAAGRACDSARGGAGIGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLA 298 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L++ + G AP++LLDE HLDE +R ALFR V + + MTGTD F L A Sbjct: 299 HAALMTRSRGEAPMILLDEPLVHLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRA 358 Query: 363 KFMRISN 369 F+ N Sbjct: 359 GFVSPRN 365 >gi|254449439|ref|ZP_05062876.1| DNA replication and repair protein RecF [Octadecabacter antarcticus 238] gi|198263845|gb|EDY88115.1| DNA replication and repair protein RecF [Octadecabacter antarcticus 238] Length = 341 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 184/344 (53%), Gaps = 15/344 (4%) Query: 34 GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93 G NG GKTNILEA+S LSPGRG RRAS ++TR + A + + ++ E Sbjct: 5 GPNGAGKTNILEAVSILSPGRGLRRASSEEMTRRPEALGWKVTADLTSLNKRHEVEAWSE 64 Query: 94 TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153 R + D L + R+ WL+P+MDR++ + RRRFLDR + +P Sbjct: 65 NGASRQTKI----DGKAAAQTALGRIGRVLWLIPAMDRLWIEAAEGRRRFLDRATLSFEP 120 Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213 H + +E+ MR RNRLL + D+ W +++E QMA+ G +I+ R++ I+ L+ Sbjct: 121 MHADAALTYEKAMRERNRLLKDMVRDAHWYTALERQMADAGAQIHRNRMQAIDLLTD--A 178 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF---DGRKMDSMSRRTLIGPHR 270 + + FP L+LT C ++ A L R D + RTLIGPHR Sbjct: 179 QQAAQTAFPIALLTLT------HSDPVCDAPDDPAALLAALAGNRPRDMAAGRTLIGPHR 232 Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 +DL + K + STGEQK +L+ + LA+AR +++ G PILLLDE++AHLD + Sbjct: 233 ADLGAIFAAKDVPAKDCSTGEQKALLISLILANARALADDFGAPPILLLDEVAAHLDATR 292 Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374 R AL+ +T +G+Q FMTGT +F L A++ ++ + Sbjct: 293 RAALYSEITALGAQAFMTGTGPELFGELGTAAQYAYVTEENGVS 336 >gi|16124414|ref|NP_418978.1| recombination protein F [Caulobacter crescentus CB15] gi|221233097|ref|YP_002515533.1| recombination protein F [Caulobacter crescentus NA1000] gi|239977550|sp|B8GXP9|RECF_CAUCN RecName: Full=DNA replication and repair protein recF gi|239977551|sp|P0CAW1|RECF_CAUCR RecName: Full=DNA replication and repair protein recF gi|13421272|gb|AAK22146.1| recF protein [Caulobacter crescentus CB15] gi|220962269|gb|ACL93625.1| DNA replication and repair protein recF [Caulobacter crescentus NA1000] Length = 387 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 200/375 (53%), Gaps = 20/375 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT-RIG 68 L +++FR+Y RL + G NG GKTN+LEAIS LSPG+G R S A+V R+ Sbjct: 9 LTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGKGLRGVSLAEVGRRLP 68 Query: 69 SPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + +A ++ D +++ T + + R +++ + L H+R WL Sbjct: 69 GEAVGRAWAVAAEVQSGEDAPVRIGTGVEQGGAARRTVRLEGETV-PPGRLADHVRPIWL 127 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEGYFDS 180 P+ DR+F + ERRRF DR+VFA +P H +++ R R RLL T D+ Sbjct: 128 TPAQDRLFLEAASERRRFFDRLVFAGEPAHAANANGYDKAQRERMRLLVDAAETGAPADA 187 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-----FLDGK 235 +W +++EA++AE G + AR + AL + I + FP +L LTG L+G Sbjct: 188 AWLTALEARLAEFGALLAQARARTLLALQAEI-DGRGDRPFPLARLGLTGEWERMALEGA 246 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 F ++ + A+ L R D + R L GPHR DL + + +K A STGEQK + Sbjct: 247 ---PFAEIELKLAQALASARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQKAL 303 Query: 296 LVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 ++ + LA ARL + P++LLDE++AHLD +R AL +T + Q F+TGTD+S+ Sbjct: 304 ILNLVLAQAARLSRAESAPNPVILLDEVAAHLDLTRRAALADELTALKLQAFLTGTDESL 363 Query: 355 FDSLNETAKFMRISN 369 FD L A +R+ + Sbjct: 364 FDHLKGRALGVRVGD 378 >gi|295691339|ref|YP_003595032.1| DNA replication and repair protein RecF [Caulobacter segnis ATCC 21756] gi|295433242|gb|ADG12414.1| DNA replication and repair protein RecF [Caulobacter segnis ATCC 21756] Length = 387 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 204/375 (54%), Gaps = 20/375 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT-RIG 68 L +++FR+Y RL + G NG GKTN+LEAIS L+PG+G R A+ A+V R+ Sbjct: 9 LTLTDFRSYERARLETSGRSVYLFGPNGAGKTNLLEAISLLTPGKGLRGANLAEVGRRLP 68 Query: 69 SPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + +A +E D +++ T + S R ++++ + L H+R WL Sbjct: 69 GEATGRPWAVAAEVESGPDAPVRIGTGVEQGGASRRTVRLDGETV-SPGRLADHVRPIWL 127 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FDS 180 P+ DR+F + ERRRF DR+VFA +P+H +++ R R RLL E D+ Sbjct: 128 TPAQDRLFLEAASERRRFFDRLVFAGEPQHAANANAYDKAQRERMRLLIEAVERGAPPDA 187 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-----FLDGK 235 +W +++EA++AE G + AR + AL + I + FP +L+LTG L+G Sbjct: 188 TWLNALEARLAESGALMAQARARTLQALQAEI-DGRGDRPFPQARLTLTGDWEKLALEGV 246 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 F ++E+ A L R D + R L GPHR DL + + +K A STGEQK + Sbjct: 247 ---PFAEIEEKLAAALLSARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQKAL 303 Query: 296 LVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 ++ + LA ARL + P++LLDE++AHLD +R AL +T + Q F+TGTD+S+ Sbjct: 304 ILNLVLAQAARLSRAESAPNPVILLDEVAAHLDLARRAALADELTALKLQAFLTGTDESL 363 Query: 355 FDSLNETAKFMRISN 369 FD L A +R+ + Sbjct: 364 FDHLKGRALGVRVCD 378 >gi|15891955|ref|NP_359669.1| recombination protein F [Rickettsia conorii str. Malish 7] gi|20978615|sp|Q92JN5|RECF_RICCN RecName: Full=DNA replication and repair protein recF gi|15619066|gb|AAL02570.1| RecF protein [Rickettsia conorii str. Malish 7] Length = 360 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 120/358 (33%), Positives = 187/358 (52%), Gaps = 6/358 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LN+ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A A+V + Sbjct: 9 LNLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCKTSE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 A ++ GLA+ + + + +R R + N+ I +EL+K + WL P M Sbjct: 69 DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPHM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W IE + Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDRRDDNWLKIIEEK 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSFITA 242 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 T APILLLDE+ HLD+ +R L +T + Q+++T T+ D+ A+ +++ Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIDNFATKAQLIKL 360 >gi|157803214|ref|YP_001491763.1| recombination protein F [Rickettsia canadensis str. McKiel] gi|226737825|sp|A8EX95|RECF_RICCK RecName: Full=DNA replication and repair protein recF gi|157784477|gb|ABV72978.1| recombination protein F [Rickettsia canadensis str. McKiel] Length = 360 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 118/356 (33%), Positives = 187/356 (52%), Gaps = 6/356 (1%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A AD+ + S Sbjct: 11 LENYRNFKNLELKIDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICKT-SED 69 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 S A ++ GLA+ + + + +R R + N+ I +EL+K + WL P M+ Sbjct: 70 HCSIKALLQSKLGLAEFTTQFKLSSNR--RITEYNESKI-ANNELSKFTSMVWLTPQMEG 126 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191 IF+ +ERR+FLDR+V+ DP+H + +E M RN++L E D +W IE +MA Sbjct: 127 IFTSGKVERRKFLDRIVYNFDPKHAELVGKYEYYMHERNKILAEEIQDDNWLKIIEEKMA 186 Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251 ++ I + R++ + + I + FP LS+ G ++ K + +L Sbjct: 187 DISNHIAVNRLKTLEFMQQTINNL--ENEFPKADLSIDGIVEQKILDGEENIVSVITAEL 244 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 + R D + RT G H+SD +V + K I STGEQK +L+ I LA T Sbjct: 245 YKTRNKDKLIGRTSFGVHKSDFLVKHKKKNILAKLCSTGEQKAILIAIILAEMNYAIKLT 304 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 AP+LLLDE+ HLD+ +R+ L T + Q+++T T+ ++ A+ +++ Sbjct: 305 KIAPVLLLDEVFVHLDDKRRDYLTEFFTYLNLQLWITTTNLESIENFASKAQLIKL 360 >gi|294010882|ref|YP_003544342.1| DNA replication and repair protein RecF [Sphingobium japonicum UT26S] gi|292674212|dbj|BAI95730.1| DNA replication and repair protein RecF [Sphingobium japonicum UT26S] Length = 356 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 142/365 (38%), Positives = 199/365 (54%), Gaps = 17/365 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +S+FRN+A ++ D + GDNG GKTNILEA+S L+PGRG R A+ D+ R Sbjct: 2 IGRLTLSDFRNHADALIMPDHSFIVLTGDNGAGKTNILEAVSMLAPGRGLRGAALRDMAR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F A V+G+ + + D R VR V + L HL I WL Sbjct: 62 QDGAGGFGIAAEVDGV--MLGTGVLASAPDRRQVRI----GGVASSANALADHLSIVWLT 115 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185 P+MDR+F RRRFLDR+ A+ P H +E MR RNRLL + D SW S+ Sbjct: 116 PAMDRLFMDSPGGRRRFLDRLTLALHPAHAAHSARYEAAMRARNRLLNDLSAADPSWLSA 175 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +E QM E G + AR +++ L + +E F L++ G +G+ D E Sbjct: 176 LETQMDEHGAALAAARADLVGRLQA-ALEDQPDHPFARPLLAIEG--EGEGD-------E 225 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 +L R+ D+ + RTL GPHR DL V + KA A STGEQK +L+ I LAHA Sbjct: 226 PLGLRLARERRRDAAAGRTLSGPHRQDLAVVHAAKAQAAALCSTGEQKALLLSILLAHAA 285 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L++ G P+LLLDE++AHLD +R ALF + + GSQ++MTGT+ ++F+ L ++F Sbjct: 286 LVAAHRGQPPVLLLDEVAAHLDPSRRAALFDRLRETGSQVWMTGTESALFNGLPVASRFC 345 Query: 366 RISNH 370 + H Sbjct: 346 VTAGH 350 >gi|91204849|ref|YP_537204.1| recombination protein F [Rickettsia bellii RML369-C] gi|122426139|sp|Q1RKJ9|RECF_RICBR RecName: Full=DNA replication and repair protein recF gi|91068393|gb|ABE04115.1| DNA replication and repair protein RecF [Rickettsia bellii RML369-C] Length = 360 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 120/356 (33%), Positives = 189/356 (53%), Gaps = 6/356 (1%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +RN+ +L L D +G+NG GKTNILEAIS PGRG R A AD+ R S Sbjct: 11 VENYRNFKNLELKTDNIPITIIGENGSGKTNILEAISLFYPGRGLRSARLADICR-ESED 69 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 S A ++ GLA+ S +++ +R R + N+ I +EL+K + WL P M+ Sbjct: 70 HCSVRALLQSKLGLAEFSTQIKRISNR--RTTEYNNSKI-ANNELSKFTSMVWLTPQMEG 126 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191 IF+ + +RR+F DR+V+ DP+H + +E M+ RN++L E +D++W +IE +MA Sbjct: 127 IFTSGTSDRRKFFDRIVYNFDPKHAELVSKYEHYMQERNKILAEDMWDNNWLKTIEEKMA 186 Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251 + + I R++ + + I + + FP +LS+ G ++ K + A +L Sbjct: 187 DTSIYIANNRLKTLEFMQQAIDDL--ENEFPKAELSIDGMVEQKILNGEEDVVGFIAAEL 244 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 R D + RT G H+SD +V + K I STGEQK +L+ I LA T Sbjct: 245 HKTRDKDKLLGRTSFGVHKSDFLVKHKHKNILAKFCSTGEQKAILIAIILAEMNYAIKLT 304 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 APILLLDE+ HLD+ +RN L I Q+++T TD + ++ +++ Sbjct: 305 KTAPILLLDEVFVHLDDRRRNYLTEFFISINLQLWVTATDLKGIEEFGNKSQLIKL 360 >gi|157825165|ref|YP_001492885.1| recombination protein F [Rickettsia akari str. Hartford] gi|166221858|sp|A8GLV2|RECF_RICAH RecName: Full=DNA replication and repair protein recF gi|157799123|gb|ABV74377.1| recombination protein F [Rickettsia akari str. Hartford] Length = 360 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/358 (33%), Positives = 188/358 (52%), Gaps = 6/358 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A D+ + S Sbjct: 9 LSLANYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLDDICK-AS 67 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + A ++ GLA+ S ++ +R R + N+ I +EL+K + WL P M Sbjct: 68 EDYCIVKALLQSQLGLAEFSTHIKRNSNR--RITEYNESKI-ANNELSKFTSMVWLTPQM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ P+H + +E M RN++L E D +W IE + Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFYPKHAELVSKYEYYMHERNKILAEDIRDDNWLKIIEGK 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA++ I R++ + + I E + FP LS+ G ++ + L Sbjct: 185 MADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQRILDGEENLVNFITA 242 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA + Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYVIK 302 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 T APILLLDE+ HLD+ +R L T + Q+++T T+ ++ A+ +++ Sbjct: 303 LTKIAPILLLDEVFVHLDDTRRQYLIEFFTTLSMQLWVTDTNLEGIENFASKAQLIKL 360 >gi|34581007|ref|ZP_00142487.1| RecF protein [Rickettsia sibirica 246] gi|28262392|gb|EAA25896.1| RecF protein [Rickettsia sibirica 246] Length = 360 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/358 (33%), Positives = 187/358 (52%), Gaps = 6/358 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A A+V + Sbjct: 9 LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCKTSE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 A ++ GLA+ + + + +R R + N+ I +ELNK + WL P M Sbjct: 69 DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELNKFTSMVWLTPHM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W IE + Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSFITA 242 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 T APILLLDE+ HLD+ +R L +T + Q+++T T+ ++ A+ +++ Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFATKAQLIKL 360 >gi|157826419|ref|YP_001495483.1| recombination protein F [Rickettsia bellii OSU 85-389] gi|226737824|sp|A8GUF0|RECF_RICB8 RecName: Full=DNA replication and repair protein recF gi|157801723|gb|ABV78446.1| recombination protein F [Rickettsia bellii OSU 85-389] Length = 360 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/356 (33%), Positives = 188/356 (52%), Gaps = 6/356 (1%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +RN+ +L L D +G+NG GKTNILEAIS PGRG R A AD+ R S Sbjct: 11 VENYRNFKNLELKTDNIPITIIGENGSGKTNILEAISLFYPGRGLRSARLADICR-ESED 69 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 S A ++ GLA+ S +++ +R R + N+ I +EL+K + WL P M+ Sbjct: 70 HCSVRALLQSKLGLAEFSTQIKRISNR--RTTEYNNSKI-ANNELSKFTSMVWLTPQMEG 126 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191 IF + +RR+F DR+V+ DP+H + +E M+ RN++L E +D++W +IE +MA Sbjct: 127 IFMSGTSDRRKFFDRIVYNFDPKHAELVSKYEHYMQERNKILAEDMWDNNWLKTIEEKMA 186 Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251 + + I R++ + + I + + FP +LS+ G ++ K + A +L Sbjct: 187 DTSIYIANNRLKTLEFMQQAIDDL--ENEFPKAELSIDGMVEQKILNGEEDVVGFIAAEL 244 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 R D + RT G H+SD +V + K I STGEQK +L+ I LA T Sbjct: 245 HKTRDKDKLLGRTSFGVHKSDFLVKHKHKNILAKFCSTGEQKAILIAIILAEMNYAIKLT 304 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 APILLLDE+ HLD+ +RN L I Q+++T TD + ++ +++ Sbjct: 305 KTAPILLLDEVFVHLDDRRRNYLTEFFISINLQLWVTATDLKGIEEFGNKSQLIKL 360 >gi|97180901|sp|Q4UNG8|RECF_RICFE RecName: Full=DNA replication and repair protein recF Length = 364 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/358 (33%), Positives = 184/358 (51%), Gaps = 6/358 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A AD+ + Sbjct: 9 LTLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICKASE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 A ++ GLA+ + + + +R R + N+ I +EL+K + WL P M Sbjct: 69 DQCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPQM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ D +H + +E M RN++L E D +W IE + Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFDSKHAELVSKYEYYMYERNKILAEDIRDDNWLKIIEEK 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA++ I R++ + + I E + FP LS+ G ++ K + Sbjct: 185 MADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDGKENIVNFITA 242 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 T APILLLDE+ HLD+ +R L T + Q+++T TD ++ A+ +++ Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRGYLIEFFTGLNMQLWVTATDLEGIENFANKAQLIKL 360 >gi|67458427|ref|YP_246051.1| recombination protein F [Rickettsia felis URRWXCal2] gi|67003960|gb|AAY60886.1| DNA replication and repair protein RecF [Rickettsia felis URRWXCal2] Length = 420 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/358 (33%), Positives = 184/358 (51%), Gaps = 6/358 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A AD+ + Sbjct: 65 LTLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICKASE 124 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 A ++ GLA+ + + + +R R + N+ I +EL+K + WL P M Sbjct: 125 DQCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPQM 180 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ D +H + +E M RN++L E D +W IE + Sbjct: 181 EGIFTSGSSDRRKFLDRIVYNFDSKHAELVSKYEYYMYERNKILAEDIRDDNWLKIIEEK 240 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA++ I R++ + + I E + FP LS+ G ++ K + Sbjct: 241 MADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDGKENIVNFITA 298 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 299 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 358 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 T APILLLDE+ HLD+ +R L T + Q+++T TD ++ A+ +++ Sbjct: 359 LTKIAPILLLDEVFVHLDDKRRGYLIEFFTGLNMQLWVTATDLEGIENFANKAQLIKL 416 >gi|157964093|ref|YP_001498917.1| recombination protein F [Rickettsia massiliae MTU5] gi|166918725|sp|A8F0D4|RECF_RICM5 RecName: Full=DNA replication and repair protein recF gi|157843869|gb|ABV84370.1| DNA replication and repair protein RecF [Rickettsia massiliae MTU5] Length = 360 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 118/358 (32%), Positives = 186/358 (51%), Gaps = 6/358 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A AD+ + Sbjct: 9 LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICKTSE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 A ++ GLA+ + + + +R R + N+ I +EL+K + WL P M Sbjct: 69 DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPHM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W IE + Sbjct: 125 EGIFTSSSSDRRKFLDRIVYNFDPKHTELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 185 MADISNHIANNRLKTLEFMQHAIDDL--ENEFPKADLSIDGIVEQKILNGEENIVSFITA 242 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 243 ELYQTRNNDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 T APILLLDE+ HLD+ +R L T + Q+++T T+ ++ A+ +++ Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFFTGLNMQLWVTTTNLEGIENFATKAQLIKL 360 >gi|157827903|ref|YP_001494145.1| recombination protein F [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932591|ref|YP_001649380.1| recombination protein F [Rickettsia rickettsii str. Iowa] gi|166221859|sp|A8GQG2|RECF_RICRS RecName: Full=DNA replication and repair protein recF gi|189039635|sp|B0BVU8|RECF_RICRO RecName: Full=DNA replication and repair protein recF gi|157800384|gb|ABV75637.1| recombination protein F [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907678|gb|ABY71974.1| DNA replication and repair protein [Rickettsia rickettsii str. Iowa] Length = 360 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 118/358 (32%), Positives = 187/358 (52%), Gaps = 6/358 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A A+V + Sbjct: 9 LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCKTSE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 A ++ GLA+ + + + +R R + N+ I +EL+K + WL P M Sbjct: 69 DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPHM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W IE + Sbjct: 125 EGIFTSGSNDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKENIVSFITA 242 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 T APILLLDE+ HLD+ +R L +T + Q+++T T+ ++ A+ +++ Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFANKAQLIKL 360 >gi|114568557|ref|YP_755237.1| DNA replication and repair protein RecF [Maricaulis maris MCS10] gi|114339019|gb|ABI64299.1| DNA replication and repair protein RecF [Maricaulis maris MCS10] Length = 384 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 191/366 (52%), Gaps = 15/366 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-TRIG 68 L ++ FR+Y L L G+NG GKTN+LEAISFL+PGRG R A V TR G Sbjct: 17 LRLTNFRSYPDLDLELSPAPVALFGENGAGKTNLLEAISFLAPGRGMRSAGADGVATRSG 76 Query: 69 S--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + ++ FA + EG + + R R D + L + + + WL Sbjct: 77 ADIAPEWAVFAEADTREGGFRLGVGARGSARRETRI----DGEPAAQNALARLMPMIWLT 132 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P+ DR+F+G +R +F DR+V A DP H +E+ R RLL EG D SW +I Sbjct: 133 PAQDRLFAGPRADRLKFFDRLVHAADPAHADAASAYEKSRTRRQRLLDEGGQDPSWLGAI 192 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCALK 244 E +MA GV + AR ++AL L E Q+ FP L+L G ++ + A + Sbjct: 193 EVEMAGHGVAMAAAR---LDALIRLQGEIDQRPEGVFPQADLALDGAVEADLAEGLTAGE 249 Query: 245 EE--YAKKLFDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 E + L DGR+ D+ + RTL GPHR++L+ + K STGEQK +++ + L Sbjct: 250 AEDRFLAALRDGRRRDAAAGRTLTRGPHRTELLARHRAKDQPAGDCSTGEQKALILTLAL 309 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A AR + G AP+LLLDE AHLD +R+ L R + GSQ ++TG +K +F+ + Sbjct: 310 AQARALGQQWGVAPLLLLDEACAHLDALRRDGLAREILASGSQAWLTGVEKVLFEPFGDA 369 Query: 362 AKFMRI 367 ++ + Sbjct: 370 IQYREV 375 >gi|238650345|ref|YP_002916197.1| recombination protein F [Rickettsia peacockii str. Rustic] gi|259563671|sp|C4K0P8|RECF_RICPU RecName: Full=DNA replication and repair protein recF gi|238624443|gb|ACR47149.1| recombination protein F [Rickettsia peacockii str. Rustic] Length = 360 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 118/358 (32%), Positives = 187/358 (52%), Gaps = 6/358 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A A+V + Sbjct: 9 LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCKTSE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 A ++ GLA+ + + + +R R + N+ I +EL+K + WL P M Sbjct: 69 DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPHM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W IE + Sbjct: 125 EGIFTSGSNDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKENIVSFITA 242 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 T APILLLDE+ HLD+ +R L +T + Q+++T T+ ++ A+ +++ Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFATKAQLIKL 360 >gi|294675560|ref|YP_003576175.1| DNA replication and repair protein RecF [Rhodobacter capsulatus SB 1003] gi|294474380|gb|ADE83768.1| DNA replication and repair protein RecF [Rhodobacter capsulatus SB 1003] Length = 352 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 187/363 (51%), Gaps = 24/363 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++ L DA+ G NG GKT++LEA+S LSPGRG RRAS ++ R Sbjct: 2 LRDLTLLQFRSHRRAVLALDARPVALYGPNGAGKTSVLEAVSLLSPGRGLRRASAEELIR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + A L D ++ S L +V L + LR+ WLV Sbjct: 62 RQEQVGWKIRAT------LTDYEVETSALPGASREVLIDGKAAAQVA--LGRLLRVLWLV 113 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P+MDR++ + RRRFLDRM + P H ++ +E+ MR RNRLL + D++W ++ Sbjct: 114 PAMDRLWIEAAEGRRRFLDRMTLSFFPTHAEAVLAYEKAMRERNRLLKDEIRDAAWYGAL 173 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MAE G + R + + L++ + L+ G E+ Sbjct: 174 ETRMAEAGALMTAHRRQALAQLATAQAGAATAFPAADLGLTAEG-------------PED 220 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 A L +GR+ D + RTL GPHR DL Y +KAI STGEQK +L+ + LA+ Sbjct: 221 LATALAEGRRRDMAAGRTLEGPHRVDLTAVYAEKAIPADQCSTGEQKALLISLLLAN--- 277 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 G +LLLDE++AHLD +R AL+ + + +Q+ MTGT +FDSL E ++ + Sbjct: 278 ARALAGENTVLLLDEVAAHLDAGRRAALYDEICALPAQVLMTGTGAELFDSLGERGRYWQ 337 Query: 367 ISN 369 ++ Sbjct: 338 VTE 340 >gi|85710419|ref|ZP_01041483.1| recombinational DNA repair ATPase [Erythrobacter sp. NAP1] gi|85687597|gb|EAQ27602.1| recombinational DNA repair ATPase [Erythrobacter sp. NAP1] Length = 362 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 191/373 (51%), Gaps = 25/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + FRN+A L A + VG+NG GKTN+LEAIS LSPGRG RRA+ D+ Sbjct: 1 MALAKITLQNFRNHARSELAETAHFNLLVGENGAGKTNVLEAISLLSPGRGLRRANLTDL 60 Query: 65 TRIGS----PSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCL-QIN--DVVIRVVDEL 116 R P F+ A +E +G I T +R R L +IN D + E Sbjct: 61 ARKAPGDAQPGAFAIGASLIE--QGQVSARIGTYTEAERPTRRLVRINGADASASALSEW 118 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 + +SWL P+MD +F+ + RRRF+DRM AI+P H + + E +R RNRLL E Sbjct: 119 HA---VSWLTPAMDGLFTDSAGARRRFVDRMALAIEPGHAKAVNQLEIALRERNRLLEE- 174 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + D+ W +IEAQ A+ G + R +I LS + + + P + LT G Sbjct: 175 HGDARWLDAIEAQAAQHGSVVAANRSRLIAMLSDELSAFPPE---PFARPILTYRPGGPL 231 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 EE + R D + R L GPHR +L V A STGEQK +L Sbjct: 232 ------APEELLAEFARARPRDRAAGRALTGPHRDELEVVMMGTGQPAASSSTGEQKAML 285 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + I LAH L S +G +LLLDE++AHLD +R ALF + +Q++MTGT+ + F Sbjct: 286 IAITLAHGVLAS--SGRPSVLLLDEVAAHLDPVRRKALFDRLRAGKAQVWMTGTELAPFA 343 Query: 357 SLNETAKFMRISN 369 + E A R+S Sbjct: 344 EIEEEAAVWRVSG 356 >gi|1049325|gb|AAB51449.1| RecF [Caulobacter crescentus CB15] Length = 388 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 195/373 (52%), Gaps = 15/373 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT-RIG 68 L +++FR+Y RL + G NG GKTN+LEAIS LSPG+G R S A+V R+ Sbjct: 9 LTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGKGLRGVSLAEVGRRLP 68 Query: 69 SPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + +A ++ D +++ T + + R +++ + L H+R WL Sbjct: 69 GEAVGRAWAVAAEVQSGEDAPVRIGTGVEQGGAARRTVRLEGETV-PPGRLADHVRPIWL 127 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR------GRNRLLTEGYFD 179 P+ DR+F + ERRRF DR+VFA +P H +++ R R R D Sbjct: 128 TPAQDRLFLEAASERRRFFDRLVFAGEPAHAANANGYDKAQRRAYAPACRRRRNGRAPAD 187 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFD 237 ++W +++EA++AE G + AR + AL + I + FP +L LTG + Sbjct: 188 AAWLTALEARLAEFGALLAQARARTLLALQAEI-DGRGDRPFPLARLGLTGEWERMAVEG 246 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 F ++ + A+ L R D + R L GPHR DL + + +K A STGEQK +++ Sbjct: 247 APFAEIELKLAQALASARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQKALIL 306 Query: 298 GIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + LA ARL + P++LLDE++AHLD +R AL +T + Q F+TGTD+S+FD Sbjct: 307 NLVLAQAARLSRAESAPNPVILLDEVAAHLDLTRRAALADELTALKLQAFLTGTDESLFD 366 Query: 357 SLNETAKFMRISN 369 L A +R+ + Sbjct: 367 HLKGRALGVRVGD 379 >gi|229586258|ref|YP_002844759.1| recombination protein F [Rickettsia africae ESF-5] gi|259563670|sp|C3PM56|RECF_RICAE RecName: Full=DNA replication and repair protein recF gi|228021308|gb|ACP53016.1| DNA replication and repair protein RecF [Rickettsia africae ESF-5] Length = 360 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 117/358 (32%), Positives = 186/358 (51%), Gaps = 6/358 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A A+V + Sbjct: 9 LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCKTSE 68 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 A ++ GLA+ + + + +R R + N+ I +EL+K + WL P M Sbjct: 69 DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPHM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W IE + Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSFITA 242 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 T APILLLDE+ HLD+ +R L + + Q+++T T+ ++ A+ +++ Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFLIGLNMQLWVTTTNLEGIENFATKAQLIKL 360 >gi|51473311|ref|YP_067068.1| recombination protein F [Rickettsia typhi str. Wilmington] gi|81692324|sp|Q68XQ6|RECF_RICTY RecName: Full=DNA replication and repair protein recF gi|51459623|gb|AAU03586.1| DNA replication and repair protein RecF [Rickettsia typhi str. Wilmington] Length = 360 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 123/362 (33%), Positives = 187/362 (51%), Gaps = 14/362 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LN+ +RN+ +L L D I G+NG GKTNILEAIS PGRG R + D+ + S Sbjct: 9 LNLENYRNFKNLELKIDNIPIILTGENGSGKTNILEAISLFYPGRGLRSSKLTDICK-TS 67 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + A ++ G+AD S ++ +R R + N I +EL+K + WL P M Sbjct: 68 EDYCRVKALLQSKLGIADFSTHIKRNSNR--RITEYNASKI-ANNELSKFTSMVWLTPQM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ D +H + +E M RN++L E D++W IE Sbjct: 125 EGIFTSSSTDRRKFLDRIVYNFDTKHAELLNKYEYYMHERNKILAEDIRDNNWLKIIEEN 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA + I R++ I + I E ++ E FP LS+ DG +Q ++E+ Sbjct: 185 MANISNIIANNRLKTIRFMQQAIDE-IENE-FPKADLSI----DGIIEQKILNVEEDIVS 238 Query: 250 ----KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 239 FIITELYQTRSKDKLLGRTSFGIHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMN 298 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 T PILLLDEI HLD+ +R L T + Q+++T T+ ++ A+ + Sbjct: 299 STIKLTKITPILLLDEIFVHLDDKRRQYLMDFFTALNIQLWVTATNLDGIENFANKAQLI 358 Query: 366 RI 367 ++ Sbjct: 359 KL 360 >gi|209542191|ref|YP_002274420.1| recombination protein F [Gluconacetobacter diazotrophicus PAl 5] gi|209529868|gb|ACI49805.1| DNA replication and repair protein RecF [Gluconacetobacter diazotrophicus PAl 5] Length = 373 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 194/367 (52%), Gaps = 7/367 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +++FRNY L +A T+ G+NG GKTN+LEA+S L PGRG R A A++ Sbjct: 3 RLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAEMA 62 Query: 66 RIGSPSFFSTFARVEGMEGLA-DISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + + AR G +G DI+ + R +R R + + +R L HL Sbjct: 63 RHGT-TIWGVAARFTGPDGAPFDIATGSDPARPER--RVFRRDGETLRSRAALADHLSAV 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P MDR+F RRRFLDR+V A++P H R + ++ M RNRLL G D W Sbjct: 120 WLTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQAMGQRNRLLAAGRADPGWL 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCA 242 S++E MA V + AR+ ++ L+ V + FP +L L + D+ A Sbjct: 180 SALEDSMARHAVAASAARLALVTQLNGEAAHTV-PDGFPPARLDILCPIVQQLRDRPALA 238 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ +L GR D +G HR+D+ + A STG+QK +L+G+ LA Sbjct: 239 VEDWLRGRLAAGRAADGARGGAGMGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLA 298 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L++ + G AP++LLDE HLDE +R ALFR V + + MTGTD F L A Sbjct: 299 HAALMTRSRGEAPMILLDEPLVHLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRA 358 Query: 363 KFMRISN 369 F+ N Sbjct: 359 GFVSPRN 365 >gi|167644130|ref|YP_001681793.1| recombination protein F [Caulobacter sp. K31] gi|259563357|sp|B0T360|RECF_CAUSK RecName: Full=DNA replication and repair protein recF gi|167346560|gb|ABZ69295.1| SMC domain protein [Caulobacter sp. K31] Length = 392 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 190/383 (49%), Gaps = 17/383 (4%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R + L +++FR+Y L D G NG GKTN+LEAIS LSPG+G R +S Sbjct: 2 SRAALLSLTLTDFRSYERATLRPDGASVYLFGANGAGKTNLLEAISLLSPGKGLRGSSLI 61 Query: 63 DVTR--IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE----- 115 +V R G + + E D R V ++R+ E Sbjct: 62 EVGRRLPGEATGRAWAVAAETEAPQTDFGQDEPVRLGTGVELAGAARRIVRIDGETVPPG 121 Query: 116 -LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 L H+R WL P+ DR+F + ERRRF DR+VFA +P H +++ R R RLLT Sbjct: 122 RLADHVRPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPAHAGHANAYDKAQRERMRLLT 181 Query: 175 EGY-----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 + D+ W +++EA++ G + AR + AL + I + FP +L+LT Sbjct: 182 DAAESGQPADAVWLTALEARLGAAGALMANARARTLMALQAEI-DSRGDRPFPRARLALT 240 Query: 230 GFLD--GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 G + ++ A L R D + R L GPHR DL + + DK A Sbjct: 241 GEWEKLALVGVEIAEIEARLAAALAAARPRDGAAGRALTGPHRGDLAIHHVDKDRPAAEC 300 Query: 288 STGEQKVVLVGIFLAHA-RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 STGEQK +++ + LA A RL PILLLDE++AHLD +R AL +T +G Q F Sbjct: 301 STGEQKALILNLVLAQAARLSRAKDAPNPILLLDEVAAHLDLKRRAALADEITALGLQAF 360 Query: 347 MTGTDKSVFDSLNETAKFMRISN 369 +TGTD+S+FD L A +R+S Sbjct: 361 LTGTDQSLFDHLKGRALGVRVSE 383 >gi|239948452|ref|ZP_04700205.1| DNA replication and repair protein RecF [Rickettsia endosymbiont of Ixodes scapularis] gi|239922728|gb|EER22752.1| DNA replication and repair protein RecF [Rickettsia endosymbiont of Ixodes scapularis] Length = 360 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 179/342 (52%), Gaps = 6/342 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG + A A + + S Sbjct: 9 LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLKSAKLAYICKT-S 67 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + A ++ GLA+ + + + +R R + N+ I +EL+K + WL M Sbjct: 68 EDHCTVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTSQM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W IE + Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILAEDIRDDNWLKIIEEK 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA++ I R++ + + I E + FP LS+ G ++ K + Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDGEENIVSFITA 242 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 T APILLLDE+ HLD+ +R L T + Q+++T TD Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFFTCLNMQLWVTATD 344 >gi|254419522|ref|ZP_05033246.1| RecF/RecN/SMC N terminal domain, putative [Brevundimonas sp. BAL3] gi|196185699|gb|EDX80675.1| RecF/RecN/SMC N terminal domain, putative [Brevundimonas sp. BAL3] Length = 377 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 133/382 (34%), Positives = 201/382 (52%), Gaps = 31/382 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +++FR+YAS RL + + G NG GKTN+LEAIS L+PG+G R A+ A++ R Sbjct: 2 ITSLTLTDFRSYASARLELASGPVVLHGPNGAGKTNLLEAISLLTPGKGLRGATAAEMGR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK------HL 120 G + + ETR V+ ++R+ E + +L Sbjct: 62 -------REPGEAVGRAWAVMVELDDETRLGTGVQTAGAARRIVRIDGETAQPGRLLDYL 114 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--- 177 R W P DR+FS ER +F DR+VFA DP H + +E+ +R R RLL + Sbjct: 115 RPVWATPEQDRLFSDARAERLKFFDRLVFAADPDHAAAVSAYEKALRERLRLLNDAQDGR 174 Query: 178 -FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--- 233 D W ++EA++ E G + +ARV ++AL + I + + FP L L G + Sbjct: 175 EADPVWLDALEARLGEAGARAALARVAALHALQAAI-DARRDRPFPQADLGLDGPAEQMA 233 Query: 234 ---GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + D+ A++E AK R D + R+L GPHR+DL + +K A GS+G Sbjct: 234 EAGAEEDEIAAAIREGLAK----ARARDGAAGRSLFGPHRTDLTALHREKNRPAAEGSSG 289 Query: 291 EQKVVLVGIFLAH-ARLISNTTGFA--PILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 EQK +++ + LA +RL + A P+LLLDE AHLDE +R ALF + + Q FM Sbjct: 290 EQKALVLNLILAQISRLAHHDAAGAARPVLLLDEAPAHLDEARRAALFDEIVALDLQAFM 349 Query: 348 TGTDKSVFDSLNETAKFMRISN 369 TGT++S+F L+ A+F+R++ Sbjct: 350 TGTERSLFAGLDGRAQFVRVAG 371 >gi|330994266|ref|ZP_08318194.1| DNA replication and repair protein recF [Gluconacetobacter sp. SXCC-1] gi|329758733|gb|EGG75249.1| DNA replication and repair protein recF [Gluconacetobacter sp. SXCC-1] Length = 374 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/363 (33%), Positives = 193/363 (53%), Gaps = 7/363 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +++FRNY L T+ G NG GKTN+LEA+S L+PGRG R A ++ R Sbjct: 4 VNRLVLTDFRNYRHLSWRPQRAVTVITGPNGSGKTNLLEALSLLAPGRGLRGARMDELPR 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVVIRVVDELNKHLRIS 123 G + + A V + G + + L T D R +++ +R D ++ + Sbjct: 64 HGE-ALWGIAADVADLPGPDGLPVSLATGADPLRPERRTFRVDGQTLRNRDGISGYFAAV 122 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P MDR+F + RRRFLDR+V A++P H R + +R M R R+L + D W Sbjct: 123 WLTPQMDRLFQEGAAGRRRFLDRLVLALEPGHAREVAAHDRAMLQRGRVLAQYGADPHWL 182 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242 +++E MA V AR +M+ L++ + + FP +L+L + + + A Sbjct: 183 AALERTMARHAVAATAARADMVARLNADGQALL--DGFPAARLALDCVIARRLAHEPALA 240 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ A+ L R +D + G HR+DL + STG+QK +LVGI L+ Sbjct: 241 VEDWLAECLAGTRAVDRQRGGSRFGAHRADLHMADRLTDRPAGQSSTGQQKALLVGIILS 300 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HAR+++ G AP+LLLDE HLD +R+ALF + + + + +TGTD+ FD L ++A Sbjct: 301 HARILTACRGQAPLLLLDEPLVHLDAARRDALFHAMGRMRTGVMLTGTDREQFDPLRQSA 360 Query: 363 KFM 365 +F+ Sbjct: 361 EFV 363 >gi|300021543|ref|YP_003754154.1| SMC domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523364|gb|ADJ21833.1| SMC domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 455 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/337 (37%), Positives = 184/337 (54%), Gaps = 17/337 (5%) Query: 47 ISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK----------LETRD 96 +S S GRG +D +R+ +P+ + G +D S+ E Sbjct: 111 LSSPSTGRGQDPGGVSDRSRVDTPAPNPSPQGGGEPFGFSDESLARNAQRGGGRAAERAP 170 Query: 97 DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 R ++I+ L +L I W+ P+MD +F+G ERRRFLDR++ D +R Sbjct: 171 SERGRIVRIDGTAQSGSGVLADYLEIVWVTPAMDGLFTGPGSERRRFLDRLILCFDHGYR 230 Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216 FER M RNRLL +G D S S E MAE GV + AR+E + A++ ++ + Sbjct: 231 TIAGRFERAMTSRNRLLADGVRDDSQLSGFERVMAETGVAVAAARLEAVAAMAQIVGKRR 290 Query: 217 QKEN---FPHIKLSLTGFLDGKFDQSFCALKEE--YAKKLFDGRKMDSMSRRTLIGPHRS 271 +++ FP L G ++ Q A++ E YA+ L R+ D + RTL GPHRS Sbjct: 291 ERDPNSAFPWSSFRLEGSIEDSL-QRLSAVEAEDLYAQTLRQTRERDRAASRTLDGPHRS 349 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN-TTGFAPILLLDEISAHLDEDK 330 DLIV++ K + H STGEQK +L+G+ LAHA L++ G APILLLDEI+AHLD D+ Sbjct: 350 DLIVEHGPKGLAARHCSTGEQKALLLGLVLAHAELLTERQEGAAPILLLDEITAHLDADR 409 Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 R ALF + +G+Q +MTGTDK+ F++L A+F + Sbjct: 410 RAALFDEILHLGAQAWMTGTDKNAFEALAGRARFWAV 446 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 3/106 (2%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +N + ++ L ++ FR+YA+ + DA + VG NG GKTN+LEA+S LSPG+G RR + Sbjct: 6 SNALWVERLQLTNFRSYAAANVATDAGPQVIVGANGSGKTNLLEALSLLSPGQGLRRVPF 65 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 +D+ R G F+ AR + G DI L +VR L +D Sbjct: 66 SDLVRSGGDGGFAVAARAHTLAGATDIGTGLRA---TTVRSLSGDD 108 >gi|302381120|ref|YP_003816943.1| SMC domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302191748|gb|ADK99319.1| SMC domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 381 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 193/383 (50%), Gaps = 29/383 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L +++FR+YA+ L + + G NG GKTN+LEA+S +PG+G R A+ ++ R Sbjct: 2 IRALTLTDFRSYAAATLSVETGPVVLHGPNGAGKTNLLEALSLFTPGKGLRAATAQEMGR 61 Query: 67 -----IGSPSFFS--TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 G ++ T A +G + +++ R VR R++D + Sbjct: 62 REPGETGGRAWAVALTLAGPDGDDVRLGTGVQVAGAGRRMVRIEGETAQPGRLLD----Y 117 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-- 177 LR W P DR+FS ER +F DR+VFA DP H + +E+ +R R RLL +G Sbjct: 118 LRPVWATPEQDRLFSDARAERLKFFDRLVFAADPGHAAAVAGYEKALRERLRLLVDGAEG 177 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-- 233 D W ++E ++ E G + AR + L + I ++ FP L L G + Sbjct: 178 READPLWLDALEVRLGETGARAASARARALGVLQAAIDARAERP-FPQADLGLDGAAETA 236 Query: 234 ---GKFDQSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 G D++ A ++E A+ R D + R+L GPHR+DL + +K A GS+ Sbjct: 237 AANGSDDEAIAAGIREGMARS----RARDGAAGRSLFGPHRTDLTALHREKNRPAAEGSS 292 Query: 290 GEQKVVLVGIFLAHARLISNTTG---FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 GEQK +++ + LA + T G P+LLLDE AHLD +R ALF + + Q F Sbjct: 293 GEQKALVLNLILAQIGRLKATGGPTPAPPVLLLDEAPAHLDAGRRAALFDEIVALDLQAF 352 Query: 347 MTGTDKSVFDSLNETAKFMRISN 369 MTGT+ +F+ L A F+R+ Sbjct: 353 MTGTEADLFEPLRGRAAFVRVEG 375 >gi|7019618|gb|AAB70169.2| RecF [Sinorhizobium meliloti] Length = 176 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 85/167 (50%), Positives = 117/167 (70%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +S+FRNYA+L L D +H + G+NG GKTN++E +SFLSPGRG RRA+ Sbjct: 1 MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+G+P FS FA V+GMEG +I + ++ R L+IN R VDEL HL Sbjct: 61 YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR +F+R MR Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMR 167 >gi|114326984|ref|YP_744141.1| recombination protein F [Granulibacter bethesdensis CGDNIH1] gi|114315158|gb|ABI61218.1| DNA replication and repair protein recF [Granulibacter bethesdensis CGDNIH1] Length = 373 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 184/354 (51%), Gaps = 7/354 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ FRNYA+L VG NG GKTN+LEAIS LSPGRG R A + R Sbjct: 8 IRTLTLTRFRNYAALAWSPPPGLVGVVGPNGSGKTNLLEAISLLSPGRGLRNARTDQLAR 67 Query: 67 IG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G ++ AR+ G +++ + +R R ++I+ +IR EL H+ W Sbjct: 68 QGEGGDGSWAVHARILSPTGPVELATGVLPGTER--RQVRIDGDIIRGQAELGAHITTVW 125 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P MDR+F RRRFLDR+V+ ++P H R + + R RLL D +W + Sbjct: 126 LTPQMDRLFQEGPAGRRRFLDRLVYGLEPAHAREVAAQAASLTERARLLAM-RADPAWLA 184 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E +A + +R+ + L+ ++++ FP +L L + + + Sbjct: 185 AVEDSIARHATAVTASRLAYVTRLNDVLVQG-GAGGFPPARLDLNCAIATRLSRHPAVEV 243 Query: 245 EEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E++ + L D R+ D S IG HRSDL++ + + STG+QK +L+G+ L H Sbjct: 244 EDWLRAALRDSRETDGESGTQGIGAHRSDLLMKDAATGRSASIASTGQQKALLIGVTLGH 303 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 A L+ G AP++LLDE HLD ++R L + +G Q F+T TD+ FD+ Sbjct: 304 AVLLKAVRGRAPVMLLDEPMTHLDAERRRLLLTALRGLGGQGFLTATDRDAFDA 357 >gi|83944866|ref|ZP_00957232.1| recF protein [Oceanicaulis alexandrii HTCC2633] gi|83851648|gb|EAP89503.1| recF protein [Oceanicaulis alexandrii HTCC2633] Length = 388 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 127/381 (33%), Positives = 196/381 (51%), Gaps = 14/381 (3%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 T + L ++ FRNYA L L DA+ G+NG GKTN++EA+SFL PGRG R A+ Sbjct: 8 TGGPAVTRLKLTGFRNYARLDLALDARPVALFGENGAGKTNLVEAVSFLGPGRGLR-AAG 66 Query: 62 ADVTR----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 AD R G ++ +A EG ++ + ++ R D EL Sbjct: 67 ADAVRRRTDQGVDPLWAVYAEAMTPEGPVSLATGADPQN--PTRRRTKLDGAAATQTELA 124 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-- 175 + + + WL P DR+++G +R RF DR+V A P H +E+ M+ R RLL Sbjct: 125 RLIPMLWLTPREDRLWAGPRADRLRFFDRLVLAAAPDHASSASAYEKSMKERQRLLDRVA 184 Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 G D W +++EA+MA GV + AR++ + L I + + FP L+L G ++ Sbjct: 185 EGGRADPDWLNALEAEMAASGVALAAARLDALARLQDEI-DTRPESQFPKADLALDGAVE 243 Query: 234 GKFDQSFCALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 K + A + E +A +L R D + R L GPHR++L + K+ + STGE Sbjct: 244 AKLAEGLKAGEAEDWFADELQRVRPRDGAAGRALTGPHRTELDARHRAKSQPASDCSTGE 303 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 QK +++G+ LA A I +G P+L+ DE AHLD +R+ L V D+G Q FMTG + Sbjct: 304 QKSMVLGLALAQAAAIRRLSGRGPVLIFDEACAHLDAARRDGLAETVLDLGVQAFMTGVE 363 Query: 352 KSVFDSLNETAKFMRISNHQA 372 +F++ A+ + + + A Sbjct: 364 PVLFEAFGTGAQRVEVRDGSA 384 >gi|315497054|ref|YP_004085858.1| DNA replication and repair protein recf [Asticcacaulis excentricus CB 48] gi|315415066|gb|ADU11707.1| DNA replication and repair protein RecF [Asticcacaulis excentricus CB 48] Length = 374 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 201/376 (53%), Gaps = 17/376 (4%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + +I L++++FR+Y L + + G NG GKTN LEAIS L+PGRG R A+ +D Sbjct: 2 KTRIHALSLTDFRSYDRLDVDLSGRSLYLFGPNGAGKTNFLEAISVLNPGRGLRGAAVSD 61 Query: 64 VTR--IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDELNKH 119 + R + VE DI I + D RS+ R ++I+ + L H Sbjct: 62 LGRRLPQEAKGRAWGVSVELKSAEDDIRIGTGS-DPRSLEKRLVRIDQQTV-PAGRLLDH 119 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 +R+ WL P+ DRIF ER RF DR+VFA P H + +E+ +R R +LL +G D Sbjct: 120 IRLVWLTPAQDRIFLEARAERLRFFDRLVFAATPSHATTVSAYEKALRERLKLLVQGPAD 179 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFL-DGKFD 237 + W ++E ++AE G ++ AR ALS L E E+ FP L L D + Sbjct: 180 AVWLDALEERLAEAGSEMIGARR---AALSDLQAEIEAHESAFPKADLGLINEASDARER 236 Query: 238 QSF-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ AL+E +A+ DS + R+L GPHR+DL V + +K A STGEQK ++ Sbjct: 237 ETLNTALREGFARAR----ARDSAAGRSLFGPHRTDLSVFHREKDRPAADCSTGEQKALV 292 Query: 297 VGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + + LA +RL + P++LLDE++AHLD +R ALF +G Q TGTD+S+F Sbjct: 293 LNLILAQGSRLSRVKSAPNPVVLLDEVAAHLDPIRRAALFDETDRLGLQTLFTGTDESLF 352 Query: 356 DSLNETAKFMRISNHQ 371 D L A +R+ Q Sbjct: 353 DGLAGRALGVRVEGGQ 368 >gi|326402805|ref|YP_004282886.1| DNA replication and repair protein RecF [Acidiphilium multivorum AIU301] gi|325049666|dbj|BAJ80004.1| DNA replication and repair protein RecF [Acidiphilium multivorum AIU301] Length = 379 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 117/362 (32%), Positives = 186/362 (51%), Gaps = 8/362 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ L +++FR+YA L G NG GKTN+LEA+S L+PGRG R A A++ Sbjct: 14 LRIESLRLTDFRSYARLDWQPGGMVVALAGPNGAGKTNLLEAVSLLAPGRGLRGARLAEL 73 Query: 65 TR--IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G+ ++ AR++G EG I +E R L D + Sbjct: 74 ARRAPGASGGWAVAARIDGPEGRFAIGTGIEAGQGERRRLLL--DGEPAAAARVAARFSC 131 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P MDR+F+ + RRRFLDR+V A++P H + FE RNRL+ G +D W Sbjct: 132 LWLTPQMDRLFTEGASARRRFLDRLVLALEPGHASEVAAFEAASANRNRLIEAGGYDPLW 191 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++IE MA + AR+ +I + ++ + FP +LSL + + Sbjct: 192 LATIEDSMARHAAALTAARLHVIE-RLNALLAAGAADPFPAARLSLDCPIGAELAHRPAL 250 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EE+ + + + + ++ + P R+DL +++ + A STG+Q+ +LV I LA Sbjct: 251 AVEEWLRGRYAATRAEPVA---ALSPQRADLGLEHASSGLAAALASTGQQRAMLVAIVLA 307 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L++ + G AP+LLLDE HLD R+AL + G+Q+F T T++ +L + A Sbjct: 308 HAALVAISRGAAPVLLLDEPFVHLDAAHRSALGEALHRGGAQVFCTATERDQLAALGDAA 367 Query: 363 KF 364 + Sbjct: 368 IW 369 >gi|148259598|ref|YP_001233725.1| recombination protein F [Acidiphilium cryptum JF-5] gi|146401279|gb|ABQ29806.1| SMC domain protein [Acidiphilium cryptum JF-5] Length = 379 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 117/362 (32%), Positives = 186/362 (51%), Gaps = 8/362 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ L +++FR+YA L G NG GKTN+LEA+S L+PGRG R A A++ Sbjct: 14 LRIESLRLTDFRSYARLDWQPGGMVVALAGPNGAGKTNLLEAVSLLAPGRGLRGARLAEL 73 Query: 65 TR--IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G+ ++ AR++G EG I +E R L D + Sbjct: 74 ARRAPGASGGWAVAARIDGPEGRFAIGTGIEAGQGERRRLLL--DGEPAAAARVAARFSC 131 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P MDR+F+ + RRRFLDR+V A++P H + FE RNRL+ G +D W Sbjct: 132 LWLTPQMDRLFTEGASARRRFLDRLVLALEPGHASEVAAFEAASANRNRLIEAGGYDPLW 191 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++IE MA + AR+ +I + ++ + FP +LSL + + Sbjct: 192 LATIEDSMARHAAALTAARLHVIE-RLNALLAAGAADPFPAARLSLDCPIGAELAHRPAL 250 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EE+ + + + + ++ + P R+DL +++ + A STG+Q+ +LV I LA Sbjct: 251 AVEEWLRGRYAATRAEPVA---ALSPQRADLGLEHASSGLAAALASTGQQRAMLVAIVLA 307 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L++ + G AP+LLLDE HLD R+AL + G+Q+F T T++ +L + A Sbjct: 308 HAALVAISRGAAPVLLLDEPFVHLDAAHRSALGEALHRGGAQVFCTATERDQLAALGDAA 367 Query: 363 KF 364 + Sbjct: 368 IW 369 >gi|58038494|ref|YP_190458.1| recombination protein F [Gluconobacter oxydans 621H] gi|58000908|gb|AAW59802.1| DNA replication and repair protein RecF [Gluconobacter oxydans 621H] Length = 367 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 116/369 (31%), Positives = 188/369 (50%), Gaps = 12/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L +++FRNY +A + G+NG GKTN+LEA+S L+PGRG R A+ + Sbjct: 1 MKLTRLALTDFRNYTHTVWTPEASILVLTGENGSGKTNLLEAVSLLAPGRGLRGAALPAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIRVVDELNKHLR 121 R G+ + G++ ++ T D + R +++ IR + + Sbjct: 61 CRQGAERWGVAATLQSGLD-----EFRIGTGSDLSEKQRRTFRLDGENIRSQALIGQRFS 115 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 WL P MDR+F S RRRFLDR+V A+ P H R++ +R + RNR+L+E ++ Sbjct: 116 CVWLTPQMDRLFQEGSSGRRRFLDRLVMALSPDHGRQIAAHDRSVVTRNRVLSERPNEAE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 W +SIE +A V + AR+ +I ++++ E + F L L + + Sbjct: 176 WLTSIEDSIARHAVAASAARLALIESMNAHPFE---NDGFSASTLHLDCAISSRLTTQPA 232 Query: 242 ALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E++ + L R D T +G HR+D ++ S+G+QKV+L G Sbjct: 233 LEVEDWIRNSLRQARTEDRQRSTTSVGAHRADFMLSDTATGRPAELSSSGQQKVMLTGTI 292 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+HARL++ G+AP +LLDE HLDE +R+AL + + + + +TGTD F + Sbjct: 293 LSHARLMTQERGYAPAILLDEPLLHLDEMRRHALLDSLEGLRAPVLITGTDAEAFAPIAG 352 Query: 361 TAKFMRISN 369 A+F I N Sbjct: 353 RAQFFSIRN 361 >gi|15603908|ref|NP_220423.1| recombination protein F [Rickettsia prowazekii str. Madrid E] gi|7388064|sp|Q9ZEB6|RECF_RICPR RecName: Full=DNA replication and repair protein recF gi|3860599|emb|CAA14500.1| RECF PROTEIN (recF) [Rickettsia prowazekii] gi|292571623|gb|ADE29538.1| DNA replication and repair protein RecF [Rickettsia prowazekii Rp22] Length = 360 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 118/358 (32%), Positives = 184/358 (51%), Gaps = 6/358 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +RN+ +L L D I G+NG GKTNILEAIS PGRG R + D+ + S Sbjct: 9 LTLENYRNFKNLELKTDNTPIILTGENGSGKTNILEAISLFYPGRGLRSSKLTDICKT-S 67 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + ++ GLA++S ++ +R R + N I +EL+K + WL P M Sbjct: 68 EDYCKVKTLLQSKLGLAELSTHIKRSSNR--RITEYNASKI-ANNELSKFTNMVWLTPQM 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + IF+ S +RR+FLDR+V+ D +H + +E M RN++L E D++W IE + Sbjct: 125 EGIFTSSSTDRRKFLDRIVYNFDTKHAALLNKYEYYMHERNKILAEDIRDNNWLKIIEEK 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA++ I R++ I + I + ++ E FP LS+ G ++ K + Sbjct: 185 MADISNNIANNRLKTIRFIQQAIDD-IENE-FPKADLSIDGIIEQKILNVEGDIVNFIIT 242 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 243 ELYKTRSKDKLLGRTSFGIHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEINSTIK 302 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 T PILLLDEI HLD+ +R L + Q+++T TD ++ A+ +++ Sbjct: 303 LTKITPILLLDEIFVHLDDKRRQYLMGFFNALNIQLWVTATDLDGIENFANKAQLIKL 360 >gi|6580764|gb|AAF18270.1| DNA/ATP binding protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 318 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 18/316 (5%) Query: 63 DVTRIGSPSFFSTFARVEGMEG---LADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 D+ R F+ A++ +E + ++I + S R +++N V + L++ Sbjct: 1 DLVRREGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTTSA-NALSEW 59 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYF 178 L I WL P+MDR++ + RRRFLDR+ I P H R +E MR RN+LL+ E + Sbjct: 60 LAILWLTPAMDRLYQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGY 119 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGK- 235 D W +E MAE I +AR ++++ LS E ++E+ F L+L +D + Sbjct: 120 DPLWLDGLEQIMAEQATHILLARRQLVDLLSE---EIAKQEDGLFAKADLALEEGVDSRD 176 Query: 236 ----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + L + +K R D+ RTL G HR+DL V + KA+ A STGE Sbjct: 177 LVTHNSEEIMPLLQNIWQK---SRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGE 233 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 QK +L+G+ LA LI+ G P+LLLDE++AHLD +R LF I+ G Q++MTGT+ Sbjct: 234 QKALLLGLVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTE 293 Query: 352 KSVFDSLNETAKFMRI 367 S+F++ E A + ++ Sbjct: 294 PSLFETAGEAACYFQL 309 >gi|329847541|ref|ZP_08262569.1| DNA replication and repair protein recF [Asticcacaulis biprosthecum C19] gi|328842604|gb|EGF92173.1| DNA replication and repair protein recF [Asticcacaulis biprosthecum C19] Length = 290 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 105/281 (37%), Positives = 153/281 (54%), Gaps = 20/281 (7%) Query: 97 DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 DR+ R ++I+ + +L HLR+ WL P+ DR+F +R +F DR+V+A +P H Sbjct: 22 DRAKRTVRIDQQAVPAA-QLLDHLRMIWLTPAQDRLFIEARNDRLKFFDRLVYAAEPGHA 80 Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216 + +E+ +R R +LLTEG D +W + +E ++A G ++ AR + AL + I + Sbjct: 81 AIVAAYEKALRERLKLLTEGPADETWLTVLEHKLAANGARMTEARQAAMQALQNEIDGH- 139 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSD 272 + FP LSLTG +D + L +G R D + R+L GPHR D Sbjct: 140 -ESAFPKADLSLTGTID----------TADLTTALMNGFRHSRDRDGAAGRSLFGPHRMD 188 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 L V + DK A STGEQK +L+ I LA +S F P+LLLDE++AHLD +R+ Sbjct: 189 LAVVHRDKTRPAADCSTGEQKALLLNIILAQGARLS---AFKPVLLLDEVAAHLDPLRRH 245 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 ALF +G Q F TGTD S+FD L A +R+ Q L Sbjct: 246 ALFDETHALGLQTFFTGTDLSLFDGLLGRALGVRVEAAQIL 286 >gi|88607598|ref|YP_505900.1| recombination protein F [Anaplasma phagocytophilum HZ] gi|88598661|gb|ABD44131.1| putative DNA replication and repair protein RecF [Anaplasma phagocytophilum HZ] Length = 371 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 111/363 (30%), Positives = 178/363 (49%), Gaps = 6/363 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + + FRNY+ + L + + + +G+NGVGKTNILEA+S LS G G R S + Sbjct: 9 VQVVKLVNFRNYSKVELESNGKSVVLLGENGVGKTNILEAVSLLSKGPGLRNVSADCMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ + + G + I + + RSV D + L+K L I WLV Sbjct: 69 SGTTIPWLVHYNIVGNGEFFSVDIT-KKNNKRSVTI----DEKASLYSTLHKILCILWLV 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D I ER RF DRMV D + M+ +E+ R R ++L E + W SS+ Sbjct: 124 PQLDHILLKAPTERLRFFDRMVHIFDKDYSLHMVKYEKAKRDRKKILQESPHNHHWLSSL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E M+ GV I R ++ L + + E+ + F + L + D A+ + Sbjct: 184 EEIMSASGVHIAKIRQHVLETLHATLAEHSSRSTFFKFIIRLESKVFELLDNPDKAV-DA 242 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA++L R +D+ + T G H + V K + + STGEQK++L+ + L A Sbjct: 243 YAERLRSNRNIDAARQCTTFGVHNDNFQVFNEKKDLVASSCSTGEQKILLLSLLLTAATA 302 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 G API+LLD+I +HLD R L I+ +G Q+++T D+ F+ E ++ Sbjct: 303 KHKIDGQAPIMLLDDIMSHLDPQHRKELMSIIEHLGCQVWITDVDEKNFEGFRENFQYFH 362 Query: 367 ISN 369 ++N Sbjct: 363 VAN 365 >gi|218683066|ref|ZP_03530667.1| recombination protein F [Rhizobium etli CIAT 894] Length = 166 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 79/159 (49%), Positives = 111/159 (69%) Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270 LI E + FP L L+GF+DG+F + L+++YA L + R D+ + RTL GPHR Sbjct: 3 LIEETHESSPFPSASLQLSGFMDGQFSRPSVDLEDDYAAMLAESRYRDAGAGRTLDGPHR 62 Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 +DLIV + +KA+ STGEQK +LVG+ LAHARL+ N TG APILLLDEI+AHLDE++ Sbjct: 63 ADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLLDEIAAHLDENR 122 Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 R ALF ++ +G Q FMTGTD+S+F +L + A+ +++ Sbjct: 123 RAALFDLIDGLGGQAFMTGTDRSMFSALGDRAQVFTVAD 161 >gi|68171576|ref|ZP_00544950.1| recF protein [Ehrlichia chaffeensis str. Sapulpa] gi|88658291|ref|YP_506906.1| recombination protein F [Ehrlichia chaffeensis str. Arkansas] gi|67999002|gb|EAM85679.1| recF protein [Ehrlichia chaffeensis str. Sapulpa] gi|88599748|gb|ABD45217.1| putative DNA replication and repair protein RecF [Ehrlichia chaffeensis str. Arkansas] Length = 372 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 110/368 (29%), Positives = 179/368 (48%), Gaps = 10/368 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + FRNY +L L ++ + +G NG GKTNILEAIS LS G G R + + Sbjct: 9 INNLRLVNFRNYINLELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNTESMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +S ++ G+ I+I + R++ N + L+K I WL+ Sbjct: 69 SLSNSPWSVSYQMHTQNGIYPIAIS-RNHNKRAILISNKN----QSYTTLHKITSIIWLI 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D IF ER RF DR+ D ++ +I + + + R++LL D+ W SS+ Sbjct: 124 PQLDHIFLKSQSERLRFFDRIAHIFDTKYAIHIIKYNKAKQERSKLLYNNSIDNFWLSSL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E+ +AE G+ I R ++ L + + + + F + + + DQ E Sbjct: 184 ESIIAENGINIARIRFNVLQTLQNTLSQNSKSHAFFKAIIKIQSQVFNLLDQENSI--EL 241 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Y + L + R DS+S G H + + + +K + + STGEQK++L+ + L+ Sbjct: 242 YKEHLKNNRSKDSLSNLVNFGVHNDNFQIFHSEKNLIANYCSTGEQKILLLSLILSSVFA 301 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364 N G PILLLD++ +HLD + L I+ DI Q+++T D + F E KF Sbjct: 302 KQN-IGEYPILLLDDVMSHLDAYHQEKLLEIIRDIKCQVWLTDIDLTQQNFTKHKEYFKF 360 Query: 365 MRISNHQA 372 ++N+ A Sbjct: 361 FHVANNTA 368 >gi|73666678|ref|YP_302694.1| recombination protein F [Ehrlichia canis str. Jake] gi|72393819|gb|AAZ68096.1| RecF protein [Ehrlichia canis str. Jake] Length = 372 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 181/371 (48%), Gaps = 10/371 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + FRNY++L L ++ + +G NG GKTNILEAIS LS G G R + + Sbjct: 9 INNLRLVNFRNYSNLELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNTESMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +S ++ G+ I I +R+++ + N + L+K + I+WL+ Sbjct: 69 STSDSPWSLSYQIHTQNGIYPIVI---SRNNKQRNIIISNKSQNYIT--LHKIISITWLI 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D IF ER RF DR+ D ++ +I + + + R+RLL D+ W SS+ Sbjct: 124 PQLDHIFLKSQSERLRFFDRITHIFDTKYASYIIKYNKAKQERSRLLHNNSTDNFWLSSL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E+ +AE G+ I R ++ L S + + F + + + DQ E Sbjct: 184 ESIIAENGINIARTRFNVMQILQSSLSQNSHSNAFFKAVIKIQSQVFDLLDQEDSI--EL 241 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Y + L R DS+S G H + + + +K + + STGEQK++L+ + L+ Sbjct: 242 YKEHLKKNRAKDSLSNLVSFGVHNDNFQIFHLEKTLIANNCSTGEQKILLLSLILSSVIA 301 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364 N G PILLLD++ +HLD + L + +I Q+++T D + F E KF Sbjct: 302 KQN-IGEYPILLLDDVMSHLDAFHQEKLIETIINIKCQVWLTDIDLTQQNFAKYREYFKF 360 Query: 365 MRISNHQALCI 375 I N+ A+ + Sbjct: 361 FHIINNTAILL 371 >gi|222475581|ref|YP_002563998.1| RECF protein (recF) [Anaplasma marginale str. Florida] gi|222419719|gb|ACM49742.1| RECF protein (recF) [Anaplasma marginale str. Florida] Length = 371 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 117/374 (31%), Positives = 179/374 (47%), Gaps = 22/374 (5%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R I+ + + FRNY L + +G+NG GKTNILEAIS LS G G R S A Sbjct: 6 RSCIQSIKLCNFRNYTRAELESHGHSVVLLGENGSGKTNILEAISLLSKGPGLRNVSAAC 65 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S + +S V + G A S+ + +++ R L I D + L+ L I Sbjct: 66 MQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLI-DEKAGLYSTLHNMLCIV 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL+P +D I ER RF DR+V D + ++ +E+ R R ++L E D +W Sbjct: 121 WLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVNWL 180 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCA 242 +S+E MA GV I AR+ + NAL L + N P +K ++ D + Sbjct: 181 TSLENVMAASGVCI--ARMRL-NALEILQKTMADNDINSPFLKFNI------HLDSAVFE 231 Query: 243 LKEE-------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 L E Y ++L + R D + T G H + DK + ++ STGEQK++ Sbjct: 232 LLESQEHAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASNCSTGEQKIL 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+ + L A API+LLD+I +HLD + L + + D+G Q ++T D F Sbjct: 292 LLSLLLTAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNF 351 Query: 356 DSLNETAKFMRISN 369 + L +RI++ Sbjct: 352 EGLERHFVRLRITD 365 >gi|56417217|ref|YP_154291.1| recombination protein F [Anaplasma marginale str. St. Maries] gi|56388449|gb|AAV87036.1| RECF protein [Anaplasma marginale str. St. Maries] Length = 371 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 117/374 (31%), Positives = 178/374 (47%), Gaps = 22/374 (5%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R I+ + + FRNY L + +G+NG GKTNILEAIS LS G G R S A Sbjct: 6 RSCIQSIKLCNFRNYTRAELESHGHSVVLLGENGSGKTNILEAISLLSKGPGLRNVSAAC 65 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S + +S V + G A S+ + +++ R L I D + L+ L I Sbjct: 66 MQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLI-DEKAGLYSTLHNMLCIV 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL+P +D I ER RF DR+V D + ++ +E+ R R ++L E D +W Sbjct: 121 WLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVNWL 180 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCA 242 +S+E MA GV I AR+ + NAL L + N P +K ++ D + Sbjct: 181 TSLENVMAASGVCI--ARMRL-NALEILQKTMADNDINSPFLKFNI------HLDSAVFE 231 Query: 243 LKEE-------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 L E Y ++L + R D + T G H + DK + + STGEQK++ Sbjct: 232 LLESQEHAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASDCSTGEQKIL 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+ + L A API+LLD+I +HLD + L + + D+G Q ++T D F Sbjct: 292 LLSLLLTAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNF 351 Query: 356 DSLNETAKFMRISN 369 + L +RI++ Sbjct: 352 EGLERHFVRLRITD 365 >gi|255003571|ref|ZP_05278535.1| recombination protein F [Anaplasma marginale str. Puerto Rico] gi|255004698|ref|ZP_05279499.1| recombination protein F [Anaplasma marginale str. Virginia] Length = 371 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 117/374 (31%), Positives = 177/374 (47%), Gaps = 22/374 (5%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R I+ + + FRNY L + +G NG GKTNILEAIS LS G G R S A Sbjct: 6 RSCIQSIKLCNFRNYTRAELESHGHSVVLLGANGSGKTNILEAISLLSKGPGLRNVSAAC 65 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S + +S V + G A S+ + +++ R L I D + L+ L I Sbjct: 66 MQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLI-DEKAGLYSTLHNMLCIV 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL+P +D I ER RF DR+V D + ++ +E+ R R ++L E D +W Sbjct: 121 WLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVNWL 180 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCA 242 +S+E MA GV I AR+ + NAL L + N P +K ++ D + Sbjct: 181 TSLENVMAASGVCI--ARMRL-NALEILQKTMADNDINSPFLKFNI------HLDSAVFE 231 Query: 243 LKEE-------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 L E Y ++L + R D + T G H + DK + + STGEQK++ Sbjct: 232 LLESQEHAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASDCSTGEQKIL 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+ + L A API+LLD+I +HLD + L + + D+G Q ++T D F Sbjct: 292 LLSLLLTAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNF 351 Query: 356 DSLNETAKFMRISN 369 + L +RI++ Sbjct: 352 EGLERHFVRLRITD 365 >gi|58616769|ref|YP_195968.1| recombination protein F [Ehrlichia ruminantium str. Gardel] gi|58416381|emb|CAI27494.1| DNA replication and repair protein recF [Ehrlichia ruminantium str. Gardel] Length = 372 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 114/371 (30%), Positives = 179/371 (48%), Gaps = 19/371 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + FRNY ++ L ++ + +G NG GKTNILEAIS LS G G R S + Sbjct: 9 IQNLRLINFRNYLNIELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVSMESMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S +S + + I I + + RS+ N I L+K + + WL+ Sbjct: 69 SSSDLPWSVSYHIHNQNSIYPIVIA-KGNNKRSILISNKNHNYIT----LHKIISVVWLI 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D IF ER +F DR+V D + +I + + + RN+LL D+ W SS+ Sbjct: 124 PQLDHIFLKSQSERLKFFDRVVHIFDTNYTSYIIKYNKAKQDRNKLLRSNSVDNFWLSSL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENF----PHIKLSLTGFLDGKFDQSFCA 242 E+ MAE G+KI R+ ++ L +++ + +F IK + LD + S Sbjct: 184 ESIMAENGIKIAQIRLNVVQILQNVLSKNNLSNSFFKAVIEIKSQVFPLLDN--ENSI-- 239 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E Y + L R DS + G H ++ + + +K + STGEQK++L+ + L+ Sbjct: 240 --ENYKENLQKSRARDSSTNLVNFGVHNDNVQIFHLEKNLIANCCSTGEQKILLLSLVLS 297 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNE 360 + L TG PILLLD+I +HLD + L + I Q+++T D + F E Sbjct: 298 -SVLAKQDTGEYPILLLDDIMSHLDVYHQEKLLETIVSIKCQVWITDIDLKQQNFTKYKE 356 Query: 361 TAKFMRIS-NH 370 KF + NH Sbjct: 357 HFKFFHVGDNH 367 >gi|218458186|ref|ZP_03498277.1| recombination protein F [Rhizobium etli Kim 5] Length = 152 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 64/146 (43%), Positives = 94/146 (64%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA++ L D +H + G+NG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVCLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +ET ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGTAGGFSIFAALDGMEGEVEIGTGVETGEETTTRRLRINGTAAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDR 146 R+ WL P R + RFLDR Sbjct: 121 RLLWLTPGDGRALYRRLVRPPRFLDR 146 >gi|148284348|ref|YP_001248438.1| recombination protein F [Orientia tsutsugamushi str. Boryong] gi|146739787|emb|CAM79662.1| DNA replication and repair protein [Orientia tsutsugamushi str. Boryong] Length = 383 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 103/361 (28%), Positives = 168/361 (46%), Gaps = 14/361 (3%) Query: 2 TNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 TN I +I L + +RN L + + +G NG GKTN+LE+IS +PGRG R A Sbjct: 9 TNSICRITKLVLHNYRNLTELTVSPKCDKILIIGKNGSGKTNLLESISLFAPGRGLRGAK 68 Query: 61 YADVTRIGS----------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 Y+D+ R + ++ A + + + I + + R +++ND I Sbjct: 69 YSDILRKEANSSSSSSNCHNTYSQWIAEITLQTAINIVKISTNYYQNTTKRNIKLNDNTI 128 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 +L + + + + P M+ +F + +RR+ LDR+V+ D +H R+ +E +R R Sbjct: 129 -TSHKLLELVNMICITPQMESVFLNGATQRRKLLDRIVYLFDYKHAERVNKYEYYLRERM 187 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 LL + W + IE +A + V+I R I L + E FP +KL + Sbjct: 188 ILLRSNSSQTRWINVIENCLASISVEIASCRYNAIKQLQLYLDEI--DAPFPKVKLDIQC 245 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + Q L E + + R +D S ++ G HRSD V + K STG Sbjct: 246 QIAELCLQQSPKLLELINSRFCNSRTIDGNSGKSNFGVHRSDFKVIHSVKNQLAQFCSTG 305 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 EQK +L+ + +A PILLLDE+ HLD +KR L + +T Q +++ T Sbjct: 306 EQKALLISLLIAQMLQSRKNYNRFPILLLDELFIHLDIEKRQYLAKFLTQFPVQCWISST 365 Query: 351 D 351 + Sbjct: 366 E 366 >gi|291165886|gb|EFE27933.1| DNA replication and repair protein RecF [Filifactor alocis ATCC 35896] Length = 355 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 113/353 (32%), Positives = 182/353 (51%), Gaps = 23/353 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L + FRNY L L+F +FVG NG GKTN+LEAIS S GR FR D+ Sbjct: 1 MKIHQLTLKNFRNYEQLELLFKEGANVFVGQNGQGKTNVLEAISLFSVGRSFRTVRDLDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + A VE + G I +KL ++V+ IN V I + +L L I Sbjct: 61 VAFGQDA-ATVSAIVENLHGRYTIDMKLGKSIKKAVK---INSVPIEKLQDLFGVLNIVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P ++ ERR FLDR + + PR+ R + ++ +++ RN LL + D Sbjct: 117 FSPDDLKLVKDGPKERRLFLDREISQLKPRYYRILSEYYKVLNQRNTLLKQE-VDEVLLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCAL 243 Q+A+ G +I+ R E I I E+ Q+ H K+S L+ +++ + A+ Sbjct: 176 IYTQQIAKSGFQIHKMREEFIEH----IREFAQE---IHSKISSKKEVLEIEYEPNVYAI 228 Query: 244 -KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAH-GSTGEQKVVLVGI 299 +EEY + L DG++ D + + + G H+ D L+++ D I H GS G+++ + + Sbjct: 229 SEEEYFRYLMDGKEHDFIRKHSTRGIHKDDVALVINEMD----IRHFGSQGQKRSAAISL 284 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+ ++I TG PI+LLD+I + LD ++ L VT+ +Q+F+T +K Sbjct: 285 KLSEIQMIYQDTGEYPIVLLDDIFSELDYSRQRMLLDYVTN--TQVFVTTAEK 335 >gi|189183858|ref|YP_001937643.1| recombination protein F [Orientia tsutsugamushi str. Ikeda] gi|189180629|dbj|BAG40409.1| RecF protein [Orientia tsutsugamushi str. Ikeda] Length = 378 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 103/361 (28%), Positives = 171/361 (47%), Gaps = 14/361 (3%) Query: 2 TNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 TN I +I L + +RN L + + +G NG GKTN+LE+IS +PGRG R A Sbjct: 4 TNSICRITKLVLHNYRNLTELIVSPQCDKILIIGKNGSGKTNLLESISLFAPGRGLRGAK 63 Query: 61 YADVTR----IGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 Y+D+ R + S S + A + + + I + + R +++ND I Sbjct: 64 YSDILRKEANLSSNSSNCHNAYSQWIAEITLQTAINIVKISTNYYQNTTKRNIKLNDNTI 123 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 +L + + + + P M+ +F + +RR+ LDR+V+ D +H R+ +E +R R Sbjct: 124 -TSHKLLELVNMICITPQMESVFLNGATQRRKLLDRIVYLFDYKHAERVNKYEYYLRERM 182 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 LL + W + IE +A + ++I R I L L ++ + FP +KL + Sbjct: 183 ILLRSNSSQTRWINVIENCLASISLEIASCRYNAIKQL-QLYLDEIDAP-FPKVKLDIQC 240 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + Q L E + + R +D S ++ G HRSD V + K STG Sbjct: 241 QIAELYLQQSPKLLELINSRFCNSRTIDCNSGKSNFGVHRSDFKVIHSVKNQLAQFCSTG 300 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 EQK +L+ + +A PILLLDE+ HLD +KR L + + Q +++ T Sbjct: 301 EQKALLISLLIAQMLQSRKNYNRFPILLLDELFIHLDIEKRQYLAKFLAQFPVQCWISST 360 Query: 351 D 351 + Sbjct: 361 E 361 >gi|57238782|ref|YP_179918.1| recombination protein F [Ehrlichia ruminantium str. Welgevonden] gi|58578707|ref|YP_196919.1| recombination protein F [Ehrlichia ruminantium str. Welgevonden] gi|57160861|emb|CAH57763.1| putative DNA replication and repair protein RecF [Ehrlichia ruminantium str. Welgevonden] gi|58417333|emb|CAI26537.1| DNA replication and repair protein recF [Ehrlichia ruminantium str. Welgevonden] Length = 372 Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 110/367 (29%), Positives = 177/367 (48%), Gaps = 18/367 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + FRNY ++ L + + +G NG GKTNILEAIS LS G G R + + Sbjct: 9 IQNLRLINFRNYLNIELDTSGKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNMESMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S +S + + I I + + RS+ + I L+K + + WL+ Sbjct: 69 SSSDLPWSISYHIHNQNSIYPIVIA-KGNNKRSILISNKSHNYIT----LHKIISVVWLI 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D IF ER +F DR+V D + +I + + + RN+LL D+ W SS+ Sbjct: 124 PQLDHIFLKSQSERLKFFDRVVHIFDTNYTSYIIKYNKAKQDRNKLLRSNSVDNFWLSSL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENF----PHIKLSLTGFLDGKFDQSFCA 242 E+ MAE G+KI R+ ++ L +++ + +F IK + LD + S Sbjct: 184 ESIMAENGIKIAQIRLNVVQILQNVLSKNNLSNSFFKAVIEIKSQVFPLLDN--ENSI-- 239 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E Y + L R DS + G H ++ + + +K + + STGEQK++L+ + L+ Sbjct: 240 --ENYKENLQKSRARDSSTNLVNFGVHNDNVQIFHLEKNLIASCCSTGEQKILLLSLVLS 297 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNE 360 + L TG PILLLD+I +HLD + L + I Q+++T D + F E Sbjct: 298 -SVLAKQDTGEYPILLLDDIMSHLDVYHQEKLLETIVSIKCQVWITDIDLKQQNFTKYKE 356 Query: 361 TAKFMRI 367 KF + Sbjct: 357 HFKFFHV 363 >gi|58696694|ref|ZP_00372244.1| recF protein [Wolbachia endosymbiont of Drosophila simulans] gi|58698389|ref|ZP_00373302.1| recF protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225630989|ref|YP_002727780.1| recombination protein F [Wolbachia sp. wRi] gi|58535102|gb|EAL59188.1| recF protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58537136|gb|EAL60246.1| recF protein [Wolbachia endosymbiont of Drosophila simulans] gi|225592970|gb|ACN95989.1| recombination protein F [Wolbachia sp. wRi] Length = 365 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 177/371 (47%), Gaps = 15/371 (4%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M IK L + FR++++ L D + G NG+GKTNILEAIS L+ G ++A Sbjct: 1 MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60 Query: 61 YADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +++ R + + + GM+ SI + D+ + +QI+ L K Sbjct: 61 ASEIQNRFSNEDWVVHYDFFNGMDF---NSIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + WL+P MD + +R +FLDR+V + + + + R R++LL E D Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 +W SS+E MA V I R ++ L I + E FP L + L + Sbjct: 176 KNWLSSLENIMAVNAVSILRMRSSVLKTLQDTIDNH-SGELFPKASLKFSSQL------T 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVG 298 E + +L + R+ DS++ R G H + V +C K + I STGEQK++L+ Sbjct: 229 LDDTAEYFQNRLKENREKDSLTGRVTFGVHNDNFRV-FCQKRNVPINLCSTGEQKLLLLS 287 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 I L+ + AP+LLLD+I +HLD+ R AL V I Q ++T ++ F+S Sbjct: 288 IILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALIEEVLSIQCQTWITDVNQDNFNSY 347 Query: 359 NETAKFMRISN 369 + KF +SN Sbjct: 348 LYSFKFFELSN 358 >gi|254995385|ref|ZP_05277575.1| recombination protein F [Anaplasma marginale str. Mississippi] Length = 339 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 110/347 (31%), Positives = 168/347 (48%), Gaps = 22/347 (6%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90 + +G+NG GKTNILEAIS LS G G R S A + S + +S V + G A S+ Sbjct: 1 MLLGENGSGKTNILEAISLLSKGPGLRNVSAACMQNRESSAPWSVHHAV--LSGNAQCSV 58 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150 + +++ R L I D + L+ L I WL+P +D I ER RF DR+V Sbjct: 59 SITKHENK--RRLLI-DEKAGLYSTLHNMLCIVWLMPQLDHILLKAPSERLRFFDRVVHI 115 Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210 D + ++ +E+ R R ++L E D +W +S+E MA GV IAR+ + NAL Sbjct: 116 FDKDYSSHIVRYEKAKRDRRKILREAPQDVNWLTSLENVMAASGV--CIARMRL-NALEI 172 Query: 211 LIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEE-------YAKKLFDGRKMDSMSR 262 L + N P +K ++ D + L E Y ++L + R D + Sbjct: 173 LQKTMADNDINSPFLKFNI------HLDSAVFELLESQEHAVSRYMQQLGNSRMKDMHGQ 226 Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322 T G H + DK + + STGEQK++L+ + L A API+LLD+I Sbjct: 227 LTSFGIHNDHFQISNADKNLAASDCSTGEQKILLLSLLLTAAVAKRKVHNQAPIMLLDDI 286 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 +HLD + L + + D+G Q ++T D F+ L +RI++ Sbjct: 287 MSHLDYTHKQELVQTIKDVGCQTWITDVDDRNFEGLERHFVRLRITD 333 >gi|42521081|ref|NP_966996.1| recombination protein F [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410822|gb|AAS14930.1| recF protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 365 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 176/371 (47%), Gaps = 15/371 (4%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M IK L + FR++++ L D + G NG+GKTNILEAIS L+ G ++A Sbjct: 1 MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60 Query: 61 YADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +++ R + + + GM+ SI + D+ + +QI+ L K Sbjct: 61 ASEIQNRFSNEDWVVHYDFFNGMDF---NSIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + WL+P MD + +R +FLDR+V + + + + R R++LL E D Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 +W SS+E MA V I R ++ L I + E FP L + L + Sbjct: 176 ENWLSSLENIMAVNAVSILRMRSSVLKTLQDTIDNH-SSEFFPKASLKFSSQL------T 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVG 298 E + L + R+ DS++ R G H + V +C K + I STGEQK++L+ Sbjct: 229 LDDTAEYFQNLLKENREKDSLTGRVTFGVHNDNFRV-FCQKRNVPINLCSTGEQKLLLLS 287 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 I L+ + AP+LLLD+I +HLD+ R AL V I Q ++T ++ F+S Sbjct: 288 IILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALMEEVLSIQCQTWITDVNQDNFNSY 347 Query: 359 NETAKFMRISN 369 + KF +SN Sbjct: 348 LYSFKFFELSN 358 >gi|269958391|ref|YP_003328178.1| recombination protein F [Anaplasma centrale str. Israel] gi|269848220|gb|ACZ48864.1| recombination protein F [Anaplasma centrale str. Israel] Length = 371 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 114/363 (31%), Positives = 175/363 (48%), Gaps = 14/363 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + FRNY L + +G NG GKTNILEAIS LS G G R S + Sbjct: 9 IQSIKLCNFRNYTRAELETHGCSVVLLGKNGSGKTNILEAISLLSKGPGLRNVSADCMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + + V + G S+ + +++ R L I++ + L+ L I WL+ Sbjct: 69 HESGTPWRVHHTV--LSGSTQFSVSVTKHENK--RRLFIDEKA-GLYSTLHNMLCIVWLM 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D + ER RF DR+V D + ++ +ER R R ++L E D +W +S+ Sbjct: 124 PQLDHVLLKAPSERLRFFDRVVHVFDKDYASHIVRYERARRDRRKVLREAPQDLNWLASL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-GKFD--QSFCAL 243 E MA GV I R +NAL ++ + + N L T LD G F+ +S Sbjct: 184 ENVMAISGVYIAQTR---LNALR-ILQQTMADNNIDSPFLKFTIHLDSGVFELLESQEHA 239 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +Y ++L R D + T G H + + DK +T + STGEQK++L+ + L Sbjct: 240 VSQYMQRLKQSRAQDMHGQLTSFGVHNDHFQISHADKNLTASSCSTGEQKILLLSLLLTA 299 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 A API+LLD+I +HLD R L + + +G Q ++T D+ F+ L + Sbjct: 300 AITKHRVHSQAPIMLLDDIMSHLDYTHRQELVQTIKSVGCQTWITDVDERNFEGLEQC-- 357 Query: 364 FMR 366 FMR Sbjct: 358 FMR 360 >gi|254796587|ref|YP_003081423.1| putative DNA replication and repair protein RecF [Neorickettsia risticii str. Illinois] gi|254589828|gb|ACT69190.1| putative DNA replication and repair protein RecF [Neorickettsia risticii str. Illinois] Length = 349 Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 104/346 (30%), Positives = 158/346 (45%), Gaps = 20/346 (5%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +FRN+A F+ +H + G NG GKT+ILEAIS LSPG G R AS ++ R GS S Sbjct: 10 LKDFRNHAFWTASFECRHVLLCGKNGAGKTSILEAISKLSPGLGLRSASNTEMIRSGSLS 69 Query: 72 FFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130 + + G AD+ + + +D+ R QIN ++ ++ +++ WL P M Sbjct: 70 WEVSLK----FAGSADLRGVGMSYCEDK--RITQINGKSVQCFKKVIDLVKVMWLTPQMS 123 Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190 +F+ RRRF DRMV +P+H ++ +ER R ++L G W E ++ Sbjct: 124 NLFTTDKSVRRRFFDRMVALSEPQHLENLVMYERFKSERLKILNAGA-SKMWLDVNEKKL 182 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFCALKEEYAK 249 AEL + I ARV I L M F +++ L + D+ + Sbjct: 183 AELCIAITDARVSFIRQL----MSNFPSRGFGSLEIKLLCPVASAIDKVGSSQQMQSIQS 238 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L R +D+++ + G HR+D + T STGEQK++++GI LA LI Sbjct: 239 ALERSRAVDTVTGKMQFGVHRTDFLATVRQGDNTARCYSTGEQKLLILGIMLAAGELIDI 298 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 AHLD +A T Q F + D S F Sbjct: 299 ILLDDIF-------AHLDPQNSSAFLLEATKKNCQFFFSDLDNSKF 337 >gi|190571298|ref|YP_001975656.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018695|ref|ZP_03334503.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357570|emb|CAQ55009.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995646|gb|EEB56286.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 359 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 109/370 (29%), Positives = 176/370 (47%), Gaps = 15/370 (4%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 MT IK L + FR++++ L D + + G NG+GKTNILEAIS L+ G ++A Sbjct: 1 MTTHCYIKKLKLYNFRSHSNFELDLDDRPVVVTGKNGIGKTNILEAISLLAKSNGMKKAK 60 Query: 61 YADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 ++ R + S+ + G E L I I + + + +QI+ L + Sbjct: 61 INEMQNRRSNESWVVYYDFFNGAE-LNSIGIG----KNLNKKLIQIDGKTQSSYSSLYRI 115 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + WL+P MD I +R +FLDR+V + + + + + R++LL E D Sbjct: 116 SNVIWLIPQMDYILLNSPSDRLKFLDRIVSLFEENYTYCYMKYRKAKHERSKLLRENILD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 SW SS+E MA + I R ++ L I + E FP L + L + Sbjct: 176 ESWLSSLENVMATNAIDILRMRSSVLKILQDTIDNH-SCEFFPKASLKFSSQL------T 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA-ITIAHGSTGEQKVVLVG 298 E + +L + R+ DS++ R H + V +C K + I STGEQK++L+ Sbjct: 229 LNDTAEYFQNRLKENREKDSLTGRVTFSVHNDNFWV-FCQKGDMPINLCSTGEQKLLLLS 287 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 I L+ + AP+LLLD+I +HLD+D R L V I Q ++T ++ F++ Sbjct: 288 IILSSVKARCIHYNKAPLLLLDDIMSHLDKDYRKVLMEEVLSIQCQTWITDVNQDNFNNY 347 Query: 359 NETAKFMRIS 368 + KF +S Sbjct: 348 LCSFKFFELS 357 >gi|225677102|ref|ZP_03788104.1| recombination protein F [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590861|gb|EEH12086.1| recombination protein F [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 365 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 108/371 (29%), Positives = 177/371 (47%), Gaps = 15/371 (4%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M IK L + FR++++ L D + G NG+GKTNILEAIS L+ G ++A Sbjct: 1 MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60 Query: 61 YADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +++ R + + + GM+ SI + D+ + +QI+ L K Sbjct: 61 ASEIQNRFSNEDWIVHYDFFNGMDF---NSIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + WL+P MD + +R +FLDR+V + + + + + R++LL + + Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKYRKAKHERSKLLRKNILN 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 +W SS+E MA V I R ++ L I + E FP L + L + Sbjct: 176 KNWLSSLENIMAVNAVSILRMRSSVLKTLQDTIDNH-SSELFPKASLKFSSQL------T 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVG 298 E + +L + R+ DS++ R G H + V +C K + I STGEQK++L+ Sbjct: 229 LNDTAEYFQNRLKENREKDSLTGRVTFGVHNDNFRV-FCQKRNVPINLCSTGEQKLLLLS 287 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 I L+ + AP+LLLD+I +HLD+ R AL V I Q ++T ++ F+S Sbjct: 288 IILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALMEEVLSIQCQTWITDVNQDNFNSY 347 Query: 359 NETAKFMRISN 369 + KF +SN Sbjct: 348 LYSFKFFELSN 358 >gi|218682258|ref|ZP_03529859.1| recombination protein F [Rhizobium etli CIAT 894] Length = 123 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 57/122 (46%), Positives = 83/122 (68%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYAS L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYASAALTLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +ET ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETGEESTARRLRINGTPAKTADELTDHL 120 Query: 121 RI 122 R+ Sbjct: 121 RL 122 >gi|296531698|ref|ZP_06894532.1| recombination protein F [Roseomonas cervicalis ATCC 49957] gi|296267973|gb|EFH13766.1| recombination protein F [Roseomonas cervicalis ATCC 49957] Length = 259 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FR+YA L L F A + G NGVGKTN+LEAIS L+PGRG R A ++ Sbjct: 7 LRLTRLMLQDFRSYAQLDLRFQAGVVVIAGRNGVGKTNLLEAISLLTPGRGLRNARAGEL 66 Query: 65 TR-IGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G S T A +G G I + DR R +++ +R EL+ + Sbjct: 67 GRREGEESRPWTIAGHFDGPAGPMTIGTGQDPASDR--RGFRLDGAPLRSQAELSAQIAA 124 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P MDR+F + RR+FLDR+V+A +P H R + +E M RNRLL EG D+ W Sbjct: 125 LWLTPQMDRLFQEGASGRRKFLDRLVWAREPSHARDVAAYESAMSQRNRLLAEGRRDARW 184 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 +++E MA V +R L++ + + FP +L L Sbjct: 185 LAALEDTMARHAVAAIASRRTSCAQLNATLRAGIAGA-FPAARLEL 229 >gi|154503046|ref|ZP_02040106.1| hypothetical protein RUMGNA_00868 [Ruminococcus gnavus ATCC 29149] gi|153796287|gb|EDN78707.1| hypothetical protein RUMGNA_00868 [Ruminococcus gnavus ATCC 29149] Length = 361 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 105/355 (29%), Positives = 165/355 (46%), Gaps = 24/355 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L + FD++ I GDN +GKTNILEA+ + R D+ + Sbjct: 3 IKSLKLKNYRNYELLDMTFDSKTNILYGDNALGKTNILEALYLSGTTKSHRGTKDRDLIQ 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S T +GME D+ +K S + + IN + IR EL + + Sbjct: 63 FGREESHLETIVEKKGMEFQIDMHLK-----KNSPKGIAINKIPIRKASELFGIVHFVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I RRRF+D + ID + + ++ R++ RN LL E Y + Sbjct: 118 SPEDLNIIKDGPAGRRRFIDLELSQIDKVYLSNLSNYNRIINQRNSLLKELYHQDHLMDT 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQS 239 + + Q+AE G K+ +R + I ++ +I + I LTG ++ ++ S Sbjct: 178 LDIWDMQLAEYGTKVIESRKQFIRQVNQIIAD---------IHYRLTGGRERIELSYESS 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +L E A K R+ D + T +GPHR DL D I GS G+Q+ + + Sbjct: 229 LGSLSLEQALK--KNRERDIRMKSTSVGPHRDDLCFLSGDLDIR-KFGSQGQQRTAALSL 285 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 L+ L+ PILLLD++ + LD+ ++N L + DI + I TG D+ V Sbjct: 286 KLSEIELVKEVIKDTPILLLDDVLSELDKHRQNYLLDSIHDIQTVITCTGLDEFV 340 >gi|154483926|ref|ZP_02026374.1| hypothetical protein EUBVEN_01632 [Eubacterium ventriosum ATCC 27560] gi|149735417|gb|EDM51303.1| hypothetical protein EUBVEN_01632 [Eubacterium ventriosum ATCC 27560] Length = 362 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 100/350 (28%), Positives = 171/350 (48%), Gaps = 24/350 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI-G 68 + +S FRNY SL L D + I G N GKTN+LEAI S + R + A++ + Sbjct: 6 IELSNFRNYDSLSLELDDKTNILYGKNAQGKTNVLEAIYLCSTTKSHRSSKDAELIKFEN 65 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + F +G E DI + R ++S + + IN + I+ EL + + P Sbjct: 66 NEGHIKLFINKKGREYRIDIHL----RKNKS-KGIAINGIPIKKASELFGIFNVIFFSPE 120 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 I ERRRF+D + +D + +I++ +++ RN+LL + Y +++ Sbjct: 121 DLDIIKNGPAERRRFVDMELCQLDKIYVYNLINYNKVLGQRNQLLKDIYMKPELEDTLDV 180 Query: 189 ---QMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCAL 243 Q+AE G K+ R + I ++ +I +K EN I++ + C Sbjct: 181 WDMQLAEYGSKVIKRREQFIKDINKIIKPIHRKLTENSEEIEVVY---------KKSCNE 231 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLA 302 E Y K+ + RK D + T GPHR D++ + +K I I +GS G+++ V + + LA Sbjct: 232 DELY-NKIIENRKKDIKLKSTSAGPHRDDIL--FFNKDINIRTYGSQGQKRTVALSLKLA 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+ + P+LLLD++ + LD D++N L + + +I + I TG D+ Sbjct: 289 EIELVKSLINDTPVLLLDDVLSELDSDRQNHLLKSLDEIQTVITCTGLDE 338 >gi|307243415|ref|ZP_07525572.1| putative recombination protein F [Peptostreptococcus stomatis DSM 17678] gi|306493225|gb|EFM65221.1| putative recombination protein F [Peptostreptococcus stomatis DSM 17678] Length = 371 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 98/360 (27%), Positives = 179/360 (49%), Gaps = 23/360 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + +RNY L + F+ + + +G NG GKTN++EAI F+S GR FR ++ + Sbjct: 3 INSLKLVNYRNYDDLLVEFNKKVNLIIGMNGQGKTNLVEAIGFMSIGRSFRTNKDRELIK 62 Query: 67 IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + F R ++ K+E + + +++N V I+ + EL +L + Sbjct: 63 FSAENLYCGCNFTR-------NNMDKKIEIVVAKDKKGVKVNGVSIKSMQELLGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P R+ ERR F+D+ + I PR+ + ++ +++ RN +L D + Sbjct: 116 FSPEDLRLVKDGPKERRSFIDKEISQIMPRYYSLLTNYNKILHQRNTVLKSYRIDENLLD 175 Query: 185 SIEAQMAELGVKINIAR---VEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQS 239 + M+ +I + R +E I+ +SS I + + KEN I + G+ D S Sbjct: 176 VYDETMSTYASEIYLIRNKFIEKISKISSEIHKNLTMDKENLTIIYKNQVDLESGQ-DAS 234 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 LK +KL + R D ++R T +GPH+ D+ + D + + +GS G+Q+ + + Sbjct: 235 QVRLK--LLEKLRESRGGDMITRTTKVGPHKDDMKIFINDIDVRM-YGSQGQQRTASISL 291 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KSVFD 356 L+ LI G P+L+LD++ + LD+ ++ L + DI Q+F+T D K++ D Sbjct: 292 KLSEIELIKQEVGDYPVLILDDVFSELDQTRQKMLVEKLEDI--QMFVTSADPLHKNILD 349 >gi|331092115|ref|ZP_08340946.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 2_1_46FAA] gi|330402316|gb|EGG81887.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 2_1_46FAA] Length = 361 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 101/352 (28%), Positives = 166/352 (47%), Gaps = 18/352 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + FRNY L L FD+ I GDN GKTNILEAI + R D+ R Sbjct: 3 IKSLKLKNFRNYDLLNLDFDSATNILYGDNAQGKTNILEAIYLSGTTKSHRGTKDRDMIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S T +G+E DI +K S + + IN + IR EL + + + Sbjct: 63 FGQEESHIETVIEKKGIEFKTDIHLK-----KNSPKGIAINKMPIRKASELFGVIHLVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + +D + + ++ R++ RN+LL + Y S+ Sbjct: 118 SPEDLNIIKNGPAERRRFIDMELSQLDKVYLNDLANYNRIINQRNKLLKDIYGREDLIST 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + QMA G ++ R + I ++ +I K KL+L +++S Sbjct: 178 LDIWDMQMAHYGDRVMQRRAKFIAQINGIIENVHGKLTGGKEKLNLF------YEKSIG- 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++++ + R+ D + T +GPHR D+ D I GS G+Q+ + + L+ Sbjct: 231 -DADFSEAILKNRERDIRMKSTSVGPHRDDICFKAGDLDIR-KFGSQGQQRTAALSLKLS 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 L+ PILLLD++ + LD++++N L +++I + + TG D+ V Sbjct: 289 EIELVKLLINDTPILLLDDVLSELDKNRQNYLLDSISNIQTIVTCTGVDEFV 340 >gi|88608256|ref|YP_506094.1| putative DNA replication and repair protein RecF [Neorickettsia sennetsu str. Miyayama] gi|88600425|gb|ABD45893.1| putative DNA replication and repair protein RecF [Neorickettsia sennetsu str. Miyayama] Length = 349 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 108/351 (30%), Positives = 160/351 (45%), Gaps = 30/351 (8%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +FRN+A F +H + G NG GKT+ILEAIS LSPG G R AS ++ R GS S Sbjct: 10 VKDFRNHAFWTGSFKCRHVLLCGKNGAGKTSILEAISKLSPGLGLRSASNIEMVRSGSLS 69 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + + + G L ++ + +D+ R ++N I+ ++ +++ WL P M Sbjct: 70 WEVSL-KFAGSTDLREVGMGY--YEDK--RVTKLNGKSIQCFKKVIDLVKVMWLTPQMSN 124 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191 +F+ RR+F DRMV +P+H ++ +ER R ++L G W E ++A Sbjct: 125 LFTTDKSVRRKFFDRMVALSEPQHLENLVMYERFKSERLKILNAGA-SKMWLDVNEKKLA 183 Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENF--PHIKL-----SLTGFLDGKFDQSFCALK 244 EL + I ARV I L M + F P IKL S G + G Q C Sbjct: 184 ELCIAITDARVSFIGQL----MSNFPSKGFGSPEIKLFCPVASAIGRV-GSSQQMQC--- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L R +D+++ + G HR+D + T STGEQK++++GI LA Sbjct: 236 --IQSALERSRAIDTVTGKMQFGVHRTDFLATVRQGDNTARCYSTGEQKLLILGIILAAG 293 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 LI AHLD +A T Q F + D S F Sbjct: 294 ELIDIILLDDIF-------AHLDLHNSSAFLLEATKKNCQFFFSDLDNSKF 337 >gi|329121617|ref|ZP_08250238.1| recombination protein F [Dialister micraerophilus DSM 19965] gi|327468772|gb|EGF14249.1| recombination protein F [Dialister micraerophilus DSM 19965] Length = 356 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 98/355 (27%), Positives = 169/355 (47%), Gaps = 12/355 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + + RN+ ++ + D TIF G NG GKTN+LE+++ S G+ FR ++ Sbjct: 1 MKIKKFRLIQVRNFENIEIETDKNITIFTGKNGAGKTNLLESVNLASFGKSFRTNKDEEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G +I IK+ + + + +N+ I+ D L + Sbjct: 61 IKFDKNECTTILTFNSGKSN-HEIKIKISKTNGKQIF---LNENRIKNKD-LVGIFKTVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182 P ++ G +RRRFLD + I+PR+ I+++R ++ RN L Sbjct: 116 FNPDEMQLIKGNPQKRRRFLDMEISQINPRYYYEWINYKRAVQQRNAELKNAQIRGIKPQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+A+ I R+E I L+ I E + +N ++KL K + +F Sbjct: 176 TDLWDMQIAKGAAYIVRKRIEAIQKLNESIEKTEEILTKNRENLKLYYIQKESKKNETNF 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E Y KL + R++D +T +GPHR D++ K I+ +GS G+Q+ ++ I Sbjct: 236 DV--EWYIHKLLEKRQVDIKFCQTSVGPHRDDILFLLNGKDIS-KYGSQGQQRTAILSIK 292 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+ I TG P+LLLD++ + LD +++ LF V + Q MT T+K + Sbjct: 293 LSEMEFIKKETGEYPVLLLDDVGSELDRERKKVLFEYVKEKDIQTIMTMTEKPAY 347 >gi|51891142|ref|YP_073833.1| DNA repair and genetic recombination protein [Symbiobacterium thermophilum IAM 14863] gi|81692267|sp|Q67TK4|RECF_SYMTH RecName: Full=DNA replication and repair protein recF gi|51854831|dbj|BAD38989.1| DNA repair and genetic recombination protein [Symbiobacterium thermophilum IAM 14863] Length = 375 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/350 (28%), Positives = 163/350 (46%), Gaps = 13/350 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + FRNY SL + F + GDN GKTN+LEAI FL+ GR R + D+ + Sbjct: 3 LSTLQLGAFRNYDSLTIHFSPGLNVLYGDNAQGKTNLLEAIHFLATGRSHRTSRDPDMVQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIK--LETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + A V G ++ ++ L+TR + L+IN + R + L L + Sbjct: 63 EGREELLARAAVVR-RTGTIELELRCGLQTR-----KQLKINGIAERKIARLVGSLAVVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P ++ G RRRFLD + I + ++ + RL+ RN LL + D + Sbjct: 117 FSPDDLQLLKGPPSGRRRFLDLELSQISQTYLHHLMAYNRLVAQRNTLLKQPVIDEGLMA 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+ E G ++ + R E + LS + Y + L L G D L+ Sbjct: 177 VYDEQLVETGAQLVVRRAEAVRRLSPIASRYHRMLAEDREDLELAYQSQGVGDDGAADLE 236 Query: 245 EEYAKKLFDGRKMDSMSRR---TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + + ++ S RR TL+GPHR D+ + + + S G+Q+ ++ + L Sbjct: 237 TVRRRLERELARLRSEERRRQVTLVGPHRDDVGFWVAGRDARL-YASQGQQRTAVLALKL 295 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 A +S G P+LLLD++++ LD +R+ L V + G Q F+T TD Sbjct: 296 AELEFMSEEIGEPPLLLLDDVASELDPHRRHYLLSAVRE-GVQSFITCTD 344 >gi|289422543|ref|ZP_06424386.1| DNA replication and repair protein RecF [Peptostreptococcus anaerobius 653-L] gi|289157115|gb|EFD05737.1| DNA replication and repair protein RecF [Peptostreptococcus anaerobius 653-L] Length = 371 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/349 (24%), Positives = 171/349 (48%), Gaps = 14/349 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + +RNY L + F+ + +G NG GKTNI+E+++ ++ G+ FR + ++ + Sbjct: 3 INSLKLVNYRNYNDLSIDFNEHINLILGKNGQGKTNIVESLTLIAIGKSFRTSKDKELIK 62 Query: 67 IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + +F R +I K+E + + +++N V ++ + +L +L + Sbjct: 63 FDKDSLYIGCSFTR-------NNIDKKIEIAIAKDKKGIKVNGVSVKSIQDLLGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P ++ ERR F+D+ + I PR+ + + +++ RN+LL Y D + + Sbjct: 116 FSPEDLKLIKDGPKERRSFIDKEISQIMPRYYSILTSYNKVLDERNKLLKSQYIDRNLLA 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCA 242 +A +I + R + + LS + + QK + +K+ ++ + Sbjct: 176 VYSETLANYAAEIYLIRRDFVGKLSIISSDLHQKLTSDKEVLKIRYKSQIEVTDQDDIRS 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E+ + D ++R T IGPHR D+++ Y + +GS G+Q+ + + L+ Sbjct: 236 MREKIISAHEENIDHDMLNRNTRIGPHRDDIVI-YLNDIDVRLYGSQGQQRTASISLKLS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LI G P+L+LD++ + LD++++ L + DI Q+F+T D Sbjct: 295 EIELIKQEIGDYPVLILDDVFSELDQNRQKMLVEKLEDI--QMFVTTAD 341 >gi|296131554|ref|YP_003638801.1| DNA replication and repair protein RecF [Thermincola sp. JR] gi|296030132|gb|ADG80900.1| DNA replication and repair protein RecF [Thermincola potens JR] Length = 368 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 176/358 (49%), Gaps = 20/358 (5%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI LN FRNY +L L F + +FVGDN GKTNILEAI + GR R AD+ Sbjct: 5 KIALLN---FRNYQTLTLSFHDKLNLFVGDNAQGKTNILEAIYYSGTGRSHRTNKDADLI 61 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + + ++F E + G + I L + ++ +N V + ++ +++ Sbjct: 62 K-WNENYFILKISGENLHGRFVLEIGLNREGKKKIK---LNGVQKKRTGDILGTVKVILF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + G + RR+F+D + I P + ++ ++R++ RN LL + + + + Sbjct: 118 SPEDLTLVKGSPVVRRKFIDTEISQISPGYYYNLLKYQRILVQRNALLKDIKMNKNLADN 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + Q+A G K+ +++++ L+ L +K +L T ++ D+ + Sbjct: 178 LSVWDRQLALFGAKLIYKKLDVLKKLTPLTRLMHRKITNGKEELE-TRYISNVVDKDNLS 236 Query: 243 LKEEYAKKLF----DGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L+E +KLF + + + R T+IGPHR DL+ Y + +GS G+Q+ + Sbjct: 237 LEE--IEKLFLEKIAANRDEELDRGITIIGPHRDDLVF-YINGKEVKHYGSQGQQRSCSL 293 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 I LA L+ TG P+LLLD++ + LDED+R L V Q F+T TD S+ Sbjct: 294 SIKLAELELVKGETGEYPLLLLDDVMSELDEDRRQYLLESVQS-KIQTFITTTDASLL 350 >gi|210614351|ref|ZP_03290170.1| hypothetical protein CLONEX_02384 [Clostridium nexile DSM 1787] gi|210150695|gb|EEA81704.1| hypothetical protein CLONEX_02384 [Clostridium nexile DSM 1787] Length = 365 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 101/352 (28%), Positives = 161/352 (45%), Gaps = 18/352 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRNY L + FDA IF GDN GKTNILE+I + R D+ + Sbjct: 3 VKSLKLKNFRNYNLLNIEFDAATNIFCGDNAQGKTNILESIYLSGTTKSHRGTKDRDMIQ 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + T G+ D+ +K S + + IN + IR EL + I + Sbjct: 63 FGHDEAHIETVVEKNGIPFQIDMHLK-----KNSPKGIAINKIPIRKASELFGIINIVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + +D + + ++ R++ RN+LL + Y + + Sbjct: 118 SPEDLNIIKNGPAERRRFIDLELAQLDKLYLSDLSNYNRIINQRNKLLKDVYNRNDLLET 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 +E Q+ + G KI R + I ++ +I E +K +L L ++ Sbjct: 178 LEIWDLQLIQYGNKIIERRKQFIGQVNEIISEVHRKLTGGREELKLY------YEPGIGN 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L E+ K L R+ D + T +GPHR D+ D I GS G+Q+ + + L+ Sbjct: 232 L--EFEKALLKNRERDIRMKSTSVGPHRDDICFMTNDLDIR-KFGSQGQQRTAALSLKLS 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 L+ PILLLD++ + LD+ ++N L + D+ + I TG D V Sbjct: 289 EIELVKEIIKDTPILLLDDVLSELDKHRQNYLLDSIRDVQTLITCTGLDDFV 340 >gi|164686443|ref|ZP_02210471.1| hypothetical protein CLOBAR_00008 [Clostridium bartlettii DSM 16795] gi|164604454|gb|EDQ97919.1| hypothetical protein CLOBAR_00008 [Clostridium bartlettii DSM 16795] Length = 371 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/366 (25%), Positives = 181/366 (49%), Gaps = 16/366 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + FRNY +L L F + VG NG GKTNI+EAI LS G+ FR ++ Sbjct: 1 MRLNNLQLINFRNYDNLHLNFKRNINLLVGKNGQGKTNIVEAIYMLSFGKSFRTNKDKEI 60 Query: 65 TRIGSPSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + GS + + ++ +GL +++I + + +++N + I + EL +L + Sbjct: 61 IKFGSENLYIGGNYLKNSSKGLIEVAI------GNNKKGIKVNKIHIHKIQELLGNLNVV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P ++ ERR F+D+ + I P++ ++++ +++ RN+ L D + Sbjct: 115 IFSPEDLKLVKDGPRERRSFIDKEISQIMPKYYNYLVNYNKILIQRNKTLKNRIVDENLL 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFC 241 S + +A G I + R + I ++ + E +K N + ++ ++ + + Sbjct: 175 SVYDESLANYGAYIYVLRRDFIKKIAKISNEMHKKLTGNNEELLITYKNQINLTDEDTVK 234 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 K++ KL R+ D +R T G H+ DL + D + + +GS G+Q+ + + L Sbjct: 235 DAKDKLLSKLESNRQRDIETRMTKYGIHKDDLNIFINDLDVKL-YGSQGQQRTASISLKL 293 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KSVFDSL 358 + LI P+L+LD++ + LDE ++ L + D+ Q+F+T + K +FD Sbjct: 294 SEIELIKQEMNDNPVLILDDVFSELDETRQKLLVENLGDV--QMFITSAELAHKRIFDE- 350 Query: 359 NETAKF 364 +ETA F Sbjct: 351 SETAIF 356 >gi|188584646|ref|YP_001916191.1| DNA replication and repair protein RecF [Natranaerobius thermophilus JW/NM-WN-LF] gi|226737815|sp|B2A2Y9|RECF_NATTJ RecName: Full=DNA replication and repair protein recF gi|179349333|gb|ACB83603.1| DNA replication and repair protein RecF [Natranaerobius thermophilus JW/NM-WN-LF] Length = 386 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 183/385 (47%), Gaps = 19/385 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + FRNY++L+L F +F G N GKTN+LEAI +L+ G+ R ++ Sbjct: 1 MKLTELCLKNFRNYSNLKLNFKKPIILFFGANAQGKTNLLEAIYYLATGKSHRAQKEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + F+ +E + + I ++ ++ + L++N++ K + + Sbjct: 61 IRWETSGFYLK-GELEKEQAQYTLEIITNYQNGKN-KNLKVNNLSQTNTRNFLKTMNVVI 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRRF+D+ + +DP + + ++ + +R RN+LL + Y D + + Sbjct: 119 FSPEDLMLVKGTPDNRRRFIDQEITQVDPSYDFYLKNYFKALRQRNKLL-KTYQDKNTLA 177 Query: 185 S----IEAQMAELGVKINIARVEMINA---LSSLIMEYV--QKENFPHIKLSLTGFLDGK 235 Q+ G KI + R E+I+ L+ LI + Q EN F D K Sbjct: 178 QHLPPWNQQLVHYGSKIILKREEVIHKIRLLARLIYRKITNQTENLELDYSPSLEFEDCK 237 Query: 236 FDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 F + L ++ L + + D R T IGPHR DLI +K GS G+Q+ Sbjct: 238 FREQLSGEKLAHKFLNTLNENLQSDIEKRTTSIGPHRDDLIFKINNKDAR-QFGSQGQQR 296 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 ++ + +A +I G PILLLD++ + LD++++ L + T+ Q F+T T Sbjct: 297 TTVLALKMAELEMIKGEKGEFPILLLDDVLSELDDNRKKHLLNL-TEGRVQTFVTSTSME 355 Query: 354 VFDS---LNETAKFMRISNHQALCI 375 F+ + ++ RI N +A+ + Sbjct: 356 DFNGDVDIKAKSQVFRIDNGEAVKL 380 >gi|258513370|ref|YP_003189592.1| DNA replication and repair protein RecF [Desulfotomaculum acetoxidans DSM 771] gi|257777075|gb|ACV60969.1| DNA replication and repair protein RecF [Desulfotomaculum acetoxidans DSM 771] Length = 376 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 102/360 (28%), Positives = 171/360 (47%), Gaps = 28/360 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK L I+ FRNY SL + IF+GDN GKTNILEAI FL GR FR + ++ Sbjct: 1 MRIKELFINNFRNYKSLHIKPKENLNIFIGDNAQGKTNILEAICFLLQGRSFRTSHEKEI 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 S S T + DIS+ + ++IN+ EL + Sbjct: 61 INFDSEQSKLKTELKAYNQNYSIDISL-----SRTKPKIIKINNSTTS-KPELATNFGTI 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------G 176 P I G ERRRFLD + + P+++ +++++++ RN LL E Sbjct: 115 VFTPDQLSIIKGSPKERRRFLDLELASFYPQYKYYFVNYQKVLLQRNNLLKELKEKKQAD 174 Query: 177 YFD--SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TG 230 FD W + Q+ G KI +AR+E++ L + + + KL++ + Sbjct: 175 TFDLLELW----DNQLISYGAKILMARMEILKKLIPMAQQIHNQITSDKEKLTIRYRSSL 230 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 L+ F + + +++ + + R+ D + +T +GPHR DL+ +K IT GS G Sbjct: 231 NLNSNFREEL--IYDQFREVILKNRQQDYLKGQTTVGPHRDDLVFLINNKNIT-DFGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ +++ + A L S P+LLLD++ LD ++ +F ++ Q+F+T T Sbjct: 288 QQRTIILTLKFAIINLWSCELNDVPVLLLDDVFFELDSKRQKYIFDLLNK-DVQVFITST 346 >gi|218659035|ref|ZP_03514965.1| recombination protein F [Rhizobium etli IE4771] Length = 115 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 59/108 (54%), Positives = 82/108 (75%) Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 +GPHR+DLIV + +KA+ STGEQK +LVG+ LAHARL+ N TG APILLLDEI+AH Sbjct: 7 MGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLLDEIAAH 66 Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 LDE +R ALF ++ +G Q FMTGTD+++F +L + A+F +++ + L Sbjct: 67 LDEGRRAALFDLIDGLGGQAFMTGTDRTMFSALADRAQFFTVADGKVL 114 >gi|313892256|ref|ZP_07825849.1| DNA replication and repair protein RecF [Dialister microaerophilus UPII 345-E] gi|313119394|gb|EFR42593.1| DNA replication and repair protein RecF [Dialister microaerophilus UPII 345-E] Length = 356 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 169/355 (47%), Gaps = 12/355 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + + RN+ ++ + D TIF G NG GKTN+LE+++ S G+ FR ++ Sbjct: 1 MKIKKFRLIQVRNFENIEIETDKNITIFTGKNGAGKTNLLESVNLASFGKSFRTNKDEEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G +I IK+ + + + +N+ I+ D L + Sbjct: 61 IKFDKNECTTILTFNSGKSN-HEIKIKISKTNGKQIF---LNENRIKNKD-LVGIFKTVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P ++ G +RRRFLD + I+PR+ I+++R ++ RN L Sbjct: 116 FNPDEMQLIKGNPQKRRRFLDMEISQINPRYYYEWINYKRAVQQRNAELKNAQIRGVKPQ 175 Query: 185 S--IEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A+ I R+E I L+ I + ++ +N ++KL K + +F Sbjct: 176 TDIWDMQIAKGAAYIVRKRIEAIQKLNESIEKTEERLTKNRENLKLYYIQKESKKNETNF 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E Y KL + R D +T +GPHR D++ K I+ +GS G+Q+ ++ I Sbjct: 236 DV--EWYIHKLLEKRHEDIKFCQTSVGPHRDDILFLLNGKDIS-KYGSQGQQRTAILSIK 292 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+ I TG P+LLLD++ + LD +++ LF V + Q MT T+K + Sbjct: 293 LSEMEFIKKETGEYPVLLLDDVGSELDGERKKVLFEYVKEKDIQTIMTMTEKPAY 347 >gi|258646401|ref|ZP_05733870.1| DNA replication and repair protein RecF [Dialister invisus DSM 15470] gi|260403802|gb|EEW97349.1| DNA replication and repair protein RecF [Dialister invisus DSM 15470] Length = 355 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/350 (28%), Positives = 172/350 (49%), Gaps = 24/350 (6%) Query: 14 EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP--S 71 E RN+ + T+ G NG GKTNI+E+I F S G+ FR ++ ++ R+ + Sbjct: 10 EIRNFEDFSIDPAENMTVLTGKNGTGKTNIIESIYFASVGKSFRTSNDEELIRLNKEEGT 69 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F+ V G+ +I IKL + + IN+ + EL R P + Sbjct: 70 ILLDFS-VRGV--THEIKIKLSRNKGKKI---LINETATKK-RELMGMFRTVLFTPDDLQ 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSWCSSIEAQ 189 + G RRRF+D + + PR+ ++ + R ++ RN E F ++ + Q Sbjct: 123 LIKGAPQNRRRFIDLEISQVSPRYYEEILRYGRAVQQRNAAFKEARFHGFTADVDVWDMQ 182 Query: 190 MAELGVKINIARVEMINALSSLI--MEYV---QKENFPHIKLSLTGFLDGKFDQSFCALK 244 +A+ I R+E I ++ ++ ME + +KE+ IK +G + +FD+ + Sbjct: 183 IAKGASYIVKKRMETIGKINEIVSSMESLLTDEKESIL-IKYRKSGNQEERFDEEW---- 237 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y +KL R+ DS T IGPHR DLI I+ ++GS G+Q+ ++ + LA Sbjct: 238 --YLEKLALSREEDSRFCHTSIGPHRDDLIFLMNGNDIS-SYGSQGQQRTAILSVKLAEL 294 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + TG P+LLLD++ + LD+++R+ALF + + Q +T D+S+ Sbjct: 295 EFVKKETGEYPLLLLDDVGSELDKERRDALFSYLIEKEIQTIITTADESL 344 >gi|24212703|ref|NP_710184.1| recombination protein RecF [Leptospira interrogans serovar Lai str. 56601] gi|51316470|sp|Q8FA32|RECF_LEPIN RecName: Full=DNA replication and repair protein recF gi|24193334|gb|AAN47202.1| recombination protein RecF [Leptospira interrogans serovar Lai str. 56601] Length = 365 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 103/348 (29%), Positives = 167/348 (47%), Gaps = 17/348 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I FRN+ L L FD++ FVGDNG GKTN+LEAI LS + FR + +++ R Sbjct: 3 LKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125 GS ++ F R + + L + +++ SV R L+ N I+ +L L Sbjct: 63 WGSENY---FLRGKIKDNLKESVLEIGFTSKPSVKRKLKFNQEEIKKRTDLIGKFITVLL 119 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I G ERR+F+D + + DP + ++++ ++++ RN LL G D S S Sbjct: 120 TPMDLKIIEGGPAERRKFIDAFISSFDPFYLESLLEYNKILKHRNALLKSGNPDISHLSI 179 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCAL 243 + ++ E G+ I R E++ L+S + K L+G DG + Sbjct: 180 WDKKIVEKGIFILNKRREVVLELNSFYRVNLDK---------LSGGKDGLELIYKPNVKD 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++E+ +KL D T +G HR DL + + IT GS G+++ ++ + A Sbjct: 231 QDEFLEKLNHNLSRDLRLGYTSVGIHRDDLFIGSDQRDIT-EFGSQGQKRSTVIALKAAT 289 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 N P+LL+D++ LD +R +V G Q F T TD Sbjct: 290 FNYYKNILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTD 336 >gi|116326858|ref|YP_796578.1| recombinational DNA repair ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329805|ref|YP_799523.1| recombinational DNA repair ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282419|sp|Q04WF5|RECF_LEPBJ RecName: Full=DNA replication and repair protein recF gi|122285291|sp|Q056V0|RECF_LEPBL RecName: Full=DNA replication and repair protein recF gi|116119602|gb|ABJ77645.1| Recombinational DNA repair ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123494|gb|ABJ74765.1| Recombinational DNA repair ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 365 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/347 (28%), Positives = 170/347 (48%), Gaps = 15/347 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FR+Y L L F+++ FVGDNG GKTN+LEAI LS + FR + +++ R Sbjct: 3 LKHLTLQNFRSYEELSLDFNSRLIFFVGDNGEGKTNLLEAICMLSWLKSFRESEDSNLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 GS ++F +++G + + + + T R L+ N ++ +L L Sbjct: 63 WGSENYFLR-GKIKGDQKESVLEVGF-TAKPTVKRKLKFNQEEVKKRTDLIGKFITVLLT 120 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +I G ERR+F+D + + DP + ++++ ++++ RN LL G D+S S Sbjct: 121 PMDLKIIEGGPAERRKFIDAFISSFDPFYLECLLEYNKILKHRNALLKTGISDASHLSIW 180 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ E GV I R E++ L+S + K + +L + + K K+E Sbjct: 181 DRKLIEKGVLILNKRKEIVFGLNSFYQPNLNKLSGGKDELEMIYGPNVK-------DKDE 233 Query: 247 YAKKLFDGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + +KL GR + R T +G HR DL + DK GS G+++ ++ + A Sbjct: 234 FVEKL--GRNLGKDLRLGYTSVGIHRDDLFIG-ADKRDITEFGSQGQKRSTVIALKAATF 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 N P+LL+D++ LD +R +V + G Q F T TD Sbjct: 291 NYYRNVLDTMPVLLIDDVIRELDVKRREYFVDLVINAG-QAFFTTTD 336 >gi|24753765|gb|AAN64013.1|AF434658_10 recombination protein RecF [Leptospira interrogans] Length = 365 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 103/348 (29%), Positives = 167/348 (47%), Gaps = 17/348 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I FRN+ L L FD++ FVGDNG GKTN+LEAI LS + FR + +++ R Sbjct: 3 LKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125 GS ++ F R + + L + +++ SV R L+ N I+ +L L Sbjct: 63 WGSENY---FLRGKIKDNLKESVLEIGFTSKPSVKRKLKFNQEEIKKRTDLIGKFITVLL 119 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I G ERR+F+D + + DP + ++++ ++++ RN LL G D S S Sbjct: 120 TPMDLKIIEGGPAERRKFIDAFISSFDPFYLESLLEYNKILKHRNALLKSGNPDISHLSI 179 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCAL 243 + ++ E G+ I R E++ L+S + K L+G DG + Sbjct: 180 WDKKIVEKGIFILNKRREVVLELNSFYKVNLDK---------LSGGKDGLELIYKPNVKD 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++E+ +KL D T +G HR DL + + IT GS G+++ ++ + A Sbjct: 231 QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIGTDQRDIT-EFGSQGQKRSTVIALKAAT 289 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 N P+LL+D++ LD +R +V G Q F T TD Sbjct: 290 FNYYKNILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTD 336 >gi|328956386|ref|YP_004373772.1| DNA replication and repair protein RecF [Carnobacterium sp. 17-4] gi|328672710|gb|AEB28756.1| DNA replication and repair protein RecF [Carnobacterium sp. 17-4] Length = 373 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 175/378 (46%), Gaps = 26/378 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++S +RNY ++F +F+G+N GKT+++EAI L+ R R A+ + R Sbjct: 3 LKEIHLSNYRNYEHAEVIFSKGINVFLGENAQGKTSLMEAIYVLAMARSHRTANDKETIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + FARV G + S LE + + + N + + + E +L + Sbjct: 63 -----WEQEFARVSGRIQKKNTSFPLEISISKKGKKAKFNHLEQKKLSEYIGNLNVILFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182 P + G RR+FLD + + P + ++ ++ L++ RN L + D ++ Sbjct: 118 PEDLSLVKGSPSVRRKFLDMEMGQMSPIYLHHLVQYQHLLKQRNSYLKQLSLKKVKDLTF 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI----MEYVQKENFPHI----KLSLTGFLDG 234 + Q+AE G I + R I L + E +++ I L +T D Sbjct: 178 LDILTEQLAEFGAAILVERFSFIKKLENWAKPVHAEISRQKEILEIGYSCSLKITNETDK 237 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 K Q + L Y + GR+ + R T+ GPHR DL + + +GS G+Q+ Sbjct: 238 K--QIYSDLMNAYTQ----GRQRELEQRTTIFGPHRDDLKFSVNGRNVQ-TYGSQGQQRT 290 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KS 353 + + LA L+ TG P+LLLD++ + LD++++ L + + + Q F+T T Sbjct: 291 TALSVKLAEIDLMKEMTGEYPVLLLDDVLSELDDERQTHLLKAIQN-KVQTFLTTTSLDG 349 Query: 354 VFDSLNETAKFMRISNHQ 371 + +++ ET K I N Q Sbjct: 350 IKENMLETPKIFLIDNGQ 367 >gi|58584386|ref|YP_197959.1| recombination protein F [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418702|gb|AAW70717.1| Recombinational DNA repair ATPase, RecF [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 356 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 104/358 (29%), Positives = 170/358 (47%), Gaps = 17/358 (4%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M IK L +S FRN+ + L D + +G NG+GKTNILEAIS L+ G ++A Sbjct: 1 MAAHCYIKKLKLSNFRNHLNFELDSDDSSVVIIGKNGIGKTNILEAISLLAKSNGMKKAK 60 Query: 61 YADV-TRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVVDELNK 118 +++ R + + + G AD+ SI + ++ + +QI + L + Sbjct: 61 ASEMQNRFSNKDWAVHYDFFNG----ADLNSIGIAKSFNKKL--IQIGGKMQSSYSSLYR 114 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + WL+P MD I +R +FLDR+V + + + + + R R RLL E Sbjct: 115 ISNVIWLIPQMDYILLNSPSDRLKFLDRIVSLFEENYACYYMRYRKAKRERGRLLRENIL 174 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + SW SS+E MA V I R+ ++ L I Y + FP + L L Sbjct: 175 NKSWLSSLENIMAVNAVNILDMRLSVLKMLQDTINSY-STQFFPKVSLKFNSQL------ 227 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA-ITIAHGSTGEQKVVLV 297 + + + +L + R+ DS++ R + V +C + + I STGEQK++L+ Sbjct: 228 TLSDTAKYFQNRLRENREKDSLTGRITFCVNNDKFQV-FCQRRDLPINLCSTGEQKLLLL 286 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 I L+ + AP+LLLD+I +HLD+ R L + I Q ++T D++ F Sbjct: 287 SIILSSVKARCIHYNKAPLLLLDDIMSHLDKYYRKVLIEEMLSIRCQAWITDVDQNNF 344 >gi|226326149|ref|ZP_03801667.1| hypothetical protein COPCOM_03968 [Coprococcus comes ATCC 27758] gi|225205691|gb|EEG88045.1| hypothetical protein COPCOM_03968 [Coprococcus comes ATCC 27758] Length = 361 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 99/353 (28%), Positives = 160/353 (45%), Gaps = 20/353 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + ++RNY L + FD IF GDN GKTNILE + + R D+ R Sbjct: 3 IKSLKLKDYRNYEILNIEFDHATNIFYGDNAQGKTNILEGVYLSGTTKSHRGTKDRDLIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + T G+ D+ +K S + + IN V IR EL + Sbjct: 63 FGQDEAHIETVIEKNGVPWQIDMHLK-----KNSPKGIAINKVPIRRASELFGLTNFVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + +D + + ++ R + RNRLL + Y+ + Sbjct: 118 SPEDLNIIKNGPAERRRFMDLELSQLDKVYLSDLANYNRTLNQRNRLLKDAYYRDDILDT 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ Q+ + G KI R+ I ++++I + K ++ L+ ++ A Sbjct: 178 LDVWDMQLVQYGEKIIQRRLRFIEEVNAIIGDIHHKLTGGRERIGLS------YEPGCGA 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301 L E A L R+ D + T +GPHR D+ + I I GS G+Q+ + + L Sbjct: 232 LSLEAA--LEKNRERDIRMKSTSVGPHRDDIC--FMAGGIDIRRFGSQGQQRTAALSLKL 287 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + L+ P+LLLD++ + LD+ ++N L + DI + I TG D+ V Sbjct: 288 SEIELVRQIIKDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGLDEFV 340 >gi|223940285|ref|ZP_03632143.1| DNA replication and repair protein RecF [bacterium Ellin514] gi|223891052|gb|EEF57555.1| DNA replication and repair protein RecF [bacterium Ellin514] Length = 361 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 97/352 (27%), Positives = 169/352 (48%), Gaps = 19/352 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRNY L + F + +GDN GKTNILEAI ++ R FR + + Sbjct: 1 MHLAHLRLRDFRNYPRLDVDFAPGFQVLLGDNAQGKTNILEAIYLMATLRSFRGVGGSQM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G +F V G D IK+ + R L +++ IR + + +R+ Sbjct: 61 VRHGQKGYFVGGKVV----GQGDHEIKMYWSP--AERKLSLDNQPIRKLADYFGAIRVVI 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 ++ G S RRRF+D ++ P + + + +R RN LL + D S Sbjct: 115 FCTEDLQLVKGTSRARRRFVDLLLSQTHPTYLPLLQRYASALRSRNALLKQRVQDESALE 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 S A++ +LG + R E+I LS L ++ + +L L + ++K Sbjct: 175 SFTAELVKLGNDLIRMRHELIPKLSPLARLAYRRISNDAEELRL---------EYQPSVK 225 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +++A +L R + R TLIGPHR ++ + D++ GS G+++ + + + +A A Sbjct: 226 KDFAVELAQTRARERTYRSTLIGPHRDEVQLLLNDRS-AAQFGSEGQKRTLAIALKMAQA 284 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---DIGSQIFMTGTDKS 353 ++ G APILL+D+I LD +R+ L ++ Q+FMT T+++ Sbjct: 285 EYLTGLHGSAPILLIDDIMGELDAKRRSGLLPLLERAHHTRGQVFMTCTEEN 336 >gi|220927463|ref|YP_002504372.1| DNA replication and repair protein RecF [Clostridium cellulolyticum H10] gi|254790470|sp|B8I3R5|RECF_CLOCE RecName: Full=DNA replication and repair protein recF gi|219997791|gb|ACL74392.1| DNA replication and repair protein RecF [Clostridium cellulolyticum H10] Length = 372 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 108/381 (28%), Positives = 183/381 (48%), Gaps = 40/381 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + +RN+ + R++F + IF GDNG GKTNILEAI + GR R + +++ + Sbjct: 3 VKNLVLENYRNHTNTRILFSDRFNIFYGDNGQGKTNILEAIYLCASGRSHRTSRDSELIK 62 Query: 67 IGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + FS V GL DI I + ++ IND+ I+ + L +L Sbjct: 63 FGCEN-FSIAVHVSKTGGLDKDIEISYYENQKKQIK---INDIPIKKIGALMGNLYAVLF 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + I P + + ++++ RN LL + + Sbjct: 119 SPEDLFIVKQGPTERRRFVDITLSQIKPSYFYNLQQMSKILKQRNTLLKNISSNPKLMDT 178 Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SF- 240 ++ ++AE+ I AR LS + EN H FL GK ++ SF Sbjct: 179 VDIWNMRLAEVAAAIIKARRTFSIMLSGM------AEN-QH------NFLTGKSEKISFD 225 Query: 241 --CALK------EEYAKKLFDGRKMDSMSR-----RTLIGPHRSDLIVDYCDKAITIAHG 287 C+ + E +KL+ + SM R T +GPHR D + DK++ + +G Sbjct: 226 YRCSFQISGQDDTEQIEKLYLVQLEKSMQRDIVLGYTTVGPHRDDYDIMINDKSLKL-YG 284 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S G+Q+ ++ + +A L+ T P+LLLD++ + LD++++ L + ++ Q F+ Sbjct: 285 SQGQQRSAVLSLKIAEIELVKKATNQYPVLLLDDVMSELDKNRQKYLMDSIKEV--QTFI 342 Query: 348 TGTDKSVFDS-LNETAKFMRI 367 T T+K F + L+ + F +I Sbjct: 343 TCTNKEHFGNLLSANSNFFKI 363 >gi|260437692|ref|ZP_05791508.1| DNA replication and repair protein RecF [Butyrivibrio crossotus DSM 2876] gi|292809918|gb|EFF69123.1| DNA replication and repair protein RecF [Butyrivibrio crossotus DSM 2876] Length = 361 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 97/360 (26%), Positives = 168/360 (46%), Gaps = 24/360 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ FRNY + ++ FD I GDN GKTNILEAI + + + +++ Sbjct: 3 IKSIDLQNFRNYETEKIEFDENTNILYGDNAQGKTNILEAIFLSGTSKSHKGSKDSEIIN 62 Query: 67 -IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + S T + ++ DI I R ++S + + +N V I+ EL + I + Sbjct: 63 FLKDESHIKTVISKKEIDYRIDIHI----RKNKS-KGIAVNGVPIKKSSELYGIVNIVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I RRRF+D + +D + +I++ + + RNRLL + YF + Sbjct: 118 SPEDLNIIKAGPFARRRFMDMEMCQLDKIYVNSLINYNKAIDQRNRLLKDIYFSPYLEDT 177 Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQS 239 ++ + + G +I R IN L+ +I + I +L+G + K++ Sbjct: 178 MDIWDENILKYGSEIIRKRESFINELNEIIGK---------IHFTLSGGRENIVIKYEP- 227 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 C +EE+ L R D + T GPHR D+I D +GS G+Q+ + + Sbjct: 228 -CVKEEEFESVLKSTRDRDKKQKSTCSGPHRDDIIF-LIDNVDIRKYGSQGQQRTAALSL 285 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA ++ G PILLLD++ + LD ++N L + +I + + TG D+ + + N Sbjct: 286 KLAEIEIVKKQIGDTPILLLDDVLSELDSSRQNYLLNSIHNIQTIMTCTGLDEFINNRFN 345 >gi|153854252|ref|ZP_01995551.1| hypothetical protein DORLON_01545 [Dorea longicatena DSM 13814] gi|149753027|gb|EDM62958.1| hypothetical protein DORLON_01545 [Dorea longicatena DSM 13814] Length = 374 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 104/358 (29%), Positives = 162/358 (45%), Gaps = 30/358 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + FRNY L + FD IF G+N GKTNILEA+ + R + D+ Sbjct: 12 LKVNSLKLKNFRNYDLLNVEFDGSTNIFYGNNAQGKTNILEAVYLSGTTKSHRGSKDRDM 71 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S T G+ D+ +K S + + IN + IR EL + + Sbjct: 72 IRFGEDESHIETVVEKNGISYQIDMHLK-----KNSPKGIAINKMPIRKASELFGIVNLV 126 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFD 179 + P I ERRRF+D + +D + + ++ R++ RN LL E G D Sbjct: 127 FFSPEDLNIIKNGPAERRRFIDLELSQLDKVYLNNLSNYNRIVNQRNHLLKELSFGGKKD 186 Query: 180 SSWCSSI-EAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENFPHIKLSLTGFLD 233 S I E QM + G ++ R E + ++ +I + Q KE+ I TG D Sbjct: 187 LSDTLEIWELQMVQYGERLIARRKEFVEQINGIIAKIHQRLTGGKESLKIIYEPSTG--D 244 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 F+Q+ +E D + T +GPHR D+ D I +GS G+Q+ Sbjct: 245 LPFEQALNRYRER-----------DLRMKSTTVGPHRDDIGFLIGDMDIR-KYGSQGQQR 292 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + L+ L+ T PILLLD++ + LD+ ++N L + DI + I TG + Sbjct: 293 TAALSLKLSEIELVKLATHDTPILLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVE 350 >gi|225570328|ref|ZP_03779353.1| hypothetical protein CLOHYLEM_06425 [Clostridium hylemonae DSM 15053] gi|225160860|gb|EEG73479.1| hypothetical protein CLOHYLEM_06425 [Clostridium hylemonae DSM 15053] Length = 361 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 100/354 (28%), Positives = 163/354 (46%), Gaps = 18/354 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L + FRNY L+L FD IF GDN GKTNILE++ + R D+ Sbjct: 1 MKIKSLKLKSFRNYDFLKLEFDNATNIFYGDNAQGKTNILESVYLSGTTKSHRGTKDRDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G S T G+ D+ +K S + + IN + IR EL + I Sbjct: 61 VQFGKEESHIETVVEKNGITYQIDMHLK-----KNSPKGIAINKIPIRKASELFGIINIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P I ERRRF+D + +D + + ++ R++ RN LL + + Sbjct: 116 FFSPEDLNIIKNGPSERRRFIDLELSQLDKVYLNNLSNYNRIVNQRNHLLKDITQQRNLM 175 Query: 184 SSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 ++ E Q+ + G KI R + + ++ +I +K +++L ++ S Sbjct: 176 ETLDVWEIQLIQYGNKIIERRKQFVKEINKIISNIHKKLTGEKEEINLI------YEPSV 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L E A L R+ D + T +GPHR D+ D I GS G+Q+ + + Sbjct: 230 GNLTFEQA--LAKNRERDMRIKSTSVGPHRDDICFMVGDLDIR-RFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 L+ L+ + P+LLLD++ + LD+ ++N L + DI + I TG D+ V Sbjct: 287 LSEIELVKQSIHDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVDEFV 340 >gi|160893408|ref|ZP_02074193.1| hypothetical protein CLOL250_00957 [Clostridium sp. L2-50] gi|156864803|gb|EDO58234.1| hypothetical protein CLOL250_00957 [Clostridium sp. L2-50] Length = 360 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 99/352 (28%), Positives = 169/352 (48%), Gaps = 24/352 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ LNI+ +RNY L + FD I GDN GKTNILE+I + + R + ++ + Sbjct: 3 VESLNINNYRNYDELFITFDKNTNILYGDNAQGKTNILESIYMAATTKSHRGSKDREIIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + + +DIS I + R +++ + + I+ + IR EL L + + Sbjct: 63 IGEEE-----SHIRLCIKKSDISHRIDMHLRKNKN-KGVAIDGLPIRRTTELFGLLNVIF 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I ERRRFLD + + + + + + +++ RN LL + ++ S Sbjct: 117 FSPEDLSIIKNGPSERRRFLDLELCQLSRLYYQNLSSYSKILNQRNNLLKQIVYNKSLMD 176 Query: 185 SIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 +++ Q+ + G K+ R I L++LI E K KL + +D++ Sbjct: 177 TLDVWNIQLVDYGKKVIKERQNFIMMLNNLIGEIHSKLTSGKEKLEII------YDKNVS 230 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI--VDYCDKAITIAHGSTGEQKVVLVGI 299 ++E+ K L D +D T GPHR D++ ++ D GS G+Q+ V + + Sbjct: 231 --EDEFEKVLADKVHVDLNYMSTQTGPHRDDIMFMINGIDAR---RFGSQGQQRTVALSL 285 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +A +L+ N PILLLD++ + LD +R AL + DI + I TG D Sbjct: 286 KIAEIKLVKNIINDNPILLLDDVMSELDSSRREALLEEIKDIQTIITCTGYD 337 >gi|183219430|ref|YP_001837426.1| DNA replication and repair protein RecF [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909576|ref|YP_001961131.1| recombinational DNA repair ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226737810|sp|B0S909|RECF_LEPBA RecName: Full=DNA replication and repair protein recF gi|226737811|sp|B0SK33|RECF_LEPBP RecName: Full=DNA replication and repair protein recF gi|167774252|gb|ABZ92553.1| Recombinational DNA repair ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777852|gb|ABZ96150.1| DNA replication and repair protein RecF [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 367 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 97/348 (27%), Positives = 167/348 (47%), Gaps = 17/348 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + I FRN+ +L F ++ F+G+NG GKTN+LE+IS LS + FR + + R Sbjct: 3 LKKIYIKNFRNHEETQLTFKSRLVFFIGNNGEGKTNLLESISLLSYLKSFRESDQNQLLR 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 S +F EG E L + I+ + L++N + + + + R + Sbjct: 63 WDTSDTFIRAEFESEGNEYLFEYGIE---HSQTKRKKLKVNGEEFKKISDYVGYFRSIVM 119 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ++ERRRFLD + + + + +++I++ERL++ RN L + Sbjct: 120 SPPDILIIEDGNVERRRFLDAFISSTNRYYLKQLIEYERLIKQRNAALKKENASDREIGI 179 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCAL 243 + + E +I R + I +L+ F L L+ D F + Sbjct: 180 WDEPIIEHDSEIREIRTKTIQSLAGY---------FHQNLLQLSSGKDPYFLTYKPNITS 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KEE+ +KL D + D T G HR L + + DK ++ GS G+++ ++ + A Sbjct: 231 KEEHKQKLIDNLRKDKAIGYTSCGNHRDTLPIGFDDKDLS-GFGSQGQKRSAVIALKTAC 289 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 ++I +TTG AP+LL+D+I LD +R ++++ G Q F T TD Sbjct: 290 FQMIRDTTGEAPVLLIDDIIRELDVKRREYFVNLISECG-QAFFTTTD 336 >gi|126697570|ref|YP_001086467.1| DNA replication and repair protein [Clostridium difficile 630] gi|254977346|ref|ZP_05273818.1| DNA replication and repair protein [Clostridium difficile QCD-66c26] gi|255094676|ref|ZP_05324154.1| DNA replication and repair protein [Clostridium difficile CIP 107932] gi|255102903|ref|ZP_05331880.1| DNA replication and repair protein [Clostridium difficile QCD-63q42] gi|255308723|ref|ZP_05352894.1| DNA replication and repair protein [Clostridium difficile ATCC 43255] gi|255316430|ref|ZP_05358013.1| DNA replication and repair protein [Clostridium difficile QCD-76w55] gi|255519090|ref|ZP_05386766.1| DNA replication and repair protein [Clostridium difficile QCD-97b34] gi|255652273|ref|ZP_05399175.1| DNA replication and repair protein [Clostridium difficile QCD-37x79] gi|260681773|ref|YP_003213058.1| DNA replication and repair protein [Clostridium difficile CD196] gi|306521987|ref|ZP_07408334.1| DNA replication and repair protein [Clostridium difficile QCD-32g58] gi|123363673|sp|Q18C86|RECF_CLOD6 RecName: Full=DNA replication and repair protein recF gi|115249007|emb|CAJ66818.1| DNA replication and repair protein RecF [Clostridium difficile] gi|260207936|emb|CBA60047.1| DNA replication and repair protein [Clostridium difficile CD196] Length = 371 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 177/364 (48%), Gaps = 17/364 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + FRNY L L F+ + + VG NG GKTNI+E+I LS G+ FR ++ Sbjct: 1 MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEM 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R S + + +F++ L ++ I +D + +R IN V ++ + EL +L + Sbjct: 61 VRFNSENLYIGGSFSKYNKY-SLIELII---GKDKKGIR---INKVPLQKIQELLGNLNV 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 P R+ ERR F+D+ + I P++ + + ++ + + R+R+L + D + Sbjct: 114 VIFSPEDLRLVKEGPKERRAFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKNIHVDEAL 173 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + +A+ G I I R + I ++++ M + + ++ + + Sbjct: 174 LDVYDDTLAKYGSYIYILRRDFIKKIANISENMHMNLTNGVERLSIRYKNQINITDEDTI 233 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + ++ KL R D S+ T G H+ DL + + + GS G+Q+ + + Sbjct: 234 DTVYNKFLAKLSSNRPNDIESKTTRYGIHKDDLNI-FINDLDARLFGSQGQQRTASISLK 292 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KSVFDS 357 L+ LI N P+L+LD++ + LDE ++ L ++++ Q+F+T + K +FD Sbjct: 293 LSEIELIKNEVEEYPVLILDDVFSELDEARQKLLVNNLSNV--QMFITSAEVSHKKIFDE 350 Query: 358 LNET 361 N T Sbjct: 351 KNVT 354 >gi|255657642|ref|ZP_05403051.1| DNA replication and repair protein [Clostridium difficile QCD-23m63] gi|296452677|ref|ZP_06894368.1| recombination protein F [Clostridium difficile NAP08] gi|296880070|ref|ZP_06904039.1| recombination protein F [Clostridium difficile NAP07] gi|296258459|gb|EFH05363.1| recombination protein F [Clostridium difficile NAP08] gi|296428937|gb|EFH14815.1| recombination protein F [Clostridium difficile NAP07] Length = 371 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 176/364 (48%), Gaps = 17/364 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + FRNY L L F+ + + VG NG GKTNI+E+I LS G+ FR ++ Sbjct: 1 MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEM 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R S + + +F++ L ++ I +D + +R +N V ++ + EL +L + Sbjct: 61 VRFNSENLYIGGSFSKYNKY-SLIELII---GKDKKGIR---VNKVPLQKIQELLGNLNV 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 P R+ ERR F+D+ + I P++ + + ++ + + R+R+L + D + Sbjct: 114 VIFSPEDLRLVKEGPKERRTFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKSIHVDEAL 173 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + +A G I I R + I ++S+ M + + ++ + + Sbjct: 174 LDVYDDTLARYGSYIYILRRDFIKKIASISENMHMNLTNGVERLSIRYKNQINITDEDTI 233 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + ++ KL R D S+ T G H+ DL + + + GS G+Q+ + + Sbjct: 234 DTVYNKFLAKLSSNRPNDIESKTTRYGIHKDDLNI-FINDLDARLFGSQGQQRTASISLK 292 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KSVFDS 357 L+ LI N P+L+LD++ + LDE ++ L ++++ Q+F+T + K +FD Sbjct: 293 LSEIELIKNEVEEYPVLILDDVFSELDEARQKLLVNNLSNV--QMFITSAEISHKKIFDE 350 Query: 358 LNET 361 N T Sbjct: 351 KNVT 354 >gi|45655917|ref|YP_000003.1| DNA repair and genetic recombination protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|51316280|sp|Q72WD4|RECF_LEPIC RecName: Full=DNA replication and repair protein recF gi|45599150|gb|AAS68640.1| DNA repair and genetic recombination protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 365 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 102/348 (29%), Positives = 166/348 (47%), Gaps = 17/348 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I FRN+ L L FD++ FVGDNG GKTN+LEAI LS + FR + +++ R Sbjct: 3 LKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125 GS ++ F R + L + +++ SV R L+ N I+ +L L Sbjct: 63 WGSENY---FLRGKIKNNLKESVLEIGFTSKPSVKRKLKFNQEEIKKRTDLIGKFITVLL 119 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I G ERR+F+D + + DP + ++++ ++++ RN LL G D S S Sbjct: 120 TPMDLKIIEGGPAERRKFIDAFISSFDPFYLEFLLEYNKILKHRNALLKSGNLDISHLSI 179 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCAL 243 + ++ E G+ I R E++ L+S + K L+G DG + Sbjct: 180 WDKKIVEKGIFILNKRREVVLELNSFYRVNLDK---------LSGGKDGLELIYKPNVKD 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++E+ +KL D T +G HR DL + + IT GS G+++ ++ + A Sbjct: 231 QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIGTDQRDIT-EFGSQGQKRSTVIALKAAT 289 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + P+LL+D++ LD +R +V G Q F T TD Sbjct: 290 FNYYKDILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTD 336 >gi|150014896|ref|YP_001307150.1| recombination protein F [Clostridium beijerinckii NCIMB 8052] gi|189039620|sp|A6LPB4|RECF_CLOB8 RecName: Full=DNA replication and repair protein recF gi|149901361|gb|ABR32194.1| DNA replication and repair protein RecF [Clostridium beijerinckii NCIMB 8052] Length = 367 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/373 (25%), Positives = 173/373 (46%), Gaps = 20/373 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +N+ +RNY L + +FVGDN GKTNILE++ + + + R + ++ Sbjct: 3 VKNINLLNYRNYKKLSVELTENVNVFVGDNAQGKTNILESVYYCAFAKSHRTSKDKELIN 62 Query: 67 I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 S ++ S ++ DI+I RD + + +++N++ + + EL + Sbjct: 63 WENSTAYISLLIGKNRLDKKIDINI---LRDGK--KAIKVNNIKVNKIGELFGIFNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P ++ RRR LD + ++P + ++ + +++ RN LL F Sbjct: 118 SPEDLKVIKEAPSLRRRLLDMELSQVNPNYYFNLVQYNKVLGERNILLKSRSFSEDILDV 177 Query: 186 IEAQMAELGVKINIARVEMINALS---SLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240 + Q+++ I R+E IN ++ +I + KE +GKF Sbjct: 178 YDIQLSKYADYIISKRLEYINKINFYGDIIHREITSGKEEINFKYNCTVNLENGKF---- 233 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K+ Y KKL D + D T +GPHR D V + + T GS G+Q+ ++ + Sbjct: 234 ---KDNYLKKLKDNIQKDREKGLTSVGPHRDDFSV-FINNIDTKIFGSQGQQRTSILTMK 289 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 A ++I TG P+LLLD++ + LD +++ + R + DI + I G + + D L++ Sbjct: 290 FASLKIIREITGEYPVLLLDDVLSELDLNRKKYILRSIKDIQTIITCAGIE-DLNDYLDD 348 Query: 361 TAKFMRISNHQAL 373 K +SN Q L Sbjct: 349 KVKIFNVSNGQIL 361 >gi|332798027|ref|YP_004459526.1| DNA replication and repair protein recF [Tepidanaerobacter sp. Re1] gi|332695762|gb|AEE90219.1| DNA replication and repair protein recF [Tepidanaerobacter sp. Re1] Length = 364 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 107/361 (29%), Positives = 165/361 (45%), Gaps = 44/361 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN+ L L F IF GDN GKTN+LEAI F++ R R +V R Sbjct: 6 LRLYDFRNFLELDLEFKNGINIFYGDNAQGKTNLLEAIYFITELRATRAFREQEVIRYDQ 65 Query: 70 P-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P FST A DI DR V + ++ + NK R S Sbjct: 66 PLAFLKGLFSTKA--------GDI--------DRQVTIYRNQKKEVKEGE--NKKSRWSE 107 Query: 125 LVPSMDRIF---------SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L PS+ ++ G RRRF+D +++ I P + + ++R++ RN LL Sbjct: 108 LDPSISAVYFSPEDIDLVKGEPSLRRRFIDNLIYRIRPSFYKYLQGYQRVLTQRNTLLKT 167 Query: 176 GYFDSSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 +++ Q++ELG ++ R++M+ +SSL +Y + F H + L Sbjct: 168 IKIKPGMTKTLDPWDEQLSELGSQLINERLKMLQRISSLSQDYFK--TFTHKRNDLRISY 225 Query: 233 DGKFDQSFCAL-KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTG 290 + D S L K +Y KL R+ D T +GPHR D +D+ I H S G Sbjct: 226 RSEIDFSNPELIKADYKNKLILNREKDINRSFTSVGPHRDD--IDFFIDGKNIKHYASQG 283 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q++ ++ + A L+ G PILLLD++ + LD +R I+ Q+F+T T Sbjct: 284 QQRLTVLCLMFAQRNLLYTEKGEYPILLLDDVMSELDIHRRQL---ILGQENHQVFITTT 340 Query: 351 D 351 D Sbjct: 341 D 341 >gi|125974859|ref|YP_001038769.1| DNA replication and repair protein RecF [Clostridium thermocellum ATCC 27405] gi|256003885|ref|ZP_05428872.1| DNA replication and repair protein RecF [Clostridium thermocellum DSM 2360] gi|281418686|ref|ZP_06249705.1| DNA replication and repair protein RecF [Clostridium thermocellum JW20] gi|166220707|sp|A3DHZ7|RECF_CLOTH RecName: Full=DNA replication and repair protein recF gi|125715084|gb|ABN53576.1| DNA replication and repair protein RecF [Clostridium thermocellum ATCC 27405] gi|255992223|gb|EEU02318.1| DNA replication and repair protein RecF [Clostridium thermocellum DSM 2360] gi|281407770|gb|EFB38029.1| DNA replication and repair protein RecF [Clostridium thermocellum JW20] gi|316939070|gb|ADU73104.1| DNA replication and repair protein RecF [Clostridium thermocellum DSM 1313] Length = 369 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 99/360 (27%), Positives = 167/360 (46%), Gaps = 26/360 (7%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRNY + F I G N GKTNI+EA+ + GR R + ++ I Sbjct: 8 LKNFRNYKDETIKFSKNLNIIYGQNAQGKTNIIEAVFLCASGRSHRTSKDTELVNIDGTG 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 FS +E EG I I E + V+ IN++ ++ + L +L P Sbjct: 68 -FSVLLDLESSEGRKKIEIDYECGKKKVVK---INEIPLKKIGNLMGNLLAVIFSPEDIL 123 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA--- 188 I ERRRF+D + + P + + + +++ RN LL E + + ++E Sbjct: 124 IIKEGPSERRRFIDITLCQLKPSYFYDLQQYNKVLSQRNMLLKEIQYKRNLLDTLEVWDY 183 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSF------- 240 +MAEL +I R E I L + + H+KL+ + ++ K+ S Sbjct: 184 KMAELSSRIMTTRSEFIKRLCEISKKI-------HLKLTDGSEIMEIKYSPSVDLHDLSN 236 Query: 241 -CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +K E+ ++L R ++ TLIGPHR D ++ + + GS G+Q+ L+ + Sbjct: 237 PSEIKNEFIRQLNSIRDIELKRCVTLIGPHRDDYEMELNGLNLKM-FGSQGQQRTSLLSL 295 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA +I + T P+LLLD++ + LD +R L + ++ Q F+T TDK +F++ N Sbjct: 296 KLAEIEIIKSETDEDPVLLLDDVMSELDFKRREFLLENIRNV--QTFITCTDKELFENRN 353 >gi|163849398|ref|YP_001637442.1| DNA replication and repair protein RecF [Chloroflexus aurantiacus J-10-fl] gi|222527396|ref|YP_002571867.1| DNA replication and repair protein RecF [Chloroflexus sp. Y-400-fl] gi|189039618|sp|A9WDD4|RECF_CHLAA RecName: Full=DNA replication and repair protein recF gi|254790468|sp|B9LH68|RECF_CHLSY RecName: Full=DNA replication and repair protein recF gi|163670687|gb|ABY37053.1| DNA replication and repair protein RecF [Chloroflexus aurantiacus J-10-fl] gi|222451275|gb|ACM55541.1| DNA replication and repair protein RecF [Chloroflexus sp. Y-400-fl] Length = 392 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 104/377 (27%), Positives = 175/377 (46%), Gaps = 32/377 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + +FRNY L L T+F G N GKT++LEAI +L+ R R +S ++ R Sbjct: 3 VHHLFLRDFRNYRRLDLALAPATTLFYGPNAAGKTSLLEAIFYLATTRSPRLSSDRELVR 62 Query: 67 ------IGSPSFFSTFARVEGMEGLADISIKLETRDDR-------SVRCLQINDVVIRVV 113 G+P F A VE G + + ++ R D + + ++I+ R + Sbjct: 63 WDAVGEAGTPPFARIAADVERRIGPVRLEVLVQRRADDDGQPLNGAQKLVRIDKRPARAI 122 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 D L LR+ P+ + G ERRR+LD + +DP + R + +++++ RN LL Sbjct: 123 D-LIGQLRVVLFTPTDLTLVDGPPAERRRYLDITLSQLDPHYVRTLAHYQKILLQRNSLL 181 Query: 174 --------TEGYFDSS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 + D+ W + A L + A VE+ + L E E+ Sbjct: 182 RAWREQRRVPRHVDAELAYWDQELAAAGGYLLAERLRAIVELNDLAGPLYQEMSGGEDRL 241 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKA 281 I+ + + L D A + A F ++ D ++R +TL GPHR DLI + Sbjct: 242 QIEYAASCDLGTARDAGGLAERLLLA---FAAQRSDELARGQTLCGPHRDDLI--FTVAG 296 Query: 282 ITIA-HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 I + +GS G+Q+ + + + + A L+ +G AP+LLLD++ + LD +R L ++ Sbjct: 297 INLGRYGSRGQQRSIALALKIGEAGLMRRRSGEAPVLLLDDVLSELDAQRRAHLLALIHH 356 Query: 341 IGSQIFMTGTDKSVFDS 357 Q +T TD S F + Sbjct: 357 PDQQTLLTATDLSDFSA 373 >gi|257871392|ref|ZP_05651045.1| recombination protein F [Enterococcus gallinarum EG2] gi|257805556|gb|EEV34378.1| recombination protein F [Enterococcus gallinarum EG2] Length = 370 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/355 (25%), Positives = 167/355 (47%), Gaps = 20/355 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L ++ +RNY SL L FD IF+G+N GKTN+LE+I L+ + R S ++ Sbjct: 1 MRLNNLQLNNYRNYESLELSFDKNLVIFLGENAQGKTNVLESIYVLAMTKSHRTTSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A+V G +I LE + R ++N + + + L + Sbjct: 61 IRWDTAG-----AQVSGAVSRGHSTIPLELFLTKKGRKTKVNHIEQKKLSSYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180 P + G RR+F+D + IDP + ++ ++ +++ RN+ L + + D Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLFEKKQNDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENFPHIKLSLTGFLDGK 235 + + + Q+ E G KI AR + L+ + Q KE LS G + Sbjct: 176 LYLTVLTEQLIEFGSKIIFARQRFVKRLAFWANQLHQKISDEKEVLQIEYLSSVGTVSAS 235 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 +Q +++++ L + + M + +L+GPHR DL D+ + GS G+Q+ Sbjct: 236 LEQ----VQQQFKDALDQVKTREKMRQISLVGPHRDDLNFLINDRNVQ-TFGSQGQQRTT 290 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA L+ TG P+LLLD++ + LD+ ++ L + + Q F+T T Sbjct: 291 ALSVKLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETI-EGKVQTFITTT 344 >gi|167770841|ref|ZP_02442894.1| hypothetical protein ANACOL_02194 [Anaerotruncus colihominis DSM 17241] gi|167666881|gb|EDS11011.1| hypothetical protein ANACOL_02194 [Anaerotruncus colihominis DSM 17241] Length = 379 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 167/369 (45%), Gaps = 32/369 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + I++FRN ASL L + GDNG GKTN +EA+ + + FR A A + Sbjct: 1 MRIDRIRITDFRNIASLELALCPGANVIYGDNGQGKTNFIEAVWMCTGAKSFRGAKDAQL 60 Query: 65 TRIGSP------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 R G+P F++ G E A ++I E R R +N+V ++ EL Sbjct: 61 VRFGAPQAAVEAGFYAA-----GREQKALLTI--EKR-----RAAALNEVPLKSAAELAG 108 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 P+ + E+RRF+D + I P++ + + R++ RNRLL + + Sbjct: 109 QFCAVVFSPAHLTLVKNGPQEKRRFIDTSICQIKPKYIHVLNQYTRVLDQRNRLLKDIMY 168 Query: 179 DSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTG 230 ++S ++ +A++A G + R + L+ E +E F Sbjct: 169 ETSLFDTLDIWDARLAAYGAVVIKTRATFLERLAPCAQEIYGGLAGGREKFGARYAPSLA 228 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 G S +++ + L R D +R T GPHR D+ + D A GS G Sbjct: 229 VDPGA---SMSEIEQRALEDLRVHRGEDIRTRMTGAGPHRDDIDLTL-DGQSARAFGSQG 284 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + LA LI T G P++LLD++ + LD +R+ L + G QI MT Sbjct: 285 QQRSCVLALKLAECELIRETRGEYPVVLLDDVMSELDAARRDYLLNHLQ--GRQIIMTSC 342 Query: 351 DKSVFDSLN 359 D S F L+ Sbjct: 343 DGSDFKGLS 351 >gi|325567638|ref|ZP_08144305.1| recombination protein F [Enterococcus casseliflavus ATCC 12755] gi|325159071|gb|EGC71217.1| recombination protein F [Enterococcus casseliflavus ATCC 12755] Length = 370 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/371 (24%), Positives = 171/371 (46%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++S +RNY SL L F+ IF+G+N GKTNILE+I L+ + R +S ++ Sbjct: 1 MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + AR+ G +I LE + R ++N + + + L + Sbjct: 61 IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + IDP + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238 + + Q+ G KI +AR + L+ + QK + +++ + G+ Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEAT- 234 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S +++++ K L + + + TL GPHR DL +K + GS G+Q+ + Sbjct: 235 SLEEIQQQFVKALAQVKDRERFRQVTLAGPHRDDLDFLINEKNVQ-TFGSQGQQRTTALS 293 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA L+ TG P+LLLD++ + LD+ ++ L + T T + V D + Sbjct: 294 VKLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGKVQTFLTTTTLEHVKDKM 353 Query: 359 NETAKFMRISN 369 + A+ + Sbjct: 354 SVEAEIFYVEQ 364 >gi|291548765|emb|CBL25027.1| recF protein [Ruminococcus torques L2-14] Length = 363 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 104/358 (29%), Positives = 161/358 (44%), Gaps = 28/358 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L L FD + I GDN GKTNILEA+ + R D+ + Sbjct: 3 IKSLKLKNYRNYDLLDLTFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDRDMIQ 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S T +G+ D+ +K S + + I+ V IR EL + + Sbjct: 63 FGYDESHLETVVEKKGIIFQIDMHLK-----KNSPKGIAIDKVPIRRASELFGIVHFVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS---- 181 P I RRRF+D + +D + + ++ R++ RN LL + Y + Sbjct: 118 SPEDLNIIKEGPAGRRRFIDLELSQLDKIYLNNLSNYNRIINQRNSLLKDIYGSNQQHLL 177 Query: 182 -----WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 W + Q+A G K+ R E + ++ +I E + +LSLT + Sbjct: 178 ETLDIW----DMQLAAYGTKVLDRRKEFVRQVNEIISEIHFRLTGGKERLSLT------Y 227 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + S + E A K R+ D + T +GPHR DL D I GS G+Q+ Sbjct: 228 ESSIGEMSMEQALK--KNRERDLRMKSTSVGPHRDDLCFLSGDLDIR-KFGSQGQQRTAA 284 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + LA L+ G PILLLD++ + LD++++N L + DI + I TG D+ V Sbjct: 285 LSLKLAEIELVKRIIGDTPILLLDDVLSELDKNRQNYLLDSIHDIQTVITCTGLDEFV 342 >gi|304439075|ref|ZP_07398994.1| recombination protein F [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372434|gb|EFM26021.1| recombination protein F [Peptoniphilus duerdenii ATCC BAA-1640] Length = 361 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/366 (27%), Positives = 176/366 (48%), Gaps = 13/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + FRNY L+L+ +FVG N GKTN++E+I+ G FR + A++ Sbjct: 1 MKLKSLQLINFRNYEDLKLIPSETLNLFVGKNAQGKTNLIESIAVSISGSSFRTSKNAEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +G+ S + + +E L SI + D S IN + + D K Sbjct: 61 IELGNKS-SNIISEIEKKGRLEKRSIYI----DSSGIKHSINGKITTLKD-FTKSSAAVI 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I +RRR+LD ++ +D +R + +++++ +N+ L D + Sbjct: 115 FKPDDLYIIKNSPSDRRRYLDDIISNLDSIYRYNLNSYKKVLYEKNKALKVNNND-TLLD 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+++ +I I R+ +I L S EY + + K++ ++ K ++ L Sbjct: 174 IYDRQLSKFASEILIKRLNIIKILESYAKEYYKTLSGCDFKITYLSTINLK--KTREELV 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EE+ L R +D T IGPHR D+ DK++ GS GE + ++ + LA Sbjct: 232 EEFLNALRSRRHIDKRKLYTSIGPHRDDIDFKINDKSVK-NFGSQGEIRSSILVLKLAEL 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETAK 363 + I N P+LLLD++ + LD +R+AL + G Q F+T T+ + DS +++ +K Sbjct: 291 KYILNVLNITPVLLLDDVLSELDSTRRDALLTSIE--GIQTFITSTNSEIIDSYIDDNSK 348 Query: 364 FMRISN 369 I N Sbjct: 349 VFMIEN 354 >gi|163790922|ref|ZP_02185345.1| recombination protein F [Carnobacterium sp. AT7] gi|159873764|gb|EDP67845.1| recombination protein F [Carnobacterium sp. AT7] Length = 373 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 97/381 (25%), Positives = 175/381 (45%), Gaps = 32/381 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++S +RNY ++F +F+G+N GKT+++EAI L+ R R A+ + R Sbjct: 3 LKEIHLSNYRNYEHAEVIFSKGINVFLGENAQGKTSLMEAIYVLAMARSHRTANDKETIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + FARV G + S LE + + + N + + + E +L + Sbjct: 63 -----WDQDFARVSGRIQKKNTSFPLEISISKKGKKAKFNHLEQKKLSEYIGNLNVILFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182 P + G RR+FLD + + P + ++ ++ L++ RN L + D ++ Sbjct: 118 PEDLSLVKGSPSVRRKFLDMEMGQMSPIYLHHLVQYQHLLKQRNSYLKQLSLKKEKDLTF 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+AE G I + R + L + + V E +L G+ C+ Sbjct: 178 LDILTEQLAEYGAAILLERFSFVKKLENW-AKPVHSEISKQKELLEIGYA--------CS 228 Query: 243 LK---EEYAKKLF--------DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 LK E ++L+ GR+ + R T+ GPHR DL + + +GS G+ Sbjct: 229 LKITDETSKEQLYSDLMNAFAQGRQRELEQRTTIFGPHRDDLKFTVNGRNVQ-TYGSQGQ 287 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 Q+ + + LA L+ TG P+LLLD++ + LD++++ L + + + Q F+T T Sbjct: 288 QRTTALSVKLAEIDLMKEMTGEYPVLLLDDVLSELDDERQTHLLKAIQN-KVQTFLTTTS 346 Query: 352 -KSVFDSLNETAKFMRISNHQ 371 + ++ ET K I N Q Sbjct: 347 LDGIKKNMLETPKIFLIDNGQ 367 >gi|325288204|ref|YP_004264385.1| DNA replication and repair protein RecF [Syntrophobotulus glycolicus DSM 8271] gi|324963605|gb|ADY54384.1| DNA replication and repair protein RecF [Syntrophobotulus glycolicus DSM 8271] Length = 366 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 166/364 (45%), Gaps = 15/364 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L FRNY+ + F I VG NG GKTN+LE I +L G+ +R +++ Sbjct: 3 IHNLYFKNFRNYSEQEITFTNGINILVGSNGQGKTNVLEGIYYLLMGKSYRVNQESELIY 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G +F+ A E E LE+ ++ + ++IN + + + E + + + Sbjct: 63 WGQKNFYLR-ANFEAYER----KYCLESYYEKGKKAIKINQLACQKLSEYVGMINVVFFT 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P I +ERRRF+D ++ + P H + + R+++ ++ LL ++ + Sbjct: 118 PDDLNIIKSGPLERRRFIDLLLIQVKPAHISLLNTYIRILKQKSILLKRSLNKAAANDQL 177 Query: 187 ---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQSFC 241 Q+ E G ++ R EM L + + K H + L G+ D++ Sbjct: 178 LVWNEQLLETGSRVIRNRYEMTEKLQNQCGKMFSKVFGCHENMDLQYVSLGRKSLDEALA 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 E K+ R + R L+GPHR D+IV+ ++ + S G+Q+ +++ + L Sbjct: 238 YFPEALEKQ----RDAEIERRAVLVGPHRDDIIVNINGRSARY-YASQGQQRSLVLCLKL 292 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A +I+ PILLLD++ + LDE +R L +++ Q +T TD + + Sbjct: 293 AEMEIINKEKEEYPILLLDDVLSELDEGRREYLMEYISNSNKQTMITTTDLGQIEKQKDP 352 Query: 362 AKFM 365 A ++ Sbjct: 353 AVYI 356 >gi|166032887|ref|ZP_02235716.1| hypothetical protein DORFOR_02608 [Dorea formicigenerans ATCC 27755] gi|166027244|gb|EDR46001.1| hypothetical protein DORFOR_02608 [Dorea formicigenerans ATCC 27755] Length = 361 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 102/379 (26%), Positives = 170/379 (44%), Gaps = 31/379 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L + FRNY L L FD IF GDN GKTNILEA+ + R + D+ Sbjct: 1 MKIKSLKLKNFRNYELLNLEFDDSTNIFYGDNAQGKTNILEAVYLSGTTKSHRGSKDRDM 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ S G++ D+ +K + + IN + IR EL + + Sbjct: 61 IRFGAEESHIEVIVEKRGIQDQIDMHLK-----KNRPKGVAINKIPIRKAGELFGIVNLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P I RR+F+D + +D + + ++ R++ RN LL + + Sbjct: 116 FFSPEDLNIIKNGPAGRRKFIDLELSQLDKVYFNHLSNYSRVVNQRNHLLKDSAYRQDAM 175 Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK----- 235 +++ Q+ + G I R + ++ ++ ++ I LTG GK Sbjct: 176 ETLDIWDLQLVQYGNAIIARRKQFVDEMNEIV---------SGIHKKLTG---GKEEIRL 223 Query: 236 -FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 ++ S + E A ++ R+ D + T +GPHR D+ + I GS G+Q+ Sbjct: 224 IYEPSTKNMSLEQALEM--NRQRDIRMKSTSVGPHRDDVCFMVGNLDIR-RFGSQGQQRT 280 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + LA L+ TG P+LLLD++ + LD+ ++N L + DI + I TG D+ V Sbjct: 281 AALSLKLAEIELVKRVTGDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVDEFV 340 Query: 355 FDSLNETAKFMRISNHQAL 373 E K + N Q + Sbjct: 341 NHRF-EVNKVFHVQNGQVI 358 >gi|67809989|gb|AAY81983.1| recombinase F [Wolbachia pipientis] Length = 320 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 98/327 (29%), Positives = 157/327 (48%), Gaps = 15/327 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-T 65 IK L + FR++++ L D + G NG+GKTNILEAIS L+ G ++A +++ Sbjct: 6 IKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAKASEIQN 65 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R + + + GM+ SI + D+ + +QI+ L K + WL Sbjct: 66 RFSNEDWVVHYDFFNGMDF---NSIGIAKSFDK--KLIQIDGKTQSSYSSLYKISNVIWL 120 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 +P MD + +R +FLDR+V + + + + R R++LL E D +W SS Sbjct: 121 IPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLDKNWLSS 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +E MA V I R ++ L I + E FP L + L + E Sbjct: 181 LENIMAVNAVSILRMRSSVLKTLQDTIDNH-SGELFPKASLKFSSQL------TLDDTAE 233 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVGIFLAHA 304 + +L + R+ DS++ R G H + V +C K + I STGEQK++L+ I L+ Sbjct: 234 YFQNRLKENREKDSLTGRVTFGVHNDNFRV-FCQKRNVPINLCSTGEQKLLLLSIILSSV 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKR 331 + AP+LLLD+I +HLD+ R Sbjct: 293 KARCIHYNKAPLLLLDDIMSHLDKHYR 319 >gi|319945993|ref|ZP_08020242.1| recombination protein F [Streptococcus australis ATCC 700641] gi|319747801|gb|EFW00046.1| recombination protein F [Streptococcus australis ATCC 700641] Length = 362 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 104/374 (27%), Positives = 172/374 (45%), Gaps = 24/374 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I +FRNY + L F + IF+G N GKTN+LE+I FL+ R R S D+ Sbjct: 3 LKSIHIQKFRNYKDVDLQFHSGLNIFLGQNAQGKTNLLESIYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F V G+ SI LE R +IN + + ++ + Sbjct: 63 FQEEQF-----TVSGILEKKTGSIPLEISLSSKGRVTKINHLKQSKLSTYIGNMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + + P + + + +++ RN L T D ++ Sbjct: 118 PEDLQLVKGSPALRRKFIDIDLGQMKPVYLSDLTAYHHVLKQRNSYLKTATTVDPTFLDV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCALK 244 ++ Q+A+ G ++ I R + + L EY +E H ++S L ++D S Sbjct: 178 LDEQLADYGSRVCIHRKDFLKKL-----EYFGQEK--HFEISNQAEKLTIRYDSSIPFQD 230 Query: 245 EEYAKKLF-----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 EE ++ F + R D + + T +GPHR D+ D T GS G+ + V++ I Sbjct: 231 EETLRQTFIILLRENRTKDLIKKTTSVGPHRDDITFYINDMNATF--GSQGQHRSVVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358 LA LI + T PILLLD++ + LD +++ L +++ DI Q F+T T L Sbjct: 289 KLAEISLIESLTKEKPILLLDDVMSELDNNRQLHLLEVISRDI--QTFITTTTLDHLKDL 346 Query: 359 NETAKFMRISNHQA 372 E K I + Q Sbjct: 347 PEDLKIFNIHSGQV 360 >gi|163814984|ref|ZP_02206371.1| hypothetical protein COPEUT_01137 [Coprococcus eutactus ATCC 27759] gi|158449667|gb|EDP26662.1| hypothetical protein COPEUT_01137 [Coprococcus eutactus ATCC 27759] Length = 369 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 175/382 (45%), Gaps = 33/382 (8%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + I+ + ++ +RNY L++ F I G+N GKTNILE+I + + R Sbjct: 1 MVKDMYIESIELNNYRNYRKLKVEFGKNTNILYGNNAQGKTNILESIYMAATTKSHRGTK 60 Query: 61 YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNK 118 D+ RIG S F R D+S K++ +S + + I+ + IR EL Sbjct: 61 DRDIIRIGEDESHIRLFLRKR------DVSHKIDMHLRKSKNKGVAIDGIAIRRATELYG 114 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 L + + P I ERRRF+D + I + + + + +++ RN LL + Y+ Sbjct: 115 LLNVIFFSPEDLSIIKNGPAERRRFMDLELCQISRLYYQNLASYNKILNQRNNLLKQIYY 174 Query: 179 DSSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 + S +++ Q+ + G KI R I+ ++ +I + + KL + Sbjct: 175 NKSLIDTLDVWNIQLVDYGSKIIKERKNFIDMMNDIICDIHSRLTGGREKLEIV------ 228 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQK 293 + + + L + + D T GPHR D+ +++ D +GS G+Q+ Sbjct: 229 --YEYNVNENNFEDVLREKLETDLKYSSTQAGPHRDDISFLINGIDAR---KYGSQGQQR 283 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK- 352 V + + +A +L+ PILLLD++ + LD D+RNAL + DI + I TG D+ Sbjct: 284 TVALSLKMAEIKLVKKIISDNPILLLDDVMSELDTDRRNALIDEIKDIQTIITCTGYDEF 343 Query: 353 --------SVFDSLNETAKFMR 366 +V+ +N TA +R Sbjct: 344 IKEQVIINNVYSVVNGTATRVR 365 >gi|325663386|ref|ZP_08151836.1| hypothetical protein HMPREF0490_02577 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086960|ref|ZP_08336036.1| hypothetical protein HMPREF0987_02339 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470840|gb|EGC74070.1| hypothetical protein HMPREF0490_02577 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409621|gb|EGG89060.1| hypothetical protein HMPREF0987_02339 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 361 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 103/359 (28%), Positives = 167/359 (46%), Gaps = 32/359 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + FRNY L + FD IF GDN GKTNILEA+ + R D+ + Sbjct: 3 IKSLKLKNFRNYDFLSIEFDHATNIFYGDNAQGKTNILEAVYLTGTTKSHRGTKDRDLIQ 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ S T +G+E D+ +K S + + IN + IR EL + + + Sbjct: 63 FGNEESHIETVIEKDGIEFQVDMHLK-----KNSPKGIAINKIPIRKASELFGLVHLVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + +D + + ++ R++ RNRLL + C + Sbjct: 118 SPEDLNIIKNGPAERRRFMDLELSQLDKVYLSDLANYNRIINQRNRLLKD-------CQN 170 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDG---KF 236 AEL +++ +++I S IME +K E I LTG + + Sbjct: 171 ----RAELNEMLDLWDMQLI-QYGSRIMERREKFLEEVNEIISGIHYKLTGGRETITISY 225 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVV 295 +++ + E+ L R+ D + T GPHR D+ + K I I GS G+Q+ Sbjct: 226 EKNIGQM--EFESVLKKNRERDIRMKSTSAGPHRDDIC--FLTKDIDIRKFGSQGQQRTA 281 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + L+ ++ P+LLLD++ + LD++++N L + DI + I TG D+ V Sbjct: 282 ALSLKLSEIEIVRKLIKDTPVLLLDDVLSELDKNRQNYLLDSIHDIQTLITCTGVDEFV 340 >gi|332980608|ref|YP_004462049.1| DNA replication and repair protein RecF [Mahella australiensis 50-1 BON] gi|332698286|gb|AEE95227.1| DNA replication and repair protein RecF [Mahella australiensis 50-1 BON] Length = 363 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 102/375 (27%), Positives = 175/375 (46%), Gaps = 25/375 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L ++++RNY ++++ F+ +F GDNG GKTNILEAI S GR R + D+ R Sbjct: 3 IKELTLTDYRNYNNVKINFNIGINVFWGDNGAGKTNILEAIYLTSAGRSHRTSRDKDMIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ F +V +G D+++ + + ++ +N I + +L + Sbjct: 63 QGAQDAFINI-KVIRKDGEIDVNMMIPQNGSKRIK---VNGKYINRIAQLMGIVTAVIFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183 P ++ ERRRF+D + I P + + + +++ RN+ L + G+ Sbjct: 119 PEDLKLVKEGPEERRRFIDIFISQIKPDYLYNLQKYYKILENRNKTLKDIKYGHASRDLL 178 Query: 184 SSIEAQMAELGVKINIAR---VEMINALSSLIMEYV--QKENFPHIKLSLTGFLDGKFDQ 238 + Q+A +G ++ R V+ I A S I EY+ KEN ++ T L G Q Sbjct: 179 AVWNEQLAYIGTELLEQRLYFVDKICAEVSDIHEYITDHKENLK-LRYKSTLSLSGNIKQ 237 Query: 239 SF-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +F AL + + + G T IGPHR D+I+ D + +GS G+Q+ + Sbjct: 238 NFISALNQRFDADINMG--------TTTIGPHRDDMIILVNDMDMR-YYGSQGQQRTAAL 288 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + L + + G +P+LLLD++ + LD ++N L + Q MT KS + Sbjct: 289 SLKLGQLEVTEDLIGESPVLLLDDVMSELDIMRQNMLMSYMKRY--QTMMTCIRKSDYLE 346 Query: 358 LNETAKFMRISNHQA 372 + F + N Q Sbjct: 347 QYDKKTFFYVENGQV 361 >gi|323342251|ref|ZP_08082483.1| recombination protein F [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463363|gb|EFY08557.1| recombination protein F [Erysipelothrix rhusiopathiae ATCC 19414] Length = 361 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 175/366 (47%), Gaps = 14/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +FRN ++L L F+ +FVGDNG GKTNI+E++ +LS GR FR +S + Sbjct: 1 MKVKNLELKQFRNISNLNLSFNKNINVFVGDNGQGKTNIIESLVYLSSGRSFRVSSDEYL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ F S A +E ++ + L + + + LQ+N ++ + E + Sbjct: 61 IQYGN-EFLSVIADIEDQNNTQNLKVVLSS----AGKYLQVNQQPLKKMTEFIGRCNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P +S +RRR +D + + R+ ++ +L+ RN L D + Sbjct: 116 FNPEDINFYSNSPRKRRREIDFELGKMSKRYLNQLSLSNKLLSERNAYLKNKNVDQDYLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCA 242 + ++ + + I R + ++AL+ +I Y ++ HI L + + D Sbjct: 176 ILTEKLVDASILIIEMRAKFVHALNPIINHYYHLLSDSKDHIVLHYKAPISLEGD----- 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 LKE+ K+ D + D + T G HR D I D + + S G+++++++ LA Sbjct: 231 LKEQLLSKMQDSFQRDCDFKVTQNGIHRDDFIFMINDIPV-VNVSSQGQKRMLIIAFKLA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 LI + PIL LD++ + LD +R + ++ + Q+F+T TD S + + Sbjct: 290 IVELIFQSRKTYPILCLDDLFSELDNVRRERVLNVLHE-EMQVFITTTDLDYVKSKRDKS 348 Query: 363 KFMRIS 368 F +S Sbjct: 349 VFKVVS 354 >gi|289449549|ref|YP_003474443.1| putative DNA replication and repair protein RecF [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184096|gb|ADC90521.1| putative DNA replication and repair protein RecF [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 382 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 97/360 (26%), Positives = 179/360 (49%), Gaps = 25/360 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + FRNY L F + +F G NG GKTN+LEAI + GR R + AD+ + Sbjct: 3 INKLELENFRNYDHLTASFIPEINVFYGFNGQGKTNLLEAIYLCTCGRSHRTSRDADLIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--NDVV--IRVVDELNKHLRI 122 + + E +SI + + S R +I +D + R+VD + + Sbjct: 63 FEQLHYQVLIEFIPQDEYCETLSIAYKKDNFSSARGKRIIKHDGIELTRIVDLMGIFHAV 122 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + + + G + RRRFLD ++ ID + ++ F ++++ RN++L + +S W Sbjct: 123 IFAPEDLQLLKDGPGI-RRRFLDILISQIDKLYFIKLQQFVKIIQQRNKMLKDKNTNSKW 181 Query: 183 CSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S ++ Q+AEL I R++++N +S + E+ Q+ + S + +D K++ + Sbjct: 182 QSLMDIWDFQLAELVTYIISKRIQVLNEISDMTKEFYQQIS------SGSEMIDLKYECT 235 Query: 240 FCA----LKEEYAKKLFD----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 F KE+ + ++D R+ D T +GPH D+ +K + S G+ Sbjct: 236 FKTNLKLEKEKVVQNIYDELQKQRQNDLYRGSTSLGPHHDDMQFFLNNKQAKLV-ASQGQ 294 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + +++ + LA ++ TG P+LLLD++ + LD+++RNAL + +Q+F+T T+ Sbjct: 295 TRSIVLALKLAELECLTEKTGIRPVLLLDDVMSELDQNRRNALIGAMK--SAQVFVTCTE 352 >gi|257866279|ref|ZP_05645932.1| recombination protein F [Enterococcus casseliflavus EC30] gi|257873205|ref|ZP_05652858.1| recombination protein F [Enterococcus casseliflavus EC10] gi|257800237|gb|EEV29265.1| recombination protein F [Enterococcus casseliflavus EC30] gi|257807369|gb|EEV36191.1| recombination protein F [Enterococcus casseliflavus EC10] Length = 370 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 171/371 (46%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++S +RNY SL L F+ IF+G+N GKTNILE+I L+ + R +S ++ Sbjct: 1 MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + AR+ G +I LE + R ++N + + + L + Sbjct: 61 IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + IDP + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238 + + Q+ G KI +AR + L+ + QK + +++ + G+ Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEAS- 234 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + +++++ K L + + + TL GPHR DL +K + GS G+Q+ + Sbjct: 235 TLEEIQQQFVKALAQVKDRERFRQVTLAGPHRDDLDFLINEKNVQ-TFGSQGQQRTTALS 293 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA L+ TG P+LLLD++ + LD+ ++ L + T T + V D + Sbjct: 294 VKLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGKVQTFLTTTTLEHVKDKM 353 Query: 359 NETAKFMRISN 369 + A+ + Sbjct: 354 SVEAEIFYVEQ 364 >gi|262281653|ref|ZP_06059422.1| recombination protein F [Streptococcus sp. 2_1_36FAA] gi|262262107|gb|EEY80804.1| recombination protein F [Streptococcus sp. 2_1_36FAA] Length = 361 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 168/365 (46%), Gaps = 12/365 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRNY + F + +F+G N GKTNILE+I FL+ R R S D Sbjct: 3 LKSLTLKHFRNYQDAEINFHSGLNVFLGQNAQGKTNILESIYFLALTRSHRTRSDKDFIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F +V G+ +I L+ R +IN + + + + + Sbjct: 63 -----FQEKDLKVSGILEKKTGTIPLDIELTAKGRITKINHLKQNRLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPLYLADLSNYNHVLKQRNSYLKNSQKIDENFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFDQSFCALK 244 ++ Q+ E G ++ R++ + L E + + K +LT +L Q +++ Sbjct: 178 LDEQLIEYGCRVVKHRLDFLKKLEIFAQE--KHLDISQKKETLTIDYLSSVPLQDIDSIE 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + + L RK D + T +GPHR D + + + +GS G+ + V++ + LA Sbjct: 236 ESFRQSLSKNRKRDLFKQNTGVGPHRDD--IAFFINQMDANYGSQGQHRSVVLSLKLAEI 293 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 +LI N T +PILLLD++ + LD D++ L ++ Q F+T T +L + K Sbjct: 294 KLIENITKESPILLLDDVMSELDNDRQLKLLETISQ-EIQTFITTTTLEHLKNLPKDIKI 352 Query: 365 MRISN 369 ISN Sbjct: 353 FEISN 357 >gi|108763273|ref|YP_628527.1| DNA replication and repair protein RecF [Myxococcus xanthus DK 1622] gi|122981391|sp|Q1DFP6|RECF_MYXXD RecName: Full=DNA replication and repair protein recF gi|108467153|gb|ABF92338.1| DNA replication and repair protein RecF [Myxococcus xanthus DK 1622] Length = 380 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 93/355 (26%), Positives = 163/355 (45%), Gaps = 11/355 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++ +FRN ++L A TI VG NG GKTN+LEA+ FL+ + R +++ Sbjct: 1 MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS ARV G L ++ R ++ +++ + + Sbjct: 61 VRWGSQG-----ARVTGRFLLKGAEREIAVEVGGGTRQAFVDGKKASSLEDYFGGVSVVA 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P + G RR FLDR VF P R ++ R ++ RNRLL EG+ D+ + Sbjct: 116 FTPDDLEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNRNRLLREGHTVDAVYL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSS---LIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + +A+ G +I R ++ L+ + + P + L+G F + Sbjct: 176 EAYDETLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAAD 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++ R M R T +GPH D+ V ++ A+ S G+Q+ +++G Sbjct: 236 ETALAAMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSAR-AYASQGQQRALVLGW 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 +A + GF P+LLLD++S+ LD ++ L + G+Q+ +T TD S+ Sbjct: 295 KIAEIENLEAAMGFLPLLLLDDVSSELDPERNAYLMGYLAQSGAQVVLTTTDGSL 349 >gi|1107710|emb|CAA61549.1| recF [Lactococcus lactis] Length = 357 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 157/330 (47%), Gaps = 19/330 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K + + FRNY L+L F IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S+ +V G+ A +I LE + R + N + + + L+I Sbjct: 61 I-----SWSQQEMKVSGVGEKAHATIPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RR+F+D + I + + + R ++ RN L + D ++ Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S ++ Q+AE G KI + R I+ L + E H K +L ++Q+ Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLE--VHAKKIHEQLTHGKENLKII----YNQN--- 226 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301 +K +++K+L + D +T +GPHR DL + I +A GS G+Q+ V + I L Sbjct: 227 VKTDFSKELLSRQDHDIFRHQTSVGPHRDDL--QFFINEINVADFGSQGQQRTVALSIKL 284 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKR 331 A LI TG PILLLD++ + LD ++ Sbjct: 285 AEIDLILEETGEYPILLLDDVMSELDNHRQ 314 >gi|51316445|sp|Q899S7|RECF_CLOTE RecName: Full=DNA replication and repair protein recF Length = 367 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 178/379 (46%), Gaps = 26/379 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K+L + FRNY L + D +F+G+N GKTN+LE+I + S GR R + ++ + Sbjct: 3 VKYLKLINFRNYKELNIELDKNINVFIGNNAQGKTNVLESIYYASIGRSHRTSKDKELIK 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 S S+ + E ++ +I + E + + + +N + I + EL L + Sbjct: 63 WQESNSYIKIYVAKERLDKTIEIRVLKEGK-----KAINVNSININKLSELFGILNVVIF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWCS 184 P I RR+FLD + + ++ ++ +++++ RN LL +G + + Sbjct: 118 SPEDLSIVKESPSFRRKFLDIELSKLSKQYYYNLVQYQKVLNERNMLLKKGGDEVPNIIG 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHI-KLSLTGFLDGKF 236 + Q+A G I R + + L+ + I ++ +F ++ + DGK Sbjct: 178 VYDEQLARFGSNIIREREKYLKKLNDIGKKIHLEITSDKEEISFTYLSSIKNKNMDDGKI 237 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ F +++ R D R T +GPHR D +++ + T ++GS G+Q+ Sbjct: 238 EEIFL-------QEIIKNRNSDIEKRYTSVGPHRDDFLIN-INNVNTRSYGSQGQQRTAT 289 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + I A +I + G P+LLLD++ + LD ++ + + DI + I TG + ++ Sbjct: 290 LTIKFASLDIIKDEIGEYPVLLLDDVLSELDSSRQKYILSSIRDIQTIITCTGIE-NIKK 348 Query: 357 SLNETAKFMRISNHQALCI 375 L AK ++ N + CI Sbjct: 349 YLKNDAKIFKVENGE--CI 365 >gi|18308986|ref|NP_560920.1| recombination protein F [Clostridium perfringens str. 13] gi|110801062|ref|YP_694479.1| recombination protein F [Clostridium perfringens ATCC 13124] gi|110802319|ref|YP_697355.1| recombination protein F [Clostridium perfringens SM101] gi|168207733|ref|ZP_02633738.1| DNA replication and repair protein RecF [Clostridium perfringens E str. JGS1987] gi|168212007|ref|ZP_02637632.1| DNA replication and repair protein RecF [Clostridium perfringens B str. ATCC 3626] gi|168215270|ref|ZP_02640895.1| DNA replication and repair protein RecF [Clostridium perfringens CPE str. F4969] gi|168218303|ref|ZP_02643928.1| DNA replication and repair protein RecF [Clostridium perfringens NCTC 8239] gi|169343436|ref|ZP_02864436.1| DNA replication and repair protein RecF [Clostridium perfringens C str. JGS1495] gi|182627052|ref|ZP_02954777.1| DNA replication and repair protein RecF [Clostridium perfringens D str. JGS1721] gi|20978577|sp|Q8XPF9|RECF_CLOPE RecName: Full=DNA replication and repair protein recF gi|122956936|sp|Q0SWY1|RECF_CLOPS RecName: Full=DNA replication and repair protein recF gi|123345112|sp|Q0TV61|RECF_CLOP1 RecName: Full=DNA replication and repair protein recF gi|18143661|dbj|BAB79710.1| DNA repair and genetic recombination protein [Clostridium perfringens str. 13] gi|110675709|gb|ABG84696.1| DNA replication and repair protein RecF [Clostridium perfringens ATCC 13124] gi|110682820|gb|ABG86190.1| DNA replication and repair protein RecF [Clostridium perfringens SM101] gi|169298388|gb|EDS80477.1| DNA replication and repair protein RecF [Clostridium perfringens C str. JGS1495] gi|170660924|gb|EDT13607.1| DNA replication and repair protein RecF [Clostridium perfringens E str. JGS1987] gi|170710063|gb|EDT22245.1| DNA replication and repair protein RecF [Clostridium perfringens B str. ATCC 3626] gi|170713334|gb|EDT25516.1| DNA replication and repair protein RecF [Clostridium perfringens CPE str. F4969] gi|177907578|gb|EDT70217.1| DNA replication and repair protein RecF [Clostridium perfringens D str. JGS1721] gi|182379694|gb|EDT77173.1| DNA replication and repair protein RecF [Clostridium perfringens NCTC 8239] Length = 361 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 93/374 (24%), Positives = 171/374 (45%), Gaps = 21/374 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY +L + +F+GDN GKTN++EAI + + R ++ Sbjct: 3 IKSLQLINYRNYENLSIKLCPNVNVFIGDNAQGKTNVIEAIYYCGFAKSHRTNRDKELIE 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +F + ++ + D++I +D + + + IN + I + EL + Sbjct: 63 WNKDRAFIRLDVHKDRLDKIIDVNI---LKDGK--KAISINSIKISKIGELIGTFNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I RRRF+D + ++ R+ ++ + +++ RN +L + Sbjct: 118 SPEDLKIVKESPGIRRRFIDMELSQLNKRYYHNLVQYNKVLHERNLVLKNKNINEEMLDI 177 Query: 186 IEAQMAELG---VKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240 + Q+A+ G +K + +E +N S I + + KE +S LD Sbjct: 178 YDIQLAQYGENIIKTRLKYIEQLNKYSKEIHKEITSGKEEIEFKYISTVKDLDN------ 231 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +K+ K L RK D R T IGPHR D + Y + +GS G+Q+ ++ I Sbjct: 232 --IKDSMIKLLEQNRKKDIDKRATSIGPHRDDFNI-YLNNIDAKIYGSQGQQRTSVLTIK 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 A ++I TG P+LLLD++ + LD +++ + + +I + I TG + + L+E Sbjct: 289 FASLKIIKEITGEYPVLLLDDVLSELDFNRKRYVLTSIKNIQTVITCTGIE-DLTSYLDE 347 Query: 361 TAKFMRISNHQALC 374 +K R+ N + C Sbjct: 348 NSKVFRVINGRIQC 361 >gi|326789143|ref|YP_004306964.1| DNA replication and repair protein RecF [Clostridium lentocellum DSM 5427] gi|326539907|gb|ADZ81766.1| DNA replication and repair protein RecF [Clostridium lentocellum DSM 5427] Length = 360 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 104/379 (27%), Positives = 175/379 (46%), Gaps = 42/379 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L ++ FRNY L + D IF GDN GKTNILE+I + R R ++ R Sbjct: 3 IKELALTNFRNYEELNISLDKGINIFKGDNAQGKTNILESIYLCATARSHRTHKEKEIIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S A V+ I L ++ ++ IN + I + EL L I Sbjct: 63 WNEESAHVKLA-VQKNYVQDIIDFHLTSKAKSAI----INRMPIGRLGELFGCLNIVMFS 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSSWC 183 P ++ ERRRF+D + ID + + + ++++ RN L + YF D+S Sbjct: 118 PEDLQLIKNSPKERRRFIDIELCQIDKLYYYSLRQYHKVLKQRNLALKQ-YFSNKDASML 176 Query: 184 SSIEAQMAELGVKINIAR---VEMINALSSLIMEYV--QKENF-----PHIKLSLTGFLD 233 + Q+ E + R ++ IN ++S I + + KE P++++ Sbjct: 177 DVWDMQLEEYASAVIKKRHEFIQEINEIASKIHDDISGHKEKLQVIYEPNVEV------- 229 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 ++ KK+ R+ D + + T IGPHR DL D + +GS G+Q+ Sbjct: 230 -----------RDFGKKILKYREKDILYQTTSIGPHRDDLTFLINDMDVK-TYGSQGQQR 277 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 V++ + LA ++ G PILLLD++ + LD +++ LF+ +I + I TG ++S Sbjct: 278 SVVLSMKLAELNIMKKYIGEEPILLLDDVLSELDHNRQGDLFKYTQNIQTLITCTGIEQS 337 Query: 354 VFDSLNETAKFMRISNHQA 372 V++ T K ++ N +A Sbjct: 338 VWN----TQKIGKLYNVKA 352 >gi|171778593|ref|ZP_02919720.1| hypothetical protein STRINF_00572 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282816|gb|EDT48240.1| hypothetical protein STRINF_00572 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 364 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 163/365 (44%), Gaps = 13/365 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY + L F + +F+G N GKTN LEAI FLS R R S ++ Sbjct: 3 IQKIALKNYRNYLTNELEFSPRLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRSDKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 RV G+ + ++ LE R ++N + + + + + Sbjct: 63 FQEKEL-----RVSGILQRSSGTVPLEINLSSKGRVTKVNHLKQAKLSDYIGVMTVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L T D + + Sbjct: 118 PEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNTYLKTAEKVDIDFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+A+ G ++ R++ ++ L Y H K+ +L Q + Sbjct: 178 LDEQLADFGSRVMEHRLDFVSNLEKAADRYHYAISNGLEHFKIR---YLSSVPFQEKSEI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + K L RK D + T GPHR DL ++ + GS G+ + +++ + +A Sbjct: 235 KEYFLKTLEKNRKRDIFKKNTGAGPHRDDL--EFFINDMPANFGSQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI N TG PILLLD++ + LD ++ L +++ Q F+T T L E K Sbjct: 293 IELIKNVTGDFPILLLDDVMSELDNYRQTELLKMIIAENVQTFITTTSLEHLSKLPEELK 352 Query: 364 FMRIS 368 ++ Sbjct: 353 IFTVN 357 >gi|28209864|ref|NP_780808.1| recombination protein F [Clostridium tetani E88] gi|28202299|gb|AAO34745.1| recFprotein [Clostridium tetani E88] Length = 370 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 178/379 (46%), Gaps = 26/379 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K+L + FRNY L + D +F+G+N GKTN+LE+I + S GR R + ++ + Sbjct: 6 VKYLKLINFRNYKELNIELDKNINVFIGNNAQGKTNVLESIYYASIGRSHRTSKDKELIK 65 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 S S+ + E ++ +I + E + + + +N + I + EL L + Sbjct: 66 WQESNSYIKIYVAKERLDKTIEIRVLKEGK-----KAINVNSININKLSELFGILNVVIF 120 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWCS 184 P I RR+FLD + + ++ ++ +++++ RN LL +G + + Sbjct: 121 SPEDLSIVKESPSFRRKFLDIELSKLSKQYYYNLVQYQKVLNERNMLLKKGGDEVPNIIG 180 Query: 185 SIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHI-KLSLTGFLDGKF 236 + Q+A G I R + + L+ + I ++ +F ++ + DGK Sbjct: 181 VYDEQLARFGSNIIREREKYLKKLNDIGKKIHLEITSDKEEISFTYLSSIKNKNMDDGKI 240 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ F +++ R D R T +GPHR D +++ + T ++GS G+Q+ Sbjct: 241 EEIFL-------QEIIKNRNSDIEKRYTSVGPHRDDFLIN-INNVNTRSYGSQGQQRTAT 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + I A +I + G P+LLLD++ + LD ++ + + DI + I TG + ++ Sbjct: 293 LTIKFASLDIIKDEIGEYPVLLLDDVLSELDSSRQKYILSSIRDIQTIITCTGIE-NIKK 351 Query: 357 SLNETAKFMRISNHQALCI 375 L AK ++ N + CI Sbjct: 352 YLKNDAKIFKVENGE--CI 368 >gi|326202775|ref|ZP_08192642.1| LOW QUALITY PROTEIN: DNA replication and repair protein RecF [Clostridium papyrosolvens DSM 2782] gi|325986852|gb|EGD47681.1| LOW QUALITY PROTEIN: DNA replication and repair protein RecF [Clostridium papyrosolvens DSM 2782] Length = 372 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 105/364 (28%), Positives = 175/364 (48%), Gaps = 25/364 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + +RN+ + RLVF + I GDNG GKTNILEAI + GR R A +++ + Sbjct: 3 VKSLVLKNYRNHTNTRLVFSDRFNIIYGDNGQGKTNILEAIYLCASGRSHRTAKDSELIK 62 Query: 67 IGSPSFFSTFARVEGMEGL-ADISIK-LETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S FS A V + L DI IK E + ++ L+IN++ I+ + L +L Sbjct: 63 FGCDS-FSINANVFNIGSLEKDIEIKYYENQKNK----LKINEIPIKKIGALMGNLYAVL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I ERRRF+D + I P + + ++++ RN LL + Sbjct: 118 FSPEDLFIVKQGPTERRRFVDITLSQIRPSYFYNLQQLTKILKQRNTLLKNINSNPKLMD 177 Query: 185 SIE---AQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDG 234 +++ ++AE+ I AR LS+L + E +K +F + K S D Sbjct: 178 TVDIWNIRLAEVAASIITARRTFSKMLSNLAESQHNFLTEKSEKISFDY-KCSFQITEDD 236 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 ++ ++ Y K L D + T +GPHR D + K++ + GS G+Q+ Sbjct: 237 DKNK----IQNLYIKSLEKTLSRDIILGYTTMGPHRDDYDIMVNGKSLKL-FGSQGQQRS 291 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 ++ + +A LI T P+LLLD++ + LD +++ L + ++ Q F+T T Sbjct: 292 AVLSLKIAEIELIKRETEQYPVLLLDDVMSELDNNRQKYLMESIKEV--QTFVTCTSTEH 349 Query: 355 FDSL 358 F++L Sbjct: 350 FENL 353 >gi|331270703|ref|YP_004397195.1| DNA replication and repair protein RecF [Clostridium botulinum BKT015925] gi|329127253|gb|AEB77198.1| DNA replication and repair protein RecF [Clostridium botulinum BKT015925] Length = 360 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/375 (25%), Positives = 179/375 (47%), Gaps = 33/375 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + FRNY +L L F+ +FVGDN GKTNILE+I + G+ R ++ + Sbjct: 3 IKNLQVINFRNYDNLVLEFNKGINVFVGDNAQGKTNILESIYYCGLGKSHRTNKDKELIK 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 GS ++ S + E ++ DI I E + + +++N + ++ + +L + Sbjct: 63 WGSKDAYVSIYVCKERLDKKIDIKIFKEGK-----KGVKVNSIKLKTISDLIGIFNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I + RR+FLD + ++ ++ ++ + +++ RN +L + D Sbjct: 118 SPEDLKIVKESPLYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNTILRKWNSDKGVTEV 177 Query: 186 IEAQMAELGVKINIARVEMINALS-------SLIMEYVQKENFPHIKLSLTGFLD---GK 235 + Q+++ G I R++ I +LS I + +K F +I S+ F + G Sbjct: 178 YDHQLSKYGSFIIKERLKYIESLSIKGKRIHDEITSHKEKIEFKYI-TSIKNFNNIQSGF 236 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 FD L +++ K T GPHR D I++ + T GS G+Q+ Sbjct: 237 FDILRKNLDKDFEKG------------STSFGPHRDDFIIN-INNTDTRTFGSQGQQRTA 283 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSV 354 ++ I LA +I TG P+LLLD++ + LD +++ + + Q +TGT ++ Sbjct: 284 ILTIKLASLEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIKKF--QTIITGTGILNI 341 Query: 355 FDSLNETAKFMRISN 369 D L++ K +++N Sbjct: 342 KDYLDDHVKLFKVTN 356 >gi|118578452|ref|YP_899702.1| recombination protein F [Pelobacter propionicus DSM 2379] gi|118501162|gb|ABK97644.1| DNA replication and repair protein RecF [Pelobacter propionicus DSM 2379] Length = 370 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 163/350 (46%), Gaps = 10/350 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I++FRN S+R + G NG GKTN+LEAI L R FR A D Sbjct: 1 MRLTRLSIADFRNIGSVRFTPGRCFNLIHGRNGQGKTNLLEAIYLLGSPRSFRNARLPDF 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + G+ G +SI + + R ++++ I+ +L + + Sbjct: 61 IRHGEQRAHLHGEVESAGIHGRIGLSI------ENAGRRVELDGKGIQRASDLYGRINVV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + RRR+LDR ++ D + F+R+++ RN+LL D S Sbjct: 115 VFSPDDTAMVRYGPETRRRYLDRTIYMCDIGYLHCWHAFQRILKQRNQLLKNS--DKSGL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+AE G +I + R + L+ ++ + + S+ +G Q + Sbjct: 173 DTWTEQLAETGAEIIVRRRRFVERLNGMLQRHYGNISAGEETASVAYEPEGINSQEQQRV 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +EE + ++ D T GPHR DL + + + GSTG+QK ++ + +A Sbjct: 233 REELLELFQRSQQSDIRQGTTTAGPHRDDLKFRLDGRPLK-SFGSTGQQKSFVLALKMAE 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 +++ G P+LLLD++S+ LD+ + L + ++ Q+FMT T +S Sbjct: 292 IDNLTDIFGEPPLLLLDDVSSELDDARSGNLLHFLLNMDIQVFMTTTQRS 341 >gi|157149944|ref|YP_001449331.1| recombination protein F [Streptococcus gordonii str. Challis substr. CH1] gi|189039648|sp|A8AU71|RECF_STRGC RecName: Full=DNA replication and repair protein recF gi|157074738|gb|ABV09421.1| DNA replication and repair protein RecF [Streptococcus gordonii str. Challis substr. CH1] Length = 361 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/365 (26%), Positives = 167/365 (45%), Gaps = 12/365 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRNY + F + IF+G N GKTNILE+I FL+ R R S D Sbjct: 3 LKSLTLKHFRNYQDAEINFHSGLNIFLGQNAQGKTNILESIYFLALTRSHRTRSDKDFIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F +V G+ +I L+ R +IN + + + + + Sbjct: 63 -----FQEKDLKVSGILEKKTGTIPLDIELTAKGRITKINHLKQNRLSDYIGAMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPIYLADLSNYNHVLKQRNSYLKNSQNIDENFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFDQSFCALK 244 ++ Q+ E G ++ R++ + L E + + K +LT +L Q +++ Sbjct: 178 LDEQLIEYGCRVVKHRLDFLKKLEIFAQE--KHLDISQKKETLTIDYLSSVPLQDIDSIE 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L RK D + T +GPHR D + + + +GS G+ + V++ + LA Sbjct: 236 ESFRLSLSKNRKRDLFKQNTGVGPHRDD--IAFFINQMDANYGSQGQHRSVVLSLKLAEI 293 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 +LI N T +PILLLD++ + LD D++ L ++ Q F+T T +L + K Sbjct: 294 KLIENITKESPILLLDDVMSELDNDRQLKLLETISQ-EIQTFITTTTLEHLKNLPKDIKI 352 Query: 365 MRISN 369 ISN Sbjct: 353 FEISN 357 >gi|229824638|ref|ZP_04450707.1| hypothetical protein GCWU000282_01985 [Catonella morbi ATCC 51271] gi|229786009|gb|EEP22123.1| hypothetical protein GCWU000282_01985 [Catonella morbi ATCC 51271] Length = 384 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 160/359 (44%), Gaps = 18/359 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L +S FRNY + L TI G+N GKTN+LE+I LS + R +++ Sbjct: 1 MKLKTLKLSHFRNYQGIELCLGPGLTILTGENAQGKTNLLESIFLLSLAKSHRTNHDSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 AR+E + + I L + + Q+N + + Sbjct: 61 IEWDQEQ-----ARIEAVIETKNYEIPLALTLTKKGKVAQVNYLDQSKLSHFVGQFNTVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEG---YFDS 180 P ++ G RRRFLD + +P + ++ ++RL++ RN L EG FD Sbjct: 116 FAPEDMQLIKGAPNLRRRFLDIELGQANPIYLNHLLTYQRLLKQRNSYLKQEGRGKKFDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+ + G + R+E + L + Q + +L L +++G Q + Sbjct: 176 VFFEILTEQLCQEGAHLIQYRMEFLEKLGQIASPIHQNLSNGRDQLRLE-YING--SQVY 232 Query: 241 CALK-EEYAKKLFDGRKMDSMSRR----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 L EE K+L D + R TL GPHR D + DK GS G+Q+ + Sbjct: 233 QPLSLEERIKQLLDQASTYASRERDQGTTLFGPHRDDFMTYVNDKKAQF-FGSQGQQRTI 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 ++ + LA LI G P+LLLD++ + LD+D+++ L + D I T T K + Sbjct: 292 VLSLKLAEIELIKQARGEYPVLLLDDVLSELDDDRQHILMSYIKDKVQTILTTATIKGL 350 >gi|295108630|emb|CBL22583.1| DNA replication and repair protein RecF [Ruminococcus obeum A2-162] Length = 363 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/356 (27%), Positives = 167/356 (46%), Gaps = 26/356 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY +L+L FD IF GDN GKTNILE++ + R + ++ R Sbjct: 3 IKSLELKNYRNYQNLQLDFDKGTNIFYGDNAQGKTNILESVYLCGTTKSHRGSKDKEIIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + R+ + I + R +++ + + IN + I+ EL + + + Sbjct: 63 FGEE---ESHIRMMIRKDEFSYKIDMHLRKNKA-KGVAINGLPIKKARELFGIVNLVFFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P I ERRRF+D + +D + + + ++ RNRLL + Y + S ++ Sbjct: 119 PEDLNIIKNGPGERRRFMDLELCQLDQIYLTDLAGYNHIVNQRNRLLKDLYMNPSLKETL 178 Query: 187 ---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSF 240 + QM + G KI R + + L+ +I + I +LTG L+ ++ S Sbjct: 179 DIWDMQMLQYGTKIINKRKDFVRDLNQVIQD---------IHHNLTGGIEHLEVVYEPST 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298 A E++ L R+ D + T GPHR D L+V+ D +GS G+Q+ + Sbjct: 230 EA--EDFENVLKKNRERDIRMKMTSAGPHRDDLSLVVNGID---IRKYGSQGQQRTAALS 284 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + L+ L+ PILLLD++ + LD +++ L + DI + I TG D V Sbjct: 285 LKLSEIYLVKEKIKDTPILLLDDVLSELDSNRQTYLLDCIHDIQTLITCTGLDDFV 340 >gi|313904728|ref|ZP_07838102.1| DNA replication and repair protein RecF [Eubacterium cellulosolvens 6] gi|313470521|gb|EFR65849.1| DNA replication and repair protein RecF [Eubacterium cellulosolvens 6] Length = 362 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 167/358 (46%), Gaps = 26/358 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY + L FD+ + GDN GKTN+LEAI L + + + +++ Sbjct: 1 MHVESLELKNFRNYERIVLDFDSGTNVLYGDNAQGKTNLLEAIHVLGTTKSHKGSHDSEM 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + R G+ D+ +K + + + I+ + IR +L + I Sbjct: 61 IRFGEDEAHMRLIFRKNGIAHKVDMHLKKNGK-----KGVAIDGLPIRKAADLFGMINIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P I ERRRFLD + +D + + + D+ R++ RN LL + F+ S Sbjct: 116 LFSPEDLNIIKHGPKERRRFLDSELCQLDKIYYQNLADYNRILVQRNALLKDIPFNPSLE 175 Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFD 237 +++ Q+ LG I R L+ +++ I +LTG ++ ++ Sbjct: 176 PTLDVWDMQLIRLGSHIIEQRSRFTRKLNEIVV---------GIHENLTGGREQIEIIYE 226 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVL 296 A EE+ +KL GR D + + GPHR D V I I H GS G+Q+ Sbjct: 227 PDVTA--EEFEEKLTRGRPRDLKLKTSGTGPHRDDFRVQV--NGIDIRHFGSQGQQRSAA 282 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + L+ L+ G P+LLLD++ + LD +++ L + + DI + I TG D+ + Sbjct: 283 LSLKLSEIYLVKEMIGDTPVLLLDDVLSELDRNRQKTLLQNMNDIQTLITCTGLDELI 340 >gi|15673957|ref|NP_268132.1| recombination protein F [Lactococcus lactis subsp. lactis Il1403] gi|281492578|ref|YP_003354558.1| DNA replication and repair protein RecF [Lactococcus lactis subsp. lactis KF147] gi|13959468|sp|Q9CE70|RECF_LACLA RecName: Full=DNA replication and repair protein recF gi|12725018|gb|AAK06073.1|AE006427_8 RecF protein [Lactococcus lactis subsp. lactis Il1403] gi|281376242|gb|ADA65733.1| DNA replication and repair protein RecF [Lactococcus lactis subsp. lactis KF147] Length = 358 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/330 (29%), Positives = 157/330 (47%), Gaps = 19/330 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K + + FRNY L+L F IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S+ +V G+ A ++ LE + R + N + + + L+I Sbjct: 61 I-----SWSQQEMKVSGVVEKAHATVPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RR+F+D + I + + + R ++ RN L + D ++ Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S ++ Q+AE G KI + R I+ L + E H K +L ++Q+ Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLE--VHAKKIHEQLTHGKENLKII----YNQN--- 226 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301 +K +++K+L + D +T +GPHR DL + I +A GS G+Q+ V + I L Sbjct: 227 VKTDFSKELLSRQDHDIFRHQTSVGPHRDDL--QFFINEINVADFGSQGQQRTVALSIKL 284 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKR 331 A LI TG PILLLD++ + LD ++ Sbjct: 285 AEIDLIFEETGEYPILLLDDVMSELDNHRQ 314 >gi|257875896|ref|ZP_05655549.1| recombination protein F [Enterococcus casseliflavus EC20] gi|257810062|gb|EEV38882.1| recombination protein F [Enterococcus casseliflavus EC20] Length = 370 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 171/371 (46%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++S +RNY SL L F+ IF+G+N GKTNILE+I L+ + R +S ++ Sbjct: 1 MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + AR+ G +I LE + R ++N + + + L + Sbjct: 61 IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + IDP + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238 + + Q+ G KI +AR + L+ + QK + +++ + G+ Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEAS- 234 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + +++++ K L + + + TL GPHR DL +K + GS G+Q+ + Sbjct: 235 TLEEIQQQFVKALALVKDRERFRQVTLAGPHRDDLDFLINEKNVQ-TFGSQGQQRTTALS 293 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA L+ TG P+LLLD++ + LD+ ++ L + T T + V D + Sbjct: 294 VKLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGKVQTFLTTTTLEHVKDKM 353 Query: 359 NETAKFMRISN 369 + A+ + Sbjct: 354 SVEAEIFYVEQ 364 >gi|94995364|ref|YP_603462.1| recombination protein F [Streptococcus pyogenes MGAS10750] gi|166221872|sp|Q1J443|RECF_STRPF RecName: Full=DNA replication and repair protein recF gi|94548872|gb|ABF38918.1| DNA replication and repair protein recF [Streptococcus pyogenes MGAS10750] Length = 368 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 168/362 (46%), Gaps = 12/362 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLFELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ ++ + Sbjct: 178 LDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TSIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR DL + + S G+ + +++ + +A Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ TG PILLLD++ + LD ++ L V Q F+T T D L++ + + Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351 Query: 366 RI 367 RI Sbjct: 352 RI 353 >gi|116617178|ref|YP_817549.1| DNA replication and repair protein RecF [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272621|sp|Q040E6|RECF_LEUMM RecName: Full=DNA replication and repair protein recF gi|116096025|gb|ABJ61176.1| DNA replication and repair protein RecF [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 374 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 164/352 (46%), Gaps = 15/352 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + +RNY+ L L F + +F+G+N GKTN+LE+I L+ R R +S D+ Sbjct: 1 MELESLKLDHYRNYSDLTLEFSSGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + RV+ +S+ + ++ ++N + + L + Sbjct: 61 VQWQAKE-ATISGRVKRSISETPLSLHFSNKGKKA----RVNHLEQSKLSHYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180 P + G RRRF+D ++P + ++R+++ RN RL + D+ Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYKRILKERNAYLKRLQLKQTTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFD 237 + + Q+ ++G +I IAR E +N L L + + E +KL +D D Sbjct: 176 VFLDVLSEQLVDVGSQILIARQEFLNKL-ELAAQPIHAEISDQREALKLRYMSSVDFASD 234 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S +K +A L R + M T++GPHR +L D + I GS G+Q+ + Sbjct: 235 ASLEEVKSVFADALSRQRSREIMQGSTMVGPHRDELQFDVNGNNVAI-FGSQGQQRTTAL 293 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 I LA L+ TG P+LLLD++ + LD ++ L + D Q F+T Sbjct: 294 AIKLAEIDLMQQETGEYPVLLLDDVLSELDASRQTHLLLAIQD-KVQTFITA 344 >gi|56808225|ref|ZP_00365998.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Streptococcus pyogenes M49 591] gi|209560278|ref|YP_002286750.1| recombination protein F [Streptococcus pyogenes NZ131] gi|226737844|sp|B5XJC1|RECF_STRPZ RecName: Full=DNA replication and repair protein recF gi|209541479|gb|ACI62055.1| Recombination protein F [Streptococcus pyogenes NZ131] Length = 368 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + + Sbjct: 178 LDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR DL + + S G+ + +++ + +A Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ TG PILLLD++ + LD ++ L V Q F+T T D L++ + + Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351 Query: 366 RI 367 RI Sbjct: 352 RI 353 >gi|222150257|ref|YP_002559410.1| recombination protein F [Macrococcus caseolyticus JCSC5402] gi|254790482|sp|B9E903|RECF_MACCJ RecName: Full=DNA replication and repair protein recF gi|222119379|dbj|BAH16714.1| recombination protein F [Macrococcus caseolyticus JCSC5402] Length = 369 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 11/350 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L ++ +RNY + L F + IF+G N GKTN+LEAI L+ + R ++ ++ Sbjct: 1 MKLKTLTLTHYRNYETAELNFSDEVNIFIGINAQGKTNLLEAIYCLAMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F+ +EGM ++ L + + ++N + + + E H+ + Sbjct: 61 IGWGHE-----FSHIEGMLSYKHGTMPLSLSISKKGKKAKVNYLEQKRLTEYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P + G RRRF+D + I + + +++RL++ +N LL + D Sbjct: 116 FAPEDLNLVKGSPQIRRRFIDMEIGQISAVYLNDLSNYQRLLKQKNHLLKQMKLSNSNDM 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + I Q A+ VK+ + R I L +L + +LSL ++ + Sbjct: 176 TMLEVINEQFAQYAVKLTLRRKMFIEQLETLAIPIHTGITKDKERLSLRYNASLNYELAE 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + EE + L + ++L GPHR DL D + +GS G+Q+ + I Sbjct: 236 QEMFEETIRILNANMGKEIERTQSLYGPHRDDLSFKINDIDVQ-TYGSQGQQRTTALSIK 294 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LA LI+ G PILLLD++ + LD+D++ L + Q F+T T Sbjct: 295 LAEIELINQEIGEYPILLLDDVLSELDDDRQTHLLTTIQH-KVQTFVTTT 343 >gi|42521653|ref|NP_967033.1| DNA repair and genetic recombination protein [Bdellovibrio bacteriovorus HD100] gi|39574183|emb|CAE77687.1| DNA repair and genetic recombination protein [Bdellovibrio bacteriovorus HD100] Length = 374 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 97/377 (25%), Positives = 189/377 (50%), Gaps = 22/377 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNY + L F + +F+G+NG GKTN+LEA+ +S G FR Y+D + + + Sbjct: 6 LRLVNFRNYRDVVLSFSPRVNVFLGENGQGKTNLLEAMYMISQGDSFR---YSDNSTLIN 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + ++ + ++ + D+ KL+ +S + L +ND + D + + S+ Sbjct: 63 TN--TSESVIQALITQNDLHYKLKLGLSKSRKVLTLNDKRVNSADIRKIFASVVFSPESL 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFD----SSW 182 I G + RR +D ++ D ++ + + D+ + ++ RN++L EG D + Sbjct: 121 SSIKEG-ADHRRELVDELLVTFDRKNAQLIADYRKALKTRNKILKNFLEGLQDKVVTQNL 179 Query: 183 CSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S+ Q L + AR+ ++ LS + M+Y+ + + +S+ + + S Sbjct: 180 LESLNPQFVRLATDLTHARITALHGLSKDFNNAMQYISGNS--SVDISVEYLVSDQNAVS 237 Query: 240 FCALKEEYA--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 F + E A K+L + + S +L+GPH+ D++ Y K S G+Q+ +++ Sbjct: 238 FTREEVENAITKRLRELHDAELSSGTSLVGPHKHDIVFLYGQKDSRF-FCSQGQQRAIIL 296 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 +A G P+L+LD++ + LD+ KR+AL + +I +QIF+T TD ++ +S Sbjct: 297 SFKMAQIVYHRKAHGTYPVLMLDDVLSELDKAKRDALITFLHEINTQIFVTTTDFTLPES 356 Query: 358 LN-ETAKFMRISNHQAL 373 + + + +RI + Q L Sbjct: 357 FSLDQLRVVRIKDGQIL 373 >gi|29840206|ref|NP_829312.1| recombination protein F [Chlamydophila caviae GPIC] gi|33301500|sp|Q823G6|RECF_CHLCV RecName: Full=DNA replication and repair protein recF gi|29834554|gb|AAP05190.1| recF protein [Chlamydophila caviae GPIC] Length = 367 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 105/371 (28%), Positives = 167/371 (45%), Gaps = 18/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L + FRNY + G+N GKTN+LEA+ LS GR FR + Sbjct: 1 MKILSLRLKNFRNYKEAEVSLSPDMNYIFGENAQGKTNLLEALYVLSLGRSFRTTHLTEA 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 GS FF TF + +G L T D+ + + + I+ + +L + I Sbjct: 61 IFFGSSHFFLEMTFEK----DGFCHT---LSTYVDKQGKKILCDHSPIKTLSQLIGMVPI 113 Query: 123 SWLVPSMDR-IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 L S DR + SG +RR FL+ ++ DP+++ + + R + RN LL +S Sbjct: 114 V-LFSSKDRSLISGAPADRRLFLNLLLSQCDPQYKHTLSYYHRALLQRNTLLKTK--QTS 170 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 S + Q+A LG + ++R L+ L+ E +++ L + + S Sbjct: 171 TLSVWDEQLATLGAYLTVSRYFCCEQLNQLVQELWSNSLSEQLRIKFKSSLIKQGNLSQE 230 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF- 300 A+ EE K+L D T +GPHR D + D +++A S+ QK L+ I Sbjct: 231 AIIEELRKQLTTALHRDLELGTTSVGPHREDFTLMIND--LSVAQFSSEGQKHSLLAILR 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA I N P+ +D+I A LD + + L + +G Q MT T+ SL+E Sbjct: 289 LAECLYIKNIYNACPLFCMDDIHAGLDNHRISQLLDLAPTLG-QTLMTSTNIP-HQSLSE 346 Query: 361 TAKFMRISNHQ 371 T+K ++ Q Sbjct: 347 TSKIFSVNQAQ 357 >gi|304315541|ref|YP_003850686.1| DNA replication and repair protein RecF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777043|gb|ADL67602.1| DNA replication and repair protein RecF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 362 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 168/350 (48%), Gaps = 13/350 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I F+N ++ F A + G N GK+N+LE I LS G+ FR + D+ Sbjct: 3 LKELTIDNFKNLRQQKVTFSAGTNVIYGTNAQGKSNLLECIRILSIGKSFRNSKNKDMV- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDD-RSVRCLQINDVVIRVVDELNKHLRISWL 125 +F S + ++G+ + + I +ET R ++N+ I+ + EL + + Sbjct: 62 ----NFNSDYYYIKGIFDIDNEEITVETGYKLNQNRFFKVNNNKIKSISELIGVILTTIF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS---W 182 P I G RRR++D + I + +I + +++ RN++L F S Sbjct: 118 SPDDLNIVKGSPFIRRRYMDASISMIKRNYLYDIIQYNKVLANRNKVLKNIKFKSENLKL 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ Q++ G KI + R + IN L+ ++ + + + +++ + K D Sbjct: 178 LDIMDEQLSIYGSKIMMYRKQYINNLNLIVKKILHDISDEEVEICYWSNVMDKID-DIKY 236 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +KE + KL R++D T GPHR D+ + Y + + + S G+Q+ + + + LA Sbjct: 237 IKESLSNKLKLNREIDIKYGDTRYGPHRDDIKI-YVNGHDSRIYASQGQQRTIALCLKLA 295 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +I + PILLLD++ + LD ++R + VT G Q F+T T+K Sbjct: 296 EHEMIKSENHENPILLLDDVMSELDLNRRRYILNKVT--GCQTFITHTEK 343 >gi|323128305|gb|ADX25602.1| recombination protein F [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 368 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 FDH-STVSLTGKIQRVSGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + + Sbjct: 178 LDEQLASYGTRVMEHRIDFINALEKEANTHHQAISNGLENLSLSYQSSVVFDKR-TNIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR DL + + S G+ + +++ + +A Sbjct: 237 QFLHQLKKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ TG PILLLD++ + LD ++ L V Q F+T T D L++ + + Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351 Query: 366 RI 367 RI Sbjct: 352 RI 353 >gi|332139413|ref|YP_004425151.1| Recombinational DNA repair ATPase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549435|gb|AEA96153.1| Recombinational DNA repair ATPase [Alteromonas macleodii str. 'Deep ecotype'] Length = 362 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 91/352 (25%), Positives = 168/352 (47%), Gaps = 17/352 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + I++FRN S+ L TI G+NG GK++++EA+ +L GR FR ++ V Sbjct: 1 MKLDRVQITQFRNLTSVSLSPSPALTIIKGENGSGKSSLIEALYYLGFGRSFRTNKHSSV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S FS FA + EG ++ + + + + C IN + +L + + Sbjct: 61 IQNEKDS-FSVFASCKTEEG-DELKLGFQRSRNETFTC-SINGEHSNKLSDLVSLVPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183 P + G ERRRF D +F ++ + + + + ++ RN LL + + Sbjct: 118 FTPQSTDLIIGSPSERRRFCDWGLFHVEHQFQSLANQYGKFLKHRNALLKQQANLSAPQN 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E+Q +ELG ++ R E ++ L+ + +Y Q E P+ + L+ + + D L Sbjct: 178 QYWESQFSELGESLSATRQEYVDTLTPIFKQYAQ-EFLPNFDVELSYYKGWEKD---VGL 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 E KK R+ D T GPH++D L V+ + + S G+ ++ + + + Sbjct: 234 SESLVKK----REYDGKIGHTSSGPHKADLRLKVNGVNAQELL---SRGQLRMAVAALQM 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + +L ++ T I LLD++ A LD DKR + + +Q+F+T + S Sbjct: 287 SQTKLFNSATQRKSIFLLDDVGAELDADKREQFIDGLLKMDTQVFVTAIESS 338 >gi|256389236|ref|YP_003110800.1| DNA replication and repair protein RecF [Catenulispora acidiphila DSM 44928] gi|256355462|gb|ACU68959.1| DNA replication and repair protein RecF [Catenulispora acidiphila DSM 44928] Length = 381 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 99/370 (26%), Positives = 173/370 (46%), Gaps = 20/370 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++++FR+YASL + T FVG NG GKTN++EAI +++ R A+ + Sbjct: 1 MRVTHLSLADFRSYASLDVALGGGVTAFVGPNGQGKTNLVEAIGYIATLDSHRVATDQPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+P A VE EG + +++E + R ++N + E+ LR Sbjct: 61 VRFGAPRAI-VRANVE-REGRTQL-VEIELNPGGANRA-RLNRNPVPRPREVLGVLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLVARWPRFAGVRADYDRVLKQRNTLLRTAAMARRNKA 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFLDG 234 + S + + +A G ++ AR+ +I+ALS L+ + YV+ ++ + Sbjct: 177 SGPNISTLDAWDHHLALAGAELVAARLALISALSPLVDKCYVEIAEGGQTRIGYRSTISA 236 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC----DKAITIAHGSTG 290 + D + AL E++ L + R + TL+GPHR +++++ D + S G Sbjct: 237 EPDPTAAALTEQFMTALGEARANELDRGITLVGPHRDEMVLELTSSSGDNMPARGYASHG 296 Query: 291 EQKVVLVGIFLAHARLI--SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 E + + LA L+ + G P+L+LD++ A LD +R L V+ + Sbjct: 297 ESWSYALALRLAAYDLLRSDGSDGGEPVLILDDVFAELDAKRRRRLAERVSGADQVLITA 356 Query: 349 GTDKSVFDSL 358 D V + L Sbjct: 357 AVDADVPEQL 366 >gi|21911391|ref|NP_665659.1| recombination protein F [Streptococcus pyogenes MGAS315] gi|28896763|ref|NP_803113.1| recombination protein F [Streptococcus pyogenes SSI-1] gi|25453245|sp|Q8K5G2|RECF_STRP3 RecName: Full=DNA replication and repair protein recF gi|21905607|gb|AAM80462.1| RecF protein [Streptococcus pyogenes MGAS315] gi|28812017|dbj|BAC64946.1| RecF protein [Streptococcus pyogenes SSI-1] Length = 368 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKHYRNYDQLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSQRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + + Sbjct: 178 LDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR DL + + S G+ + +++ + +A Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ TG PILLLD++ + LD ++ L V Q F+T T D L++ + + Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351 Query: 366 RI 367 RI Sbjct: 352 RI 353 >gi|19747036|ref|NP_608172.1| recombination protein F [Streptococcus pyogenes MGAS8232] gi|94991484|ref|YP_599584.1| recombination protein F [Streptococcus pyogenes MGAS10270] gi|306826422|ref|ZP_07459735.1| recombination protein F [Streptococcus pyogenes ATCC 10782] gi|25453247|sp|Q8NYZ4|RECF_STRP8 RecName: Full=DNA replication and repair protein recF gi|166221871|sp|Q1JEB8|RECF_STRPD RecName: Full=DNA replication and repair protein recF gi|19749296|gb|AAL98671.1| recF protein [Streptococcus pyogenes MGAS8232] gi|94544992|gb|ABF35040.1| DNA replication and repair protein recF [Streptococcus pyogenes MGAS10270] gi|304431386|gb|EFM34382.1| recombination protein F [Streptococcus pyogenes ATCC 10782] Length = 368 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 F-DHSTVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + + Sbjct: 178 LDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR DL + + S G+ + +++ + +A Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ TG PILLLD++ + LD ++ L V Q F+T T D L++ + + Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351 Query: 366 RI 367 RI Sbjct: 352 RI 353 >gi|125624996|ref|YP_001033479.1| recombination protein F [Lactococcus lactis subsp. cremoris MG1363] gi|166220713|sp|A2RNA8|RECF_LACLM RecName: Full=DNA replication and repair protein recF gi|124493804|emb|CAL98796.1| DNA replication and repair protein recF [Lactococcus lactis subsp. cremoris MG1363] gi|300071794|gb|ADJ61194.1| recombination protein F [Lactococcus lactis subsp. cremoris NZ9000] Length = 359 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 98/333 (29%), Positives = 156/333 (46%), Gaps = 25/333 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K + + FRNY L+L F IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MKLKQIELKNFRNYEDLKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +V G+ A ++ LE + R + N + + + L+I Sbjct: 61 IRWSGQEM-----KVSGLVEKAHATVPLEVQLSSKGRIAKANHLKENRLADYIGQLKILM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RRRF+D + I + + + R ++ RN L + D ++ Sbjct: 116 FAPENLELVKGSPATRRRFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDQAKIDKNF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQS 239 + ++ Q+AE G KI R I L + +K I LT L+ ++Q+ Sbjct: 176 LTVLDEQLAEHGNKIMFERKTFIEKLEI----HAKK-----IHEQLTHGLETLKITYNQN 226 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVG 298 +K +++K+L + D +T +GPHR DL D I +A GS G+Q+ V + Sbjct: 227 ---VKTDFSKELLSRQDHDIFRHQTTVGPHRDDLQFFIND--INVADFGSQGQQRTVALS 281 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 I LA LI TG PILLLD++ + LD ++ Sbjct: 282 IKLAEIDLIFEETGEYPILLLDDVMSELDNHRQ 314 >gi|315221608|ref|ZP_07863528.1| recombination protein F [Streptococcus anginosus F0211] gi|315189442|gb|EFU23137.1| recombination protein F [Streptococcus anginosus F0211] Length = 365 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 157/355 (44%), Gaps = 30/355 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I FRNY + + F + IF+G N GKTNILEAI FL+ R R S D+ Sbjct: 3 LKKLQIQHFRNYEATEIDFHSGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIY 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + ++ G I LE R ++N + + + ++ + Sbjct: 63 FSKDTL-----KISGQLVKQTGKISLEIDLTPKGRITKVNHLKQSKLSDYVGNMNVILFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L T D ++ + Sbjct: 118 PEDLQLIKGAPALRRKFIDIELGQIKPIYLSDLSHYHHVLKQRNTYLKTAKTIDETFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGKFDQSFCA-- 242 ++ Q+ E G ++ R+E + L E+F K L L+ L+ +C+ Sbjct: 178 LDDQLVEFGCRVMQHRIEFLKKL----------EHFGQQKHLELSSHLEN-LTIKYCSSV 226 Query: 243 -------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 LKE + L R D + T +GPHR D + +C + GS G+ + V Sbjct: 227 PLSDSNKLKESFQIALKQSRSRDLFKKNTGVGPHRDD--IAFCINDMNANFGSQGQHRSV 284 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 ++ + LA L+ T PILLLD++ + LD ++ L ++ Q FMT T Sbjct: 285 VLSLKLAEIELMETVTKEKPILLLDDVMSELDNSRQLNLLETISQ-NIQTFMTTT 338 >gi|255283817|ref|ZP_05348372.1| RecF protein [Bryantella formatexigens DSM 14469] gi|255265700|gb|EET58905.1| RecF protein [Bryantella formatexigens DSM 14469] Length = 360 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 163/359 (45%), Gaps = 32/359 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + + +FRNY SL+L FD+ IF GDN GKTNILEA+ + R + +V + Sbjct: 3 VQSIELEKFRNYKSLKLKFDSGTNIFYGDNAQGKTNILEAVYLCGTTKSHRGSKDREVIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + R++ I I + + ++ + + IN V IR EL + Sbjct: 63 FQEE---ESHLRMKVERNNVPIEIDMHLKKNKP-KGIAINGVPIRKASELFGIANFVFFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P I RR F+D + + + + ++ +++ RNRLL E F ++ Sbjct: 119 PEDLNIIKDGPSVRRHFIDMELCQLHKVYLHHLSNYNKVINQRNRLLKESAFRPDILDTL 178 Query: 187 ---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-------F 236 + QMAE G K+ R I L+ +I S+ G L G+ + Sbjct: 179 DIWDIQMAEYGKKVIEERRAFIRRLNEIID-------------SIHGRLTGEKEHLRIIY 225 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVV 295 +++ A EE+A+ L R+ D + ++ GPHR D+ + + I GS G+Q+ Sbjct: 226 EENVTA--EEFAEALRSSREKDLRMKMSMTGPHRDDIC--FQTNGVDIRKFGSQGQQRTA 281 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + L+ L+ G PILLLD++ + LD ++ L + DI + I TG D V Sbjct: 282 ALSLKLSEIELVKQEIGDTPILLLDDVLSELDSSRQKYLLDSIHDIQTFITCTGLDDFV 340 >gi|219847382|ref|YP_002461815.1| DNA replication and repair protein RecF [Chloroflexus aggregans DSM 9485] gi|254790467|sp|B8G3J6|RECF_CHLAD RecName: Full=DNA replication and repair protein recF gi|219541641|gb|ACL23379.1| DNA replication and repair protein RecF [Chloroflexus aggregans DSM 9485] Length = 392 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 102/390 (26%), Positives = 177/390 (45%), Gaps = 29/390 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + +FRNY + + G N GKT++LEAI +L+ R R +S D+ R Sbjct: 3 IHHLALRDFRNYRRQDVALSPTTILLYGPNAAGKTSLLEAIFYLATTRSPRLSSDRDLVR 62 Query: 67 ------IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV------VD 114 G+P F A VE G + I ++ R D + L ++R+ Sbjct: 63 WDAVGEAGAPPFARIAADVERRIGPVRLEILVQRRLDDGGQPLNGAQKLVRIDKRPARAI 122 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 +L LR+ P+ + G ERRR+LD + +DP + R + +++++ RN LL Sbjct: 123 DLIGQLRVVLFTPTDVMLVDGPPAERRRYLDITLSQLDPHYVRTLAYYQKILLQRNSLLR 182 Query: 175 EGYFDSSWCSSIEAQM-------AELGVKINIARVEMINALSSLIMEYVQK----ENFPH 223 +++A++ A G + R+ + LS+L +K E+ Sbjct: 183 AWREQRRLPRNVDAELGYWDQELAAAGGYLLAERLRAVVELSALAGSIYRKISGGEHELQ 242 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAI 282 I+ + LD D A E + F ++ D ++R +TL GPHR DL+ + + Sbjct: 243 IEYIASCDLDAARDAGSLA---ERLRLAFAAQRTDELARGQTLCGPHRDDLVFNVAGVNL 299 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 +GS G+Q+ + + + + A L+ G AP+LLLD++ + LD +R L ++ Sbjct: 300 G-RYGSRGQQRTIALALKIGEAELMQQRGGDAPVLLLDDVLSELDNRRRMHLLDLILRPQ 358 Query: 343 SQIFMTGTDKSVFDS-LNETAKFMRISNHQ 371 Q +T T+ S F + A+ R+ + Q Sbjct: 359 QQTLLTATNLSDFSADFLAAARRFRVEDGQ 388 >gi|50915219|ref|YP_061191.1| recombination protein F [Streptococcus pyogenes MGAS10394] gi|73914003|sp|Q5X9A5|RECF_STRP6 RecName: Full=DNA replication and repair protein recF gi|533080|gb|AAA85783.1| RecF protein [Streptococcus pyogenes] gi|50904293|gb|AAT88008.1| RecF [Streptococcus pyogenes MGAS10394] Length = 368 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 F-DHSTVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + + Sbjct: 178 LDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR DL + + S G+ + +++ + +A Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ TG PILLLD++ + LD ++ L V Q F+T T D L++ + + Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351 Query: 366 RI 367 RI Sbjct: 352 RI 353 >gi|302669378|ref|YP_003829338.1| DNA replication and repair protein RecF [Butyrivibrio proteoclasticus B316] gi|302393851|gb|ADL32756.1| DNA replication and repair protein RecF [Butyrivibrio proteoclasticus B316] Length = 372 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 173/365 (47%), Gaps = 33/365 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L +++FRNY ++++ F + I GDN GKTNILEAI + + + + ++ R Sbjct: 3 IKSLELADFRNYENVKIDFSSGTNILYGDNAQGKTNILEAIFVSATTKSHKGSKDKEIIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + T + E D+ ++ + + I+ I+ +L L + + Sbjct: 63 FGKDEAHIRTILEKDNAEYRVDMHLR-----SSKTKGIAIDGQKIKRASDLIGMLNVVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---FDSSW 182 P I ERRRF+D + +D + + + +L+ RN++L + Y +S Sbjct: 118 SPEDLSIIKNGPSERRRFMDMELCQLDQIYLNSLSKYNKLVVERNKVLKDLYEHPENSVL 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQS 239 + Q+ E G I R + I L+ +I +K LTG FL ++ + Sbjct: 178 LDVQDKQLCEYGSVIIKTREKFIRDLNEIIRPIHEK---------LTGNKEFLSVYYEPN 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDY----CD---KAITI-AHGST 289 A +E+ KKL R+ D+ +++T +GPH+ D +V CD + I I +GS Sbjct: 229 VSA--DEFEKKLRAARQKDTYAKQTTVGPHKDDFSFVVQKKKADCDEYGEGIDIRKYGSQ 286 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ + + L+ ++ P+LLLD++ + LD +++N L + DI + + TG Sbjct: 287 GQQRTASLSLKLSEIEIVKRAKKENPVLLLDDVLSELDSNRQNYLLNTIGDIQTIVTCTG 346 Query: 350 TDKSV 354 D+ V Sbjct: 347 LDEFV 351 >gi|322392439|ref|ZP_08065899.1| recombination protein F [Streptococcus peroris ATCC 700780] gi|321144431|gb|EFX39832.1| recombination protein F [Streptococcus peroris ATCC 700780] Length = 363 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 170/377 (45%), Gaps = 32/377 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+I +FRNY + F+ + +FVG N GKTN+LE+I FL+ R R + ++ + Sbjct: 3 LKNLSIKQFRNYRDTEIEFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNLIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F +V G+ +I LE + R ++N + + + H+ + Sbjct: 63 -----FEEEKLQVSGILQKKTATIPLEIDLTQKGRITKVNHLKQARLSDYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D ++ S Sbjct: 118 PEDLQLVKGAPAIRRKFIDMELGQIKPIYLSDLSSYNHILKQRNTYLKSSQNIDDTFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---- 241 ++ Q+ E G ++ I R + I ME K+ H +S D + S C Sbjct: 178 LDDQLVEYGCRVMIHRADFIQK-----MELFGKKK--HFDIS-----DQLEELSICYQPS 225 Query: 242 -------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 L + + L R D + T +GPHR D+I + I + GS G+ + Sbjct: 226 VNFIDKEHLADSFHTALQKSRSRDLFKKNTGVGPHRDDMI--FLINGIDASFGSQGQHRS 283 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 +++ I LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T Sbjct: 284 LVLSIKLAEIELMESITKESPILLLDDVMSELDNTRQLKLLETISH-NIQTFITTTSLDH 342 Query: 355 FDSLNETAKFMRISNHQ 371 +L +T ++N Q Sbjct: 343 LQNLPDTLSVFTVNNGQ 359 >gi|166157052|emb|CAO79509.1| DNA replication and repair protein RecF [uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11] Length = 352 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 95/341 (27%), Positives = 163/341 (47%), Gaps = 20/341 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L ++ RN+ L L+FD T+ GDNG GK+ ILEAI LS G+ D+ Sbjct: 1 MKILNLKLTNLRNHTKLSLIFDNNVTLITGDNGSGKSTILEAIHILSVGKSKISKYDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADIS---IKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + G F S A +E + ++ IK E ++ S++ +IN V + + Sbjct: 61 IQYGK-KFCSINADIETKDDRFNMELQIIKNEDFENASIKKARINKVA-KSIQYFAGIFN 118 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYF 178 P ++ +G ERR+++D + +D ++R + D+ + +R RN+LL +G+ Sbjct: 119 SVLFSPQDIQLITGSPSERRKYVDETLSQVDIEYKRSLNDYLKAVRQRNKLLEKINQGFG 178 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 QM + G I R +M + +++E + N KL L K + Sbjct: 179 GQGEIEFYTHQMLKNGEIIQRKREQMFADIKPILLETGKILNDKKTKLELNY---KKNEI 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S L E F R++ +M+ +L+GPHR D + + D +T GS GEQ+ ++ Sbjct: 236 SIERLNE------FKSREIAAMT--SLLGPHRDDFEIHFNDHNVT-NFGSRGEQRSCVLS 286 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + +A I P+LLLD+I + LD+ + A+F ++ Sbjct: 287 LKIAEISFIEKKKNDKPVLLLDDIFSELDKKHQTAVFDVIN 327 >gi|290581413|ref|YP_003485805.1| putative RecF protein [Streptococcus mutans NN2025] gi|254998312|dbj|BAH88913.1| putative RecF protein [Streptococcus mutans NN2025] Length = 363 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 98/374 (26%), Positives = 169/374 (45%), Gaps = 20/374 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ +N+ +RNY ++ F +FVG N GKTN LEAI FLS R R S ++ + Sbjct: 3 IEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G V G+ + I LE R +IN + + + + + Sbjct: 63 FGQKEL-----NVSGLLNRVNGKIPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L +E D+ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQRNAYLKSEKKVDTDFLFV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLSLTGFLDGKFDQSF 240 ++ Q+ + G K+ R++ I L+ +Y Q+E H+K+S + KFD Sbjct: 178 LDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQE---HLKISYLSSV--KFDHK- 231 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +++ + L R+ D + T +GPHR DL + + GS G+ + +++ + Sbjct: 232 KNIRDNFLNLLQKNRQGDIFKKNTSVGPHRDDLA--FFINQMNANFGSQGQHRSLILSLK 289 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA LI TG PILLLD++ + LD ++ L + D Q F+T T L + Sbjct: 290 LAEIELIKTVTGDYPILLLDDVMSELDNYRQIKLLEGIKD-NVQTFITTTSLEHLQQLPK 348 Query: 361 TAKFMRISNHQALC 374 K I+ + L Sbjct: 349 KLKLFTINQGKVLS 362 >gi|169351629|ref|ZP_02868567.1| hypothetical protein CLOSPI_02410 [Clostridium spiroforme DSM 1552] gi|169291851|gb|EDS73984.1| hypothetical protein CLOSPI_02410 [Clostridium spiroforme DSM 1552] Length = 365 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 171/351 (48%), Gaps = 20/351 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K LN+ FRNY+ + F I +G+NG GKTN++EAI LS G+ FR S+ + Sbjct: 3 VKSLNLYNFRNYSHFVIDFSQDINILIGNNGQGKTNLIEAIYLLSVGKSFR--SHVNKQM 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 I F + FAR++G LE + + +I++ I + E L + + Sbjct: 61 I---MFDNEFARIKGKVISNSKQRNLEIILGSNFKNAKIDNQDIHKISEFVGLLNVVVFI 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRF+D + I P + + + L++ RN+ L + + Sbjct: 118 PDDLYLVKGNPSNRRRFIDLEISKISPIYVFNLSKYSNLLKERNKYLKILNKKNSSGDEY 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 ++ Q+++L V++ R++ I+ L SLI + + +++ IKL + FL K D + Sbjct: 178 LEVLDEQLSKLQVELIKKRLQFISRLDQKVSLIYQKIAQKDNEAIKLRYSCFL--KDDLN 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + + Y K + D ++ IG H+ DL + Y + + S G+Q+ V++ + Sbjct: 236 YENILNLYKK----NHRRDIKYMQSHIGIHKDDLKI-YMNDNDACLYASQGQQRTVVLSL 290 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +A LI G P+LLLD++ + LD+ ++N L I+ Q F+T T Sbjct: 291 KIALIELIKEEIGEYPVLLLDDVLSELDKTRKNMLLDILNQ-KIQTFITTT 340 >gi|326407512|gb|ADZ64583.1| DNA replication and repair protein RecF [Lactococcus lactis subsp. lactis CV56] Length = 358 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/330 (29%), Positives = 157/330 (47%), Gaps = 19/330 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K + + FRNY L+L F IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S+ +V G+ A ++ LE + R + N + + + L+I Sbjct: 61 I-----SWSQQEMKVSGVVEKAHATVPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RR+F+D + I + + + R ++ RN L + D ++ Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S ++ Q+AE G KI + R I+ L + E H K +L ++Q+ Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLE--VHAKKIHEQLTHGKENLKII----YNQN--- 226 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301 +K +++K+L + D +T +GPHR DL + I +A GS G+Q+ V + I L Sbjct: 227 VKTDFSKELLIRQDHDIFRHQTSVGPHRDDL--QFFINEINVADFGSQGQQRTVALSIKL 284 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKR 331 A LI TG PILLLD++ + LD ++ Sbjct: 285 AEIDLIFEETGEYPILLLDDVMSELDNHRQ 314 >gi|251783552|ref|YP_002997857.1| recombination protein F [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392184|dbj|BAH82643.1| recombination protein F [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 368 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKYYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 FDH-STVSLTGKIQRVSGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + + Sbjct: 178 LDEQLASYGTRVMEHRIDFINALEKEANTHHQAISNGLENLSLSYQSSVVFDKR-TNIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR DL + + S G+ + +++ + +A Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ TG PILLLD++ + LD ++ L V Q F+T T D L++ + + Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351 Query: 366 RI 367 RI Sbjct: 352 RI 353 >gi|303240060|ref|ZP_07326581.1| DNA replication and repair protein RecF [Acetivibrio cellulolyticus CD2] gi|302592329|gb|EFL62056.1| DNA replication and repair protein RecF [Acetivibrio cellulolyticus CD2] Length = 372 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 172/355 (48%), Gaps = 12/355 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + FRNY + F + I G+N GKTNI+EAI + GR R + ++ Sbjct: 3 IDSLQLRNFRNYKENVIDFSKNYNIIYGENAQGKTNIVEAIFLCASGRSHRTSKDIELVN 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 I S S+ + E +I I E R+ + V ++IN++ ++ + L +L Sbjct: 63 INSNSYDIKLDATKNQEK-TNIEISYE-REKKKV--IKINEIPLKKMGNLMGNLLAVIFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + + +RRRF+D + I P + + + +++ RN LL E + ++ Sbjct: 119 PEDLSVINEGPSQRRRFIDITLSQIKPSYFYDLQLYNKILLQRNSLLKELQNNRGLIDTL 178 Query: 187 ---EAQMAELGVKINIARVEMINAL--SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + ++A++G +I AR E IN L ++ + +N +I+++ + ++ + Sbjct: 179 DIWDEKIADIGSRIIKARHEFINRLNKAAKYNHSILSDNNENIEINYSSSVETDNYEDID 238 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +K R ++ TL GPHR D + + + + GS G+++ V++ I L Sbjct: 239 KIKANILMDFKRYRYIELKRNTTLKGPHRDDYEI-FINNLDVKSFGSQGQKRTVILSIKL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + ++I TG P+LLLD++ + LD +R LF + I Q F+T T+K +FD Sbjct: 298 SELQIIKEETGEYPVLLLDDVMSELDYKRREILFDNINHI--QTFITCTEKDIFD 350 >gi|291561641|emb|CBL40440.1| DNA replication and repair protein RecF [butyrate-producing bacterium SS3/4] Length = 361 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 165/358 (46%), Gaps = 30/358 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + +S++RNY+ L + F + GDN GKTNILEA+ S + R + ++ R Sbjct: 3 IESIELSDYRNYSHLHIDFHKGTNVLYGDNAQGKTNILEAVYVCSTTKSHRGSKDKEIIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ S R +G+ D+ +K + + +N V I+ EL + + + Sbjct: 63 FGADESHIKMMVRRDGIPYRIDMHLK-----KNKAKGVAVNGVPIKKASELFGIVNVIFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + ++ + + + + + RN+LL + +++S + Sbjct: 118 SPEDLNIIKNGPAERRRFVDLELCQLNRLYVYNLAQYNKTVIQRNKLLKDIDYNTSLKET 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241 + Q+ + G ++ I R E I L+ LI E I L+G GK S Sbjct: 178 LPMWNEQLLKYGTELIIMRSEFIKELNPLIAE---------IHAGLSG---GKETLSIAY 225 Query: 242 ---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVL 296 E + ++L + + R+TL GPHR DL IV+ D GS G+Q+ Sbjct: 226 EPNVSPENFREQLAKNQFQEIRQRQTLTGPHRDDLNFIVNGTD---IRRFGSQGQQRTAA 282 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + LA L+ P+LLLD++ + LD ++ L +T I + I TG D+ V Sbjct: 283 LSLKLAEIELVKKIVKDYPVLLLDDVLSELDSKRQEHLLSEITHIQTLITCTGLDEFV 340 >gi|158319063|ref|YP_001511570.1| DNA replication and repair protein RecF [Alkaliphilus oremlandii OhILAs] gi|166918719|sp|A8MEA3|RECF_ALKOO RecName: Full=DNA replication and repair protein recF gi|158139262|gb|ABW17574.1| DNA replication and repair protein RecF [Alkaliphilus oremlandii OhILAs] Length = 365 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/346 (24%), Positives = 164/346 (47%), Gaps = 9/346 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +RNY + L F + +F+GDN GKTN++E+I S G+ FR ++ Sbjct: 3 VEELKLINYRNYEQMNLKFHPRLNVFIGDNAQGKTNLIESIYLCSAGKSFRTNHDQELIN 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + V+ + +D+ I++ +R + L++N + + + EL +L + Sbjct: 63 MNKK---QAYIHVKVKKVHSDVHIEVRLNSERK-KDLKVNQIPLVKMGELLGNLNVVLFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P ++ ERRRF+DR + I + + + ++++ RN+LL Sbjct: 119 PEDLKLVKEGPSERRRFMDREISQISTKFYYTLSQYNKILQHRNKLLKYNKGKEIDIEVW 178 Query: 187 EAQMAELGVKINIARVEMINALSSL--IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A G + + R I +S L +M E+ ++++ + K + +K Sbjct: 179 DEQLAAAGAWLIVYRRNFIKKISILAKLMHRKITESIENLEVIYEPNVKVKENDEVDVIK 238 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ + L + +D T GPHR D+I+ + +GS G+Q+ ++ + LA Sbjct: 239 EKILQNLKENFNVDKQRGLTTCGPHRDDMILKINGLDVK-TYGSQGQQRTAVLSLKLAEL 297 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 L+ G PILLLD++ + LD +++ L + + Q F+T T Sbjct: 298 ELVKGEVGEYPILLLDDVMSELDSKRQHYLIHNLKSV--QTFITTT 341 >gi|24380484|ref|NP_722439.1| recombination protein F [Streptococcus mutans UA159] gi|51316462|sp|Q8DRR3|RECF_STRMU RecName: Full=DNA replication and repair protein recF gi|24378515|gb|AAN59745.1|AE015036_4 putative RecF protein, ATPase involved in DNA repair [Streptococcus mutans UA159] Length = 363 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 97/374 (25%), Positives = 169/374 (45%), Gaps = 20/374 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ +N+ +RNY ++ F +FVG N GKTN LEAI FLS R R S ++ + Sbjct: 3 IEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G V G+ + I LE R +IN + + + + + Sbjct: 63 FGQKEL-----NVSGLLNRVNGKIPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L +E D+ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQRNAYLKSEKKVDTDFLFV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLSLTGFLDGKFDQSF 240 ++ Q+ + G K+ R++ I L+ +Y Q+E H+K+S + KFD Sbjct: 178 LDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQE---HLKISYLSSV--KFDHK- 231 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +++ + L R+ D + T +GPHR DL + + + GS G+ + +++ + Sbjct: 232 KNIRDNFLNLLQKNRQGDIFKKNTSVGPHRDDLA--FFINQMNASFGSQGQHRSLILSLK 289 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L TG PILLLD++ + LD ++ L + D Q F+T T L + Sbjct: 290 LAEIELTKTVTGDYPILLLDDVMSELDNYRQIKLLEGIKD-NVQTFITTTSLEHLQQLPK 348 Query: 361 TAKFMRISNHQALC 374 K I+ + L Sbjct: 349 KLKLFTINQGKVLS 362 >gi|326802620|ref|YP_004320438.1| DNA replication and repair protein RecF [Aerococcus urinae ACS-120-V-Col10a] gi|326650777|gb|AEA00960.1| DNA replication and repair protein RecF [Aerococcus urinae ACS-120-V-Col10a] Length = 372 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 89/350 (25%), Positives = 159/350 (45%), Gaps = 13/350 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + +FRNY + + FD +F+GDN GKTN++EAI LS R R A +V R Sbjct: 3 LKSLYLKDFRNYDQVTMDFDPGINVFIGDNAQGKTNLIEAIYMLSLARSHRTAKEREVIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + FAR+EG + I L + + ++N + + + + Sbjct: 63 FG-----ADFARIEGRVAKKNGEIPLSLTMTKKGKIAKLNRLQQERLSDYIGAFNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P + G RR F+DR + ++P + +++ L++ RN L + D + Sbjct: 118 PEDLELVKGAPQLRRTFIDRELSQMNPTYLYDSSNYQHLLKQRNTYLKQLQRREAHDKLY 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + Q+ + ++ + R + I L + + + L+L D++ Sbjct: 178 LNVLTEQLVDFASRMMVQRFQFIQKLEAYAKPIHAQLSMDKETLTLAYQASLTVDETSTV 237 Query: 243 --LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 LK E K ++ + T IGP R DL + DK + +GS G+Q+ ++ + Sbjct: 238 DQLKTELMDKFQSIQEREIEVGSTQIGPQRDDLKLMINDKVVQ-QYGSQGQQRTTVLSLK 296 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LA + T G PILLLD++ + LD+ ++ L + + + Q F+T T Sbjct: 297 LAEIECMHETLGEYPILLLDDVLSELDDQRQTHLLKTI-EKKVQTFLTTT 345 >gi|239624130|ref|ZP_04667161.1| DNA replication and repair protein RecF [Clostridiales bacterium 1_7_47_FAA] gi|239520516|gb|EEQ60382.1| DNA replication and repair protein RecF [Clostridiales bacterium 1_7_47FAA] Length = 361 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 94/354 (26%), Positives = 160/354 (45%), Gaps = 22/354 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY L + F+ I GDN GKTNILEA+ + + A D+ R Sbjct: 3 IESIELKNYRNYQELHMEFNQGTNILYGDNAQGKTNILEAVYVCCTSKSHKSAKDRDIIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 S R + D+ +K + + IN V IR EL + + Sbjct: 63 FDQDESHIKLQIRKNNVPYRIDMHLK-----KNKPKGIAINGVPIRKASELFGIANVVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + ++ + ++ + +++ RN+LL E +F + + Sbjct: 118 SPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLLQRNKLLKELFFKPEYEET 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFC 241 ++ Q+ G ++ R E I+ L+ +I + I LSL+G + + Sbjct: 178 LDVWDMQLVNYGKEVIRFRREFIDRLNEIIQD---------IHLSLSGNKEAIRISYEPY 228 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIF 300 L++++ + L R D + TL GPHR D + + I I GS G+Q+ + + Sbjct: 229 TLEDQFEQTLKKNRPQDMKQKTTLSGPHRDD--ISFIVNGIDIRRFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 L+ L+ + PILLLD++ + LD ++N L + DI + I TG D V Sbjct: 287 LSELELVKAVSRDNPILLLDDVLSELDSSRQNHLLSAIQDIQTMITCTGLDDFV 340 >gi|227432903|ref|ZP_03914847.1| recombination protein F [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351336|gb|EEJ41618.1| recombination protein F [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 374 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 91/352 (25%), Positives = 164/352 (46%), Gaps = 15/352 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + +RNY+ L L F + +F+G+N GKTN+LE+I L+ R R +S D+ Sbjct: 1 MELESLKLDHYRNYSDLTLEFSSGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + RV+ +S+ + ++ ++N + + L + Sbjct: 61 VQWQAKE-ATISGRVKRSISETPLSLHFSNKGKKA----RVNHLEQSKLSHYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180 P + G RRRF+D ++P + ++++++ RN RL + D+ Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYKQILKERNAYLKRLQLKQTTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFD 237 + + Q+ ++G +I IAR E +N L L + + E +KL +D D Sbjct: 176 VFLDVLSEQLVDVGSQILIARQEFLNKL-ELAAQPIHAEISNQREALKLRYMSSVDFASD 234 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S +K +A L R + M T++GPHR +L D + I GS G+Q+ + Sbjct: 235 ASLEEVKSVFADALSRQRSREIMQGSTMVGPHRDELQFDVNGNNVAI-FGSQGQQRTTAL 293 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 I LA L+ TG P+LLLD++ + LD ++ L + D Q F+T Sbjct: 294 AIKLAEIDLMQQETGEYPVLLLDDVLSELDASRQTHLLLAIQD-KVQTFITA 344 >gi|148656558|ref|YP_001276763.1| DNA replication and repair protein RecF [Roseiflexus sp. RS-1] gi|148568668|gb|ABQ90813.1| DNA replication and repair protein RecF [Roseiflexus sp. RS-1] Length = 398 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 95/382 (24%), Positives = 179/382 (46%), Gaps = 32/382 (8%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + + L++ +FRNY L L + + G N GKT +LEAI FL+ R R + Sbjct: 1 MVAGMHVSHLSLRDFRNYERLDLTLEPGVILLYGPNAAGKTTVLEAIYFLATTRSPRAGA 60 Query: 61 YADVTR------IGSPSFFSTFARVEGMEGLADISIKLETRDDR--------SVRCLQIN 106 ++ R IG P F V +G + + ++ R D +++ ++++ Sbjct: 61 DRELVRFEAQGDIGVPPFARLVCDVVRADGRVRLEVVVQRRSDEESPGSISPTIKTVRVD 120 Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 +R +D L +LR+ P+ + +G ERRR+LD + I+ R+ R + +++++ Sbjct: 121 RKTVRALD-LVGNLRVVLFTPADIALVTGAPAERRRYLDVTLSQIEGRYVRTLAHYQKVV 179 Query: 167 RGRNRLLTEGY-------FDSSWCSSIEAQMAELGVKINIARVEMI---NALSSLIMEYV 216 + RN LL + + + ++A G + R+ + NAL+ + + Sbjct: 180 QQRNSLLRAWRDGRRPLRYAGDELAFWDRELAMAGAYLLRERLRAVVDLNALAGPLYCRM 239 Query: 217 QKENFPHI---KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 + P + + S+ G +D D +++ + L R + +TLIGPHR DL Sbjct: 240 SGSDTPLVVTYQSSVAG-IDPASDSRM--IEQAFLAHLVHLRDDEIGRGQTLIGPHRDDL 296 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 ++ + + A+GS G+Q+ + + L A L+ TG P+LLLD++ + LD ++R Sbjct: 297 LITVGNIPMG-AYGSRGQQRSATLALKLGEAELMRARTGDTPVLLLDDVLSELDAERRAY 355 Query: 334 LFRIVTDIGSQIFMTGTDKSVF 355 + ++ G Q +T T F Sbjct: 356 VQDVIERPGQQTIVTATGTDDF 377 >gi|15675937|ref|NP_270111.1| recombination protein F [Streptococcus pyogenes M1 GAS] gi|71911668|ref|YP_283218.1| recombination protein F [Streptococcus pyogenes MGAS5005] gi|81171138|sp|P0C0D1|RECF_STRP1 RecName: Full=DNA replication and repair protein recF gi|13623177|gb|AAK34832.1| RecF protein [Streptococcus pyogenes M1 GAS] gi|71854450|gb|AAZ52473.1| DNA replication and repair protein [Streptococcus pyogenes MGAS5005] Length = 368 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 91/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + + Sbjct: 178 LDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR +L + + S G+ + +++ + +A Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDELA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ TG PILLLD++ + LD ++ L V Q F+T T D L++ + + Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351 Query: 366 RI 367 RI Sbjct: 352 RI 353 >gi|239993752|ref|ZP_04714276.1| Recombinational DNA repair ATPase [Alteromonas macleodii ATCC 27126] Length = 362 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 90/352 (25%), Positives = 167/352 (47%), Gaps = 17/352 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + I++FRN S+ L TI G+NG GK++++EA+ +L GR FR ++ V Sbjct: 1 MKLDRVQITQFRNLTSVSLSPSPALTIIKGENGSGKSSLIEALYYLGFGRSFRTNKHSSV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S FS FA + EG ++ + + + + C IN + +L + + Sbjct: 61 IQNEKDS-FSVFASCKTEEG-DELKLGFQRSRNETFTC-SINGEHSNKLSDLVSLVPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183 P + G ERRRF D +F ++ + + + + ++ RN LL + + Sbjct: 118 FTPQSTDLIIGSPSERRRFCDWGLFHVEHQFQSLANQYGKFLKHRNALLKQQANLSAPQN 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E+Q +ELG ++ R E ++ L+ + +Y Q E P+ + L+ + + D L Sbjct: 178 QYWESQFSELGESLSATRQEYVDTLTPIFKQYAQ-EFLPNFDVELSYYKGWEKD---VGL 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 E KK R+ D T GPH++D L V+ + + S G+ ++ + + + Sbjct: 234 SESLVKK----REYDGKIGHTSSGPHKADLRLKVNGVNAQELL---SRGQLRMAVAALQM 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + +L + T I LLD++ A LD DKR + + +Q+F+T + + Sbjct: 287 SQTKLFNKATQRKSIFLLDDVGAELDADKREQFIDGLLKMDTQVFVTAIEST 338 >gi|228474213|ref|ZP_04058950.1| DNA replication and repair protein RecF [Staphylococcus hominis SK119] gi|228271908|gb|EEK13245.1| DNA replication and repair protein RecF [Staphylococcus hominis SK119] Length = 371 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 97/379 (25%), Positives = 167/379 (44%), Gaps = 29/379 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY ++ L + I +G+N GKTN+LE+I L+ + R A+ ++ Sbjct: 1 MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYVLALAKSHRTANDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNSEYAKIEGELSYRHGTMPLTMYITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKTDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q A+ + + + R + I L +L E + P IKLS T Sbjct: 176 TMLEVLNQQFAQYALNVTLRREQFIEELEALAQPIHAGITNQRETLSLTYLPSIKLSDTS 235 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + L EY + R+MD L GPHR DL + D +GS G Sbjct: 236 KNKSELLDEVITLLNEYQQ-----REMDRAV--CLYGPHRDDLGFNVNDMDAQ-TYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTI-QYKVQTFVTTT 346 Query: 351 DKSVFD-SLNETAKFMRIS 368 D + AK RI+ Sbjct: 347 SVDGIDHEIMNNAKLYRIN 365 >gi|139474624|ref|YP_001129340.1| recombination protein F [Streptococcus pyogenes str. Manfredo] gi|166221873|sp|A2RH21|RECF_STRPG RecName: Full=DNA replication and repair protein recF gi|134272871|emb|CAM31153.1| DNA replication and repair protein RecF [Streptococcus pyogenes str. Manfredo] Length = 368 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/345 (25%), Positives = 159/345 (46%), Gaps = 9/345 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 F-DHSTVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + + Sbjct: 178 LDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR DL + + S G+ + +++ + +A Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 L+ TG PILLLD++ + LD ++ L V Q F+T T Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTT 339 >gi|171912992|ref|ZP_02928462.1| recombination protein F [Verrucomicrobium spinosum DSM 4136] Length = 356 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 159/346 (45%), Gaps = 24/346 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++++ + +FR + RL + T+ VG NG GKT++LEA L + R ++ +D+ R Sbjct: 3 LEWMQVRDFRCFTEARLALHPETTLLVGKNGQGKTSLLEAACVLMRLQSPRTSTRSDLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDELNKHLRISWL 125 G+ + + EG+ G KL + R + +ND V R D L + R+ W+ Sbjct: 63 FGAQTCVT-----EGVVG----GRKLRVAQSPTARRVAVNDSVCPRAGDYLIQSARVVWM 113 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 S + G + RRR+LD + P + + +ER +R RN LL SW Sbjct: 114 DHSDMNLARGGAEHRRRYLDFAAAQLFPEYLNALKSYERALRSRNFLLKRDAV-ISW-RQ 171 Query: 186 IEAQ---MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++A +AE G I R E++ + + E H+ LS G G Sbjct: 172 VDAYGRILAEHGAAIRRCRDELVQRVQEPVTE-------AHLGLS-AGVEPGAVAYVPGY 223 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E+ L + R ++ R T +G HR DL + + A S G+Q+ + + + LA Sbjct: 224 PGEDLEAALMEVRDSEARLRTTQVGVHRDDLALTIHGRPAG-AFASEGQQRTLCLALKLA 282 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 AR++ G P+LL+D+I LD+ +R AL + G +I T Sbjct: 283 QARVLEEAQGEPPLLLIDDIFGELDKTRRQALLAYLPAHGQKIITT 328 >gi|94989496|ref|YP_597597.1| recombination protein F [Streptococcus pyogenes MGAS9429] gi|166221870|sp|Q1JJC0|RECF_STRPC RecName: Full=DNA replication and repair protein recF gi|94543004|gb|ABF33053.1| DNA replication and repair protein [Streptococcus pyogenes MGAS9429] Length = 368 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 91/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + + Sbjct: 178 LDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR +L + + S G+ + +++ + +A Sbjct: 237 QFLYQLEKNHQKDFFRKNTSVGPHRDELA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ TG PILLLD++ + LD ++ L V Q F+T T D L++ + + Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351 Query: 366 RI 367 RI Sbjct: 352 RI 353 >gi|160941458|ref|ZP_02088793.1| hypothetical protein CLOBOL_06349 [Clostridium bolteae ATCC BAA-613] gi|158435604|gb|EDP13371.1| hypothetical protein CLOBOL_06349 [Clostridium bolteae ATCC BAA-613] Length = 361 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 156/354 (44%), Gaps = 28/354 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY L + F+ I GDN GKTNILEA+ + + A D+ R Sbjct: 3 IESIELKNYRNYKELHMEFNQGTNILYGDNAQGKTNILEAVYVCCTSKSHKSAKDRDIIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 S R + D+ +K + + IN V IR EL + + Sbjct: 63 FNQDESHIKLQIRKNNVPYRIDMHLK-----KNKPKGIAINGVPIRKASELFGIANVVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + ++ + ++ + +++ RN+LL E +F + + Sbjct: 118 SPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLLQRNKLLKELFFRPEYEET 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241 ++ Q+ G ++ R E I L+ +I I LSLTG G+ D S Sbjct: 178 LDVWDMQLVNYGREVIKFRREFIKQLNEIIHA---------IHLSLTG---GREDISISY 225 Query: 242 ---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLV 297 +++ L R D + TL GPHR D + + I I GS G+Q+ + Sbjct: 226 EPFTREDQMEDILKKNRAQDMKQKTTLSGPHRDD--ISFIVNGIDIRRFGSQGQQRTAAL 283 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + L+ +L+ + PILLLD++ + LD ++N L + I + I TG D Sbjct: 284 SLKLSELQLVKQLSHDDPILLLDDVLSELDSSRQNHLLSAIKHIQTMITCTGLD 337 >gi|71904550|ref|YP_281353.1| recombination protein F [Streptococcus pyogenes MGAS6180] gi|94993383|ref|YP_601482.1| recombination protein F [Streptococcus pyogenes MGAS2096] gi|97180999|sp|Q48QL2|RECF_STRPM RecName: Full=DNA replication and repair protein recF gi|166221869|sp|Q1J973|RECF_STRPB RecName: Full=DNA replication and repair protein recF gi|71803645|gb|AAX72998.1| DNA replication and repair protein recF [Streptococcus pyogenes MGAS6180] gi|94546891|gb|ABF36938.1| DNA replication and repair protein recF [Streptococcus pyogenes MGAS2096] Length = 368 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 F-DHSTVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + + Sbjct: 178 LDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR +L + + S G+ + +++ + +A Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDNLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ TG PILLLD++ + LD ++ L V Q F+T T D L++ + + Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351 Query: 366 RI 367 RI Sbjct: 352 RI 353 >gi|167629174|ref|YP_001679673.1| DNA replication and repair protein recf [Heliobacterium modesticaldum Ice1] gi|226737804|sp|B0TAL0|RECF_HELMI RecName: Full=DNA replication and repair protein recF gi|167591914|gb|ABZ83662.1| DNA replication and repair protein recf [Heliobacterium modesticaldum Ice1] Length = 372 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 96/357 (26%), Positives = 170/357 (47%), Gaps = 14/357 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ + ++ FRNY L++ F IFVG NG GKTN+LE+I+ LS G R A A++ Sbjct: 1 MQIQAIELAHFRNYRGLQVDFMPGVNIFVGANGQGKTNLLESIALLSGGGSHRDARDAEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + + + R++ M G AD + I+L +R + ++N+ +R + +L++ + Sbjct: 61 VQ-----WQEAYYRIKAM-GTADGQPVVIELAFGGERR-KLAKVNNRRLRRIADLSETMN 113 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYF 178 P + G +RRR+LDR + P + + + R++ RN R L EG Sbjct: 114 TVVFSPEDLSLVKGSPAQRRRYLDRELSQASPAYGDVLSRYARVLTQRNSLLRRLREGSA 173 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 ++ + Q+A L V+ R++ + ++ + + + ++ LT Sbjct: 174 TAAELELWDDQLAPLAVETLARRLDGLARIAPYARQIYRGLSRDKEQIELTYRSSFPLPD 233 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 E Y K L + R + + TL GPHR DL + + I +GS G+Q+ + + Sbjct: 234 DRSRWLEAYRKALQERRAEEIARQATLTGPHRDDLQLFLNGRDARI-YGSQGQQRSIALS 292 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + LA I PI+LLD++ + LD D+R L + Q+F+T T F Sbjct: 293 LKLAEIAFIHQIKKEYPIVLLDDVMSELDPDRRQQLLSELESKNIQVFITTTHLHAF 349 >gi|167759581|ref|ZP_02431708.1| hypothetical protein CLOSCI_01938 [Clostridium scindens ATCC 35704] gi|167662808|gb|EDS06938.1| hypothetical protein CLOSCI_01938 [Clostridium scindens ATCC 35704] Length = 363 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 105/365 (28%), Positives = 162/365 (44%), Gaps = 38/365 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI+ L + FRNY L+L FD IF GDN GKTNILEA+ + R A D+ Sbjct: 1 MKIESLKLKNFRNYDLLKLEFDEATNIFYGDNAQGKTNILEAVYLSGTTKSHRGAKDRDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + S G+ D+ +K S + + IN + IR EL + + Sbjct: 61 IKFDQNESHIEAIVERNGINYQIDMHLK-----KNSPKGIAINKMPIRKASELFGIVNLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181 + P I ERRRF+D + +D + + ++ R++ RN LL + F Sbjct: 116 FFSPEDLNIIKNGPSERRRFVDLELSQLDKVYLNDLSNYNRIVNQRNHLLKDMGFGKQQD 175 Query: 182 -------WCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQ--KENFPHIKLSLT 229 W + Q+ + G +I R VE IN + S I + KEN I Sbjct: 176 LMDTLDIW----DLQLIQYGTRIIDRRKKIVEEINKIISSIHGKLTGGKENLQVIYEPSN 231 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 G L L++ A+ L +M S S +GPHR D+ D I +GS Sbjct: 232 GSL---------TLEQALARNLERDLRMKSTS----VGPHRDDICFMAGDLDIR-RYGSQ 277 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ + + L+ L+ P+LLLD++ + LD+ ++N L + DI + I TG Sbjct: 278 GQQRTAALSLKLSEIELVKQAIHDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTG 337 Query: 350 TDKSV 354 D+ V Sbjct: 338 VDEFV 342 >gi|153815426|ref|ZP_01968094.1| hypothetical protein RUMTOR_01661 [Ruminococcus torques ATCC 27756] gi|317500888|ref|ZP_07959100.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 8_1_57FAA] gi|331089210|ref|ZP_08338112.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 3_1_46FAA] gi|145847285|gb|EDK24203.1| hypothetical protein RUMTOR_01661 [Ruminococcus torques ATCC 27756] gi|316897768|gb|EFV19827.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 8_1_57FAA] gi|330405762|gb|EGG85291.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 3_1_46FAA] Length = 362 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 99/353 (28%), Positives = 161/353 (45%), Gaps = 19/353 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L L FD + I GDN GKTNILEA+ + R DV + Sbjct: 3 IKSLKLKNYRNYDLLDLKFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDRDVIQ 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S T ++ D+ +K S + + I+ V IR EL + + Sbjct: 63 FGYDESHIETIIEKRNIDFQIDMHLK-----KNSPKGIAIDKVPIRRAGELFGIVHFVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I RRRF+D + +D + + ++ R++ RN LL + Y + + Sbjct: 118 SPEDLNIIKEGPAGRRRFIDLELSQLDKIYLNNLSNYNRIINQRNSLLKDIYGQRNLIET 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + Q+AE G KI R + I ++ +I + K +++LT ++ S Sbjct: 178 LDIWDMQLAEYGKKILERRKQFIKQVNDIIADIHYKLTGGKERITLT------YESSLGN 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFL 301 + E A L R+ D + T +GPHR D+ D + I GS G+Q+ + + L Sbjct: 232 ITFETA--LSKYRERDLRMKSTTVGPHRDDICF-TTDAGLDIRKFGSQGQQRTAALSLKL 288 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + L+ PILLLD++ + LD+ ++N L + +I + I TG D+ V Sbjct: 289 SEIELVKEELNDTPILLLDDVLSELDKHRQNYLLDSIDNIQTIITCTGLDEFV 341 >gi|309791752|ref|ZP_07686242.1| DNA replication and repair protein RecF [Oscillochloris trichoides DG6] gi|308226245|gb|EFO79983.1| DNA replication and repair protein RecF [Oscillochloris trichoides DG6] Length = 390 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 103/387 (26%), Positives = 180/387 (46%), Gaps = 31/387 (8%) Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR---- 66 ++ +FRNY + L T+F G N GKT++LEA+ +L+ R R S D+ R Sbjct: 5 SLRDFRNYQRIDLQLAPGITLFYGSNASGKTSLLEALFYLATTRSPRSRSDHDLVRWDAQ 64 Query: 67 --IGSPSFFSTFARVEGMEGLADISIKLETRDDR-------SVRCLQINDVVIRVVDELN 117 G F A VE G + + ++ R D + + ++++ R +D L Sbjct: 65 GEAGVLPFARVAAEVERRMGRVRLEVLVQRRADEDGQLTNGAQKLVRVDKRPARALD-LV 123 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 LR+ P + G ERRR++D + +DPR+ R + ++R+++ RN +L Sbjct: 124 GQLRVVLFTPVDLALVDGPPAERRRYIDITLSQLDPRYVRTLAQYQRIVQQRNSMLRAWR 183 Query: 178 FDSSWCSSIEAQMAELGVKINIA-------RVEMINALSSLIME-YVQKENFPHIKLSLT 229 I+ ++A +++ A R+ IN L+ ++ + PH LS+T Sbjct: 184 ERRRPLRGIDDELAYWDQELSQAGGFLLAERLRAINELNQIVGPLFGAISGEPH-PLSIT 242 Query: 230 GFLDGKFDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA-H 286 + D + A L + + +L R+ + +TLIGPHR D+ + I + + Sbjct: 243 YRASIELDAALTAPDLSQRLSAELRRLRQDEVARGQTLIGPHRDDM--SFSVAGIDLGRY 300 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 GS G+Q+ V + + L A L+ +G P+LLLD++ + LD +R L + Q Sbjct: 301 GSRGQQRSVTLALKLGEAELMRQRSGETPVLLLDDMLSELDTQRRTHLIAAIRRPAQQTV 360 Query: 347 MTGTDKSVFDS--LNETAKFMRISNHQ 371 +T TD F + L E ++ MR+ Q Sbjct: 361 LTATDLGDFGATFLAEISR-MRVEGGQ 386 >gi|322412900|gb|EFY03808.1| recombination protein F [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 368 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/362 (25%), Positives = 165/362 (45%), Gaps = 12/362 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 3 IKELELKHYRNYDHLLTSFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 63 FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D+++ + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+A G ++ R+ IN L + Q + LSL+ FD+ + + Sbjct: 178 LDEQLASYGTRVMEHRINFINTLEKEANTHHQAISNGLENLSLSYQSSVVFDKK-TNIYQ 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ +L + D + T +GPHR DL + + S G+ + +++ + +A Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ TG PILLLD++ + LD ++ L V Q F+T T D L++ + + Sbjct: 295 LMKVLTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351 Query: 366 RI 367 RI Sbjct: 352 RI 353 >gi|89892749|ref|YP_516236.1| DNA replication and repair protein recF [Desulfitobacterium hafniense Y51] gi|219666074|ref|YP_002456509.1| DNA replication and repair protein RecF [Desulfitobacterium hafniense DCB-2] gi|122484263|sp|Q252K0|RECF_DESHY RecName: Full=DNA replication and repair protein recF gi|254790474|sp|B8FXW8|RECF_DESHD RecName: Full=DNA replication and repair protein recF gi|89332197|dbj|BAE81792.1| DNA replication and repair protein recF [Desulfitobacterium hafniense Y51] gi|219536334|gb|ACL18073.1| DNA replication and repair protein RecF [Desulfitobacterium hafniense DCB-2] Length = 365 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 94/354 (26%), Positives = 169/354 (47%), Gaps = 21/354 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK+L++ FRNY + F TI G+NG GKTNILE I +L G+ +R ++ Sbjct: 1 MEIKWLHLKSFRNYQDQEVDFRPGLTILQGENGQGKTNILEGIYYLLTGKSYRVHREQEL 60 Query: 65 TRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G F + F + ++LE+ + ++IN + R + E + + Sbjct: 61 ARWGENEFHLYGDFI-------VQRRKLRLESHYQDKRKIIKINQIPCRKLSEYVGTINV 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-S 181 + P + G ERRRFLD + +H + + + ++++ +N LL +G S S Sbjct: 114 VFFSPDDLVMVKGGPAERRRFLDLHIAQHHSKHIQLLNAYNKVLQQKNALLKQGQGGSKS 173 Query: 182 WCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--F 236 + IE Q+ +G +I R E LS E + + +L++ GK Sbjct: 174 QIAQIELWNEQILRIGSEIIRNRWEFTGLLSRKGQEIYGQISSGKEELTMDYHALGKNNL 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +++ A + A+K+ ++ + LIGPHR D++ +++ + +GS G+Q+ ++ Sbjct: 234 EEALAAFPKLLAEKM----SLEMERKMVLIGPHRDDILFKLNERSARL-YGSQGQQRSIV 288 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + LA +I G P+LLLD++ + LD +R+ L + Q MT T Sbjct: 289 LSTKLAELEVIRQEKGDYPLLLLDDVLSELDRFRRDYLLDYTKSL-QQTIMTMT 341 >gi|78185894|ref|YP_373937.1| RecF protein [Chlorobium luteolum DSM 273] gi|123730146|sp|Q3B6Y7|RECF_PELLD RecName: Full=DNA replication and repair protein recF gi|78165796|gb|ABB22894.1| RecF protein [Chlorobium luteolum DSM 273] Length = 369 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 170/363 (46%), Gaps = 25/363 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++K + + FRN+ SL + T+ G NG GKT++LEAI + + + A ++ Sbjct: 1 MRLKNIQVENFRNHHSLAFQPEEGITVLYGPNGSGKTSVLEAIHYCALTKSLLGAPESEC 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 F F G +S+K+ DR + +Q+N ++ + + Sbjct: 61 LAFSEEYFIISGEFVSTRG----TSLSVKVSYGKDRG-KLVQLNQSEVKPFSQHVGTIPC 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 PS I +G ERRRFLD + D R+ ++D+ R+++ RN LL + SS Sbjct: 116 ITFSPSEIAIVNGSPGERRRFLDNALSQSDRRYLDELLDYRRVLQQRNALLLQ--LASSS 173 Query: 183 CSSIE------AQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLD 233 S E +A+L + + R+ + LS + E +Q H+ + F Sbjct: 174 GGSREMLDLWTENLADLAAGVTLRRISFLGELS-VYFEPLQTSLAGKGSHLVTYRSSF-- 230 Query: 234 GKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 G D L++ Y K+ + ++ + + +T+ GPHR DL+ + I +GS G+ Sbjct: 231 GTIDSGLSRDELRDRYIKRFKETQRQELLRTQTMSGPHRDDLLFLSNGREIK-KYGSQGQ 289 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 Q+ L+ + LA R S+ +PI L D++ + LD ++ + +F I+ D G Q +T TD Sbjct: 290 QRAFLISLKLALFRYFSHRLPESPICLFDDMFSELDAERTSEIFNILEDCG-QTILTTTD 348 Query: 352 KSV 354 S+ Sbjct: 349 GSL 351 >gi|326692338|ref|ZP_08229343.1| DNA replication and repair protein RecF [Leuconostoc argentinum KCTC 3773] Length = 375 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/354 (25%), Positives = 167/354 (47%), Gaps = 19/354 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L ++ +RNYA L L F A +F+G+N GKTN+LE+I L+ R R +S D+ Sbjct: 1 MELTSLTLTNYRNYADLTLDFSAGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + S + RV+ +++ T+ ++ ++N + + + L + Sbjct: 61 IRWQANS-ATISGRVKKNVSETPLALHFSTKGKKA----RVNHLEQSKLSQYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180 P + G RRRF+D ++P + + R+++ RN RL + D Sbjct: 116 FAPEDLDLVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKDRNAYLKRLQMKQTTDK 175 Query: 181 SWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + S + AQ+ ++G ++ +AR +E + + I + + + L+ + K D Sbjct: 176 VFLSVLTAQLVDVGAQVFLARRRFLERLQVAAQPIHAEISNQQ-ETLTLAYQTGVAFKRD 234 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVV 295 +K + L + M TL+GPHR D+ IV+ D A+ GS G+Q+ Sbjct: 235 DDLETVKAAFEAALARQEAREIMQGTTLVGPHRDDIKFIVNENDVAV---FGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + + LA L+ TG P+LLLD++ + LD +++ L + D Q F+T Sbjct: 292 ALAVKLAEIDLMQEETGEYPVLLLDDVLSELDANRQTHLLLAIQD-KVQTFITA 344 >gi|331083522|ref|ZP_08332634.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 6_1_63FAA] gi|330404215|gb|EGG83763.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 6_1_63FAA] Length = 361 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 162/353 (45%), Gaps = 26/353 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY SL L FD IF GDN GKTNILEA S + R + ++ + Sbjct: 3 IESIELKNYRNYNSLALEFDKGTNIFYGDNAQGKTNILEAAYLCSTTKSHRGSKDKEMIK 62 Query: 67 I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + F +G+ D+ +K + + I+ + IR EL L I + Sbjct: 63 FDADEAHIRMFVNKDGISRKIDMHLK-----KSKPKGIAIDGIPIRKASELFGLLNIVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + +D + + + ++ RN+LL + F S + Sbjct: 118 SPEDLNIIKNGPGERRRFMDLELCQLDKLYLSNLSSYNHVLNQRNKLLKDIAFQESLKDT 177 Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQS 239 +E Q + G +I R I+ ++ IME + S+TG ++ ++ S Sbjct: 178 LEIWDEQFVQYGKEIIETRRRFIDEING-IMEKIHS--------SITGNREKIELVYEPS 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVG 298 E + ++L R+ D ++T +GPHR D V I I +GS G+Q+ + Sbjct: 229 VS--DENFYQELSKNREKDCRFKQTSVGPHRDDFSVKV--NGIDIRRYGSQGQQRTAALS 284 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + L+ ++ P+LLLD++ + LD +++N L ++ + + I TG D Sbjct: 285 LKLSEIYMVKKVIKDMPVLLLDDVLSELDSNRQNYLLNSISHVQTMITCTGLD 337 >gi|253681218|ref|ZP_04862016.1| DNA replication and repair protein RecF [Clostridium botulinum D str. 1873] gi|253562456|gb|EES91907.1| DNA replication and repair protein RecF [Clostridium botulinum D str. 1873] Length = 360 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/370 (24%), Positives = 176/370 (47%), Gaps = 23/370 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + FRNY +L L F +F+G+N GKTNILE+I + S G+ R ++ + Sbjct: 3 IKNLQLVNFRNYENLVLEFSEGINVFIGNNAQGKTNILESIYYCSIGKSHRTNKDKELIK 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 GS ++ S + ++ DI + E + + +++N + ++ + +L + Sbjct: 63 WGSKNAYVSIYVCKNRLDKKIDIKVFKEGK-----KGIKVNSIKLKTISDLIGTFNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I + RR+FLD + ++ ++ ++ + +++ RN +L + Sbjct: 118 SPEDLKIVKESPLYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNAILRRWNSNKDVTEV 177 Query: 186 IEAQMAELGVKINIARVEMINALS---SLIMEYV--QKENFPHIKLSLTGFLDGKFDQSF 240 + Q+++ G I R++ I +LS I + + QKEN ++ ++F Sbjct: 178 YDQQLSKYGSFIIKERLKYIESLSIKGKRIHDEITSQKENIEFKYITCI--------KNF 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ E+ + L + D T GPHR D I++ + T GS G+Q+ ++ I Sbjct: 230 NNIESEFFEILRKNLEKDFEKGSTSFGPHRDDFIIN-INNTDTRTFGSQGQQRTAILTIK 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359 LA +I TG P+LLLD++ + LD +++ + + Q +TGT ++ D L+ Sbjct: 289 LASLEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIKKF--QTIITGTGILNIKDYLD 346 Query: 360 ETAKFMRISN 369 K ++N Sbjct: 347 NHVKLFEVTN 356 >gi|15612567|ref|NP_240870.1| recombination protein F [Bacillus halodurans C-125] gi|13959499|sp|Q9RC99|RECF_BACHD RecName: Full=DNA replication and repair protein recF gi|5672650|dbj|BAA82688.1| 63%-identity [Bacillus halodurans] gi|10172616|dbj|BAB03723.1| DNA repair and genetic recombination [Bacillus halodurans C-125] Length = 371 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 167/352 (47%), Gaps = 12/352 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + +FRNY L + F+ + +G+N GKTN++EAI FL+ + R A ++ Sbjct: 1 MHIERLTLKQFRNYDELDVSFEPNVNVIIGENAQGKTNVIEAIYFLALAKSHRTARDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +P FAR+EG + + L + +++N + R + + + + Sbjct: 61 IQWEAP-----FARIEGAFQKQNGPLSLHVVLSGKGKKVKVNGLEQRRLSDYIGAVNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRRFLD + + P + ++ +++++ RN LL + + ++ Sbjct: 116 FGPEDLNLVKGSPQIRRRFLDMELGQMSPVYLHQLAMYQKILLQRNHLLKQLFGKANSDP 175 Query: 185 SIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--S 239 ++ Q+ E+ V++ R E I L E Q + KL +T + + Sbjct: 176 MLDVLTDQLIEVAVEVTKKRFEFIQLLQRWAEEIHQAISRGKEKLVITYEPSVHVSEQLN 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L+E + + ++ + TL GPHR DL+ DK + +GS G+Q+ + + Sbjct: 236 LSKLREGFYQAYEQKKERERQRGTTLFGPHRDDLVFFVNDKDVQ-TYGSQGQQRTTALSL 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LA L+ T G PILLLD++ + LD+ +++ L + Q F+T T+ Sbjct: 295 KLAEIELMKETVGDYPILLLDDVLSELDDYRQSHLLHAIQH-RVQTFVTTTN 345 >gi|319940193|ref|ZP_08014546.1| DNA replication and repair protein recF [Streptococcus anginosus 1_2_62CV] gi|319810664|gb|EFW06994.1| DNA replication and repair protein recF [Streptococcus anginosus 1_2_62CV] Length = 365 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 161/372 (43%), Gaps = 30/372 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I FRNY + + F + IF+G N GKTNILEAI FL+ R R S D+ Sbjct: 3 LKNLQIQHFRNYEATEIDFHSGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIY 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + ++ G +I LE R ++N + + + ++ + Sbjct: 63 FSKDTL-----KISGQLVKQTGNISLEIDLTPKGRITKVNHLKQSKLSDYVGNMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L T D ++ + Sbjct: 118 PEDLQLIKGAPALRRKFIDIELGQIKPIYLSDLSHYHHVLKQRNTYLKTAKTMDETFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGKFDQSFCA-- 242 ++ Q+ E G ++ R+E + L E+F K L L+ L+ +C+ Sbjct: 178 LDDQLVEFGCRVMQHRIEFLKKL----------EHFGQQKHLELSSHLEN-LTIKYCSSV 226 Query: 243 -------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 LKE + L R D + T +GPHR D+ D + GS G+ + V Sbjct: 227 PLSDSNKLKESFQIALKQSRSRDLFKKNTGVGPHRDDIAFYIND--MNANFGSQGQHRSV 284 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 ++ + LA L+ T PILLLD++ + LD ++ L ++ Q FMT T Sbjct: 285 VLSLKLAEIELMETVTKEKPILLLDDVMSELDNSRQLNLLETISQ-NIQTFMTTTTLEHL 343 Query: 356 DSLNETAKFMRI 367 S+ K I Sbjct: 344 QSMPSNIKIFSI 355 >gi|229829521|ref|ZP_04455590.1| hypothetical protein GCWU000342_01613 [Shuttleworthia satelles DSM 14600] gi|229791952|gb|EEP28066.1| hypothetical protein GCWU000342_01613 [Shuttleworthia satelles DSM 14600] Length = 365 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 106/376 (28%), Positives = 165/376 (43%), Gaps = 31/376 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + +S +RNY SL + FD I GDN GKTNILE+I R R A ++ R Sbjct: 3 IQSIELSNYRNYRSLEMEFDRGTNILFGDNAQGKTNILESIYLSGTSRSHRTARDRELIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + T R + DI I+ + + IN V ++ +L L I + Sbjct: 63 FGQEEAHIRTNVRKNDLSYCIDIHIR-----QAKSKGIAINGVPVKKASDLFGLLGIIFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I +ERR F++ + ID + + ++ + + RN LL +G D Sbjct: 118 SPEDLNIVKNGPVERRHFINAELSQIDRIYLSDLSNYNKALNQRNSLL-KGILDHPELRE 176 Query: 186 I----EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-----LTGFLDGKF 236 + Q+ G ++ R E I L ++ E H KLS L + Sbjct: 177 TLDVWDGQLVSYGKRLIARRREFIADLIPIVREI-------HRKLSGGIEDLLLAYEPNI 229 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 D +F + +LF R D T +GPHR DL + I GS G+Q+ Sbjct: 230 DDTF------FEDELFRARDRDMRMGTTTVGPHRDDLKLSIASVDIR-RFGSQGQQRTCA 282 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA +++ G PILLLD++ + LD +++N L + DI + I TG D+ V + Sbjct: 283 LSLKLAEIQMMEAKRGEKPILLLDDVLSELDSNRQNYLLESINDIQTIISCTGLDEFVKN 342 Query: 357 SLNETAKFMRISNHQA 372 + + ISN QA Sbjct: 343 KFS-VHRVYEISNGQA 357 >gi|325265439|ref|ZP_08132162.1| DNA replication and repair protein RecF [Clostridium sp. D5] gi|324029297|gb|EGB90589.1| DNA replication and repair protein RecF [Clostridium sp. D5] Length = 361 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 161/358 (44%), Gaps = 30/358 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L L FD + I GDN GKTN+LEA+ + R D+ + Sbjct: 3 IKSLKLKNYRNYELLDLTFDPKTNILYGDNAQGKTNVLEALYLSGTTKSHRGTKDRDLIQ 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + T G+E D+ +K S + + IN + IR EL + + Sbjct: 63 FERDEAHLETIVEKRGIEYQIDMHLK-----KNSPKGIAINKIPIRKASELFGIIHFVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I RRRF+D + +D + + ++ R++ RN LL + Y + + Sbjct: 118 SPEDLNIIKDGPSGRRRFIDLELSQLDKVYLSNLSNYNRIINQRNSLLKDIYKQENLRET 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQS 239 + + Q+ E G K+ +R I ++ +I +I LTG + ++ S Sbjct: 178 LDIWDMQLVEYGTKVMESRKRFIEDVNEII---------SNIHYKLTGGKENITLSYECS 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI---AHGSTGEQKVVL 296 L E A K R+ D + T +GPHR DL C A ++ GS G+Q+ Sbjct: 229 VGNLTLEQALK--KNRERDMRLKSTSVGPHRDDL----CFMAGSLDIRKFGSQGQQRTAA 282 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + L+ L+ + P+LLLD++ + LD+ ++N L + DI + I TG D+ V Sbjct: 283 LSLKLSEIELVRSLIRDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTVITCTGLDEFV 340 >gi|224477953|ref|YP_002635559.1| recombination protein F [Staphylococcus carnosus subsp. carnosus TM300] gi|254790488|sp|B9DPX1|RECF_STACT RecName: Full=DNA replication and repair protein recF gi|222422560|emb|CAL29374.1| DNA repair and genetic recombination protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 370 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 101/381 (26%), Positives = 168/381 (44%), Gaps = 34/381 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNALQLENYRNYEEVVLDCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG + L + + +++N + + + HL + Sbjct: 61 IR-----FNAEYAKIEGELSYRHGKMPLTMFITKKGKKVKVNHLEQHRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQVRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQMKQKTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q AE +KI + RV IN L +L E + E P +KLS Sbjct: 176 TMLEVLNQQFAEYALKITLKRVHFINELETLAKPIHSSITDERETLDLEYRPSLKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGS 288 + L EE K L D + + L GPHR DL V+ D +GS Sbjct: 233 -----EETDEAKLYEEVQKLLQDNMEREIERGVALYGPHRDDLGFKVNEMDAQ---TYGS 284 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+Q+ + I LA LI+ G PILLLD++ + LD+ ++ L + D Q F+T Sbjct: 285 QGQQRTTALSIKLAEIELINIEVGEYPILLLDDVLSELDDSRQTHLLSTIQD-KVQTFVT 343 Query: 349 GTDKSVFD-SLNETAKFMRIS 368 T D + + AK RI+ Sbjct: 344 TTSVEGIDHEIMKHAKLYRIN 364 >gi|262277740|ref|ZP_06055533.1| putative DNA replication and repair protein RecF [alpha proteobacterium HIMB114] gi|262224843|gb|EEY75302.1| putative DNA replication and repair protein RecF [alpha proteobacterium HIMB114] Length = 363 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 98/367 (26%), Positives = 181/367 (49%), Gaps = 20/367 (5%) Query: 10 LNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 +NI F+++ +L + D QH I GDNGVGKTN++E++SF S +G R + + Sbjct: 7 INIKNFKSHKQYNLEISKDYQHIIIYGDNGVGKTNLIESLSFFSNSKGLRGDTLDKLLPE 66 Query: 68 GSPSFFSTF--ARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRI 122 + T A++ + S K+ T+D +++ L+ + + + E+ L Sbjct: 67 QETNIIDTNIQAKILSNSNQFNFSFKI-TKDQENLKKTFFLEEKKISLPKIKEI---LSF 122 Query: 123 SWLVPSMDRI-FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 WL P MD+I + G S+ +R F+D+++ + + +++ + R ++L D Sbjct: 123 IWLSPYMDKIMYEGQSI-KRDFIDKLISQNEKNFNLSVSSYKKNIAERLQILKNTK-DEK 180 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 W IE ++AE +I + R N ++ +I + ++ NF I + L ++ Sbjct: 181 WLDIIEKRLAENIYEIFLMRRNYANKINKIISDKLK--NFREINIKYNNDLFEDLNEKKI 238 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + E + +KL R++D +++RT G ++ + K STGEQK L+ I L Sbjct: 239 KI-EIFFEKLKSNRELDEITKRTNFGINKDQIFFFDKIKNRNTDACSTGEQKSSLLTIIL 297 Query: 302 AHA-RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 A+ +L F ILLLDE ++H+D+ L + G+QI+ TGT K++F ++ Sbjct: 298 ANCWKLKIEKKDF--ILLLDEATSHIDDQNFGRLVTEIEKFGTQIWYTGTSKNLFQAIEN 355 Query: 361 TAKFMRI 367 F+ + Sbjct: 356 KGFFIHL 362 >gi|116512900|ref|YP_811807.1| recombination protein F [Lactococcus lactis subsp. cremoris SK11] gi|123025165|sp|Q02WH8|RECF_LACLS RecName: Full=DNA replication and repair protein recF gi|116108554|gb|ABJ73694.1| DNA replication and repair protein RecF [Lactococcus lactis subsp. cremoris SK11] Length = 359 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 96/333 (28%), Positives = 156/333 (46%), Gaps = 25/333 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K + + FRNY L+L F IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MKLKQIELKNFRNYEDLKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +V G+ A ++ LE + R + N + + + L+I Sbjct: 61 I-----CWSGQEMKVSGLVEKAHATVPLEVQLSSKGRIAKANHLKENRLADYIGQLKILM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RRRF+D + I + + + R ++ RN L + D ++ Sbjct: 116 FAPENLELVKGSPATRRRFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDQAKIDKNF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQS 239 + ++ Q+AE G KI R I L + +K I LT L+ ++Q+ Sbjct: 176 LTVLDEQLAEHGNKIMFERKTFIEKLEI----HAKK-----IHEQLTHGLETLKITYNQN 226 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVG 298 +K +++K+L + D +T +GPHR DL + I +A GS G+Q+ V + Sbjct: 227 ---VKTDFSKELLSRQDHDIFRHQTTVGPHRDDL--QFFINEINVADFGSQGQQRTVALS 281 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 I LA LI TG PILLLD++ + LD ++ Sbjct: 282 IKLAEIDLIFEETGEYPILLLDDVMSELDNHRQ 314 >gi|313885421|ref|ZP_07819171.1| DNA replication and repair protein RecF [Eremococcus coleocola ACS-139-V-Col8] gi|312619151|gb|EFR30590.1| DNA replication and repair protein RecF [Eremococcus coleocola ACS-139-V-Col8] Length = 327 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 91/335 (27%), Positives = 150/335 (44%), Gaps = 16/335 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K +++S +RNY++L+L + TI VG+N GKTN+LEAI LS + R ++ Sbjct: 1 MKLKSIHLSHYRNYSNLQLELNDGLTILVGNNAQGKTNLLEAIFLLSVTKSHRTNHDQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G FA VEG + S L + + + N + + L + Sbjct: 61 IQWG-----QDFALVEGQVQTENYSYPLSLQISSKGKQAKFNYIDQAKLSSFIGKLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P +I G RR+F+D + P + + ++ + RL++ RNR L + FD Sbjct: 116 FAPEDLQIIKGAPGLRRKFIDTELGQSHPVYLQELLTYHRLLKQRNRYLKDYGRSTKFDD 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--- 237 + + Q E VK+ R + + L+ L E +E K LT D Sbjct: 176 LYFEVLSQQFIEQAVKVIGYRTKFVQDLARLAQEI--QEELSGQKDQLTISYDASHSRLN 233 Query: 238 -QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 Q L + + ++ + TL GPHR DL Y D GS G+Q+ ++ Sbjct: 234 YQEIDQLAQAFTDLFAANQQREKDQGVTLYGPHRDDLSF-YLDGKPAQFFGSQGQQRTIV 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 + + LA LI G P+LLLD++ + LD ++ Sbjct: 293 LSLKLAEIELIKELKGHYPVLLLDDVLSELDAHRQ 327 >gi|297200943|ref|ZP_06918340.1| recombination protein F [Streptomyces sviceus ATCC 29083] gi|197716886|gb|EDY60920.1| recombination protein F [Streptomyces sviceus ATCC 29083] Length = 373 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 102/358 (28%), Positives = 162/358 (45%), Gaps = 21/358 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EAI +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAIGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE ++ R +R D L +R Sbjct: 61 VRMGA---DRAIVRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLTGFL 232 D S + +A +G ++ R+++I AL L E + P I L Sbjct: 177 RSMDLSTLDVWDQHLARVGAELLAQRLDLIAALQPLTDKAYEQLAPGGGP-IALEYKPSA 235 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 G+ + AL E+ L + RK + TL+GPHR DL + + + S GE Sbjct: 236 PGEA-HTREALHEQLMAALAEARKQEIERGVTLVGPHRDDLNLK-LGQLPAKGYASHGES 293 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 294 WSYALALRLASYDLL-RAEGNEPVLILDDVFAELDTRRRERLAELVAP-GEQVLVTAA 349 >gi|254784276|ref|YP_003071704.1| DNA replication and repair protein RecF [Teredinibacter turnerae T7901] gi|259563674|sp|C5BKM1|RECF_TERTT RecName: Full=DNA replication and repair protein recF gi|237686556|gb|ACR13820.1| DNA replication and repair protein RecF [Teredinibacter turnerae T7901] Length = 378 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 161/346 (46%), Gaps = 18/346 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+ISEFRN S L + G+NG GKT+ILE+IS L+ GR FR + + Sbjct: 7 LDISEFRNLRSATLQPGEGINLISGENGSGKTSILESISVLAHGRSFRTHKFRRLINNDE 66 Query: 70 PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 SF + F ++ EG +I + + D +R I+ EL + L + + + Sbjct: 67 KSF-TLFGQI--FEGTTRNIGLSRASNGDIQIR---IDSKAAHTATELAECLPLLVMNSA 120 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 ++ G RR+F D +VF + + + R ++ RN LL S + Sbjct: 121 SFQLLEGSGQVRRKFFDWLVFHVKQEFKHYWKLYARCIKQRNSLLRRDKITRSELLPWDQ 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTGFLDGKFDQSFCALKE 245 ++ + I R E+ + + + + +F +LS T ++ G + Sbjct: 181 ELTKAAQHIESMRSEVFELFQTHFLNEIGQFDFTETLGAELSCT-YVSG------WSKTG 233 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 Y ++L D + D + T IG H+SD+ ++ + + S G+QK V+V +FLA A Sbjct: 234 NYNEQLEDQFERDVAAGYTHIGSHKSDVKINLA-RVPAVEELSRGQQKSVIVALFLAEAL 292 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + TTG P+ LLD++ A LDE + + + ++GSQ+F T D Sbjct: 293 VFRTTTGRTPVFLLDDLPAELDEKNLRIVGKALKNLGSQVFATAID 338 >gi|323705851|ref|ZP_08117423.1| DNA replication and repair protein RecF [Thermoanaerobacterium xylanolyticum LX-11] gi|323534847|gb|EGB24626.1| DNA replication and repair protein RecF [Thermoanaerobacterium xylanolyticum LX-11] Length = 362 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 91/350 (26%), Positives = 163/350 (46%), Gaps = 13/350 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + F+N +++F A + G N GK+N+LE I LS G+ FR + D+ Sbjct: 3 LKELIVDNFKNLKHQKVIFSAGTNVIYGSNAQGKSNLLECIRLLSIGKSFRNSKNRDMVC 62 Query: 67 IGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 ++ V+G E + KL R ++N+ I+ + EL + + Sbjct: 63 FDVDYYYIKGVFDVDGEEVTVETGYKLNQN-----RFFKVNNNKIKNISELIGVILTTIF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSSW 182 P I G RRR++D + I + +I + +++ RN++L + F + Sbjct: 118 SPDDLNIVKGSPSLRRRYMDASISMIKRNYLYDIIQYNKVLANRNKVLKDVKFKKESARL 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ Q++ G KI + R + IN L ++ + VQ + + L + K D + Sbjct: 178 LDIMDEQLSFFGSKIIMYRRQYINNLDLIVKKIVQDISCEKVDLIYWNNVTDKID-DIKS 236 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +K+ KL R +D T GPHR D+ + + + + S G+Q+ + + + LA Sbjct: 237 IKDLLLNKLILNRDVDIKYGDTKYGPHRDDVKI-FINGHDSRIFASQGQQRTIALCLKLA 295 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +I + G PILLLD++ + LDE++R + V G Q F+T T+K Sbjct: 296 EYEVIRSENGENPILLLDDVMSELDENRRKYILNKVE--GCQTFITHTEK 343 >gi|94502203|ref|ZP_01308698.1| recombination protein F [Oceanobacter sp. RED65] gi|94425664|gb|EAT10677.1| recombination protein F [Oceanobacter sp. RED65] Length = 357 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 162/349 (46%), Gaps = 17/349 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + RN + + + G+NG GKT+ LEAI +L+ + FR ++ Sbjct: 1 MAIELLMLQGVRNLSPTNVSPSPLVNLIYGENGSGKTSFLEAIYYLAYCKSFRTHKQKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + + G L + +E R+ R +++N V + EL L I Sbjct: 61 IQHGQNT-------MTGFCQLPHKQLGVE-RNQEGQRRIKLNGVCLNSAAELASVLPIQL 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P+M R+ G RR ++D VF ++P+ F+R + RN LL G S Sbjct: 113 LDPTMFRLLEGSPQLRREYIDWGVFHVEPQFFGIWKQFKRAHQTRNALLRAGGASESERK 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +++L +I R+ + L L Y+ + N + ++++ + K DQ + L Sbjct: 173 IWHSSLSDLANQITSMRIAYLERLKPLFDHYMARLN-DGLGVTMSFYQGWKKDQDYYELL 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E K D S T GP R+DL + + + S G+QK+V+ + LA A Sbjct: 232 E-------SSWKSDIESGYTKSGPQRADLRIK-AENVPAMDVLSRGQQKMVVCALKLAQA 283 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 L +G I L+D+++A LD + R AL R++ ++ Q+F+T + + Sbjct: 284 DLYKQVSGSPCIFLVDDLAAELDINHRKALCRLLEELKCQVFVTAVEST 332 >gi|306826174|ref|ZP_07459509.1| recombination protein F [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431650|gb|EFM34631.1| recombination protein F [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 363 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/372 (25%), Positives = 167/372 (44%), Gaps = 22/372 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 3 LQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLLQKKTGSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+ E G ++ R++ I L ++ QK+ H+++S F QS + Sbjct: 178 LDDQLVEYGCRVIKHRIKFIKDLE----KFGQKK---HLEISNQSEELSIFYQSSVNFTD 230 Query: 246 E------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 E + L R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 231 EEQLTNSFKMALDKSRSRDLFKKNTGVGPHRDD--ITFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISNHQ 371 E I N Q Sbjct: 348 ENLSIFNIQNGQ 359 >gi|291526543|emb|CBK92130.1| recF protein [Eubacterium rectale DSM 17629] gi|291529186|emb|CBK94772.1| recF protein [Eubacterium rectale M104/1] Length = 362 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 18/352 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + +S FRNY L + FD++ I GDN GKTNILEA + + + ++ R Sbjct: 3 IKSIQLSNFRNYEKLDISFDSETNIIYGDNAQGKTNILEAAYLSGTTKSHKGSKDKEMIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + T E D+ ++ + + IN + I+ EL L I + Sbjct: 63 FGEDEAHIRTIVEKNDKEYRIDMHLR-----KNGAKGVAINKMPIKKASELFGILNIVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + +D + + + + + RNRLL + + + Sbjct: 118 SPEDLNIIKNGPAERRRFIDLELCQLDKIYLSNLSKYNKTLVQRNRLLKDIAYRPDLIDT 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ Q+ E G + R E +N L+ +I + + KL L + D F Sbjct: 178 LQVWDMQLLEYGRHVIKKRREFVNELNEIIQDIHSNISGGREKLILK--YEPSIDDIF-- 233 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + +L R D +T +GPHR D++ D +GS G+Q+ + + L+ Sbjct: 234 ----FEDELLKARSRDLKLCQTTVGPHRDDMLFS-VDGVDIRKYGSQGQQRTSALSLKLS 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 L+ P+LLLD++ + LD +++N L ++D + I TG D+ V Sbjct: 289 EISLVKKNINSTPVLLLDDVLSELDGNRQNYLLNSLSDTQTIITCTGLDEFV 340 >gi|314935204|ref|ZP_07842557.1| DNA replication and repair protein RecF [Staphylococcus hominis subsp. hominis C80] gi|313656539|gb|EFS20278.1| DNA replication and repair protein RecF [Staphylococcus hominis subsp. hominis C80] Length = 371 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 29/379 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY ++ L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYVLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNSEYAKIEGELSYRHGTMPLTMYITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKTDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q A+ + + + R + I L +L E + P IKLS T Sbjct: 176 TMLEVLNQQFAQYALNVTLRREQFIEELEALAQPIHAGITNQRETLSLTYLPSIKLSDTS 235 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + L EY + R+MD L GPHR DL + D +GS G Sbjct: 236 KNKSELLDEVITLLNEYQQ-----REMDRAV--CLYGPHRDDLGFNVNDMDAQ-TYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346 Query: 351 DKSVFD-SLNETAKFMRIS 368 D + AK RI+ Sbjct: 347 SVDGIDHEIMNNAKLYRIN 365 >gi|260584260|ref|ZP_05852007.1| DNA replication and repair protein RecF [Granulicatella elegans ATCC 700633] gi|260157778|gb|EEW92847.1| DNA replication and repair protein RecF [Granulicatella elegans ATCC 700633] Length = 369 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 165/350 (47%), Gaps = 19/350 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L ++ FRNY L L F IF+G+N GKTN++E+I L+ + R ++ Sbjct: 6 LQLNHFRNYEELFLEFGKGVHIFIGENAQGKTNLMESIYTLAMTKSHRTNQDRELIMWNE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + A ++G +I LE R + ++N + + + L + P Sbjct: 66 DT-----ATIKGKVEKKISNIPLEIRFSNKGKIGRVNHLEQKKLSSYLGQLNVILFAPEN 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS----WCSS 185 + G RR+F+D + ++P + +++++RL++ RN L + S + Sbjct: 121 LELVKGAPANRRKFMDMELGQMNPIYLHELVEYQRLIKQRNHYLKQLAIKKSSADLYLEV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSL---IMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E I R+E + L +L I E + +E F +K + ++ Q Sbjct: 181 LTEQVIEKATAILNHRLEFMEQLEALARPIHEQISLGREEFS-LKYQTSLSIEKGMSQD- 238 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +KE Y K+ +K + TL+GPHR DLI DK + GS G+Q+ ++ + Sbjct: 239 -EVKELYQKQFEAVQKRELEQASTLVGPHRDDLIFYLNDKPVQ-NFGSQGQQRSTVLSLK 296 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LA L++ TG PILLLD++ + LD+D++ L + + + Q F+T T Sbjct: 297 LAEIELMNIATGEYPILLLDDVLSELDDDRQTHLIKAIEN-KVQTFITTT 345 >gi|255535750|ref|YP_003096121.1| DNA recombination and repair protein RecF [Flavobacteriaceae bacterium 3519-10] gi|255341946|gb|ACU08059.1| DNA recombination and repair protein RecF [Flavobacteriaceae bacterium 3519-10] Length = 359 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 107/374 (28%), Positives = 174/374 (46%), Gaps = 30/374 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + +F+N++ L F Q FVG+NGVGKTN+L+A+ +LS G+ F D+ Sbjct: 3 IQKLQLIQFKNHSQQTLEFSPQINCFVGNNGVGKTNVLDALHYLSVGKSF--LGNTDLNN 60 Query: 67 IGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH---LRI 122 I + FF+ ++ E I I++ RD + + ++ ND + D + H L Sbjct: 61 IQTDGDFFAIEGKIYDGEKENIIKIQM-PRDAK--KLIKKND---KSYDRMADHIGFLPS 114 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYF 178 + P + S RR+FLD M+ D + +I +++ ++ RN LL YF Sbjct: 115 VIISPYDSNLISDSGESRRKFLDAMISQTDSDYLYNLIQYQKTIQQRNALLKSFAKNRYF 174 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D + G I I R E ++++ LI Y + + ++++ D K Sbjct: 175 DPENLEIYNEPLIRFGTAIFIKRTEFLDSILPLIQSYYSIISNGNEQVTVDYHSDLK-TS 233 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 SF L E K D + T G H+ DL+ + ++ GS G+QK L+ Sbjct: 234 SFEELLNENLDK-------DRVLTYTSKGIHKDDLVFEMNGNSLK-RTGSQGQQKSFLIA 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK----S 353 + L+ I TG P+LLLD+I LD+ + L +V + QIF+T T+K S Sbjct: 286 LKLSQMNRIKELTGKTPVLLLDDIFDKLDDSRVLQLIELVNREHFGQIFITDTNKERTES 345 Query: 354 VFDSLNETAKFMRI 367 V +NE +K I Sbjct: 346 VVRKINEESKIFEI 359 >gi|331267332|ref|YP_004326962.1| recombination protein F [Streptococcus oralis Uo5] gi|326684004|emb|CBZ01622.1| recombination protein F [Streptococcus oralis Uo5] Length = 365 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 169/370 (45%), Gaps = 22/370 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 3 LQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + R+ G+ SI LE R ++N + + + H+ + Sbjct: 63 FDNEQL-----RLSGLLQKKTSSIPLEIDLTPKGRVTKVNYLKQARLSDYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALK 244 ++ Q+ E G ++ R++ I L ++ QK+ H+++S L + S Sbjct: 178 LDDQLVEYGCRVIRHRIKFIKDLE----KFGQKK---HLEISNKLEELSISYQSSVNFTD 230 Query: 245 EE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 EE + L R D + T +GPHR D + + AI + GS G+ + +++ + Sbjct: 231 EEQLTSSFKMALEKSRSRDLFKKNTGVGPHRDD--ITFYINAIDASFGSQGQHRSLVLSV 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISN 369 E I N Sbjct: 348 ENLSIFNIQN 357 >gi|259047901|ref|ZP_05738302.1| DNA replication and repair protein RecF [Granulicatella adiacens ATCC 49175] gi|259035578|gb|EEW36833.1| DNA replication and repair protein RecF [Granulicatella adiacens ATCC 49175] Length = 375 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/352 (24%), Positives = 167/352 (47%), Gaps = 13/352 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + FRNY S++L F +F+G+N GKTN++E+I L+ + R + D Sbjct: 1 MKLTNLQLQNFRNYESVQLEFTDGVHVFIGENAQGKTNLMESIYALAMTKSHRTTN--DK 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + FA ++G LE + + + ++N + + + +L + Sbjct: 59 ELIG---WKKDFATIKGTIEKTATKTNLELQFSKKGKIAKVNYLEQKRLSSYLGNLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G RR+F+D + + + ++++ R+++ RN L + Sbjct: 116 FAPENLTLVKGSPQNRRKFVDMELGQMSSLYLYDLVEYNRVLKQRNTYLKQLAIKKKQPD 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + ++EL KI R++ + L +L + + + K S++ + Sbjct: 176 EYLEVLSEMLSELASKIVFHRLDFMKQLEALAIPIHDQLSLGREKFSVSYQATIPLEDGL 235 Query: 241 CA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 A +KE Y + + ++ TLIGPHR DLI Y ++ +GS G+Q+ ++ Sbjct: 236 TASQMKEIYMNQFKKNQTREADQATTLIGPHRDDLIF-YLNEVPVQTYGSQGQQRSTVLS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + LA L+ +TG P+LLLD++ + LD+D++ L + + + Q F+T T Sbjct: 295 LKLAEIELMKLSTGEYPLLLLDDVLSELDDDRQTHLIKAIEN-KVQTFITTT 345 >gi|225869472|ref|YP_002745420.1| DNA replication and repair protein RecF [Streptococcus equi subsp. zooepidemicus] gi|259563673|sp|C0MGR5|RECF_STRS7 RecName: Full=DNA replication and repair protein recF gi|225702748|emb|CAX00903.1| DNA replication and repair protein RecF [Streptococcus equi subsp. zooepidemicus] Length = 369 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 90/347 (25%), Positives = 157/347 (45%), Gaps = 13/347 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK LN++ +RNY F +F+GDN GKTN LEAI FLS R R S D+ Sbjct: 3 IKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDLIY 62 Query: 67 IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S T R+ G ++LE R +IN + + + + + Sbjct: 63 FDERDCSISGTLERLSG-------RVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L + DS + Sbjct: 116 FAPEDLQLVKGSPSLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDSDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ G ++ R+ + +L+ ++ Q + KLS++ F+ + Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEASKHHQAISNGLEKLSISYQASVSFEHQ-QEI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + + T +GPHR DL+ D A S G+ + +++ + +A Sbjct: 235 YQQFMDQLKATHQRDFLRKNTGVGPHRDDLVFYINDMNANFA--SQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 L+ TG PILLLD++ + LD ++ L V Q F+T T Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNIRQTKLLEAVKKENVQTFITTT 339 >gi|295694691|ref|YP_003587929.1| DNA replication and repair protein RecF [Bacillus tusciae DSM 2912] gi|295410293|gb|ADG04785.1| DNA replication and repair protein RecF [Bacillus tusciae DSM 2912] Length = 370 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 97/365 (26%), Positives = 169/365 (46%), Gaps = 25/365 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + FRNY L+L A +F+G+NG GKTN+LEAI L+ + R A+ Sbjct: 1 MRLESLRLLHFRNYPHLQLDTRAPVNVFIGENGQGKTNVLEAIDILALTKSHRTHRLAEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G F RV+ G +++S+ L T R+ + + + + + L + Sbjct: 61 IQWGE-QFALIEGRVQRNTGSSELSVTLTTSGKRAA----VAGIERQRISDYVGMLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P ++ G RRRFLD + I P + R + + R + RN+LL + + Sbjct: 116 FTPEDLQLIKGSPQVRRRFLDMEIGQISPLYLRDLQQYVRALSQRNQLLKSANHNPTERI 175 Query: 182 ------WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 W + Q+A G +I + R + + L E + + LSL+ + Sbjct: 176 TDTLDIW----DDQLARHGSRIILRRAQFVRTLERHAREIHSRVSGDREVLSLS-YAKVS 230 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 +Q+ + + Y +L R +D T +GPHR DL++ D+ A S G+Q+ Sbjct: 231 PEQTPEQVFQMYLHELRARRSLDLARGVTSVGPHRDDLVILLNDRE-AAAFASQGQQRTA 289 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI--FMTGTDKS 353 + + LA LI G P+LLLD++ + LD ++ +V+ +G+Q+ F+T T Sbjct: 290 ALSLKLAEIELIREEVGEYPVLLLDDVLSELDPVRQ---VHLVSAMGAQVQTFLTTTHLE 346 Query: 354 VFDSL 358 SL Sbjct: 347 GLGSL 351 >gi|332971207|gb|EGK10170.1| recombination protein F [Desmospora sp. 8437] Length = 372 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 105/377 (27%), Positives = 162/377 (42%), Gaps = 24/377 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FRN L+L + +FVG N GKTNILE++ L+ G+ R S+ ++ R Sbjct: 3 VERLELKQFRNIEHLKLDCSGELHMFVGPNAQGKTNILESLYVLAIGKSHRTRSHRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 A V G E + I+L R R +R N V R + E L Sbjct: 63 WEQTGALLK-AEVSGKESARRLEIRLTPRGKRVLR----NGVEQRRLSEYIGSLTAVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS- 185 P I G RRRFLD + + P + + + +L++ RN LL E W Sbjct: 118 PEDLSIVKGSPQVRRRFLDMEIGQVSPAYIYHLTRYNQLLQQRNSLLKE--LGKGWGKQT 175 Query: 186 -----IEAQMAELGVKINIARVEMINALSSLIME----YVQKENFPHIKLSLTGFLDGKF 236 + Q+ L + R +N LS E Q ++ ++ Sbjct: 176 ALLDVLNEQLVGLSTHLWSKRFSFVNILSRWAQEIHHSITQGSESLTLQYRPLAAVEPGM 235 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 D+S +++E ++L R+ + TLIGPHR DL + + GS G+Q+ Sbjct: 236 DRS--SMEEALTRELMQVREQEIQRGTTLIGPHRDDLRI-AANGTDLHTFGSQGQQRTAA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA LI TG PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIHQETGTYPILLLDDVLSELDDGRKTHLLEAIRG-RVQTFVTTTGLEGID 351 Query: 357 SLNETAKFMRISN-HQA 372 ET + RI HQ Sbjct: 352 --RETLERARIRRVHQG 366 >gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF [Eubacterium rectale ATCC 33656] gi|259563365|sp|C4Z940|RECF_EUBR3 RecName: Full=DNA replication and repair protein recF gi|238874108|gb|ACR73815.1| DNA replication and repair protein RecF [Eubacterium rectale ATCC 33656] Length = 362 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 155/352 (44%), Gaps = 18/352 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + +S FRNY L + FD + I GDN GKTNILEA + + + ++ R Sbjct: 3 IKSIQLSNFRNYEKLDISFDTETNIIYGDNAQGKTNILEAAYLSGTTKSHKGSKDKEMIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + T E D+ ++ + + IN + I+ EL L I + Sbjct: 63 FGEDEAHIRTIVEKNDKEYRIDMHLR-----KNGAKGVAINKMPIKKASELFGILNIVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + +D + + + + + RNRLL + + + Sbjct: 118 SPEDLNIIKNGPAERRRFIDLELCQLDKIYLSNLSKYNKTLVQRNRLLKDIAYRPDLIDT 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ Q+ E G + R E +N L+ +I + + KL L + D F Sbjct: 178 LQVWDMQLLEYGRHVIKKRREFVNELNEIIQDIHSNISGGREKLILK--YEPSIDDIF-- 233 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + +L R D +T +GPHR D++ D +GS G+Q+ + + L+ Sbjct: 234 ----FEDELLKARSRDLKLCQTTVGPHRDDMLFS-VDGVDIRKYGSQGQQRTSALSLKLS 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 L+ P+LLLD++ + LD +++N L ++D + I TG D+ V Sbjct: 289 EISLVKKNINSTPVLLLDDVLSELDGNRQNYLLNSLSDTQTIITCTGLDEFV 340 >gi|73661313|ref|YP_300094.1| recombination protein F [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82581562|sp|Q4A177|RECF_STAS1 RecName: Full=DNA replication and repair protein recF gi|72493828|dbj|BAE17149.1| DNA repair and genetic recombination protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 371 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 168/379 (44%), Gaps = 29/379 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY S+ L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLKTLQLQNYRNYESISLNCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F S +A++EG + L + + ++IN + + + HL + Sbjct: 61 IR-----FDSDYAKIEGDLSYRYGEMPLTMYITKKGKQVKINHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + + DS Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQYGQKTDS 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q AE +KI + R IN L SL E + P IKL Sbjct: 176 TMLEVLNQQFAEYALKITLRREHFINELESLAKPIHSGITNERETLSLNYLPSIKLE--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D+S EE L D + + L GPHR DL + + +GS G Sbjct: 233 ----NKDKSETERLEEVLTILNDNMEREKDRGVCLYGPHRDDLGFN-VNGMDAQTYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ +++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQSHLLSTIQH-KVQTFVTTT 346 Query: 351 D-KSVFDSLNETAKFMRIS 368 + + + AK RI+ Sbjct: 347 SVDGIEHEIMKNAKLYRIN 365 >gi|225028835|ref|ZP_03718027.1| hypothetical protein EUBHAL_03122 [Eubacterium hallii DSM 3353] gi|224953831|gb|EEG35040.1| hypothetical protein EUBHAL_03122 [Eubacterium hallii DSM 3353] Length = 366 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 96/351 (27%), Positives = 160/351 (45%), Gaps = 22/351 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + ++ +RN+ SL++ F IF GDN GKTN+LE+I R R + D+ R Sbjct: 3 VESIELNNYRNFDSLKVEFSPGVNIFFGDNAQGKTNLLESIYVSGTLRSHRGSRDKDLIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + F R + + D+ +K + + +N V +R EL + I + Sbjct: 63 FGEDEAHIRLFFRKDSLSHRLDVHLK-----KNKSKGVAVNGVPVRRSGELLGMMHIVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I RRRFLD + ID + ++++ + +++ RN LL + + + Sbjct: 118 SPEDLSIIKEGPAGRRRFLDMELSQIDKGYMQQLVAYSKILNERNNLLKQINLYPALIDT 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFC 241 ++ Q+ G + R E + Y E I LTG + K + Sbjct: 178 LDGWDEQLLAAGQFLIKKREEFV---------YFLDEMMAKIHGQLTGGKEQIKVEYEKN 228 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIF 300 E++ ++L+ R D S T +GPHR DL + I I GS G+Q+ + + Sbjct: 229 VEAEKFREQLYSKRNKDISSGTTSVGPHRDDL--RFKVGGIDIRKFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 L+ RLI TG PILLLD++ + LD +++ L + DI + I TG D Sbjct: 287 LSEIRLIEQVTGEKPILLLDDVLSELDAGRQSWLLESIQDIQTLISCTGLD 337 >gi|312866766|ref|ZP_07726979.1| DNA replication and repair protein RecF [Streptococcus parasanguinis F0405] gi|311097549|gb|EFQ55780.1| DNA replication and repair protein RecF [Streptococcus parasanguinis F0405] Length = 364 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 166/367 (45%), Gaps = 13/367 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+I FRNY L + F IF+G N GKTNILE+I FL+ R R + D+ Sbjct: 3 LKQLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDLIY 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S F +V G + LE R ++N + + H+ + Sbjct: 63 FESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + + P + + + +++ RN L D+++ Sbjct: 118 PEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFLEV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +++Q+A G ++ R+E I L + E + + LS+ + F + ++E Sbjct: 178 LDSQLASFGSRVIHHRLEFIKKLEAKAEEKHTRLSDNKEDLSIQ-YQSTVFSEEGNDIEE 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ L R+ D + T IGPHR DL + + GS G+ + V++ + LA Sbjct: 237 QFLSMLEKNRQKDIFRKTTSIGPHRDDLA--FFINNMNATFGSQGQHRSVVLSLKLAEIE 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ T PILLLD++ + LD ++ L +++ Q F+T T D L + + + Sbjct: 295 LMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTT---TLDHLKDLPEEL 350 Query: 366 RISNHQA 372 +I QA Sbjct: 351 KIFTVQA 357 >gi|260588814|ref|ZP_05854727.1| RecF protein [Blautia hansenii DSM 20583] gi|260540593|gb|EEX21162.1| RecF protein [Blautia hansenii DSM 20583] Length = 361 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 161/352 (45%), Gaps = 24/352 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY SL L FD IF GDN GKTNILEA S + R + ++ + Sbjct: 3 IESIELKNYRNYNSLALEFDKGTNIFYGDNAQGKTNILEAAYLCSTTKSHRGSKDRELIK 62 Query: 67 I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + F +G+ D+ +K + + I+ + IR EL L I + Sbjct: 63 FDADEAHIRMFVNKDGISRKIDMHLK-----KSKPKGIAIDGIPIRKASELFGLLNIVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + +D + + + ++ RN+LL + F S + Sbjct: 118 SPEDLNIIKNGPGERRRFMDLELCQLDKLYLSNLSSYNHVLNQRNKLLKDIAFQESLKDT 177 Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-- 240 +E Q + G +I R I+ ++ IME + S+TG + K + + Sbjct: 178 LEIWDEQFVQYGREIIETRRRFIDEING-IMEKIHS--------SITGNRE-KIELVYEP 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGI 299 E + ++L R+ D ++T +GPHR D V I I +GS G+Q+ + + Sbjct: 228 SVPDENFYQELSKNREKDCRFKQTSVGPHRDDFSVKV--NGIDIRRYGSQGQQRTAALSL 285 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 L+ ++ P+LLLD++ + LD +++N L ++ + + I TG D Sbjct: 286 KLSEIYMVKKVIKDMPVLLLDDVLSELDSNRQNYLLNSISHVQTMITCTGLD 337 >gi|322373988|ref|ZP_08048522.1| DNA replication and repair protein RecF [Streptococcus sp. C150] gi|321276954|gb|EFX54025.1| DNA replication and repair protein RecF [Streptococcus sp. C150] Length = 367 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 163/350 (46%), Gaps = 26/350 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++I FRNY+ + F IF+G N GKTNILEAI FL+ R R S ++ + Sbjct: 6 IDIQHFRNYSEAYVTFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQ--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F + ++ G + LE R ++N + + + H+ + P Sbjct: 63 --FQQSTLKLSGTVHRRSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188 ++ G RR+F+D + I P + + ++ +++ RN L + D + S ++ Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDIDFLSVLDE 180 Query: 189 QMAELGVKINIARVEMINALS-------SLIMEYVQKENFPH-IKLSLTGFLDGKFDQSF 240 Q+A+ G ++ R++ I L SL+ +++ N + +SL Q+ Sbjct: 181 QLADFGARVIEHRLDFIKQLEVEADKHHSLLSNQIERLNISYESNISL---------QNH 231 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++++ + L K D + T +GPHR DL D + + GS G+Q+ +++ + Sbjct: 232 KSIRQAFLITLRQNHKRDIFKKNTGVGPHRDDLTFYIND--MNASFGSQGQQRSLILSLK 289 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +A LI N TG PILLLD++ + LD ++ L + D Q FMT T Sbjct: 290 MAEIALIRNVTGEFPILLLDDVMSELDNHRQLKLLESI-DKEVQTFMTTT 338 >gi|229551100|ref|ZP_04439825.1| recombination protein F [Lactobacillus rhamnosus LMS2-1] gi|258538196|ref|YP_003172695.1| DNA replication and repair protein recF [Lactobacillus rhamnosus Lc 705] gi|229315561|gb|EEN81534.1| recombination protein F [Lactobacillus rhamnosus LMS2-1] gi|257149872|emb|CAR88844.1| DNA replication and repair protein recF [Lactobacillus rhamnosus Lc 705] Length = 372 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 167/357 (46%), Gaps = 23/357 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNYA++ F + + +G+N GKTN+LEAI L+ R R + ++ Sbjct: 1 MKLDHLTLKNYRNYATVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G + +LE + +I+ + + + H + Sbjct: 61 IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + P++ + ++ ++ RN L + + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLD 233 + + +A G ++ AR +++ +S I + +K F + + +T L Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAY-QTQVTADLR 234 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 +Q + AL +AK+ R+++ + +L+GPHR D++ DK + GS G+Q+ Sbjct: 235 QDSEQVYEALGALFAKQ--QSREIEQGT--SLVGPHRDDVLFIVNDKDVA-NFGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAI-QAKVQTFLTTT 345 >gi|312897425|ref|ZP_07756849.1| putative recombination protein F [Megasphaera micronuciformis F0359] gi|310621486|gb|EFQ05022.1| putative recombination protein F [Megasphaera micronuciformis F0359] Length = 370 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 99/353 (28%), Positives = 162/353 (45%), Gaps = 16/353 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I+ LNI RNY + F A + G+NG GKTN+LEA+ G+ +R + D+ Sbjct: 5 RIRLLNI---RNYEEADISFPATVIVLYGNNGQGKTNLLEALYTGCIGKSYRGVTDVDLL 61 Query: 66 RIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R + S F R + + +I I + + V +ND +R EL L+ Sbjct: 62 RKSATNGSVIIDFIRNKTEQ---NIKIVFSLHEKKRV---SVNDTKVR-TRELFGILQEV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P ++ G RRRFLD + +P + + ++ + + + RN LL ++ Sbjct: 115 MFSPEDLQLIKGNPALRRRFLDMEISQTNPSYYKMLLQYNKAVSQRNILLKRMKYEKDIS 174 Query: 184 -SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+A L I R E + +S ++ E + + LT ++ + Sbjct: 175 LHEWDLQLARLAAYIVNKRKESLEKISVVVKEIYRNLTSEKEIVKLT-YIQPYKGSTVED 233 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++ Y + L R+ D + T IGPHR D +V+ D GS G+Q+ ++ + +A Sbjct: 234 TEDVYYELLRKNREKDIYRQSTSIGPHRDDFVVE-NDLGELKKFGSQGQQRTAVLALKMA 292 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 I G PILLLD++ + LDE++RNAL V Q F+T TD S F Sbjct: 293 ELEFIKKENGEYPILLLDDVMSELDEERRNALLSFVQG-KVQTFITTTDDSFF 344 >gi|195979034|ref|YP_002124278.1| recombination protein F [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226737837|sp|B4U113|RECF_STREM RecName: Full=DNA replication and repair protein recF gi|195975739|gb|ACG63265.1| DNA replication and repair protein RecF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 369 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 13/347 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK LN++ +RNY F +F+GDN GKTN LEAI FLS R R S D+ Sbjct: 3 IKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDLIY 62 Query: 67 IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S T R+ G ++LE R +IN + + + + + Sbjct: 63 FDERDCSISGTLERLSG-------RVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L + DS + Sbjct: 116 FAPEDLQLVKGSPSLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDSDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ G ++ R+ + +L+ ++ Q + KLS++ F+ + Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEANKHHQAISNGLEKLSISYQASVSFEHQ-QEI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + + T +GPHR DLI + + S G+ + +++ + +A Sbjct: 235 YQQFMDQLKTTHQRDFLRKNTGVGPHRDDLI--FYINGMNANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 L+ TG PILLLD++ + LD ++ L V Q F+T T Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNIRQTKLLEAVKKENVQTFITTT 339 >gi|330813295|ref|YP_004357534.1| DNA recombination and repair protein RecF [Candidatus Pelagibacter sp. IMCC9063] gi|327486390|gb|AEA80795.1| DNA recombination and repair protein RecF [Candidatus Pelagibacter sp. IMCC9063] Length = 362 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 103/378 (27%), Positives = 176/378 (46%), Gaps = 36/378 (9%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KIK N F+++ + + + G+NG+GKTN+LE++SF S +G R + Sbjct: 6 KIKLQN---FKSHTLFEKNIPSNNIVIHGNNGIGKTNLLESLSFFSNSKGMRANKLENFL 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETR--------------DDRSVRCLQINDVVIR 111 + + S FA+ E ++ S + + D + LQI ++V Sbjct: 63 Q-KQNNIQSEFAQAECQLKQSNYSTNISYKIYKQADQISKNFFIDSKKSSNLQIANLVNF 121 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 + WL P MD+I +++F+D+++ ++ R + DF++L R Sbjct: 122 I-----------WLSPHMDKIMYEEGSIKKKFIDKIISNLNQDFSRYLSDFKKLSEERIA 170 Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 LLT + D W S +E++MA L I I R + I L+ L E ++ F K++++ Sbjct: 171 LLTNSH-DIKWISIVESKMAILFYLILIERRKKIKDLNILAEEKLKL--FSRFKINISNE 227 Query: 232 LDGK-FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 L+ FD+ C + E K F+ R +D+ +R P+ + K + STG Sbjct: 228 LEKYLFDEKKCII--EIEKIFFNNRSLDTSIKRNTFSPNTDRVTFFNRTKNLNSELCSTG 285 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 EQK +L+ I LA + ILL DEIS+H+DE F V +Q + TGT Sbjct: 286 EQKSILLSIILAFGWMYK-QRNIQFILLFDEISSHIDEKNMENFFTEVAKFETQAWYTGT 344 Query: 351 DKSVFDSLNETAKFMRIS 368 K++F ++ A F+ ++ Sbjct: 345 KKNIFQVIDNKAFFIDLA 362 >gi|225871475|ref|YP_002747422.1| DNA replication and repair protein RecF [Streptococcus equi subsp. equi 4047] gi|254790489|sp|C0MBG1|RECF_STRE4 RecName: Full=DNA replication and repair protein recF gi|225700879|emb|CAW95638.1| DNA replication and repair protein RecF [Streptococcus equi subsp. equi 4047] Length = 369 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 13/347 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK LN++ +RNY F +F+GDN GKTN LEAI FLS R R S D+ Sbjct: 3 IKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDLIY 62 Query: 67 IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S T R+ G ++LE R +IN + + + + + Sbjct: 63 FDERDCSISGTLERLSG-------RVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L + D+ + Sbjct: 116 FAPEDLQLVKGSPNLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDNDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ G ++ R+ + +L+ ++ Q + KLS++ F+ + Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEANKHHQAISNGLEKLSISYQASVSFEHQ-QEI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + + T +GPHR DL+ D A S G+ + +++ + +A Sbjct: 235 YQQFMNQLKTTHQRDFLRKNTGVGPHRDDLVFYINDMNANFA--SQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 L+ TG PILLLD++ + LD ++ L V Q F+T T Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNTRQTKLLGAVKKENVQTFITTT 339 >gi|322388468|ref|ZP_08062071.1| recombination protein F [Streptococcus infantis ATCC 700779] gi|321140781|gb|EFX36283.1| recombination protein F [Streptococcus infantis ATCC 700779] Length = 363 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 93/371 (25%), Positives = 167/371 (45%), Gaps = 20/371 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+I +FRNY + + F+ + +FVG N GKTN+LE+I FL+ R R + ++ + Sbjct: 3 LKNLSIKQFRNYRDVEVNFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNLIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F +V G+ SI LE + R ++N + + + H+ + Sbjct: 63 -----FEEEQLQVSGILQKKTASIPLEIDLTQKGRITKVNYLKQARLSDYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L + D ++ S Sbjct: 118 PEDLQLVKGAPAIRRKFIDIELGQIKPIYLSDLSSYNHVLKQRNTYLKSTQNIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQSF 240 ++ Q+ E G ++ R + I + + Q EN F+D K Sbjct: 178 LDDQLVEYGCRVMNHRADFIQKMELFGKKKHFDISDQLENLSIRYQPFVNFVDKK----- 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L E + L R D + T +GPHR D+I + + + GS G+ + +++ I Sbjct: 233 -HLAESFHIALQKSRPRDLFKKNTGVGPHRDDMI--FMINGMEASFGSQGQHRSLVLSIK 289 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L + Sbjct: 290 LAEIELMESITKESPILLLDDVMSELDNTRQLKLLETISH-NIQTFITTTSLDHLQNLPD 348 Query: 361 TAKFMRISNHQ 371 + N Q Sbjct: 349 NLSVFTVDNGQ 359 >gi|227550643|ref|ZP_03980692.1| recombination protein F [Enterococcus faecium TX1330] gi|257896290|ref|ZP_05675943.1| recombination protein F [Enterococcus faecium Com12] gi|227180222|gb|EEI61194.1| recombination protein F [Enterococcus faecium TX1330] gi|257832855|gb|EEV59276.1| recombination protein F [Enterococcus faecium Com12] Length = 374 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 94/360 (26%), Positives = 166/360 (46%), Gaps = 29/360 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A ++G ++ LE + R +IN + + + + + Sbjct: 61 --IG---WNDDQAMIQGEIAKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKL--SLTGF 231 + + Q+A G K+ AR + I N+L I + ++ ++ SL Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235 Query: 232 LDGKFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + F AL + KK LF G T +GPHR DL + ++ +GS G Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRG--------TTTVGPHRDDLSF-FINQKNVQTYGSQG 286 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA LI TG PILLLD++ + LD++++ L + + Q F+T T Sbjct: 287 QQRTTALSIKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345 >gi|225575694|ref|ZP_03784304.1| hypothetical protein RUMHYD_03787 [Blautia hydrogenotrophica DSM 10507] gi|225037098|gb|EEG47344.1| hypothetical protein RUMHYD_03787 [Blautia hydrogenotrophica DSM 10507] Length = 361 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 158/355 (44%), Gaps = 24/355 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + FRNY SL L FD I GDN GKTN+LEA+ + + + ++ Sbjct: 3 IESVQLKNFRNYQSLELEFDQGTNILFGDNAQGKTNVLEAVYLCGTTKSHKGSKDREMIH 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 S + E + D+ +K + + IN + I+ EL + + Sbjct: 63 FDEEESHIRMIVKKEHISYKIDMHLK-----KNKAKGIAINGIPIKKARELFGIVNFVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRFLD + +D + + ++ R++ RN+LL + F + Sbjct: 118 SPEDLNIIKNGPGERRRFLDMELCQLDRIYLNDLANYNRIVNQRNKLLKDLAFQPELQDT 177 Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ Q+A G KI R + L+ LI + I +LTG + K + ++ Sbjct: 178 MDIWNQQLASHGKKIIEKRYSFVKELNELIQK---------IHQNLTGGTE-KLEVTYEP 227 Query: 243 LKE--EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGI 299 E + +L + D R T +GPHR DL V I I +GS G+Q+ + + Sbjct: 228 NVESNNFEGELQRQNRRDMQLRTTTVGPHRDDLCVTV--NGIDIRRYGSQGQQRTAALSL 285 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 LA L+ P+LLLD++ + LD +++N L + DI + I TG D V Sbjct: 286 KLAEIYLVKKLIKDTPVLLLDDVLSELDRNRQNYLLDSIHDIQTLITCTGLDDFV 340 >gi|296118606|ref|ZP_06837184.1| RecF protein [Corynebacterium ammoniagenes DSM 20306] gi|295968505|gb|EFG81752.1| RecF protein [Corynebacterium ammoniagenes DSM 20306] Length = 418 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 104/363 (28%), Positives = 169/363 (46%), Gaps = 33/363 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L++ +FR++ L+L D +FVG NG GKTNI+EA+ +++ R A + R Sbjct: 3 IRELDLRDFRSWTELKLDLDPGIVLFVGRNGFGKTNIVEALGYVAHLSSHRVNQDAPLVR 62 Query: 67 IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ S S A +G E A + IK + QIN + EL ++ Sbjct: 63 QGTASARVSATAVNQGRELTAHMLIK-----PHAANQAQINRTRCKSPRELLGVVKTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178 P + G ERRR+LD ++ PR D+++++R RN LL GY Sbjct: 118 SPEDLALVRGEPAERRRYLDDIIATRTPRLAGVKADYDKVLRQRNALLKSASAAMRRGYG 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP-HIKLSL 228 D+ S++ + Q+A LG ++ AR+E+I+ LS LI E + E+ P HI Sbjct: 178 DTEGASALATLDVWDTQLATLGAQVINARLELIDELSDLIPAAYEGLAPESRPAHIAYKA 237 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHG 287 T D S + E ++ + R +L+GPHR DL + + A Sbjct: 238 T------IDTSDRDVLEAVMLAELGTKRQREIERGISLVGPHRDDLEL-HLGTAPAKGFA 290 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + A +L+ + PIL+LD++ + LD +R L ++ D+ Q+F+ Sbjct: 291 SHGETWSYAIALRFAEFQLLRSEDS-DPILILDDVFSELDAKRREKLVKLAADV-EQVFI 348 Query: 348 TGT 350 T Sbjct: 349 TAA 351 >gi|118443917|ref|YP_879295.1| recombination protein F [Clostridium novyi NT] gi|166220706|sp|A0Q3U3|RECF_CLONN RecName: Full=DNA replication and repair protein recF gi|118134373|gb|ABK61417.1| recF protein [Clostridium novyi NT] Length = 361 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 92/370 (24%), Positives = 177/370 (47%), Gaps = 23/370 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + FRNY L L + +F+GDN GKTNILE+I + S G+ R ++ + Sbjct: 3 IKNLELINFRNYEILSLKLHSGINVFIGDNAQGKTNILESIYYCSIGKSHRTNKDKELIK 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ ++ S + E ++ DI I E + + +++N + ++ + +L + Sbjct: 63 WGARDAYISVYISKERLDKKIDIKIFKEGK-----KGVRVNSIKLKTISDLIGVFNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I RR+FLD + ++ ++ ++ + +++ RN +L + ++ Sbjct: 118 SPEDLKIVKESPSYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNTILRKWNSNTEVTEV 177 Query: 186 IEAQMAELGVKINIARVEMINALS---SLIMEYV--QKENFPHIKLSLTGFLDGKFDQSF 240 + Q+++ G I R++ I +LS + I + + QKEN ++ L+ + + Sbjct: 178 YDHQLSKYGSYIIKERLKYIESLSIRGNKIHKDITSQKENIEFKYITSIKDLNNIQNDFY 237 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E K G T GPHR D V+ + T GS G+Q+ ++ I Sbjct: 238 NLLRENVKKDFEKG--------STSFGPHRDDFAVN-INNTDTRTFGSQGQQRTAVLTIK 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN 359 LA +I TG P+LLLD++ + LD +++ + + + Q +TGT + + L+ Sbjct: 289 LASLEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIREF--QTIITGTGLIDIREYLD 346 Query: 360 ETAKFMRISN 369 + K +++N Sbjct: 347 DHVKLFKVTN 356 >gi|182416742|ref|ZP_02624843.2| DNA replication and repair protein RecF [Clostridium butyricum 5521] gi|237669606|ref|ZP_04529584.1| DNA replication and repair protein RecF [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379399|gb|EDT76894.1| DNA replication and repair protein RecF [Clostridium butyricum 5521] gi|237654840|gb|EEP52402.1| DNA replication and repair protein RecF [Clostridium butyricum E4 str. BoNT E BL5262] Length = 360 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/371 (23%), Positives = 172/371 (46%), Gaps = 18/371 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VT 65 IK + ++ +RNY +L L +F+GDN GKTN+LEAI + + + R + + + Sbjct: 3 IKNIMLANYRNYETLSLELSKNVNVFIGDNAQGKTNVLEAIYYCAFAKSHRTSKDRELIN 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 ++ S + ++ DI+I RD + + +++N + + + EL + Sbjct: 63 WKNDKAYISLLVGKDRLDKRIDINI---LRDGK--KAIKVNSIKVAKIGELFGTFNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P ++ RR+ LD + I+ ++ ++ + +++ RN LL F+ Sbjct: 118 SPEDLKVIKEAPNLRRKLLDMELSQINKKYYFNLVQYNKILNERNILLKSRNFNEDVLEV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFDQSFCA 242 + Q+ + I R+E I+ + + E + +E + IK + +D Sbjct: 178 YDLQLVDYADYIISKRLEYIDKI-NFYGEKIHREITADKEEIKFKYSCNVD------LTN 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 K Y KKL D K D T +GPHR D V + + GS G+Q+ ++ + + Sbjct: 231 YKNNYLKKLQDNIKRDREKGLTSVGPHRDDFNV-FLNDIDAKTFGSQGQQRTAILTMKFS 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++I TG P+LLLD++ + LD +++ + + I + I TG + + D L++ A Sbjct: 290 SLKIIKEITGEYPVLLLDDVLSELDVNRKKYILSTIHGIQTIITCTGIE-VLSDYLDDNA 348 Query: 363 KFMRISNHQAL 373 K +S+ + L Sbjct: 349 KIFNVSSGRIL 359 >gi|257878649|ref|ZP_05658302.1| recombination protein F [Enterococcus faecium 1,230,933] gi|257812877|gb|EEV41635.1| recombination protein F [Enterococcus faecium 1,230,933] Length = 374 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 23/357 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A ++G ++ LE + R +IN + + + + + Sbjct: 61 --IG---WTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQTRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLD 233 + + Q+A G K+ AR + + N+L I QKE +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITH--QKE---QLEIEYLTAVD 230 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + ++E++ L +K D T +GPHR DL + ++ +GS G+Q+ Sbjct: 231 SLETHTQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSF-FINQKNVQTYGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA LI TG PILLLD++ + LD++++ L + + Q F+T T Sbjct: 290 TTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345 >gi|257888092|ref|ZP_05667745.1| recombination protein F [Enterococcus faecium 1,141,733] gi|293379371|ref|ZP_06625515.1| DNA replication and repair protein RecF [Enterococcus faecium PC4.1] gi|257824146|gb|EEV51078.1| recombination protein F [Enterococcus faecium 1,141,733] gi|292641894|gb|EFF60060.1| DNA replication and repair protein RecF [Enterococcus faecium PC4.1] Length = 374 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 29/360 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A ++G ++ LE + R +IN + + + + + Sbjct: 61 --IG---WNDDQAMIQGEIAKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKL--SLTGF 231 + + Q+A G K+ AR + I N+L I + ++ ++ SL Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235 Query: 232 LDGKFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + F AL + KK LF G T +GPHR DL + ++ +GS G Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRG--------TTTVGPHRDDLSF-FINQKNVQTYGSQG 286 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + + LA LI TG PILLLD++ + LD++++ L + + Q F+T T Sbjct: 287 QQRTTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345 >gi|160946607|ref|ZP_02093810.1| hypothetical protein PEPMIC_00565 [Parvimonas micra ATCC 33270] gi|158446991|gb|EDP23986.1| hypothetical protein PEPMIC_00565 [Parvimonas micra ATCC 33270] Length = 366 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/358 (25%), Positives = 168/358 (46%), Gaps = 33/358 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ FRN + F +FVG NG+GKTN+LEAI FR+A D G Sbjct: 6 IHLTNFRNLKDISFEFKENINVFVGKNGIGKTNVLEAIYISLVASSFRQAKQEDFISFGE 65 Query: 70 P-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + TF R +G E I DD+ + +I+D+ I+ V+EL + P Sbjct: 66 NFTKVDTFVREKGFEN----KISFLYTDDKK-KVFKIDDIKIKSVNELYDFSNVIGFFPD 120 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 +I + RR F D + + +++++ + ++ RN LL S + + A Sbjct: 121 ELKIITESPNFRRNFFDSFIMKMTKGYKQKLNLYRNVIFRRNLLLKGMNLSSFYKQEMNA 180 Query: 189 ---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFD 237 ++A L +I++ R ++I+ ++ + NF H +LS + K Sbjct: 181 LTKKLALLCYEISMERKKLIDLINKEV-------NFIHQQLSGETLYIEYESILSNHKRS 233 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVV 295 ++ C +E + K+DS ++ T G H+ + I++ D + S G+++ + Sbjct: 234 ENECL--KEILENFSKSYKIDSENKITSFGIHKENFKFILNGNDAK---SFSSQGQKRNI 288 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 ++ I + + G PI+LLD++ + LDED+R + +TD +Q+F+T TDKS Sbjct: 289 IITIKMCQKNIFEEYKGVKPIILLDDLFSELDEDRRYEILEYLTD--NQVFITTTDKS 344 >gi|315640353|ref|ZP_07895469.1| recombination protein F [Enterococcus italicus DSM 15952] gi|315483889|gb|EFU74369.1| recombination protein F [Enterococcus italicus DSM 15952] Length = 373 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 166/364 (45%), Gaps = 38/364 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + FRNY L+L F IF+G+N GKTN+LE+I L+ R R + ++ Sbjct: 1 MRLNSLTLRHFRNYDELQLPFAKDLIIFLGENAQGKTNLLESIYVLAMTRSHRTTNEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A + G+ +I LE + R ++N + + + L + Sbjct: 61 IEWDCAE-----AYLAGVVEKKQQTIPLELGLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + ID + ++ ++++++ RN+ L + D Sbjct: 116 FAPEDLSLVKGTPQLRRKFLDMEIGQIDSVYLYNLVQYQQVLKQRNQYLKQLAEKKQTDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGF-- 231 + + Q+ G KI R+ + N L LI + +KE + F Sbjct: 176 LYLDILTEQLVTFGSKILWTRINFVKKLEYWANQLHQLISQ--EKETLTLHYDATVAFEE 233 Query: 232 -----LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 ++ + Q+F A++ AK+LF R+M TLIGPHR +L+ K + + Sbjct: 234 ANLADIEAAYSQAFAAIR---AKELF--RQM------TLIGPHRDELVFFINGKNVQ-TY 281 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 GS G+Q+ + + LA L+ TG PILLLD++ + LD+ ++ L + + Q F Sbjct: 282 GSQGQQRTTALSVKLAEIDLMKAETGEYPILLLDDVMSELDDSRQVHLLEAI-EGKVQTF 340 Query: 347 MTGT 350 +T T Sbjct: 341 LTTT 344 >gi|116493578|ref|YP_805312.1| recombination protein F [Lactobacillus casei ATCC 334] gi|227533503|ref|ZP_03963552.1| recombination protein F [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|122264959|sp|Q03D52|RECF_LACC3 RecName: Full=DNA replication and repair protein recF gi|116103728|gb|ABJ68870.1| DNA replication and repair protein RecF [Lactobacillus casei ATCC 334] gi|227188832|gb|EEI68899.1| recombination protein F [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 371 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 168/357 (47%), Gaps = 23/357 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNYA++ F + + +G N GKTN+LE+I L+ R R + ++ Sbjct: 1 MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G S +LE + +I+ + + + H + Sbjct: 61 IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + P++ + ++ ++ RN L + + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKE----NFPHIKLSLTGFLD 233 + + +A G ++ AR +++ +S + I + + K +F + + + L Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSY-QTQVDPSLR 234 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G +Q + AL E +AK+ R+++ + +L+GP R D++ DK + GS G+Q+ Sbjct: 235 GNSEQVYTALGEMFAKQ--QAREIEQGT--SLVGPQRDDVLFIVNDKDVA-NFGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTT 345 >gi|229826861|ref|ZP_04452930.1| hypothetical protein GCWU000182_02245 [Abiotrophia defectiva ATCC 49176] gi|229788479|gb|EEP24593.1| hypothetical protein GCWU000182_02245 [Abiotrophia defectiva ATCC 49176] Length = 364 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 171/363 (47%), Gaps = 36/363 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK L +++FRN ++ + FD I GDN GKTNILE+I R + + ++ Sbjct: 1 MRIKSLALNDFRNIENISIEFDKGLNIIYGDNAQGKTNILESIYVAGTTRSHKGSKDKEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSV---------RCLQINDVVIRVVD 114 ++G E A I I LE D DR + + + ++ + + Sbjct: 61 IKLG--------------EDEAHIRIILEKDDLDRKIDMHLKKSKSKGVAVDGIPVHKSA 106 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 ++ +++ + P + ERRRF+D + I+ + + + +++ RN LL Sbjct: 107 DIFGIVQLIFFSPEDLSMIKDGPAERRRFIDMELSQIEKIYLYNLSKYNKILTQRNNLLK 166 Query: 175 EGYFDSSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 + +D+ +++ Q+ G++I +R + I+ L+ +I H KL+ G Sbjct: 167 QISYDTGLSDTLDVWDEQLVSTGLEIIKSRRKFISELNEIIKPI-------HEKLT-GGK 218 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + + + + +E++ KL GR D + TL GP R D+ Y +K +GS G+ Sbjct: 219 EELEIEYNPNVTEEDFKDKLKSGRNSDIYQKTTLTGPQRDDITF-YINKNDVRKYGSQGQ 277 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 Q+ + + L+ L TG PILLLD++ + LD ++N L + DI + I TG + Sbjct: 278 QRSTALSLKLSEIELFKKKTGDNPILLLDDVLSELDRSRQNYLIESIGDIQTIITCTGLE 337 Query: 352 KSV 354 + V Sbjct: 338 EFV 340 >gi|219853347|ref|YP_002470469.1| hypothetical protein CKR_0004 [Clostridium kluyveri NBRC 12016] gi|219567071|dbj|BAH05055.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 367 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 172/364 (47%), Gaps = 29/364 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK+L + FRNY L + FD IFVGDN GKTNILE++ + S G+ R + ++ Sbjct: 6 IKYLKLINFRNYKELDIEFDKNINIFVGDNAQGKTNILESMYYCSIGKSPRTSKDKELIN 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + ++ +V ++ L + I+++ + + + IN + + + EL L + Sbjct: 66 WDNKE---SYIKVHILKKLFNKKIEIKIFKEGK-KGININSIKVSKLSELMGVLNVVMFS 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P +I + RR+FLD + ++ ++ + +++ RN +L + Y D Sbjct: 122 PEDLKIIKESPVYRRKFLDIELCKFSKKYYYGLVQYNKVLTARNIILKKWNKGNYID--I 179 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241 + Q+A+ G I R + LS +K H ++ +G + +F C Sbjct: 180 LQVYDKQLAKYGEVIIKLRNNYLKKLS-------EKGKVIHSDIT-SGIENIEFKYMTCL 231 Query: 242 ----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVL 296 ++++ K L RK D TL GPHR D IV+ + + + GS G+Q+ + Sbjct: 232 TNFDNIEDDLFKILEFNRKKDIYKGITLYGPHRDDFIVNI--NGVNVRNFGSQGQQRTSI 289 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KS 353 + + A +I G P+LLLD++ + LD++++ + + DI + I TG D KS Sbjct: 290 LTMKFASLEIIKEIIGEYPVLLLDDVLSELDKNRQKYILSSIKDIQTFITCTGIDDIKKS 349 Query: 354 VFDS 357 + D Sbjct: 350 IIDE 353 >gi|153952674|ref|YP_001393439.1| recombination protein F [Clostridium kluyveri DSM 555] gi|189039621|sp|A5N460|RECF_CLOK5 RecName: Full=DNA replication and repair protein recF gi|146345555|gb|EDK32091.1| RecF [Clostridium kluyveri DSM 555] Length = 364 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 172/364 (47%), Gaps = 29/364 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK+L + FRNY L + FD IFVGDN GKTNILE++ + S G+ R + ++ Sbjct: 3 IKYLKLINFRNYKELDIEFDKNINIFVGDNAQGKTNILESMYYCSIGKSPRTSKDKELIN 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + ++ +V ++ L + I+++ + + + IN + + + EL L + Sbjct: 63 WDNKE---SYIKVHILKKLFNKKIEIKIFKEGK-KGININSIKVSKLSELMGVLNVVMFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P +I + RR+FLD + ++ ++ + +++ RN +L + Y D Sbjct: 119 PEDLKIIKESPVYRRKFLDIELCKFSKKYYYGLVQYNKVLTARNIILKKWNKGNYID--I 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241 + Q+A+ G I R + LS +K H ++ +G + +F C Sbjct: 177 LQVYDKQLAKYGEVIIKLRNNYLKKLS-------EKGKVIHSDIT-SGIENIEFKYMTCL 228 Query: 242 ----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVL 296 ++++ K L RK D TL GPHR D IV+ + + + GS G+Q+ + Sbjct: 229 TNFDNIEDDLFKILEFNRKKDIYKGITLYGPHRDDFIVNI--NGVNVRNFGSQGQQRTSI 286 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KS 353 + + A +I G P+LLLD++ + LD++++ + + DI + I TG D KS Sbjct: 287 LTMKFASLEIIKEIIGEYPVLLLDDVLSELDKNRQKYILSSIKDIQTFITCTGIDDIKKS 346 Query: 354 VFDS 357 + D Sbjct: 347 IIDE 350 >gi|205371909|ref|ZP_03224729.1| recombination protein F [Bacillus coahuilensis m4-4] Length = 372 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 171/370 (46%), Gaps = 23/370 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L++ +RNY + L F+ + +F+G N GKTNI+E+I L+ + R ++ D+ R Sbjct: 3 IQELSVENYRNYETESLEFENRVNVFLGQNAQGKTNIMESIYVLAMAKSHRTSNDKDLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + S +AR++G + SI LE + + ++N + + + ++ + Sbjct: 63 -----WDSEYARIKGRIQKRNGSIPLELTISKKGKKAKLNHLEQSKLSQYIGNMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDSSW 182 P + G RRRF+D + + P + + + ++++ RN L + D + Sbjct: 118 PEDLNLVKGSPQVRRRFIDMEIGQVSPVYLHDINQYNKILQQRNSYLKQAQQRKKVDETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 + Q ++ VKI R + ++ L+ E+ + N + +S + Sbjct: 178 LDVLTDQFIQVAVKIVQKRFQFVH----LLEEWAKPIHSGISRNLEELTISYKPSVHVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 DQ + + E + ++ + R+ + TL GPHR DL + + GS G+Q+ Sbjct: 234 DQDWSKMIEVFEERTKEVREREKERGVTLFGPHRDDLEFRVNGRDVQ-TFGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA LI + G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSVKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSTEGID 351 Query: 357 --SLNETAKF 364 +L E A F Sbjct: 352 HQTLKEAATF 361 >gi|191636828|ref|YP_001985994.1| recombination protein F [Lactobacillus casei BL23] gi|301065130|ref|YP_003787153.1| recombinational DNA repair ATPase [Lactobacillus casei str. Zhang] gi|226737807|sp|B3W6Q9|RECF_LACCB RecName: Full=DNA replication and repair protein recF gi|190711130|emb|CAQ65136.1| DNA replication and repair protein recF [Lactobacillus casei BL23] gi|300437537|gb|ADK17303.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus casei str. Zhang] gi|327380866|gb|AEA52342.1| DNA replication and repair protein recF [Lactobacillus casei LC2W] gi|327384031|gb|AEA55505.1| DNA replication and repair protein recF [Lactobacillus casei BD-II] Length = 371 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 168/357 (47%), Gaps = 23/357 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNYA++ F + + +G N GKTN+LE+I L+ R R + ++ Sbjct: 1 MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G S +LE + +I+ + + + H + Sbjct: 61 IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + P++ + ++ ++ RN L + + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKE----NFPHIKLSLTGFLD 233 + + +A G ++ AR +++ +S + I + + K +F + + + L Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSY-QTQVDPSLR 234 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G +Q + AL E +AK+ R+++ + +L+GP R D++ DK + GS G+Q+ Sbjct: 235 GDSEQVYTALGEMFAKQ--QAREIEQGT--SLVGPQRDDVLFIVNDKDVA-NFGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTT 345 >gi|325280925|ref|YP_004253467.1| DNA replication and repair protein recF [Odoribacter splanchnicus DSM 20712] gi|324312734|gb|ADY33287.1| DNA replication and repair protein recF [Odoribacter splanchnicus DSM 20712] Length = 364 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 96/359 (26%), Positives = 165/359 (45%), Gaps = 23/359 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K LNI F+N A L F + FVG+NGVGKTN+L+AI LS + + R Sbjct: 3 LKELNIINFKNIAEATLTFTSGFNCFVGNNGVGKTNVLDAIYHLSMCKSYFNLPDLQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P FF + E G ++++ + + + + N + D+L++H+ + LV Sbjct: 63 HEEP-FFVVQGKYE--RGGEELTVYCGVKRGQK-KVFKKNQ---KAYDKLSEHIGLIPLV 115 Query: 127 ---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDS 180 P + G S ERR+ +D ++ D + R+I + + + RN LL + D Sbjct: 116 MISPEDFILIDGGSEERRKLVDGIISQCDRVYLHRLIRYNKALTQRNMLLKSAAGKFLDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 Q+AE G I R+ + S+ Y ++ + ++ L K Sbjct: 176 EMLEVWNEQLAEHGEAIRQKRIAFLKEFRSVFQTYYERLSLGREEVCLEYKPSVKEGNFL 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ALK+ + D + T +G HR DL+++ D A+ GS G++K L+ + Sbjct: 236 TALKQAADR--------DRLLTYTTVGIHRDDLVLNIGDYAVRKI-GSQGQKKTFLIALK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL 358 LA + + P+LLLD+I LD D+ + +IV ++ Q+F+T T++ D + Sbjct: 287 LAQYHWLHQMSEVKPLLLLDDIFDKLDADRVEQIVKIVGGEMFGQVFITDTNRGHIDDI 345 >gi|306828609|ref|ZP_07461803.1| recombination protein F [Streptococcus mitis ATCC 6249] gi|304429217|gb|EFM32303.1| recombination protein F [Streptococcus mitis ATCC 6249] Length = 363 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/370 (24%), Positives = 167/370 (45%), Gaps = 22/370 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 3 LQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + GM SI LE R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGMLQKKTGSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALK 244 ++ Q+ E G ++ R++ I L ++ QK+ H+++S + L + + Sbjct: 178 LDDQLVEYGCRVIKHRIKFIKDLE----KFGQKK---HLEISNQSEELSISYQSTVNFTN 230 Query: 245 EE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 EE + L R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 231 EEVLMDSFKMALEKSRSRDLFKKNTGVGPHRDD--IAFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISN 369 E I N Sbjct: 348 ENLSIFNIQN 357 >gi|255530448|ref|YP_003090820.1| DNA replication and repair protein RecF [Pedobacter heparinus DSM 2366] gi|255343432|gb|ACU02758.1| DNA replication and repair protein RecF [Pedobacter heparinus DSM 2366] Length = 367 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 168/380 (44%), Gaps = 38/380 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + + F+NY + F FVGDNG GKTN+L+AI +L +G+ + Sbjct: 3 LKNITLLNFKNYTDANVSFSKTVNAFVGDNGAGKTNLLDAIHYLCLCKGYFNPIDTQQIK 62 Query: 67 IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F F R E E I+ ++ + + + + D+L H+ + Sbjct: 63 AGQDLFLIQGDFDRQEKNEK---ITCGVKRNQKKQFKRNK------KEYDKLANHIGLFP 113 Query: 125 LV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GY 177 LV P I S ERRRF+D ++ D + +I + R + RN LL + Sbjct: 114 LVMISPYDTNIIMEGSEERRRFMDNVISQTDTNYLDELILYNRHLLNRNALLKQIAVTRS 173 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGK 235 +D + Q+ G+KI R + + L +Y Q E+ + L L+ Sbjct: 174 YDPTLLEIYNDQLVASGLKIYAKRQQFMIEFIPLFDKYYQFLTEDQERVSLQYQSQLN-- 231 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 D +F L ++ +K D + RT G H+ +LI D A+ GS G+QK Sbjct: 232 -DAAFEQLLQQSVEK-------DKVLERTTTGIHKDELIFTISDMALK-KFGSQGQQKSF 282 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTGTDK- 352 L+ + LA + GF P+LLLD+I LD+ + + L +V+ D G QIF+T T K Sbjct: 283 LIALKLAQYAYLQKYKGFKPLLLLDDIFDKLDDKRMHKLMEMVSHHDFG-QIFITDTGKE 341 Query: 353 ---SVFDSLNETAKFMRISN 369 +VF+ + ++N Sbjct: 342 RVLAVFNKIQVPVTLFEVNN 361 >gi|76787191|ref|YP_330704.1| recombination protein F [Streptococcus agalactiae A909] gi|77406514|ref|ZP_00783567.1| DNA replication and repair protein RecF [Streptococcus agalactiae H36B] gi|77411774|ref|ZP_00788110.1| DNA replication and repair protein RecF [Streptococcus agalactiae CJB111] gi|97180994|sp|Q3JYE9|RECF_STRA1 RecName: Full=DNA replication and repair protein recF gi|76562248|gb|ABA44832.1| DNA replication and repair protein RecF [Streptococcus agalactiae A909] gi|77162165|gb|EAO73140.1| DNA replication and repair protein RecF [Streptococcus agalactiae CJB111] gi|77174886|gb|EAO77702.1| DNA replication and repair protein RecF [Streptococcus agalactiae H36B] Length = 369 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/366 (25%), Positives = 165/366 (45%), Gaps = 14/366 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ +RNY ++ F IF+G N GKTN LEAI FL+ R R S ++ Sbjct: 3 IKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 T V G + I+L + R ++N + + + + + Sbjct: 63 FKHHDVQIT-GEVIRKSGHLSLDIQLSEKG----RITKVNHLKQAKLSDYIGAMTVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+FLD + I P + + ++ +++ RN L T D ++ S Sbjct: 118 PEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+A+ G ++ R + I AL+ Y+ H+ + ++ D+S ++ Sbjct: 178 LDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFT-DKS--SI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + +L D + T IGPHR D+ D I GS G+Q+ +++ + LA Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI T PILLLD++ + LD ++ L + + Q F+T T +L + K Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351 Query: 364 FMRISN 369 +S+ Sbjct: 352 IFNVSD 357 >gi|296875531|ref|ZP_06899603.1| recombination protein F [Streptococcus parasanguinis ATCC 15912] gi|296433455|gb|EFH19230.1| recombination protein F [Streptococcus parasanguinis ATCC 15912] Length = 364 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 96/367 (26%), Positives = 166/367 (45%), Gaps = 13/367 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+I FRNY L + F IF+G N GKTNILE+I FL+ R R + D+ Sbjct: 3 LKQLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDLIY 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S F +V G + LE R ++N + + H+ + Sbjct: 63 FESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + + P + + + +++ RN L D+++ Sbjct: 118 PEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFLEV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +++Q+A G ++ R+E I L + E + + LS+ + F + ++E Sbjct: 178 LDSQLASFGSRVIYHRLEFIKKLEAKAKEKHTRLSDNKEDLSIQ-YQSTVFSEDGNDIEE 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ L R+ D + T IGPHR DL + + GS G+ + V++ + LA Sbjct: 237 QFLSMLEKNRQKDIFRKTTSIGPHRDDLA--FFINNMNATFGSQGQHRSVVLSLKLAEIE 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ T PILLLD++ + LD ++ L +++ Q F+T T D L E + + Sbjct: 295 LMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTT---TLDHLKELPEEL 350 Query: 366 RISNHQA 372 +I QA Sbjct: 351 KIFTIQA 357 >gi|293364503|ref|ZP_06611228.1| recombination protein F [Streptococcus oralis ATCC 35037] gi|307702791|ref|ZP_07639741.1| DNA replication and repair protein recF [Streptococcus oralis ATCC 35037] gi|291317011|gb|EFE57439.1| recombination protein F [Streptococcus oralis ATCC 35037] gi|307623647|gb|EFO02634.1| DNA replication and repair protein recF [Streptococcus oralis ATCC 35037] Length = 363 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/380 (24%), Positives = 166/380 (43%), Gaps = 42/380 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 3 LQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + G+ SI LE R ++N + + + H+ + Sbjct: 63 FDNEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIKLSLTG 230 ++ Q+ E G ++ R++ I N L L + Y NF Sbjct: 178 LDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNFTD------- 230 Query: 231 FLDGKFDQSF-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 D + SF AL++ ++ LF + T +GPHR D + + + + GS Sbjct: 231 --DEQLTNSFKIALEKSRSRDLF--------KKNTGVGPHRDD--IAFYINGMDASFGSQ 278 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+ + +++ I LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T Sbjct: 279 GQHRSLVLSIKLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITT 337 Query: 350 TDKSVFDSLNETAKFMRISN 369 T +L E I N Sbjct: 338 TSLDHLQNLPENLSIFNIQN 357 >gi|302390801|ref|YP_003826621.1| DNA replication and repair protein RecF [Acetohalobium arabaticum DSM 5501] gi|302202878|gb|ADL11556.1| DNA replication and repair protein RecF [Acetohalobium arabaticum DSM 5501] Length = 374 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 165/346 (47%), Gaps = 13/346 (3%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRNY +L L + IF+GDN GKTNILEAI LS G R +++ S Sbjct: 8 LKNFRNYHTLELKLNRNLNIFIGDNAEGKTNILEAIYLLSTGDSHRTNITSEMVNWQQDS 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F+ + + + K+E + ++IND ++ +++L ++ P Sbjct: 68 FY-----ISSLVNRKEQEFKIEFLFKNRKKEVKINDNKLQKLEDLLGYINAIIFSPEDLE 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSSWCSSIEA 188 + G +RR+F++ + ++ + + ++ R+++ RN LL EG Sbjct: 123 LVKGSPSKRRKFINLEISQVNSYYYHNLQEYRRIVKQRNNLLKEIREGKSSKDMLVVWNQ 182 Query: 189 QMAELGVKINIARVEMINALSSL--IMEYVQKENFPHIKLSLTGFLDGKFDQSFC-ALKE 245 Q+ ELG KI R+ ++ LS L +M + ++LS LD + S ++ Sbjct: 183 QLIELGSKIITKRLNALDKLSILARLMHRKITDGLETLELSYQSSLDLNGNNSTTEEIET 242 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 + KKL ++ + ++ GPHR D+I + D T GS G+Q+ + + LA Sbjct: 243 VFTKKLKANQQKEIDRGVSIFGPHRDDIIFEIND-INTRKFGSQGQQRTAALALKLAELE 301 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + G PILLLD++ + LD +++ L +++ + Q F+T T+ Sbjct: 302 FMKSEIGEYPILLLDDVFSELDNNRQQYLLKVIEN-RIQTFITSTE 346 >gi|168187274|ref|ZP_02621909.1| DNA replication and repair protein RecF [Clostridium botulinum C str. Eklund] gi|169294762|gb|EDS76895.1| DNA replication and repair protein RecF [Clostridium botulinum C str. Eklund] Length = 361 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 94/372 (25%), Positives = 178/372 (47%), Gaps = 27/372 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + FRNY L L + +F+GDN GKTNILE+I + S G+ R ++ + Sbjct: 3 IKNLELINFRNYERLSLNLHSGINVFIGDNAQGKTNILESIYYCSIGKSHRTNKDKELIK 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ ++ S + E ++ DI I E + + +++N + ++ + +L + Sbjct: 63 WGARDAYISIYVSKERLDKKIDIKIFKEGK-----KGVRVNSIKLKTISDLIGVFNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I RR+FLD + ++ ++ ++ + +++ RN +L + + Sbjct: 118 SPEDLKIIKESPSYRRKFLDIELSKLNKKYYHSLVIYNKVLNERNTILRKWNSNKEVTEV 177 Query: 186 IEAQMAELGVKINIARVEMINALS---SLIMEYV--QKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+++ G I R++ I +LS + I + + QKEN F +I T D Sbjct: 178 YDYQLSKYGSYIIKERLKYIESLSLRGNKIHKDITSQKENIEFKYI----TSIKD----- 228 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 ++ ++ L K D T GPHR D V+ + T +GS G+Q+ ++ Sbjct: 229 -LSNIQNDFYNILRQNIKKDFEKGSTSFGPHRDDFAVN-INATDTRIYGSQGQQRTAVLT 286 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357 I LA +I TG P+LLLD++ + LD +++ + + + Q +TGT + + Sbjct: 287 IKLASLEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIREF--QTIITGTGLIDIREY 344 Query: 358 LNETAKFMRISN 369 L++ K +++N Sbjct: 345 LDDHVKLFKVTN 356 >gi|257899274|ref|ZP_05678927.1| recombination protein F [Enterococcus faecium Com15] gi|293572721|ref|ZP_06683685.1| DNA replication and repair protein RecF [Enterococcus faecium E980] gi|257837186|gb|EEV62260.1| recombination protein F [Enterococcus faecium Com15] gi|291607213|gb|EFF36571.1| DNA replication and repair protein RecF [Enterococcus faecium E980] Length = 374 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 29/360 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A ++G ++ LE + R +IN + + + + + Sbjct: 61 --IG---WNDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKL--SLTGF 231 + + Q+A G K+ AR + I N+L I + ++ ++ SL Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235 Query: 232 LDGKFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + F AL + KK LF G T +GPHR DL + ++ +GS G Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRG--------TTTVGPHRDDLSF-FINQKNVQTYGSQG 286 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + + LA LI TG PILLLD++ + LD++++ L + + Q F+T T Sbjct: 287 QQRTTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345 >gi|116668572|ref|YP_829505.1| recombination protein F [Arthrobacter sp. FB24] gi|166220698|sp|A0JQT5|RECF_ARTS2 RecName: Full=DNA replication and repair protein recF gi|116608681|gb|ABK01405.1| DNA replication and repair protein RecF [Arthrobacter sp. FB24] Length = 401 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 103/386 (26%), Positives = 177/386 (45%), Gaps = 39/386 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++++FR+YA + L + T+ VG NG+GKTN++EAI +L+ R +S A + R Sbjct: 3 LEKLSLTDFRSYAQVDLTLEPGVTVLVGYNGIGKTNLMEAIGYLATLSSHRVSSDAPLLR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ R + + G ++LE R+ R +R D L + Sbjct: 63 FGTE---RALIRAKLVRGGQSTVLELEINGSRANRGRINRSNPVRARDILGI-CQTVLFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSSWC 183 P + G RRRFLD ++ ++ PRH D++R+++ RN LL G F + Sbjct: 119 PEDLALVKGDPSNRRRFLDELLVSLMPRHSATRTDYDRVLKQRNALLKSGRSGKFTAGHE 178 Query: 184 SSIEA---QMAELGVKINIARVEMINAL-SSLIMEYVQ-----KENFPHIKLSLTGFLDG 234 ++++ MA G ++ AR+E++ + L Y Q KE + +L G LD Sbjct: 179 ATLDVWDQHMARAGAELLYARLELVERIRPHLKAAYAQLTDGSKEADAIYRSTLQGILDD 238 Query: 235 KFDQSFCALKEEYAKKLFDGRKMD------------SMSRR-------TLIGPHRSDLIV 275 + A + +++ D R + + SRR +L+GPHR D+ + Sbjct: 239 DGAGAGYAAEPAAVERVEDLRALSVEELTQRYVQAFAASRRKELERGISLVGPHRDDVEL 298 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDEDKRN 332 +A + S GE + + + LA ++ + T G APIL+LD++ A LD +R Sbjct: 299 -ILGEAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELDVQRRR 357 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSL 358 L IV+ + D + D L Sbjct: 358 KLAAIVSGAEQVLVTAAVDADIPDEL 383 >gi|258506999|ref|YP_003169750.1| DNA replication and repair protein recF [Lactobacillus rhamnosus GG] gi|257146926|emb|CAR85899.1| DNA replication and repair protein recF [Lactobacillus rhamnosus GG] gi|259648369|dbj|BAI40531.1| recombination protein RecF [Lactobacillus rhamnosus GG] Length = 372 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 166/357 (46%), Gaps = 23/357 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNYA++ F + + +G+N GKTN+LEAI L+ R R + ++ Sbjct: 1 MKLDHLTLKNYRNYATVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G + +LE + +I+ + + + H + Sbjct: 61 IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + P++ + ++ ++ RN L + + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLD 233 + + +A G ++ AR +++ +S I + +K F + + + L Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAY-QTQVAADLR 234 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 +Q + AL +AK+ R+++ + +L+GPHR D++ DK + GS G+Q+ Sbjct: 235 QDSEQVYEALGALFAKQ--QSREIEQGT--SLVGPHRDDVLFIVNDKDVA-NFGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAI-QAKVQTFLTTT 345 >gi|227541368|ref|ZP_03971417.1| recombination protein F [Corynebacterium glucuronolyticum ATCC 51866] gi|227182919|gb|EEI63891.1| recombination protein F [Corynebacterium glucuronolyticum ATCC 51866] Length = 374 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 161/361 (44%), Gaps = 14/361 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++ L L T+F G NG GKTNI+E+I +L+ R A + R Sbjct: 3 VRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPLVR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + + G E + +++K + Q+N +R EL +R Sbjct: 63 AGADVAQLAATVVSGGRELVVRMTVK-----PHAANLAQLNRTRLRHPRELLGGVRCVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDS-- 180 P + +G RRR +D ++ PR ++ER+++ RN LL + ++ S Sbjct: 118 SPEDLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSMH 177 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 ++Q+A LG ++ AR +I L L+ E E PH + +L ++ Sbjct: 178 GMLDVWDSQLASLGAELVTARSALITRLHPLV-EAAYLEIAPHSRPPAISYLTRDQAETT 236 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + L + R + + RTLIGPH+ DL + Y +A S GE + + Sbjct: 237 ADTEALLLTSLAEIRPREIDAGRTLIGPHKDDLGL-YLGEAPAKGFASHGETWSFAIALK 295 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 +A RL S T G PIL+LD++ A LD +R AL ++ + T + L Sbjct: 296 IAVFRLFS-TGGHIPILILDDVFAELDNPRRQALTSMIRSAEQVLITTAVPTDIPTDLTH 354 Query: 361 T 361 T Sbjct: 355 T 355 >gi|116332685|ref|YP_794212.1| recombination protein F [Lactobacillus brevis ATCC 367] gi|122270619|sp|Q03UE1|RECF_LACBA RecName: Full=DNA replication and repair protein recF gi|116098032|gb|ABJ63181.1| DNA replication and repair protein RecF [Lactobacillus brevis ATCC 367] Length = 384 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 160/372 (43%), Gaps = 51/372 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FRNY + +L F + +G+N GKTN+LEAI L+ R R A+ D+ Sbjct: 3 LQELQLQQFRNYPTAKLTFGQGINVLLGENAQGKTNLLEAIYVLALTRSHRTANDHDLV- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 ++ + A+V G A ++ LE R + ++N + + + L + Sbjct: 62 ----NWQAKTAKVSGRVVKAAGAVPLELTFSRQGKRARVNHLEQARLSQYVGQLNVILFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182 P I G RRRF+D ++PR+ + + L++ RNR L + D + Sbjct: 118 PEDLAIVKGAPTVRRRFMDMEFGQMNPRYLYNLSQYRTLLKQRNRYLKDLQHKQNKDLLF 177 Query: 183 CSSIEAQMAELGVKINIARVEMINAL---------------SSLIMEYV------QKENF 221 S + Q+A G +I R+ M+ L L Y Q + Sbjct: 178 LSVLSDQLAAFGAEIIAQRLAMLQKLEHWAQAIHGEISQQREELTFHYATQVADDQLTDV 237 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 P I +L+ + D K+L+ G TL+GPHR DL K Sbjct: 238 PTITAALSALYAKQQD-----------KELYQG--------TTLVGPHRDDLHFQVNGKN 278 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + GS G+Q+ + + LA L+ TG P+LLLD++ + LD+ ++ L + D Sbjct: 279 VQ-TFGSQGQQRTTALSVKLAEIDLMKEETGEYPVLLLDDVLSELDDARQTHLLTAIQD- 336 Query: 342 GSQIFMTGTDKS 353 Q F+T T S Sbjct: 337 KVQTFITTTSLS 348 >gi|313894734|ref|ZP_07828295.1| DNA replication and repair protein RecF [Selenomonas sp. oral taxon 137 str. F0430] gi|312976643|gb|EFR42097.1| DNA replication and repair protein RecF [Selenomonas sp. oral taxon 137 str. F0430] Length = 373 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 106/368 (28%), Positives = 166/368 (45%), Gaps = 31/368 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +RNY L L FD IF+G N GKTNI+EA+ + S GR R S A++ Sbjct: 1 MRITRLELHSYRNYEILDLRFDPGVQIFLGANAQGKTNIIEALYYASFGRSHRTTSDAEL 60 Query: 65 TRIGSPS--FFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R+G + +F R V G ++S E R R L+ + + + EL L Sbjct: 61 IRMGESAGRIDLSFLRHDVPG-----ELSFTFERGHRR--RILRAGEPLRQ--RELVGLL 111 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGY 177 + P + G RRR+LD + P + ++ + ++R R +L E Sbjct: 112 PMVLFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAILKDIRERL 171 Query: 178 FDSSWCSSIEAQMAELGVKI---NIARVEMINALSSLIM-------EYVQKENFPHIKLS 227 + Q+A +I IA E + ALS + E H+ Sbjct: 172 VPVDALEPWDVQLARSAARIVTRRIAAAERLGALSGRVQAVLAAGEELTISYEIAHVPDD 231 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 L G DG D+ L+ Y K L + R D T +GPH DL++ ++ ++G Sbjct: 232 LPGEKDGMADR----LEVWYNKALSEFRFRDIARGSTGVGPHLDDLVLSVGGMSLR-SYG 286 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S G+Q+ + + LA + ++ G APILLLD++ + LD D+R AL + Q F+ Sbjct: 287 SQGQQRTGALALKLAELFYLRDSVGEAPILLLDDVMSELDADRRAALLSFIRSEHIQTFI 346 Query: 348 TGTDKSVF 355 T TD + F Sbjct: 347 TATDAAYF 354 >gi|302872926|ref|YP_003841559.1| DNA replication and repair protein RecF [Clostridium cellulovorans 743B] gi|307687879|ref|ZP_07630325.1| recombination protein F [Clostridium cellulovorans 743B] gi|302575783|gb|ADL49795.1| DNA replication and repair protein RecF [Clostridium cellulovorans 743B] Length = 364 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 88/368 (23%), Positives = 171/368 (46%), Gaps = 28/368 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + FRNY L + + +F GDN GKTN+LEAI + S G+ R ++ Sbjct: 3 IENLKLRNFRNYKELNIDLYSGVNVFTGDNAQGKTNVLEAIYYCSLGKSHRTNKDKELI- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---------RCLQINDVVIRVVDELN 117 + + G ++++ +TR ++ + + + IN + ++ + EL Sbjct: 62 -----------LWDALSGQLEVTVN-KTRLNKKIKIDILKEGKKAISINSIKLKKISELI 109 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 + P +I RR+FLD + ++ ++ ++ + +++ RN +L Sbjct: 110 GICNVVMFSPEDLKIVKDSPSYRRKFLDIELCKLNSKYYFNLVQYNKVLNERNVVLKSNN 169 Query: 178 FDS-SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 ++ + Q+A+ G I RV+ IN L+ E + K+S + D K Sbjct: 170 GNNLDIIEVYDMQLAKFGSHIVKDRVDYINKLNRYGQEIHKDITVSKEKISFSYITDAK- 228 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + ++ E L R+ D + + T +GPHR D ++ D T ++GS G+Q+ + Sbjct: 229 --NLNGIEVELINLLKKNRQRDFIKKSTTVGPHRDDFSIEIND-IDTRSYGSQGQQRTSI 285 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + I A ++I G PILLLD++ + LD +++ + + D+ + I TG ++ + + Sbjct: 286 LTIKFASLKIIKELIGEYPILLLDDVLSELDTNRQKYILNSIKDVQTVITCTGMNE-INN 344 Query: 357 SLNETAKF 364 LN+ K Sbjct: 345 YLNDDYKL 352 >gi|168484319|ref|ZP_02709271.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC1873-00] gi|172042411|gb|EDT50457.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC1873-00] gi|332198850|gb|EGJ12932.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA47368] Length = 365 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSVQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239 ++ Q+ + G ++ R++ I L S + +K++F + +S ++ Q+ Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + L R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISNHQA 372 E I N +A Sbjct: 348 ENLSIFTIQNGKA 360 >gi|168335261|ref|ZP_02693362.1| DNA replication and repair protein RecF [Epulopiscium sp. 'N.t. morphotype B'] Length = 359 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 169/375 (45%), Gaps = 27/375 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L+++ FRNY L L IF GDN GKTN+LEAI + R R S +V + Sbjct: 3 ISTLSLTNFRNYQHLSLSLSKGINIFFGDNAQGKTNVLEAIYLCATARSHRTTSEKEVIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + + L+ I + R + + +N + I + +L L + + Sbjct: 63 WDSENALVNLM-LTKQYSLSTIDFIISKR----YKSVLVNKLPINKLTKLFGVLNVVFFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--FDSSWCS 184 P + +RRRF+D + +D + ++ + ++++ RN L + + + Sbjct: 118 PENLDLIKKSPKDRRRFIDIELCQLDSMYVSQLSSYHKILKQRNCYLKQNVNNINYEFLD 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-----LTGFLDGKFDQS 239 ++ + + KI R E I L++ K H++LS L + D + Sbjct: 178 ILDENLYKYAKKIFYKRSEFIENLNT-------KAAAIHLELSGGKEHLKLIYEPNVDIN 230 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + +L R D ++ T GPHR D+ D ++ + GS G+Q+ ++ I Sbjct: 231 I------FKSRLKFNRDRDIRTKTTNSGPHRDDINFLMNDHSLKL-FGSQGQQRTCILSI 283 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 A +I+ TG PILLLD+I + LD +++ LF+ + ++ + I TG D ++F + N Sbjct: 284 KFAQIDIITEITGETPILLLDDILSELDINRQKYLFKYINNLQTMITCTGVDPNLF-TWN 342 Query: 360 ETAKFMRISNHQALC 374 ++ K + +C Sbjct: 343 DSIKVFIVEKANIIC 357 >gi|152985186|ref|YP_001345399.1| recombination protein F [Pseudomonas aeruginosa PA7] gi|166220723|sp|A6UX64|RECF_PSEA7 RecName: Full=DNA replication and repair protein recF gi|150960344|gb|ABR82369.1| RecF protein [Pseudomonas aeruginosa PA7] Length = 369 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 163/349 (46%), Gaps = 18/349 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I GDNG GKT++LEAI L R FR A V + Sbjct: 6 VSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPVIQY-E 64 Query: 70 PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + + F +V G+A ++ I E + + ++R I+ R +L + L + + P Sbjct: 65 EAACTVFGQVMLANGIASNLGISRERQGEFTIR---IDGQNARSAAQLAETLPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ +R RN L G D + ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 +++ +I+ R I AL + E + + + + LS D D L++ Sbjct: 182 ELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRD-----LQDVL 236 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARL 306 A L ++M T GP R+DL + A I S G+QK+V+ + +A L Sbjct: 237 ASSLLRDQQMG----HTQAGPQRADLRIRLAGHNAAEIL--SRGQQKLVVCALRIAQGHL 290 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 I+ + L+D++ + LDE R AL R++ D+G Q+F+T D + Sbjct: 291 INRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLL 339 >gi|298490844|ref|YP_003721021.1| DNA replication and repair protein RecF ['Nostoc azollae' 0708] gi|298232762|gb|ADI63898.1| DNA replication and repair protein RecF ['Nostoc azollae' 0708] Length = 371 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 175/369 (47%), Gaps = 36/369 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ +FRNY ++ F A TI VG+N GK+N LEA+ L+ R R A D+ R Sbjct: 3 LKTLHLRQFRNYQDQKIEFTAPKTILVGNNAQGKSNFLEAVELLATLRSHRLARDHDLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRISWL 125 G + A +E G++D+++ L RSV IN ++V R +D L + + Sbjct: 63 DGD-AIAQINATLERALGISDLTLTLHRHARRSV---AINSEIVRRQMDFLGVLNAVEF- 117 Query: 126 VPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FD 179 S+D + G RR +LD ++ ++P + + + +++R RN L + Sbjct: 118 -SSLDLELVRGSPENRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAFLKKSQESGVRSQ 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLT 229 S S +AQ+ G ++ I R I L+ + E +Q + P++ L+ Sbjct: 177 ESQLSIWDAQLVTAGTRLIIRRDRAIQRLAPIAAGWHASISGSTEVLQIQYAPNVPLAKN 236 Query: 230 GFLDGKFDQSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + Q+F +++ A +L TL+GPHR ++ + K +GS Sbjct: 237 HA--EEVQQAFLGKIQQRTASELHRS--------TTLVGPHRDEVKLSINQKPAR-QYGS 285 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+Q+ +++ + LA +LI +P+LLLD++ A LD ++N L + + Q +T Sbjct: 286 QGQQRTLVLALKLAELQLIEEVINESPLLLLDDVLAELDPFRQNQLLDAIQE-RFQTLIT 344 Query: 349 GTDKSVFDS 357 T FDS Sbjct: 345 TTHLGAFDS 353 >gi|225377588|ref|ZP_03754809.1| hypothetical protein ROSEINA2194_03238 [Roseburia inulinivorans DSM 16841] gi|225210564|gb|EEG92918.1| hypothetical protein ROSEINA2194_03238 [Roseburia inulinivorans DSM 16841] Length = 363 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/352 (25%), Positives = 163/352 (46%), Gaps = 18/352 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + + FRNY L + FD IF GDN GKTNILEA + + + ++ R Sbjct: 3 IKSIELQNFRNYEDLNISFDEGTNIFYGDNAQGKTNILEAAYLSGTTKSHKCSKDKEMIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + R ++ + I + + +RS + + IN V I+ EL L + + Sbjct: 63 FGEQ---ESHIRTVVVKKEKEYQIDMHLKHNRS-KGIAINKVPIKKASELFGILNMVFFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P I ERRRFLD + +D + + + +++ RN+LL + + ++ Sbjct: 119 PEDLNIIKNGPAERRRFLDSELCQLDKIYLSDLTTYNKILNQRNKLLKDMVYRPDLKDTL 178 Query: 187 ---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+ E G KI R + ++ L+ ++ + I ++G + Q ++ Sbjct: 179 PVWDMQLVETGRKIIRRRKQFVDELNEIVHD---------IHYRISGEKEDLLLQYEPSI 229 Query: 244 KEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++ + +L ++ D T +GPHR DL+ + I GS G+Q+ + + L+ Sbjct: 230 EDIFFEDELSRVKERDMRQCMTSVGPHRDDLLFSIGEVDIR-KFGSQGQQRTSALSLKLS 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 L+ + P+LLLD++ + LD +++N L + D + I TG D+ V Sbjct: 289 EIELVKRSIHDTPVLLLDDVLSELDSNRQNYLLNSIHDTQTLITCTGLDEFV 340 >gi|49086132|gb|AAT51330.1| PA0003 [synthetic construct] Length = 370 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 162/349 (46%), Gaps = 18/349 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I GDNG GKT++LEAI L R FR A V + Sbjct: 6 VSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPVVQY-E 64 Query: 70 PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + + F +V G+A ++ I E + + ++R I+ R +L + L + + P Sbjct: 65 EAACTVFGQVMLANGIASNLGISRERQGEFTIR---IDGQNARSAAQLAETLPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ +R RN L G D + ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 +++ +I+ R I AL + E + + + + LS D D L E Sbjct: 182 ELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRD-----LLEVL 236 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARL 306 A L ++M T GP R+DL + A I S G+QK+V+ + +A L Sbjct: 237 ASSLLRDQQMG----HTQAGPQRADLRIRLAGHNAAEIL--SRGQQKLVVCALRIAQGHL 290 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 I+ + L+D++ + LDE R AL R++ D+G Q+F+T D + Sbjct: 291 INRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLL 339 >gi|257885590|ref|ZP_05665243.1| recombination protein F [Enterococcus faecium 1,231,501] gi|257821446|gb|EEV48576.1| recombination protein F [Enterococcus faecium 1,231,501] Length = 374 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 23/357 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A ++G ++ LE + R +IN + + + + + Sbjct: 61 --IG---WTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLD 233 + + Q+A G K+ AR + + N+L I QKE +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITH--QKE---QLEIEYLTAVD 230 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + ++E++ L +K D T +GPHR DL + ++ +GS G+Q+ Sbjct: 231 SLETHTQEQIQEQFLALLNQNKKKDFFRGTTTVGPHRDDLSF-FINQKNVQTYGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA LI TG PILLLD++ + LD++++ L + + Q F+T T Sbjct: 290 TTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345 >gi|78173107|gb|ABB29470.1| RecF [Streptomyces argillaceus] Length = 373 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 162/361 (44%), Gaps = 27/361 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE ++ R +R D L +R Sbjct: 61 VRMGA---DRAVVRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D+ER++R RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLRQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229 D S + +A +G ++ AR++++ A+ L E + P K S Sbjct: 177 RTMDLSTLDVWDQHLARVGAELLAARLDLVAAVQPLADKAYEQLAPGGGPVALEYKASAP 236 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 G + D L E+ L + RK + TL GPHR D+++ + + S Sbjct: 237 GEAHARED-----LYEQLMGALAEVRKQEIERGVTLAGPHRDDVLLK-LGQLPAKGYASH 290 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLILDDVFAELDSRRRERLAELVAP-GEQVLVTA 348 Query: 350 T 350 Sbjct: 349 A 349 >gi|69246709|ref|ZP_00604077.1| RecF protein [Enterococcus faecium DO] gi|257881315|ref|ZP_05660968.1| recombination protein F [Enterococcus faecium 1,231,502] gi|257890532|ref|ZP_05670185.1| recombination protein F [Enterococcus faecium 1,231,410] gi|257893107|ref|ZP_05672760.1| recombination protein F [Enterococcus faecium 1,231,408] gi|258615267|ref|ZP_05713037.1| recombination protein F [Enterococcus faecium DO] gi|260558230|ref|ZP_05830426.1| RecF protein [Enterococcus faecium C68] gi|261206920|ref|ZP_05921609.1| RecF protein [Enterococcus faecium TC 6] gi|289566503|ref|ZP_06446927.1| DNA replication and repair protein recF [Enterococcus faecium D344SRF] gi|293563254|ref|ZP_06677706.1| DNA replication and repair protein RecF [Enterococcus faecium E1162] gi|293569156|ref|ZP_06680462.1| DNA replication and repair protein RecF [Enterococcus faecium E1071] gi|294616656|ref|ZP_06696427.1| DNA replication and repair protein RecF [Enterococcus faecium E1636] gi|294623762|ref|ZP_06702590.1| DNA replication and repair protein RecF [Enterococcus faecium U0317] gi|314940128|ref|ZP_07847308.1| recombination protein F [Enterococcus faecium TX0133a04] gi|314943041|ref|ZP_07849845.1| recombination protein F [Enterococcus faecium TX0133C] gi|314948159|ref|ZP_07851555.1| recombination protein F [Enterococcus faecium TX0082] gi|314953427|ref|ZP_07856345.1| recombination protein F [Enterococcus faecium TX0133A] gi|314993834|ref|ZP_07859170.1| recombination protein F [Enterococcus faecium TX0133B] gi|314998141|ref|ZP_07863023.1| recombination protein F [Enterococcus faecium TX0133a01] gi|68195123|gb|EAN09582.1| RecF protein [Enterococcus faecium DO] gi|257816973|gb|EEV44301.1| recombination protein F [Enterococcus faecium 1,231,502] gi|257826892|gb|EEV53518.1| recombination protein F [Enterococcus faecium 1,231,410] gi|257829486|gb|EEV56093.1| recombination protein F [Enterococcus faecium 1,231,408] gi|260075404|gb|EEW63710.1| RecF protein [Enterococcus faecium C68] gi|260078548|gb|EEW66250.1| RecF protein [Enterococcus faecium TC 6] gi|289161712|gb|EFD09588.1| DNA replication and repair protein recF [Enterococcus faecium D344SRF] gi|291588125|gb|EFF19967.1| DNA replication and repair protein RecF [Enterococcus faecium E1071] gi|291590476|gb|EFF22214.1| DNA replication and repair protein RecF [Enterococcus faecium E1636] gi|291596716|gb|EFF27939.1| DNA replication and repair protein RecF [Enterococcus faecium U0317] gi|291604793|gb|EFF34275.1| DNA replication and repair protein RecF [Enterococcus faecium E1162] gi|313587853|gb|EFR66698.1| recombination protein F [Enterococcus faecium TX0133a01] gi|313591725|gb|EFR70570.1| recombination protein F [Enterococcus faecium TX0133B] gi|313594530|gb|EFR73375.1| recombination protein F [Enterococcus faecium TX0133A] gi|313598241|gb|EFR77086.1| recombination protein F [Enterococcus faecium TX0133C] gi|313640633|gb|EFS05213.1| recombination protein F [Enterococcus faecium TX0133a04] gi|313645413|gb|EFS09993.1| recombination protein F [Enterococcus faecium TX0082] Length = 374 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 23/357 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A ++G ++ LE + R +IN + + + + + Sbjct: 61 --IG---WTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLD 233 + + Q+A G K+ AR + + N+L I QKE +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITH--QKE---QLEIEYLTAVD 230 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + ++E++ L +K D T +GPHR DL + ++ +GS G+Q+ Sbjct: 231 SLETHTQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSF-FINQKNVQTYGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA LI TG PILLLD++ + LD++++ L + + Q F+T T Sbjct: 290 TTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345 >gi|304437929|ref|ZP_07397875.1| recombination protein F [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369069|gb|EFM22748.1| recombination protein F [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 372 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 101/370 (27%), Positives = 165/370 (44%), Gaps = 32/370 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +R+Y +L L FD IF+G N GKTNI+EA+ + + GR R +S A++ Sbjct: 1 MQITELTLRSYRSYETLHLAFDPGVQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR--- 121 R G+ A I + D R + + LR Sbjct: 61 IRAGADG--------------AHIGLSFRRHDVPGELSFTFARGARRRITYAGESLRQRD 106 Query: 122 ISWLVP----SMDRIF--SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT- 174 + L+P S + +F G RRR+LD + P + ++ + R+++ RN +L Sbjct: 107 LVGLLPMVLFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTRILKQRNAVLKD 166 Query: 175 --EGYFDSSWCSSIEAQMAELGVKI---NIARVEMINALSSLIMEYVQ--KENFPHIKLS 227 E +AQ+A I IA V + ALS+ + + +E +++ Sbjct: 167 IRERLAAPDDLPPWDAQLARSAAYIVTRRIAAVAQLGALSARVQAVLAAGEELTLAYEIA 226 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 G D D +L Y K L +GR D T +GPH DL++ ++ ++G Sbjct: 227 GAGAEDFAEDDMTESLHLWYNKMLCEGRARDIARAATGVGPHLDDLVLRVGGMSLR-SYG 285 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S G+Q+ + + LA + G APILLLD++ + LD D+R AL + Q F+ Sbjct: 286 SQGQQRTGALALKLAELFYLQENIGEAPILLLDDVMSELDADRRRALLDFIRHEHIQTFI 345 Query: 348 TGTDKSVFDS 357 T TD + F + Sbjct: 346 TATDAAYFPA 355 >gi|239630808|ref|ZP_04673839.1| DNA replication and repair protein recF [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527091|gb|EEQ66092.1| DNA replication and repair protein recF [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 371 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 168/357 (47%), Gaps = 23/357 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNYA++ F + + +G N GKTN+LE+I L+ R R + ++ Sbjct: 1 MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G S +LE + +I+ + + + H + Sbjct: 61 IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + P++ + ++ ++ RN L + + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKE----NFPHIKLSLTGFLD 233 + + +A G ++ AR +++ +S + I + + K +F + + + L Sbjct: 176 VYLDVLTDSLAVFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSY-QTQVDPSLR 234 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G +Q + AL E +AK+ R+++ + +L+GP R D++ DK + GS G+Q+ Sbjct: 235 GDSEQVYTALGEMFAKQ--QAREIEQGT--SLVGPQRDDVLFIVNDKDVA-NFGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTT 345 >gi|283797182|ref|ZP_06346335.1| RecF protein [Clostridium sp. M62/1] gi|291075140|gb|EFE12504.1| RecF protein [Clostridium sp. M62/1] gi|295090281|emb|CBK76388.1| DNA replication and repair protein RecF [Clostridium cf. saccharolyticum K10] gi|295115476|emb|CBL36323.1| DNA replication and repair protein RecF [butyrate-producing bacterium SM4/1] Length = 368 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/361 (25%), Positives = 158/361 (43%), Gaps = 28/361 (7%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 N + ++ + + +RNY SL +VFD + GDN GKTN+LEA+ + + R + Sbjct: 6 NNMFVESIELKNYRNYGSLSMVFDPGTNVLYGDNAQGKTNVLEAVYVCATTKSHRGSKDK 65 Query: 63 DVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 ++ R S R + + D+ +K + + IN V IR EL + Sbjct: 66 EIIRFAEDESHIKMNIRKDNVPYRIDMHLK-----KNKTKGIAINGVPIRRASELFGIVN 120 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + + P I ERRRF+D + ++ + ++ + R + RN+LL E F Sbjct: 121 VVFFSPEDLNIIKNGPAERRRFVDLELCQLNRLYVHALVQYNRTLTQRNKLLKELPFKPE 180 Query: 182 WCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 ++ + Q+ G ++ R E L+ +I + I L+G G+ + Sbjct: 181 LLETLDIWDMQLVSFGRELIRYRREFAGELNEMIRD---------IHRQLSG---GREEL 228 Query: 239 SFC----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQK 293 C +E + L GR+ D + TL GPHR DL + + I GS G+Q+ Sbjct: 229 VICYEPNTEEEAFETALKRGREADIRQKTTLSGPHRDDL--SFSVNGVDIRRFGSQGQQR 286 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA L+ P+LLLD++ + LD ++ L + I + I TG D Sbjct: 287 TAALSLKLAEIELVKKIVKDYPVLLLDDVLSELDSGRQQHLLSGIRHIQTIITCTGLDDF 346 Query: 354 V 354 V Sbjct: 347 V 347 >gi|319399911|gb|EFV88157.1| DNA replication and repair protein recF [Staphylococcus epidermidis FRI909] Length = 371 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 29/384 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNSDYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q AE +K+ + R I L +L E + + P +KLS Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNHRETLTLDYVPSLKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 ++ + L EE L D + + L GPHR DL + + +GS G Sbjct: 233 ----NYEANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFN-VNGMDAQTYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346 Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373 D + AK RIS + L Sbjct: 347 SVEGIDHEIMNNAKLYRISQGELL 370 >gi|242243252|ref|ZP_04797697.1| recombination protein F [Staphylococcus epidermidis W23144] gi|242233201|gb|EES35513.1| recombination protein F [Staphylococcus epidermidis W23144] Length = 371 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 29/384 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNSDYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q AE +K+ + R I L +L E + + P +KLS Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNHRETLTLDYVPSLKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 ++ + L EE L D + + L GPHR DL + + +GS G Sbjct: 233 ----NYEANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFN-VNGMDAQTYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346 Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373 D + AK RIS + L Sbjct: 347 SVEGIDHEIMNNAKLYRISQGEIL 370 >gi|320547699|ref|ZP_08041984.1| recombination protein F [Streptococcus equinus ATCC 9812] gi|320447774|gb|EFW88532.1| recombination protein F [Streptococcus equinus ATCC 9812] Length = 364 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 94/366 (25%), Positives = 167/366 (45%), Gaps = 20/366 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY + L F +F+G N GKTN LEAI FLS R R TR Sbjct: 3 IQKIALKNYRNYLNNELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHR-------TR 55 Query: 67 IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F V G + ++ LE R +IN + + + + + Sbjct: 56 LDKELIHFQEKELHVSGNLQRSTGAVPLEIDLSSKGRVTKINHLKQAKLSDYIGVMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L T D + Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNTYLKTAEKVDIDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + ++ Q+A+ G ++ R++ I L + Y + H+K+ + FD+ Sbjct: 176 AVLDEQLADFGSRVMEHRLDFIANLEKEADCYHYTISDGLEHLKIHYLSSV--PFDKK-S 232 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +KE++ K L K D + T GPHR DL ++ + GS G+ + +++ + + Sbjct: 233 DIKEQFLKTLERNHKRDIFKKNTGAGPHRDDL--EFFINDMPANFGSQGQHRSLILSLKM 290 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A LI N TG PILLLD++ + LD ++ L +++ Q F+T T + L++ Sbjct: 291 AEIELIKNVTGDYPILLLDDVMSELDNYRQTELLKMIIAKNVQTFITTTS---LEHLSQL 347 Query: 362 AKFMRI 367 K ++I Sbjct: 348 PKELKI 353 >gi|303254888|ref|ZP_07340973.1| recombination protein F [Streptococcus pneumoniae BS455] gi|303259715|ref|ZP_07345691.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP-BS293] gi|303262182|ref|ZP_07348127.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP14-BS292] gi|303264617|ref|ZP_07350536.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS397] gi|303266074|ref|ZP_07351968.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS457] gi|303268482|ref|ZP_07354276.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS458] gi|301802888|emb|CBW35669.1| DNA replication and repair protein RecF [Streptococcus pneumoniae INV200] gi|302598159|gb|EFL65220.1| recombination protein F [Streptococcus pneumoniae BS455] gi|302636822|gb|EFL67312.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP14-BS292] gi|302639267|gb|EFL69726.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP-BS293] gi|302641983|gb|EFL72336.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS458] gi|302644378|gb|EFL74631.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS457] gi|302645987|gb|EFL76215.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS397] Length = 365 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTQTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239 ++ Q+ + G ++ R++ I L S + +K++F + +S ++ Q+ Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + L R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISNHQA 372 E I + +A Sbjct: 348 ENLSIFTIQDGKA 360 >gi|194398177|ref|YP_002038823.1| recombination protein F [Streptococcus pneumoniae G54] gi|226737841|sp|B5E455|RECF_STRP4 RecName: Full=DNA replication and repair protein recF gi|194357844|gb|ACF56292.1| DNA replication and repair protein RecF [Streptococcus pneumoniae G54] Length = 365 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 172/373 (46%), Gaps = 22/373 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L ++ D ++ S Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239 ++ Q+ + G ++ R++ I L S + +K++F + +S ++ Q+ Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + L R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISNHQA 372 E I + +A Sbjct: 348 ENLSIFTIQDGKA 360 >gi|57865928|ref|YP_190091.1| recombination protein F [Staphylococcus epidermidis RP62A] gi|251811367|ref|ZP_04825840.1| recombination protein F [Staphylococcus epidermidis BCM-HMP0060] gi|282874724|ref|ZP_06283603.1| DNA replication and repair protein RecF [Staphylococcus epidermidis SK135] gi|293367577|ref|ZP_06614230.1| recombination protein F [Staphylococcus epidermidis M23864:W2(grey)] gi|73914002|sp|Q5HK02|RECF_STAEQ RecName: Full=DNA replication and repair protein recF gi|57636586|gb|AAW53374.1| DNA replication and repair protein RecF [Staphylococcus epidermidis RP62A] gi|251805116|gb|EES57773.1| recombination protein F [Staphylococcus epidermidis BCM-HMP0060] gi|281296440|gb|EFA88955.1| DNA replication and repair protein RecF [Staphylococcus epidermidis SK135] gi|291318290|gb|EFE58683.1| recombination protein F [Staphylococcus epidermidis M23864:W2(grey)] gi|329724141|gb|EGG60659.1| DNA replication and repair protein RecF [Staphylococcus epidermidis VCU144] gi|329735750|gb|EGG72031.1| DNA replication and repair protein RecF [Staphylococcus epidermidis VCU028] gi|329736171|gb|EGG72444.1| DNA replication and repair protein RecF [Staphylococcus epidermidis VCU045] Length = 371 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 29/384 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FKSDYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q AE +K+ + R I L +L E + + P +KLS Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNDRETLTLDYVPSLKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 ++ + L EE L D + + L GPHR DL + + +GS G Sbjct: 233 ----NYEANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFN-VNGMDAQTYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346 Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373 D + AK RIS + L Sbjct: 347 SVEGIDHEIMNNAKLYRISQGEIL 370 >gi|221232925|ref|YP_002512079.1| DNA replication and repair protein RecF [Streptococcus pneumoniae ATCC 700669] gi|225855720|ref|YP_002737232.1| recombination protein F [Streptococcus pneumoniae JJA] gi|225859998|ref|YP_002741508.1| recombination protein F [Streptococcus pneumoniae 70585] gi|254790490|sp|C1CBK4|RECF_STRP7 RecName: Full=DNA replication and repair protein recF gi|254790491|sp|B8ZQB8|RECF_STRPJ RecName: Full=DNA replication and repair protein recF gi|254790493|sp|C1CHM6|RECF_STRZJ RecName: Full=DNA replication and repair protein recF gi|220675387|emb|CAR69989.1| DNA replication and repair protein RecF [Streptococcus pneumoniae ATCC 700669] gi|225719969|gb|ACO15823.1| DNA replication and repair protein RecF [Streptococcus pneumoniae 70585] gi|225724158|gb|ACO20011.1| DNA replication and repair protein RecF [Streptococcus pneumoniae JJA] Length = 365 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 172/373 (46%), Gaps = 22/373 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L ++ D ++ S Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239 ++ Q+ + G ++ R++ I L S + +K++F + +S ++ Q+ Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + L R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISNHQA 372 E I + +A Sbjct: 348 ENLSIFTIQDGKA 360 >gi|15595201|ref|NP_064723.1| recombination protein F [Pseudomonas aeruginosa PAO1] gi|116053723|ref|YP_788158.1| recombination protein F [Pseudomonas aeruginosa UCBPP-PA14] gi|254243117|ref|ZP_04936439.1| RecF protein [Pseudomonas aeruginosa 2192] gi|296386475|ref|ZP_06875974.1| recombination protein F [Pseudomonas aeruginosa PAb1] gi|313111475|ref|ZP_07797276.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa 39016] gi|13959479|sp|Q9I7C3|RECF_PSEAE RecName: Full=DNA replication and repair protein recF gi|122262142|sp|Q02V78|RECF_PSEAB RecName: Full=DNA replication and repair protein recF gi|9945821|gb|AAG03393.1|AE004440_3 RecF protein [Pseudomonas aeruginosa PAO1] gi|115588944|gb|ABJ14959.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa UCBPP-PA14] gi|126196495|gb|EAZ60558.1| RecF protein [Pseudomonas aeruginosa 2192] gi|310883778|gb|EFQ42372.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa 39016] Length = 369 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 162/349 (46%), Gaps = 18/349 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I GDNG GKT++LEAI L R FR A V + Sbjct: 6 VSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPVIQY-E 64 Query: 70 PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + + F +V G+A ++ I E + + ++R I+ R +L + L + + P Sbjct: 65 EAACTVFGQVMLANGIASNLGISRERQGEFTIR---IDGQNARSAAQLAETLPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ +R RN L G D + ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 +++ +I+ R I AL + E + + + + LS D D L E Sbjct: 182 ELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRD-----LLEVL 236 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARL 306 A L ++M T GP R+DL + A I S G+QK+V+ + +A L Sbjct: 237 ASSLLRDQQMG----HTQAGPQRADLRIRLAGHNAAEIL--SRGQQKLVVCALRIAQGHL 290 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 I+ + L+D++ + LDE R AL R++ D+G Q+F+T D + Sbjct: 291 INRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLL 339 >gi|297582342|ref|YP_003698122.1| DNA replication and repair protein RecF [Bacillus selenitireducens MLS10] gi|297140799|gb|ADH97556.1| DNA replication and repair protein RecF [Bacillus selenitireducens MLS10] Length = 373 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 94/356 (26%), Positives = 166/356 (46%), Gaps = 20/356 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L ++++RNY L L F+ + +F+G+N GKTN++EAI L+ R R A ++ Sbjct: 1 MHINELKLTDYRNYTKLHLTFENRVNVFLGENAQGKTNVMEAIYVLAMARSHRTAKDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P FARVEG + ++KLE + +++N + + + + I Sbjct: 61 IRWDQP-----FARVEGAVTNRNGAMKLEMIFSGRGKKVKLNALERKRLSDYIGACTIVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GYFD 179 P + G RRRFLD + I + + + +L++ RN L + FD Sbjct: 116 FAPEDLALVKGSPQIRRRFLDMEMGQIFTIYLYYLSQYYKLLKQRNTWLKQLQQKSSSFD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMIN---ALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + Q+ E G ++ R +N A ++ I + ++ + L + Sbjct: 176 EGMWHVLTEQLVEAGAEVIQRRFSFLNKLEAWATPIHSAISRDK-ETLTLHYESTVKADD 234 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + S +K+ + ++ + M+ RR T+IGPHR D+ D+ + +GS G+Q+ Sbjct: 235 EMSVDVIKQVFFEQF--QQVMEQEIRRGTTIIGPHRDDVAFFVNDRNVQ-TYGSQGQQRT 291 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA LI TG PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 292 AALSVKLAEIELIHEKTGEYPILLLDDVLSELDDHRQTHLLNSIQG-KVQTFVTTT 346 >gi|107098997|ref|ZP_01362915.1| hypothetical protein PaerPA_01000003 [Pseudomonas aeruginosa PACS2] gi|218888749|ref|YP_002437613.1| recombination protein F [Pseudomonas aeruginosa LESB58] gi|254237754|ref|ZP_04931077.1| RecF protein [Pseudomonas aeruginosa C3719] gi|226737820|sp|B7V0N8|RECF_PSEA8 RecName: Full=DNA replication and repair protein recF gi|126169685|gb|EAZ55196.1| RecF protein [Pseudomonas aeruginosa C3719] gi|218768972|emb|CAW24730.1| RecF protein [Pseudomonas aeruginosa LESB58] Length = 369 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 162/349 (46%), Gaps = 18/349 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I GDNG GKT++LEAI L R FR A V + Sbjct: 6 VSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPVIQY-E 64 Query: 70 PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + + F +V G+A ++ I E + + ++R I+ R +L + L + + P Sbjct: 65 EAACTVFGQVMLANGIASNLGISRERQGEFTIR---IDGQNARSAAQLAETLPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ +R RN L G D + ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 +++ +I+ R I AL + E + + + + LS D D L E Sbjct: 182 ELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRD-----LLEVL 236 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARL 306 A L ++M T GP R+DL + A I S G+QK+V+ + +A L Sbjct: 237 ASSLLRDQQMG----HTQAGPQRADLRIRLSGHNAAEIL--SRGQQKLVVCALRIAQGHL 290 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 I+ + L+D++ + LDE R AL R++ D+G Q+F+T D + Sbjct: 291 INRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLL 339 >gi|226309591|ref|YP_002769485.1| DNA replication and repair protein F [Brevibacillus brevis NBRC 100599] gi|254790466|sp|C0ZH40|RECF_BREBN RecName: Full=DNA replication and repair protein recF gi|226092539|dbj|BAH40981.1| DNA replication and repair protein F [Brevibacillus brevis NBRC 100599] Length = 372 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 174/381 (45%), Gaps = 45/381 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+++ +RNY ++ L FD +F+G+N GKTN LE+I L+ + R D Sbjct: 3 LKNLSLTNYRNYETMSLSFDGPIQLFIGNNAQGKTNALESIYVLALAKSHRTPR--DKEL 60 Query: 67 IGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 I + ++T + V G + ++L T+ R+ +IN + + + L + Sbjct: 61 ISWDADYATIRSDVLRRYGSVRLELQLTTKGKRA----KINGMEQQKLSAYVGALNVVMF 116 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I G +RRRF+D + + P + + ++ +++ RN+LL + S +S Sbjct: 117 APEDLSIVKGAPAQRRRFIDMEIGQVSPTYLYYLSNYNKVLAQRNQLLKDLAMKKS--NS 174 Query: 186 IE------AQMAELGVKINIARVEMINALSS---------------LIMEYVQKENFPHI 224 +E Q+A+L VK+ R E I L + L + YV N + Sbjct: 175 LEMLAIWNTQLADLAVKLLRKRFEFIRKLETWAQEIHTGITDGRERLSLHYV---NSSPV 231 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 +T +D D+ A +E +++ G TLIGPHR D + + + Sbjct: 232 TEEMT--IDQAVDKMLAAYEEVRDREIMRG--------STLIGPHRDDFSLKVNNMDVQ- 280 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGS 343 +GS G+Q+ + I LA LI G P+LLLD++ + LDE ++ L + D + + Sbjct: 281 TYGSQGQQRTSALSIKLAEIELIKEEVGEYPVLLLDDVLSELDEHRQTLLLETIQDRVQT 340 Query: 344 QIFMTGTDKSVFDSLNETAKF 364 + TG + L + ++F Sbjct: 341 FVSTTGVEGLKHQVLQQASRF 361 >gi|182685163|ref|YP_001836910.1| recombination protein F [Streptococcus pneumoniae CGSP14] gi|226737843|sp|B2INP4|RECF_STRPS RecName: Full=DNA replication and repair protein recF gi|182630497|gb|ACB91445.1| recombination protein F [Streptococcus pneumoniae CGSP14] Length = 365 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTQTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239 ++ Q+ + G ++ R++ I L S + +K++F + +S ++ Q+ Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQPSVNITDKQN 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + L R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISNHQA 372 E I + +A Sbjct: 348 ENLSIFTIQDGKA 360 >gi|322375204|ref|ZP_08049718.1| DNA replication and repair protein RecF [Streptococcus sp. C300] gi|321280704|gb|EFX57743.1| DNA replication and repair protein RecF [Streptococcus sp. C300] Length = 365 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 22/370 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 3 LQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + G+ SI LE R ++N + + + H+ + Sbjct: 63 FDNEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALK 244 ++ Q+ E G ++ R++ I L ++ QK+ H+++S L + S Sbjct: 178 LDDQLIEYGCRVIKHRIKFIKDLE----KFGQKK---HLEISNKLEELSISYQSSVNFTN 230 Query: 245 EEYAKKLF-----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 EE F R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 231 EEQLTSSFKIALDKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISN 369 E I N Sbjct: 348 ENLSIFNIQN 357 >gi|15904073|ref|NP_359623.1| recombination protein F [Streptococcus pneumoniae R6] gi|116516540|ref|YP_817437.1| recombination protein F [Streptococcus pneumoniae D39] gi|225857795|ref|YP_002739306.1| recombination protein F [Streptococcus pneumoniae P1031] gi|225862043|ref|YP_002743552.1| recombination protein F [Streptococcus pneumoniae Taiwan19F-14] gi|298229429|ref|ZP_06963110.1| recombination protein F [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255953|ref|ZP_06979539.1| recombination protein F [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501743|ref|YP_003723683.1| recombination protein F [Streptococcus pneumoniae TCH8431/19A] gi|51316461|sp|Q8DMX3|RECF_STRR6 RecName: Full=DNA replication and repair protein recF gi|122277717|sp|Q04HV1|RECF_STRP2 RecName: Full=DNA replication and repair protein recF gi|254790494|sp|C1CNK0|RECF_STRZP RecName: Full=DNA replication and repair protein recF gi|254790495|sp|C1CUE4|RECF_STRZT RecName: Full=DNA replication and repair protein recF gi|15459739|gb|AAL00834.1| Recombination protein RecF [Streptococcus pneumoniae R6] gi|116077116|gb|ABJ54836.1| recF protein [Streptococcus pneumoniae D39] gi|225725404|gb|ACO21256.1| DNA replication and repair protein RecF [Streptococcus pneumoniae P1031] gi|225727340|gb|ACO23191.1| DNA replication and repair protein RecF [Streptococcus pneumoniae Taiwan19F-14] gi|298237338|gb|ADI68469.1| recombination protein F [Streptococcus pneumoniae TCH8431/19A] gi|327388971|gb|EGE87319.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA04375] Length = 365 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239 ++ Q+ + G ++ R++ I L S + +K++F + +S ++ Q+ Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + L R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISNHQA 372 E I + +A Sbjct: 348 ENLSIFTIQDGKA 360 >gi|225181145|ref|ZP_03734591.1| DNA replication and repair protein RecF [Dethiobacter alkaliphilus AHT 1] gi|225168114|gb|EEG76919.1| DNA replication and repair protein RecF [Dethiobacter alkaliphilus AHT 1] Length = 369 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/373 (23%), Positives = 172/373 (46%), Gaps = 20/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + + +RNY+SL L + + G N GKTN+LE+++F++ GR FR + ++ Sbjct: 1 MRLETIELRNYRNYSSLSLELNPNINLLFGSNAQGKTNLLESVAFIAAGRSFRTRNEGEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + ++ ARV G + + + + +N + + + + + + Sbjct: 61 ILWGENNCTAS-ARVCNRMGRETLKVSFDAGSRNKI--FSVNGLTMNRSNYAGRLVTV-L 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSS 181 P I G RR+F D + I P + + ++++R RN LL + S Sbjct: 117 FTPEDLSIVKGSPAVRRKFFDDEISKISPVYEYELGRLQQIIRQRNNLLKKFRQKVLGSQ 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----PHIKLSLTGFL---DG 234 +S Q+A L KI I RV I + ++ + N +++ FL DG Sbjct: 177 ELASWNEQLAILSAKILIKRVTAIRRIG--LLARLSHRNLTGRDESLEILYQSFLPLDDG 234 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 D +++ L + + ++ +TL+GPHR D++ + + + + S G+Q+ Sbjct: 235 ILDAQ--VIQDALLAGLEEKKHEEARLGQTLLGPHRDDIVFNINGRNARL-YASQGQQRT 291 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 +++ + LA I TG P+LL D++ + LDE +R L + D Q F+TGT+ Sbjct: 292 LVLALKLAELEFIKGETGEYPVLLFDDVFSELDERRRRLLVETI-DGRIQTFITGTEAEK 350 Query: 355 FDSLNETAKFMRI 367 E+ K ++ Sbjct: 351 LRQFKESGKMFKV 363 >gi|323487684|ref|ZP_08092942.1| hypothetical protein GPDM_00015 [Planococcus donghaensis MPA1U2] gi|323398418|gb|EGA91206.1| hypothetical protein GPDM_00015 [Planococcus donghaensis MPA1U2] Length = 370 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 97/363 (26%), Positives = 169/363 (46%), Gaps = 35/363 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +RNY SL L F + +F+G+N GKTN++E++ LS + R ++ ++ Sbjct: 1 MRIDRLELVNYRNYESLELEFSPEINVFIGENAQGKTNVMESLYVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + A V G + I L + ++ ++N + R + + L + Sbjct: 61 IRWDA-DYGKIKADVFRKYGKLPLEITLSKKGKKA----KVNHLEQRRLSDYIGQLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180 P + G RRRF+D + I P + ++++++L++ RN +L + Y + Sbjct: 116 FAPEDLHLVKGSPQVRRRFIDMEIGQISPVYLHDLVNYQKLLKQRNHILKQHYGKQTIND 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGF--LDGKFD 237 Q E VKI R + ME +QK P H +S G L ++ Sbjct: 176 VMFEVYTEQFIEAAVKIIRKRYQF--------MELLQKWAEPIHHGIS-RGLEQLQIRY- 225 Query: 238 QSFCALKEEYA---------KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 Q LK E+ +KL + RK + TL+GPHR +L + + +GS Sbjct: 226 QPISGLKPEWTPEEMASFLEQKLIEVRKREIERGVTLVGPHRDELQF-FVNGYDVQTYGS 284 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFM 347 G+Q+ + + LA LI G AP+LLLD++ + LD+ +++ L + GS Q F+ Sbjct: 285 QGQQRTTALSLKLAEIELIKQEVGEAPVLLLDDVLSELDDYRQSHLLNTIK--GSVQTFV 342 Query: 348 TGT 350 T T Sbjct: 343 TTT 345 >gi|306834588|ref|ZP_07467701.1| recombination protein F [Streptococcus bovis ATCC 700338] gi|304423390|gb|EFM26543.1| recombination protein F [Streptococcus bovis ATCC 700338] Length = 364 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/347 (23%), Positives = 159/347 (45%), Gaps = 13/347 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY + L F +F+G N GKTN LEAI FLS R R + ++ Sbjct: 3 IQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + ++ G + I L ++ R ++N + + + + + Sbjct: 63 FDAKELLVS-GILQRSSGTVPLDISLSSKG----RVTKVNHLKQAKLSDYIGVMTVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L T D+ + + Sbjct: 118 PEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQRNTYLKTAEKVDTDFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+A+ G ++ R++ I+ L Y H+ + +L Q + Sbjct: 178 LDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGIEHLSIH---YLSSVSFQEKDDI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K + K L ++ D + T +GPHR DL ++ + GS G+ + +++ + +A Sbjct: 235 KPNFLKALQKNQQRDIFKKNTSVGPHRDDL--EFFINDMPANFGSQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LI TG PILLLD++ + LD ++ L +++ D Q F+T T Sbjct: 293 IELIRTVTGDYPILLLDDVMSELDNYRQTELLKMIIDKNVQTFITTT 339 >gi|15902031|ref|NP_346635.1| recombination protein F [Streptococcus pneumoniae TIGR4] gi|111658642|ref|ZP_01409292.1| hypothetical protein SpneT_02000232 [Streptococcus pneumoniae TIGR4] gi|148984530|ref|ZP_01817818.1| recombination protein F [Streptococcus pneumoniae SP3-BS71] gi|148988871|ref|ZP_01820286.1| recombination protein F [Streptococcus pneumoniae SP6-BS73] gi|149003094|ref|ZP_01828003.1| recombination protein F [Streptococcus pneumoniae SP14-BS69] gi|149007732|ref|ZP_01831341.1| recombination protein F [Streptococcus pneumoniae SP18-BS74] gi|149020146|ref|ZP_01835120.1| recombination protein F [Streptococcus pneumoniae SP23-BS72] gi|168491759|ref|ZP_02715902.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC0288-04] gi|168494012|ref|ZP_02718155.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC3059-06] gi|169832646|ref|YP_001695579.1| recombination protein F [Streptococcus pneumoniae Hungary19A-6] gi|237651040|ref|ZP_04525292.1| recombination protein F [Streptococcus pneumoniae CCRI 1974] gi|237821153|ref|ZP_04596998.1| recombination protein F [Streptococcus pneumoniae CCRI 1974M2] gi|307128490|ref|YP_003880521.1| DNA replication and repair protein RecF [Streptococcus pneumoniae 670-6B] gi|20978636|sp|Q97N44|RECF_STRPN RecName: Full=DNA replication and repair protein recF gi|226737842|sp|B1IAD9|RECF_STRPI RecName: Full=DNA replication and repair protein recF gi|14973738|gb|AAK76275.1| DNA replication and repair protein RecF [Streptococcus pneumoniae TIGR4] gi|147758835|gb|EDK65831.1| recombination protein F [Streptococcus pneumoniae SP14-BS69] gi|147760727|gb|EDK67699.1| recombination protein F [Streptococcus pneumoniae SP18-BS74] gi|147923307|gb|EDK74421.1| recombination protein F [Streptococcus pneumoniae SP3-BS71] gi|147925682|gb|EDK76758.1| recombination protein F [Streptococcus pneumoniae SP6-BS73] gi|147930824|gb|EDK81805.1| recombination protein F [Streptococcus pneumoniae SP23-BS72] gi|168995148|gb|ACA35760.1| DNA replication and repair protein RecF [Streptococcus pneumoniae Hungary19A-6] gi|183573999|gb|EDT94527.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC0288-04] gi|183575893|gb|EDT96421.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC3059-06] gi|301795136|emb|CBW37609.1| DNA replication and repair protein RecF [Streptococcus pneumoniae INV104] gi|301800959|emb|CBW33621.1| DNA replication and repair protein RecF [Streptococcus pneumoniae OXC141] gi|306485552|gb|ADM92421.1| DNA replication and repair protein RecF [Streptococcus pneumoniae 670-6B] gi|332077793|gb|EGI88252.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA41301] gi|332199049|gb|EGJ13130.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA47901] Length = 365 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239 ++ Q+ + G ++ R++ I L S + +K++F + +S ++ Q+ Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + L R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISNHQA 372 E I + +A Sbjct: 348 ENLSIFTIQDGKA 360 >gi|199598230|ref|ZP_03211651.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus rhamnosus HN001] gi|199590833|gb|EDY98918.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus rhamnosus HN001] Length = 372 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 166/357 (46%), Gaps = 23/357 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L++ +RNYA + F + + +G+N GKTN+LEAI L+ R R + ++ Sbjct: 1 MKLDHLSLKNYRNYAMVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G + +LE + +I+ + + + H + Sbjct: 61 IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + P++ + ++ ++ RN L + + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLD 233 + + +A G ++ AR +++ +S I + +K F + + + L Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAY-QTQVAADLR 234 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 +Q + AL +AK+ R+++ + +L+GPHR D++ DK + GS G+Q+ Sbjct: 235 QDSEQVYEALGALFAKQ--QSREIEQGT--SLVGPHRDDVLFIVNDKDVA-NFGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAI-QAKVQTFLTTT 345 >gi|294619748|ref|ZP_06699153.1| DNA replication and repair protein RecF [Enterococcus faecium E1679] gi|291594018|gb|EFF25487.1| DNA replication and repair protein RecF [Enterococcus faecium E1679] Length = 374 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 165/357 (46%), Gaps = 23/357 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A ++G ++ LE + R +IN + + + + + Sbjct: 61 --IG---WTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLD 233 + + Q+A G K+ AR + + N+L I QKE +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITH--QKE---QLEIEYLTAVD 230 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + ++E++ L +K D T +GPHR DL + ++ +GS G+Q+ Sbjct: 231 SLETHTQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSF-FINQKNVQTYGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA LI TG PILLLD++ + LD+ ++ L + + Q F+T T Sbjct: 290 TTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDSRQLHLLETI-EGKVQTFLTTT 345 >gi|306834801|ref|ZP_07467865.1| recombination protein F [Corynebacterium accolens ATCC 49726] gi|304569329|gb|EFM44830.1| recombination protein F [Corynebacterium accolens ATCC 49726] Length = 397 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 97/376 (25%), Positives = 172/376 (45%), Gaps = 29/376 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L++ +FR++ L+L T+FVG NG GKTNI+EA+ + + R + + + R Sbjct: 3 IRDLDVRDFRSWPELKLELGPGITLFVGRNGFGKTNIVEAVGYTAHLSSHRVSHDSPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ S + V +G E + IK + QIN +R EL ++ Sbjct: 63 QGAQSARVSLTAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178 P + G RR +LD ++ + PR D++++++ RN LL GY Sbjct: 118 SPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRGYG 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSL 228 DS S++ +AQ+A LG ++ AR+ +++AL I + E+ P H++ Sbjct: 178 DSDGASALSTLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYAGLAPESRPAHVEYKS 237 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 T +D + A+ +L + R+ + +L+GPHR DL++ D+ S Sbjct: 238 T--IDTSDREVLEAV---MLTELANARQREIERGISLVGPHRDDLVLHLGDQPAK-GFAS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G P+L+LD++ A LD +R L + + Sbjct: 292 HGETWSYAIALRLAEFELLREEGGSDPVLILDDVFAELDAKRRTQLVHLAATAEQVLITA 351 Query: 349 GTDKSVFDSLNETAKF 364 D+ + D+L ++ Sbjct: 352 AVDEDLPDNLEPIVRY 367 >gi|148993621|ref|ZP_01823092.1| recombination protein F [Streptococcus pneumoniae SP9-BS68] gi|168489301|ref|ZP_02713500.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP195] gi|147927842|gb|EDK78864.1| recombination protein F [Streptococcus pneumoniae SP9-BS68] gi|183572210|gb|EDT92738.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP195] gi|332071670|gb|EGI82163.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA17570] Length = 365 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239 ++ Q+ + G ++ R++ I L S + +K++F + +S ++ Q+ Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + L R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISNHQA 372 E I + +A Sbjct: 348 ENLSIFTIQDGKA 360 >gi|294630341|ref|ZP_06708901.1| RecF protein [Streptomyces sp. e14] gi|292833674|gb|EFF92023.1| RecF protein [Streptomyces sp. e14] Length = 373 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 101/361 (27%), Positives = 159/361 (44%), Gaps = 27/361 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + D T FVG NG GKTN++EA+ +L+ R A+ A + Sbjct: 1 MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLAALGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE R+ R +R D L +R Sbjct: 61 IRMGA---DRAVIRAQVRQGERQQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229 D S + +A G ++ R+++I AL L E + P K S Sbjct: 177 RSMDMSTLDVWDQHLARAGAELLARRLDLIAALQPLADKAYEQLAPGGGPLALEYKPSAP 236 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 G + D L + L D RK + TL+GPHR DL++ + + S Sbjct: 237 GEAHTRED-----LYAQLTAALADARKQEIERGVTLVGPHRDDLLLK-LGQLPAKGYASH 290 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLILDDVFAELDARRRERLAELVAP-GEQVLVTA 348 Query: 350 T 350 Sbjct: 349 A 349 >gi|313889502|ref|ZP_07823148.1| DNA replication and repair protein RecF [Streptococcus pseudoporcinus SPIN 20026] gi|313122114|gb|EFR45207.1| DNA replication and repair protein RecF [Streptococcus pseudoporcinus SPIN 20026] Length = 364 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 95/377 (25%), Positives = 168/377 (44%), Gaps = 37/377 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L ++ +RNY ++ F +F+G+N GKTN LEAI F++ R R TR Sbjct: 3 LKELTLTNYRNYEQIQTKFVPGLNVFIGNNAQGKTNFLEAIYFIALTRSHR-------TR 55 Query: 67 IGSP--SFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 I F +V G +E + I I LE + R +IN + + + ++++ Sbjct: 56 IDKELIHFLKDDLKVSGKIERTSGI-ISLEIALTKKGRITKINSLKQAKLSDYIGNMKVV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSW 182 P ++ G RR+F+D + I P + + + +++ RN L T +S + Sbjct: 115 LFAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSQYNYVLKQRNTYLKTASSINSDF 174 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241 ++ Q+A+ G ++ R++ I AL E + +F DG D + Sbjct: 175 LDVLDEQLADYGTRVIHQRMQFIEALE----EEAHRHHF--------AISDGLEDLTLSY 222 Query: 242 ----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 ++KE + + L + R+ D + T +GPHR D++ D A S G+ Sbjct: 223 QSSIVLEPKESIKERFIEALQNNRQKDMFKKNTSVGPHRDDILFYINDMNANFA--SQGQ 280 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + +++ + +A L+ TG PILLLD++ + LD ++ L + Q F+T T Sbjct: 281 HRSLILSLKMAEVSLMKELTGENPILLLDDVMSELDNLRQTKLLETIIQEHVQTFITTTS 340 Query: 352 KSVFDSLNETAKFMRIS 368 SL K +S Sbjct: 341 LEHLSSLPPDIKTFYVS 357 >gi|153811990|ref|ZP_01964658.1| hypothetical protein RUMOBE_02383 [Ruminococcus obeum ATCC 29174] gi|149831889|gb|EDM86975.1| hypothetical protein RUMOBE_02383 [Ruminococcus obeum ATCC 29174] Length = 362 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 97/356 (27%), Positives = 164/356 (46%), Gaps = 26/356 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + FRNY L+L FD IF GDN GKTNILE++ + + + ++ R Sbjct: 3 IESIELKNFRNYQDLQLDFDKGTNIFYGDNAQGKTNILESVYICGTTKSHKGSKDKEIIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125 G + + M ++S K++ ++ + + IN + I+ EL + + + Sbjct: 63 FGEEE-----SHIRMMVKKDELSYKIDMHLRKNKAKGVAINGLRIKKARELFGIVNLVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + +D + + + ++ RNRLL + Y + S + Sbjct: 118 SPEDLNIIKNGPGERRRFMDLELCQLDQIYLTDLAGYNHIVNQRNRLLKDLYQNPSLRET 177 Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQS 239 +E QM + G KI R + + L+ +I + I +LTG L+ ++ S Sbjct: 178 LEIWDIQMLQYGKKIIEKRRDFVRDLNDVIQD---------IHRNLTGGEEHLEVIYEPS 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVG 298 E + + L R+ D + T GPHR DL + I I GS G+Q+ + Sbjct: 229 --TESECFEETLKKNRERDMRMKMTSAGPHRDDLC--FMVNGIDIRKFGSQGQQRTAALS 284 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + L+ L+ PILLLD++ + LD +++ L + DI + I TG D V Sbjct: 285 LKLSEIYLVKEKIKDTPILLLDDVLSELDSNRQTYLLDSIHDIQTLITCTGLDDFV 340 >gi|329938635|ref|ZP_08288031.1| DNA recombination and repair protein RecF [Streptomyces griseoaurantiacus M045] gi|329302126|gb|EGG46018.1| DNA recombination and repair protein RecF [Streptomyces griseoaurantiacus M045] Length = 373 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 104/370 (28%), Positives = 166/370 (44%), Gaps = 28/370 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + DA T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYAHVEVPLDAGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE R+ R +R D L +R Sbjct: 61 VRMGA---ERAIVRAQVRQGERQQLLELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP---HIKLSLT 229 D S + +A G ++ R+++I AL L E + P + S Sbjct: 177 RSLDLSTLDVWDQHLARAGAELLARRLDLIAALRPLTDKAYEQLAPGGGPVGLEYRPSAP 236 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 G + D L E+ L + RK + TL+GPHR DL++ + + S Sbjct: 237 GEAHTRED-----LHEQLLAALAEARKQEIERGVTLVGPHRDDLLLK-LGQLPAKGYASH 290 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLVLDDVFAELDVRRRERLAELVAP-GEQVLVTA 348 Query: 350 T-DKSVFDSL 358 D V D L Sbjct: 349 AVDDDVPDVL 358 >gi|260887488|ref|ZP_05898751.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC 35185] gi|330837870|ref|YP_004412450.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC 35185] gi|260862775|gb|EEX77275.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC 35185] gi|329745634|gb|AEB98990.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC 35185] Length = 369 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 169/373 (45%), Gaps = 29/373 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K K L + FRNY L L +F+G+N GKTNI EA+ + + GR R + AD+ Sbjct: 1 MKAKSLRLKCFRNYEELDLSLSPNINVFLGENAQGKTNIAEALYYAAIGRSHRTNADADL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123 +P+ A++ + D+ LE + R R ++ N I+ EL Sbjct: 61 IAWDAPA-----AKIGLLFERLDVENTLEFQFQRGRRRSIRKNGEPIK-TKELFGVFNAV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDS 180 P + G ERRRFLD + P + ++ + R++ RN LL E Sbjct: 115 LFSPEDLFLIKGAPAERRRFLDGEISQASPSYGHELMQYTRILTQRNSLLKKIRERRAGK 174 Query: 181 SWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGK 235 S + Q+A+ I R V+ +N L++L+ + KEN LSL+ L G Sbjct: 175 EMLSLWDEQLAKSAAHIVEKRFLAVKKLNMLANLMQRRISAGKEN-----LSLSYELCGA 229 Query: 236 FDQSFCALKE---EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 ++ C +E Y KKL + +D + T +GP R D+ ++ + + GS G+Q Sbjct: 230 EEEPPCVTEELVPWYNKKLEESLDLDVLRGSTSVGPQRDDIRLE-VNGVNLRSFGSQGQQ 288 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + ++ + L+ + + TG P+LLLD++ + LD +R L + Q +T TD Sbjct: 289 RTGVLALKLSELEFLRSETGEYPVLLLDDVMSELDGTRREKLLDFIGREHIQTLLTATDA 348 Query: 353 SVFDSLNETAKFM 365 + KFM Sbjct: 349 AYLPE-----KFM 356 >gi|161830866|ref|YP_001595903.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 331] gi|215918858|ref|NP_819059.2| DNA replication and repair protein RecF [Coxiella burnetii RSA 493] gi|218511878|sp|Q83FD6|RECF_COXBU RecName: Full=DNA replication and repair protein recF gi|226737785|sp|A9N902|RECF_COXBR RecName: Full=DNA replication and repair protein recF gi|161762733|gb|ABX78375.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 331] gi|206583742|gb|AAO89573.2| DNA replication and repair protein [Coxiella burnetii RSA 493] Length = 357 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 24/349 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +++FRN A + + +Q F G NG GKT+ILE+I +LS GR FR + + + Sbjct: 7 LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 66 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F G + I + +E RD RCL+IN K L + L Sbjct: 67 DRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 R RR+FLD ++F ++P +R ++ RN L + + + Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAAL-KAKLPLGEITHWDKM 181 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 + E G +++ R ++ L + +Q+ +P I G+ E+Y Sbjct: 182 LVEDGERLHQLRQNVVTEFKPLFTQMLQQFLPAYPLIGHYFRGW------------SEKY 229 Query: 248 A--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHA 304 + ++L K D T GP R+D + D A I S G+QK+V + A Sbjct: 230 SLMEQLQINLKQDLQRGYTQAGPQRADFRLTLGDLPAQDIL--SQGQQKLVTYALHFAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 L+ TG +PI L+D++ A LD +KR+ + +V + SQ+F++G D + Sbjct: 288 LLLKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPN 336 >gi|298246029|ref|ZP_06969835.1| DNA replication and repair protein RecF [Ktedonobacter racemifer DSM 44963] gi|297553510|gb|EFH87375.1| DNA replication and repair protein RecF [Ktedonobacter racemifer DSM 44963] Length = 401 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 169/377 (44%), Gaps = 32/377 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + FRNY L L F G+N GKTN+LEA+S L+ F +S +V Sbjct: 3 LTHLTLEYFRNYKHLDLTLGPGLFFFCGENAQGKTNLLEAVSMLATATSFHASSDREVVN 62 Query: 67 IGSPSFFSTF-ARVEGMEGLADISIKL-------ETRDDRSVRC--------------LQ 104 +P + RV E A I I + ++DD S + + Sbjct: 63 WQAPDHVAHLQGRVSRHEDDAQIEISVFDPTPPTFSQDDTSQQTSRGLDLPANTPRKRYK 122 Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 +N V R +D + + +++ P + G ERRRF DR + + P + + ++ + + Sbjct: 123 LNGVPRRTIDIIGQ-MKVVLFAPVDLHLVDGSPEERRRFFDRALCQVSPHYCQALVRYRK 181 Query: 165 LMRGRNRLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 ++ R+ LL + D ++ Q+ +L +I R M+ +++ L Q + Sbjct: 182 VVTQRSALLKRIRDHQEDPRLIDYLDDQLTQLANQIMHERHHMLTSINQLANPLQQAISG 241 Query: 222 PHIKLSLTGFLDGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 +L + D+S ++ Y ++L R+ ++M L+GPHR DL ++ Sbjct: 242 GRERLEIIYRPSFSVDESLSLPEAQKHYQQQLQAIRRKETMQGVCLLGPHRDDL--EFLV 299 Query: 280 KAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 + +++GS G+Q+ + LA + + TG P+LLLD++ + LD +R L + V Sbjct: 300 NGVNMLSYGSRGQQRTAALSTKLAELAFMRSNTGDEPVLLLDDVFSELDAVRRQYLLQEV 359 Query: 339 TDIGSQIFMTGTDKSVF 355 Q+ +T TD F Sbjct: 360 LS-HQQVLLTATDLESF 375 >gi|22538290|ref|NP_689141.1| recombination protein F [Streptococcus agalactiae 2603V/R] gi|25012150|ref|NP_736545.1| recombination protein F [Streptococcus agalactiae NEM316] gi|77413654|ref|ZP_00789839.1| DNA replication and repair protein RecF [Streptococcus agalactiae 515] gi|51316463|sp|Q8DWQ8|RECF_STRA5 RecName: Full=DNA replication and repair protein recF gi|51316464|sp|Q8E2K7|RECF_STRA3 RecName: Full=DNA replication and repair protein recF gi|22535205|gb|AAN01014.1|AE014289_14 recF protein [Streptococcus agalactiae 2603V/R] gi|24413694|emb|CAD47774.1| Unknown [Streptococcus agalactiae NEM316] gi|77160309|gb|EAO71435.1| DNA replication and repair protein RecF [Streptococcus agalactiae 515] Length = 369 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 92/366 (25%), Positives = 166/366 (45%), Gaps = 14/366 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ +RNY ++ F IF+G N GKTN LEAI FL+ R R S ++ Sbjct: 3 IKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 T V G ++ I+L + R ++N + + + + + Sbjct: 63 FKHHDVQIT-GEVIRKSGHLNLDIQLSEKG----RITKVNHLKQAKLSDYIGAMTVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+FLD + I P + + ++ +++ RN L T D ++ + Sbjct: 118 PEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+A+ G ++ R + I AL+ Y+ H+ + ++ D+S ++ Sbjct: 178 LDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFT-DKS--SI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + +L D + T IGPHR D+ D T A S G+Q+ +++ + LA Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFA--SQGQQRSLILSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI T PILLLD++ + LD ++ L + + Q F+T T +L + K Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351 Query: 364 FMRISN 369 +S+ Sbjct: 352 IFNVSD 357 >gi|242372599|ref|ZP_04818173.1| recombination protein F [Staphylococcus epidermidis M23864:W1] gi|242349654|gb|EES41255.1| recombination protein F [Staphylococcus epidermidis M23864:W1] Length = 371 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 97/386 (25%), Positives = 170/386 (44%), Gaps = 33/386 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNSDYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q A+ +K+ + R I L L E + + P +KLS Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLALKYLPSLKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGS 288 +++ L +E L D K + L GPHR DL V+ D I +GS Sbjct: 233 ----DYEKDESELLDEVMTLLNDNLKREKERGVCLYGPHRDDLGFNVNGMDAQI---YGS 285 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T Sbjct: 286 QGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVT 344 Query: 349 GTDKSVFD-SLNETAKFMRISNHQAL 373 T D + AK RIS + L Sbjct: 345 TTSVDGIDHEIMNNAKLYRISQGELL 370 >gi|152994046|ref|YP_001338881.1| recombination protein F [Marinomonas sp. MWYL1] gi|189039628|sp|A6VR67|RECF_MARMS RecName: Full=DNA replication and repair protein recF gi|150834970|gb|ABR68946.1| DNA replication and repair protein RecF [Marinomonas sp. MWYL1] Length = 368 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 97/350 (27%), Positives = 168/350 (48%), Gaps = 19/350 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+IS RN +S+R Q + VG NG GKT++LEAI LS GR FR + + + Sbjct: 6 LDISHVRNLSSVRFEPSPQVNVIVGKNGSGKTSVLEAIHLLSFGRSFRSHKHKTYIQHEN 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + FA++ +G + I + L+ D + ++I + V EL + L + + P Sbjct: 66 DACI-VFAQLHQKQG-SPIRVGLQRHRDGQID-VRIQGQRAQSVIELAERLPVQLINPDA 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 R+ G RR+F+D F D + +++ ++ RN LL G S ++ + + Sbjct: 123 FRLLEGSPSIRRQFIDWGAFHFDKDFIQAWRGWQKALKQRNTLLRRGKISLSLLAAFDQE 182 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFDQSFCALKEEYA 248 + LG ++N +R + L+ +V+ + +LS++ F G Q A+ E Sbjct: 183 LIRLGEQVNQSRKAYVEKLTP---HFVKVLSLLTTELSVSLQFFQGWDAQKNLAMAVEA- 238 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYC--DKAITIAHGSTGEQKVVLVGIFLAHARL 306 GR+ D T GP R+DL V D T+ S G+QK+V+ + +A +L Sbjct: 239 -----GRERDIELGYTHTGPQRADLRVKTATGDALDTL---SRGQQKLVVSALKIAQGQL 290 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + G + L+D++ A LD + R L +++ + SQIF+T + D Sbjct: 291 LID-MGRPLVFLVDDLPAELDANHRQKLCQLLESLNSQIFITSVEPDTTD 339 >gi|270291841|ref|ZP_06198056.1| DNA replication and repair protein RecF [Streptococcus sp. M143] gi|270279369|gb|EFA25211.1| DNA replication and repair protein RecF [Streptococcus sp. M143] Length = 365 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 91/370 (24%), Positives = 167/370 (45%), Gaps = 22/370 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 3 LQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSNQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALK 244 ++ Q+ E G ++ R++ I L + + QK+ H+++S + L + + Sbjct: 178 LDDQLVEYGCRVIKHRIKFIKDLEN----FGQKK---HLEISNQSEELSISYQSTVNFTN 230 Query: 245 EE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 EE + L R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 231 EEVLMDSFKMALEKSRSRDLFKKNTGVGPHRDD--IAFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITKESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISN 369 E I N Sbjct: 348 ENLSIFNIRN 357 >gi|322390514|ref|ZP_08064032.1| recombination protein F [Streptococcus parasanguinis ATCC 903] gi|321142788|gb|EFX38248.1| recombination protein F [Streptococcus parasanguinis ATCC 903] Length = 364 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 166/367 (45%), Gaps = 13/367 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+I FRNY L + F IF+G N GKTNILE+I FL+ R R + D+ Sbjct: 3 LKHLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDLIY 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S F +V G + LE R ++N + + H+ + Sbjct: 63 FESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + + P + + + +++ RN L D+++ Sbjct: 118 PEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFLEV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +++Q+A G ++ R+E I L + E + + LS+ + F + ++E Sbjct: 178 LDSQLASFGSRVIHHRLEFIKKLEAKAKEKHTRLSDNKEALSIQ-YQSTVFSEEGNDIEE 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ L R+ D + T IGPHR DL + + GS G+ + V++ + LA Sbjct: 237 QFLSMLEKNRQKDIFRKTTSIGPHRDDLA--FFINNMNATFGSQGQHRSVVLSLKLAEIE 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+ T PILLLD++ + LD ++ L +++ Q F+T T D L + + + Sbjct: 295 LMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTT---TLDHLKDLLEEL 350 Query: 366 RISNHQA 372 +I QA Sbjct: 351 KIFTVQA 357 >gi|288906437|ref|YP_003431659.1| recombination protein RecF [Streptococcus gallolyticus UCN34] gi|306832474|ref|ZP_07465626.1| recombination protein F [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979499|ref|YP_004289215.1| DNA replication and repair protein recF [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733163|emb|CBI14744.1| recombination protein RecF [Streptococcus gallolyticus UCN34] gi|304425374|gb|EFM28494.1| recombination protein F [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179427|emb|CBZ49471.1| DNA replication and repair protein recF [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 364 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 83/347 (23%), Positives = 158/347 (45%), Gaps = 13/347 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY + L F +F+G N GKTN LEAI FLS R R + ++ Sbjct: 3 IQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + ++ G + I L ++ R ++N + + + + + Sbjct: 63 FDAKELLVS-GILQRSSGTVPLDISLSSKG----RVTKVNHLKQAKLSDYIGVMTVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L T D+ + + Sbjct: 118 PEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQRNTYLKTAEKVDTDFLAV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+A+ G ++ R++ I+ L Y H+ + +L Q + Sbjct: 178 LDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGVEHLSIH---YLSSVSFQEKDDI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K + K L + D + T +GPHR DL ++ + GS G+ + +++ + +A Sbjct: 235 KPNFLKALQKNHQRDIFKKNTSVGPHRDDL--EFFINDMPANFGSQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LI TG PILLLD++ + LD ++ L +++ D Q F+T T Sbjct: 293 IELIKTVTGDYPILLLDDVMSELDNYRQTELLKMIIDKNVQTFITTT 339 >gi|253581084|ref|ZP_04858344.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847620|gb|EES75590.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 361 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 100/352 (28%), Positives = 158/352 (44%), Gaps = 24/352 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + FRNY SL L IF G+N GKTNILEA+ + + + D+ + Sbjct: 3 IESVQLKNFRNYDSLELDLAQGTNIFYGNNAQGKTNILEALYLCGTTKSHKGSRDKDMIQ 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S + + + D+ +K + + IN + IR EL + + + Sbjct: 63 FGKDESHIRMMVKRDELSYRIDMHLK-----KNKAKGVAINGLPIRKASELFGVVNLVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRFLD + +D + + + ++ RN+LL + S + Sbjct: 118 SPEDLNIIKNGPGERRRFLDLELCQLDKIYLTDLASYNHIVNQRNKLLKDLSVQPSLKDT 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQSF 240 ++ QMAE G KI R E I L+ E V+K I +LTG L+ + Sbjct: 178 LDIWDIQMAEYGRKIIDKRSEFIKELN----ETVRK-----IHGNLTGGLEELNVIYEPD 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGI 299 C E+ + R+ D R T GPHR DL V I I +GS G+Q+ + + Sbjct: 229 CT-AEKLESTICANRERDMRMRLTSAGPHRDDLCV--MANGIDIRKYGSQGQQRTAALSL 285 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 L+ ++ P+LLLD++ + LD ++N L ++DI + I TG D Sbjct: 286 KLSEIYIVKRKIKDTPVLLLDDVLSELDSSRQNYLLDSISDIQTLITCTGLD 337 >gi|324991876|gb|EGC23799.1| recombination protein F [Streptococcus sanguinis SK405] gi|324996234|gb|EGC28144.1| recombination protein F [Streptococcus sanguinis SK678] gi|327458500|gb|EGF04850.1| recombination protein F [Streptococcus sanguinis SK1] gi|327471598|gb|EGF17041.1| recombination protein F [Streptococcus sanguinis SK408] gi|327490328|gb|EGF22115.1| recombination protein F [Streptococcus sanguinis SK1058] Length = 364 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 165/372 (44%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEAI FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L Q L Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTIK---YLSSIPLQKIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD +++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRISNHQALC 374 K I Q + Sbjct: 351 KIFTIQQGQIMS 362 >gi|300777028|ref|ZP_07086886.1| recombination protein F [Chryseobacterium gleum ATCC 35910] gi|300502538|gb|EFK33678.1| recombination protein F [Chryseobacterium gleum ATCC 35910] Length = 359 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 108/373 (28%), Positives = 174/373 (46%), Gaps = 38/373 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L++ F+N+ + F Q FVG+NGVGKTNIL+A+ +LS G+ F D+ Sbjct: 3 IKKLSLYNFKNHTEKKFEFSPQINCFVGNNGVGKTNILDALHYLSVGKSF--LGNTDLNN 60 Query: 67 IGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH---LRI 122 I FF+ A ++ + I I T+ + + ++ ND + D L H L Sbjct: 61 IKKEEDFFTIDAEIQNEDSEDIIRI---TQPKEAKKVIKKND---KSYDRLADHIGYLPS 114 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + P + S RR+FLD M+ D + +I +++ ++ RN LL + +W Sbjct: 115 VMISPYDSNLISDSGESRRKFLDSMISQTDSGYLFDLIQYQKTIQQRNALLKYFAKNRTW 174 Query: 183 -CSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 S+E + G KI R E + L+ ++ +NF I ++G GK Sbjct: 175 DKDSLEIYDDPIIRFGTKIFNKRKEFVEQLNPIV------QNFYKI---ISG---GKETV 222 Query: 239 SFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 S L++ + L + + D M T G H+ DL+ + D + GS G+QK Sbjct: 223 SVIYESHLLEDSFENLLKESLEKDRMLTYTSKGIHKDDLLFE-MDHVLIKKIGSQGQQKS 281 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK- 352 L+ + LA L+ T PILLLD+I LD+ + + L +V + QIF+T T + Sbjct: 282 FLISLKLAQMSLVKELTKKTPILLLDDIFDKLDDIRVSQLIELVNRESFGQIFITDTHRE 341 Query: 353 ---SVFDSLNETA 362 SV +NE + Sbjct: 342 RTESVVKKINEES 354 >gi|238915980|ref|YP_002929497.1| DNA replication and repair protein RecF [Eubacterium eligens ATCC 27750] gi|259563364|sp|C4Z176|RECF_EUBE2 RecName: Full=DNA replication and repair protein recF gi|238871340|gb|ACR71050.1| DNA replication and repair protein RecF [Eubacterium eligens ATCC 27750] Length = 363 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 92/378 (24%), Positives = 170/378 (44%), Gaps = 36/378 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + + +FRNY L + F+ I GDN GKTNILE+I S + R + ++ R Sbjct: 3 VESVELKDFRNYEFLDMNFNEHVNIIYGDNAQGKTNILESIYMCSTSKSHRGSKDREIVR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S GM+ D+ +K + + +N + I+ EL + I + Sbjct: 63 FGEDESHIKLNVLKHGMKYRIDMHLK-----KNKTKGIAVNGIPIKKAVELFGIINIVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS---- 181 P I ERRRF+D + +D + ++++ +++ RN+LL + F S Sbjct: 118 SPEDLNIIKNGPSERRRFMDMELSQLDKIYLSNLVNYNKVLNQRNKLLKDIAFSPSEQLM 177 Query: 182 -----WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 W + Q+ + G I R I ++++I + I LTG G Sbjct: 178 QTLDIW----DMQLVKYGSLIIKGRKSFIEKINTIISD---------IHSRLTG---GIE 221 Query: 237 DQSFCALKE----EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + C + + ++ +++ + R+ D + T GPH+ DLI D + +GS G+Q Sbjct: 222 NIKVCYVPDVDVNDFEEEVRNSRQKDIKYKVTGKGPHKDDLIFLINDNDVR-KYGSQGQQ 280 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + L+ L+ P+LLLD++ + LD +++N L + DI + + TG ++ Sbjct: 281 RTAALSLKLSEIELVKLVIKDTPVLLLDDVLSELDSNRQNFLINSIGDIQTIVTCTGLEE 340 Query: 353 SVFDSLNETAKFMRISNH 370 + + +N F H Sbjct: 341 FINNRMNINKIFKVTDGH 358 >gi|319746166|gb|EFV98437.1| recombination protein F [Streptococcus agalactiae ATCC 13813] Length = 355 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 164/364 (45%), Gaps = 14/364 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ +RNY ++ F IF+G N GKTN LEAI FL+ R R S ++ Sbjct: 3 IKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 T V G ++ I+L + R ++N + + + + + Sbjct: 63 FKHHDVQIT-GEVIRKSGHLNLDIQLSEKG----RITKVNHLKQAKLSDYIGAMTVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+FLD + I P + + ++ +++ RN L T D ++ + Sbjct: 118 PEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+A+ G ++ R + I AL+ Y+ H+ + ++ D+S ++ Sbjct: 178 LDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFT-DKS--SI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + +L D + T IGPHR D+ D I GS G+Q+ +++ + LA Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI T PILLLD++ + LD ++ L + + Q F+T T +L + K Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351 Query: 364 FMRI 367 + Sbjct: 352 IFNV 355 >gi|291539809|emb|CBL12920.1| recF protein [Roseburia intestinalis XB6B4] Length = 368 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 164/355 (46%), Gaps = 28/355 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + ++ FRNY +L++ FD I GDN GKTNILEA + + + ++ R Sbjct: 3 IQSIELNNFRNYENLQISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEMIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + T G + D+ +K +RS + + +N + ++ EL L I + Sbjct: 63 FGTNEAHLRTMVLKNGKQYQIDMHLK----HNRS-KGIAVNKIPMKKASELFGILNIVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERR FLD + +D + + ++ +++ RN+LL + + + Sbjct: 118 SPEDLNIIKNGPSERRHFLDAELCQLDKIYLYDLSNYNKILNQRNKLLKDMVYRPELSDT 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + Q+A+ G KI R + + L+ ++ E H ++S G ++ F + Sbjct: 178 LPVWDMQLADTGKKIIRRREKFVKELNEIVHEI-------HYRIS------GGREELFLS 224 Query: 243 LKEEYAKKLFDG-----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + + L + + D +T +GPHR DL+ I GS G+Q+ + Sbjct: 225 YEPSVSADLLEQELERVKPRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSAL 283 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ L+ + P+LLLD++ + LD +++N L + D + I TG D+ Sbjct: 284 SLKLSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDE 338 >gi|227506185|ref|ZP_03936234.1| recombination protein F [Corynebacterium striatum ATCC 6940] gi|227197209|gb|EEI77257.1| recombination protein F [Corynebacterium striatum ATCC 6940] Length = 392 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 102/376 (27%), Positives = 174/376 (46%), Gaps = 30/376 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L++ +FR++ L + T+FVG NG GKTNI+EAI +++ R + A + R Sbjct: 3 IRELDVRDFRSWPELSIELGPGITLFVGRNGYGKTNIVEAIGYVAHLSSHRVSHDAPLVR 62 Query: 67 IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + + ST A +G E A + IK + QIN ++ EL ++ Sbjct: 63 QSAVNARISTTAVNQGRELTAHLLIK-----PHAANQAQINRTRLKSPRELLGVVKSVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178 P + G ERR +LD ++ + PR D++++++ RN LL GY Sbjct: 118 SPEDLAVVRGEPAERRTYLDNIIASRTPRLAGVKADYDKVLKQRNALLKSASSSLRRGYG 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSL 228 DS S++ +AQ+A LG ++ AR+ +++ALS LI + E+ P HI+ Sbjct: 178 DSDGASALATLDVWDAQLARLGAQVIEARLALVDALSELIPSAYAGLAPESRPAHIEYKS 237 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 T + + L E AK R+ + +L+GPHR DL+++ + S Sbjct: 238 TIDVSDREVLEAVMLTELAAK-----RQREIERGISLVGPHRDDLVLNLGTQPAK-GFAS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G PIL+LD++ A LD +R L + + + Sbjct: 292 HGETWSYAISLRLAEFNLLRQ-DGTDPILILDDVFAELDAKRREKLVHLAAEAEQVLITA 350 Query: 349 GTDKSVFDSLNETAKF 364 D+ + +L ++ Sbjct: 351 AVDEDLPGNLEPIVRY 366 >gi|222053120|ref|YP_002535482.1| DNA replication and repair protein RecF [Geobacter sp. FRC-32] gi|254790478|sp|B9M7S3|RECF_GEOSF RecName: Full=DNA replication and repair protein recF gi|221562409|gb|ACM18381.1| DNA replication and repair protein RecF [Geobacter sp. FRC-32] Length = 364 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 92/356 (25%), Positives = 171/356 (48%), Gaps = 27/356 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K+ + + FRN L+ AQH IF G+NG GKTN+LE+I ++ + F+ A +D Sbjct: 1 MKLNKIYLQSFRNLQETMLM-PAQHFNIFYGNNGQGKTNLLESIFIMATMKSFKTARSSD 59 Query: 64 VTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + R G+ S + +G+ +I++ L D + ++++ + +D+ HL + Sbjct: 60 LVRWGAISSLLKGWVERDGV--TREIAVFL----DNQGKKIRVDQKAVTRIDDFFGHLNV 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFD 179 P + GL RR++LDR VF+ D + + ++++ RN LL G FD Sbjct: 114 VVFTPEEVNMVKGLPELRRKYLDRAVFSSDITYLSVYHAYSKILKNRNMLLKRGEKASFD 173 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFD 237 W ++ E G I ++R+ ++AL L+ + ++ N + +S + D Sbjct: 174 -IWTE----KLVEQGKNIILSRLAYLDALRDLLKRFYREISGNEEAVDISYRPY---HMD 225 Query: 238 QSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKV 294 + C + + +A+ L + TL GPHR D V++ + GS G+QK Sbjct: 226 LADCRGDVADAFAEALAKTATEEERRGTTLAGPHRDD--VEFILNGRPLKQFGSQGQQKS 283 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 ++ + +A + PI LLD++S+ LD++++ L + Q+F+T T Sbjct: 284 YVLALKMAETEYLQKKFHSQPIFLLDDLSSELDQERKKNLMEFLKKRDMQVFITTT 339 >gi|148997971|ref|ZP_01825484.1| recombination protein F [Streptococcus pneumoniae SP11-BS70] gi|168576099|ref|ZP_02722004.1| DNA replication and repair protein RecF [Streptococcus pneumoniae MLV-016] gi|307068837|ref|YP_003877803.1| recombinational DNA repair ATPase [Streptococcus pneumoniae AP200] gi|147755981|gb|EDK63024.1| recombination protein F [Streptococcus pneumoniae SP11-BS70] gi|183578126|gb|EDT98654.1| DNA replication and repair protein RecF [Streptococcus pneumoniae MLV-016] gi|306410374|gb|ADM85801.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus pneumoniae AP200] gi|332198641|gb|EGJ12724.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA41317] Length = 365 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 87/373 (23%), Positives = 172/373 (46%), Gaps = 22/373 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L ++ D ++ S Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239 ++ Q+ + G ++ R++ I L S + +K++F + +S ++ Q+ Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + L + D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 234 ---LSESFKIALEKSKSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISNHQA 372 E I + +A Sbjct: 348 ENLSIFTIQDGKA 360 >gi|306820917|ref|ZP_07454537.1| recombination protein F [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551031|gb|EFM39002.1| recombination protein F [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 356 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 96/359 (26%), Positives = 163/359 (45%), Gaps = 34/359 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I +N+ +RNY +L L F + +G NG GKTNI+EA+ FLS + FR +V Sbjct: 1 MQINNINLKNYRNYENLSLDFSENINMIIGQNGQGKTNIVEAVHFLSFAKSFRTNRDKEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S + + ++ ++ I I++ D ++V IN I + +L + + Sbjct: 61 INFGKDSAYIK-SSIQNIDDSYTIDIRISNLDKKAV---NINKNPISKISDLMGIVNVVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P +I S RR F+++ + I P + ++D+ + + +N LL D+ Sbjct: 117 FSPEDTKIVSDTPSFRRGFMNKEISQIKPLYYNILLDYNQTLENKNSLLKTQNPDTIMLD 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENF-----PHIKLSLTGFLDG 234 + Q++ KI R + I +S + E QKEN P+IK Sbjct: 177 IYDEQLSAYMEKIIAYRKDFIKQISVIANETHGKISSQKENLIINYSPNIKYE------- 229 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQK 293 K+E KL + D M R T G H+ D+ + D I GS G++K Sbjct: 230 ---------KKEDIFKLLSSSRADDMIRGTSSKGIHKDDIEIMIGDIDIR-KFGSQGQKK 279 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + L+ LI N P+++LD+I + LD ++R L + +I Q F+T T+K Sbjct: 280 TATIALKLSEIELIYNMKKEYPVVILDDIFSELDINRRKMLIEKLLNI--QTFITTTEK 336 >gi|240145739|ref|ZP_04744340.1| DNA replication and repair protein RecF [Roseburia intestinalis L1-82] gi|257202155|gb|EEV00440.1| DNA replication and repair protein RecF [Roseburia intestinalis L1-82] Length = 368 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 89/355 (25%), Positives = 165/355 (46%), Gaps = 28/355 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + ++ FRNY +L + FD I GDN GKTNILEA + + + ++ R Sbjct: 3 IQSIELNNFRNYENLHISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEMIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + T G + D+ +K +RS + + +N + ++ EL L I + Sbjct: 63 FGTNEAHLRTMVLKNGKQYQIDMHLK----HNRS-KGIAVNKIPMKKASELFGILNIVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERR FLD + +D + + ++ +++ RN+LL + + + Sbjct: 118 SPEDLNIIKNGPSERRHFLDAELCQLDKIYLSDLSNYNKILNQRNKLLKDMVYRPELSDT 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + Q+A+ G KI R + + L+ L+ E H ++S G ++ F + Sbjct: 178 LPVWDMQLADTGKKIIRRREKFVKELNELVHEI-------HYRIS------GGREELFLS 224 Query: 243 LKEEYAKKLFDGR----KMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + + L + K+ + + +T +GPHR DL+ I GS G+Q+ + Sbjct: 225 YEPSVSADLLEQELERVKLRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSAL 283 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ L+ + P+LLLD++ + LD +++N L + D + I TG D+ Sbjct: 284 SLKLSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDE 338 >gi|23014791|ref|ZP_00054591.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Magnetospirillum magnetotacticum MS-1] Length = 174 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 61/149 (40%), Positives = 89/149 (59%), Gaps = 5/149 (3%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + +R ++ L++++FR Y +LRL DA+ + G NG GKTNILEA+SFL PGRG RRA Sbjct: 11 LASRPAVRRLSLADFRCYGTLRLETDARPVVLTGPNGAGKTNILEALSFLVPGRGLRRAG 70 Query: 61 YADVTRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 D+TR G P S ++ A ++G G +I E +R R ++I+ + D L Sbjct: 71 AGDITRHGLPAGSPWAVAASLDGPAGRVEIGTGREAGHER--RSVRIDGKPAKPGD-LAG 127 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRM 147 + WL P+MDR+F + RRRFLDR+ Sbjct: 128 LVSALWLTPAMDRLFIEGASGRRRFLDRL 156 >gi|320531088|ref|ZP_08032117.1| putative recombination protein F [Selenomonas artemidis F0399] gi|320136670|gb|EFW28623.1| putative recombination protein F [Selenomonas artemidis F0399] Length = 373 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 171/382 (44%), Gaps = 31/382 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +RNY L L FD IF+G N GKTNI+EA+ + S GR R S A++ Sbjct: 1 MRITRLELHSYRNYEILDLRFDPGVQIFLGANAQGKTNIIEALYYASFGRSHRTTSDAEL 60 Query: 65 TRIGSPS--FFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R+ + +F R V G ++S E R R L+ + + + EL L Sbjct: 61 IRMEESAGRIDLSFLRHDVPG-----ELSFTFERGHRR--RILRAGEPLRQ--RELVGLL 111 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGY 177 + P + G RRR+LD + P + ++ + ++R R +L E Sbjct: 112 PMVLFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAILKDIRERL 171 Query: 178 FDSSWCSSIEAQMAELGVKI---NIARVEMINALSSLIM-------EYVQKENFPHIKLS 227 + Q+A +I IA E + ALS + E H+ Sbjct: 172 VPVDALEPWDVQLARSAARIVTRRIAAAERLGALSGRVQAVLAAGEELTISYEIAHVPDD 231 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 L G DG D+ L+ Y K L + R D T +GPH DL++ ++ ++G Sbjct: 232 LPGEKDGMADR----LEVWYNKALSEFRFRDIARGSTGVGPHLDDLVLSVGGMSLR-SYG 286 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S G+Q+ + + LA + ++ G APILLLD++ + LD D+R AL + Q F+ Sbjct: 287 SQGQQRTGALALKLAELFYLRDSVGEAPILLLDDVMSELDADRRAALLSFIRSEHIQTFI 346 Query: 348 TGTDKSVFDSLNETAKFMRISN 369 T TD + F + A + +++ Sbjct: 347 TATDAAYFPAEEMGATYRYVTH 368 >gi|293553550|ref|ZP_06674177.1| DNA replication and repair protein RecF [Enterococcus faecium E1039] gi|291602305|gb|EFF32530.1| DNA replication and repair protein RecF [Enterococcus faecium E1039] Length = 374 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 164/357 (45%), Gaps = 23/357 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNTEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A ++G ++ LE + R +IN + + + + + Sbjct: 61 --IG---WTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLD 233 + + Q+A G K+ AR + + N+L I QKE +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITH--QKE---QLEIEYLTAVD 230 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + ++E++ L +K D T +GPHR DL + ++ +GS G+Q+ Sbjct: 231 SLETHTQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSF-FINQKNVQTYGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA LI TG PILLLD++ + LD+ ++ L + + Q F+T T Sbjct: 290 TTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDSRQLHLLETI-EGKVQTFLTTT 345 >gi|148378015|ref|YP_001252556.1| DNA replication and repair protein RecF [Clostridium botulinum A str. ATCC 3502] gi|148287499|emb|CAL81558.1| DNA replication and repair protein [Clostridium botulinum A str. ATCC 3502] Length = 367 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 170/365 (46%), Gaps = 39/365 (10%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D Sbjct: 3 RMYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKD 62 Query: 64 VTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + + + ++ T+ E ++ DI+I + + + +N + I+ + EL +L + Sbjct: 63 LIKWDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNV 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 P RI RR+FLD + I+ + ++ + +++ RN L +W Sbjct: 118 VMFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNW 171 Query: 183 CSSI-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLS 227 + I + Q+++ G I R + ++ L ++I + + K+ NF + Sbjct: 172 NNKINDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY---- 226 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 LT D FD + ++E L RK D T IGPHR D V + T G Sbjct: 227 LTNIKD--FDNA----EKELLIVLKKNRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFG 279 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S G+Q+ ++ + A +I N G P+LLLD++ + LD +++ + + I + I Sbjct: 280 SQGQQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITC 339 Query: 348 TGTDK 352 TG ++ Sbjct: 340 TGIEE 344 >gi|300853236|ref|YP_003778220.1| putative DNA replication and repair protein RecF [Clostridium ljungdahlii DSM 13528] gi|300433351|gb|ADK13118.1| predicted DNA replication and repair protein RecF [Clostridium ljungdahlii DSM 13528] Length = 366 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 159/353 (45%), Gaps = 24/353 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK+L + FRNY L + FD +F+GDN GKTNILE+I + S G+ R ++ Sbjct: 3 IKYLKLINFRNYKELEMEFDKNLNVFIGDNAQGKTNILESIYYCSIGKSPRTNKDKELIN 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + L D I+++ + + + IN + + + EL + Sbjct: 63 WNGKYAYIKAGVYSSSHNLNDKKIEIKIFKE-GKKGININSIRVNKLSELMGIFNVVMFS 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185 P +I RR+FLD + R+ ++ + +++ RN LL + +S Sbjct: 122 PEDLKIIKESPSFRRKFLDIELCKFSKRYYYNLVQYNKVLSERNLLLRKRNNSNSDILDI 181 Query: 186 IEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + Q+++ G I R + IN LS + I +K F ++ S+T LD + Sbjct: 182 YDIQLSKYGAVIIDLRNKYINKLSKMGKIIHEDITSQTEKIEFKYV-TSITD-LDNIENS 239 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLV 297 F L+ R+ D TL GPHR D + I + + GS G+Q+ ++ Sbjct: 240 LFKVLET--------NRQRDIEKGITLYGPHRDDFVTSI--NGINVRNFGSQGQQRTSVL 289 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + A +I TG P+LLLD++ + LD +++ + + +I Q F+TGT Sbjct: 290 TMKFASLEIIKEITGEYPVLLLDDVLSELDANRQKYILNSIDEI--QTFITGT 340 >gi|295398132|ref|ZP_06808181.1| recombination protein F [Aerococcus viridans ATCC 11563] gi|294973651|gb|EFG49429.1| recombination protein F [Aerococcus viridans ATCC 11563] Length = 371 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 92/360 (25%), Positives = 162/360 (45%), Gaps = 29/360 (8%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 N IK+K +FRNY L + F +F+G+N GKT++LEAI +S R R A+ Sbjct: 4 NDIKLK-----DFRNYEDLTVTFSPGVNVFIGENAQGKTSLLEAIYMMSLARSHRTANEK 58 Query: 63 DVTRIGSPSFFSTFARVEG---MEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNK 118 D + FAR+EG D+ + L T+ + + +N R+ D + K Sbjct: 59 DTIH-----WKQDFARIEGSISTRTNPDLPLALTITKSGKRAKVNHLNQN--RMSDYIGK 111 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLT 174 L + P + G RR+F+D + + P++ + + RL++ RN +LL Sbjct: 112 -LNVVLFAPEDLELIKGAPQLRRKFIDMELGQMSPKYLYESVQYNRLLKQRNAYLKQLLY 170 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH----IKLSLTG 230 + D + + Q+A + R+ ++ L S N H + L+ G Sbjct: 171 KETQDQIYLDILTEQLAASATHVIYQRLRFVDQLESWAKPI--HSNISHGLEELTLAYRG 228 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + D + A+ ++ K + + + TL+GPHR DL + + GS G Sbjct: 229 PSELTLDMTEDAIYQQLMTKFKEKKDHEFARGVTLVGPHRDDLTFKVNGRDVQ-KFGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + LA + G PILLLD++ + LD++++ L + + Q F+T T Sbjct: 288 QQRTTVLSMKLAEIECMHEVLGEYPILLLDDVLSELDDERQTHLLKSIQS-KVQTFLTTT 346 >gi|212211672|ref|YP_002302608.1| DNA replication and repair protein [Coxiella burnetii CbuG_Q212] gi|226737783|sp|B6J289|RECF_COXB2 RecName: Full=DNA replication and repair protein recF gi|212010082|gb|ACJ17463.1| DNA replication and repair protein [Coxiella burnetii CbuG_Q212] Length = 357 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 24/349 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +++FRN A + + +Q F G NG GKT+ILE+I +LS GR FR + + + Sbjct: 7 LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 66 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F G + I + +E RD RCL+IN K L + L Sbjct: 67 DRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 R RR+FLD ++F ++P +R ++ RN L + + + Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAAL-KAKLPLGEITHWDKM 181 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 + E G +++ R ++ L + +Q+ +P I G+ E+Y Sbjct: 182 LVEDGERLHQLRQNVVTEFKPLFTQMLQQFLPAYPLIGHYFRGW------------SEKY 229 Query: 248 A--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHA 304 + ++L K D T GP R+D + D A I S G+QK+V + A Sbjct: 230 SLMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL--SQGQQKLVTYALHFAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 L+ TG +PI L+D++ A LD +KR+ + +V + SQ+F++G D + Sbjct: 288 LLLKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPN 336 >gi|223932878|ref|ZP_03624874.1| DNA replication and repair protein RecF [Streptococcus suis 89/1591] gi|330833788|ref|YP_004402613.1| DNA replication and repair protein RecF [Streptococcus suis ST3] gi|223898459|gb|EEF64824.1| DNA replication and repair protein RecF [Streptococcus suis 89/1591] gi|329308011|gb|AEB82427.1| DNA replication and repair protein RecF [Streptococcus suis ST3] Length = 364 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 163/361 (45%), Gaps = 10/361 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNY L + F +F+G+N GKTNILE+I L+ R R + D+ + Sbjct: 6 LELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S + G + I L + R ++N + + H+ + P Sbjct: 66 KE-LSISGLLHRTSGKVPLDIHLTDKG----RVTKVNHLKQAKLSNYIGHMNVVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188 ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S ++ Sbjct: 121 LQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQRNTYLKSTDKIDENFLSVLDQ 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 Q+AE G ++ R++ + L VQ+ + +L++ K L +++ Sbjct: 181 QLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDD-VNLIDKFL 239 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 +L RK D + T +GPHR D V + + +GS G+ + +++ + LA L+ Sbjct: 240 TELERCRKRDLFKKNTGVGPHRDD--VAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMK 297 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 T PILLLD++ + LD +++ L +TD Q F+T T L ++ K I Sbjct: 298 EVTREYPILLLDDVMSELDNNRQIKLLETITDT-IQTFITTTSLDHLHKLPDSLKIFHIE 356 Query: 369 N 369 + Sbjct: 357 S 357 >gi|290959001|ref|YP_003490183.1| DNA replication protein [Streptomyces scabiei 87.22] gi|260648527|emb|CBG71638.1| DNA replication protein [Streptomyces scabiei 87.22] Length = 374 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 163/368 (44%), Gaps = 21/368 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE ++ R +R D L +R Sbjct: 61 VRMGA---DRAVVRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFL 232 D S + +A +G + R++++ A+ L E + P + L Sbjct: 177 RTMDLSTLDVWDQHLARVGADLLAQRLDLVAAIQPLADKAYEQLAPGGGP-VGLEYRPSS 235 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 G + L E+ L + RK + TL+GPHR D+ + + + S GE Sbjct: 236 PGLVGHAREELYEQLTAALTESRKQEIERGVTLVGPHRDDVTLK-LGQLPAKGYASHGES 294 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-D 351 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 295 WSYALALRLASYDLL-RAEGNEPVLILDDVFAELDSRRRERLAELVAP-GEQVLVTAAVD 352 Query: 352 KSVFDSLN 359 V D L Sbjct: 353 DDVPDVLT 360 >gi|332523373|ref|ZP_08399625.1| DNA replication and repair protein RecF [Streptococcus porcinus str. Jelinkova 176] gi|332314637|gb|EGJ27622.1| DNA replication and repair protein RecF [Streptococcus porcinus str. Jelinkova 176] Length = 363 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 84/365 (23%), Positives = 164/365 (44%), Gaps = 13/365 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + +RNY ++ F +F+G+N GKTN LEAI F++ R R + ++ Sbjct: 3 LKELTLINYRNYEQIQTKFVPGLNVFIGNNAQGKTNFLEAIYFIALTRSHRTRTDKELIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + ++E G+ + I L + R +IN + + + ++++ Sbjct: 63 FLKDD-LKVYGKIERTSGVISLEITLTKKG----RITKINSLKQAKLSDYVGNMKVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L T + + Sbjct: 118 PEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSQYNYVLKQRNTYLKTAVSINKDFLDV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+A+ G ++ R++ I AL + + +KLS + + +S + Sbjct: 178 LDEQLADYGTRVIHQRMQFIEALQQEAHRHHFAISDGLEQLKLSYQSSIALEAKES---I 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ + + L R+ D + T +GPHR D++ D A S G+ + +++ + +A Sbjct: 235 RDRFMEALLHNRQKDMFKKNTSVGPHRDDIMFYINDMNANFA--SQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L + Q F+T T SL K Sbjct: 293 VSLMKELTGENPILLLDDVMSELDNLRQTKLLETIIQEHVQTFITTTSLEHLSSLPPDIK 352 Query: 364 FMRIS 368 +S Sbjct: 353 TFYVS 357 >gi|153209959|ref|ZP_01947546.1| DNA replication and repair protein RecF [Coxiella burnetii 'MSU Goat Q177'] gi|212217691|ref|YP_002304478.1| DNA replication and repair protein [Coxiella burnetii CbuK_Q154] gi|226737782|sp|B6J8S5|RECF_COXB1 RecName: Full=DNA replication and repair protein recF gi|120575205|gb|EAX31829.1| DNA replication and repair protein RecF [Coxiella burnetii 'MSU Goat Q177'] gi|212011953|gb|ACJ19333.1| DNA replication and repair protein [Coxiella burnetii CbuK_Q154] Length = 357 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 157/349 (44%), Gaps = 24/349 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +++FRN A + + +Q F G NG GKT+ILE+I +LS GR FR + + + Sbjct: 7 LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 66 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F G + I + +E RD + RCL+IN K L + L Sbjct: 67 DRFLIFITLYNGTQF---IPLGVE-RDCQGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 R RR+FLD ++F ++P +R ++ RN L + + + Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNASL-KAKLPLGEITHWDKM 181 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 + E G +++ R ++ L + +Q+ +P I G+ E+Y Sbjct: 182 LVEDGERLHQLRQNIVTEFKPLFTQMLQQFLPAYPLIGHYFRGW------------SEKY 229 Query: 248 A--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHA 304 + ++L K D T GP R+D + D A I S G+QK+V + A Sbjct: 230 SLMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL--SQGQQKLVTYALHFAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 L+ TG +PI L+D++ A LD +KR+ + +V + SQ+F++G D + Sbjct: 288 LLLKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPN 336 >gi|291536987|emb|CBL10099.1| recF protein [Roseburia intestinalis M50/1] Length = 368 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 163/355 (45%), Gaps = 28/355 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + ++ FRNY +L++ FD I GDN GKTNILEA + + + ++ R Sbjct: 3 IQSIELNNFRNYENLQISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEMIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + T G + D+ +K +RS + + +N + ++ EL L I + Sbjct: 63 FGTNEAHLRTMVLKNGKQYQIDMHLK----HNRS-KGIAVNKIPMKKASELFGILNIVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERR FLD + +D + + ++ +++ RN+LL + + + Sbjct: 118 SPEDLNIIKNGPSERRHFLDAELCQLDKIYLSDLSNYNKILNQRNKLLKDMVYRPELSDT 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + Q+ + G KI R + + L+ L+ E H ++S G ++ F + Sbjct: 178 LPVWDMQLIDTGKKIIRRREQFVKELNELVHEI-------HYRIS------GGREELFLS 224 Query: 243 LKEEYAKKLFDG-----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + + L + + D +T +GPHR DL+ I GS G+Q+ + Sbjct: 225 YEPSVSADLLEQELERVKPRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSAL 283 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ L+ + P+LLLD++ + LD +++N L + D + I TG D+ Sbjct: 284 SLKLSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDE 338 >gi|27466921|ref|NP_763558.1| recombination protein F [Staphylococcus epidermidis ATCC 12228] gi|38258564|sp|Q8CQK5|RECF_STAES RecName: Full=DNA replication and repair protein recF gi|27314463|gb|AAO03600.1|AE016744_3 DNA repair and genetic recombination protein [Staphylococcus epidermidis ATCC 12228] Length = 371 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 94/384 (24%), Positives = 168/384 (43%), Gaps = 29/384 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FKSDYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q E +K+ + R I L +L E + + P +KLS Sbjct: 176 TMLEVLNQQFVEYALKVTLRREHFIKELETLAQPIHAGITNDQETLTLDYVPSLKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 ++ + L EE L D + + L GPHR DL + + +GS G Sbjct: 233 ----NYEANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFN-VNGMDAQTYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346 Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373 D + AK RIS + L Sbjct: 347 SVEGIDHEIMNNAKLYRISQGEIL 370 >gi|327463824|gb|EGF10140.1| recombination protein F [Streptococcus sanguinis SK1057] Length = 364 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/372 (24%), Positives = 164/372 (44%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTENDLLVS-GLLEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L L Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVK---YLSSIPLHQIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYRSSLLSSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD +++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRISNHQALC 374 K I Q L Sbjct: 351 KIFTIQQGQILS 362 >gi|329117358|ref|ZP_08246075.1| DNA replication and repair protein RecF [Streptococcus parauberis NCFD 2020] gi|326907763|gb|EGE54677.1| DNA replication and repair protein RecF [Streptococcus parauberis NCFD 2020] Length = 364 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/365 (24%), Positives = 163/365 (44%), Gaps = 13/365 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L ++ FRNY L + F IF+G+N GKTNILEAI F++ R R S ++ + Sbjct: 3 LKELTLNHFRNYNDLNINFSEGLNIFIGNNAQGKTNILEAIYFIALTRSHRTRSDKELIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F + +EG +I LE R +IN + + E + + Sbjct: 63 -----FSTDRLSIEGKLNRLSGNISLEINLSDKGRITKINSLKQAKLSEYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D + Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHILKQRNAYLKAARTIDFDFLVV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q++ G ++ R++ I L + Q +++ +D Q + Sbjct: 178 LDQQLSYYGSRVIQQRIQFIADLEKEADAHHQAISNELESLQIKYISSIDTSQSQ---LI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E++ ++L R+ D + T IGPHR D +++ + S G+ + +++ I +A Sbjct: 235 QEKFMEQLERNRQRDIFRKNTSIGPHRDD--IEFYINNMNANFASQGQHRSLILSIKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L +T K Sbjct: 293 VSLMKILTGDNPILLLDDVMSELDNTRQTKLIETVIQENVQTFITTTSLEHLSQLPKTLK 352 Query: 364 FMRIS 368 ++ Sbjct: 353 TFHVT 357 >gi|299143459|ref|ZP_07036539.1| DNA replication and repair protein RecF [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517944|gb|EFI41683.1| DNA replication and repair protein RecF [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 361 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 181/377 (48%), Gaps = 26/377 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L +S FRNY L Q + G+N +GKTN+LEAI L+ G+ FR +++ Sbjct: 1 MKILNLELSNFRNYKYLYYNPKGQINVITGENAMGKTNLLEAIYVLTVGKSFRTVKDSEL 60 Query: 65 TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 +I G + + E D++I + ++ S+ +N + + + Sbjct: 61 IQIGGEQTNLKALSINFEYEDYLDVNIYKDKKNKYSINSDDMN------LSQYRRDFSSV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 PS + ERR++LD ++ + + + + +++ RN+LL + + Sbjct: 115 IFSPSDLNMVKFSPSERRKYLDSLILKLSSVYEHNLYRYRKIIFERNKLLKKN-INYDLL 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A+ GVKI R++++ + YV+ + + LS L + + + Sbjct: 174 EVYDFQLAKYGVKILRERLKILKEFEN----YVK---YHFLNLSGGESLKITYLSTIPLM 226 Query: 244 K-EEYAKKLF-----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVL 296 EE +K+F + RK D + T IGPHR D +D+ + ++ +GS GE + V+ Sbjct: 227 SDEEEMEKIFLDSLKNCRKRDLEIKFTTIGPHRDD--IDFKIENLSAKTYGSQGEIRTVV 284 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + L+ +I N +P+LLLD++ + LD+++ + L + ++ + I T ++ F Sbjct: 285 LSLKLSEVDIIKNYQKNSPLLLLDDVFSELDKNRASYLINSLKNMQTFITSTNLNEENFR 344 Query: 357 SLNETAKFMRISNHQAL 373 SLN A F I N Q + Sbjct: 345 SLN--ADFYEIKNGQII 359 >gi|149012798|ref|ZP_01833743.1| recombination protein F [Streptococcus pneumoniae SP19-BS75] gi|147763229|gb|EDK70168.1| recombination protein F [Streptococcus pneumoniae SP19-BS75] Length = 365 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239 ++ Q+ + G ++ R++ I L S + +K++F + +S ++ Q+ Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + L + D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 234 ---LSESFKIALEKSKSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRISNHQA 372 E I + +A Sbjct: 348 ENLSIFTIQDGKA 360 >gi|220930854|ref|YP_002507762.1| DNA replication and repair protein RecF [Halothermothrix orenii H 168] gi|254790480|sp|B8CZN7|RECF_HALOH RecName: Full=DNA replication and repair protein recF gi|219992164|gb|ACL68767.1| DNA replication and repair protein RecF [Halothermothrix orenii H 168] Length = 375 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 100/356 (28%), Positives = 165/356 (46%), Gaps = 17/356 (4%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +FRN + D + +FVG NG GKTN LEA+ + R + ++ R Sbjct: 8 LKDFRNLTENLIKLDNRLNVFVGLNGQGKTNFLEAVYLMGTASSHRTNADRELIRWNQDR 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 V+ E L IS+++ ++ V+ L+INDV V EL +L + P + Sbjct: 68 AVVQLYLVKRDEKLK-ISLEI----NKKVKKLEINDVPQERVSELLGNLNVVLFSPEDLK 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + RR+FLD + + P + + + ++ RN LL E D++ + Sbjct: 123 LVKEGPHFRRKFLDTELSQVKPYYHYLLKKYNHILSQRNNLLKELMTGNKSDTTLLEVWD 182 Query: 188 AQMAELGVKINIARVEMINALSSLI-MEYVQ-KENFPHIKLSLTGFL-DGKFDQSFCALK 244 Q+ E+G KI R+E+I+ L L + + Q + +I LS L D ++ +K Sbjct: 183 EQLVEIGAKIIQNRIEVIDKLKILARLSHRQITDGLENITLSYESSLSDRIEEKELEEIK 242 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + KL + R + TL GP R DL + I +GS G+Q+ + + LA Sbjct: 243 IIFRNKLVNNRNEEITRGYTLAGPQRDDLKITMNGIDIR-KYGSQGQQRTAALSLKLAEL 301 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + G P+LLLD++ + LD +R+ L I+ Q F+T TD F +LNE Sbjct: 302 EFMKSEQGEYPVLLLDDVFSELDNKRRHRLIDIMAH-RVQTFITATD---FFNLNE 353 >gi|296110747|ref|YP_003621128.1| recombination protein F [Leuconostoc kimchii IMSNU 11154] gi|295832278|gb|ADG40159.1| recombination protein F [Leuconostoc kimchii IMSNU 11154] Length = 372 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 169/372 (45%), Gaps = 55/372 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNYA L+L F +F+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MELTSLKLVNYRNYADLKLDFSDGVNVFLGENAQGKTNLLESIYVLALTRSHRTSSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + RV+ +S+ + R+ ++N + + + L + Sbjct: 61 IRWHEKE-ATISGRVKKNISETPLSLHFSNKGKRA----RVNHLEQSKLSQYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180 P + G RRRF+D ++P + + R+++ RN RL + D+ Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKERNAYLKRLQMKQTTDT 175 Query: 181 SWCSSIEAQMAELGVKINIAR---------------VEMINALSSLIMEYVQKENFPH-- 223 + + Q+ ++G ++ +AR E+ N L L + Y +F Sbjct: 176 VFLDVLTEQLVDVGAQVILARQAFTERLQAAAQPIHAEIANQLEQLTLIYQTSVDFESGD 235 Query: 224 ----IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDY 277 +KL+ F+Q ALK++ A+++ G TL+GPHR DL IV+ Sbjct: 236 ELATVKLA--------FEQ---ALKKQQAREIMQG--------STLVGPHRDDLQFIVND 276 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 D AI GS G+Q+ + + LA L+ TG PILLLD++ + LD +++ L Sbjct: 277 NDVAI---FGSQGQQRTTALAVKLAEIDLMQQETGEYPILLLDDVLSELDANRQTHLLLA 333 Query: 338 VTDIGSQIFMTG 349 + D Q F+T Sbjct: 334 IQD-KVQTFITS 344 >gi|153940655|ref|YP_001389373.1| recombination protein F [Clostridium botulinum F str. Langeland] gi|166220705|sp|A7G9B3|RECF_CLOBL RecName: Full=DNA replication and repair protein recF gi|152936551|gb|ABS42049.1| DNA replication and repair protein RecF [Clostridium botulinum F str. Langeland] gi|295317480|gb|ADF97857.1| DNA replication and repair protein RecF [Clostridium botulinum F str. 230613] Length = 364 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 168/362 (46%), Gaps = 39/362 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ + Sbjct: 3 IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + ++ T+ E ++ DI+I + + + +N + I+ + EL +L + Sbjct: 63 WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P RI RR+FLD + I+ + ++ + +++ RN L +W + Sbjct: 118 SPEDLRIIKDYPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171 Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230 I + Q+++ G I R + ++ L ++I + + K+ NF + LT Sbjct: 172 INDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D FD + ++E L RK D T IGPHR D V + T GS G Sbjct: 227 IKD--FDNA----EKELLIVLKKNRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + A +I N G P+LLLD++ + LD +++ + + I + I TG Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339 Query: 351 DK 352 ++ Sbjct: 340 EE 341 >gi|303230615|ref|ZP_07317365.1| putative DNA replication and repair protein RecF [Veillonella atypica ACS-049-V-Sch6] gi|302514670|gb|EFL56662.1| putative DNA replication and repair protein RecF [Veillonella atypica ACS-049-V-Sch6] Length = 366 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 99/364 (27%), Positives = 163/364 (44%), Gaps = 26/364 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY L L + + G NG GKTNILEAI + G+ R +D+ Sbjct: 1 MRINSLQLFQFRNYKDLTLDLQPEIIVLYGTNGAGKTNILEAIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + E E L ++IKL + + +R +ND I EL L Sbjct: 61 LLFNANE-AGIVVNFEKKETLQKVNIKLFRQGPKDIR---LNDTKIS-QKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RRRFLD + + +++ + RL++ RN LL E + Sbjct: 116 FCPEDLQLIKGSPSGRRRFLDMEISQTSATYYHQLLQYNRLLQQRNTLLKEYRGKQNIPL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSF 240 + + Q+A++ I R+E + ++ LI +K LTG L+ ++Q + Sbjct: 176 AEWDVQLADMAAFIVKKRMESLKKINLLIDLMNRK---------LTGGLENLTIGYEQPY 226 Query: 241 ------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 KE + L + D T +GPHR DL + D GS G+Q+ Sbjct: 227 GEEGHMVYTKEAFYDLLQEALPQDRHRMTTSVGPHRDDLRF-FSDAIDLKKFGSQGQQRT 285 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 ++ + L+ I + G P+LLLD++ + LDE +RN L + + Q +T TD Sbjct: 286 AVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDEARRNNLLQFIHK-RIQTVITTTDIHD 344 Query: 355 FDSL 358 F+++ Sbjct: 345 FENM 348 >gi|222153952|ref|YP_002563129.1| recombination protein F [Streptococcus uberis 0140J] gi|254790492|sp|B9DWE6|RECF_STRU0 RecName: Full=DNA replication and repair protein recF gi|222114765|emb|CAR43930.1| DNA replication and repair protein RecF [Streptococcus uberis 0140J] Length = 364 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 92/360 (25%), Positives = 161/360 (44%), Gaps = 39/360 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + FRNY ++ F +F+G+N GKTN LEAI FL+ R R + ++ + Sbjct: 3 IKELQLRNFRNYGTVDTEFSPGLNVFIGNNAQGKTNFLEAIYFLALTRSHRTRTDKELIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + ++ + G + ++L + R +IN + + + + + Sbjct: 63 F-SKNNLQLIGKLNRISGALSLELQLSDKG----RITKINALKQARLSDYIGTMMVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L T +S + S Sbjct: 118 PEDLQLIKGAPSLRRKFIDIDLGQIKPIYLSDLSNYNYVLKQRNTYLKTISTINSDFLSV 177 Query: 186 IEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIKLSLTG 230 ++ Q+A+ G K+ R++ I N L SLI+ Y + S+T Sbjct: 178 LDEQLADYGSKVIKHRIDFIGELTREANKHHEAISNGLESLIITY---------ESSVT- 227 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 Q +KE + L R+ D + T IGPHR D+ D A S G Sbjct: 228 ------QQDHQTIKEAFLLNLQKNRQRDIFKKNTSIGPHRDDIHFFINDMNANFA--SQG 279 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + +++ + +A L+ TG PILLLD++ + LD ++ L V + Q F+T T Sbjct: 280 QHRSLILSLKMAEVSLMKEMTGDNPILLLDDVMSELDNTRQIKLLETVINENVQTFITTT 339 >gi|325686466|gb|EGD28495.1| recombination protein F [Streptococcus sanguinis SK72] Length = 364 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L Q L Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLQKIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD +++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRISNHQALC 374 K I Q + Sbjct: 351 KIFTIQQGQIMS 362 >gi|227549439|ref|ZP_03979488.1| recombination protein F [Corynebacterium lipophiloflavum DSM 44291] gi|227078516|gb|EEI16479.1| recombination protein F [Corynebacterium lipophiloflavum DSM 44291] Length = 394 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 103/392 (26%), Positives = 182/392 (46%), Gaps = 35/392 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FR++ L L + T+F G NG GKTNI+EA+ + S R ++ A + R Sbjct: 3 VRDLDLRDFRSWPELTLTLEQGATVFAGRNGHGKTNIVEALHYTSTLGSHRVSTDAPLIR 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S + S +G E + IK QIN ++ E+ LR Sbjct: 63 SGCSDARVSVTTVNDGRELTTHLLIKAN-----GANQAQINRTRLKSAREVLGVLRTVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178 P ++ +G ERRRFLD + + PR D+++++R RN LL GY Sbjct: 118 SPEDLKLVAGEPAERRRFLDDLATSRAPRLGGAKADYDKVLRQRNALLRSSAHELRRGYG 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIME---YVQKENFPHIKLSLT 229 D + S++ + Q+A LG ++ R+E+++ LS I E V E+ P +S + Sbjct: 178 DDTGASALATLDVWDLQLARLGAEVTAGRLELLDVLSPHIAESYAAVAPESRP-ASVSYS 236 Query: 230 GFLD-------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 +D G+ + ++ +L R+ + TL+GPHR D+++ D Sbjct: 237 STVDDAVRSLAGEPSRDPGVIEAAMLTELARRRREEIERTTTLVGPHRDDMVLMLGDTPA 296 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S GE + + LA L++ + G P+L+LD++ A LD +R L + Sbjct: 297 K-GYASHGETWSYALALHLAEYELLA-SEGSHPVLILDDVFAELDALRRQRLVAVAHSAE 354 Query: 343 SQIFMTGTDKSVFDSLNE--TAKFMRISNHQA 372 + + D+L + +A+++ +S H+A Sbjct: 355 QVLITAAVGDDLPDNLADAVSARYL-VSMHEA 385 >gi|307707884|ref|ZP_07644361.1| DNA replication and repair protein RecF [Streptococcus mitis NCTC 12261] gi|307616144|gb|EFN95340.1| DNA replication and repair protein RecF [Streptococcus mitis NCTC 12261] Length = 365 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/367 (23%), Positives = 163/367 (44%), Gaps = 16/367 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNIFLGRNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP---HIKLSLTGFLDGKFDQSFCA 242 ++ Q+ + G ++ R++ I L + +K++F I+ + Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLE----HFGRKKHFELSNQIEELSISYQSSVKSTEKED 233 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L E + L R D + T +GPHR D + + + + GS G+ + +++ I LA Sbjct: 234 LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSIKLA 291 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 292 EIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENL 350 Query: 363 KFMRISN 369 I + Sbjct: 351 SIFTIQD 357 >gi|154707128|ref|YP_001423442.1| DNA replication and repair protein [Coxiella burnetii Dugway 5J108-111] gi|226737784|sp|A9KEV0|RECF_COXBN RecName: Full=DNA replication and repair protein recF gi|154356414|gb|ABS77876.1| DNA replication and repair protein [Coxiella burnetii Dugway 5J108-111] Length = 357 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 24/349 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +++FRN A + + +Q F G NG GKT+ILE+I +LS GR FR + + + Sbjct: 7 LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 66 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F G + I + +E RD RCL+IN K L + L Sbjct: 67 DRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 R RR+FLD ++F ++P +R ++ RN L + + + Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAAL-KAKLPLGEITHWDKM 181 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 + E G +++ R ++ L + +Q+ +P I G+ E+Y Sbjct: 182 LVEDGERLHQLRQNVVTEFRPLFTQMLQQFLPAYPLIGHYFRGW------------SEKY 229 Query: 248 A--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHA 304 + ++L K D T GP R+D + D A I S G+QK+V + A Sbjct: 230 SLMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL--SQGQQKLVTYALHFAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 L+ TG +PI L+D++ A LD +KR+ + +V + SQ+F++G D + Sbjct: 288 LLLKEKTGISPIYLIDDLPAELDANKRDCVIDLVNYLESQVFISGIDPN 336 >gi|327467748|gb|EGF13242.1| recombination protein F [Streptococcus sanguinis SK330] Length = 364 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 165/372 (44%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L +L Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVK---YLSSIPLHQIDSL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYRSSLLSSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD +++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRISNHQALC 374 K I Q + Sbjct: 351 KIFTIQQGQIIS 362 >gi|165924210|ref|ZP_02220042.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 334] gi|165916344|gb|EDR34948.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 334] Length = 357 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 24/349 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +++FRN A + + +Q F G NG GKT+ILE+I +LS GR FR + + + Sbjct: 7 LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 66 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F G + I + +E RD RCL+IN K L + L Sbjct: 67 DRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 R RR+FLD ++F ++P +R ++ RN L + + + Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNASL-KAKLPLGEITHWDKM 181 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 + E G +++ R ++ L + +Q+ +P I G+ E+Y Sbjct: 182 LVEDGERLHQLRQNVVTEFKPLFTQMLQQFLPAYPLIGHYFRGW------------SEKY 229 Query: 248 A--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHA 304 + ++L K D T GP R+D + D A I S G+QK+V + A Sbjct: 230 SLMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL--SQGQQKLVTYALHFAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 L+ TG +PI L+D++ A LD +KR+ + +V + SQ+F++G D + Sbjct: 288 LLLKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPN 336 >gi|150387857|ref|YP_001317906.1| DNA replication and repair protein RecF [Alkaliphilus metalliredigens QYMF] gi|166918718|sp|A6TJ79|RECF_ALKMQ RecName: Full=DNA replication and repair protein recF gi|149947719|gb|ABR46247.1| DNA replication and repair protein RecF [Alkaliphilus metalliredigens QYMF] Length = 368 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/333 (25%), Positives = 159/333 (47%), Gaps = 11/333 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + FRNY L+L + IFVG+N GKTN+LEA+ + G+ FR + ++ Sbjct: 3 IEGLKLINFRNYEQLQLQLHPKLNIFVGENAQGKTNVLEAVYLSAIGKSFRTSKDQEMIF 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + +V+ + + +I+L D+ + +++N V + + EL +L I Sbjct: 63 VDK---HQAYVQVKVKRVVYENNIELRLNVDKK-KNIKVNQVPLLKLGELLGNLNIVLFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +I ERR+F+D + I P++ + + ++++ RN+LL Sbjct: 119 PEDLKIIKEGPGERRKFIDGEISQIAPKYYYNLNQYNKILQQRNKLLKYHKGKKLDLEVW 178 Query: 187 EAQMAELGVKINIARVEMINALSSL--IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 Q+A +G + I R I ++ L +M + +++ + K + ++ Sbjct: 179 NEQLANIGASLIIYRRNFIKRIAILAKLMHRKITDGIETLEIEYKSSVLIKDHDTVDQIR 238 Query: 245 EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + K+L + D RR TL+GPHR DL + + +GS G+Q+ ++ + LA Sbjct: 239 VGFLKEL--NQSADEERRRGVTLVGPHRDDLNFNINGLEVK-TYGSQGQQRTAVLSLKLA 295 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 LI G P+LLLD++ + LD ++N L Sbjct: 296 ELELIKGEVGEYPVLLLDDVMSELDMKRQNDLI 328 >gi|327438159|dbj|BAK14524.1| recombinational DNA repair ATPase [Solibacillus silvestris StLB046] Length = 372 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 96/381 (25%), Positives = 177/381 (46%), Gaps = 31/381 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L ++ +RNY SL L F + +F+G+N GKTN++E+I L+ + R A+ ++ Sbjct: 1 MNIERLQLTNYRNYESLTLDFSDKINVFIGENAQGKTNVMESIYVLAMAKSHRTANDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + + ++EG+ + +E + + +IN + + + + Sbjct: 61 IR-----WDADYGKIEGVVNKRYGGVPIELTISKKGKKGKINHLEQTKLSNYIGQMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I G RRRF+D + I P + ++ F+++++ RN LL + S S Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKILKQRNHLLKKNMGKQSLAS 175 Query: 185 SI-----EAQMAELGVKINIARVEMINALSSLIMEYVQKENF----PHIKLSLTGFLDGK 235 + Q + ++I R + I L+ ++ + +F KL + Sbjct: 176 DVMFEIYTEQYVQAAIQIIRKRFQFI----ELLQDWAEPIHFGISRGLEKLVIKYRPVTG 231 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGST 289 D S+ A EE A L +K++ + +R TLIGPHR DL D + + +GS Sbjct: 232 MDASWTA--EEMADYL--TKKLEEVKQREIERGVTLIGPHRDDLQFFVNDYDVQV-YGSQ 286 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ + + LA LI T PILLLD++ + LD+ +++ L + Q F+T Sbjct: 287 GQQRTTALSLKLAEIELIKQETKETPILLLDDVLSELDDYRQSHLLNTIQG-EVQTFVTT 345 Query: 350 TD-KSVFDSLNETAKFMRISN 369 T + + + AK R++ Sbjct: 346 TSVEGIHHDTIQHAKLFRVTQ 366 >gi|120552948|ref|YP_957299.1| DNA replication and repair protein RecF [Marinobacter aquaeolei VT8] gi|166220714|sp|A1TWJ3|RECF_MARAV RecName: Full=DNA replication and repair protein recF gi|120322797|gb|ABM17112.1| DNA replication and repair protein RecF [Marinobacter aquaeolei VT8] Length = 373 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 96/355 (27%), Positives = 169/355 (47%), Gaps = 15/355 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L FRN S + F + G NG GKT++LEAI +L GR FR + + V G Sbjct: 6 LQTQHFRNLLSAPVEFSPSFNLLYGANGSGKTSVLEAIGYLGLGRSFRVSRHQAVVAHGQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETR----DDRSVR--CLQINDVVIRVVDELNKHLRIS 123 S + F ++ + S K+E R D S++ L+++ +R + L HL +S Sbjct: 66 -SKLTVFGALDSGLLAQESSEKVEHRIGISRDVSLKETQLRVDGEAVRSLSFLAMHLPVS 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + I +G +RR+FLD +VF ++P +R+ RN++L G D S Sbjct: 125 VIDPGVFDIVAGGPGKRRQFLDWLVFHVEPSFSSLWQQVQRVTSQRNQMLRNGRLDESLM 184 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++Q L ++ R + + + + P ++ F G +D+S AL Sbjct: 185 RVWDSQYGALAESLSDIRETVFQRFKIAFESVLAELDAPWVEGLKMDFYPG-WDRS-TAL 242 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E L + R+ + TL GP+R+D+ + + + + S G+QK +++ + +A Sbjct: 243 TE----VLVNHREQERRMGHTLYGPNRADIRLKFGGRPVAETF-SRGQQKTLVILMKIAQ 297 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 +++S+ G LLD+I+A LD R L R + ++ Q+F+T + D+L Sbjct: 298 GKVLSD-LGKQVTFLLDDINAELDVRHRVMLARNLQELRCQVFITSIEHPEPDTL 351 >gi|311897310|dbj|BAJ29718.1| putative DNA replication and repair protein RecF [Kitasatospora setae KM-6054] Length = 387 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 98/360 (27%), Positives = 173/360 (48%), Gaps = 26/360 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +++ R A+ A + Sbjct: 1 MHVAHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYVATLGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ + V G G A + ++LE ++ R +R D L LR Sbjct: 61 IRLGAERAVIRASVVAGG-GRATL-VELELTAGKANRARLNRSDNVRPRDVLGV-LRTVL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL G Sbjct: 118 FAPEDLALVKGDPGERRRFLDELLTARTPRLAGVRSDYERVLKQRNALLKTAATARRAGG 177 Query: 178 FDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 S+ +++E +A G ++ R++++ AL L+ E ++ P ++ + Sbjct: 178 GKSADLATLEVWDGHLARAGAELTAFRIQLVAALQPLVAE-AYRQLAPDGGDTVLEYRS- 235 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGS 288 F+ +E+ ++L D + S+ R+ TL+GPHR +L++ + S Sbjct: 236 SFEGELPTSREQAERQLLD--ALQSLRRQEIERGLTLVGPHRDELLL-RLGPLPAKGYAS 292 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G P+L+LD++ A LD +R+ L +V G Q+ +T Sbjct: 293 HGESWSYALALRLASYELL-RAEGEEPVLVLDDVFAELDARRRDRLAELVAG-GEQVLVT 350 >gi|15922994|ref|NP_370528.1| recombination protein F [Staphylococcus aureus subsp. aureus Mu50] gi|15925709|ref|NP_373242.1| recombination protein F [Staphylococcus aureus subsp. aureus N315] gi|21281733|ref|NP_644819.1| recombination protein F [Staphylococcus aureus subsp. aureus MW2] gi|49482257|ref|YP_039481.1| recombination protein F [Staphylococcus aureus subsp. aureus MRSA252] gi|49484916|ref|YP_042137.1| recombination protein F [Staphylococcus aureus subsp. aureus MSSA476] gi|57651112|ref|YP_184915.1| recombination protein F [Staphylococcus aureus subsp. aureus COL] gi|88193827|ref|YP_498612.1| recombination protein F [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266451|ref|YP_001245394.1| recombination protein F [Staphylococcus aureus subsp. aureus JH9] gi|150392484|ref|YP_001315159.1| recombination protein F [Staphylococcus aureus subsp. aureus JH1] gi|151220215|ref|YP_001331038.1| recombination protein F [Staphylococcus aureus subsp. aureus str. Newman] gi|156978335|ref|YP_001440594.1| recombination protein F [Staphylococcus aureus subsp. aureus Mu3] gi|161508270|ref|YP_001573929.1| recombination protein F [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141519|ref|ZP_03566012.1| recombination protein F [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316842|ref|ZP_04840055.1| recombination protein F [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733835|ref|ZP_04868000.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH130] gi|254663938|ref|ZP_05143410.1| recombination protein F [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424200|ref|ZP_05600629.1| recombination protein F [Staphylococcus aureus subsp. aureus 55/2053] gi|257426877|ref|ZP_05603279.1| recombination protein F [Staphylococcus aureus subsp. aureus 65-1322] gi|257429513|ref|ZP_05605900.1| recombination protein F [Staphylococcus aureus subsp. aureus 68-397] gi|257432160|ref|ZP_05608523.1| recombination protein F [Staphylococcus aureus subsp. aureus E1410] gi|257435121|ref|ZP_05611172.1| recombination protein F [Staphylococcus aureus subsp. aureus M876] gi|257793542|ref|ZP_05642521.1| recombination protein RecF [Staphylococcus aureus A9781] gi|258411152|ref|ZP_05681431.1| recombination protein RecF [Staphylococcus aureus A9763] gi|258420944|ref|ZP_05683878.1| recombination protein F [Staphylococcus aureus A9719] gi|258438583|ref|ZP_05689806.1| recombination protein F [Staphylococcus aureus A9299] gi|258443961|ref|ZP_05692299.1| recombination protein F [Staphylococcus aureus A8115] gi|258446223|ref|ZP_05694383.1| recombination protein F [Staphylococcus aureus A6300] gi|258449118|ref|ZP_05697224.1| recombination protein RecF [Staphylococcus aureus A6224] gi|258451363|ref|ZP_05699394.1| recombination protein F [Staphylococcus aureus A5948] gi|258454404|ref|ZP_05702372.1| recombination protein F [Staphylococcus aureus A5937] gi|262049436|ref|ZP_06022308.1| DNA replication and repair protein [Staphylococcus aureus D30] gi|262051892|ref|ZP_06024107.1| DNA replication and repair protein [Staphylococcus aureus 930918-3] gi|269201694|ref|YP_003280963.1| recombination protein F [Staphylococcus aureus subsp. aureus ED98] gi|282894283|ref|ZP_06302513.1| DNA replication and repair protein recF [Staphylococcus aureus A8117] gi|282907051|ref|ZP_06314899.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus Btn1260] gi|282910030|ref|ZP_06317838.1| recombination protein RecF [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912278|ref|ZP_06320074.1| recombination protein RecF [Staphylococcus aureus subsp. aureus WBG10049] gi|282912918|ref|ZP_06320710.1| RecF protein [Staphylococcus aureus subsp. aureus M899] gi|282920723|ref|ZP_06328442.1| DNA replication and repair protein recF [Staphylococcus aureus A9765] gi|282922546|ref|ZP_06330236.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus C101] gi|282927754|ref|ZP_06335368.1| DNA replication and repair protein recF [Staphylococcus aureus A10102] gi|283959488|ref|ZP_06376929.1| RecF protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284023041|ref|ZP_06377439.1| recombination protein F [Staphylococcus aureus subsp. aureus 132] gi|293497971|ref|ZP_06665825.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus 58-424] gi|293511561|ref|ZP_06670255.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus M809] gi|293550170|ref|ZP_06672842.1| RecF protein [Staphylococcus aureus subsp. aureus M1015] gi|294849832|ref|ZP_06790572.1| DNA replication and repair protein recF [Staphylococcus aureus A9754] gi|295406868|ref|ZP_06816672.1| DNA replication and repair protein recF [Staphylococcus aureus A8819] gi|295429301|ref|ZP_06821923.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275683|ref|ZP_06858190.1| recombination protein F [Staphylococcus aureus subsp. aureus MR1] gi|297209448|ref|ZP_06925846.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245903|ref|ZP_06929765.1| DNA replication and repair protein recF [Staphylococcus aureus A8796] gi|297589197|ref|ZP_06947838.1| recombination protein F [Staphylococcus aureus subsp. aureus MN8] gi|300911472|ref|ZP_07128921.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH70] gi|304379952|ref|ZP_07362681.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56749543|sp|Q6GD86|RECF_STAAS RecName: Full=DNA replication and repair protein recF gi|56749590|sp|Q6GKU1|RECF_STAAR RecName: Full=DNA replication and repair protein recF gi|56753681|sp|P68861|RECF_STAAM RecName: Full=DNA replication and repair protein recF gi|56753682|sp|P68862|RECF_STAAN RecName: Full=DNA replication and repair protein recF gi|56753685|sp|P68863|RECF_STAAU RecName: Full=DNA replication and repair protein recF gi|56753686|sp|P68864|RECF_STAAW RecName: Full=DNA replication and repair protein recF gi|81695634|sp|Q5HJZ2|RECF_STAAC RecName: Full=DNA replication and repair protein recF gi|122540544|sp|Q2G275|RECF_STAA8 RecName: Full=DNA replication and repair protein recF gi|166221868|sp|A7WWN1|RECF_STAA1 RecName: Full=DNA replication and repair protein recF gi|172048751|sp|A6QD43|RECF_STAAE RecName: Full=DNA replication and repair protein recF gi|189039645|sp|A6TXF4|RECF_STAA2 RecName: Full=DNA replication and repair protein recF gi|189039646|sp|A5INP5|RECF_STAA9 RecName: Full=DNA replication and repair protein recF gi|189039647|sp|A8YYS7|RECF_STAAT RecName: Full=DNA replication and repair protein recF gi|13699921|dbj|BAB41220.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus N315] gi|14245771|dbj|BAB56166.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus Mu50] gi|21203168|dbj|BAB93869.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus MW2] gi|49240386|emb|CAG39032.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus MRSA252] gi|49243359|emb|CAG41776.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus MSSA476] gi|57285298|gb|AAW37392.1| recF protein [Staphylococcus aureus subsp. aureus COL] gi|87201385|gb|ABD29195.1| DNA replication and repair protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739520|gb|ABQ47818.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus JH9] gi|149944936|gb|ABR50872.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus JH1] gi|150373015|dbj|BAF66275.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus str. Newman] gi|156720470|dbj|BAF76887.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367079|gb|ABX28050.1| recombination protein RecF [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728138|gb|EES96867.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH130] gi|257273218|gb|EEV05320.1| recombination protein F [Staphylococcus aureus subsp. aureus 55/2053] gi|257276508|gb|EEV07959.1| recombination protein F [Staphylococcus aureus subsp. aureus 65-1322] gi|257279994|gb|EEV10581.1| recombination protein F [Staphylococcus aureus subsp. aureus 68-397] gi|257283039|gb|EEV13171.1| recombination protein F [Staphylococcus aureus subsp. aureus E1410] gi|257285717|gb|EEV15833.1| recombination protein F [Staphylococcus aureus subsp. aureus M876] gi|257787514|gb|EEV25854.1| recombination protein RecF [Staphylococcus aureus A9781] gi|257840037|gb|EEV64502.1| recombination protein RecF [Staphylococcus aureus A9763] gi|257843134|gb|EEV67549.1| recombination protein F [Staphylococcus aureus A9719] gi|257848142|gb|EEV72134.1| recombination protein F [Staphylococcus aureus A9299] gi|257850845|gb|EEV74789.1| recombination protein F [Staphylococcus aureus A8115] gi|257855049|gb|EEV77992.1| recombination protein F [Staphylococcus aureus A6300] gi|257857551|gb|EEV80446.1| recombination protein RecF [Staphylococcus aureus A6224] gi|257860893|gb|EEV83710.1| recombination protein F [Staphylococcus aureus A5948] gi|257863498|gb|EEV86258.1| recombination protein F [Staphylococcus aureus A5937] gi|259160219|gb|EEW45248.1| DNA replication and repair protein [Staphylococcus aureus 930918-3] gi|259162433|gb|EEW47003.1| DNA replication and repair protein [Staphylococcus aureus D30] gi|262073984|gb|ACY09957.1| recombination protein F [Staphylococcus aureus subsp. aureus ED98] gi|269939530|emb|CBI47888.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus TW20] gi|282314767|gb|EFB45153.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus C101] gi|282323018|gb|EFB53337.1| RecF protein [Staphylococcus aureus subsp. aureus M899] gi|282323974|gb|EFB54290.1| recombination protein RecF [Staphylococcus aureus subsp. aureus WBG10049] gi|282326096|gb|EFB56401.1| recombination protein RecF [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329950|gb|EFB59471.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus Btn1260] gi|282590514|gb|EFB95592.1| DNA replication and repair protein recF [Staphylococcus aureus A10102] gi|282594131|gb|EFB99119.1| DNA replication and repair protein recF [Staphylococcus aureus A9765] gi|282763328|gb|EFC03458.1| DNA replication and repair protein recF [Staphylococcus aureus A8117] gi|283789080|gb|EFC27907.1| RecF protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290919217|gb|EFD96293.1| RecF protein [Staphylococcus aureus subsp. aureus M1015] gi|291096902|gb|EFE27160.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus 58-424] gi|291465519|gb|EFF08051.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus M809] gi|294823380|gb|EFG39809.1| DNA replication and repair protein recF [Staphylococcus aureus A9754] gi|294968333|gb|EFG44358.1| DNA replication and repair protein recF [Staphylococcus aureus A8819] gi|295127060|gb|EFG56704.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885909|gb|EFH24844.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177268|gb|EFH36521.1| DNA replication and repair protein recF [Staphylococcus aureus A8796] gi|297577708|gb|EFH96421.1| recombination protein F [Staphylococcus aureus subsp. aureus MN8] gi|298693326|gb|ADI96548.1| recF protein [Staphylococcus aureus subsp. aureus ED133] gi|300887651|gb|EFK82847.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH70] gi|302331776|gb|ADL21969.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302749915|gb|ADL64092.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341532|gb|EFM07442.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436855|gb|ADQ75926.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH60] gi|312828567|emb|CBX33409.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129547|gb|EFT85539.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS03] gi|315195230|gb|EFU25618.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS00] gi|315197922|gb|EFU28255.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS01] gi|320141421|gb|EFW33264.1| recombination protein F [Staphylococcus aureus subsp. aureus MRSA131] gi|320144404|gb|EFW36169.1| recombination protein F [Staphylococcus aureus subsp. aureus MRSA177] gi|323439695|gb|EGA97413.1| recombination protein F [Staphylococcus aureus O11] gi|323443268|gb|EGB00885.1| recombination protein F [Staphylococcus aureus O46] gi|329312727|gb|AEB87140.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus T0131] gi|329725526|gb|EGG62005.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus 21172] gi|329731646|gb|EGG68006.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus 21189] Length = 370 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D + +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRIS 368 + AK RI+ Sbjct: 354 IMNNAKLYRIN 364 >gi|167031026|ref|YP_001666257.1| recombination protein F [Pseudomonas putida GB-1] gi|189039633|sp|B0KEV1|RECF_PSEPG RecName: Full=DNA replication and repair protein recF gi|166857514|gb|ABY95921.1| DNA replication and repair protein RecF [Pseudomonas putida GB-1] Length = 367 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 163/353 (46%), Gaps = 16/353 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR + V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSSRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + P+ + F VE EG + + E + + ++R I+ R +L + L + Sbjct: 61 IQYEQPAC-TVFGEVELTEGGTCKLGVSRERQGEFTIR---IDGQNARSAAQLAELLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + E E L+L+ + D+ L Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE---L 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302 +E A L ++M T GP R+DL + + A I S G+QK+V+ + +A Sbjct: 233 QEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVVCALRIA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 287 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 339 >gi|302388603|ref|YP_003824424.1| DNA replication and repair protein RecF [Thermosediminibacter oceani DSM 16646] gi|302199231|gb|ADL06801.1| DNA replication and repair protein RecF [Thermosediminibacter oceani DSM 16646] Length = 367 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 99/352 (28%), Positives = 160/352 (45%), Gaps = 25/352 (7%) Query: 14 EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73 +FRN+ + F + GDNG GKTN+LEAI FL R R DV ++ Sbjct: 10 DFRNFREAEVEFSGGLNVLYGDNGQGKTNLLEAIHFLCNLRPVRTTREQDVI-----AWD 64 Query: 74 STFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 T A ++G+ G D + L D + VR + + EL + + P Sbjct: 65 KTKAYLKGVFDTSSGPVDRELLLVAGDRKKVRECGVER---HRLSELYWQIHAVFFSPDD 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA- 188 + G ERRRFLD ++ + P++ R + ++ R + RNRLL + + + ++++A Sbjct: 122 LSLVKGRPSERRRFLDLIIARLKPQYGRYLSEYNRALFHRNRLLKDLKKNRTLITALDAW 181 Query: 189 --QMAELGVKINIARVEMINALSSLIMEYV----QKENFPHIKLSLTGFLDGKFDQSFCA 242 Q++ LG I R L L+ +Y ++E IK + + G +S Sbjct: 182 DEQLSSLGTVILKTRAAFTEKLFPLVRKYYLYFSREEREIEIKYAGSIVSTGTSPES--- 238 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + E + L D S T +GPHR DL + + GS GEQ+ + + + A Sbjct: 239 IHEAFLAALRKSLPQDLASGYTRVGPHRDDLQFLLGGRDLRY-FGSQGEQRTLSLSLKFA 297 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 R+ TTG PILLLD+ + LD ++R + + + Q+F+T D S Sbjct: 298 ERRVFFETTGVYPILLLDDAMSELDANRRRWI--LEGEEPCQVFVTTVDLSA 347 >gi|325698042|gb|EGD39923.1| recombination protein F [Streptococcus sanguinis SK160] Length = 364 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/372 (24%), Positives = 164/372 (44%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F V G+ + L+ R ++N + + + + + Sbjct: 63 -----FTENELVVSGILEKKTSKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ E G ++ R++ + L S + + +N + + +L +L Sbjct: 178 LDDQLVEYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVK---YLSSIPLHQIDSL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYCSSLLSNRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD +++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRISNHQALC 374 K I Q + Sbjct: 351 KIFTIQQGQIIS 362 >gi|170755060|ref|YP_001779630.1| recombination protein F [Clostridium botulinum B1 str. Okra] gi|226737780|sp|B1IDU6|RECF_CLOBK RecName: Full=DNA replication and repair protein recF gi|169120272|gb|ACA44108.1| DNA replication and repair protein RecF [Clostridium botulinum B1 str. Okra] Length = 364 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 168/362 (46%), Gaps = 39/362 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ + Sbjct: 3 IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + ++ T+ E ++ DI+I + + + +N + I+ + EL +L + Sbjct: 63 WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P RI RR+FLD + I+ + ++ + +++ RN L +W + Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171 Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230 I + Q+++ G I R + ++ L ++I + + K+ NF + LT Sbjct: 172 INDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D FD + ++E L RK D T IGPHR D V + T GS G Sbjct: 227 IKD--FDNT----EKELLIVLKKNRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + A +I N G P+LLLD++ + LD +++ + + I + I TG Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339 Query: 351 DK 352 ++ Sbjct: 340 EE 341 >gi|89898370|ref|YP_515480.1| recombination protein F [Chlamydophila felis Fe/C-56] gi|123483260|sp|Q254F3|RECF_CHLFF RecName: Full=DNA replication and repair protein recF gi|89331742|dbj|BAE81335.1| DNA replication and repair protein [Chlamydophila felis Fe/C-56] Length = 367 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 92/342 (26%), Positives = 150/342 (43%), Gaps = 11/342 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNY ++ G+N GKTN+LEA+ LS GR FR + + GS Sbjct: 6 LRLKNFRNYKEAKISLSPNMNYIFGENAQGKTNLLEALYVLSLGRSFRTSHLTEAISFGS 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 FF +E S KL D+ + + + I+ + +L + I L S Sbjct: 66 AYFF-----LEMTCEKDGFSHKLSIYVDKHGKKILSDQSPIKTLSQLIGMVPIV-LFSSK 119 Query: 130 DRIF-SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 DR+ SG +RR FL+ ++ DP+++ + + R + RN LL S S + Sbjct: 120 DRLLISGSPSDRRLFLNLLLSQCDPQYKHTLSYYHRALLQRNSLLKTKQI--STLSVWDE 177 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 Q+A LG + ++R L+ L+ + HI++ L + S ++ EE Sbjct: 178 QLATLGAYLTLSRFTCCEQLNQLVQKLWNNSLSEHIRIKFKSSLIKQDKLSKESIIEELR 237 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 K+L D T +GPHR D + D ++ S G++ +L + LA I Sbjct: 238 KQLTSSLHRDLELGSTSVGPHREDFTLMINDLPVS-QFSSEGQKHSLLAILRLAECLYIK 296 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 N P+ +D+I + LD + + L + +G Q MT T Sbjct: 297 NIHNVCPLFCMDDIHSGLDNHRISQLLDLAPTLG-QTLMTST 337 >gi|187777364|ref|ZP_02993837.1| hypothetical protein CLOSPO_00920 [Clostridium sporogenes ATCC 15579] gi|187774292|gb|EDU38094.1| hypothetical protein CLOSPO_00920 [Clostridium sporogenes ATCC 15579] Length = 364 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 168/362 (46%), Gaps = 39/362 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ + Sbjct: 3 IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + ++ T+ E ++ DI+I + + + +N + I+ + EL +L + Sbjct: 63 WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P RI RR+FLD + I+ + ++ + +++ RN L +W + Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171 Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230 I + Q+++ G I R + ++ L ++I + + K+ NF + LT Sbjct: 172 INDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D FD + ++E L RK D T IGPHR D V + T GS G Sbjct: 227 IKD--FDNA----EKELLIALKKNRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + A +I N G P+LLLD++ + LD +++ + + I + I TG Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQRFVLNSIDKIQTIITCTGI 339 Query: 351 DK 352 ++ Sbjct: 340 EE 341 >gi|238926600|ref|ZP_04658360.1| possible recombination protein RecF [Selenomonas flueggei ATCC 43531] gi|238885546|gb|EEQ49184.1| possible recombination protein RecF [Selenomonas flueggei ATCC 43531] Length = 377 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 99/371 (26%), Positives = 161/371 (43%), Gaps = 34/371 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +R+Y +L L FD IF+G N GKTNI+EA+ + + GR R +S A++ Sbjct: 1 MQITELTLRSYRSYETLHLAFDPGVQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A I++ D R ++ + LR Sbjct: 61 IRVGADG--------------AHIALSFRRHDVPGALSFTFARGARRRIEYAGESLRQRD 106 Query: 125 LV---------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT- 174 LV P + G RRR+LD + P + ++ + R+++ RN +L Sbjct: 107 LVGILPMVLFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTRILKQRNAVLKD 166 Query: 175 --EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 E +AQ+A+ I R + L +L VQ +L+L + Sbjct: 167 IRERLAAPDDLLPWDAQLAKSAAYIVTRRTSAVAQLGALSAR-VQSVLAAGEELTLVYDI 225 Query: 233 DGKFDQSFCA--LKEE----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 G +S + E+ Y K L +GR D T +GPH DL++ + + Sbjct: 226 AGAAPESGAKDDMTEQLYLWYNKMLREGRARDIARAATGVGPHLDDLVLRVGGMNLR-SF 284 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 GS G+Q+ + + LA + G APILLLD++ + LD D+R AL + Q F Sbjct: 285 GSQGQQRTGALALKLAELFYLQENVGEAPILLLDDVMSELDADRRRALLDFIRHENIQTF 344 Query: 347 MTGTDKSVFDS 357 +T TD + F + Sbjct: 345 ITATDAAYFPA 355 >gi|104779319|ref|YP_605817.1| recombination protein F [Pseudomonas entomophila L48] gi|122985999|sp|Q1IH46|RECF_PSEE4 RecName: Full=DNA replication and repair protein recF gi|95108306|emb|CAK13000.1| DNA replication, recombinaison and repair protein [Pseudomonas entomophila L48] Length = 367 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/349 (26%), Positives = 162/349 (46%), Gaps = 16/349 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L+++ RN + L + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRLSVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F +VE EG +++ + E + + ++R I+ R +L + L + Sbjct: 61 IQYEQQTC-TVFGQVELAEGGTSNLGVSRERQGEFTIR---IDGQNARSAAQLAEMLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D+ Sbjct: 117 LINPDSFRLLEGAPKVRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAVSQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + E E L+L+ + D+ L Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE---L 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLA 302 E A L ++M T GP R+DL + + A I S G+QK+V+ + +A Sbjct: 233 NEVLATSLLRDQQMGH----TQAGPQRADLRLRLGANNAADIL--SRGQQKLVVCALRIA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 L+S I L+D++ + LDE R AL R++ ++ Q+F+T D Sbjct: 287 QGHLVSQVRRGQCIYLVDDLPSELDEQHRRALCRLLEELNCQVFITCVD 335 >gi|170016362|ref|YP_001727281.1| recombinational DNA repair ATPase (RecF pathway) [Leuconostoc citreum KM20] gi|226737812|sp|B1MW32|RECF_LEUCK RecName: Full=DNA replication and repair protein recF gi|169803219|gb|ACA81837.1| Recombinational DNA repair ATPase (RecF pathway) [Leuconostoc citreum KM20] Length = 378 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/354 (25%), Positives = 164/354 (46%), Gaps = 19/354 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNYA+L L F +F+G+N GKTN+LE+I L+ R R +S D+ Sbjct: 1 MELTSLKLVNYRNYANLELDFSPGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + R++ +S+ ++ ++ ++N + + + L + Sbjct: 61 INWTAKE-TTISGRIKKNISETPLSLHFSSKGKKA----RVNHLEQSKLSQYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180 P + G RRRF+D ++P + + + R+++ RN RL + D+ Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNITQYRRILKDRNAYLKRLQLKQTKDT 175 Query: 181 SWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + + Q+ +G ++ +AR V + A + I V + + L +D + Sbjct: 176 VFLDVLTDQLVSVGAEVILARQLFVRRLQAAAQPIHAEVSNQR-EQLTLVYQTSIDFEEH 234 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVV 295 +K +A L R + M T++GPHR DL IV+ D A+ GS G+Q+ Sbjct: 235 ADLEQIKATFAATLNRQRTREVMQGSTVVGPHRDDLQFIVNENDVAV---FGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + I LA L++ TG PILLLD++ + LD ++ L + D Q F+T Sbjct: 292 ALAIKLAEIDLMAQETGEYPILLLDDVLSELDASRQTHLLLAIQD-KVQTFITA 344 >gi|325689344|gb|EGD31350.1| recombination protein F [Streptococcus sanguinis SK115] Length = 364 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 164/372 (44%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTENDLLVS-GLLEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNTYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L L Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVK---YLSSIPLHQIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD +++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRISNHQALC 374 K I Q + Sbjct: 351 KIFTIQQGQIMS 362 >gi|283469233|emb|CAQ48444.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus ST398] Length = 370 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKETLSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D + +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSIDGIDHE 353 Query: 358 LNETAKFMRIS 368 + AK RI+ Sbjct: 354 IMNNAKLYRIN 364 >gi|302559663|ref|ZP_07312005.1| RecF protein [Streptomyces griseoflavus Tu4000] gi|302477281|gb|EFL40374.1| RecF protein [Streptomyces griseoflavus Tu4000] Length = 373 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 160/361 (44%), Gaps = 27/361 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYPRVEVPLGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE R+ R +R D L +R Sbjct: 61 VRMGA---DRAIVRAQVRQGERQQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALIKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229 D S + +A G ++ R+++I AL L E + P K S Sbjct: 177 RTLDLSTLDVWDQHLAHAGAELLARRLDLIGALQPLADKAYEQLAPGGGPLTLEYKPSAP 236 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 G D + D L E+ L + RK + TL+GPHR DL++ + + S Sbjct: 237 GEADTRED-----LFEQLMAALAEARKQEIERGVTLVGPHRDDLLLK-LGRLPAKGYASH 290 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLVLDDVFAELDTRRRERLAELVAP-GEQVLVTA 348 Query: 350 T 350 Sbjct: 349 A 349 >gi|269118645|ref|YP_003306822.1| DNA replication and repair protein RecF [Sebaldella termitidis ATCC 33386] gi|268612523|gb|ACZ06891.1| DNA replication and repair protein RecF [Sebaldella termitidis ATCC 33386] Length = 362 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/353 (22%), Positives = 168/353 (47%), Gaps = 15/353 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L+++ FR + ++ FD + G NG GKT+++EA+ FL+ G+ FR ++ Sbjct: 1 MKLKQLSLNNFRCLENKKIEFDPDFNLIYGKNGQGKTSLIEAVYFLATGKSFRTKKVKEL 60 Query: 65 T---RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 T +I + + S +++ G +I ++ +D+ + N + +D + L Sbjct: 61 TSYDKIRTIVYGSFESKLSGK------TIAIDFNNDKKEYYVDKNKT--KYIDYVG-ILN 111 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + +P I G RR F + + + + ++DFE++++ RN+L+ E + Sbjct: 112 VISFIPEDIEIIIGNPSVRRGFFNYEISQTKNIYLKTLVDFEKILKTRNKLIKERKTNKE 171 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQS 239 + E G KI + R E + +S L+ +K + ++L F+D + Sbjct: 172 LYHIYNEKFIEEGSKIILMRKEYVKNISRLLNLNYRKLFDANSELRLKYDSFIDNIDKMT 231 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +KE++ ++ + TL+GP + D + + K A S GE+K ++ + Sbjct: 232 LEEIKEKFREETVKKHDREKRYGYTLVGPQKEDFVFELNGKNAK-AFSSQGEKKSIIFSL 290 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +A ++ P+ L+D+IS++ DE ++N++ + Q F+T T+K Sbjct: 291 KIAEIDMLIKEKNEIPVFLIDDISSYFDEIRKNSILNYFKNKNIQCFITSTEK 343 >gi|300780156|ref|ZP_07090012.1| recombination protein F [Corynebacterium genitalium ATCC 33030] gi|300534266|gb|EFK55325.1| recombination protein F [Corynebacterium genitalium ATCC 33030] Length = 392 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 103/378 (27%), Positives = 170/378 (44%), Gaps = 32/378 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FR++ L L + T+F G NG GKTNI+EA + + R + + R Sbjct: 3 LRELDLRDFRSWPELNLALEPGVTVFSGRNGHGKTNIVEAAIYTATLASHRVSQDQPLIR 62 Query: 67 IGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + + V G E + IK+ R QIN ++ E+ LR Sbjct: 63 TGANNARISATTVNAGRELTTHLLIKV-----REQNQAQINRTRLKSPREMLGVLRTVVF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178 P + +G ERRRFLD + PR D+++++R RN LL GY Sbjct: 118 APEDLALVTGEPAERRRFLDTLASIRTPRFGGAKADYDKVLRQRNALLRSSNMALRRGYN 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP-HIKLSL 228 D S +++ +AQ+A G ++ R +I+ LS + V E+ P I+ S Sbjct: 178 DDSGAAALSTLDAWDAQLAAFGAQVVAGRRMLIDVLSDPVHNSYSSVAPESRPAAIEYSS 237 Query: 229 T-----GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAI 282 T L G+ L+ + ++L R+ D + R TL+GPHR DL++ D+ Sbjct: 238 TLDKAVAELAGEPSNDPAILEAAFLQELAR-RRRDEIDRGTTLVGPHRDDLLLTLGDQPA 296 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S GE + + LA L+S G P+L+LD++ A LD +R L + Sbjct: 297 K-GYASHGETWSFALALHLAEYALLSE-DGVDPVLILDDVFAELDAKRRERLVAVAQQAE 354 Query: 343 SQIFMTGTDKSVFDSLNE 360 + + D+L+E Sbjct: 355 QVLITAAVGDDLPDNLDE 372 >gi|149375633|ref|ZP_01893402.1| recombination protein F [Marinobacter algicola DG893] gi|149360035|gb|EDM48490.1| recombination protein F [Marinobacter algicola DG893] Length = 379 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/358 (25%), Positives = 163/358 (45%), Gaps = 18/358 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L FRN + + F + G NG GKT++LEAI +L GR FR + + V G Sbjct: 6 LQSENFRNLSPAPVSFSPSINLLYGANGSGKTSVLEAIGYLGLGRSFRVSRHQAVVSHGQ 65 Query: 70 PSFFSTFARVEGMEGL------ADISIKLETRDDRSVR--CLQINDVVIRVVDELNKHLR 121 +GM G +++ ++ D + + L+++ +R + L +HL Sbjct: 66 HKLTVFGGLDQGMSGAEQKPSSGELNHRVGISRDVTAKETTLRVDGEAVRNLSSLARHLP 125 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 +S + P + I +G +RR+FLD VF ++P +R+ RN++L G D + Sbjct: 126 VSVIDPGVFDIVAGGPGKRRQFLDWAVFHVEPSFASVWQQCQRVTSQRNQILRNGRIDDA 185 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGKFDQSF 240 ++Q EL ++ AR E + + + + P + L L ++ QS Sbjct: 186 LMKVWDSQYTELAERLTQARNETFRLFTKAFHSLLGEIDAPWVDGLKLDYYVGWDASQSL 245 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + L R+ + TL GP+R+D+ + Y + + S G+QK +++ + Sbjct: 246 VEV-------LRSHREQEQKMGHTLYGPNRADIRLRYQGRPVAETF-SRGQQKTLVILMK 297 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 +A ++S+ G LLD+I+A LD R L + + ++ Q+F+T + D L Sbjct: 298 IAQGMVLSD-LGKQVTFLLDDINAELDVVHRAMLAQKLHELRCQVFVTSIEAPRPDEL 354 >gi|168183730|ref|ZP_02618394.1| DNA replication and repair protein RecF [Clostridium botulinum Bf] gi|237793324|ref|YP_002860876.1| recombination protein F [Clostridium botulinum Ba4 str. 657] gi|259563360|sp|C3KXR0|RECF_CLOB6 RecName: Full=DNA replication and repair protein recF gi|182673206|gb|EDT85167.1| DNA replication and repair protein RecF [Clostridium botulinum Bf] gi|229261280|gb|ACQ52313.1| DNA replication and repair protein RecF [Clostridium botulinum Ba4 str. 657] Length = 364 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 167/362 (46%), Gaps = 39/362 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ + Sbjct: 3 IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + ++ T+ E ++ DI+I + + + +N + I+ + EL +L + Sbjct: 63 WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P RI RR+FLD + I+ + ++ + +++ RN L +W + Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171 Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230 I + Q+++ G I R + ++ L ++I + + K+ NF + LT Sbjct: 172 INDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D FD + L + K RK D T IGPHR D V + T GS G Sbjct: 227 IKD--FDNAEKELLMFFKK----NRKKDFERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + A +I N G P+LLLD++ + LD +++ + + I + I TG Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339 Query: 351 DK 352 ++ Sbjct: 340 EE 341 >gi|153933867|ref|YP_001382414.1| recombination protein F [Clostridium botulinum A str. ATCC 19397] gi|153935303|ref|YP_001385966.1| recombination protein F [Clostridium botulinum A str. Hall] gi|168181119|ref|ZP_02615783.1| DNA replication and repair protein RecF [Clostridium botulinum NCTC 2916] gi|226947226|ref|YP_002802317.1| DNA replication and repair protein RecF [Clostridium botulinum A2 str. Kyoto] gi|166220704|sp|A7FPF3|RECF_CLOB1 RecName: Full=DNA replication and repair protein recF gi|254790469|sp|C1FPH6|RECF_CLOBJ RecName: Full=DNA replication and repair protein recF gi|152929911|gb|ABS35411.1| DNA replication and repair protein RecF [Clostridium botulinum A str. ATCC 19397] gi|152931217|gb|ABS36716.1| DNA replication and repair protein RecF [Clostridium botulinum A str. Hall] gi|182668165|gb|EDT80144.1| DNA replication and repair protein RecF [Clostridium botulinum NCTC 2916] gi|226842327|gb|ACO84993.1| DNA replication and repair protein RecF [Clostridium botulinum A2 str. Kyoto] Length = 364 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 168/362 (46%), Gaps = 39/362 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ + Sbjct: 3 IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + ++ T+ E ++ DI+I + + + +N + I+ + EL +L + Sbjct: 63 WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P RI RR+FLD + I+ + ++ + +++ RN L +W + Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171 Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230 I + Q+++ G I R + ++ L ++I + + K+ NF + LT Sbjct: 172 INDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D FD + ++E L RK D T IGPHR D V + T GS G Sbjct: 227 IKD--FDNA----EKELLIVLKKNRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + A +I N G P+LLLD++ + LD +++ + + I + I TG Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339 Query: 351 DK 352 ++ Sbjct: 340 EE 341 >gi|322804282|emb|CBZ01832.1| DNA recombination and repair protein RecF [Clostridium botulinum H04402 065] Length = 364 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 167/362 (46%), Gaps = 39/362 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ + Sbjct: 3 IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + ++ T+ E ++ DI+I + + + +N + I+ + EL +L + Sbjct: 63 WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P RI RR+FLD + I+ + ++ + +++ RN L +W + Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171 Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230 I + Q+++ G I R + ++ L ++I + + K+ NF + LT Sbjct: 172 INDIIDVYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D FD + L + K RK D T IGPHR D V + T GS G Sbjct: 227 IKD--FDNAEKELLMLFKK----NRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + A +I N G P+LLLD++ + LD +++ + + I + I TG Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339 Query: 351 DK 352 ++ Sbjct: 340 EE 341 >gi|210624033|ref|ZP_03294150.1| hypothetical protein CLOHIR_02102 [Clostridium hiranonis DSM 13275] gi|210153240|gb|EEA84246.1| hypothetical protein CLOHIR_02102 [Clostridium hiranonis DSM 13275] Length = 368 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 177/370 (47%), Gaps = 24/370 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY L + F+ + + +G NG GKTNI E+I L+ G+ FR ++ Sbjct: 1 MKLKNLQLVNYRNYDKLYIEFNDRINLLLGSNGQGKTNIAESIYLLAFGKSFRTNRDREL 60 Query: 65 TRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + + G G+ +I+I ++ + +++N + I + EL ++ + Sbjct: 61 IKFNTENLYVGGGYEKNGRNGMVEIAIS------KAKKGIKVNKIPIVKLAELLGNINVV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P R+ RR F+DR + I P + + + +++ RN+LL D + Sbjct: 115 IFSPEDLRLVKDGPKIRRSFIDREISQIVPGYYGLLTGYNKILANRNKLLKNMNPDLNLL 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQ 238 + +A+ G KI + R + I ++ + + KE+ I S D Sbjct: 175 DVYDESLADYGSKIFMFRKKFIERIAEISKDMHARLTDNKEDLNVIYKSQIQINDE---- 230 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 ++K+++ L D RK D R + G H+ D+++ + + +GS G+Q+ + Sbjct: 231 --SSVKDKFINILKDKRKHDLDMRISGYGIHKDDILIQINGLDVRL-YGSQGQQRTASIS 287 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KSVF 355 + L+ LI+ G P+L+LD++ + LDE ++ L + D+ Q+F+T + K+V Sbjct: 288 LKLSEIELINREVGEYPLLILDDVFSELDEKRQKLLVDNLKDV--QMFITTAEYLHKNVL 345 Query: 356 DSLNETAKFM 365 D N T ++ Sbjct: 346 DMNNTTVFYI 355 >gi|167748046|ref|ZP_02420173.1| hypothetical protein ANACAC_02784 [Anaerostipes caccae DSM 14662] gi|167652526|gb|EDR96655.1| hypothetical protein ANACAC_02784 [Anaerostipes caccae DSM 14662] Length = 361 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 164/353 (46%), Gaps = 24/353 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + +RNY L + F + I GDN GKTNILEA+ + + R + ++ R Sbjct: 3 IQSLELKNYRNYDRLIIEFSSGTNILYGDNAQGKTNILEAVYLGATTKSHRGSKDKEIIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + R+ M+ I + + R+ + I+ + I+ +L + + + Sbjct: 63 FGENE---SHIRIHLMKQDIGHQIDMHLKKSRT-KGAAIDRIPIKRSSDLLGFVPVIFFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P I ERR+FLD + ++ + ++ + R+M RN LL + + ++ Sbjct: 119 PEDLSIIKNGPSERRKFLDIELSQLEKMYLHQLSSYNRVMAQRNNLLKQLAYQRELLDTL 178 Query: 187 EA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSF 240 ++ Q+ + G ++ R + I L+ +I E I +LTG + K+D S Sbjct: 179 DSWDLQLVKYGSEVIRYRQKFIEDLNEIIRE---------IHKNLTGKKEKIVLKYDYSV 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGI 299 +E+ L R++D T GPHR D +++ I I GS G+Q+ + + Sbjct: 230 NY--DEFLTVLQRKREIDLKYASTGAGPHRDD--IEFLVNGIDIRKFGSQGQQRTAALSL 285 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 LA L+ TG PILLLD++ + LD ++N L + DI + I TG ++ Sbjct: 286 KLAQIELVKRQTGETPILLLDDVLSELDSSRKNYLLDSIKDIQTLITCTGLEE 338 >gi|295402120|ref|ZP_06812079.1| DNA replication and repair protein RecF [Geobacillus thermoglucosidasius C56-YS93] gi|312109155|ref|YP_003987471.1| DNA replication and repair protein RecF [Geobacillus sp. Y4.1MC1] gi|294975803|gb|EFG51422.1| DNA replication and repair protein RecF [Geobacillus thermoglucosidasius C56-YS93] gi|311214256|gb|ADP72860.1| DNA replication and repair protein RecF [Geobacillus sp. Y4.1MC1] Length = 374 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 96/379 (25%), Positives = 169/379 (44%), Gaps = 25/379 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +RNY S + F I +G+N GKTN++EAI L+ + R A+ D+ R Sbjct: 6 LSLKNYRNYKSETIQFANNVNIILGENAQGKTNMMEAIYVLAMAKSHRTANDKDLIR--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG ++ LE ++ + +C N V + + + HL I Sbjct: 63 --WDEDYAKIEGRATTKSGALSLELIISKKGKKAKC---NHVEQQRLSQYVGHLNIVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRF+D + + P + + +++L++ RN L T D + Sbjct: 118 PEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMLQTREQQDETV 177 Query: 183 CSSIEAQMAELGVKINIARVE---MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q+ L KI + R E ++ ++ I + + +++ +D Sbjct: 178 LDILTEQLIPLAAKITLKRHEFLLLLEKWAAPIHREISR-GLETLQIQYRPSVDVSERME 236 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + E Y++K ++ + TL GPHR D++ K + GS G+Q+ + I Sbjct: 237 LSRIIEAYSEKFATIKEREIQRGMTLAGPHRDDILFSVNGKDVQ-TFGSQGQQRTTALSI 295 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDS 357 LA LI + G PILLLD++ + LD+ ++ L + Q F+T T D D Sbjct: 296 KLAEIELIFSEIGDYPILLLDDVLSELDDFRQTHLLDAIRQ-KVQTFVTTTSIDGIEHDI 354 Query: 358 LNETAKFMRISNH--QALC 374 + E A + S H LC Sbjct: 355 IKEAAIYKVHSGHVTAPLC 373 >gi|19551253|ref|NP_599255.1| recombination protein F [Corynebacterium glutamicum ATCC 13032] gi|62388896|ref|YP_224298.1| recombination protein F [Corynebacterium glutamicum ATCC 13032] gi|51316227|sp|Q6M8X7|RECF_CORGL RecName: Full=DNA replication and repair protein recF gi|21322768|dbj|BAB97397.1| Recombinational DNA repair ATPase [Corynebacterium glutamicum ATCC 13032] gi|41324229|emb|CAF18569.1| DNA REPAIR AND GENETIC RECOMBINATION PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 394 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 105/392 (26%), Positives = 176/392 (44%), Gaps = 43/392 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + ++R++ L++ + T+F+G NG GKTNI+EAI +L+ R +S A + Sbjct: 1 MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R + + S A +G E A + IK + S +N +R EL ++ Sbjct: 61 VRAHAENARVSAVAVNQGRELAAHLLIKPHAANQAS-----LNRTKVRTPRELLGVVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174 P + G ERRR+LD ++ PR D++++++ RN LL Sbjct: 116 LFAPEDLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQRNALLKTATIALRRG 175 Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME---YVQKENFPH---- 223 EG S + + Q+A LG ++ AR ++N L I E + E+ P Sbjct: 176 YGTEEGAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNY 235 Query: 224 ---IKLSLTGFLDGKFDQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 I L+ F +FD L E A K R+ + +L+GPHR D+ + Sbjct: 236 KTTIDQGLSQF--SEFDAGIIEATLLTELAAK----RQREIERGSSLVGPHRDDVDLMLG 289 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 D+ S GE + + +A L+ + G PIL+LD++ + LD +R L I Sbjct: 290 DQPAK-GFASHGETWSFALSLRIAEFNLL-KSDGTDPILILDDVFSELDAGRREKLVGIA 347 Query: 339 TDIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370 ++ Q+ +T +V D L E K + + H Sbjct: 348 QEV-EQVLITA---AVHDDLPENLKKVLTAQH 375 >gi|262193329|ref|YP_003264538.1| DNA replication and repair protein RecF [Haliangium ochraceum DSM 14365] gi|262076676|gb|ACY12645.1| DNA replication and repair protein RecF [Haliangium ochraceum DSM 14365] Length = 382 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 162/362 (44%), Gaps = 26/362 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + RN A L L + +F GDNG GKTN+LE I + R FR A++ Sbjct: 3 VRALKLEGIRNLAPLTLTPGPRFNVFHGDNGQGKTNLLETIYVVGALRSFRTQRLAELIA 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + AR++ GL + ++ + R VR ++ +R + + + Sbjct: 63 FERDRAY-IGARIQ-RGGLERVYELVQRQRGRQVR---LDGKAVRPISKYFGDFNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSS---- 181 P ++ G ERRRFLDR VF PR+ + ++++++ RN LL E G S Sbjct: 118 PEDLQVPRGSPAERRRFLDRAVFNRSPRYLGEVQAYDKVVKNRNALLRELGSGKRSLRQA 177 Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + + Q+AELG + RV ++ + E Q + H L++ D + Sbjct: 178 GDFLAVFDQQLAELGALLMRYRVHFLDEIRPRFQEAFQ--SITHTGLAVDVSYASAVDIT 235 Query: 240 FCA-----------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + L A + + R D + +GPHR DL+ + D A S Sbjct: 236 QASDSAESGPGSEQLTRALAAAIAERRPRDLARGSSSVGPHRDDLVFE-LDGHPAAAFAS 294 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+ + +++ A +L+++T G P+LLLD++S+ LD + LF + Q F+T Sbjct: 295 QGQLRALVLAWKTAEMQLLAHTHGEEPVLLLDDVSSELDATRNGYLFEFLKARRGQCFIT 354 Query: 349 GT 350 T Sbjct: 355 TT 356 >gi|157959833|ref|YP_001499867.1| recombination protein F [Shewanella pealeana ATCC 700345] gi|189039643|sp|A8GYE5|RECF_SHEPA RecName: Full=DNA replication and repair protein recF gi|157844833|gb|ABV85332.1| DNA replication and repair protein RecF [Shewanella pealeana ATCC 700345] Length = 360 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 103/355 (29%), Positives = 167/355 (47%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I FRN +S +L + G NG GKT+ILEAI FL GR FR V + Sbjct: 6 LHIESFRNISSAQLQPGDGLNLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRVIK-ND 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA +E + + I ++ D V+ IN ++ + L + L I + P S Sbjct: 65 DDALTLFANMESGDEQSKIGLRRFRSGDIEVK---INGDKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS---WCSS 185 +F G RR+F+D F DPR ++ R+++ RN+LL +G SS W Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDPRFYAAWVNVRRILKQRNQLLRDGSPYSSIQFWDKE 180 Query: 186 IEAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + AEL I V+ +N L +I E++ + + +K+S T D K Sbjct: 181 F-IRYAELVTDIRKQYVDSLNELLKGIIGEFLPQVD---VKVSFTRGWDA---------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L D + T+ GPH++DL + A S G+ K+++ + +A Sbjct: 228 TEYAQLLETQYPRDLATGYTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL 358 +L+ I L+D++ + LD R L + + D G+Q+F+T + ++ DSL Sbjct: 287 KLLKQQIDKKSIYLVDDLPSELDAKHRKLLLQQLADTGAQVFVTAIEPAAIVDSL 341 >gi|332365084|gb|EGJ42849.1| recombination protein F [Streptococcus sanguinis SK355] Length = 364 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 163/372 (43%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTENELLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHILKQRNAYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L L Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVK---YLSSIPLHQIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYCSSLLSSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD ++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNKRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRISNHQALC 374 K I Q + Sbjct: 351 KIFTIQQGQIIS 362 >gi|253730403|ref|ZP_04864568.1| recombination protein F [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725883|gb|EES94612.1| recombination protein F [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 370 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D + +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G P+LLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPVLLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRIS 368 + AK RI+ Sbjct: 354 IMNNAKLYRIN 364 >gi|251794040|ref|YP_003008771.1| DNA replication and repair protein RecF [Paenibacillus sp. JDR-2] gi|247541666|gb|ACS98684.1| DNA replication and repair protein RecF [Paenibacillus sp. JDR-2] Length = 369 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 14/350 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + + +RNY L LV D + +FVG N GKTN+LEAI L+ + R + D Sbjct: 3 LKSIQLQNYRNYKELELVTDNKVNLFVGPNAQGKTNLLEAIFALALTKSHRTSK--DKEL 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 IG + + AR+ G ++KL+ + +IN + R + + L + Sbjct: 61 IG---WEADSARIHGEVEKRYGTLKLDLMYSSQGKKAKINGLEQRKLSDFIGSLNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P I G RRRFLD + + P + + + +++ RN L S + + Sbjct: 118 PEDLEIVKGTPGIRRRFLDMEIGQVQPGYLHTLTQYTKVLAQRNNYLKTATPGGSQQAML 177 Query: 187 E---AQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQSF 240 E Q+AE GVKI R I+ L E++ + + DG + Sbjct: 178 EIWNMQLAEHGVKIMKKRKHFIHKLQRW-AEHIHSGITAGGERLTIEYRPSFDGGASEDE 236 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L E++ KL + + +L+GPHR D+ K + +GS G+Q+ + + Sbjct: 237 TVLFEQFMLKLSQVKDQEIRRGMSLVGPHRDDMAFFINGKEAAV-YGSQGQQRTTALSLK 295 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LA LI G P+LLLD++ + LD++++ L Q F+T T Sbjct: 296 LAEIELICEEIGEYPLLLLDDVLSELDQNRQTQLIETFQS-KVQTFITTT 344 >gi|322515803|ref|ZP_08068748.1| recombination protein F [Streptococcus vestibularis ATCC 49124] gi|322125765|gb|EFX97083.1| recombination protein F [Streptococcus vestibularis ATCC 49124] Length = 366 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 155/344 (45%), Gaps = 14/344 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++I FRNY + F IF+G N GKTNILEAI FL+ R R S ++ + Sbjct: 6 IDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQ--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F ++ G+ + LE R ++N + + + H+ + P Sbjct: 63 --FQQNTLKLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188 ++ G RR+F+D + I P + + + +++ RN L + D ++ S ++ Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFLSVLDE 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEE 246 Q+++ G ++ R+E I L + +K+S + ++ ++E Sbjct: 181 QLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPL---ENNNGIRES 237 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + L K D + T IGPHR DL D + + GS G+Q+ +++ + +A L Sbjct: 238 FLTTLKQNHKRDIFKKNTGIGPHRDDLTFYIND--MNASFGSQGQQRSLILSLKMAEIAL 295 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 I TG PILLLD++ + LD ++ L + D Q FMT T Sbjct: 296 IKKVTGEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTT 338 >gi|332363594|gb|EGJ41375.1| recombination protein F [Streptococcus sanguinis SK1059] Length = 364 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 164/372 (44%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNSYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L L Sbjct: 178 LDEQLVDYGCRVIKHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLHQIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD +++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRISNHQALC 374 K I Q + Sbjct: 351 KIFTIQQGQIMS 362 >gi|228478114|ref|ZP_04062725.1| DNA replication and repair protein RecF [Streptococcus salivarius SK126] gi|228250294|gb|EEK09547.1| DNA replication and repair protein RecF [Streptococcus salivarius SK126] Length = 366 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/363 (25%), Positives = 162/363 (44%), Gaps = 14/363 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++I FRNY + F IF+G N GKTNILEAI FL+ R R S ++ + Sbjct: 6 IDIQHFRNYTETSVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQ--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F ++ G+ + LE R ++N + + + H+ + P Sbjct: 63 --FQQNTLKLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188 ++ G RR+F+D + I P + + + +++ RN L + D ++ S ++ Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFLSVLDE 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEE 246 Q+++ G ++ R+E I L + +K+S + + ++ ++E Sbjct: 181 QLSDFGARVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNK---VIRES 237 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + L K D + T +GPHR DL D + + GS G+Q+ +++ + +A L Sbjct: 238 FLTTLKQNHKRDIFKKNTGVGPHRDDLTFYIND--MNASFGSQGQQRSLILSLKMAEIAL 295 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 I TG PILLLD++ + LD ++ L + D Q FMT T +L K Sbjct: 296 IKKVTGEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPSDLKTFL 354 Query: 367 ISN 369 ++N Sbjct: 355 VNN 357 >gi|227502244|ref|ZP_03932293.1| recombination protein F [Corynebacterium accolens ATCC 49725] gi|227077068|gb|EEI15031.1| recombination protein F [Corynebacterium accolens ATCC 49725] Length = 396 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 171/376 (45%), Gaps = 29/376 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L++ +FR++ L+L T+FVG NG GKTNI+EA+ + + R + + + R Sbjct: 3 IRDLDVRDFRSWPELKLELGPGITLFVGRNGFGKTNIVEAVGYTAHLSSHRVSHDSPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ S + V +G E + I+ + QIN +R EL ++ Sbjct: 63 QGAQSARVSLTAVNQGRELTTHLLIQ-----PHAANQAQINRTRLRSPRELLGVVKTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178 P + G RR +LD ++ + PR D++++++ RN LL GY Sbjct: 118 SPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRGYG 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSL 228 DS S++ +AQ+A LG ++ AR+ +++AL I + E+ P H++ Sbjct: 178 DSDGASALSTLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYAGLAPESRPAHVEYKS 237 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 T +D + A+ +L R+ + +L+GPHR DL++ D+ S Sbjct: 238 T--IDTSDREVLEAV---MLTELASARQREIERGISLVGPHRDDLVLHLGDQPAK-GFAS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G P+L+LD++ A LD +R L + + Sbjct: 292 HGETWSYAIALRLAEFELLREEGGSDPVLILDDVFAELDAKRRTQLVHLAATAEQVLITA 351 Query: 349 GTDKSVFDSLNETAKF 364 D+ + D+L ++ Sbjct: 352 AVDEDLPDNLEPIVRY 367 >gi|312864128|ref|ZP_07724363.1| DNA replication and repair protein RecF [Streptococcus vestibularis F0396] gi|311100360|gb|EFQ58568.1| DNA replication and repair protein RecF [Streptococcus vestibularis F0396] Length = 366 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 88/346 (25%), Positives = 157/346 (45%), Gaps = 18/346 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++I FRNY + F IF+G N GKTNILEAI FL+ R R S ++ + Sbjct: 6 IDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQ--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F ++ G+ + LE R ++N + + + H+ + P Sbjct: 63 --FQQNTLKLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVILFAPEN 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188 ++ G RR+F+D + I P + + + +++ RN L + D ++ S ++ Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFLSVLDE 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEE 246 Q+++ G ++ R+E I L + +K+S + + + ++E Sbjct: 181 QLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNN---VIRES 237 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + L K D + T +GPHR DL D + + GS G+Q+ +++ + +A L Sbjct: 238 FLTTLKQNHKRDIFKKNTGVGPHRDDLTFYIND--MNASFGSQGQQRSLILSLKMAEIAL 295 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGT 350 I TG PILLLD++ + LD ++ +++ IG Q FMT T Sbjct: 296 IKKVTGEFPILLLDDVMSELDNHRQ---LKLLESIGEEVQTFMTTT 338 >gi|332364154|gb|EGJ41931.1| recombination protein F [Streptococcus sanguinis SK49] Length = 364 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTDNDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVIKQRNAYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L Q L Sbjct: 178 LDDQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLQKIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD +++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRISNHQALC 374 K I Q + Sbjct: 351 KIFTIQQGQIVS 362 >gi|285815731|gb|ADC36218.1| DNA recombination and repair protein RecF [Staphylococcus aureus 04-02981] Length = 370 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEVLSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D + +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRIS 368 + AK RI+ Sbjct: 354 IMNNAKLYRIN 364 >gi|330685260|gb|EGG96921.1| DNA replication and repair protein RecF [Staphylococcus epidermidis VCU121] Length = 371 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 167/379 (44%), Gaps = 29/379 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + + + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTIDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FDSEYAKIEGDLNYRHGTMPLTMFITKRGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G + RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPLIRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQIGNKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q AE +K+ + R I L L E + + P +KLS Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELEQLAQPIHAGITNEREQLALKYLPSLKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 DQ+ + EE L D + + L GPHR DL + + +GS G Sbjct: 233 ----HQDQTESEMLEEILTLLNDNLQREKDRGVCLFGPHRDDLGFN-VNGMDAQTYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346 Query: 351 DKSVFD-SLNETAKFMRIS 368 D + AK RI+ Sbjct: 347 SVDGIDHEIMNNAKLYRIN 365 >gi|212637853|ref|YP_002314373.1| recombination protein F [Anoxybacillus flavithermus WK1] gi|212559333|gb|ACJ32388.1| Recombinational DNA repair ATPase RecF [Anoxybacillus flavithermus WK1] Length = 379 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/348 (25%), Positives = 156/348 (44%), Gaps = 15/348 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +RNY F + + +G+N GKTNI+E+I LS + R + D+ R Sbjct: 14 LTLKNYRNYEQGCWQFQNKVNVILGENAQGKTNIMESIYVLSMAKSHRTTNDKDLIR--- 70 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + +A++EG G + SI L+ + + ++N + + H+ + P Sbjct: 71 --WDEDYAKIEGKVGKKNGSIFLQLTVSKKGKKAKLNHIEQAKLSRYVGHMNVVMFAPED 128 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D + + P + + ++++++ RN+ L ++ D ++ Sbjct: 129 LNLVKGSPQIRRRFIDMEIGQVSPVYMHELGQYQKVLQQRNQYLKLLQSKKQTDETFLDV 188 Query: 186 IEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+ EL KI + R E I L + I + + N + + + Q + Sbjct: 189 LTEQLVELAAKITLKRYEFIELLQTWAKPIHAEISRGN-EQLAIHYCPSVHVLDKQQWSR 247 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + E Y K + + TLIGPHR DL K + GS G+Q+ + + LA Sbjct: 248 IVEVYNDKFARIKTKEIERGTTLIGPHRDDLSFTINGKDVQ-TFGSQGQQRTTALSLKLA 306 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LI + G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 307 EIDLIFSEIGEYPILLLDDVLSELDDFRQTHLLNAIQG-KVQTFVTTT 353 >gi|307710347|ref|ZP_07646788.1| DNA replication and repair protein recF [Streptococcus mitis SK564] gi|307618939|gb|EFN98074.1| DNA replication and repair protein recF [Streptococcus mitis SK564] Length = 363 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 165/372 (44%), Gaps = 26/372 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--------HIKLSLTGFLDGKFD 237 ++ Q+ G ++ R++ I L S + +K++F I + L K D Sbjct: 178 LDDQLVNYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVKLTDKED 233 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L E + L R D + T +GPHR D + + + + GS G+ + +++ Sbjct: 234 -----LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVL 286 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 I LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T + Sbjct: 287 SIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQN 345 Query: 358 LNETAKFMRISN 369 L E I + Sbjct: 346 LPENLSIFTIQD 357 >gi|262200049|ref|YP_003271257.1| DNA replication and repair protein RecF [Gordonia bronchialis DSM 43247] gi|262083396|gb|ACY19364.1| DNA replication and repair protein RecF [Gordonia bronchialis DSM 43247] Length = 397 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 102/364 (28%), Positives = 162/364 (44%), Gaps = 32/364 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FR++ + L A+ T+F G NG GKTNILEA+ +L+ R R ++ A + Sbjct: 3 VRELHLRDFRSWRTADLELAAEPTVFTGRNGFGKTNILEALQYLATLRSHRVSTDAPLVH 62 Query: 67 IGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ S T A VE G E A + I E + S IN+ R E+ LR Sbjct: 63 SGATSALVT-ATVENSGRELTAQLRINAEGANKAS-----INNGPPRRAREVIGILRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177 P + G +RRRF+D +V P H D++R++R R LL G Sbjct: 117 FAPEDLSLVRGDPTDRRRFIDELVAQRGPLHVAARSDYDRVLRQRAALLKTAGAAMRRGG 176 Query: 178 FDSSWCSSI----EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 D++ S +AQ+AE G + ARV+++N L + E PH + + +L Sbjct: 177 GDAASVISTLDVWDAQLAEHGAAVTAARVDVLNELRPHVTE-AYASIAPHSRPTDLAYLP 235 Query: 234 GKFDQ---------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 A+ E +L R + L+GPHR D+ + D I Sbjct: 236 AAGPDVLPPAGARADVAAIGETLLAQLAQVRTKEIERGVCLVGPHRDDVGIILGDD-IAK 294 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 S GE + + + L L + G P+++LD++ A LD +R L +D Q Sbjct: 295 GFASHGESWSLALALRLGSVAL-TRAEGVEPVIMLDDVFAELDATRRRKLATFTSD-AEQ 352 Query: 345 IFMT 348 + +T Sbjct: 353 LLVT 356 >gi|322377917|ref|ZP_08052405.1| DNA replication and repair protein RecF [Streptococcus sp. M334] gi|321281093|gb|EFX58105.1| DNA replication and repair protein RecF [Streptococcus sp. M334] Length = 365 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/377 (23%), Positives = 169/377 (44%), Gaps = 26/377 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ +++ FRNY ++ F+ + +F+G N GKTN+LEAI FLS R R + ++ Sbjct: 3 LQHISLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLSLTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ S+ LE + + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSVPLEIKLTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSTQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--------HIKLSLTGFLDGKFD 237 ++ Q+ + G ++ R++ I L + + +K++F I + + K D Sbjct: 178 LDEQLVDYGCRVMNHRLDFIKKLEA----FGRKKHFELSNQIEELSISYQSSVKITDKED 233 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L E + L R D + T +GPHR D + + + + GS G+ + +++ Sbjct: 234 -----LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVL 286 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 I LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T + Sbjct: 287 SIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQN 345 Query: 358 LNETAKFMRISNHQALC 374 L E I Q + Sbjct: 346 LPENLSIFTIQGGQVVV 362 >gi|309388285|gb|ADO76165.1| DNA replication and repair protein RecF [Halanaerobium praevalens DSM 2228] Length = 374 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 97/352 (27%), Positives = 164/352 (46%), Gaps = 30/352 (8%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN+ L L + IF+G NG GKTN LE+I ++ R + +++ Sbjct: 11 FRNFKELMLDLNPNLNIFLGANGQGKTNFLESIYLMATANSHRSSISSEMINWQQNKSLV 70 Query: 75 TFA--RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 R EG IKL R +++ + ++IND + V EL +L P ++ Sbjct: 71 QLLLRRREG-------KIKLAMRLEKNNKQVEINDNPLDKVKELFGYLNAVLFSPEDLKL 123 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSSWCSSI-EA 188 RR F+D + + P + + ++ L+ RN+LL EG + + + Sbjct: 124 IKEGPSHRREFIDLEISQVSPYYNHLLSKYDHLLSQRNKLLKSIREGKSKNREMLPVWDE 183 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 Q+A +G KI + R+E+IN L I+ + + + +L D + + E Sbjct: 184 QLATIGTKIILKRIEVINKLK--ILARLSQRKITEGRENLELEYDTSLNHFSPKMGEAEL 241 Query: 249 KKLFDGRKMDSM-SRR--------TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + LF +DS+ S+R T+IGPHR D+I+ + + +GS G+Q+ + + Sbjct: 242 RNLF----IDSLISKRDQEISRGYTVIGPHRDDIILRVNEMNLR-KYGSQGQQRTAALAL 296 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LA + + TG P+LLLD++ + LD +R AL I+ D Q +T TD Sbjct: 297 KLAELEFMKSETGEYPVLLLDDVFSELDGLRRKALINIIAD-KIQTIITATD 347 >gi|77407728|ref|ZP_00784483.1| DNA replication and repair protein RecF [Streptococcus agalactiae COH1] gi|77173727|gb|EAO76841.1| DNA replication and repair protein RecF [Streptococcus agalactiae COH1] Length = 369 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 165/366 (45%), Gaps = 14/366 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ +RNY ++ F IF+G N GKTN LEAI FL+ R R S ++ Sbjct: 3 IKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 T V G ++ I+L + R ++N + + + + + Sbjct: 63 FKHHDVQIT-GEVIRKSGHLNLDIQLSEKG----RITKVNHLKQAKLSDYIGAMTVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+FLD + I + + ++ +++ RN L T D ++ + Sbjct: 118 PEDLQLVKGAPSLRRKFLDIDIGQIKSTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+A+ G ++ R + I AL+ Y+ H+ + ++ D+S ++ Sbjct: 178 LDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFT-DKS--SI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + +L D + T IGPHR D+ D I GS G+Q+ +++ + LA Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI T PILLLD++ + LD ++ L + + Q F+T T +L + K Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351 Query: 364 FMRISN 369 +S+ Sbjct: 352 IFNVSD 357 >gi|332654822|ref|ZP_08420564.1| DNA replication and repair protein RecF [Ruminococcaceae bacterium D16] gi|332516165|gb|EGJ45773.1| DNA replication and repair protein RecF [Ruminococcaceae bacterium D16] Length = 372 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/377 (24%), Positives = 166/377 (44%), Gaps = 33/377 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + FRNYA + F + + GDN GKTN+LEAI++LS R R ++ Sbjct: 1 MKLNRLELDFFRNYAHVEATFHPRVNLIYGDNAQGKTNLLEAIAYLSSARSHRARYDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123 + P + ++G + + LE + R R L N + ++ EL L Sbjct: 61 IMLNEPQGY-----IKGEVDSRERTFILEAKLCRGKTRQLWSNGLRLKTAGELAGILTTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + + RRRFLD + + PR+ + + ++ RL + R+L + + S Sbjct: 116 LFCPEDLYLIREGAAARRRFLDGAICQLRPRYAQALAEYNRLYEHKTRILRDWQENPSLL 175 Query: 184 SSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQ 238 +++ +MA+ G +I R + L E P I +G + G + Sbjct: 176 DTLDDFNLRMAQFGARIIHYRAHFVRRLG---------EQAPAIHADFSGGREQLGLRYE 226 Query: 239 SFCALKEEYA--KKLFDG--------RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + +++ + +F+ R+ + SR+ L GPH+ DL+V+ D GS Sbjct: 227 TVSTVQDPLGSVQDIFESLMRHQESHRRAELDSRQCLSGPHKDDLVVE-LDGQSAKQFGS 285 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+ + + + LA + TG P+LLLD++ + LD +++ + + G Q+F+T Sbjct: 286 QGQTRTAALSLKLAQREIFQQETGEWPVLLLDDVLSELDGKRQSFVLNRIQ--GGQVFIT 343 Query: 349 GTDKSVFDSLNETAKFM 365 + D L F Sbjct: 344 CCEPEKLDGLERGKSFQ 360 >gi|329732499|gb|EGG68849.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus 21193] Length = 370 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + H+ + Sbjct: 61 IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHINVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D + +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRIS 368 + AK RI+ Sbjct: 354 IMNNAKLYRIN 364 >gi|312142412|ref|YP_003993858.1| DNA replication and repair protein RecF [Halanaerobium sp. 'sapolanicus'] gi|311903063|gb|ADQ13504.1| DNA replication and repair protein RecF [Halanaerobium sp. 'sapolanicus'] Length = 373 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 168/348 (48%), Gaps = 22/348 (6%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN+ + L ++ IF+GDNG GKTN+LEAI ++ R + +++ Sbjct: 11 FRNFDEIILDLNSNLNIFLGDNGQGKTNLLEAIYIMATTNSHRSSVCSELINWKKEEALI 70 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 +E EG +IKL R D+ R +++ND + V E+ +L P ++ Sbjct: 71 QLL-LERREG----NIKLAMRLDKGGRRVELNDNPLDKVKEMVGYLNAVLFSPEDLKLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSSWCSSI-EAQM 190 RR F++ + + + + ++ +++ RN LL +G S SI + Q+ Sbjct: 126 EGPSHRREFINLEISQVSRYYNHLLSKYDHILKQRNNLLKSIRDGKKSSENMLSIWDEQL 185 Query: 191 AELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + +G KI + R+E+++ L L I E ++ + +SL GF + + L Sbjct: 186 STIGAKIILKRIEVVDKLKILARLSQRQITEGKEELEIEY-DISLDGFSEKMGEAELRGL 244 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + K L + R+ + T+IGPHR DLI+ + + +GS G+Q+ + + LA Sbjct: 245 ---FNKNLKEKREQEINRGYTVIGPHRDDLILKINEMDLR-KYGSQGQQRTAALALKLAE 300 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + TG P+LLLD++ + LD +R AL I+ + Q +T TD Sbjct: 301 LEFMKSETGEYPVLLLDDVFSELDSLRRKALINIIAN-KIQTIITATD 347 >gi|126172260|ref|YP_001048409.1| recombination protein F [Shewanella baltica OS155] gi|160873129|ref|YP_001552445.1| recombination protein F [Shewanella baltica OS195] gi|166221862|sp|A3CYH7|RECF_SHEB5 RecName: Full=DNA replication and repair protein recF gi|189039641|sp|A9KU74|RECF_SHEB9 RecName: Full=DNA replication and repair protein recF gi|125995465|gb|ABN59540.1| DNA replication and repair protein RecF [Shewanella baltica OS155] gi|160858651|gb|ABX47185.1| DNA replication and repair protein RecF [Shewanella baltica OS195] gi|315265354|gb|ADT92207.1| DNA replication and repair protein RecF [Shewanella baltica OS678] Length = 360 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 104/362 (28%), Positives = 168/362 (46%), Gaps = 25/362 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LNI FRN S +L+ + G NG GKT+ILEAI FL GR FR V Sbjct: 6 LNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-ND 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + G + I ++ + VR I+ ++ + L + L I + P S Sbjct: 65 DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSI 186 +F G RR+F+D F DP+ + R+++ RN+LL G Y + + Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGSAYSNIQFWDQE 180 Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + AE +I V+ +N L +I E++ + +K+S T D K D F L E Sbjct: 181 FVRYAEQVTEIRNHYVDSLNELLKGIIGEFLPSVD---VKVSFTRGWDSKTD--FAELLE 235 Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y++ L G T+ GPH++DL + A S G+ K+++ + +A Sbjct: 236 NQYSRDLATG--------HTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363 +L+ I L+D++ + LD R L + +TD G+Q+F+T D ++ DSL+ Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346 Query: 364 FM 365 M Sbjct: 347 RM 348 >gi|217971219|ref|YP_002355970.1| recombination protein F [Shewanella baltica OS223] gi|304412707|ref|ZP_07394310.1| DNA replication and repair protein RecF [Shewanella baltica OS183] gi|307305828|ref|ZP_07585574.1| DNA replication and repair protein RecF [Shewanella baltica BA175] gi|254790487|sp|B8E3P6|RECF_SHEB2 RecName: Full=DNA replication and repair protein recF gi|217496354|gb|ACK44547.1| DNA replication and repair protein RecF [Shewanella baltica OS223] gi|304348917|gb|EFM13332.1| DNA replication and repair protein RecF [Shewanella baltica OS183] gi|306911321|gb|EFN41747.1| DNA replication and repair protein RecF [Shewanella baltica BA175] Length = 360 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 104/362 (28%), Positives = 168/362 (46%), Gaps = 25/362 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LNI FRN S +L+ + G NG GKT+ILEAI FL GR FR V Sbjct: 6 LNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-ND 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + G + I ++ + VR I+ ++ + L + L I + P S Sbjct: 65 DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSI 186 +F G RR+F+D F DP+ + R+++ RN+LL G Y + + Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGSSYSNIQFWDQE 180 Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + AE +I V+ +N L +I E++ + +K+S T D K D F L E Sbjct: 181 FVRYAEQVTEIRNHYVDSLNELLKGIIGEFLPSVD---VKVSFTRGWDSKTD--FAELLE 235 Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y++ L G T+ GPH++DL + A S G+ K+++ + +A Sbjct: 236 NQYSRDLATG--------HTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363 +L+ I L+D++ + LD R L + +TD G+Q+F+T D ++ DSL+ Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346 Query: 364 FM 365 M Sbjct: 347 RM 348 >gi|70725005|ref|YP_251919.1| recombination protein F [Staphylococcus haemolyticus JCSC1435] gi|82581561|sp|Q4LAL2|RECF_STAHJ RecName: Full=DNA replication and repair protein recF gi|68445729|dbj|BAE03313.1| DNA repair and genetic recombination protein [Staphylococcus haemolyticus JCSC1435] Length = 371 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 164/379 (43%), Gaps = 29/379 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLKTLQLENYRNYEEVTLECHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F S +A++EG+ ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNSEYAKIEGVLNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKQDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q A+ + + + R I L SL E + P IKLS Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIKELESLAKPIHAGITNERETLSLTYLPSIKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + L +E L D K + L GPHR DL + D +GS G Sbjct: 233 ----DMSKGEQTLWDEVITLLNDNIKREMDRGVCLFGPHRDDLGFNVNDMDAQ-TYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346 Query: 351 DKSVFD-SLNETAKFMRIS 368 D + AK RI+ Sbjct: 347 SVDGIDHEIMNNAKLYRIN 365 >gi|289577269|ref|YP_003475896.1| DNA replication and repair protein RecF [Thermoanaerobacter italicus Ab9] gi|289526982|gb|ADD01334.1| DNA replication and repair protein RecF [Thermoanaerobacter italicus Ab9] Length = 362 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/354 (25%), Positives = 163/354 (46%), Gaps = 21/354 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRN R+ F IF G N GK+N+LE+I LS GR FR + ++ R Sbjct: 3 VKELFVDNFRNLEKQRIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKSTELVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F + + + D I+ + D + + +++N I+ + EL L Sbjct: 63 FGENYF---YVKAIICQENNDKKIEFGYKKDGN-KVIKVNSNKIKSISELLGQLLTVIFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183 P I RR++LD + I+ + ++ + +++ RN+LL EG + Sbjct: 119 PEDLNIIKEGPSHRRKYLDSCISIIEKNYLYNLMQYNKILMNRNKLLKNIKEGK-SKNIL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G KI + R + L I ++ + E + L+ G D +++ Sbjct: 178 EIFDNQLVEYGAKIIMVRQNYLKNLEINIKKFLLEISNEKAEIVYLNSVGLKDASDEET- 236 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298 +K+ +KL +D T +GPHR D +I++ D + + S G+Q+ + Sbjct: 237 --VKKRLKEKLSKNIDLDLKYLTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTAALC 291 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ ++ T P+LLLD++ + LDE+++ + + G Q F+T T K Sbjct: 292 LKLSEFEILKKATNEKPVLLLDDVMSELDENRKKYVLEKLK--GFQTFITHTTK 343 >gi|315650189|ref|ZP_07903264.1| recombination protein F [Eubacterium saburreum DSM 3986] gi|315487546|gb|EFU77854.1| recombination protein F [Eubacterium saburreum DSM 3986] Length = 363 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/367 (24%), Positives = 167/367 (45%), Gaps = 19/367 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + ++RNY +L + IF GDN GKTNILE+I + + R + D+ R Sbjct: 3 IESLELKDYRNYENLNIKLSTGVNIFYGDNAQGKTNILESIYLATTSKSHRGSKDKDIIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ++ M D S++++ ++ + + IN + IR + EL + + Sbjct: 63 FGAGE-----SHIKLMIKRMDASVRMDMHIKKNKAKGVAINGIPIRKLSELFGTCNVVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERR F+D + ++ + ++ + +++ RN+LL E F + + Sbjct: 118 SPEDLNIIKRSPKERRNFVDMELCQLNKVYVSTLVTYNKVLEQRNKLLKEIGFKTGLEDT 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + Q+ + G + R E + L+ +I + I LTG K Sbjct: 178 LDIWDMQLIKYGTDLISYREEFVKKLNEVIFD---------IHSRLTGGEKIKVIYEKNI 228 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 K+ + +L R D + T +GPHR D ++ GS G+Q+ + + + L+ Sbjct: 229 EKDNFEAELRKSRTNDIKYKTTNVGPHRDDFSFFLNNEMDLKKFGSQGQQRSLALSLKLS 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 LI G P+LLLD++ + LD +++ L + I + I TG + + SL + Sbjct: 289 EIELIKVRYGEFPVLLLDDVLSELDGKRQSHLLESIRHIQTLITCTGVEDFLNKSL-DIG 347 Query: 363 KFMRISN 369 K ++N Sbjct: 348 KVFNVTN 354 >gi|302384448|ref|YP_003820270.1| DNA replication and repair protein RecF [Clostridium saccharolyticum WM1] gi|302195076|gb|ADL02647.1| DNA replication and repair protein RecF [Clostridium saccharolyticum WM1] Length = 361 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 160/360 (44%), Gaps = 34/360 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY L + F I GDN GKTN+LEAI + + R + ++ + Sbjct: 3 IESIELKNYRNYDELHMDFSQGTNILYGDNAQGKTNVLEAIYVCATTKSHRGSKDKEIIQ 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 S R + D+ +K + + +N V I+ EL + + + Sbjct: 63 FDRDESHIKLNIRKNNIPYRIDMHLK-----KNKAKGVAVNGVPIKKASELFGIVNVVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + ERRRF+D + ++ + ++ + R++ RN+LL + F + + Sbjct: 118 SPEDLNLIKNGPAERRRFVDLELCQLNRYYVHSLVQYNRIVTQRNKLLKDMAFRPDYEET 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK------- 235 ++ Q+ + G ++ R E I L +I S+ G L G+ Sbjct: 178 LDVWDMQLVQYGKEMIGYRKEFIEQLDGIIG-------------SIHGQLSGEKEHLRIL 224 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA-HGSTGEQKV 294 ++ + A EE+ + + R+ D + TL GPHR DL + I I +GS G+Q+ Sbjct: 225 YEPNVGA--EEFEEAIRRSRQQDMKQKTTLTGPHRDDL--SFVINGIDIRRYGSQGQQRT 280 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + LA L+ T PILLLD++ + LD ++N L + I + I TG ++ V Sbjct: 281 AALSLKLAEIELVEKTVFDYPILLLDDVLSELDNSRQNQLLAGINHIQTVITCTGLEEFV 340 >gi|269303216|gb|ACZ33316.1| DNA replication and repair protein RecF [Chlamydophila pneumoniae LPCoLN] Length = 364 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 161/368 (43%), Gaps = 13/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L + FRN++ L + + VG N GKTN+LEA+ LS GR FR D Sbjct: 3 MKICSLKLKNFRNHSDLEISLAPKLNYIVGKNAQGKTNLLEALYVLSLGRSFRTQHLTDT 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GS FF +E + L D+ + + N + I+ + +L + I Sbjct: 63 ITFGSSHFF-----LETQFEKDHLPQALSIYTDKQGKKIFYNQLPIKTLSQLIGKVPIV- 116 Query: 125 LVPSMDRIF-SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 L S DR+ SG +RR FL+ ++ D + + + R ++ RN LL +S Sbjct: 117 LFSSKDRLLISGAPADRRLFLNLLLSQCDSHYTLCLSYYHRALQQRNALLKSK--QTSTV 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + Q+ + G ++I R LS L E + L L D S A+ Sbjct: 175 AIWDEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNNLKEQLALKFKSSLIKNSDISETAV 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 EE+ K+L D T +GPHR D ++ ++ S G++ +L + LA Sbjct: 235 AEEFHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQMPVS-QFSSEGQKHSLLAILRLAE 293 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 + + +P++ LD+I A LD ++ L + +G Q +T T + L +T+ Sbjct: 294 CLYLKQSHHVSPLVCLDDIHAGLDNERVGQLLDLAPTLG-QTLITSTH--MHGELPKTSL 350 Query: 364 FMRISNHQ 371 + I N Q Sbjct: 351 VLSIENAQ 358 >gi|319936687|ref|ZP_08011100.1| DNA replication and repair protein recF [Coprobacillus sp. 29_1] gi|319808244|gb|EFW04809.1| DNA replication and repair protein recF [Coprobacillus sp. 29_1] Length = 369 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 166/356 (46%), Gaps = 28/356 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + + FRNY + F IF+G N GKTN+LEAI LS + F+ + Sbjct: 1 MKINHIELKNFRNYKDCSVDFAPFINIFIGKNAQGKTNLLEAIYILSLSKSFKTKVIEEF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F FA++ G + I LE + + IN I+ + +L + Sbjct: 61 I-----YFNEDFAKIHGRVNSHEKDIDLEVVLSKYGKKAIINHKEIKKTSDYVGYLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGY--FD 179 +P + G RR+ +D + I P + + + +L++ RN ++L E + +D Sbjct: 116 FIPEDLMLIKGSPRLRRKLMDMEISKISPIYMYNLNKYNKLLKERNKYLKMLHEKHRRYD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVE---MINALSSLIMEYV--QKENFPHIKLSLTGFLDG 234 + + QMA L V + R+E ++N +SS + +Y+ KE KL + Sbjct: 176 -EYLDVLSEQMARLQVDLIKKRIEFVDLLNDISSTMYDYISLHKE-----KLRIEYKCIY 229 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 K D S+ + E+Y K + D +T+ G H+ D+++ DK +A+ S G+Q+ Sbjct: 230 K-DLSYEGILEKYQK----NYQRDISYSQTVDGLHKDDMLMSLDDKD-AVAYASQGQQRS 283 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +++ I + LI G PILLLD++ + LD+ ++ L ++ Q F+T T Sbjct: 284 IVLAIKIGLLELIKKEIGEYPILLLDDVLSELDDVRKTKLLNLIQG-KVQTFLTST 338 >gi|90408444|ref|ZP_01216604.1| recombination protein F [Psychromonas sp. CNPT3] gi|90310428|gb|EAS38553.1| recombination protein F [Psychromonas sp. CNPT3] Length = 360 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 98/360 (27%), Positives = 164/360 (45%), Gaps = 31/360 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L F+ Q + GDNG GKT +LEAI FL GR FR + Sbjct: 6 LVIHQFRNIHSATLHFNKQINVITGDNGSGKTALLEAIYFLGLGRSFRSHLSNRIITHEH 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F FA ++ I +K +TR S+ L+IN + + +L +HL + + P Sbjct: 66 PEFI-LFAEIDEQGVQVPIGLK-KTRKGESI--LKINTRIATKLADLTQHLPLQLITPDS 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI-EA 188 + SG RR FLD VF DP + +RL++ RN L + C + E Sbjct: 122 INLLSGSPKNRRAFLDWGVFYHDPLFYQTWARIKRLLKQRNAALKQ-------CKTYNEL 174 Query: 189 QMAE-----LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 Q+ + L +I+ R L LI + + + P + ++ F +D + +L Sbjct: 175 QLWDNELCFLSTEISDQRQRYFQQLIPLIEKTI-ADFLPEFSIKMSFFCG--WDNTNKSL 231 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ + D + D T GP ++D+ I Y + S G+ K+ + + Sbjct: 232 QQYF----IDNFERDKQLGYTTAGPQKADIRFKIGSYPLADVL----SRGQLKLFVYALR 283 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA ++N + L+D+ S+ LD+ K+ L + + +Q+F++ DK+ ++L E Sbjct: 284 LAQGLFLNNVNNKKCVFLIDDFSSELDQSKQQILAKHIIQSDAQLFISVIDKNHIENLFE 343 >gi|322386450|ref|ZP_08060079.1| recombination protein F [Streptococcus cristatus ATCC 51100] gi|321269536|gb|EFX52467.1| recombination protein F [Streptococcus cristatus ATCC 51100] Length = 371 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/363 (24%), Positives = 161/363 (44%), Gaps = 10/363 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I FRNY + + FD IF+G N GKTNILEAI FL+ R R + D+ Sbjct: 3 LKTLKIKHFRNYQAAEVDFDPGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRTDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I+L + R +IN + + + + + Sbjct: 63 FQEKN-LQISGIIEKTTGKIPLDIELTPKG----RITKINHLKQGKLSDYIGIVNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPALRRKFIDIELGQIKPIYLADLSSYNHVLKQRNAYLKANDKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ Q+ + G ++ R++ I L E + KL++ F L+ Sbjct: 178 LDEQLIDFGCRVMQHRLDFIEKLEDFAQESHSDISQGKEKLTIKYVSSVPF-SCLENLEA 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 + L + R+ D + T +GPHR D +++ + GS G+ + +++ + LA + Sbjct: 237 SFRSALSESRRRDLFKKNTGVGPHRDD--INFFINDMDAGFGSQGQHRSLVLSLKLAEIK 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 LI + T PILLLD++ + LD ++ L ++ Q F+T T +L + Sbjct: 295 LIESLTKDTPILLLDDVMSELDNMRQLKLLETISQ-NIQTFITTTSLDHLQNLPDDINIF 353 Query: 366 RIS 368 +IS Sbjct: 354 QIS 356 >gi|160878166|ref|YP_001557134.1| DNA replication and repair protein RecF [Clostridium phytofermentans ISDg] gi|189039622|sp|A9KPP4|RECF_CLOPH RecName: Full=DNA replication and repair protein recF gi|160426832|gb|ABX40395.1| DNA replication and repair protein RecF [Clostridium phytofermentans ISDg] Length = 360 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 92/370 (24%), Positives = 170/370 (45%), Gaps = 29/370 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L +S FRNY +L L F I GDN GKTNILEA+ + + + + ++ + Sbjct: 3 VKSLELSNFRNYENLSLEFSPSTNILYGDNAQGKTNILEAVFLCATTKSHKGSKDREIIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + S R+ D + + + ++ + + I+ + I+ EL + + + Sbjct: 63 LQSE---EAHIRMRINRDDVDHRLDMHLKKNKP-KGVAIDGIPIKRSSELFGIINVVFFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P I ERRRF+D + + + +I++ +++ RN LL + F+ S ++ Sbjct: 119 PEDLSIIKNGPSERRRFIDMELCQLSKLYLHNLINYNKVLNQRNNLLKQIGFNKSLLDTL 178 Query: 187 ---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-- 241 + Q+ G + R + +++ LI+ H KLS DGK + Sbjct: 179 YVWDQQLIHFGSALIKERDAFMKSMNELIIAL-------HKKLS-----DGKEELEIVYE 226 Query: 242 --ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLV 297 + E+ KL + D + T +GPHR DL +++ D +GS G+Q+ + Sbjct: 227 ASVAESEFENKLKKSMERDIALKVTNVGPHRDDLSFLINGQD---VRKYGSQGQQRTAAL 283 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA L+ T PILLLD++ + LD ++N L + I + + TG ++ V + Sbjct: 284 SLKLAEIELVKQVTKDKPILLLDDVLSELDRKRQNQLLDSIVGIQTIVTCTGLEEFVNNR 343 Query: 358 LNETAKFMRI 367 + ET + ++ Sbjct: 344 I-ETDRIYKV 352 >gi|87161857|ref|YP_492726.1| recombination protein F [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|97180982|sp|Q2FKQ2|RECF_STAA3 RecName: Full=DNA replication and repair protein recF gi|87127831|gb|ABD22345.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus USA300_FPR3757] Length = 370 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/352 (25%), Positives = 155/352 (44%), Gaps = 13/352 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D + +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 345 >gi|315612172|ref|ZP_07887087.1| recombination protein F [Streptococcus sanguinis ATCC 49296] gi|315315733|gb|EFU63770.1| recombination protein F [Streptococcus sanguinis ATCC 49296] Length = 365 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 91/368 (24%), Positives = 165/368 (44%), Gaps = 22/368 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 3 LQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + T G+ SI LE R ++N + + + H+ + Sbjct: 63 FDNEQLHLT-----GLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALK 244 ++ Q+ + G ++ R++ I L ++ QK+ H+++S L + S Sbjct: 178 LDDQLIDYGCRVIKHRIKFIKDLE----KFGQKK---HLEISNKLEKLSISYQSSVNFTN 230 Query: 245 EEYAKKLF-----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 EE F R D + T +GPHR D + + + + GS G+ + +++ I Sbjct: 231 EEQLTSSFKIALDKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 289 KLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347 Query: 360 ETAKFMRI 367 E I Sbjct: 348 ENLSIFNI 355 >gi|163751707|ref|ZP_02158926.1| DNA replication and repair protein RecF [Shewanella benthica KT99] gi|161328446|gb|EDP99602.1| DNA replication and repair protein RecF [Shewanella benthica KT99] Length = 365 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 106/359 (29%), Positives = 170/359 (47%), Gaps = 31/359 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I FRN AS +L+ + G NG GKT+ILEAI FL GR FR V + S Sbjct: 6 LHIETFRNIASAQLLPGEGINLIYGLNGSGKTSILEAIYFLGMGRSFRSHLSQRVIQ-HS 64 Query: 70 PSFFSTFAR--VEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLV 126 + FA V+G E K+ R RS ++I+ ++ + L + L I + Sbjct: 65 DDKLTLFANLTVQGKES------KIGLRRFRSGETEVKIDGDKVKRLSTLAEFLPIQVIT 118 Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWC 183 P S +F G RR+F+D F D R I+ +R+++ RN+LL Y + Sbjct: 119 PESFALLFEG-PKSRRQFIDWGAFHCDERFHSAWINVKRILKQRNQLLKNEASYAQIQYW 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFC 241 + +E+ I R + +N+L+ L+ ++ E P +K+S T D K D Sbjct: 178 DRELVRYSEVVTDI---RTQYVNSLNELLKGIIE-EFLPQVDVKISFTRGWDSKTD---- 229 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 YA+ L D S T GPH++DL + + A S G+ K+++ + + Sbjct: 230 -----YAQLLETQYPRDVSSGNTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRI 283 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN 359 A +L+ I L+D++ + LD R L + +TD G+Q+F+T + ++ DSLN Sbjct: 284 AQGKLLKQQIDKNSIYLVDDLPSELDAKHRQLLLQQLTDTGAQVFVTAIEPAAILDSLN 342 >gi|297543502|ref|YP_003675804.1| DNA replication and repair protein RecF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841277|gb|ADH59793.1| DNA replication and repair protein RecF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 362 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/354 (25%), Positives = 163/354 (46%), Gaps = 21/354 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRN R+ F IF G N GK+N+LE+I LS GR FR + ++ R Sbjct: 3 VKELFVDNFRNLEKQRIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKSTELVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F + + + D I+ + D + + +++N I+ + EL L Sbjct: 63 FGENYF---YVKAIICQENNDKKIEFGYKKDGN-KVIKVNSNKIKSISELLGQLLTVIFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183 P I RR++LD + I+ + ++ + +++ RN+LL EG + Sbjct: 119 PEDLNIIKEGPSHRRKYLDSCISIIEKNYLYNLMQYNKILMNRNKLLKNIKEGK-SKNIL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G KI + R + L I ++ + E + L+ G D +++ Sbjct: 178 EIFDDQLVEYGAKIIMVRQNYLKNLEINIKKFLLEISNEKAEIVYLNSVGLKDASDEET- 236 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298 +K+ +KL +D T +GPHR D +I++ D + + S G+Q+ + Sbjct: 237 --VKKRLKEKLSKNIDLDLKYLTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTAALC 291 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ ++ T P+LLLD++ + LDE+++ + + G Q F+T T K Sbjct: 292 LKLSEFEILKKATNEKPVLLLDDVMSELDENRKKYVLEKLK--GFQTFITHTTK 343 >gi|162456448|ref|YP_001618815.1| RecF protein [Sorangium cellulosum 'So ce 56'] gi|161167030|emb|CAN98335.1| RecF protein [Sorangium cellulosum 'So ce 56'] Length = 383 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 161/359 (44%), Gaps = 29/359 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I EFRN + + + + G+NG GKT++LEAI F + R FR A++ R Sbjct: 17 LERLHIREFRNLGRVDVEPAPRINVIAGNNGQGKTSLLEAIYFAATSRSFRTHRLAELVR 76 Query: 67 IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+P S AR VE + L ++ + +T RC V+R+ L S+ Sbjct: 77 HGAP-IASARARFVERRDALQPLA-REQTAAVEHKRC------VVRIDGNRPPSL-ASFA 127 Query: 126 VPSMDRIF--------SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 S F +G + RR LDR+ +DP+ + + +R R+ LL G Sbjct: 128 TRSPVVAFHAEELALSTGPASARRTLLDRLALFMDPQSADHRARYAQALRARHELLHRGG 187 Query: 178 FDSSWCS----SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + S + EA A G + AR + AL+ + + P + L+ Sbjct: 188 GAQAQASAELDAFEALCALHGAALTRAREAAVQALAPELTHAFARIAAPDLTLAARYAPG 247 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G D E+ + L + R+ D+ GPHR DL+++ + S G+ + Sbjct: 248 GGGD------AEQAREALREQRRRDAHRPSAGYGPHRDDLLLELDGHPARVV-ASQGQHR 300 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + A I++ G PILLLD++S+ LD D+ ALF + Q+F+T T + Sbjct: 301 ALTLALKAAETAAIASVRGVEPILLLDDVSSELDPDRTAALFMFLGMARGQVFLTTTRR 359 >gi|158334838|ref|YP_001516010.1| recombination protein F [Acaryochloris marina MBIC11017] gi|189039615|sp|B0CB57|RECF_ACAM1 RecName: Full=DNA replication and repair protein recF gi|158305079|gb|ABW26696.1| DNA replication and repair protein RecF [Acaryochloris marina MBIC11017] Length = 374 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 169/359 (47%), Gaps = 15/359 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FRNY + ++ F A TI VG N GK+N+LEA+ LS + R + D+ + Sbjct: 3 LQQLHLIQFRNYVAQQVEFSAPKTILVGPNAQGKSNLLEAVELLSTLKSHRVSRDRDLVK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G S A ++ G D+S+ L R+V +N IR + HL I Sbjct: 63 DGE-SLSQVTATLQRESGPLDLSLTLRANGRRTVS---VNSETIRRQLDFLGHLNIVQFS 118 Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GYFD 179 MD + G ERR +LD ++ ++P + + ++++++ RN L D Sbjct: 119 SLDMDLVRGG-PGERRNWLDAVLVQLEPVYAHLLQQYQQVLKQRNAYLKHHRADDAPQLD 177 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 Q+A G ++ R M+ L L + Q + +L + + +D Sbjct: 178 PQQLVLWNQQLAASGSRVIQRRQRMLMRLVPLAGHWHQTISGHQEQLEILYTPNVSYDPQ 237 Query: 240 FC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 F L ++ +L + ++ + +L+GPHR ++ + + +GS G+Q+ +++ Sbjct: 238 FPEQLYPQFLSQLEEKSMLEQLQGLSLVGPHRDEVTL-LINGTPARQYGSQGQQRTLVLA 296 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA +LI G AP+LLLD++ A LD +++N L + Q +T T FD+ Sbjct: 297 LKLAELKLIEEVVGEAPLLLLDDVLAELDLNRQNQLLDAI-QTRFQTLITTTHLGAFDA 354 >gi|328883700|emb|CCA56939.1| DNA recombination and repair protein RecF [Streptomyces venezuelae ATCC 10712] Length = 373 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 103/360 (28%), Positives = 159/360 (44%), Gaps = 29/360 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLSSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R +G I+LE R+ R +R D L +R Sbjct: 61 VRMGAER---AVIRAAVTQGERSQLIELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLSLVKGDPGERRRFLDELITARTPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLTGFL 232 D S + +A G ++ R+E+I L L E + P I L Sbjct: 177 RGMDLSTLDVWDQHLARAGAELLAQRLELIAVLQPLADKAYEQLAPGGGP-ILLEYRPSA 235 Query: 233 DGKFDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 G +EE +L D RK + TL+GPHR +L++ D + S Sbjct: 236 PGAGHT-----REELYAQLIDALAEVRKQEIERGVTLVGPHRDELLLKLGDLPAK-GYAS 289 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ + G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 290 HGESWSYALALRLASYDLL-RSEGNEPVLVLDDVFAELDARRRERLAELVAG-GEQVLVT 347 >gi|289168901|ref|YP_003447170.1| recombination protein recF [Streptococcus mitis B6] gi|288908468|emb|CBJ23310.1| recombination protein recF [Streptococcus mitis B6] Length = 365 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 85/363 (23%), Positives = 164/363 (45%), Gaps = 14/363 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 6 LSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + G+ SI LE + R ++N + + + H+ + P Sbjct: 66 EQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSSIEA 188 ++ G RR+F+D + I P + + ++ +++ RN L D ++ S ++ Sbjct: 121 LQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSVLDD 180 Query: 189 QMAELGVKINIARVEMINALSSL-IMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCALKEE 246 Q+ + G ++ R++ I L ++ + N + +S ++ +Q+ L E Sbjct: 181 QLVDYGCRVMNHRLDFIKKLEYFGCKKHFELSNQIEELSISYQSSVNITDNQN---LSES 237 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + L R D + T +GPHR D + + + + GS G+ + +++ I LA L Sbjct: 238 FKIALEKSRSRDLFKKNTGVGPHRDD--ISFYLNGMDASFGSQGQHRSLVLSIKLAEIEL 295 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 296 MESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLSIFT 354 Query: 367 ISN 369 I + Sbjct: 355 IQD 357 >gi|146319836|ref|YP_001199548.1| recombination protein F [Streptococcus suis 05ZYH33] gi|146322027|ref|YP_001201738.1| recombination protein F [Streptococcus suis 98HAH33] gi|253752812|ref|YP_003025953.1| DNA replication and repair protein RecF [Streptococcus suis SC84] gi|253754637|ref|YP_003027778.1| DNA replication and repair protein RecF [Streptococcus suis P1/7] gi|253756570|ref|YP_003029710.1| DNA replication and repair protein RecF [Streptococcus suis BM407] gi|166221874|sp|A4W4P9|RECF_STRS2 RecName: Full=DNA replication and repair protein recF gi|166221876|sp|A4VYF9|RECF_STRSY RecName: Full=DNA replication and repair protein recF gi|145690642|gb|ABP91148.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus suis 05ZYH33] gi|145692833|gb|ABP93338.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus suis 98HAH33] gi|251817101|emb|CAZ52753.1| DNA replication and repair protein RecF [Streptococcus suis SC84] gi|251819034|emb|CAZ56881.1| DNA replication and repair protein RecF [Streptococcus suis BM407] gi|251820883|emb|CAR47649.1| DNA replication and repair protein RecF [Streptococcus suis P1/7] gi|292559432|gb|ADE32433.1| RecF protein [Streptococcus suis GZ1] gi|319759228|gb|ADV71170.1| recombination protein F [Streptococcus suis JS14] Length = 364 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 88/363 (24%), Positives = 162/363 (44%), Gaps = 14/363 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNY L + F +F+G+N GKTNILE+I L+ R R + D+ + Sbjct: 6 LELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S + G + I L + R ++N + + H+ + P Sbjct: 66 KE-LSISGLLHRTSGKVPLDIHLTDKG----RVTKVNHLKQAKLSNYIGHMNVVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188 ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S ++ Sbjct: 121 LQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQRNTYLKSTDKIDENFLSVLDQ 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEE 246 Q+AE G ++ R++ + L VQ+ N + + ++ D L ++ Sbjct: 181 QLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDD---VNLIDK 237 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + +L RK D + T +GPHR D V + + + S G+ + +++ + LA L Sbjct: 238 FLTELEKSRKRDLFKKNTGVGPHRDD--VAFFINGMNAHYASQGQHRSLVLSLKLAEIEL 295 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + T PILLLD++ + LD +++ L +TD Q F+T T L ++ K Sbjct: 296 MKEVTREYPILLLDDVMSELDNNRQIKLLETITDT-IQTFITTTSLDHLHKLPDSLKIFH 354 Query: 367 ISN 369 I + Sbjct: 355 IES 357 >gi|282902635|ref|ZP_06310528.1| RecF protein [Staphylococcus aureus subsp. aureus C160] gi|282918072|ref|ZP_06325822.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus D139] gi|282921294|ref|ZP_06329012.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus C427] gi|283767794|ref|ZP_06340709.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus H19] gi|282315709|gb|EFB46093.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus C427] gi|282318357|gb|EFB48717.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus D139] gi|282597094|gb|EFC02053.1| RecF protein [Staphylococcus aureus subsp. aureus C160] gi|283461673|gb|EFC08757.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus H19] Length = 370 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A E+ L D + + +L GPHR D+ D + +GS G+Q+ + Sbjct: 236 NEAARLEDIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRIS 368 + AK RI+ Sbjct: 354 IMNNAKLYRIN 364 >gi|258423234|ref|ZP_05686126.1| recombination protein F [Staphylococcus aureus A9635] gi|257846563|gb|EEV70585.1| recombination protein F [Staphylococcus aureus A9635] Length = 370 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 161/371 (43%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + EE L D + + +L GPHR D+ D + +GS G+Q+ + Sbjct: 236 NEATRLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRIS 368 + AK RI+ Sbjct: 354 IMNNAKLYRIN 364 >gi|329576321|gb|EGG57836.1| DNA replication and repair protein RecF [Enterococcus faecalis TX1467] Length = 375 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 89/355 (25%), Positives = 168/355 (47%), Gaps = 18/355 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + Y D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKYPDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235 + + Q+AE G K+ AR+ + L QK H + +LT Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 D S AL+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ Sbjct: 234 TDLSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + I LA L+ + TG P+LLLD++ + LD +++ L + + Q F+T T Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346 >gi|212632927|ref|YP_002309452.1| recombination protein F [Shewanella piezotolerans WP3] gi|226737834|sp|B8CH73|RECF_SHEPW RecName: Full=DNA replication and repair protein recF gi|212554411|gb|ACJ26865.1| DNA replication and repair protein RecF [Shewanella piezotolerans WP3] Length = 360 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 167/359 (46%), Gaps = 33/359 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I FRN S +L + G NG GKT+ILEAI FL GR FR V + Sbjct: 6 LHIEAFRNITSAQLQPGDGLNVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVINNDA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + + FA ++ E + I ++ + V+ IN ++ + L + L I + P S Sbjct: 66 DA-LTLFANMQSAEDESKIGLRRFRSGEIEVK---INGDKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE- 187 +F G RR+F+D F DPR ++ R+++ RN+LL D S SSI+ Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDPRFYAAWVNVRRILKQRNQLLR----DESPYSSIQF 176 Query: 188 -----AQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSF 240 + AEL +I V+ +N L I+E E P +K+S T D Sbjct: 177 WDKEFIRYAELVTEIRKQYVDSLNELLKGIIE----EFLPQVDVKVSFTRGWDS------ 226 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K EYA+ L D + T+ GPH++DL + A S G+ K+++ + Sbjct: 227 ---KTEYAQLLETQYPRDLATGFTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALR 282 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL 358 +A +L+ I L+D++ + LD R L + + D G+Q+F+T + ++ DSL Sbjct: 283 IAQGKLLKQQIDKKSIYLVDDLPSELDAQHRKLLLQQLADTGAQVFVTAIEPAAIVDSL 341 >gi|307711205|ref|ZP_07647627.1| DNA replication and repair protein recF [Streptococcus mitis SK321] gi|307617167|gb|EFN96345.1| DNA replication and repair protein recF [Streptococcus mitis SK321] Length = 365 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 166/372 (44%), Gaps = 26/372 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKQTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--------HIKLSLTGFLDGKFD 237 ++ Q+ + G ++ R++ I L S + +K++F I + + K D Sbjct: 178 LDDQLIDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKED 233 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L E + L R D + T +GPHR D + + + + GS G+ + +++ Sbjct: 234 -----LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVL 286 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 I LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T + Sbjct: 287 SIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQN 345 Query: 358 LNETAKFMRISN 369 L E I + Sbjct: 346 LPENLSIFTIQD 357 >gi|326793325|ref|YP_004311145.1| DNA replication and repair protein recF [Marinomonas mediterranea MMB-1] gi|326544089|gb|ADZ89309.1| DNA replication and repair protein recF [Marinomonas mediterranea MMB-1] Length = 366 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 96/357 (26%), Positives = 161/357 (45%), Gaps = 34/357 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I++ RN ++ Q + VG+NG GKT++LEAI LS GR FR + + Sbjct: 6 LDIAKLRNLTKIQFEPSHQVNVIVGENGSGKTSVLEAIHLLSYGRSFRSHKHKTYIQHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRD---DRSVRCLQINDVVIRVVDELNKHLRISWLV 126 FA+++ + I +K RD D V+ +++ +V EL + L + + Sbjct: 66 AECI-VFAQLKASTSVFPIGLK-RARDGAIDVRVQGEKVHSIV-----ELAERLPVQLIN 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P R+ G RR+F+D F D + D+++ ++ RN LL G + ++ Sbjct: 119 PDAFRLLEGSPKIRRQFVDWGAFHFDVQFMPAWRDWQKALKQRNSLLKRGKISPNLLAAF 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-----KFDQSFC 241 + ++ LG +N R + L P+ K L D F Q + Sbjct: 179 DQELIRLGGTVNEVRQAYVKHL------------IPYFKTVLNALSDELDVSLNFTQGWD 226 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV--DYCDKAITIAHGSTGEQKVVLVGI 299 A K A+ L G D T GP R+DL V D T+ S G+QK+V+ + Sbjct: 227 AQK-TLAEALESGVNRDIELGYTHSGPQRADLRVKTKAGDALDTL---SRGQQKLVVSAL 282 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +A +++++ G + L+D++ A LD + R L R++ + SQIF+T D Sbjct: 283 KIAQGQVLTD-MGRPLVFLVDDLPAELDANHRQKLCRLLESLNSQIFITSVGSDSLD 338 >gi|55823899|ref|YP_142340.1| recombination protein F [Streptococcus thermophilus CNRZ1066] gi|116628673|ref|YP_821292.1| recombination protein F [Streptococcus thermophilus LMD-9] gi|81676484|sp|Q5LXI7|RECF_STRT1 RecName: Full=DNA replication and repair protein recF gi|122266733|sp|Q03I76|RECF_STRTD RecName: Full=DNA replication and repair protein recF gi|55739884|gb|AAV63525.1| DNA repair and genetic recombination protein [Streptococcus thermophilus CNRZ1066] gi|116101950|gb|ABJ67096.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus thermophilus LMD-9] gi|312279328|gb|ADQ63985.1| DNA replication and repair protein recF [Streptococcus thermophilus ND03] Length = 366 Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 94/368 (25%), Positives = 167/368 (45%), Gaps = 24/368 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++I FRNY+ + F IF+G N GKTNILEAI FL+ R R ++ D I Sbjct: 6 IDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHR--THLDKELI-- 61 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F ++ G+ ++ LE R ++N + + + H+ + P Sbjct: 62 -QFQQNSLKLNGIVHRHSGNLPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188 ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S ++ Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDINFLSVLDE 180 Query: 189 QMAELGVKINIARVEMINALS-------SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 Q+A+ G ++ R+E I L S++ +++ +K+S + Q+ Sbjct: 181 QLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIER-----LKISYESNIPI---QNSK 232 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++E + L K D + T +GPHR DL D + + GS G+Q+ +++ + + Sbjct: 233 DIREAFLTTLNQNHKRDIFKKNTGVGPHRDDLKFYIND--MNASFGSQGQQRSLILSLKM 290 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A LI T PILLLD++ + LD ++ L + D Q FMT T +L Sbjct: 291 AEIALIKKVTEEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPPN 349 Query: 362 AKFMRISN 369 K + N Sbjct: 350 LKTFLVKN 357 >gi|326383912|ref|ZP_08205596.1| recombination protein F [Gordonia neofelifaecis NRRL B-59395] gi|326197371|gb|EGD54561.1| recombination protein F [Gordonia neofelifaecis NRRL B-59395] Length = 405 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 98/383 (25%), Positives = 173/383 (45%), Gaps = 33/383 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++ R T+FVG NG GKTN+LE++ +++ R R +S A + R Sbjct: 3 VRELTLRDFRSWPQARFTLSPGTTVFVGRNGFGKTNLLESLFYVATLRSHRVSSDAPLVR 62 Query: 67 IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + + EG E +++I + + + IN +R E+ LR Sbjct: 63 TGADAARVTATVENEGRELTVELTIPAQGANKAT-----INTRPVRRTREVLGILRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------GY 177 P + G ERRRF+D +V + P +D++R++R R+ LL G Sbjct: 118 APEDLALVRGDPGERRRFIDELVAQLRPLAAGAKVDYDRVLRQRSALLKTASAAMRRGGE 177 Query: 178 FDSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 S S++ +AQ+AELG ++ +R+ ++ L+ + + PH + + + Sbjct: 178 QAESVLSTLDVWDAQLAELGAQVTASRLAVVRQLAPFVTD-AYSSIAPHSRPAHISYRSA 236 Query: 235 K---------FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 D A+++ A++L + R + L+GPHR DL + D+ Sbjct: 237 AGESVDASPGGDAEIDAIRDVLAQRLVELRSKEIDRGLCLVGPHRDDLFLGLGDEPAK-G 295 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 S GE + + L L+ G PI++LD++ A LD +R L T Q+ Sbjct: 296 FASHGESWSFALSLRLGSVELL-RADGVEPIIMLDDVFAELDVTRRRLLAEF-TASADQL 353 Query: 346 FMTGTDKSVFDSLNETAKFMRIS 368 +T +V D + E+ RIS Sbjct: 354 LITA---AVPDDIPESIVGRRIS 373 >gi|303228584|ref|ZP_07315411.1| putative DNA replication and repair protein RecF [Veillonella atypica ACS-134-V-Col7a] gi|302516763|gb|EFL58678.1| putative DNA replication and repair protein RecF [Veillonella atypica ACS-134-V-Col7a] Length = 366 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 98/364 (26%), Positives = 162/364 (44%), Gaps = 26/364 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY L L + + G NG GKTNILEAI + G+ R +D+ Sbjct: 1 MRINSLQLFQFRNYKDLTLDLQPEIIVLYGTNGAGKTNILEAIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + E E ++IKL + + +R +ND I EL L Sbjct: 61 LLFNANE-AGIVVNFEKKETPQKVNIKLFRQGPKDIR---LNDTKIS-QKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RRRFLD + + +++ + RL++ RN LL E + Sbjct: 116 FCPEDLQLIKGSPSGRRRFLDMEISQTSATYYHQLLQYNRLLQQRNTLLKEYRGKQNIPL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSF 240 + + Q+A++ I R+E + ++ LI +K LTG L+ ++Q + Sbjct: 176 AEWDVQLADMAAFIVKKRMESLKKINLLIDLMNRK---------LTGGLENLTIGYEQPY 226 Query: 241 ------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 KE + L + D T +GPHR DL + D GS G+Q+ Sbjct: 227 GEEGHMVYTKEAFYDLLQEALPQDRHRMTTSVGPHRDDLRF-FSDAIDLKKFGSQGQQRT 285 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 ++ + L+ I + G P+LLLD++ + LDE +RN L + + Q +T TD Sbjct: 286 AVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDEARRNNLLQFIHK-RIQTVITTTDIHD 344 Query: 355 FDSL 358 F+++ Sbjct: 345 FENM 348 >gi|325478881|gb|EGC81991.1| putative DNA replication and repair protein RecF [Anaerococcus prevotii ACS-065-V-Col13] Length = 359 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 17/348 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L ++ FRNY + F+ + IF+GDN GKTN+LE++ +L+ G F++ D+ R Sbjct: 3 IKDLKLNNFRNYFYQSVEFNEDYNIFIGDNAQGKTNLLESVYYLANGTSFKKIRDNDIIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S + ++SI+++ +D + + +N V +L +I Sbjct: 63 F-SQSQMRLKGTIRKGRSFKEVSIEVKDKD----KSIFVNGVKYDRRKDLRSLFKIVLFT 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183 P I RR +D ++ ID ++ + D+++++ RNRLL + YF+ Sbjct: 118 PEDLAIIKEGPNLRRDLIDGIIEGIDFSYKAKKRDYDKILYQRNRLLKNKSSSYFNEQ-L 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S+ + + +LG I R + +N L E+ L + D D F + Sbjct: 177 SAFDENLMKLGFSIYKTRKKFVNILEKFAREFHSSLTEGSELLEMKYLPDISAD-DFSSY 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E+ K GR D T G HR D+ + K T S G+Q+ ++ I LA Sbjct: 236 VGEFKK----GRSDDLKYLTTQRGIHRDDIEISINGKN-TKNFASQGQQRSAILNIRLAE 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +L TG ++L D++ + LDE + +LF + G Q +T T+ Sbjct: 291 VKLTKEVTGDEAVILFDDVFSELDE--KRSLFLLENLRGYQTIITATN 336 >gi|170759251|ref|YP_001785339.1| recombination protein F [Clostridium botulinum A3 str. Loch Maree] gi|226737781|sp|B1L1K9|RECF_CLOBM RecName: Full=DNA replication and repair protein recF gi|169406240|gb|ACA54651.1| DNA replication and repair protein RecF [Clostridium botulinum A3 str. Loch Maree] Length = 364 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 166/362 (45%), Gaps = 39/362 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ + Sbjct: 3 IKSVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + ++ T+ E ++ DI+I + + + +N + I+ + EL +L + Sbjct: 63 WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P RI RR+FLD + I+ + ++ + +++ RN L +W + Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNR 171 Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230 I + Q+++ G I R + ++ L ++I + + K+ NF + LT Sbjct: 172 INDIIDVYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D FD + L + K RK D T IGPHR D V + T GS G Sbjct: 227 IKD--FDNAEKELLMLFKK----NRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + A +I N G P LLLD++ + LD +++ + + I + I TG Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPALLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339 Query: 351 DK 352 ++ Sbjct: 340 EE 341 >gi|254387093|ref|ZP_05002367.1| recombination protein F [Streptomyces sp. Mg1] gi|194345912|gb|EDX26878.1| recombination protein F [Streptomyces sp. Mg1] Length = 378 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 101/361 (27%), Positives = 160/361 (44%), Gaps = 22/361 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + D T FVG NG GKTN++EAI +L+ R +S A + Sbjct: 1 MHVSHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAIGYLAVLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R +G ++LE R+ R +R D L +R Sbjct: 61 VRMGAD---RAVIRAAVTQGERQQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD +V A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229 D S + +A G ++ R+++I + L E + P K S Sbjct: 177 RSMDLSTLDVWDQHLARAGAELLAQRLDLIATMLPLADKAYEQLAPGGGPLGLAYKSSAG 236 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 +D ++ AL E L D RK + TL+GPHR D+++ + + S Sbjct: 237 EAVDSGEARTREALYEVLLGALSDVRKQEIERGVTLVGPHRDDVLLRLGELPAK-GYASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + LA L+ + G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 296 GESWSYALALRLASYELL-RSEGAEPVLILDDVFAELDARRRERLAELVAP-GEQVLVTA 353 Query: 350 T 350 Sbjct: 354 A 354 >gi|307705894|ref|ZP_07642732.1| DNA replication and repair protein recF [Streptococcus mitis SK597] gi|307620555|gb|EFN99653.1| DNA replication and repair protein recF [Streptococcus mitis SK597] Length = 365 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 161/353 (45%), Gaps = 26/353 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEDQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQTIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--------HIKLSLTGFLDGKFD 237 ++ Q+ + G ++ R++ I L + + +K++F I + + K D Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLEA----FGRKKHFELSNQIEELSISYQSSVKITDKED 233 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L E + L R D + T IGPHR D + + + + GS G+ + +++ Sbjct: 234 -----LSESFKIALEKSRSRDLFKKNTGIGPHRDD--ISFYINGMDASFGSQGQHRSLVL 286 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 I LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T Sbjct: 287 SIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SVQTFITTT 338 >gi|239825588|ref|YP_002948212.1| recombination protein F [Geobacillus sp. WCH70] gi|259563662|sp|C5D330|RECF_GEOSW RecName: Full=DNA replication and repair protein recF gi|239805881|gb|ACS22946.1| DNA replication and repair protein RecF [Geobacillus sp. WCH70] Length = 374 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 100/390 (25%), Positives = 172/390 (44%), Gaps = 47/390 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +RNY S + F I +G+N GKTN++EAI L+ + R + D+ R Sbjct: 6 LSLKNYRNYESETIEFANNVNIILGENAQGKTNMMEAIYVLAMAKSHRTTNDKDLIR--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG + ++ LE ++ + +C N + + + + HL I Sbjct: 63 --WDEDYAKIEGKAMKKNGALSLELIISKKGKKAKC---NHIEQQRLSQYVGHLNIVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRF+D + + P + + +++L++ RN L T D + Sbjct: 118 PEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMLQTREQQDETV 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHI----KLSL 228 + Q+ L KI + R E + L +E +Q + P + K+ L Sbjct: 178 LDILTEQLIPLAAKITLKRYEFLLLLQKWAAPIHHEISRGLETLQIQYRPSVDVSEKIEL 237 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + ++ + + F +KE + R M TL GPHR D+ K + I GS Sbjct: 238 SRIIEA-YSEKFATIKEREIQ-----RGM------TLAGPHRDDIAFSVNGKDVQI-FGS 284 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+Q+ + I LA LI + G PILLLD++ + LD+ ++ L + Q F+T Sbjct: 285 QGQQRTTALSIKLAEIELIFSEIGDYPILLLDDVLSELDDFRQTHLLDTIRK-KVQTFVT 343 Query: 349 GT--DKSVFDSLNETAKFMRISNH--QALC 374 T + D + E A + S H LC Sbjct: 344 TTSIEGIEHDIIKEAAIYKVHSGHITAPLC 373 >gi|78221231|ref|YP_382978.1| recombination protein F [Geobacter metallireducens GS-15] gi|97180732|sp|Q39ZS1|RECF_GEOMG RecName: Full=DNA replication and repair protein recF gi|78192486|gb|ABB30253.1| DNA replication and repair protein RecF [Geobacter metallireducens GS-15] Length = 365 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 165/361 (45%), Gaps = 37/361 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 + IS FRN A+ + FD + + G NG GKT++LEAI L + FR A D+ + Sbjct: 6 IQISSFRNIAAAEIRFDRRFNVLHGANGQGKTSVLEAIYLLGTMKSFRLAKTPDLVSWNT 65 Query: 70 P-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 P + +A +G+ +I++ L ++ R R Q V R+ D + + Sbjct: 66 PHALLRGWAERDGVG--REIALYL-GKEGRKARVDQ--KPVTRLADFFGNVNAVVFSPEE 120 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--WCSSI 186 + SG + RRR+LDR +F+ D + ++ RL++ RN LL G + W Sbjct: 121 IAMARSGPDL-RRRYLDRAIFSGDLGYLLLHHEYHRLLKQRNALLKRGSREGLDIWT--- 176 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQK----------ENFPHIKLSLTGFLDGKF 236 Q+AE G ++ + R+ + + L+ + ++ PH L+ + + Sbjct: 177 -GQLAEAGTRLMVKRMGYLAEIEPLVQRFYREIAGGEEEAGLAYRPH--LTTPDLVSREG 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKV 294 + A LF + + + R T++GPHR D VD+ I HGS G+Q+ Sbjct: 234 TDALLA--------LFGAHEAEELRRGTTVVGPHRDD--VDFVLNGRVIRTHGSQGQQRS 283 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 ++ + +A + P+LLLD+IS+ LD + L + + Q+F+T TD S Sbjct: 284 FVLALKMAEIEYLERLNDAPPVLLLDDISSELDPQRNANLMTFLREKRMQVFITTTDVST 343 Query: 355 F 355 Sbjct: 344 L 344 >gi|108796985|ref|YP_637182.1| recombination protein F [Mycobacterium sp. MCS] gi|119866069|ref|YP_936021.1| recombination protein F [Mycobacterium sp. KMS] gi|123369971|sp|Q1BG58|RECF_MYCSS RecName: Full=DNA replication and repair protein recF gi|166220717|sp|A1U8S3|RECF_MYCSK RecName: Full=DNA replication and repair protein recF gi|108767404|gb|ABG06126.1| DNA replication and repair protein RecF [Mycobacterium sp. MCS] gi|119692158|gb|ABL89231.1| DNA replication and repair protein RecF [Mycobacterium sp. KMS] Length = 380 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 96/362 (26%), Positives = 172/362 (47%), Gaps = 33/362 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +++FR++A L + T+FVG NG GKTN++EA+ + + R AS A + R Sbjct: 3 VRHLTLTDFRSWARADLELEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+P + ST EG E +++ LE R+ + ++N +R E+ LR Sbjct: 63 VGAPRAVVSTIVVNEGRE----LAVDLEITTGRANKA-RLNRSPVRSPREVLGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FDS 180 P + G ERRR+LD + P D++R++R R LL D Sbjct: 118 APEDLALVRGDPGERRRYLDELATTRRPSIAGVRADYDRVIRQRTALLKSAAGARYRGDR 177 Query: 181 SWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 S ++ + +A G + AR ++++ L+ + E + P + + ++ Sbjct: 178 SVLETLDVWDGHLAAHGALLMAARADLVHHLAPEV-EKAYQLLAPGSRPAAI-----RYR 231 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHGS 288 S A +++ + + ++ +D+M+RR L+GPHR DL + D+ + + S Sbjct: 232 TSIDA-EDDVSAEYYEAALLDAMTRRRDAELERGVCLVGPHRDDLELRLGDQ-MAKGYAS 289 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + + LA L+ T G P+LLLD++ A LD +R AL + Q+ +T Sbjct: 290 HGESWSMALSLRLAAYELL-RTDGSDPVLLLDDVFAELDAARRRALAEVAAS-AEQVLVT 347 Query: 349 GT 350 Sbjct: 348 AA 349 >gi|325695750|gb|EGD37649.1| recombination protein F [Streptococcus sanguinis SK150] gi|328945164|gb|EGG39319.1| recombination protein F [Streptococcus sanguinis SK1087] Length = 364 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 87/368 (23%), Positives = 161/368 (43%), Gaps = 14/368 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTENDLLVS-GLLEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L Q L Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLQKIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GP R D + + + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPQRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD +++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-NIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQ 371 I Q Sbjct: 352 IFTIQQGQ 359 >gi|294138804|ref|YP_003554782.1| DNA replication and repair protein RecF [Shewanella violacea DSS12] gi|293325273|dbj|BAJ00004.1| DNA replication and repair protein RecF [Shewanella violacea DSS12] Length = 365 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 167/355 (47%), Gaps = 23/355 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I FRN AS +L+ + G NG GKT+ILEAI FL GR FR V + S Sbjct: 6 LHIETFRNIASAQLLPAEGINLIYGLNGSGKTSILEAIYFLGMGRSFRSHLSQRVIQ-HS 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA++ + I ++ + V+ I+ I+ + L + L I + P S Sbjct: 65 DDKLTLFAKLNVQNKESKIGLRRFRSGETEVK---IDGDKIKRLSTLAESLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCSSI 186 +F G RR+F+D F D ++ +R+++ RN+LL GY + + Sbjct: 122 FALLFDG-PKSRRQFIDWGAFHCDKSFHSAWVNVKRILKQRNQLLKNEAGYSQIQYWDTE 180 Query: 187 EAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +E+ I V +N L +I E++ + + +K+S T D K D Sbjct: 181 LVRYSEVVTDIRTQYVNSLNEQLKGIIGEFLPQVD---VKVSFTRGWDSKTD-------- 229 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 YA+ L D S T GPH++DL + + A S G+ K+++ + +A + Sbjct: 230 -YAQLLETQYPRDVSSGNTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQGK 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN 359 L+ I L+D++ + LD R L + +TD G+Q+F+T + ++ DSLN Sbjct: 288 LLKQQIDKNSIYLVDDLPSELDAKHRQLLLQQLTDTGAQVFVTAIEPAAILDSLN 342 >gi|82749781|ref|YP_415522.1| recombination protein F [Staphylococcus aureus RF122] gi|97180987|sp|Q2YUN8|RECF_STAAB RecName: Full=DNA replication and repair protein recF gi|82655312|emb|CAI79692.1| DNA replication and repair protein [Staphylococcus aureus RF122] Length = 370 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 161/371 (43%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L L LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELELLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D + +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRIS 368 + AK RI+ Sbjct: 354 IMNNAKLYRIN 364 >gi|152998558|ref|YP_001364239.1| recombination protein F [Shewanella baltica OS185] gi|166221863|sp|A6WH87|RECF_SHEB8 RecName: Full=DNA replication and repair protein recF gi|151363176|gb|ABS06176.1| DNA replication and repair protein RecF [Shewanella baltica OS185] Length = 360 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 104/362 (28%), Positives = 167/362 (46%), Gaps = 25/362 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LNI FRN S +L+ + G NG GKT+ILEAI FL GR FR V Sbjct: 6 LNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-ND 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + G + I ++ + VR I+ ++ + L + L I + P S Sbjct: 65 DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSI 186 +F G RR+F+D F DP + R+++ RN+LL G Y + + Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHADPLFYGAWTNVRRVLKQRNQLLRNGSSYSNIQFWDQE 180 Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + AE +I V+ +N L +I E++ + +K+S T D K D F L E Sbjct: 181 FVRYAEQVTEIRNHYVDSLNELLKGIIGEFLPSVD---VKVSFTRGWDSKTD--FAELLE 235 Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y++ L G T+ GPH++DL + A S G+ K+++ + +A Sbjct: 236 NQYSRDLATG--------HTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363 +L+ I L+D++ + LD R L + +TD G+Q+F+T D ++ DSL+ Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346 Query: 364 FM 365 M Sbjct: 347 RM 348 >gi|189501917|ref|YP_001957634.1| hypothetical protein Aasi_0498 [Candidatus Amoebophilus asiaticus 5a2] gi|189497358|gb|ACE05905.1| hypothetical protein Aasi_0498 [Candidatus Amoebophilus asiaticus 5a2] Length = 370 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 155/346 (44%), Gaps = 30/346 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYADVTRIG 68 L F+NY S+ L F Q VG NG GKTN+L+AI +LS + F ++ G Sbjct: 6 LRCYHFKNYDSIELSFATQLNCIVGANGAGKTNLLDAIHYLSLTKSAFNSIDSQNILHGG 65 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWLVP 127 T ++G D S ++ DR + LQ+N + + E I P Sbjct: 66 ------TQMSIQGHFFKNDKSYDVKCIVDRDQGKSLQVNGKAYKTMREHIGQFPIVLTTP 119 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYF--DSSWC 183 + S RR+F D ++ IDP + +I ++++++ RN L + G F D + Sbjct: 120 YDTELIRSTSEVRRKFFDAILCQIDPNYLHTLIQYQQILKHRNSFLKMSAGKFNVDRALI 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF---PHIKLSLTGFLDGKFDQSF 240 +S + Q+ L ++ AR ++ ++ + Q E F P I G+ D F Sbjct: 180 NSYDTQLLPLCKQLYAARKAFVDIFYPILQQ--QYEYFVDAPEI--IEMGYESDADDPGF 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ D K D +++RT++G HR D + + I GS G+QK ++ + Sbjct: 236 -------EQRFLDNIKEDLLAQRTILGIHRDDYVFMLNNYPIK-KFGSQGQQKSFIIALR 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 LA I G P+LLLD+I LDE + + R+V + Q F Sbjct: 288 LAQFACIHQALGCKPLLLLDDIFDKLDEQR---IERLVYLMAQQYF 330 >gi|21222284|ref|NP_628063.1| recombination protein F [Streptomyces coelicolor A3(2)] gi|256786616|ref|ZP_05525047.1| recombination protein F [Streptomyces lividans TK24] gi|289770509|ref|ZP_06529887.1| recombination protein F [Streptomyces lividans TK24] gi|548717|sp|P36176|RECF_STRCO RecName: Full=DNA replication and repair protein recF gi|436025|gb|AAA65213.1| putative [Streptomyces coelicolor A3(2)] gi|8247658|emb|CAB92996.1| DNA replication protein [Streptomyces coelicolor A3(2)] gi|289700708|gb|EFD68137.1| recombination protein F [Streptomyces lividans TK24] gi|1093582|prf||2104262B recF gene Length = 373 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 160/361 (44%), Gaps = 27/361 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G I+LE R+ R ++ D L +R Sbjct: 61 VRMGA---ERAVIRAQVRQGERQQLIELELNPGRANRARVNRSSQVKPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229 D S + +A G ++ R+++I ++ L E + P K S Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLIASVQPLADKAYEQLAPGGGPVALEYKPSAP 236 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 G + D L E+ L + RK + TL+GPHR DL++ + S Sbjct: 237 GEAHTRED-----LYEQLMAALAEARKQEIERGVTLVGPHRDDLLLKLGSLPAK-GYASH 290 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 291 GESWSYALALRLASFDLL-RAEGNEPVLVLDDVFAELDARRRERLAELVAP-GEQVLVTA 348 Query: 350 T 350 Sbjct: 349 A 349 >gi|120401032|ref|YP_950861.1| recombination protein F [Mycobacterium vanbaalenii PYR-1] gi|166220720|sp|A1T105|RECF_MYCVP RecName: Full=DNA replication and repair protein recF gi|119953850|gb|ABM10855.1| DNA replication and repair protein RecF [Mycobacterium vanbaalenii PYR-1] Length = 386 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 94/362 (25%), Positives = 169/362 (46%), Gaps = 27/362 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +++FR++A + L + T+FVG NG GKTN++EA+ + + R AS A + R Sbjct: 3 VRHLALTDFRSWARVELELEPGRTVFVGSNGFGKTNLIEALWYSATLGSHRVASDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST +G E +++ L+ R+ + ++N +R E+ LR Sbjct: 63 AGAERAVVSTIVVNDGRE----LAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FDS 180 P + G ERRR+LD + PR D+++++R R LL D Sbjct: 118 APEDLALVRGDPGERRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASGARYRGDR 177 Query: 181 SWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 +++ +A G ++ ARV+++N L+ + E + P + + + G Sbjct: 178 GALETLDVWNGHLASHGAQLISARVQLVNELAPEV-EKAYQLLAPGSRPAAIRYRSGVDV 236 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHGS 288 A +++F+ +D++SRR L+GPHR DL + D+ + S Sbjct: 237 VEAEAAAGNSDEEMFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQ-VAKGFAS 295 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + + LA L+ G P+LLLD++ A LD +R AL ++ Q+ +T Sbjct: 296 HGESWSMALALRLAAYELL-RVEGSDPVLLLDDVFAELDSARRQALAQVAA-TAEQVLVT 353 Query: 349 GT 350 Sbjct: 354 AA 355 >gi|311741697|ref|ZP_07715519.1| recombination protein F [Corynebacterium pseudogenitalium ATCC 33035] gi|311303218|gb|EFQ79299.1| recombination protein F [Corynebacterium pseudogenitalium ATCC 33035] Length = 391 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 98/380 (25%), Positives = 174/380 (45%), Gaps = 30/380 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FR++ L + T+FVG NG GKTNI+EAI + + R + A + R Sbjct: 3 VRDLDVRDFRSWPELNVQLGPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVSHDAPLVR 62 Query: 67 IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ S S A +G E + IK + QIN +R EL ++ Sbjct: 63 QGADSARVSITAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178 P + G RR +LD ++ + PR D++++++ RN LL GY Sbjct: 118 SPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASGSLRRGYS 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSL 228 DS +++ +AQ+A LG ++ AR+ +++AL I + E+ P H++ Sbjct: 178 DSDGAAALATLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYSGLAPESRPAHVEYKS 237 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 T +D + A+ +L R+ + +L+GPHR DL+++ D+ S Sbjct: 238 T--IDTSDREVLEAV---LLTELAAARQREIERGISLVGPHRDDLVLNLGDQPAK-GFAS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G P+L+LD++ A LD +R L + + + Sbjct: 292 HGETWSYAIALRLAEFNLLRQEGGSDPVLILDDVFAELDAKRRKQLVHLAAEAEQVLITA 351 Query: 349 GTDKSVFDSLNETAKFMRIS 368 D+ + +L ++ R+S Sbjct: 352 AVDEDLPGNLEPIVRY-RVS 370 >gi|90960994|ref|YP_534910.1| recombination protein F [Lactobacillus salivarius UCC118] gi|122449496|sp|Q1WVP2|RECF_LACS1 RecName: Full=DNA replication and repair protein recF gi|90820188|gb|ABD98827.1| DNA replication and repair protein [Lactobacillus salivarius UCC118] gi|300213942|gb|ADJ78358.1| DNA replication and repair protein recF [Lactobacillus salivarius CECT 5713] Length = 379 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 98/379 (25%), Positives = 164/379 (43%), Gaps = 38/379 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNY + + F Q + +G N GKTN+LE+I L+ R R ++ ++ Sbjct: 6 LELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREMV---- 61 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F A + G + KLE R + ++N + + + L + P Sbjct: 62 -TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNHLEKARLSQYIGQLNVILFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D ID + + ++ ++R RN+ L T+ D + Sbjct: 121 LALVKGAPSVRRRFIDMEFGQIDALYLHTLTEYRAVLRQRNKYLKELQTKKATDKVYLEI 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDGKFDQS 239 + Q++E G +I R+E + L +Y K + H++ L +S Sbjct: 181 LSEQLSESGSQIIFKRLEFLQELE----KYADKLHNQITQGKEHLQFQYESTLKEYQGKS 236 Query: 240 FCALK----EEYA----KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 LK E+Y K++F G TL+GPHR D+ DK + + +GS G+ Sbjct: 237 VLELKQSLIEQYKTMMDKEIFQG--------TTLLGPHRDDVRFMLNDKNVQV-YGSQGQ 287 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 Q+ + + LA L+ T PILLLD++ + LD ++ L + + + Q F+T Sbjct: 288 QRTAALSVKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQN-KVQTFLTTPG 346 Query: 352 KS-VFDSLNETAKFMRISN 369 S V L K RI N Sbjct: 347 LSDVAQQLINKPKIFRIDN 365 >gi|119773157|ref|YP_925897.1| recombination protein F [Shewanella amazonensis SB2B] gi|166221861|sp|A1S1H1|RECF_SHEAM RecName: Full=DNA replication and repair protein recF gi|119765657|gb|ABL98227.1| DNA replication and repair protein RecF [Shewanella amazonensis SB2B] Length = 360 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 98/353 (27%), Positives = 170/353 (48%), Gaps = 21/353 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I FRN S +L A + G NG GKT+ILEAI FL GR FR V + Sbjct: 6 LSIDAFRNIDSAQLAPGAGLNLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRVIQ-ND 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA EG G + I ++ D V+ I+ ++ + +L + L I + P S Sbjct: 65 ADCLTLFAVAEGQAGDSRIGLRRHRSGDTEVK---IDGEKVKRLSQLAEALPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 +F G S RR+F+D F + ++ R+++ RN+LL +G + + Sbjct: 122 FSLLFEGPSA-RRQFIDWGAFHASKQFHLAWMNTRRILKQRNQLLRDGA-SYEHIAFWDK 179 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCALKEE 246 ++ +++ R + + +L+ +++ + E P I++S T D K D S L+ + Sbjct: 180 ELIRYALEVTAIRNDYVGSLNG-VLKGIIGEFLPDVDIRVSFTRGWDSKTDFSEL-LQSQ 237 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L G T+ GPH++DL + + A S G+ K+++ + +A +L Sbjct: 238 YARDLAIG--------HTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQGKL 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSL 358 + I L+D++ + LD R L + + D G+Q+F+T + S + DSL Sbjct: 289 LKQQIDKHSIYLVDDLPSELDAKHRQLLLKELIDTGAQLFVTAIEPSAIVDSL 341 >gi|55821982|ref|YP_140424.1| recombination protein F [Streptococcus thermophilus LMG 18311] gi|81676637|sp|Q5M237|RECF_STRT2 RecName: Full=DNA replication and repair protein recF gi|55737967|gb|AAV61609.1| DNA repair and genetic recombination protein [Streptococcus thermophilus LMG 18311] Length = 366 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 94/368 (25%), Positives = 167/368 (45%), Gaps = 24/368 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++I FRNY+ + F IF+G N GKTNILEAI FL+ R R ++ D I Sbjct: 6 IDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHR--THLDKELI-- 61 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F ++ G+ ++ LE R ++N + + + H+ + P Sbjct: 62 -QFQQNSLKLNGIVHRHSGNLPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188 ++ G RR+F+D + I P + + ++ +++ RN L + D ++ S ++ Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDINFLSVLDE 180 Query: 189 QMAELGVKINIARVEMINALS-------SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 Q+A+ G ++ R+E I L S++ +++ +K+S + Q+ Sbjct: 181 QLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIER-----LKISYESNIPI---QNSK 232 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++E + L K D + T +GPHR DL D + + GS G+Q+ +++ + + Sbjct: 233 DIREAFLTILNQNHKRDIFKKNTGVGPHRDDLKFYIND--MNASFGSQGQQRSLILSLKM 290 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A LI T PILLLD++ + LD ++ L + D Q FMT T +L Sbjct: 291 AEIALIKKVTEEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPPN 349 Query: 362 AKFMRISN 369 K + N Sbjct: 350 LKTFLVKN 357 >gi|197302272|ref|ZP_03167331.1| hypothetical protein RUMLAC_00999 [Ruminococcus lactaris ATCC 29176] gi|197298703|gb|EDY33244.1| hypothetical protein RUMLAC_00999 [Ruminococcus lactaris ATCC 29176] Length = 370 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 158/359 (44%), Gaps = 32/359 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + +RNY L + FD + I GDN GKTNILEA+ + R D+ + Sbjct: 12 IRSLRLKNYRNYDLLDMSFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDRDMIQ 71 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + +G+ D+ +K S + + I+ + IR EL + + Sbjct: 72 FGHDEAHLEMVVEKKGLTFQIDMHLK-----KNSPKGIAIDRIPIRKASELFGIVHFVFF 126 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I RRRF+D + +D + + ++ R++ RN LL + Y + + Sbjct: 127 SPEDLNIIKEGPAGRRRFIDLELSQLDKIYLSNLTNYNRIINQRNALLKDIYNHQNLAET 186 Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ Q+AE G ++ R + I ++ +I + I LTG GK + C Sbjct: 187 LDIWDMQLAEYGTRVLERRQQFIEQVNGIISD---------IHYRLTG---GK--ERICL 232 Query: 243 LKEE------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVV 295 E + L R D + T +GPHR D+ + + I GS G+Q+ Sbjct: 233 SYESGTGGRSLEEALKRNRDRDLRMKSTSVGPHRDDIC--FLSGELDIRKFGSQGQQRTT 290 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + LA L+ P+LLLD++ + LD+ ++N L + DI + + TG D+ V Sbjct: 291 ALSLKLAEIELVKQMIKDTPVLLLDDVLSELDKSRQNYLLDSIHDIQTVVTCTGLDEFV 349 >gi|324989568|gb|EGC21514.1| recombination protein F [Streptococcus sanguinis SK353] Length = 364 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEAI FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L L Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLHQIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYRFSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD ++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRISNHQALC 374 K I Q + Sbjct: 351 KIFTIQQGQIMS 362 >gi|282863317|ref|ZP_06272376.1| DNA replication and repair protein RecF [Streptomyces sp. ACTE] gi|282561652|gb|EFB67195.1| DNA replication and repair protein RecF [Streptomyces sp. ACTE] Length = 376 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 99/358 (27%), Positives = 158/358 (44%), Gaps = 22/358 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + D T+FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARAEVPLDPGVTVFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R +G I+LE R+ R +R D L +R Sbjct: 61 VRMGA---ERAVVRAAVTQGERSQLIELEINPGRANRARVNRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD +V A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFL 232 D S + + +G ++ R+++I L L + V P + L + Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYADVAPGGGP-VALEYRSSV 235 Query: 233 DGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + S L E+ L + RK + TL+GPHR DL++ + S G Sbjct: 236 GPEVGPSRTREELYEQVMAALAEARKQEIERGVTLVGPHRDDLVLGLRGMPAK-GYASHG 294 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 E + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 295 ESWSYALALRLASYDLLRG-EGNEPVLVLDDVFAELDTRRRERLAELVAP-GEQVLVT 350 >gi|239637289|ref|ZP_04678276.1| DNA replication and repair protein RecF [Staphylococcus warneri L37603] gi|239597126|gb|EEQ79636.1| DNA replication and repair protein RecF [Staphylococcus warneri L37603] Length = 371 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 163/372 (43%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + + + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTIDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FDSEYAKIEGELNYRHGTMPLTMFITKRGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G + RRRF+D + I + + ++ +++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPLIRRRFIDMELGQISAVYLNDLSQYQHILKQKNNYLKQLQIGNNTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + + Q AE +K+ + R I L L L+L KF D Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELEQLAQPIHAGITNEREALALKYLPSLKFSHQD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 QS + EE L D + + L GPHR DL + + +GS G+Q+ + Sbjct: 236 QSESEMLEEILTLLNDNLQREKDRGVCLFGPHRDDLGFN-VNGMDAQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRIS 368 + AK RI+ Sbjct: 354 EIMNNAKLYRIN 365 >gi|78043999|ref|YP_361489.1| DNA recombination/replication protein RecF [Carboxydothermus hydrogenoformans Z-2901] gi|123575248|sp|Q3A8P5|RECF_CARHZ RecName: Full=DNA replication and repair protein recF gi|77996114|gb|ABB15013.1| DNA recombination/replication protein RecF [Carboxydothermus hydrogenoformans Z-2901] Length = 353 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/346 (25%), Positives = 157/346 (45%), Gaps = 21/346 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNY L + F + G NG GKTN++EAI +L G+ FR + + R G+ Sbjct: 6 LQLLNFRNYEELLIDFSPGKILIYGANGQGKTNLIEAIYYLVIGKSFRGKDNS-LIRFGA 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S F A++ + ++ + ++ Q ++ L L P Sbjct: 65 ES-FQIGAKISKNGQKTTLGVEYSVKGKFFLKNGQKQKSFSSILGNLKGVL----FTPDE 119 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 IF G RR+ LD + + +I +++++ +N LL + + + + + Sbjct: 120 PVIFFGFPANRRKALDLFLAQTSKTYLLNLIYYQKVLTNKNALLKQVWNVDNLIEAWNYK 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +AE G +I R + + L+ +I E + L FL GK + S+ + + Sbjct: 180 LAEFGAEIIKEREKCLKILNDIINE---------LNAQLR-FLPGKIEASYKTSGADDKE 229 Query: 250 KLFDGRKM----DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 K+F+ K + ++ L GPHR DL + + I GS G++K L+ L+ A Sbjct: 230 KIFELLKQKYTEEKDKKQALFGPHRDDLNFYVNGRDLKI-FGSQGQKKGALLLFKLSQAV 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 ++ +G P++LLD++ + D++KR AL Q+F+T T+ Sbjct: 289 YMAKVSGEKPVVLLDDLYSEFDKEKREALEGFFLKYSDQVFITATE 334 >gi|257054093|ref|YP_003131925.1| recombination protein F [Saccharomonospora viridis DSM 43017] gi|256583965|gb|ACU95098.1| DNA replication and repair protein RecF [Saccharomonospora viridis DSM 43017] Length = 390 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 105/377 (27%), Positives = 170/377 (45%), Gaps = 37/377 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +++FR++ + L T+ VG NG GKTN+LEAI ++S R A+ A + R Sbjct: 3 LRHLQVTDFRSWEHVDLPLAQGPTVLVGPNGQGKTNLLEAIGYISTLSSHRVATDAPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G A V EG E ++++LE R+ R +IN + ++ LR Sbjct: 63 HGCDRALVRAAVVNEGRE----LTVELEIAPGRANRA-RINRGAVGKPRDVLGILRTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL------------ 173 P + G ERRRFLD ++ PR+ +++R++R RN LL Sbjct: 118 SPEDLALVRGDPSERRRFLDDLLVQRAPRYAGVRSEYDRVLRQRNALLKSVGRAGGRRGA 177 Query: 174 ---TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPH---I 224 T+ Y S+ + +A G ++ AR+ ++ L + V ++ P Sbjct: 178 REETDPYALST-LQVWDNHLASAGAELLAARLNLVAELGPYVASSYADVAPDSRPARIAY 236 Query: 225 KLSLTGFL-------DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 + SL G L DG + S L E + L + R+ + +LIGPHR DL + Sbjct: 237 RSSLGGALPEGWGTPDGP-EASTEQLGEILLRVLGEVRETELERGVSLIGPHRDDLEL-M 294 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 +A + S GE + + LA RL+ N +G P+LLLD++ A LD +R L + Sbjct: 295 LGEAPAKGYASHGESWSFALALRLASYRLLRNESGGEPVLLLDDVFAELDSRRRARLAEV 354 Query: 338 VTDIGSQIFMTGTDKSV 354 T + D+ V Sbjct: 355 ATKAEQVLVTAAVDEDV 371 >gi|23097459|ref|NP_690925.1| recombination protein F [Oceanobacillus iheyensis HTE831] gi|51316469|sp|Q8EU85|RECF_OCEIH RecName: Full=DNA replication and repair protein recF gi|22775682|dbj|BAC11960.1| DNA repair and genetic recombination [Oceanobacillus iheyensis HTE831] Length = 369 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/371 (23%), Positives = 168/371 (45%), Gaps = 16/371 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ +RNY L + FD Q + +G+N GKTN++EAI LS R R ++ + Sbjct: 3 IEKLELTNYRNYDQLEIAFDDQINVIIGENAQGKTNLMEAIYVLSFARSHRTPREKELIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG + SI L+ + ++N + + + + + Sbjct: 63 -----WDKDYAKIEGRITKRNQSIPLQISITSKGKKAKVNHLEQHRLSDYIGSVNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P I G RRRF+D + I P + + ++++++ RN LL + D++ Sbjct: 118 PEDLTIVKGAPQIRRRFMDMELGQIQPTYIYHLAQYQKVLKQRNHLLKQLQRKPNSDTTM 177 Query: 183 CSSIEAQMAELGVKINIAR----VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + Q+ E I + R +E++ + I + +E +++ + ++ D Sbjct: 178 LEVLTDQLIE-HASILLERRFIYLELLRKWAQPIHRGISRE-LEQLEIQYSPSIEVSEDA 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + Y K + ++ + TL GPHR DLI K + +GS G+Q+ + Sbjct: 236 NKEKIGNIYQMKFAEVKQKEIERGTTLAGPHRDDLIFFVNGKDVQ-TYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 I LA LI G PILLLD++ + LD+ +++ L + T + + + Sbjct: 295 IKLAEIELIYQEVGEYPILLLDDVLSELDDYRQSHLLNTIQGKVQTFVSTTSVEGIHHET 354 Query: 359 NETAKFMRISN 369 + A+ R+++ Sbjct: 355 LQQAELFRVTD 365 >gi|138893683|ref|YP_001124136.1| recombination protein F [Geobacillus thermodenitrificans NG80-2] gi|196249897|ref|ZP_03148593.1| DNA replication and repair protein RecF [Geobacillus sp. G11MC16] gi|166220711|sp|A4IJ87|RECF_GEOTN RecName: Full=DNA replication and repair protein recF gi|134265196|gb|ABO65391.1| RecF [Geobacillus thermodenitrificans NG80-2] gi|196210773|gb|EDY05536.1| DNA replication and repair protein RecF [Geobacillus sp. G11MC16] Length = 372 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 161/368 (43%), Gaps = 25/368 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L ++ +RNY L FD I +G+N GKTN++EAI L+ + R + D+ R Sbjct: 6 LTLTNYRNYEHETLSFDQGVNIILGENAQGKTNMMEAIYVLAMAKSHRTTNDKDLIR--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG S+ LE ++ + RC N + + + + HL + Sbjct: 63 --WNEDYAKIEGRAEKRSGSLALELTISKKGKKARC---NHIEQQRLSQYVGHLNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRF+D + + P + + +++L++ RN L D + Sbjct: 118 PEDLNLVKGSPQVRRRFIDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQAREQHDEAV 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIM----EYVQKENFPHIKLSLTGFLDGKFDQ 238 + Q+ L KI + R + + L M E + HI+ + +D Sbjct: 178 LDVLTEQLMVLAAKITLRRRQFLALLEQWAMPIHHEISRGAERLHIRYEPS--VDVSEKA 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E Y++ R+ + TL+GPHR D+ K + GS G+Q+ + Sbjct: 236 ELSRIVEAYSETFAAMREREIQRGTTLVGPHRDDIAFIVNGKNVQ-TFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFD 356 + LA LI + G PILLLD++ + LD+ ++ L + Q F+T T D D Sbjct: 295 VKLAEIELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRK-KVQTFVTTTSIDGIKHD 353 Query: 357 SLNETAKF 364 + E A + Sbjct: 354 LIQEAAIY 361 >gi|145294046|ref|YP_001136867.1| recombination protein F [Corynebacterium glutamicum R] gi|166220708|sp|A4Q9S2|RECF_CORGB RecName: Full=DNA replication and repair protein recF gi|140843966|dbj|BAF52965.1| hypothetical protein [Corynebacterium glutamicum R] Length = 394 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 106/393 (26%), Positives = 177/393 (45%), Gaps = 45/393 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + ++R++ L++ + T+F+G NG GKTNI+EAI +L+ R +S A + Sbjct: 1 MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R + + S A +G E A + IK + S +N +R EL ++ Sbjct: 61 VRAHAENARVSAVAVNQGRELAAHLLIKPHAANQAS-----LNRTKVRTPRELLGVVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174 P + G ERRR+LD ++ PR D++++++ RN LL Sbjct: 116 LFAPEDLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQRNALLKTATIALRRG 175 Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME---YVQKENFPH---- 223 EG S + + Q+A LG ++ AR ++N L I E + E+ P Sbjct: 176 YGTEEGAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNY 235 Query: 224 ---IKLSLTGFLDGKFDQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 I L+ F +FD L E A K R+ + +L+GPHR D+ + Sbjct: 236 KTTIDQGLSQF--SEFDAGIIEATLLTELAAK----RQREIERGSSLVGPHRDDVDLMLG 289 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFAPILLLDEISAHLDEDKRNALFRI 337 D+ S GE + + +A L+ S+ T PIL+LD++ + LD +R L I Sbjct: 290 DQPAK-GFASHGETWSFALSLRIAEFNLLKSDDTD--PILILDDVFSELDAGRRQKLVGI 346 Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370 ++ Q+ +T +V D L E K + + H Sbjct: 347 AQEV-EQVLITA---AVHDDLPENLKKVLTAQH 375 >gi|320009753|gb|ADW04603.1| DNA replication and repair protein RecF [Streptomyces flavogriseus ATCC 33331] Length = 376 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 98/360 (27%), Positives = 159/360 (44%), Gaps = 22/360 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R +G I+LE R+ R +R D L +R Sbjct: 61 VRMGAE---RAVVRAAVTQGERSQLIELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFL 232 D S + + +G ++ R+++I L L + V P + L + Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYADVAPGGGP-VTLEYRSSV 235 Query: 233 DGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + + L E+ L RK + TL+GPHR DL++ + S G Sbjct: 236 GDEVEPARTREELYEQVMAALVQARKQEIERGVTLVGPHRDDLVLGLRGMPAK-GYASHG 294 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 E + + LA L+ T G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 295 ESWSYALALRLASYDLL-RTEGNEPVLVLDDVFAELDARRRERLAELVAP-GEQVLVTAA 352 >gi|228994211|ref|ZP_04154111.1| DNA replication and repair protein recF [Bacillus pseudomycoides DSM 12442] gi|228765663|gb|EEM14317.1| DNA replication and repair protein recF [Bacillus pseudomycoides DSM 12442] Length = 375 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 172/380 (45%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 IKELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDYGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQRLSQYIGEMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGTKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL DK + + GS G+Q+ Sbjct: 234 SMGLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNDKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L + AK + ++N C Sbjct: 352 HETLKQ-AKTIHVTNGTVDC 370 >gi|228995400|ref|ZP_04155072.1| DNA replication and repair protein recF [Bacillus mycoides Rock3-17] gi|229003014|ref|ZP_04160873.1| DNA replication and repair protein recF [Bacillus mycoides Rock1-4] gi|228758242|gb|EEM07428.1| DNA replication and repair protein recF [Bacillus mycoides Rock1-4] gi|228764353|gb|EEM13228.1| DNA replication and repair protein recF [Bacillus mycoides Rock3-17] Length = 375 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 170/376 (45%), Gaps = 16/376 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 IKELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDYGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQRLSQYIGEMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240 Q+ E G KI R E ++ L + +++ +D Sbjct: 178 LDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDL 237 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +KE Y + ++ + TLIGPHR DL DK + + GS G+Q+ + + Sbjct: 238 SKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNDKNVQV-FGSQGQQRTTALSLK 296 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSL 358 LA LI + PILLLD++ + LD+ +++ L + Q F+T T D ++L Sbjct: 297 LAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIEHETL 355 Query: 359 NETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 356 KQ-AKTIHVTNGTVDC 370 >gi|323341104|ref|ZP_08081352.1| recombination protein F [Lactobacillus ruminis ATCC 25644] gi|323091525|gb|EFZ34149.1| recombination protein F [Lactobacillus ruminis ATCC 25644] Length = 386 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 93/360 (25%), Positives = 163/360 (45%), Gaps = 32/360 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + FRNY +L F + +G+N GKTN+LE+I L+ + R + ++ Sbjct: 1 MRLSNLKLKNFRNYHETKLEFSPNINVLIGENAQGKTNLLESIYVLAMTKSHRTTNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F +EG+ +++L + + ++N + + + L + Sbjct: 61 IEFSEKSAF-----LEGIVEKKTGNLRLSLSLSKKGKTARVNSLETPRLSQYIGKLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180 P + G RRRF+D ID + + + ++R RN +L T+ D Sbjct: 116 FSPEDLSLVKGSPAVRRRFIDMEFGQIDAVYLYELTRYRTILRDRNVYLKQLQTKQSTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSL--IME---YVQKENFPHIKLSLTGFLDG- 234 + + Q+A+ G KI + R+E + L + I+ QKEN K T +D Sbjct: 176 VYLEVLTEQLAKSGAKIILKRLEFLEELENYAKILHADITQQKENLT-FKYKCTASIDDL 234 Query: 235 KFDQSFCA--LKEEYA----KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + +Q LKE + K++F G TLIGPHR D+ K + +GS Sbjct: 235 EMNQDAIEIRLKETFETIVDKEIFQG--------TTLIGPHRDDVSFKVNGKNVQ-TYGS 285 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+Q+ + + LA L+ TG P+LLLD++ + LD +++ L + + D Q F+T Sbjct: 286 QGQQRTTALAVKLAEIDLMRAKTGEYPVLLLDDVLSELDGERQTHLLKAIQD-KVQTFLT 344 >gi|227485760|ref|ZP_03916076.1| possible recombination protein F [Anaerococcus lactolyticus ATCC 51172] gi|227236315|gb|EEI86330.1| possible recombination protein F [Anaerococcus lactolyticus ATCC 51172] Length = 367 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 161/355 (45%), Gaps = 31/355 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + FRNY + F+ IF+GDN GKTN+LE+ +L+ F++ D+ + Sbjct: 3 IQDIKLYNFRNYFYESVNFNESTNIFIGDNAQGKTNLLESCYYLANATSFKKLRDKDIIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + G K+ R D + + + +N+V + +L R+ Sbjct: 63 FGQEKM-----EISGTIRKGRSFKKVLIRVDGTDKNIFVNEVEYKRNKDLKSLFRLVLFT 117 Query: 127 PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSW 182 P ++ I G ++ RR LD ++ +ID + R D+++++ RN+LL YF Sbjct: 118 PEDLNIIKEGPNL-RRELLDEIIASIDFSYARVKKDYDKILFARNKLLKNRNSSYF-KEQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + + + G KI +R++ + + EY Q +F + DGK Sbjct: 176 LDAFDKSLVKEGYKIYKSRIKFV----KFVEEYAQ--DFQN------ALTDGKEKLEIDY 223 Query: 243 LK-------EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 L +EY KK + R+ D T G HR D+I+ K T S G+Q+ Sbjct: 224 LPDISAESLDEYYKKFLEKREDDLRYLSTQAGVHRDDIIIKINGKN-TRLFASQGQQRSA 282 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 ++ I LA +L+ +G ++LLD++ + LDE + L ++D + I T T Sbjct: 283 IINIKLAEVKLVRQISGDRAVILLDDVFSELDETRSKFLLENLSDYQTIITATNT 337 >gi|189423085|ref|YP_001950262.1| recombination protein F [Geobacter lovleyi SZ] gi|226737802|sp|B3E8N9|RECF_GEOLS RecName: Full=DNA replication and repair protein recF gi|189419344|gb|ACD93742.1| DNA replication and repair protein RecF [Geobacter lovleyi SZ] Length = 368 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 166/368 (45%), Gaps = 22/368 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +K + + ++RN + A+H T+ G NG GKTN LE++ L R FR A D+ Sbjct: 3 LKQVWLEQYRNIQKA-CIQPARHLTVLYGRNGQGKTNFLESLYLLGNARPFRAAKVPDLI 61 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 GS S A V G+ A + + + S R + I+D + +L+ L + Sbjct: 62 SHGSRS-----AAVRGLVLAAGVESTIVLHVENSTRRVTIDDKAVHRAADLHGKLAVVVF 116 Query: 126 VPSMDRIFSGLSME-RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P D L E RRR+LDR ++A D + R+++ RN LL + Sbjct: 117 SPD-DTAMVKLGPETRRRYLDRSLYASDAAFLSDYHTYYRILKQRNALLKTN--QQAGLD 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 Q+A G+++ R + L+ L+ + Q+ K+S+ D C + Sbjct: 174 LWTEQLATAGIRLMQHRQHYTSRLNQLLQQKYQQIAGEQEKVSVVYQPD-----VICTAE 228 Query: 245 EEYAKKLFD----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E + L + + D + T GPHR DL+ D+ + + GS G+Q+ ++ + Sbjct: 229 ENGTELLLNVFRNQHEQDLRYKSTGRGPHRDDLLFSIGDRPLK-SFGSQGQQRSFVLALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359 +A + T G P+LLLD+I++ LD ++ L V Q+ +T TD + F L Sbjct: 288 MAELDHLQETFGEMPLLLLDDIASELDRERMTNLLSYVRQREVQVLITTTDVTPFLPVLQ 347 Query: 360 ETAKFMRI 367 + +K R+ Sbjct: 348 QDSKLFRV 355 >gi|288554609|ref|YP_003426544.1| recombination protein F [Bacillus pseudofirmus OF4] gi|288545769|gb|ADC49652.1| recombination protein F [Bacillus pseudofirmus OF4] Length = 371 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 162/355 (45%), Gaps = 24/355 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I +FRNY + L FD + +F+G+N GKTN +EAI L+ + R + ++ R Sbjct: 3 IKSLLIRQFRNYERVELEFDERMNVFIGENAQGKTNTIEAIYVLALAKSHRTSKDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + FA+V+G I+L+ + +++N + R + E + + Sbjct: 63 -----WNDEFAKVQGQVQRQSGPIELDLVISTKGKKVKLNGLEQRKLSEYVGAVNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183 P + G RRRF+D + I P + + ++++++ RN LL + G Sbjct: 118 PEDLNLVKGSPQLRRRFIDMELGQISPVYLHHLGLYQKVLQQRNFLLKDLQIGKGSKDML 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENFPHIKLSLTGFLDGKFDQ 238 + Q+ EL V+I R + L E + KE I L+ + Sbjct: 178 DILTDQLIELAVQITKRRFVFLGQLQKWAEEIHRDISRAKETLKIIYKPSCDVLE---EM 234 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVV 295 +KE + + ++ +K ++R TL GPHR DL +V+ D +GS G+Q+ Sbjct: 235 DMPKMKEVFIET-YENKKQREIARGVTLFGPHRDDLGFLVNEHD---VQTYGSQGQQRTT 290 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA LI G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 291 ALSVKLAEIELIHAEVGEYPILLLDDVLSELDDYRQTHLLHTIGQ-RVQTFVTTT 344 >gi|227873173|ref|ZP_03991464.1| recombination protein RecF [Oribacterium sinus F0268] gi|227841004|gb|EEJ51343.1| recombination protein RecF [Oribacterium sinus F0268] Length = 360 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 93/357 (26%), Positives = 165/357 (46%), Gaps = 28/357 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RN L+L ++ I GDN GKTN+LEAI F S G+ FR ++ Sbjct: 3 IESIELQNYRNIEKLKLPLGEKNNILYGDNAQGKTNLLEAIFFGSTGKSFRFCKDKELIH 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + + +G+ DI +K + + I+ ++ EL I Sbjct: 63 FGAEEAHLKMILKKKGISHRIDIHLK-----KNKSKGVAIDGFPVKKSSELFGLGNIIIF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + ERRRF+D + +D + + + ++++ RN+LL E YF + Sbjct: 118 SPEDLSLIKNGPKERRRFIDLELCQLDKIYLYHLSMYNKVLQQRNKLLKELYFRPKLEET 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCAL 243 + A EL + +M+ +L +E ++K EN + G + GK ++ + Sbjct: 178 LFAWDEEL-----VKHGKMVISLRRDFVENLRKKVEN-------IHGEISGKREELLLSY 225 Query: 244 KEEYAKKLFD-----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLV 297 +E +++ F R+ + + TL GPHR DL + I H GS G+Q+ + Sbjct: 226 EENVSEENFSLQLEKNREAEKKQQTTLSGPHRDDL--SFQINGQDIRHFGSQGQQRTAAL 283 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + LA L+ PILLLD++ + LD+ ++N L + ++ S I TG ++ V Sbjct: 284 SLKLAEIDLVRERIQDNPILLLDDVFSELDQKRQNFLLEQLGNLQSLITCTGLEELV 340 >gi|294496879|ref|YP_003560579.1| DNA replication and repair protein RecF [Bacillus megaterium QM B1551] gi|295702246|ref|YP_003595321.1| DNA replication and repair protein RecF [Bacillus megaterium DSM 319] gi|294346816|gb|ADE67145.1| DNA replication and repair protein RecF [Bacillus megaterium QM B1551] gi|294799905|gb|ADF36971.1| DNA replication and repair protein RecF [Bacillus megaterium DSM 319] Length = 372 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/352 (24%), Positives = 161/352 (45%), Gaps = 17/352 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + ++ +RNY + F+ + + +G+N GKTN++E+I LS + R ++ ++ + Sbjct: 3 IKEITLTNYRNYTKTTIPFENKVNVILGENAQGKTNVMESIFVLSMAKSHRTSNDKELIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + VE G + + + T+ ++ + N + + + + + Sbjct: 63 WDC-EYAKLSGIVEKHRGPVTLDLVISTKGKKA----KYNHIEQKKLSQYIGSINTVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RR+F+D + + P + + ++++++ RN+ L T+ D S Sbjct: 118 PEDLNLVKGSPQVRRKFIDMEIGQVSPVYMHDLSRYQKILQQRNQYLKQLQTKKQTDLSL 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQS 239 + Q++E+ KI R E + L E + K + +K+ +D D Sbjct: 178 LDVLTLQLSEMAAKILKKRFEFLQLLQQW-AEPIHKGISRDLETLKIEYKNSIDVSEDAD 236 Query: 240 FCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E Y +K FD K + R TL GPHR DL+ Y ++ GS G+Q+ + Sbjct: 237 LSKMLEAYHQK-FDKIKSREIDRGVTLAGPHRDDLLF-YVNEKDVQTFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T Sbjct: 295 LKLAEIELIHQEVGEYPILLLDDVLSELDDFRQSHLLNTIQG-KVQTFVTTT 345 >gi|320162555|ref|YP_004175780.1| DNA replication and repair protein RecF [Anaerolinea thermophila UNI-1] gi|319996409|dbj|BAJ65180.1| DNA replication and repair protein RecF [Anaerolinea thermophila UNI-1] Length = 413 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 169/385 (43%), Gaps = 39/385 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+++ FR +A L + + + VG+N GKT++LEAI +L+ + + Sbjct: 1 MHLTHLSLTHFRLFARLDMELPRRTLLLVGENAQGKTSLLEAIYYLATFTSLHASLDRQI 60 Query: 65 TRIGSPSFFSTFARVEG---MEGLA---DISIKLETR---DDRSVRCLQINDVVIRVVDE 115 + AR+ G EG A ++ + LE R + D V R E Sbjct: 61 VSFAAAREPLAVARIVGDFEREGRAHRLEVRLILEANGGFPPARFRKEILLDGVKRTAQE 120 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RL 172 L +P M I G ERRR+L+ + P + + + D+ R + RN +L Sbjct: 121 ATGALTAVMFLPDMTHILDGSPEERRRYLNLALAQAVPGYAQALTDYTRALEQRNALLKL 180 Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL-------------IMEYV--- 216 L E D + + + +AE G I AR+ I L L ++++V Sbjct: 181 LQERSADPAQLAYWDTLLAEKGAFILHARIAAIAELERLAARIHNRLTGGTEVLQFVYLP 240 Query: 217 QKENFPHIKLS-----LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 + PH + LT G F S L+E + ++L D R + T IGPHR Sbjct: 241 AYDPLPHPEGQYALPILTPMDRGGF--SLTQLREGFLQRLSDLRSEEIARGVTTIGPHRD 298 Query: 272 DLIVDYCDKAITIA-HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 +L + + + +GS G+ + L+ + +A AR + TG PILLLDEI A LD+ + Sbjct: 299 EL--RFLSNGVDLGDYGSRGQLRTTLLSLKMAEARWMKERTGEFPILLLDEILAELDDRR 356 Query: 331 RNALFRIVTDIGSQIFMTGTDKSVF 355 R L + D Q +T TD +F Sbjct: 357 RADLLDALDDF-EQAVLTTTDLKLF 380 >gi|71280559|ref|YP_266785.1| DNA replication and repair protein RecF [Colwellia psychrerythraea 34H] gi|123634297|sp|Q48AS5|RECF_COLP3 RecName: Full=DNA replication and repair protein recF gi|71146299|gb|AAZ26772.1| DNA replication and repair protein RecF [Colwellia psychrerythraea 34H] Length = 377 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 168/354 (47%), Gaps = 30/354 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L FRN +S+ + + F+G+NG GK+++LEA+ FL G+ FR +++ Sbjct: 6 LTTYNFRNLSSVAIDLHPKLNFFIGNNGSGKSSLLEALFFLGHGKSFR------TSKVEH 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + + T V ++ + D+ + L V ++IN + EL K++ + + P Sbjct: 60 LACYETDNFVVSIKDVNDLQLGLSKNLQTGVTLIKINGERHARLSELAKNIAVQIVTPES 119 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-------TEGYFDSSW 182 ++F G ERRRF++ +F + ++ +F R+++ RN + T Y+ + Sbjct: 120 FKLFFGGPKERRRFIELGMFHVKHDSSKQWREFNRVLKQRNACIRHNLDKATFDYWTGLF 179 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFDQSFC 241 C + Q+AE+ R + I L S + Y + P+I +T +L G Sbjct: 180 CQ-LSEQVAEV-------RSQYITNLISE-LPYWLEILLPNIADKVTVQYLQG------W 224 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 K+ L D + + ++ G H+ D+ +A+ + S G+QK+ L+ + Sbjct: 225 PQKKNLMDSLNDSHEREQAFGYSIYGAHKFDVKFLIAKQALE-SQLSRGQQKLFLLALTF 283 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 A A+LI+ PILL+D+I A LD + R +L + ++ + Q+ +T ++ V Sbjct: 284 AQAKLIARVNRVKPILLIDDIGAELDINSRESLSQALSILDCQVIITAIEEGVL 337 >gi|89074700|ref|ZP_01161158.1| recombination protein F [Photobacterium sp. SKA34] gi|89049464|gb|EAR55025.1| recombination protein F [Photobacterium sp. SKA34] Length = 360 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 166/363 (45%), Gaps = 17/363 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN AS L A VG NG GKT++LEAI +L GR FR + V R Sbjct: 6 LMVHDFRNIASCDLALAAGFNFLVGPNGSGKTSVLEAIHYLGHGRSFRSHLTSRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV + + I + + D + ++I + + +L + L + + P Sbjct: 66 AELF-IHGRVVDNQTQLMLPIGINKKRDGTTD-VKIAGESNQKLAQLAQILPLQLITPEG 123 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187 + G RR F+D VF ++P+ +RL + RN LL Y + S+ + Sbjct: 124 FDLLIGGPKYRRAFIDWGVFHVEPKFYHAWARLKRLTKQRNALLKTARSYRELSYW---D 180 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 ++A L +I++ R + I+A+ E Q P + L GF G ++ Y Sbjct: 181 QELALLAEEISVWRKDYISAVKEKAAEIFQV-FLPEFDIQL-GFYRGWEKET------PY 232 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 A+ L + D T+ GPH++DL + + S G+ K+++ + LA + Sbjct: 233 AELLQRNFERDCQLGYTVSGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGLHL 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366 + TG I L+D+ ++ LD +R L + + + +Q+F++ +D V D L+E K Sbjct: 292 TEATGKQCIYLIDDFASELDSQRRALLAQRLKETNAQVFISAISDDQVADMLDENGKLFH 351 Query: 367 ISN 369 + + Sbjct: 352 VEH 354 >gi|227891672|ref|ZP_04009477.1| recombination protein F [Lactobacillus salivarius ATCC 11741] gi|227866475|gb|EEJ73896.1| recombination protein F [Lactobacillus salivarius ATCC 11741] Length = 379 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/379 (25%), Positives = 164/379 (43%), Gaps = 38/379 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNY + + F Q + +G N GKTN+LE+I L+ R R ++ ++ Sbjct: 6 LELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREMV---- 61 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F A + G + KLE R + ++N + + + L + P Sbjct: 62 -TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNYLEKARLSQYIGQLNVILFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D ID + + ++ ++R RN+ L T+ D + Sbjct: 121 LALVKGAPSVRRRFIDMEFGQIDALYLHALTEYRAVLRQRNKYLKELQTKKATDKVYLEI 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDGKFDQS 239 + Q++E G +I R+E + L +Y K + H++ L +S Sbjct: 181 LSEQLSESGSQIIFKRLEFLQELE----KYADKLHNQITQGKEHLQFQYESTLKEYQGKS 236 Query: 240 FCALK----EEYA----KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 LK E+Y K++F G TL+GPHR D+ DK + + +GS G+ Sbjct: 237 VLELKQSLVEQYKTMMDKEIFQG--------TTLLGPHRDDVRFMLNDKNVQV-YGSQGQ 287 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 Q+ + + LA L+ T PILLLD++ + LD ++ L + + + Q F+T Sbjct: 288 QRTAALSVKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQN-KVQTFLTTPG 346 Query: 352 KS-VFDSLNETAKFMRISN 369 S V L K RI N Sbjct: 347 LSDVAQQLINKPKIFRIDN 365 >gi|126432617|ref|YP_001068308.1| recombination protein F [Mycobacterium sp. JLS] gi|166220716|sp|A3PSE0|RECF_MYCSJ RecName: Full=DNA replication and repair protein recF gi|126232417|gb|ABN95817.1| DNA replication and repair protein RecF [Mycobacterium sp. JLS] Length = 380 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 96/362 (26%), Positives = 171/362 (47%), Gaps = 33/362 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +++FR++A L + T+FVG NG GKTN++EA+ + + R AS A + R Sbjct: 3 VRHLTLTDFRSWARADLELEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+P + ST EG E +++ LE R+ + ++N +R E+ LR Sbjct: 63 AGAPRAVVSTIVVNEGRE----LAVDLEITTGRANKA-RLNRSPVRSPREVLGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FDS 180 P + G ERRR+LD + P D++R++R R LL D Sbjct: 118 APEDLALVRGDPGERRRYLDELATTRRPSIAGVRADYDRVIRQRTALLKSAAGARYRGDR 177 Query: 181 SWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 S ++ + +A G + AR ++++ L+ + E + P + + ++ Sbjct: 178 SVLETLDVWDGHLAAHGALLMAARADLVHHLAPEV-EKAYQLLAPGSRPAAI-----RYR 231 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHGS 288 S A +++ + + ++ +D+M+RR L+GPHR DL + D+ + + S Sbjct: 232 TSIDA-EDDVSAEYYEAALLDAMTRRRDAELERGVCLVGPHRDDLELRLGDQ-MAKGYAS 289 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + + LA L+ T G P+LLLD++ A LD +R AL + Q+ +T Sbjct: 290 HGESWSMALSLRLAAYELL-RTDGSDPVLLLDDVFAELDAARRRALAEVAAS-AEQVLVT 347 Query: 349 GT 350 Sbjct: 348 AA 349 >gi|120596836|ref|YP_961410.1| recombination protein F [Shewanella sp. W3-18-1] gi|166221867|sp|A1RDX9|RECF_SHESW RecName: Full=DNA replication and repair protein recF gi|120556929|gb|ABM22856.1| DNA replication and repair protein RecF [Shewanella sp. W3-18-1] gi|319424420|gb|ADV52494.1| DNA replication and repair protein RecF [Shewanella putrefaciens 200] Length = 360 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 102/362 (28%), Positives = 168/362 (46%), Gaps = 25/362 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LNI FRN +L+ + G NG GKT+ILEAI FL GR FR V + Sbjct: 6 LNIEAFRNIQFAQLIPAPGINVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVINNDN 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + G + I ++ + V+ I+ ++ + L + L I + P S Sbjct: 66 DK-LTLFATLNLARGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSI 186 +F G RR+F+D F DP+ + R+++ RN+LL G Y + Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGAVYTHIQFWDQE 180 Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + AE +I V+ +N L +I E++ + +K+S T D K D F L E Sbjct: 181 FVRYAEQVTEIRNHYVDSLNGLLKGIIGEFLPSVD---VKVSFTRGWDSKTD--FAELLE 235 Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y++ L G T+ GPH++DL + + A S G+ K+++ + +A Sbjct: 236 NQYSRDLATG--------HTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363 +L+ I L+D++ + LD R L + +TD G+Q+F+T D ++ DSL+ Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPN 346 Query: 364 FM 365 M Sbjct: 347 RM 348 >gi|297621405|ref|YP_003709542.1| putative DNA replication and repair protein recF [Waddlia chondrophila WSU 86-1044] gi|297376706|gb|ADI38536.1| putative DNA replication and repair protein recF [Waddlia chondrophila WSU 86-1044] Length = 346 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 161/356 (45%), Gaps = 23/356 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++K L + FR+Y + F Q+ + +G N GKT ILEAI L GR FR + ++ Sbjct: 1 MQVKALLLRNFRSYEKAQFTFGPQNNLIIGPNARGKTTILEAIYLLITGRSFRSRNLDEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F+ VE + +I + ++ R + N R + +L L+ + Sbjct: 61 VREGESGFY-----VEALYENQEIDHSIRFIYEKRQRQIYTNRHPCRSLSDLIGQLQGAL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 ++P ++ G RR FLD + ++P + + + R M+ RN LL + Sbjct: 116 MLPDDVQLVKGAPSRRREFLDLQLAQMNPLYVHHLTRYSRAMQQRNTLLKAQ--NEQAID 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQSFC 241 E +MA G + R +++ L+ VQ +LSL T LD S Sbjct: 174 LFEKEMAASGAYLIAERKRIVDLLAQDCAR-VQD------RLSLGKETVSLDYLAKHSPE 226 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L E+Y K RK + +LIGPH DL + D+ + S G++K + + Sbjct: 227 NLSEQYEKM----RKREMKMGFSLIGPHLDDLTLKLGDREARL-FASEGQKKSLTTALKF 281 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 A ++ + P++L+D++ LD +R L ++ D SQ+F+T T+ F S Sbjct: 282 AEWIQLNTHSDSVPLMLIDDVGVSLDGGRRERLISLL-DTFSQVFVTSTEPLNFHS 336 >gi|301300481|ref|ZP_07206680.1| DNA replication and repair protein RecF [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851928|gb|EFK79613.1| DNA replication and repair protein RecF [Lactobacillus salivarius ACS-116-V-Col5a] Length = 379 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 97/379 (25%), Positives = 164/379 (43%), Gaps = 38/379 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNY + + F Q + +G N GKTN+LE+I L+ R R ++ ++ Sbjct: 6 LELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREMV---- 61 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F A + G + KLE R + ++N + + + L + P Sbjct: 62 -TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNHLEKARLSQYIGQLNVILFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D ID + + ++ ++R RN+ L T+ D + Sbjct: 121 LALVKGAPSVRRRFIDMEFGQIDALYLHTLTEYRAVLRQRNKYLKELQTKKATDKVYLEI 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDGKFDQS 239 + Q++E G +I R+E + L +Y K + H++ L ++ Sbjct: 181 LSEQLSESGSQIIFKRLEFLQELE----KYADKLHNQITQGKEHLQFQYESTLKEYQGKN 236 Query: 240 FCALK----EEYA----KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 LK E+Y K++F G TL+GPHR D+ DK + + +GS G+ Sbjct: 237 VVELKQSLIEQYKTMMDKEIFQG--------TTLLGPHRDDVRFMLNDKNVQV-YGSQGQ 287 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 Q+ + + LA L+ T PILLLD++ + LD ++ L + + + Q F+T Sbjct: 288 QRTAALSVKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQN-KVQTFLTTPG 346 Query: 352 KS-VFDSLNETAKFMRISN 369 S V L K RI N Sbjct: 347 LSDVAQQLINKPKIFRIDN 365 >gi|167755162|ref|ZP_02427289.1| hypothetical protein CLORAM_00667 [Clostridium ramosum DSM 1402] gi|237733415|ref|ZP_04563896.1| recombination protein F [Mollicutes bacterium D7] gi|167705212|gb|EDS19791.1| hypothetical protein CLORAM_00667 [Clostridium ramosum DSM 1402] gi|229383450|gb|EEO33541.1| recombination protein F [Coprobacillus sp. D7] Length = 365 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/356 (27%), Positives = 166/356 (46%), Gaps = 26/356 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + FRNY + FD I +G NG GKTN++EAI LS G+ F+ Sbjct: 1 MKVNSLCLDNFRNYNHFFIEFDRDINILIGSNGQGKTNLIEAIYLLSVGKSFK------- 53 Query: 65 TRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 T I F FA+V+G + LE + +I+D I + E L + Sbjct: 54 THINKQMIMFDCEFAKVKGEVTSNNKLRSLEMILGSDFKRAKIDDQDIYKISEYVGLLNV 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFD 179 VP + G RRRF+D + I P + + + L++ RN ++L + D Sbjct: 114 VVFVPDDLYLIKGSPNNRRRFIDLELSKISPIYVFNLSKYNNLLKERNKYLKILNQKNRD 173 Query: 180 S-SWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGK 235 + ++ QMA L V++ R++ I L+ + I + K + I L + FL + Sbjct: 174 GDEYLEVLDEQMARLQVELIKKRIDFIKNLNQKVTSIYNLIAKNDNEKISLRYSCFLKQE 233 Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 ++ AL ++ ++ D R M S +G H+ DL + + + S G+Q+ Sbjct: 234 LTYENILALYKKNHQR--DIRYMQSH-----LGIHKDDLKI-FMNGNAADLFASQGQQRT 285 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +++ + +A LI + G P+LLLD++ + LDE ++N L I+ Q F+T T Sbjct: 286 IVLSLKIALIELIKDEIGEYPVLLLDDVLSELDEARKNMLLDILNQ-KIQTFITTT 340 >gi|125719147|ref|YP_001036280.1| recombination protein F [Streptococcus sanguinis SK36] gi|166221875|sp|A3CRC5|RECF_STRSV RecName: Full=DNA replication and repair protein recF gi|125499064|gb|ABN45730.1| DNA replication and repair protein recF, putative [Streptococcus sanguinis SK36] Length = 364 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEAI FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDIQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L L Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLHQIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYRFSLIISRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD ++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRISNHQALC 374 K I Q + Sbjct: 351 KIFTIQQGQIMS 362 >gi|300172306|ref|YP_003771471.1| DNA replication and repair protein RecF [Leuconostoc gasicomitatum LMG 18811] gi|299886684|emb|CBL90652.1| DNA replication and repair protein RecF [Leuconostoc gasicomitatum LMG 18811] Length = 375 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 163/354 (46%), Gaps = 19/354 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + +RNY L L F +F+G+N GKTN+LE+I L+ R R +S D+ Sbjct: 1 MELQSLRLVNYRNYTDLTLNFSDGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + RV+ +S+ + ++ ++N + + + L + Sbjct: 61 IRWQEKE-ATISGRVKKSISDTPLSLHFSNKGKKA----RVNHLEQSKLSQYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180 P + G RRRF+D ++P + + R+++ RN RL + D+ Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKERNAYLKRLQMKQTTDT 175 Query: 181 SWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + + Q+ ++G ++ +AR +E + + I + + + L LD + + Sbjct: 176 IFLDVLTEQLVDIGSQVLLARQTFLERLEVAAQPIHAEISNKR-ETLTLRYQTSLDFEKE 234 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVV 295 +K + + L + + M TL+GPHR D+ IV+ D A+ GS G+Q+ Sbjct: 235 TDLATIKLVFEQTLKKQQSREIMQGSTLVGPHRDDIQFIVNDNDVAV---FGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + I LA L+ TG PILLLD++ + LD +++ L + D Q F+T Sbjct: 292 ALAIKLAEIDLMQQETGEYPILLLDDVLSELDANRQTHLLLAIQD-KVQTFITA 344 >gi|299820838|ref|ZP_07052727.1| recombination protein F [Listeria grayi DSM 20601] gi|299817859|gb|EFI85094.1| recombination protein F [Listeria grayi DSM 20601] Length = 369 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/348 (25%), Positives = 156/348 (44%), Gaps = 15/348 (4%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY L + F +F+G+N GKTN+LEAI L+ + R A+ D ++ S Sbjct: 11 FRNYPFLEVDFSPAVNVFLGENAQGKTNLLEAILMLALAKSHRTANDKDFI-----NWDS 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG S+ LE + ++N + + + + +L + P + Sbjct: 66 EEAKIEGRVFRRGQSVPLELMITPKGKKAKVNHLEQKKLSQYVGNLNVVMFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQM 190 G RRRFL+ + + P + + ++R+++ RN+ L D + Q Sbjct: 126 GAPGVRRRFLNMEIAQMQPVYLHELSQYQRVLQQRNQYLKAAQMSKKADPIMLDILNEQF 185 Query: 191 AELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 AE+ + I R E + L + + Y + + +D ++ + K Sbjct: 186 AEIAITITKRRSEFVKKLIRFAAPLHYQISRELEQLTIRYAASID--LQETDESTKTSVM 243 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 +KL +K + TLIGPHR DL Y ++ GS G+Q+ + I LA L+ Sbjct: 244 EKLQKNKKRELERGVTLIGPHRDDLHF-YINEQDVQVFGSQGQQRTTALSIKLAEIDLLK 302 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 G P+LLLD++ + LD+ +++ L + + Q F+T T+ S D Sbjct: 303 EEIGEYPVLLLDDVLSELDDFRQSHLLGAI-EGKVQTFVTTTNISGID 349 >gi|254520693|ref|ZP_05132749.1| recombination protein F [Clostridium sp. 7_2_43FAA] gi|226914442|gb|EEH99643.1| recombination protein F [Clostridium sp. 7_2_43FAA] Length = 361 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 95/372 (25%), Positives = 172/372 (46%), Gaps = 19/372 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY SL + +F+GDN GKTNILEAI + + + R + ++ Sbjct: 3 IKRLQMLNYRNYKSLNITLGKNVNVFMGDNAQGKTNILEAIYYCAFAKSHRTSKDRELIN 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S + + + G + L D +I + D V + + EL + + Sbjct: 63 WNSDSAYVSL--LVGKDRL-DKNIDINILKDGKKAIKINKIKVSK-IGELFGNFNVVMFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +I RR+F+D + ++ ++ ++ + +++ RN +L DS Sbjct: 119 PEDLKIIKDSPGVRRKFIDMELCQLNSKYYYNLVQYNKVLNERNVVLKNRKLDSEILDIY 178 Query: 187 EAQMAELGVKINIARVEMINALS---SLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFC 241 + Q+A G I I R++ IN L+ + I + + KEN +S L+ + SF Sbjct: 179 DIQLANFGYHIIIERLKYINKLNFYGNDIHKDISSGKENVEFKYISTIKDLED-IENSFY 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L L RK D T IGPHR D IV + T + GS G+Q+ ++ I Sbjct: 238 EL-------LRRNRKKDIEKGTTSIGPHRDDFIV-LINDVDTKSFGSQGQQRSAVLTIKF 289 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 + ++I T P+LLLD++ + LD +++ + + +I + I TG + + + L+ + Sbjct: 290 SSLKIIKEMTSEYPVLLLDDVLSELDFNRKRYILSTIGEIQTIITCTGIE-DLTNYLDNS 348 Query: 362 AKFMRISNHQAL 373 ++ ++ + L Sbjct: 349 SRVFKVKEGEIL 360 >gi|239930172|ref|ZP_04687125.1| recombination protein F [Streptomyces ghanaensis ATCC 14672] gi|291438514|ref|ZP_06577904.1| RecF protein [Streptomyces ghanaensis ATCC 14672] gi|291341409|gb|EFE68365.1| RecF protein [Streptomyces ghanaensis ATCC 14672] Length = 373 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 159/361 (44%), Gaps = 27/361 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYPRVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE ++ R +R D L +R Sbjct: 61 VRVGA---DRAIIRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP---HIKLSLT 229 D S + +A G ++ R+++I L L E + P + S Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLITTLQPLADKAYERLAPGGGPLSLEYRPSAP 236 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 G + D L E+ L + RK + TL+GPHR DL++ + + S Sbjct: 237 GEAHTRED-----LFEQLTAALAEARKQEIERGVTLVGPHRDDLLLK-LGRLPAKGYASH 290 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLVLDDVFAELDTRRRERLAELVAP-GEQVLVTA 348 Query: 350 T 350 Sbjct: 349 A 349 >gi|323141434|ref|ZP_08076324.1| putative DNA replication and repair protein RecF [Phascolarctobacterium sp. YIT 12067] gi|322414090|gb|EFY04919.1| putative DNA replication and repair protein RecF [Phascolarctobacterium sp. YIT 12067] Length = 375 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/380 (25%), Positives = 174/380 (45%), Gaps = 35/380 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L FRNY S L + +F G N GKTN+LEAI + + G R ++ ++ Sbjct: 1 MKINSLYAVNFRNYESCSLQLSSMINVFYGQNAQGKTNLLEAIFYSAFGMSHRTSAEEEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ++G+ + + + G ++ IK + +R + + ++ +R + L Sbjct: 61 LKMGADA-MAVGVEYASVSGSHEVKIKKYRQHERWQKEILLDGARVRPKEHYGA-LNTVM 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GYFD 179 P ++ G RRRF D + DP + ++ + R+++ RNRLL E G D Sbjct: 119 FSPEDLQLVKGEPALRRRFFDMQIAQTDPVYYDLLLKYNRVLQQRNRLLKELRDNGGTPD 178 Query: 180 --SSW--------CSSIEAQMAELGVKINIARVEMINALSS----LIMEYVQKENFPHIK 225 W + + ++A LG K+ E+ ++++ L + Y QK N + Sbjct: 179 ILQPWNEEFIRLAAAIVRRRLAALG-KLQAIAGEIYSSITKGSEMLQVRYEQKANNSTL- 236 Query: 226 LSLTGFLDGKFDQSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 + QS A E+ Y ++L + +++D + T IGPHR DL + ++ Sbjct: 237 ---------LYPQSAEAAAEDFYREQLSERQRLDILRGNTGIGPHRDDLQLLLNGLSLR- 286 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 A GS G+Q+ + + L+ + + N G P+LLLD++ + LD +R L + D Q Sbjct: 287 AFGSQGQQRSGALALKLSQLQYVKNELGEFPVLLLDDVMSELDNSRRAQLL-LFIDGRVQ 345 Query: 345 IFMTGTDKSVFDSLNETAKF 364 F+T D+ + L A F Sbjct: 346 TFITVNDRELIPELAGNAYF 365 >gi|116491822|ref|YP_803557.1| recombination protein F [Pediococcus pentosaceus ATCC 25745] gi|122266714|sp|Q03I57|RECF_PEDPA RecName: Full=DNA replication and repair protein recF gi|116101972|gb|ABJ67115.1| DNA replication and repair protein RecF [Pediococcus pentosaceus ATCC 25745] Length = 374 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 21/354 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRNYA L + F + + +G+N GKTN+LE+I FL+ R R S D+ Sbjct: 3 LKTLELHNFRNYADLVVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTNSDRDLI- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S+ + ARV G LE + ++N + + + L + Sbjct: 62 ----SWKTKAARVSGSVQKEHTVTPLEINLSSKGKNAKVNHLEQSRLSQYVGQLNVILFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182 P I G RR+F+D + ++ + +++ RN+ + + F D + Sbjct: 118 PEDLSIVKGSPAVRRKFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYIKQLQFNPKGDQVY 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS--- 239 + Q+A G +I R++ + L E ++ + KLS DQ+ Sbjct: 178 LDVLSDQLAAHGAEIIFQRIQFLKKLEKWSQEVHKEISQGKEKLSFQYVSPISSDQADTT 237 Query: 240 ---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + AL+ + K+ R+ + +TL+GPH D+ DK ++ GS G+Q+ Sbjct: 238 EKIYAALQALFQKQ----REKELQQGKTLVGPHLDDVRFMVNDKNVS-TFGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA L+ TG P+LLLD++ + LD+ ++ L + + Q F+T T Sbjct: 293 LSVKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQN-KVQTFITTT 345 >gi|325275334|ref|ZP_08141285.1| recombination protein F [Pseudomonas sp. TJI-51] gi|324099525|gb|EGB97420.1| recombination protein F [Pseudomonas sp. TJI-51] Length = 367 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 162/353 (45%), Gaps = 16/353 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F V+ EG +++ + E + D ++R I+ R +L + L + Sbjct: 61 IQYEQAAC-TVFGEVQLTEGGTSNLGVSRERQGDFTIR---IDGQNARSAAQLAELLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + E E L+L+ + D+ L Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELGGLTLSYYRGWDKDRE---L 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302 +E A L ++M T GP R+DL + + A I S G+QK+V+ + +A Sbjct: 233 QEVLASSLLRDQQMGH----TQAGPQRADLRLRLAANNAADIL--SRGQQKLVVCALRIA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 287 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 339 >gi|148545262|ref|YP_001265364.1| recombination protein F [Pseudomonas putida F1] gi|166220725|sp|A5VWC0|RECF_PSEP1 RecName: Full=DNA replication and repair protein recF gi|148509320|gb|ABQ76180.1| DNA replication and repair protein RecF [Pseudomonas putida F1] Length = 367 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 163/353 (46%), Gaps = 16/353 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGSNGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F V+ EG +++ + E + + ++R I+ R +L + L + Sbjct: 61 IQYEQAAC-TVFGEVQLTEGGTSNLGVSRERQGEFTIR---IDGQNARSAAQLAELLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + E E L+L+ + D+ L Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE---L 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302 +E A L ++M T GP R+DL + + A I S G+QK+V+ + +A Sbjct: 233 QEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVVCALRIA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 287 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 339 >gi|332685538|ref|YP_004455312.1| DNA recombination and repair protein RecF [Melissococcus plutonius ATCC 35311] gi|332369547|dbj|BAK20503.1| DNA recombination and repair protein RecF [Melissococcus plutonius ATCC 35311] Length = 353 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 84/339 (24%), Positives = 158/339 (46%), Gaps = 25/339 (7%) Query: 25 FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEG 84 F IF+G+N GKTN+LE+I L+ R R + ++ + + A++ G Sbjct: 3 FSKNLNIFLGENAQGKTNLLESIYVLAMTRSHRTNNEKELIQ-----WQELQAKINGSID 57 Query: 85 LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL 144 +I LE + R +IN + + + L + P + G RR+F+ Sbjct: 58 KYSGTIPLEIQLSNKGRKTKINYIEQKRLSAYIGQLNVILFAPEDLSLVKGPPQIRRKFI 117 Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKINIA 200 + + +D + ++ ++ +++ RN+ L + D + + Q+AE G K+ +A Sbjct: 118 NMELGQVDLVYLHNLVQYQGVLKHRNQYLKQLAEKKEKDFLYLDILSEQLAEFGSKVLLA 177 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC--------ALKEEYAKKLF 252 R+ +I L + +K + +L++T + S L++E+ ++L Sbjct: 178 RLSLIKKLEYWANQLHKKISHDKEQLTIT------YSSSITLPTILTQETLQQEFLRQLK 231 Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312 + RK + T IGPHR DLI + D+ + I +GS G+Q+ + I LA + G Sbjct: 232 ENRKRELFKMTTFIGPHRDDLIFNINDQNVQI-YGSQGQQRTTALSIKLAEIDWMHEELG 290 Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 PILLLD++ + LD +++ L + + Q F+T T+ Sbjct: 291 EYPILLLDDVMSELDNERQLHLLETI-EGKVQTFLTTTN 328 >gi|227508131|ref|ZP_03938180.1| recombination protein F [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192360|gb|EEI72427.1| recombination protein F [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 373 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 97/374 (25%), Positives = 167/374 (44%), Gaps = 18/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K +++ FRNY L F +F+G+N GKTN+LEAI L+ R R ++ ++ Sbjct: 1 MKLKDISLHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + ++ G I + L T+ R+ +IN + + L + Sbjct: 61 INWQSQT-AQLKGTIQKQLGKVPIELDLGTKGKRA----KINHLEQAKLSSYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RR+F+D + R+ +++++R RNR L + D Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQS 239 + + Q++ G +I R++++ L + V E K +LT D+ Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGF-AKNVHTE-ISQGKEALTFLYQTAVPDEQ 233 Query: 240 FCALKEEYA---KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +++ Y K+ D ++ + TL+GPHR DL K + + GS G+Q+ Sbjct: 234 LTSIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEVQ-SFGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VF 355 + + LA L+ T PILLLD++ + LD+ ++ L + D Q F+T T S V Sbjct: 293 LSVKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQD-KVQTFLTTTSLSGVQ 351 Query: 356 DSLNETAKFMRISN 369 L K RI+N Sbjct: 352 QELLSNPKIFRIAN 365 >gi|148262088|ref|YP_001228794.1| recombination protein F [Geobacter uraniireducens Rf4] gi|189039625|sp|A5GDX3|RECF_GEOUR RecName: Full=DNA replication and repair protein recF gi|146395588|gb|ABQ24221.1| DNA replication and repair protein RecF [Geobacter uraniireducens Rf4] Length = 364 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 86/352 (24%), Positives = 164/352 (46%), Gaps = 19/352 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + + FRN + L + IF G N GKTN+LE+I L + F+ A +++ Sbjct: 1 MKLNKIYLLSFRNLEKIELTPAHRFNIFYGKNAQGKTNLLESIFLLGTMKSFKMAKNSEM 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R GS S + +G+ + I D+ + ++++ + VDE +L + Sbjct: 61 VRWGSDQSLIKGWVERDGVTREIALFI------DKQGKKIKLDRKSVTKVDEFFGNLNVV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + G+ RR++LDR VF+ D + D+ ++++ RN LL G + S Sbjct: 115 VFTPEEINMVRGVPDLRRKYLDRAVFSSDVTYLHAYHDYCKILKNRNILLKSG--EKSGL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQ----KENFPHIKLSLTGFLDGKFDQS 239 ++AE G K+ R++ ++ + L+ ++ E I+ +++ Sbjct: 173 DVWTEKLAEYGRKVINKRLDYLHEIQELLSKFYNDISGTEEVVEIRYRPHLMDMENYEKD 232 Query: 240 FC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 C AL E K + ++ + TL+GPHR D+ +A+ GS G+Q+ ++ Sbjct: 233 NCGALSEALVKCAAEEQRRGT----TLVGPHRDDIDFVLNGRALK-QFGSQGQQRSYVLA 287 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + ++ + PILLLD++++ LD+D+ L + Q+F+T T Sbjct: 288 LKMSEIDCLHQKFDSPPILLLDDMTSELDQDRNRNLMEFLKKKEMQVFITTT 339 >gi|146291114|ref|YP_001181538.1| recombination protein F [Shewanella putrefaciens CN-32] gi|166221865|sp|A4Y1A6|RECF_SHEPC RecName: Full=DNA replication and repair protein recF gi|145562804|gb|ABP73739.1| DNA replication and repair protein RecF [Shewanella putrefaciens CN-32] Length = 360 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 102/362 (28%), Positives = 168/362 (46%), Gaps = 25/362 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LNI FRN +L+ + G NG GKT+ILEAI FL GR FR V + Sbjct: 6 LNIEAFRNIQFAQLIPAPGINVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVINNDN 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + G + I ++ + V+ I+ ++ + L + L I + P S Sbjct: 66 DK-LTLFATLNLARGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSI 186 +F G RR+F+D F DP+ + R+++ RN+LL G Y + Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHADPQFYGAWTNVRRVIKQRNQLLRNGAVYTHIQFWDQE 180 Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + AE +I V+ +N L +I E++ + +K+S T D K D F L E Sbjct: 181 FVRYAEQVTEIRNHYVDSLNGLLKGIIGEFLPSVD---VKVSFTRGWDSKTD--FAELLE 235 Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y++ L G T+ GPH++DL + + A S G+ K+++ + +A Sbjct: 236 NQYSRDLATG--------HTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363 +L+ I L+D++ + LD R L + +TD G+Q+F+T D ++ DSL+ Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPN 346 Query: 364 FM 365 M Sbjct: 347 RM 348 >gi|224541291|ref|ZP_03681830.1| hypothetical protein CATMIT_00451 [Catenibacterium mitsuokai DSM 15897] gi|224525795|gb|EEF94900.1| hypothetical protein CATMIT_00451 [Catenibacterium mitsuokai DSM 15897] Length = 364 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 165/358 (46%), Gaps = 33/358 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK LN+ +FRNY F I +GDN GKTNILEAI LS R F+ ++ Sbjct: 1 MEIKTLNLIQFRNYEKQTFHFHPLVNIIIGDNAQGKTNILEAIYLLSTTRSFKSRMLDEM 60 Query: 65 TRIGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 F ++ RV G + G +K+ + + IND + + + + Sbjct: 61 I-----MFDQSYTRVSGHIVNGTRPYDLKVVV--SKEGKKAFINDKAVSKTSDYLGYFNV 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFD 179 P ++ G RR +D + I P + + + +LM+ RN ++L +G+ + Sbjct: 114 ILFTPQDLQLIKGSPKMRRTLIDTEISKISPIYMFNLNKYNKLMKERNKYLKMLYDGHKE 173 Query: 180 SS-WCSSIEAQMAELG---VKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFL 232 + + +MAEL ++ + +E++N +S + Y+ + KL L T F Sbjct: 174 PDMYLEVLSEEMAELEEDLIQRRMKFIELLNEISGQMYAYISGKE----KLVLRYHTQFK 229 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 D + K+ Y + +F G +D G H+ DL + + D+ S G+Q Sbjct: 230 DISKEGILDKYKKNYKRDIFQGTTVD--------GIHKDDLKI-FLDENDAGMFASQGQQ 280 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + +++ + +A ++ G P+LLLD++ + LDE+++ L ++ D Q F+T T Sbjct: 281 RSIILSMKIALVEIVKMQIGEYPVLLLDDVLSELDEERKMKLLNLI-DHKVQTFITTT 337 >gi|90581122|ref|ZP_01236921.1| recombination protein F [Vibrio angustum S14] gi|90437643|gb|EAS62835.1| recombination protein F [Vibrio angustum S14] Length = 360 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 166/363 (45%), Gaps = 17/363 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN AS L A VG NG GKT++LEAI +L GR FR + V R Sbjct: 6 LMVHDFRNIASCDLALAAGFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV + + I + + D + ++I + + +L + L + + P Sbjct: 66 AELF-IHGRVVDNQTQLMLPIGINKKRDGTTD-VKIAGESNQKLAQLAQILPLQLITPEG 123 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187 + G RR F+D VF ++P+ +RL + RN LL Y + S+ + Sbjct: 124 FDLLIGGPKYRRAFIDWGVFHVEPKFYHAWARLKRLTKQRNALLKTARSYRELSYW---D 180 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 ++A L +I++ R + I+A+ E Q P + L GF G ++ Y Sbjct: 181 QELALLAEEISVWRKDYISAVKEKAAEIFQV-FLPEFDIQL-GFYRGWEKET------PY 232 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 A+ L + D T+ GPH++DL + + S G+ K+++ + LA + Sbjct: 233 AELLQRNFERDCQLGYTVSGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGLHL 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366 + TG I L+D+ ++ LD +R L + + + +Q+F++ +D V D L+E K Sbjct: 292 TEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISDDQVADMLDENGKLFH 351 Query: 367 ISN 369 + + Sbjct: 352 VEH 354 >gi|313496420|gb|ADR57786.1| RecF [Pseudomonas putida BIRD-1] Length = 367 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 90/354 (25%), Positives = 162/354 (45%), Gaps = 18/354 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRI--GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + + + F EG G +++ + E + + ++R I+ R +L + L + Sbjct: 61 IQYEQAACTVFGEVQLTEG--GTSNLGVSRERQGEFTIR---IDGQNARSAAQLAELLPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 116 QLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPAS 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ + ++ +I+ R I AL + E E L+L+ + D+ Sbjct: 176 QAAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE--- 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFL 301 L+E A L ++M T GP R+DL + + A I S G+QK+V+ + + Sbjct: 232 LQEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVVCALRI 285 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 A L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 286 AQGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELHCQVFITCVDHELL 339 >gi|323350818|ref|ZP_08086477.1| recombination protein F [Streptococcus sanguinis VMC66] gi|322122992|gb|EFX94695.1| recombination protein F [Streptococcus sanguinis VMC66] Length = 364 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 89/366 (24%), Positives = 161/366 (43%), Gaps = 16/366 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FRNY + F +F+G N GKTNILEAI FL+ R R S D+ Sbjct: 3 LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +E G + I L + R ++N + + + + + Sbjct: 63 FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ + Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G ++ R++ + L S + + +N + + +L L Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLHQIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D + + + GS G+ + +++ + LA Sbjct: 235 EETYRFSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362 +LI + T PILLLD++ + LD ++ L ++ DI Q F+T T +L + Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350 Query: 363 KFMRIS 368 K I Sbjct: 351 KIFTIQ 356 >gi|182437496|ref|YP_001825215.1| recombination protein F [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778151|ref|ZP_08237416.1| DNA replication and repair protein recF [Streptomyces cf. griseus XylebKG-1] gi|226737838|sp|B1VPF3|RECF_STRGG RecName: Full=DNA replication and repair protein recF gi|178466012|dbj|BAG20532.1| putative DNA recombination and repair protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658484|gb|EGE43330.1| DNA replication and repair protein recF [Streptomyces cf. griseus XylebKG-1] Length = 376 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 22/358 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R +G I+LE R+ R +R D L +R Sbjct: 61 VRMGA---ERAVIRAAVTQGERSQLIELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFL 232 D S + + +G ++ R+++I L L + V P + L + Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGP-VALEYRSSV 235 Query: 233 DGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 G + L E+ L RK + TL+GPHR DL++ + S G Sbjct: 236 GGDVGPARTRDELYEQLTAALVGVRKQEIERGVTLVGPHRDDLLLGLRGMPAK-GYASHG 294 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 E + + LA L+ + G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 295 ESWSYALALRLASYELL-RSEGNEPVLVLDDVFAELDARRRERLAELVVP-GEQVLVT 350 >gi|311032259|ref|ZP_07710349.1| recombination protein F [Bacillus sp. m3-13] Length = 373 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 168/379 (44%), Gaps = 32/379 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + +RNY SL VF+ + +G+N GKTN++E+I L+ + R ++ D+ R Sbjct: 3 IEELTLRHYRNYESLHAVFEDGVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKDLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + ++EG + + L+ + + +IN + + + ++ I Sbjct: 63 -----WDEEYGKIEGRIHKRNGELPLQLVISKKGKKAKINHIEQTKLSQYIGNMNIVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDSSW 182 P + G RRRF+D + + PR+ + ++++++ RN +L T D + Sbjct: 118 PEDLTLVKGSPQVRRRFIDMELGQVSPRYMHDLSRYQKVLQQRNHYLKQLQTRKQKDETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-----LTGFLDGKFD 237 + Q+ EL + R E + L S H +S LT D Sbjct: 178 LFVLTEQLIELAASVTEKRQEFVQLLQSWAQPI-------HKSISRGLEELTIIYKPSID 230 Query: 238 -----QSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + + E Y +K FD K + R TL GPHR DL+ K + GS G+ Sbjct: 231 YVSETTNLSKMIEAYNEK-FDKIKDREIERGVTLFGPHRDDLLFQVNGKDVQ-TFGSQGQ 288 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 Q+ + + LA LI + G PILLLD++ + LD+ +++ L + Q F+T T Sbjct: 289 QRTTALSLKLAEIDLIHSVVGEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTS 347 Query: 352 KSVFD--SLNETAKFMRIS 368 D +L + A + +S Sbjct: 348 VDGIDHQTLKQAATYEVVS 366 >gi|117923321|ref|YP_863938.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1] gi|259563664|sp|A0L3I9|RECF_MAGSM RecName: Full=DNA replication and repair protein recF gi|117607077|gb|ABK42532.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1] Length = 382 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 97/353 (27%), Positives = 161/353 (45%), Gaps = 15/353 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRN L F + G NG GK+N+LEAI L+ GR FRRA A + Sbjct: 1 MQLDRLTLRDFRNITEAELRFGPGLNLITGPNGHGKSNLLEAIGLLATGRSFRRAPAAAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G P F + G D+ +LE + ++IN L + L Sbjct: 61 RRYGQPWFH-----LRGETTARDLGHRLEFFGQAGRQAVKINGKSASAASALGQALAAVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPR-----HRRRMIDFERLMRGRNRLLTEGYFD 179 + P R+ RR F+D + F + H D+++ ++ RNRLL + Sbjct: 116 VTPDTLRLVQDGPGVRRGFVDWVAFTCGRQQGALSHAVVAGDYQKALKARNRLLKLPRVE 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSLTGFLD---GK 235 + + E+Q+A LG K+ R +++ L + ++ + ++L+ LD Sbjct: 176 AGEWLAWESQLATLGAKMARNRYQVLQRLQPHLDRMLEDLGMAQRLTITLSCQLDRHGTH 235 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + + A Y + L + R + S T IGPHR DL++ A+ GS G+QK Sbjct: 236 WAEDESAAASLYRRLLAENRASERRSGGTAIGPHRDDLVLRLDGHALA-QFGSQGQQKRA 294 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + + LA A+L+ G P+ +LD+ +A LD D + L ++ G QIF+ Sbjct: 295 ALALKLAEAQLLQEQLGEWPLFVLDDPAAELDTDGMSRLMGLLARCGGQIFVA 347 >gi|87121027|ref|ZP_01076919.1| recombination protein F [Marinomonas sp. MED121] gi|86163865|gb|EAQ65138.1| recombination protein F [Marinomonas sp. MED121] Length = 375 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 99/365 (27%), Positives = 173/365 (47%), Gaps = 22/365 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L+IS+ RN + ++ + G NG GKT+ILEAI LS GR FR + Sbjct: 1 MPLQRLDISQLRNLSKVQFKPSPHVNLISGANGSGKTSILEAIHLLSLGRSFRSHKHKTY 60 Query: 65 TRIGSPSFFSTFARVE-------GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 + + S FA +E G+ I +K R V +++ I+ + EL Sbjct: 61 IQKET-SECVIFALIEPVQTTGLGLSSPQPIGLK---RQLDGVLDARLSGQKIQSLVELT 116 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 + L I + P R+ G RR+FLD VF P +++ ++ RN LL G Sbjct: 117 QALPIQLINPDAFRLLEGTPKIRRQFLDWGVFHHSPGFINAWRGWQKALKQRNSLLRRGK 176 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + + + ++ LG ++N R + + +L + + + N +++SL F Sbjct: 177 ISDNLLLAFDQELIRLGSEVNQYRHDYLESLIPVFKQVLSSLN-ATLEVSLQLF------ 229 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 Q + A K A+ L R D S + GP R+DL V + S G+QK+V+ Sbjct: 230 QGWDAQK-TLAQSLDASRSRDIESGYSNTGPQRADLRVK-TPTGDALDALSRGQQKLVVS 287 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + +A +L+ +G + + L+D++ A LD++ R+ L +++ + SQIF+T + D Sbjct: 288 ALKIAQGKLLIE-SGRSLVFLVDDLPAELDKEHRDKLCQLLEALNSQIFITSVGPELMDY 346 Query: 357 SLNET 361 S +ET Sbjct: 347 SWSET 351 >gi|313887660|ref|ZP_07821342.1| DNA replication and repair protein RecF [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846269|gb|EFR33648.1| DNA replication and repair protein RecF [Peptoniphilus harei ACS-146-V-Sch2b] Length = 357 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 108/376 (28%), Positives = 174/376 (46%), Gaps = 26/376 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + FRNY L V + G N GKTN+LE+I FR D+ Sbjct: 1 MKLKHLRLFNFRNYKGLDFVPGENINVLYGLNASGKTNLLESIYMSIRATSFRSLKDFDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN-KHLRIS 123 I S S R + D I++ +++ L IND D++N K R S Sbjct: 61 INIDENSS-SIITRYMTEDYKDDYRIEISKFENKK---LFIND------DKVNTKEYRKS 110 Query: 124 WLV----PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 V P I ERR+FLD ++ ID + M + RL+ RN+LL D Sbjct: 111 RFVVLFNPEDLNIIKYSPKERRKFLDDLLSNIDLNYDFYMYKYRRLLFERNKLLKIN-MD 169 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + ++ G KI I R++ I L+ + ++ + + + ++ + D+ Sbjct: 170 RNLLDVYDREIVRNGTKIIIMRLKTIKKLNEIAKKHYKNLSGDDLNITYLSTVPVFVDEE 229 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVG 298 L E Y + L + D R T IGPHR DL D+ +K + ++GS GEQ+ +++ Sbjct: 230 --ELMENYLRILKESLPKDLEKRYTTIGPHRDDL--DFKINKFSSKSYGSQGEQRSIVLS 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA A LI + P+LLLD++ + +D + L + D+ Q F+T T+ F S Sbjct: 286 LKLAEADLIRDLYKTKPLLLLDDVFSEIDSKRSRYLLHSLKDL--QTFITTTEADEFLKS 343 Query: 358 LNETAKFMRISNHQAL 373 ++ A F R+S + L Sbjct: 344 VD--ANFYRVSQGRIL 357 >gi|26986757|ref|NP_742182.1| recombination protein F [Pseudomonas putida KT2440] gi|38258508|sp|Q88RW7|RECF_PSEPK RecName: Full=DNA replication and repair protein recF gi|24981348|gb|AAN65646.1|AE016191_3 DNA replication and repair protein RecF [Pseudomonas putida KT2440] Length = 367 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 163/353 (46%), Gaps = 16/353 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F V+ EG +++ + E + + ++R I+ R +L + L + Sbjct: 61 IQYEQAAC-TVFGEVQLTEGGTSNLGVSRERQGEFTIR---IDGQNARSAAQLAELLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + E E L+L+ + D+ L Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE---L 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302 +E A L ++M T GP R+DL + + A I S G+QK+V+ + +A Sbjct: 233 QEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVVCALRIA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 287 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 339 >gi|294055474|ref|YP_003549132.1| DNA replication and repair protein RecF [Coraliomargarita akajimensis DSM 45221] gi|293614807|gb|ADE54962.1| DNA replication and repair protein RecF [Coraliomargarita akajimensis DSM 45221] Length = 360 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 155/349 (44%), Gaps = 15/349 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ K L + +FRN + L A +G NG GK+N+LEA+ ++ R FR + + Sbjct: 1 MRFKELRVQDFRNVSFAELDLSADRNFLLGPNGQGKSNLLEALGLVTALRSFRTQQMSAL 60 Query: 65 TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R GS F + + + G ++ I R L + + R+ D + + + Sbjct: 61 PRQGGSGGFAAVYVLQHELRGETELEIHSGA---AGRRVLLDGEAIGRLGDFIGRFPVVP 117 Query: 124 WLVPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + S D I G ERRRFLD + AID + + D+ + + RNRLL G D+ + Sbjct: 118 --LSSGDLMILRGSPAERRRFLDLSLSAIDADYYLALRDYHKGVAERNRLLKRGGRDAEF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + EA++A V+++ RV + L + ++E + I S G Sbjct: 176 -DAFEAEIARHAVRLSAKRVSGMARLEATLVEV-----YAAIAESDEGPAVAYRPGEELG 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E + L RK D + T GPHR D + + S G+Q+ + V + +A Sbjct: 230 TVEHFKAMLERNRKRDQVLGSTQKGPHRDDFSLSLSTGGAK-EYASDGQQRGLCVALRIA 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 A+L AP+LL D++ LD ++ +R D Q+ +GT+ Sbjct: 289 QAKLFQQALNVAPVLLADDVLGELDPHRKAGFWRACPD-DWQLIASGTE 336 >gi|302552698|ref|ZP_07305040.1| recombination protein F [Streptomyces viridochromogenes DSM 40736] gi|302470316|gb|EFL33409.1| recombination protein F [Streptomyces viridochromogenes DSM 40736] Length = 373 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 158/361 (43%), Gaps = 27/361 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYPRVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE R+ R +R D L +R Sbjct: 61 VRMGA---ERAIIRAQVRQGDRQQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229 D S + +A G ++ R+++I + L E + P K S Sbjct: 177 RSMDMSTLDVWDQHLARAGAELLAQRLDLIATIQPLADKAYEQLAPGGGPVALEYKPSAP 236 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 G + D L E+ L + RK + TL+GPHR DL + + + S Sbjct: 237 GEAHTRED-----LYEQLTAALAESRKQEIERGVTLVGPHRDDLQLK-LGQLPAKGYASH 290 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLVLDDVFAELDTRRRERLAELVAP-GEQVLVTA 348 Query: 350 T 350 Sbjct: 349 A 349 >gi|225157625|ref|ZP_03725015.1| DNA replication and repair protein RecF [Opitutaceae bacterium TAV2] gi|224802692|gb|EEG20945.1| DNA replication and repair protein RecF [Opitutaceae bacterium TAV2] Length = 375 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 95/368 (25%), Positives = 158/368 (42%), Gaps = 37/368 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + + FRN A L D + VG NG GKTN+LEA F++ R FR + Sbjct: 1 MRLRRITLQNFRNIAFADLALDGRLQFLVGANGQGKTNLLEAAGFVTALRSFRTTDARIL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G P G + IKL T D + V C + + R+ D L + + Sbjct: 61 IRQGQPEAAIACEFEHEHLGSTRLLIKLRT-DGKEVWC--DGERISRLADHLGRFPTV-- 115 Query: 125 LVPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + S D ++ G RRR+LD + A DP + R + + + + GRN LL Sbjct: 116 VFSSQDQQLVRGAPALRRRWLDLTLSATDPAYLRALQTYHQALAGRNNLLKR-QAPPPQL 174 Query: 184 SSIEAQMAELGVKINIARVEMINALS-------SLIMEYVQKENF--------------P 222 ++ E +A +++ R I L+ + I ++ + + P Sbjct: 175 AAFEHPLAAAAAELSAKRTAGIADLAQHVTTAYARIADHAEPTDIALRADNATPSAGEPP 234 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 + + G+ +++ AL E R D R TL GPHR DL++ ++ Sbjct: 235 PLDAGCSALDVGRSQRAWLALFEH-------ARARDLQMRTTLTGPHRDDLLLRVGGRSA 287 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 +GS G+Q+ + + + LA + TG PILL D++ LD +R + + D Sbjct: 288 R-DYGSEGQQRCLALALRLAQVEFFRHKTGLEPILLADDVLGELDPARRRRFWTSLGDT- 345 Query: 343 SQIFMTGT 350 Q+ TGT Sbjct: 346 RQVIATGT 353 >gi|213966253|ref|ZP_03394437.1| DNA replication and repair protein RecF [Corynebacterium amycolatum SK46] gi|213951105|gb|EEB62503.1| DNA replication and repair protein RecF [Corynebacterium amycolatum SK46] Length = 399 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 102/368 (27%), Positives = 167/368 (45%), Gaps = 36/368 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I++L++ +FR++ L + F T+F G NG GKTNI+EA+ +LS R + A + Sbjct: 1 MHIRYLSLRDFRSWPELEVEFTPGITVFTGQNGYGKTNIVEAVGYLSTLGSHRVSMDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+PS S A +G E A + I + QIN ++ EL ++ Sbjct: 61 VRSGTPSARISATAVNDGRELTAHLLI-----NPHRANQAQINRTRLKSPRELLGIVKSV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---------- 173 + P + G RRR++D ++ P I +++++R +N LL Sbjct: 116 FFSPEDLTLVKGEPASRRRYIDDLLALRRPLSAGIRIQYDKILRQKNALLKSAGSTLRRG 175 Query: 174 ---TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 +EG S + +AQ+A++G + AR+++I LS + E PH + + Sbjct: 176 YSSSEGQAALSTLDTWDAQLAQVGAALMAARMDLIAELSEHVSE-AYATLAPHSRPATIA 234 Query: 231 F------LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT-LIGPHRSDL-IVDYCDKAI 282 + LDG S L E R+ + R + L+GPHR DL ++ D A Sbjct: 235 YAPKVDSLDGGPLPSEPELLEALLLTKMAERRTAEIERGSCLVGPHRDDLDLILGNDPAK 294 Query: 283 TIA-HGSTGEQKVVL-VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 A HG T + L +G + + G PIL+LD++ A LD +R AL I Sbjct: 295 GFASHGETWSFALALRLGAY-----FLLRADGPDPILVLDDVFAELDRHRREALMEIAQQ 349 Query: 341 IGSQIFMT 348 Q+ +T Sbjct: 350 -AEQVLIT 356 >gi|294794200|ref|ZP_06759336.1| DNA replication and repair protein RecF [Veillonella sp. 3_1_44] gi|294454530|gb|EFG22903.1| DNA replication and repair protein RecF [Veillonella sp. 3_1_44] Length = 366 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 163/368 (44%), Gaps = 34/368 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY +++ F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + E + ++IKL + + +R +ND I EL L Sbjct: 61 LMFNAEE-AGIVVKFEKKDTPQKVNIKLFRQGPKDIR---LNDTKIS-QKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P ++ G RRRFLD + + +++ + RL++ RN +L E ++ Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175 Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236 W + A MA VK + ++ IN L L+ LTG L+ + Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222 Query: 237 DQSFCALKE-EYAKKLFDGR-----KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +Q + EY K+ F R D T +GPHR DL + D GS G Sbjct: 223 EQPYMDNGSLEYTKEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQG 281 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + L+ I + G P+LLLD++ + LDE +R L + + Q F+T T Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFIHK-RIQTFITTT 340 Query: 351 DKSVFDSL 358 D F L Sbjct: 341 DIHDFKDL 348 >gi|78484349|ref|YP_390274.1| DNA replication and repair protein RecF [Thiomicrospira crunogena XCL-2] gi|123556168|sp|Q31JS3|RECF_THICR RecName: Full=DNA replication and repair protein recF gi|78362635|gb|ABB40600.1| DNA replication and repair protein RecF [Thiomicrospira crunogena XCL-2] Length = 362 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 162/370 (43%), Gaps = 23/370 (6%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI + FRN L F + VGDN GKT ++EAI L+ GR FR A + Sbjct: 3 KILQFQLQHFRNIEQASLTFGEGLNLIVGDNAAGKTALIEAIWTLASGRSFRTAKPHQLI 62 Query: 66 RIGSPS--FFSTFARVEGME--GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + F T + + GLA S K+ L+I+ + + +++ L Sbjct: 63 QQNQSELVLFGTLTEADRIHKIGLARTSDKV---------TLKIDGELAKTQADMSAKLP 113 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + L P R+ RR+F+D F + ++R ++ RN L + +S Sbjct: 114 VQLLTPESHRLLEEGPKARRQFMDWGCFHHNADFIHLWRHYQRALKQRNHALKK-RLPAS 172 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 +AQ+ + KI++ R + I L+ ++E+ Q P I +S + + + Sbjct: 173 QIQLWDAQLVDAAEKIDVIRADYITRLTPYLVEFCQA-LMPEITVS----PECHYRPGWP 227 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIF 300 E Y + L D D++ T G HR+D+ + +A+ I S G+QK+ + + Sbjct: 228 KTAESYRQLLADNFAKDTLQGHTQYGSHRADIKFRFNGQEALMIL--SRGQQKLFVCALL 285 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN- 359 LA A L + I+L+D++ A LD R L +++ + Q +T T + + L Sbjct: 286 LAQATLYQQHSQNPVIMLIDDLPAELDAKHRETLLKLLNLLDIQHILTSTAQDLIPVLEP 345 Query: 360 ETAKFMRISN 369 E AK RI + Sbjct: 346 EKAKIWRIQH 355 >gi|119961476|ref|YP_945837.1| recombination protein F [Arthrobacter aurescens TC1] gi|166220697|sp|A1R0S5|RECF_ARTAT RecName: Full=DNA replication and repair protein recF gi|119948335|gb|ABM07246.1| putative DNA replication and repair protein RecF [Arthrobacter aurescens TC1] Length = 399 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 103/386 (26%), Positives = 172/386 (44%), Gaps = 39/386 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++++FR+YA + L T+ VG NG+GKTN++EAI +L+ R ++ A + R Sbjct: 3 LEHLSLTDFRSYAQVDLKLGPGVTVLVGSNGIGKTNLMEAIGYLATLSSHRVSTDAPLLR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ R + + G I+LE R+ R +R D L + Sbjct: 63 FGTE---RALIRAKLVRGEQSTVIELEINAGRANRGRINRSNPVRARDILGI-CQTVLFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183 P + G RRRFLD ++ ++ PRH D++R+++ RN LL G F + Sbjct: 119 PEDLALVKGDPSNRRRFLDELLVSLVPRHAATRSDYDRVLKQRNALLKSARTGKFTAGHE 178 Query: 184 SSIEA---QMAELGVKINIARVEMINAL-SSLIMEYVQ-----KENFPHIKLSLTGFLD- 233 ++++ MA G ++ AR+E++ L L Y Q K+ + ++ G LD Sbjct: 179 ATLDVWDQHMARAGAELLHARLELVERLRPHLNSAYAQLTDASKDAGAVYRSTIQGVLDD 238 Query: 234 --GKFDQ--------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 G D S L E Y + RK + +L+GPHR +L + Sbjct: 239 DGGPTDHGTEPSPSVDDLRLLSVDELTERYVQAFAASRKKELERGISLVGPHRDELEL-V 297 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAP--ILLLDEISAHLDEDKRN 332 +A + S GE + + + LA ++ + T G AP IL+LD++ A LD +R Sbjct: 298 LGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGTAPILILILDDVFAELDVHRRR 357 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSL 358 L IV + D + + L Sbjct: 358 KLAAIVAGAEQVLVTAAVDADIPEEL 383 >gi|329942796|ref|ZP_08291575.1| DNA replication and repair RecF family protein [Chlamydophila psittaci Cal10] gi|332287388|ref|YP_004422289.1| recombination protein F [Chlamydophila psittaci 6BC] gi|313847968|emb|CBY16965.1| DNA replication and repair protein [Chlamydophila psittaci RD1] gi|325506793|gb|ADZ18431.1| recombination protein F [Chlamydophila psittaci 6BC] gi|328815056|gb|EGF85045.1| DNA replication and repair RecF family protein [Chlamydophila psittaci Cal10] gi|328914637|gb|AEB55470.1| recF protein [Chlamydophila psittaci 6BC] Length = 368 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 162/365 (44%), Gaps = 16/365 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNY + F G+N GKTN++EA+ LS GR FR + + GS Sbjct: 6 LRLKNFRNYKEAEVSFSPNINYIFGENAQGKTNLIEALYVLSLGRSFRTSHLTEAIFFGS 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 FF TF + +G+ L T D+ + + + I+ + +L + I L Sbjct: 66 SYFFLEMTFEK----DGVPHT---LSTYVDKQGKKIFCDQSPIKTLSQLIGMIPIV-LFS 117 Query: 128 SMDR-IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 + DR + SG +RR FL+ ++ DP+++ + + R + RN LL +S S Sbjct: 118 AKDRCLISGSPSDRRLFLNLLLSQCDPQYKHSLSYYHRALLQRNTLLKTK--QTSTLSVW 175 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + Q+A LG + ++R L+ LI E + + L + S A+K E Sbjct: 176 DEQLATLGSYLCLSRYTCCTQLNQLIQELWNNSLSERLFIKFKSPLIKQCKISQEAVKNE 235 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 K+L D T +GPHR D + D + S G+++ +L + LA + Sbjct: 236 LHKQLSASLHRDLELGNTSVGPHREDFTLMINDLPVA-QFSSEGQKQSLLAVLKLAESLY 294 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 I + P+ +D+I A LD + + L + +G Q +T T +L+ET + Sbjct: 295 IKSIHNVYPLFCMDDIHAGLDNQRISQLLGLAPSLG-QTLITSTTLP-HQTLSETHRIFS 352 Query: 367 ISNHQ 371 ++ Q Sbjct: 353 VNQAQ 357 >gi|15893302|ref|NP_346651.1| recombination protein F [Clostridium acetobutylicum ATCC 824] gi|20978635|sp|Q97N32|RECF_CLOAB RecName: Full=DNA replication and repair protein recF gi|15022821|gb|AAK77991.1|AE007513_4 RecF, ABC family ATPase [Clostridium acetobutylicum ATCC 824] gi|325507411|gb|ADZ19047.1| recombination protein F [Clostridium acetobutylicum EA 2018] Length = 363 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 163/353 (46%), Gaps = 27/353 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + FRNY ++ + F+ + I G+N GKTNILE+I + S G+ R ++ + Sbjct: 3 IKNLYLDNFRNYDNIEIDFNKKVNILTGNNAQGKTNILESIFYCSLGKSHRTNKDKELIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F R+ D I+++ + + IN + ++ + EL + Sbjct: 63 WDKD---EAFIRLNLSRKPLDKKIEIKIFKG-GKKGININSIKLKKISELFGIFNVVMFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P +I RR+FLD + +D R+ +++ + +++ RN +L + + ++ S Sbjct: 119 PEDLKIVKESPGHRRKFLDMEISKLDHRYYYKLVQYNKILDQRNIMLRNKKFLNNDMISV 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL-- 243 + Q+++ G + +R++ +N L+ +K H + GK + F L Sbjct: 179 YDEQLSKFGSSLIESRIKYLNKLN-------EKGKIIH-----SDITKGKEEIEFTYLTH 226 Query: 244 ---KEEYAKKLF----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +E +++LF D K D T +GPHR D + + + GS G+Q+ + Sbjct: 227 VKGRENISEELFSLFKDSYKRDVEKGNTSVGPHRDDFSIK-INGIDARSFGSQGQQRTSV 285 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + I A ++I + P+LLLD++ + LDE ++ + + I + I TG Sbjct: 286 LTIKFASIQIIKEISSETPVLLLDDVLSELDESRQEYILNSLEGIQTLITCTG 338 >gi|294792394|ref|ZP_06757541.1| DNA replication and repair protein RecF [Veillonella sp. 6_1_27] gi|294456293|gb|EFG24656.1| DNA replication and repair protein RecF [Veillonella sp. 6_1_27] Length = 366 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 96/368 (26%), Positives = 162/368 (44%), Gaps = 34/368 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY +++ F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLYGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + E + ++IKL + + +R +ND I EL L Sbjct: 61 LMFNVEE-AGIVVKFEKKDTPQKVNIKLFRQGPKDIR---LNDTKIS-QKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P ++ G RRRFLD + + +++ + RL++ RN +L E ++ Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175 Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236 W + A MA VK + ++ IN L L+ LTG L+ + Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222 Query: 237 DQSFC------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +Q + KE + +++ D T +GPHR DL + D GS G Sbjct: 223 EQPYMDNGSLEYTKEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQG 281 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + L+ I + G P+LLLD++ + LDE +R L + + Q F+T T Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFIHK-RIQTFITTT 340 Query: 351 DKSVFDSL 358 D F L Sbjct: 341 DIHDFKDL 348 >gi|119475238|ref|ZP_01615591.1| recombination protein F [marine gamma proteobacterium HTCC2143] gi|119451441|gb|EAW32674.1| recombination protein F [marine gamma proteobacterium HTCC2143] Length = 366 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 90/349 (25%), Positives = 156/349 (44%), Gaps = 14/349 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L I+ RN S+ L + I GDNG GKT++LEAI LS + FR + Sbjct: 2 VLIRRLEIAGVRNLTSVSLPLLSTINILYGDNGAGKTSVLEAIHLLSSAKSFRGHKLKPL 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 S F ++ + G + +E SV +++ +R L ++L + Sbjct: 62 INSDMDSCV-CFGEID-LPGQGFQPVGVERFKASSVPAVIKVAGQTVRSASALAENLPLQ 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + ++ G RR+F+D VF ++ + + +R ++ RN LL G D S Sbjct: 120 VICSDTFKLLEGSPAVRRQFMDWGVFHVEHQFHSIWKNAQRCLKQRNSLLRHGRLDDSEL 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ G ++++ R + L + E + + LSL + D+S C + Sbjct: 180 AVWTQELVGFGEQLDVFRKSYFDRLVPIFEETLSRL-LDIDGLSLKYYRGWDSDRSLCDV 238 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLA 302 L D T GPHR+DL Y A I S G+QK+V+ + +A Sbjct: 239 -------LAANLNRDKEVTHTQAGPHRADLKFRYRSANAADIL--SRGQQKLVVCALRVA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 L+S G + + L+D++ + LD R AL ++ ++G Q+F+T D Sbjct: 290 QGYLLSQEKGRSCVYLIDDLPSELDRGHRKALCMLLEELGCQVFVTCVD 338 >gi|311696596|gb|ADP99469.1| DNA replication and repair protein recF [marine bacterium HP15] Length = 375 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 166/361 (45%), Gaps = 20/361 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +KF FRN +S + F + + G+NG GKT++LEAI +L GR FR + V Sbjct: 4 VKF-QTENFRNLSSAPVSFSSSFNMLYGENGSGKTSVLEAIGYLGLGRSFRVNRHQAVVS 62 Query: 67 IGSP--SFFSTF-----ARVEGMEGLADISIKLETRDDRSVR--CLQINDVVIRVVDELN 117 G + F +R G E D+ +L D + L+++ +R + L Sbjct: 63 HGEQRLTVFGGLDHGLDSRRHGSE--TDLVHRLGISRDVGQKETMLRVDGEAVRSLSALA 120 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 KHL +S + P + + +G +RR+FLD +VF ++P +R+ RN+ L G Sbjct: 121 KHLPVSVIDPGVFDVVAGGPGKRRQFLDWLVFHVEPSFGSLWQQCQRVTSQRNQTLRNGR 180 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 D + + Q A L +I AR + V++ P + + G +D Sbjct: 181 LDEALMRVWDHQYATLSERITEARAGTFGRFKLAFEKLVREVEVPWTEGLKLEYYPG-WD 239 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S A+ L D R + TL GP+R+D+ + + + + S G+QK +++ Sbjct: 240 VS-----RPLAELLVDHRDQERKVGHTLYGPNRADIRLKFQGRPVAETF-SRGQQKTLVI 293 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + +A ++S+ G LLD+I+A LDE R L + + Q+F+T ++ + D Sbjct: 294 LMKIAQGMVLSD-MGKQVTFLLDDINAELDEGHRAMLAIRLQALRCQVFITSIERPMVDQ 352 Query: 358 L 358 L Sbjct: 353 L 353 >gi|330952330|gb|EGH52590.1| recombination protein F [Pseudomonas syringae Cit 7] Length = 367 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 16/345 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + IF G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINIFYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ ++ RN L G D++ ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ +I+ R I AL + E E L+L+ + ++ A+ A Sbjct: 182 ELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRGWDKEKELSAV---LA 237 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L ++M T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 238 SSLHRDQQMG----HTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|257417429|ref|ZP_05594423.1| RecF protein [Enterococcus faecalis AR01/DG] gi|257159257|gb|EEU89217.1| RecF protein [Enterococcus faecalis ARO1/DG] Length = 375 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 167/355 (47%), Gaps = 18/355 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 --IG---WEQATAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235 + + Q+AE G K+ AR+ + L QK H + +LT Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 D S AL+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ Sbjct: 234 TDLSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + I LA L+ + TG P+LLLD++ + LD +++ L + + Q F+T T Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346 >gi|29374665|ref|NP_813817.1| recombination protein F [Enterococcus faecalis V583] gi|227518105|ref|ZP_03948154.1| recombination protein F [Enterococcus faecalis TX0104] gi|227555688|ref|ZP_03985735.1| recombination protein F [Enterococcus faecalis HH22] gi|229547126|ref|ZP_04435851.1| recombination protein F [Enterococcus faecalis TX1322] gi|229550696|ref|ZP_04439421.1| recombination protein F [Enterococcus faecalis ATCC 29200] gi|255971552|ref|ZP_05422138.1| DNA replication and repair protein recF [Enterococcus faecalis T1] gi|255974525|ref|ZP_05425111.1| DNA replication and repair protein recF [Enterococcus faecalis T2] gi|256618524|ref|ZP_05475370.1| RecF protein [Enterococcus faecalis ATCC 4200] gi|256761857|ref|ZP_05502437.1| DNA replication and repair protein recF [Enterococcus faecalis T3] gi|256854984|ref|ZP_05560345.1| recombination protein F [Enterococcus faecalis T8] gi|256960821|ref|ZP_05564992.1| RecF protein [Enterococcus faecalis Merz96] gi|256963986|ref|ZP_05568157.1| RecF protein [Enterococcus faecalis HIP11704] gi|257078689|ref|ZP_05573050.1| RecF protein [Enterococcus faecalis JH1] gi|257081350|ref|ZP_05575711.1| recombination protein F [Enterococcus faecalis E1Sol] gi|257084007|ref|ZP_05578368.1| recombination protein F [Enterococcus faecalis Fly1] gi|257087837|ref|ZP_05582198.1| RecF protein [Enterococcus faecalis D6] gi|257088489|ref|ZP_05582850.1| recombination protein recF [Enterococcus faecalis CH188] gi|257418839|ref|ZP_05595833.1| recombination protein F recF [Enterococcus faecalis T11] gi|257421346|ref|ZP_05598336.1| recombination protein F [Enterococcus faecalis X98] gi|293382659|ref|ZP_06628587.1| DNA replication and repair protein RecF [Enterococcus faecalis R712] gi|293387929|ref|ZP_06632465.1| DNA replication and repair protein RecF [Enterococcus faecalis S613] gi|294781252|ref|ZP_06746599.1| DNA replication and repair protein RecF [Enterococcus faecalis PC1.1] gi|300861825|ref|ZP_07107905.1| DNA replication and repair protein RecF [Enterococcus faecalis TUSoD Ef11] gi|307268920|ref|ZP_07550284.1| recombination protein F [Enterococcus faecalis TX4248] gi|307274015|ref|ZP_07555225.1| recombination protein F [Enterococcus faecalis TX0855] gi|307284062|ref|ZP_07564232.1| recombination protein F [Enterococcus faecalis TX0860] gi|307296593|ref|ZP_07576413.1| recombination protein F [Enterococcus faecalis TX0411] gi|312901293|ref|ZP_07760576.1| recombination protein F [Enterococcus faecalis TX0470] gi|312903110|ref|ZP_07762291.1| recombination protein F [Enterococcus faecalis TX0635] gi|312908811|ref|ZP_07767750.1| recombination protein F [Enterococcus faecalis DAPTO 512] gi|312951717|ref|ZP_07770611.1| recombination protein F [Enterococcus faecalis TX0102] gi|312979547|ref|ZP_07791229.1| recombination protein F [Enterococcus faecalis DAPTO 516] gi|51316408|sp|Q839Z2|RECF_ENTFA RecName: Full=DNA replication and repair protein recF gi|29342123|gb|AAO79889.1| DNA replication and repair protein RecF [Enterococcus faecalis V583] gi|227074439|gb|EEI12402.1| recombination protein F [Enterococcus faecalis TX0104] gi|227175198|gb|EEI56170.1| recombination protein F [Enterococcus faecalis HH22] gi|229304129|gb|EEN70125.1| recombination protein F [Enterococcus faecalis ATCC 29200] gi|229307708|gb|EEN73695.1| recombination protein F [Enterococcus faecalis TX1322] gi|255962570|gb|EET95046.1| DNA replication and repair protein recF [Enterococcus faecalis T1] gi|255967397|gb|EET98019.1| DNA replication and repair protein recF [Enterococcus faecalis T2] gi|256598051|gb|EEU17227.1| RecF protein [Enterococcus faecalis ATCC 4200] gi|256683108|gb|EEU22803.1| DNA replication and repair protein recF [Enterococcus faecalis T3] gi|256709497|gb|EEU24544.1| recombination protein F [Enterococcus faecalis T8] gi|256951317|gb|EEU67949.1| RecF protein [Enterococcus faecalis Merz96] gi|256954482|gb|EEU71114.1| RecF protein [Enterococcus faecalis HIP11704] gi|256986719|gb|EEU74021.1| RecF protein [Enterococcus faecalis JH1] gi|256989380|gb|EEU76682.1| recombination protein F [Enterococcus faecalis E1Sol] gi|256992037|gb|EEU79339.1| recombination protein F [Enterococcus faecalis Fly1] gi|256995867|gb|EEU83169.1| RecF protein [Enterococcus faecalis D6] gi|256997301|gb|EEU83821.1| recombination protein recF [Enterococcus faecalis CH188] gi|257160667|gb|EEU90627.1| recombination protein F recF [Enterococcus faecalis T11] gi|257163170|gb|EEU93130.1| recombination protein F [Enterococcus faecalis X98] gi|291079965|gb|EFE17329.1| DNA replication and repair protein RecF [Enterococcus faecalis R712] gi|291082666|gb|EFE19629.1| DNA replication and repair protein RecF [Enterococcus faecalis S613] gi|294451715|gb|EFG20170.1| DNA replication and repair protein RecF [Enterococcus faecalis PC1.1] gi|295112343|emb|CBL30980.1| DNA replication and repair protein RecF [Enterococcus sp. 7L76] gi|300848350|gb|EFK76107.1| DNA replication and repair protein RecF [Enterococcus faecalis TUSoD Ef11] gi|306495929|gb|EFM65517.1| recombination protein F [Enterococcus faecalis TX0411] gi|306503433|gb|EFM72682.1| recombination protein F [Enterococcus faecalis TX0860] gi|306509323|gb|EFM78383.1| recombination protein F [Enterococcus faecalis TX0855] gi|306514728|gb|EFM83279.1| recombination protein F [Enterococcus faecalis TX4248] gi|310625249|gb|EFQ08532.1| recombination protein F [Enterococcus faecalis DAPTO 512] gi|310630290|gb|EFQ13573.1| recombination protein F [Enterococcus faecalis TX0102] gi|310633501|gb|EFQ16784.1| recombination protein F [Enterococcus faecalis TX0635] gi|311287729|gb|EFQ66285.1| recombination protein F [Enterococcus faecalis DAPTO 516] gi|311291670|gb|EFQ70226.1| recombination protein F [Enterococcus faecalis TX0470] gi|315026674|gb|EFT38606.1| recombination protein F [Enterococcus faecalis TX2137] gi|315030119|gb|EFT42051.1| recombination protein F [Enterococcus faecalis TX4000] gi|315033553|gb|EFT45485.1| recombination protein F [Enterococcus faecalis TX0017] gi|315143592|gb|EFT87608.1| recombination protein F [Enterococcus faecalis TX2141] gi|315148270|gb|EFT92286.1| recombination protein F [Enterococcus faecalis TX4244] gi|315151294|gb|EFT95310.1| recombination protein F [Enterococcus faecalis TX0012] gi|315153720|gb|EFT97736.1| recombination protein F [Enterococcus faecalis TX0031] gi|315155120|gb|EFT99136.1| recombination protein F [Enterococcus faecalis TX0043] gi|315158750|gb|EFU02767.1| recombination protein F [Enterococcus faecalis TX0312] gi|315163334|gb|EFU07351.1| recombination protein F [Enterococcus faecalis TX0645] gi|315168223|gb|EFU12240.1| recombination protein F [Enterococcus faecalis TX1341] gi|315573988|gb|EFU86179.1| recombination protein F [Enterococcus faecalis TX0309B] gi|315578842|gb|EFU91033.1| recombination protein F [Enterococcus faecalis TX0630] gi|315581939|gb|EFU94130.1| recombination protein F [Enterococcus faecalis TX0309A] gi|323479243|gb|ADX78682.1| DNA replication and repair protein recF [Enterococcus faecalis 62] gi|327533857|gb|AEA92691.1| recombination protein F [Enterococcus faecalis OG1RF] Length = 375 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 167/355 (47%), Gaps = 18/355 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235 + + Q+AE G K+ AR+ + L QK H + +LT Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 D S AL+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ Sbjct: 234 TDLSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + I LA L+ + TG P+LLLD++ + LD +++ L + + Q F+T T Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346 >gi|220915126|ref|YP_002490430.1| DNA replication and repair protein RecF [Anaeromyxobacter dehalogenans 2CP-1] gi|254790458|sp|B8J6Y3|RECF_ANAD2 RecName: Full=DNA replication and repair protein recF gi|219952980|gb|ACL63364.1| DNA replication and repair protein RecF [Anaeromyxobacter dehalogenans 2CP-1] Length = 372 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 87/359 (24%), Positives = 166/359 (46%), Gaps = 14/359 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L++ +FRN A++ L + T+ +G+NG GKTN+LEAI FL+ + R A++ Sbjct: 1 MKLLSLHVQDFRNLAAVELAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + EG G+ +++++ + + R+ D + + Sbjct: 61 VRFGAEQ-GAVAGDFEGPGGVRRVAVQVAAGGRTATLDGKALGSGARLDDYFEGLASVCF 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + +G RRRFLDR F P ++ R +R RN L G + + Sbjct: 120 SPDDLLLVKAGPD-GRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRAGPAEVE--A 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-----HIKLSLTGFLDGKFDQS 239 S + G +I + R +++ L+ + + + P H+ G +D + ++ Sbjct: 177 SFREPLVRAGARILVRRRDLVAELAPRLQAAFAEISGPAAPEAHLAYRAAGGVDVEHPEA 236 Query: 240 FCALKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 A + +A + R + D T GPH DL++ K + +GS G+Q+ +++ Sbjct: 237 EVAARLAHA---LEARLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLA 292 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + +A + G P+LLLD++S+ LD K L + + +Q F+T TD+ + + Sbjct: 293 LKIAEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTSTDRRLIEP 351 >gi|209524390|ref|ZP_03272939.1| DNA replication and repair protein RecF [Arthrospira maxima CS-328] gi|209495181|gb|EDZ95487.1| DNA replication and repair protein RecF [Arthrospira maxima CS-328] Length = 379 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 102/363 (28%), Positives = 181/363 (49%), Gaps = 20/363 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ +FRNY + + FDA TI VG+N GK+N+LEA+ LS + R D+ Sbjct: 3 LKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDLV- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRISWL 125 + + + A +E G D+++ L ++ R+V IN V R +D L+ + + Sbjct: 62 LDNHAIAQITATLERDSGTLDLALTLRSQGRRTV---AINGQSVKRHLDFLSILNVVQFS 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 +D + G ERR +LDR++ ++P + + + R++R RN LL G + Sbjct: 119 SLDLD-LVRGSPAERRHWLDRLLIQLEPVYAYMLDQYNRVLRQRNALLKRGPMAGTTPEE 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD----GKFDQ 238 + +AQ+A G ++ R +I L L + Q + L++T + K Q Sbjct: 178 LAVWDAQLAVAGARVLRRRDRVIERLEPLARMWHQSISGSRETLNITYQPNIEPPSKQQQ 237 Query: 239 SFCALKEEYAKKLF----DGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + E ++ F R + S+ TL+GPHR D+I ++ +GS+G+Q+ Sbjct: 238 RWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFT-INQTPARQYGSSGQQR 296 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 +++ + LA +LI + G P+LLLD++ A LD ++N L + +++ Q +T T Sbjct: 297 TLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLITTTHLG 355 Query: 354 VFD 356 FD Sbjct: 356 AFD 358 >gi|307276496|ref|ZP_07557616.1| recombination protein F [Enterococcus faecalis TX2134] gi|307287178|ref|ZP_07567249.1| recombination protein F [Enterococcus faecalis TX0109] gi|306501776|gb|EFM71067.1| recombination protein F [Enterococcus faecalis TX0109] gi|306506823|gb|EFM75973.1| recombination protein F [Enterococcus faecalis TX2134] gi|315165724|gb|EFU09741.1| recombination protein F [Enterococcus faecalis TX1302] Length = 375 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 167/355 (47%), Gaps = 18/355 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQTVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235 + + Q+AE G K+ AR+ + L QK H + +LT Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 D S AL+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ Sbjct: 234 TDLSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + I LA L+ + TG P+LLLD++ + LD +++ L + + Q F+T T Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346 >gi|90019652|ref|YP_525479.1| RecF protein [Saccharophagus degradans 2-40] gi|123278091|sp|Q21PV3|RECF_SACD2 RecName: Full=DNA replication and repair protein recF gi|89949252|gb|ABD79267.1| DNA replication and repair protein RecF [Saccharophagus degradans 2-40] Length = 367 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 90/368 (24%), Positives = 164/368 (44%), Gaps = 26/368 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN + + + G+NG GKT++LEAIS L+ R FR Y + + Sbjct: 7 LKVQQFRNLGLVDITPSPTLNLVYGENGSGKTSLLEAISVLAHCRSFRTHKYRRLIQ--- 63 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + F +EG + ++ R+ +++ + + +L +L + + Sbjct: 64 -DTTTAFTVFATVEGSDAFKVGVQ-REWSGKSTAKLDGLSAKSSAQLATNLPVQIIDAHT 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + G S RR+F D +VF + + ++ + ++ RN LL S + Q Sbjct: 122 FALLEGGSKARRKFFDWLVFHVKHEFKTAWANYVKCVKQRNSLLRHDKIAYSDLRPWDEQ 181 Query: 190 MAELGVKINIARVE----MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +A L I+ RVE +I A +L+ E +N G+ +G+ Sbjct: 182 IAGLAATIDECRVECITPLIQAFKALMGECKFADNVDLTLAYQPGWKEGELS-------- 233 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + K+L D T++GPH+SDL I A+ + S G+QK V+ + +A A Sbjct: 234 -FPKQLEQAFARDRKLGYTILGPHKSDLKITANGSPAVEVL--SRGQQKAVINALHIAEA 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-----N 359 ++ G P+ LLD++ + LD + L ++++G+Q+F+TG D + S+ N Sbjct: 291 QVYKTQIGRTPVFLLDDMPSELDANHIAILSGWLSNLGAQVFVTGVDANKLASVWPLQKN 350 Query: 360 ETAKFMRI 367 E K + Sbjct: 351 EAIKMFHV 358 >gi|255324006|ref|ZP_05365131.1| DNA replication and repair protein RecF [Corynebacterium tuberculostearicum SK141] gi|255298863|gb|EET78155.1| DNA replication and repair protein RecF [Corynebacterium tuberculostearicum SK141] Length = 403 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 97/380 (25%), Positives = 174/380 (45%), Gaps = 30/380 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FR++ L + T+FVG NG GKTNI+EAI + + R + A + R Sbjct: 3 VRDLDVRDFRSWPELNVQLGPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVSYDAPLVR 62 Query: 67 IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ S S A +G E + IK + QIN +R EL ++ Sbjct: 63 QGADSARVSITAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178 P + G RR +LD ++ + PR D++++++ RN LL GY Sbjct: 118 SPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRGYS 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSL 228 +S +++ +AQ+A LG ++ AR+ +++AL I + E+ P H++ Sbjct: 178 NSDGAAALATLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYSGLAPESRPAHVEYKS 237 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 T +D + A+ +L R+ + +L+GPHR DL+++ D+ S Sbjct: 238 T--IDTSDREVLEAV---LLTELAAARQREIERGISLVGPHRDDLVLNLGDQPAK-GFAS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G P+L+LD++ A LD +R L + + + Sbjct: 292 HGETWSYAIALRLAEFNLLRQEGGSDPVLILDDVFAELDAKRRKQLVHLAAEAEQVLITA 351 Query: 349 GTDKSVFDSLNETAKFMRIS 368 D+ + +L ++ R+S Sbjct: 352 AVDEDLPGNLEPIVRY-RVS 370 >gi|194335185|ref|YP_002016979.1| DNA replication and repair protein RecF [Pelodictyon phaeoclathratiforme BU-1] gi|194307662|gb|ACF42362.1| DNA replication and repair protein RecF [Pelodictyon phaeoclathratiforme BU-1] Length = 369 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 88/370 (23%), Positives = 168/370 (45%), Gaps = 42/370 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K++ ++ FRN+ L +I G N GKT+ILE + + + RGF A ++ Sbjct: 1 MKLQCIHYENFRNHRLLNFEPSYGISILYGPNASGKTSILEGVHYCALTRGFHNALDSEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-----LNKH 119 S F + ++ E + + ++ + +VD+ ++H Sbjct: 61 LYFSSDFFVLESSFLDATERATTVRVLYTKEKEKKI-----------IVDKSEIKPFSRH 109 Query: 120 L-RISWLV--PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 + RI + P+ I +G ERRRFLD + + R+ ++ ++R+++ RN L+ + Sbjct: 110 IGRIPCITFSPAELVIVNGAPAERRRFLDNAICQTNRRYLDDLLAYKRVLQQRNALIGQM 169 Query: 177 YFDSS--------WCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHI- 224 Y + W S ++ L I R++ +++ L + + + + P I Sbjct: 170 YEKTGSQKEMLAIWTDS----LSRLAASIVYTRMQFLSSFLPLFQTLYQLLSPDEHPTIV 225 Query: 225 -KLSLTG-FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 + SL F D DQ L ++ K + + + + +T+ GPHR DL+ + I Sbjct: 226 YRCSLGKVFHDSSIDQ----LYSQFLVKFEETEREEILRGQTMTGPHRDDLLFLLHTREI 281 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S G+ ++ L+ + L+ RL S+ G PI LLD++ + LD NA+FR++ G Sbjct: 282 K-KYASQGQMRIFLIALKLSQHRLFSDILGEKPICLLDDLFSELDASHSNAIFRLLETCG 340 Query: 343 SQIFMTGTDK 352 I + +K Sbjct: 341 QTIITSAENK 350 >gi|156742186|ref|YP_001432315.1| DNA replication and repair protein RecF [Roseiflexus castenholzii DSM 13941] gi|189039636|sp|A7NF69|RECF_ROSCS RecName: Full=DNA replication and repair protein recF gi|156233514|gb|ABU58297.1| DNA replication and repair protein RecF [Roseiflexus castenholzii DSM 13941] Length = 394 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 106/384 (27%), Positives = 184/384 (47%), Gaps = 46/384 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +FRNY L L + T+ G N GKT +LEAI FL+ R R + ++ R Sbjct: 3 VTHLSLRDFRNYERLDLNLEPGVTLLYGPNAAGKTTVLEAIYFLATTRSPRAGADRELVR 62 Query: 67 ------IGSPSFFSTFARVEGMEGLADISIKLETRDDR--------SVRCLQINDVVIRV 112 +G P F V +G + + ++ R + +++ ++I+ +R Sbjct: 63 FEAQGDLGVPPFARLVCDVVRADGYVRLEVVVQRRAEEESAIGATPTIKTVRIDRKAVRA 122 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 +D L +LR+ P+ + +G ERRR+LD + ID R+ R + ++++++ RN L Sbjct: 123 LD-LVGNLRVVLFTPADIALVTGAPAERRRYLDVTLSQIDGRYVRTLAHYQKVVQQRNSL 181 Query: 173 LT---EG-----YFDSS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 L EG Y D W + A L ++ + V +NAL+ + + + Sbjct: 182 LRAWREGRRPLRYADDELAFWDRELAMAGAYL-LRERLHAVVDLNALAGPLYCRMSGGDT 240 Query: 222 PHIKLSLTGFLDG--------KFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSD 272 P + L+ + G +Q+F A + +L D D + R +TLIGPHR D Sbjct: 241 P-LTLAYQSSVAGIDSVTDSRAIEQAFLA----HLTRLRD----DEIGRGQTLIGPHRDD 291 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 L++ I A+GS G+Q+ + + L A+L+ TG AP+LLLD++ + LD ++R+ Sbjct: 292 LLIAVGGVPIG-AYGSRGQQRSATLSLKLGEAKLMRIRTGDAPVLLLDDLLSELDAERRS 350 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFD 356 + I+ Q +T T FD Sbjct: 351 HVQDILERPDQQTIVTATGTDDFD 374 >gi|39995113|ref|NP_951064.1| recombination protein F [Geobacter sulfurreducens PCA] gi|81703762|sp|Q74H90|RECF_GEOSL RecName: Full=DNA replication and repair protein recF gi|39981875|gb|AAR33337.1| recF protein [Geobacter sulfurreducens PCA] gi|307634642|gb|ADI82866.2| DNA replication and repair protein RecF [Geobacter sulfurreducens KN400] Length = 365 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 93/357 (26%), Positives = 158/357 (44%), Gaps = 19/357 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + IS FRN + + FD + + G NG GKT++LEAI L + FR A D+ Sbjct: 1 MHLNAIAISAFRNIDHVEISFDRRFNVLHGANGQGKTSVLEAIYLLGTMKSFRMAKAHDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +P V G A + ++ R R +I+ + + + + Sbjct: 61 IAWNAPHSL-----VRGDIDKAGVRREIALYLGREGRKARIDRKPVTKLADFFGAVNAVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRR+LDR +F D + ++ RL++ RN LL G D Sbjct: 116 FSPEEIGMARGGPELRRRYLDRAIFNGDLGYLLLHHEYHRLLKQRNALLRRGERDGLEVW 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT----GFLDGKFDQSF 240 +I Q+AE G ++ + R ++ + L+ ++ + ++ L G + ++ Sbjct: 176 TI--QLAEAGARLMVKRRAYLSQIEPLVRQFYRDIAGAGQEVGLAYRCHGLASAEGERDC 233 Query: 241 CALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVG 298 A E L + + + R T +GPHR D VD+ I HGS GEQ+ ++ Sbjct: 234 AAALRE----LMAAHEAEELRRGATGVGPHRDD--VDFILNGRVIRHHGSQGEQRSFVLA 287 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + +A + G P+LLLD+IS+ LD ++ L + Q+F+T TD S Sbjct: 288 VKMAEIEYLERLNGAPPVLLLDDISSELDPERNANLMTFLRGKRMQVFITTTDVSTL 344 >gi|91791372|ref|YP_561023.1| DNA replication and repair protein RecF [Shewanella denitrificans OS217] gi|123357292|sp|Q12TC6|RECF_SHEDO RecName: Full=DNA replication and repair protein recF gi|91713374|gb|ABE53300.1| DNA replication and repair protein RecF [Shewanella denitrificans OS217] Length = 360 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 96/359 (26%), Positives = 173/359 (48%), Gaps = 23/359 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I FRN A+ L+ + G NG GKT++LEAI FL GR FR V Sbjct: 1 MSLQRISIESFRNIAAANLLPSEGLNLIYGHNGSGKTSVLEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + FA++ G + + ++ + V+ I+ ++ + L + L I Sbjct: 61 IRHDEDK-LTLFAQLSHHNGESKVGLRRHRNGEIEVK---IDGDRVKRLSTLAETLPIQV 116 Query: 125 LVP-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181 + P S +F G RR+F+D F D + + +R+++ RN+LL G Y + Sbjct: 117 ITPESFSLLFEG-PKARRQFVDWGAFHSDEQFYTAWSNVKRILKQRNQLLRNGSSYGNIL 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + AE +I V+ +N L +I E++ + N I +S T D K D + Sbjct: 176 FWDKELVRYAEQVTQIRNHYVDSLNELLKGIIEEFLPQVN---ISISFTRGWDSKTDLAL 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+ +Y++ L G T+ GPH++DL + + + A S G+ K+++ + Sbjct: 233 L-LESQYSRDLATG--------HTVSGPHKADLRLRVGNLPVQDAL-SRGQLKLLVCALR 282 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL 358 +A +L+ I L+D++ + LD R L + +T+ G+QIF+T + ++ DSL Sbjct: 283 IAQGKLLKQQKDKQSIYLVDDLPSELDAQHRQLLLKQLTETGAQIFVTAIEPAAIVDSL 341 >gi|29830862|ref|NP_825496.1| recombination protein F [Streptomyces avermitilis MA-4680] gi|51316400|sp|Q82FD5|RECF_STRAW RecName: Full=DNA replication and repair protein recF gi|29607975|dbj|BAC72031.1| putative DNA recombination and repair protein [Streptomyces avermitilis MA-4680] Length = 373 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 98/359 (27%), Positives = 161/359 (44%), Gaps = 23/359 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R+G+ + R + L ++LE ++ R +R D L +R Sbjct: 61 VRMGAERAIIRAQVRQDERRQL----VELELNPGKANRARINRSSQVRPRDVLGI-VRTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 116 LFAPEDLALIKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKTAALARRHG 175 Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGF 231 D S + +A G ++ R+++I AL L E + P I L Sbjct: 176 GRSMDLSTLDVWDQHLARAGAELLAQRLDLIAALQPLADKAYEQLAPGGGP-IALEYKPS 234 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 G+ + AL E+ L + RK + TL+GP R +L++ + + S GE Sbjct: 235 APGEA-HTRDALYEQLMAALAEARKQEIERGVTLVGPQRDELLLK-LGQLPAKGYASHGE 292 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 293 SWSYALALRLASYDLL-RAEGNEPVLVLDDVFAELDTRRRERLAELVAP-GEQVLVTAA 349 >gi|330500917|ref|YP_004377786.1| recombination protein F [Pseudomonas mendocina NK-01] gi|328915203|gb|AEB56034.1| recombination protein F [Pseudomonas mendocina NK-01] Length = 367 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 94/348 (27%), Positives = 156/348 (44%), Gaps = 16/348 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 + ++ RN S L + I G NG GKT++LEAI L R FR V Sbjct: 6 ITVTAVRNLHSSSLQPSPRINILYGANGSGKTSVLEAIHLLGLARSFRSTRLQPVIHYEQ 65 Query: 70 PSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 P+ + F +V+ EG +++ I +RD + ++I+ R +L L + + P Sbjct: 66 PAC-TIFGQVQLAEGGYSNLGI---SRDRQGQLQIRIDGQNARSAAQLADLLPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++ R ++ +R RN L G D + ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEHRFLGAWQRLQKALRQRNSWLRHGTLDGASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ +I+ R I AL + E E LSL+ + D+ L E A Sbjct: 182 ELCGASEEIDTYRRAYIQALKP-VFERTLAELLRLEGLSLSYYRGWDKDRE---LSEVLA 237 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L +++ T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 238 TSLLRDQQLG----HTQAGPQRADLRLRLAGHNAAEIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + I L+D++ + LDE R AL R++ D+ Q+F+T D + Sbjct: 292 NEAKRGQCIYLVDDLPSELDEQHRQALCRLLEDLRCQVFITCVDHELL 339 >gi|46447340|ref|YP_008705.1| putative DNA replication and repair protein recF [Candidatus Protochlamydia amoebophila UWE25] gi|51316228|sp|Q6MAG9|RECF_PARUW RecName: Full=DNA replication and repair protein recF gi|46400981|emb|CAF24430.1| putative DNA replication and repair protein recF [Candidatus Protochlamydia amoebophila UWE25] Length = 359 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 158/364 (43%), Gaps = 18/364 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY L F Q + G N GKT +LEAI L GR FR + Y D+ Sbjct: 1 MTLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDL 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + SFF + F + G+E + T D R + N + + L + Sbjct: 61 IQQQFESFFLEAQFYK-HGIE--QTLKFGFHTTD----RKIIYNSTPLATLSNLLGLIPG 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDS 180 + P ++ G RR+FLD + +DP + + + R ++ RN LL + Sbjct: 114 VIITPDDVQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQRNHLLKMKQQISID 173 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW E +M + R + I L +L +Y + + L+L + S Sbjct: 174 SW----EQEMTHSAAYLIQQRYQTITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSI 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +K+ K+L R+ + TL GPH+ DL V + I S G+Q+ + + Sbjct: 230 DEIKKLLVKQLCKNRQREMQIGYTLSGPHKDDLFVAIGGRDIRYF-ASEGQQRSCVNALH 288 Query: 301 LAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 A RL G P+ ++D+I LD ++++ L + +G Q+F+T TD D ++ Sbjct: 289 FAEWNRLHQRGDGDFPLFMIDDIGMSLDSNRKDRLVEQLQSVG-QVFLTTTDPKFLDHID 347 Query: 360 ETAK 363 K Sbjct: 348 ADKK 351 >gi|313680849|ref|YP_004058588.1| DNA replication and repair protein recf [Oceanithermus profundus DSM 14977] gi|313153564|gb|ADR37415.1| DNA replication and repair protein RecF [Oceanithermus profundus DSM 14977] Length = 344 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 157/344 (45%), Gaps = 29/344 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L FRN SL LV VG N GKTN+LEAI FL+ G G R + AD R G+ Sbjct: 6 LRQQNFRNLTSLELVLPPGPLALVGPNASGKTNLLEAI-FLALG-GEVRGALADRVRFGA 63 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + FA VE G+ ++ E R R R +++N+ + EL ++ W+ P Sbjct: 64 -AEARLFAEVETQLGV----VRFEQRFGRGGREIRLNEAPA-SLRELAEYAGAVWIRPED 117 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188 + G ERRR+LD+ + PR+R + +E+ +R RN L T W Sbjct: 118 IALVRGGPEERRRWLDQALMRFSPRYRALLSAYEKTLRQRNAALKTSPRGLGVWNE---- 173 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++A G ++ R ++ L+ L ++ + + L L A E A Sbjct: 174 RLAGYGEQVLHWRRRILERLAPLAAAAYRELDAAPLVLEL----------RETAPPERLA 223 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + L + + TL GPHR D L++ D + S GE + V + + LA RL Sbjct: 224 EVLEANLQEELERGVTLAGPHRDDVRLLLGGLD---AVKFASRGEARSVALALRLAEHRL 280 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 ++ G P+LL+D+ +A LD ++ AL + + Q ++GT Sbjct: 281 LAEHHGEPPLLLVDDFAAELDARRQAALLAYASGL-PQAVLSGT 323 >gi|322381375|ref|ZP_08055378.1| recF-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154951|gb|EFX47222.1| recF-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 383 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 95/377 (25%), Positives = 166/377 (44%), Gaps = 28/377 (7%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 N + ++ L + +RNY + LV D IFVG N GKTN+LE+I L+ + R Sbjct: 5 NALFLQRLTLHHYRNYQHVELVTDRNVNIFVGPNAQGKTNLLESIYVLALTKSHRTHHDK 64 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ + S VE G + + + ++ ++ +IN + + + + L + Sbjct: 65 ELIQWEGESALLQ-GDVEKKYGSYSLDLAISSKGKKA----KINGLEQKKLSQFIGALNV 119 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 P I G RRRFLD + + P + + +++++ RN +L + + S Sbjct: 120 VLFAPEDLEIIKGNPGIRRRFLDMEIGQVYPGYLYDLSQYQKVLAQRNNMLKKAFPAPSA 179 Query: 183 CSSI-----EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKF 236 + Q+A+ GVKI R I L + + H ++ G L ++ Sbjct: 180 EHAAMLDIWNEQLAQFGVKIMKKRQNFIKKLQNWAEQI-------HDGITNGGEELTIRY 232 Query: 237 DQSFC--------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 SF L E++ KL + + +L GPHR DL+ DK + +GS Sbjct: 233 QPSFAVQDFEDETVLMEQFMIKLSQIKDQEIRRGVSLAGPHRDDLLFYINDKEVQ-TYGS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFM 347 G+Q+ + + LA LI + G PILLLD++ + LDE ++ L + + + I Sbjct: 292 QGQQRTTALSLKLAEIELIHSEVGEYPILLLDDVLSELDEYRQTQLIQTFQKKVQTFITT 351 Query: 348 TGTDKSVFDSLNETAKF 364 TG + D L + + F Sbjct: 352 TGLESVHLDQLEDASVF 368 >gi|313893465|ref|ZP_07827035.1| DNA replication and repair protein RecF [Veillonella sp. oral taxon 158 str. F0412] gi|313441908|gb|EFR60330.1| DNA replication and repair protein RecF [Veillonella sp. oral taxon 158 str. F0412] Length = 366 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 163/368 (44%), Gaps = 34/368 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY +++ F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + E + ++IKL + + +R +ND I EL L Sbjct: 61 LMFNAEE-AGIVVKFEKKDTPQKVNIKLFRQGAKDIR---LNDTKIS-QKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P ++ G RRRFLD + + +++ + RL++ RN +L E ++ Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNNIPL 175 Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236 W + A MA VK + ++ IN L L+ LTG L+ + Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222 Query: 237 DQSFCALKE-EYAKKLFDGR-----KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +Q + EY K+ F R D T +GPHR DL + D GS G Sbjct: 223 EQPYMENGSLEYTKEGFYERIKAALPQDRHRLTTSVGPHRDDLRF-FSDAMDLKKFGSQG 281 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + L+ I + G P+LLLD++ + LDE +R L + + Q F+T T Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRANLLQFIHK-RIQTFITTT 340 Query: 351 DKSVFDSL 358 D F L Sbjct: 341 DIHDFKDL 348 >gi|315659992|ref|ZP_07912850.1| recombination protein F [Staphylococcus lugdunensis M23590] gi|315494893|gb|EFU83230.1| recombination protein F [Staphylococcus lugdunensis M23590] Length = 371 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 167/379 (44%), Gaps = 29/379 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY ++ L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FKAEYAKIEGELNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQYGHKTDV 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q A+ + + + R I+ L +L E + P IKLS Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIHDLEALAQPIHAGITNDKEVLSLNYLPSIKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D D+S L E L D + L GPHR DL + + +GS G Sbjct: 233 --DTSQDESI--LLSEVITFLNDNLDREIDRGVCLFGPHRDDLGFN-VNSMDAQTYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346 Query: 351 DKSVFD-SLNETAKFMRIS 368 D + A+ RI+ Sbjct: 347 SVDGIDHDIMNNARLYRIN 365 >gi|152973858|ref|YP_001373375.1| recombination protein F [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189039617|sp|A7GJS2|RECF_BACCN RecName: Full=DNA replication and repair protein recF gi|152022610|gb|ABS20380.1| DNA replication and repair protein RecF [Bacillus cytotoxicus NVH 391-98] Length = 373 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 83/352 (23%), Positives = 158/352 (44%), Gaps = 19/352 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEDLNLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + +++G + S+ LE + + ++N++ + + + + + Sbjct: 63 -----WDEDYGKIKGRLQKRNSSVSLELNISKKGKKAKLNELEQQKLSQYIGEMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSWCS 184 P + G RRRFLD + I P + + +++++ RN LL +G + + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKAMQGKNEETMLD 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKFDQ 238 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 VFTLQLIEHGTKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 233 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 234 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 292 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + LA LI PILLLD++ + LD+ +++ L + Q F+T T Sbjct: 293 LKLAEIELIYAEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT 343 >gi|255527583|ref|ZP_05394447.1| DNA replication and repair protein RecF [Clostridium carboxidivorans P7] gi|296186781|ref|ZP_06855182.1| DNA replication and repair protein RecF [Clostridium carboxidivorans P7] gi|255508716|gb|EET85092.1| DNA replication and repair protein RecF [Clostridium carboxidivorans P7] gi|296048495|gb|EFG87928.1| DNA replication and repair protein RecF [Clostridium carboxidivorans P7] Length = 363 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 84/352 (23%), Positives = 163/352 (46%), Gaps = 21/352 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK+L + FRNY L + + +F+G+N GKTNILE+I + S G+ R ++ Sbjct: 3 IKYLQLINFRNYKELNIELNKNINVFIGNNAQGKTNILESIYYCSIGKSPRTNKDKELIN 62 Query: 67 I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G ++ + + ++ +I I E + + + +N + + + +L + Sbjct: 63 WNGKEAYIKLYVSKDRIDKKIEIKIFKEGK-----KGVNVNSIKVNKISDLMGVFNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I RR+FLD + + ++ ++ + +++ RN +L + +D Sbjct: 118 SPEDLKIVKESPSHRRKFLDIELCKLSKKYYFNLVQYNKVLNERNVVLRK--WDKKNLDM 175 Query: 186 IEA---QMAELGVKINIARVEMINALSS--LIMEYVQKENFPHIKLS-LTGFLDGKFDQS 239 ++ Q+A+ G I R + L+ +I+ +I+ + +TG +S Sbjct: 176 LQVYDEQLAKYGAYIVKTRDHYVKKLTEKGIIIHKNITSGSENIEFNYITGV------KS 229 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +EE L + R D R T GPHR D + + T ++GS G+Q+ ++ I Sbjct: 230 IDNSEEEILNLLENNRLKDFEKRITSFGPHRDDFSIK-INGVDTRSYGSQGQQRTSVLTI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 A +I T G P+LLLD++ + LD +++ + ++DI + I TG + Sbjct: 289 KFASLEIIKETIGEYPVLLLDDVLSELDSNRQKYILNSISDIQTFITCTGIE 340 >gi|81427620|ref|YP_394617.1| recombination protein F [Lactobacillus sakei subsp. sakei 23K] gi|97180789|sp|Q38ZS1|RECF_LACSS RecName: Full=DNA replication and repair protein recF gi|78609259|emb|CAI54306.1| DNA repair and recombination protein RecF (Recombinational DNA repair ATPase) [Lactobacillus sakei subsp. sakei 23K] Length = 375 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 82/349 (23%), Positives = 163/349 (46%), Gaps = 16/349 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L ++ +RNY S+ + F + +G+N GKTN+LEAI L+ R R + ++ + Sbjct: 6 LQLNHYRNYESVDVHFSPDTNVLIGENAQGKTNLLEAIYVLALARSHRTNTDRELIQ--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + FA++ G+ + LE + + ++N + + + L + P Sbjct: 63 --WHEDFAKITGLVQRSAGKTPLELVLSQKGKKAKVNHLEQAKLSQYIGQLNVVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSS 185 I G RR F+D + ++ + ++ +++ RN+ L + D + Sbjct: 121 LNIVKGSPAVRRHFIDMEFGQMSSKYLYNISQYKSILKQRNQYLKQLQRRQAKDLVYLGV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQSFCA 242 + Q+A G ++ +AR + + + + Q+ L+ + + + DQS Sbjct: 181 LSDQLAAYGAEVTVARRQFLQQMEKWAQKLHQEITKDREVLTFKYQSQIPEEQLDQSVEE 240 Query: 243 LKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L +++ + L++ +++ + + TLIGPHR D+ DK + A GS G+Q+ + + L Sbjct: 241 LYQQF-QTLYEKQQIREVEQGTTLIGPHRDDVQFLVNDKDVQ-AFGSQGQQRTTALSVKL 298 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 A L+ TG PILLLD++ + LD+ ++ L + + Q F+T T Sbjct: 299 AEIDLMKAQTGEYPILLLDDVLSELDDLRQTHLLKTFQN-KVQTFLTTT 346 >gi|322417548|ref|YP_004196771.1| DNA replication and repair protein RecF [Geobacter sp. M18] gi|320123935|gb|ADW11495.1| DNA replication and repair protein RecF [Geobacter sp. M18] Length = 364 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 165/353 (46%), Gaps = 21/353 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L ++ FRN ++ LV + +F G+NG GKTN+LE+I L+ + F++A ++ Sbjct: 1 MKLIKLKLASFRNLQNIELVPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQAKNVEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +F S FA ++G+ ++ ++ ++ + +I+ + +D+ +L + Sbjct: 61 I-----AFGSEFALIKGVVERDRVTREIALLLEKQGKKAKIDAKLATRLDDFFGNLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RRR+LDR VF D + D+ ++++ RN LL EG W Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLSYLGAYHDYSKILKSRNALLKLGEGSGIEVW 175 Query: 183 CSSIEAQMAELGVKINIARV-EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q A+L ++ A + E+ L E + I+ L G +D K Sbjct: 176 TEQL-IQSAQLVIERRKAYLAEIGKLLQGFYSEISGNDETVQIEYRLHG-VDEK------ 227 Query: 242 ALKEEYAKKLFDGRKMDSMSRR----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 A E+ A L D K + + T IGPHR DL ++ S G+Q+ ++ Sbjct: 228 AYAEDPAAALSDALKAHAAEEKRRQTTAIGPHRDDLYFGLNGRSAR-HFASQGQQRSFVL 286 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + +A I+ P+LLLD++++ LD ++ L + Q+F+T T Sbjct: 287 ALKMAEIEYITGCFEAPPVLLLDDMTSELDRERNRNLMDFLKKREMQVFITTT 339 >gi|196036149|ref|ZP_03103549.1| DNA replication and repair protein RecF [Bacillus cereus W] gi|195991316|gb|EDX55284.1| DNA replication and repair protein RecF [Bacillus cereus W] Length = 375 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G D S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRDSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGTKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|197120424|ref|YP_002132375.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. K] gi|226737767|sp|B4UJV1|RECF_ANASK RecName: Full=DNA replication and repair protein recF gi|196170273|gb|ACG71246.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. K] Length = 372 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 87/359 (24%), Positives = 165/359 (45%), Gaps = 14/359 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L++ +FRN A++ L + T+ +G+NG GKTN+LEAI FL+ + R A++ Sbjct: 1 MKLLSLHVQDFRNLAAVALAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + EG G+ +++++ + + R+ D + + Sbjct: 61 VRFGA-DQGAVAGDFEGPGGVRRVAVQVAAGGRTATLDGKALGSGARLDDYFEGLASVCF 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + +G RRRFLDR F P ++ R +R RN L G + + Sbjct: 120 SPDDLLLVKAGPD-GRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRAGPAEVE--A 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-----HIKLSLTGFLDGKFDQS 239 S + G ++ + R E++ L+ + + + P H+ G +D ++ Sbjct: 177 SFREPLVRAGARLLVRRRELVAELAPRLQAAFAEISGPEAPEAHLAYRAAGGVDVAHPEA 236 Query: 240 FCALKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 A + +A + R + D T GPH DL++ K + +GS G+Q+ +++ Sbjct: 237 EVAARLAHA---LEARLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLA 292 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + +A + G P+LLLD++S+ LD K L + + +Q F+T TD+ + + Sbjct: 293 LKIAEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTSTDRRLIEP 351 >gi|237801662|ref|ZP_04590123.1| recombination protein F [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024521|gb|EGI04577.1| recombination protein F [Pseudomonas syringae pv. oryzae str. 1_6] Length = 367 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 16/345 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYDQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + + + D +R I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGVARDRQGDFQIR---IDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ ++ RN L G D + ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDVASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ + +I+ R I AL + E E L+L+ + +D+ ++E + Sbjct: 182 ELCQASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L D T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 234 TVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 S I L+D++ + LDE R AL R++ ++ Q+F+T D+ Sbjct: 292 SQVRRGQCIYLVDDLPSELDEHHRQALCRLLEELRCQVFITCVDQ 336 >gi|289677552|ref|ZP_06498442.1| recombination protein F [Pseudomonas syringae pv. syringae FF5] Length = 367 Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 162/345 (46%), Gaps = 16/345 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++IN R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRINGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ ++ RN L G D++ ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ +I+ R I AL + E E L+L+ + +D+ ++E + Sbjct: 182 ELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L D T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 234 TVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|331004663|ref|ZP_08328125.1| hypothetical protein HMPREF0491_02987 [Lachnospiraceae oral taxon 107 str. F0167] gi|330409590|gb|EGG89030.1| hypothetical protein HMPREF0491_02987 [Lachnospiraceae oral taxon 107 str. F0167] Length = 363 Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 90/367 (24%), Positives = 172/367 (46%), Gaps = 19/367 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + ++RNY +L + + IF GDN GKTNILE+I + + R + D+ + Sbjct: 3 IESLELKDYRNYENLDIKLSSGVNIFYGDNAQGKTNILESIYLATTSKSHRGSKDKDIIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125 GS + ++ M S++L+ +S + + IN + IR + EL + + Sbjct: 63 FGSNE-----SHIKLMIEKNSSSVRLDMHLKKSKSKGVAINGIPIRKLSELFGTCNVVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERR F+D + ++ + ++ + +++ RN+LL E F S + Sbjct: 118 SPEDLNIIKRSPKERRNFVDMELCQLNKLYVSTLVTYNKVLDQRNKLLKEIGFKSGVEDT 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + Q+ + G + R I L+ +I H LS ++ ++++ Sbjct: 178 LDIWDMQLVKYGKDLIAYREAFIKELNEVIYGI-------HSLLSGGEKINVVYEKN--V 228 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 K+++ ++L R D + T +GPHR D + GS G+Q+ + + + L+ Sbjct: 229 EKDDFEEELKKSRTSDIRYKTTNVGPHRDDFSFFLNGEMDLKKFGSQGQQRSLALSLKLS 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 LI + G P+LLLD++ + LD +++ L + I + I TG + + SL + Sbjct: 289 EIELIKSRYGEFPVLLLDDVLSELDGKRQSHLLESIKHIQTLITCTGVEDFLNKSL-DIG 347 Query: 363 KFMRISN 369 K +++N Sbjct: 348 KVFKVTN 354 >gi|298484611|ref|ZP_07002716.1| DNA recombination and repair protein RecF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160868|gb|EFI01884.1| DNA recombination and repair protein RecF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 367 Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 167/348 (47%), Gaps = 22/348 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185 R+ G RR+FLD VF ++PR M+ ++RL ++ RN L G D++ ++ Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ +I+ R I AL + E E L+L+ + +D+ ++ Sbjct: 179 WDRELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L D T GP R+DL + A+ I S G+QK+V+ + +A Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAVDIL--SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|261417504|ref|YP_003251186.1| recombination protein F [Geobacillus sp. Y412MC61] gi|297528380|ref|YP_003669655.1| DNA replication and repair protein RecF [Geobacillus sp. C56-T3] gi|319765162|ref|YP_004130663.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC52] gi|261373961|gb|ACX76704.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC61] gi|297251632|gb|ADI25078.1| DNA replication and repair protein RecF [Geobacillus sp. C56-T3] gi|317110028|gb|ADU92520.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC52] Length = 372 Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 89/366 (24%), Positives = 160/366 (43%), Gaps = 21/366 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L ++ +RNY L F + +G+N GKTN++EAI L+ + R ++ D+ R Sbjct: 6 LTLTNYRNYEYETLNFGEGVNVILGENAQGKTNMMEAIYVLAMAKSHRTSNDKDLIR--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG S+ LE ++ + RC N + + + + HL + Sbjct: 63 --WNEEYAKIEGRAEKRSGSLTLELLISKKGKKARC---NHIEQQRLSQYVGHLNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRF+D + + P + + +++L++ RN L D + Sbjct: 118 PEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQARERSDEAV 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIM--EYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ L KI + R + ++ L M Y + + +D Sbjct: 178 LDVLTEQLVLLAAKITLRRRQFLSLLEQWAMPIHYEISRGAEQLCIRYEPSVDVSEKAEL 237 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + E Y++ R+ + + TL+GPHR D I + + GS G+Q+ + + Sbjct: 238 SRIVEAYSETFAAMREREVLRGTTLVGPHRDD-IAFFVNGKNVQTFGSQGQQRTTALAVK 296 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSL 358 LA LI + G PILLLD++ + LD+ ++ L + Q F+T T D D + Sbjct: 297 LAELELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRK-KVQTFVTTTSIDGIKHDII 355 Query: 359 NETAKF 364 E A + Sbjct: 356 QEAAIY 361 >gi|218134380|ref|ZP_03463184.1| hypothetical protein BACPEC_02274 [Bacteroides pectinophilus ATCC 43243] gi|217989765|gb|EEC55776.1| hypothetical protein BACPEC_02274 [Bacteroides pectinophilus ATCC 43243] Length = 358 Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 87/368 (23%), Positives = 168/368 (45%), Gaps = 18/368 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +N+ ++RNY L + + I GDN GKTNILE++ + + R + ++ R Sbjct: 3 VKSINLKDYRNYELLNIELSDKTNIIYGDNAQGKTNILESMYVGATTKSHRGSKDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125 G A ++ + DI +++ ++ + + +N + ++ EL + + + Sbjct: 63 FGCDE-----AHIKMIVCRNDIDYRIDMHIKKNKAKGIAVNGIPLKRSVELFGIVNMVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + +D + ++ + +++ RN+LL + F + Sbjct: 118 SPEDLNIIKDGPAERRRFMDMELSQLDKVYVFNLMQYNKVLMQRNKLLKDIAFRPDSMDT 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ Q+ G ++ R E + L+ ++ H KLS G + K + A Sbjct: 178 LDVWDMQLVRYGEEVIKGRTEFVIKLNDIVSRI-------HSKLS-GGREELKIEYLPSA 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E R D T GPH+ D+I Y + +GS G+Q+ + + LA Sbjct: 230 DSGELGSCTASSRDKDIRFGATAYGPHKDDIIF-YINGNDVRKYGSQGQQRTAALSLKLA 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 L+ T PILLLD++ + LDE+++N L + DI + + TG ++ + + ++ Sbjct: 289 EIELVRQTINDTPILLLDDVLSELDENRQNFLMESMGDIQTVVTCTGLEEFINNRISLDK 348 Query: 363 KFMRISNH 370 F ++ H Sbjct: 349 VFKVVNGH 356 >gi|329770366|ref|ZP_08261748.1| hypothetical protein HMPREF0433_01512 [Gemella sanguinis M325] gi|328836489|gb|EGF86149.1| hypothetical protein HMPREF0433_01512 [Gemella sanguinis M325] Length = 378 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 96/380 (25%), Positives = 175/380 (46%), Gaps = 24/380 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L + FRNY SL + + VGDN GKTNI+E+I L+ G+ +R S ++ Sbjct: 1 MKIKTLKLLYFRNYLSLNIEVHPSLNVLVGDNANGKTNIIESIFCLALGKSYRTKSDSEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-VIRVVDELNKHLRIS 123 G + + +E + + DI + + + +S + + + V ELN + Sbjct: 61 IMFGEEAAAMSCV-LEKNDKMLDIMLGINNK-GKSAKIAGLKKTKLTDFVGELN----VV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GY 177 P +I G RR F++R + + + + ++ L++ RN L + Sbjct: 115 LFSPEDLQIIKGSPSLRREFINREFYQFSRIYHKYYLLYQHLLKQRNSYLKDMRKNPKDE 174 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV-----QKENFP-HIKLSLTGF 231 F ++ +I +Q+ ++ + I R I LS L + + KE+ K S+ Sbjct: 175 FSLAYLETITSQLVKIAMYITKERSLFIKNLSKLAQKNMLNISNHKEDLELKYKSSILDM 234 Query: 232 L--DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 L + D+ F +E KK+ D D M T IGPH+ DL + +K + S Sbjct: 235 LNINSVEDKDFN--EENIIKKIMDKSYDDIMRGSTRIGPHQDDLEF-FINKLDAKMYASQ 291 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ +++ + L+ + + TG PILLLD++ + LD +++ L + + T Sbjct: 292 GQQRSIVLSLKLSEIDYLKSKTGSYPILLLDDVLSELDRNRQLKLLDAINENVQTFITTP 351 Query: 350 TDKSVFDSLNETAKFMRISN 369 + + + L + AK +I+N Sbjct: 352 SISDIKEDLLKKAKVFKINN 371 >gi|332706260|ref|ZP_08426328.1| DNA replication and repair protein RecF [Lyngbya majuscula 3L] gi|332354965|gb|EGJ34437.1| DNA replication and repair protein RecF [Lyngbya majuscula 3L] Length = 383 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 101/381 (26%), Positives = 177/381 (46%), Gaps = 51/381 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ +FRNY + FDA TI +G+N GK+N+LEA+ LS + R ++ Sbjct: 3 LKSLHLRQFRNYRDCLVNFDAPKTILLGNNAQGKSNLLEAVELLSTLKSHRSVRDRELVL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 +P A +E G ++ + L T+ R+V Q + L + L ++ Sbjct: 63 ETTP-IAEIRATLERTYGSVELGLTLRTQGRRTVALNQ---------ESLRRQLDFLGIL 112 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----- 173 ++ FS L +E RR +LD ++ ++P + + + +++R RN LL Sbjct: 113 NAVQ--FSSLDLELVRGAPERRRAWLDSILTQLEPIYAYILQQYNQVLRQRNALLKKIRK 170 Query: 174 --TEGYFDSSWCSSI-------EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 EG D+S +AQ+A G ++ R M+ L+ L + H Sbjct: 171 LQQEGEVDASVSKQYNAELGLWDAQLATAGSRVTRRRERMLKRLAPLAQAW-------HA 223 Query: 225 KLS-LTGFLDGKFDQSFCA-------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 +S T LD + + +K+ + +K+ + RTL+GPHR D + Sbjct: 224 SISGKTEVLDITYAPNVSLSKDDPDLVKQAFLEKIQQYSLPEFHQGRTLVGPHR-DEVQF 282 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 ++ ++GS G+Q+ +++ + LA +LI G AP+LLLD++ A LD +++N L Sbjct: 283 TINQTPAKSYGSQGQQRTLVLALKLAELKLIEEVVGEAPLLLLDDVLAELDLNRQNLLLD 342 Query: 337 IVTDIGSQIFMTGTDKSVFDS 357 + D Q +T T FDS Sbjct: 343 AIQD-RFQTLITTTHLGAFDS 362 >gi|307331910|ref|ZP_07611006.1| DNA replication and repair protein RecF [Streptomyces violaceusniger Tu 4113] gi|306882428|gb|EFN13518.1| DNA replication and repair protein RecF [Streptomyces violaceusniger Tu 4113] Length = 380 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 98/364 (26%), Positives = 161/364 (44%), Gaps = 30/364 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYTRAEVALDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A V+G I+LE ++ R +R D L LR Sbjct: 61 VRMGAERAVVRAAVVQGDR---QQLIELELNPGKANRARINRSSQVRPRDVLGI-LRSVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARVPRMAGVRSDYDRVLKQRNTLLKTAALARRHGS 176 Query: 175 -EGYFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP----HI 224 G D++ + + +A G ++ R+++I L L E + P + Sbjct: 177 RSGGGDAALSTLDVWDQHLARAGAELLAQRLDLIAVLQPLADKAYEQLAPGGGPVLLEYR 236 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 + G + + C L L + RK + TL+GPHR DL++ + Sbjct: 237 GSAGEGLTEAGSREELCEL---LMAALTEARKQEIERGVTLVGPHRDDLVLK-LGRLPAK 292 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 + S GE + + LA L+ G P+L+LD++ A LDE +R L +V G Q Sbjct: 293 GYASHGESWSYALALRLASYDLLRTEAG-EPVLVLDDVFAELDERRRERLAELVAP-GEQ 350 Query: 345 IFMT 348 + +T Sbjct: 351 VLVT 354 >gi|330444455|ref|YP_004377441.1| DNA replication and repair protein recF [Chlamydophila pecorum E58] gi|328807565|gb|AEB41738.1| DNA replication and repair protein recF [Chlamydophila pecorum E58] Length = 358 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 161/366 (43%), Gaps = 13/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L + FR+Y + F + G N GKTN+LEA+ LS GR FR ++ Sbjct: 1 MKIVSLTLKNFRSYKDTEVSFAPRVNYISGSNAQGKTNLLEALYILSLGRSFRTQHLSEA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ FF A E +SI + D+ + L ++ ++ + E+ + + Sbjct: 61 IAFGASYFFLKIA-FEKFSCSHTLSIYV----DKYGKKLLFDNAPVKTLSEMIGKVPMV- 114 Query: 125 LVPSMDRIF-SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 L S DR+ SG +RR FL+ ++ DP + + +++ + RN LL +++ Sbjct: 115 LFSSKDRLLISGAPADRRLFLNLLLSQCDPYYTHTLSYYQQALLQRNALLKTK--NTATI 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S Q+A+LG I R + L+ L+ H+ L L L Sbjct: 173 SVWNEQLAKLGGYITFQRYTCCDKLNVLMQSLWSNPLKEHLLLKFKSSLIKTPAPKEEEL 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E K+L D + T +GPHR D + ++ S G++ L + LA Sbjct: 233 SQELLKQLLHSLPRDLELKSTSVGPHREDFTL-MMNQEPASTFASEGQKHSFLTILRLAE 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 + + + +P++ +D++ A LD + + L ++ + G Q +T T +L E +K Sbjct: 292 SLYLQHHHNLSPLVCIDDLHASLDSQRASQLLQLAPNFG-QTLITSTQP--LYTLPENSK 348 Query: 364 FMRISN 369 + I N Sbjct: 349 SLHIKN 354 >gi|309774993|ref|ZP_07670009.1| DNA replication and repair protein RecF [Erysipelotrichaceae bacterium 3_1_53] gi|308917247|gb|EFP62971.1| DNA replication and repair protein RecF [Erysipelotrichaceae bacterium 3_1_53] Length = 366 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 86/355 (24%), Positives = 165/355 (46%), Gaps = 7/355 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + +FRNYA + + F I G N GKTN+LE+I +LS R R + D+ Sbjct: 1 MRLETLRLHDFRNYADINVSFSDGIHILTGKNAQGKTNLLESILYLSTTRSHRTSEDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G +FF A + + DI + T +++ + V RV D + + + + Sbjct: 61 IKEGEEAFFIK-ASIAKEQKTEDIRV---TVNEKGKNLFIYQNPVNRVSDFIGEFNSVMF 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 M+ +F RRRF+D + I ++ + RL++ RN L + D S+ Sbjct: 117 CPDDMN-LFQASPRVRRRFVDMELSKISKKYVSTLYVATRLLKERNAYLKQERVDRSYLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + AQ+ + V I R + L + ++ + +++ F + LK Sbjct: 176 VLTAQLVDASVIIIKQRHFFLEELLEKCRAFYRQLSNDDTDITVRYLSCVPFSEKEQELK 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + KK D + ++T G H+ D I + +K + +++ S G+++ VL+ + + Sbjct: 236 DALLKKYQKHLDRDLLLKQTTAGIHKEDFIFEMNNKEL-VSYASQGQKRSVLLALKIGMI 294 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 +I T P+LLLD++ + LD ++ L + + QIF++ TD + +N Sbjct: 295 HMIHEITQEYPVLLLDDVFSELDSYRKAELLKSLPQ-EVQIFISTTDTVDMEDIN 348 >gi|310657320|ref|YP_003935041.1| DNA replication and repair protein recf [Clostridium sticklandii DSM 519] gi|308824098|emb|CBH20136.1| DNA replication and repair protein recF [Clostridium sticklandii] Length = 361 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 96/369 (26%), Positives = 171/369 (46%), Gaps = 26/369 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + +S FRNY+ F + +G NG GKTN++EAI LS GR FR ++ Sbjct: 3 INNITLSNFRNYSKAEANFSENLNLIIGKNGQGKTNLIEAIYMLSLGRSFRTNKDKEMMM 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + + + + + M I IKL +D + + ++IN + I + +L + I Sbjct: 63 FDALNTYIS-SEITAMGRNYKIEIKL-GKDIK--KAVKINSIPIEKLTDLLGIINIVIFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P ++ ERR F+DR + + P + + +++++ RN LL D + Sbjct: 119 PEDLKLVREGPKERRGFMDREISQLRPNYYSLIHKYQKILVQRNNLLKNTKIDENLLDVY 178 Query: 187 EAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q+A + KI R E I+ ++ + I +K N ++ ++T + +FD S Sbjct: 179 DEQLAIVSQKIMAYRKEFIDNITPIASANHYRISSGKEKLNIKYLP-NITASSEIEFDSS 237 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + K R D R T GPH+ D+ + D + + GS G+++ + + Sbjct: 238 YI------FNKFKTSRAEDIRRRTTTSGPHKDDIGIYLGDMDLR-SFGSQGQKRSAAISL 290 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-----KSV 354 L+ +LI P++LLD+I + LD ++ L +++I Q F+T T+ K V Sbjct: 291 KLSEIQLIFEEKNEYPVVLLDDIFSELDISRQKMLIDSLSEI--QTFVTTTEAIDFNKEV 348 Query: 355 FDSLNETAK 363 L E AK Sbjct: 349 KTYLIENAK 357 >gi|289551837|ref|YP_003472741.1| DNA recombination and repair protein RecF [Staphylococcus lugdunensis HKU09-01] gi|289181368|gb|ADC88613.1| DNA recombination and repair protein RecF [Staphylococcus lugdunensis HKU09-01] Length = 371 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/360 (24%), Positives = 160/360 (44%), Gaps = 28/360 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY ++ L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FKAEYAKIEGELNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQYGHKTDV 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q A+ + + + R I+ L +L E + P IKLS Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIHDLEALAQPIHAGITNDKEALSLNYLPSIKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D D+S L E L D + L GPHR DL + + +GS G Sbjct: 233 --DTSQDESI--LLSEVITFLNDNLDREIDRGVCLFGPHRDDLGFN-VNSMDAQTYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346 >gi|291297542|ref|YP_003508820.1| DNA replication and repair protein RecF [Stackebrandtia nassauensis DSM 44728] gi|290566762|gb|ADD39727.1| DNA replication and repair protein RecF [Stackebrandtia nassauensis DSM 44728] Length = 378 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 23/359 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR+Y + + ++FVG NG GKTN++E++ +L+ G R S A + Sbjct: 1 MHVRRLELTDFRSYGHVDVELPEGPSVFVGPNGHGKTNLIESLGYLATGSSHRVTSDAPL 60 Query: 65 TRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S + A V EG E LA+++I + +R+ ++N + +L L+ Sbjct: 61 VRAGCESATARAAIVHEGRELLAELTIT-PGKANRA----RLNRSPLPRSRDLIGALKAV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178 P + G +RRR LD ++ A PR D++R+++ RN LL Y Sbjct: 116 VFAPEDLNLIRGEPEQRRRLLDELLIARHPRFAGVRADYDRVVKQRNALLRTAYLARKTG 175 Query: 179 -----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLT 229 D + +A +A+ G + R+ +I + +++ + P + Sbjct: 176 GRGNTDLHTLDTWDAHLAQHGADLLAGRLALIEDYTPYVVKAYEAVSAGRGRPRLSYHSA 235 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + L + L R + TL+GPHR DL + D + S Sbjct: 236 LGENEPLSPDRDLLTARLSAALATARSREVERGTTLVGPHRDDLKLVLGDLPAK-GYASH 294 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + L A L+ + G AP+L+LD++ A LD +R L +V Q+ +T Sbjct: 295 GESWSYALALRLGAAELLRD-NGTAPVLILDDVYAELDSQRRERLAELVAR-APQVLVT 351 >gi|167461554|ref|ZP_02326643.1| recombination protein F [Paenibacillus larvae subsp. larvae BRL-230010] Length = 377 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 162/370 (43%), Gaps = 28/370 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +RNY + LV D IFVG N GKTN+LE+I L+ + R ++ + Sbjct: 6 LTLHHYRNYQHVELVTDRNVNIFVGPNAQGKTNLLESIYVLALTKSHRTHHDKELIQWEG 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S VE G + + + ++ ++ +IN + + + + L + P Sbjct: 66 ESALLQ-GDVEKKYGSYSLDLAISSKGKKA----KINGLEQKKLSQFIGALNVVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI--- 186 I G RRRFLD + + P + + +++++ RN +L + + S + Sbjct: 121 LEIIKGNPGIRRRFLDMEIGQVYPGYLYDLSQYQKVLAQRNNMLKKAFPAPSAEHAAMLD 180 Query: 187 --EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFC-- 241 Q+A+ GVKI R I L + + H ++ G L ++ SF Sbjct: 181 IWNEQLAQFGVKIMKKRQNFIKKLQNWAEQI-------HDGITNGGEELTIRYQPSFAVQ 233 Query: 242 ------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 L E++ KL + + +L GPHR DL+ DK + +GS G+Q+ Sbjct: 234 DFEDETVLMEQFMIKLSQIKDQEIRRGVSLAGPHRDDLLFYINDKEVQ-TYGSQGQQRTT 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV 354 + + LA LI + G PILLLD++ + LDE ++ L + + + I TG + Sbjct: 293 ALSLKLAEIELIHSEVGEYPILLLDDVLSELDEYRQTQLIQTFQKKVQTFITTTGLESVH 352 Query: 355 FDSLNETAKF 364 D L + + F Sbjct: 353 LDQLEDASVF 362 >gi|238018220|ref|ZP_04598646.1| hypothetical protein VEIDISOL_00044 [Veillonella dispar ATCC 17748] gi|237864691|gb|EEP65981.1| hypothetical protein VEIDISOL_00044 [Veillonella dispar ATCC 17748] Length = 366 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 97/368 (26%), Positives = 162/368 (44%), Gaps = 34/368 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY + + F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVTIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + E + ++IKL + + +R +ND I EL L Sbjct: 61 LMFNAEE-AGIVVKFEKKDTPQKVNIKLFRQGPKDIR---LNDTKIS-QKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD--- 179 P ++ G RRRFLD + + +++ + RL++ RN +L E G + Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAILKEYRGKQNIPL 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236 W + A MA VK + ++ IN L L+ LTG L+ + Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222 Query: 237 DQSFC------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +Q + KE + +++ D T +GPHR DL + D GS G Sbjct: 223 EQPYMDNGSLEYTKEGFYERIKAALPQDRHRMTTSVGPHRDDLRF-FSDAMDLKKFGSQG 281 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + L+ I + G P+LLLD++ + LDE +R L + + Q F+T T Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRANLLQFIHK-RIQTFITTT 340 Query: 351 DKSVFDSL 358 D F L Sbjct: 341 DIHDFKDL 348 >gi|237806779|ref|YP_002891219.1| DNA replication and repair protein RecF [Tolumonas auensis DSM 9187] gi|237499040|gb|ACQ91633.1| DNA replication and repair protein RecF [Tolumonas auensis DSM 9187] Length = 357 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 91/349 (26%), Positives = 156/349 (44%), Gaps = 14/349 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I FRN + + +G NG GK+++LEAI +LS GR FR V G Sbjct: 5 LQIQHFRNLGQTEIYPSGGMNLLLGLNGSGKSSVLEAIHYLSLGRSFRTHLTNRVIMQGE 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + F+ FA++E E ISI L+ +D + L+I + +L L + + P Sbjct: 65 KA-FTLFAQLELDE--QSISIGLQ-KDRQGDTQLKIGGKSADKLAQLASLLPLQLIHPEG 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G +RR F+D VF ++ RL++ RN LL + + + + Q Sbjct: 121 YNLLTGGPQQRRAFIDWGVFHVEQAFFPLWGKVRRLLKQRNALLRQSSHYAP-LAYWDQQ 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +AE +++ R + AL L+ + Q E P T + + +Q L +E Sbjct: 180 LAEFSEALSVFRQQYCQALLPLVQQICQ-ELLPEYTFQATFYAGWQQEQGLHLLLQE--- 235 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 G + D T IGPHR+DL + + S G+ K+++ + LA + Sbjct: 236 ----GFERDRQLGHTAIGPHRADLRLR-AEGVPVQDLLSRGQLKLLVCALRLAQGLYLRQ 290 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + + L+D+ ++ LD +KR L + + SQ+F+T D+ + Sbjct: 291 NSEKTCLFLIDDFASELDAEKRYVLAKRLQQCESQVFITAIDQQPLQEM 339 >gi|332991511|gb|AEF01566.1| Recombinational DNA repair ATPase [Alteromonas sp. SN2] Length = 362 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 158/355 (44%), Gaps = 17/355 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + ++ FRN +S L TI G NG GK++++E+I +L GR FR + V Sbjct: 1 MKLDKVQLTNFRNISSANLSPSPALTIIRGVNGSGKSSLVESIFYLGFGRSFRTNKHTSV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G FS FA + E +++ + R + + C IN + +L + + Sbjct: 61 IKTGEEE-FSVFASCKNEES-ETLNLGFQRRRNDTFTC-SINGEHSNKLSDLVSLVPVQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P + G ERRRF D +F ++ + + F + ++ RN LL + + Sbjct: 118 FTPQSTDLILGSPSERRRFCDWGLFHVEHDFQMLSVQFSKFLKHRNALLKQQSDLSAPQN 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E E ++I R + I+ L+ + +Y K+SL + + D S Sbjct: 178 QYWEQCFLERAEALSIKREDYISKLTPIFEKYATT-FLAEYKVSLNYYKGWEKDASL--- 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+ L R+ D T GPH++D L ++ + + S G+ ++ + + + Sbjct: 234 ----AESLVKKREYDGKIGHTTSGPHKADIRLKINGVNAQELL---SRGQLRMAVAALQM 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 A L + T I LLD++ A LD DKR + D+ +Q+F+T + S + Sbjct: 287 AQTELFNTLTNRKSIFLLDDVGAELDADKRELFIDGLLDMDTQVFVTAIESSQLE 341 >gi|282848763|ref|ZP_06258158.1| putative recombination protein F [Veillonella parvula ATCC 17745] gi|282581549|gb|EFB86937.1| putative recombination protein F [Veillonella parvula ATCC 17745] Length = 366 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 163/368 (44%), Gaps = 34/368 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY +++ F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + E + ++IKL + + +R +N+ I EL L Sbjct: 61 LMFNAEE-AGIVVKFEKKDTPQKVNIKLFRQGPKDIR---LNETKIS-QKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P ++ G RRRFLD + + +++ + RL++ RN +L E ++ Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175 Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236 W + A MA VK + ++ IN L L+ LTG L+ + Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222 Query: 237 DQSFCALKE-EYAKKLFDGR-----KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +Q + EY K+ F R D T +GPHR DL + D GS G Sbjct: 223 EQPYMDNGSLEYTKEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQG 281 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + L+ I + G P+LLLD++ + LDE +R L + + Q F+T T Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFIHK-RIQTFITTT 340 Query: 351 DKSVFDSL 358 D F L Sbjct: 341 DIHDFKDL 348 >gi|315174179|gb|EFU18196.1| recombination protein F [Enterococcus faecalis TX1346] Length = 375 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 166/355 (46%), Gaps = 18/355 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A++ G+ ++ LE R +N + + + L + Sbjct: 61 --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTMVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235 + + Q+AE G K+ AR+ + L QK H + +LT Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 D S AL+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ Sbjct: 234 TDLSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + I LA L+ + TG P+LLLD++ + LD +++ L + + Q F+T T Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346 >gi|302380115|ref|ZP_07268588.1| DNA replication and repair protein RecF [Finegoldia magna ACS-171-V-Col3] gi|302312057|gb|EFK94065.1| DNA replication and repair protein RecF [Finegoldia magna ACS-171-V-Col3] Length = 355 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 170/362 (46%), Gaps = 35/362 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +RN+ + L F + VG N GKTNILEAI+ G+ F+ + + + + Sbjct: 3 VQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHLIK 62 Query: 67 IGSPSFFSTFARV------EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 G AR+ +G E DI+IK + + L +N+ + + E N++ Sbjct: 63 FGEDE-----ARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYF 111 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 P +I RR+FLD + +D +R + + +++ RN+L+ ++S Sbjct: 112 ECIVFKPDDLKIIKESKSLRRKFLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNS 171 Query: 181 SWCSSIEA---QMAELGVKINIAR---VEMINALSSLIMEYVQKEN---FPHIKLSLTGF 231 + ++A Q+++ G I R VE ++ ++ + + + EN + K S+ + Sbjct: 172 YFNEQLKALNIQLSDFGSYIMHKRKSYVERLHLIAKNVCKNLSDENDDLYMENKFSIR-Y 230 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 ++ DQ K Y K L D + D +++T +G HR DL V DK S + Sbjct: 231 VEDMTDQ-----KNTYYKSLRDILEKDLENKQTNLGIHRDDLDVLINDKQAKF-FASQAQ 284 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + ++ + LA L PI+LLD++ + LD+ + N + R + D Q F+T ++ Sbjct: 285 VRTAILSMKLAQLDLSRFYNDRMPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSE 342 Query: 352 KS 353 ++ Sbjct: 343 RA 344 >gi|291521104|emb|CBK79397.1| DNA replication and repair protein RecF [Coprococcus catus GD/7] Length = 365 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 154/358 (43%), Gaps = 20/358 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +RNY L + IF GDN GKTN+LEA+ + + R + ++ R Sbjct: 3 VESLALENYRNYVHLSVNLSPGINIFFGDNAQGKTNVLEALYMCATTKSHRGSRDREIIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + E + D+ +K + + I+ + IR EL + + Sbjct: 63 FGEEEAHIRMLLSKEHVRHKIDVHLK-----KNKSKGIAIDGIPIRKSGELFGLVHMICF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + ERRRFLD + +D + + ++ +++ RN LL + FDS+ + Sbjct: 118 SPEDLAMIKNGPGERRRFLDLELCQLDKVYLHNISNYNKIVNQRNNLLKQIGFDSALKDT 177 Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFC 241 ++ QM G K+ R I L+ E I LTG + + Sbjct: 178 LDIWDMQMVNYGRKVIETRRLFIAQLN---------EWLEQIHGRLTGNREKLRLVYQPS 228 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 E++ + L R D + + GPHR D + + I GS G+Q+ + + L Sbjct: 229 TEPEDFERVLLSKRDQDIRMKMSGTGPHRDDFLFMVGEVDIR-KFGSQGQQRTAALSLKL 287 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 A L+ + G P+LLLD++ + LD ++N L + DI + I TG D+ V N Sbjct: 288 AEIELVRQSIGDEPVLLLDDVLSELDSSRQNYLLDCIKDIQTVITCTGLDEFVNHRFN 345 >gi|257065524|ref|YP_003151780.1| DNA replication and repair protein RecF [Anaerococcus prevotii DSM 20548] gi|256797404|gb|ACV28059.1| DNA replication and repair protein RecF [Anaerococcus prevotii DSM 20548] Length = 359 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 158/352 (44%), Gaps = 21/352 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK L ++ FRNY + F+ IF+GDN GKTN+LE++ +L+ F++ D+ Sbjct: 1 MRIKDLKLNNFRNYFYENVEFNKDSNIFIGDNAQGKTNLLESVYYLANASSFKKIRDKDI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G S + ++ I+++ D + + +N V +L +I Sbjct: 61 VRFGQ-SQMKLAGTIRKGRSFKEVFIEVKDND----KSIFVNGVKYDRRKDLRSLFKIVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDSS 181 P I RR +D ++ ID ++ D+++++ RN+LL + YF Sbjct: 116 FTPEDLGIIKDGPNRRRDLIDEIIEEIDLSYKANKRDYDKILYQRNKLLKKQKAPYF-KE 174 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQS 239 + + + +L KI R + I + E+ EN +KLS ++ K S Sbjct: 175 QLEAFDKSLTKLSYKIYKTRDKFIKIVDKFASEFHSSLTENKEELKLSYKADIEAK---S 231 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 EY + R +D + G HR ++ + K T + S G+Q+ ++ I Sbjct: 232 LT----EYEEVFRSARDLDFKYLTSQRGIHRDEIEISINGKN-TKSFASQGQQRSAILNI 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LA RLI TG ++L D++ + LDE + ++F + G Q +T T+ Sbjct: 287 RLAEVRLIKEVTGDEAVILFDDVFSELDE--KRSMFLLENLKGFQTIITATN 336 >gi|269797073|ref|YP_003310973.1| DNA replication and repair protein RecF [Veillonella parvula DSM 2008] gi|269093702|gb|ACZ23693.1| DNA replication and repair protein RecF [Veillonella parvula DSM 2008] Length = 366 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 96/368 (26%), Positives = 163/368 (44%), Gaps = 34/368 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY +++ F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + E + ++IKL + + +R +ND I EL L Sbjct: 61 LMFNAEE-AGIVVKFEKKDTPQKVNIKLFRQGAKDIR---LNDTKIS-QKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P ++ G RRRFLD + + +++ + RL++ RN +L E ++ Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175 Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236 W + A MA VK + ++ IN L L+ LTG L+ + Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222 Query: 237 DQSFC------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +Q + KE + +++ D T +GPHR DL + D GS G Sbjct: 223 EQPYMDNGSLEYTKEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQG 281 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ ++ + L+ I + G P+LLLD++ + LDE +R L + + Q F+T T Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRVNLLQFIHK-RIQTFITTT 340 Query: 351 DKSVFDSL 358 D F L Sbjct: 341 DIHDFKDL 348 >gi|56707876|ref|YP_169772.1| DNA replication and repair protein recF [Francisella tularensis subsp. tularensis SCHU S4] gi|110670347|ref|YP_666904.1| DNA replication and repair protein recF [Francisella tularensis subsp. tularensis FSC198] gi|134301718|ref|YP_001121686.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis WY96-3418] gi|224456955|ref|ZP_03665428.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis MA00-2987] gi|254370369|ref|ZP_04986374.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis FSC033] gi|254874691|ref|ZP_05247401.1| recF, DNA replication and repair protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81597652|sp|Q5NGS0|RECF_FRATT RecName: Full=DNA replication and repair protein recF gi|123359518|sp|Q14I72|RECF_FRAT1 RecName: Full=DNA replication and repair protein recF gi|259563660|sp|A4IXB4|RECF_FRATW RecName: Full=DNA replication and repair protein recF gi|56604368|emb|CAG45395.1| DNA replication and repair protein recF [Francisella tularensis subsp. tularensis SCHU S4] gi|110320680|emb|CAL08778.1| DNA replication and repair protein recF [Francisella tularensis subsp. tularensis FSC198] gi|134049495|gb|ABO46566.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis WY96-3418] gi|151568612|gb|EDN34266.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis FSC033] gi|254840690|gb|EET19126.1| recF, DNA replication and repair protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159059|gb|ADA78450.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis NE061598] gi|328676814|gb|AEB27684.1| DNA recombination and repair protein RecF [Francisella cf. novicida Fx1] Length = 349 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 15/356 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN + F VG NG GKT+ILE+I FLS R FR + + + Sbjct: 6 LRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHNA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F + + + +I+I L +R S ++N + + E+ ++L I + P Sbjct: 66 DEFI-IYTKAYNPD---EITISL-SRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPES 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 I + + +R + LD F +D + + L++ RN L + Y S+ SI+ + Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNY-PYSYILSIDKK 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + E ++ R L I E + N P+++L + F +S + EE Sbjct: 180 LCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKSLAQVLEE--- 235 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 D+ + T GPH++D+++ K I S G+QK+++ + LA + ++ Sbjct: 236 ----SFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQGEIHNS 290 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 I L+D+I++ LD LF + + SQ+F+T T+K+ + +T ++ Sbjct: 291 ENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSYI 346 >gi|167766861|ref|ZP_02438914.1| hypothetical protein CLOSS21_01378 [Clostridium sp. SS2/1] gi|167711409|gb|EDS21988.1| hypothetical protein CLOSS21_01378 [Clostridium sp. SS2/1] gi|291558401|emb|CBL37201.1| DNA replication and repair protein RecF [butyrate-producing bacterium SSC/2] Length = 361 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 91/356 (25%), Positives = 163/356 (45%), Gaps = 30/356 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +RNY L + F + + GDN GKTNILE+I + + R ++ + Sbjct: 3 IKSLELKNYRNYDELSMNFASGTNLLYGDNAQGKTNILESIYLSATTKSHRGNKDRELIK 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + + +G++ D+ +K + + I+ + IR +L + + Sbjct: 63 FEENEAHIRIHFEKQGIDHQLDMHLK-----KNKAKGVAIDRIPIRRSSDLLGQIPVILF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I ERR+FLD + ++ + ++ ++ +++ RN LL + F ++ + Sbjct: 118 SPEDLKIVKSGPSERRKFLDIELSQMERLYLYQLTNYNKILVQRNNLLKQIRFQNNLIET 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-----FLDGKFD 237 +EA Q+ + G ++ R + I L E QK I LTG L+ D Sbjct: 178 LEAWDIQLVKYGSEVIKYREKFIKHLG----EVCQK-----IHNKLTGGKEKILLEYDRD 228 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVL 296 + + E AKK R+ D T +GPHR D + + I I +GS G+Q+ Sbjct: 229 VGYDSYLTELAKK----RQKDLKYSTTTVGPHRDD--ISFIVNGIDIRKYGSQGQQRTAA 282 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + LA +L+ +PILLLD++ + LD +++ L + D + I TG D+ Sbjct: 283 LSLKLAQIQLMREVMKESPILLLDDVLSELDSNRKTYLLESIKDTQTIITCTGLDE 338 >gi|28376978|ref|NP_783870.1| recombination protein F [Lactobacillus plantarum WCFS1] gi|254555173|ref|YP_003061590.1| recombination protein F [Lactobacillus plantarum JDM1] gi|300769109|ref|ZP_07078998.1| recombination protein F [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179195|ref|YP_003923323.1| recombination protein F [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258550|sp|Q890K5|RECF_LACPL RecName: Full=DNA replication and repair protein recF gi|28269809|emb|CAD62706.1| DNA repair and genetic recombination protein RecF [Lactobacillus plantarum WCFS1] gi|254044100|gb|ACT60893.1| recombination protein F [Lactobacillus plantarum JDM1] gi|300493349|gb|EFK28528.1| recombination protein F [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044686|gb|ADN97229.1| recombination protein F [Lactobacillus plantarum subsp. plantarum ST-III] Length = 374 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 162/353 (45%), Gaps = 29/353 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRNYA L + F + +G+N GKTN+LEAI L+ R R A+ ++ R Sbjct: 6 LVLHDFRNYADLTINFSQGVNVLLGENAQGKTNLLEAIYVLALTRSHRTANDKELIR--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + +T A ++G + ++ LE R + ++N + + + +L + P Sbjct: 63 --WQTTTATLQGRLHKSTGAVPLELELGRRGKRAKVNHLEQAKLSQYVGNLNVIVFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 I G RRRF+D + P++ + + +++ RN+ L + D + Sbjct: 121 LSIVKGAPAVRRRFMDMEFGQMSPKYLYNLSQYRTILKQRNQYLRQLNRQQAKDKVYLGV 180 Query: 186 IEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTG---FLDGK 235 + Q+A G +I R++++ A+ S I + ++ F ++ T +D Sbjct: 181 LSDQLAAFGAEIIHKRLQLLQQLEKWAQAVHSEITQEQEQLTFHYVTQVPTADQTSVDHI 240 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + +++ AK++F G TL+GPHR DL K + GS G+Q+ Sbjct: 241 YQTLQALYQQQQAKEIFQG--------TTLLGPHRDDLQFGVNGKNVQ-TFGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + + LA L+ TG P+LLLD++ + LD ++ L + D Q F+T Sbjct: 292 ALSVKLAEIDLMKAETGEYPVLLLDDVLSELDAARQTHLLTAIQD-KVQTFLT 343 >gi|229035150|ref|ZP_04189096.1| DNA replication and repair protein recF [Bacillus cereus AH1271] gi|228728216|gb|EEL79246.1| DNA replication and repair protein recF [Bacillus cereus AH1271] Length = 375 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|154496130|ref|ZP_02034826.1| hypothetical protein BACCAP_00414 [Bacteroides capillosus ATCC 29799] gi|150274685|gb|EDN01749.1| hypothetical protein BACCAP_00414 [Bacteroides capillosus ATCC 29799] Length = 367 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 102/383 (26%), Positives = 166/383 (43%), Gaps = 42/383 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-ADVT 65 +K + + FRNY L F + G+N GKTN+LEAI +LS RRA Y ++ Sbjct: 3 VKSITLDFFRNYPHLETAFSPDVNVICGENAQGKTNLLEAIGYLSTASS-RRARYDRELI 61 Query: 66 RIGSPSFF---STFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLR 121 + G F F+R + LE R RSV R L N V ++ EL L Sbjct: 62 QFGVDHAFVKAEVFSR--------ERDFTLEARLGRSVRRQLLSNGVKLKTAGELAGVLN 113 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + P + + ERRRFLD + + PR+ + ++ RL + R+L + S Sbjct: 114 TVFFCPEDLMLIREGAAERRRFLDECICQLRPRYAAALAEYRRLHEQKTRILRDWEEKPS 173 Query: 182 WCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGK 235 +++ +MA+ G + R + L +E P I +G L K Sbjct: 174 LLDTLDDFNLRMAQTGAILIHYRAHFVRRL---------RETAPPIHREFSGGREELGLK 224 Query: 236 FDQ-SFCALKEEYAKKLFDG--------RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 ++ S E K + R+ + +R+ L GPH+ DL V+ A Sbjct: 225 YETVSTVTDPEGGVKDILSALIAHQESHRRAELEARQCLSGPHKDDLTVELGGVAAR-QF 283 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S G+ + + + LA + TG P+LLLD++ + LD+ +++ + + G Q+F Sbjct: 284 ASQGQTRTAALSLKLAAREIFYGDTGEWPVLLLDDVLSELDQRRQSFVLNRIK--GGQVF 341 Query: 347 MTGTDKSVFDSLNETAKFMRISN 369 +T + + L E K +RI N Sbjct: 342 ITCCEDEKLEHL-EGGKVLRIHN 363 >gi|300742654|ref|ZP_07072675.1| RecF protein [Rothia dentocariosa M567] gi|300381839|gb|EFJ78401.1| RecF protein [Rothia dentocariosa M567] Length = 403 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 103/402 (25%), Positives = 168/402 (41%), Gaps = 54/402 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ ++R Y L L A T+F+G NGVGKTNI+EAI + + R + + R Sbjct: 3 LDHLSLLDYRTYPLLNLPLSAGVTVFLGPNGVGKTNIIEAIDYTANLSSHRVSHDGPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 +G+ + RV + G + E S R +IN E R Sbjct: 63 VGAS---RAYIRVRTVRGSQQTVTEFEIAPGASNRV-RINRAAPVRAREALGITRTVLFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P ++ G RRRF+D + ++ P ++ER++R RN LL S + Sbjct: 119 PEDLQLVKGEPAGRRRFIDDLAVSLRPVVAGYRQEYERILRQRNSLLKTLQRRGSLAADD 178 Query: 187 E----------AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 E Q+A+LG ++ AR ++ L PH++ + G DG Sbjct: 179 ENAMHTLDVWSEQLAQLGAQLLAARFRVLWLL------------LPHLRRAYAGLTDGSK 226 Query: 237 DQSFCA-----------------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 D SF +K+ A++L + R + TL+GPHR D+ Sbjct: 227 DISFTYDSTVFPEITERGLEHVSRMSIDDIKDAMAQRLRERRAAELERGVTLVGPHRDDI 286 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAH---ARLISNTTGFAPILLLDEISAHLDEDK 330 + A+ S GE V + + LA R ++ G +PIL+LD++ A LD ++ Sbjct: 287 TLLLGGLAVK-QFASHGESWSVALSLRLASWFVHRADDDSPGSSPILILDDVFAELDSER 345 Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 R+ L +V Q+ +T S T + +R+S A Sbjct: 346 RHRLGALVAQ-AEQVLLTSAVLSDIPEELGTYRLVRVSAAHA 386 >gi|146305045|ref|YP_001185510.1| recombination protein F [Pseudomonas mendocina ymp] gi|166220724|sp|A4XN62|RECF_PSEMY RecName: Full=DNA replication and repair protein recF gi|145573246|gb|ABP82778.1| DNA replication and repair protein RecF [Pseudomonas mendocina ymp] Length = 367 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 158/350 (45%), Gaps = 24/350 (6%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 ++ RN + L + I G NG GKT++LEAI L R FR V P+ Sbjct: 8 VTAVRNLHPVTLSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSTRLQPVIHYEQPA 67 Query: 72 FFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130 + F +V+ EG +++ I +RD + ++I+ R +L L + + P Sbjct: 68 C-TVFGQVQLAEGGSSNLGI---SRDRQGELQIRIDGQNARSAAQLADLLPLQLINPDSF 123 Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190 R+ G RR+FLD VF ++ R ++ +R RN L G D + ++ + ++ Sbjct: 124 RLLEGAPKIRRQFLDWGVFHVEHRFLGAWQRLQKALRQRNSWLRHGTLDGASQAAWDREL 183 Query: 191 AELGVKINIARVEMINALSSL----IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 +I+ R I AL + + E +Q E L+L+ + D+ L E Sbjct: 184 CSASQEIDTYRRAYIQALKPVFERTLAELLQLEG-----LTLSYYRGWDKDRE---LSEV 235 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHAR 305 A L +++ T GP R+DL + A I S G+QK+V+ + +A Sbjct: 236 LASSLLRDQQLG----HTQAGPQRADLRLRLAGHNAAEIL--SRGQQKLVVCALRIAQGH 289 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L++ I L+D++ + LDE R AL R++ D+ Q+F+T D + Sbjct: 290 LVNEAKRGQCIYLVDDLPSELDEQHRQALCRLLEDLHCQVFITCVDHELL 339 >gi|56459115|ref|YP_154396.1| recombinational DNA repair ATPase [Idiomarina loihiensis L2TR] gi|81678377|sp|Q5QY37|RECF_IDILO RecName: Full=DNA replication and repair protein recF gi|56178125|gb|AAV80847.1| Recombinational DNA repair ATPase [Idiomarina loihiensis L2TR] Length = 354 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 94/373 (25%), Positives = 177/373 (47%), Gaps = 36/373 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ LN+S FRN++ + L + I GDNG GKT++LEAI L GR FR + + + Sbjct: 3 IETLNLSHFRNFSEVALSPSPKINIITGDNGSGKTSLLEAIYLLGFGRSFRPGGFRQLIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ S F+ F R + I ++ T ++S+R +N ++ + ++ + + + L Sbjct: 63 EGN-SGFTVFCRSQDYA----IGVRRSTDGEQSLR---LNGANVQRMSDVARLVPVQLLT 114 Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSS 181 P S+D + G +RR+F+D VF ++ + + +L++ RN LL + D Sbjct: 115 PESVDILLEGPG-QRRQFIDWGVFHVEHSFYSDWVAYTQLLKQRNSLLKQRSLPVREDRY 173 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS-- 239 W + Q+A G +I+ +R + + L+ I E + K + + + L +D S Sbjct: 174 W----KEQLAYYGERISKSREKYLEELNDYIQE-LAKSFLSDVTMEVR--LKSGWDTSQS 226 Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLV 297 F AL+ K D T +G H++D+ V + + H S G+ K + Sbjct: 227 LFDALESHTEK--------DKKYGFTSVGAHKADIKV--IADGVEVKHRLSRGQLKTAIT 276 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFD 356 + LA + I L+D++++ LD + L R + ++ +Q+F+T T K + D Sbjct: 277 ALKLAQGKHYQKIKRQPCIYLVDDLTSELDSKNQALLCRELENLDAQVFITAITGKQLSD 336 Query: 357 SLNETAKFMRISN 369 ++ + + + Sbjct: 337 KFQKSPRMFHVEH 349 >gi|227511155|ref|ZP_03941204.1| recombination protein F [Lactobacillus buchneri ATCC 11577] gi|227085637|gb|EEI20949.1| recombination protein F [Lactobacillus buchneri ATCC 11577] Length = 373 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 96/374 (25%), Positives = 166/374 (44%), Gaps = 18/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++K + + FRNY L F +F+G+N GKTN+LEAI L+ R R ++ ++ Sbjct: 1 MRLKDIALHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + ++ G I + L T+ R+ +IN + + L + Sbjct: 61 INWQSQTA-QLKGTIQKQLGKVPIELDLGTKGKRA----KINHLEQAKLSSYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RR+F+D + R+ +++++R RNR L + D Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQS 239 + + Q++ G +I R++++ L + V E K +LT D+ Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGF-AKNVHTE-ISQGKEALTFLYQTAVPDEQ 233 Query: 240 FCALKEEYA---KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +++ Y K+ D ++ + TL+GPHR DL K + + GS G+Q+ Sbjct: 234 LTSIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEVQ-SFGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VF 355 + + LA L+ T PILLLD++ + LD+ ++ L + D Q F+T T S V Sbjct: 293 LSVKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQD-KVQTFLTTTSLSGVQ 351 Query: 356 DSLNETAKFMRISN 369 L K RI+N Sbjct: 352 QELLSNPKIFRIAN 365 >gi|300857420|ref|YP_003782403.1| DNA replication and repair protein [Corynebacterium pseudotuberculosis FRC41] gi|300684874|gb|ADK27796.1| DNA replication and repair protein [Corynebacterium pseudotuberculosis FRC41] Length = 421 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 170/385 (44%), Gaps = 38/385 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L++ +FR++A + + T+FVG NG GKTNI+EAI +++ R + + + Sbjct: 18 VYIRELSLRDFRSWADCHVNLEPGVTVFVGRNGFGKTNIVEAIGYIAHLGSHRVSQDSPL 77 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G S S A +G E A + IK + QIN ++ L +R Sbjct: 78 VHQGKDSARVSVTAVNQGRELTAHMLIK-----SKGTNQAQINRTRLKSPRGLLGVVRTV 132 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 P + G ERRR+LD +V PR D++++++ RN LL Sbjct: 133 LFSPEDLSLVRGEPGERRRYLDHIVATRKPRLAGVKADYDKVLKQRNSLLKTASASLRRG 192 Query: 176 -GYFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP------- 222 G D + C+ +AQ+A LG ++ AR ++ L+ L+ + E+ P Sbjct: 193 YGADDGTLCTLDVWDAQLARLGSELIHARHSLVEELTPLVHSAYARIAPESRPARINYES 252 Query: 223 --HIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV---D 276 + +++T + L+ +L RK + TL+GPHR DL V D Sbjct: 253 TVPVPVAVTDAEEASSSIPDLDVLEASMLSQLGVQRKKEIDRGLTLVGPHRDDLAVLLGD 312 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 Y K + S GE + + + LA L+S G PIL+LD++ A LD +R L Sbjct: 313 YPAKG----YASHGETWSMALALRLAEFHLLS-ADGSEPILILDDVFAELDSKRRQKLVG 367 Query: 337 IVTDIGSQIFMTGTDKSVFDSLNET 361 I + + + D+L E+ Sbjct: 368 IAMEAEQVLITAAVGDDLPDNLAES 392 >gi|56418539|ref|YP_145857.1| recombination protein F [Geobacillus kaustophilus HTA426] gi|81675966|sp|Q5L3Y9|RECF_GEOKA RecName: Full=DNA replication and repair protein recF gi|56378381|dbj|BAD74289.1| DNA replication and repair protein [Geobacillus kaustophilus HTA426] Length = 372 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/366 (24%), Positives = 159/366 (43%), Gaps = 21/366 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L ++ +RNY L F + +G+N GKTN++EAI L+ + R ++ D+ R Sbjct: 6 LTLTNYRNYEYETLNFGEGVNVILGENAQGKTNMMEAIYVLAMAKSHRTSNDKDLIR--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG S+ LE ++ + RC N + + + + HL + Sbjct: 63 --WNEEYAKIEGRAEKRSGSLTLELLISKKGKKARC---NHIEQQRLSQYVGHLNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRF+D + + P + + +++L++ RN L D + Sbjct: 118 PEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQARERSDEAV 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIM--EYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ L KI + R + ++ L M Y + + +D Sbjct: 178 LDVLTEQLVLLAAKITLRRRQFLSLLEQWAMPIHYEISRGAEQLCIRYEPSVDVSEKAEL 237 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + E Y++ R+ + TL+GPHR D I + + GS G+Q+ + + Sbjct: 238 SRIVEAYSETFAAMREREVQRGTTLVGPHRDD-IAFFVNGKNVQTFGSQGQQRTTALAVK 296 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSL 358 LA LI + G PILLLD++ + LD+ ++ L + Q F+T T D D + Sbjct: 297 LAELELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRK-KVQTFVTTTSIDGIKHDII 355 Query: 359 NETAKF 364 E A + Sbjct: 356 QEAAIY 361 >gi|228961756|ref|ZP_04123359.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797950|gb|EEM44960.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 375 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRSTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|229176168|ref|ZP_04303660.1| DNA replication and repair protein recF [Bacillus cereus MM3] gi|228607327|gb|EEK64657.1| DNA replication and repair protein recF [Bacillus cereus MM3] Length = 375 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|293400052|ref|ZP_06644198.1| DNA replication and repair protein RecF [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306452|gb|EFE47695.1| DNA replication and repair protein RecF [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 366 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 92/355 (25%), Positives = 167/355 (47%), Gaps = 19/355 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + + +FRNY L+ VF + G N GKTN+LEA+ +LS R R + D+ Sbjct: 1 MRVSEIRLHDFRNYEDLQAVFSDGIHVLAGKNAQGKTNLLEALLYLSTTRSHRTNTDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +FF A++E DI I T +++ + V RV D + + + + Sbjct: 61 IREKSEAFFIR-AKIEKEHKKEDIQI---TVNEKGKNLFIYQNPVNRVSDFIGEFNAVMF 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 M +F+ RRRF+D + I ++ + +L++ RN L + + D ++ Sbjct: 117 CPDDMS-LFNASPRVRRRFVDMELSKISKKYVSTLYVALKLLKERNAYLKQEHVDKAYLE 175 Query: 185 SIEAQMAELGVKINIAR----VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + +Q+ E V I R E++ E Q + +I D + Sbjct: 176 VLTSQLIEEEVVIIRQRHYFLKELLEKCQKFYKELSQDDTLLNISYDSCIPFDEDKNVMK 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ALK++YAK L D ++T+IG H+ D DK + + S G+++ VL+ + Sbjct: 236 EALKKKYAKHL----ARDIYLKQTIIGIHKEDFTFMINDKDLA-TYASQGQKRSVLLALK 290 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKS 353 + +I + P+LLLD++ + LD +R +++T + + QIF++ TD + Sbjct: 291 IGMVYMIRDIIQEFPVLLLDDVFSELDVYRRE---KLLTSLPAEVQIFISTTDTT 342 >gi|70733516|ref|YP_257155.1| recombination protein F [Pseudomonas fluorescens Pf-5] gi|97180867|sp|Q4KKS8|RECF_PSEF5 RecName: Full=DNA replication and repair protein recF gi|68347815|gb|AAY95421.1| DNA replication and repair protein RecF [Pseudomonas fluorescens Pf-5] Length = 367 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 93/347 (26%), Positives = 160/347 (46%), Gaps = 14/347 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + + + G NG GKT++LEAI L R FR A V + Sbjct: 6 VSVTAVRNLHPVTFSPSPRINLLYGANGSGKTSVLEAIHLLGLARSFRSARLLPVIQYEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + + F +VE +G S+ + +RD + ++I+ R +L + L + + P Sbjct: 66 LAC-TVFGQVELAQG-GHSSLGI-SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPDS 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 R+ G RR+FLD VF ++PR ++ +R RN L G D++ ++ + + Sbjct: 123 FRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALRQRNSWLRHGTLDAASQAAWDRE 182 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + + +I+ R I AL + E E L+L+ + D+ L E A Sbjct: 183 LCQASAEIDEYRRAYIKALKP-VFERTLGELLQLEGLTLSYYRGWDKDRE---LSEVLAT 238 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L ++M T GP R+DL + A I S G+QK+V+ + +A L+S Sbjct: 239 ALHRDQQMGH----TQAGPQRADLRLRLGGHNAADIL--SRGQQKLVVCALRIAQGHLVS 292 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 I L+D++ + LDE R AL R++ D+ Q+F+T D + Sbjct: 293 QARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELL 339 >gi|118497329|ref|YP_898379.1| RecFOR complex, RecF component [Francisella tularensis subsp. novicida U112] gi|195536015|ref|ZP_03079022.1| RecF/RecN/SMC N domain protein, putative [Francisella tularensis subsp. novicida FTE] gi|208779116|ref|ZP_03246462.1| RecF/RecN/SMC N domain protein, putative [Francisella novicida FTG] gi|254372694|ref|ZP_04988183.1| RecFOR complex [Francisella tularensis subsp. novicida GA99-3549] gi|254374152|ref|ZP_04989634.1| DNA replication and repair protein recF [Francisella novicida GA99-3548] gi|259563659|sp|A0Q5W0|RECF_FRATN RecName: Full=DNA replication and repair protein recF gi|118423235|gb|ABK89625.1| RecFOR complex, RecF component [Francisella novicida U112] gi|151570421|gb|EDN36075.1| RecFOR complex [Francisella novicida GA99-3549] gi|151571872|gb|EDN37526.1| DNA replication and repair protein recF [Francisella novicida GA99-3548] gi|194372492|gb|EDX27203.1| RecF/RecN/SMC N domain protein, putative [Francisella tularensis subsp. novicida FTE] gi|208744916|gb|EDZ91214.1| RecF/RecN/SMC N domain protein, putative [Francisella novicida FTG] Length = 349 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 15/356 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN + F VG NG GKT+ILE+I FLS R FR + + + Sbjct: 6 LRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHNA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F + + + +I+I L +R S ++N + + E+ ++L I + P Sbjct: 66 DEFI-IYTKAYNPD---EITISL-SRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPES 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 I + + +R + LD F +D + + L++ RN L + Y S+ SI+ + Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNY-PYSYILSIDKK 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + E ++ R L I E + N P+++L + F +S + EE Sbjct: 180 LCEFAEILDYKRHAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKSLAQVLEE--- 235 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 D+ + T GPH++D+++ K I S G+QK+++ + LA + ++ Sbjct: 236 ----SFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQGEIHNS 290 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 I L+D+I++ LD LF + + SQ+F+T T+K+ + +T ++ Sbjct: 291 ENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSYI 346 >gi|25026560|ref|NP_736614.1| recombination protein F [Corynebacterium efficiens YS-314] gi|259508308|ref|ZP_05751208.1| RecF protein [Corynebacterium efficiens YS-314] gi|51316473|sp|Q8FUL4|RECF_COREF RecName: Full=DNA replication and repair protein recF gi|23491839|dbj|BAC16814.1| putative DNA replication and repair protein RecF [Corynebacterium efficiens YS-314] gi|259164126|gb|EEW48680.1| RecF protein [Corynebacterium efficiens YS-314] Length = 398 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 102/370 (27%), Positives = 165/370 (44%), Gaps = 40/370 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + +FR++ L++ TIF+G NG GKTNI+EAI +L+ R ++ A + R Sbjct: 3 IRSLELRDFRSWPELKVELKPGITIFIGRNGFGKTNIVEAIGYLAHLSSHRVSTDAPLVR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + + S A +G E A + IK + QIN ++ EL ++ Sbjct: 63 ANAGDARISAVAVNQGRELAAHLLIK-----PHAANQGQINRTRVKSPRELLGVIKTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYF 178 P + G ERRR+LD ++ PR D++++++ RN LL GY Sbjct: 118 APEDLALVRGEPAERRRYLDDIIATRRPRMAGVKADYDKVLKQRNALLKTATIALRRGYG 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFPH------ 223 +++ + Q+A LG ++ AR ++ LSS I + Q E+ P Sbjct: 178 TEEGAAALATLDTWDGQLARLGAEVMAARFALVQDLSSQIRDAYQTIAPESRPAAVNYKT 237 Query: 224 -IKLSLTGFLDGKFDQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 I L F G+FD L E A K R+ + +L+GPHR DL + + Sbjct: 238 TIDQGLAQF--GEFDAGIIEATLLTELAAK----RQREIERGMSLVGPHRDDLELHLGGQ 291 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 S GE + + +A L+ + G PIL+LD++ + LD +R L I D Sbjct: 292 PAK-GFASHGETWSFALSMRIAEFNLL-RSDGTDPILILDDVFSELDAGRREKLVGIARD 349 Query: 341 IGSQIFMTGT 350 Q+ +T Sbjct: 350 -AEQVIITAA 358 >gi|169823701|ref|YP_001691312.1| DNA replication and repair protein [Finegoldia magna ATCC 29328] gi|303234454|ref|ZP_07321092.1| DNA replication and repair protein RecF [Finegoldia magna BVS033A4] gi|167830506|dbj|BAG07422.1| DNA replication and repair protein [Finegoldia magna ATCC 29328] gi|302494409|gb|EFL54177.1| DNA replication and repair protein RecF [Finegoldia magna BVS033A4] Length = 355 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 170/362 (46%), Gaps = 35/362 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +RN+ + L F + VG N GKTNILEAI+ G+ F+ + + + + Sbjct: 3 VQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHLIK 62 Query: 67 IGSPSFFSTFARV------EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 G AR+ +G E DI+IK + + L +N+ + + E N++ Sbjct: 63 FGEDE-----ARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYF 111 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 P +I RR+FLD + +D +R + + +++ RN+L+ ++S Sbjct: 112 ECIVFKPDDLKIIKESKSLRRKFLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNS 171 Query: 181 SWCSSIEA---QMAELGVKINIAR---VEMINALSSLIMEYVQKEN---FPHIKLSLTGF 231 + ++A Q+++ G I R VE ++ ++ + + + EN + K S+ + Sbjct: 172 YFNEQLKALNIQLSDFGSYIMHKRKSYVERLHLIAKNVCKNLSDENDDLYMENKFSIR-Y 230 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 ++ DQ K Y K L D + D +++T +G HR DL + DK S + Sbjct: 231 VEDMTDQ-----KNTYYKSLRDILEKDLENKQTNLGIHRDDLDILINDKQAKF-FASQAQ 284 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + ++ + LA L PI+LLD++ + LD+ + N + R + D Q F+T ++ Sbjct: 285 VRTAILSMKLAQLDLSRFYNDRMPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSE 342 Query: 352 KS 353 ++ Sbjct: 343 RA 344 >gi|229164443|ref|ZP_04292371.1| DNA replication and repair protein recF [Bacillus cereus R309803] gi|228619048|gb|EEK75946.1| DNA replication and repair protein recF [Bacillus cereus R309803] Length = 375 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEEFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGTKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|297588054|ref|ZP_06946698.1| recombination protein F [Finegoldia magna ATCC 53516] gi|297574743|gb|EFH93463.1| recombination protein F [Finegoldia magna ATCC 53516] Length = 355 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/359 (24%), Positives = 165/359 (45%), Gaps = 29/359 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +RN+ + L F + VG N GKTNILEAI+ G+ F+ + + + + Sbjct: 3 VQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHLIK 62 Query: 67 IGSPSFFSTFARV------EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 G AR+ +G E DI+IK + + L +N+ + + E N++ Sbjct: 63 FGEDE-----ARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYF 111 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 P +I RR+ LD + +D +R + + +++ RN+L+ ++S Sbjct: 112 ECIVFKPDDLKIVKESKSLRRKLLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNS 171 Query: 181 SWCSSIEA---QMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + ++A Q+A+ G I R VE ++ ++ + + EN KL + Sbjct: 172 YFNEQLKALNIQLADNGSYIMHKRKSYVERLHLIAKNVCSNLSDEN---DKLDMENNFSI 228 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 ++ + K Y K L D D +++T +G HR DL + DK+ S + + Sbjct: 229 EYVEDMTNQKNTYYKSLVDILDKDLENKQTNLGIHRDDLDILINDKSAKF-FASQAQVRT 287 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 ++ + LA L PI+LLD++ + LD+ + N + R + D Q F+T ++++ Sbjct: 288 AILSMKLAQLDLSRFYNDRLPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSERA 344 >gi|256957012|ref|ZP_05561183.1| RecF protein [Enterococcus faecalis DS5] gi|256947508|gb|EEU64140.1| RecF protein [Enterococcus faecalis DS5] gi|315036376|gb|EFT48308.1| recombination protein F [Enterococcus faecalis TX0027] Length = 375 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/355 (24%), Positives = 166/355 (46%), Gaps = 18/355 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235 + + Q+AE G K+ AR+ + L QK H + +LT Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 D S L+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ Sbjct: 234 TDLSLETLQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + I LA L+ + TG P+LLLD++ + LD +++ L + + Q F+T T Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346 >gi|187931536|ref|YP_001891520.1| RecFOR complex, RecF component [Francisella tularensis subsp. mediasiatica FSC147] gi|259563658|sp|B2SG84|RECF_FRATM RecName: Full=DNA replication and repair protein recF gi|187712445|gb|ACD30742.1| RecFOR complex, RecF component [Francisella tularensis subsp. mediasiatica FSC147] Length = 349 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 15/356 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN + F VG NG GKT+ILE+I FLS R FR + + + Sbjct: 6 LRLQNFRNIHAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHNA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F + + + +I+I L +R S ++N + + E+ ++L I + P Sbjct: 66 DEFI-IYTKAYNPD---EITISL-SRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPES 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 I + + +R + LD F +D + + L++ RN L + Y S+ SI+ + Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNY-PYSYILSIDKK 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + E ++ R L I E + N P+++L + F +S + EE Sbjct: 180 LCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKSLAQVLEE--- 235 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 D+ + T GPH++D+++ K I S G+QK+++ + LA + ++ Sbjct: 236 ----SFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQGEIHNS 290 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 I L+D+I++ LD LF + + SQ+F+T T+K+ + +T ++ Sbjct: 291 ENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSYI 346 >gi|290968151|ref|ZP_06559696.1| putative recombination protein F [Megasphaera genomosp. type_1 str. 28L] gi|290781826|gb|EFD94409.1| putative recombination protein F [Megasphaera genomosp. type_1 str. 28L] Length = 367 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 94/367 (25%), Positives = 168/367 (45%), Gaps = 19/367 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + + FRNY ++ L F IF G+NG GKTN+LE++ G+ +R + ++ Sbjct: 1 MKITGVRLFNFRNYKNMELNFHNMIHIFYGNNGQGKTNLLESLYIAGIGKTYRGIADREL 60 Query: 65 TRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R S F R + + I ++ ++ L IN+ + E + Sbjct: 61 IRWEQEEGSIIVRFLRNHVEQQVKIILSRVSSKQ------LWINETKT-IGREFFGSIPE 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 P ++ G RR+F+D + ++ + R ++ + ++ RN LL E +D + Sbjct: 114 ILFSPDDLQLIKGAPSLRRKFMDMELSQVNRMYYRCLLQYNHILAQRNALLKEVRYDKNI 173 Query: 183 C-SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238 + + Q+A L + R+EM+ ++ L + + KE K SL + ++Q Sbjct: 174 SFAEWDTQLAVLAADMVKKRLEMLKKINVL-ADKIHKE-LTQGKESLHVYYKQPYNQDRH 231 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLV 297 + +YA+ L + DS T IGPHR D +C + + S G+Q+ ++ Sbjct: 232 TVILQASQYARLLQENIAADSYKNATSIGPHRDDFT--FCIEGKEAKKYASQGQQRTAIL 289 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA + + G PILLLD++ + LD +R L + V Q F+T TD +F Sbjct: 290 SLKLAELEFVYSEIGEYPILLLDDVMSELDLLRRKQLLQFVHQ-RIQTFITTTDPLLFSM 348 Query: 358 LNETAKF 364 L E ++ Sbjct: 349 LQEGCQW 355 >gi|227523342|ref|ZP_03953391.1| recombination protein F [Lactobacillus hilgardii ATCC 8290] gi|227089448|gb|EEI24760.1| recombination protein F [Lactobacillus hilgardii ATCC 8290] Length = 373 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 98/375 (26%), Positives = 168/375 (44%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++K + + FRNY L F +F+G+N GKTN+LEAI L+ R R ++ ++ Sbjct: 1 MRLKDIALHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + ++ G I + L T+ R+ +IN + + L + Sbjct: 61 INWQSQTA-QLKGTIQKQLGKVPIELDLGTKGKRA----KINHLEQAKLSSYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RR+F+D + R+ +++++R RNR L + D Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQ 238 + + Q++ G +I R++++ L + V E K +LT FL D+ Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGF-AKNVHTE-ISQGKEALT-FLYQTVVPDE 232 Query: 239 SFCALKEEYA---KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 +++ Y K+ D ++ + TL+GPHR DL K + + GS G+Q+ Sbjct: 233 QLTSIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEVQ-SFGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-V 354 + + LA L+ T PILLLD++ + LD+ ++ L + D Q F+T T S V Sbjct: 292 ALSVKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQD-KVQTFLTTTSLSGV 350 Query: 355 FDSLNETAKFMRISN 369 L K RI+N Sbjct: 351 QQELLSNPKIFRIAN 365 >gi|319651102|ref|ZP_08005236.1| DNA replication and repair protein recF [Bacillus sp. 2_A_57_CT2] gi|317397272|gb|EFV77976.1| DNA replication and repair protein recF [Bacillus sp. 2_A_57_CT2] Length = 372 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 166/370 (44%), Gaps = 23/370 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + +RNY L + F+ + + +G+N GKTN++E+I L+ + R ++ D+ R Sbjct: 3 IEQLLLKNYRNYEELEVNFENKVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKDLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + +A++EG S+ ++ ++ + +C N + + + + ++ + Sbjct: 63 -----WDQEYAKIEGRVQKRQGSLPMQLFISKKGKKAKC---NHIEQQKLSQYVGNMNVV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 P + G RRRF+D + + P + + ++++++ RN L + D Sbjct: 115 MFAPEDLHLVKGSPQIRRRFIDMEIGQVSPVYLHDISQYQKILQQRNHYLKMLQIKKQTD 174 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFLDGKF 236 + + Q E+ KI R E + L + I E + + +K+ + Sbjct: 175 HTMLEILTEQFIEMAAKIVSKRYEFLRLLENWAQPIHEGISR-GLETLKIEYKPSAEVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +Q + + Y K + + T+ GPHR DLI + + GS G+Q+ Sbjct: 234 EQDLSKMVKVYQNKFAKVKNREIDRGVTMFGPHRDDLIFHVNGRDVQ-TFGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA LI + G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSVKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGID 351 Query: 357 --SLNETAKF 364 +L E A F Sbjct: 352 HQTLKEAAAF 361 >gi|170719190|ref|YP_001746878.1| recombination protein F [Pseudomonas putida W619] gi|226737821|sp|B1J3Y4|RECF_PSEPW RecName: Full=DNA replication and repair protein recF gi|169757193|gb|ACA70509.1| DNA replication and repair protein RecF [Pseudomonas putida W619] Length = 367 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 160/353 (45%), Gaps = 16/353 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F V+ EG +++ + E D ++R I+ + +L + L + Sbjct: 61 IQYEQAAC-TVFGEVQLSEGGTSNLGVSRERAGDFTIR---IDGQNAKSAAQLAELLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMPAWQRLQKALRQRNSWLRHGTLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + E E L+L+ + D+ L Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFEQTLSELVELDGLTLSYYRGWDKDRE---L 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302 E A L ++M T GP R+DL + + A I S G+QK+V+ + +A Sbjct: 233 NEVLASSLLRDQQMG----HTQAGPQRADLRLRLAANNAADIL--SRGQQKLVVCALRIA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 287 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 339 >gi|323357954|ref|YP_004224350.1| recombinational DNA repair ATPase [Microbacterium testaceum StLB037] gi|323274325|dbj|BAJ74470.1| recombinational DNA repair ATPase [Microbacterium testaceum StLB037] Length = 383 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 96/386 (24%), Positives = 179/386 (46%), Gaps = 25/386 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FRNYA + + +FVG NG GKTN++EA+++L+ R +S A + + Sbjct: 3 VEQLGLRDFRNYAEVDVSLSTGANVFVGRNGQGKTNLVEAVAYLATLGSHRVSSDAPMVK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ + R G + ++L+ S R ++N V +R EL ++ ++ Sbjct: 63 DGTD---AAIVRARLAHGERSVLLELQLNRQGSNRA-RVNGVNVRTA-ELPRYAQVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +I G RRRF D+++ PR + D++R++R R LL ++ Sbjct: 118 PEDLQIVRGDPSARRRFADQLIVQRTPRMAAVVADYDRVLRQRTALLKSARARGVRGDAL 177 Query: 187 ------EAQMAELGVKINIARVEMINALSSLI----MEYVQKENFPHIK--LSLTGFLDG 234 + ++ LG ++ AR+ + + LS + ++ P ++ LS+ G Sbjct: 178 GTLDVWDDKLVTLGTELIEARLALASDLSEPVASAYAAIAGADHEPRLEWALSVGGGDPE 237 Query: 235 KFDQSFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + D + A L E++ L R + TL+GPHR DL++ + + S G Sbjct: 238 EGDAATSAPGGPLAEQFRAALAARRSAELERGLTLVGPHRDDLVLRVRGLPVK-GYASHG 296 Query: 291 EQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 E V + + LA A ++ + P+L+LD++ A LD +R L +V I + Sbjct: 297 ESWSVALALRLASAEILRAESRLGDPVLILDDVFAELDAGRRARLAELVGGYEQVIVTSA 356 Query: 350 TDKSVFDSLNETAKFMRISNHQALCI 375 ++ V D+L A +R+ Q + + Sbjct: 357 VEEDVPDALR--AHVVRVEAGQIVTV 380 >gi|227500983|ref|ZP_03931032.1| possible recombination protein F [Anaerococcus tetradius ATCC 35098] gi|227216756|gb|EEI82154.1| possible recombination protein F [Anaerococcus tetradius ATCC 35098] Length = 359 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 86/349 (24%), Positives = 159/349 (45%), Gaps = 19/349 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L ++ FRNY + F+ IF+GDN GKTN+LE++ +L+ R F++ D+ R Sbjct: 3 IKDLKLNNFRNYFYESVEFNKDTNIFIGDNAQGKTNLLESVYYLANARSFKKIRDKDIVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S V ++ I++ +D + + +N V +L +I Sbjct: 63 F-SQSQMKLAGTVRKGRSFKEVLIEVNDKD----KSIFVNGVKYDRSKDLKSLFKIVLFT 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184 P I RR +D+++ ID ++ D+++++ RN+LL T+ + + Sbjct: 118 PEDLAIIKDGPNLRRDLIDKIIEGIDLSYKSYKRDYDKILYQRNKLLKNTKSQYFKEQLA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + +++LG +I +R++ I + ++ +L L+ D + K Sbjct: 178 AFDKSLSKLGYRIYKSRLKFIKIIDQYARDFHSSLTSSKEELRLSYLAD-------ISPK 230 Query: 245 --EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EEY + R D + G HR D+ + K T S G+Q+ ++ I LA Sbjct: 231 DLEEYEEIFATSRDKDLKYLTSQRGIHRDDIEITINGKD-TKNFASQGQQRSAILNIRLA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +LI TG ++L D++ + LDE + ++F + G Q +T T+ Sbjct: 290 EVKLIKEVTGDEAVILFDDVFSELDE--KRSVFLLENLNGYQTIITATN 336 >gi|187932670|ref|YP_001884269.1| recombination protein F [Clostridium botulinum B str. Eklund 17B] gi|226737779|sp|B2THB7|RECF_CLOBB RecName: Full=DNA replication and repair protein recF gi|187720823|gb|ACD22044.1| DNA replication and repair protein RecF [Clostridium botulinum B str. Eklund 17B] Length = 361 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/371 (24%), Positives = 173/371 (46%), Gaps = 21/371 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + ++ +RNY +L L +F+GDN GKTN+LE+I + + + R + D+ Sbjct: 3 IKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDLIN 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + ++ S + ++ DI I RD + + +++N + I + EL + Sbjct: 63 WKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I RR+FLD + I ++ ++ + +++ RN +L F+ Sbjct: 118 SPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDILEV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSFCALK 244 + Q+ E I R+E I+ ++ Y K F H +++ +G D F S K Sbjct: 178 YDLQLVECADYIVKERLEYIDKIN-----YYGK--FIHNEIT-SGKEDIVFKYDSGIKFK 229 Query: 245 EEYAKKLFDGRKMDSMSRR----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +++ + K + + R T IGPHR D V + GS G+Q+ ++ + Sbjct: 230 DDFKYAFLEKLKNNLLRDREQGITSIGPHRDDFNV-LINNIDVKKFGSQGQQRTAVLTMK 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + ++I T PILLLD++ + LD +++ + + DI + I TG + + D L++ Sbjct: 289 FSSLKIIKEITKEYPILLLDDVLSELDINRKRYVLSTLNDIQTIITCTGIN-DLEDYLDD 347 Query: 361 TAKFMRISNHQ 371 +K ++ N + Sbjct: 348 KSKVFKVCNGE 358 >gi|42779085|ref|NP_976332.1| recombination protein F [Bacillus cereus ATCC 10987] gi|49477032|ref|YP_034364.1| recombination protein F [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118475782|ref|YP_892933.1| recombination protein F [Bacillus thuringiensis str. Al Hakam] gi|196041944|ref|ZP_03109231.1| DNA replication and repair protein RecF [Bacillus cereus NVH0597-99] gi|196045554|ref|ZP_03112785.1| DNA replication and repair protein RecF [Bacillus cereus 03BB108] gi|206975840|ref|ZP_03236751.1| DNA replication and repair protein RecF [Bacillus cereus H3081.97] gi|217957585|ref|YP_002336127.1| recombination protein F [Bacillus cereus AH187] gi|222093778|ref|YP_002527825.1| recombination protein f [Bacillus cereus Q1] gi|225862061|ref|YP_002747439.1| DNA replication and repair protein RecF [Bacillus cereus 03BB102] gi|228918104|ref|ZP_04081632.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930498|ref|ZP_04093498.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931510|ref|ZP_04094420.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228988721|ref|ZP_04148806.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229124995|ref|ZP_04254169.1| DNA replication and repair protein recF [Bacillus cereus 95/8201] gi|229142241|ref|ZP_04270765.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST26] gi|229187721|ref|ZP_04314857.1| DNA replication and repair protein recF [Bacillus cereus BGSC 6E1] gi|229199684|ref|ZP_04326327.1| DNA replication and repair protein recF [Bacillus cereus m1293] gi|301051745|ref|YP_003789956.1| recombination protein F [Bacillus anthracis CI] gi|51316288|sp|Q73FK2|RECF_BACC1 RecName: Full=DNA replication and repair protein recF gi|81697025|sp|Q6HQ00|RECF_BACHK RecName: Full=DNA replication and repair protein recF gi|166220700|sp|A0R883|RECF_BACAH RecName: Full=DNA replication and repair protein recF gi|226737771|sp|B7HPS0|RECF_BACC7 RecName: Full=DNA replication and repair protein recF gi|254790462|sp|C1ES11|RECF_BACC3 RecName: Full=DNA replication and repair protein recF gi|254790463|sp|B9IYH1|RECF_BACCQ RecName: Full=DNA replication and repair protein recF gi|42735000|gb|AAS38940.1| DNA replication and repair protein RecF [Bacillus cereus ATCC 10987] gi|49328588|gb|AAT59234.1| DNA replication and repair protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415007|gb|ABK83426.1| DNA replication and repair protein RecF [Bacillus thuringiensis str. Al Hakam] gi|196023761|gb|EDX62437.1| DNA replication and repair protein RecF [Bacillus cereus 03BB108] gi|196027199|gb|EDX65819.1| DNA replication and repair protein RecF [Bacillus cereus NVH0597-99] gi|206745934|gb|EDZ57330.1| DNA replication and repair protein RecF [Bacillus cereus H3081.97] gi|217067704|gb|ACJ81954.1| DNA replication and repair protein RecF [Bacillus cereus AH187] gi|221237823|gb|ACM10533.1| DNA replication and repair protein [Bacillus cereus Q1] gi|225790870|gb|ACO31087.1| DNA replication and repair protein RecF [Bacillus cereus 03BB102] gi|228583779|gb|EEK41954.1| DNA replication and repair protein recF [Bacillus cereus m1293] gi|228595789|gb|EEK53473.1| DNA replication and repair protein recF [Bacillus cereus BGSC 6E1] gi|228641259|gb|EEK97566.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST26] gi|228658496|gb|EEL14162.1| DNA replication and repair protein recF [Bacillus cereus 95/8201] gi|228771033|gb|EEM19514.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228828153|gb|EEM73877.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829217|gb|EEM74854.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841584|gb|EEM86700.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300373914|gb|ADK02818.1| recombination protein F [Bacillus cereus biovar anthracis str. CI] gi|324323998|gb|ADY19258.1| recombination protein F [Bacillus thuringiensis serovar finitimus YBT-020] Length = 375 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGTKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|30018282|ref|NP_829913.1| recombination protein F [Bacillus cereus ATCC 14579] gi|218232841|ref|YP_002364859.1| recombination protein F [Bacillus cereus B4264] gi|228955742|ref|ZP_04117737.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229051161|ref|ZP_04194705.1| DNA replication and repair protein recF [Bacillus cereus AH676] gi|229072957|ref|ZP_04206153.1| DNA replication and repair protein recF [Bacillus cereus F65185] gi|229112905|ref|ZP_04242436.1| DNA replication and repair protein recF [Bacillus cereus Rock1-15] gi|229130738|ref|ZP_04259691.1| DNA replication and repair protein recF [Bacillus cereus BDRD-Cer4] gi|229148042|ref|ZP_04276381.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST24] gi|229153651|ref|ZP_04281827.1| DNA replication and repair protein recF [Bacillus cereus m1550] gi|229181738|ref|ZP_04309061.1| DNA replication and repair protein recF [Bacillus cereus 172560W] gi|229193743|ref|ZP_04320684.1| DNA replication and repair protein recF [Bacillus cereus ATCC 10876] gi|51316395|sp|Q81JD2|RECF_BACCR RecName: Full=DNA replication and repair protein recF gi|226737770|sp|B7HIH7|RECF_BACC4 RecName: Full=DNA replication and repair protein recF gi|29893822|gb|AAP07114.1| DNA replication and repair protein recF [Bacillus cereus ATCC 14579] gi|218160798|gb|ACK60790.1| DNA replication and repair protein RecF [Bacillus cereus B4264] gi|228589768|gb|EEK47646.1| DNA replication and repair protein recF [Bacillus cereus ATCC 10876] gi|228601771|gb|EEK59269.1| DNA replication and repair protein recF [Bacillus cereus 172560W] gi|228629837|gb|EEK86490.1| DNA replication and repair protein recF [Bacillus cereus m1550] gi|228635467|gb|EEK91958.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST24] gi|228652755|gb|EEL08640.1| DNA replication and repair protein recF [Bacillus cereus BDRD-Cer4] gi|228670584|gb|EEL25897.1| DNA replication and repair protein recF [Bacillus cereus Rock1-15] gi|228710203|gb|EEL62181.1| DNA replication and repair protein recF [Bacillus cereus F65185] gi|228722224|gb|EEL73625.1| DNA replication and repair protein recF [Bacillus cereus AH676] gi|228803970|gb|EEM50594.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 375 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|297570616|ref|YP_003696390.1| DNA replication and repair protein RecF [Arcanobacterium haemolyticum DSM 20595] gi|296930963|gb|ADH91771.1| DNA replication and repair protein RecF [Arcanobacterium haemolyticum DSM 20595] Length = 410 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 104/388 (26%), Positives = 170/388 (43%), Gaps = 51/388 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +++FR+Y + + F T FVG+NG GKTN++EAI +L+ R + A + R Sbjct: 3 ISDLALNDFRSYRDVVVSFSPGITTFVGENGQGKTNLVEAIGYLATFSSHRVNADAALVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ + R + M G + ++LE R+ R +IN + D L +R Sbjct: 63 QGA---NAAVVRAKVMHGDSPTMVELEILSGRANRA-RINRGNAQPSDVLGI-VRTVVFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------GYF 178 P + G RRRFLD ++ + PR + D+E++ R R LL G Sbjct: 118 PEDLELIKGDPGVRRRFLDDVMVQLRPRMAQVKADYEKVARQRAALLKTIWKARRRGGPV 177 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK-------------------- 218 D + ++Q+A LG +I R +++AL + Y ++ Sbjct: 178 DETMLDIFDSQLAALGARIIGQRARIVSALRPYVEAYYREVSGGKGVARIDYAANIDARS 237 Query: 219 -ENFP---HIKLSLTGFLDGKFDQSFCALKEEYA------KKLFDGRKMDSMSRRTLIGP 268 +FP I +G L + Q L++E A L + R+ + L+GP Sbjct: 238 GWDFPAITDISADSSGALAAEIAQHERELQDESATAARLQATLREWREQEIERGVNLVGP 297 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN------TTGFAPILLLDEI 322 HR D + + + S GE + + LA R++ + T PIL+LD++ Sbjct: 298 HRDDFVT-FLGTLPAKGYASHGESWSYALSLRLASWRVLRDDDSGNWTDDGEPILILDDV 356 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGT 350 A LD +R L IV + GSQ+F+T Sbjct: 357 FAELDARRRQRLAAIVRE-GSQVFVTAA 383 >gi|302205160|gb|ADL09502.1| Recombination protein F [Corynebacterium pseudotuberculosis C231] gi|302329718|gb|ADL19912.1| Recombination protein F [Corynebacterium pseudotuberculosis 1002] gi|308275401|gb|ADO25300.1| Recombination protein F [Corynebacterium pseudotuberculosis I19] Length = 404 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 103/383 (26%), Positives = 169/383 (44%), Gaps = 38/383 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L++ +FR++A + + T+FVG NG GKTNI+EAI +++ R + + + Sbjct: 3 IRELSLRDFRSWADCHVNLEPGVTVFVGRNGFGKTNIVEAIGYIAHLGSHRVSQDSPLVH 62 Query: 67 IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S S A +G E A + IK + QIN ++ L +R Sbjct: 63 QGKDSARVSVTAVNQGRELTAHMLIK-----SKGTNQAQINRTRLKSPRGLLGVVRTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------G 176 P + G ERRR+LD +V PR D++++++ RN LL G Sbjct: 118 SPEDLSLVRGEPGERRRYLDHIVATRKPRLAGVKADYDKVLKQRNSLLKTASASLRRGYG 177 Query: 177 YFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP--------- 222 D + C+ +AQ+A LG ++ AR ++ L+ L+ + E+ P Sbjct: 178 ADDGTLCTLDVWDAQLARLGSELIHARHSLVEELTPLVHSAYARIAPESRPARINYESTV 237 Query: 223 HIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV---DYC 278 + +++T + L+ +L RK + TL+GPHR DL V DY Sbjct: 238 PVPVAVTDAEEASSSIPDLDVLEASMLSQLGVQRKKEIDRGLTLVGPHRDDLAVLLGDYP 297 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 K + S GE + + + LA L+S G PIL+LD++ A LD +R L I Sbjct: 298 AKG----YASHGETWSMALALRLAEFHLLS-ADGSEPILILDDVFAELDSKRRQKLVGIA 352 Query: 339 TDIGSQIFMTGTDKSVFDSLNET 361 + + + D+L E+ Sbjct: 353 MEAEQVLITAAVGDDLPDNLAES 375 >gi|296500842|ref|YP_003662542.1| recombination protein F [Bacillus thuringiensis BMB171] gi|296321894|gb|ADH04822.1| recombination protein F [Bacillus thuringiensis BMB171] Length = 375 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/376 (23%), Positives = 168/376 (44%), Gaps = 16/376 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240 Q+ E G KI R E ++ L + +++ +D Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLHLLQQWAAPIHRGISRGLEELEIVYKPSVDVSESMDL 237 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + + Sbjct: 238 SKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALSLK 296 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSL 358 LA LI + PILLLD++ + LD+ +++ L + Q F+T T D ++L Sbjct: 297 LAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIEHETL 355 Query: 359 NETAKFMRISNHQALC 374 E AK + ++N C Sbjct: 356 KE-AKTIHVTNGTVDC 370 >gi|256821231|ref|YP_003145194.1| DNA replication and repair protein RecF [Kangiella koreensis DSM 16069] gi|256794770|gb|ACV25426.1| DNA replication and repair protein RecF [Kangiella koreensis DSM 16069] Length = 369 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 154/346 (44%), Gaps = 17/346 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L+I FRN RL F Q I G+N GKT+ILE++ L GR FR + ++ + Sbjct: 1 MHIQSLSIQNFRNLQPSRLHFSPQLNIIYGNNAAGKTSILESLFILGHGRSFRTSRHSKL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F+ F+ + + ++ +D +VR +N + + +L + I Sbjct: 61 INYEQDS-FTLFSELYSHNVQQRLGVQRFRNNDVNVR---LNQEPLAKLSDLVSLIPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P + + RR+ LD VF ++ +R +R++ RN+LL +G Sbjct: 117 LAPEHYELLTKGPSGRRKLLDWGVFHVEHSFLKRWQACQRIILQRNKLL-KGSLSYKDLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++Q+ L ++N R + ++LS E + + P ++LSL + + L Sbjct: 176 AWDSQLIPLSDQVNQYRQDYCDSLSPYFHE-IASQFLPDVQLSLEFYKGWQGKDLESLLV 234 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+Y K G ++ + L L DY S G+QK+V + LA Sbjct: 235 EQYLKDKKLGYTQSTIQKADLKILSGKRLAADYL---------SRGQQKLVTTALKLAQL 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMT 348 RL P+ LLD+I A LDE+ + L + QIF+T Sbjct: 286 RLAQERGQQYPVFLLDDIGAELDENHQKLLLNFLAKQPEKQQIFIT 331 >gi|283768638|ref|ZP_06341550.1| putative recombination protein F [Bulleidia extructa W1219] gi|283105030|gb|EFC06402.1| putative recombination protein F [Bulleidia extructa W1219] Length = 359 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 162/355 (45%), Gaps = 32/355 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L +S +RNY L++ F + VG N GKTN++EA+ +LS R FR Sbjct: 3 IKSLELSHYRNYHHLQVSFQPYLNVIVGKNAQGKTNLIEALYYLSLCRSFRTNQDQ---- 58 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRC--------LQINDVVIRVVDELN 117 A ++ E A+++ ++E R S +RC L I + I E Sbjct: 59 ----------ALIQKEEKYANLACQIEERKQESYLRCILHGNGKSLFIGKINISKTSEFI 108 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 L + P +FS RR+F+D+ + + ++ + ++ L++ RN LL + Sbjct: 109 GRLNVVLFSPEDIYLFSQAPKARRKFMDQELMKLSKKYLFHLTRYQILLKERNMLLRKTK 168 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFP-HIKLSLTGFLDGK 235 D + ++ QM E V+I R+ + ++ I Q P ++K+ + ++ K Sbjct: 169 IDETMLDILDQQMVESEVEILKRRISFLQFINQKIESLFQSISGMPLNLKIEIKQGIEVK 228 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + K+E + RK D +R T +G HR D+ K I ++ S G++++V Sbjct: 229 KIE-----KKELVEAHLSSRKRDIETRITNVGIHRGDIQFLLDGKDILLS-ASQGQKRLV 282 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 ++ L R I + I+LLD++ + LD +++ L V + Q F+T T Sbjct: 283 MIAFKLTILRYIEFISKRKAIVLLDDVLSELDLERQKRLIHAVKN-DYQCFITAT 336 >gi|221135257|ref|ZP_03561560.1| Recombinational DNA repair ATPase [Glaciecola sp. HTCC2999] Length = 366 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 162/353 (45%), Gaps = 16/353 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + IS+FRN S + A + +G NG GK++ LE++ +L GR FR + V Sbjct: 1 MKLDKVQISQFRNIESATIYPSAHLNVVIGQNGSGKSSFLESLHYLGFGRSFRTNKHRHV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G S FS FA + + I L R+++ IN + + +L + + Sbjct: 61 IQSG-LSQFSVFAECSDINN-DNHKIGL-MRNNKDEFLCSINGKRSQRIADLVSQIPVQI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180 P + G RR+FLD +F ++ +++ ++++ RN LL T + Sbjct: 118 FTPQSTELLLGSPSNRRKFLDWGLFHVEQSFFNLSLNYSKILKQRNALLKYKQTGKPVSN 177 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 Q+A G I+ R + I+ L +I + + K+ P L ++ + +D S Sbjct: 178 DEMDYWSHQLAIYGENIDTYRQKYISEL-KMIFKRISKQFLPEFSLEIS--YNKGWDSSV 234 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + K L+D R T IG H++D+ + D + S G+ ++++ + Sbjct: 235 NFVSALREKLLYDTRM-----GYTSIGIHKADIKIK-ADNIVATERLSRGQLRMLVAALQ 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 L+ + +T + + LLD+I A LDEDKR + +Q+F+T +KS Sbjct: 289 LSQTLHLFESTNKSGVFLLDDIGAELDEDKRYHFIDALLATNTQLFVTAIEKS 341 >gi|38232645|ref|NP_938412.1| recombination protein F [Corynebacterium diphtheriae NCTC 13129] gi|51316242|sp|Q6NKL5|RECF_CORDI RecName: Full=DNA replication and repair protein recF gi|38198903|emb|CAE48514.1| DNA replication and repair protein [Corynebacterium diphtheriae] Length = 397 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 104/376 (27%), Positives = 169/376 (44%), Gaps = 30/376 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L++ +FR++ + + T+FVG NG GKTNI+EAI +++ R + + R Sbjct: 3 IRELSLRDFRSWPECTVTLEPGVTLFVGRNGFGKTNIVEAIGYVAHLGSHRVFHDSALVR 62 Query: 67 IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S S A G E A + IK + QIN ++ EL ++ Sbjct: 63 QGKESARVSVTAVNHGRELTAHLLIKA-----KGANQAQINRTRLKSPRELLGVVKTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY- 177 P + G ERRR+LD ++ PR D+++++R RN LL GY Sbjct: 118 SPEDLSLVRGDPAERRRYLDHVIATRKPRLGGVKADYDKVLRQRNSLLKTAGAALRRGYG 177 Query: 178 FDSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIK-LSLT 229 D S++ ++Q+A LG ++ AR ++ L L+ + + E+ P HI+ +S Sbjct: 178 ADDGALSTLDVWDSQLARLGGQLIHARHSVVRELGPLVHDAYARIAPESRPAHIRYVSTV 237 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV---DYCDKAITIAH 286 F D S + +L R + +L+GPHR DL V DY K Sbjct: 238 PFADVVELPSPEEFEAAMLAELGQCRDKEIDRGVSLVGPHRDDLDVVLGDYPAKGFA--- 294 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + + + LA L+ N G P+L+LD++ A LD +R L + + + Sbjct: 295 -SHGETWSMCLSLRLAEFHLLRN-DGTDPVLILDDVFAELDTQRREKLVSVTAEAEQVLI 352 Query: 347 MTGTDKSVFDSLNETA 362 + D+L E+A Sbjct: 353 TAAVGDDLPDTLTESA 368 >gi|206970379|ref|ZP_03231332.1| DNA replication and repair protein RecF [Bacillus cereus AH1134] gi|206734956|gb|EDZ52125.1| DNA replication and repair protein RecF [Bacillus cereus AH1134] Length = 375 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNNSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|89256653|ref|YP_514015.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica LVS] gi|115315066|ref|YP_763789.1| DNA replication and repair protein RecF [Francisella tularensis subsp. holarctica OSU18] gi|156502796|ref|YP_001428861.1| DNA replication and repair protein RecF [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010539|ref|ZP_02275470.1| DNA replication and repair protein RecF [Francisella tularensis subsp. holarctica FSC200] gi|254367965|ref|ZP_04983985.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica 257] gi|254369521|ref|ZP_04985532.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica FSC022] gi|290953408|ref|ZP_06558029.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica URFT1] gi|295313369|ref|ZP_06803978.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica URFT1] gi|122324928|sp|Q0BL82|RECF_FRATO RecName: Full=DNA replication and repair protein recF gi|122500520|sp|Q2A2N7|RECF_FRATH RecName: Full=DNA replication and repair protein recF gi|259563657|sp|A7ND52|RECF_FRATF RecName: Full=DNA replication and repair protein recF gi|89144484|emb|CAJ79791.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica LVS] gi|115129965|gb|ABI83152.1| DNA replication and repair protein RecF [Francisella tularensis subsp. holarctica OSU18] gi|134253775|gb|EBA52869.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica 257] gi|156253399|gb|ABU61905.1| DNA replication and repair protein RecF [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122475|gb|EDO66610.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica FSC022] Length = 349 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/356 (24%), Positives = 161/356 (45%), Gaps = 15/356 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN + F VG NG GKT+ILE+I FLS R FR + + + Sbjct: 6 LRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHNA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F + + + +I+I L +R S ++N + + E+ ++L I + P Sbjct: 66 DEFI-IYTKAYNPD---EITISL-SRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPES 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 I + + +R + +D F +D + + L++ RN L + Y S+ SI+ + Sbjct: 121 FNIINSGAQQRCKVIDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNY-PYSYILSIDKK 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + E ++ R L I E + N P+++L + F +S + EE Sbjct: 180 LCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKSLAQVLEE--- 235 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 D+ + T GPH++D+++ K I S G+QK+++ + LA + ++ Sbjct: 236 ----SFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQGEIHNS 290 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 I L+D+I++ LD LF + + SQ+F+T T+K+ + +T ++ Sbjct: 291 ENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSYI 346 >gi|304405886|ref|ZP_07387544.1| DNA replication and repair protein RecF [Paenibacillus curdlanolyticus YK9] gi|304345129|gb|EFM10965.1| DNA replication and repair protein RecF [Paenibacillus curdlanolyticus YK9] Length = 367 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 155/353 (43%), Gaps = 22/353 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + + +RNYA L L +++ +F+G N GKTN+LE+I L+ + R A D Sbjct: 3 LKRIALRNYRNYAELELDTNSKVNLFIGPNAQGKTNLLESIFALALTKSHRTAK--DKEL 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 IG + T A + G ++KL+ + +IN + R + + L + Sbjct: 61 IG---WNGTDAHIHGEADKQYGTVKLDLMLSAQGKKAKINGLEQRRLSDFVGSLNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS- 185 P I G RRRFLD + + P + + + +++ RN Y + W S Sbjct: 118 PEDLEIVKGTPGVRRRFLDMEIGQVQPGYLHTLQQYSKVLVQRNN-----YLKTLWSSGG 172 Query: 186 --------IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 AQ+A+ GVKI R I+ L + +L+++ +F+ Sbjct: 173 DKQGLLEVWNAQLADFGVKIIKKRKYFIHKLQQWAEQIHAGITAGSEQLTVSYKPSFEFE 232 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L E + KL ++ + TL+GPHR DL+ + + GS G+Q+ + Sbjct: 233 DE-SVLFEHFMLKLTQVKEQEIRRGTTLVGPHRDDLMF-FINGKEAQTFGSQGQQRTTAL 290 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + LA LI G P+LLLD++ + LD +++ L Q F+T T Sbjct: 291 SLKLAEIELIREEIGEYPLLLLDDVLSELDRNRQTQLIETFQS-KVQTFITAT 342 >gi|239942667|ref|ZP_04694604.1| recombination protein F [Streptomyces roseosporus NRRL 15998] gi|239989126|ref|ZP_04709790.1| recombination protein F [Streptomyces roseosporus NRRL 11379] gi|291446128|ref|ZP_06585518.1| recombination protein F [Streptomyces roseosporus NRRL 15998] gi|291349075|gb|EFE75979.1| recombination protein F [Streptomyces roseosporus NRRL 15998] Length = 376 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 159/358 (44%), Gaps = 22/358 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGITAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R +G ++LE R+ R +R D L +R Sbjct: 61 VRMGA---ERAVIRAAVTQGERSQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD +V A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFL 232 D S + + +G ++ R+++I L L + V P + L + Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGP-VALEYRSSV 235 Query: 233 --DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D + + L E+ L RK + TL+GPHR DL++ + S G Sbjct: 236 GEDVGPESTRDELYEQLMAALAGVRKQEIERGVTLVGPHRDDLLLGLRGMPAK-GYASHG 294 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 E + + LA L+ + G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 295 ESWSYALALRLASYELL-RSEGNEPVLVLDDVFAELDARRRERLAELVAP-GEQVLVT 350 >gi|289628212|ref|ZP_06461166.1| recombination protein F [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330870077|gb|EGH04786.1| recombination protein F [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987021|gb|EGH85124.1| recombination protein F [Pseudomonas syringae pv. lachrymans str. M301315] Length = 367 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185 R+ G RR+FLD VF ++PR M+ ++RL ++ RN L G D++ ++ Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ +I+ R I AL + E E L+L+ + +D+ ++ Sbjct: 179 WDRELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L D T GP R+DL + A I S G+QK+V+ + +A Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|330970327|gb|EGH70393.1| recombination protein F [Pseudomonas syringae pv. aceris str. M302273PT] Length = 367 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 93/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185 R+ G RR+FLD VF ++PR MI ++RL ++ RN L G D++ ++ Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MITWQRLQKALKQRNSWLRHGTLDAASQAA 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ +I+ R I AL + E E L+L+ + +D+ ++ Sbjct: 179 WDRELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L D T GP R+DL + A I S G+QK+V+ + +A Sbjct: 231 ELSTVLASSIHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|119355860|ref|YP_910504.1| DNA replication and repair protein RecF [Chlorobium phaeobacteroides DSM 266] gi|119353209|gb|ABL64080.1| DNA replication and repair protein RecF [Chlorobium phaeobacteroides DSM 266] Length = 365 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 93/355 (26%), Positives = 169/355 (47%), Gaps = 37/355 (10%) Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 + FRNY + +A T+ G NG GKTNILE I + + +GF + +D S + Sbjct: 9 NNFRNYRKMTFEPNAGITLLYGSNGSGKTNILEGIHYCALTKGFTSIADSDCI-FDSSDY 67 Query: 73 FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 ++ + G G +DI +++ ++ N+ + + + + I++ P + I Sbjct: 68 YALQSTCLGENG-SDIEVRISFSREKGKTLFVNNNEIKKFSNHVGTIPCITFSPPEIS-I 125 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 SG ERR+F+D ++ D ++ + ++ + R++ RN LL AQ++E Sbjct: 126 VSGSPSERRKFIDNIICQSDKKYLKDLLTYRRVLLQRNALL--------------AQISE 171 Query: 193 LGVKINIARV--EMINALSSLI----MEYVQK--ENFPHI--KLSLT---GFLD----GK 235 IN+ E ++ L++ I +E++ K +NF + KLS+ G + G+ Sbjct: 172 KKSSINMLPYWSENLSVLAASIVFKRLEFLDKFIDNFRDLFKKLSINEEPGIVYRSVLGR 231 Query: 236 FD--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 +D ++ L Y +K D + + + +T GPHR DL DK I + S G+ + Sbjct: 232 YDNIRNIDELAALYYRKYDDNLRYELLRSQTSCGPHRDDLEFYINDKEIK-KYASQGQLR 290 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 L+G+ LA + +TT PI LLD+I + LD + + I+ +G I + Sbjct: 291 TFLIGLKLAVYDYLFDTTHEKPICLLDDIFSELDTQRTENILSILQTLGQSIITS 345 >gi|30260199|ref|NP_842576.1| recombination protein F [Bacillus anthracis str. Ames] gi|47525258|ref|YP_016607.1| recombination protein F [Bacillus anthracis str. 'Ames Ancestor'] gi|49183043|ref|YP_026295.1| recombination protein F [Bacillus anthracis str. Sterne] gi|65317472|ref|ZP_00390431.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Bacillus anthracis str. A2012] gi|165873033|ref|ZP_02217654.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0488] gi|167635057|ref|ZP_02393374.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0442] gi|167641747|ref|ZP_02399990.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0193] gi|170689465|ref|ZP_02880655.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0465] gi|170707533|ref|ZP_02897986.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0389] gi|177655288|ref|ZP_02936842.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0174] gi|190569289|ref|ZP_03022183.1| DNA replication and repair protein RecF [Bacillus anthracis Tsiankovskii-I] gi|218901210|ref|YP_002449044.1| DNA replication and repair protein RecF [Bacillus cereus AH820] gi|227812682|ref|YP_002812691.1| DNA replication and repair protein RecF [Bacillus anthracis str. CDC 684] gi|228949214|ref|ZP_04111482.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229602868|ref|YP_002864661.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0248] gi|254687067|ref|ZP_05150925.1| recombination protein F [Bacillus anthracis str. CNEVA-9066] gi|254742124|ref|ZP_05199811.1| recombination protein F [Bacillus anthracis str. Kruger B] gi|254755966|ref|ZP_05207998.1| recombination protein F [Bacillus anthracis str. Vollum] gi|254761354|ref|ZP_05213376.1| recombination protein F [Bacillus anthracis str. Australia 94] gi|51316217|sp|Q6I535|RECF_BACAN RecName: Full=DNA replication and repair protein recF gi|226737768|sp|B7JJC0|RECF_BACC0 RecName: Full=DNA replication and repair protein recF gi|254790460|sp|C3P8P8|RECF_BACAA RecName: Full=DNA replication and repair protein recF gi|254790461|sp|C3LIC5|RECF_BACAC RecName: Full=DNA replication and repair protein recF gi|30253520|gb|AAP24062.1| DNA replication and repair protein RecF [Bacillus anthracis str. Ames] gi|47500406|gb|AAT29082.1| DNA replication and repair protein RecF [Bacillus anthracis str. 'Ames Ancestor'] gi|49176970|gb|AAT52346.1| DNA replication and repair protein RecF [Bacillus anthracis str. Sterne] gi|164711245|gb|EDR16801.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0488] gi|167510301|gb|EDR85704.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0193] gi|167529531|gb|EDR92281.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0442] gi|170127529|gb|EDS96403.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0389] gi|170666567|gb|EDT17340.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0465] gi|172080215|gb|EDT65307.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0174] gi|190559596|gb|EDV13587.1| DNA replication and repair protein RecF [Bacillus anthracis Tsiankovskii-I] gi|218536673|gb|ACK89071.1| DNA replication and repair protein RecF [Bacillus cereus AH820] gi|227005823|gb|ACP15566.1| DNA replication and repair protein RecF [Bacillus anthracis str. CDC 684] gi|228810497|gb|EEM56850.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229267276|gb|ACQ48913.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0248] Length = 375 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGTKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|52078495|ref|YP_077286.1| recombination protein F [Bacillus licheniformis ATCC 14580] gi|52783859|ref|YP_089688.1| recombination protein F [Bacillus licheniformis ATCC 14580] gi|81691262|sp|Q65PL9|RECF_BACLD RecName: Full=DNA replication and repair protein recF gi|52001706|gb|AAU21648.1| DNA repair RecF [Bacillus licheniformis ATCC 14580] gi|52346361|gb|AAU38995.1| RecF [Bacillus licheniformis ATCC 14580] Length = 370 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 88/389 (22%), Positives = 173/389 (44%), Gaps = 52/389 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L +S +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 IQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG + S+ ++ + + ++N + + + + + Sbjct: 63 -----WDEDYAKIEGRVIKKNGSVPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRFLD + + P + + +++++ RN L T D + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDQTM 177 Query: 183 CSSIEAQMAELGVKINIARVEMIN---------------ALSSLIMEYVQKENFPHIKLS 227 + Q+ E K+ + R++ ++ L L ++Y H L Sbjct: 178 LDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKY-------HTSLH 230 Query: 228 LTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 ++ D + ++F L+++ ++ +L GPHR D++ Y + Sbjct: 231 VSDSPDLSKMINSYQETFSKLRDKEIERGV-----------SLSGPHRDDVLF-YVNGRD 278 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 +GS G+Q+ + + LA LI G PILLLD++ + LD+ +++ L + Sbjct: 279 VQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-R 337 Query: 343 SQIFMTGTDKSVFD--SLNETAKFMRISN 369 Q F+T T D +LNE A+ R+ N Sbjct: 338 VQTFVTTTSVDGIDHKTLNE-AEIFRVEN 365 >gi|145221418|ref|YP_001132096.1| recombination protein F [Mycobacterium gilvum PYR-GCK] gi|189039630|sp|A4T4U1|RECF_MYCGI RecName: Full=DNA replication and repair protein recF gi|145213904|gb|ABP43308.1| DNA replication and repair protein RecF [Mycobacterium gilvum PYR-GCK] Length = 389 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 31/364 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +++FR+++ + L T+FVG NG GKTN++EA+ + + R AS A + R Sbjct: 3 VRHLALTDFRSWSRVELELSPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST EG E +++ L+ R+ + ++N +R E+ LR Sbjct: 63 AGAERAVVSTIIVNEGRE----LAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------E 175 P + G +RRR+LD + PR D+++++R R LL Sbjct: 118 APEDLALVRGDPGDRRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASSARFRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 G ++ + +A G ++ ARV++++ L+ + E + P + + + G Sbjct: 178 GALET--LDVWDGHLAAHGAQLIAARVDLVHELAPEV-EKAYQLLAPASRPATVRYRSGV 234 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAH 286 A ++F+ +D++SRR L+GPHR DL + D+ Sbjct: 235 EVVEAEAAAGNSDPEVFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQPAK-GF 293 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + + + LA L+ G P+LLLD++ A LD +R AL ++ Q+ Sbjct: 294 ASHGESWSMALSLRLAAYELL-RADGSDPVLLLDDVFAELDSARRQALAQVAAS-AEQVL 351 Query: 347 MTGT 350 +T Sbjct: 352 VTAA 355 >gi|226362898|ref|YP_002780678.1| recombination protein F [Rhodococcus opacus B4] gi|254790485|sp|C1B7T0|RECF_RHOOB RecName: Full=DNA replication and repair protein recF gi|226241385|dbj|BAH51733.1| DNA replication and repair protein RecF [Rhodococcus opacus B4] Length = 410 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 104/388 (26%), Positives = 174/388 (44%), Gaps = 44/388 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FR++ +L L T+FVG NG GKTN+LEA+ +LS R +S A + R Sbjct: 3 VRALSLRDFRSWDALGLNLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPLIR 62 Query: 67 IGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ F+ V G E +++ LE + +S R +IN R E+ L+ Sbjct: 63 TGTAQAFAGATVVNTGRE----LTVDLELNEGKSNRA-RINQSPTRRPREILGILQTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G +RRR+LD ++ + PR D+ER++R R+ LL Sbjct: 118 APEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYERVLRQRSALLKTAGGALRRSSR 177 Query: 176 --GYFDSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFP-- 222 G S++ + +A G ++ R+ +++ L+ + E Q E+ P Sbjct: 178 GGGRPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPAS 237 Query: 223 -HIKLSLTGFLDGKFDQSFCA--------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 + SL L +F A L+E + ++L R + L+GPHR DL Sbjct: 238 IRYRSSLGSSLPPEFTAPARAPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDDL 297 Query: 274 IVDYCDKAITIAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 + D T A G S GE + + LA L+ G P+L+LD++ A LD +R Sbjct: 298 ELHLGD---TPAKGFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRKRR 353 Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLN 359 AL ++ D + + V + L+ Sbjct: 354 RALAKVALDAEQVLITAAVPEDVPEELD 381 >gi|325954682|ref|YP_004238342.1| DNA replication and repair protein recF [Weeksella virosa DSM 16922] gi|323437300|gb|ADX67764.1| DNA replication and repair protein recF [Weeksella virosa DSM 16922] Length = 359 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 96/380 (25%), Positives = 167/380 (43%), Gaps = 42/380 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +F+N+ F + VG NG+GKTN+L+AI +L+ + + +++D Sbjct: 3 LRLLKARQFKNFTESDFEFSPKINAIVGPNGLGKTNLLDAIHYLALSKSY--LNHSDAMN 60 Query: 67 IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 I F + +EG D I R +S + + + R+ D + + + Sbjct: 61 I---QFDKDYFLLEGEFYRNHVDEKISCLVRKGQSKQLKRNSKQYDRLSDHIGQ-FPVVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180 + P + + S RR+FLD ++ D + + ++ + +++ RN LL FD+ Sbjct: 117 ISPYDSDLINEGSEVRRKFLDNIISQSDKAYLQHLLRYNKVLSQRNALLKYFAANQTFDA 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238 + ++ ELG KI R + + + Y E +K+ L+ + Sbjct: 177 DTLGIYDKELIELGEKIFAKRKTFVEIFAKVFKSYYSSISEQREPVKIEYISQLN---EH 233 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH------GSTGEQ 292 SF L + + K D ++ + G H+ DL A TI H GS G+Q Sbjct: 234 SFDTLLQNHLPK-------DRFAQHSTAGIHKDDL-------AFTIFHHPVKKFGSQGQQ 279 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMT--- 348 K L+ + LA +I PILLLD+I LDE + L R+V + QIF+T Sbjct: 280 KSYLIALKLAQLEVIKQVLNLTPILLLDDIFDKLDEQRVTQLIRLVNEARFGQIFVTDTH 339 Query: 349 -GTDKSVFDSLNETAKFMRI 367 G + + +NE +K +RI Sbjct: 340 PGRTEEIVKRINEESKIIRI 359 >gi|315441700|ref|YP_004074579.1| DNA replication and repair protein RecF [Mycobacterium sp. Spyr1] gi|315260003|gb|ADT96744.1| DNA replication and repair protein RecF [Mycobacterium sp. Spyr1] Length = 389 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 31/364 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +++FR+++ + L T+FVG NG GKTN++EA+ + + R AS A + R Sbjct: 3 VRHLALTDFRSWSRVELELSPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST EG E +++ L+ R+ + ++N +R E+ LR Sbjct: 63 AGAERAVVSTIIVNEGRE----LAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------E 175 P + G +RRR+LD + PR D+++++R R LL Sbjct: 118 APEDLALVRGDPGDRRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASSARFRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 G ++ + +A G ++ ARV++++ L+ + E + P + + + G Sbjct: 178 GALET--LDVWDGHLAAHGAQLIAARVDLVHELAPEV-EKAYQLLAPASRPATVRYRSGV 234 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAH 286 A ++F+ +D++SRR L+GPHR DL + D+ Sbjct: 235 EVVEAEAAAGNSDPEVFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQPAK-GF 293 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + + + LA L+ G P+LLLD++ A LD +R AL ++ Q+ Sbjct: 294 ASHGESWSMALSLRLAAYELL-RADGSDPVLLLDDVFAELDSARRQALAQVAAS-AEQVL 351 Query: 347 MTGT 350 +T Sbjct: 352 VTAA 355 >gi|330898606|gb|EGH30025.1| recombination protein F [Pseudomonas syringae pv. japonica str. M301072PT] Length = 367 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 16/345 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ ++ RN L G D++ ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ +I+ R I AL + E E L+L+ + +D+ ++E + Sbjct: 182 ELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L D T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 234 TVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|330447267|ref|ZP_08310917.1| ssDNA and dsDNA binding, ATP binding [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491458|dbj|GAA05414.1| ssDNA and dsDNA binding, ATP binding [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 360 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 94/363 (25%), Positives = 164/363 (45%), Gaps = 17/363 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN + L VG NG GKT++LEAI +L GR FR + V R Sbjct: 6 LMVHDFRNIEACDLALATGFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV + + I L + D + ++I + V +L + L + + P Sbjct: 66 SELF-IHGRVVDNQTQLMLPIGLNKKRDGTTE-VKIAGEPNQKVAQLAQILPLQLITPEG 123 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187 + G RR F+D VF ++P+ +RL + RN LL Y + S+ + Sbjct: 124 FDLLIGGPKYRRAFIDWGVFHVEPKFYHAWSRLKRLTKQRNALLKTARSYRELSYW---D 180 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 ++A L +I++ R + I+A+ E Q P ++ L G+ G ++ Y Sbjct: 181 QELALLAEQISVWRQDYISAVKEKAAEIFQV-FLPEYEIQL-GYYRGWEKET------PY 232 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 A+ L + D T GPH++DL + + S G+ K+++ + LA + Sbjct: 233 AELLKRNFERDCQLGYTASGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGLHL 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366 + TG I L+D+ ++ LD +R L + + + +Q+F++ +D V D L+E K Sbjct: 292 TEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISDDQVADMLDENGKLFH 351 Query: 367 ISN 369 + + Sbjct: 352 VEH 354 >gi|229015409|ref|ZP_04172415.1| DNA replication and repair protein recF [Bacillus cereus AH1273] gi|229026933|ref|ZP_04183256.1| DNA replication and repair protein recF [Bacillus cereus AH1272] gi|228734391|gb|EEL85062.1| DNA replication and repair protein recF [Bacillus cereus AH1272] gi|228745888|gb|EEL95884.1| DNA replication and repair protein recF [Bacillus cereus AH1273] Length = 375 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 169/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ITEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDYGQIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ LD Sbjct: 178 LDVFTLQLIEHGAKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSLDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + + N C Sbjct: 352 HETLKE-AKTIHVMNGTVDC 370 >gi|257789782|ref|YP_003180388.1| DNA replication and repair protein RecF [Eggerthella lenta DSM 2243] gi|317489245|ref|ZP_07947762.1| DNA replication and repair protein RecF [Eggerthella sp. 1_3_56FAA] gi|325832293|ref|ZP_08165292.1| DNA replication and repair protein RecF [Eggerthella sp. HGA1] gi|257473679|gb|ACV53999.1| DNA replication and repair protein RecF [Eggerthella lenta DSM 2243] gi|316911646|gb|EFV33238.1| DNA replication and repair protein RecF [Eggerthella sp. 1_3_56FAA] gi|325486129|gb|EGC88583.1| DNA replication and repair protein RecF [Eggerthella sp. HGA1] Length = 420 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 100/374 (26%), Positives = 169/374 (45%), Gaps = 51/374 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I FLN FR+Y + L T+ VG N GKTN++E I L+ FR A + R Sbjct: 8 ISFLN---FRSYEAFDLDGIGPLTVLVGPNAAGKTNVVEGIGLLTAQSSFRHAPVDQLVR 64 Query: 67 IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+P FAR+ +G + + ++ + + L N R D + Sbjct: 65 AGAP-----FARLTADVTDGSRQLELAVQMAEGKKKHLL--NGKPKRTAD-------LKG 110 Query: 125 LVPSMD------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 LVPS+ + G RR LD + + H D+E+++R +NRLL + Sbjct: 111 LVPSVTFTPDDLELAKGAMSVRRAALDALGSQLSANHYLIRRDYEKVLRHKNRLLKD-EA 169 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD----- 233 ++ ++ + G +++ R + L++ + Y + H +L GF+ Sbjct: 170 PAALVGAMNETLVTCGAQLSCYRAALFEKLAASMASYYAEITDGHERLD-AGFVPSWEEH 228 Query: 234 ----------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 G+ D++ AL + A++ + R + +R L+GPH +D I + D Sbjct: 229 DPLSFATRTFGR-DEAREALADALARRGGEER----VRKRALVGPH-ADRIEFFIDGKNA 282 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIG 342 GS G+Q+ V++ LA A LI + P+LLLD++ + LD +R AL ++ DI Sbjct: 283 ALFGSQGQQRSVVLAFKLAEATLIQDILRQKPVLLLDDVMSELDAARRRALVAFISGDI- 341 Query: 343 SQIFMTGTDKSVFD 356 Q F+T T+ + FD Sbjct: 342 -QTFITTTNLAYFD 354 >gi|127510938|ref|YP_001092135.1| DNA replication and repair protein RecF [Shewanella loihica PV-4] gi|166221864|sp|A3Q8S8|RECF_SHELP RecName: Full=DNA replication and repair protein recF gi|126636233|gb|ABO21876.1| DNA replication and repair protein RecF [Shewanella loihica PV-4] Length = 360 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 164/355 (46%), Gaps = 23/355 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I FRN AS +L + G NG GKT+ILEAI FL GR FR V + Sbjct: 6 LHIDSFRNIASAQLQLGDGLNLIYGQNGSGKTSILEAIFFLGMGRSFRSHLSQRVIQ-ND 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA++E E I ++ + V+ +N ++ + L + L I + P S Sbjct: 65 QDKLTLFAQLEQGEQETKIGLRRYRSGETEVK---MNGEKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCSSI 186 +F G RR+F+D F D + R+++ RN++L Y + Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHTDKSFYTAWANVRRILKHRNQMLKSETPYQQIQFWDKE 180 Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + AE+ +I V +N L +I E++ + + +K+S T D K D L+ Sbjct: 181 LVRYAEIVTEIRKRYVGSLNERLKGIIEEFLPQVD---VKVSFTRGWDSKTDYQ-TLLQA 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 +Y + L G T GPH++DL + + A S G+ K+++ + +A + Sbjct: 237 QYPRDLAAG--------HTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQGK 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN 359 L+ I L+D++ + LD R L + ++D G+Q+F+T + ++ DSLN Sbjct: 288 LLKQQIDKNSIYLVDDLPSELDARHRQLLLQQLSDTGAQVFVTAIEPAAIMDSLN 342 >gi|330937294|gb|EGH41305.1| recombination protein F [Pseudomonas syringae pv. pisi str. 1704B] gi|330976404|gb|EGH76461.1| recombination protein F [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 367 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 16/345 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ ++ RN L G D++ ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ +I+ R I AL + E E L+L+ + +D+ ++E + Sbjct: 182 ELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L D T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 234 TVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|77456231|ref|YP_345736.1| recombination protein F [Pseudomonas fluorescens Pf0-1] gi|97180883|sp|Q3KKF9|RECF_PSEPF RecName: Full=DNA replication and repair protein recF gi|77380234|gb|ABA71747.1| DNA replication and repair protein RecF [Pseudomonas fluorescens Pf0-1] Length = 367 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 155/348 (44%), Gaps = 16/348 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + + I G NG GKT++LEAI L R FR V + Sbjct: 6 VSVTAVRNLHPVTFSPSPRINILYGANGSGKTSVLEAIHLLGLARSFRSTRLLPVIQYEQ 65 Query: 70 PSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + + F +VE EG + + I +RD + ++I+ R +L + L + + P Sbjct: 66 LAC-TVFGQVELAEGGHSALGI---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ +R RN L G D+ + + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAVSQAVWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ + +I+ R I AL + E E L+L+ + D+ A+ Sbjct: 182 ELCQASAEIDEYRRAYIKALKP-VFEQTLSELVELEGLTLSYYRGWDKDRELSAV----- 235 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L + D T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 236 --LAGSVQRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 S I L+D++ + LDE R AL R++ D+ Q+F+T D + Sbjct: 292 SQARRGQCIYLVDDLPSELDESHRRALCRLLEDLRCQVFITCVDHELL 339 >gi|269837339|ref|YP_003319567.1| DNA replication and repair protein RecF [Sphaerobacter thermophilus DSM 20745] gi|269786602|gb|ACZ38745.1| DNA replication and repair protein RecF [Sphaerobacter thermophilus DSM 20745] Length = 412 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 96/378 (25%), Positives = 167/378 (44%), Gaps = 32/378 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS------YAD 63 L + EFR+Y L + A G N GKT++LEA+ L+ R R +S + Sbjct: 6 LQLEEFRSYRRLSVDLPAAGLRIFGQNAGGKTSLLEAVYLLATMRSPRASSERETIHWES 65 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS---VRCLQINDVVIRVVDELNKHL 120 +G P + AR+ D+ + L ++R + ++++ R +D + L Sbjct: 66 GVELGLPPYARVAARIRHNRHETDVEVVLTVDEERGGALRKRVKLDGRPRRAIDAVGA-L 124 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFD 179 ++ P + G RRR+LD + ID + + + + RL+ RN LL E G Sbjct: 125 KVVLFTPDDLNLILGSPSVRRRYLDITLSQIDSTYLQALGQYGRLLEQRNSLLKELGGRR 184 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY--VQKENFPHIK------------ 225 +IE QMA +I ++ + E V E F + Sbjct: 185 PRDERAIEDQMAYWDAEIVTRGAYLLAQRLRYVHEVDRVAAEEFRALARTEDRLGLRYST 244 Query: 226 -LSLTGFLDGKFDQSFCALKEEYAKKLFDGR----KMDSMSRR-TLIGPHRSDLIVDYCD 279 ++L L + +S A + + + + + D + R TL+GPHR DL Sbjct: 245 TVTLPDALRERVVESTLADAQAFVARALESDLHRLRPDELRRGVTLVGPHRDDLHFLLGG 304 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 ++ A+GS G+Q++ +V LA R + +TG P+LLLD++ + LD + + L ++ Sbjct: 305 HELS-AYGSRGQQRLAVVATKLAELRQVVASTGERPVLLLDDVLSELDPEHQERLLAVLG 363 Query: 340 DIGSQIFMTGTDKSVFDS 357 G QI +T TD+++ D Sbjct: 364 SAGCQILITATDRALLDQ 381 >gi|312958105|ref|ZP_07772628.1| DNA replication and repair protein recF [Pseudomonas fluorescens WH6] gi|311287536|gb|EFQ66094.1| DNA replication and repair protein recF [Pseudomonas fluorescens WH6] Length = 367 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 93/348 (26%), Positives = 157/348 (45%), Gaps = 16/348 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + + I G NG GKT++LEAI L R FR A V + Sbjct: 6 VSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPVIQYEQ 65 Query: 70 PSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + + F +VE EG +++ I +RD ++I+ R +L + L + + P Sbjct: 66 LAA-TVFGQVELAEGGHSNLGI---SRDRGGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ +R RN L G D++ ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ +I+ R I AL + E E L+L+ + D+ A+ Sbjct: 182 ELCLASDEIDEYRRAYIKALKP-VFEQTLSELLDLEGLTLSYYRGWDKDRELSAV----- 235 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L + D T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 236 --LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 S I L+D++ + LDE R AL R++ D+ Q+F+T D + Sbjct: 292 SQARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELL 339 >gi|229094603|ref|ZP_04225670.1| DNA replication and repair protein recF [Bacillus cereus Rock3-42] gi|229159053|ref|ZP_04287109.1| DNA replication and repair protein recF [Bacillus cereus ATCC 4342] gi|300118806|ref|ZP_07056526.1| recombination protein F [Bacillus cereus SJ1] gi|228624472|gb|EEK81243.1| DNA replication and repair protein recF [Bacillus cereus ATCC 4342] gi|228688850|gb|EEL42681.1| DNA replication and repair protein recF [Bacillus cereus Rock3-42] gi|298723774|gb|EFI64496.1| recombination protein F [Bacillus cereus SJ1] Length = 375 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TL+GPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|254735167|ref|ZP_05192877.1| recombination protein F [Bacillus anthracis str. Western North America USA6153] Length = 375 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGTKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KLQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|52145206|ref|YP_081623.1| recombination protein F [Bacillus cereus E33L] gi|81689896|sp|Q63HG4|RECF_BACCZ RecName: Full=DNA replication and repair protein recF gi|51978675|gb|AAU20225.1| DNA replication and repair protein [Bacillus cereus E33L] Length = 375 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TL+GPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|251777974|ref|ZP_04820894.1| DNA replication and repair protein RecF [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082289|gb|EES48179.1| DNA replication and repair protein RecF [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 361 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 87/367 (23%), Positives = 172/367 (46%), Gaps = 13/367 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + ++ +RNY +L L +F+GDN GKTN+LE+I + + + R + D+ Sbjct: 3 IKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDLIN 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + ++ S + ++ DI I RD + + +++N + I + EL + Sbjct: 63 WKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I RR+FLD + I ++ ++ + +++ RN +L F+ Sbjct: 118 SPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDILEV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALK 244 + Q+ E I R+E I+ ++ +++ E + + + G KF ++F K Sbjct: 178 YDLQLVECADYIVKERLEYIDKINYY-GKFIHNEITSGKEDIVFKYDSGVKFKENF---K 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + +KL + D T +GPHR D V + GS G+Q+ ++ + + Sbjct: 234 YVFLEKLRNNLLKDREQGITSVGPHRDDFNV-LINNIDVKKFGSQGQQRTAVLTMKFSSL 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 ++I T PILLLD++ + LD +++ + ++DI + I TG + + D L++ +K Sbjct: 293 KIIKEITKEYPILLLDDVLSELDINRKRYVLSTLSDIQTIITCTGIN-DLEDYLDDKSKV 351 Query: 365 MRISNHQ 371 + N + Sbjct: 352 FNVCNGE 358 >gi|323486746|ref|ZP_08092065.1| DNA replication and repair protein recF [Clostridium symbiosum WAL-14163] gi|323399885|gb|EGA92264.1| DNA replication and repair protein recF [Clostridium symbiosum WAL-14163] Length = 360 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 86/352 (24%), Positives = 156/352 (44%), Gaps = 24/352 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + +RNY L + FD + GDN GKTNILE++ + + R + ++ Sbjct: 3 IESLELKNYRNYKELHINFDPGTNVLYGDNAQGKTNILESVYVCATTKSHRGSKDREIIE 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S R + + D+ +K + + IN + I EL + + + Sbjct: 63 FGEEESHIKMNIRKDDVPYRIDMHLK-----KNKTKGVAINGIAIHKASELFGVVNVVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + ERRRF+D + ++ + ++ + +++ RN+LL E F + Sbjct: 118 SPEDLNLIKNGPAERRRFVDLELCQLNRLYVHSLVQYNKIILQRNKLLKEIAFRPEYEEM 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQS 239 + + Q+ G ++ R + I+ ++ +I + I +L+G L+ +++ + Sbjct: 178 LDIYDMQLVSYGRELIHYRNDFIDQMNGIIRD---------IHFNLSGGKEELEIRYEPN 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 A + K L R D + TL GPHR D I Y + GS G+Q+ + + Sbjct: 229 TEA--DVLEKALKKSRMQDLRQKTTLTGPHRDD-ISFYVNNIDIRKFGSQGQQRTAALSL 285 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LA L+ PILLLD++ + LD ++ L ++ I + I TG D Sbjct: 286 KLAEIELVKKIVKDYPILLLDDVLSELDSGRQEHLLSGISHIQTVITCTGLD 337 >gi|254724150|ref|ZP_05185935.1| recombination protein F [Bacillus anthracis str. A1055] Length = 375 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGTKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFLGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|257062757|ref|YP_003142429.1| recF protein [Slackia heliotrinireducens DSM 20476] gi|256790410|gb|ACV21080.1| recF protein [Slackia heliotrinireducens DSM 20476] Length = 376 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 99/373 (26%), Positives = 170/373 (45%), Gaps = 36/373 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 I+I+ + +FRNY + RL TIF+G NG+GKTN+LEAI L+ FR A ++ Sbjct: 3 IRIESFQLRDFRNYETFRLDGIGPLTIFIGPNGIGKTNVLEAIQLLTATPSFRHAHTQEL 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + + + + + D+ I L + + IN D + L Sbjct: 63 IRWDAEN---SLLKAHMVSDVRDLEIGLAI--GPTGKTYSINGKKHSGQD-VQTTLPSVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RR LD + + HR D+ +LM+ +N LL +G + Sbjct: 117 FSPDDMLLLKGSQSYRRDELDAVGCQLSKNHRILKRDYLKLMKHKNALLKDG-VTGPYIE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSS---------------LIMEYVQKENFPHIKLSLT 229 S+ + ++ + RV + +++ L M Y+ ++ +++S Sbjct: 176 SVNDLIVPTATQLYLYRVALFKNIAARMAEVYATISAGGERLEMRYI--PSWHPMEVSKD 233 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDG---RKMDSMSR-RTLIGPHRSDLIVDYCDKAITIA 285 D FD K+E + +L + R ++ R R L+GPH +D I+ Y + Sbjct: 234 VIEDVPFDLG----KQEISTRLEEALHQRAVEEYERGRGLVGPH-ADKIMFYLNGRNASL 288 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQ 344 +GS G+Q+ + + +A LI G P+LLLD++++ LD +R AL ++ DI Q Sbjct: 289 YGSQGQQRSISLAWKIAEVGLIEEILGQKPVLLLDDVASELDAARRGALVELLHRDI--Q 346 Query: 345 IFMTGTDKSVFDS 357 F+T TD F+S Sbjct: 347 TFITTTDIGTFES 359 >gi|320321690|gb|EFW77789.1| recombination protein F [Pseudomonas syringae pv. glycinea str. B076] gi|320331108|gb|EFW87079.1| recombination protein F [Pseudomonas syringae pv. glycinea str. race 4] Length = 367 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185 R+ G RR+FLD VF ++PR M+ ++RL ++ RN L G D++ ++ Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ +I+ R I AL + E E L+L+ + +D+ ++ Sbjct: 179 WDRELCYASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L D T GP R+DL + A I S G+QK+V+ + +A Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|330881906|gb|EGH16055.1| recombination protein F [Pseudomonas syringae pv. glycinea str. race 4] Length = 367 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPPPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185 R+ G RR+FLD VF ++PR M+ ++RL ++ RN L G D++ ++ Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ +I+ R I AL + E E L+L+ + +D+ ++ Sbjct: 179 WDRELCYASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L D T GP R+DL + A I S G+QK+V+ + +A Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|222528061|ref|YP_002571943.1| DNA replication and repair protein RecF [Caldicellulosiruptor bescii DSM 6725] gi|222454908|gb|ACM59170.1| DNA replication and repair protein RecF [Caldicellulosiruptor bescii DSM 6725] Length = 353 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 93/349 (26%), Positives = 156/349 (44%), Gaps = 23/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + + FR Y F + + VG+N GKT++LEA+ F G+ F+ D+ Sbjct: 1 MKIKSIYVENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCMCGKSFKS---RDI 57 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 I SF + ++E + + D + D+++ + + IND I+ + EL + Sbjct: 58 DAINFDSF---YFKLEMLAEVGDTEYNVFCYVDKALDKRIMINDKKIKKLSELISTFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RRRFLD V + P + ++ R + RN L + Y Sbjct: 115 FFEPDATELIKHQPKLRRRFLDMEVTKLYPYMTKVYSEYHRALLSRNAFL-KSYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++LG I R E+IN LS ++ + + L+ K+ S A Sbjct: 174 DVYDMQISQLGFLIFQKRQEVINKLS------IEAQKIFSLVFENKSMLELKYMPSIAAS 227 Query: 244 KE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E EY K++ + D T G HR D + DK I S G+ K+ V + LA Sbjct: 228 TEKEYYKEIKKNIEKDLSLGYTTKGVHRDDFEI-LIDKKPAINFASEGQIKLAAVSVVLA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + L S P+L+LD++ + LD KR L + ++ S F+T + Sbjct: 287 TSLLYSE-----PVLILDDVFSELDSFKRKNLVKFISQYQS--FVTSAE 328 >gi|254447440|ref|ZP_05060906.1| DNA replication, recombinaison and repair protein [gamma proteobacterium HTCC5015] gi|198262783|gb|EDY87062.1| DNA replication, recombinaison and repair protein [gamma proteobacterium HTCC5015] Length = 357 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 160/351 (45%), Gaps = 30/351 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I R A++ + + G N GKT++LEAI LS GR FR + + + Sbjct: 1 MSLQQLTIQNIRRLATVEMALSPSLNVIYGLNASGKTSLLEAIHLLSTGRSFRTSRFTEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A V +G I ++ R+ +++ ++ V EL + L Sbjct: 61 LSHEAKQAV-VAATVHQPDGACRIGVQRSARE----WLMKVGGERVQRVSELARWLPTQV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSW 182 + P + + RR+FL+ VF ++ R + ++R ++ RN L + D +W Sbjct: 116 IHPDSHFLLTAGPSYRRQFLNWGVFHVEHRFYPAWVRYQRALKQRNSALRQKDARMDGAW 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFD 237 +++++ I+ R E + L+ ++ +V Q+E +++ D + Sbjct: 176 ----DSELSRAASFIHELREEYVADLNRILPRFVAAMMGQQE----VQMVYQPGWDSE-- 225 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + A L D R+ D T GPHR+DL + A S G+QK+++ Sbjct: 226 -------QTLATVLRDYREKDRYRGHTQQGPHRADLSFK-VNGYKAQAEISRGQQKMLVS 277 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + LA A L +G + ++++D++ A LDE RNAL ++ D+ SQ+ +T Sbjct: 278 ALRLAQAALYQEQSGQSCLIMMDDLPAELDEKHRNALMGLLADMQSQVLVT 328 >gi|323694888|ref|ZP_08109038.1| DNA replication and repair protein recF [Clostridium symbiosum WAL-14673] gi|323500978|gb|EGB16890.1| DNA replication and repair protein recF [Clostridium symbiosum WAL-14673] Length = 360 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 86/352 (24%), Positives = 156/352 (44%), Gaps = 24/352 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + +RNY L + FD + GDN GKTNILE++ + + R + ++ Sbjct: 3 IESLELKNYRNYKELHINFDPGTNVLYGDNAQGKTNILESVYVCATTKSHRGSKDREIIE 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S R + + D+ +K + + IN + I EL + + + Sbjct: 63 FGEEESHIKMNIRKDDVPYRIDMHLK-----KNKTKGVAINGIAIHKASELFGVVNVVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + ERRRF+D + ++ + ++ + +++ RN+LL E F + Sbjct: 118 SPEDLNLIKNGPAERRRFVDLELCQLNRLYVHSLVQYNKIILQRNKLLKEIAFRPEYEEM 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQS 239 + + Q+ G ++ R + I+ ++ +I +I +L+G L+ +++ + Sbjct: 178 LDIYDMQLVSYGRELIHYRNDFIDQMNGIIR---------NIHFNLSGGKEELEIRYEPN 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 A + K L R D + TL GPHR D I Y + GS G+Q+ + + Sbjct: 229 TEA--DVLEKALKKSRMQDLRQKTTLTGPHRDD-ISFYVNNIDIRKFGSQGQQRTAALSL 285 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LA L+ PILLLD++ + LD ++ L ++ I + I TG D Sbjct: 286 KLAEIELVKKIVKDYPILLLDDVLSELDSGRQEHLLSGISHIQTVITCTGLD 337 >gi|315644303|ref|ZP_07897473.1| DNA replication and repair protein RecF [Paenibacillus vortex V453] gi|315280678|gb|EFU43967.1| DNA replication and repair protein RecF [Paenibacillus vortex V453] Length = 370 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 96/360 (26%), Positives = 157/360 (43%), Gaps = 18/360 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ +RNY L+L + +G N GKTN++EA+ L+ + R + D Sbjct: 3 VKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSK--DREL 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 IG F + A V ++KLE + + +IN + R + + L + Sbjct: 61 IG---FEQSHAHVSAEIDRKYGALKLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P I G RRRFLD + + P + + +++++ RN LL + G + + Sbjct: 118 PEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSAEQAM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLS-LTGFLDGKFDQS 239 +Q+AE GVKI R + I L Q + L L F D + ++ Sbjct: 178 LDIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAE-EED 236 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + KL ++ + TL GPHR DL Y + +GS G+Q+ + + Sbjct: 237 EAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAF-YINGKEVQTYGSQGQQRTTALSL 295 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA LI G P+LLLD++ + LD ++ L Q F+T T +SLN Sbjct: 296 KLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQS-KVQTFITATG---IESLN 351 >gi|126663370|ref|ZP_01734368.1| putative DNA replication and repair protein [Flavobacteria bacterium BAL38] gi|126625028|gb|EAZ95718.1| putative DNA replication and repair protein [Flavobacteria bacterium BAL38] Length = 359 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 97/353 (27%), Positives = 167/353 (47%), Gaps = 26/353 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N A + FDA+ FVG NGVGKTNIL+AI L+ G+ + R Sbjct: 3 LKQLSLLNYKNLAQIEFEFDAKINCFVGKNGVGKTNILDAIYHLAYGKSYFNPLAIQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G FF A +E I L+ ++++ ++ D+L++HL + LV Sbjct: 63 HGE-EFFVIDALLEKNNKEEKIVCSLKKGQKKTIKRNG------KIYDKLSEHLGLIPLV 115 Query: 127 ---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYF 178 PS D I G S RR+F+D ++ +D + + +I +++++ RN LL F Sbjct: 116 IISPSDSDLIVEG-SETRRKFIDSVIATLDNSYLQLLIQYQKIVAQRNALLKYFALNQTF 174 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D+ S Q++ G I R + ++ + ++ + + K++L K++ Sbjct: 175 DADNLSIYNEQLSHSGQLIFEKRKQFLSDFIPIFEKHHTNISGGNEKVAL------KYES 228 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 K+ L + + D + + T G H+ DLI + I GS G+QK L+ Sbjct: 229 QL--FKKNLLLLLEESLQKDRIIQYTSAGIHKDDLIFEIEGYPIK-KFGSQGQQKSFLIA 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT 350 + LA + +G PILL D+I LDE + + +V D + QIF++ T Sbjct: 286 LKLAQFEFMKKQSGELPILLFDDIFDKLDETRVQKIVTMVNDAVFGQIFISDT 338 >gi|160932421|ref|ZP_02079811.1| hypothetical protein CLOLEP_01256 [Clostridium leptum DSM 753] gi|156868380|gb|EDO61752.1| hypothetical protein CLOLEP_01256 [Clostridium leptum DSM 753] Length = 368 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 100/370 (27%), Positives = 169/370 (45%), Gaps = 21/370 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L ++RN L+ Q + GDN GKTN+LEA+ + GR FR A ++ Sbjct: 1 MKVNRLGFRDYRNLKENELIPGPQVNVICGDNAQGKTNLLEAVWLFTGGRSFRGARDQEL 60 Query: 65 TRIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL-NKHLR 121 S + + E E A I+I + R Q+N V L K Sbjct: 61 IAFSSRAGAVLALDFEAEEREQTAKITIGRGAKK----RAAQLNGVDQPAASSLIGKFCA 116 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + + + + G SM RR+FLD + P + R + + R + RN LL + + S Sbjct: 117 VVFSPDHLSLVKEGPSM-RRKFLDAALCQRKPAYARLLSQYSRTLAQRNTLLKDISYHSE 175 Query: 182 WCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFL-DG 234 ++E +++ LG I I R + LS E + + ++ +G L DG Sbjct: 176 LLETLEIWDEKLSGLGAAIIIERKRYLERLSEAAGEIYDGISQGRERFAVRYDSGLLRDG 235 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + +E L +GRK D + T GPHR DL+V +K+ +GS G+Q+ Sbjct: 236 GEEAGY---RERLFSLLQNGRKEDLNAGFTTKGPHRDDLLVTVQEKSAR-EYGSQGQQRS 291 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 ++ + LA A L++ G P++LLD++ + LD +++ L + G Q+F+T D + Sbjct: 292 CVLALKLAEAALLAEALGEKPVILLDDVMSELDASRQDYLLNKIQ--GWQVFITCCDPNS 349 Query: 355 FDSLNETAKF 364 L++ F Sbjct: 350 ISGLSQGRTF 359 >gi|333030065|ref|ZP_08458126.1| DNA replication and repair protein recF [Bacteroides coprosuis DSM 18011] gi|332740662|gb|EGJ71144.1| DNA replication and repair protein recF [Bacteroides coprosuis DSM 18011] Length = 372 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 102/359 (28%), Positives = 161/359 (44%), Gaps = 34/359 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +++ ++N + L F + F+G+NG+GKTNIL+ I +LS + + + Sbjct: 3 ITHISVLNYKNLEEVELEFSPKLNCFLGENGMGKTNILDTIYYLSFCKSSINPIDSQNIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS--- 123 G F ++G D S+ E + V C + ++ R+S Sbjct: 63 HGEDFFV--------IQGFYD-SLSGEIEE---VYCGLKRRKKKQFKRNKKEYTRLSDHI 110 Query: 124 WLVP----SMD--RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEG 176 LVP S D R+ G S ERR+F+D ++ D + +I + + M+ RN LL +E Sbjct: 111 GLVPLVMVSPDDARLIDGGSDERRKFMDMVISQYDKDYLSALIQYNKAMQQRNSLLKSEN 170 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 D S +E MAE G+ + R + I L EY + +SL+ D K Sbjct: 171 PIDPQLFSVLEELMAESGIVVYKKRAQFIEEFIPLFQEYYSSISQDKESVSLSYDSDLKE 230 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + LKE A+ L G +L G H+ DLI+ D +I GS G+ K L Sbjct: 231 NDLLTLLKESRARDLIMG--------YSLKGIHKDDLIMSLGDFSIK-KEGSQGQNKTYL 281 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTGTDKS 353 V + LA + P+LLLD+I LD + + +V + G QIF+T T++S Sbjct: 282 VALKLAQFSFLRKINNKTPLLLLDDIFDKLDALRVEQIMHLVAGEEFG-QIFITDTNRS 339 >gi|317126745|ref|YP_004093027.1| DNA replication and repair protein RecF [Bacillus cellulosilyticus DSM 2522] gi|315471693|gb|ADU28296.1| DNA replication and repair protein RecF [Bacillus cellulosilyticus DSM 2522] Length = 373 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 32/360 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + I ++RNY L L F+ + + +G+N GKTN++E+I L+ + R ++ R Sbjct: 3 IKQITIRDYRNYDHLTLPFNNKINVIIGENAQGKTNLMESIYVLAMAKSHRTTKDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P FA+VEG + +++E + ++IN + + + E I Sbjct: 63 WDQP-----FAKVEGQINNKNGPLQMEVIFSTKGKKVKINHLEKKRLSEYIGSCNIVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GYFDSS 181 P + G RRRFLD + I P + + + + ++ RN+ L + D++ Sbjct: 118 PEDLSLVKGSPQIRRRFLDMEMGQIHPVYLYYLSQYHKQLKQRNQWLKDVLQKKQKPDAT 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLTGF 231 + Q+ + R + I L +E ++ P I +S Sbjct: 178 MLDVMTDQLIISAGHVIEKRYDFIKKLQKWAAPIHHDISRGLESLEINYVPSINVS---- 233 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTG 290 D LKEE FD K + + R TLIGPHR DL + I GS G Sbjct: 234 EDMDLSTLLTVLKEE-----FDRLKDNELRRGITLIGPHRDDLQFLVNGRDIQ-TFGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + + LA LI G PILLLD++ + LD+ +++ L + Q F+T T Sbjct: 288 QQRTTALSVKLAELELIHEKVGEYPILLLDDVLSELDDHRQSHLLNTIQG-KVQTFVTTT 346 >gi|220933196|ref|YP_002512095.1| DNA replication and repair protein RecF [Thioalkalivibrio sp. HL-EbGR7] gi|254790497|sp|B8GSS3|RECF_THISH RecName: Full=DNA replication and repair protein recF gi|219994506|gb|ACL71108.1| DNA replication and repair protein RecF [Thioalkalivibrio sp. HL-EbGR7] Length = 360 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 88/330 (26%), Positives = 149/330 (45%), Gaps = 37/330 (11%) Query: 34 GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF------FSTFARVEGMEGLAD 87 G NG GKT++LEAI LS G FR TR SP AR++ G Sbjct: 30 GVNGAGKTSLLEAIHLLSTGHSFR-------TRQLSPLLAPDCDAVEVVARIQSTGGGEP 82 Query: 88 ISIKL-ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146 + + +TRD + R I +R + +L + L + + P + SG RR FLD Sbjct: 83 WPVGIRKTRDSTTAR---IRGENVRSLADLARLLPLQVMHPESHLLVSGGPGYRRAFLDW 139 Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWCSSIEAQMAELGVKINIARVE 203 F DP + + L+ RN L + S+W + + E G +++AR Sbjct: 140 GCFHTDPAYHDHWRRYRHLLCQRNAALRDRSPARLLSAW----DTALGEAGSALDLARAT 195 Query: 204 MINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + L + Y+ K+ P T L ++ + + +E ++ L + D + Sbjct: 196 HLQTL----LPYLDSLKQELPE-----TSGLALEYRRGWNP-EESLSESLAHSVQRDRSA 245 Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321 T +GPHR++L+ + + S G+QK V++ + +A + + T GF P++L+D+ Sbjct: 246 GFTQVGPHRAELLCRLDGRPVAQV-ASRGQQKSVVLMLKMAQSLWLMETLGFPPVVLVDD 304 Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + A LD R L + +GSQ+F+T + Sbjct: 305 LPAELDARHRGWLMNCLQGLGSQVFVTAIE 334 >gi|66043274|ref|YP_233115.1| recombination protein F [Pseudomonas syringae pv. syringae B728a] gi|81308684|sp|Q500U5|RECF_PSEU2 RecName: Full=DNA replication and repair protein recF gi|63253981|gb|AAY35077.1| RecF protein [Pseudomonas syringae pv. syringae B728a] Length = 367 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 16/345 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ ++ RN L G D++ ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ +I+ R I AL + E E L+L+ + +D+ ++E + Sbjct: 182 ELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L D T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 234 TVLASSIHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|117618875|ref|YP_854530.1| DNA replication and repair protein RecF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560282|gb|ABK37230.1| DNA replication and repair protein RecF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 367 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 98/352 (27%), Positives = 156/352 (44%), Gaps = 34/352 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S+FRN L I VG NG GKT++LEAI +L GR FR V R G Sbjct: 6 LQLSDFRNIQQASLALSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRVIRQGE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + F+ FA+ E +EG + I L +D L+I + + EL + L + + P Sbjct: 66 RA-FTLFAQCE-LEG-RQVPIGL-AKDKSGETQLKIAGAQAQRLAELAELLPVQLIHPDG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYFDSSW 182 + +G RR +LD VF +P RL++ RN LL + Y+D Sbjct: 122 FNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQSSQYRQLAYWDQ-- 179 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ LG ++ R A++ LI E + + P +SL + + D A Sbjct: 180 ------ELVRLGGELAEFRASYCQAITPLIKE-MTADFLPEFDISLGFYRGWEKDTPLNA 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG---STGEQKVVLVGI 299 L E G + D T +GP ++D+ + KA + S G+ K+++ + Sbjct: 233 LLEA-------GFERDRALGYTGVGPQKADVRL----KANGVPAQDILSRGQLKLLVCAM 281 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LA ++ + I L+D+ ++ LD DKR L + SQ+F+T D Sbjct: 282 RLAQGLYLNQHSSRGCIFLIDDFASELDVDKRRLLAARLKQCASQVFITAID 333 >gi|228942641|ref|ZP_04105173.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975571|ref|ZP_04136123.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982207|ref|ZP_04142496.1| DNA replication and repair protein recF [Bacillus thuringiensis Bt407] gi|228777559|gb|EEM25837.1| DNA replication and repair protein recF [Bacillus thuringiensis Bt407] gi|228784181|gb|EEM32208.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817067|gb|EEM63160.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937801|gb|AEA13697.1| recombination protein F [Bacillus thuringiensis serovar chinensis CT-43] Length = 375 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 92/381 (24%), Positives = 170/381 (44%), Gaps = 26/381 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEEFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T SV Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVDG 349 Query: 357 SLNET---AKFMRISNHQALC 374 +ET AK + ++N C Sbjct: 350 IEHETLKDAKTIHVTNGTVDC 370 >gi|257485597|ref|ZP_05639638.1| recombination protein F [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011885|gb|EGH91941.1| recombination protein F [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 367 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 P+ + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PAC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185 R+ G RR+FLD VF ++PR M+ ++RL ++ RN L G D++ ++ Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ +I+ R I AL + E E L+L+ + +D+ ++ Sbjct: 179 WDRELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L D T GP R+DL + A I S G+QK+V+ + +A Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|188590699|ref|YP_001919469.1| recombination protein F [Clostridium botulinum E3 str. Alaska E43] gi|226737778|sp|B2UX46|RECF_CLOBA RecName: Full=DNA replication and repair protein recF gi|188500980|gb|ACD54116.1| DNA replication and repair protein RecF [Clostridium botulinum E3 str. Alaska E43] Length = 361 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 87/367 (23%), Positives = 171/367 (46%), Gaps = 13/367 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + ++ +RNY +L L +F+GDN GKTN+LE+I + + + R + D+ Sbjct: 3 IKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDLIN 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + ++ S + ++ DI I RD + + +++N + I + EL + Sbjct: 63 WKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVVMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P +I RR+FLD + I ++ ++ + +++ RN +L F+ Sbjct: 118 SPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDILEV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALK 244 + Q+ E I R+E I+ + + +++ E + + + G KF +F K Sbjct: 178 YDLQLVECADYIVKERLEYIDKI-NYYGKFIHNEITSGKEDIVFKYDSGIKFKDNF---K 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + +KL + D T +GPHR D V + GS G+Q+ ++ + + Sbjct: 234 YAFLEKLRNNLLRDREQGITSVGPHRDDFNV-LINNIDVKKFGSQGQQRTAVLTMKFSSL 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 ++I T PILLLD++ + LD +++ + ++DI + I TG + + D L++ +K Sbjct: 293 KIIKEITKEYPILLLDDVLSELDINRKRYVLSTLSDIQTIITCTGIN-DLEDYLDDKSKV 351 Query: 365 MRISNHQ 371 + N + Sbjct: 352 FNVCNGE 358 >gi|149182287|ref|ZP_01860766.1| recombination protein F [Bacillus sp. SG-1] gi|148849979|gb|EDL64150.1| recombination protein F [Bacillus sp. SG-1] Length = 372 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 88/376 (23%), Positives = 169/376 (44%), Gaps = 23/376 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY S+ + F+ + +G+N GKTNI+E+I L+ + R ++ D+ R Sbjct: 3 IEEIQLKNYRNYDSVDISFENNVNVILGENAQGKTNIMESIYVLAMAKSHRTSNDKDLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A+++G + S+ LE + + + N + + + + ++ + Sbjct: 63 -----WDEEYAKIKGRIKKHNGSLPLELVISKKGKKAKSNHIEQKKLSQYVGNMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRF+D + + P + + ++++++ RN L T D + Sbjct: 118 PEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDIALYQKILQQRNHYLKMLQTRKQKDETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 + Q+ E+ KI R E I L+ E+ + + + +D Sbjct: 178 LDVLTEQLTEVSAKIIRKRFEFI----ELLQEWARPIHSGISRGLETLDIQYKPSIDVCD 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 DQ + + + A+K R+ + TL GPHR DL D+ + GS G+Q+ Sbjct: 234 DQDWSKMIDIIAEKFHTIRQREIDRGVTLAGPHRDDLQFFVNDRDVQ-TFGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIHSEIKEYPILLLDDVLSELDDFRQSHLLNTIQG-KVQTFVTTTSVDGID 351 Query: 357 --SLNETAKFMRISNH 370 +LN+ F + H Sbjct: 352 HQTLNDATTFEVETGH 367 >gi|75761790|ref|ZP_00741725.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895145|ref|YP_002443556.1| DNA replication and repair protein RecF [Bacillus cereus G9842] gi|228905436|ref|ZP_04069391.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL 4222] gi|228968645|ref|ZP_04129628.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar sotto str. T04001] gi|226737769|sp|B7IS23|RECF_BACC2 RecName: Full=DNA replication and repair protein recF gi|74490723|gb|EAO54004.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218546019|gb|ACK98413.1| DNA replication and repair protein RecF [Bacillus cereus G9842] gi|228791074|gb|EEM38692.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar sotto str. T04001] gi|228854256|gb|EEM98959.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL 4222] Length = 375 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 92/381 (24%), Positives = 170/381 (44%), Gaps = 26/381 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEEFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T SV Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVDG 349 Query: 357 SLNET---AKFMRISNHQALC 374 +ET AK + ++N C Sbjct: 350 IEHETLKDAKTIHVTNGTVDC 370 >gi|319440152|ref|ZP_07989308.1| recombination protein F [Corynebacterium variabile DSM 44702] Length = 391 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 102/383 (26%), Positives = 168/383 (43%), Gaps = 28/383 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FR++ASL L T+F G NG GKTNI+EA+ +L+ R + A + R Sbjct: 3 LRSLHLGDFRSWASLDLELTPGVTVFAGPNGNGKTNIVEAVGYLAHLSSHRVSGDAALVR 62 Query: 67 IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S S A G E A + I R +N +R L +R + Sbjct: 63 EGCDSARVSATAVNHGRELTAHLVINA-----RGSNKAAVNRTSLRNQRGLAGIVRTTMF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + G +RR FLD++V A PR D+++++R RN LL + + Sbjct: 118 APEDLALVRGEPEQRRHFLDQVVAARYPRLAGVRADYDKVLRQRNALLKSASSPVAVADT 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQS 239 + +AQ+A LG +I ARV++++ L+ + E + + P + +S T +D + Sbjct: 178 LDVWDAQLAHLGGEIMSARVQVVHDLAPHVEESYARLAPGSRPAL-ISYTSTVDAELADV 236 Query: 240 FCALKEEY-----------AKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHG 287 Y +L R + TL GPHR DL ++ A A Sbjct: 237 GVDPGGTYLVDPDVAEAVLLSRLAQRRNAEVERGITLTGPHRDDLQLILGTQPAKGFA-- 294 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + LA R+ G P+++LD++ A LD +R AL + + + Sbjct: 295 SHGESWSFALTLRLASHRM-QRADGTEPLVILDDVFAELDRARRRALVDLAGEAEQVLIT 353 Query: 348 TGTDKSVFDSLNETAKFMRISNH 370 D+ + L E A+ + H Sbjct: 354 AAVDEDIPADLREIAQVHAVRAH 376 >gi|71736050|ref|YP_272318.1| recombination protein F [Pseudomonas syringae pv. phaseolicola 1448A] gi|97180865|sp|Q48QJ8|RECF_PSE14 RecName: Full=DNA replication and repair protein recF gi|71556603|gb|AAZ35814.1| DNA replication and repair protein RecF [Pseudomonas syringae pv. phaseolicola 1448A] Length = 367 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYVQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185 R+ G RR+FLD VF ++PR M+ ++RL ++ RN L G D++ ++ Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ +I+ R I AL + E E L+L+ + +D+ ++ Sbjct: 179 WDRELCYASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L D T GP R+DL + A I S G+QK+V+ + +A Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|241668638|ref|ZP_04756216.1| DNA replication and repair protein RecF [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877171|ref|ZP_05249881.1| DNA replication and repair protein recF [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843192|gb|EET21606.1| DNA replication and repair protein recF [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 349 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 158/359 (44%), Gaps = 16/359 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN F VG NG GKT+ILE+I FLS R FR + + S Sbjct: 6 LRLQNFRNIPIKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHDS 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F E + +S R S ++N + + E+ + L I + P Sbjct: 66 DEFIVYTKAYNPDEVVISLS-----RKKNSNNISKLNSEIQKNHTEITRVLPIQLMNPES 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 I + + +R + LD F +D + + L++ RN L + Y ++ + I+ + Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNY-PKAYINGIDKK 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + E ++ R L I E + + N P +KL + F +S + EE Sbjct: 180 LCEFADILDYKRQAYFIKLKPKIYEVLSQFN-PDLKLDIDYFRGWNSHKSLVQVLEES-- 236 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 FD D+ T GPH++D+++ K I S G+QK+++ I LA + ++ Sbjct: 237 --FDS---DNRYNVTSHGPHKADIVLTINHKPIQDIF-SRGQQKLLICAIKLAQGEIHNS 290 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAKFMRI 367 I L+D+I++ LD LF + ++ SQ+F+T T+K+ + D LN + + I Sbjct: 291 ENENKCIYLIDDITSELDNTHTKTLFSYLKNLKSQVFITTTEKNKIIDFLNLDSHIIEI 349 >gi|149370654|ref|ZP_01890343.1| DNA replication and repair protein RecF, ABC family ATPase [unidentified eubacterium SCB49] gi|149356205|gb|EDM44762.1| DNA replication and repair protein RecF, ABC family ATPase [unidentified eubacterium SCB49] Length = 359 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 102/376 (27%), Positives = 172/376 (45%), Gaps = 40/376 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ ++N+ FD F G NGVGKTN L+AI LS G+ + + R G Sbjct: 6 LSLLNYKNFEVQTFEFDPNINCFTGHNGVGKTNALDAIYHLSFGKSYFNPITSQNIRHGE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR----VVDELNKHLRISWL 125 F VEG IK + + V + VI+ D + H+ L Sbjct: 66 EFFV-----VEGQ------YIKTDRPEKIVVSAKKGQKKVIKRNGKAYDRFSDHIGFLPL 114 Query: 126 V---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 V P+ D I G S RR+F+D ++ D + + ++ + +++ RN LL + + Sbjct: 115 VIISPADRDLIIEG-SDTRRKFIDGVISQGDSLYLKDILSYGKILVQRNSLLKYFAANHT 173 Query: 182 W----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 W + + Q++ELG +I+ +R E + + + +E + + + T LD K Sbjct: 174 WNKDNLAIYDLQLSELGERIHKSRKEFLKEFTPIFLEKYKAIS----SGTETVGLDYK-- 227 Query: 238 QSFCALKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 L E+ + L D MS+ T +G H+ DLI + I GS G+QK L Sbjct: 228 ---SQLNEDRMEHLLQQNVHKDKMSQYTSVGTHKDDLIFTIDEHPIK-KFGSQGQQKSFL 283 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD---- 351 + + LA I N PILLLD+I LDE++ + ++V D Q+F++ T Sbjct: 284 IALKLAQFEFIKNVHKVHPILLLDDIFDKLDEERVAHIIKLVDDENFGQLFISDTHADRT 343 Query: 352 KSVFDSLNETAKFMRI 367 ++V ++++ KF ++ Sbjct: 344 EAVVKKVSQSYKFFKL 359 >gi|325846385|ref|ZP_08169354.1| putative DNA replication and repair protein RecF [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481569|gb|EGC84609.1| putative DNA replication and repair protein RecF [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 357 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 165/367 (44%), Gaps = 35/367 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L +S+FRNY S + F+ IF+GDN GKTN+LE+I +L+ + F+ D+ Sbjct: 3 IQSLRLSKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDLIM 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + E ++ I++ + + + + +ND+ +L ++ Sbjct: 63 FNEKE-MALDGLIRKNESFKNVKIRV----NENKKEIFVNDIKYDKNKDLKSLFKLVLFT 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183 P I RR +D ++ +++ ++ DF++++ RN++L YF Sbjct: 118 PEDLTIIKDGPNFRRNLIDDIIISVNFSYKALKKDFDKVLSQRNKVLKNQRSKYFKEELM 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + Q+ L KI R + I SLI Y +K + + + K D S Sbjct: 178 -AFDQQIIRLNYKIYRYREKYI----SLINTYAKKNH--------SNLTENKEDLSIIYR 224 Query: 244 K-------EEYAKKLFDGRKMDSMSRRTLIGPHRS--DLIVDYCDKAITIAHGSTGEQKV 294 EEY +K + D RT G R D+I++ D + GS G+Q+ Sbjct: 225 PDIVAKDIEEYREKFSKNKSYDLKYYRTTSGSQRDEIDIIINGKD---SKKFGSQGQQRS 281 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 ++ I LA+ LI NT+ I+L D++ + LDE + N L + G Q +T T+ Sbjct: 282 AILNIKLANVNLIENTSQDKAIILFDDVFSELDEKRSNFLLENLG--GFQTIITATNTKS 339 Query: 355 FDSLNET 361 D ++++ Sbjct: 340 LDRVDKS 346 >gi|52424542|ref|YP_087679.1| recombination protein F [Mannheimia succiniciproducens MBEL55E] gi|81691468|sp|Q65VB6|RECF_MANSM RecName: Full=DNA replication and repair protein recF gi|52306594|gb|AAU37094.1| RecF protein [Mannheimia succiniciproducens MBEL55E] Length = 360 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 85/346 (24%), Positives = 160/346 (46%), Gaps = 15/346 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN +++ L FD VG+NG GKT++LEA+ +L GR F+ + V Sbjct: 1 MAIARLIVENFRNISAVDLEFDHGFNFLVGNNGSGKTSLLEALFYLGHGRSFKSSVTTRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F+ R+ ++ + ++ + +D ++ ++IN + +L L + Sbjct: 61 IRYDQPH-FTLHGRIRELQHEWSVGLQKQRKDGNTI--VKINGEDGNKISDLAHLLPMQI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F P RL++ RN L + Y D + Sbjct: 118 ITPEGLTLLNGGPSYRRAFLDWGLFHHQPNFHSAWSALHRLLKQRNAALNQTY-DYNMLK 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R + ALS I E + P + + ++ F Q + Sbjct: 177 PWDMELAKLAHQVSQWRADYAEALSPEI-EQTCRLFLPELDIHVS------FHQGW-EKD 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +YA+ L + + D T+ GP ++D + + + S G+ K+++ + LA Sbjct: 229 TDYAQLLTENFERDKAIGYTVSGPQKADF--RFKSNGLPVEDVLSRGQLKLLMCALRLAQ 286 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + I L+D+ ++ LDE KR L + + + SQ+F+T Sbjct: 287 GEHLMAQKNRHCIFLIDDFASELDETKRALLAQRLQNSNSQVFVTA 332 >gi|302543961|ref|ZP_07296303.1| RecF protein [Streptomyces hygroscopicus ATCC 53653] gi|302461579|gb|EFL24672.1| RecF protein [Streptomyces himastatinicus ATCC 53653] Length = 383 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 98/369 (26%), Positives = 162/369 (43%), Gaps = 33/369 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARAEVALGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A V+G ++LE ++ R +R D L LR Sbjct: 61 VRMGAERAVVRAAVVQGDR---QQLVELELNPGKANRARINRSSQVRPRDALGI-LRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDDLITARAPRMAGIRSDYDRVLKQRNSLLKTAAMARRHGS 176 Query: 179 --------DSSWCS--SIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIK 225 D++ + + +A G ++ R ++I+ L L E + P + Sbjct: 177 RSGSGGSGDAALATLDVWDQHLARTGAELLAQRFDLISVLQPLADKAYEQLAPGGGP-VL 235 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLF----DGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L G D + +EE ++L D RK + TL+GPHR DL++ + Sbjct: 236 LEYRG--SAGEDLAAAGSREELYERLMAALADARKQEIERGVTLVGPHRDDLVLK-LGRL 292 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + LA L+ G P+L+LD++ A LD +R L +V Sbjct: 293 PAKGYASHGESWSYALALRLASYDLL-RAEGAEPVLVLDDVFAELDSRRRERLAELVAP- 350 Query: 342 GSQIFMTGT 350 G Q+ +T Sbjct: 351 GEQVLVTAA 359 >gi|325961454|ref|YP_004239360.1| DNA replication and repair protein RecF [Arthrobacter phenanthrenivorans Sphe3] gi|323467541|gb|ADX71226.1| DNA replication and repair protein RecF [Arthrobacter phenanthrenivorans Sphe3] Length = 403 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 101/390 (25%), Positives = 173/390 (44%), Gaps = 42/390 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++++FR+YA + L T+ VG NG+GKTN++EAI +L+ R +S A + R Sbjct: 3 LEHLSLTDFRSYAQVDLALGPGVTVLVGYNGIGKTNLMEAIGYLATMSSHRVSSDAPLLR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ R + G ++LE R+ R +R D L + Sbjct: 63 FGTD---RALVRARLVRGGQITILELEINAGRANRGRINRSNPVRARDLLGI-CQTVLFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183 P + G RRRFLD ++ ++ P H D++R+++ RN LL G F S+ Sbjct: 119 PEDLALVKGDPSNRRRFLDELLASLVPHHAATRSDYDRVLKQRNALLKSARAGKFTSAHE 178 Query: 184 SSIEA---QMAELGVKINIARVEMINAL-SSLIMEYVQ--KENFPH---IKLSLTGFLDG 234 ++++ MA G ++ AR+E++ L L Y Q E+ P + +L +D Sbjct: 179 ATLDVWDQHMARAGAELLHARLELVERLRPHLARAYAQLTDESKPADAVYRSTLQNQMDD 238 Query: 235 KFDQ--------------------SFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 SF L E Y + + R+ + +L+GPHR + Sbjct: 239 DGAALVGAGGTAAGGASAGAEDLLSFGVEQLTERYVQAFAESRRKELERGISLVGPHRDE 298 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDED 329 L + +A + S GE + + + LA ++ + T G APIL+LD++ A LD Sbjct: 299 LEL-VLGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELDVQ 357 Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 +R L IV+ + D + + L+ Sbjct: 358 RRRKLAAIVSGAEQVLVTAAVDADIPEELS 387 >gi|124009358|ref|ZP_01694036.1| DNA replication and repair protein RecF [Microscilla marina ATCC 23134] gi|123985020|gb|EAY24971.1| DNA replication and repair protein RecF [Microscilla marina ATCC 23134] Length = 372 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 97/353 (27%), Positives = 162/353 (45%), Gaps = 36/353 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVTRIG 68 +N+ F+NY L L F + VGDNG GKTN+L+AI +LS +G F + V + Sbjct: 6 INLLNFKNYEMLDLDFSSSVNCIVGDNGSGKTNLLDAIHYLSMSKGAFGGGNTQHV--LH 63 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHL---RISW 124 FF V+G+ D+ ++ + + ++N + D+++ H+ + Sbjct: 64 KEDFFM----VKGVFQAKDLDYEVTCGYKKGQAKVFKVNQ---KQYDKISDHIGRFPVVL 116 Query: 125 LVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFD 179 + P+ D I G + RR+F D ++ +D + +I + ++ RN LL + + D Sbjct: 117 IAPNDTDTITEGSEL-RRKFFDSIISQLDKNYLINLIQYTHHLKQRNSLLKQFAERNFVD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFD 237 S + ++ LG + R E I + + E+ Q+ EN +L + Sbjct: 176 RSLIDTYNHKLIALGKAVCDKRQEFITEFAPIFREHYQELTENKEITELV--------YQ 227 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVL 296 F L+E YA D +RT G H+ D D+ D + GS G+QK + Sbjct: 228 SQF--LEEHYADDFRQALPDDLRLQRTTRGIHKDD--YDFLIDDHLLRKFGSQGQQKSYV 283 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMT 348 + + LAH +I N T PILLLD+I LD+ + + L R + QIF+T Sbjct: 284 IALKLAHFDIIKNYTFMKPILLLDDIFDKLDDKRMDKLMRKVAAHAFGQIFIT 336 >gi|167036435|ref|YP_001664013.1| recombination protein F [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114861|ref|YP_004185020.1| DNA replication and repair protein RecF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226737846|sp|B0KAG3|RECF_THEP3 RecName: Full=DNA replication and repair protein recF gi|166855269|gb|ABY93677.1| DNA replication and repair protein RecF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927952|gb|ADV78637.1| DNA replication and repair protein RecF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 362 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 21/354 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRN ++ F IF G N GK+N+LE+I LS GR FR + ++ + Sbjct: 3 VKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTELIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F + + + D I+ + + + + +++N I+ EL L Sbjct: 63 FGEDYF---YVKAIICQENNDKKIEFGYKKNEN-KVIKVNGNKIKSTSELLGQLLTVIFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183 P I RR++LD + ++ + ++ + +++ RN+LL EG S Sbjct: 119 PEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGK-SKSIL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G KI + R + + I ++ + E + L+ G D ++ Sbjct: 178 EIFDDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE-- 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298 +K+ +KL +D T +GPHR D +I++ D + + S G+Q+ + Sbjct: 236 -IVKKRLKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTAALC 291 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ ++ T P+LLLD++ + LDE+++ + + G Q F+T T K Sbjct: 292 LKLSEFEILKKETSEKPVLLLDDVMSELDENRKKYVLERLK--GFQTFITHTTK 343 >gi|223043401|ref|ZP_03613447.1| DNA replication and repair protein RecF [Staphylococcus capitis SK14] gi|222443190|gb|EEE49289.1| DNA replication and repair protein RecF [Staphylococcus capitis SK14] Length = 371 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 93/384 (24%), Positives = 170/384 (44%), Gaps = 29/384 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + ++RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLEKYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FKADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSKLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q A+ +K+ + R I L L E + + P +KLS Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLGLKYLPSLKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +++ L EE + L D + + L GPHR DL + + +GS G Sbjct: 233 ----DYEKEESELLEEVIELLNDNLQREKERGVCLYGPHRDDLGFN-VNGMDAQTYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346 Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373 D + AK RIS + L Sbjct: 347 SVDGIDHEIMNNAKLYRISQGELL 370 >gi|323463205|gb|ADX75358.1| DNA replication and repair protein RecF [Staphylococcus pseudintermedius ED99] Length = 371 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 95/387 (24%), Positives = 171/387 (44%), Gaps = 43/387 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY + L + I +G+N GKTN+LE+I L+ + R + ++ Sbjct: 1 MKLKTLQLENYRNYEQISLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTTNDREL 60 Query: 65 TRIGSPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R F + +A++EG G+ +++ + T+ + V+ +N + + + HL Sbjct: 61 IR-----FNAEYAKIEGELNFRHGMMPLTMFI-TKKGKKVK---VNHLEQSRLTQYIGHL 111 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-- 178 + P I G RRRF+D + I + + ++R+++ RN L + Sbjct: 112 NVVLFAPEDLSIVKGAPQVRRRFIDMELGQISRLYLNDLSQYQRILKQRNHYLKQLQLKK 171 Query: 179 --DSSWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKL 226 D++ + Q E VK+ R + I L L E + + P IK+ Sbjct: 172 TQDTTMLEVLNHQFVEYAVKVTQRRQQFIKELELLAAPIHSGITNERETLTLQYLPSIKI 231 Query: 227 S-LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI--VDYCDKAIT 283 ++ D Q ++ +++ G +L GPHR DL V+ D Sbjct: 232 EDVSQSEDVLIQQVLEDVQHHMEREIERG--------VSLYGPHRDDLAFQVNGMDAQ-- 281 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 +GS G+Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Sbjct: 282 -TYGSQGQQRTTALSIKLAEIELMNQEVGEYPILLLDDVLSELDDARQTHLLSTIQH-KV 339 Query: 344 QIFMTGTDKSVFD-SLNETAKFMRISN 369 Q F+T T D + + AK RI+ Sbjct: 340 QTFVTTTSVDGIDHEIMKDAKVYRITQ 366 >gi|315273169|ref|ZP_07869215.1| DNA replication and repair protein RecF [Listeria marthii FSL S4-120] gi|313616205|gb|EFR89284.1| DNA replication and repair protein RecF [Listeria marthii FSL S4-120] Length = 370 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 92/371 (24%), Positives = 162/371 (43%), Gaps = 48/371 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG S+ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPMLLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249 A++ + + R + I L + + + + LK EY A Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228 Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 VTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFDSLNETAK 363 S D +ET K Sbjct: 347 SGID--HETLK 355 >gi|22299987|ref|NP_683234.1| recombination protein F [Thermosynechococcus elongatus BP-1] gi|51316460|sp|Q8DG79|RECF_THEEB RecName: Full=DNA replication and repair protein recF gi|22296172|dbj|BAC09996.1| DNA repair and genetic recombination protein [Thermosynechococcus elongatus BP-1] Length = 379 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 186/378 (49%), Gaps = 33/378 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ FRNY+ + F A TI VGDN GK+N+LEA+ +L+ + R D+ + Sbjct: 3 LKSLHLRHFRNYSEQSVTFAAPKTILVGDNAQGKSNLLEAVEWLATLQSHRTHRDRDLIQ 62 Query: 67 IGSPSFFSTFARVEGM---EGLA-DISIKLETRDDRSVRCLQINDVVI-RVVDELNKHLR 121 G S A++E +G+ D+++ L S R L++N + R D L + Sbjct: 63 QGHES-----AQIEATLERQGVPLDLAVSLRP---SSGRVLRVNGCTVKRTADFLGQLNA 114 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGY 177 + + ++ + G RR +LDR++ ++P + + + +++ +R RN LL ++G+ Sbjct: 115 VEFSCLDLE-LVRGTPAIRRNWLDRILLQLEPLYSQLLQTYQKALRQRNALLKQAGSQGW 173 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENFPHIKLSLTGFL 232 ++ W + Q+ G +I R +I L+ L ++ + +E S Sbjct: 174 DEALW-QAWNQQLVINGTRIIRRRQRLIERLAPLAQDWHRVLSGDRETLTLSYESHVPLG 232 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGE 291 DG + A E A + R ++ + + +L+GPHR D V +C A + S G+ Sbjct: 233 DGTSEAIVAAFSEALATR----RAIEFLQKTSLVGPHRDD--VGFCLNAQSARQFASQGQ 286 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 Q+ +++ + LA L+ + G P+LLLD++ A LD ++ L ++ D Q MT T Sbjct: 287 QRTLVLALKLAELALVESVVGDTPLLLLDDVLAELDLQRQGILLEVMGD-RYQTLMTTTH 345 Query: 352 KSVFDS-LNETAKFMRIS 368 + F + + A+ ++++ Sbjct: 346 LAPFAAPWRQQAQILKVT 363 >gi|89101116|ref|ZP_01173952.1| recombination protein F [Bacillus sp. NRRL B-14911] gi|89084171|gb|EAR63336.1| recombination protein F [Bacillus sp. NRRL B-14911] Length = 372 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 88/371 (23%), Positives = 165/371 (44%), Gaps = 25/371 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + +RNY SL + F+ + + +G N GKTN++E+I L+ + R ++ ++ R Sbjct: 3 IEQLLLRNYRNYESLEVQFEDKVNVIIGQNAQGKTNVMESIYVLAMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEG--MEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + +A++EG + + ++L ++ + +C N + + + + ++ + Sbjct: 63 -----WDEDYAKIEGRVRKNHGPLPMQLVISKKGKKAKC---NHIEQQRLSQYVGNMNVV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFD 179 P + G RRRF+D + + P + + + ++++ RN L T D Sbjct: 115 MFAPEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDVGQYNKILQQRNHYLKLLQTRKQTD 174 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFD 237 + + Q E+ +I R E + L M + +K+ D Sbjct: 175 QAMLEILTEQFIEMAARIVAKRFEFLKLLQKWAMPIHEGISRGLETLKIEYKPSADVSDG 234 Query: 238 QSFCALKEEYAKKL--FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 Q + + Y +K GR++D T+ GPHR DL Y + GS G+Q+ Sbjct: 235 QELSKMIKVYQEKFEKVRGREIDRGV--TMFGPHRDDLAF-YVNGRDVQTFGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + + LA LI + G PILLLD++ + LD+ +++ L + Q F+T T Sbjct: 292 ALSLKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGI 350 Query: 356 D--SLNETAKF 364 D +L E A F Sbjct: 351 DHQTLKEAAAF 361 >gi|330961507|gb|EGH61767.1| recombination protein F [Pseudomonas syringae pv. maculicola str. ES4326] Length = 367 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 161/345 (46%), Gaps = 16/345 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 P+ + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PAC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPMQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ ++ RN L G D++ ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ +I+ R I AL + E E L+L+ + +D+ ++E + Sbjct: 182 ELCLASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L D T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 234 TVLASSLNRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 S I L+D++ + LDE R AL R++ ++ Q+F+T D+ Sbjct: 292 SQVRRGQCIYLVDDLPSELDEHHRQALCRLLEELRCQVFITCVDQ 336 >gi|28867246|ref|NP_789865.1| DNA replication and repair protein RecF [Pseudomonas syringae pv. tomato str. DC3000] gi|213968439|ref|ZP_03396582.1| DNA replication and repair protein RecF [Pseudomonas syringae pv. tomato T1] gi|301384273|ref|ZP_07232691.1| recombination protein F [Pseudomonas syringae pv. tomato Max13] gi|302063877|ref|ZP_07255418.1| recombination protein F [Pseudomonas syringae pv. tomato K40] gi|302131960|ref|ZP_07257950.1| recombination protein F [Pseudomonas syringae pv. tomato NCPPB 1108] gi|38258486|sp|Q88BK1|RECF_PSESM RecName: Full=DNA replication and repair protein recF gi|28850480|gb|AAO53560.1| DNA replication and repair protein RecF [Pseudomonas syringae pv. tomato str. DC3000] gi|213926727|gb|EEB60279.1| DNA replication and repair protein RecF [Pseudomonas syringae pv. tomato T1] gi|330876357|gb|EGH10506.1| recombination protein F [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964179|gb|EGH64439.1| recombination protein F [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017723|gb|EGH97779.1| recombination protein F [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 367 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 16/345 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ ++ RN L G D++ ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ +I+ R I AL + E E L+L+ + +D+ ++E + Sbjct: 182 ELCLASDEIDEFRRAYIKALKP-VFEKTLSELVELEGLTLSYYRG--WDK-----EKELS 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L D T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 234 TVLASSLNRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|254830703|ref|ZP_05235358.1| recombination protein F [Listeria monocytogenes 10403S] gi|290892042|ref|ZP_06555039.1| recombination protein F [Listeria monocytogenes FSL J2-071] gi|290558636|gb|EFD92153.1| recombination protein F [Listeria monocytogenes FSL J2-071] Length = 370 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 93/371 (25%), Positives = 162/371 (43%), Gaps = 48/371 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG S+ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249 A++ + + R + I L + + + + LK EY A Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228 Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 VTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + I LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFDSLNETAK 363 S D +ET K Sbjct: 347 SGID--HETLK 355 >gi|167038679|ref|YP_001661664.1| recombination protein F [Thermoanaerobacter sp. X514] gi|256751452|ref|ZP_05492330.1| DNA replication and repair protein RecF [Thermoanaerobacter ethanolicus CCSD1] gi|300913761|ref|ZP_07131078.1| DNA replication and repair protein RecF [Thermoanaerobacter sp. X561] gi|307723222|ref|YP_003902973.1| DNA replication and repair protein RecF [Thermoanaerobacter sp. X513] gi|226737847|sp|B0K0X1|RECF_THEPX RecName: Full=DNA replication and repair protein recF gi|166852919|gb|ABY91328.1| DNA replication and repair protein RecF [Thermoanaerobacter sp. X514] gi|256749671|gb|EEU62697.1| DNA replication and repair protein RecF [Thermoanaerobacter ethanolicus CCSD1] gi|300890446|gb|EFK85591.1| DNA replication and repair protein RecF [Thermoanaerobacter sp. X561] gi|307580283|gb|ADN53682.1| DNA replication and repair protein RecF [Thermoanaerobacter sp. X513] Length = 362 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 21/354 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRN ++ F IF G N GK+N+LE+I LS GR FR + ++ + Sbjct: 3 VKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTELIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F + + + D I+ + + + + +++N I+ EL L Sbjct: 63 FGEDYF---YVKAIICQENNDKKIEFGYKKNEN-KVIKVNGNKIKSTSELLGQLLTVIFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183 P I RR++LD + ++ + ++ + +++ RN+LL EG S Sbjct: 119 PEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGK-SKSIL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G KI + R + + I ++ + E + L+ G D ++ Sbjct: 178 EIFDDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE-- 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298 +K+ +KL +D T +GPHR D +I++ D + + S G+Q+ + Sbjct: 236 -IVKKRLKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTAALC 291 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ ++ T P+LLLD++ + LDE+++ + + G Q F+T T K Sbjct: 292 LKLSEFEILKKETSEKPVLLLDDVMSELDENRKKYVLERLK--GFQTFITHTTK 343 >gi|229099919|ref|ZP_04230842.1| DNA replication and repair protein recF [Bacillus cereus Rock3-29] gi|229118982|ref|ZP_04248327.1| DNA replication and repair protein recF [Bacillus cereus Rock1-3] gi|228664507|gb|EEL20003.1| DNA replication and repair protein recF [Bacillus cereus Rock1-3] gi|228683534|gb|EEL37489.1| DNA replication and repair protein recF [Bacillus cereus Rock3-29] Length = 375 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 91/381 (23%), Positives = 170/381 (44%), Gaps = 26/381 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R + ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILQKRFDFLH----LLQEWAAPIHRGISRGLEELEIIYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T SV Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVDG 349 Query: 357 SLNET---AKFMRISNHQALC 374 +ET AK + ++N C Sbjct: 350 IEHETLKDAKTIHVTNGTVDC 370 >gi|313625797|gb|EFR95414.1| DNA replication and repair protein RecF [Listeria innocua FSL J1-023] Length = 370 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 91/374 (24%), Positives = 163/374 (43%), Gaps = 48/374 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG ++ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPMLLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249 A++ + + R + I L + + + + LK EY A Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228 Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 VTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFD--SLNETAKF 364 S D +LN+ F Sbjct: 347 SGIDHNTLNQATTF 360 >gi|224498302|ref|ZP_03666651.1| recombination protein F [Listeria monocytogenes Finland 1988] Length = 370 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 92/371 (24%), Positives = 162/371 (43%), Gaps = 48/371 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG S+ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRIAKHGQSVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 A++ + + R + I L + + + + LK EY Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228 Query: 251 L-FDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + +G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 ITLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + I LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFDSLNETAK 363 S D +ET K Sbjct: 347 SGID--HETLK 355 >gi|323143412|ref|ZP_08078097.1| putative DNA replication and repair protein RecF [Succinatimonas hippei YIT 12066] gi|322416817|gb|EFY07466.1| putative DNA replication and repair protein RecF [Succinatimonas hippei YIT 12066] Length = 359 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 96/354 (27%), Positives = 172/354 (48%), Gaps = 30/354 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L IS+FRN L + G NG GK+++LEA+S+L+ GR FR +Y + + G Sbjct: 6 LVISDFRNLEMLDFKPAPGFNVIYGPNGSGKSSVLEAVSYLALGRSFRGYNYQYLIKNGR 65 Query: 70 PSFFSTFARV-EGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 S FS FA V E L D I I +D ++ IN ++ + +L + + + P Sbjct: 66 KS-FSVFASVNENHAALTDNIGIAKGRGEDLQIK---INGSKVQRLIDLVDKICVQIIHP 121 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SSWCS 184 + + RR F+D V+ +P+ + +++R+++ RN LL D S W Sbjct: 122 QGIELVTQGPELRRNFIDWGVYYSEPKFKDLWFNYKRVIKQRNILLKSKASDFEISVW-- 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-PHIKLSLTGFLDGKFDQSFCAL 243 + ++ L KI+ R + L+ + Q E F P K SL L +++ F L Sbjct: 180 --DDLLSSLSEKIDEFRCSYLEKLNVFLS--AQCEQFLP--KFSLKFELHSGWNKDF-KL 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST---GEQKVVLVGIF 300 ++ A+ L + D + T G HR+DL + K+ +++ G+T G+ K+++ + Sbjct: 233 RDLLAQNL----EKDRVLGYTFYGCHRADLKI----KSDSVSAGATLSRGQLKLLVCAMR 284 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 LA L+ + TG + I L+D++++ LD + + L + Q+F+T + + Sbjct: 285 LAQGLLLKHETGRSCIYLIDDLNSELDSNSQKILLENLKQCSCQVFITNISREM 338 >gi|307543592|ref|YP_003896071.1| recombination protein F [Halomonas elongata DSM 2581] gi|307215616|emb|CBV40886.1| recombination protein F [Halomonas elongata DSM 2581] Length = 371 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 91/349 (26%), Positives = 147/349 (42%), Gaps = 19/349 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L RN +L L + +F+GDNG GKT++LE I L GR FR Sbjct: 6 LAFQGLRNLQALELSPGPRINLFIGDNGTGKTSLLEGIHVLGMGRSFRTRQLRHAI---- 61 Query: 70 PSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + + G + G + I + R D +++ + V +L + L + + P Sbjct: 62 -AHEEDGVTLHGRLSGEPPLPIGVRRRRDSDELEMRLAGERVGRVSQLVETLPLQLINPD 120 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR FLD VF + F R ++ RN LL G + + E Sbjct: 121 AFRLLEGSPAGRREFLDWGVFHVKHDFLDAWKRFRRALKHRNALLRHGRMSDASMGAWER 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEY 247 ++A G +++ R I+A + E ++ P ++L D K + Sbjct: 181 ELAHWGARLDELRRAWIDAFLPVFQETLEGLIALPGLQLRYARGWD---------RKRQL 231 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVGIFLAHARL 306 A L R+ D T GP R+DL + + AI I S G+QK+V+ + LA RL Sbjct: 232 ADVLEQSRETDRQMGFTQQGPQRADLGIRLGRRPAIEIL--SRGQQKLVVSALKLAQGRL 289 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + TG + + L+D++ A LD + R + + Q F+T D + Sbjct: 290 LERLTGRSCVYLIDDLPAELDGEHRRVFCEWLAHMRCQAFITSVDPNAL 338 >gi|302185842|ref|ZP_07262515.1| recombination protein F [Pseudomonas syringae pv. syringae 642] Length = 367 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 16/345 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++PR ++ ++ RN L G D++ ++ + Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ +I+ R I AL + E E L+L+ + +D+ ++E + Sbjct: 182 ELCLASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L D T GP R+DL + A I S G+QK+V+ + +A L+ Sbjct: 234 TVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|229917452|ref|YP_002886098.1| DNA replication and repair protein RecF [Exiguobacterium sp. AT1b] gi|259563366|sp|C4KZZ0|RECF_EXISA RecName: Full=DNA replication and repair protein recF gi|229468881|gb|ACQ70653.1| DNA replication and repair protein RecF [Exiguobacterium sp. AT1b] Length = 372 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 95/363 (26%), Positives = 155/363 (42%), Gaps = 65/363 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + +RNY +L L F Q + +G+N GKTN+LE+I L+ + R + D Sbjct: 1 MHLKSIRLQNYRNYETLELDFSEQTNVLIGENAQGKTNLLESIYVLALAKSHR--TTQDR 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL---------QINDVVIRVVDE 115 IG + + A +EG ++ R SV+ L ++N + R + + Sbjct: 59 ELIG---WEADAASIEG---------RIHKRTGESVQSLSFSPKGKKAKLNHLEQRRLSD 106 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-- 173 + P I G RRRFLD + + P + + + + ++ RN LL Sbjct: 107 YVGAFNVVLFAPEDLAIVKGSPQGRRRFLDMEIGQVSPVYLHELNQYLKTLKQRNALLKQ 166 Query: 174 --TEGYFDSSWCSSIEAQMAELGVKINIARVEMINA---------------LSSLIMEYV 216 T+G D + + Q+ EL VKI + R I+ L +L ++YV Sbjct: 167 LSTKG-GDETLLEVLTDQLIELAVKIVMRRYHFIDQLEKWANPIHSGITRDLETLTIQYV 225 Query: 217 ----QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 QKE F +Q F E Y +K R+ + TL GPHR D Sbjct: 226 SDTFQKERFSK-------------EQMF----ETYRQKFDKIRENERRRGVTLFGPHRDD 268 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 + Y + GS G+Q+ + + LA LI G P+LLLD++ + LD+ ++ Sbjct: 269 FEL-YVNNRNVQTFGSQGQQRTAALSLKLAEIELIHEEVGEYPLLLLDDVLSELDDHRQT 327 Query: 333 ALF 335 L Sbjct: 328 HLL 330 >gi|172056049|ref|YP_001812509.1| DNA replication and repair protein RecF [Exiguobacterium sibiricum 255-15] gi|226737799|sp|B1YGB5|RECF_EXIS2 RecName: Full=DNA replication and repair protein recF gi|171988570|gb|ACB59492.1| DNA replication and repair protein RecF [Exiguobacterium sibiricum 255-15] Length = 384 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 97/378 (25%), Positives = 165/378 (43%), Gaps = 27/378 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + +S +RNY SL L F + + +G+N GKTN+LEAI L+ + R ++ Sbjct: 1 MRLDSVRLSHYRNYESLELSFSEKTNVLIGENAQGKTNLLEAIYVLALAKSHRTTHDKEL 60 Query: 65 TRIGSPSFFSTFARVEG----MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + + + ARVEG G I + +R ++ ++N + R + + L Sbjct: 61 IQWDAET-----ARVEGRIHKRRGSHSQEIAISSRGKKA----KLNHLEQRRLSDYVGAL 111 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-- 178 I P I G RRRFLD + + P + + + ++++ RN LL + Sbjct: 112 NIVLFAPEDLHIVKGSPQIRRRFLDMEIGQVSPVYLHELSQYLKVLKQRNALLKQLSMKG 171 Query: 179 -DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQK--ENFPHIKLSLTGFL 232 D ++ + QM L VKI R I L I E + + E I S T F Sbjct: 172 GDETFLDVLTEQMITLAVKIVQRRHHFIAQLEKWARPIHEGISRGQEQLVLIYRSDT-FS 230 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + D + Y +K F K + + R TL GPHR D ++ + + +GS G+ Sbjct: 231 NDLLD--VEGMTASYMQK-FGKMKTNEIRRGVTLFGPHRDDFEMEVNGRNVQ-TYGSQGQ 286 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 Q+ + + LA LI G P+LLLD++ + LD+ ++ L + I T + Sbjct: 287 QRTAALSLKLAEIELIHEEVGEYPLLLLDDVLSELDDHRQTHLLDTMQQKVQTILTTTSV 346 Query: 352 KSVFDSLNETAKFMRISN 369 + + AK + Sbjct: 347 DGIAHETIKQAKLFHVKQ 364 >gi|227831833|ref|YP_002833540.1| DNA replication and repair protein [Corynebacterium aurimucosum ATCC 700975] gi|262183097|ref|ZP_06042518.1| recombination protein F [Corynebacterium aurimucosum ATCC 700975] gi|254790471|sp|C3PE74|RECF_CORA7 RecName: Full=DNA replication and repair protein recF gi|227452849|gb|ACP31602.1| DNA replication and repair protein [Corynebacterium aurimucosum ATCC 700975] Length = 392 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 101/378 (26%), Positives = 171/378 (45%), Gaps = 34/378 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L++ +FR++ L L T+FVG NG GKTNI+EAI + + R A A + R Sbjct: 3 IRDLDVRDFRSWPELTLRLKPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVAHDAPLVR 62 Query: 67 IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + S A +G E A + IK + QIN ++ EL ++ Sbjct: 63 QGAHNARISATAVNQGRELTAHLLIK-----PHAANQAQINRTRLKSPRELLGVVKTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178 P + G RR++LD ++ + PR D++++++ RN LL GY Sbjct: 118 SPEDLSLVRGEPAARRQYLDDIIASRTPRLAGVKADYDKVLKQRNALLKSASPSLRRGYS 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLT 229 DS S++ + Q++ LG ++ AR+ +++ L LI + E+ P + Sbjct: 178 DSDGASALATLDVWDTQLSSLGAQVIQARLALVDELRELIPAAYAGLAPESRP-AAIDYK 236 Query: 230 GFLDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG- 287 +D + A+ E A K R+ + +L+GPHR DL+++ + A G Sbjct: 237 STVDISDREVIEAMMLTELATK----RQREIERGISLVGPHRDDLVLNL---GTSPAKGF 289 Query: 288 -STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + + LA L+ G PIL+LD++ A LD +R L R+ + Sbjct: 290 ASHGETWSYAISLRLAEFNLLRQD-GTDPILILDDVFAELDAKRREKLVRLAAGAEQVLI 348 Query: 347 MTGTDKSVFDSLNETAKF 364 D+ + +L +F Sbjct: 349 TAAVDEDLPGNLQPIERF 366 >gi|226356387|ref|YP_002786127.1| recombination protein F [Deinococcus deserti VCD115] gi|259563361|sp|C1CW06|RECF_DEIDV RecName: Full=DNA replication and repair protein recF gi|226318377|gb|ACO46373.1| putative DNA replication and repair protein RecF [Deinococcus deserti VCD115] Length = 363 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 98/365 (26%), Positives = 156/365 (42%), Gaps = 41/365 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L+ +RN A L F A T G+NG GKTN+LEA G DV Sbjct: 4 VQLESLSTLNYRNLAPCTLSFPAGVTGVFGENGAGKTNLLEAAYLALTG-------LTDV 56 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---------RCLQINDVVIRVVDE 115 TR+ V+ EG A + LE+ S+ R L+++ V +R D Sbjct: 57 TRLEQ--------LVQSGEGEAYVRADLESGGSLSIQEVGLGRGRRQLKVDGVRVRAGD- 107 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L + + W+ P + G RR FLD ++ + R+ +++ ++R + RN L Sbjct: 108 LPRGSAV-WIRPEDSELVFGSPSGRRNFLDALLSRLSARYAQQLARYDRTVSQRNAALRS 166 Query: 176 GYFDSSWCSSI-EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 G W + + + +LG I + R + LS L E E K + G Sbjct: 167 G---EEWAMHVWDDALVKLGSDIMLFRRRALTRLSELAAE--ANEALGSRKPLVLGL--- 218 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 S E YA L R + T GPHR DL + D T + S GE + Sbjct: 219 ----SESTTPETYAHDLRSRRAEELARGSTATGPHRDDLTMTLGDFPAT-EYASRGEGRT 273 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + + A L++ G P+LL+D+ SA LD +R L + + Q +TGT+++ Sbjct: 274 IALALRRAELELLAERFGEKPVLLIDDFSAELDPTRRAFLLDLAASV-PQAIVTGTEQAP 332 Query: 355 FDSLN 359 +L Sbjct: 333 GAALT 337 >gi|184154480|ref|YP_001842820.1| recombination protein F [Lactobacillus fermentum IFO 3956] gi|226737808|sp|B2GEV1|RECF_LACF3 RecName: Full=DNA replication and repair protein recF gi|183225824|dbj|BAG26340.1| DNA replication and repair protein RecF [Lactobacillus fermentum IFO 3956] Length = 373 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 91/357 (25%), Positives = 164/357 (45%), Gaps = 21/357 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +S +RNY L + F + +G+N GKTN+LEAI L+ + R A D Sbjct: 3 LQELQLSHYRNYEELAVTFAPGINVLIGENAQGKTNLLEAIYLLAFTKSHRTAK--DREL 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 IG + ARV G+ A + LE + S + +++N + + + +L + Sbjct: 61 IG---WHQKLARVSGVVERASGRLPLEVQISTSGKRVKVNHLFQKRLSTYVGNLNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182 P + G + RR+F+D + ++ + F + + RN L + + D Sbjct: 118 PEDLALVKGAPVNRRQFMDMEFGQMSSKYLYNVSRFNQQLAQRNAYLRQFKYGQQSDRIL 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLSLTGFLDGKFD 237 I Q+A +G ++ +AR +++ L E QKE +S D + Sbjct: 178 LGVITDQLASVGGEVVVARQQLVKRLGKWAAELHHHISKQKEELSLQYVSQVEVDDQTTE 237 Query: 238 QSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + A L+ Y++ + R+++ + +LIGP R D+ + + GS G+Q+ Sbjct: 238 EEAVAQLRRLYSEN--EEREIEHGT--SLIGPQRDDIHFIVNGQNVQ-RFGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA L+ TG P+LLLD++ + LD+D++ L + D Q F+T T S Sbjct: 293 LAVKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQD-KVQTFITTTSLS 348 >gi|16802053|ref|NP_463538.1| recombination protein F [Listeria monocytogenes EGD-e] gi|46906229|ref|YP_012618.1| recombination protein F [Listeria monocytogenes serotype 4b str. F2365] gi|47097287|ref|ZP_00234845.1| DNA replication and repair protein RecF [Listeria monocytogenes str. 1/2a F6854] gi|224503072|ref|ZP_03671379.1| recombination protein F [Listeria monocytogenes FSL R2-561] gi|226222644|ref|YP_002756751.1| RecF protein [Listeria monocytogenes Clip81459] gi|254824775|ref|ZP_05229776.1| recombination protein F [Listeria monocytogenes FSL J1-194] gi|254827429|ref|ZP_05232116.1| recombination protein F [Listeria monocytogenes FSL N3-165] gi|254851837|ref|ZP_05241185.1| recombination protein F [Listeria monocytogenes FSL R2-503] gi|254899681|ref|ZP_05259605.1| recombination protein F [Listeria monocytogenes J0161] gi|254913116|ref|ZP_05263128.1| DNA replication and repair protein RecF [Listeria monocytogenes J2818] gi|254937497|ref|ZP_05269194.1| recombination protein F [Listeria monocytogenes F6900] gi|255520065|ref|ZP_05387302.1| recombination protein F [Listeria monocytogenes FSL J1-175] gi|284803261|ref|YP_003415126.1| recombination protein F [Listeria monocytogenes 08-5578] gi|284996402|ref|YP_003418170.1| recombination protein F [Listeria monocytogenes 08-5923] gi|300763381|ref|ZP_07073379.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL N1-017] gi|20978583|sp|Q8YAV8|RECF_LISMO RecName: Full=DNA replication and repair protein recF gi|51316269|sp|Q725G6|RECF_LISMF RecName: Full=DNA replication and repair protein recF gi|259563663|sp|C1L302|RECF_LISMC RecName: Full=DNA replication and repair protein recF gi|16409364|emb|CAC98220.1| RecF protein [Listeria monocytogenes EGD-e] gi|46879493|gb|AAT02795.1| DNA replication and repair protein RecF [Listeria monocytogenes serotype 4b str. F2365] gi|47014332|gb|EAL05307.1| DNA replication and repair protein RecF [Listeria monocytogenes str. 1/2a F6854] gi|225875106|emb|CAS03794.1| RecF protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599807|gb|EEW13132.1| recombination protein F [Listeria monocytogenes FSL N3-165] gi|258605129|gb|EEW17737.1| recombination protein F [Listeria monocytogenes FSL R2-503] gi|258610099|gb|EEW22707.1| recombination protein F [Listeria monocytogenes F6900] gi|284058823|gb|ADB69764.1| recombination protein F [Listeria monocytogenes 08-5578] gi|284061869|gb|ADB72808.1| recombination protein F [Listeria monocytogenes 08-5923] gi|293591118|gb|EFF99452.1| DNA replication and repair protein RecF [Listeria monocytogenes J2818] gi|293594014|gb|EFG01775.1| recombination protein F [Listeria monocytogenes FSL J1-194] gi|300515658|gb|EFK42707.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL N1-017] Length = 370 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 92/371 (24%), Positives = 162/371 (43%), Gaps = 48/371 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG S+ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 A++ + + R + I L + + + + LK EY Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228 Query: 251 L-FDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + +G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 ITLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + I LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFDSLNETAK 363 S D +ET K Sbjct: 347 SGID--HETLK 355 >gi|314934957|ref|ZP_07842316.1| DNA replication and repair protein RecF [Staphylococcus caprae C87] gi|313652887|gb|EFS16650.1| DNA replication and repair protein RecF [Staphylococcus caprae C87] Length = 371 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 93/384 (24%), Positives = 169/384 (44%), Gaps = 29/384 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IR-----FKADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSKLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230 + + Q A+ +K+ + R I L L E + + P +KLS Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLGLKYLPSLKLS--- 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +++ L EE + L D + + L GPHR DL + + +GS G Sbjct: 233 ----DYEKEESELLEEVIELLNDNLQREKERGVCLYGPHRDDLGFN-VNGMDAQTYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346 Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373 D + AK RIS + L Sbjct: 347 SVDGIDHEIMNNAKLYRISQGELL 370 >gi|217965930|ref|YP_002351608.1| DNA replication and repair protein RecF [Listeria monocytogenes HCC23] gi|254790481|sp|B8DAQ5|RECF_LISMH RecName: Full=DNA replication and repair protein recF gi|217335200|gb|ACK40994.1| DNA replication and repair protein RecF [Listeria monocytogenes HCC23] gi|307569528|emb|CAR82707.1| DNA replication and repair protein [Listeria monocytogenes L99] Length = 370 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 158/364 (43%), Gaps = 46/364 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG S+ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249 A++ + + R + I L + + + + LK EY A Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228 Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 VTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + I LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFD 356 S D Sbjct: 347 SGID 350 >gi|330470836|ref|YP_004408579.1| recombination protein F [Verrucosispora maris AB-18-032] gi|328813807|gb|AEB47979.1| recombination protein F [Verrucosispora maris AB-18-032] Length = 377 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 94/363 (25%), Positives = 165/363 (45%), Gaps = 36/363 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y + + + I +G NGVGKTN++EA+ +++ R A+ A + R Sbjct: 3 VRRLELVDFRSYERVGVDLEPGPNILIGANGVGKTNLVEALGYVATLDSHRVATDAPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+ + A V EG E + ++LE ++ R R D L LR+ Sbjct: 63 MGATAAVIRCAVVHEGRE----LLVELEIVPGKANRARLGRSPARRARDVLGA-LRLVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178 P + G ERRR+LD ++ PR+ D++R+++ RN LL Y Sbjct: 118 APEDLELVRGDPAERRRYLDDLLVLRQPRYAGVRADYDRVVKQRNALLRTAYLARKTGGT 177 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----------PHIK 225 D S + + +A G ++ R+E++ AL+ + + P ++ Sbjct: 178 RGGDLSTLAVWDTHLARHGAELLAGRLELVAALTPHVAKAYDAVAAGRGAAAIAYRPSVE 237 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 L+ + D+ L + A L + R + TL+GPHR DL ++ Sbjct: 238 LT-----EPTTDRE--TLAKVLAAALEEQRSAEIERGTTLVGPHRDDLTLNLGPLPAK-G 289 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 + S GE + + LA L+ N G P+L+LD++ A LD +R+ L +V SQ+ Sbjct: 290 YASHGESWSYALALRLAGYDLLRND-GIEPVLVLDDVFAELDAGRRDRLADLVGG-ASQL 347 Query: 346 FMT 348 +T Sbjct: 348 LVT 350 >gi|317495091|ref|ZP_07953462.1| DNA replication and repair protein RecF [Gemella moribillum M424] gi|316914798|gb|EFV36273.1| DNA replication and repair protein RecF [Gemella moribillum M424] Length = 380 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 92/384 (23%), Positives = 170/384 (44%), Gaps = 32/384 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI+ L + FRNY SL + IF GDN GKTNI+E+I LS G+ +R S + Sbjct: 1 MKIRELKLLYFRNYTSLNIATHPSLNIFFGDNANGKTNIVESIFCLSLGKSYRTKSDTEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + + + L DI + + + + +I + + E L + Sbjct: 61 IMFGEDAAAMSCVLNKNNKNL-DIMLGISNKG----KSAKIAGIKKNKLTEFVGELNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P +I G RR F++R + + + + ++ L++ RN L + + Sbjct: 116 FSPEDLQIVKGSPSLRREFINREFYQFSRIYHKYHLMYQHLLKQRNSYLKDMKKNPKDEI 175 Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSL-------------IMEYVQKENFPHIK 225 ++ ++ +Q+ ++ + I RV + ++ L I+E K + + Sbjct: 176 SLTYLETLTSQLVKIAMYITRERVSFVKDIAKLAYENMLNISNGNEILEIKYKSSILDV- 234 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 L ++ D KF + + E KK FD D M T IGPH+ DL + + Sbjct: 235 LGVSSVSDAKFSEE--NIVELMMKKSFD----DIMRGNTKIGPHQDDLEF-FINNLEART 287 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 + S G+Q+ +++ + L+ + TG PILLLD++ + LD++++ L + + Sbjct: 288 YASQGQQRSIVLSLKLSEIHYLKQKTGDYPILLLDDVLSELDKNRQLKLLDAIDENVQTF 347 Query: 346 FMTGTDKSVFDSLNETAKFMRISN 369 T + + + L E AK +I N Sbjct: 348 ITTPSITDIKEDLLEKAKVFKIDN 371 >gi|292669296|ref|ZP_06602722.1| recombination protein F [Selenomonas noxia ATCC 43541] gi|292649137|gb|EFF67109.1| recombination protein F [Selenomonas noxia ATCC 43541] Length = 373 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 99/377 (26%), Positives = 165/377 (43%), Gaps = 45/377 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L++ +RNY L L FD IF+G N GKTNI+EA+ + + GR R +S A++ Sbjct: 1 MQITELSLRSYRNYEDLALGFDDGAQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G A I ++ D R ++ ++LR Sbjct: 61 IRMGDDG--------------AHIGLRFVRHDVPRELSFTFQRGARRRIEYAGENLRQRD 106 Query: 125 LV---------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 LV P + G RRR+LD + P + ++ + ++R R +L + Sbjct: 107 LVGILPMVLFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAVLKD 166 Query: 176 -----GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 D+ W + + A+ A V IA V + ALS+ + + +L+L Sbjct: 167 IRERLAPVDALLPWDAQL-ARSAAWIVTRRIAAVADLGALSTRVQAVLADGE----ELTL 221 Query: 229 TGFLDGKFDQSFCALKEEYAKK--------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 + + G D+ KE A++ L + R D + T GPH DL++ D Sbjct: 222 SYEIAGA-DEDVPGAKEGMAQRLELWYNEMLIENRARDIVRAATGTGPHLDDLVL-RVDG 279 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 ++GS G+Q+ + + +A + T APILLLD++ + LD D+R AL + Sbjct: 280 MSLRSYGSQGQQRTGALALKIAELFYLREKTSEAPILLLDDVMSELDADRRRALLDFIRC 339 Query: 341 IGSQIFMTGTDKSVFDS 357 Q F+T TD + F + Sbjct: 340 ERIQTFITATDAAYFPA 356 >gi|291482373|dbj|BAI83448.1| recombination protein F [Bacillus subtilis subsp. natto BEST195] Length = 370 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 85/368 (23%), Positives = 162/368 (44%), Gaps = 49/368 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L +S +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ R Sbjct: 3 IQNLELSSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG + +I ++ + + ++N + + + + L Sbjct: 63 -----WDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRFLD + + P + + +++++ RN L T D + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDRTM 177 Query: 183 CSSIEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIKLS 227 + Q+ E+ K+ + R++ L L ++Y H L Sbjct: 178 LDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKY-------HTALD 230 Query: 228 LTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 ++ LD + ++F L+E+ ++ TL GPHR D++ Y + Sbjct: 231 VSDPLDLSKIGDSYQEAFSKLREKEIERGV-----------TLSGPHRDDVLF-YVNGRD 278 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 +GS G+Q+ + + LA LI G PILLLD++ + LD+ +++ L + Sbjct: 279 VQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-R 337 Query: 343 SQIFMTGT 350 Q F+T T Sbjct: 338 VQTFVTTT 345 >gi|227889154|ref|ZP_04006959.1| recombination protein F [Lactobacillus johnsonii ATCC 33200] gi|227850383|gb|EEJ60469.1| recombination protein F [Lactobacillus johnsonii ATCC 33200] Length = 374 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 160/356 (44%), Gaps = 32/356 (8%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +FRN+ L++ FD IF+G N GKTN+LEAI FL+ R R S ++ R G Sbjct: 8 LKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 S FA ++G + + ++L+ R + + +N + + + + P Sbjct: 65 --SKFAGLQGKVHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAILFSPEDLA 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + G RRRF+D I+ + + + ++++ RN L + D + + Sbjct: 123 LVKGAPSTRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDLVFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTGFLDGKFD 237 Q+A + +I R++ I L+S E +Q P +K +T D + Sbjct: 183 DQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVK-EITP--DDDVE 239 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVV 295 + + Y K R + TL GPHR DL DK AH S G+Q+ + Sbjct: 240 TIYQKVITSYKK----NRPNEIRKGTTLSGPHRDDLDFLINDKN---AHDFASQGQQRTI 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + LA +L+ T PILLLD++ + LD ++++L + +Q F+T TD Sbjct: 293 SLSVKLAEIQLVHELTQEYPILLLDDVMSELDNRRQSSLLNYIHG-KTQTFITTTD 347 >gi|326390361|ref|ZP_08211920.1| DNA replication and repair protein RecF [Thermoanaerobacter ethanolicus JW 200] gi|325993638|gb|EGD52071.1| DNA replication and repair protein RecF [Thermoanaerobacter ethanolicus JW 200] Length = 362 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 89/354 (25%), Positives = 161/354 (45%), Gaps = 21/354 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRN ++ F IF G N GK+N+LE+I LS GR FR + ++ + Sbjct: 3 VKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTELIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F + + + D I+ + + + + +++N I+ EL L Sbjct: 63 FGEDYF---YVKAIICQENNDKKIEFGYKKNEN-KVIKVNGNKIKSTSELLGQLLTVIFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183 P I RR++LD + ++ + ++ + +++ RN+LL EG S Sbjct: 119 PEDLNIIKEGPSYRRKYLDSCISVVEKNYLYNLMQYNKILINRNKLLKTIKEGK-SRSIL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G KI + R + + I ++ + E + L+ G D ++ Sbjct: 178 EVFDDQLVEYGAKIIVVRQSYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEEIV 237 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298 +E K D +D T +GPHR D +I++ D + + S G+Q+ V + Sbjct: 238 KKRLKEKLLKNID---LDLKYLTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTVALC 291 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ ++ TG PILLLD++ + LDE+++ + + G Q F+T T K Sbjct: 292 LKLSEFEILKKETGEKPILLLDDVMSELDENRKKYILERLQ--GFQTFITHTTK 343 >gi|291457886|ref|ZP_06597276.1| RecF protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291419430|gb|EFE93149.1| RecF protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 379 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 16/350 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + FRNY +L L I G+N GKTN+LEAI + +R D+ Sbjct: 1 MQIDSLELQNFRNYENLSLHLCRGSNILYGENAQGKTNLLEAIFMACTAKSYRFTKDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G ++ +G A I + + ++S + + I+++ IR EL I Sbjct: 61 IRFGEEE---AHIKLILRKGSAPYRIDMHLKRNQS-KGIAIDEIPIRRASELFGIANIVC 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + + RRRFLD + ++ + + + + R++ RNRLL + F + Sbjct: 117 FSPEDLSLIKDGPVVRRRFLDLELCQLNRGYLQELGRYGRILNQRNRLLRDIPFKAGLLD 176 Query: 185 SI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 ++ + Q+ G+ + R + LS +I E H +LS G + D Sbjct: 177 TLSVWDEQLLSSGIALIEIRSAFMKRLSPIISEI-------HGRLS-GGREKIEVDYEPN 228 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 E + KKL R+ + +L GPHR D+ + I GS G+Q+ + + L Sbjct: 229 VKAENFRKKLSLLRESELKQHLSLAGPHRDDISFRIDGRDIR-KFGSQGQQRTAALALKL 287 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + L+ PILLLD++ + LD ++N L +I+ D + I TG D Sbjct: 288 SEIELVREMIDDTPILLLDDVLSELDSARQNYLLKILKDTQNIISCTGLD 337 >gi|227514122|ref|ZP_03944171.1| recombination protein F [Lactobacillus fermentum ATCC 14931] gi|260662541|ref|ZP_05863436.1| DNA replication and repair protein RecF [Lactobacillus fermentum 28-3-CHN] gi|227087493|gb|EEI22805.1| recombination protein F [Lactobacillus fermentum ATCC 14931] gi|260553232|gb|EEX26175.1| DNA replication and repair protein RecF [Lactobacillus fermentum 28-3-CHN] gi|299782688|gb|ADJ40686.1| DNA replication and repair protein recF [Lactobacillus fermentum CECT 5716] Length = 373 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/357 (25%), Positives = 164/357 (45%), Gaps = 21/357 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +S +RNY L + F + +G+N GKTN+LEAI L+ + R A D Sbjct: 3 LQELQLSHYRNYEELAVTFAPGINVLIGENAQGKTNLLEAIYLLAFTKSHRTAK--DREL 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 IG + ARV G+ A + LE + S + +++N + + + +L + Sbjct: 61 IG---WHQKLARVSGVVERASGRLPLEVQISTSGKRVKVNHLFQKRLSTYVGNLNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182 P + G + RR+F+D + ++ + F + + RN L + + D Sbjct: 118 PEDLALVKGAPVNRRQFMDMEFGQMSSKYLYNVSRFNQQLAQRNAYLRQFKYGQQSDRIL 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLSLTGFLDGKFD 237 I Q+A +G ++ +AR +++ L E QKE +S D + Sbjct: 178 LGVITDQLASVGGEVVVARQQLVKRLGKWAAELHHHISKQKEELSLQYVSQVEVDDQTTE 237 Query: 238 QSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + A L+ Y++ + R+++ + +LIGP R D+ + + GS G+Q+ Sbjct: 238 EEAVAQLRRLYSEN--EEREIEHGT--SLIGPQRDDIHFIVNGQNVQ-RFGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA L+ TG P+LLLD++ + LD+D++ L + D Q F+T T S Sbjct: 293 LAVKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQD-KVQTFITTTSLS 348 >gi|261368841|ref|ZP_05981724.1| DNA replication and repair protein RecF [Subdoligranulum variabile DSM 15176] gi|282569111|gb|EFB74646.1| DNA replication and repair protein RecF [Subdoligranulum variabile DSM 15176] Length = 367 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 98/376 (26%), Positives = 167/376 (44%), Gaps = 23/376 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L +++ RN A L D T+ G NG GKTN+LEA+ L+ G+ FR A A++ Sbjct: 1 MRLEHLELTDHRNIAHAVLDPDPNLTVLCGPNGQGKTNLLEAVWLLTGGKSFRGAKDAEL 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S F +G E +++ + R R ++N V L + + Sbjct: 61 IRRGCEFSVLEGFFETDGSEKTIRLTVGAKG-SQRPGRTAKLNGVDQGRAAALAGNFQAV 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + + G RRRFLD + + + + + RL+ +N LL + Sbjct: 120 VFEPDLLALVKGGPEGRRRFLDSALCQVFRPYLVALRRYMRLVAQKNALLKSYDITPNGA 179 Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 ++A Q+A+ G +I R + + AL+ +N+ I F Sbjct: 180 LLLDAYNEQLAQYGGQIMAHRQKFVEALAP-----AAAQNYAEISHGAEEF---SLRYQC 231 Query: 241 C---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 C + A+KL R + + L GPHR DL + + I GS G+Q+ ++ Sbjct: 232 CAAAPTADALAEKLAALRSAELRAGFCLTGPHREDLDLQLDGQPARI-FGSQGQQRSCVL 290 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFMTGTDKSVFD 356 + LA A ++ G P+LLLD++ + LD+D++ L +T +G Q +T D + F Sbjct: 291 AMKLAEATVVGEFFGQHPVLLLDDVLSELDDDRQTYL---LTRMGEHQTIVTTCDTAAFA 347 Query: 357 SLNETAKFMRISNHQA 372 N K + + QA Sbjct: 348 RTN--GKIVYVKGGQA 361 >gi|257466632|ref|ZP_05630943.1| RECF protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917786|ref|ZP_07914026.1| DNA replication and repair protein recF [Fusobacterium gonidiaformans ATCC 25563] gi|313691661|gb|EFS28496.1| DNA replication and repair protein recF [Fusobacterium gonidiaformans ATCC 25563] Length = 364 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/356 (21%), Positives = 169/356 (47%), Gaps = 21/356 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + ++ RN + ++ + +F G NG GKT+ILEAI F + G FR +++ Sbjct: 1 MKVLSIQLNHVRNLKNQEIIISSPIQVFYGKNGQGKTSILEAIYFAATGLSFRTKHSSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR----SVRCLQINDVVIRVVDELNKHL 120 R + + + +S+ +E + + Q+ E +L Sbjct: 61 IRYTKNTLSCSLGYQDQFSK-KSLSVSIENEKKQFFFLGKKISQM---------EFYGNL 110 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + + +P + +G RR F+DR + I+ + +++ F L++ RN+ L E + + Sbjct: 111 NVIYYIPEDVMLINGSPSVRRLFMDREISQINVFYLQQLKKFSHLLKIRNKYLKEKLYQN 170 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ----KENFPHIKLSLTGFLDGKF 236 E + E G + R + +SS I Q KE ++L F++ + Sbjct: 171 EEFLIYEKEFVECGSYLIEQRNHYLQLMSSFIKNIYQDLFDKE--KELQLQYKTFIEFQN 228 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 D + ++EE+ K++ ++ + +++GPH+ + I ++ + S GE+K ++ Sbjct: 229 DVTLSKIQEEFWKEIKKKKEKEIQYGFSMVGPHKDEFIF-LLERQDAKLYASQGEKKSII 287 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ ++S PI+L+D+++++ DE++ +++ + + + Q+F+T T++ Sbjct: 288 FSLKLSEIDILSKNKKEMPIVLIDDVTSYFDEERCHSVLQYLYEKKVQVFITSTER 343 >gi|227328543|ref|ZP_03832567.1| recombination protein F [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 361 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 159/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F R++G E + + + D VR I+ V EL + L I + P Sbjct: 66 PEFV-LHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F +P + +RL+R RN L + ++ +W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFAAWSNMKRLLRQRNAALRQVSHYGQLRAW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R + A+++ I + P LS + F G +S E Sbjct: 178 DQELVPLAERISEWRAQYSAAIANDIAATC-TQFLPEFSLSFS-FQRGWDKES------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D M T +GPH++D + A+ S G+ K+++ + LA Sbjct: 230 YAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ G + L+D+ ++ LD +R L + +Q+F++ + + + D + E K Sbjct: 289 LTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGKMF 348 Query: 366 RISN 369 R+ Sbjct: 349 RVEQ 352 >gi|116490130|ref|YP_809653.1| DNA replication and repair protein RecF [Oenococcus oeni PSU-1] gi|290889524|ref|ZP_06552614.1| hypothetical protein AWRIB429_0004 [Oenococcus oeni AWRIB429] gi|122277679|sp|Q04HR3|RECF_OENOB RecName: Full=DNA replication and repair protein recF gi|116090855|gb|ABJ56009.1| DNA replication and repair protein RecF [Oenococcus oeni PSU-1] gi|290480722|gb|EFD89356.1| hypothetical protein AWRIB429_0004 [Oenococcus oeni AWRIB429] Length = 373 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/356 (25%), Positives = 158/356 (44%), Gaps = 29/356 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRNY SL++ F + +GDN GKTN+LEAI LS R R + D+ Sbjct: 6 LKLKDFRNYKSLQVDFSNSINVLIGDNAQGKTNLLEAIYILSMARSHRDNNDRDLI---- 61 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 ++ S F+ + G LE R R+ + + +N + + + +L P Sbjct: 62 -NWSSDFSDITGEVQSKMGKFPLEVRITRTGKKVFVNHLTENRLSDYIGNLHTVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-------TEGYFDSSW 182 + G RR+F+D + + ++ + +++ RN L D + Sbjct: 121 LDLVKGSPGVRRKFIDSEFGQMSANYLFNLLQYRSVLKNRNAYLKNIKWIGNNPKIDEDY 180 Query: 183 CSSIEAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q+ + G +I R ++ L S I + + + IK + +D DQS Sbjct: 181 LKVLNDQLIDFGSEIIFQRFVLVKELEKYSYQIHKAISRNEKLTIKYASFSGID---DQS 237 Query: 240 FCALKEEYAKKLFDGRKMDSMSRR-----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 KEE + K+F+ + + + +R T +GPH DL K + + S G+Q+ Sbjct: 238 ---TKEEIS-KIFNNQLLKNKTRELFLKSTSVGPHHDDLKFSINGKEVG-SFASQGQQRT 292 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA ++ TG PILLLD++ + LD D++ L + D Q F+T T Sbjct: 293 TALSVRLAEIEMMKYETGEYPILLLDDVLSELDGDRQTQLLNFIQD-KVQTFLTTT 347 >gi|313887210|ref|ZP_07820906.1| DNA replication and repair protein RecF [Porphyromonas asaccharolytica PR426713P-I] gi|332300489|ref|YP_004442410.1| DNA replication and repair protein recF [Porphyromonas asaccharolytica DSM 20707] gi|312923439|gb|EFR34252.1| DNA replication and repair protein RecF [Porphyromonas asaccharolytica PR426713P-I] gi|332177552|gb|AEE13242.1| DNA replication and repair protein recF [Porphyromonas asaccharolytica DSM 20707] Length = 371 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 99/363 (27%), Positives = 163/363 (44%), Gaps = 35/363 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ F+N A+ F + F G NG+GKTN+L+AI +LS RG + R G+ Sbjct: 6 LSVINFKNVATANCHFAPKLNCFFGGNGMGKTNLLDAIHYLSVVRGHLGTTDRYAIRQGA 65 Query: 70 PSFFSTFARVEGM----EGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A ++G +G D IS+++ T +RS + + + R D + ++ + Sbjct: 66 QE-----AIIQGEYLWDDGQEDKISLRIST--ERSKQLSRNGRLYKRHSDHIGRY-PLVI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P R+ G S ERRR +DR++ D + +I++ R + RN +L + + Sbjct: 118 ISPHDQRLIRGGSDERRRSVDRILSQQDATYLANLINYNRALDQRNNMLRNQIHEPALMD 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSFC 241 +E +A G+ + R + L F I L ++ F Sbjct: 178 ILEETLATTGLAVTTMRQAYVEELVP---------TFDQIYQHLAAGVERAVLSFSAGSA 228 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD---LIVDYCDKAITIAHGSTGEQKVVLVG 298 + EE + L +GR+ D T G HR D L+ + + I GS G+ K L+ Sbjct: 229 STAEEQLRILRNGRQRDYEYGFTATGCHRDDFEMLLGEILMRKI----GSEGQNKTYLIA 284 Query: 299 IFLAHARLISN--TTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVF 355 LA R + T AP+LLLD+I LD D+ + +V TD QIF+T T++ Sbjct: 285 YKLAEYRYLQQHLTNQTAPLLLLDDIFDKLDSDRVERIIELVATDTFGQIFITDTNRKYL 344 Query: 356 DSL 358 D + Sbjct: 345 DEI 347 >gi|159027176|emb|CAO86808.1| recF [Microcystis aeruginosa PCC 7806] Length = 375 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 98/379 (25%), Positives = 182/379 (48%), Gaps = 52/379 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNYA L F+++ TI +G+N GK+N+LEAI L+ + R + D+ Sbjct: 3 LEHLHLHSFRNYAEQLLKFESKKTILLGNNAQGKSNLLEAIELLATLKSHRVSKDRDLV- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + S S FARV + G +++S+ L + R+ VIR L +HL ++ Sbjct: 62 LESDSEARIFARVNRLYGASELSLILRSSGRRT---------VIRDRQPLRRHLDFLGVI 112 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175 ++ FS L ++ RR +LD ++ ++P + + + +++R RN LL E Sbjct: 113 NAVQ--FSSLDLDLVRGGPEARRDWLDTLLIQLEPLYVHILQQYNQVLRQRNALLKEIRK 170 Query: 176 ------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKE 219 Y D S + Q+AE G ++ R ++ L L EY++ + Sbjct: 171 QELEGKVYADLSQLKLWDLQLAETGSRVTRRRARVLQRLIPLAQKWHESISGKTEYLELQ 230 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC- 278 P++ + ++ + K+ R + +++GPHR + VD+ Sbjct: 231 YIPNVPW---------VEDDVNGVQTAFLDKIETRRLAEKQLGTSVVGPHRDE--VDFLI 279 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 ++ ++GS G+Q+ +++ + LA +L+ G P+LLLD++ A LD +++N L + Sbjct: 280 NQNPAKSYGSQGQQRTLVLALKLAELQLLEQIIGEPPLLLLDDVLAELDIERQNQLLDAI 339 Query: 339 TDIGSQIFMTGTDKSVFDS 357 D Q +T T S F+S Sbjct: 340 ED-RFQTLITTTHLSSFES 357 >gi|284052471|ref|ZP_06382681.1| recombination protein F [Arthrospira platensis str. Paraca] Length = 379 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 180/363 (49%), Gaps = 20/363 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ +FRNY + + FDA TI VG+N GK+N+LEA+ LS + R D+ Sbjct: 3 LKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDLV- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRISWL 125 + + + A +E D+++ L ++ R+V IN V R +D L+ + + Sbjct: 62 LDNHAIAQITATLERDSSTLDLALTLRSQGRRTV---AINGQSVKRHLDFLSILNVVQFS 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 +D + G ERR +LDR++ ++P + + + +++R RN LL G + Sbjct: 119 SLDLD-LVRGSPAERRHWLDRLLIQLEPVYAYMLDQYNQVLRQRNALLKRGPMGGTTPEE 177 Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD----GKFDQ 238 + +AQ+A G ++ R +I L L + Q + L++T + K Q Sbjct: 178 LAVWDAQLAVTGARVLRRRDRVIERLEPLARMWHQSISGSSETLNITYQPNIEPPCKPQQ 237 Query: 239 SFCALKEEYAKKLF----DGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + E ++ F R + S+ TL+GPHR D+I ++ +GS+G+Q+ Sbjct: 238 RWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFT-INQTPARQYGSSGQQR 296 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 +++ + LA +LI + G P+LLLD++ A LD ++N L + +++ Q +T T Sbjct: 297 TLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLITTTHLG 355 Query: 354 VFD 356 FD Sbjct: 356 AFD 358 >gi|90415376|ref|ZP_01223310.1| recombination protein F [marine gamma proteobacterium HTCC2207] gi|90332699|gb|EAS47869.1| recombination protein F [marine gamma proteobacterium HTCC2207] Length = 370 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 161/361 (44%), Gaps = 31/361 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I + RN +++L Q I G NG GKT++LE+I L GR FR V + Sbjct: 6 LDIFQVRNLQAVQLSCHPQANIIFGANGSGKTSLLESIYLLGRGRSFRHRDLRVVVNSNA 65 Query: 70 PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + + G + + IK ++ R I+ ++ +L L + + Sbjct: 66 AELIVSARLNRDVSGSSHQLGIKRTSKGQFEAR---IDGQALQSAVQLVSELPLQLIDAH 122 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 + G ++RR+FLD VF ++ + F++ ++ RN+LL G S+ A Sbjct: 123 SFMLLEGGPLQRRQFLDWGVFHVEHTYTEVWRRFQKTLKQRNQLLRHGRMGEDMLSTWTA 182 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS---FC---- 241 ++ L +I R ++ LS I+++L+ F DG + S +C Sbjct: 183 ELIPLCEQITEFRQAYLSQLSK------------QIQIALSAF-DGLGEISLEYYCGWDD 229 Query: 242 --ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +L++ Y + + D ++ T G HR+D+ + D H S G+ K+++ + Sbjct: 230 SRSLQDVYVQD----QARDIATKTTNHGAHRADIRIK-VDGQPAADHLSRGQIKLLVYAL 284 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA A G + + LLD++ A LD R + + D+G Q F+TG DK F+ L Sbjct: 285 KLAQAGHYREKLGESCLFLLDDLPAELDYQHRGQVIAYLNDLGCQYFITGVDKQDFECLL 344 Query: 360 E 360 E Sbjct: 345 E 345 >gi|163757040|ref|ZP_02164146.1| putative DNA replication and repair protein [Kordia algicida OT-1] gi|161323044|gb|EDP94387.1| putative DNA replication and repair protein [Kordia algicida OT-1] Length = 376 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 102/361 (28%), Positives = 164/361 (45%), Gaps = 42/361 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N+ + F+ + VG+NGVGKTN+L+AI LS G+ + + R Sbjct: 20 LKKLSLINYKNFETNSFDFNQKINCLVGNNGVGKTNVLDAIYHLSFGKSYFNPVASQNIR 79 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121 G F ++G+ AD RD+ + L+ + + D+L++H+ Sbjct: 80 HG-----EDFFVIDGLYEKAD-------RDENIICSLKKGQKKMVKRNGKPYDKLSEHIG 127 Query: 122 ISWLV---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174 LV P+ D I G S RR+F+D ++ + ++ +I++ +++ RN LL Sbjct: 128 FLPLVIISPADRDLIIEG-SDTRRKFMDSVISQSNKKYLHNLINYNKVLSQRNSLLKYFA 186 Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHI-KLSLTGF 231 FD S Q+ E G +I R ++A + M Y N I +S Sbjct: 187 LNSTFDGDTLSIYNDQLHEFGSQIYAERSAFLDAFLPIFMTRYNAISNEKEIVNISYKSQ 246 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 L K F +L EE K D + + T +G H+ DL+ I GS G+ Sbjct: 247 LHEK---DFRSLLEESLAK-------DKVLQYTSVGTHKDDLLFTIETYPIK-KFGSQGQ 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTG 349 QK L+ + LA I PILLLD+I LDED+ + +V D G QIF++ Sbjct: 296 QKSFLIALKLAQFDFIKQLANVTPILLLDDIFDKLDEDRVAQIMALVNNEDFG-QIFISD 354 Query: 350 T 350 T Sbjct: 355 T 355 >gi|268318565|ref|YP_003292221.1| DNA replication and repair protein RecF [Lactobacillus johnsonii FI9785] gi|262396940|emb|CAX65954.1| DNA replication and repair protein RecF [Lactobacillus johnsonii FI9785] Length = 374 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 160/356 (44%), Gaps = 32/356 (8%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +FRN+ L++ FD IF+G N GKTN+LEAI FL+ R R S ++ R G Sbjct: 8 LKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 S FA ++G + + ++L+ R + + +N + + + + P Sbjct: 65 --SKFAGLQGKIHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAILFSPEDLA 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + G RRRF+D I+ + + + ++++ RN L + D + + Sbjct: 123 LVKGAPSTRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDLVFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTGFLDGKFD 237 Q+A + +I R++ I L+S E +Q P +K +T D + Sbjct: 183 DQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVK-EITP--DDDVE 239 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVV 295 + + Y K R + TL GPHR DL DK AH S G+Q+ + Sbjct: 240 TIYQKVITSYKK----NRPNEIRKGTTLSGPHRDDLDFLINDKN---AHDFASQGQQRTI 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + LA +L+ T PILLLD++ + LD ++++L + +Q F+T TD Sbjct: 293 SLSVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSSLLNYIHG-KTQTFITTTD 347 >gi|256851677|ref|ZP_05557065.1| recombination protein F [Lactobacillus jensenii 27-2-CHN] gi|260661606|ref|ZP_05862518.1| recombination protein F [Lactobacillus jensenii 115-3-CHN] gi|282934239|ref|ZP_06339516.1| DNA replication and repair protein RecF [Lactobacillus jensenii 208-1] gi|297205286|ref|ZP_06922682.1| recombination protein F [Lactobacillus jensenii JV-V16] gi|256615635|gb|EEU20824.1| recombination protein F [Lactobacillus jensenii 27-2-CHN] gi|260547663|gb|EEX23641.1| recombination protein F [Lactobacillus jensenii 115-3-CHN] gi|281301713|gb|EFA93980.1| DNA replication and repair protein RecF [Lactobacillus jensenii 208-1] gi|297149864|gb|EFH30161.1| recombination protein F [Lactobacillus jensenii JV-V16] Length = 374 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 160/365 (43%), Gaps = 40/365 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + +RN+ L F IF+G N GKTN+LEA+ FL+ R R S ++ R Sbjct: 3 LKQLKLQNWRNFEELETDFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV----VIRVVDELNKHLRI 122 G + A + G + + L+ R + + IN + + R V +LN L Sbjct: 63 FGQKA-----AILSGHVVKSQVETDLQVRINTKGKKAWINRIEQSKLSRYVGQLNAIL-- 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYF 178 P + G RRRF+D I+P + + ++++ +N L + Sbjct: 116 --FSPEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSK 173 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV-----QKENF-----PHIKLSL 228 D + + Q+A L +I R++ + LS E +KE P + L+ Sbjct: 174 DKVFLEVLSDQLAGLAAEIISRRLKYLAYLSEYAKEAYAAISNEKERLEVVYNPSVTLT- 232 Query: 229 TGFLDGK--FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 +G + + + K+ A ++ G TL GPHR DL DK + Sbjct: 233 SGQTSSESIYHEVLACFKKNEAGEIRTG--------TTLAGPHRDDLQF-LLDKKDAHLY 283 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S G+Q+ + + + LA +LI TG P LLLD++ + LD +++AL + +Q F Sbjct: 284 ASQGQQRTIALSLKLAEIQLIHQITGEYPTLLLDDVMSELDHTRQSALLNYIHG-KTQTF 342 Query: 347 MTGTD 351 +T TD Sbjct: 343 ITTTD 347 >gi|163938017|ref|YP_001642901.1| recombination protein F [Bacillus weihenstephanensis KBAB4] gi|229136318|ref|ZP_04265065.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST196] gi|226737772|sp|A9VM93|RECF_BACWK RecName: Full=DNA replication and repair protein recF gi|163860214|gb|ABY41273.1| DNA replication and repair protein RecF [Bacillus weihenstephanensis KBAB4] gi|228647190|gb|EEL03278.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST196] Length = 375 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/381 (23%), Positives = 169/381 (44%), Gaps = 26/381 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + ++G + SI LE + + ++N + + + + + + Sbjct: 63 -----WDEDYGNIKGRLQRRNSSISLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TL+GPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T SV Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVEG 349 Query: 357 SLNET---AKFMRISNHQALC 374 +ET AK + ++N C Sbjct: 350 IEHETLKEAKTIHVTNGTVDC 370 >gi|261854633|ref|YP_003261916.1| DNA replication and repair protein RecF [Halothiobacillus neapolitanus c2] gi|261835102|gb|ACX94869.1| DNA replication and repair protein RecF [Halothiobacillus neapolitanus c2] Length = 359 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 152/348 (43%), Gaps = 16/348 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VTRIG 68 L+I++FRN A + VGDNG GKT++LEAI +LS + FR ++ D + R Sbjct: 9 LSITQFRNLTMTDCPLSAGFNLLVGDNGAGKTSVLEAIYYLSTLKSFRTQTHNDLIARYP 68 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 R + D + LE D+ L++ + HL + L Sbjct: 69 DRDRGCAVVRAGVHQDDHDFFMALERCKDQFR--LRLGREEVPRASLFVAHLPVLALHAQ 126 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 D + RR+F+DRM F + F R+++ RN L G W + Sbjct: 127 SDDLVLAGPEFRRKFIDRMAFYLFADFVPAYAQFARMLKQRNAALRTGQSTEIW----DP 182 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 + G ++N RV ++ L + ++ V + P + + + F G +S L E A Sbjct: 183 LFIQYGERLNEQRVAALDLLKT-VLPQVFEALAPQLSVDMQ-FHPGH--KSGLDLSEALA 238 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + R+ D +TLIGP R+D++ D A + S G+ KV + LA A + Sbjct: 239 RN----RERDREMGQTLIGPQRADILFTLNDYAFK-SFASRGQIKVFTAALTLATAHIWQ 293 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 G +LL D+ + D +AL ++++G Q+F++ D+ D Sbjct: 294 AQRGKRAVLLFDDFMSEFDAHHSSALLHYLSNMGHQVFISAVDRQQID 341 >gi|189345561|ref|YP_001942090.1| DNA replication and repair protein RecF [Chlorobium limicola DSM 245] gi|259563358|sp|B3EDN1|RECF_CHLL2 RecName: Full=DNA replication and repair protein recF gi|189339708|gb|ACD89111.1| DNA replication and repair protein RecF [Chlorobium limicola DSM 245] Length = 363 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 165/359 (45%), Gaps = 22/359 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI+ + + +FRN+ +L + G NG GKT++LE I + + +GF A ++ Sbjct: 1 MKIEQIQLVQFRNHKNLSYGPAEGINLLYGPNGSGKTSVLEGIHYCALTKGFVTAYDSEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G SFF R + L + +K+ D + L +N + + + Sbjct: 61 LAFGE-SFFLINGRFIS-DALKEDGVKVVYSRDNGKK-LTVNGQDLTSFSQHIGSIPCIT 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSS 181 P+ + +G +ERRRFLD + D R+ + M+++ R++ RN LL E Sbjct: 118 FSPAEMSVINGSPVERRRFLDNAICQADCRYLQSMLNYRRVLLQRNALLLQLKERVQSIE 177 Query: 182 WCSSIEAQMAELGVKINIARV----EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + + Q++E I AR+ E++ L +++ KE P I + Sbjct: 178 MLNVLTEQLSEYAADIVFARLRFLDEILPGLKAILSSVSVKEE-PRIT-----YRSSLVP 231 Query: 238 QSFCALKEE---YAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + KEE Y ++ + +K D ++R T GPHR D IV + ++ + S G+Q+ Sbjct: 232 SVYALTKEELINYFREQYAKKKQDEIARGLTAGGPHRDD-IVFFLNQHEIKKYASQGQQR 290 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+ + +A S+ P+ L D++ + LD + LF ++ G Q+F+T T+K Sbjct: 291 SFLIAMKMALYGYFSDKLNEKPVCLFDDLFSELDRSRVEVLFALLASFG-QVFITATEK 348 >gi|88860614|ref|ZP_01135251.1| gap repair protein with nucleoside triP hydrolase domain [Pseudoalteromonas tunicata D2] gi|88817209|gb|EAR27027.1| gap repair protein with nucleoside triP hydrolase domain [Pseudoalteromonas tunicata D2] Length = 364 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 88/361 (24%), Positives = 161/361 (44%), Gaps = 15/361 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRN A L I G+NG GKT++LEAI +LS G+ FR Y + Sbjct: 1 MSLELVTVKNFRNLADLSFSPVDGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTIKYKTI 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + +F R++ + L + I D L+I V R + EL + + + Sbjct: 61 IQHHQDTFVIHAKKRIDQL--LLPVGISKNQAGDTE---LKIQGKVSRKIAELAELIPVQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182 + P +F G ERR+FLD +F ++ + F +L++ RN LL + + Sbjct: 116 LITPESYALFFGGPKERRKFLDFGLFHVEHHFFSLWLSFNKLLKQRNALLKQKPHNYHEQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + L ++IN R + S+ + + L+L L+ K++ + Sbjct: 176 IKYWDKEFVRLSLEINTLRKTYLERFRSVFFDKIAA------NLTLIVNLEIKYNSGWKD 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + E ++ L D T GPH++DL D + + S G+ K+++ + + Sbjct: 230 -EAELSELLIQSFTRDVKQGFTSFGPHKADLTFSVNDSLVE-NYFSRGQLKLLIYALKVT 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I T ILL+D++S+ L D R + +++ SQIF+T + ++ E Sbjct: 288 QNYIIEAETQKQSILLIDDLSSELSIDTRKDVGQLLAQCNSQIFITAIESESISAVLEPM 347 Query: 363 K 363 K Sbjct: 348 K 348 >gi|228924237|ref|ZP_04087508.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835455|gb|EEM80825.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 375 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 89/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ + G +I R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIDHGARILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351 Query: 355 FDSLNETAKFMRISNHQALC 374 ++L E AK + ++N C Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370 >gi|88813026|ref|ZP_01128268.1| recombination protein F [Nitrococcus mobilis Nb-231] gi|88789659|gb|EAR20784.1| recombination protein F [Nitrococcus mobilis Nb-231] Length = 357 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 157/353 (44%), Gaps = 34/353 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 + + FRN + L D + G+N GKT++LEAI +L+ GR F + R G Sbjct: 6 IEVEAFRNLRGVVLTPDPRVNFIWGNNASGKTSLLEAIHWLARGRSFLSVHSDQLIRQGC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + F+ A ++ + ++ T VRC N I + E I+WL+P+ Sbjct: 66 RA-FTLGASIQVPPRTTWLGME-RTPGRTRVRC---NGQDIWNLSE------IAWLLPTH 114 Query: 130 ------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 R+F G ERR LD VF ++ ++ R ++R +R RN L G DS Sbjct: 115 VINTESQRLFVGAPQERRSLLDWGVFHVEHSYQGRWRRYQRALRQRNAALRTG--DSQLA 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSFCA 242 + EA + ++ +R +NAL +++ E P ++L +D QS Sbjct: 173 RAWEADLVTAAEAVDSSRRCYLNALWPHWHAFIE-EWLPELEL--------HWDFQSGWP 223 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIF 300 +++ L R + TL GPHR DL I A + S G+QK+ + + Sbjct: 224 RRDDLRGVLAQARGRELERGHTLYGPHRGDLRFIAGDVGAAQRL---SRGQQKLAAIALR 280 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 LA A L P++L+D+++A LD R + + + +Q+ +T ++ Sbjct: 281 LAQAELTLKNGQQRPVILVDDLAAELDAGHRERVLAKLLRMDAQLLLTALSQN 333 >gi|225012738|ref|ZP_03703173.1| DNA replication and repair protein RecF [Flavobacteria bacterium MS024-2A] gi|225003271|gb|EEG41246.1| DNA replication and repair protein RecF [Flavobacteria bacterium MS024-2A] Length = 359 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 99/352 (28%), Positives = 167/352 (47%), Gaps = 24/352 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + ++ ++N S F+ + F+G+NGVGKTNIL+AI L+ G+ + + Sbjct: 3 LKQITLTNYKNITSKTFDFNPKINCFIGNNGVGKTNILDAIYHLAFGKSYFNPISIQNIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125 IG+ FF+ R E E I ++ +++ R +I D R+ D + L + + Sbjct: 63 IGT-DFFALEGRYETNEREEKIICSVKKGQKKTLKRNGKIYD---RIADHIG--LIPTVI 116 Query: 126 VPSMDR-IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + DR + S S RR+F+D ++ D R +I++ +++ RN LL YF + Sbjct: 117 ISPADRDLISEGSSTRRKFIDAVIGQTDAEFLRNLIEYNKILSQRNALLK--YF--ALNH 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQSFCA 242 + +A E+ + R + I+ L ME + P K D K D S+ + Sbjct: 173 TFDADTLEIYNEQLTTRGQPIHEKRKLFME----QFIPIFKERYHSISDKKETVDLSYDS 228 Query: 243 LKEEYAKKLF--DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + K+ + D M + T G H+ D+ + ++ I GS G+QK LV + Sbjct: 229 QLHTISHKILLEESLSKDRMIQHTTTGIHKDDIHLLKDEQPIK-KFGSQGQQKTFLVALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGT 350 LA + TG APILLLD+ LD+ + + + +V D G QIF+T T Sbjct: 288 LAQFDFLKAETGVAPILLLDDAFDKLDQQRVSQIISLVDQNDFG-QIFITDT 338 >gi|315125114|ref|YP_004067117.1| gap repair protein [Pseudoalteromonas sp. SM9913] gi|315013627|gb|ADT66965.1| gap repair protein [Pseudoalteromonas sp. SM9913] Length = 364 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 89/342 (26%), Positives = 153/342 (44%), Gaps = 25/342 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRN +L L I G+NG GKT++LEAI +LS G+ FR + + + Sbjct: 6 LSLKYFRNIEALTLEPVNGVNIIYGENGCGKTSLLEAIYYLSHGKSFRTSKHKSIIAHQQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLVPS 128 F + G + L D+SI + ++ L+I R V EL + + + + P Sbjct: 66 DQFV-----IHGRKALYDLSIPIGISKTQAGETNLKIQGKASRKVSELAQLMPVQIITPE 120 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDS--SWC 183 +F G ERR+FLD +F ++ F ++++ RN LL + YFD W Sbjct: 121 SYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKSKPKNYFDQIKFW- 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-A 242 + + L +IN R+ I + + E L ++ K +S C A Sbjct: 180 ---DKEFVRLAEQINKLRIAYITRFKQQFFDKMCAELTLIRDLEISFNAGWKESESLCDA 236 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L++ + + DS T GPH++D ++ S G+ K++L + + Sbjct: 237 LEQSFER--------DSRQGFTSKGPHKADFSFSVAGSSVENVF-SRGQLKLLLYALKVT 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 LI + T ILL+D++ + L ED + + +++T SQ Sbjct: 288 QNSLIESETDKQSILLIDDLPSELSEDTKEKVGQLLTHCSSQ 329 >gi|146280400|ref|YP_001170553.1| recombination protein F [Pseudomonas stutzeri A1501] gi|166220726|sp|A4VFG0|RECF_PSEU5 RecName: Full=DNA replication and repair protein recF gi|145568605|gb|ABP77711.1| DNA replication and repair protein RecF [Pseudomonas stutzeri A1501] Length = 370 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 160/356 (44%), Gaps = 22/356 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+++ RN + L + I GDNG GKT++LEAI L R FR V Sbjct: 1 MSLSRLSVTGVRNLHPVTLSPSPRINILFGDNGSGKTSLLEAIHLLGLARSFRSIRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRS--VRCLQINDVVIRVVDELNKHLR 121 P+ + F +VE L D S L DRS VR ++I+ +R EL L Sbjct: 61 ITYEQPAC-TVFGQVE----LPDQHSRALGVSRDRSGEVR-IRIDGQSVRSAAELADTLP 114 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + + P R+ G RR+FLD VF ++ R ++ +R RN L G DS+ Sbjct: 115 LQLINPDSFRLLEGAPKLRRQFLDWGVFHVEHRFMSAWQRLQQALRQRNSWLRHGTLDSA 174 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 ++ +++ +I+ R I AL + E K L+L+ + D+ Sbjct: 175 SDAAWSRELSLASDEIDGYRRAYIQALKP-VFETTLKALLDLDGLTLSYYRGWDKDR--- 230 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGI 299 L + A L R M T GP R+DL V + A + S G+QK+V+ + Sbjct: 231 PLVDVLASSLERDRAMG----HTQSGPQRADLRLKVGSHNAAEVL---SRGQQKLVVCAL 283 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 +A L+S I L+D++ + LD R AL R++ + Q+F+T D +V Sbjct: 284 RIAQGHLVSEAKRGQCIYLVDDLPSELDAQHRLALCRLLEQLNCQVFITCVDSTVL 339 >gi|255659818|ref|ZP_05405227.1| DNA replication and repair protein RecF [Mitsuokella multacida DSM 20544] gi|260847893|gb|EEX67900.1| DNA replication and repair protein RecF [Mitsuokella multacida DSM 20544] Length = 365 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 94/358 (26%), Positives = 157/358 (43%), Gaps = 18/358 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +RNY+ L L IF+G N GKTN++EA+ + S G R ++ R Sbjct: 3 VRSLKLRNYRNYSELELALQPGINIFLGPNAQGKTNVVEAVYYASLGHSHRTHLDTELIR 62 Query: 67 --IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 G F R M LE + R+ R + +N IR+ EL + Sbjct: 63 WDAGEGCIILDFDRRGVMN-------HLEFQFSRAKRRRILLNGHPIRL-KELIGSINTV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDS 180 P + G RRRFLD + P + +++F R++ RN LL E D Sbjct: 115 LFSPEDLFLIKGAPAGRRRFLDGEISQASPAYYHELVEFNRIISQRNSLLKRIRERRADK 174 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S + + Q+ KI R+E + L+ L ++ + L+++ + G D + Sbjct: 175 SMLALWDEQLIASAEKIIRKRIEAVRKLNMLANLMQRRISSDQENLTVSYEVHGGEDMT- 233 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGI 299 Y + L ++ D + T GPH DL++ I + GS G+Q+ ++ + Sbjct: 234 KGFASWYNEMLRKSQETDILRGSTSYGPHHDDLVLTV--NGINLRTFGSQGQQRTGVLSL 291 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 LA + + TG PILLLD++ + LD +R L + + Q +T TD + F + Sbjct: 292 KLAELEFLRSETGEYPILLLDDVMSELDVKRRQQLLQFIRRERIQTLITATDAAYFPA 349 >gi|212697385|ref|ZP_03305513.1| hypothetical protein ANHYDRO_01955 [Anaerococcus hydrogenalis DSM 7454] gi|212675577|gb|EEB35184.1| hypothetical protein ANHYDRO_01955 [Anaerococcus hydrogenalis DSM 7454] Length = 357 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/368 (24%), Positives = 167/368 (45%), Gaps = 37/368 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L +S+FRNY S + F+ IF+GDN GKTN+LE+I +L+ + F+ D+ Sbjct: 3 IQSLRLSKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDLIM 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + E ++ I++ + + + + +ND+ +L ++ Sbjct: 63 FNEKE-MALDGLIRKNESFKNVKIRV----NENKKEIFVNDIKYDKNKDLKSLFKLVLFT 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183 P I RR +D ++ +++ ++ DF++++ RN++L YF Sbjct: 118 PEDLTIIKDGPNFRRNLIDDIIISVNFSYKALKKDFDKVLSQRNKVLKNQRSKYFKEELM 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + Q+ L KI R + I SLI Y +K + + + K D S Sbjct: 178 -AFDQQIIRLNYKIYRYREKYI----SLINNYAKKNH--------SNLTENKEDLSIIYR 224 Query: 244 K-------EEYAKKLFDGRKMDSMSRRTLIGPHRS--DLIVDYCDKAITIAHGSTGEQKV 294 EEY +K + D RT G R D+I++ D + GS G+Q+ Sbjct: 225 PDIVAKDIEEYREKFSKNKSYDLKYYRTTAGIQRDEIDIIINGKD---SKKFGSQGQQRS 281 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFMTGTDKS 353 ++ I LA+ LI NT+ I+L D++ + LDE + N L + ++G Q +T T+ Sbjct: 282 AILNIKLANVNLIENTSQDKAIILFDDVFSELDEKRSNFL---LENLGRFQTIITATNTK 338 Query: 354 VFDSLNET 361 D ++++ Sbjct: 339 SLDRVDKS 346 >gi|254393576|ref|ZP_05008709.1| RecF [Streptomyces clavuligerus ATCC 27064] gi|294813743|ref|ZP_06772386.1| DNA replication and repair protein recF [Streptomyces clavuligerus ATCC 27064] gi|326442164|ref|ZP_08216898.1| recombination protein F [Streptomyces clavuligerus ATCC 27064] gi|197707196|gb|EDY53008.1| RecF [Streptomyces clavuligerus ATCC 27064] gi|294326342|gb|EFG07985.1| DNA replication and repair protein recF [Streptomyces clavuligerus ATCC 27064] Length = 381 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 161/364 (44%), Gaps = 29/364 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + + FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLGPGVSSFVGANGQGKTNLVEAVGYLATLASHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G+ A +G D S I+LE R+ R +R D L +R Sbjct: 61 VRAGAQRAVIRAAVTQG-----DRSQLIELELNPGRANRARINRSSQVRPRDALGI-VRT 114 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---- 178 P + G +RRRFLD ++ A PR D+ER+++ RN LL Sbjct: 115 VLFAPEDLALVKGDPGDRRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRH 174 Query: 179 -------DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP-HIKLS 227 D S + +A +G ++ R++++ L L E + P ++ Sbjct: 175 GGSRSGADLSTLDVWDQHLARVGAELLARRLDLVATLRPLADKAYESLAPGGGPLELEYR 234 Query: 228 LTGFLDGKFDQSFCALKEEYA---KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 + + +E Y + L + RK + TL+GPHR +L++ + Sbjct: 235 SSAGATAPPEDGAEGREELYGLLLEALGEARKQEIERGVTLVGPHRDELLLKLGELPAK- 293 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 + S GE + + LA L+ + G P+L+LD++ A LD +R L +V G Q Sbjct: 294 GYASHGESWSYALALRLASYELL-RSEGHEPVLVLDDVFAELDAKRRERLAELVAP-GEQ 351 Query: 345 IFMT 348 + +T Sbjct: 352 VLVT 355 >gi|160914816|ref|ZP_02077030.1| hypothetical protein EUBDOL_00823 [Eubacterium dolichum DSM 3991] gi|158433356|gb|EDP11645.1| hypothetical protein EUBDOL_00823 [Eubacterium dolichum DSM 3991] Length = 366 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/350 (22%), Positives = 158/350 (45%), Gaps = 7/350 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + ++RNY L++ I G N GKTN+LEAI +LS R R A D+ + G Sbjct: 6 LRLHDYRNYEDLQITLKNGIHILSGKNAQGKTNVLEAILYLSTTRSHRTACDEDLIKEGK 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +FF A +E ++ I + ++R + V +V D + + P Sbjct: 66 EAFFIK-AEIEKTNRKEELQISV---NERGKNLFMYKNPVSKVSDFIGE-FNAVMFCPDD 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 +F+ RRRF+D + + + + ++L++ RNR L + + + + + Q Sbjct: 121 MMLFNASPRVRRRFVDMELSKLSKTYVNTLFVAQKLLKERNRYLKQEHVNKEYLDVVTMQ 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + E + + R + L + ++ ++ + ++ + + + L++ + Sbjct: 181 LIEATMVVMKQRHHFLKQLLTKCAQFYKRLSNDGTQIEVIYESCVPYTEDEQLLRDRLTE 240 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 K R+ D R T +G H+ D I + + + S G+++ +L+ + + +I + Sbjct: 241 KYEKSRERDLAMRVTSVGIHKEDFIFQINGREVA-TYASQGQKRSILLALKVGMIYMIED 299 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 P+LLLD++ + LD D+R L + + QIF++ TD F L+ Sbjct: 300 IIHDYPVLLLDDVFSELDMDRRKELLHSLPN-EVQIFISTTDIEEFKHLD 348 >gi|108802860|ref|YP_642797.1| DNA replication and repair protein RecF [Rubrobacter xylanophilus DSM 9941] gi|108764103|gb|ABG02985.1| DNA replication and repair protein RecF [Rubrobacter xylanophilus DSM 9941] Length = 374 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 149/338 (44%), Gaps = 28/338 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + FRNYA + + VG+N GKTN+LEA++F+ G R + ++V R Sbjct: 5 IRAIRLVNFRNYAGATALLSPGLNVLVGENAQGKTNLLEALAFVVSGSSPRTPNDSEVVR 64 Query: 67 IGSPSFFSTFARV--EGME-----GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 G F ARV G E G A S K T D V L + V Sbjct: 65 WGE-GFVRVEARVVDGGHERRLAVGYAPGSRKRLTVDGAPVESLARYAAGVAGV------ 117 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEG 176 R P R+ G +RR FLD ++ ++ P + R ++ R ++ RN+LL +G Sbjct: 118 -RAVTFFPDDLRVVKGSPSDRRSFLDALLSSLRPAYARAAAEYARAVQQRNQLLRRIRDG 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 ++ + ++ ELG+ + R L E+F +L G Sbjct: 177 LSSERTLATWDRKVVELGLVLLEGRAAAAAPL---------DEHFRASMRALYGPQKAAV 227 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 S+ A E YA+ L + D T +GPHR DL + + +GS G+Q++ Sbjct: 228 GYSYSATPERYAQALREAHSADIERGITSVGPHRDDLRI-LLEGVDLTTYGSQGQQRLAT 286 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 + + A I + TG P+LL D++ + LDE +R+ L Sbjct: 287 LALKFAARDYIRDATGQDPVLLFDDVMSELDERRRDYL 324 >gi|206901870|ref|YP_002251259.1| DNA replication and repair protein RecF [Dictyoglomus thermophilum H-6-12] gi|206740973|gb|ACI20031.1| DNA replication and repair protein RecF [Dictyoglomus thermophilum H-6-12] Length = 359 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 164/363 (45%), Gaps = 44/363 (12%) Query: 10 LNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68 L + FRN +L L FD IF G+N GKTNILE+I FL G+ FR + ++ R G Sbjct: 6 LRVVNFRNLKNLNLNFFDV--NIFYGENAQGKTNILESIYFLFSGKSFRTKNEREIIRWG 63 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP- 127 SF+ + G + ++ LE+ + ++IN L ++ + +L P Sbjct: 64 EESFY-----LRGDVNWQNQNLVLESALSELEKKIKINQ------KNLKRYRDMVFLFPI 112 Query: 128 ---SMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S + I F +RR L+R + + ++ + + ++ + + RN L G S W Sbjct: 113 ILFSQEEIENFKKGPSQRRYLLNRFISTLSYKYHKALSEYYKTLYQRNLTLKSGRDVSVW 172 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQS 239 S+ + +LG I R+ ++ + S + E K +NF I+ T L Sbjct: 173 NST----LIKLGSYILFQRLSIVEEIKSKVKEVSNKLLEKNFLEIEYISTVPLGDS---- 224 Query: 240 FCALKEEYAKK----LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI---AHGSTGEQ 292 +EE AK L + TL+GPHR D+++ I +GS GE+ Sbjct: 225 ----EEEIAKNFEVMLKAKEAEEKKKGYTLVGPHRDDIVLRIIRDDIQYDLRKYGSAGEK 280 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 K+ + LA ++S PILL+D++ LDE K+ ++ + D QIF+T K Sbjct: 281 KLGYIIWKLAQVEILSEKRKEKPILLIDDLFGDLDEYKQKRVWDGIKDF--QIFLTTPIK 338 Query: 353 SVF 355 F Sbjct: 339 IEF 341 >gi|160872204|ref|ZP_02062336.1| DNA replication and repair protein RecF [Rickettsiella grylli] gi|159121003|gb|EDP46341.1| DNA replication and repair protein RecF [Rickettsiella grylli] Length = 363 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 102/367 (27%), Positives = 165/367 (44%), Gaps = 32/367 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-----RASYADV 64 L + FRN A L L F G NG GK+++LEAI FLS GR FR RA D Sbjct: 6 LKTNYFRNLAELDLEFSPHFNFIYGKNGSGKSSLLEAIYFLSLGRSFRSRLASRAIQYDA 65 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F+ F+ + G +I LE + N+ V EL K L + + Sbjct: 66 ER------FNLFSVLLGTSSTTMKTIGLEKIRQGKTKIKIDNNT--NPVSELAKLLPLQF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 + P+ + SG RR F+D VF ++P+ + ++ +++ RN L W Sbjct: 118 INPNSYLLLSGGPRARRGFIDWGVFHVEPQFFQIWQRYQHILKQRNAALQR---QVPWNQ 174 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFC 241 + + E +I R ++ L LI+E + K N + L D K + Sbjct: 175 IKIWDLALIEAADEITSFRENYLHQLVPLIIELINKLVNLQGLNLVFYQGWDKKLN---- 230 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIF 300 A L + D T GPHR+DL++ I++ S GEQK+++ + Sbjct: 231 -----LASILSGSLERDYKLLYTQFGPHRADLLLSL--NGISVHEILSRGEQKLLICALQ 283 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ + I L D++ + LD K+NAL +++ + +Q+F+T +K++ S+ E Sbjct: 284 LAQGLLLKKIAQKSCIYLFDDLFSELDPTKQNALMQLLNTLEAQVFITTIEKTLIKSV-E 342 Query: 361 TAKFMRI 367 T + +I Sbjct: 343 THRLGKI 349 >gi|257452988|ref|ZP_05618287.1| RECF protein [Fusobacterium sp. 3_1_5R] gi|317059528|ref|ZP_07924013.1| RECF protein [Fusobacterium sp. 3_1_5R] gi|313685204|gb|EFS22039.1| RECF protein [Fusobacterium sp. 3_1_5R] Length = 364 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/354 (20%), Positives = 167/354 (47%), Gaps = 17/354 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + ++ RN + ++ + +F G NG GKT+ILEAI F + G FR +++ Sbjct: 1 MKVLSIQLNHVRNLKNQEIIISSPIQVFYGKNGQGKTSILEAIYFAATGLSFRTKHSSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR----SVRCLQINDVVIRVVDELNKHL 120 R + + + +S+ +E + + Q+ E +L Sbjct: 61 IRYTKNTLSCSLGYQDQFSK-KSLSVSIENEKKQFFFLGKKISQM---------EFYGNL 110 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + + +P + +G RR F+DR + I+ + +++ F L++ RN+ L E + + Sbjct: 111 NVIYYIPEDVMLINGSPSVRRLFMDREISQINVFYLQQLKKFSHLLKIRNKYLKEKLYQN 170 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238 E + E G + R + +SS I Q + ++L F++ + D Sbjct: 171 EEFLIYEKEFVECGSYLIEQRNHYLQLMSSFIKNIYQNLFDKEKELQLQYKTFIEFQNDV 230 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++EE+ K++ ++ + +++GPH+ + I ++ + S GE+K ++ Sbjct: 231 TLSKIQEEFWKEIKKKKEKEIQYGFSMVGPHKDEFIF-LLERQDAKLYASQGEKKSIIFS 289 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ ++S PI+L+D+++++ DE++ ++ + + + Q+F+T T++ Sbjct: 290 LKLSEIDILSKNKKEMPIVLIDDVTSYFDEERCYSVLQYLYEKKVQVFITSTER 343 >gi|290473097|ref|YP_003465958.1| gap repair protein [Xenorhabdus bovienii SS-2004] gi|289172391|emb|CBJ79158.1| gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction [Xenorhabdus bovienii SS-2004] Length = 363 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 99/366 (27%), Positives = 159/366 (43%), Gaps = 23/366 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN A L VG NG GKT+ILEAI L GR FR V R Sbjct: 6 LLIRDFRNIADADLTLATGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSIQAGRVIRHDC 65 Query: 70 PSFFSTFARVEGM--EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F R+E E + + + D VR I+ + EL K L + + P Sbjct: 66 EEFI-LHGRLEQQFHERILAVGLSKNRLGDSKVR---IDGSDGHKIAELAKMLPMQLITP 121 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCS 184 + +G RR F+D F +PR ++ +RL++ RN R +T W Sbjct: 122 EGFTLLNGGPKYRRAFIDWGCFHNEPRFFTAWVNLKRLLKQRNAALRQVTRYGQIQHW-- 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R E I ++ I E K+ P LS++ F Q + + Sbjct: 180 --DRELAPLATEISQWRAEYIAGIAEDI-EKTCKQFLPEFTLSIS------FQQGWDK-E 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D S G+ K+++ + LA Sbjct: 230 SEYAELLARQFERDRTLTYTASGPHKADLRI-RVDGTPVEDMLSRGQLKLLMCALRLAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + +G + LLD+ ++ LD +R L + +Q+F++ T V D ++ ++ Sbjct: 289 EYFTRQSGQKCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAITPGQVTDMIDVNSR 348 Query: 364 FMRISN 369 R+ + Sbjct: 349 MFRVEH 354 >gi|228911332|ref|ZP_04075136.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL 200] gi|228848350|gb|EEM93200.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL 200] Length = 375 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/381 (23%), Positives = 169/381 (44%), Gaps = 26/381 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ISKIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F +++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ + G KI R E + L+ E+ +++ +D Sbjct: 178 LDVFTLQLIDHGAKILQKRFEFL----QLLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T SV Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVDG 349 Query: 357 SLNET---AKFMRISNHQALC 374 +ET AK + ++N C Sbjct: 350 IEHETLKDAKTIHVTNGTVDC 370 >gi|154250041|ref|YP_001410866.1| DNA replication and repair protein RecF [Fervidobacterium nodosum Rt17-B1] gi|154153977|gb|ABS61209.1| DNA replication and repair protein RecF [Fervidobacterium nodosum Rt17-B1] Length = 339 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 149/357 (41%), Gaps = 48/357 (13%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ I+ L + FR ++ + F + G NG GKT+ILEAI++LS R FR Sbjct: 5 RMLIESLRLRNFRCFSEYEVNFKDGINVIYGPNGAGKTSILEAIAYLSNPRSFRGGRDYH 64 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISI----------KLETRDDRSV-RCLQINDVVIRV 112 + + G+ +FF ++ DI++ K+ D V R I +V I + Sbjct: 65 LIKFGT-NFFEVSGKIVSGGKKHDITVIYKSDETKKEKIAYLDGNKVKRFRDIQEVFIAI 123 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 +L I G +RR F D + +D + + ++E+L+ RN L Sbjct: 124 PFSFKDYLMI-----------DGYPSQRREFFDEIFSLLDLEYYEILRNYEKLLDERNAL 172 Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 L E D + +M L KI R MIN LS +L Sbjct: 173 LAEENVDREKVLKLANEMQPLAEKIVEKREIMINELSK--------------------YL 212 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 D F + + E K + D D R T +GPH D V Y + I S G++ Sbjct: 213 DPMFKVEYVS--EFKGKNIADYIDEDIEKRVTTVGPHTHDDYVFYYNGYIAKYFASEGQK 270 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 +++ + + +A +LI T + P+ L D+ LD + L + ++++ Q+ + G Sbjct: 271 RLLYLSLIIAFKKLIEETKLYEPVFLFDDPGNVLDP---HLLEKFISNLSGQVIIAG 324 >gi|330806660|ref|YP_004351122.1| DNA replication and repair protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374768|gb|AEA66118.1| DNA replication and repair protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 357 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 147/327 (44%), Gaps = 16/327 (4%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEG-LADIS 89 I G NG GKT++LEA+ L R FR V + + + F +VE EG + + Sbjct: 17 ILYGANGSGKTSVLEAVHLLGLARSFRSTRLLPVIQYDQLAC-TVFGQVELAEGGHSALG 75 Query: 90 IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149 I +RD + ++I+ R +L + L + + P R+ G RR+FLD VF Sbjct: 76 I---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPDSFRLLEGAPKIRRQFLDWGVF 132 Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209 ++PR ++ +R RN L G D+ + + ++ + +I+ R I AL Sbjct: 133 HVEPRFMTTWQRLQKALRQRNSWLRHGTLDAVSQAVWDRELCQASAEIDEYRRAYIKALK 192 Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 + E E L+L+ + D+ E + L + D T GP Sbjct: 193 P-VFEQTLSELVELEGLTLSYYRGWDKDR-------ELSTVLAGSLQRDQQMGHTQAGPQ 244 Query: 270 RSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 R+DL + A I S G+QK+V+ + +A L+S I L+D++ + LDE Sbjct: 245 RADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLVSQARRGQCIYLVDDLPSELDE 302 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVF 355 R AL R++ D+ Q+F+T D + Sbjct: 303 AHRRALCRLLEDLRCQVFITCVDHELL 329 >gi|42518088|ref|NP_964018.1| recombination protein F [Lactobacillus johnsonii NCC 533] gi|51316301|sp|Q74M31|RECF_LACJO RecName: Full=DNA replication and repair protein recF gi|41582372|gb|AAS07984.1| DNA replication and repair protein RecF [Lactobacillus johnsonii NCC 533] gi|329666395|gb|AEB92343.1| recombination protein F [Lactobacillus johnsonii DPC 6026] Length = 374 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 160/356 (44%), Gaps = 32/356 (8%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +FRN+ L++ FD IF+G N GKTN+LEAI FL+ R R S ++ R G Sbjct: 8 LKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 S FA ++G + + ++L+ R + + +N + + + + P Sbjct: 65 --SKFAGLQGKVHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAILFSPEDLA 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + G RRRF+D I+ + + + ++++ RN L + D + + Sbjct: 123 LVKGAPSIRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDLVFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTGFLDGKFD 237 Q+A + +I R++ I L+S E +Q P +K +T D + Sbjct: 183 DQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVK-EITP--DDDVE 239 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVV 295 + + Y K R + TL GPHR DL DK AH S G+Q+ + Sbjct: 240 TIYQKVITSYKK----NRPNEIRKGTTLSGPHRDDLDFLINDKN---AHDFASQGQQRTI 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + LA +L+ T PILLLD++ + LD ++++L + +Q F+T TD Sbjct: 293 SLSVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSSLLNYIHG-KTQTFITTTD 347 >gi|241895510|ref|ZP_04782806.1| recombination protein F [Weissella paramesenteroides ATCC 33313] gi|241871256|gb|EER75007.1| recombination protein F [Weissella paramesenteroides ATCC 33313] Length = 383 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 21/349 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L ++ FRNY SL + F + +F+G N GKTN+LEAI L+ R R ++ ++ Sbjct: 6 LKLNNFRNYESLDVSFSSGVNVFLGPNAQGKTNLLEAIYVLALTRSHRTSTDKELI---- 61 Query: 70 PSFFSTFARVEGM--EGLADISIKLE-TRDDRSVRCLQINDV-VIRVVDELNKHLRISWL 125 S+ + A+V G +D+ + L+ T + R +N + + +LN + Sbjct: 62 -SWQAKEAQVAGTVARQYSDVPLSLKFTNKGKKARINHLNQAKLANYIGQLN----VILF 116 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSS 181 P + G RR F+DR + ++ ++ +++ RNR L ++ D Sbjct: 117 APEDLDLVKGAPSVRRNFIDREFSQMSAKYLYTANQYKEVLKQRNRYLKQLQSKQASDKL 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQS 239 + + Q+ ++ RV +I L + +N + + L+ + + Sbjct: 177 YLDVLTEQLVNFASELITRRVTLIKKLDAAAQPIQAAITQNNEQLHIQYVSQLNNESLAN 236 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++K+ + R+ + + TL+GPHR DL D + + GS G+Q+ + + Sbjct: 237 IESVKQAMLSRFKQLREREIIMGTTLLGPHRDDLRFDVNEHDVA-NFGSQGQQRTTALAV 295 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 LA L+ TG P+LLLD++ + LD D++ L + D Q F+T Sbjct: 296 KLAEIDLMKEETGEYPVLLLDDVLSELDSDRQTHLLAAMQD-KVQTFIT 343 >gi|330890247|gb|EGH22908.1| recombination protein F [Pseudomonas syringae pv. mori str. 301020] Length = 368 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 89/328 (27%), Positives = 157/328 (47%), Gaps = 22/328 (6%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE-GMEGLADI 88 I G NG GKT++LEAI L R FR + V + PS + F +V+ G +++ Sbjct: 27 NILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQPSC-TVFGQVDLAQGGHSNL 85 Query: 89 SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148 + +RD + ++I+ R +L + L + + P R+ G RR+FLD V Sbjct: 86 GV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPDSFRLLEGAPKIRRQFLDWGV 142 Query: 149 FAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 F ++PR M+ ++RL ++ RN L G D++ ++ + ++ +I+ R I Sbjct: 143 FHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAAWDRELCSASDEIDEFRRAYI 199 Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 AL + E E L+L+ + +D+ ++E + L D T Sbjct: 200 KALKP-VFEQTLGELVELEGLTLSYYRG--WDK-----EKELSTVLASSLHRDQQMGHTQ 251 Query: 266 IGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 GP R+DL + A I S G+QK+V+ + +A L+S I L+D++ + Sbjct: 252 AGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLVSQVRRGQCIYLVDDLPS 309 Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDK 352 LD++ R AL R++ ++ Q+F+T D+ Sbjct: 310 ELDDNHRRALCRLLEELRCQVFITCVDQ 337 >gi|311070651|ref|YP_003975574.1| recombination protein F [Bacillus atrophaeus 1942] gi|310871168|gb|ADP34643.1| recombination protein F [Bacillus atrophaeus 1942] Length = 370 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/371 (22%), Positives = 162/371 (43%), Gaps = 16/371 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ +RNY + L F+ + + +G+N GKTN++EAI LS + R ++ ++ R Sbjct: 3 IQNLELTSYRNYERVELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG + SI ++ + + ++N + + + L Sbjct: 63 -----WDKDYAKIEGRVMKQNGSIPMQLVISKKGKKGKVNHIEQQKLSRYVGALNTIMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P + G RRRFLD + + P + + +++++ RN L + D + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILTQRNHFLKQLQSRKQTDQTM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E K+ + R++ L + L L+ + Sbjct: 178 LDVLTEQLIETAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYQTALEVSDPEDL 237 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + Y + R+ + TL GPHR D++ Y + +GS G+Q+ + + Sbjct: 238 SKIGDSYQRAFSKLREKEIERGVTLSGPHRDDVLF-YVNGRDVQTYGSQGQQRTTALSLK 296 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD--SL 358 LA LI G PILLLD++ + LD+ +++ L + Q F+T T D +L Sbjct: 297 LAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHETL 355 Query: 359 NETAKFMRISN 369 ++ F R+ N Sbjct: 356 HQAGMF-RVQN 365 >gi|289649102|ref|ZP_06480445.1| recombination protein F [Pseudomonas syringae pv. aesculi str. 2250] Length = 367 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 165/348 (47%), Gaps = 22/348 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 PS + F +V+ G +++ + +RD + ++I+ R +L + L + + P Sbjct: 66 PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185 R+ G RR+FLD VF ++PR M+ ++RL ++ RN L D++ ++ Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHDTLDAASQAA 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ +I+ R I AL + E E L+L+ + +D+ ++ Sbjct: 179 WDRELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L D T GP R+DL + A I S G+QK+V+ + +A Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336 >gi|229014659|ref|ZP_04171773.1| DNA replication and repair protein recF [Bacillus mycoides DSM 2048] gi|229065152|ref|ZP_04200445.1| DNA replication and repair protein recF [Bacillus cereus AH603] gi|229170196|ref|ZP_04297882.1| DNA replication and repair protein recF [Bacillus cereus AH621] gi|228613297|gb|EEK70436.1| DNA replication and repair protein recF [Bacillus cereus AH621] gi|228716181|gb|EEL67900.1| DNA replication and repair protein recF [Bacillus cereus AH603] gi|228746670|gb|EEL96559.1| DNA replication and repair protein recF [Bacillus mycoides DSM 2048] Length = 375 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 90/381 (23%), Positives = 169/381 (44%), Gaps = 26/381 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 ITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + ++G + S+ LE + + ++N + + + + + + Sbjct: 63 -----WDEDYGNIKGRLQRRNSSVSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182 P + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236 Q+ E G KI R E ++ L+ E+ +++ +D Sbjct: 178 LDVFTLQLIEHGAKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +KE Y + ++ + TL+GPHR DL K + + GS G+Q+ Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T SV Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVEG 349 Query: 357 SLNET---AKFMRISNHQALC 374 +ET AK + ++N C Sbjct: 350 IEHETLKEAKTIHVTNGTVDC 370 >gi|311112569|ref|YP_003983791.1| recombination protein F [Rothia dentocariosa ATCC 17931] gi|310944063|gb|ADP40357.1| recombination protein F [Rothia dentocariosa ATCC 17931] Length = 403 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 96/378 (25%), Positives = 161/378 (42%), Gaps = 54/378 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ ++R Y L L A T+F+G NGVGKTNI+EAI + + R + + R Sbjct: 3 LDHLSLLDYRTYPLLNLPLSAGVTVFLGPNGVGKTNIIEAIDYTANLSSHRVSHDGPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 +G+ + RV + G + E S R +IN E R Sbjct: 63 VGA---SRAYIRVRTVRGSQQTVTEFEIAPGASNRV-RINRAAPVRAREALGITRTVLFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-------TEGYFD 179 P ++ G RRRF+D + ++ P ++ER++R RN LL + D Sbjct: 119 PEDLQLVKGEPAGRRRFIDDLAVSLRPVVSGYRQEYERILRQRNSLLKTLQRRGSSAVDD 178 Query: 180 SSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + +++ Q+ +LG ++ AR ++ L PH++ + G DG Sbjct: 179 ENAMHTLDVWSEQLTQLGAQLLAARFRVLWLL------------LPHLRRAYAGLTDGSK 226 Query: 237 DQSFCA-----------------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 D SF +K+ A++L + R + TL+GPHR D+ Sbjct: 227 DISFTYDSTVFPEITERGLEHVSRMSIDDIKDAMAQRLRERRTAELERGVTLVGPHRDDI 286 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAH---ARLISNTTGFAPILLLDEISAHLDEDK 330 + A+ S GE V + + LA R + G +PIL+LD++ A LD ++ Sbjct: 287 TLLLGGLAVK-QFASHGESWSVALSLRLASWFVHRADDESPGSSPILILDDVFAELDSER 345 Query: 331 RNALFRIVTDIGSQIFMT 348 R+ L +V Q+ +T Sbjct: 346 RHRLGALVAQ-AEQVLLT 362 >gi|253987486|ref|YP_003038842.1| recombination protein F [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253778936|emb|CAQ82096.1| dna replication and repair protein recf [Photorhabdus asymbiotica] Length = 363 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 98/363 (26%), Positives = 155/363 (42%), Gaps = 17/363 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN A L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LFIRDFRNIADADLPLATGFNFLVGPNGSGKTSVLEAIYTLGHGRSFRSIQSGRVIRHNC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F R+E E + SI L D VR I+ + EL K L + + P Sbjct: 66 DEFV-LHGRLEQRENARESSIGLSKNRNGDSKVR---IDGSDGGKIAELAKMLPMQLITP 121 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 + +G RR F+D F DPR ++ +RL++ RN L + S + Sbjct: 122 EGFTLLNGGPKYRRAFIDWGCFHNDPRFFSAWVNLKRLLKQRNAALRQ-VTHYSQIRPWD 180 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 ++A L +IN R E + + I + K+ P L + F Q + + +Y Sbjct: 181 QELAPLANQINQWRTEYVTNIIQGIADTC-KQFLPEFILRFS------FQQGWDK-ESDY 232 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 A+ L + D T GPH++DL + + S G+ K+++ + LA Sbjct: 233 AELLERQFERDRALTYTASGPHKADLRIRVEGTPVEDML-SRGQLKLLMCALRLAQGEYF 291 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366 + G + LLD+ ++ LD +R L + +Q+F++ + V D L+ ++ R Sbjct: 292 TRQNGQQCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAISPGQVTDMLDGNSRMFR 351 Query: 367 ISN 369 + N Sbjct: 352 VEN 354 >gi|228471347|ref|ZP_04056148.1| RecF protein [Porphyromonas uenonis 60-3] gi|228306848|gb|EEK15961.1| RecF protein [Porphyromonas uenonis 60-3] Length = 372 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 98/362 (27%), Positives = 159/362 (43%), Gaps = 33/362 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ F+N A+ F + F G NG+GKTN+L+AI +LS RG + R G+ Sbjct: 6 LSVINFKNVATANCHFAPKLNCFFGGNGMGKTNLLDAIHYLSVVRGHLGTTDRYAIRHGA 65 Query: 70 PSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 A ++G +G D I L +RS + + + R D + ++ + + Sbjct: 66 QE-----AIIQGEYLWDDGQED-KISLRISAERSKQLSRNGRLYKRHSDHIGRY-PLVII 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P R+ G S ERRR +DR++ D + +I++ R + RN +L + + Sbjct: 119 SPHDQRLIRGGSDERRRSVDRILSQQDATYLANLINYNRALDQRNNMLRNQIHEPALMDI 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSFCA 242 +E +A G+ + R + L F I L ++ F + Sbjct: 179 LEETLATTGLAVTTMRQAYVEELVP---------TFDQIYQHLAAGVERAVLSFSAGSAS 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSD---LIVDYCDKAITIAHGSTGEQKVVLVGI 299 EE + L +GR+ D T G HR D L+ + + I GS G+ K L+ Sbjct: 230 TAEEQLRILRNGRQRDYEYGFTATGCHRDDFEMLLGENLMRKI----GSEGQNKTYLIAY 285 Query: 300 FLAHARLISN--TTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFD 356 LA R + T AP+LLLD+I LD D+ + +V TD QIF+T T++ D Sbjct: 286 KLAEYRYLQQHLTNQTAPLLLLDDIFDKLDSDRVERIIELVATDTFGQIFITDTNRKYLD 345 Query: 357 SL 358 + Sbjct: 346 EI 347 >gi|327478615|gb|AEA81925.1| recombination protein F [Pseudomonas stutzeri DSM 4166] Length = 370 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 101/356 (28%), Positives = 159/356 (44%), Gaps = 22/356 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+++ RN + L + I GDNG GKT++LEAI L R FR V Sbjct: 1 MSLSRLSVTGVRNLHPVTLTPSPRINILFGDNGSGKTSLLEAIHLLGLARSFRSIRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRS--VRCLQINDVVIRVVDELNKHLR 121 P+ + F +VE L D S L DRS VR ++I+ +R EL L Sbjct: 61 ITYEQPAC-TVFGQVE----LPDQHSRALGVSRDRSGEVR-IRIDGQSVRSAAELADTLP 114 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + + P R+ G RR+FLD VF ++ R ++ +R RN L G D + Sbjct: 115 LQLINPDSFRLLEGAPKLRRQFLDWGVFHVEHRFMSAWQRLQQALRQRNSWLRHGTLDGA 174 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 ++ +++ +I+ R I AL + E K L+L+ + D+ Sbjct: 175 SDAAWSRELSLASDEIDGYRRAYIQALKP-VFETTLKALLDMDGLTLSYYRGWDKDR--- 230 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGI 299 L + A L R M T GP R+DL V + A + S G+QK+V+ + Sbjct: 231 PLVDVLASSLERDRAMG----HTQSGPQRADLRLKVGSHNAAEVL---SRGQQKLVVCAL 283 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 +A L+S I L+D++ + LD R AL R++ + Q+F+T D +V Sbjct: 284 RIAQGHLVSEAKRGQCIYLVDDLPSELDAQHRLALCRLLEQLNCQVFITCVDSTVL 339 >gi|310817865|ref|YP_003950223.1| DNA replication and repair protein RecF [Stigmatella aurantiaca DW4/3-1] gi|309390937|gb|ADO68396.1| DNA replication and repair protein RecF [Stigmatella aurantiaca DW4/3-1] Length = 481 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 94/360 (26%), Positives = 164/360 (45%), Gaps = 21/360 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L FRN + L TI VG NG GKTN+LEA+ FL+ + R A++ Sbjct: 1 MRLLALQAQNFRNLHQVSLAPSPHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + ARV G L ++ VR ++ ++E + + Sbjct: 61 VRWG-----TKGARVSGRFLLKGAEREISVEVGGGVRQAFVDGKKASSLEEYFGGVAVVA 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 P + G RR FLDR VF P + D+ R ++ RNRLL +G ++++ Sbjct: 116 FTPDDLEVVKGGPEARRTFLDRAVFNRFPAFLKESRDYARALKNRNRLLRDGPAAEAAYL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT----GFLDGKFDQS 239 + + +A G ++ + R ++ L+ + F I ++ G+ Q Sbjct: 176 DAYDETLARAGARVYVRRRALMAELAPRA-----QATFASIGRTVDPAAYGYHPAHLAQE 230 Query: 240 FCALKE----EYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 F + E + + GR+ + R T +GPH D+ V ++ A+ S G+Q+ Sbjct: 231 FAEVDEVRLADALLEALAGRRRRDLERGFTSVGPHVDDVAVTLGGRSAR-AYASQGQQRA 289 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 +++G +A + GF P+LLLD++S+ LD ++ L + G+Q+F+T TD S+ Sbjct: 290 LVLGWKIAEIENLHAALGFLPLLLLDDVSSELDPERNAYLMGYLAASGAQVFLTTTDASL 349 >gi|261403880|ref|YP_003240121.1| DNA replication and repair protein RecF [Paenibacillus sp. Y412MC10] gi|261280343|gb|ACX62314.1| DNA replication and repair protein RecF [Paenibacillus sp. Y412MC10] Length = 370 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 94/360 (26%), Positives = 157/360 (43%), Gaps = 18/360 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ +RNY L+L + +G N GKTN++EA+ L+ + R + D Sbjct: 3 VKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSK--DREL 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 IG F + A + +++LE + + +IN + R + + L + Sbjct: 61 IG---FEQSSAHISAEIDRKYGTLRLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P I G RRRFLD + + P + + +++++ RN LL + G + + Sbjct: 118 PEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSTEQAM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLS-LTGFLDGKFDQS 239 +Q+AE GVKI R + I L Q + L L F D + ++ Sbjct: 178 LEIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAE-EED 236 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + KL ++ + TL GPHR DL Y + +GS G+Q+ + + Sbjct: 237 EAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAF-YINGKEVQTYGSQGQQRTTALSL 295 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA LI G P+LLLD++ + LD ++ L Q F+T T +SLN Sbjct: 296 KLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQS-KVQTFITATG---IESLN 351 >gi|218961815|ref|YP_001741590.1| putative putative DNA repair and genetic recombination (recF-like) [Candidatus Cloacamonas acidaminovorans] gi|167730472|emb|CAO81384.1| putative putative DNA repair and genetic recombination (recF-like) [Candidatus Cloacamonas acidaminovorans] Length = 358 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 153/335 (45%), Gaps = 42/335 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 + + FR+Y F+ Q + +G NG GKTN+LEAI++ S G+ R ++ G Sbjct: 6 IELENFRSYRQNEFDFNPQGCLIIGPNGCGKTNLLEAIAYCSIGKSIRFHHDEELLNFG- 64 Query: 70 PSFFSTFARVEGM---EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F RV+ + + + L D + L+I+++ IR + L + +++ + Sbjct: 65 ----GQFFRVQSLFISDQQTPKKVSLSYADQH--KLLKIDELPIRQLSSLFEVVKVIYCA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SSWC 183 P + SG RR++ D + + P + + F +++ RN +L Y +SW Sbjct: 119 PEDHLLISGSPRFRRQYFDLAISQLYPPYINVLRHFLHIVQQRNAMLKRNYSRAEITSWN 178 Query: 184 SSIEAQMAELG-------VKINIARVE----MINALSSLIMEYVQKENFPHIKLSLTGFL 232 S + +AE+ ++N A E + A +++ + Y+ P +KL L Sbjct: 179 LSFASSLAEVWNYRNRYLKQVNTAFQETFKDIFPASTAISLAYI-----PSLKLPLE--- 230 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + EE K L + + + +R+L+G H D + + + + S G++ Sbjct: 231 ---------SSPEEIIKHLATIEEREKLLQRSLVGAHLDDYEFKLKGRKM-LTYASQGQK 280 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 ++ ++ + L ARLI TG PI+L D+I A LD Sbjct: 281 RIAVIILKLIQARLIEKVTGIKPIMLFDDIFAELD 315 >gi|326335178|ref|ZP_08201375.1| recombination protein F [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692708|gb|EGD34650.1| recombination protein F [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 378 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 104/361 (28%), Positives = 168/361 (46%), Gaps = 38/361 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I F+N + F + VG+NGVGKTN L+AI LS + SY + T Sbjct: 22 LKQLYILNFKNIENKEFSFSPKLNCLVGNNGVGKTNSLDAIYHLSMTK-----SYFNTTT 76 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHL- 120 + + F +EG + + E R + V ++ I +V ++L++H+ Sbjct: 77 LYNIRLGEDFYLIEG-------NFQKEDRQEHIVCSVKRGQKKILKRNGKVYEKLSEHIG 129 Query: 121 --RISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174 I + PS D I G S RRRFLD M+ I P + ++ + +++ RN LL Sbjct: 130 AFPIVIVSPSDRDLIHEG-SETRRRFLDSMLSQIQPHYLEDLLHYNKILSQRNSLLKIMA 188 Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFL 232 + YFD + Q++ G KI R +A + + Y Q++ + +LS + Sbjct: 189 EKQYFDDITLDIYDEQLSLYGEKIFQER----SAFLTSFLPYFQEQ---YKRLSQGRETV 241 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 D ++ S K + K + D + + T +G H+ DLI ++ + GS G+Q Sbjct: 242 DIHYESSLKKEKLKTLLK--RSIEQDRIVQYTTVGIHKDDLIFSINNQPVK-KFGSQGQQ 298 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD 351 K L+ + LA I T PILLLD+I LD + L +VT+ Q+F++ TD Sbjct: 299 KSFLIALKLAQFHSIYKQTSVTPILLLDDIFDKLDAQRVTQLIHLVTEAPFGQVFISDTD 358 Query: 352 K 352 K Sbjct: 359 K 359 >gi|301629590|ref|XP_002943921.1| PREDICTED: DNA replication and repair protein recF-like [Xenopus (Silurana) tropicalis] Length = 367 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 14/347 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + + I G NG GKT++LEAI L R FR A V + Sbjct: 6 VSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPVIQYEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + + F +VE EG S+ + +RD + ++I+ R +L + L + + P Sbjct: 66 LAC-TVFGQVELAEG-GHSSLGI-SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPDS 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 R+ G RR+FLD VF ++PR ++ +R RN L G D++ ++ + + Sbjct: 123 FRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQAAWDRE 182 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + +I+ R I AL + E E L+L+ + D+ A+ Sbjct: 183 LCLASAEIDEYRRAYIKALKP-VFEQTLSELLELEGLTLSYYRGWDKDRELSAV------ 235 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L + D T GP R+DL + A I S G+QK+V+ + +A L+S Sbjct: 236 -LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLVS 292 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 I L+D++ + LDE R AL R++ D+ Q+F+T D + Sbjct: 293 QARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELL 339 >gi|118587496|ref|ZP_01544921.1| DNA repair protein RecF [Oenococcus oeni ATCC BAA-1163] gi|118432146|gb|EAV38887.1| DNA repair protein RecF [Oenococcus oeni ATCC BAA-1163] Length = 373 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/356 (25%), Positives = 156/356 (43%), Gaps = 29/356 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRNY SL++ F + +GDN GKTN+LEAI LS R R + D+ S Sbjct: 6 LKLKDFRNYKSLQVDFSNSINVLIGDNAQGKTNLLEAIYILSMARSHRDNNDRDLINWSS 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F V+ G LE R ++ + + +N + + + +L P Sbjct: 66 -DFSDITGEVQSKMG----KFPLEVRITKTGKKVFVNHLTENRLSDYIGNLHTVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-------TEGYFDSSW 182 + G RR+F+D + + ++ + +++ RN L D + Sbjct: 121 LDLVKGSPGVRRKFIDSEFGQMSANYLFNLLQYRSVLKNRNAYLKNIKWIGNNPKIDEDY 180 Query: 183 CSSIEAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q+ + G +I R ++ L S I + + + IK + +D DQS Sbjct: 181 LKVLNDQLIDFGSEIIFQRFVLVKELEKYSYQIHKAISRNEKLTIKYASFSGID---DQS 237 Query: 240 FCALKEEYAKKLFDGRKMDSMSRR-----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 KEE + K+F+ + + + +R T +GPH DL K + + S G+Q+ Sbjct: 238 ---TKEEIS-KIFNNQLLKNKTRELFLKSTSVGPHHDDLKFSINGKEVG-SFASQGQQRT 292 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + LA ++ TG PILLLD++ + LD D++ L + D Q F+T T Sbjct: 293 TALSVRLAEIEMMKYETGEYPILLLDDVLSELDGDRQTQLLNFIQD-KVQTFLTTT 347 >gi|227113114|ref|ZP_03826770.1| recombination protein F [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|253686412|ref|YP_003015602.1| DNA replication and repair protein RecF [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259563667|sp|C6DGH9|RECF_PECCP RecName: Full=DNA replication and repair protein recF gi|251752990|gb|ACT11066.1| DNA replication and repair protein RecF [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 361 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 159/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F R++G E + + + D VR I+ V EL + L I + P Sbjct: 66 PEFV-LHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F +P + +RL+R RN L + ++ +W Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFAAWSNMKRLLRQRNAALRQVSHYGQLRAW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R + A+++ I + P LS + F G +S E Sbjct: 178 DQELVPLAERISEWRAQYSAAIANDIATTC-TQFLPEFSLSFS-FQRGWDKES------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D M T +GPH++D + A+ S G+ K+++ + LA Sbjct: 230 YAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ G + L+D+ ++ LD +R L + +Q+F++ + + + D + E K Sbjct: 289 LTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMVGEKGKMF 348 Query: 366 RISN 369 R+ Sbjct: 349 RVEQ 352 >gi|329925052|ref|ZP_08279996.1| DNA replication and repair protein RecF [Paenibacillus sp. HGF5] gi|328940171|gb|EGG36503.1| DNA replication and repair protein RecF [Paenibacillus sp. HGF5] Length = 370 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 94/360 (26%), Positives = 157/360 (43%), Gaps = 18/360 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ +RNY L+L + +G N GKTN++EA+ L+ + R + D Sbjct: 3 VKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSK--DREL 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 IG F + A + +++LE + + +IN + R + + L + Sbjct: 61 IG---FEQSSAHISAEIDRKYGTLRLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P I G RRRFLD + + P + + +++++ RN LL + G + + Sbjct: 118 PEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSAEQAM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLS-LTGFLDGKFDQS 239 +Q+AE GVKI R + I L Q + L L F D + ++ Sbjct: 178 LEIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAE-EED 236 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E + KL ++ + TL GPHR DL Y + +GS G+Q+ + + Sbjct: 237 EAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAF-YINGKEVQTYGSQGQQRTTALSL 295 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA LI G P+LLLD++ + LD ++ L Q F+T T +SLN Sbjct: 296 KLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQS-KVQTFITATG---IESLN 351 >gi|24371610|ref|NP_715652.1| DNA replication and repair protein RecF [Shewanella oneidensis MR-1] gi|51316466|sp|Q8EKT0|RECF_SHEON RecName: Full=DNA replication and repair protein recF gi|24345360|gb|AAN53097.1|AE015452_10 DNA replication and repair protein RecF [Shewanella oneidensis MR-1] Length = 360 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 166/368 (45%), Gaps = 37/368 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LNI FRN +L + G NG GKT+ILEAI FL GR FR V Sbjct: 6 LNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-ND 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + G + I ++ + V+ I+ ++ + L + L I + P S Sbjct: 65 QDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------YFDSS 181 +F G RR+F+D F DP+ ++ R+++ RN++L G Y+D Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGSPYDQIQYWDRE 180 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQS 239 + E Q+ E+ R +++L+ L+ + E P +K+S T D K D Sbjct: 181 FIRYTE-QVTEI-------RNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDSKTD-- 229 Query: 240 FCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 F L E +Y + L G T+ GPH++DL + A S G+ K+++ Sbjct: 230 FAQLLESQYPRDLATG--------HTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCA 280 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357 + +A +L+ I L+D++ + LD R L + + D G+Q+F+T + ++ DS Sbjct: 281 LRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDS 340 Query: 358 LNETAKFM 365 L+ M Sbjct: 341 LHTPPSRM 348 >gi|221632725|ref|YP_002521946.1| DNA replication and repair protein recF [Thermomicrobium roseum DSM 5159] gi|254790496|sp|B9KZ04|RECF_THERP RecName: Full=DNA replication and repair protein recF gi|221155632|gb|ACM04759.1| DNA replication and repair protein recF [Thermomicrobium roseum DSM 5159] Length = 396 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 93/389 (23%), Positives = 170/389 (43%), Gaps = 52/389 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA------S 60 ++ L + EFR + L LV + VG NG GKT+++EA+ L+ + FR + Sbjct: 3 VRSLELEEFRCFRHLHLVLPDRGLRLVGANGSGKTSLIEALYMLATTKSFRASLERHLVH 62 Query: 61 YADVTRIGSPSFF------------STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 + + +G P + ST V ++ + KL RD RS+R + Sbjct: 63 RSSGSELGIPPYARLAAELFTETERSTLEIVLMVDPASGTVRKLYRRDGRSLRAV----- 117 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 E LR+ P + +G +RRR+LD ++ ID + R + + R++ Sbjct: 118 ------EFVGTLRVVLFSPEDLELVTGSPQQRRRYLDTILSTIDRAYLRALARYTRILEH 171 Query: 169 RNRLLT-----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 RN LL + + + Q+ G + +AR+ + + ++ Q + Sbjct: 172 RNSLLKSLAERDQRAADEQLAYWDEQLVTYGAYLLVARLRFLAEWGPRLRDHFQALDT-Q 230 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR--------------KMDSMSR-RTLIGP 268 ++ T +L D L E A+++ D + + D + R TL+GP Sbjct: 231 AQVLTTAYLPS-IDLPESLLSELAAREVADAQLIVGARYRETLERLRPDELRRGSTLVGP 289 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR D+ ++ +T A GS G Q++ ++ LA +I T P+LLLD+ + LD+ Sbjct: 290 HRDDVEFLLGEEPLT-AFGSRGVQRLAVIAAKLAEIAVIHRVTDDWPVLLLDDALSELDQ 348 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 R L ++ + +Q+ +T T+ V ++ Sbjct: 349 QHRAHLLATLSALPAQLILTATESDVLET 377 >gi|159035678|ref|YP_001534931.1| recombination protein F [Salinispora arenicola CNS-205] gi|189039637|sp|A8LVH1|RECF_SALAI RecName: Full=DNA replication and repair protein recF gi|157914513|gb|ABV95940.1| DNA replication and repair protein RecF [Salinispora arenicola CNS-205] Length = 376 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 160/363 (44%), Gaps = 36/363 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y + + + + VG NGVGKTN++EA+ +++ R A+ A + R Sbjct: 3 VRRLELVDFRSYERVGVDLEPGANVLVGHNGVGKTNLIEALGYVATLDSHRVATDAPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+ + A V EG E + I+LE R+ R R D L LR+ Sbjct: 63 MGAGAAVIRCAVVHEGRE----LLIELEIVPGRANRARLGRSPARRARDVLGA-LRLVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178 P + G ERRR+LD ++ PR+ D+ER++R RN LL Y Sbjct: 118 APEDLELVRGDPAERRRYLDDLLVLRQPRYAGVRADYERVVRQRNALLRTAYLARKTGGT 177 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----------PHIK 225 D S + + +A G ++ R++++ AL+ + P ++ Sbjct: 178 RGGDLSTLAVWDDHLARHGAELLAGRLDLVAALAPHVTRAYDAVAAGTGAAGIAYRPSVE 237 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 L L + L GR + TL+GPHR DL + Sbjct: 238 LPTP-------TTDRADLTAALSAALAAGRSAEIERGTTLVGPHRDDLTLTLGPLPAK-G 289 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 + S GE + + + LA L+ G P+L+LD++ A LD +R+ L ++V D SQ+ Sbjct: 290 YASHGESWSLALALRLAGYDLL-RVDGIEPVLVLDDVFAELDTGRRDRLAQLVGD-ASQL 347 Query: 346 FMT 348 +T Sbjct: 348 LVT 350 >gi|291571835|dbj|BAI94107.1| DNA replication and repair protein RecF [Arthrospira platensis NIES-39] Length = 379 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 180/368 (48%), Gaps = 30/368 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ +FRNY + + FDA TI VG+N GK+N+LEA+ LS + R D+ Sbjct: 3 LKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDLV- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + + A +E D+++ L ++ R+V IN ++ +HL ++ Sbjct: 62 LDNHAIAQITATLERDSSTLDLALTLRSQGRRTV---AINGQSVK------RHLDFLSIL 112 Query: 127 -----PSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 S+D + G ERR +LDR++ ++P + + + +++R RN LL G Sbjct: 113 NVVQFSSLDLELVRGGPAERRHWLDRLLIQLEPVYAYMLDQYNQVLRQRNALLRRGPMGG 172 Query: 181 SWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD---- 233 + + +AQ+A G ++ R +I L L + Q + L++T + Sbjct: 173 TTPEELAVWDAQLAVTGARVLRRRDRVIERLEPLARMWHQSISGSRETLNITYQPNIEPP 232 Query: 234 GKFDQSFCALKEEYAKKLF----DGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGS 288 K Q + E ++ F R + S+ TL+GPHR D+I ++ +GS Sbjct: 233 CKPQQRWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFT-INQTPARQYGS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 +G+Q+ +++ + LA +LI + G P+LLLD++ A LD ++N L + +++ Q +T Sbjct: 292 SGQQRTLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLIT 350 Query: 349 GTDKSVFD 356 T FD Sbjct: 351 TTHLGAFD 358 >gi|111020658|ref|YP_703630.1| recombination protein F [Rhodococcus jostii RHA1] gi|123340329|sp|Q0SAG4|RECF_RHOSR RecName: Full=DNA replication and repair protein recF gi|110820188|gb|ABG95472.1| DNA replication and repair protein [Rhodococcus jostii RHA1] Length = 410 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 100/387 (25%), Positives = 174/387 (44%), Gaps = 42/387 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FR++ +L L T+FVG NG GKTN+LEA+ +LS R +S A + R Sbjct: 3 VRALSLRDFRSWDALGLTLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ F+ V ++++ LE + +S R +IN R E+ L+ Sbjct: 63 TGTGQAFAGATVVNAGR---ELTVDLELNEGKSNRA-RINQSPTRRPREILGILQTVLFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------------ 174 P + G +RRR+LD ++ + PR D++R++R R+ LL Sbjct: 119 PEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDRVLRQRSALLKTAGGALRRVSRG 178 Query: 175 EGYFDSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFP--- 222 G S++ + +A G ++ R+ +++ L+ + E Q E+ P Sbjct: 179 SGRPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPASI 238 Query: 223 HIKLSLTGFLDGKFDQS--------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274 + SL L +F + L+E + ++L R + L+GPHR DL Sbjct: 239 RYRSSLGSSLPPEFTEPARVPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDDLE 298 Query: 275 VDYCDKAITIAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 + D T A G S GE + + LA L+ + G P+L+LD++ A LD +R Sbjct: 299 LHLGD---TPAKGFASHGESWSFALSLRLAGFALL-RSDGSDPVLMLDDVFAELDRRRRR 354 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLN 359 AL ++ D + + V + L+ Sbjct: 355 ALAKVALDAEQVLITAAVPEDVPEELD 381 >gi|50123357|ref|YP_052524.1| recombination protein F [Pectobacterium atrosepticum SCRI1043] gi|81693014|sp|Q6CYR6|RECF_ERWCT RecName: Full=DNA replication and repair protein recF gi|49613883|emb|CAG77335.1| DNA replication and repair protein [Pectobacterium atrosepticum SCRI1043] Length = 361 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 158/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F R++G E + + + D VR I+ V EL + L I + P Sbjct: 66 PEFV-LHGRIDGTETERAVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F +P + +RL R RN L + ++ +W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFAAWSNMKRLQRQRNAALRQVSHYGQLRAW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R + A+++ I + P LS + F G +S E Sbjct: 178 DQELVPLAERISEWRAQYSAAIANDIAATC-TQFLPEFSLSFS-FQRGWDKES------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D M T +GPH++D + A+ S G+ K+++ + LA Sbjct: 230 YAELLERQFERDRMLGYTALGPHKADFRIRTSGVAVEDML-SRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ G + L+D+ ++ LD +R L + +Q+F++ + + + D + E K Sbjct: 289 LTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGKMF 348 Query: 366 RISN 369 R+ Sbjct: 349 RVEQ 352 >gi|117918470|ref|YP_867662.1| recombination protein F [Shewanella sp. ANA-3] gi|166221866|sp|A0KR37|RECF_SHESA RecName: Full=DNA replication and repair protein recF gi|117610802|gb|ABK46256.1| DNA replication and repair protein RecF [Shewanella sp. ANA-3] Length = 360 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 99/362 (27%), Positives = 165/362 (45%), Gaps = 37/362 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LNI FRN +L + + G NG GKT+ILEAI FL GR FR V Sbjct: 6 LNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-NE 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + G + I ++ + V+ I+ ++ + L + L I + P S Sbjct: 65 QDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------YFDSS 181 +F G RR+F+D F DP+ ++ R+++ RN+LL Y+D Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRNNSSYDQIQYWDRE 180 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQS 239 + E Q+ E+ R +++L+ L+ + E P +K+S T D K D Sbjct: 181 FVRYTE-QVTEI-------RNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDSKTD-- 229 Query: 240 FCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 F L E +Y + L G T+ GPH++DL + A S G+ K+++ Sbjct: 230 FAQLLESQYPRDLATG--------HTVSGPHKADLRLRVGSLPAQDAM-SRGQLKLLVCA 280 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357 + +A +L+ I L+D++ + LD R L + + D G+Q+F+T + ++ DS Sbjct: 281 LRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDS 340 Query: 358 LN 359 L+ Sbjct: 341 LH 342 >gi|114045516|ref|YP_736066.1| recombination protein F [Shewanella sp. MR-7] gi|123131882|sp|Q0I0U6|RECF_SHESR RecName: Full=DNA replication and repair protein recF gi|113886958|gb|ABI41009.1| DNA replication and repair protein RecF [Shewanella sp. MR-7] Length = 360 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 166/368 (45%), Gaps = 37/368 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LNI FRN +L + + G NG GKT+ILEAI FL GR FR V Sbjct: 6 LNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-NE 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + G + I ++ + V+ I+ ++ + L + L I + P S Sbjct: 65 QDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------YFDSS 181 +F G RR+F+D F DP+ ++ R+++ RN+LL Y+D Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRNNSSYEQIQYWDRE 180 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQS 239 + E Q+ E+ R +++L+ L+ + E P +K+S T D K D Sbjct: 181 FVRYTE-QVTEI-------RNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDSKTD-- 229 Query: 240 FCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 F L E +Y + L G T+ GPH++DL + A S G+ K+++ Sbjct: 230 FAQLLESQYPRDLATG--------HTVSGPHKADLRLRVGSLPAQDAL-SRGQLKLLVCA 280 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357 + +A +L+ I L+D++ + LD R L + + D G+Q+F+T + ++ DS Sbjct: 281 LRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDS 340 Query: 358 LNETAKFM 365 L+ M Sbjct: 341 LHTPPSRM 348 >gi|328675921|gb|AEB28596.1| DNA recombination and repair protein RecF [Francisella cf. novicida 3523] Length = 349 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 87/356 (24%), Positives = 160/356 (44%), Gaps = 15/356 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN F VG NG GKT+ILE+I FLS R FR + + + Sbjct: 6 LRLQNFRNIPFKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIVNHNA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F + + + +I+I L +R S ++N + + E+ ++L I + P Sbjct: 66 DEFI-IYTKAYNPD---EITISL-SRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPES 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 I + + +R + LD F +D + + L++ RN L + Y ++ SI+ + Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNY-PYNYILSIDKK 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 ++E ++ R L + E + + N P +KL + F ++ + EE Sbjct: 180 LSEFAEILDHKRQAYFTKLKPKVYEILAEFN-PELKLDIEYFRGWNSHKNLYQVLEE--- 235 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 D+ + T GPH++D+++ K I S G+QK+++ I LA + + Sbjct: 236 ----SFNYDNKYKITNHGPHKADIVLSVNHKPIQDIF-SRGQQKLLICAIKLAQGEIHNL 290 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 I L+D+I++ LD LF + + SQ+F+T T+K+ + +T ++ Sbjct: 291 ENYNKCIYLIDDITSELDNTHTQTLFNYLRQLKSQVFITTTEKNKINEFIDTNSYI 346 >gi|254930864|ref|ZP_05264223.1| recombination protein F [Listeria monocytogenes HPB2262] gi|293582409|gb|EFF94441.1| recombination protein F [Listeria monocytogenes HPB2262] gi|328476148|gb|EGF46854.1| recombination protein F [Listeria monocytogenes 220] gi|332310338|gb|EGJ23433.1| DNA replication and repair protein recF [Listeria monocytogenes str. Scott A] Length = 370 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 162/371 (43%), Gaps = 48/371 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG S+ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 A++ + + R + I L + + + + LK EY Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228 Query: 251 L-FDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + +G +K++S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 ITLNGDDPEVWKADLLQKIESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + I LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFDSLNETAK 363 S D +ET K Sbjct: 347 SGID--HETLK 355 >gi|121998015|ref|YP_001002802.1| DNA replication and repair protein RecF [Halorhodospira halophila SL1] gi|121589420|gb|ABM62000.1| DNA replication and repair protein RecF [Halorhodospira halophila SL1] Length = 349 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN A +L + G NG GKT++LEAI FLS R FR + + IG Sbjct: 4 LEVHGFRNLADTQLRPHPHLNVVTGPNGAGKTSLLEAIYFLSRVRSFR--TRQNDRLIGW 61 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + + V G + L TR L++N L L + + Sbjct: 62 GAEEARVVAVRGHDRLGAARTPGHTR-------LRLNGADAHTRSALAARLPVQLMNTEH 114 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSIE 187 R+ RR+FLD F ++P +R ++ +R RN L G + +W Sbjct: 115 QRLLLDGPRVRRQFLDWGTFHLEPDYRELAQRYQHALRQRNAALRVGDRRSEQAWTPV-- 172 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 + +++AR I AL + E+ ++ L L L+ ++ + A + + Sbjct: 173 --LIRCAAAVDVARQRFIEALRPIWSEFARQ------WLGLES-LELRYYRG-AAAELPW 222 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 + L + + D + T GPHR+DLI+ D+ S G+QK+++V + +A +L Sbjct: 223 ERVLDEQLERDRTAGFTHRGPHRADLILSR-DRIPAADALSRGQQKLLVVALLIAEVKLW 281 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 S G P+LL+D++ A LD + + VT +Q+F+T D + + Sbjct: 282 SR-QGLTPVLLIDDLPAELDPAHLHTVLDTVTGDPTQVFLTAIDGAALPT 330 >gi|113968349|ref|YP_732142.1| recombination protein F [Shewanella sp. MR-4] gi|123325558|sp|Q0HPD2|RECF_SHESM RecName: Full=DNA replication and repair protein recF gi|113883033|gb|ABI37085.1| DNA replication and repair protein RecF [Shewanella sp. MR-4] Length = 360 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 166/368 (45%), Gaps = 37/368 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LNI FRN +L + + G NG GKT+ILEAI FL GR FR V Sbjct: 6 LNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-NE 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + G + I ++ + V+ I+ ++ + L + L I + P S Sbjct: 65 QDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------YFDSS 181 +F G RR+F+D F DP+ ++ R+++ RN+LL Y+D Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRNNSSYDQIQYWDRE 180 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQS 239 + E Q+ E+ R +++L+ L+ + E P +K+S T D K D Sbjct: 181 FVRYTE-QVTEI-------RNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDSKTD-- 229 Query: 240 FCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 F L E +Y + L G T+ GPH++DL + A S G+ K+++ Sbjct: 230 FAQLLESQYPRDLATG--------HTVSGPHKADLRLRVGSLPAQDAL-SRGQLKLLVCA 280 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357 + +A +L+ I L+D++ + LD R L + + D G+Q+F+T + ++ DS Sbjct: 281 LRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDS 340 Query: 358 LNETAKFM 365 L+ M Sbjct: 341 LHTPPSRM 348 >gi|312878755|ref|ZP_07738555.1| DNA replication and repair protein RecF [Aminomonas paucivorans DSM 12260] gi|310782046|gb|EFQ22444.1| DNA replication and repair protein RecF [Aminomonas paucivorans DSM 12260] Length = 352 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 89/350 (25%), Positives = 158/350 (45%), Gaps = 24/350 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ + L + +RN + + + +G NG GKTN+LEA+ L+ F + V Sbjct: 1 MRFRDLEVHRYRNLEDREITWSPGINVLLGPNGAGKTNLLEAMDLLAGWGPFGDRPASVV 60 Query: 65 TRIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 GS + R+EG E +A + ++ T L+ +R ++ L + Sbjct: 61 PWEGSGDTW-VRGRLEGEETAVASVQVRGRT-------LLRWGGSPVRAT-QMRTSLPVL 111 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 +P + G + +RRR LD++ + P + R+ D+ R +R R L G D Sbjct: 112 AFLPDSLSVVEGSASQRRRLLDQVGALVYPPYALRLHDYRRALRQRTACLRRGERDDL-- 169 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGFLDGKFDQSFCA 242 + +A LGV + AR ++ L+S + + P ++ G G +++ Sbjct: 170 --VLRVLAPLGVWLWRAREDVARRLASRLEGVGPLLSAPLELRYHRGG---GGWEEDS-- 222 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFL 301 KE++ + L R + +SR L+GP R DL+ + I A S G ++ V + L Sbjct: 223 -KEDFRRGLLRHRDRERLSRTPLVGPQRDDLV--FLSGKIPAAERFSRGHRRRAAVALML 279 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 A A ++ + P+LLLDE++A LD + + LF + G Q+F D Sbjct: 280 ASAGVVRDALRRDPVLLLDEVTAELDGEGKGILFSSLEATGWQVFAATAD 329 >gi|229587581|ref|YP_002869700.1| recombination protein F [Pseudomonas fluorescens SBW25] gi|259563668|sp|C3KDU4|RECF_PSEFS RecName: Full=DNA replication and repair protein recF gi|229359447|emb|CAY46288.1| DNA replication and repair protein RecF [Pseudomonas fluorescens SBW25] Length = 367 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 14/347 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++++ RN + + I G NG GKT++LEAI L R FR A V + Sbjct: 6 VSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPVIQYEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + + F +VE EG S+ + +RD ++I+ R +L + L + + P Sbjct: 66 LAC-TVFGQVELAEG-GHSSLGI-SRDRGGEFQIRIDGQNARSAAQLAEILPLQLINPDS 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 R+ G RR+FLD VF ++PR ++ +R RN L G D++ ++ + + Sbjct: 123 FRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQAAWDRE 182 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + +I+ R I AL + E E L+L+ + ++ A+ Sbjct: 183 LCLASDEIDEYRRAYIKALKP-VFEQTLSELLDLEGLTLSYYRGWDKERELSAV------ 235 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L + D T GP R+DL + A I S G+QK+V+ + +A L+S Sbjct: 236 -LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLVS 292 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 I L+D++ + LDE R AL R++ ++ Q+F+T D + Sbjct: 293 QARRGQCIYLVDDLPSELDEQHRRALCRLLEELRCQVFITCVDHELL 339 >gi|83588879|ref|YP_428888.1| DNA replication and repair protein RecF [Moorella thermoacetica ATCC 39073] gi|97180817|sp|Q2RMJ4|RECF_MOOTA RecName: Full=DNA replication and repair protein recF gi|83571793|gb|ABC18345.1| DNA replication and repair protein RecF [Moorella thermoacetica ATCC 39073] Length = 370 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 27/360 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FR+Y L I G N GKTN+LEAI +L+ R FR+ + Sbjct: 4 LSLQQLQLINFRSYKCLTWDCRPGLNIIFGPNAAGKTNLLEAIGYLALARSFRQQQDQQL 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ SF +V G+ I+L + + L IN R++ EL + + Sbjct: 64 LTWGASSF-----QVRGLCHSNGEKIELVINYQQHNKRLTINGNRNRLI-ELLGIFPVIY 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSS 181 P + G RR FLDR + D + R + D+ R++ RN LL G Sbjct: 118 FGPDDLHLLKGGPAYRRHFLDREISMGDRLYCRNLQDYRRILFQRNLLLRAIKAGRGKEG 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK----FD 237 + Q+ G I R + +L+ P + + G+ Sbjct: 178 ELEPWDIQLLATGKAICEKRSCFLQSLA------------PRVAATYRDMAGGEELALIY 225 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + A +EE+A++L GR+ + + TL GPHR D D S G+Q+ +++ Sbjct: 226 RPGVASQEEWAERLKVGREREVQAGMTLWGPHRDDFTFT-LDGHEARYFASQGQQRAIVL 284 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA AR P+LLLD++ + LDE + AL ++ Q F+T T+ + + Sbjct: 285 ALKLAEARYYRELLHVMPVLLLDDVFSELDEAHQGALLELLAG-ADQAFLTTTEVGLLPA 343 >gi|315286765|ref|ZP_07872179.1| DNA replication and repair protein RecF [Listeria ivanovii FSL F6-596] gi|313630894|gb|EFR98586.1| DNA replication and repair protein RecF [Listeria ivanovii FSL F6-596] Length = 372 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 158/364 (43%), Gaps = 46/364 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEAI L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAILMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG ++ LE + + +IN + + + + +L + P + Sbjct: 66 EEAKMEGRIVKRGQTVPLELTITQKGKRAKINHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNKYLKMLQLKRKVDPILLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA-- 248 A++ + + R + I L + + + + LK EY Sbjct: 186 ADVAINLTKRRADFIRKLE-----------------AYAAPIHNQISRGLETLKIEYKAS 228 Query: 249 -------KKLFDG---RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 K++ +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 VTLTGDDPKVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + I LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFD 356 S D Sbjct: 347 SGID 350 >gi|238855509|ref|ZP_04645814.1| DNA replication and repair protein RecF [Lactobacillus jensenii 269-3] gi|282931535|ref|ZP_06337034.1| DNA replication and repair protein RecF [Lactobacillus jensenii 208-1] gi|238831875|gb|EEQ24207.1| DNA replication and repair protein RecF [Lactobacillus jensenii 269-3] gi|281304342|gb|EFA96445.1| DNA replication and repair protein RecF [Lactobacillus jensenii 208-1] Length = 374 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 34/362 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + +RN+ L F IF+G N GKTN+LEA+ FL+ R R S ++ R Sbjct: 3 LKQLKLQNWRNFEELETGFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + A + G + + L+ R + + IN + + L Sbjct: 63 FGQKA-----AILSGHVVKSQVETDLQVRINAKGKKAWINRIEQSKLSRYVGQLTAILFS 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P + G RRRF+D I+P + + ++++ +N L + D + Sbjct: 118 PEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDKVF 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI-------------MEYVQKENFPHIKLSLT 229 + Q+A L +I R++ + LS +E V + P +T Sbjct: 178 LEVLSDQLAGLAAEIISRRLKYLTYLSEYAKKAYAAISNEKEQLEVVYNPSVPLTSEQIT 237 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + + + K+ A ++ G TL GPHR DL DK + S Sbjct: 238 S--ESIYHEVLACFKKNEAGEIRTG--------TTLSGPHRDDLKF-LLDKKDAHLYASQ 286 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ + + + LA +LI TG P LLLD++ + LD +++AL + +Q F+T Sbjct: 287 GQQRTIALSLKLAEIQLIHQITGEYPALLLDDVMSELDHTRQSALLNYIHG-KTQTFITT 345 Query: 350 TD 351 TD Sbjct: 346 TD 347 >gi|296268002|ref|YP_003650634.1| DNA replication and repair protein RecF [Thermobispora bispora DSM 43833] gi|296090789|gb|ADG86741.1| DNA replication and repair protein RecF [Thermobispora bispora DSM 43833] Length = 401 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 104/395 (26%), Positives = 166/395 (42%), Gaps = 53/395 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++++FR+YA + L + + F+G NG GKTN++EA+ +++ R A+ A + R Sbjct: 3 VASLSLTDFRSYAGVELELEPGVSAFIGANGQGKTNLVEALGYVATHTSHRVATDAPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ A V +G L I+LE R+ R ++ R D L LR Sbjct: 63 HGAQRAIVRAAVVRDGRRAL----IELEINPGRANRARVNRALMPRPRDALGL-LRTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------- 174 P + G ERRR+LD ++ A PR D+ER++R RN LL Sbjct: 118 APEDIALVKGDPAERRRYLDELLIARAPRFAGVRADYERVLRQRNALLRSAAAARSGRRG 177 Query: 175 ------EGYFDSSWCSSI-------EAQMAELGVKINIARVEMINALSSLI--------- 212 E F + + +A + G ++ AR+E+++AL SL Sbjct: 178 ARRAEDEAAFAAIGAGDVLATLDVWDAHLVRHGAELTAARMELVDALRSLTAKAYAALAP 237 Query: 213 ------MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TL 265 +EY TG G + A E+ + + + R TL Sbjct: 238 SSGAVDLEYRSAAVDAAAAAPSTGGPGGGDRREAVA---EWLRAALAQARQAELERGVTL 294 Query: 266 IGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 +GPHR DL++ K + + S GE + + LA L+ G P+L+LD++ A Sbjct: 295 VGPHRDDLLLTL--KGMPARGYASHGEAWSFALALRLAAYELL-RADGGDPVLILDDVFA 351 Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LD D+R L IV + V D L+ Sbjct: 352 ELDHDRRRRLAEIVAPAEQVLITAAVPDDVPDELS 386 >gi|261819373|ref|YP_003257479.1| recombination protein F [Pectobacterium wasabiae WPP163] gi|261603386|gb|ACX85872.1| DNA replication and repair protein RecF [Pectobacterium wasabiae WPP163] Length = 361 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 157/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F R++G E + + + D VR I+ V EL + L I + P Sbjct: 66 PEFV-LHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F +P + +RL+R RN L + ++ +W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHHEPGFLAAWSNMKRLLRQRNAALRQVSHYGQLRAW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R + ++S I + P LS + F G +S E Sbjct: 178 DQELVPLAERISEWRAQYSAGIASDIAATC-TQFLPEFSLSFS-FQRGWDKES------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D M T +GPH++D + A+ S G+ K+++ + L Sbjct: 230 YAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLVQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ G + L+D+ ++ LD +R L + +Q+F++ + + + D + E K Sbjct: 289 LTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGKMF 348 Query: 366 RISN 369 R+ Sbjct: 349 RVEQ 352 >gi|119947310|ref|YP_944990.1| DNA replication and repair protein RecF [Psychromonas ingrahamii 37] gi|166220727|sp|A1T0X6|RECF_PSYIN RecName: Full=DNA replication and repair protein recF gi|119865914|gb|ABM05391.1| DNA replication and repair protein RecF [Psychromonas ingrahamii 37] Length = 359 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 93/349 (26%), Positives = 153/349 (43%), Gaps = 37/349 (10%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I +FRN S L F+ + + VG NG GKT +LEAI FL GR FR + V S S Sbjct: 8 IHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRVVEHESKS 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F+ F+ ++ G I ++ + L+IN + + L ++L + + P Sbjct: 68 -FTLFSEIQNNNGSIPIGLQ---KSKSGETLLKINGSYCKKLANLTQYLPLQLITPEGYT 123 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI----- 186 + SG RR FLD VF DP +RL++ RN L + C + Sbjct: 124 LLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQRNAALKQ-------CKTYNELQI 176 Query: 187 -EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQSFCAL 243 + ++ L +I+ R A L+M P +K +L FL Q FC Sbjct: 177 WDNELCILSEEISQQR----EAYFELLM--------PLVKQTLADFLPDFSITSQFFCGW 224 Query: 244 ---KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGI 299 + LFD D T GP ++DL + I ++ S G+ K+ + + Sbjct: 225 DKNNKSLQDYLFDNFYRDKQIGYTSAGPQKADL--RFKINGIPVSDVLSRGQLKLFVYAL 282 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 LA +++ + L+D+ S+ LD++K+ L + + + +QIF++ Sbjct: 283 RLAQGLFLNSFDNKQCVFLIDDFSSELDQNKQQILAKHIINSNAQIFIS 331 >gi|56961786|ref|YP_173508.1| recombination protein F [Bacillus clausii KSM-K16] gi|81679102|sp|Q5WM28|RECF_BACSK RecName: Full=DNA replication and repair protein recF gi|56908020|dbj|BAD62547.1| DNA replication and repair protein RecF [Bacillus clausii KSM-K16] Length = 372 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 157/360 (43%), Gaps = 21/360 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +S +RNY+ +VF + +FVG+N GKTN+LEAI ++ + R ++ Sbjct: 3 IHTLELSSYRNYSKTAVVFGEKINVFVGENAQGKTNLLEAIYVVALAKSHRTQKDKEMIG 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P F A+ E G ++ I L + + +IN + R + + L + Sbjct: 63 FEEP-FARIHAKAEKRTGEVELDIILSAKGKKG----KINGLEQRRLSDYVGTLNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-------TEGYFD 179 P + G RRRF+D + I P + + + ++++ RN LL ++ Y Sbjct: 118 PEDLDLVKGSPQVRRRFIDMELGQISPVYLNSLSLYGKILKQRNVLLKNMQQKRSQNY-- 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFD 237 + + Q+ + + R E I+ L Q + LS ++ Sbjct: 176 -AMVDVLTEQLIDKAAFVMKKRAEFISRLEEWATPIHQSISRGKEMLTLSYIPSIEVSDI 234 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVL 296 ++ +KE+ K R+ + TL GPHR D V + + + ++GS G+Q+ Sbjct: 235 ENMSKIKEDLYKAYETKRETEVRRGTTLFGPHRDD--VSFSVNGLDVQSYGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA LI G PILLLD++ + LD +++ L + Q F+T T S D Sbjct: 293 LSVKLAEIDLIYAEIGDYPILLLDDVLSELDNYRQSHLLEAI-QARVQTFVTTTSTSGLD 351 >gi|310639475|ref|YP_003944233.1| DNA replication and repair protein recf [Paenibacillus polymyxa SC2] gi|309244425|gb|ADO53992.1| DNA replication and repair protein recF [Paenibacillus polymyxa SC2] Length = 371 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 89/347 (25%), Positives = 149/347 (42%), Gaps = 16/347 (4%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + ++RNY L L + +G N GKTN++EAI L+ + R + ++ G+ S Sbjct: 8 LQQYRNYEQLELNEFGPVNLLIGQNAQGKTNLVEAIFVLALTKSHRTSRDKELISFGATS 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 A V+ G + + L T+ ++ +IN + R + + L + P Sbjct: 68 THLA-ADVDKKYGKIRLDLSLSTQGKKA----KINGLEQRKLSDFIGSLNVVMFAPEDLE 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI----- 186 I G RRRFLD + + P + + +++++ RN LL + + + Sbjct: 123 IVKGTPGVRRRFLDMEIGQVAPGYLYHLQQYQKVLVQRNNLLKQAWGKDMASVQLMLEVW 182 Query: 187 EAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 Q+ E GVKI R + I L + I E + +KL+ ++ L Sbjct: 183 NEQLVEHGVKIVKKRKQFITKLQKWAQAIHEGIAG-GTEELKLTYVPSFGEPEEEDEAVL 241 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + KL R+ + TL GPHR DL + + +GS G+Q+ + + LA Sbjct: 242 LERFMIKLSQMREQEIRRGMTLAGPHRDDLAFAINGREVH-TYGSQGQQRTTALSLKLAE 300 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LI G PILLLD++ + LD ++ L Q F+T T Sbjct: 301 IELIHEEIGEYPILLLDDVLSELDPYRQTQLIETFQS-KVQTFITAT 346 >gi|83642920|ref|YP_431355.1| recombinational DNA repair ATPase (RecF pathway) [Hahella chejuensis KCTC 2396] gi|97180764|sp|Q2SQZ4|RECF_HAHCH RecName: Full=DNA replication and repair protein recF gi|83630963|gb|ABC26930.1| Recombinational DNA repair ATPase (RecF pathway) [Hahella chejuensis KCTC 2396] Length = 375 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 92/355 (25%), Positives = 162/355 (45%), Gaps = 23/355 (6%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--YAD 63 +I F N+ RN +SL+L A+ +F G+NG GK+++LE + L G FR YA Sbjct: 5 RIAFTNL---RNISSLKLDTSARLLLFHGNNGSGKSSLLEGVYLLGRGASFRTKELDYA- 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 V+ + F + I + + + ++IN R + EL L I Sbjct: 61 VSHLSDE--MVCFGEAVNEDAGKSFRIGVSRQKTGKLTRVRINGESARTLSELAAALPIL 118 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P +G ERRRF+D VF ++ + + ++ +L+ RN+LL G S Sbjct: 119 IVTPDTFGFINGGPGERRRFVDWGVFHVEHQFKVVWQNWRKLLLQRNKLLKSGNISRSEL 178 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFC 241 S+ + Q +I+ R L +++E +++ E I LT L + Q+ Sbjct: 179 SAWDNQYVAYSDEISRYRDAYFAELKEILIESLKESSEQTRDIGDKLTITLSNGWYQNDV 238 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG----STGEQKVVLV 297 ++ A + + D T +GPHR+D+ V + H S G+QK ++ Sbjct: 239 NHMDQLASSV----ESDVKKGFTTLGPHRADIKV-----KVGGVHAKEVLSRGQQKTLIT 289 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 ++L+ ++ T PI+L+D++ A LD + L + + G+Q+F+T DK Sbjct: 290 HLYLSQLEILRRRTNQRPIVLIDDVGAELDTGNQVTLLTRMLEKGAQVFVTVLDK 344 >gi|94985720|ref|YP_605084.1| DNA replication and repair protein RecF [Deinococcus geothermalis DSM 11300] gi|123257076|sp|Q1IXW9|RECF_DEIGD RecName: Full=DNA replication and repair protein recF gi|94556001|gb|ABF45915.1| DNA replication and repair protein RecF [Deinococcus geothermalis DSM 11300] Length = 358 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 98/372 (26%), Positives = 164/372 (44%), Gaps = 33/372 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+ +RN A L F A T G+NG GKTN+LEA G DV Sbjct: 4 VQLSSLSTLNYRNLAPGTLHFPAGVTGVFGENGAGKTNLLEAAYLALTG-------LTDV 56 Query: 65 TRIGS---PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 TR+ + R + +G +SI+ E R R L+++ V + D L + Sbjct: 57 TRLEQLIQSGEREAYVRADVQQG-GSLSIQ-EVGLGRGRRHLKVDGVRAKTGD-LPRGSA 113 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + W+ P + G RR +LD ++ + R+ +++ +ER + RN L G Sbjct: 114 V-WIRPEDSELVFGPPAGRRAYLDALLSRLSARYGQQLARYERTVAQRNAALKAG---ED 169 Query: 182 WCSSI-EAQMAELGVKINIARVEMINALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQS 239 W + + + +LG I + R + L L E Q + + L+L S Sbjct: 170 WAMHVWDDALVKLGTDIMLFRRRALTRLDELAREANAQLGSRKPLTLTL----------S 219 Query: 240 FCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 E YA L R+ + +SR T+ GPHR DLI+ + + + S GE + V + Sbjct: 220 ESTTPETYAHDLA-ARRAEELSRGATVTGPHRDDLILTLGELPAS-EYASRGEGRTVALA 277 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + A L++ G P+LL+D+ +A LD +R L + + Q +TGT+++ +L Sbjct: 278 LRCAELELLAEKFGEKPVLLIDDFTAELDPGRRGFLLDLAASV-PQAIVTGTERAPGAAL 336 Query: 359 NETAKFMRISNH 370 A R + Sbjct: 337 TLRAHAGRFTEE 348 >gi|289523931|ref|ZP_06440785.1| putative DNA replication and repair protein RecF [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502587|gb|EFD23751.1| putative DNA replication and repair protein RecF [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 354 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 89/363 (24%), Positives = 162/363 (44%), Gaps = 62/363 (17%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 ++N +R+ + + VG N GKTN LEA+S L +R D+ SP Sbjct: 11 YKNLKPVRISWHKGLNVVVGPNASGKTNTLEALSMLCGWGQVQRGKLRDLVNWDSPGQAR 70 Query: 75 TFARVEGMEGLADISIKLETRDDR--SVRCLQINDVVIRVVDELNKHLRISWLVPSMD-- 130 +++ G E +IS+ + +D R SV Q + +R+ H VP + Sbjct: 71 LYSQFNGEE---NISVVVSIQDKRTISVAGKQCSASTLRL------H------VPCLSFW 115 Query: 131 ----RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD------- 179 R+ G RR FL+ + I P + RR+ D+ +L+R +N +L G +D Sbjct: 116 SDDVRLIEGSPAIRRNFLNHLCATIVPLYARRLYDYRKLLRHKNYILRAGRYDDAVIKAM 175 Query: 180 ---SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLSLTGF 231 ++W S + +L +K+ + V SS ++E+ +++ N + + L F Sbjct: 176 APVAAWLWSYRRSIVDL-LKVGLKEV------SSHLVEFDFEVDIEEGNKDYYEDPLEAF 228 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + KEE A+K+ +L+GPHR DL + + A S G+ Sbjct: 229 ----YKSLAFFKKEEIARKV------------SLVGPHRDDLRITVKGRPAFQAL-SRGQ 271 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 ++ + V +A A+++ +PI+LLDE++A LD + + L + + + Q+ D Sbjct: 272 RRKLAVAFMMASAKVVEYKLKRSPIILLDEVTAELDREGKEQLIKALFESNWQVITATAD 331 Query: 352 KSV 354 + + Sbjct: 332 EQL 334 >gi|16799084|ref|NP_469352.1| recombination protein F [Listeria innocua Clip11262] gi|20978613|sp|Q92FU8|RECF_LISIN RecName: Full=DNA replication and repair protein recF gi|16412426|emb|CAC95238.1| RecF protein [Listeria innocua Clip11262] Length = 370 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 88/364 (24%), Positives = 158/364 (43%), Gaps = 46/364 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG ++ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPMLLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249 A++ + + R + I L + + + + LK EY A Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228 Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 VTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFD 356 S D Sbjct: 347 SGID 350 >gi|167628098|ref|YP_001678598.1| DNA replication and repair protein RecF [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|259563369|sp|B0U178|RECF_FRAP2 RecName: Full=DNA replication and repair protein recF gi|167598099|gb|ABZ88097.1| DNA replication and repair protein RecF [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 349 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 157/361 (43%), Gaps = 21/361 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN F VG NG GKT+ILE+I FLS R FR + + S Sbjct: 6 LRLQNFRNIPIKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHDS 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F E + +S R S ++N + + E+ + L I + P Sbjct: 66 DEFIVYTKAYNPDEVVISLS-----RKKNSNNISKLNSEIQKNHTEITRVLPIQLMNPES 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 I + + +R + LD F +D + + L++ RN L + Y ++ + I+ + Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNY-PKAYINGIDKK 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + E ++ R L I E + + N P +KL + F +S + EE Sbjct: 180 LCEFADILDYKRQAYFIKLKPKIYEVLSQFN-PDLKLDIDYFRGWNSHKSLVQVLEES-- 236 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 FD D+ T GPH++D+++ K I S G+QK+++ I LA + ++ Sbjct: 237 --FDS---DNRYNVTNHGPHKADIVLTINHKPIQDIF-SRGQQKLLICAIKLAQGEIHNS 290 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 I L+D+I++ LD LF + ++ SQ+F+T T++ N+ F+ + + Sbjct: 291 ENENKCIYLIDDITSELDNTHTKTLFSYLKNLKSQVFITTTEE------NKIIDFLDLDS 344 Query: 370 H 370 H Sbjct: 345 H 345 >gi|260904979|ref|ZP_05913301.1| recombination protein F [Brevibacterium linens BL2] Length = 374 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 37/366 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VT 65 I L++ +R+Y L L F+ T FV DNG GKTNI+EAI +L+ R R A A V Sbjct: 3 ISRLSLRNYRSYPELDLEFEPGVTTFVADNGTGKTNIVEAIGYLAHLRSHRVAFDAPLVN 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE----TRDDRS-VRCLQINDVVIRVVDELNKHL 120 + S + ++SI+ + R +RS V+ +I +V VV Sbjct: 63 ESAQTATVSALVNRDQRHATVEVSIQSKGANRARVNRSPVKMKEILGLVSCVV------- 115 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 P + G ERR ++D +V + +PR+ + DFER ++ RN LL D Sbjct: 116 ----FAPEDLSLVRGEPAERRSWMDTLVVSRNPRYSSVITDFERALKQRNALLKRLREDR 171 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHI-------KLSLTGF 231 +EA + + + E++ ++ + V+ ++NF +I + + Sbjct: 172 D--PGLEATLDIWNMAYADSASELVYGRQRILADIVEPLQKNFAYIAADARLERQGIQAR 229 Query: 232 LDGKFDQSFCALKEEYAKKLF---DGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHG 287 D + D S E + L + R+ + R TL GP R DL + D + Sbjct: 230 YDSRIDYSQAESAAECRELLLAALERRRTTEIERGLTLHGPGRDDLALTIGDHPAK-GYA 288 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFA---PILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 S GE + + + LA L+S+ G A P+L+LD++ A LD +RN L +T+ Q Sbjct: 289 SHGETWSLALAMQLAGWDLLSSDAGSAAEQPVLVLDDVFAELDTGRRNRLASRITE-AEQ 347 Query: 345 IFMTGT 350 +F+T Sbjct: 348 VFITAA 353 >gi|281356710|ref|ZP_06243201.1| DNA replication and repair protein RecF [Victivallis vadensis ATCC BAA-548] gi|281316837|gb|EFB00860.1| DNA replication and repair protein RecF [Victivallis vadensis ATCC BAA-548] Length = 353 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 99/346 (28%), Positives = 158/346 (45%), Gaps = 26/346 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ FR+YA+ R F + +F G NG GKTN+LE+I FLS R FR S ++ R Sbjct: 4 IEQLELANFRSYAAGRFRFSSSRVVFTGPNGAGKTNLLESIYFLSILRSFRTVSGRELVR 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 IG F ARV+ +G ++L + R I IR E + R V Sbjct: 64 IGERG-FELKARVD--KGAYHEELRL-AQTLAGKRETWIGANRIRRSSEFIREFRAVVFV 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P I G S RRRF D M+ +D + + ++ R + RNR L + ++ ++ Sbjct: 120 PEDRNISGGSSSFRRRFFDMMISTLDGGYLTALNNYYRALSQRNRALKQKE-QAAVAAAF 178 Query: 187 EAQMAELGVKIN---IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFC 241 E +MA +N IAR I A LI E V + L+ G L+ + + Sbjct: 179 EPEMA-----VNAPLIARQRRIYA--KLIEEEVSR------MLAEDGNLEFRIVCRTDYP 225 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIF 300 EY + L R + + TL GP + D+ + + +GSTG+ +++ + + Sbjct: 226 ENAAEYREMLERNRPKEQLRSCTLSGPQLDEF--DFLLNGKLLRYYGSTGQIRIISLLLK 283 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 LA L+ +L+D+++ LDE + FR ++ Q F Sbjct: 284 LAEFNLVKRAAKEPVAVLVDDVTGELDELNKARFFRTISGADQQFF 329 >gi|307265435|ref|ZP_07546991.1| DNA replication and repair protein RecF [Thermoanaerobacter wiegelii Rt8.B1] gi|306919549|gb|EFN49767.1| DNA replication and repair protein RecF [Thermoanaerobacter wiegelii Rt8.B1] Length = 362 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 160/354 (45%), Gaps = 21/354 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRN ++ F IF G N GK+N+LE+I LS GR FR + ++ + Sbjct: 3 VKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTELIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F + + + D I+ + + + + +++N I+ EL L Sbjct: 63 FGEDYF---YVKAIICQENNDKKIEFGYKKNEN-KVIKVNGNKIKSTSELLGQLLTVIFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183 P I RR++LD + ++ + ++ + +++ RN+LL EG S Sbjct: 119 PEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILINRNKLLKTIKEGK-SRSIL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G KI + R + + I ++ + E + L+ G D ++ Sbjct: 178 EIFDDQLVEYGAKIIVVRQSYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEEIV 237 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298 +E K D +D T +GPHR D +I++ D + + S G+Q+ V + Sbjct: 238 KKRLKEKLLKNID---LDLKYLTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTVALC 291 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ ++ T PILLLD++ + LDE+++ + + G Q F+T T K Sbjct: 292 LKLSEFEILKKETSEKPILLLDDVMSELDENRKKYILERLQ--GFQTFITHTTK 343 >gi|229816228|ref|ZP_04446538.1| hypothetical protein COLINT_03278 [Collinsella intestinalis DSM 13280] gi|229808236|gb|EEP44028.1| hypothetical protein COLINT_03278 [Collinsella intestinalis DSM 13280] Length = 360 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 171/374 (45%), Gaps = 36/374 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +R++ ++ D T+FVG N VGKTN++EA+ L+ G FR+ + +++ R G Sbjct: 8 LSVLHYRSFDDRKIELDPGITVFVGRNAVGKTNLVEALQLLTAGASFRKPTASELLRDGE 67 Query: 70 PSFFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 S +EG L ++ + TR+ + R I V+ V+ Sbjct: 68 GSGRIRLM-LEGEGRLIEMGLDFSEGKRSFTRNGKKARAAGIRGVLPSVL---------- 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + + RR LD ++ + + + +ER + RN LL +GY Sbjct: 117 -FCPDHLDMVKRSASRRREALDSFGVQLNENYAKLLAAYERTVEQRNNLLRDGYA-PGLL 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + +A G ++ + R ++ + +E V + PH + D ++ SF L Sbjct: 175 EVWDESLATTGAQLLLHRTALLERIREHFIE-VYRAIAPHEE------PDVRYVPSFGEL 227 Query: 244 ---KEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +E A + D R+ D + R TL+GPHR +++ D GS G+Q+ ++ Sbjct: 228 AGGREAIAAQFLDALAQRREDELRRGCTLVGPHRDEVLF-TIDGRSARDFGSQGQQRSIV 286 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF- 355 + +A ++ + G P+LLLD++ + LD +R+A+ + D Q +T T+ F Sbjct: 287 LAWKIAEVQVTRDILGRYPLLLLDDVMSELDAARRDAIVGFIAD-EIQTVITTTNLGYFA 345 Query: 356 DSLNETAKFMRISN 369 D + A+ +RI + Sbjct: 346 DDMLARARVIRIGD 359 >gi|300721092|ref|YP_003710360.1| gap repair protein [Xenorhabdus nematophila ATCC 19061] gi|297627577|emb|CBJ88096.1| gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction [Xenorhabdus nematophila ATCC 19061] Length = 363 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 97/364 (26%), Positives = 162/364 (44%), Gaps = 19/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN A+ L VG NG GKT+ILEAI L GR FR V R Sbjct: 6 LLIRDFRNIANADLPLATGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSIQAGRVIRHDC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F R++ +S+ L +++ + ++I+ + EL K L + + P Sbjct: 66 EEFI-LHGRLDQQFHERSLSVGL-SKNRQGGSQVRIDGSDGHKIAELAKMLPMQLITPEG 123 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR F+D F +PR + +RL++ RN R +T W Sbjct: 124 FTLLNGGPKYRRAFIDWGCFHNEPRFFMAWGNLKRLLKQRNAALRQVTRYNQIQHW---- 179 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A L +I+ R E I +S I E K+ P LS++ F Q + + E Sbjct: 180 DRELAPLATEISQWRAEYIAGISEDI-ERTCKQFLPEFTLSIS------FQQGWDK-ESE 231 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D S G+ K+++ + LA Sbjct: 232 YAELLARQFERDRSLTYTASGPHKADLRI-RADGTPVEDMLSRGQLKLLMCALRLAQGEY 290 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 + +G + LLD+ ++ LD +R L + +Q+F++ T V D ++ ++ Sbjct: 291 FTRQSGQKCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAITSGQVTDMIDVNSRMF 350 Query: 366 RISN 369 R+ + Sbjct: 351 RVED 354 >gi|149919819|ref|ZP_01908296.1| DNA replication and repair protein RecF [Plesiocystis pacifica SIR-1] gi|149819426|gb|EDM78857.1| DNA replication and repair protein RecF [Plesiocystis pacifica SIR-1] Length = 406 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 97/385 (25%), Positives = 162/385 (42%), Gaps = 45/385 (11%) Query: 5 IKIKFLNISEFRNY---------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++++ L +++FRN+ + L F + T+ G NG GKTN+LEA+ S R Sbjct: 1 MELRRLTLADFRNFRGATPEQPGPGVELAFGERFTVLWGHNGAGKTNVLEALYLCSTLRS 60 Query: 56 FRRASYADVTRIGSPSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCL----QINDV 108 FR + R G ARVE +E D + LE R DR R +++ Sbjct: 61 FRTTDAKALLRRG-----QDHARVE-LEAFDDDLGLDTCLEVRIDRGARSTRRSARVDGK 114 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 ++R + ++ P I G RR+FLDR++FA H + +E+L+R Sbjct: 115 LVRSATDFYGRVQAVLFTPEDLGILRGSPGGRRQFLDRVLFARQRAHIADVQRYEKLLRS 174 Query: 169 RNRLLTEGYFD------SSWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKE 219 RNR+L + + + + +AE+G +I R ++ L + ++ Sbjct: 175 RNRVLKTDPAELPRAERTRMLDTYDHGLAEVGAQIWDRRQGLVEDLREPFAAAFAHIHDR 234 Query: 220 NFPHIKLSLTGFLDG-------KFDQSFCAL------KEEYAKKLFDGRKMDSMSRRTLI 266 P + + Q A+ ++ A+ L D R+ D + RT + Sbjct: 235 RDPGEGGAALAAGLAYGARVLTRESQPATAVEDLPGRQQALAQALRDTRRRDEAAGRTTV 294 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 GPH DL V D S G+ + +++ +A R G P LLLD++S+ L Sbjct: 295 GPHLDDLHV-RLDGVEAGDFASQGQARALVLAFKIAELRDAQQRHGRRPTLLLDDVSSEL 353 Query: 327 DEDKRNALFRIVTDIGSQIFMTGTD 351 D + LF + Q +T TD Sbjct: 354 DPRRSARLFETLAQEVGQCVLTTTD 378 >gi|320449208|ref|YP_004201304.1| RecF protein [Thermus scotoductus SA-01] gi|320149377|gb|ADW20755.1| RecF protein [Thermus scotoductus SA-01] Length = 340 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 102/324 (31%), Positives = 151/324 (46%), Gaps = 28/324 (8%) Query: 16 RNYASLRL-VFDAQHTIF--VGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 RN+ +L L F +F VG N GKT++L I L+ G G RAS AD+ R G Sbjct: 9 RNFRNLALSAFQPPQGLFALVGGNAQGKTSLLLGI-HLALG-GEVRASLADLIRFGEEEA 66 Query: 73 FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 + A VE GL I +L + R + L V +R + EL + + +P + Sbjct: 67 WLQ-AEVETELGLYRIEQRLRP-EGREI-VLNEKAVSLRALHELPGSVLV---LPEDVEV 120 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 G ERR FLDR++ R+ + +E+ +R RN LL G + + ++A Sbjct: 121 VLGSREERRTFLDRLIGRFSRRYTALLSAYEKALRQRNALLKAG---GNGLEVWDQELAR 177 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGFLDGKFDQSFCALKEEYAKKL 251 G +I +A I + V + P L + G+F ++ A +EE +L Sbjct: 178 YGAEI-MAFRRRFLRRFLPIFQSVHRSLAPGEAGLLVEETAQGEFLEALRARREE---EL 233 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 G+ TL+GPHR DL+ + + GS GE K V + + LA RL+S Sbjct: 234 LKGQ--------TLVGPHRDDLVFLLSGRPVH-RFGSRGEAKGVALALRLAEHRLLSEHH 284 Query: 312 GFAPILLLDEISAHLDEDKRNALF 335 G AP+LL+DE S LDE KR A+ Sbjct: 285 GEAPLLLVDEWSEELDEGKRQAVL 308 >gi|266620981|ref|ZP_06113916.1| DNA replication and repair protein RecF [Clostridium hathewayi DSM 13479] gi|288867362|gb|EFC99660.1| DNA replication and repair protein RecF [Clostridium hathewayi DSM 13479] Length = 361 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 86/352 (24%), Positives = 150/352 (42%), Gaps = 28/352 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY L + F I GDN GKTNILEAI + + R + ++ + Sbjct: 3 IESIELKNYRNYDKLHMDFSHGTNILYGDNAQGKTNILEAIYVCATTKSHRGSKDKEIIQ 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 S R + D+ +K + + +N V I+ EL + + + Sbjct: 63 FDRDESHIKLNVRKRDVPYRIDMHLK-----KNRAKGVAVNGVPIKKASELFGIVNVVFF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + ERRRF+D + ++ + ++ + +++ RN+LL + F + + Sbjct: 118 SPEDLNLIKNGPAERRRFIDLELCQLNKLYVHSLVQYNKIITQRNKLLKDIMFRPDYEET 177 Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ Q+ + G ++ R ++ L+ LI H +LS G+ + Sbjct: 178 LDIWDMQLVQYGREVIRCREAFVSQLNDLIGTI-------HRQLS------GEKESLHIC 224 Query: 243 LKEEYAKKLFD-----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + +F+ R D R TL GPHR DL D I GS G+Q+ + Sbjct: 225 YEPNVTADMFEDTLRKSRPSDLKQRTTLTGPHRDDLSFIINDIDIR-RFGSQGQQRTAAL 283 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + LA L+ PILLLD++ + LD ++N L + I + I TG Sbjct: 284 SLKLAEIELVKKIVNDYPILLLDDVLSELDGSRQNHLLSGINHIQTMITCTG 335 >gi|308066842|ref|YP_003868447.1| DNA repair protein RecF [Paenibacillus polymyxa E681] gi|305856121|gb|ADM67909.1| DNA replication and repair protein RecF [Paenibacillus polymyxa E681] Length = 371 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 88/347 (25%), Positives = 149/347 (42%), Gaps = 16/347 (4%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + ++RNY L L + +G N GKTN++EAI L+ + R + ++ G+ S Sbjct: 8 LQQYRNYEQLELNEFGPVNLLIGQNAQGKTNLVEAIFVLALTKSHRTSRDKELISFGATS 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 A V+ G + + L T+ ++ +IN + R + + L + P Sbjct: 68 THLA-ADVDKKYGKIRLDLALSTQGKKA----KINGLEQRKLSDFIGSLNVVMFAPEDLE 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI----- 186 I G RRRFLD + + P + + +++++ RN LL + + + Sbjct: 123 IVKGTPGVRRRFLDMEIGQVAPGYLYHLQQYQKVLVQRNNLLKQAWGKDMASVQLMLEVW 182 Query: 187 EAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 Q+ E GVKI R + I L + I E + +KL+ ++ L Sbjct: 183 NEQLVEHGVKIVKKRKQFITKLQKWAQAIHEGIAG-GTEELKLTYVPSFSEPEEEDEAVL 241 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + KL R+ + TL GPHR DL + + +GS G+Q+ + + LA Sbjct: 242 LERFMIKLSQMREQEIRRGMTLAGPHRDDLAFAINGREVH-TYGSQGQQRTTALSLKLAE 300 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LI G P+LLLD++ + LD ++ L Q F+T T Sbjct: 301 IELIHEEIGEYPVLLLDDVLSELDPYRQTQLIETFQS-KVQTFITAT 346 >gi|146329283|ref|YP_001209128.1| DNA replication and repair protein RecF [Dichelobacter nodosus VCS1703A] gi|146232753|gb|ABQ13731.1| DNA replication and repair protein RecF [Dichelobacter nodosus VCS1703A] Length = 356 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 159/353 (45%), Gaps = 20/353 (5%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++I L FR+ S L F + I G G GKT +LEA+ L G+ FR A Sbjct: 1 MRIDSLQTQHFRHLKSAAALAFHPKLNIISGKTGSGKTALLEALYCLGRGKSFRTAQVRH 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S+F A + +G + ++ R R ++++ + + L L + Sbjct: 61 MIAY-QQSYFRLIAELSDQDGNYFLGMERRARGYR----VRLDGQTLNGLSALAALLPVH 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + + + ERRRFLD +F D ++ ++GRNR L EG+ D + Sbjct: 116 IVYADHFSLLTAAPQERRRFLDYGLFFDDAAFLPLWQRYQYALKGRNRALMEGWQDH-YI 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S +AE KI+I R + + L + + +Y H L L ++D+ + Sbjct: 175 RSWHPLLAETAEKIDILRRDYLKRLENRLNQY-------HAHLGGLQTLRIRYDRGWHG- 226 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLA 302 + + L + D + T G HR+D + +C+ IAH S G+QK VL + L+ Sbjct: 227 --DLRQTLDENLARDQQIKYTRDGIHRADWRL-FCED-YDIAHTFSRGQQKTVLCALILS 282 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 A I + P++L+D+I+A LD +++ L R + +Q+F+T + + Sbjct: 283 QADEIRARSKKVPVILVDDITAELDIERQQLLLRFLQASEAQLFITALEAKLL 335 >gi|331007623|ref|ZP_08330765.1| DNA recombination and repair protein RecF [gamma proteobacterium IMCC1989] gi|330418563|gb|EGG93087.1| DNA recombination and repair protein RecF [gamma proteobacterium IMCC1989] Length = 378 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 164/360 (45%), Gaps = 18/360 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+I RN + + + IF GDNG GKT+ILEA++ + GR FR + Sbjct: 4 LKTLSIQHLRNLNEVSIELSHKINIFYGDNGSGKTSILEAVALVGLGRSFRSHKTRSLVN 63 Query: 67 IGSPSFFSTFARVEGME---GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + F ++ + G A I + ++ + ++++ IR L K L + Sbjct: 64 -HQQTQLTVFTHLDVSDIDVGSASIPVGVQ-KSRNGTGAIRVSGETIRSAAILAKQLPLL 121 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + ++ G ++RR+FLD +VF + P ++ ++ RN LL S Sbjct: 122 IINAGSFQLIEGSPVQRRQFLDWLVFHVKPEFAELWRALQKALKQRNSLLRRDKITRSDI 181 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-CA 242 + ++ L I+ R E+ +L S Q+ + + + + D S A Sbjct: 182 KPWDHELVRLSQVIDSFRSEVFLSLISCFERCGQEFAVDQLNIDMEYYRGWDKDLSIEAA 241 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVGIFL 301 L+ ++ + DG T GP R+D+ + K A+ + S G++K ++ + + Sbjct: 242 LENDFERDCRDG--------YTHQGPQRADIKIKSKSKPAVDVL--SRGQEKSLICALTI 291 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNE 360 A A L +T + L+D+++A LD+ L + +T++ +Q+ +TG +K +F N+ Sbjct: 292 AQAHLYQQSTSGNCVFLIDDLAAELDKQHIETLTKWLTELNAQVLVTGVNKEELFSPWNK 351 >gi|166362989|ref|YP_001655262.1| recombination protein F [Microcystis aeruginosa NIES-843] gi|189039629|sp|B0JM53|RECF_MICAN RecName: Full=DNA replication and repair protein recF gi|166085362|dbj|BAG00070.1| DNA replication and repair protein [Microcystis aeruginosa NIES-843] Length = 375 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 182/370 (49%), Gaps = 34/370 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNYA L F+++ TI +G+N GK+N+LEAI L+ + R + D+ Sbjct: 3 LEHLHLHSFRNYAEQVLKFESKKTILLGNNAQGKSNLLEAIELLATLKSHRVSKDRDLV- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + S S FARV + G +++S+ L + R+ VIR L +HL ++ Sbjct: 62 LESDSEARIFARVNRLYGASELSLILRSSGRRT---------VIRDRQPLRRHLDFLGVI 112 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175 ++ FS L ++ RR +LD ++ ++P + + + +++R RN LL E Sbjct: 113 NAVQ--FSSLDLDLVRGGPEARRDWLDTLLIQLEPLYVHILQQYNQVLRQRNALLKEIRK 170 Query: 176 ------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 Y D S + Q+AE G ++ R ++ L L ++ + + L L Sbjct: 171 QELEGKVYGDLSQLKLWDLQLAETGSRVTRRRARVLQRLIPLAQKWHESISGKTELLELQ 230 Query: 230 GFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHG 287 + + + ++ + K+ R + +++GPHR + VD+ ++ ++G Sbjct: 231 YIPNVPWVEDDVNGVQRAFLDKIETRRLAEKQLGTSVVGPHRDE--VDFLINQNPAKSYG 288 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S G+Q+ +++ + LA +L+ G P+LLLD++ A LD +++N L + D Q + Sbjct: 289 SQGQQRTLVLALKLAELQLLEQIIGEPPLLLLDDVLAELDIERQNQLLDAIED-RFQTLI 347 Query: 348 TGTDKSVFDS 357 T T S F+S Sbjct: 348 TTTHLSSFES 357 >gi|220910787|ref|YP_002486096.1| recombination protein F [Arthrobacter chlorophenolicus A6] gi|254790459|sp|B8H7D1|RECF_ARTCA RecName: Full=DNA replication and repair protein recF gi|219857665|gb|ACL38007.1| DNA replication and repair protein RecF [Arthrobacter chlorophenolicus A6] Length = 402 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 98/389 (25%), Positives = 171/389 (43%), Gaps = 41/389 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++++FR+YA + LV T+ VG NG+GKTN++EAI +L+ R +S + R Sbjct: 3 LEHLSLTDFRSYAQVDLVLSPGVTVLVGYNGIGKTNLMEAIGYLATLSSHRVSSDGPLLR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ R + ++LE R+ R +R D L + Sbjct: 63 FGTE---RALVRARLVRNGQTTVLELEINAGRANRGRINRSNPVRARDLLGI-CQTVLFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183 P + G RRRFLD ++ ++ P H D++R+++ RN LL G ++ Sbjct: 119 PEDLALVKGDPSNRRRFLDELLASLVPHHAATRSDYDRVLKQRNALLKSARAGRVTAAHE 178 Query: 184 SSIEA---QMAELGVKINIARVEMINAL-SSLIMEYVQ-----KENFPHIKLSLTGFLD- 233 ++++ MA+ G ++ AR+E++ L L Y + K + +L +D Sbjct: 179 ATLDVWDQHMAKAGAELLHARLELVELLRPHLARAYAELTDASKPADAIYRSTLQNQMDD 238 Query: 234 -----------GKFDQ---------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 G D S L + Y + + RK + +L+GPHR DL Sbjct: 239 DGASLGATGRPGPGDAAAAEDLRGLSIEELTQRYVRAFGESRKKELERGISLVGPHRDDL 298 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDEDK 330 + +A + S GE + + + LA ++ + T G APIL+LD++ A LD + Sbjct: 299 EL-VLGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELDVQR 357 Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 R L IV+ + D + + L+ Sbjct: 358 RRKLAAIVSGAEQVLVTAAVDADIPEELS 386 >gi|251787655|ref|YP_003002376.1| recombination protein F [Dickeya zeae Ech1591] gi|247536276|gb|ACT04897.1| DNA replication and repair protein RecF [Dickeya zeae Ech1591] Length = 361 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 97/364 (26%), Positives = 158/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR A V R Sbjct: 6 LLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F R+EG E + + D +VR I+ V EL + L I + P Sbjct: 66 AEFI-LHGRIEGQERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F +P + +RL+R RN L + ++ +W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQVSHYGQLRAW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L I+ R E +A+++ I + P LS + F G +S + Sbjct: 178 DRELVPLAEGISRWRAEYSSAIAADIGSTC-AQFLPEFSLSFS-FQRGWDKES------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T +GPH++D + A+ S G+ K+++ + LA Sbjct: 230 YAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ G + L+D+ ++ LD +R L + +Q+F++ T + + D + E K Sbjct: 289 LTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGKMF 348 Query: 366 RISN 369 R+ Sbjct: 349 RVEQ 352 >gi|304385858|ref|ZP_07368202.1| recombination protein F [Pediococcus acidilactici DSM 20284] gi|304328362|gb|EFL95584.1| recombination protein F [Pediococcus acidilactici DSM 20284] Length = 374 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 23/358 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRNYA L + F + + +G+N GKTN+LE+I FL+ R R ++ D+ Sbjct: 3 LKTLELHNFRNYADLSVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTSNDRDL-- 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 IG + + ARV G +E + ++N + + + L + Sbjct: 61 IG---WKAKEARVLGTIQKEHTQTPVEIDISSKGKNAKVNHIEQGRLSQYVGQLNVILFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS----W 182 P I G RRRF+D + ++ + +++ RN+ L + D + Sbjct: 118 PEDLSIVKGSPAVRRRFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYLKQLQIDPKGDQVY 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDGK 235 + Q+A G +I R++ + L I + ++K F ++ L Sbjct: 178 LDVLSDQLAAYGAEIIFQRIQFLKKLEEWSQAVHEEISQGLEKLTFQYVS-PLKKDETTS 236 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + + AL+E K R+ + +TL+GPH D+ K ++ GS G+Q+ Sbjct: 237 TETIYTALQELLKKH----RQRELQQGKTLVGPHLDDVKFIVNGKNVS-TFGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA L+ TG P+LLLD++ + LD+ ++ L + + Q F+T T S Sbjct: 292 ALSVKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQN-KVQTFITTTSLS 348 >gi|62185059|ref|YP_219844.1| recombination protein F [Chlamydophila abortus S26/3] gi|81312775|sp|Q5L648|RECF_CHLAB RecName: Full=DNA replication and repair protein recF gi|62148126|emb|CAH63883.1| DNA replication and repair protein [Chlamydophila abortus S26/3] Length = 367 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 155/353 (43%), Gaps = 33/353 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNY + G+N GKTN++EA+ LS GR FR + + GS Sbjct: 6 LRLKNFRNYKEAEVSLSPNINYIFGENAQGKTNLIEALYVLSLGRSFRTSHLTEAIFFGS 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 FF TF + +G+ L T D+ + + + I+ + +L + I L Sbjct: 66 SYFFLEMTFEK----DGVPHT---LSTYVDKHGKKIFCDQSPIKTLSQLIGMIPIV-LFS 117 Query: 128 SMDR-IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 + DR + +G +RR FL+ ++ DP+++ + + R + RN LL +S S Sbjct: 118 AKDRCLIAGAPSDRRLFLNLLLSQCDPQYKHSLSYYHRALLQRNTLLKTK--QTSTLSVW 175 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF---CAL 243 + Q+A LG + ++R L+ LI SL+ L KF S C + Sbjct: 176 DEQLATLGSYLCLSRYTCCAQLNQLIQTLWNN--------SLSERLFIKFKSSLIKQCKI 227 Query: 244 KEEYAKKLFDGRKMDSMSR-----RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +E K + S+ R T +GPHR D + D + +A S+ QK L+ Sbjct: 228 SQEAVKNELHKQLTASLHRDLELGNTSVGPHREDFTLMIND--LPVAQFSSEGQKHSLLA 285 Query: 299 IF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + LA + I + P+ +D+I A LD + + L + +G Q +T T Sbjct: 286 VLKLAESLYIKSLHNVYPLFCMDDIHAGLDNQRISQLLGLAPSLG-QTLITST 337 >gi|311745376|ref|ZP_07719161.1| RecF protein [Algoriphagus sp. PR1] gi|126577921|gb|EAZ82141.1| RecF protein [Algoriphagus sp. PR1] Length = 366 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 87/355 (24%), Positives = 170/355 (47%), Gaps = 30/355 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ +F+N+ +LVF Q VG NG GKTNIL+ I +LS + ++S + + Sbjct: 1 MHLKSLDLLQFKNHEKTQLVFSPQINCIVGLNGSGKTNILDGIHYLSLTKSAVQSSDS-L 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FF+ E ++ +E + + Q + +D+ ++H+ + Sbjct: 60 NVLHDKDFFAIKGHFEIESKPLEVRCTVELGKKKQI--FQNG----KALDKTSEHVGLLP 113 Query: 125 LV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GY 177 LV P + G S RR+F D ++ +D + ++I + ++ RN LL + G Sbjct: 114 LVLIAPDDTDLIRGGSDGRRKFFDGLLSQLDRNYLNQLIRYHHFLKQRNALLKKFAETGR 173 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 D + S + +M L I R E++ ++ ++ + + K+++ + Sbjct: 174 RDLTLLGSYDEEMIILSKAIATRRAELLEEVAPMLQSHYAAISQGQEKVTIVYETE---- 229 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD---LIVDYCDKAITIAHGSTGEQKV 294 AL+E+++ RK D +++ + G H+ D LI D+ + I GS G+QK Sbjct: 230 ----ALREDFSNYFSSLRKKDFITKNSNAGIHKDDYSFLIGDHPIRKI----GSQGQQKS 281 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMT 348 ++ + LA ++ N G P+LLLD+I LD+ + + ++++ QIF+T Sbjct: 282 FIISLKLAQFQIFENAKGEKPLLLLDDIFDKLDDTRIAQMMQLISQHTFGQIFLT 336 >gi|258622960|ref|ZP_05717975.1| recF protein [Vibrio mimicus VM573] gi|258626084|ref|ZP_05720935.1| recF protein [Vibrio mimicus VM603] gi|262166786|ref|ZP_06034523.1| DNA recombination and repair protein RecF [Vibrio mimicus VM223] gi|262172780|ref|ZP_06040458.1| DNA recombination and repair protein RecF [Vibrio mimicus MB-451] gi|258581610|gb|EEW06508.1| recF protein [Vibrio mimicus VM603] gi|258584743|gb|EEW09477.1| recF protein [Vibrio mimicus VM573] gi|261893856|gb|EEY39842.1| DNA recombination and repair protein RecF [Vibrio mimicus MB-451] gi|262026502|gb|EEY45170.1| DNA recombination and repair protein RecF [Vibrio mimicus VM223] Length = 363 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 87/366 (23%), Positives = 170/366 (46%), Gaps = 20/366 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P F R+ +D + + + + D S ++I + + +L + L + + Sbjct: 66 PELF-VHGRICEHSLTSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184 P + + +RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R +N L S + E + + P + L + + DQ + ++ Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ ++ D T GP+++DL + + S G+ K+++ + +A Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351 Query: 364 FMRISN 369 +++ Sbjct: 352 TFHVAH 357 >gi|313900878|ref|ZP_07834368.1| DNA replication and repair protein RecF [Clostridium sp. HGF2] gi|312954298|gb|EFR35976.1| DNA replication and repair protein RecF [Clostridium sp. HGF2] Length = 366 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 84/347 (24%), Positives = 159/347 (45%), Gaps = 7/347 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + FRNYA + + F I G N GKTN+LE+I +LS R R + D+ Sbjct: 1 MRLESLRLHNFRNYADVNVSFTDGIHILTGKNAQGKTNLLESILYLSTTRSHRTSEDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G +FF A + + +I + T +++ + V RV D + + + + Sbjct: 61 IKEGEQAFFIK-ALIAKEQKTEEIRV---TVNEKGKNLFIYQNPVNRVSDFIGEFNSVMF 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 M+ +F RRRF+D + I ++ + RL++ RN L + D S+ Sbjct: 117 CPDDMN-LFQASPRVRRRFVDMELSKISKKYVSTLYVATRLLKERNAYLKQERVDRSYLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +Q+ + V I R + L + ++ + +++ F S ALK Sbjct: 176 VLTSQLVDASVVIMKQRHFFLEELLDKCRTFYRQLSNDDTDITVRYLSCVPFSDSEEALK 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E KK + D + ++T G H+ D I + + ++ S G+++ VL+ + + Sbjct: 236 EALLKKYQKHQDRDLLLKQTTAGIHKEDFIFEMNGHEL-VSFASQGQKRSVLLALKIGMI 294 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +I P+LLLD++ + LD ++ L + + QIF++ TD Sbjct: 295 HMIHEIIQEYPVLLLDDVFSELDSYRKQELLKSLPK-EVQIFISTTD 340 >gi|229491171|ref|ZP_04384999.1| DNA replication and repair protein RecF [Rhodococcus erythropolis SK121] gi|229321909|gb|EEN87702.1| DNA replication and repair protein RecF [Rhodococcus erythropolis SK121] Length = 409 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 102/385 (26%), Positives = 173/385 (44%), Gaps = 34/385 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++ +FR++ SL L T+F+G NG GKTN+LE++ +LS R ++ A + R Sbjct: 3 VRRFSLRDFRSWDSLTLDLTPGTTVFLGSNGHGKTNVLESLGYLSTLSSHRVSADAPMIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 GS S F+ V +++I +E + +S R +IN R E+ L+ Sbjct: 63 SGSASAFAGATVVNNGR---ELTIDVELIEGKSNRA-RINQSPTRRPREVLGILQSVMFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----------TEG 176 P + G +RRR+LD ++ + PR D+++++R R+ LL + G Sbjct: 119 PEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDKVLRQRSALLKTAGAALRRGSRG 178 Query: 177 YFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIME---YVQKENFP---HIKLS 227 + S++E +A G ++ R+E+++ L+ + E + E+ P K S Sbjct: 179 GESDNVLSTLEVWDGHLAAHGAQLLAGRLELVHDLAPHLAESYRSIAPESRPASIRYKSS 238 Query: 228 LTGFLDGKFDQS--------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 L LD +F L+E + +L R + L+GPHR DL + D Sbjct: 239 LGSSLDPEFTDPARISGIDDVAYLEERFHHELAQMRSKEIDRGVCLVGPHRDDLELILGD 298 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 S GE + + LA L+ G P+L+LD++ A LD +R AL + Sbjct: 299 SPAK-GFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRRRRRALATVAA 356 Query: 340 DIGSQIFMTGTDKSVFDSLNETAKF 364 + + V D L E AKF Sbjct: 357 TAEQVLITAAVPEDVPDEL-EAAKF 380 >gi|225386350|ref|ZP_03756114.1| hypothetical protein CLOSTASPAR_00094 [Clostridium asparagiforme DSM 15981] gi|225047532|gb|EEG57778.1| hypothetical protein CLOSTASPAR_00094 [Clostridium asparagiforme DSM 15981] Length = 361 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 151/357 (42%), Gaps = 28/357 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +RNY L + + I GDN GKTNILEA+ + + A D+ R Sbjct: 3 IESIELKNYRNYEELHMELNEGTNILYGDNAQGKTNILEAVYVCCTSKSHKNAKDRDIIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 S R + D+ +K + + IN + IR EL + Sbjct: 63 FDQDESHIKMQIRKNDVPYRIDMHLK-----KNKPKGIAINGMPIRRASELFGIANVVCF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P I ERRRF+D + ++ + ++ + +++ RN+LL E F + + Sbjct: 118 SPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLVQRNKLLKELAFRPDYGET 177 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ Q+ G ++ R + + L+ +I I L+G K D C Sbjct: 178 LDVWDMQLVNYGKEVMEYRGDFVCRLNEMIH---------GIHARLSG---QKEDLKICY 225 Query: 243 LKE----EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLV 297 + ++ + L R D + TL GPHR D + + I I GS G+Q+ + Sbjct: 226 EPDTDAAQFEEALKRSRPQDMKQKTTLCGPHRDD--ISFFVNGIDIRKFGSQGQQRTAAL 283 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + L+ L+ PILLLD++ + LD ++N L + DI + I TG D V Sbjct: 284 SLKLSELELVKQLIHDRPILLLDDVLSELDAGRQNHLLNAINDIQTIITCTGLDDFV 340 >gi|332996042|gb|EGK15669.1| DNA replication and repair protein recF [Shigella flexneri VA-6] Length = 357 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 161/364 (44%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +PR + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPRFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ M+ K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAA-DMDDTCKQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|145297127|ref|YP_001139968.1| DNA replication and repair protein RecF [Aeromonas salmonicida subsp. salmonicida A449] gi|142849899|gb|ABO88220.1| DNA replication and repair protein RecF [Aeromonas salmonicida subsp. salmonicida A449] Length = 367 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 95/345 (27%), Positives = 155/345 (44%), Gaps = 20/345 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S+FRN L I VG NG GKT++LEAI +L GR FR V R G Sbjct: 6 LQLSDFRNIQQASLKLSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRVIRQGE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + F+ FA+ E +EG + I L +D L+I + + +L + L + + P Sbjct: 66 RA-FTLFAQCE-LEG-RQVPIGL-AKDKSGETQLKIAGAQAQRLADLAELLPVQLIHPDG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR +LD VF +P RL++ RN LL + + + + Sbjct: 122 FNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQST-QYRQLAFWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + LG ++ R A++ LI E + + P +SL + + D L E Sbjct: 181 LVRLGGELAEFRASYCQAITPLIKE-MTADFLPEFDISLGFYRGWEKDTPLGDLLEA--- 236 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG---STGEQKVVLVGIFLAHARL 306 G + D T +GP ++D+ + KA + S G+ K+++ + LA Sbjct: 237 ----GFERDRTLGYTGVGPQKADVRL----KANGVPAQDILSRGQLKLLVCAMRLAQGLY 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 ++ + I L+D+ ++ LD DKR L + GSQ+F+T D Sbjct: 289 LNQHSSRGCIFLIDDFASELDVDKRRLLATRLKQCGSQVFITAID 333 >gi|104773261|ref|YP_618241.1| recombination protein F [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123378549|sp|Q1GC40|RECF_LACDA RecName: Full=DNA replication and repair protein recF gi|103422342|emb|CAI96850.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 381 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 23/358 (6%) Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ G F Sbjct: 9 SGFRNLAPLNLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREMIAFGQ-DF 67 Query: 73 FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 S RV + D+ I + + + +N V + + HL P + Sbjct: 68 ASLAGRVHKRQLDLDLRIVISKKG----KSAWVNRVEQARLSKYVGHLNAILFSPEDMEL 123 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188 G RRRF+D I+P + + +L++ RN L + D + Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQVLLGVLTE 183 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 Q+A ++ R + L+ E + + +L + K + + + Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242 Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302 +KL D D RR T +GPHR DL K AH S G+Q+ + + + LA Sbjct: 243 QKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLA 299 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 +LI TG PILLLD++ + LD++++ AL + +Q F+T TD DS+++ Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QTQTFITTTD---LDSISQ 353 >gi|260665213|ref|ZP_05866062.1| recombination protein F [Lactobacillus jensenii SJ-7A-US] gi|260560950|gb|EEX26925.1| recombination protein F [Lactobacillus jensenii SJ-7A-US] Length = 374 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 151/362 (41%), Gaps = 34/362 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + +RN+ L F IF+G N GKTN+LEA+ FL+ R R S ++ R Sbjct: 3 LKQLKLQNWRNFEELETGFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + + G + + L+ R + + IN + + L Sbjct: 63 FGQKATI-----LSGHVVKSQVETDLQVRINAKGKKAWINRIEQSKLSRYVGQLTAILFS 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P + G RRRF+D I+P + + ++++ +N L + D + Sbjct: 118 PEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDKVF 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI-------------MEYVQKENFPHIKLSLT 229 + Q+A L +I R++ + LS +E V + P +T Sbjct: 178 LEVLSDQLAGLAAEIISRRLKYLTYLSEYAKKAYAAISNEKEQLEVVYNPSVPLTSEQIT 237 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + + + K+ A ++ G TL GPHR DL DK + S Sbjct: 238 S--ESIYHEVLACFKKNEAGEIRTG--------TTLSGPHRDDLKF-LLDKKDAHLYASQ 286 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ + + + LA +LI TG P LLLD++ + LD +++AL + +Q F+T Sbjct: 287 GQQRTIALSLKLAEIQLIHQITGEYPALLLDDVMSELDHTRQSALLNYIHG-KTQTFITT 345 Query: 350 TD 351 TD Sbjct: 346 TD 347 >gi|145592571|ref|YP_001156868.1| recombination protein F [Salinispora tropica CNB-440] gi|189039640|sp|A4X0U0|RECF_SALTO RecName: Full=DNA replication and repair protein recF gi|145301908|gb|ABP52490.1| DNA replication and repair protein RecF [Salinispora tropica CNB-440] Length = 377 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 93/358 (25%), Positives = 158/358 (44%), Gaps = 26/358 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y + + + + VG NGVGKTN++EA+ +++ R A+ A + R Sbjct: 3 VRRLELVDFRSYERVGVDLEPGANVLVGPNGVGKTNLIEALGYVATLDSHRVATDAPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+ + A V EG E + ++LE R+ R R D L LR+ Sbjct: 63 MGAAAGIIRCAVVHEGRE----LLVELEIVPGRANRARLGRSPARRARDVLGA-LRLVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178 P + G +RRR+LD ++ PR+ D+ER++R RN LL Y Sbjct: 118 APEDLELVRGDPAQRRRYLDDLLVLRQPRYAGVRTDYERVVRQRNALLRTAYLARKTGGT 177 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL-----SLTG 230 D S + + +A G ++ R++++ AL+ + S Sbjct: 178 RGGDLSTLAVWDDHLARHGAELLAGRLDLVAALAPHVNRAYDAVAAGAGAAGIAYRSSVE 237 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D++ L + L GR + TL+GPHR +L + + S G Sbjct: 238 LASSTADRA--DLTAALSDALAAGRTAEIERGTTLVGPHRDELTLTLGPLPAK-GYASHG 294 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 E + + LA L+ G P+L+LD++ A LD +R+ L +V D SQ+ +T Sbjct: 295 ESWSFALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRDRLAELVGD-ASQLLVT 350 >gi|194477068|ref|YP_002049247.1| putative DNA repair and genetic recombination protein RecF [Paulinella chromatophora] gi|171192075|gb|ACB43037.1| putative DNA repair and genetic recombination protein RecF [Paulinella chromatophora] Length = 390 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 174/374 (46%), Gaps = 50/374 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 I++ L + +FRNY+ L + + +G+NG GK+N+LEA+ L R + D+ Sbjct: 20 IRLHRLELKQFRNYSYQELQLETPRLLLIGNNGEGKSNLLEAVELLGSLHSNRCKNDHDL 79 Query: 65 TRIGSPSFFSTFARVEGMEGLADISI-------------KLETRDD--RSVRCLQINDVV 109 R G S ST + + E +++I KLE + D S+RC+ + + Sbjct: 80 IRQGHSS--STISAIIDSEDSIELTIQEHGGRQAKRNGKKLERQHDLLNSLRCVGFSSLD 137 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 +++V G RR++LD++V ++P + + +++RL++ R Sbjct: 138 LQLV--------------------RGEPALRRQWLDKVVIKLEPVYNELLNNYKRLLKQR 177 Query: 170 NRLLTEGYFDSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENF 221 N+LL + +++ + + Q++ + +I+ R + L L + + Q +E Sbjct: 178 NQLLRKDISNNNRNELLDIFDQQLSLISARIHRRRYRALKRLEPLAVYWQQQLSKGREEL 237 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 + S F+ G+ + C + + +L R+ + + R +GPHR ++ + + Sbjct: 238 ALVYKSGISFI-GEESEDSC--RNKLLMQLKKQRQNELYTYRCTVGPHRDEIDI-MLNGM 293 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 +GS G+Q+ ++ + +A LI+ PIL+LD++ A LD ++ L + + Sbjct: 294 FARYYGSAGQQRTTVLALKIAELELINQVHKDPPILILDDVMAELDSGRQELLLKTMG-A 352 Query: 342 GSQIFMTGTDKSVF 355 Q ++ T+ +F Sbjct: 353 NYQCLISSTNLDIF 366 >gi|169335586|ref|ZP_02862779.1| hypothetical protein ANASTE_02001 [Anaerofustis stercorihominis DSM 17244] gi|169258324|gb|EDS72290.1| hypothetical protein ANASTE_02001 [Anaerofustis stercorihominis DSM 17244] Length = 366 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 87/360 (24%), Positives = 164/360 (45%), Gaps = 17/360 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + I+ FRN + F+ ++ IF G N GKTN LEA+S G R + ++ + Sbjct: 3 IENIEITNFRNIEKINTSFNKKYNIFYGKNAQGKTNFLEALSLTLNGMSHREKNTSNFIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G FS + E D IK +D R +IN I+ EL + + Sbjct: 63 NGED--FSLISAKVIKEDDIDTFIKCVIKDKRKY---EINSSPIKSRTELLREYNLVMFT 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183 P +I G +RR+FL+ + I P + + + + ++ RN +L ++ SS Sbjct: 118 PEDLKIIKGYPADRRKFLNESISHIFPSYHSALRKYNKALKQRNAILRDYSKRNIASSLL 177 Query: 184 SSIEAQMAELG---VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + +G +KI I ++ I +++ + + V K+ S + K Sbjct: 178 EVYDETLYTIGSDIIKIRINVLKKIEKITNELNKEVSKDEEVRFFYSSNVLENAK---DL 234 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +K Y K L + R D M T IG H D+ + + + T S G+Q+ + + + Sbjct: 235 KDIKSLYKKALKNSRNDDLMKGSTTIGVHHDDINI-FLNDLDTKKFASQGQQRSISLCMK 293 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ +L+ + PI+LLD++ + LD+ ++ + ++ D +Q F+T + S + +++ Sbjct: 294 LSLIKLLHDKFDDYPIVLLDDVMSDLDKFRQKQILNLIKD--TQSFITCVNYSFLEDIDD 351 >gi|270289889|ref|ZP_06196115.1| DNA replication and repair protein recF [Pediococcus acidilactici 7_4] gi|270281426|gb|EFA27258.1| DNA replication and repair protein recF [Pediococcus acidilactici 7_4] Length = 374 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 23/358 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRNYA L + F + + +G+N GKTN+LE+I FL+ R R ++ D+ Sbjct: 3 LKTLELHNFRNYADLSVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTSNDRDL-- 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 IG + + ARV G +E + ++N + + + L + Sbjct: 61 IG---WKAKEARVLGTIQKEHTQTPVEIDISSKGKNAKVNHIEQGRLSQYVGQLNVILFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS----W 182 P I G RRRF+D + ++ + +++ RN+ L + D + Sbjct: 118 PEDLSIVKGSPAVRRRFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYLKQLQIDPKGDQVY 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDGK 235 + Q+A G +I R++ + L I + ++K F ++ L Sbjct: 178 LDVLSDQLAAYGAEIIFQRIQFLKKLEEWSQAVHEEISQGLEKLTFQYVS-PLKKDETTS 236 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + + AL+E K R+ + +TL+GPH D+ K ++ GS G+Q+ Sbjct: 237 TETIYTALQELLKKH----RQRELQQGKTLVGPHLDDVRFIVNGKNVS-TFGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA L+ TG P+LLLD++ + LD+ ++ L + + Q F+T T S Sbjct: 292 ALSVKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQN-KVQTFITTTSLS 348 >gi|255027379|ref|ZP_05299365.1| recombination protein F [Listeria monocytogenes FSL J2-003] Length = 340 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 83/343 (24%), Positives = 149/343 (43%), Gaps = 45/343 (13%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG S+ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 A++ + + R + I L + + + + LK EY Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228 Query: 251 L-FDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + +G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 ITLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 + + I LA LI TG P+LLLD++ + LD+ +++ L Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLL 330 >gi|116871427|ref|YP_848208.1| recombination protein F [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460552|sp|A0AEJ1|RECF_LISW6 RecName: Full=DNA replication and repair protein recF gi|116740305|emb|CAK19423.1| DNA replication and repair protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 370 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 46/364 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG ++ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPMLLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249 A++ + + R + I L + + + + LK EY A Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228 Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +G +KM+S+ +R TL+GPHR D + Y + GS G+Q Sbjct: 229 VTLNGDDPDTWKADLLQKMESIKQREIDRGVTLVGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFD 356 S D Sbjct: 347 SGID 350 >gi|305681550|ref|ZP_07404356.1| DNA replication and repair protein RecF [Corynebacterium matruchotii ATCC 14266] gi|305658710|gb|EFM48211.1| DNA replication and repair protein RecF [Corynebacterium matruchotii ATCC 14266] Length = 382 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 162/358 (45%), Gaps = 27/358 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L++ +FR++ + T+FVG NG GKTN++EAI +++ R A A + R Sbjct: 3 IRELSLRDFRSWPHCHVRLGPGITLFVGRNGHGKTNLVEAIGYVAHLGSHRVAQDAPLVR 62 Query: 67 IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G P+ S A + E A + I + S+ ++N EL +R Sbjct: 63 HGQPNARVSATAVRDDRELTAHLLINASGANQASINRTRLNS-----PRELLGVVRTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYF 178 P + G ERRR+LD ++ PR D+E+++R R LL GY Sbjct: 118 CPEDLALVRGEPAERRRYLDNIIATRRPRLAGVKADYEKVLRQRTTLLKTSSAALRRGYS 177 Query: 179 --DSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSLTG 230 D S + +AQ+A G ++ AR ++ L L+ E + E+ P HI T Sbjct: 178 GDDGSLATLDVWDAQLARQGAQMIAARRALVTELDPLVHEAYAGIAPESRPAHIAYEST- 236 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D D + ++ +L R + R+L+GPHR DL++ D S G Sbjct: 237 VPDVGEDPAL--IEAAMLAELGRMRPKEIDRGRSLVGPHRDDLVITLGDVPAK-GFASHG 293 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 E +++ + L +L+ G P+L+LD++ A LD +R L + D+ Q+ +T Sbjct: 294 ETWSMVLALRLGEFQLL-RADGTDPVLILDDVFAELDALRRERLVHLTQDV-EQVLIT 349 >gi|261213261|ref|ZP_05927543.1| DNA recombination and repair protein RecF [Vibrio sp. RC341] gi|262402080|ref|ZP_06078644.1| DNA recombination and repair protein RecF [Vibrio sp. RC586] gi|260837535|gb|EEX64238.1| DNA recombination and repair protein RecF [Vibrio sp. RC341] gi|262351726|gb|EEZ00858.1| DNA recombination and repair protein RecF [Vibrio sp. RC586] Length = 363 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 87/366 (23%), Positives = 170/366 (46%), Gaps = 20/366 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P F R+ +D + + + + D S ++I + + +L + L + + Sbjct: 66 PELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184 P + + +RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R +N L S + E + + P + L + + DQ + ++ Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ ++ D T GP+++DL + + S G+ K+++ + +A Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351 Query: 364 FMRISN 369 +++ Sbjct: 352 TFHVAH 357 >gi|253573851|ref|ZP_04851193.1| DNA replication and repair protein RecF [Paenibacillus sp. oral taxon 786 str. D14] gi|251846328|gb|EES74334.1| DNA replication and repair protein RecF [Paenibacillus sp. oral taxon 786 str. D14] Length = 370 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 86/350 (24%), Positives = 155/350 (44%), Gaps = 19/350 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +RNY +L L + +G N GKTN+LEA+ L+ + R ++ GS Sbjct: 6 LSLQNYRNYGTLTLDAFGAVNLIIGRNAQGKTNLLEALFVLALTKSHRTGKDKELIAFGS 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + A VE G + ++L + ++ ++N + R + + + + P Sbjct: 66 DHALVS-AEVEKKYGPVQLELRLSPQGKKA----KLNGLEQRKLSDFIGAMNVVMFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI--- 186 I G RRRFLD + + P + + +++++ RN LL + + ++ Sbjct: 121 LEIVKGTPGVRRRFLDMEIGQVQPSYLYHLQQYQKVLIQRNNLLKQAWGAGPEIKTMLEI 180 Query: 187 -EAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 Q+ + GVKI R + I+ L + I E + +KL+ ++ Sbjct: 181 WNEQLVQHGVKIIKKRKQFISKLQKWAEQIHEGITGGG-ETLKLAYLPSFGTAEEEDEAV 239 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIF 300 L +++ KL + + TL GPHR DL I++ + + +GS G+Q+ + + Sbjct: 240 LLQQFMIKLSQMKDQEIRRGMTLCGPHRDDLSFIINGNEAQV---YGSQGQQRTTALSLK 296 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LA LI G PILLLD++ + LD ++ L Q F+T T Sbjct: 297 LAEIELIHEEIGEYPILLLDDVLSELDPYRQTQLIETFQS-KVQTFITAT 345 >gi|297558989|ref|YP_003677963.1| DNA replication and repair protein RecF [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843437|gb|ADH65457.1| DNA replication and repair protein RecF [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 377 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 92/356 (25%), Positives = 156/356 (43%), Gaps = 21/356 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +++FR+Y + ++FVG NG GKTN++EAI +++ R +S + R Sbjct: 3 VSHLQLADFRSYREALVEMGPGVSVFVGANGQGKTNLVEAIGYVATLGSHRVSSDTPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+P R + + + + LE R+ R +IN E+ LR Sbjct: 63 QGAP---RAIVRAKVVRDERSMVVDLELNPGRANRA-RINQAPAGRPREVLGILRTVLFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---------Y 177 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 119 PEDLALVKGDPGERRRFLDDLLVARAPRMAGVRSDYDRVLKQRNALLKSASGRMFRQRSA 178 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDG 234 D S ++ +AE G ++ AR+E++ L I E + P + +G + Sbjct: 179 PDLSTLEVWDSHLAETGAELLAARLELVEELRPRIAEAYAGLTDSGGPAVPDYRSGAVPE 238 Query: 235 KFDQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + L E + + R + +L+GPHR DL++ + S GE Sbjct: 239 GVEPPTGRPQLVETLRAAMAEARDRELQRGVSLVGPHRDDLVLRLGGMPAK-GYASQGES 297 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + + LA L+ + G P+L+LD++ A LD ++R L V D Q+ +T Sbjct: 298 WSYALSLKLAAFDLL-RSDGDDPVLILDDVFAELDSERRRRLAERVGD-AEQVLVT 351 >gi|329767181|ref|ZP_08258708.1| hypothetical protein HMPREF0428_00405 [Gemella haemolysans M341] gi|328836848|gb|EGF86495.1| hypothetical protein HMPREF0428_00405 [Gemella haemolysans M341] Length = 378 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 92/386 (23%), Positives = 174/386 (45%), Gaps = 36/386 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK L + FRNY S+ + + VG+N GKTNI+E+I L+ GR +R S ++ Sbjct: 1 MRIKSLKLLYFRNYLSMNIDVHPSLNVLVGNNANGKTNIIESIFCLALGRSYRTKSDSEC 60 Query: 65 TRIG-SPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 G + + S + ++ + IS K ++ V+ ++ D V ELN Sbjct: 61 IMFGETATAMSCVVNKNDKNLDIMLGISNKGKSAKIAGVKKTKLTD----FVGELN---- 112 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------ 175 + P ++ G RR F++R + + + + ++ L++ RN L + Sbjct: 113 VVLFSPEDLQLVKGSPSLRREFINREFYQFSRIYHKYYLMYQHLLKQRNSYLKDMRKNPK 172 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL----IMEYVQKENFPHIK------ 225 ++ ++ +Q+A++ + I RV + +S L +M + I+ Sbjct: 173 DEMSLAYLETLTSQLAKVAIYITKERVSFVQDISELTYKNMMNISNGQESLKIRYKSSVL 232 Query: 226 --LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 L++ D F + L + KK FD D M T IGPH+ DL Y + Sbjct: 233 ESLNIADITDEGFTEE--NLTKVMMKKFFD----DIMRGSTKIGPHQDDLEF-YINDLDA 285 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 + S G+Q+ +++ + LA + + TG P+LLLD++ + LD++++ L + + Sbjct: 286 KMYASQGQQRSIVLSLKLAEINYLKSKTGTYPVLLLDDVLSELDKNRQLKLLDAINENVQ 345 Query: 344 QIFMTGTDKSVFDSLNETAKFMRISN 369 T + + + L + AK +I N Sbjct: 346 TFITTPSISDIKEDLLKKAKVFKIEN 371 >gi|325124859|gb|ADY84189.1| DNA repair and genetic recombination protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 381 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 23/358 (6%) Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ G F Sbjct: 9 SGFRNLAPLDLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREMIAFGQ-DF 67 Query: 73 FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 S RV + D+ I + + + +N V + + HL P + Sbjct: 68 ASLAGRVHKRQLDLDLRIVISKKG----KSAWVNRVEQARLSKYVGHLNAILFSPEDMEL 123 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188 G RRRF+D I+P + + +L++ RN L + D + Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQVLLGVLTE 183 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 Q+A ++ R + L+ E + + +L + K + + + Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242 Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302 +KL D D RR T +GPHR DL K AH S G+Q+ + + + LA Sbjct: 243 QKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLA 299 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 +LI TG PILLLD++ + LD++++ AL + +Q F+T TD DS+++ Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QTQTFITTTD---LDSISQ 353 >gi|226303493|ref|YP_002763451.1| DNA replication and repair protein RecF [Rhodococcus erythropolis PR4] gi|259563669|sp|C0ZLE4|RECF_RHOE4 RecName: Full=DNA replication and repair protein recF gi|226182608|dbj|BAH30712.1| DNA replication and repair protein RecF [Rhodococcus erythropolis PR4] Length = 409 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 102/385 (26%), Positives = 173/385 (44%), Gaps = 34/385 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++ +FR++ SL L T+F+G NG GKTN+LE++ +LS R ++ A + R Sbjct: 3 VRRFSLRDFRSWDSLTLDLTPGTTVFLGSNGHGKTNVLESLGYLSTLSSHRVSTDAPMIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 GS S F+ V +++I +E + +S R +IN R E+ L+ Sbjct: 63 SGSASAFAGATVVNNGR---ELTIDVELIEGKSNRA-RINQSPTRRPREVLGILQSVMFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----------TEG 176 P + G +RRR+LD ++ + PR D+++++R R+ LL + G Sbjct: 119 PEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDKVLRQRSALLKTAGAALRRGSRG 178 Query: 177 YFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIME---YVQKENFP---HIKLS 227 + S++E +A G ++ R+E+++ L+ + E + E+ P K S Sbjct: 179 GESDNVLSTLEVWDGHLAAHGAQLLAGRLELVHDLAPHLAESYRSIAPESRPASIRYKSS 238 Query: 228 LTGFLDGKFDQS--------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 L LD +F L+E + +L R + L+GPHR DL + D Sbjct: 239 LGSSLDPEFTDPARISGIDDVAYLEERFHLELAQMRSKEIDRGVCLVGPHRDDLELVLGD 298 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 S GE + + LA L+ G P+L+LD++ A LD +R AL + Sbjct: 299 SPAK-GFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRRRRRALATVAA 356 Query: 340 DIGSQIFMTGTDKSVFDSLNETAKF 364 + + V D L E AKF Sbjct: 357 TAEQVLITAAVPEDVPDEL-EAAKF 380 >gi|197116405|ref|YP_002136832.1| DNA replication/repair protein RecF [Geobacter bemidjiensis Bem] gi|226737801|sp|B5E7P8|RECF_GEOBB RecName: Full=DNA replication and repair protein recF gi|197085765|gb|ACH37036.1| DNA replication and repair protein RecF [Geobacter bemidjiensis Bem] Length = 364 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 87/353 (24%), Positives = 159/353 (45%), Gaps = 21/353 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L ++ FRN ++ L + +F G+NG GKTN+LE+I L+ + F++A A++ Sbjct: 1 MKLIKLKLASFRNLQNIELAPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQARNAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +F FA V+G + ++ ++ + +++ ++ +D+ +L + Sbjct: 61 I-----AFAGEFALVKGTVERDQVRREIAVLIEKQGKKAKVDAKLMTRLDDFFGNLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSW 182 P + G RRR+LDR VF D + D+ ++++ RN LL E W Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLGYLTAYHDYAKILKNRNALLKVNETTGIEVW 175 Query: 183 CSSIEAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q A L ++ A ++ I L E + I+ L G D+ Sbjct: 176 TEQL-VQAALLVIERRKAYLDRIGKLLQGFYSEISGNDETVQIEYRLHG-----VDERLL 229 Query: 242 ALKEEYAKKLFDGRKMDSMSRR----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 A E+ A L + + R T IGPHR DL ++ S G+Q+ ++ Sbjct: 230 A--EDPAGALNQALRAHAAEERRRGTTAIGPHRDDLYFGLNGRSAR-QFASQGQQRSFVL 286 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + +A I+ P+LLLD++++ LD ++ L + Q+F+T T Sbjct: 287 ALKMAEIEHITRCFEAPPVLLLDDMTSELDRERNRNLMEFLKKREMQVFITTT 339 >gi|170724373|ref|YP_001758399.1| recombination protein F [Shewanella woodyi ATCC 51908] gi|226737835|sp|B1KCX5|RECF_SHEWM RecName: Full=DNA replication and repair protein recF gi|169809720|gb|ACA84304.1| DNA replication and repair protein RecF [Shewanella woodyi ATCC 51908] Length = 365 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 101/362 (27%), Positives = 165/362 (45%), Gaps = 25/362 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I FRN +S +L + G NG GKT++LEAI FL GR FR V + Sbjct: 6 LHIETFRNISSAQLHPSDGLNLIYGQNGSGKTSVLEAIYFLGMGRSFRSHLSQRVIQ-HQ 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + E + I ++ + V+ IN I+ + L + L I + P S Sbjct: 65 DDKLTLFANLSLGEQESKIGLRRFRSGETEVK---INGDKIKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCSSI 186 +F G RR+F+D F D + +R+++ RN+LL Y + Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDKSFHSAWANVKRILKQRNQLLKNQVSYSQIQFWDKE 180 Query: 187 EAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +EL I V+ +N L +I+E++ + +K+S T D K D F L E Sbjct: 181 LVRYSELVTLIRKEYVDSLNEQLKGIIVEFLPQ---VEVKVSFTRGWDSKTD--FGQLLE 235 Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + + G T GPH++DL + + A S G+ K+++ + +A Sbjct: 236 TQYLRDVAAG--------NTGSGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363 +L+ T I L+D++ + LD R L + + D G+QIF+T D ++ DSL Sbjct: 287 KLLKQQTDKNSIYLVDDLPSELDAKHRQLLLQQLMDTGAQIFVTAIDPAAIVDSLTTPPS 346 Query: 364 FM 365 M Sbjct: 347 KM 348 >gi|315225438|ref|ZP_07867252.1| recombination protein F [Capnocytophaga ochracea F0287] gi|314944711|gb|EFS96746.1| recombination protein F [Capnocytophaga ochracea F0287] Length = 374 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 92/358 (25%), Positives = 158/358 (44%), Gaps = 36/358 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ ++N S VF FVGDNGVGKTN+L+AI L + + S R Sbjct: 4 LKQISVVNYKNILSQAYVFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQNVR 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---------RVVDELN 117 G F +EG + E R+++ V L+ + R+ D + Sbjct: 64 HGEE-----FYLIEG-------QFRQEEREEQIVCSLKKGQKKVMKHNGKAYERLADHIG 111 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-- 175 K+ + D I G S RR+FLD ++ D + ++ + R + RN LL + Sbjct: 112 KYPMVLISPSDRDLIVEG-SETRRKFLDSVISQTDRAYLELLLRYNRTLLQRNTLLKQMA 170 Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 G F + Q+A LG I R + + E + ++SL Sbjct: 171 EGGVFSLETLHIYDEQLAPLGQHIYEKRRAFMKEFLPIFSEQYAYISGGKERVSL----- 225 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 ++D S + + A +L + + D ++ T G H+ DL+ + + +GS G+QK Sbjct: 226 -QYDSSLH--QSDLATQLAENTERDRSAQYTTAGIHKDDLLFE-IEGYPMKKYGSQGQQK 281 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGT 350 L+ + L+ ++ + G PI+LLD+I LD+ + L ++VT Q+F+T T Sbjct: 282 SFLIALKLSQFEVLKQSLGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITDT 339 >gi|192361120|ref|YP_001980527.1| recombination protein F [Cellvibrio japonicus Ueda107] gi|226737773|sp|B3PEM4|RECF_CELJU RecName: Full=DNA replication and repair protein recF gi|190687285|gb|ACE84963.1| RecF protein [Cellvibrio japonicus Ueda107] Length = 365 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 171/376 (45%), Gaps = 29/376 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + RN S+ + ++ + G NG GKT++LEAI+ L+ GR FR + + Sbjct: 6 LRVHHLRNLESVDIEPSSRVNLIYGLNGSGKTSLLEAINVLALGRSFRSHKHKPLISHQQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F + F RV + A+I I ++ R+ + L+ N + + +L L + + Sbjct: 66 LAF-TIFGRVLADDA-AEIPIGIQ-RNQQGEVMLKANGANVGSIADLAIFLPVQVINSDT 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + G RR+F+D +VF ++ + + +R ++ RN LL D S+ + + Sbjct: 123 FLLLEGSPKVRRQFMDWLVFHVEHQFYPQWKSLQRCLKHRNSLLRRDRIDPFELSTWDQE 182 Query: 190 MAELGVKINIARVE----MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +L +I+ R + + L+ E+V E L+ + + + K+ Sbjct: 183 LVQLTEQIHCFREQCMALFVPVFEQLLQEFVVLEG-----------LELHYQRGWDKHKD 231 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 YA+ L D + D T G HR++L ++ D A + S G+QK+++ + +A Sbjct: 232 -YAQVLQDSFERDKRLGVTHAGSHRAELRITLNGQDAAEIL---SRGQQKLLVCALKIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-----FDSL 358 + S TG I L+D++ A LDE R L + + +Q+F+TG ++ D Sbjct: 288 GLVFSQVTGRKCIYLVDDLPAELDEQHRQRLVDWLYRMDTQVFITGVERQALLAGWLDKP 347 Query: 359 NETAKFMRISNHQALC 374 T K + + + C Sbjct: 348 EITPKMFHVEHGRVSC 363 >gi|332997866|gb|EGK17474.1| DNA replication and repair protein recF [Shigella flexneri K-272] gi|333013661|gb|EGK33026.1| DNA replication and repair protein recF [Shigella flexneri K-227] Length = 357 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 161/364 (44%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +PR + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPRFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|313676601|ref|YP_004054597.1| DNA replication and repair protein recf [Marivirga tractuosa DSM 4126] gi|312943299|gb|ADR22489.1| DNA replication and repair protein RecF [Marivirga tractuosa DSM 4126] Length = 367 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 85/359 (23%), Positives = 170/359 (47%), Gaps = 37/359 (10%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++K++ + +++F+NY F F+G NG+GKTN+L+AI +L+ F ++++ Sbjct: 3 KMKLQNIRLAQFKNYPQANFSFVDGINCFLGRNGIGKTNLLDAIYYLA----FTKSAFNA 58 Query: 64 VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH- 119 + + + +FFS A E + ++ + + + VR + ++L++H Sbjct: 59 IDKDNILHEEAFFSIKANFEVEDKNIEMLCAVRLGEKKVVRWGG------KEYEKLSEHI 112 Query: 120 --LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174 L + +VP I S RR+F D ++ +D + + ++++ L++ RN LL Sbjct: 113 GKLPLVMIVPQDTDIVREASEMRRKFFDNLLCQLDQEYLKLLVNYNHLLKQRNALLKSFL 172 Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGF 231 + F + + + M L +KI+ R +++ + E+ + +N + ++ Sbjct: 173 EKNRFSADQLAPYDELMIPLAMKISDERNKLMENFLPIFQEFYKDLSDNQEEVAINYDTR 232 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + F F K ++ K G RT +G H+ D + K + GS G+ Sbjct: 233 VTKSFQSDF---KGQHQKDFRQG--------RTTMGIHKDDYVFLSEGKPVK-KFGSQGQ 280 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMT 348 QK ++ + LA L+ +T P+LLLD+I LD+ + L +++ D G QIF+T Sbjct: 281 QKSFVIALKLAQFELLKSTKNQKPLLLLDDIFDKLDDKRIAYLLKMMADGRFG-QIFLT 338 >gi|331700399|ref|YP_004397358.1| DNA replication and repair protein recF [Lactobacillus buchneri NRRL B-30929] gi|329127742|gb|AEB72295.1| DNA replication and repair protein recF [Lactobacillus buchneri NRRL B-30929] Length = 372 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 90/371 (24%), Positives = 162/371 (43%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + + FRNY L F +F+G+N GKTN+LEAI L+ R R + ++ Sbjct: 1 MKLTEIELHNFRNYVDQTLEFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTNNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + R++ G I + L ++ R+ ++N + + L + Sbjct: 61 INWNSQT-AQIKGRLQKRLGTVPIELDLGSKGKRA----KVNHLEQAKLSTYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + R+ ++++++ RNR L + ++ D Sbjct: 116 FAPEDLSIVKGAPQVRRRFMDMEFAQMSNRYLYNSTQYKKILKQRNRYLKDLHYKRQKDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q++ G +I R++++ L + + +L+ + DQ Sbjct: 176 VYLDVLSDQLSAYGAEIVYQRLQLLKQLEKFAQNVHSEISQGKEQLAFDYHTTVEADQLG 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S ++ + K + + + TLIGP R DL K + + GS G+Q+ + Sbjct: 236 SVESIYQSLLKHFAAIKDKEILRSTTLIGPQRDDLHFVINGKEVQ-SFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDS 357 + LA L+ T PILLLD++ + LD+ ++ L + D Q F+T T S V Sbjct: 295 VKLAEIDLMKEQTDEYPILLLDDVLSELDDFRQTHLLTAIQD-KVQTFLTTTSLSGVQQE 353 Query: 358 LNETAKFMRIS 368 L + RIS Sbjct: 354 LLTNPRIFRIS 364 >gi|312621131|ref|YP_004022744.1| DNA replication and repair protein recf [Caldicellulosiruptor kronotskyensis 2002] gi|312201598|gb|ADQ44925.1| DNA replication and repair protein RecF [Caldicellulosiruptor kronotskyensis 2002] Length = 353 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 90/349 (25%), Positives = 154/349 (44%), Gaps = 23/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + + FR Y F + + VG+N GKT++LEA+ F G+ F+ D+ Sbjct: 1 MKIKSIYVENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCMCGKSFKS---RDI 57 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 I SF + ++E + + D + D+++ + + IND I+ + EL + Sbjct: 58 DAINFDSF---YFKLEMLAEVGDTEYNVFCYVDKALDKRIMINDKKIKKLSELISTFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RRRFLD V + P + ++ R + RN L + Y Sbjct: 115 FFEPDATELIKHQPKLRRRFLDMEVTKLYPYMTKVYSEYHRALLSRNAFL-KSYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++LG I R E+IN LS ++ + + L+ K+ S A Sbjct: 174 DVYDMQISQLGFLIFQKRQEVINKLS------IEAQKIFSLVFENKSMLELKYMPSIIAS 227 Query: 244 KE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + EY K++ D T G HR D + DK I S G+ K+ + + LA Sbjct: 228 NDKEYYKEIKKNIDKDLSFGYTTKGVHRDDFEI-LIDKKPAINFASEGQIKLAAISVVLA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + L P+L+LD++ + LD KR L + ++ S F+T + Sbjct: 287 TSLLYPE-----PVLILDDVFSELDSFKRKNLVKFISQYQS--FVTSAE 328 >gi|149280279|ref|ZP_01886401.1| DNA replication and repair protein RecF, ABC family ATPase [Pedobacter sp. BAL39] gi|149228968|gb|EDM34365.1| DNA replication and repair protein RecF, ABC family ATPase [Pedobacter sp. BAL39] Length = 367 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 95/357 (26%), Positives = 154/357 (43%), Gaps = 34/357 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + + F+NY+ + F FVG+NG GKTN+L+AI +L +G+ + + Sbjct: 3 LKNITLLNFKNYSDANISFSKTVNAFVGNNGAGKTNLLDAIHYLCLCKGYFNPIDSQQIK 62 Query: 67 IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F F R E E I+ ++ + + + + D+L H+ + Sbjct: 63 TAEDLFLIQGDFDRKEKNEK---ITCGVKRNQKKQFKRNK------KEYDKLASHIGLFP 113 Query: 125 LV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GY 177 LV P + S ERR+F+D ++ D + +I + R ++ RN LL + Sbjct: 114 LVMISPYDTNLIMEGSEERRKFMDNVISQTDGSYLDELIFYNRHLQNRNALLKQMSITRS 173 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGK 235 +D S Q+ G KI R + + L +Y + E+ + L L Sbjct: 174 YDPSLLEIYNDQLVASGNKIYAKRQQFMTEFIPLFDQYYRFLTEDKEEVNLQYQSQLA-- 231 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 D SF L L + D + RT G H+ +L+ + GS G+QK Sbjct: 232 -DVSFEQL-------LLQSIEKDKVLERTTTGIHKDELVFTIRTTPLK-KFGSQGQQKSF 282 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTGT 350 L+ + LA + GF P+LLLD+I LDE + L +V+ D G QIF+T T Sbjct: 283 LIALKLAQYAYLQRYKGFKPLLLLDDIFDKLDEFRMQKLMEMVSHDDFG-QIFITDT 338 >gi|315500822|ref|YP_004079709.1| DNA replication and repair protein recf [Micromonospora sp. L5] gi|315407441|gb|ADU05558.1| DNA replication and repair protein RecF [Micromonospora sp. L5] Length = 376 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 94/376 (25%), Positives = 158/376 (42%), Gaps = 35/376 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y + + + + VG NGVGKTN++EA+ +++ R A+ A + R Sbjct: 3 VRRLELVDFRSYERVGVDLEPGPNVLVGANGVGKTNLVEALGYVATLDSHRVATDAPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+ S A V EG E + ++LE ++ R R D L LR+ Sbjct: 63 MGAASAVIRCAVVHEGRE----LLVELEIVPGKANRARLGRSPARRARDVLGA-LRLVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178 P + G ERRR+LD ++ PR+ D+ER+++ RN LL Y Sbjct: 118 APEDLELVRGDPAERRRYLDDLLVTRQPRYAGVRADYERVVKQRNALLRTSYLARKTGGT 177 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----------PHIK 225 D S + +A +A+ G + R+E++ AL+ + + P ++ Sbjct: 178 RGGDLSTLAVWDAHLAQHGADLLAGRLELVAALTPHVAKAYDAVAAGRGAAGIAYRPSVE 237 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 L G ++ A + TL+GPHR DL + Sbjct: 238 LPEPGADRAALAEALAAALTANRAAEIE-------RGTTLVGPHRDDLALTLGPLPAK-G 289 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 + S GE + + LA L+ G P+L+LD++ A LD +R L +V + Sbjct: 290 YASHGESWSYALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRERLAELVGGASQLL 348 Query: 346 FMTGTDKSVFDSLNET 361 D V +L T Sbjct: 349 VTCAVDDDVPATLRGT 364 >gi|114565579|ref|YP_752733.1| DNA repair and genetic recombination protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122319237|sp|Q0B0Z2|RECF_SYNWW RecName: Full=DNA replication and repair protein recF gi|114336514|gb|ABI67362.1| DNA replication and repair protein RecF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 365 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 98/362 (27%), Positives = 164/362 (45%), Gaps = 15/362 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI I +FRN + IF G+N GKTNILEA+ +L+ G FR + Sbjct: 1 MKILKFQIKDFRNLKKIEYQPSPGLNIFYGENAQGKTNILEALYYLATGNSFRSNKEKTL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S AR E + D SI + +IN R LRI Sbjct: 61 ISYESSSL-QVQARYNHQERIIDSSITYGL----DGKVFRINKK--RASYNHTDRLRIIL 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G +RR FLD ++ I + ++ ++ ++++ RN LL + +S + Sbjct: 114 FSPDDLYLVKGAPYKRRFFLDFLLGQISNEYLFKLDNYRKILKKRNLLLKKEETNSRSFA 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFP---HIKLSLTGFLD-GKFDQS 239 I +L ++ I+R+ +IN L I E Y Q N I+ +L+ +D GK + Sbjct: 174 IINDIFMDLAAQLLISRLNLINVLDEAIQEIYPQINNDGGQLKIRYALSFPVDSGKIN-- 231 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 LK+ K++ + + + TL+GPH D+ + Y ++ + S G+Q+ +++ + Sbjct: 232 LDILKDSLKKQVESETEKEKKRKTTLLGPHLDDMHI-YLNEQMARLFASQGQQRNIVICL 290 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA GF PI LLDE+ A LD+ + N L + + Q F+T F+ ++ Sbjct: 291 KLAEIMTFRKIKGFFPIFLLDEVLAELDDSRSNKLLKYLAQSPFQSFLTSVKLEKFEVMD 350 Query: 360 ET 361 + Sbjct: 351 AS 352 >gi|282898562|ref|ZP_06306550.1| RecF protein [Cylindrospermopsis raciborskii CS-505] gi|281196430|gb|EFA71339.1| RecF protein [Cylindrospermopsis raciborskii CS-505] Length = 369 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 168/375 (44%), Gaps = 50/375 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + FRNY ++ F A TI VG+N GK+N+LE++ L+ R R D + Sbjct: 3 LQSLELRHFRNYQEQKVEFTAPKTILVGNNAQGKSNLLESVELLATLRSHRLGKDRDFIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ A +E + G+ D+++ L RSV IN +R + + ++ Sbjct: 63 EGA-EIAQVSAILERITGVNDLTLHLRRNGRRSV---AINGEKVR------RQMDFLGIL 112 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 +++ FS L +E RR +LD ++ ++P + + + +++R RN L Sbjct: 113 NAVE--FSSLDLELVRGSPAIRRTWLDTLLVQLEPLYAHILHQYNQVLRQRNAFLKTSQQ 170 Query: 179 DS-----SWCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPH 223 S + +AQ+ G K+ R I L+ + E ++ P+ Sbjct: 171 KGIKNHDSELAIWDAQLVTTGTKVMRRRNRAIQRLAPIATNWHSSISGKTEKLEINYMPN 230 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 + + +D + Q F ++++ +L G TL+GPHR D I ++ Sbjct: 231 VPI----LIDEELPQFFLDRVQQHSPIELHRG--------TTLVGPHR-DEIELIVNRTP 277 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S G+Q+ +++ + LA +LI P+LLLD++ A LD ++N L + D Sbjct: 278 ARQYASQGQQRTLVLALKLAELQLIEEVVNDTPLLLLDDVLAELDLSRQNQLLDAIQD-R 336 Query: 343 SQIFMTGTDKSVFDS 357 Q +T T FD+ Sbjct: 337 FQTLITTTHLGAFDA 351 >gi|302864512|ref|YP_003833149.1| DNA replication and repair protein RecF [Micromonospora aurantiaca ATCC 27029] gi|302567371|gb|ADL43573.1| DNA replication and repair protein RecF [Micromonospora aurantiaca ATCC 27029] Length = 377 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 94/376 (25%), Positives = 158/376 (42%), Gaps = 35/376 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y + + + + VG NGVGKTN++EA+ +++ R A+ A + R Sbjct: 3 VRRLELVDFRSYERVGVDLEPGPNVLVGANGVGKTNLVEALGYVATLDSHRVATDAPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+ S A V EG E + ++LE ++ R R D L LR+ Sbjct: 63 MGAASAVIRCAVVHEGRE----LLVELEIVPGKANRARLGRSPARRARDVLGA-LRLVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178 P + G ERRR+LD ++ PR+ D+ER+++ RN LL Y Sbjct: 118 APEDLELVRGDPAERRRYLDDLLVTRQPRYAGVRADYERVVKQRNALLRTSYLARKTGGT 177 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----------PHIK 225 D S + +A +A+ G + R+E++ AL+ + + P ++ Sbjct: 178 RGGDLSTLAVWDAHLAQHGADLLAGRLELVAALTPHVAKAYDAVAAGRGAAGIAYRPSVE 237 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 L G ++ A + TL+GPHR DL + Sbjct: 238 LPEPGADRAALAEALAAALTANRAAEIE-------RGTTLVGPHRDDLALTLGPLPAK-G 289 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 + S GE + + LA L+ G P+L+LD++ A LD +R L +V + Sbjct: 290 YASHGESWSYALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRERLAELVGGASQLL 348 Query: 346 FMTGTDKSVFDSLNET 361 D V +L T Sbjct: 349 VTCAVDDDVPATLRGT 364 >gi|254291125|ref|ZP_04961922.1| recF protein [Vibrio cholerae AM-19226] gi|150422970|gb|EDN14920.1| recF protein [Vibrio cholerae AM-19226] Length = 363 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 170/366 (46%), Gaps = 20/366 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P F R+ +D + + + + D S ++I + + +L + L + + Sbjct: 66 PELF-VHGRICEHSLTSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184 P + + +RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R +N L + + E + + P + L + + DQ + ++ Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ ++ D T GP+++DL + + S G+ K+++ + +A Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351 Query: 364 FMRISN 369 +++ Sbjct: 352 TFHVAH 357 >gi|289433378|ref|YP_003463250.1| DNA replication and repair protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169622|emb|CBH26156.1| DNA replication and repair protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 370 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 46/364 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG ++ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRIEKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDPLLLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249 A++ + + R + I L + + + + LK EY A Sbjct: 186 ADVAINLTKRRADFIQKLEAY-----------------AAPIHSQISRGLETLKIEYKAS 228 Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 VTLAGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFD 356 S D Sbjct: 347 SGID 350 >gi|116513232|ref|YP_812138.1| recombination protein F [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275997|sp|Q04CX2|RECF_LACDB RecName: Full=DNA replication and repair protein recF gi|116092547|gb|ABJ57700.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 381 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 158/358 (44%), Gaps = 23/358 (6%) Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ G F Sbjct: 9 SGFRNLAPLNLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREMIAFGQ-DF 67 Query: 73 FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 S RV + D+ I + + + +N V + + HL P + Sbjct: 68 ASLAGRVHKRQLDLDLRIVISKKG----KSAWVNRVEQARLSKYVGHLNAILFSPEDMEL 123 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188 G RRRF+D I+P + + +L++ RN L + D + Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQVLLGVLTE 183 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 Q+A ++ R + L+ E + + +L + K + + + Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242 Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302 +KL D D RR T +GPHR DL K AH S G+Q+ + + + L+ Sbjct: 243 QKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLS 299 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 +LI TG PILLLD++ + LD++++ AL + +Q F+T TD DS+++ Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QTQTFITTTD---LDSISQ 353 >gi|254302376|ref|ZP_04969734.1| recombination protein F [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322568|gb|EDK87818.1| recombination protein F [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 369 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/351 (22%), Positives = 163/351 (46%), Gaps = 15/351 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +LN FRN + + + +F G N GKT++LEAI + S G F+ +++ + Sbjct: 6 ITYLN---FRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWL 125 F S+ + + +A+ I + ++ + N I D K + I Sbjct: 63 YNFDEFISS---ISYQDYIANNKISVRFKNIAGAKKEFFFNKKRISQTDFYGK-INIIAY 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 119 IPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243 E + + I R+E + +LS ++ ++Y + N + L LD + + Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTVEMI 238 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +E K++ + + + +LIGPH+ D +++ + I+ S GE+K ++ + L Sbjct: 239 QESLKKEILQKKYQEDRYKFSLIGPHKDDYKFLLNGHEAKIS---ASQGEKKSIIFSLKL 295 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + +I P++++D+I+++ DED+R ++ Q+ ++ TDK Sbjct: 296 SEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346 >gi|134297885|ref|YP_001111381.1| recombination protein F [Desulfotomaculum reducens MI-1] gi|172044201|sp|A4J0F3|RECF_DESRM RecName: Full=DNA replication and repair protein recF gi|134050585|gb|ABO48556.1| DNA replication and repair protein RecF [Desulfotomaculum reducens MI-1] Length = 371 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 96/358 (26%), Positives = 160/358 (44%), Gaps = 32/358 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++K L++ FRNY + + I G N GKTN+LEAI + G FR DV Sbjct: 1 MRVKKLSLRNFRNYKEAQFIPHPSINIITGPNAQGKTNLLEAIYYSLRGCSFRAEKDRDV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 T ++ S + L+ IKL+ + + L +N V R EL+ + Sbjct: 61 T-----NWESNHTVINTEVNLSSRLIKLQWKIQEGSKKLSLNGVE-RPRSELD-LFGVVL 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G ERR FLD V + P + + + +++ RN LL E S Sbjct: 114 FCPEDLSLIKGSPQERRHFLDYEVGTLSPGYSQLWRQYAKILSQRNSLLKEIRDHRSKQE 173 Query: 185 SIEA---QMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLTGF 231 +E Q+ G K+ R++++ L + E +Q + + L G Sbjct: 174 VLEVWDEQLYRYGAKVIYLRLQVLKKLIPIARKTHFGLTGGTEELQAKYLSSLVLE-PGL 232 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 +G+ Q F + +KK+ R+M+ +TL+GPHR DL + + GS G+ Sbjct: 233 SEGQIYQVFSS----SSKKI---RQMELKRCQTLLGPHRDDLSLA-INGVEAKTFGSQGQ 284 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMT 348 Q+ V + + L+ L + G P+LLLD++ LD ++N L +I+ + Q F+T Sbjct: 285 QRTVTLSLKLSQLDLWYHEFGEYPVLLLDDVLFELDRSRQNMLIDKILNKV--QTFIT 340 >gi|256545953|ref|ZP_05473308.1| DNA replication and repair protein RecF [Anaerococcus vaginalis ATCC 51170] gi|256398375|gb|EEU11997.1| DNA replication and repair protein RecF [Anaerococcus vaginalis ATCC 51170] Length = 357 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 23/351 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L +++FRNY S + F+ IF+GDN GKTN+LE+I +L+ + F+ D+ Sbjct: 3 IQNLKLNKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDLIM 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + + ++ I + + + + + +N++ +L ++ Sbjct: 63 FNEKE-MSLDGIIRKNQSFKNVHISV----NENKKDIFVNEIKYDKNKDLKSLFKLVLFT 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183 P I RR +D ++ +++ ++ DF++++ RN+LL YF + Sbjct: 118 PEDLNIIKDGPNFRRDLIDDIIISVNFSYKAVKKDFDKILSQRNKLLKNQRSKYFKTELM 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFC 241 + + Q+ L KI R + I SLI Y K N K +LT Sbjct: 178 -AFDQQIIRLNYKIYRFREKYI----SLINTYANKNHLNLTENKENLTIIYKPNIR---A 229 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRS--DLIVDYCDKAITIAHGSTGEQKVVLVGI 299 EEY +K D RT G R D+I++ D T GS G+Q+ ++ I Sbjct: 230 KSMEEYGEKFSKNISDDLKYFRTTSGSQRDEIDIIINGKD---TKKFGSQGQQRSAILNI 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LA+ LI NT+ I+L D++ + LDE + N L + + + I T T Sbjct: 287 KLANVNLIENTSQDKAIILFDDVFSELDEKRSNFLLENLGEFQTIITATNT 337 >gi|313635494|gb|EFS01731.1| DNA replication and repair protein RecF [Listeria seeligeri FSL N1-067] Length = 370 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 46/364 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG ++ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRIVKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDPMLLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249 A++ + + R + I L + + + + LK EY A Sbjct: 186 ADVAINLTKRRADFIQKLEAY-----------------AAPIHSQISRGLETLKIEYKAS 228 Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 VTLAGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFD 356 S D Sbjct: 347 SGID 350 >gi|237743162|ref|ZP_04573643.1| DNA replication and repair protein recF [Fusobacterium sp. 7_1] gi|229433458|gb|EEO43670.1| DNA replication and repair protein recF [Fusobacterium sp. 7_1] Length = 369 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/350 (22%), Positives = 163/350 (46%), Gaps = 13/350 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +LN FRN + + + +F G N GKT++LEAI + S G F+ +++ + Sbjct: 6 ITYLN---FRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F S+ + + + IS++ + + + N I D K + I + Sbjct: 63 YNFEEFISSISYQDYIAS-NKISVRFKNITG-AKKEFFFNKKRISQTDFYGK-VNIIAYI 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + +G RR F D + ID + + D+++L++ RN+ L E +S + Sbjct: 120 PEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKDYDKLLKIRNKYLKENKRNSEEFAIY 179 Query: 187 EAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCALK 244 E + + I R+E + +LS ++ ++Y + N + L LD + ++ Sbjct: 180 EREFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTIEMIQ 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E K++ + + + +L+GPH+ D +++ + I+ S GE+K ++ + L+ Sbjct: 240 ESLKKEISQKKYQEDKYKFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +I P++++D+I+++ DED+R ++ Q+ ++ TDK Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346 >gi|253698659|ref|YP_003019848.1| DNA replication and repair protein RecF [Geobacter sp. M21] gi|259563661|sp|C6E7Q7|RECF_GEOSM RecName: Full=DNA replication and repair protein recF gi|251773509|gb|ACT16090.1| DNA replication and repair protein RecF [Geobacter sp. M21] Length = 364 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 159/353 (45%), Gaps = 21/353 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L ++ FRN ++ L + +F G+NG GKTN+LE+I L+ + F++A A++ Sbjct: 1 MKLIKLKLASFRNLQNIELAPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQARNAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +F FA V+G + ++ ++ + +++ ++ +D+ +L + Sbjct: 61 I-----AFGGEFALVKGTVERDQVRREIAVLIEKQGKKAKVDAKLMTRLDDFFGNLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSW 182 P + G RRR+LDR VF D + D+ ++++ RN LL E W Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLGYLTAYHDYAKILKNRNALLKVNETAGIEVW 175 Query: 183 CSSIEAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q A L ++ A ++ I L E + I+ L G +D + Sbjct: 176 TEQL-VQAALLVIERRKAYLDRIGRLLQGFYSEISGNDETVQIEYRLHG-VDARL----- 228 Query: 242 ALKEEYAKKLFDGRKMDSMSRR----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 E+ A+ L + + R T IGPHR DL + S G+Q+ ++ Sbjct: 229 -FAEDPAEALNQALRAHAAEERRRGSTAIGPHRDDLYFGLNGRGAR-QFASQGQQRSFVL 286 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + +A I+ P+LLLD++++ LD ++ L + Q+F+T T Sbjct: 287 ALKMAEIEHITRCFEAPPVLLLDDMTSELDRERNRNLMEFLKKREMQVFITTT 339 >gi|312792286|ref|YP_004025209.1| DNA replication and repair protein recf [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179426|gb|ADQ39596.1| DNA replication and repair protein RecF [Caldicellulosiruptor kristjanssonii 177R1B] Length = 353 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 158/349 (45%), Gaps = 23/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + I FR+Y F + + VG+N GKT++LEA+ F G+ F+ DV Sbjct: 1 MKIKRIYIENFRSYKQRFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFKS---RDV 57 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 I F S + ++E + DI + DR++ + + +ND IR + EL + Sbjct: 58 DAIN---FDSYYFKLEMSAEVGDIEYSILCYVDRALEKRIMLNDKKIRRLSELISLFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RRRFLD V + P + +++R + RN L + Y Sbjct: 115 FFEPDTTELIKHQPSTRRRFLDMEVAKLYPYMTKVYSEYQRALLSRNAFL-KSYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA- 242 + Q+++LG I R E+I+ LS ++ + + L+ ++ S A Sbjct: 174 DVYDMQISQLGFLIFQKRQEVIDKLS------IEAQKIFSLVFENKSLLELRYMPSINAS 227 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +EEY K+L D T G HR D + D I S G+ K+ V + LA Sbjct: 228 SEEEYYKELKKCLLKDLNLGYTTKGVHRDDFGI-LIDGKPAIDFASEGQIKLAAVSVVLA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + L + P+L+LD++ + LD+ KR L + ++ S F+T + Sbjct: 287 TSLLYTE-----PVLILDDVFSELDKFKRKNLVKFISQYQS--FVTSAE 328 >gi|256027569|ref|ZP_05441403.1| RECF protein [Fusobacterium sp. D11] gi|289765528|ref|ZP_06524906.1| DNA replication and repair protein recF [Fusobacterium sp. D11] gi|289717083|gb|EFD81095.1| DNA replication and repair protein recF [Fusobacterium sp. D11] Length = 369 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/351 (22%), Positives = 163/351 (46%), Gaps = 15/351 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +LN FRN + + + +F G N GKT++LEAI + S G F+ +++ + Sbjct: 6 ITYLN---FRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWL 125 F S+ + + +A+ I + ++ + N I D K + I Sbjct: 63 YNFDEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGK-VNIIAY 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 119 IPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243 E + + I R+E + +LS ++ ++Y + N + L LD + + Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTVKVTIEMI 238 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +E K++ + + + +L+GPH+ D +++ + I+ S GE+K ++ + L Sbjct: 239 QESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKL 295 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + +I P++++D+I+++ DED+R ++ Q+ ++ TDK Sbjct: 296 SEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346 >gi|150006868|ref|YP_001301611.1| putative DNA replication and repair protein [Parabacteroides distasonis ATCC 8503] gi|262384383|ref|ZP_06077518.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_33B] gi|298377294|ref|ZP_06987247.1| RecF protein [Bacteroides sp. 3_1_19] gi|301308691|ref|ZP_07214643.1| RecF protein [Bacteroides sp. 20_3] gi|166220722|sp|A6L8H5|RECF_PARD8 RecName: Full=DNA replication and repair protein recF gi|149935292|gb|ABR41989.1| putative DNA replication and repair protein [Parabacteroides distasonis ATCC 8503] gi|262294086|gb|EEY82019.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_33B] gi|298265708|gb|EFI07368.1| RecF protein [Bacteroides sp. 3_1_19] gi|300833215|gb|EFK63833.1| RecF protein [Bacteroides sp. 20_3] Length = 365 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 163/362 (45%), Gaps = 32/362 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N ++F + F G+NG+GKTN+L+AI +LS + + D Sbjct: 3 LKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKS--HVNTPDSQI 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121 I S V+G + E R++ ++ + D+L++H+ Sbjct: 61 INSDQ---DLCVVQG-------NYDYEGREEEIFCAMRRRQRKQFKRNKKEYDKLSEHIG 110 Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + LV P+ + G S ERRRFLD ++ D + +I + + + RN LL + Sbjct: 111 LLPLVMVSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSM 170 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D+S +E Q+ G + R +++ + + EY Q ++ G + Sbjct: 171 DASLYEVLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQ---------TICGSAEEVGLH 221 Query: 239 SFCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L+E E A KL R+ D + T G H+ +L + I GS G+ K L+ Sbjct: 222 YISQLEETELAGKLAMSRERDRILGYTSSGIHKDELEMTLGGYLIRRV-GSQGQNKTYLI 280 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFD 356 + LA ++ PILLLD+I LD + + ++V++ G QIF+T T++ D Sbjct: 281 ALKLAQFAFLNKRGQTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLD 340 Query: 357 SL 358 + Sbjct: 341 EI 342 >gi|307133245|ref|YP_003885261.1| gap repair protein [Dickeya dadantii 3937] gi|306530774|gb|ADN00705.1| gap repair protein [Dickeya dadantii 3937] Length = 361 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 96/364 (26%), Positives = 157/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR A V R Sbjct: 6 LLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F R+EG E + + D +VR I+ V EL + L I + P Sbjct: 66 AEFI-LHGRIEGQERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F +P + +RL+R RN L + ++ +W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQVSHYGQLRAW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L I+ R + A+++ I + P LS + F G +S + Sbjct: 178 DRELVPLAEGISQWRADYSAAIAADIGSTC-AQFLPEFSLSFS-FQRGWDKES------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T +GPH++D + A+ S G+ K+++ + LA Sbjct: 230 YAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ G + L+D+ ++ LD +R L + +Q+F++ T + + D + E K Sbjct: 289 LTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGKMF 348 Query: 366 RISN 369 R+ Sbjct: 349 RVEQ 352 >gi|157373149|ref|YP_001471749.1| DNA replication and repair protein RecF [Shewanella sediminis HAW-EB3] gi|189039644|sp|A8FP48|RECF_SHESH RecName: Full=DNA replication and repair protein recF gi|157315523|gb|ABV34621.1| DNA replication and repair protein RecF [Shewanella sediminis HAW-EB3] Length = 360 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 96/354 (27%), Positives = 161/354 (45%), Gaps = 23/354 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I FRN S +L+ + G NG GKT+ILEAI FL GR FR V + S Sbjct: 6 LHIETFRNITSAQLLPGEGINLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRVIQ-HS 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + ++ + I ++ + V+ I+ ++ + L + L I + P S Sbjct: 65 DDKLTLFANLNVLDKESKIGLRRFRSGETEVK---IDGDKVKRLSTLAESLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCSSI 186 +F G RR+F+D F D ++ +R+++ RN+LL Y + Sbjct: 122 FALLFEG-PKSRRQFIDWGAFHCDKSFHSAWVNVKRILKQRNQLLKNETSYSQIQFWDKE 180 Query: 187 EAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +E+ I V +N L +I E++ +K+S T D K D Sbjct: 181 LVRYSEVVTDIRTRYVNSLNEQLKGIIGEFLP---LVDVKVSFTRGWDSKTD-------- 229 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 YA+ L D S T GPH++DL + + A S G+ K+++ + +A + Sbjct: 230 -YAQLLEMQYPRDLASGNTGSGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQGK 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL 358 L+ I L+D++ A LD R L + + D G+Q+F+T + ++ DSL Sbjct: 288 LLKQQIDKNSIYLVDDLPAELDAKHRQLLLQQLIDTGAQVFVTAIEPAAILDSL 341 >gi|256820016|ref|YP_003141295.1| DNA replication and repair protein RecF [Capnocytophaga ochracea DSM 7271] gi|256581599|gb|ACU92734.1| DNA replication and repair protein RecF [Capnocytophaga ochracea DSM 7271] Length = 373 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 156/361 (43%), Gaps = 42/361 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ ++N S F FVGDNGVGKTN+L+AI L + + S R Sbjct: 4 LKQISVVNYKNILSQAYAFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQNVR 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---------RVVDELN 117 G F +EG + E R+++ V L+ + R+ D + Sbjct: 64 HGEE-----FYLIEG-------QFRQEEREEQIVCSLKKGQKKVMKHNGKAYERLADHIG 111 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-- 175 K+ + D I G S RR+FLD ++ D + ++ + R + RN LL + Sbjct: 112 KYPMVLISPSDRDLIVEG-SETRRKFLDSVISQTDRAYLELLLRYNRTLLQRNTLLKQMT 170 Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTG 230 G F + Q+A LG I R + + E + +I K ++ Sbjct: 171 EGGVFSLETLHIYDEQLAPLGQHIYEKRRTFMEEFLPIF-----SEQYAYISGGKERVSL 225 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D QS + A +L + + D ++ T G H+ DL+ + + +GS G Sbjct: 226 HYDSSLHQS------DLATQLVENTERDRSAQYTTAGIHKDDLLFE-IEGYPMKKYGSQG 278 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTG 349 +QK L+ + L+ ++ + G PI+LLD+I LD+ + L ++VT Q+F+T Sbjct: 279 QQKSFLIALKLSQFEVLKQSLGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITD 338 Query: 350 T 350 T Sbjct: 339 T 339 >gi|326802597|ref|YP_004320416.1| DNA replication and repair protein recF [Sphingobacterium sp. 21] gi|326553361|gb|ADZ81746.1| DNA replication and repair protein recF [Sphingobacterium sp. 21] Length = 365 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 98/391 (25%), Positives = 160/391 (40%), Gaps = 60/391 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + F+NY L F F GDNG GKTNIL+A+ +LS + + D + Sbjct: 3 VKELTVINFKNYEEASLTFAPGVNAFTGDNGAGKTNILDALHYLSLCKSYFNP--IDSQQ 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV-------VDELNKH 119 I + F V+G+ E D V + + L H Sbjct: 61 IKQQA---DFFMVQGV---------FEKGDQEDVLACSLKRNQKKQFKKNKKDYQRLADH 108 Query: 120 LRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 + + LV P+ I S S ERR+F+D ++ D R+ +I + + ++ RN LL + Sbjct: 109 IGVYPLVMISPNDSFIISEGSEERRKFIDNVISQTDNRYLDDLILYNKYLQSRNSLLKQQ 168 Query: 177 Y----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 +D + Q+ +G +I R IN + ++ Q + L Sbjct: 169 ALSKNYDDDLLAVYNEQLVLVGEQIFEKRKLFINPFIEIFNKHYQHLTNDTEPVELV--- 225 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMS---------RRTLIGPHRSDLIVDYCDKAIT 283 Y +LF+ R +D ++ RT G H+ DL+ + Sbjct: 226 --------------YESQLFENRFVDLLNNTLSKDRALERTTTGIHKDDLLFTIHGMPLK 271 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIG 342 GS G+QK L+ + LA + GF P+LLLD+I LD+ + L +V+ D Sbjct: 272 -KFGSQGQQKSFLIALKLAQYSFLRERKGFKPLLLLDDIFDKLDDKRTRKLMEMVSHDDF 330 Query: 343 SQIFMTGTD----KSVFDSLNETAKFMRISN 369 QIF+T T ++ F ++ + +SN Sbjct: 331 GQIFITDTSAERVRNTFHGIDVDVRIFEVSN 361 >gi|269124281|ref|YP_003297651.1| DNA replication and repair protein RecF [Thermomonospora curvata DSM 43183] gi|268309239|gb|ACY95613.1| DNA replication and repair protein RecF [Thermomonospora curvata DSM 43183] Length = 379 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/373 (24%), Positives = 161/373 (43%), Gaps = 46/373 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+YA+ + + ++FVG NG GKTN++EAI +++ R A+ A + Sbjct: 1 MHVAHLSLQDFRSYATAEIALEPGVSVFVGPNGQGKTNLMEAIGYVAAHSSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+P R + I+LE RS R ++N + E+ LR Sbjct: 61 IRQGAPR---AIVRAGVVRDDRKALIELEINPGRSNRA-RLNRAPVPRPREILGMLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----D 179 P + G ERRRFLD ++ A PR D++R++R RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARAPRLAGVRADYDRVLRQRNALLKSAAAHRRPPG 176 Query: 180 SSWCSSIE---AQMAELGVKINIARVEMINALS-----------------SLIMEYVQKE 219 +++E + +A +G ++ AR++++ LS SL E Sbjct: 177 PEMLATLEVWDSHLARVGAELLAARLKLVADLSPLAAKAYAALAPGGGIASLAYRSSLGE 236 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 P ++ + Q+ L EE +++ R+ + +L+GPHR +L++ Sbjct: 237 RLPEDRMPVP-------RQTLAPLIEEALREV---RRQELERGVSLVGPHRDELVLQLGG 286 Query: 280 KAIT--IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 +HG + + L R G P+L+LD++ A LD +R L + Sbjct: 287 MPARGFASHGESWSLALALRLAAFELLR----ADGDDPVLILDDVFAELDTGRRRRLAEL 342 Query: 338 VTDIGSQIFMTGT 350 V Q+ +T Sbjct: 343 VAP-AEQVLITAA 354 >gi|68535065|ref|YP_249770.1| recombination protein F [Corynebacterium jeikeium K411] gi|260579563|ref|ZP_05847434.1| DNA replication and repair protein recF [Corynebacterium jeikeium ATCC 43734] gi|97180706|sp|Q4JYF5|RECF_CORJK RecName: Full=DNA replication and repair protein recF gi|68262664|emb|CAI36152.1| DNA replication and repair protein RecF [Corynebacterium jeikeium K411] gi|258602334|gb|EEW15640.1| DNA replication and repair protein recF [Corynebacterium jeikeium ATCC 43734] Length = 425 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 102/410 (24%), Positives = 176/410 (42%), Gaps = 59/410 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +S +R++ L L TIF G NG GKTNI+EA+ +L+ R S A + R Sbjct: 3 VSNLRLSNYRSWEELDLQLSPGITIFSGPNGHGKTNIVEALGYLAHLSSHRVNSDAALVR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + S A G E A ++I+ R IN + +L +R + Sbjct: 63 RGEEIANISATAVNNGRELTAHLAIRA-----RGSNRAHINRAAMNSQRDLLGVVRTTLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178 P + G +RR FLD ++ A PR D+++ +R RN LL + F Sbjct: 118 SPEDLALIRGEPEQRRHFLDAIMVARYPRLAAVKADYDKALRQRNALLRQSAFALRLVVG 177 Query: 179 ----------------DSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQ-- 217 S +++ ++Q+A LG +I ARV++++ L+ + + Q Sbjct: 178 APKGASHNLSEDIKADAESALATLDVWDSQLAALGAQIMSARVQIVHDLAPHLQQTYQSL 237 Query: 218 -KENFPHIKLSLTGFLD------------GKFDQSFCALKEEYAK----KLFDGRKMDSM 260 ++ P +S T +D + +Q L E A+ + F ++ + Sbjct: 238 APQSRP-AHMSYTSTIDVELADLGIRLGVSEPNQPTALLSPEIAEATLLQAFANKRPQEV 296 Query: 261 SR-RTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317 R TL+GPHR D LI+ + + S GE + + LA A + G P++ Sbjct: 297 ERGTTLLGPHRDDVNLILGHQPAK---GYASHGESWSFALSLRLA-AFFMQRGDGVEPVV 352 Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 +LD++ A LD +R L +++ + D+ + ++L + AK I Sbjct: 353 ILDDVFAELDSSRRQHLVDLISSAEQVLITAAVDEDIPEALRDVAKIYTI 402 >gi|37524035|ref|NP_927379.1| recombination protein F [Photorhabdus luminescens subsp. laumondii TTO1] gi|51316319|sp|Q7NAD1|RECF_PHOLL RecName: Full=DNA replication and repair protein recF gi|36783458|emb|CAE12298.1| DNA replication and repair protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 363 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 95/361 (26%), Positives = 155/361 (42%), Gaps = 17/361 (4%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I +FRN A+ L VG NG GKT++LEAI L GR FR V G Sbjct: 8 IRDFRNIAAADLPLATGFNFLVGSNGSGKTSVLEAIYTLGHGRSFRSIQAGRVILHGCDE 67 Query: 72 FFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F R+ E + SI L D VR I+ + EL K L + + P Sbjct: 68 FV-LHGRLGQQENERERSIGLSKNRNGDSKVR---IDGSDGGKIAELAKMLPMQLITPEG 123 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR F+D F +PR ++ +RL++ RN L + S + + Sbjct: 124 FTLLNGGPKYRRAFIDWGCFHNEPRFFSAWVNLKRLLKQRNAALRQ-VTRYSQIRPWDQE 182 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +IN R E + ++ I K+ P LS + F Q + + +YA+ Sbjct: 183 LIPLANQINQWRGEYVTNITQDITNTC-KQFLPEFTLSFS------FQQGWDK-ESDYAE 234 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++DL + + S G+ K+++ + LA + Sbjct: 235 LLERQFERDRTLTYTASGPHKADLRIRAEGTPVEDML-SRGQLKLLMCALRLAQGEYFTR 293 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + D L+ +K R+ Sbjct: 294 QSGQQCLYLLDDFASELDTSRRQLLAARLKSTQAQVFVSAINPDQITDMLDGNSKMFRVE 353 Query: 369 N 369 N Sbjct: 354 N 354 >gi|86156433|ref|YP_463218.1| DNA replication and repair protein RecF [Anaeromyxobacter dehalogenans 2CP-C] gi|97180309|sp|Q2ILU8|RECF_ANADE RecName: Full=DNA replication and repair protein recF gi|85772944|gb|ABC79781.1| DNA replication and repair protein RecF [Anaeromyxobacter dehalogenans 2CP-C] Length = 372 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 84/359 (23%), Positives = 159/359 (44%), Gaps = 14/359 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L++ +FRN A++ L + T+ +G+NG GKTN+LEAI FL+ + R A++ Sbjct: 1 MKLLSLHVQDFRNLAAVELAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV---VDELNKHLR 121 R G+ + + EG G+ +++++ R ++ + +D+ + L Sbjct: 61 VRFGA-ADAAVAGDFEGPGGVRRVAVQVAA----GGRTASLDGKALGSGARLDDYFEGLA 115 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 P + RRRFLDR F P ++ R +R RN L G + Sbjct: 116 SVCFSPDDLLLVKAGPDGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRSGTAEVE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLTGFLDGKFDQ 238 +S + G ++ + R +++ L+ + + P L+ + Sbjct: 176 --ASFREPLVRAGARLLVRRRDLVAELAPRLRAAFAEISGPAAPEADLAYRAAGGVEVGH 233 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A+ L + D T GPH DL++ K + +GS G+Q+ +++ Sbjct: 234 PEAEVAARLARALETRLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLA 292 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + +A + G P+LLLD++S+ LD K L + + +Q F+T TD+ + + Sbjct: 293 LKIAEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTTTDRRLIEP 351 >gi|256848503|ref|ZP_05553945.1| DNA replication and repair protein RecF [Lactobacillus coleohominis 101-4-CHN] gi|256714770|gb|EEU29749.1| DNA replication and repair protein RecF [Lactobacillus coleohominis 101-4-CHN] Length = 374 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 164/362 (45%), Gaps = 31/362 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ +++ FRNY L++VF I +G+N GKTN+LEAI L+ + R + ++ + Sbjct: 3 LQEMHLKHFRNYDELKVVFSPGINILIGENAQGKTNLLEAIHVLALTKSHRTSKDRELIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F + + +E + LE + + + +++N + + +L + Sbjct: 63 WKHKQAFLSGKVQKQVE-----RVPLEIQLAQGGKRVKVNHLYQSRLSAYVGNLNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P + G+ RR+F++ + + + + L++ RN+ L + D Sbjct: 118 PEDLALVKGVPQVRRQFMNMEFGQMSSAYLYNVSHYHSLLQQRNQYLKQLRSGEQTDRVL 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSL---IMEYV--QKENFPHIKLSLTGFLDGKFD 237 I Q+A+ G I +AR ++ L + E++ QKE +K +D + Sbjct: 178 LGVISDQLAQDGAAIVLARFRLLKQLEKWAQRLHEHISLQKEQL-RLKYVTQLTID---E 233 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRR-----TLIGPHRSDLIVDYCDKAITIAH-GSTGE 291 Q+ E +KLFD D++ R TL GP R D + + + H GS G+ Sbjct: 234 QTTRENLETQLRKLFD----DNLEREIALGTTLAGPQRDD--IHFIVNGQNVQHFGSQGQ 287 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 Q+ + + LA L+ TG P+LLLD++ + LD+D++ L + D Q F+T T Sbjct: 288 QRTTALAVKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQD-KVQTFLTTTS 346 Query: 352 KS 353 S Sbjct: 347 LS 348 >gi|256842142|ref|ZP_05547647.1| DNA replication and repair protein recF [Parabacteroides sp. D13] gi|256736458|gb|EEU49787.1| DNA replication and repair protein recF [Parabacteroides sp. D13] Length = 365 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 91/362 (25%), Positives = 164/362 (45%), Gaps = 32/362 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N ++F + F G+NG+GKTN+L+AI +LS + + D Sbjct: 3 LKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKS--HVNTPDSQI 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121 I S V+G + E R++ ++ + D+L++H+ Sbjct: 61 INSDQ---DLCVVQG-------NYDYEGREEEIFCAMRRRQRKQFKRNKKEYDKLSEHIG 110 Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + LV P+ + G S ERRRFLD ++ D + +I + + + RN LL + Sbjct: 111 LLPLVMVSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSM 170 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D+S +E Q+ G + R +++ + + EY Q ++ G + Sbjct: 171 DASLYEVLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQ---------TICGSAEEVGLH 221 Query: 239 SFCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L+E E A KL R+ D + T G H+ +L + + + GS G+ K L+ Sbjct: 222 YISQLEETELAGKLAMSRERDRILGYTSSGIHKDELEMT-LGRYLIRRVGSQGQNKTYLI 280 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFD 356 + LA ++ PILLLD+I LD + + ++V++ G QIF+T T++ D Sbjct: 281 ALKLAQFAFLNKRGQTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLD 340 Query: 357 SL 358 + Sbjct: 341 EI 342 >gi|159900239|ref|YP_001546486.1| DNA replication and repair protein RecF [Herpetosiphon aurantiacus ATCC 23779] gi|226737805|sp|A9B775|RECF_HERA2 RecName: Full=DNA replication and repair protein recF gi|159893278|gb|ABX06358.1| DNA replication and repair protein RecF [Herpetosiphon aurantiacus ATCC 23779] Length = 385 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 99/369 (26%), Positives = 163/369 (44%), Gaps = 35/369 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + +FR Y SL L +F G N GKT ILEA+ +L+ R R A V R Sbjct: 3 VSRLQLQDFRIYRSLNLALPPGVCLFYGANAAGKTTILEALYYLATTRSLR----ASVER 58 Query: 67 ----------IGSPSFFSTFARVEGMEG--LADISIKLETR-------DDRSVRCLQIND 107 +G P F A ++ + I I L+ + + + ++IN Sbjct: 59 ELIALEAAGDLGLPPFARLAASLQPQPEAEMQTIEIVLQRKFGADGDLAPTTSKTIRINK 118 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 + R +D L LR+ P + +G ERRR+LD + ID R+ R + + +++ Sbjct: 119 IARRALD-LIGQLRVVMFAPQDLELVTGAPAERRRYLDVTLSQIDGRYVRALSRYNQVLT 177 Query: 168 GRNRLLTEGYFDSSWCSS-----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 RN LL S + ++A+ GV + R + L L + + Sbjct: 178 QRNGLLRTSRERGRAASEQDLAFWDEELAKAGVYVLRERRRAVTTLDQLAQRLYAEISGS 237 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 + L L +LD + + K+L R+ + TLIGPHR DL + ++ + Sbjct: 238 DLDLRLN-YLDTTPAHDVPSFQAAL-KQL---RREERERGVTLIGPHRDDLSIQLAEREV 292 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + GS G+Q+ + + LA A L+ + TG P+LLLD++ + LD+ +R L + Sbjct: 293 G-SFGSRGQQRASTLALRLAEAELMHSRTGDRPVLLLDDLLSELDQKRREHLLTTIVRPQ 351 Query: 343 SQIFMTGTD 351 Q +T TD Sbjct: 352 QQTLITATD 360 >gi|227538439|ref|ZP_03968488.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33300] gi|227241721|gb|EEI91736.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33300] Length = 368 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 17/350 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ F+NY L F + F G+NG GKTN+L+AI +LS + + + + Sbjct: 3 LKQLSVLNFKNYTESALEFLPEVNAFAGENGAGKTNLLDAIHYLSLCKSYFNPIDSQHIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G +F E + IS L+ + + + + R+ D + + + + Sbjct: 63 QGM-DWFMVQGSFENDTRIDVISCSLKKNQKKQFKKNKKD--YPRLADHIGQ-FPLVMIS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P+ I + S ERR+F+D ++ D + ++I + ++M RN +L + G D Sbjct: 119 PNDSMIITDGSEERRKFMDNVISQTDHHYLDKLITYNKVMLQRNVMLKQARESGQLDLGL 178 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+ E+G +I R + + + E+ + +F + ++ Sbjct: 179 LEVLNLQLVEVGAQIFEKRQQF---MKDFLPEFEKHYHFLTESAEQVSLV---YESPLMT 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + ++ L + D RT G H+ DL+ + GS G+QK L+ + LA Sbjct: 233 V--DFQDLLDRNLERDRALERTSQGIHKDDLLFTIHEGMPLKKFGSQGQQKSFLIALKLA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD 351 + + GF P+LLLD+I LDE + L ++V+ D QIF+T TD Sbjct: 291 QYSFLQSRKGFKPLLLLDDIFDKLDERRTRKLMQMVSEDDFGQIFLTDTD 340 >gi|296167141|ref|ZP_06849548.1| recombination protein F [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897463|gb|EFG77062.1| recombination protein F [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 385 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 99/365 (27%), Positives = 161/365 (44%), Gaps = 34/365 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A L + T+FVG NG GKTN++EA+ F + R S + R Sbjct: 3 VRHLGLRDFRSWAHADLELEPGRTVFVGSNGFGKTNLVEALWFSATLGSHRVGSDTPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST EG E ++ LE R+ + ++N +R E+ LR Sbjct: 63 AGADRAVVSTIVVNEGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G ERRR+LD + P D+++++R R LL Sbjct: 118 APEDLALVRGDPAERRRYLDDLATVRRPAVAGVRADYDKVLRQRTALLKSAAGMRHRADR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFP---HIKLSLT 229 G D+ ++++AE G ++ AR++++N L+ + + Q + P + SL Sbjct: 178 GALDT--LDVWDSRLAEHGAELMAARIDLVNQLTPEVEKAYQLLAPASRPASIAYRSSLG 235 Query: 230 GFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIA 285 L G D+ F A R+ + R L+GPHR DL + D+ Sbjct: 236 AQLAADGGGHDREFLEAALLAALAE---RRDAELERGMCLVGPHRDDLELWLGDQPAK-G 291 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 S GE V + LA L+ G P+LLLD++ A LD +R AL V + Q+ Sbjct: 292 FASHGESWSFAVALRLAAYELL-RADGSEPVLLLDDVFAELDAARRRALA-TVAEAAEQV 349 Query: 346 FMTGT 350 +T Sbjct: 350 LVTAA 354 >gi|260184856|ref|ZP_05762330.1| recombination protein F [Mycobacterium tuberculosis CPHL_A] gi|289445528|ref|ZP_06435272.1| DNA replication and repair protein recF [Mycobacterium tuberculosis CPHL_A] gi|289418486|gb|EFD15687.1| DNA replication and repair protein recF [Mycobacterium tuberculosis CPHL_A] Length = 385 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 164/363 (45%), Gaps = 30/363 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A + L T+FVG NG GKTN++EA+ + + R ++ + + R Sbjct: 3 VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADSPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+ + ST +G E D+ I V ++N +R ++ LR Sbjct: 63 VGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G +RRR+LD + P ++ER++R R LL Sbjct: 118 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G FD+ ++++AE G ++ AR++++N L+ + + Q P + + G+ Sbjct: 178 GVFDT--LEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLA-PESRSASIGYRASM 234 Query: 232 -LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHG 287 + G +QS + + D+ R L+GPHR DLI+ D+ Sbjct: 235 DVTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFA 293 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q+ + Sbjct: 294 SHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLV 351 Query: 348 TGT 350 T Sbjct: 352 TAA 354 >gi|294781813|ref|ZP_06747146.1| RECF protein [Fusobacterium sp. 1_1_41FAA] gi|294481923|gb|EFG29691.1| RECF protein [Fusobacterium sp. 1_1_41FAA] Length = 369 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/350 (22%), Positives = 162/350 (46%), Gaps = 13/350 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +LN FRN + + + +F G N GKT++LEAI + S G F+ ++ + Sbjct: 6 ISYLN---FRNLENTSIELSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTTEMIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F S+ + + + IS++ + + + N I D K + I + Sbjct: 63 YNFDEFISSISYSDYIAN-NKISVRFKNIPG-AKKEFFFNKKRISQTDFYGK-INIIAYI 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + +G RR F D + ID + + ++++L++ RN+ L E ++ + Sbjct: 120 PEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNTEEFAVY 179 Query: 187 EAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCALK 244 E + + I R+E + +LS ++ ++Y + N + L LD + ++ Sbjct: 180 EKEFIKYASYIIFTRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTVEMIQ 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E K++ + + + +L+GPH+ D +++ + I+ S GE+K ++ + L+ Sbjct: 240 ESLQKEILQKKHQEDRYKFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +I P++++D+I+++ DED+R ++ Q+ ++ TDK Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILEFFNKRDIQVLISSTDK 346 >gi|162446892|ref|YP_001620024.1| DNA replication and repair protein [Acholeplasma laidlawii PG-8A] gi|189039616|sp|A9NE68|RECF_ACHLI RecName: Full=DNA replication and repair protein recF gi|161984999|gb|ABX80648.1| DNA replication and repair protein [Acholeplasma laidlawii PG-8A] Length = 349 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 88/347 (25%), Positives = 158/347 (45%), Gaps = 29/347 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + FRN + +++ + I G NGVGKT+ILE+I F + + R + D+ + Sbjct: 2 ITSIELRNFRNLENYKVLINKPLVIIQGLNGVGKTSILESIYFAATTKSHRSSVEKDMIQ 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P +A V+ +E I L R+ IN +R + + LR+ Sbjct: 62 YDKP-----YASVKLIEDSKLHEIVLTPNGKRTT----INKSEVRKISDYIGQLRVVMFA 112 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCS 184 P + G ERR FLD + + + R + ++++++ RN LL + D ++ + Sbjct: 113 PEDLMLIKGSPSERRYFLDMELMQVSKTYLRNLNSYKKILKQRNALLKKNRNLTDYTFLN 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF--CA 242 + Q+ ++G++I R + I AL+ + F I+ T + D + + + Sbjct: 173 ILGEQLYDVGIQIFDERQKFIEALN---------QKFKTIQ---TKYKDFEVEMLYEPNV 220 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA-HGSTGEQKVVLVGIFL 301 KE + K L +K D M T G H+ D + Y K + S G +++++ + L Sbjct: 221 TKENFLKHLKTKQKQDIMYETTTAGIHKDDFKLLY--KGLNAKDSASQGTSRLIVIELKL 278 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 A I T ILLLD++ + LD +++N LF Q+F+T Sbjct: 279 ALLEWIKEVTKTDAILLLDDVLSELDLERQN-LFMSQLSKNHQVFIT 324 >gi|312877902|ref|ZP_07737847.1| DNA replication and repair protein RecF [Caldicellulosiruptor lactoaceticus 6A] gi|311795328|gb|EFR11712.1| DNA replication and repair protein RecF [Caldicellulosiruptor lactoaceticus 6A] Length = 353 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 158/349 (45%), Gaps = 23/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + I FR+Y F + + VG+N GKT++LEA+ F G+ F+ DV Sbjct: 1 MKIKRIYIENFRSYKQRFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFKS---RDV 57 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 I F S + ++E + DI + DR++ + + IND I+ + EL + Sbjct: 58 DAIN---FDSYYFKLEMSAEVGDIEYSILCYVDRALDKRIMINDKKIKRLSELISLFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RRRFLD V + P + +++R + RN L + Y Sbjct: 115 FYEPDTTELVKHQPSTRRRFLDMEVAKLYPYMTKVYSEYQRALLSRNAFL-KSYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA- 242 + Q+++LG I R E+I+ LS ++ + + L+ ++ S A Sbjct: 174 DVYDMQISQLGFLIFQKRQEVIDKLS------IEAQKIFSLVFENKSLLELRYMPSINAS 227 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +EEY K+L D T G HR D + D I S G+ K+ V + LA Sbjct: 228 SEEEYYKELKKCLLKDLNLGYTTKGVHRDDFGI-LIDGKPAIDFASEGQIKLAAVSVVLA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + L + P+L+LD++ + LD+ KR L + ++ S F+T + Sbjct: 287 TSLLYTE-----PVLILDDVFSELDKFKRKNLVKFISQYQS--FVTSAE 328 >gi|237738563|ref|ZP_04569044.1| DNA replication and repair protein recF [Fusobacterium sp. 2_1_31] gi|229424046|gb|EEO39093.1| DNA replication and repair protein recF [Fusobacterium sp. 2_1_31] Length = 369 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/350 (22%), Positives = 163/350 (46%), Gaps = 13/350 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +LN FRN + + + +F G N GKT++LEAI + S G F+ A++ + Sbjct: 6 ISYLN---FRNLENTSVELSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTAEMIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F S+ + + + IS++ + + + N I D K + I + Sbjct: 63 YNFDEFISSISYSDYIAN-NKISVRFKNIPG-AKKEFFFNKKRISQTDFYGK-INIIAYI 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + +G RR F D + ID + + ++++L++ RN+ L E ++ + Sbjct: 120 PEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNTEEFAIY 179 Query: 187 EAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCALK 244 E + + I R+E + +LS ++ ++Y + N + L LD + ++ Sbjct: 180 EKEFIKYASYIIFRRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTVEMIQ 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E K++ + + + +L+GPH+ D +++ + I+ S GE+K ++ + L+ Sbjct: 240 ESLQKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +I P++++D+I+++ DED+R ++ Q+ ++ TDK Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILEFFNKRDIQVLISSTDK 346 >gi|154684522|ref|YP_001419683.1| recombination protein F [Bacillus amyloliquefaciens FZB42] gi|166220699|sp|A7Z0C6|RECF_BACA2 RecName: Full=DNA replication and repair protein recF gi|154350373|gb|ABS72452.1| RecF [Bacillus amyloliquefaciens FZB42] Length = 370 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 89/390 (22%), Positives = 169/390 (43%), Gaps = 54/390 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ R Sbjct: 3 IQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +A++EG M+ DI ++L + + ++N + + + + L Sbjct: 63 -----WDEDYAKIEGRVMKRNGDIPMQLVI--SKKGKKGKVNHIEQQKLSQYVGALNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRFLD + + + + +++++ RN L + D Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQRNHFLKQLQSRKQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIK 225 + + Q+ E K+ R++ L L ++Y H Sbjct: 176 TMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKY-------HTA 228 Query: 226 LSLTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 L ++ D + +SF LKE+ ++ TL GPHR D++ Y + Sbjct: 229 LDVSDPKDLSKIGNSYQESFSKLKEKEIERGV-----------TLFGPHRDDVLF-YVNG 276 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 +GS G+Q+ + + LA LI G PILLLD++ + LD+ +++ L + Sbjct: 277 RDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG 336 Query: 341 -IGSQIFMTGTDKSVFDSLNETAKFMRISN 369 + + + T D D+L++ F R+ N Sbjct: 337 RVQTFVTTTSVDGIDHDTLHQAGMF-RVEN 365 >gi|118467917|ref|YP_884426.1| recombination protein F [Mycobacterium smegmatis str. MC2 155] gi|152060497|sp|A0QND8|RECF_MYCS2 RecName: Full=DNA replication and repair protein recF gi|152060498|sp|P0C561|RECF_MYCSM RecName: Full=DNA replication and repair protein recF gi|1321896|emb|CAA63251.1| recF [Mycobacterium smegmatis] gi|118169204|gb|ABK70100.1| DNA replication and repair protein RecF [Mycobacterium smegmatis str. MC2 155] Length = 384 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 161/362 (44%), Gaps = 31/362 (8%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 + L +++FR++A + L + T+FVG NG GKTN++EA+ + + R A+ A + R Sbjct: 4 RHLGLTDFRSWARVDLDLEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVATDAPLIRA 63 Query: 68 GSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ + ST EG E +++ LE R+ + ++N +R E+ LR Sbjct: 64 GAERAIVSTIVVNEGRE----LAVDLEITSGRANKA-RLNRSPVRSAREILGVLRAVLFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FDSS 181 P + G +RRR+LD + P D+++++R R LL D S Sbjct: 119 PEDLSLVRGDPGDRRRYLDELATTRRPALAGVRADYDKVVRQRTALLKTAAGARYRGDRS 178 Query: 182 WCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFL 232 ++E +A G + +RV+++ L + + Q + + S+ Sbjct: 179 VIDTLEVWDGHLAAHGAALVASRVKLVEELQPEVEKAYQLLAPASRPAAIRYRSSVEAIE 238 Query: 233 DGKFDQSFCALKEEYAKKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGS 288 D +S E Y L D R+ D+ R L+GPHR DL + D+ S Sbjct: 239 DAPGPESV----EFYEAALLDALARRRDAELERGVCLVGPHRDDLELRLGDQPAK-GFAS 293 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + + L L+ + G P+LLLD++ A LD +R AL V Q+ +T Sbjct: 294 HGESWSMALALRLGAYELLC-SDGVEPVLLLDDVFAELDTSRRRALA-TVAGSAEQVLVT 351 Query: 349 GT 350 Sbjct: 352 AA 353 >gi|90413730|ref|ZP_01221718.1| recombination protein F [Photobacterium profundum 3TCK] gi|90325199|gb|EAS41696.1| recombination protein F [Photobacterium profundum 3TCK] Length = 359 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 88/363 (24%), Positives = 166/363 (45%), Gaps = 18/363 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN + L + VG NG GK ++LEAI +L GR FR + V R Sbjct: 6 LIVKDFRNIEACDLALSPRFNFLVGANGSGKNSVLEAIHYLGHGRSFRSHLTSRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV L ++ + + + D + ++++ + + +L + L + + P Sbjct: 66 QELF-IHGRVLTDNQL-ELPLGINKKRDGTTE-VKVSGESGQKLSQLAQVLPLQLITPEG 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187 + G RR F+D VF I+P+ +RL + RN LL Y + S+ + Sbjct: 123 FELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIKRLTKQRNALLKTARSYRELSYW---D 179 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 ++A L +I++ R E + A+ E Q P ++ L+ + + + + E Sbjct: 180 QELAVLAEEISVWRDEYLIAVKQKAAEICQG-FLPEYEIQLSYYRGWEKETPYA----EL 234 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 K+ F+ D T+ GPH++DL + + S G+ K+++ + LA + Sbjct: 235 LKRNFE---RDCQLGYTVNGPHKADLRMKVAGTPVEDVL-SRGQLKLMVCALRLAQGLHL 290 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366 + TG I LLD+ ++ LD +R L + + + +Q+F++ +D+ + D +E K Sbjct: 291 TEATGKQCIYLLDDFASELDSHRRALLAQRLKETNAQVFISAISDEQITDMHDENGKMFH 350 Query: 367 ISN 369 + + Sbjct: 351 VEH 353 >gi|302336538|ref|YP_003801745.1| DNA replication and repair protein RecF [Olsenella uli DSM 7084] gi|301320378|gb|ADK68865.1| DNA replication and repair protein RecF [Olsenella uli DSM 7084] Length = 362 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 89/354 (25%), Positives = 163/354 (46%), Gaps = 16/354 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +RN+ + T+ G N GKTN +EA+ L+ G FR + A + R Sbjct: 5 VRSLGLRNWRNFDERNIALADGMTVLHGRNAAGKTNAIEALQMLTAGFSFRHSKPAQLVR 64 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S AR+EG + D+S +++ R +R N + D + + + + Sbjct: 65 -EDQSCALIAARLEGDGRVVDVSCEIDPTRRRFMR----NGKRCQAQDLPSTLMSVLFSP 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 + + G + RR LD + + + + + R + RNRLL + D + + Sbjct: 120 DDLSFVKRGAAY-RRDELDAFGRQANRSYSKILSAYVRSVEQRNRLLRQECPDLALLEAW 178 Query: 187 EAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHIKLSLTGF-LDGKFDQSFC 241 +A +A G + ++R+ + + + + E + E +S G L+ C Sbjct: 179 DASVALGGSTLLVSRIHLFERLVEYMCPIYREISEGEELGCRYISSLGLPLEDLSRDEIC 238 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A +AK+L + R + ++TL+GP R DL D + GS G+Q+ +++ + Sbjct: 239 A---AFAKRLCELRPQELRRQQTLVGPQRDDLSFTI-DGRDARSFGSQGQQRSIVLAWKM 294 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 A +L + TG P+LLLD++ + LDE +RNA+ R V G Q ++ T+ F Sbjct: 295 AEVKLSRDVTGEQPLLLLDDVMSELDETRRNAMTRFVQG-GIQAVVSTTNLGYF 347 >gi|153002882|ref|YP_001377207.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. Fw109-5] gi|166220696|sp|A7H677|RECF_ANADF RecName: Full=DNA replication and repair protein recF gi|152026455|gb|ABS24223.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. Fw109-5] Length = 369 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 86/356 (24%), Positives = 154/356 (43%), Gaps = 11/356 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +FRN A + L+ + T+ +G+NG GKTN+LEAI FL+ + R A A++ Sbjct: 1 MKLLSLAVQDFRNLAQVELLPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRTARLAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + +G G +++++ R ++ +D L Sbjct: 61 VRHGAQTGL-VAGDFDGPGGTRRVAVQVAP----GGRVALLDGKPQERLDAYFDGLAAVC 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRRFLDR F P ++ R +R RN L G + + Sbjct: 116 FAPDDLLLVKGGPEGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRGGSPEVE--A 173 Query: 185 SIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 S + G +I R +++ L+ S + P + + + + Sbjct: 174 SFRGPLVRAGARIVRRRRDLVEELAPRVSTAFREISGPAAPEARFAYRPAAGVQAEVGEA 233 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L E L + D T +GPH +L++ D A+ S G+Q+ +++ + + Sbjct: 234 ELAERLEHALAQRLERDRDRGFTSVGPHMDELVL-ALDGRGARAYASQGQQRALVLALKI 292 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 A + G P+LLLD++S+ LD K L + + +Q F+T TD+ + + Sbjct: 293 AEIENLRAALGRPPLLLLDDVSSELDPTKNRYLLAYLAALPAQAFLTTTDRRLIEP 348 >gi|153212933|ref|ZP_01948527.1| recF protein [Vibrio cholerae 1587] gi|124116159|gb|EAY34979.1| recF protein [Vibrio cholerae 1587] Length = 363 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 170/366 (46%), Gaps = 20/366 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P F R+ +D + + + + D S ++I + + +L + L + + Sbjct: 66 PELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184 P + + +RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R +N L + + E + + P + L + + DQ + ++ Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ ++ D T GP+++DL + + S G+ K+++ + +A Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351 Query: 364 FMRISN 369 +++ Sbjct: 352 TFHVAH 357 >gi|187732412|ref|YP_001882466.1| recombination protein F [Shigella boydii CDC 3083-94] gi|226737836|sp|B2TUS8|RECF_SHIB3 RecName: Full=DNA replication and repair protein recF gi|187429404|gb|ACD08678.1| DNA replication and repair protein RecF [Shigella boydii CDC 3083-94] Length = 357 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 161/364 (44%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D + T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRLLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|255016100|ref|ZP_05288226.1| putative DNA replication and repair protein [Bacteroides sp. 2_1_7] Length = 365 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 163/362 (45%), Gaps = 32/362 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N ++F + F G+NG+GKTN+L+AI +LS + + D Sbjct: 3 LKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKS--HVNTPDSQI 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121 I S V+G + E R++ ++ + D+L++H+ Sbjct: 61 INSDQ---DLCVVQG-------NYDYEGREEEIFCAMRRRQRKQFKRNKKEYDKLSEHIG 110 Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + LV P+ + G S ERRRFLD ++ D + +I + + + RN LL + Sbjct: 111 LLPLVMVSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSM 170 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D+S +E Q+ G + R +++ + + EY Q ++ G + Sbjct: 171 DASLYEVLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQ---------TICGSAEEVGLH 221 Query: 239 SFCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L+E E A KL R+ D + T G H+ +L + I GS G+ K L+ Sbjct: 222 YISQLEETELAGKLAMSRERDRILGYTSSGIHKDELEMTLGGYLIRRV-GSQGQNKTYLI 280 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFD 356 + LA ++ PILLLD+I LD + + ++V++ G QIF+T T++ D Sbjct: 281 ALKLAQFAFLNKRGRTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLD 340 Query: 357 SL 358 + Sbjct: 341 EI 342 >gi|313640122|gb|EFS04741.1| DNA replication and repair protein RecF [Listeria seeligeri FSL S4-171] Length = 370 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 46/364 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG ++ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRIVKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDPLLLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249 A++ + + R + I L + + + + LK EY A Sbjct: 186 ADVAINLTKRRADFIRKLE-----------------AYAAPIHSQISRGLETLKIEYKAS 228 Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 VTLAGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346 Query: 353 SVFD 356 S D Sbjct: 347 SGID 350 >gi|229542312|ref|ZP_04431372.1| DNA replication and repair protein RecF [Bacillus coagulans 36D1] gi|229326732|gb|EEN92407.1| DNA replication and repair protein RecF [Bacillus coagulans 36D1] Length = 370 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 79/352 (22%), Positives = 160/352 (45%), Gaps = 17/352 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +RNY +L + F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 LQELELHNYRNYETLTIPFENKVNVILGENAQGKTNLMEAIYVLALAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + +A+++G S+ LE + + + N + + + ++ + Sbjct: 63 -----WDAEYAKIKGRLHKTHGSVPLELTISKKGKKAKYNHIEQKKLSRYIGNMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P + G RRRF+D + I P + M F+++++ RN L + D + Sbjct: 118 PEDLNLVKGSPQVRRRFIDMEIGQISPVYLYDMSRFQKILQQRNHYLKQLQMKKQTDRTM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E KI + R E + L + + +++ ++ + + Sbjct: 178 LDILTEQLIEQAAKIVMRRFEFVRMLEEWARPIHHSISRGLEQLEIQYKPSVNVSEELDW 237 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVG 298 + + Y K + R+ + T+ GPHR DL +V+ D GS G+Q+ + Sbjct: 238 SKMIKSYENKFAEIREREIDRGVTMAGPHRDDLAFVVNGRD---VHTFGSQGQQRTAALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T Sbjct: 295 VKLAEIELIYSEIREYPILLLDDVLSELDDYRQSHLLNAIQG-RVQTFVTTT 345 >gi|310777808|ref|YP_003966141.1| DNA replication and repair protein RecF [Ilyobacter polytropus DSM 2926] gi|309747131|gb|ADO81793.1| DNA replication and repair protein RecF [Ilyobacter polytropus DSM 2926] Length = 376 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 84/357 (23%), Positives = 163/357 (45%), Gaps = 27/357 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I +N FRN L F ++ +F+G NG GKT+ILEA+ F + G+ FR ++ Sbjct: 1 MQISEINYVNFRNLKDNNLKFSSKFNLFLGKNGQGKTSILEAVYFSATGKSFRTPRQNEI 60 Query: 65 -----TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 R GS F E +S+KL + + N ++ D+ + Sbjct: 61 INHSRERTGS------FVVFEDSISKKTLSVKL----GKGKKEYSYNKKRVK-YDDFHGK 109 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 L I +P + +G RR F D + + + + + ++ +L++ RN+ L E + Sbjct: 110 LNIVSFIPEDISLLTGAPGVRRSFFDYEISQANKEYYQDLKNYTKLLKFRNKYLKEKKHN 169 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFD 237 + + + G +I R++ + +S L+ +K ++ ++L + FL G+ Sbjct: 170 DPMFDIYQNEFIKFGARIIKKRLDYVRNISILLNLNYRKLFDDKKELRLKYSCFL-GELK 228 Query: 238 QSFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + A L +E ++F K S L+GP + D I DK ++ S GE+K Sbjct: 229 KVETAQIEKLIQEKINQVFWQEKRYGFS---LVGPQKDDFIFLLNDKEAK-SYASQGEKK 284 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 ++ I L+ +I +PI ++D+IS++ D ++ ++ + Q+F++ T Sbjct: 285 SIVFSIKLSEIDMIIKEKKESPIFIIDDISSYFDSLRKESIIKYFKKRDIQLFISST 341 >gi|132249|sp|P13456|RECF_PSEPU RecName: Full=DNA replication and repair protein recF gi|45727|emb|CAA44365.1| recF protein [Pseudomonas putida] Length = 365 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 163/353 (46%), Gaps = 18/353 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F V+ EG +++ + E + + ++R I+ R +L + L + Sbjct: 61 IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGEFTIR---IDGQNARQA-QLAELLPLQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 116 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + E E L+L+ + D+ L Sbjct: 176 AAWDRELCLRSAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE---L 231 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302 +E A L ++M T GP R+DL + + A I S G+QK+V + I +A Sbjct: 232 QEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVGMRI-IA 284 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 285 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 337 >gi|296137755|ref|YP_003644998.1| DNA replication and repair protein RecF [Tsukamurella paurometabola DSM 20162] gi|296025889|gb|ADG76659.1| DNA replication and repair protein RecF [Tsukamurella paurometabola DSM 20162] Length = 401 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 96/366 (26%), Positives = 165/366 (45%), Gaps = 34/366 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++ + + T+FVG NG GKTN++EA+++L+ R ++ + R Sbjct: 3 VRRLRLHDFRSWDDVDIELGPGVTVFVGRNGFGKTNLIEALNYLATLGSHRVSTDQPLIR 62 Query: 67 IGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +G+ S + A V G E A++ I + R +++ +IN R +L L+ Sbjct: 63 VGTES-ATVLATVHNAGRELTAEVDI-VAGRANKA----RINTAPSRRPRDLLGILQSVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G RRRFLD + PR D++R+++ R LL Y + Sbjct: 117 FAPEDLSLVRGDPGGRRRFLDELAILRTPRIAAEKADYDRVLKQRTALLKTAYAAARRGG 176 Query: 181 ----SWCSSI---EAQMAELGVKINIARVEMINALSS-LIMEYVQKENFPHIKLSLTGFL 232 S +++ + Q+A G ++ AR+E++ AL L + Y PH + + + Sbjct: 177 PDAESMLATLDVWDVQLARFGAEMLAARLEVVAALQPHLTVAY--GALAPHSRAATMEYT 234 Query: 233 DGKFDQSF---------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 G FD F L+E L R + L+GPHR DL + ++ Sbjct: 235 SGLFDDEFGGDPATATVAELEEAMLAGLQRARSREIDRGVCLVGPHRDDLDLRLGNEPAK 294 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 S GE + + LA L+ G P+LLLD++ A LD +R AL + + Sbjct: 295 -GFASHGESWSYALALRLASLELL-RAGGSDPVLLLDDVFAELDTKRRTALADVAAET-E 351 Query: 344 QIFMTG 349 Q+ +T Sbjct: 352 QVIVTA 357 >gi|313122779|ref|YP_004033038.1| DNA replication and repair protein recf [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279342|gb|ADQ60061.1| DNA replication and repair protein recF [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 381 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 152/349 (43%), Gaps = 20/349 (5%) Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ +F Sbjct: 9 SGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREMI-----AF 63 Query: 73 FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 FA + G + I L + + +N V + + HL P + Sbjct: 64 GQDFASLAGRVHKRQLDIDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAILFSPEDLEL 123 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188 G RRRF+D I+P + + ++++ RN L + D + Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQMLQQRNNYLKQLARRQASDQVLLGVLTE 183 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 Q+A ++ R + L+ E + + +L + K + + + Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242 Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302 +KL D D RR T +GPHR DL K AH S G+Q+ + + + LA Sbjct: 243 QKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLA 299 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +LI TG PILLLD++ + LD++++ AL + +Q F+T TD Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QTQTFITTTD 347 >gi|91214642|ref|ZP_01251615.1| DNA replication and repair protein RecF [Psychroflexus torquis ATCC 700755] gi|91187069|gb|EAS73439.1| DNA replication and repair protein RecF [Psychroflexus torquis ATCC 700755] Length = 364 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 92/344 (26%), Positives = 162/344 (47%), Gaps = 28/344 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L++ ++N+ L L FD++ FVG NG+GKTN+L+AI L+ G+ SY + Sbjct: 3 IKKLSLINYKNFEQLTLEFDSKINCFVGKNGIGKTNVLDAIYHLAFGK-----SYFNPVT 57 Query: 67 IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F +EG + G + I + + + ++ N + ++++ H+ Sbjct: 58 SQNIKHEEEFFMLEGEFLNGEKEERIITSFKRGQG-KLIKRNG---KEYEKISDHIGTIP 113 Query: 125 LV---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEG 176 LV P+ D I G S RR+F+D ++ D + ++ + +++ RN LL Sbjct: 114 LVIISPTDRDLILEG-SETRRKFMDGVIAQGDKLYLNTLLKYNKIVSQRNALLKYFAVNR 172 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 FD + + Q+ E G I R + I ++ + Q+ + +SLT +F Sbjct: 173 TFDETSLEVYDDQIIEFGEIIFEKRQQFIKEFKPILKKRYQEISNSREDISLT--YKSQF 230 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + E + + L G K D + + G H+ DLI ++ GS G+QK L Sbjct: 231 NNG-----ESFKEVLKFGLKTDLQRQFSNFGTHKDDLIFKIKSHSVK-KFGSQGQQKSYL 284 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + + A + + G PILLLD+I LDED+ + + ++VTD Sbjct: 285 IALKFAQYDFLKSHYGVKPILLLDDIFDKLDEDRVSKIVKMVTD 328 >gi|213961968|ref|ZP_03390233.1| RecF protein [Capnocytophaga sputigena Capno] gi|213955321|gb|EEB66638.1| RecF protein [Capnocytophaga sputigena Capno] Length = 360 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 158/361 (43%), Gaps = 42/361 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ ++N S F FVGDNGVGKTN+L+AI L + + S R Sbjct: 3 LKQISVVNYKNIPSQTYAFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQNVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---------RVVDELN 117 G F +EG + ETR+++ V L+ + R+ D + Sbjct: 63 HGEE-----FYLIEG-------QFQNETREEQIVCSLKKGQKKVMKHNGKAYERLADHIG 110 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-- 175 K+ + D I G S RR+FLD ++ D + ++ + R++ RN LL + Sbjct: 111 KYPMVIISPSDRDLIVEG-SETRRKFLDSVISQTDRAYLELLLRYNRILLQRNTLLKQMA 169 Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTG 230 G F S + Q+A LG + R + + E + +I K + Sbjct: 170 ENGVFSVETLSIYDEQLAPLGQHLYEKRRAFMEEFLPVF-----SEQYAYISGGKERVNL 224 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + QS + A L + + D ++ T G H+ DL+ + + +GS G Sbjct: 225 QYESQLHQS------DLATLLRENAERDRSAQYTTSGIHKDDLLFE-IEGFPMKKYGSQG 277 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTG 349 +QK L+ + L+ +++ G PI+LLD+I LD+ + L ++VT Q+F+T Sbjct: 278 QQKSFLIALKLSQFKILQQELGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITD 337 Query: 350 T 350 T Sbjct: 338 T 338 >gi|228473756|ref|ZP_04058501.1| RecF protein [Capnocytophaga gingivalis ATCC 33624] gi|228274777|gb|EEK13600.1| RecF protein [Capnocytophaga gingivalis ATCC 33624] Length = 359 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 161/361 (44%), Gaps = 38/361 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I F+N S F +GDNGVGKTN L+AI L + + +S R Sbjct: 3 LKRLYILNFKNIESRDFSFSPSLNCLIGDNGVGKTNSLDAIYHLGMTKSYFSSSTLMNIR 62 Query: 67 IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL---R 121 +G + F + EG E S+K + + L+ N ++ ++L H+ Sbjct: 63 LGEDFYLIEGNFEK-EGREETVVCSVKKGQK-----KILKRNG---KLYEKLADHIGAFP 113 Query: 122 ISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----G 176 I + PS D I G S RR+FLD ++ + P + ++ + +++ RN LL Sbjct: 114 IVIISPSDRDLIHEG-SEARRKFLDGLLSQLYPSYLDTLLRYNKVLAQRNTLLKSFHERQ 172 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 Y D + Q++ G KI R+ + + + +E + H+ GK Sbjct: 173 YLDPDTLDIYDDQLSLYGNKIFQVRLAFLESFLPIF-----QEQYTHLS-------QGKE 220 Query: 237 DQSFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + S L +++ L + DS ++ T IG H+ DL++D + + S G+Q Sbjct: 221 EVSIRYESRLLGQDFKNLLKESFPQDSAAQYTTIGIHKDDLLLD-INGQLVKKFASQGQQ 279 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD 351 K L+ + LA + T PILLLD+I LD + L +VT Q+F++ TD Sbjct: 280 KSFLIALKLAQFHCLYKQTNTTPILLLDDIFDKLDSKRVAQLISLVTRPPFGQVFLSDTD 339 Query: 352 K 352 K Sbjct: 340 K 340 >gi|284028003|ref|YP_003377934.1| DNA replication and repair protein RecF [Kribbella flavida DSM 17836] gi|283807296|gb|ADB29135.1| DNA replication and repair protein RecF [Kribbella flavida DSM 17836] Length = 379 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 162/366 (44%), Gaps = 39/366 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + +FR+Y + T FVG NG GKTN++EAI + + R A+ A + R Sbjct: 3 VTALGLLDFRSYQQAEVELTPGVTAFVGPNGHGKTNLVEAIHYTATLGSHRVATDAPLVR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+P + T R + D+ I+LE ++ R +IN + E+ LR Sbjct: 63 AGAPRAIVRTEVRGQYER---DVVIELEINPGKANRA-RINRSPVPRPREVLGLLRTVLF 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---------TEG 176 P + G ERRRFLD ++ PR D++R+++ RN LL G Sbjct: 119 APEDLALVKGDPSERRRFLDELLTLRTPRMAGVRQDYDRVLKQRNSLLRSASMARRQNRG 178 Query: 177 YFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 ++E A +A G ++ R+E++ AL L+ + + G D Sbjct: 179 AAAEGQLRTLEIWDANLARTGAELLATRLELLEALRPLV-----AGGYDAVA---RGKGD 230 Query: 234 GKFD-------QSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKAI 282 + + + +E+ A+ L ++ D + R +L+GPHR D+++ D Sbjct: 231 ARLEYKSSVRLEPGVTSREQLAEVLLATVHEKRADELDRGVSLVGPHRDDVLLGLGDLPA 290 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S GE + + LA L+ G P+L+LD++ A LD +R+ L +V Sbjct: 291 K-GYASHGESWSFALALRLASYELL-RADGGEPVLILDDVFAELDTQRRDRLAELVAP-A 347 Query: 343 SQIFMT 348 Q+ +T Sbjct: 348 EQVLVT 353 >gi|188995431|ref|YP_001929683.1| putative DNA replication and repair protein RecF [Porphyromonas gingivalis ATCC 33277] gi|226737817|sp|B2RL41|RECF_PORG3 RecName: Full=DNA replication and repair protein recF gi|188595111|dbj|BAG34086.1| putative DNA replication and repair protein RecF [Porphyromonas gingivalis ATCC 33277] Length = 364 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 101/384 (26%), Positives = 164/384 (42%), Gaps = 44/384 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L+I F++ A+ F + VG+NG+GKTN+L+A+ FLS R V R Sbjct: 3 IEELHIVNFKSIAAADCRFSPKVNCLVGNNGMGKTNLLDALHFLSFCRSHLSVPDNMVVR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + R E +G I + L R + + L+ N + + H + + Sbjct: 63 HGEEMALLQGLYRDESGDG---IELLLSIRPGKH-KVLRRNKKEYERLSDHIGHFPLVIV 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P ++ G S ERRRF+D+ + DPR+ +I + R ++ RN +L + D + Sbjct: 119 SPQDYQLILGGSDERRRFMDQQLCQQDPRYLSALIQYNRHLQQRNTMLKQDRHDDALMDV 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +E QM +I R I + + + K+SL+ Sbjct: 179 LELQMGSYAAEIYNKRSRFIEDFLPVFNDLYSDISGSAEKVSLS---------------- 222 Query: 246 EYAKKLFDGRKMDSMSRRTL----------IGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 Y L DG ++ + RR+ G H+ +L + + GS G+ K Sbjct: 223 -YRSHLADGIPLEELLRRSRPKDYLLGFSSCGVHKDELEM-LLGGVLIRKIGSEGQNKTF 280 Query: 296 LVGIFLA---HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD 351 L+ + LA H +L + T PILLLD+I LD + + R+V G QIF+T T+ Sbjct: 281 LISMKLAQFRHQQLHGDET---PILLLDDIFDKLDATRVERIIRLVGGNGFGQIFITDTN 337 Query: 352 KSVFD----SLNETAKFMRISNHQ 371 + D S +E + I N Q Sbjct: 338 RKNLDEIIASWSEDYRLFEIENGQ 361 >gi|332288917|ref|YP_004419769.1| recombination protein F [Gallibacterium anatis UMN179] gi|330431813|gb|AEC16872.1| recombination protein F [Gallibacterium anatis UMN179] Length = 359 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 84/347 (24%), Positives = 156/347 (44%), Gaps = 28/347 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LNI FRN ++ L ++ +G NG GKT++LEAI FL GR F+ + + + Sbjct: 6 LNIQHFRNLKAVNLALNSGFNFLIGHNGSGKTSLLEAIYFLGHGRSFKSSVVNRIIQYEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F+ FA+VE ++ + ++ + + ++R IN + +L L + + P Sbjct: 66 AE-FTLFAKVEELQQSWALGLQKTRQGENTIR---INGKDGHKISDLAHLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD +F ++P+ RL++ RN L + D + + Q Sbjct: 122 LTLINGGPSYRRAFLDWGLFHLEPQFHHHWSAMNRLLKQRNAALQQ-VDDYALLKIWDQQ 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + +L +I+ R + L + I + + P +++ + F G +S +YA Sbjct: 181 LCQLAQQISEWRQRYADELKTEITQTC-RLFLPEVEIEVH-FYQGWNKES------DYAD 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-------STGEQKVVLVGIFLA 302 L + + D T+ GP R+D A+G S G+ K+++ + LA Sbjct: 233 ILIENFQRDKSVGYTMSGPQRADFKFR--------ANGMPAEDILSRGQLKLLMCALRLA 284 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + I L+D+ ++ LD +KR L + + + SQ+ +T Sbjct: 285 QGEHLMRQQQRHCIFLIDDFASELDPNKRALLAQRLKESQSQVIITA 331 >gi|325499507|gb|EGC97366.1| recombination protein F [Escherichia fergusonii ECD227] Length = 357 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 161/364 (44%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFI-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D + T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRLLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|13959485|sp|Q9KHU6|RECF_ACHLA RecName: Full=DNA replication and repair protein recF gi|8515413|gb|AAF75988.1|AF248639_7 RecF [Acholeplasma laidlawii PG-8A] Length = 349 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 88/347 (25%), Positives = 158/347 (45%), Gaps = 29/347 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + FRN + +++ + I G NGVGKT+ILE+I F + + R + D+ + Sbjct: 2 ITSIELRNFRNLENYKVLINRPLVIIQGLNGVGKTSILESIYFAATTKSHRSSVEKDMIQ 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P +A V+ +E I L R+ IN +R + + LR+ Sbjct: 62 YDKP-----YASVKLIEDSKLHEIVLTPNGKRTT----INKSEVRKISDYIGQLRVVMFA 112 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCS 184 P + G ERR FLD + + + R + ++++++ RN LL + D ++ + Sbjct: 113 PEDLMLIKGSPSERRYFLDMELMQVSKTYLRNLNSYKKILKQRNALLKKNRNLTDYTFLN 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF--CA 242 + Q+ ++G++I R + I AL+ + F I+ T + D + + + Sbjct: 173 ILGEQLYDVGIQIFDERQKFIEALN---------QKFKTIQ---TKYKDFEVEMLYEPNV 220 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA-HGSTGEQKVVLVGIFL 301 KE + K L +K D M T G H+ D + Y K + S G +++++ + L Sbjct: 221 TKENFLKHLKTKQKQDIMYETTTAGIHKDDFKLLY--KGLNAKDSASQGTSRLIVIELKL 278 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 A I T ILLLD++ + LD +++N LF Q+F+T Sbjct: 279 ALLEWIKEVTKTDAILLLDDVLSELDLERQN-LFMSQLSKNHQVFIT 324 >gi|152977691|ref|YP_001343320.1| recombination protein F [Actinobacillus succinogenes 130Z] gi|171472900|sp|A6VK88|RECF_ACTSZ RecName: Full=DNA replication and repair protein recF gi|150839414|gb|ABR73385.1| DNA replication and repair protein RecF [Actinobacillus succinogenes 130Z] Length = 358 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 89/371 (23%), Positives = 160/371 (43%), Gaps = 20/371 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I FRN A++ L FD VG+NG GKT++LE+I +L GR F+ + + Sbjct: 1 MAISRLIIENFRNLAAVDLEFDHGFNFLVGNNGSGKTSLLESIFYLGHGRSFKSSVSTRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P +F+ R+ E + S+ L+ + + ++IN + +L L + Sbjct: 61 ITYDKP-YFTLHGRI--WEQQHEWSVGLQKQRKEGLTLVKINGEDGNKISDLAHLLPMQM 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F P RL++ RN L + Y D + Sbjct: 118 ITPEGLTLLNGGPSYRRAFLDWGLFHHRPNFHSAWSALNRLLKQRNAALQQTY-DYTDLQ 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++++L ++++ R + AL I E + P + + ++ F Q + Sbjct: 177 VWDVELSKLAHQVSLWRTDYAEALRPEI-EQTCRLFLPELDIQVS------FHQGWDK-N 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 229 TDYGDLLRENFARDKHIGYTVSGPQKADFRFKANGFPVEDVL-SRGQLKLLMCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + + I L+D+ ++ LDE KR L + SQ+F+T E K Sbjct: 288 EHLMVQKNRSCIFLIDDFASELDETKRGLLAERLRQSHSQVFVTAITA-------EQLKQ 340 Query: 365 MRISNHQALCI 375 M+ NH+ + Sbjct: 341 MQPENHRTFSV 351 >gi|300811994|ref|ZP_07092450.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497020|gb|EFK32086.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 381 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 153/349 (43%), Gaps = 20/349 (5%) Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ G F Sbjct: 9 SGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREMIAFGQ-DF 67 Query: 73 FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 S RV + D+ I + + + +N V + + HL P + Sbjct: 68 ASLAGRVHKRQLDLDLRIVISKKG----KSAWVNRVEQARLSKYVGHLNAILFSPEDLEL 123 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188 G RRRF+D I+P + + +L++ RN L + D + Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQVLLGVLTE 183 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 Q+A ++ R + L+ E + + +L + K + + + Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242 Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302 +K+ D D RR T +GPHR DL K AH S G+Q+ + + + LA Sbjct: 243 QKMLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLA 299 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +LI TG PILLLD++ + LD++++ AL + +Q F+T TD Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QTQTFITTTD 347 >gi|332345691|gb|AEE59025.1| DNA replication and repair protein RecF [Escherichia coli UMNK88] Length = 357 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 91/362 (25%), Positives = 161/362 (44%), Gaps = 17/362 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEA 188 + +G RR FLD F +P + +RL++ RN L + +++ + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTHYEQ--LRPWDK 179 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ L +I+ R E +++ + + K+ P L+ + F G ++ EYA Sbjct: 180 ELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------EYA 231 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + L + D T GPH++DL + D A S G+ K+++ + LA ++ Sbjct: 232 EVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K + Sbjct: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 Query: 368 SN 369 Sbjct: 351 EK 352 >gi|24114990|ref|NP_709500.1| recombination protein F [Shigella flexneri 2a str. 301] gi|30065008|ref|NP_839179.1| recombination protein F [Shigella flexneri 2a str. 2457T] gi|51316304|sp|Q7BZ80|RECF_SHIFL RecName: Full=DNA replication and repair protein recF gi|24054242|gb|AAN45207.1| Rec protein [Shigella flexneri 2a str. 301] gi|30043269|gb|AAP18990.1| Rec protein [Shigella flexneri 2a str. 2457T] gi|281603073|gb|ADA76057.1| DNA replication and repair protein recF [Shigella flexneri 2002017] gi|313647708|gb|EFS12156.1| DNA replication and repair protein recF [Shigella flexneri 2a str. 2457T] gi|332750521|gb|EGJ80930.1| DNA replication and repair protein recF [Shigella flexneri K-671] gi|332750692|gb|EGJ81100.1| DNA replication and repair protein recF [Shigella flexneri 4343-70] gi|332751786|gb|EGJ82184.1| DNA replication and repair protein recF [Shigella flexneri 2747-71] gi|332764071|gb|EGJ94308.1| DNA replication/repair protein RecF [Shigella flexneri 2930-71] gi|332997495|gb|EGK17111.1| DNA replication and repair protein recF [Shigella flexneri K-218] gi|333013217|gb|EGK32590.1| DNA replication and repair protein recF [Shigella flexneri K-304] Length = 357 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ M+ K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAA-DMDDTCKQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|260495358|ref|ZP_05815485.1| recombination protein F [Fusobacterium sp. 3_1_33] gi|260197136|gb|EEW94656.1| recombination protein F [Fusobacterium sp. 3_1_33] Length = 369 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/351 (22%), Positives = 164/351 (46%), Gaps = 15/351 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +LN FRN + + + +F G N GKT++LEAI + S G F+ +++ + Sbjct: 6 ITYLN---FRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRISWL 125 F S+ + + +A+ I + ++ + + N I D K + I Sbjct: 63 YNFEEFISS---ISYQDYVANNKISVRFKNITGAKKEFFFNKKRISQTDFYGK-INIIAY 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 119 IPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243 E + + I R+E + +LS ++ ++Y + N + L LD + + Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTVEMI 238 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +E K++ + + + +L+GPH+ D +++ + I+ S GE+K ++ + L Sbjct: 239 QENLKKEISQKKYQEDKYKFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKL 295 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + +I P++++D+I+++ DED+R ++ Q+ ++ TDK Sbjct: 296 SEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346 >gi|110807610|ref|YP_691130.1| recombination protein F [Shigella flexneri 5 str. 8401] gi|123342286|sp|Q0SYP0|RECF_SHIF8 RecName: Full=DNA replication and repair protein recF gi|110617158|gb|ABF05825.1| ssDNA and dsDNA binding, ATP binding [Shigella flexneri 5 str. 8401] Length = 357 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGCVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ M+ K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAA-DMDDTCKQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|34763294|ref|ZP_00144252.1| DNA replication and repair protein recF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887042|gb|EAA24155.1| DNA replication and repair protein recF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 369 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 80/352 (22%), Positives = 162/352 (46%), Gaps = 17/352 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +LN FRN + + + +F G N GKT++LEAI + S G F+ +++ + Sbjct: 6 ITYLN---FRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRISWL 125 F S+ + + +A+ I + ++ + + N I D K + I Sbjct: 63 YNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGK-VNIIAY 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 119 IPEDIILINGSPRHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243 E + + I R+E + +LS ++ ++Y + N + L LD + + Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEMI 238 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD---LIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +E K++ + + + +L+GPH+ D L+ Y K S GE+K ++ + Sbjct: 239 QESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKV----SASQGEKKSIIFSLK 294 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+ +I P++++D+I+++ DED+R ++ Q+ ++ TDK Sbjct: 295 LSEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346 >gi|50953929|ref|YP_061217.1| recombination protein F [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648822|sp|Q6AHN3|RECF_LEIXX RecName: Full=DNA replication and repair protein recF gi|50950411|gb|AAT88112.1| DNA replication and repair protein RecF [Leifsonia xyli subsp. xyli str. CTCB07] Length = 385 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 179/370 (48%), Gaps = 34/370 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++++FRNY + + F+A +FVG NG GKTN++E++ +LS R +S + Sbjct: 1 MRVTHLSLTDFRNYGTAEVHFEAGANLFVGRNGQGKTNLVESLGYLSALGSHRVSSDQAM 60 Query: 65 TRIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G+ AR+ E E L ++ + + + Q+N I+ EL ++ Sbjct: 61 IRQGA-ELAVVRARIQHEARELLVEVQL-----NRGAANRAQVNRAAIK-PRELPRYFSS 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFD 179 P + G RRRFLD+++ +PR + ++ER+++ RN LL F Sbjct: 114 VLFAPEDLALVRGEPGVRRRFLDQLLIQRNPRLSAVIAEYERVLKQRNTLLKSARASRFR 173 Query: 180 SSWCSSIEA---QMAELGVKINIARVEMINALSS-LIMEY---VQKENFPHI--KLSLTG 230 +++ ++ LG ++ AR++++ LS+ L+ Y ++ P + +L+++G Sbjct: 174 EDQLGTLDIWDDRLLTLGAELINARLDLMARLSNPLVAAYRSVAGDDHHPRLLPQLTISG 233 Query: 231 -FLDGKFDQSFCALKEEYA------KKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAI 282 ++ + D S + + ++ G + + R TL+GPHR D++ + + Sbjct: 234 AHVEDEDDDSVADMTSAFGDTTDVFRQALAGVRWKELERGLTLVGPHRDDVLFE-LNGLP 292 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLI--SNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + S GE + + LA A L+ + TG P+L+LD++ A LD +R L V Sbjct: 293 AKGYASHGESWSFALALKLASAELLRRESVTG-DPVLILDDVFAELDWARRRMLATTVAG 351 Query: 341 IGSQIFMTGT 350 Q+ +T Sbjct: 352 Y-EQVLITAA 360 >gi|15839375|ref|NP_334412.1| recombination protein F [Mycobacterium tuberculosis CDC1551] gi|148821194|ref|YP_001285948.1| recombination protein F [Mycobacterium tuberculosis F11] gi|215405987|ref|ZP_03418168.1| recombination protein F [Mycobacterium tuberculosis 02_1987] gi|215413857|ref|ZP_03422522.1| recombination protein F [Mycobacterium tuberculosis 94_M4241A] gi|215425189|ref|ZP_03423108.1| recombination protein F [Mycobacterium tuberculosis T92] gi|215432908|ref|ZP_03430827.1| recombination protein F [Mycobacterium tuberculosis EAS054] gi|215448276|ref|ZP_03435028.1| recombination protein F [Mycobacterium tuberculosis T85] gi|218755719|ref|ZP_03534515.1| recombination protein F [Mycobacterium tuberculosis GM 1503] gi|219555774|ref|ZP_03534850.1| recombination protein F [Mycobacterium tuberculosis T17] gi|253796918|ref|YP_003029919.1| DNA replication and repair protein recF [Mycobacterium tuberculosis KZN 1435] gi|254233408|ref|ZP_04926734.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis C] gi|254366463|ref|ZP_04982507.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis str. Haarlem] gi|254548931|ref|ZP_05139378.1| recombination protein F [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260198987|ref|ZP_05766478.1| recombination protein F [Mycobacterium tuberculosis T46] gi|260203140|ref|ZP_05770631.1| recombination protein F [Mycobacterium tuberculosis K85] gi|289441370|ref|ZP_06431114.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T46] gi|289552253|ref|ZP_06441463.1| DNA replication and repair protein recF [Mycobacterium tuberculosis KZN 605] gi|289567885|ref|ZP_06448112.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T17] gi|289572579|ref|ZP_06452806.1| DNA replication and repair protein recF [Mycobacterium tuberculosis K85] gi|289747773|ref|ZP_06507151.1| recombination protein F [Mycobacterium tuberculosis 02_1987] gi|289748465|ref|ZP_06507843.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T92] gi|289756062|ref|ZP_06515440.1| recombination protein F [Mycobacterium tuberculosis EAS054] gi|289760100|ref|ZP_06519478.1| recombination protein F [Mycobacterium tuberculosis T85] gi|289764118|ref|ZP_06523496.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis GM 1503] gi|294995611|ref|ZP_06801302.1| recombination protein F [Mycobacterium tuberculosis 210] gi|297632471|ref|ZP_06950251.1| recombination protein F [Mycobacterium tuberculosis KZN 4207] gi|297729440|ref|ZP_06958558.1| recombination protein F [Mycobacterium tuberculosis KZN R506] gi|298527401|ref|ZP_07014810.1| recF protein [Mycobacterium tuberculosis 94_M4241A] gi|306778821|ref|ZP_07417158.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu002] gi|306782609|ref|ZP_07420931.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu003] gi|306786977|ref|ZP_07425299.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu004] gi|306791533|ref|ZP_07429835.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu005] gi|306795597|ref|ZP_07433899.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu006] gi|306801572|ref|ZP_07438240.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu008] gi|306805781|ref|ZP_07442449.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu007] gi|306970178|ref|ZP_07482839.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu009] gi|313656769|ref|ZP_07813649.1| recombination protein F [Mycobacterium tuberculosis KZN V2475] gi|13879044|gb|AAK44226.1| recF protein [Mycobacterium tuberculosis CDC1551] gi|124603201|gb|EAY61476.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis C] gi|134151975|gb|EBA44020.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis str. Haarlem] gi|148719721|gb|ABR04346.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis F11] gi|253318421|gb|ACT23024.1| DNA replication and repair protein recF [Mycobacterium tuberculosis KZN 1435] gi|289414289|gb|EFD11529.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T46] gi|289436885|gb|EFD19378.1| DNA replication and repair protein recF [Mycobacterium tuberculosis KZN 605] gi|289537010|gb|EFD41588.1| DNA replication and repair protein recF [Mycobacterium tuberculosis K85] gi|289541638|gb|EFD45287.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T17] gi|289688301|gb|EFD55789.1| recombination protein F [Mycobacterium tuberculosis 02_1987] gi|289689052|gb|EFD56481.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T92] gi|289696649|gb|EFD64078.1| recombination protein F [Mycobacterium tuberculosis EAS054] gi|289711624|gb|EFD75640.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis GM 1503] gi|289715664|gb|EFD79676.1| recombination protein F [Mycobacterium tuberculosis T85] gi|298497195|gb|EFI32489.1| recF protein [Mycobacterium tuberculosis 94_M4241A] gi|308328158|gb|EFP17009.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu002] gi|308332532|gb|EFP21383.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu003] gi|308336275|gb|EFP25126.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu004] gi|308339880|gb|EFP28731.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu005] gi|308343893|gb|EFP32744.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu006] gi|308347677|gb|EFP36528.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu007] gi|308351595|gb|EFP40446.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu008] gi|308352302|gb|EFP41153.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu009] gi|326905762|gb|EGE52695.1| DNA replication and repair protein recF [Mycobacterium tuberculosis W-148] gi|328456709|gb|AEB02132.1| DNA replication and repair protein recF [Mycobacterium tuberculosis KZN 4207] Length = 385 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 30/363 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A + L T+FVG NG GKTN++EA+ + + R ++ + R Sbjct: 3 VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+ + ST +G E D+ I V ++N +R ++ LR Sbjct: 63 VGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G +RRR+LD + P ++ER++R R LL Sbjct: 118 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G FD+ ++++AE G ++ AR++++N L+ + + Q P + + G+ Sbjct: 178 GVFDT--LEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLA-PESRSASIGYRASM 234 Query: 232 -LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHG 287 + G +QS + + D+ R L+GPHR DLI+ D+ Sbjct: 235 DVTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFA 293 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q+ + Sbjct: 294 SHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLV 351 Query: 348 TGT 350 T Sbjct: 352 TAA 354 >gi|89891571|ref|ZP_01203075.1| DNA replication and repair protein RecF [Flavobacteria bacterium BBFL7] gi|89516118|gb|EAS18781.1| DNA replication and repair protein RecF [Flavobacteria bacterium BBFL7] Length = 359 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 173/362 (47%), Gaps = 40/362 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + FL++ +++++S D + FVG+NGVGKTN+L+AI L+ F ++ + + Sbjct: 1 MHLDFLSLVNYKSFSSAEFELDEKINCFVGNNGVGKTNVLDAIYHLA----FAKSYFNPI 56 Query: 65 TRIG---SPSFF---STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 T FF F + E E + +S K + R ++ N + ++L++ Sbjct: 57 TVQNIKHDQDFFVINGNFQKKENQEKVV-VSAKRGHK-----RVVKRNG---KAYEKLSE 107 Query: 119 HLRISWLV---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173 H+ + LV P+ D I G S RRRF+D ++ + + +++ + +L++ RN LL Sbjct: 108 HIGLIPLVIISPADRDLIIEG-SDTRRRFMDSVISLDNQDYLNQLVTYNKLIQQRNALLK 166 Query: 174 ---TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 FD + + Q+ L I+ RV+ + + + + +Y + +I S Sbjct: 167 YFQANRTFDRAGLEVYDEQLIVLATFIHKTRVQFLESFTPIFKKY-----YAYISQSEED 221 Query: 231 F-LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + K D + A KE + L + D + + G H+ DL A+ +GS Sbjct: 222 VNIYYKSDLNDTAAKEVFESAL----QKDMQLQYSSAGTHKDDLYFLLNGHAVK-KYGSQ 276 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMT 348 G+QK L + LA I + +G PILLLD+I LDE++ + + +V D Q+F++ Sbjct: 277 GQQKSFLTALKLAQFEFIKSQSGTVPILLLDDIFDKLDENRVSQIINMVNDEQFGQLFIS 336 Query: 349 GT 350 T Sbjct: 337 DT 338 >gi|256021282|ref|ZP_05435147.1| recombination protein F [Shigella sp. D9] gi|331670544|ref|ZP_08371383.1| DNA replication and repair protein RecF [Escherichia coli TA271] gi|332282513|ref|ZP_08394926.1| gap repair protein [Shigella sp. D9] gi|331062606|gb|EGI34526.1| DNA replication and repair protein RecF [Escherichia coli TA271] gi|332104865|gb|EGJ08211.1| gap repair protein [Shigella sp. D9] Length = 357 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 161/364 (44%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ +++ K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMVDTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|320174826|gb|EFW49949.1| DNA recombination and repair protein RecF [Shigella dysenteriae CDC 74-1112] Length = 357 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|258545194|ref|ZP_05705428.1| DNA replication and repair protein RecF [Cardiobacterium hominis ATCC 15826] gi|258519546|gb|EEV88405.1| DNA replication and repair protein RecF [Cardiobacterium hominis ATCC 15826] Length = 359 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 88/348 (25%), Positives = 154/348 (44%), Gaps = 19/348 (5%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +++ L + RN A+ L + T+ G NG GKT +LEAI L G+ FR + Sbjct: 3 RLRQLRLDNHRNLATTTLELHPRCTLISGKNGSGKTALLEAIYLLGRGKSFRENQTRHLI 62 Query: 66 RIGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 P + AR+E G E L + I+ R+ R L+++ ++ + L + Sbjct: 63 AHDQP-YLRLIARIEKNGEEHL--LGIEKSAREHR----LRLDGQNLKNLAALAALTPVQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 L RRR+LD ++ DP + ++ RN L + + + Sbjct: 116 ILNSDNFAHIDQGPEHRRRYLDYGLYYHDPAFLPAWQRYNYALKNRNAALRQNWRAAD-L 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + E G +I+ R + L + Y H +L + + + + A Sbjct: 175 APWNHILGETGTQIDTLRRAYLEKLEDTLNTY-------HAELGGYERIHIHYQRGWPA- 226 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + A L + D++ + T G HR+DL + D H S G+QK ++ + LA Sbjct: 227 GQPLAALLDANNERDALLKHTRDGIHRADLRY-HADGRDIAHHYSRGQQKTLICALILAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 RLI+ +G API+L+D+I+A LD ++ L + + D SQ+++T D Sbjct: 286 TRLITADSGTAPIILIDDIAAELDRARQEKLLQFLADSDSQLYITHID 333 >gi|161936342|ref|YP_128267.2| recombination protein F [Photobacterium profundum SS9] Length = 359 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 87/363 (23%), Positives = 167/363 (46%), Gaps = 18/363 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN + L + VG NG GKT++LEAI +L GR FR + V R Sbjct: 6 LIVKDFRNIEACDLALSPRFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV L ++ + + + D + ++++ + + +L + L + + P Sbjct: 66 QELF-IHGRVLTNNQL-ELPLGINKKRDGTTE-VKVSGESGQKLSQLAQVLPLQLITPEG 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187 + G RR F+D VF I+P+ +RL + RN LL Y + S+ + Sbjct: 123 FELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIKRLTKQRNALLKTARSYRELSYW---D 179 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 ++A L +I++ R E + A+ E Q P ++ L+ + + + + E Sbjct: 180 QELAVLAEEISVWRDEYLIAVKQKAAEICQG-FLPEYEIQLSYYRGWEKETPYA----EL 234 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 K+ F+ D T+ GPH++DL + + S G+ K+++ + LA + Sbjct: 235 LKRNFE---RDCQLGYTVNGPHKADLRMKVSGTPVEDVL-SRGQLKLMVCALRLAQGLHL 290 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366 + TG I L+D+ ++ LD +R L + + + +Q+F++ +++ + D +E K Sbjct: 291 TEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISNEQIADMHDENGKMFH 350 Query: 367 ISN 369 + + Sbjct: 351 VEH 353 >gi|110644043|ref|YP_671773.1| recombination protein F [Escherichia coli 536] gi|191170384|ref|ZP_03031937.1| DNA replication and repair protein RecF [Escherichia coli F11] gi|300983651|ref|ZP_07176692.1| recombination protein F [Escherichia coli MS 200-1] gi|123343429|sp|Q0TB07|RECF_ECOL5 RecName: Full=DNA replication and repair protein recF gi|110345635|gb|ABG71872.1| DNA replication and repair protein RecF [Escherichia coli 536] gi|190909192|gb|EDV68778.1| DNA replication and repair protein RecF [Escherichia coli F11] gi|300306874|gb|EFJ61394.1| recombination protein F [Escherichia coli MS 200-1] gi|324012739|gb|EGB81958.1| recombination protein F [Escherichia coli MS 60-1] Length = 357 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSGGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|119471660|ref|ZP_01614045.1| gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction [Alteromonadales bacterium TW-7] gi|119445439|gb|EAW26726.1| gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction [Alteromonadales bacterium TW-7] Length = 364 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 152/344 (44%), Gaps = 19/344 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRN +L L I G+NG GKT++LEAI +LS G+ FR + + Sbjct: 1 MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTPKHKSI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 F + G + + D+SI + R L+I R + EL + + + Sbjct: 61 IAHQQEQFV-----IHGRKMVHDLSIPIGISKTRLGETNLKIQGKASRKISELAQLMPVQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDS 180 + P +F G ERR+FLD +F ++ F ++++ RN LL + YFD Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFYLWQSFNKVLKQRNALLKSKPKNYFDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + L +IN R+ I+ + + E L+L L+ F+ + Sbjct: 176 --IKFWDKEFVRLAEEINKLRLAYISRFKQQFFDKMCSE------LTLIRDLEMTFNAGW 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E A L + D+ T GPH++D ++ S G+ K++L + Sbjct: 228 KE-NESLADALEQNFERDARQGFTSKGPHKADFSFSVAGNSVENTF-SRGQLKLLLYALK 285 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 + LI + T ILL+D++ + L ED + + ++++ SQ Sbjct: 286 VTQNSLIESETDKQSILLIDDLPSELGEDTKEKVGQLLSHCSSQ 329 >gi|85711019|ref|ZP_01042080.1| Recombinational DNA repair ATPase [Idiomarina baltica OS145] gi|85695423|gb|EAQ33360.1| Recombinational DNA repair ATPase [Idiomarina baltica OS145] Length = 362 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 99/358 (27%), Positives = 164/358 (45%), Gaps = 31/358 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L FRN+ + G NG GKT+++EAI L GR FR Y + Sbjct: 1 MRLNALKAINFRNFKRFDFEPSPYANLIGGLNGSGKTSLIEAIYLLGFGRSFRPGGYKQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 S S F+ F E M ++ I L + V+ L++N + + E+ + + + Sbjct: 61 IN-SSESDFTVFC--EAMSDRDEVFKIGLRRTSEGEVQ-LRLNGETVHKLSEIARFIPVQ 116 Query: 124 WLVP-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYF--D 179 P S++ I G S+ RR+F+D VF ++ + + + ++ RN LL ++G D Sbjct: 117 LFTPESVELILGGPSL-RRQFMDWGVFHVEHTFYELWVAYTKSLKQRNFLLRSKGDVRQD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLDGKFD 237 S W AQ+A LG +I R+ I + + I + F P +KL + G G +D Sbjct: 176 SFW----RAQLARLGEEIIQLRIRYIQEIENFI---TKSATFFLPDVKLEV-GLKQG-WD 226 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVV 295 QS A L + D T IGPH++D L VD D + + S G+ K++ Sbjct: 227 QSLS-----LADALDKHTERDRRYGHTSIGPHKADIKLTVDGIDAKLVL---SRGQLKLL 278 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA A + + I L+D+I++ LDE + + + Q F+T D S Sbjct: 279 VASLKLAQAAHYNEKKDSSCIFLVDDITSELDEANQKKFITALEGLKCQSFITAIDSS 336 >gi|172039683|ref|YP_001799397.1| recombination protein F [Corynebacterium urealyticum DSM 7109] gi|171850987|emb|CAQ03963.1| DNA replication and repair protein RecF [Corynebacterium urealyticum DSM 7109] Length = 472 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 99/400 (24%), Positives = 174/400 (43%), Gaps = 53/400 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++ L L D T+F G NG GKTNI+EA+ +L+ R + + + R Sbjct: 3 VRSLELHDFRSWRELSLQLDPGVTVFSGPNGHGKTNIVEALGYLAHLGSHRVNTDSALVR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + S A E A I+I R S R IN + EL +R + Sbjct: 63 EGQQIARVSATAVNHNRELTAHIAI----RGHGSNRA-HINRTQLATTSELLGIVRTTLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178 P + G +RR+FLD ++ A PR D+++ +R RN LL + Sbjct: 118 SPEDLALVRGEPEQRRKFLDEIMVARYPRLAAVKADYDKSLRQRNALLRNNAYALRIAPE 177 Query: 179 -DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSL 228 D+ S++ +AQ+A LG +I ARV++ + L+ + + + E+ P ++ Sbjct: 178 NDAERLSALATLDVWDAQLAALGGQIMSARVQIAHDLAPHVAQTYARLAPESRP-AHMAY 236 Query: 229 TGFLDGKFDQSFCALKEE------------YAKKLFDGRKMDSMSRR---------TLIG 267 T +D Q L E + ++ + + + +R+ TLIG Sbjct: 237 TSTVDADLAQVGVLLGEAELERDPAAELALLSPEVAEATLLQAYARKRTQEVDRGTTLIG 296 Query: 268 PHRSDLIVDYCDKAIT--IAHGSTGEQKVVL-VGIFLAHARLISNTTGFAPILLLDEISA 324 PHR DL++ + +HG + + L +G F + G P+++LD++ A Sbjct: 297 PHRDDLVLMLGTQPAKGFASHGESWSFALALRLGAF-----FMQREDGVEPVVILDDVFA 351 Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 LD +R L ++T+ + + + L + A F Sbjct: 352 ELDSSRRQQLVGLLTEAEQVLITAAVGEDIPAELRDIATF 391 >gi|313205904|ref|YP_004045081.1| DNA replication and repair protein recf [Riemerella anatipestifer DSM 15868] gi|312445220|gb|ADQ81575.1| DNA replication and repair protein RecF [Riemerella anatipestifer DSM 15868] Length = 360 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 102/375 (27%), Positives = 170/375 (45%), Gaps = 30/375 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L ++ F+N+ F ++ FVG+NGVGKTNIL+A+ +LS G+ F S DV Sbjct: 3 IKKLYLTNFKNHQERVFDFSSEINSFVGNNGVGKTNILDALHYLSVGKSFLGNS--DVNN 60 Query: 67 I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDELNKHLRISW 124 I FF+ A V+ E + I ++++D + + ++ ND R+ D + L Sbjct: 61 ILTGEDFFTLEAVVDDGEKETILKI-IQSKDAK--KLVKKNDKSYARLSDHIG-FLPSVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180 + P + S RRRFLD M+ +D + ++ +++ ++ RN LL YFD Sbjct: 117 ISPYDANLISDSGESRRRFLDAMISQVDAEYLHSIMQYQKALKQRNALLKSFAKNRYFDK 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + + I R I L + + ++ + D + Sbjct: 177 DSLEIYDEPLCQYAGVIFEKRSLFITQLLPTFLHF----------YNMISNGKEEVDIVY 226 Query: 241 CALKEEY--AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + EE A+ L + D + T G H+ +L + I GS G+QK L+ Sbjct: 227 QSDLEEQTMAEVLSQNVEKDRVLTYTSKGIHKDELRFEMSGDLIK-KIGSQGQQKSFLIA 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK----S 353 + LA I TG P+LLLD+I LD+ + L +V + QIF+T T K + Sbjct: 286 LKLAQINRIKEITGKTPLLLLDDIFDKLDDRRVAQLIELVNKEHFGQIFITDTHKERTEA 345 Query: 354 VFDSLNETAKFMRIS 368 V ++NE ++ I+ Sbjct: 346 VVKNINEESRIFEIT 360 >gi|284007065|emb|CBA72340.1| dna replication and repair protein [Arsenophonus nasoniae] Length = 362 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 96/356 (26%), Positives = 162/356 (45%), Gaps = 14/356 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L +G NG GKT+ILEAI L GR FR A V R Sbjct: 6 LLIRDFRNIESADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQAARVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 +F R+ +E + ++++ L ++D ++IN + EL K L + + P Sbjct: 66 DNFI-LHGRLVPLEPESRELTLGL-SKDRNGDSKVRINGSDGHKIAELAKLLPMQLITPE 123 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 + +G RR FLD F +P+ D +RL++ RN L + + S + Sbjct: 124 GFTLLNGGPKYRRAFLDWGCFHNEPQFFAAWSDLKRLLKQRNAALRQATRYNE-LSHWDY 182 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ L KI+ R I ++ I E K+ P LS++ Q + +Y+ Sbjct: 183 ELIPLAHKISEWRANYIAGIAKDI-ENTCKQFLPEFSLSISY-------QRGWDKETDYS 234 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L + D M T +GPH++DL + A+ S G+ K+++ + LA + Sbjct: 235 DILVRQFERDRMLTYTALGPHKADLRLRVGGIAVEDIL-SRGQLKLLMCALKLAQGEYFT 293 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 +G + LLD+ ++ LD+D+R L + +Q+F++ T V D L+ ++ Sbjct: 294 RQSGQRCLYLLDDFASELDKDRRQLLAERLKATQAQVFVSAITIAQVKDMLDGNSR 349 >gi|330827703|ref|YP_004390655.1| DNA replication and repair protein recF [Aeromonas veronii B565] gi|328802839|gb|AEB48038.1| DNA replication and repair protein recF [Aeromonas veronii B565] Length = 367 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 20/345 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +S+FRN L I VG NG GKT++LEAI +L GR FR V R G Sbjct: 6 LQLSDFRNIQQASLKLSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRVIRQGE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + F+ FA+ E +EG + I L +D L+I + + +L + L + + P Sbjct: 66 RA-FTLFAQCE-LEG-RQVPIGL-AKDKSGETQLKIAGAQAQRLADLVELLPVQLIHPDG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR +LD VF +P RL++ RN LL + + + + Sbjct: 122 FNLLTGGPQARRAWLDWGVFHQEPTFFALWGRVRRLLKQRNALLRQST-QYRQLAFWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + LG ++ R A++ LI E + + P +SL + + D L E Sbjct: 181 LVRLGGELAEFRASYCQAITPLIKE-MTADFLPEFDISLGFYRGWEKDTPLGDLLEA--- 236 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG---STGEQKVVLVGIFLAHARL 306 G + D T +GP ++D+ + KA + S G+ K+++ + LA Sbjct: 237 ----GFERDRALGYTGVGPQKADVRL----KANGVPAQDILSRGQLKLLVCAMRLAQGLY 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 ++ + I L+D+ ++ LD DKR L + SQ+F+T D Sbjct: 289 LNQHSSRGCIFLIDDFASELDVDKRRLLAARLKQCASQVFITAID 333 >gi|309795751|ref|ZP_07690166.1| recombination protein F [Escherichia coli MS 145-7] gi|308120630|gb|EFO57892.1| recombination protein F [Escherichia coli MS 145-7] Length = 357 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|15607145|ref|NP_214517.1| recombination protein F [Mycobacterium tuberculosis H37Rv] gi|148659760|ref|YP_001281283.1| recombination protein F [Mycobacterium tuberculosis H37Ra] gi|167969466|ref|ZP_02551743.1| recombination protein F [Mycobacterium tuberculosis H37Ra] gi|306778291|ref|ZP_07416628.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu001] gi|306974410|ref|ZP_07487071.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu010] gi|307082118|ref|ZP_07491288.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu011] gi|307086729|ref|ZP_07495842.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu012] gi|2842621|sp|Q59586|RECF_MYCTU RecName: Full=DNA replication and repair protein recF gi|166220718|sp|A5TY71|RECF_MYCTA RecName: Full=DNA replication and repair protein recF gi|1552556|emb|CAB02424.1| DNA REPLICATION AND REPAIR PROTEIN RECF (SINGLE-STRAND DNA BINDING PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|148503912|gb|ABQ71721.1| DNA replication and repair protein RecF [Mycobacterium tuberculosis H37Ra] gi|308213441|gb|EFO72840.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu001] gi|308356305|gb|EFP45156.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu010] gi|308360192|gb|EFP49043.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu011] gi|308363879|gb|EFP52730.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu012] Length = 385 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 30/363 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A + L T+FVG NG GKTN++EA+ + + R ++ + R Sbjct: 3 VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+ + ST +G E D+ I V ++N +R ++ LR Sbjct: 63 VGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G +RRR+LD + P ++ER++R R LL Sbjct: 118 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G FD+ ++++AE G ++ AR++++N L+ + + Q P + + G+ Sbjct: 178 GVFDT--LEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLA-PESRSASIGYRASM 234 Query: 232 -LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHG 287 + G +QS + + D+ R L+GPHR DLI+ D+ Sbjct: 235 DVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFA 293 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q+ + Sbjct: 294 SHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLV 351 Query: 348 TGT 350 T Sbjct: 352 TAA 354 >gi|319954276|ref|YP_004165543.1| DNA replication and repair protein recf [Cellulophaga algicola DSM 14237] gi|319422936|gb|ADV50045.1| DNA replication and repair protein recF [Cellulophaga algicola DSM 14237] Length = 361 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 96/357 (26%), Positives = 163/357 (45%), Gaps = 34/357 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N++S FD++ FVG NG+GKTNIL+AI LS G+ + + Sbjct: 3 LKKLSLINYKNFSSENFDFDSKINCFVGQNGIGKTNILDAIYHLSFGKSYFNPIATQNIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121 G FF E ++ R+++ V L+ I + D+L+ H+ Sbjct: 63 HGE-DFFVIEGNFEKLD-----------REEKIVCSLKKGMKKIIKKNGKAYDKLSDHIG 110 Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----T 174 LV PS + + S RR+F+D ++ D + + ++ + +++ RN LL Sbjct: 111 FLPLVIISPSDRDLITEGSDTRRKFIDGVISQSDKDYLQTLLKYNKILSQRNSLLKYFAV 170 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 FD + S Q+ G I RV + + E Q + + ++SL D Sbjct: 171 NHTFDKTNLSVYNEQLTTYGTVIFNKRVAFLETFIPIFKEQYQVISGGNEEVSLI--YDS 228 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 K ++ L E K + + D + T +G H+ DL D + I GS G+QK Sbjct: 229 KILET--NLLELLEKNI----EKDRAIQYTSVGIHKDDLNFDLGEHPIK-KFGSQGQQKS 281 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGT 350 L+ + LA I + PILLLD+I LDE++ + + +V D Q+F++ T Sbjct: 282 FLIALKLAQFHFIKEQSSTTPILLLDDIFDKLDENRVSHIISLVNDENFGQLFISDT 338 >gi|325105363|ref|YP_004275017.1| DNA replication and repair protein RecF [Pedobacter saltans DSM 12145] gi|324974211|gb|ADY53195.1| DNA replication and repair protein RecF [Pedobacter saltans DSM 12145] Length = 368 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 99/387 (25%), Positives = 166/387 (42%), Gaps = 47/387 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ F+NY L F F GDNG GKTN+L+AI +L+ + + D + Sbjct: 3 LKNLSLINFKNYDEAELSFSEGANAFSGDNGAGKTNLLDAIHYLALCKSYFNP--IDSQQ 60 Query: 67 IGSPSFFSTFARV--EGMEGLADISIKLETRDD--RSVRCLQINDVVIRVVDELNKHLRI 122 I F V + E + +K + R+ + Q R+ D + + Sbjct: 61 IKQEQDFFMIQGVFDKNTEEIVACGVKRNQKKQFKRNKKEYQ------RLADHIGLFPLV 114 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYF 178 + I G S ERR+F+D ++ DP++ +I + + + RN LL G + Sbjct: 115 MISPNDVSLILDG-SEERRKFIDNVISQTDPKYLDELIIYNKNLLNRNSLLKNIAETGKY 173 Query: 179 DSSWCSSIEAQMAELGVKINIAR-------VEMINALSSLIMEYVQKENFPHIKLSLTGF 231 D ++ Q+ G I R V + N S + + +K + +G Sbjct: 174 DPYLLEILDEQLVNSGRIIFEKRAAFMERFVPIFNQHYSYLTDDAEKVELIYDSPLQSG- 232 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 F L ++ +K D + +RT G H+ +LI + + GS G+ Sbjct: 233 -------DFQELLQKSIEK-------DRILQRTTTGIHKDELIFSVHEMPLK-KFGSQGQ 277 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTG 349 QK L+ + LA + GF P+LLLD+I LD+ + L ++V+ D G QIF+T Sbjct: 278 QKSFLIALKLAKYSFLYQEKGFKPLLLLDDIFDKLDDKRITKLMKMVSEDDFG-QIFITD 336 Query: 350 TD----KSVFDSLNETAKFMRISNHQA 372 T+ K VF+ ++ I+N Q Sbjct: 337 TNPERLKRVFNDISVALNLFHINNQQV 363 >gi|262377661|ref|ZP_06070881.1| recombinational DNA repair ATPase [Acinetobacter lwoffii SH145] gi|262307420|gb|EEY88563.1| recombinational DNA repair ATPase [Acinetobacter lwoffii SH145] Length = 359 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 86/355 (24%), Positives = 162/355 (45%), Gaps = 33/355 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+I RN ++ L +F G NG GKT+ILEAI L+ GR FR + Sbjct: 1 MHITRLHIERVRNLKTVALHGLQPFNVFYGQNGSGKTSILEAIHLLAAGRSFRTHIPKNY 60 Query: 65 TRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + G+ F + GM+ +A + +++N ++ +L K L Sbjct: 61 IQHGAQDAIVFAQSATEKIGMQKMAS-----------GEQLIKVNGDLVATQGQLAKLLP 109 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + + P I + RR+ LD ++F ++P + R ++ RN LL F S Sbjct: 110 LQLIDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYHAWQYYSRALKQRNSLLKSKRFLS- 168 Query: 182 WCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 S +E ++E G ++ RV ++ + + K+ P +++SL ++ Sbjct: 169 -LSDVEPWNQMLSEYGEILHSQRVGIVEQWKPFFEDDL-KQLLPELQVSL------EYSP 220 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVL 296 F + + L + + D R T GPHR+D L D + + S G++K+++ Sbjct: 221 GFHS-ETGLLNDLTNQHEKDCERRYTEYGPHRADLRLKTPMGDADVIL---SRGQKKLLM 276 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + L+ ++ ++ ++LLD+++A LD + L ++ +GSQ+F+T D Sbjct: 277 IALKLSQIAML-HSCNKETVVLLDDVTAELDLTAQQRLIERLSQLGSQVFITTLD 330 >gi|203284347|ref|YP_002222087.1| DNA replication and repair protein RecF [Borrelia duttonii Ly] gi|201083790|gb|ACH93381.1| DNA replication and repair protein RecF [Borrelia duttonii Ly] Length = 355 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 91/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI+F N F+N + + FD + F G+NG GKTNIL+AI L+ F + ++ Sbjct: 4 KIEFFN---FKNIENQVINFDFDNIYFCGENGSGKTNILDAIYCLAFASSFLVNTDKELI 60 Query: 66 RIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F+ F + + G I L R+D+ +++N+ ++R D + L I Sbjct: 61 TYGEREFYLKCFYQTKEKNG----EINLSVRNDKKE--IKVNNSIVR--DRRDLILNIPA 112 Query: 125 LVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 ++ S I G M+RR F D+ + I + + + ++++ RN +L + D Sbjct: 113 IIFSNHDIDFIIGTPMKRRWFFDQAMSFISLSYLDSLRKYRKILKQRNLILKQR--DKDL 170 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-C 241 + ++I R + Y + ++ L+ K+ S C Sbjct: 171 LKIYNETFVDCALEITEMRKNFVEHFCRFFQYYCS------LIFDVSCNLEIKYFPSVTC 224 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 K+E+ + L K + S TLIGPHR DL + + H STG+ +V+ + L Sbjct: 225 CSKDEFFEILCLREKDELYSETTLIGPHR-DLYEILSEHRVFTDHASTGQIRVLALIYRL 283 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + ++ +PILL D++ LD KR +F I+ SQ F T D Sbjct: 284 VQVIIFNDKFNMSPILLFDDVFLELDSIKRKKVFEILPK-DSQCFFTFLD 332 >gi|225016756|ref|ZP_03705948.1| hypothetical protein CLOSTMETH_00668 [Clostridium methylpentosum DSM 5476] gi|224950424|gb|EEG31633.1| hypothetical protein CLOSTMETH_00668 [Clostridium methylpentosum DSM 5476] Length = 376 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 95/358 (26%), Positives = 158/358 (44%), Gaps = 20/358 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI FRN + L D + G N GKTN++EAI S + FR D Sbjct: 1 MKITEFKAHNFRNLQDIVLTPDPGINLIYGQNAQGKTNLIEAIWLFSGEKSFR--GNKDS 58 Query: 65 TRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 I F+T + + E I+L ++ + +N V + + L + Sbjct: 59 RMIWFEEQFATLSLSFDDGEREQHAQIRLGEKNSCT-----LNRVEQKSLSALAGAFQCV 113 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P+ + G RR+FLD + I P + + +ER++ RN LL E S Sbjct: 114 VFSPTHLAVVQGGPSLRRKFLDSAICQIRPDYHGYLGQYERVLAQRNSLLKEIARYSYLR 173 Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKF 236 +IE Q+A+LG + I R + + + + +L L T F D Sbjct: 174 DTIEVWDRQLAKLGTIVTILRQDYVCKVEKFAKHSYAGISSDREQLGLSYQSTAF-DSLL 232 Query: 237 DQSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 D ++ K + Y +L + D T IG HR DL + A+ +GS G+Q+ Sbjct: 233 DHAYTQDKVDCYFSRLEESLDQDIRQGFTGIGVHRDDLELLINGLAVK-TYGSQGQQRST 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 ++ + LA ARL+ + TG P++LLD++ + LD +++ L + + +Q+F+T D S Sbjct: 292 ILALKLAEARLLKSITGNHPVILLDDVMSELDISRQDYLLNHIRE--NQVFITCCDSS 347 >gi|21675093|ref|NP_663158.1| recombination/replication protein RecF [Chlorobium tepidum TLS] gi|81790424|sp|Q8KA81|RECF_CHLTE RecName: Full=DNA replication and repair protein recF gi|21648334|gb|AAM73500.1| recombination/replication protein RecF [Chlorobium tepidum TLS] Length = 368 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 91/360 (25%), Positives = 168/360 (46%), Gaps = 24/360 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ ++I+ FRN+ L F+ H+I G NG GKT+ILEAI + + RGF + Sbjct: 1 MRLDSISIANFRNHTLLE--FEPGHSITNIYGRNGSGKTSILEAIHYCALTRGFSGNNDR 58 Query: 63 DVTRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + + G F S+F +G+ +SI + R R L +N+ ++ + Sbjct: 59 EYLKFGEELFTIRSSFTSGQGI--ATKVSITYSPK--REKRIL-VNEQELQTFSSHIGTI 113 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 P I +G ERRRF+D + D ++ ++ + R+++ RN LL+ Sbjct: 114 PCVTFTPREMVIINGAPAERRRFIDTAICQYDRKYLSDLLLYRRILQQRNALLSSEQDPR 173 Query: 181 SWCSSIEA---QMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKL-SLTGFLD 233 S+++ Q+ + +I + R I +S+ + +++ + P I S G + Sbjct: 174 VIDSALDVLTDQLVAIATEIVLVRKRFIEHFTSMLGGVYQWIPEGAEPSILYQSSLGHHE 233 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +++ ++ ++ F+ K + RR TL GPHR DL Y +K + S G+Q Sbjct: 234 NLYEKDKI---QQVFRERFETLKQQELQRRQTLAGPHRDDLQF-YLNKREIRKYASQGQQ 289 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + LV + + + +G PI LLD++ + LDE + + G Q+ +T T+K Sbjct: 290 RAFLVAMKMTLQGYLYEASGEIPITLLDDLFSELDEVVSGTMVETLATKG-QVIITSTEK 348 >gi|84497191|ref|ZP_00996013.1| recombination protein F [Janibacter sp. HTCC2649] gi|84382079|gb|EAP97961.1| recombination protein F [Janibacter sp. HTCC2649] Length = 398 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 102/381 (26%), Positives = 165/381 (43%), Gaps = 51/381 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y S L + T FVG NG GKTN++EAI +L+ R A+ A + R Sbjct: 3 VRHLTVGDFRSYPSAELPLEPGITTFVGLNGQGKTNLVEAIGYLASLSSHRVANDAPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ A V +G E L ++LE R+ R + R D L + +R Sbjct: 63 FGAAQAIIRGAVVRDGRETL----VELEITPGRANRARLNKSPLTRTRDVLGQ-VRTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----------------RGR 169 P + G ERRRFLD ++ A PR D++R++ RG+ Sbjct: 118 APEDLSLVKGDPSERRRFLDDLLVARQPRWAGARGDYDRILKQRNALLKSAAPVLRGRGK 177 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 R EG D+ S EA + L V A++ + A + ++ P + + Sbjct: 178 QRRPVEG-VDT--VSEREAALHTLDVWN--AQLAQVAAPLLYARLRLLRDLAPLLGKAYD 232 Query: 230 GFLDGKFDQSF---CALKEEYAKKLFDG-------------------RKMDSMSRRTLIG 267 G+ D +L+EE+A ++ G R + TL+G Sbjct: 233 EVSAGQSDARVSYKASLREEFAGRIAAGEVPELEELHAELLASFAEVRGQEIERGVTLVG 292 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 PHR D+++ + + S GE +G+ LA L+ + G P+L+LD++ A LD Sbjct: 293 PHRDDVVLTLGELPAK-GYASHGESWSFALGLKLAAYHLLRHDLGDDPVLILDDVFAELD 351 Query: 328 EDKRNALFRIVTDIGSQIFMT 348 +R L +V D Q+ +T Sbjct: 352 AGRRERLAAMVADC-EQVLIT 371 >gi|31791180|ref|NP_853673.1| recombination protein F [Mycobacterium bovis AF2122/97] gi|121635886|ref|YP_976109.1| recombination protein F [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635913|ref|YP_976136.1| recombination protein F [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988386|ref|YP_002643053.1| DNA replication and repair protein [Mycobacterium bovis BCG str. Tokyo 172] gi|51316336|sp|Q7U314|RECF_MYCBO RecName: Full=DNA replication and repair protein recF gi|254790483|sp|C1AJ00|RECF_MYCBT RecName: Full=DNA replication and repair protein recF gi|31616765|emb|CAD92865.1| DNA REPLICATION AND REPAIR PROTEIN RECF (SINGLE-STRAND DNA BINDING PROTEIN) [Mycobacterium bovis AF2122/97] gi|121491533|emb|CAL69987.1| dna replication and repair protein recF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491560|emb|CAL70017.1| Dna replication and repair protein recF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771499|dbj|BAH24305.1| DNA replication and repair protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 385 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 30/363 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A + L T+FVG NG GKTN++EA+ + + R ++ + R Sbjct: 3 VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+ + ST +G E D+ I V ++N +R ++ LR Sbjct: 63 VGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G +RRR+LD + P ++ER++R R LL Sbjct: 118 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVVRQRTALLKSVPGARYRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G FD+ ++++AE G ++ AR++++N L+ + + Q P + + G+ Sbjct: 178 GVFDT--LEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLA-PESRSASIGYRASM 234 Query: 232 -LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHG 287 + G +QS + + D+ R L+GPHR DLI+ D+ Sbjct: 235 DVTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFA 293 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q+ + Sbjct: 294 SHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLV 351 Query: 348 TGT 350 T Sbjct: 352 TAA 354 >gi|310825639|ref|YP_003957996.1| DNA replication and repair protein RecF [Eubacterium limosum KIST612] gi|308737373|gb|ADO35033.1| DNA replication and repair protein RecF [Eubacterium limosum KIST612] Length = 371 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 87/371 (23%), Positives = 169/371 (45%), Gaps = 17/371 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +RNY L F + G N GKTN++E+I LS G + + D+ Sbjct: 6 LHLVHYRNYRDETLEFSPGINVICGQNAQGKTNLVESIHLLSRGYSHKTGTLMDMVGFDE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 FF A + + +SIK++ + + + +N D + L P Sbjct: 66 SGFFVQ-ADIVKEDTSHTLSIKMQDKK----KTVLLNGKKETRRDAVLGVLTTILFEPDD 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA- 188 +I +RRRF++ + P + + ++ ++ RN LL E +DS+ ++++ Sbjct: 121 LKIVKEGPEKRRRFMNNEISGFKPNYPYILKNYAKIHNQRNALLKEIKYDSTLALTLDSW 180 Query: 189 --QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQSFCAL 243 Q+ + G + R++ + L+ E ++ + +L L L+ Q F L Sbjct: 181 DEQLVKYGSMLMRYRIDYLRRLNVKARELHRELSGGQEELVLFYQNNVLENP--QEFSDL 238 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + +KL R+ D T GPH D+++ K +GS G+Q+ + + L+ Sbjct: 239 ERIFREKLQASRQEDIARGSTTYGPHVDDIMIHLNGKDAK-KYGSQGQQRTAAISLKLSQ 297 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE-TA 362 + +TG P++LLD+I + LD+ ++ + I+ +Q F+T TD S + +E + Sbjct: 298 IEIYRESTGDYPVVLLDDILSELDDRRQRNILSILGK--TQAFITCTDPSFIEHYSELPS 355 Query: 363 KFMRISNHQAL 373 K ++I + + L Sbjct: 356 KILKIEDGRQL 366 >gi|218551230|ref|YP_002385022.1| recombination protein F [Escherichia fergusonii ATCC 35469] gi|226737798|sp|B7LK42|RECF_ESCF3 RecName: Full=DNA replication and repair protein recF gi|218358772|emb|CAQ91429.1| gap repair protein [Escherichia fergusonii ATCC 35469] gi|323965761|gb|EGB61212.1| DNA replication and repair protein RecF [Escherichia coli M863] gi|323975233|gb|EGB70337.1| DNA replication and repair protein RecF [Escherichia coli TW10509] gi|324111597|gb|EGC05578.1| DNA replication and repair protein RecF [Escherichia fergusonii B253] gi|327250843|gb|EGE62545.1| DNA replication and repair protein recF [Escherichia coli STEC_7v] Length = 357 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFI-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|315022216|gb|EFT35244.1| DNA replication and repair protein recF [Riemerella anatipestifer RA-YM] gi|325336656|gb|ADZ12930.1| Recombinational DNA repair ATPase (RecF pathway) [Riemerella anatipestifer RA-GD] Length = 380 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 102/374 (27%), Positives = 171/374 (45%), Gaps = 28/374 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L ++ F+N+ F ++ FVG+NGVGKTNIL+A+ +LS G+ F S DV Sbjct: 23 IKKLYLTNFKNHQERVFDFSSEINSFVGNNGVGKTNILDALHYLSVGKSFLGNS--DVNN 80 Query: 67 I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDELNKHLRISW 124 I FF+ A V+ E + I ++++D + + ++ ND R+ D + L Sbjct: 81 ILTGEDFFTLEAVVDDGEKETILKI-IQSKDAK--KLVKKNDKSYARLSDHIG-FLPSVM 136 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180 + P + S RRRFLD M+ +D + ++ +++ ++ RN LL YFD Sbjct: 137 ISPYDANLISDSGESRRRFLDAMISQVDAEYLHSIMQYQKALKQRNALLKSFAKNRYFDK 196 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + + I R I L + + + ++ + D Sbjct: 197 DSLEIYDEPLCQYAGVIFEKRSLFITQLLPTFLHFYNMISNGKEEVDIVYQSD------- 249 Query: 241 CALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L+E+ A+ L + D + T G H+ +L + I GS G+QK L+ + Sbjct: 250 --LEEQTMAEVLSQNVEKDRVLTYTSKGIHKDELRFEMSGDLIK-KIGSQGQQKSFLIAL 306 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK----SV 354 LA I TG P+LLLD+I LD+ + L +V + QIF+T T K +V Sbjct: 307 KLAQINRIKEITGKTPLLLLDDIFDKLDDRRVAQLIELVNKEHFGQIFITDTHKERTEAV 366 Query: 355 FDSLNETAKFMRIS 368 ++NE ++ I+ Sbjct: 367 VKNINEESRIFEIT 380 >gi|15804294|ref|NP_290333.1| recombination protein F [Escherichia coli O157:H7 EDL933] gi|15833889|ref|NP_312662.1| recombination protein F [Escherichia coli O157:H7 str. Sakai] gi|16131568|ref|NP_418155.1| gap repair protein [Escherichia coli str. K-12 substr. MG1655] gi|26250441|ref|NP_756481.1| recombination protein F [Escherichia coli CFT073] gi|74314014|ref|YP_312433.1| recombination protein F [Shigella sonnei Ss046] gi|89110313|ref|AP_004093.1| gap repair protein [Escherichia coli str. K-12 substr. W3110] gi|91213222|ref|YP_543208.1| recombination protein F [Escherichia coli UTI89] gi|117625976|ref|YP_859299.1| recombination protein F [Escherichia coli APEC O1] gi|157155989|ref|YP_001465185.1| recombination protein F [Escherichia coli E24377A] gi|157163180|ref|YP_001460498.1| recombination protein F [Escherichia coli HS] gi|168748584|ref|ZP_02773606.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4113] gi|168753589|ref|ZP_02778596.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4401] gi|168759886|ref|ZP_02784893.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4501] gi|168766187|ref|ZP_02791194.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4486] gi|168772265|ref|ZP_02797272.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4196] gi|168779922|ref|ZP_02804929.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4076] gi|168798735|ref|ZP_02823742.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC508] gi|170018064|ref|YP_001723018.1| recombination protein F [Escherichia coli ATCC 8739] gi|170083202|ref|YP_001732522.1| gap repair protein [Escherichia coli str. K-12 substr. DH10B] gi|170684195|ref|YP_001746028.1| recombination protein F [Escherichia coli SMS-3-5] gi|191165795|ref|ZP_03027633.1| DNA replication and repair protein RecF [Escherichia coli B7A] gi|193069194|ref|ZP_03050151.1| DNA replication and repair protein RecF [Escherichia coli E110019] gi|194435781|ref|ZP_03067884.1| DNA replication and repair protein RecF [Escherichia coli 101-1] gi|195936321|ref|ZP_03081703.1| recombination protein F [Escherichia coli O157:H7 str. EC4024] gi|208808901|ref|ZP_03251238.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4206] gi|208814025|ref|ZP_03255354.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4045] gi|208819308|ref|ZP_03259628.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4042] gi|209397495|ref|YP_002273226.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4115] gi|215489040|ref|YP_002331471.1| recombination protein F [Escherichia coli O127:H6 str. E2348/69] gi|217324896|ref|ZP_03440980.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. TW14588] gi|218556265|ref|YP_002389179.1| recombination protein F [Escherichia coli IAI1] gi|218560775|ref|YP_002393688.1| recombination protein F [Escherichia coli S88] gi|218691988|ref|YP_002400200.1| recombination protein F [Escherichia coli ED1a] gi|218697422|ref|YP_002405089.1| recombination protein F [Escherichia coli 55989] gi|218707346|ref|YP_002414865.1| recombination protein F [Escherichia coli UMN026] gi|227883921|ref|ZP_04001726.1| recombination protein F [Escherichia coli 83972] gi|237703500|ref|ZP_04533981.1| recombination protein F [Escherichia sp. 3_2_53FAA] gi|238902790|ref|YP_002928586.1| gap repair protein [Escherichia coli BW2952] gi|253771438|ref|YP_003034269.1| recombination protein F [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038917|ref|ZP_04872969.1| ssDNA and dsDNA binding protein [Escherichia sp. 1_1_43] gi|254163651|ref|YP_003046759.1| recombination protein F [Escherichia coli B str. REL606] gi|254795703|ref|YP_003080540.1| recombination protein F [Escherichia coli O157:H7 str. TW14359] gi|256025569|ref|ZP_05439434.1| recombination protein F [Escherichia sp. 4_1_40B] gi|260857889|ref|YP_003231780.1| gap repair protein RecF [Escherichia coli O26:H11 str. 11368] gi|260870431|ref|YP_003236833.1| gap repair protein RecF [Escherichia coli O111:H- str. 11128] gi|261225853|ref|ZP_05940134.1| gap repair protein [Escherichia coli O157:H7 str. FRIK2000] gi|261258898|ref|ZP_05951431.1| gap repair protein RecF [Escherichia coli O157:H7 str. FRIK966] gi|291285119|ref|YP_003501937.1| DNA replication and repair protein recF [Escherichia coli O55:H7 str. CB9615] gi|293407340|ref|ZP_06651262.1| DNA replication and repair protein recF [Escherichia coli FVEC1412] gi|293413154|ref|ZP_06655820.1| conserved hypothetical protein [Escherichia coli B354] gi|293417173|ref|ZP_06659800.1| DNA replication and repair protein recF [Escherichia coli B185] gi|293464024|ref|ZP_06664438.1| DNA replication and repair protein recF [Escherichia coli B088] gi|297518855|ref|ZP_06937241.1| recombination protein F [Escherichia coli OP50] gi|298383081|ref|ZP_06992676.1| DNA replication and repair protein recF [Escherichia coli FVEC1302] gi|300815053|ref|ZP_07095278.1| recombination protein F [Escherichia coli MS 107-1] gi|300824315|ref|ZP_07104431.1| recombination protein F [Escherichia coli MS 119-7] gi|300896029|ref|ZP_07114590.1| recombination protein F [Escherichia coli MS 198-1] gi|300903025|ref|ZP_07120967.1| recombination protein F [Escherichia coli MS 84-1] gi|300917470|ref|ZP_07134130.1| recombination protein F [Escherichia coli MS 115-1] gi|300925524|ref|ZP_07141399.1| recombination protein F [Escherichia coli MS 182-1] gi|300932331|ref|ZP_07147599.1| recombination protein F [Escherichia coli MS 187-1] gi|300940885|ref|ZP_07155412.1| recombination protein F [Escherichia coli MS 21-1] gi|300947539|ref|ZP_07161716.1| recombination protein F [Escherichia coli MS 116-1] gi|300956294|ref|ZP_07168596.1| recombination protein F [Escherichia coli MS 175-1] gi|300984542|ref|ZP_07177032.1| recombination protein F [Escherichia coli MS 45-1] gi|301020911|ref|ZP_07184966.1| recombination protein F [Escherichia coli MS 69-1] gi|301028493|ref|ZP_07191733.1| recombination protein F [Escherichia coli MS 196-1] gi|301047518|ref|ZP_07194594.1| recombination protein F [Escherichia coli MS 185-1] gi|301305954|ref|ZP_07212036.1| recombination protein F [Escherichia coli MS 124-1] gi|301325008|ref|ZP_07218558.1| recombination protein F [Escherichia coli MS 78-1] gi|306815947|ref|ZP_07450085.1| recombination protein F [Escherichia coli NC101] gi|307140400|ref|ZP_07499756.1| recombination protein F [Escherichia coli H736] gi|307313231|ref|ZP_07592856.1| DNA replication and repair protein RecF [Escherichia coli W] gi|312972008|ref|ZP_07786182.1| DNA replication and repair protein recF [Escherichia coli 1827-70] gi|331644424|ref|ZP_08345553.1| DNA replication and repair protein RecF [Escherichia coli H736] gi|331649526|ref|ZP_08350612.1| DNA replication and repair protein RecF [Escherichia coli M605] gi|331655360|ref|ZP_08356359.1| DNA replication and repair protein RecF [Escherichia coli M718] gi|331660042|ref|ZP_08360980.1| DNA replication and repair protein RecF [Escherichia coli TA206] gi|331665350|ref|ZP_08366251.1| DNA replication and repair protein RecF [Escherichia coli TA143] gi|331675190|ref|ZP_08375943.1| DNA replication and repair protein RecF [Escherichia coli TA280] gi|331679798|ref|ZP_08380468.1| DNA replication and repair protein RecF [Escherichia coli H591] gi|331685424|ref|ZP_08386010.1| DNA replication and repair protein RecF [Escherichia coli H299] gi|67471979|sp|P0A7H0|RECF_ECOLI RecName: Full=DNA replication and repair protein recF gi|67471980|sp|P0A7H1|RECF_ECOL6 RecName: Full=DNA replication and repair protein recF gi|67471981|sp|P0A7H2|RECF_ECO57 RecName: Full=DNA replication and repair protein recF gi|97180964|sp|Q3YWB4|RECF_SHISS RecName: Full=DNA replication and repair protein recF gi|122421840|sp|Q1R4N7|RECF_ECOUT RecName: Full=DNA replication and repair protein recF gi|166220709|sp|A1AHN5|RECF_ECOK1 RecName: Full=DNA replication and repair protein recF gi|166918721|sp|A7ZTQ6|RECF_ECO24 RecName: Full=DNA replication and repair protein recF gi|166918722|sp|A8A6G1|RECF_ECOHS RecName: Full=DNA replication and repair protein recF gi|189039623|sp|B1IYP4|RECF_ECOLC RecName: Full=DNA replication and repair protein recF gi|226737789|sp|B7MGC1|RECF_ECO45 RecName: Full=DNA replication and repair protein recF gi|226737790|sp|B5YXA2|RECF_ECO5E RecName: Full=DNA replication and repair protein recF gi|226737792|sp|B7M4I9|RECF_ECO8A RecName: Full=DNA replication and repair protein recF gi|226737793|sp|B1X9S9|RECF_ECODH RecName: Full=DNA replication and repair protein recF gi|226737794|sp|B7NF17|RECF_ECOLU RecName: Full=DNA replication and repair protein recF gi|226737796|sp|B1LL25|RECF_ECOSM RecName: Full=DNA replication and repair protein recF gi|254790475|sp|B7UMG7|RECF_ECO27 RecName: Full=DNA replication and repair protein recF gi|254790476|sp|B7L842|RECF_ECO55 RecName: Full=DNA replication and repair protein recF gi|254790477|sp|B7N204|RECF_ECO81 RecName: Full=DNA replication and repair protein recF gi|259563362|sp|C4ZYX7|RECF_ECOBW RecName: Full=DNA replication and repair protein recF gi|12518539|gb|AAG58897.1|AE005601_3 ssDNA and dsDNA binding, ATP binding [Escherichia coli O157:H7 str. EDL933] gi|26110871|gb|AAN83055.1|AE016769_170 DNA replication and repair protein recF [Escherichia coli CFT073] gi|41645|emb|CAA27870.1| unnamed protein product [Escherichia coli K-12] gi|147539|gb|AAA24511.1| RecF [Escherichia coli] gi|1790135|gb|AAC76723.1| gap repair protein [Escherichia coli str. K-12 substr. MG1655] gi|13364110|dbj|BAB38058.1| DNA repair and genetic recombination protein RecF [Escherichia coli O157:H7 str. Sakai] gi|73857491|gb|AAZ90198.1| ssDNA and dsDNA binding protein [Shigella sonnei Ss046] gi|85676344|dbj|BAE77594.1| gap repair protein [Escherichia coli str. K12 substr. W3110] gi|91074796|gb|ABE09677.1| ssDNA and dsDNA binding, ATP binding [Escherichia coli UTI89] gi|115515100|gb|ABJ03175.1| recombination protein F [Escherichia coli APEC O1] gi|157068860|gb|ABV08115.1| DNA replication and repair protein RecF [Escherichia coli HS] gi|157078019|gb|ABV17727.1| DNA replication and repair protein RecF [Escherichia coli E24377A] gi|169752992|gb|ACA75691.1| DNA replication and repair protein RecF [Escherichia coli ATCC 8739] gi|169891037|gb|ACB04744.1| gap repair protein [Escherichia coli str. K-12 substr. DH10B] gi|170521913|gb|ACB20091.1| DNA replication and repair protein RecF [Escherichia coli SMS-3-5] gi|187771421|gb|EDU35265.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4196] gi|188016945|gb|EDU55067.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4113] gi|189002585|gb|EDU71571.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4076] gi|189358910|gb|EDU77329.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4401] gi|189364573|gb|EDU82992.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4486] gi|189369691|gb|EDU88107.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4501] gi|189378816|gb|EDU97232.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC508] gi|190904119|gb|EDV63830.1| DNA replication and repair protein RecF [Escherichia coli B7A] gi|192957518|gb|EDV87964.1| DNA replication and repair protein RecF [Escherichia coli E110019] gi|194425324|gb|EDX41308.1| DNA replication and repair protein RecF [Escherichia coli 101-1] gi|208728702|gb|EDZ78303.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4206] gi|208735302|gb|EDZ83989.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4045] gi|208739431|gb|EDZ87113.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4042] gi|209158895|gb|ACI36328.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4115] gi|209754128|gb|ACI75371.1| DNA polymerase III beta-subunit [Escherichia coli] gi|209754130|gb|ACI75372.1| DNA polymerase III beta-subunit [Escherichia coli] gi|209754132|gb|ACI75373.1| DNA polymerase III beta-subunit [Escherichia coli] gi|209754134|gb|ACI75374.1| DNA polymerase III beta-subunit [Escherichia coli] gi|209754136|gb|ACI75375.1| DNA polymerase III beta-subunit [Escherichia coli] gi|215267112|emb|CAS11559.1| gap repair protein [Escherichia coli O127:H6 str. E2348/69] gi|217321117|gb|EEC29541.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. TW14588] gi|218354154|emb|CAV00754.1| gap repair protein [Escherichia coli 55989] gi|218363034|emb|CAR00673.1| gap repair protein [Escherichia coli IAI1] gi|218367544|emb|CAR05329.1| gap repair protein [Escherichia coli S88] gi|218429552|emb|CAR10375.1| gap repair protein [Escherichia coli ED1a] gi|218434443|emb|CAR15371.1| gap repair protein [Escherichia coli UMN026] gi|222035414|emb|CAP78159.1| DNA replication and repair protein recF [Escherichia coli LF82] gi|226838882|gb|EEH70909.1| ssDNA and dsDNA binding protein [Escherichia sp. 1_1_43] gi|226902764|gb|EEH89023.1| recombination protein F [Escherichia sp. 3_2_53FAA] gi|227839199|gb|EEJ49665.1| recombination protein F [Escherichia coli 83972] gi|238861285|gb|ACR63283.1| gap repair protein [Escherichia coli BW2952] gi|242379239|emb|CAQ34044.1| ssDNA and dsDNA binding, ATP binding, subunit of RecFOR complex [Escherichia coli BL21(DE3)] gi|253322482|gb|ACT27084.1| DNA replication and repair protein RecF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975552|gb|ACT41223.1| recombination protein F [Escherichia coli B str. REL606] gi|253979708|gb|ACT45378.1| recombination protein F [Escherichia coli BL21(DE3)] gi|254595103|gb|ACT74464.1| gap repair protein [Escherichia coli O157:H7 str. TW14359] gi|257756538|dbj|BAI28040.1| gap repair protein RecF [Escherichia coli O26:H11 str. 11368] gi|257766787|dbj|BAI38282.1| gap repair protein RecF [Escherichia coli O111:H- str. 11128] gi|260447282|gb|ACX37704.1| DNA replication and repair protein RecF [Escherichia coli DH1] gi|281180754|dbj|BAI57084.1| DNA replication and repair protein RecF [Escherichia coli SE15] gi|284923783|emb|CBG36881.1| DNA replication and repair protein [Escherichia coli 042] gi|290764992|gb|ADD58953.1| DNA replication and repair protein recF [Escherichia coli O55:H7 str. CB9615] gi|291321656|gb|EFE61092.1| DNA replication and repair protein recF [Escherichia coli B088] gi|291425631|gb|EFE98667.1| DNA replication and repair protein recF [Escherichia coli FVEC1412] gi|291431204|gb|EFF04197.1| DNA replication and repair protein recF [Escherichia coli B185] gi|291468287|gb|EFF10782.1| conserved hypothetical protein [Escherichia coli B354] gi|294492502|gb|ADE91258.1| DNA replication and repair protein RecF [Escherichia coli IHE3034] gi|298276917|gb|EFI18435.1| DNA replication and repair protein recF [Escherichia coli FVEC1302] gi|299878455|gb|EFI86666.1| recombination protein F [Escherichia coli MS 196-1] gi|300300578|gb|EFJ56963.1| recombination protein F [Escherichia coli MS 185-1] gi|300316881|gb|EFJ66665.1| recombination protein F [Escherichia coli MS 175-1] gi|300360089|gb|EFJ75959.1| recombination protein F [Escherichia coli MS 198-1] gi|300398378|gb|EFJ81916.1| recombination protein F [Escherichia coli MS 69-1] gi|300404931|gb|EFJ88469.1| recombination protein F [Escherichia coli MS 84-1] gi|300408375|gb|EFJ91913.1| recombination protein F [Escherichia coli MS 45-1] gi|300415274|gb|EFJ98584.1| recombination protein F [Escherichia coli MS 115-1] gi|300418364|gb|EFK01675.1| recombination protein F [Escherichia coli MS 182-1] gi|300452876|gb|EFK16496.1| recombination protein F [Escherichia coli MS 116-1] gi|300454366|gb|EFK17859.1| recombination protein F [Escherichia coli MS 21-1] gi|300459917|gb|EFK23410.1| recombination protein F [Escherichia coli MS 187-1] gi|300523202|gb|EFK44271.1| recombination protein F [Escherichia coli MS 119-7] gi|300531945|gb|EFK53007.1| recombination protein F [Escherichia coli MS 107-1] gi|300838805|gb|EFK66565.1| recombination protein F [Escherichia coli MS 124-1] gi|300848102|gb|EFK75862.1| recombination protein F [Escherichia coli MS 78-1] gi|305850343|gb|EFM50800.1| recombination protein F [Escherichia coli NC101] gi|306906914|gb|EFN37423.1| DNA replication and repair protein RecF [Escherichia coli W] gi|307555840|gb|ADN48615.1| DNA replication and repair protein RecF [Escherichia coli ABU 83972] gi|307628776|gb|ADN73080.1| recombination protein F [Escherichia coli UM146] gi|309704147|emb|CBJ03494.1| DNA replication and repair protein [Escherichia coli ETEC H10407] gi|310334385|gb|EFQ00590.1| DNA replication and repair protein recF [Escherichia coli 1827-70] gi|312948267|gb|ADR29094.1| recombination protein F [Escherichia coli O83:H1 str. NRG 857C] gi|315063006|gb|ADT77333.1| gap repair protein [Escherichia coli W] gi|315138284|dbj|BAJ45443.1| DNA replication and repair protein recF [Escherichia coli DH1] gi|315254613|gb|EFU34581.1| recombination protein F [Escherichia coli MS 85-1] gi|315285495|gb|EFU44940.1| recombination protein F [Escherichia coli MS 110-3] gi|315292858|gb|EFU52210.1| recombination protein F [Escherichia coli MS 153-1] gi|315296898|gb|EFU56186.1| recombination protein F [Escherichia coli MS 16-3] gi|315618594|gb|EFU99180.1| DNA replication and repair protein recF [Escherichia coli 3431] gi|320191200|gb|EFW65850.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7 str. EC1212] gi|320193754|gb|EFW68387.1| DNA recombination and repair protein RecF [Escherichia coli WV_060327] gi|320201272|gb|EFW75853.1| DNA recombination and repair protein RecF [Escherichia coli EC4100B] gi|320639425|gb|EFX09040.1| recombination protein F [Escherichia coli O157:H7 str. G5101] gi|320644868|gb|EFX13904.1| recombination protein F [Escherichia coli O157:H- str. 493-89] gi|320650132|gb|EFX18628.1| recombination protein F [Escherichia coli O157:H- str. H 2687] gi|320655480|gb|EFX23415.1| recombination protein F [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661106|gb|EFX28542.1| recombination protein F [Escherichia coli O55:H7 str. USDA 5905] gi|320666232|gb|EFX33238.1| recombination protein F [Escherichia coli O157:H7 str. LSU-61] gi|323155376|gb|EFZ41559.1| DNA replication and repair protein recF [Escherichia coli EPECa14] gi|323164688|gb|EFZ50483.1| DNA replication and repair protein recF [Shigella sonnei 53G] gi|323173318|gb|EFZ58947.1| DNA replication and repair protein recF [Escherichia coli LT-68] gi|323177712|gb|EFZ63296.1| DNA replication and repair protein recF [Escherichia coli 1180] gi|323182495|gb|EFZ67899.1| DNA replication and repair protein recF [Escherichia coli 1357] gi|323189565|gb|EFZ74845.1| DNA replication and repair protein recF [Escherichia coli RN587/1] gi|323376400|gb|ADX48668.1| DNA replication and repair protein RecF [Escherichia coli KO11] gi|323934949|gb|EGB31327.1| DNA replication and repair protein RecF [Escherichia coli E1520] gi|323939116|gb|EGB35330.1| DNA replication and repair protein RecF [Escherichia coli E482] gi|323944172|gb|EGB40252.1| DNA replication and repair protein RecF [Escherichia coli H120] gi|323949943|gb|EGB45827.1| DNA replication and repair protein RecF [Escherichia coli H252] gi|323955006|gb|EGB50784.1| DNA replication and repair protein RecF [Escherichia coli H263] gi|323959765|gb|EGB55415.1| DNA replication and repair protein RecF [Escherichia coli H489] gi|323971177|gb|EGB66423.1| DNA replication and repair protein RecF [Escherichia coli TA007] gi|324008036|gb|EGB77255.1| recombination protein F [Escherichia coli MS 57-2] gi|326337251|gb|EGD61086.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7 str. 1044] gi|326341622|gb|EGD65411.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7 str. 1125] gi|331036718|gb|EGI08944.1| DNA replication and repair protein RecF [Escherichia coli H736] gi|331042024|gb|EGI14168.1| DNA replication and repair protein RecF [Escherichia coli M605] gi|331047375|gb|EGI19453.1| DNA replication and repair protein RecF [Escherichia coli M718] gi|331053257|gb|EGI25290.1| DNA replication and repair protein RecF [Escherichia coli TA206] gi|331057860|gb|EGI29846.1| DNA replication and repair protein RecF [Escherichia coli TA143] gi|331067635|gb|EGI39037.1| DNA replication and repair protein RecF [Escherichia coli TA280] gi|331072970|gb|EGI44295.1| DNA replication and repair protein RecF [Escherichia coli H591] gi|331077795|gb|EGI49007.1| DNA replication and repair protein RecF [Escherichia coli H299] Length = 357 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|1321906|emb|CAA63259.1| recF [Mycobacterium tuberculosis H37Rv] Length = 385 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 30/363 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A + L T+FVG NG GKTN++EA+ + + R ++ + R Sbjct: 3 VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+ + ST +G E D+ I V ++N +R ++ LR Sbjct: 63 VGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G +RRR+LD + P ++ER++R R LL Sbjct: 118 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G FD+ ++++AE G ++ AR++++N L+ + + Q P + + G+ Sbjct: 178 GVFDT--LDLWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLA-PESRSASIGYRASM 234 Query: 232 -LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHG 287 + G +QS + + D+ R L+GPHR DLI+ D+ Sbjct: 235 DVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFA 293 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q+ + Sbjct: 294 SHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLV 351 Query: 348 TGT 350 T Sbjct: 352 TAA 354 >gi|325685103|gb|EGD27234.1| recombination protein F [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 381 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 152/349 (43%), Gaps = 20/349 (5%) Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ G F Sbjct: 9 SGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREMIAFGQ-DF 67 Query: 73 FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 S RV + D+ I + + + +N V + + HL P + Sbjct: 68 ASLAGRVHKRQLDLDLRIVISKKG----KSAWVNRVEQARLSKYVGHLNAILFSPEDLEL 123 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188 G RRRF+D I+P + + +L++ RN L + D + Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQVLLGVLTE 183 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 Q+A ++ R + L+ E + + +L + K + + + Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242 Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302 +KL D D RR T +GPHR DL K AH S G+Q+ + + + LA Sbjct: 243 QKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLA 299 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +LI TG PILLLD++ + LD++++ AL + Q F+T TD Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QIQTFITTTD 347 >gi|312967890|ref|ZP_07782102.1| DNA replication and repair protein recF [Escherichia coli 2362-75] gi|312287451|gb|EFR15359.1| DNA replication and repair protein recF [Escherichia coli 2362-75] Length = 357 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDRHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|206900621|ref|YP_002251531.1| DNA replication and repair protein RecF, putative [Dictyoglomus thermophilum H-6-12] gi|206739724|gb|ACI18782.1| DNA replication and repair protein RecF, putative [Dictyoglomus thermophilum H-6-12] Length = 340 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 32/348 (9%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ I+ +++ FRN++ F + G NG GKT+ILEAI++LS R FR A Sbjct: 5 RMLIESISLKNFRNFSDFSTSFKDGINVIYGPNGSGKTSILEAIAYLSNPRSFRSARDYQ 64 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---RVVDELNKHL 120 + +IG FF +V + +I+I + + + +N + R + E+ + Sbjct: 65 LIKIGE-KFFEITGKVLTGKEHHEITINYYYDELKKEKTAYLNGFKVKRFRDIQEIFIAI 123 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 S+ +M G + +RR F D + +D + + ++E+L+ RN +L D Sbjct: 124 PFSFKDYAM---IDGYATQRRDFFDDIFSLLDLEYYEILRNYEKLLDERNEILKSENIDR 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + +M L KI R MI LS +LD F + Sbjct: 181 DYVIYLAKEMQPLAEKIVEKREAMIKELSK--------------------YLDPMFKVEY 220 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + E K + D + D T +GPH D + Y S G+++++ + + Sbjct: 221 VS--EFKGKNIADYIEEDIARGSTTVGPHVHDDYIFYYKGNPAKYFASEGQKRLLYLSLV 278 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 LA +LI T + P+ L D+ LD + L + ++++ Q+ + Sbjct: 279 LAFRKLIEETKLYEPVFLFDDPINVLDP---HLLEKFISNLSGQVIIA 323 >gi|282860299|ref|ZP_06269368.1| DNA replication and repair protein RecF [Prevotella bivia JCVIHMP010] gi|282586896|gb|EFB92132.1| DNA replication and repair protein RecF [Prevotella bivia JCVIHMP010] Length = 368 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 94/376 (25%), Positives = 166/376 (44%), Gaps = 41/376 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L + F+G NG GKTN+L+AI +LS + ++V Sbjct: 1 MRLDKLSIINYKNIQAATLELSPKLNCFIGHNGEGKTNLLDAIYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDE 115 + F +EG E D V C + N + Sbjct: 61 M-----CHTADFLVLEG-------DYTTEAGDAEQVYCGMKRGSKKHFKRNK---KEYKR 105 Query: 116 LNKHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 L++H+ + L+ P+ + +G S ERR +D ++ D + + + + ++ RN L Sbjct: 106 LSQHIGLVPLIFISPADSSLITGGSEERRHLMDVVISQYDALYMESLSRYNKALQQRNSL 165 Query: 173 L-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 L E D + +E QMAE G K+ R + L + Q + H ++SLT Sbjct: 166 LKQEEEPDETLLELLEGQMAEYGEKVFKKRTAFVEDLQPVFQRIYQAISNEHEQVSLTYV 225 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 G+ ++ + AK D + +L G H+ DL++ + +I GS G+ Sbjct: 226 SHGQRGDLLNVIQRDRAK--------DRIMGYSLHGIHKDDLVMQLGNYSIK-REGSQGQ 276 Query: 292 QKVVLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMT 348 K ++ + LA + TT P+LLLD+I LD ++ + R+V+ D G QIF+T Sbjct: 277 NKTYVLALKLAQFDFLRRTTANNTPLLLLDDIFDKLDANRVEQIIRLVSSDDFG-QIFIT 335 Query: 349 GTDKSVFDSLNETAKF 364 T++ D + + F Sbjct: 336 DTNRDHLDKILQGGAF 351 >gi|218702549|ref|YP_002410178.1| recombination protein F [Escherichia coli IAI39] gi|226737791|sp|B7NR02|RECF_ECO7I RecName: Full=DNA replication and repair protein recF gi|218372535|emb|CAR20410.1| gap repair protein [Escherichia coli IAI39] Length = 357 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|301644372|ref|ZP_07244373.1| recombination protein F [Escherichia coli MS 146-1] gi|301077313|gb|EFK92119.1| recombination protein F [Escherichia coli MS 146-1] Length = 357 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 158/361 (43%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTCYEQ-LRPWDKE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E +++ + + K+ P L+ + F G ++ EYA+ Sbjct: 181 LIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------EYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++DL + D A S G+ K+++ + LA ++ Sbjct: 233 VLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K + Sbjct: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 Query: 369 N 369 Sbjct: 352 K 352 >gi|317120852|ref|YP_004100855.1| DNA replication and repair protein RecF [Thermaerobacter marianensis DSM 12885] gi|315590832|gb|ADU50128.1| DNA replication and repair protein RecF [Thermaerobacter marianensis DSM 12885] Length = 400 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 165/377 (43%), Gaps = 36/377 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +FR+Y L + T+ VG NG+GKTN+LEAI F + GR R + AD+ R Sbjct: 3 IRRVVLRQFRSYERATLELEPGLTLLVGPNGIGKTNLLEAIHFAATGRSPRTSRDADLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G P + RVE + +A + L+++ R V +L+ L + + Sbjct: 63 NGEP---VCYVRVEWDDPVAGRRAVEMAYHREQGKALRLDGRKRRRVADLHGALPVVYFA 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183 P + RR +LDR++ + P + + D++R++ RN+LL E G +S Sbjct: 120 PESLALVKAGPAARRDYLDRLLVQVVPGYGPLLHDYQRVLAQRNQLLREIRAGRAAASLL 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE------NFPHIKLSLTGFL--DGK 235 + + + G + R +++ L+ L+ + +KL G+L DG Sbjct: 180 AIWDEPLLRHGTALRRHRQALLDELAPLVAAAAARVEAGGAVGPGEVKL---GYLAGDGP 236 Query: 236 FDQSFCALKEEYA-----------------KKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 D + +EE + L + + TL GP R D + Sbjct: 237 GDAAHEPGREEPSGAPEEAGDPGQRAAGVPPSLAAWHREEIARGTTLWGPQRDDFAI-LL 295 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 D A S G+Q+ + + + LA LI G P+LLLD++ + LD +R L V Sbjct: 296 DGRDARAFASQGQQRALALALTLAEVHLIHRRLGRWPVLLLDDVLSELDARRRRHLLETV 355 Query: 339 TDIGSQIFMTGTDKSVF 355 + Q+ +T TD+ + Sbjct: 356 AGL-PQVIVTATDEPAW 371 >gi|237741010|ref|ZP_04571491.1| DNA replication and repair protein recF [Fusobacterium sp. 4_1_13] gi|229431054|gb|EEO41266.1| DNA replication and repair protein recF [Fusobacterium sp. 4_1_13] Length = 369 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/354 (22%), Positives = 161/354 (45%), Gaps = 21/354 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +LN FRN + + + +F G N GKT++LEAI + S G F+ +++ + Sbjct: 6 ITYLN---FRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRISWL 125 F S+ + + +A+ I + ++ + + N I D K + I Sbjct: 63 YNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGK-VNIIAY 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 119 IPEDIILINGSPKHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243 E + + I R+E + +LS ++ ++Y + N + L LD + + Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEMI 238 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-----GSTGEQKVVLVG 298 +E K++ + + + +L+GPH+ D K + H S GE+K ++ Sbjct: 239 QESLKKEILQKKYQEDRYKFSLVGPHKDDY------KFLLNGHEAKFSASQGEKKSIIFS 292 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L+ +I P++++D+I+++ DED+R ++ Q+ ++ TDK Sbjct: 293 LKLSEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346 >gi|262066870|ref|ZP_06026482.1| RECF protein [Fusobacterium periodonticum ATCC 33693] gi|291379421|gb|EFE86939.1| RECF protein [Fusobacterium periodonticum ATCC 33693] Length = 369 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/350 (22%), Positives = 162/350 (46%), Gaps = 13/350 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +LN FRN + + + +F G N GKT++LEAI + S G F+ ++ + Sbjct: 6 ISYLN---FRNLENTSVELSEKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTTEMIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F S+ + + + IS++ + + + N I D K + I + Sbjct: 63 YNFDEFISSISYSDYIAN-NKISVRFKNIPG-AKKEFFFNKKRISQTDFYGK-INIIAYI 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + +G RR F D + ID + + ++++L++ RN+ L E ++ + Sbjct: 120 PEDIILINGSPKNRRDFFDIEISQIDKEYLNNLKNYDKLLKIRNKYLKENKRNTEEFAIY 179 Query: 187 EAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCALK 244 E + + I R+E + +LS ++ ++Y + N + L LD + ++ Sbjct: 180 EKEFIKYASYIIFTRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTIEMIQ 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E K++ + + R +L+GPH+ D +++ + I+ S GE+K ++ + L+ Sbjct: 240 ESLQKEISQKKYQEDRYRFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +I P++++D+I+++ DE++R ++ Q+ ++ TDK Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEERRKSILEFFNKRDIQVLISSTDK 346 >gi|290548|gb|AAA62051.1| recF (CG Site No. 308) [Escherichia coli] Length = 357 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAXRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|308171895|ref|YP_003918600.1| DNA repair and genetic recombination factor [Bacillus amyloliquefaciens DSM 7] gi|307604759|emb|CBI41130.1| DNA repair and genetic recombination factor [Bacillus amyloliquefaciens DSM 7] gi|328551704|gb|AEB22196.1| recombination protein F [Bacillus amyloliquefaciens TA208] gi|328909963|gb|AEB61559.1| DNA repair and genetic recombination factor [Bacillus amyloliquefaciens LL3] Length = 370 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 88/390 (22%), Positives = 169/390 (43%), Gaps = 54/390 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ R Sbjct: 3 IQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +A++EG M+ DI ++L + + ++N + + + + L Sbjct: 63 -----WDEDYAKIEGRVMKRNGDIPMQLVI--SKKGKKGKVNHIEQQKLSQYVGALNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRFLD + + + + +++++ RN L + D Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQRNHFLKQLQSRKQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIK 225 + + Q+ E K+ R++ L L ++Y H Sbjct: 176 TMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKY-------HTA 228 Query: 226 LSLTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 L ++ D + +SF LKE+ ++ TL GPHR D++ Y + Sbjct: 229 LDVSDPKDLSKIGNSYQESFSKLKEKEIERGV-----------TLFGPHRDDVLF-YVNG 276 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 +GS G+Q+ + + LA LI G PILLLD++ + LD+ +++ L + Sbjct: 277 RDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG 336 Query: 341 -IGSQIFMTGTDKSVFDSLNETAKFMRISN 369 + + + T D ++L++ F R+ N Sbjct: 337 RVQTFVTTTSVDGIDHETLHQAGMF-RVEN 365 >gi|302535569|ref|ZP_07287911.1| recombination protein F [Streptomyces sp. C] gi|302444464|gb|EFL16280.1| recombination protein F [Streptomyces sp. C] Length = 378 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 100/360 (27%), Positives = 156/360 (43%), Gaps = 24/360 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + T FVG NG GKTN++EAI +L+ R +S A + Sbjct: 1 MHVSHLSLADFRSYARAEVPLAPGVTAFVGPNGQGKTNLVEAIGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R +G ++LE R+ R +R D L +R Sbjct: 61 VRMGA---DRAVIRAAVTQGERQQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD +V A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFL 232 D S + +A G ++ R+++I L L E + P + L+ Sbjct: 177 RSMDLSTLDVWDQHLARAGAELLAQRLDLIATLLPLADKAYEQLAPGGGP-LALAYKSSA 235 Query: 233 DGKFDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 D +EE + L RK + TL GPHR DL++ D + S Sbjct: 236 GDPVDNGAARTREELYEVLLATLSQVRKQEIERGVTLAGPHRDDLLLRLGDLPAK-GYAS 294 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ + G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 295 HGESWSYALALRLASYELL-RSEGAEPVLILDDVFAELDARRRERLAELVAG-GEQVLVT 352 >gi|256846676|ref|ZP_05552132.1| DNA replication and repair protein recF [Fusobacterium sp. 3_1_36A2] gi|294784383|ref|ZP_06749674.1| RECF protein [Fusobacterium sp. 3_1_27] gi|256717896|gb|EEU31453.1| DNA replication and repair protein recF [Fusobacterium sp. 3_1_36A2] gi|294487955|gb|EFG35310.1| RECF protein [Fusobacterium sp. 3_1_27] Length = 369 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/351 (21%), Positives = 164/351 (46%), Gaps = 15/351 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +LN FRN + + + +F G N GKT++LEAI + S G F+ +++ + Sbjct: 6 ITYLN---FRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRISWL 125 F S+ + + +A+ I + ++ + + N I D K + I Sbjct: 63 YNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGK-VNIIAY 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 119 IPEDIILINGSPKHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243 E + + I R+E + +LS ++ ++Y + N + L LD + + Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEMI 238 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +E K++ + + + +L+GPH+ D +++ + ++ S GE+K ++ + L Sbjct: 239 QESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGHEAKVS---ASQGEKKSIIFSLKL 295 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + +I P++++D+I+++ DED+R ++ Q+ ++ TDK Sbjct: 296 SEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346 >gi|188491708|ref|ZP_02998978.1| DNA replication and repair protein RecF [Escherichia coli 53638] gi|188486907|gb|EDU62010.1| DNA replication and repair protein RecF [Escherichia coli 53638] Length = 357 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 159/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAAHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|193211679|ref|YP_001997632.1| DNA replication and repair protein RecF [Chlorobaculum parvum NCIB 8327] gi|259563359|sp|B3QQY5|RECF_CHLP8 RecName: Full=DNA replication and repair protein recF gi|193085156|gb|ACF10432.1| DNA replication and repair protein RecF [Chlorobaculum parvum NCIB 8327] Length = 368 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 85/357 (23%), Positives = 165/357 (46%), Gaps = 18/357 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ ++I+ FRN+ L F+ H++ G NG GKT+ILEAI + + RGF + Sbjct: 1 MRLDSISIANFRNHTLLE--FEPGHSVTNIYGRNGSGKTSILEAIHYCALTRGFSGNNDR 58 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + + G F+ + +G+A + + R R L +N+ ++ + Sbjct: 59 EYLKFGE-ELFTIRSSFTSGQGIA-TKVSVAYSPKREKRIL-VNEQELQTFSSHIGTIPC 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFD 179 P I +G ERRRF+D + D ++ ++ + R+++ RN LL+ + F Sbjct: 116 VTFTPREMVIINGAPAERRRFIDTAICQYDRKYLSDLLLYRRILQQRNALLSSEQDPRFI 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHI-KLSLTGFLDGK 235 S + Q+ +I + R I +S+ + +++ + P I S G + Sbjct: 176 DSALDVLTDQLVATATEIVLVRKRFIEHFTSMLGDVYQWIPEGAEPSILYQSSLGHHENL 235 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 +++ +++ + ++ ++ + R+TL GPHR DL Y +K + S G+Q+ Sbjct: 236 YEKD--KIQQVFRERFETLKQQELQRRQTLAGPHRDDLQF-YLNKREIRKYASQGQQRAF 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 LV + + + +G PI LLD++ + LDE + + G Q+ +T T K Sbjct: 293 LVAMKMTLQGYLYEASGEIPITLLDDLFSELDEVVSGTMVETLATKG-QVIITSTGK 348 >gi|300362675|ref|ZP_07058851.1| recombination protein F [Lactobacillus gasseri JV-V03] gi|300353666|gb|EFJ69538.1| recombination protein F [Lactobacillus gasseri JV-V03] Length = 374 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 157/356 (44%), Gaps = 32/356 (8%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +FRN+ L+ FD IF+G N GKTN+LEAI FL+ R R S ++ R G Sbjct: 8 LKDFRNFKELKTNFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 S FA ++G + + ++L+ R + + +N + + + + P Sbjct: 65 --SKFAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKRLSAYVGQMNAILFSPEDLA 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + G RRRF+D I+ + + ++++ RN L + D + + Sbjct: 123 LVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQLSIKKANDQVFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-----LTGFLDGKFDQSFCA 242 Q+A + +I R++ I L+S Y Q H ++S L F + Sbjct: 183 DQLAGIAAEIISRRIKYIKKLNS----YAQA---AHSEISGQAEKLQIFYRPSVKEIIPE 235 Query: 243 LKEE--YAKKLFDGRKMDSMSRR---TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVV 295 E Y K + +K S R TL GPHR DL DK AH S G+Q+ + Sbjct: 236 DDVETIYQKVITSYKKNRSNEIRKGTTLSGPHRDDLEFLINDKN---AHDFASQGQQRTI 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + LA +L+ PILLLD++ + LD +++ L + +Q F+T TD Sbjct: 293 SLSVKLAEIQLVHELKQEYPILLLDDVMSELDHRRQSRLLNYIHG-KTQTFITTTD 347 >gi|239980784|ref|ZP_04703308.1| recombination protein F [Streptomyces albus J1074] gi|291452642|ref|ZP_06592032.1| recombination protein F [Streptomyces albus J1074] gi|291355591|gb|EFE82493.1| recombination protein F [Streptomyces albus J1074] Length = 377 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 101/361 (27%), Positives = 162/361 (44%), Gaps = 27/361 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA L D T FVG NG GKTN++EA+ +L+ R +S + Sbjct: 1 MHVSHLSLADFRSYARADLALDPGVTAFVGPNGQGKTNLVEAVGYLATLSSHRVSSDQPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A VE E I ++L R + + V R V + +R Sbjct: 61 VRAGAERAV-IRAAVEHGERRRTIELELNPGKANRARINRSSQVKPRDVLGI---VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD +V A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYDRVLKQRNTLLKTAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP-HIKLSLTGF 231 D S + +A G ++ R+++I L L E + P H++ + Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLIATLQPLTDKAYEQLAPGGGPVHLEYKPSAA 236 Query: 232 LDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 G ++ + +L E A+ RK + TL+GPHR DL++ D + S G Sbjct: 237 GTGTTREELYGSLLEALAEV----RKQEIERGVTLVGPHRDDLLLRLGDLPAK-GYASHG 291 Query: 291 EQKVVLVGIFLAHARLISNTTGFA---PILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 E + + + LA L+ G A P+L+LD++ A LD +R L +V G Q+ + Sbjct: 292 ESWSLALALRLASYDLLRTEGGEATGEPVLVLDDVFAELDARRRERLAELVAP-GEQVLV 350 Query: 348 T 348 T Sbjct: 351 T 351 >gi|34540225|ref|NP_904704.1| recF protein [Porphyromonas gingivalis W83] gi|51316314|sp|Q7MX24|RECF_PORGI RecName: Full=DNA replication and repair protein recF gi|34396537|gb|AAQ65603.1| recF protein [Porphyromonas gingivalis W83] Length = 364 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 160/381 (41%), Gaps = 38/381 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L+I F++ A+ F + VG+NG+GKTN+L+A+ FLS R V R Sbjct: 3 IEELHIVNFKSIAAADCRFSPKVNCLVGNNGMGKTNLLDALHFLSFCRSHLSVPDNMVVR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + R E +G I + L R + + R+ D + + + + Sbjct: 63 HGEEMALLQGLYRDESGDG---IELLLSIRPGKHKVLRRNKKEYERLSDHIGR-FPLVIV 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P ++ G S ERRRF+D+ + DPR+ +I + R ++ RN +L + D + Sbjct: 119 SPQDYQLILGGSDERRRFMDQQLCQQDPRYLSALIQYNRHLQQRNTMLKQDRHDDALMDV 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +E QM +I R I + + + K+SL+ Sbjct: 179 LELQMGSYAAEICNKRSRFIEDFLPVFNDLYSDISGSAEKVSLS---------------- 222 Query: 246 EYAKKLFDGRKMDSMSRRTL----------IGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 Y L DG ++ + RR+ G H+ +L + + GS G+ K Sbjct: 223 -YRSHLADGIPLEELLRRSRPKDYLLGFSSCGVHKDELEM-LLGGVLIRKIGSEGQNKTF 280 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSV 354 L+ + LA R PILLLD+I LD + + R+V G QIF+T T++ Sbjct: 281 LISMKLAQFRHQQLHGDETPILLLDDIFDKLDATRVERIIRLVGGNGFGQIFITDTNRKN 340 Query: 355 FD----SLNETAKFMRISNHQ 371 D S +E + +I N Q Sbjct: 341 LDEIIASWSEDYRLFKIENGQ 361 >gi|313203095|ref|YP_004041752.1| DNA replication and repair protein recf [Paludibacter propionicigenes WB4] gi|312442411|gb|ADQ78767.1| DNA replication and repair protein RecF [Paludibacter propionicigenes WB4] Length = 363 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 93/362 (25%), Positives = 161/362 (44%), Gaps = 39/362 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N LVF F+G+NG+GKTNIL+AI FLS + + Sbjct: 1 MRLNSLSILNYKNIREAELVFSPNINCFIGNNGMGKTNILDAIYFLSFCKSHSNS----- 55 Query: 65 TRIGSPSFF--STFARVEGMEGLAD----ISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 I S + + F ++G L D I ++ R + + + + + L+ Sbjct: 56 --IDSQNILHGAEFCLLQGKYTLGDQTEDIYCGMKMRQKKQFKRNK------KEYERLSD 107 Query: 119 HLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174 H+ + LV P + G S ERR+F+D ++ + + ++ + ++ RN LL + Sbjct: 108 HIGLLPLVLVSPDDSELIQGGSEERRKFIDGVISQYNKTYLNNLLQYNNALKQRNALLKS 167 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 E D S E QMA G I R I+ + Y + + ++SL+ + Sbjct: 168 EKPVDDSLLDIWEEQMAAFGNYIYEQRKLFIDEFIPVFQNYYSYISVGNEQISLS-YHSQ 226 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGSTGE 291 D+ K+ R D + + G H+ DL + DY K + GS G+ Sbjct: 227 HHDRDI-------KTKMLATRDRDRILGYSTQGIHKDDLEMLLGDYPIKRV----GSQGQ 275 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGT 350 K L+ + LA + T +P+LLLD+I LD + + +V+ D QIF+T T Sbjct: 276 NKTYLISLKLAQFDFLKRTHNLSPLLLLDDIFDKLDSVRVKKIIELVSGDTFGQIFITDT 335 Query: 351 DK 352 ++ Sbjct: 336 NR 337 >gi|15834965|ref|NP_296724.1| recombination protein F [Chlamydia muridarum Nigg] gi|270285139|ref|ZP_06194533.1| recombination protein F [Chlamydia muridarum Nigg] gi|270289161|ref|ZP_06195463.1| recombination protein F [Chlamydia muridarum Weiss] gi|301336534|ref|ZP_07224736.1| recombination protein F [Chlamydia muridarum MopnTet14] gi|13959495|sp|Q9PKW5|RECF_CHLMU RecName: Full=DNA replication and repair protein recF gi|7190387|gb|AAF39207.1| recF protein, putative [Chlamydia muridarum Nigg] Length = 365 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 84/355 (23%), Positives = 149/355 (41%), Gaps = 12/355 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY+ LRL + G N GKTNILEA+ LS GR FR + + Sbjct: 1 MRVHSLFLKDFRNYSELRLELGPEMNSIFGLNAQGKTNILEALYILSLGRSFRTSRLTEA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FF +E + + L + D+ + + + I + L + Sbjct: 61 IRFGSSHFF-----IEAVFSQNQVFHTLSIQVDKRGKKILFDGAPITKLSALVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFD-SSW 182 I G ERRRFLD ++ ++ ++ + + + RN + T+ Y ++W Sbjct: 116 FSVKDTTIIEGSPAERRRFLDLLLAQASEKYTGQIALYHKALDQRNAAIKTQDYKTIAAW 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S + A G + + R E L + + L L + Sbjct: 176 NSPLIA----YGSLVALLRYECAKKLHKIFQNLWDNTLKETLSLRYESSLITTESPTLND 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + Y ++L D T +GPHR +LI+ D ++ S G++ +L + A Sbjct: 232 IASNYYEQLRLANTKDFELGYTTVGPHRDELIITLNDLPVS-KFSSEGQKHSLLAVLRFA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + P+L +D+I A LD+++ + LF++ T +G + + + DS Sbjct: 291 ECVYLQEEFLIHPLLCMDDIHACLDQNRLDQLFQLSTSLGQTVTTSTICPNHLDS 345 >gi|242237463|ref|YP_002985644.1| recombination protein F [Dickeya dadantii Ech703] gi|242129520|gb|ACS83822.1| DNA replication and repair protein RecF [Dickeya dadantii Ech703] Length = 361 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 156/364 (42%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR A V R Sbjct: 6 LLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F R+ G E + + D +VR I+ V EL + L I + P Sbjct: 66 AEFI-LHGRIAGAERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL+R RN L + ++ +W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFMAWSNLKRLLRQRNAALRQVNHYGQLRAW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E A+++ I + P LS + F G +S + Sbjct: 178 DQELVPLAERISQWRAEYSAAIATDIASTC-AQFLPEFSLSFS-FQRGWDKES------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T +GPH++D + A+ S G+ K+++ + LA Sbjct: 230 YAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ G + L+D+ ++ LD +R L + +Q+F++ T + + D + E K Sbjct: 289 LTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGKMF 348 Query: 366 RISN 369 R+ Sbjct: 349 RVEQ 352 >gi|282896236|ref|ZP_06304259.1| RecF protein [Raphidiopsis brookii D9] gi|281198925|gb|EFA73803.1| RecF protein [Raphidiopsis brookii D9] Length = 371 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 91/378 (24%), Positives = 174/378 (46%), Gaps = 54/378 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + FRNY ++ F A TI VG+N GK+N+LE++ L+ R R +D + Sbjct: 3 LQSLELRNFRNYQEQKVEFTAPKTILVGNNAQGKSNLLESVELLATLRSHRLGKDSDFIQ 62 Query: 67 IGSPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 G AR+ + G++++++ L R+ R R + IN +R + + Sbjct: 63 EG-----QDMARINAILDRTTGISNLTLNLR-RNSR--RTVAINGETVR------RQMDF 108 Query: 123 SWLVPSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173 ++ +++ FS L +E RR +LD ++ ++P + + + +++R RN L Sbjct: 109 LGILNAVE--FSSLDLELVRGSPAIRRSWLDTLLVQLEPVYAHILHQYNQVLRQRNAFLK 166 Query: 174 ---TEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKE 219 +G + S + +AQ+ G K+ R I L + ME ++ Sbjct: 167 TIQQKGIKNHDSELAIWDAQLVTTGTKVMRRRNRAIQRLGPIATHWHSSISGKMEKLEIN 226 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 P++ + +D + + L + + ++ + ++S TL+GPHR D I + Sbjct: 227 YMPNVPI----LIDEQQE-----LLQFFLDRVQEHSAIESYRGTTLVGPHR-DEIELVVN 276 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + S G+Q+ +++ + LA +LI P+LLLD++ A LD ++N L + Sbjct: 277 GTPARQYASQGQQRTLVLALKLAELQLIEEVVNDTPLLLLDDVLAELDLSRQNQLLDAIQ 336 Query: 340 DIGSQIFMTGTDKSVFDS 357 D Q +T T FD+ Sbjct: 337 D-RFQTLITTTHLGAFDA 353 >gi|116628687|ref|YP_813859.1| recombination protein F [Lactobacillus gasseri ATCC 33323] gi|238853342|ref|ZP_04643722.1| DNA replication and repair protein RecF [Lactobacillus gasseri 202-4] gi|311111573|ref|ZP_07712970.1| DNA replication and repair protein RecF [Lactobacillus gasseri MV-22] gi|122274315|sp|Q047F1|RECF_LACGA RecName: Full=DNA replication and repair protein recF gi|116094269|gb|ABJ59421.1| DNA replication and repair protein RecF [Lactobacillus gasseri ATCC 33323] gi|238834030|gb|EEQ26287.1| DNA replication and repair protein RecF [Lactobacillus gasseri 202-4] gi|311066727|gb|EFQ47067.1| DNA replication and repair protein RecF [Lactobacillus gasseri MV-22] Length = 374 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 90/356 (25%), Positives = 156/356 (43%), Gaps = 32/356 (8%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +FRN+ L+ FD IF+G N GKTN+LEAI FL+ R R S ++ R G Sbjct: 8 LKDFRNFKELKTDFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 S FA ++G + + ++L+ R + + +N + + + + P Sbjct: 65 --SKFAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKKLSAYVGQMNAILFSPEDLA 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + G RRRF+D I+ + + ++++ RN L + D + + Sbjct: 123 LVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQLSIKKANDQVFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLTGFLDGKFD 237 Q+A + +I R++ I L+S E +Q P +K + + + Sbjct: 183 DQLAGIAAEIISRRIKYIKKLNSYAKAAHSEISGQAEKLQIFYRPSVKEIIP---EDNVE 239 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVV 295 + + Y K R + TL GPHR DL +K AH S G+Q+ + Sbjct: 240 TIYRKVITSYKK----NRPNEIRKGTTLSGPHRDDLEFLINEKN---AHDFASQGQQRTI 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + LA +L+ T PILLLD++ + LD +++ L + +Q F+T TD Sbjct: 293 SLSVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSRLLNYIHG-KTQTFITTTD 347 >gi|297158794|gb|ADI08506.1| recombination protein F [Streptomyces bingchenggensis BCW-1] Length = 407 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 99/387 (25%), Positives = 159/387 (41%), Gaps = 49/387 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + T FVG NG GKTN++EA+ +++ R ++ A + Sbjct: 1 MHVTHLSLADFRSYARAEVALGPGVTAFVGPNGQGKTNLVEAVGYVATLGSHRVSADAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A VEG ++LE ++ R +R D L LR Sbjct: 61 VRMGADRAVVRAAIVEGDR---QQLVELELNPGKANRARINRSSQVRPRDVLGI-LRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRADYERVLKQRNTLLKTAALARRHGG 176 Query: 181 ----------SWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLS 227 S + +A G ++ R+++I AL L E + P Sbjct: 177 GRGSGGDGALSTLDVWDQHLARAGAELLAQRLDLIAALQPLTDKAYEQLAPGGGPIGFDY 236 Query: 228 LTGFLDG-KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 + DG + L E+ + L RK + TL+GPHR DLI+ + + Sbjct: 237 RSSVGDGLAAAGTREELYEQLSAALTAARKQEIERGVTLVGPHRDDLILRLGELPAK-GY 295 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFA-------------------------PILLLDE 321 S GE + + LA L+ +A P+L+LD+ Sbjct: 296 ASHGESWSYALALRLASYDLLRADISWAPGGLSAEAAEAAGGGEAGAVRRAGEPVLVLDD 355 Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMT 348 + A LDE +R L +V G Q+ +T Sbjct: 356 VFAELDERRRERLAELVAP-GEQVLVT 381 >gi|15806109|ref|NP_294813.1| recombination protein F [Deinococcus radiodurans R1] gi|13959503|sp|Q9RVE0|RECF_DEIRA RecName: Full=DNA replication and repair protein recF gi|126031361|pdb|2O5V|A Chain A, Recombination Mediator Recf gi|6458823|gb|AAF10663.1|AE001959_3 recF protein [Deinococcus radiodurans R1] Length = 359 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 97/376 (25%), Positives = 165/376 (43%), Gaps = 36/376 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+ +RN A L F T G+NG GKTN+LEA G+ D Sbjct: 4 VRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ-------TDA 56 Query: 65 TRIGS---PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 RI + R + +G +SI+ E R R L+++ V R D L + Sbjct: 57 PRIEQLIQAGETEAYVRADLQQG-GSLSIQ-EVGLGRGRRQLKVDGVRARTGD-LPRGGA 113 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + W+ P + G RR +LD ++ + R+ ++ +ER + RN L G Sbjct: 114 V-WIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQRNAALRGG---EE 169 Query: 182 WCSSI-EAQMAELGVKINIARVEMINALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQS 239 W + + + +LG +I + R + L L E Q + + L+LT Sbjct: 170 WAMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLT---------- 219 Query: 240 FCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 E YA L GR+ + ++R T+ GPHR DL++ D + + S GE + V + Sbjct: 220 ESTSPETYAADL-RGRRAEELARGSTVTGPHRDDLLLTLGDFPAS-DYASRGEGRTVALA 277 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + A L+ G P+LLLD+ +A LD +R L + + Q +TGT+ + +L Sbjct: 278 LRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV-PQAIVTGTELAPGAAL 336 Query: 359 N---ETAKFMRISNHQ 371 + +F +++ + Sbjct: 337 TLRAQAGRFTPVADEE 352 >gi|269216528|ref|ZP_06160382.1| DNA replication and repair protein RecF [Slackia exigua ATCC 700122] gi|269130057|gb|EEZ61139.1| DNA replication and repair protein RecF [Slackia exigua ATCC 700122] Length = 379 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 98/382 (25%), Positives = 172/382 (45%), Gaps = 56/382 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ ++ FRNY S + T+F+G N GK+N+LEAI ++ FR A ++ Sbjct: 3 LHIQSFSLRNFRNYRSFEMDDVDPLTMFIGPNATGKSNVLEAIQLVTSATTFRGAKSREM 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKL--ETRD-DRSVRCLQINDVVIRVVDELNKHLR 121 R G AD+ + +TRD + S+R + + + V+ KH + Sbjct: 63 IRWGCD--------------CADVKAHIVSDTRDLETSMRLTESSRSI--AVNGKRKHGQ 106 Query: 122 -ISWLVPSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 + ++PS+ +FS M+ RR LD + + HR D+ ++++ +N L Sbjct: 107 DVLGILPSV--MFSPEDMQLVTGAHGFRRDALDALGSQLSRTHRVLRRDYLKIVKHKNSL 164 Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS---------------SLIMEYVQ 217 + G + S S+ + G + + R + + L+ +L M YV Sbjct: 165 MKNG-IEGSLLDSVNDMLVTSGAHLYVYRAALFDNLAVRIARAYSEISSSGETLDMRYVP 223 Query: 218 KENFPHIKLSLTGFLDGK--FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 ++ L D F+ C+ + LF+ +S R L+GPH +D + Sbjct: 224 --SWEDADLYSDRMRDAAHFFEVEECS--NRMRRSLFNRHDEESRRGRALVGPH-ADKLF 278 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 Y D +GS G+++ + + +A LI + G PILLLD++++ LDE +R AL Sbjct: 279 FYLDGRNATLYGSQGQRRSIALSWKIAEIGLIEDVLGLKPILLLDDVASELDESRREALI 338 Query: 336 RIV-TDIGSQIFMTGTDKSVFD 356 ++ DI Q F+T TD F+ Sbjct: 339 GLLHHDI--QTFITTTDMGAFE 358 >gi|303237205|ref|ZP_07323775.1| DNA replication and repair protein RecF [Prevotella disiens FB035-09AN] gi|302482592|gb|EFL45617.1| DNA replication and repair protein RecF [Prevotella disiens FB035-09AN] Length = 371 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 163/367 (44%), Gaps = 33/367 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I ++N + L A+ F+G NGVGKTN+L+A+ +LS + ++V Sbjct: 6 LSIINYKNIQAATLNLSAKLNCFIGHNGVGKTNLLDAVYYLSFCKSAFNPKDSEVM---- 61 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDELNKHL 120 S F +EG +++ + V C + N + + E L Sbjct: 62 -CHESDFFVLEG-------DYTMDSEEIEQVTCGMKRGTKKHFKRNRKAYKKLSEHIGLL 113 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFD 179 + ++ PS + G S ERR+ +D ++ D + ++ + + ++ RN LL E D Sbjct: 114 PLIFVSPSDISLIEGGSEERRKLMDVVISQYDRPYIETLLRYNKALQQRNSLLKQEEEPD 173 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 ++ +E QMAE G +I R + L + E Q + ++SL G+ Sbjct: 174 TTLLELLEMQMAEYGTEIYKKRAAFVEQLVPVFQEIYQAISQNREQVSLEYISHGQRGDL 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++ + AK D + +L G H+ DL++ + GS G+ K ++ + Sbjct: 234 LDVIQRDRAK--------DRIMGYSLHGIHKDDLLMTLGGFPMK-REGSQGQNKTFVLAL 284 Query: 300 FLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDS 357 LA + T G P+LLLD+I LD D+ + ++V D QIF+T T++ D Sbjct: 285 KLAQFNFLKQTAGNRTPLLLLDDIFDKLDADRVEQIVKLVAGDSFGQIFITDTNRDHLDK 344 Query: 358 LNETAKF 364 + ++ F Sbjct: 345 ILSSSNF 351 >gi|300769989|ref|ZP_07079868.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33861] gi|300762465|gb|EFK59282.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33861] Length = 368 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 167/377 (44%), Gaps = 38/377 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ F+NY L F + F G+NG GKTN+L+AI +LS + + + + Sbjct: 3 LKQLSVLNFKNYTESALEFLPEVNAFAGENGAGKTNLLDAIHYLSLCKSYFNPIDSQHIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC----------LQINDVVIRVVDEL 116 G F V+G S + +TR D + C + R+ D + Sbjct: 63 QGMDWFM-----VQG-------SFENDTRTD-VISCSLKKNQKKQFKKNKKDYPRLADHI 109 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE- 175 + + + P+ I + S ERR+F+D ++ D + ++I + +++ RN +L + Sbjct: 110 GQ-FPLVMISPNDSMIITDGSEERRKFMDNVISQTDHHYLDKLITYNKVILQRNIMLKQA 168 Query: 176 ---GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 G D + Q+ E+G +I R + + + E+ + +F + Sbjct: 169 RESGQLDLGLLEVLNLQLVEVGAQIFEKRQQF---MKDFLPEFEKHYHFLTESAEQVSLV 225 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 ++ + ++ L + D RT G H+ DL+ + GS G+Q Sbjct: 226 ---YESPLMTI--DFQDLLDRNLERDRALERTSQGIHKDDLLFTIHEGMPLKKFGSQGQQ 280 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD 351 K L+ + LA + + GF P+LLLD+I LDE + L ++V+ D QIF+T TD Sbjct: 281 KSFLIALKLAQYSFLQSRKGFKPLLLLDDIFDKLDERRTRKLMQMVSEDDFGQIFLTDTD 340 Query: 352 -KSVFDSLNETAKFMRI 367 + V E A+ +RI Sbjct: 341 SERVQRIFEEIAQPIRI 357 >gi|256424433|ref|YP_003125086.1| DNA replication and repair protein RecF [Chitinophaga pinensis DSM 2588] gi|256039341|gb|ACU62885.1| DNA replication and repair protein RecF [Chitinophaga pinensis DSM 2588] Length = 360 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 87/356 (24%), Positives = 157/356 (44%), Gaps = 29/356 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ +F+NY+ F + G NG GKTN+L+AI ++ + + +S A Sbjct: 2 LSLKKISLVQFKNYSGKSFSFHKRIVGITGRNGSGKTNLLDAIYYICFTKSYFTSSEAQN 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 T+ + F R+EG K+ + +ND + Sbjct: 62 TQYQTNGF-----RLEGFMDRDHQEGKIVCTLKDGKKEFALNDEAYERFSQHIGRYPAVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P I G S ERR++LD ++ + P + +I ++++++ +N LL +G Sbjct: 117 IAPDDAEIILGGSEERRKWLDALLCQLHPGYLDHLITYQKILQQKNTLLKTMNGQGGSQD 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--- 237 + + Q+ + G + E A ++ VQK L +L GK + Sbjct: 177 TLLDIFDEQLVKHGTPV----FEWRRAFLPGFIQQVQK---------LYDYLAGKHETVN 223 Query: 238 -QSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 Q L E+ + + L R D M +RT G H+ DL D + + S G++K Sbjct: 224 IQYQSGLHEQTFTELLAANRYKDMMMQRTTGGIHKDDLQFVLDDHPMKTS-ASQGQRKSF 282 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT 350 L + LA +I F P+LLLD++ LD+D+ + L +V+ + Q+F+T T Sbjct: 283 LFALKLAQFEVIKEHKKFPPLLLLDDVFEKLDQDRVSRLINLVSSPVYGQVFITDT 338 >gi|194431058|ref|ZP_03063351.1| DNA replication and repair protein RecF [Shigella dysenteriae 1012] gi|194420513|gb|EDX36589.1| DNA replication and repair protein RecF [Shigella dysenteriae 1012] gi|320180041|gb|EFW54983.1| DNA recombination and repair protein RecF [Shigella boydii ATCC 9905] gi|332084050|gb|EGI89257.1| DNA replication and repair protein recF [Shigella dysenteriae 155-74] Length = 357 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLIKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|82546036|ref|YP_409983.1| recombination protein F [Shigella boydii Sb227] gi|97180953|sp|Q31UV3|RECF_SHIBS RecName: Full=DNA replication and repair protein recF gi|81247447|gb|ABB68155.1| RecF [Shigella boydii Sb227] gi|320185535|gb|EFW60301.1| DNA recombination and repair protein RecF [Shigella flexneri CDC 796-83] gi|332089378|gb|EGI94482.1| DNA replication and repair protein recF [Shigella boydii 3594-74] Length = 357 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLVEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|332881092|ref|ZP_08448760.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681004|gb|EGJ53933.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 359 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 95/363 (26%), Positives = 163/363 (44%), Gaps = 46/363 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + + ++N +S L F A FVG+NG GKTN+L+AI L G+ + S R Sbjct: 3 LKKVTVVNYKNISSKTLEFSATINCFVGNNGAGKTNLLDAIYHLGMGKSYFSPSAVQNIR 62 Query: 67 IGSP-----SFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 FF + +R E + L K+ + ++ R+ D + K+ Sbjct: 63 HDEDFYLIDGFFESNSREEQIVCSLKKGQKKMMKHNGKAYE---------RLSDHIGKYP 113 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----- 175 + D I G S RR+FLD ++ D + +I + RL+ RN LL + Sbjct: 114 MVIISPADRDLIVEG-SETRRKFLDSVIAQTDREYLELLIRYNRLLLQRNTLLKQIAESG 172 Query: 176 -GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYV-----QKENFPHIKLSL 228 FD+ +AQ+A LG I R + + + + +Y Q+E +K+ Sbjct: 173 ISAFDT--LQVYDAQLAPLGQFIYEKRRQFMEGFAPIFSYQYAYIAGGQEE----VKVVY 226 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 L + ++ A ++ D ++ T G H+ DL ++ I +GS Sbjct: 227 ESMLHEQTQEALLAQHQQ----------RDLQAQYTTAGIHKDDLRLEIQGYPIK-KYGS 275 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFM 347 G+QK +L+ + L+ L+ +T G PI+LLD+I LD+ + L ++VT + Q+F+ Sbjct: 276 QGQQKSLLIALKLSQFELLKHTLGITPIVLLDDIFDKLDDTRVAQLVQLVTQNHFGQLFI 335 Query: 348 TGT 350 T T Sbjct: 336 TDT 338 >gi|300781941|ref|YP_003762232.1| DNA replication and repair protein RecF [Amycolatopsis mediterranei U32] gi|299791455|gb|ADJ41830.1| DNA replication and repair protein RecF [Amycolatopsis mediterranei U32] Length = 384 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 99/377 (26%), Positives = 158/377 (41%), Gaps = 29/377 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +++FR++ L + T+ VG NG GKTN+LEAI +++ R A+ A + R Sbjct: 3 LRHLQVTDFRSWPQADLALEPGPTVLVGQNGRGKTNLLEAIGYVATLGSHRVATDAPLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G RV + +++++LE R+ R V R D L LR Sbjct: 63 HGC---ERALVRVAVVNDDRELTVELEITAGRANRARVNRGAVGRPRDVLGI-LRTVLFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------EGYFDS 180 P + G ERRRFLD ++ PR+ D+E++++ RN LL G D Sbjct: 119 PEDLALVRGDPGERRRFLDELLVLRAPRYAGVRADYEKVLKQRNALLKTAGKRRTGREDP 178 Query: 181 SWCSSIE--------AQMAELGVKINI--------ARVEMINALSSLIMEYVQKENFPHI 224 S++E A L ++N+ A M A S + + + Sbjct: 179 YALSTLEVWDDHLAEAGAELLAARLNLVADLAPHAASAYMGVAPDSRPAKITYRSSLGAA 238 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 G DG+ Q LK+ K L + RK + +L+GPHR +L + +A Sbjct: 239 MPETYGVPDGERAQPEV-LKDVLLKALGEARKAELERGISLVGPHRDELEL-ILGEAPAK 296 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 + S GE + + L L+ G P+LLLD++ A LD +R L + Sbjct: 297 GYASHGESWSFALALRLGSYELLRAEAG-EPVLLLDDVFAELDRKRRARLAEVAASAEQV 355 Query: 345 IFMTGTDKSVFDSLNET 361 + D+ V L T Sbjct: 356 LVTAAVDEDVPGELAGT 372 >gi|312126265|ref|YP_003991139.1| DNA replication and repair protein recf [Caldicellulosiruptor hydrothermalis 108] gi|311776284|gb|ADQ05770.1| DNA replication and repair protein RecF [Caldicellulosiruptor hydrothermalis 108] Length = 353 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 93/349 (26%), Positives = 157/349 (44%), Gaps = 23/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + I FR Y F + + VG+N GKT++LEA+ F G+ F+ DV Sbjct: 1 MKIKNIYIENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCICGKSFKS---RDV 57 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 I +F S + ++E + +I + D+++ + + IND I + EL + Sbjct: 58 DAI---NFDSYYFKLEMSAEVGNIEYNVFCYVDKALDKRIMINDKKINRLSELISLFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ RRRFLD V + P + +++R + RN L + Y Sbjct: 115 FFEPDTTRLIKHQPKLRRRFLDMEVAKLYPYMTKVYSEYQRALHSRNAFL-KSYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA- 242 + Q+++LG I R E+I+ LS ++ + L+ K+ S A Sbjct: 174 DVYDVQISQLGFLIFQKRQEVIDRLS------IEAQKIFSYVFENKSLLELKYMPSINAS 227 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +EEY K++ D T G HR D + D I S G+ K+ V + L+ Sbjct: 228 SEEEYYKEMKKHLVKDLSLGYTTKGIHRDDFEI-LIDGKPAIDFASEGQIKLAAVSVVLS 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 A L + P+L+LD++ + LD+ KR L + ++ S F+T + Sbjct: 287 SALLYTE-----PVLILDDVFSELDKFKRRNLIKFLSQYQS--FVTSAE 328 >gi|210634750|ref|ZP_03298278.1| hypothetical protein COLSTE_02205 [Collinsella stercoris DSM 13279] gi|210158690|gb|EEA89661.1| hypothetical protein COLSTE_02205 [Collinsella stercoris DSM 13279] Length = 361 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 167/355 (47%), Gaps = 27/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ ++R++A L D T+ VG N VGKTN++EA+ L+ G FR+ S +++ R G+ Sbjct: 8 LSVVQYRSFAEYALRLDPHVTVLVGRNAVGKTNLVEALQLLTAGSSFRKPSSSELLRQGA 67 Query: 70 PSFFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 P+ + +EG ++ ++L TR+ + + V+ V+ Sbjct: 68 PAGRARLL-LEGEGRRLEMGLELAEGKRSFTRNGKRTTASGVRGVLPSVL---------- 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + +D + S RR LD ++ ++ + + +ER + RN LL + + Sbjct: 117 FCPDDLDMVKRSASA-RRAALDSFGVQLNDQYAKLLSTYERTVEQRNNLLRD-CPPADLL 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFC 241 + +A G ++ + R ++ + +E V + PH ++ L G+ Sbjct: 175 EVWDESLAVTGAQLLMHRRALLARIRGHFVE-VYRAIAPHETPDVAYESTL-GELGDERE 232 Query: 242 ALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A+ E++ ++L R+ D + R TL+GPHR D I D GS G+Q+ +++ Sbjct: 233 AIAEQFRRELL-ARRADELRRGMTLVGPHR-DEIAFTIDGRAARDFGSQGQQRSIVLAWK 290 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 +A ++ + G P+LLLD++ + LD +R A+ V D Q +T T+ F Sbjct: 291 IAEVQVTRDILGRPPLLLLDDVMSELDASRREAIMGFVAD-DIQTVITTTNLGYF 344 >gi|333025716|ref|ZP_08453780.1| putative recombination protein F [Streptomyces sp. Tu6071] gi|332745568|gb|EGJ76009.1| putative recombination protein F [Streptomyces sp. Tu6071] Length = 413 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 101/375 (26%), Positives = 158/375 (42%), Gaps = 45/375 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 27 MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 86 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F R +G ++LE R+ R +R D L +R Sbjct: 87 VRAGA---ERAFVRAAVTQGERSQLVELEINPGRANRARINRSSQVRPRDVLGI-VRTVL 142 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 143 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 202 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHI---KLSLT 229 D S + +A G ++ R ++I AL L+ E + P + + S Sbjct: 203 RTLDLSTLDIWDQHLARAGAELLAQRTDLIAALQPLVDKSYEQLAPGGGPALLEYRPSAP 262 Query: 230 GFLDGK---FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 G G+ + Q AL E RK + TL+GPHR DL++ D + Sbjct: 263 GTAQGREEFYAQLLAALGEV--------RKQEIERGVTLVGPHRDDLLLKLGDLPAK-GY 313 Query: 287 GSTGEQKVVLVGIFLAHARLI-------------SNTTGFAPILLLDEISAHLDEDKRNA 333 S GE + + LA L+ P+L+LD++ A LD +R+ Sbjct: 314 ASHGESWSYALALRLASYDLLRAEPWAPQTAPGPEGQRSGEPVLILDDVFAELDARRRDR 373 Query: 334 LFRIVTDIGSQIFMT 348 L V G Q+ +T Sbjct: 374 LAEHVAP-GEQVLVT 387 >gi|296328804|ref|ZP_06871318.1| DNA replication and repair protein RecF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154139|gb|EFG94943.1| DNA replication and repair protein RecF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 369 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/353 (22%), Positives = 164/353 (46%), Gaps = 14/353 (3%) Query: 7 IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K NIS FRN + + + +F G N GKT++LEAI + S G F+ +++ Sbjct: 1 MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 + F S+ + + +A+ I + ++ + N I D K + I Sbjct: 61 IKYNFDEFISS---ISYQDYIANNKISVRFKNIAGAKKEFFFNKKRISQTDFYGK-INII 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 +P + +G RR F D + ID + + ++++L++ RN+ L E +S Sbjct: 117 AYIPEDIILINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNSEEF 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFC 241 + E + + I R+E + +LS ++ ++Y + N + L LD + Sbjct: 177 AIYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKVTIE 236 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E +++ + + + +L+GPH+ D +++ + I+ S GE+K ++ + Sbjct: 237 MIQESLKREISQKKYQEDRYKFSLVGPHKDDYKFLLNGHEAKIS---ASQGEKKSIIFSL 293 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+ +I P++++D+I+++ DED+R ++ Q+ ++ TDK Sbjct: 294 KLSEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346 >gi|240172093|ref|ZP_04750752.1| recombination protein F [Mycobacterium kansasii ATCC 12478] Length = 388 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 94/369 (25%), Positives = 163/369 (44%), Gaps = 39/369 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A L T+FVG NG GKTN++EA+ + S R + A + R Sbjct: 3 VRHLGLRDFRSWAHADLELHPGRTVFVGPNGFGKTNLIEALWYSSTLGSHRVGTDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST +G E ++ LE R+ + ++N +R E+ LR Sbjct: 63 AGADRAVISTIVVSDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVVGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G +RRR+LD + P D+++++R R LL Sbjct: 118 APEDLALVRGDPADRRRYLDDLATVRRPAVAAVRADYDKVLRQRTALLKSVAGARYRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLT 229 G D+ ++++AE G ++ AR+++++ L+ + + Q + + S+T Sbjct: 178 GVLDT--LDVWDSRLAEHGAELMAARMDLVSQLAPEVAKAYQLLAPESRTASIEYRASMT 235 Query: 230 GFL------DGKFDQSFCALKEEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKA 281 + DG D+ + E + D+ R L+GPHR DL + D+ Sbjct: 236 SVVPGSDEPDGTADRGYL----EARLLAALAARRDAEVERGVCLVGPHRDDLELRLGDQP 291 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 S GE + V + LA L+ G P+LLLD++ A LD +R AL V + Sbjct: 292 AK-GFASHGESWSMAVALRLAAYELL-RVEGSDPVLLLDDVFAELDTRRRRALAS-VAES 348 Query: 342 GSQIFMTGT 350 Q+ +T Sbjct: 349 AEQVVVTAA 357 >gi|218261320|ref|ZP_03476188.1| hypothetical protein PRABACTJOHN_01854 [Parabacteroides johnsonii DSM 18315] gi|218224101|gb|EEC96751.1| hypothetical protein PRABACTJOHN_01854 [Parabacteroides johnsonii DSM 18315] Length = 367 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 161/365 (44%), Gaps = 38/365 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+I ++N + F F G+NG+GKTN+L+A+ +LS + + Sbjct: 3 LKKLSILNYKNILQAEVSFSPDINCFFGNNGMGKTNLLDAVHYLSFCK----------SH 52 Query: 67 IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKH 119 I +P + + ++G D E R++ ++ + D+L++H Sbjct: 53 INTPDSQLINNGQDMCVLQGNYD----YEGREEEIFCAIRRRQRKQFKRNKKEYDKLSEH 108 Query: 120 LRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 + + LV P+ + G S ERRRFLD ++ D + +I + + + RN LL + Sbjct: 109 IGLLPLVMVSPADSELIQGGSEERRRFLDVIISQQDKPYLHALIQYNKALLQRNSLLKDQ 168 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDG 234 D+S +E Q+ G + R ++N + EY Q + + L L+ Sbjct: 169 CTDASLYEVLEMQLDMYGRMVYEKRQMLVNDFIPIFNEYYQTICRSTEQVGLRYISQLE- 227 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 K + L R+ D + T G H+ +L + D I GS G+ K Sbjct: 228 ---------KGNLSDMLAANRERDRILGYTSTGIHKDELEMTLNDYLIRRV-GSQGQNKT 277 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353 L+ + LA +S PILLLD+I LD D+ + ++V+ D QIF+T T++ Sbjct: 278 YLIALKLAQYVFLSRRGQACPILLLDDIFDKLDADRVEQIVKLVSGDQFGQIFITDTNRK 337 Query: 354 VFDSL 358 D++ Sbjct: 338 YLDAI 342 >gi|19705418|ref|NP_602913.1| RECF protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713411|gb|AAL94212.1| RECF protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 369 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/353 (22%), Positives = 164/353 (46%), Gaps = 14/353 (3%) Query: 7 IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K NIS FRN + + + +F G N GKT++LEAI + S G F+ +++ Sbjct: 1 MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 + F S+ + + +A+ I + ++ + N I D K + I Sbjct: 61 IKYNFDEFISS---ISYQDYIANNKISVRFKNIAGAKKEFFFNKKRISQTDFYGK-INII 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 +P + +G RR F D + ID + + ++++L++ RN+ L E +S Sbjct: 117 AYIPEDIILINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNSEEF 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFC 241 + E + + I R+E + +LS ++ ++Y + N + L LD + Sbjct: 177 AIYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKVTIE 236 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E +++ + + + +L+GPH+ D +++ + I+ S GE+K ++ + Sbjct: 237 MIQESLKREISQKKYQEDKYKFSLVGPHKDDYKFLLNGHEAKIS---ASQGEKKSIIFSL 293 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+ +I P++++D+I+++ DED+R ++ Q+ ++ TDK Sbjct: 294 KLSEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346 >gi|229530200|ref|ZP_04419589.1| DNA recombination and repair protein RecF [Vibrio cholerae 12129(1)] gi|229332333|gb|EEN97820.1| DNA recombination and repair protein RecF [Vibrio cholerae 12129(1)] Length = 363 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 169/366 (46%), Gaps = 20/366 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F R+ +D + + + + D S ++I + + +L + L + + Sbjct: 66 SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184 P + + +RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R +N L S + E + + P + L + + DQ + ++ Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ ++ D T GP+++DL + + S G+ K+++ + +A Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351 Query: 364 FMRISN 369 +++ Sbjct: 352 TFHVAH 357 >gi|328951554|ref|YP_004368889.1| DNA replication and repair protein recF [Marinithermus hydrothermalis DSM 14884] gi|328451878|gb|AEB12779.1| DNA replication and repair protein recF [Marinithermus hydrothermalis DSM 14884] Length = 343 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 95/341 (27%), Positives = 154/341 (45%), Gaps = 25/341 (7%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN S L VG N GKTN+LEA+ +L+ G G R + ++ R G Sbjct: 11 FRNLRSSELTLAGGPLAVVGANAQGKTNLLEAL-YLALG-GEVRGALSERVRFGEREA-Q 67 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 FA E G ++ E R + R +++N+ + EL ++ W+ P + Sbjct: 68 LFAEAETELG----RVRFEHRFGPAGREVKVNEAPA-SLRELAEYPGAVWVRPEDTALVL 122 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 G ERRR++D ++ R+R + +ER +R RN LL +G + ++ ++A G Sbjct: 123 GGPEERRRWMDLLLTRFSARYRSLLSAYERALRQRNALL-KGQGRLAGLAAWNQKLATYG 181 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSL--TGFLDGKFDQSFCALKEEYAKKLF 252 +I R ++ L L E ++ ++L+L T +G + L+EE + Sbjct: 182 SEILQLRRRLLTRLEPLAQEAYRELAPGTLELALRETVTPEGYLEALETHLQEELERGA- 240 Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312 TL GPHR DL + + S GE + + + + LA RL+ G Sbjct: 241 -----------TLFGPHRDDLKL-LLNGLEAPQFASRGEARAIALALRLAEHRLLWTHHG 288 Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 AP+LL+D+ +A LD +R AL + Q +TGTD Sbjct: 289 EAPVLLVDDFTAELDARRRTALLAYAQAL-PQAILTGTDPP 328 >gi|145218825|ref|YP_001129534.1| DNA replication and repair protein RecF [Prosthecochloris vibrioformis DSM 265] gi|189039632|sp|A4SC23|RECF_PROVI RecName: Full=DNA replication and repair protein recF gi|145204989|gb|ABP36032.1| DNA replication and repair protein RecF [Chlorobium phaeovibrioides DSM 265] Length = 371 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 91/357 (25%), Positives = 153/357 (42%), Gaps = 19/357 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + FRN+ S + + G NG GKT+ILE I + + +GF A+ + Sbjct: 1 MRLRSIQFENFRNHRSFSFEPEDGINLIYGQNGSGKTSILEGIHYCALTKGFVSAADGEC 60 Query: 65 TRIGSPSFFST--FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + F T F G+E +S E S + LQI+ ++ + Sbjct: 61 LSFSAGYFLLTALFESSSGIETAVRLSYTKE-----SGKKLQIDGNELKPFSLHIGSIPC 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYF 178 P I SG ERRRFLD V D R+ ++ + RL++ RN LL + Sbjct: 116 ISFSPPEIVIVSGPPGERRRFLDNAVCQSDRRYLDNLLIYRRLLQQRNALLQQLSQSPGK 175 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMI---NALSSLIMEYVQKENFPHIKL-SLTGFLDG 234 D S +A + RV + + L+ + P I+ S G L Sbjct: 176 DRSMLQLWSENLASSAASVTAGRVRFLAEFHPFVELLHRDLSGGQMPSIEYRSTIGRLLE 235 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 +S L+E + ++ + + + + +TL GPHR +LI D + + S G+Q+ Sbjct: 236 PVPES--ELRERFLQRFQENEQQEILRGQTLSGPHRDELIF-LSDGRESKRYSSQGQQRT 292 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 L+ + LA + + G PI LLD+I + LD + A+ I+ G Q ++ D Sbjct: 293 FLISLKLALFQYFNEKIGETPICLLDDIFSELDGKRTAAVLDILEGCG-QTLISSAD 348 >gi|332533698|ref|ZP_08409557.1| DNA recombination and repair protein RecF [Pseudoalteromonas haloplanktis ANT/505] gi|332036862|gb|EGI73323.1| DNA recombination and repair protein RecF [Pseudoalteromonas haloplanktis ANT/505] Length = 364 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 19/344 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRN +L L I G+NG GKT++LEAI +LS G+ FR + + Sbjct: 1 MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTPKHKSI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 F + G + + D+SI + ++ L+I R + EL + + + Sbjct: 61 IAHQQEQFV-----IHGRKTIHDLSIPIGISKTQTGETNLKIQGKASRRISELAQLMPVQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDS 180 + P +F G ERR+FLD +F ++ F ++++ RN LL + YFD Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKTKPKNYFDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + L +IN R+ I+ + + E L+L L+ F + Sbjct: 176 --IKFWDKEFVRLAEEINKLRLAYISRFKQQFFDKMCAE------LTLVRDLEMTFSAGW 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E A L + D+ T GPH++D ++ S G+ K++L + Sbjct: 228 KE-TESLADALEQNFERDARQGFTSKGPHKADFSFSVAGNSVENTF-SRGQLKLLLYALK 285 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 + LI + T ILL+D++ + L ED + + +++ SQ Sbjct: 286 VTQNSLIESETDKQSILLIDDLPSELGEDTKEKVGQLLAHCSSQ 329 >gi|226952832|ref|ZP_03823296.1| DNA replication and repair protein RecF [Acinetobacter sp. ATCC 27244] gi|294648700|ref|ZP_06726160.1| DNA replication and repair family protein [Acinetobacter haemolyticus ATCC 19194] gi|226836453|gb|EEH68836.1| DNA replication and repair protein RecF [Acinetobacter sp. ATCC 27244] gi|292825375|gb|EFF84118.1| DNA replication and repair family protein [Acinetobacter haemolyticus ATCC 19194] Length = 364 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 28/364 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASY 61 ++I LNI RN ++ L IF G NG GKT+ILE+I L+ GR FR Y Sbjct: 1 MQITRLNIERVRNLKTVALTELQPFNIFYGANGSGKTSILESIHLLATGRSFRTHIPKHY 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + F + GM LA + ++IN I +L K L Sbjct: 61 IQYEADDAIVFAQSVHERMGMRKLAS-----------GEQLIKINGDTIATQGQLAKRLP 109 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDS 180 + L P I + RR+ LD ++F ++P + R ++ RN LL T Sbjct: 110 LQHLDPQSTDIIDQGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNSLLKTRRNLTL 169 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + +++ G ++ RV ++ + E + K+ P I++ L +Q Sbjct: 170 ADLEPWNKMLSDYGEILHSQRVGILEQWNLFFKEDL-KQLLPDIEIELEYHAGFHTEQGL 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI--TIAHG-STGEQKVVLV 297 + L + D R T GPHR+DL + A+ AH S G++K++++ Sbjct: 229 L-------QDLVQQHQKDLDRRYTEYGPHRADLRLKTKGDAMRSDAAHVLSRGQKKLLIM 281 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFD 356 + L+ ++ + + ++LLD+++A LD + L ++ +GSQ+FMT D SV Sbjct: 282 ALKLSQIAML-HASNKETVVLLDDLTAELDLAAQQRLMERLSQLGSQVFMTTLDHTSVLK 340 Query: 357 SLNE 360 L++ Sbjct: 341 HLHD 344 >gi|126651998|ref|ZP_01724190.1| recombination protein F [Bacillus sp. B14905] gi|126591267|gb|EAZ85376.1| recombination protein F [Bacillus sp. B14905] Length = 371 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 85/369 (23%), Positives = 166/369 (44%), Gaps = 47/369 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + ++ +RNY +L L F + +F+G+N GKTN++E+I L+ + R + ++ Sbjct: 1 MHIEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + S + ++EG + +E + + +IN + + + + Sbjct: 61 IR-----WDSDYGKIEGAVQKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRRF+D + I P + ++ F+++++ RN L Sbjct: 116 FAPEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMN-------- 167 Query: 185 SIEAQMAELGVKINIARVEMINALSSLI------MEYVQKENFP-HIKLSLTGFLDGKFD 237 + + V + + I+A + +I M+ +Q+ P H G GK Sbjct: 168 --QGKSMSNDVMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIH-----AGISQGKET 220 Query: 238 -----QSFCALKEEYA---------KKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKA 281 ++ +++E++ +KL + R+ + TL+GPHR DL +V+ D Sbjct: 221 LVIKYRTVAGIEKEHSSSEIENTLHQKLMEAREREFDRGVTLVGPHRDDLQFLVNGYD-- 278 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 +GS G+Q+ + + LA LI T PILLLD++ + LD+ +++ L + Sbjct: 279 -VQTYGSQGQQRTTALSLKLAEIELIKQETNETPILLLDDVLSELDDYRQSHLLNTIQG- 336 Query: 342 GSQIFMTGT 350 Q F+T T Sbjct: 337 EVQTFVTTT 345 >gi|227543722|ref|ZP_03973771.1| recombination protein F [Lactobacillus reuteri CF48-3A] gi|300908787|ref|ZP_07126250.1| recombination protein F [Lactobacillus reuteri SD2112] gi|77745333|gb|ABB02567.1| recombinational DNA repair ATPase [Lactobacillus reuteri] gi|227186290|gb|EEI66361.1| recombination protein F [Lactobacillus reuteri CF48-3A] gi|300894194|gb|EFK87552.1| recombination protein F [Lactobacillus reuteri SD2112] Length = 374 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 149/352 (42%), Gaps = 17/352 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRNY L + F+ + +G N GKTN+LEAI LS + R ++ ++ Sbjct: 6 LHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHELINWQE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S A + G + I LE + + ++N + + + L P Sbjct: 66 KS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAILFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185 + G RR F+DR + ++ + L+R +N+ L + + D Sbjct: 121 LSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYKQQTDRVLLGV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + Q+A G ++ IAR + L + Q+ + L L K + A E Sbjct: 181 LSDQLAAFGAEVIIARQYFLKHLEGWAADLHQEISLNKESLQLEYVNQLKVNDETTA--E 238 Query: 246 EYAKKLF----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 E + LF D + + T+ GPHR D+ DK + A GS G+Q+ + + L Sbjct: 239 EAYQALFKLYQDNEQREIEQGTTIYGPHRDDIRFLVNDKNVQ-AFGSQGQQRTTALSVKL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 A L+ TG P+LLLD++ + LD ++ L + + Q F+T T S Sbjct: 298 AEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQN-KVQTFLTTTSLS 348 >gi|255023617|ref|ZP_05295603.1| recombination protein F [Listeria monocytogenes FSL J1-208] Length = 317 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/330 (24%), Positives = 141/330 (42%), Gaps = 45/330 (13%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG S+ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190 G RRRFL+ + + P + + +++R+++ RN+ L + D + Q Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249 A++ + + R + I L + + + + LK EY A Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228 Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +G +KM+S+ +R TLIGPHR D + Y + GS G+Q Sbjct: 229 VTLNGDNPDVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEI 322 + + I LA LI TG P+LLLD++ Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDV 317 >gi|325285177|ref|YP_004260967.1| DNA replication and repair protein recF [Cellulophaga lytica DSM 7489] gi|324320631|gb|ADY28096.1| DNA replication and repair protein recF [Cellulophaga lytica DSM 7489] Length = 359 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 99/383 (25%), Positives = 170/383 (44%), Gaps = 48/383 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N+ S FDA+ FVG NGVGKTNIL+AI LS G+ + + + Sbjct: 3 LKKLSLVNYKNFDSKEFDFDAKINCFVGSNGVGKTNILDAIYHLSFGKSYFNPIASQNIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121 G F V+G+ D R+++ + L+ + + D+ + H+ Sbjct: 63 HGEDFFV-----VDGLFFKND-------REEKIICSLKKGAKKVIKKNGKAYDKFSDHIG 110 Query: 122 ISWLV---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---- 173 LV P+ D I G S RR+F+D ++ + + ++ + +++ RN LL Sbjct: 111 FLPLVIISPADRDLILEG-SDTRRKFIDGVISQSNKEYLTALLKYNKILLQRNSLLKYFA 169 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 FD + S Q+ E G I+ RV +N E P K Sbjct: 170 VNHTFDKTTLSVYNEQLQEYGTIIHKERVAFLN------------EFIPIFKEQYAAISG 217 Query: 234 GKFDQSFC----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 GK D + L ++ + + + D + T +G H+ DL + + + GS Sbjct: 218 GKEDVTITYNSKLLDKDLLQLFNESLEKDRAVQYTTVGTHKDDLSFEINNYPVK-KFGSQ 276 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMT 348 G+QK L+ + LA I PILLLD+I LDE++ + +V D QIF++ Sbjct: 277 GQQKSFLIALKLAQFNFIKAQAKTTPILLLDDIFDKLDENRVAQIVSLVDDDNFGQIFIS 336 Query: 349 GTD----KSVFDSLNETAKFMRI 367 T ++V +++++ K +I Sbjct: 337 DTHADRTENVVKNIHQSYKIFKI 359 >gi|302520519|ref|ZP_07272861.1| recombination protein F [Streptomyces sp. SPB78] gi|318058968|ref|ZP_07977691.1| recombination protein F [Streptomyces sp. SA3_actG] gi|302429414|gb|EFL01230.1| recombination protein F [Streptomyces sp. SPB78] Length = 387 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 101/375 (26%), Positives = 158/375 (42%), Gaps = 45/375 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F R +G ++LE R+ R +R D L +R Sbjct: 61 VRAGA---ERAFVRAAVTQGERSQLVELEINPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHI---KLSLT 229 D S + +A G ++ R ++I AL L+ E + P + + S Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLARRTDLIAALQPLVDKTYEQLAPGGGPALLEYRPSAP 236 Query: 230 GFLDGK---FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 G G+ + Q AL E RK + TL+GPHR DL++ D + Sbjct: 237 GTAQGREEFYAQLLAALGEV--------RKQEIERGVTLVGPHRDDLLLKLGDLPAK-GY 287 Query: 287 GSTGEQKVVLVGIFLAHARLI-------------SNTTGFAPILLLDEISAHLDEDKRNA 333 S GE + + LA L+ P+L+LD++ A LD +R+ Sbjct: 288 ASHGESWSYALALRLASYDLLRAEPWAPQTAPGPEGQRSGEPVLILDDVFAELDARRRDR 347 Query: 334 LFRIVTDIGSQIFMT 348 L V G Q+ +T Sbjct: 348 LAEHVAS-GEQVLVT 361 >gi|296127873|ref|YP_003635123.1| DNA replication and repair protein RecF [Cellulomonas flavigena DSM 20109] gi|296019688|gb|ADG72924.1| DNA replication and repair protein RecF [Cellulomonas flavigena DSM 20109] Length = 398 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 96/385 (24%), Positives = 161/385 (41%), Gaps = 59/385 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++++FR+Y + L + T VG NG GKTN++EA+ +++ R S A + R Sbjct: 3 VAHLSLTDFRSYPQVELPLEPGITALVGPNGQGKTNLVEAVGYVATLGSHRVPSDAALVR 62 Query: 67 IGSPSFF----------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 G+ ST VE G A+ S R+ L I Sbjct: 63 AGTSRAVVRAKVVREERSTLVEVEITPGKANRSRVNGGSPGRARDVLGI----------- 111 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR------- 169 LR P + G RRRFLD ++ + PR + D+ER++R R Sbjct: 112 ---LRTVLFAPEDLALVKGDPDGRRRFLDELLVQLTPRIAGVLGDYERVLRQRSALLKSA 168 Query: 170 -NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 D +A++A+ G ++ +AR ++ AL + ++ + +L L Sbjct: 169 AAATRARAGADLRTLDVWDAKLAQTGAQVVVARQALVRALQPRAADAYRQVSAGQGELVL 228 Query: 229 T--GFLDGKFDQSFCAL--KEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIV 275 T LD D++ AL + +L + R +D+M R L+GPHR DL++ Sbjct: 229 TYRSSLDAALDEAPDALTGAPDVGVELVEARLLDAMGRLRGKEIERGVCLVGPHRDDLVL 288 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA------------PILLLDEIS 323 + + S GE V + + LA L+++ A P+L+LD++ Sbjct: 289 ELGGLPAK-GYASHGESWSVALALRLASYGLLTHGVDDAGAWSADWGPDGEPVLILDDVF 347 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMT 348 A LD +R L +V Q+ +T Sbjct: 348 AELDARRRERLAELVAP-ARQVLVT 371 >gi|169825625|ref|YP_001695783.1| hypothetical protein Bsph_0007 [Lysinibacillus sphaericus C3-41] gi|226737813|sp|B1HS35|RECF_LYSSC RecName: Full=DNA replication and repair protein recF gi|168990113|gb|ACA37653.1| RecF [Lysinibacillus sphaericus C3-41] Length = 371 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 85/369 (23%), Positives = 166/369 (44%), Gaps = 47/369 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + ++ +RNY +L L F + +F+G+N GKTN++E+I L+ + R + ++ Sbjct: 1 MHIEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + S + ++EG + +E + + +IN + + + + Sbjct: 61 IR-----WDSDYGKIEGAVQKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRRF+D + I P + ++ F+++++ RN L Sbjct: 116 FAPEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMN-------- 167 Query: 185 SIEAQMAELGVKINIARVEMINALSSLI------MEYVQKENFP-HIKLSLTGFLDGKFD 237 + + V + + I+A + +I M+ +Q+ P H G GK Sbjct: 168 --QGKSMSNDVMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIH-----AGISQGKET 220 Query: 238 -----QSFCALKEEYA---------KKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKA 281 ++ +++E++ +KL + R+ + TL+GPHR DL +V+ D Sbjct: 221 LIIKYRTVAGIEKEHSSSEIENTLHQKLMEAREREFDRGVTLVGPHRDDLQFLVNGYD-- 278 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 +GS G+Q+ + + LA LI T PILLLD++ + LD+ +++ L + Sbjct: 279 -VQTYGSQGQQRTTALSLKLAEIELIKQETNETPILLLDDVLSELDDYRQSHLLNTIQG- 336 Query: 342 GSQIFMTGT 350 Q F+T T Sbjct: 337 EVQTFVTTT 345 >gi|328472402|gb|EGF43269.1| DNA replication and repair protein recF [Lactobacillus rhamnosus MTCC 5462] Length = 341 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 148/326 (45%), Gaps = 23/326 (7%) Query: 36 NGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETR 95 N GKTN+LEAI L+ R R + ++ R GS FARV G + +LE Sbjct: 6 NAQGKTNLLEAIYVLALARSHRTNNDKELIRFGSD-----FARVSGQISRQSGTHQLELI 60 Query: 96 DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + +I+ + + + H + P I G RRRF+D + P++ Sbjct: 61 ISHQGKRARIDRIEQSKLSQYLGHFNVILFAPEDLAIVKGSPAGRRRFIDMEFGQMSPKY 120 Query: 156 RRRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 + ++ ++ RN L + + D + + +A G ++ AR +++ +S Sbjct: 121 LYNLSQYKTFLKQRNAYLKQLKYHQAKDLVYLDVLTDSLAAFGAELITARAKLLQTMSDY 180 Query: 212 -------IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 I + +K F + + + L +Q + AL +AK+ R+++ + + Sbjct: 181 AATIQQDITKGREKLQFAY-QTQVAADLRQDSEQVYEALGALFAKQ--QSREIEQGT--S 235 Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 L+GPHR D++ DK + GS G+Q+ + + LA L+ + TG P+LLLD++ + Sbjct: 236 LVGPHRDDVLFIVNDKDVA-NFGSQGQQRTTALAVKLAEIDLMKDQTGEYPVLLLDDVLS 294 Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGT 350 LD ++ L + + Q F+T T Sbjct: 295 ELDAIRQTHLLKAI-QTKVQTFLTTT 319 >gi|86142885|ref|ZP_01061307.1| DNA replication and repair protein RecF, ABC family ATPase [Leeuwenhoekiella blandensis MED217] gi|85830330|gb|EAQ48789.1| DNA replication and repair protein RecF, ABC family ATPase [Leeuwenhoekiella blandensis MED217] Length = 359 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 174/382 (45%), Gaps = 46/382 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N+ S+ DA+ FVG+NGVGKTN+L+A+ LS G+ SY + Sbjct: 3 LKALSLINYKNFESISFDLDAKINCFVGNNGVGKTNVLDAVYHLSFGK-----SYFNPIT 57 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISWL 125 + + + F ++G+ D K+ R + ++ N ++ + + H+ L Sbjct: 58 TQNINHDADFFVIDGIYDKNDREEKVIVSAKRGQKKVIKRNG---KIYERFSDHIGFLPL 114 Query: 126 V---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 V P+ D I G S RR+F+D ++ D + +I + +++ RN LL YF+++ Sbjct: 115 VIISPADRDLIIEG-SETRRKFMDGVISQSDKAYLDTLIKYNKILSQRNALLK--YFNAN 171 Query: 182 WCSSIEA------QMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTG 230 + + QM ELG + R + + + + + KE +KL Sbjct: 172 HTFNPDTLAIYNEQMHELGTSLYKKRKQFLEDFTPIFKKRYAAISGDKE---EVKLKYKS 228 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 L+ D L EE KK D + T +G HR DL I GS G Sbjct: 229 QLN---DAPLNQLFEENLKK-------DRALQYTSVGTHRDDLNFKIESHPIK-KFGSQG 277 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTG 349 +QK L+ + LA I + PILLLD+I LDE + + +V D Q+F++ Sbjct: 278 QQKSYLIALKLAQFDFIKAQSNTTPILLLDDIFDKLDESRVTQIIDLVNDDNFGQLFISD 337 Query: 350 TD----KSVFDSLNETAKFMRI 367 T +++ +++T K ++ Sbjct: 338 THADRTEAIVKEIHQTYKLFKL 359 >gi|193063850|ref|ZP_03044937.1| DNA replication and repair protein RecF [Escherichia coli E22] gi|194428115|ref|ZP_03060659.1| DNA replication and repair protein RecF [Escherichia coli B171] gi|209921177|ref|YP_002295261.1| recombination protein F [Escherichia coli SE11] gi|260846515|ref|YP_003224293.1| gap repair protein RecF [Escherichia coli O103:H2 str. 12009] gi|226737795|sp|B6I3T3|RECF_ECOSE RecName: Full=DNA replication and repair protein recF gi|192930565|gb|EDV83172.1| DNA replication and repair protein RecF [Escherichia coli E22] gi|194413873|gb|EDX30151.1| DNA replication and repair protein RecF [Escherichia coli B171] gi|209914436|dbj|BAG79510.1| DNA replication and repair protein RecF [Escherichia coli SE11] gi|257761662|dbj|BAI33159.1| gap repair protein RecF [Escherichia coli O103:H2 str. 12009] gi|323161048|gb|EFZ46967.1| DNA replication and repair protein recF [Escherichia coli E128010] gi|324018432|gb|EGB87651.1| recombination protein F [Escherichia coli MS 117-3] gi|324115948|gb|EGC09874.1| DNA replication and repair protein RecF [Escherichia coli E1167] Length = 357 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R + +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELIPLAEQISTWRAQYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|170767070|ref|ZP_02901523.1| DNA replication and repair protein RecF [Escherichia albertii TW07627] gi|170124508|gb|EDS93439.1| DNA replication and repair protein RecF [Escherichia albertii TW07627] Length = 357 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQVGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|194467406|ref|ZP_03073393.1| DNA replication and repair protein RecF [Lactobacillus reuteri 100-23] gi|194454442|gb|EDX43339.1| DNA replication and repair protein RecF [Lactobacillus reuteri 100-23] Length = 374 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 154/358 (43%), Gaps = 29/358 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRNY L + F+ + +G N GKTN+LEAI LS + R ++ ++ Sbjct: 6 LHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHELINWQE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S A + G + I LE + + ++N + + + L P Sbjct: 66 KS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAILFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185 + G RR F+DR + ++ + L+R +N+ L + + D Sbjct: 121 LSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYKQQTDRVLLGV 180 Query: 186 IEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFLDGK 235 + Q+A G ++ IAR + L SL E ++ E +K+S D Sbjct: 181 LSDQLAAFGAEVIIARQHFLKHLEGWAADLHQEISLNKESLRLEYVNQLKVS----DDTT 236 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 ++++ AL + Y D + + T+ GPHR D+ DK + A GS G+Q+ Sbjct: 237 VEEAYQALFKLYQ----DNEQREIEQGTTIYGPHRDDIRFLVNDKNVQ-AFGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA L+ TG P+LLLD++ + LD ++ L + + Q F+T T S Sbjct: 292 ALSVKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQN-KVQTFLTTTSLS 348 >gi|332884241|gb|EGK04509.1| hypothetical protein HMPREF9456_00836 [Dysgonomonas mossii DSM 22836] Length = 369 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 156/353 (44%), Gaps = 19/353 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I ++N L + F+G NG+GKTN+L+AI +LS + + R + Sbjct: 6 LSILNYKNIEQAELNLSPKINCFLGSNGMGKTNLLDAIYYLSFCKSHNNPIDSQNIRHDA 65 Query: 70 PSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 FA ++G L D + R + + + R+ D + L + + P Sbjct: 66 D-----FAVIQGWYVLGDKQEEFFCSLRRKQKKQFKRNKKEYERLSDHIG-FLPLIMVSP 119 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSI 186 S + +G S ERR+F+D + D + +I + + ++ RN LL T+ Y D + Sbjct: 120 SDTELINGGSDERRKFMDMFLSQFDKEYLHSLIRYNKALQQRNALLKTDSYIDETLFDLW 179 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + Q+ E G I R + I + + + K+ L + FD + + Sbjct: 180 DEQLIEEGKIIYSKRKDFIEKFIPIFQRFYDFICLSNEKVELR--YESHFDDA------D 231 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +A+ L R+ D + T IG H+ DL + +I GS G+ K +V + LA Sbjct: 232 FARSLKQKRERDRILGYTSIGVHKDDLDMQMDGYSIKRV-GSQGQNKTYVVALKLAQFDF 290 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 291 LRKATETTPVLLLDDIFDKLDSTRVEQIVKLVLDKDFGQIFVTDTNREHLDEI 343 >gi|81301059|ref|YP_401267.1| recombination protein F [Synechococcus elongatus PCC 7942] gi|97181064|sp|Q31KY9|RECF_SYNE7 RecName: Full=DNA replication and repair protein recF gi|81169940|gb|ABB58280.1| DNA replication and repair protein RecF [Synechococcus elongatus PCC 7942] Length = 387 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 101/367 (27%), Positives = 168/367 (45%), Gaps = 15/367 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRNY + F A TI +G+N GKTN+LEA+ S R R + D+ + G+ Sbjct: 6 LHLQHFRNYRDQTVQFQAPKTILLGENAQGKTNLLEAVELFSTLRSHRVSRDRDLVQTGA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S T A VE G + ++++ + R + +V+ R +D L + + + Sbjct: 66 ESALLT-AVVERDSG--EQQLQIQLQQQGRRRVQRDGEVLRRQLDLLGSLCSVQFSSLDL 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSSIEA 188 D + G +RR +LDR++ + P + + R++R RN LL D + + + Sbjct: 123 DLVRGG-PQQRRDWLDRLLIQLQPIYAHLQQQYGRVLRQRNALLRRAESLDLALLAPLNW 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQSFCAL 243 Q+A+LGV I R I L L + Q+E I L A Sbjct: 182 QLAQLGVHIMRRRSRAIQRLVPLAAHWHREISGQREQL--IVAYQPSVLAPDDTDEAIAW 239 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E ++ R + R +L+GPHR DL + + S G+Q+ +++ + LA Sbjct: 240 QERMLAQIEARRAAELGQRTSLVGPHRDDLNLSINGTEARL-QASQGQQRTLVLSLKLAE 298 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETA 362 LI G P+LLLD++ A LD ++ L + + Q +T T S FD S ETA Sbjct: 299 LELIEAVLGEPPLLLLDDVLAELDLRRQQQLLEAIAN-RFQTLITTTHLSAFDQSWVETA 357 Query: 363 KFMRISN 369 + + + + Sbjct: 358 QILTVQS 364 >gi|148543247|ref|YP_001270617.1| recombination protein F [Lactobacillus reuteri DSM 20016] gi|184152659|ref|YP_001841000.1| recombination protein F [Lactobacillus reuteri JCM 1112] gi|227364310|ref|ZP_03848403.1| recombination protein F [Lactobacillus reuteri MM2-3] gi|325683509|ref|ZP_08163025.1| recombination protein F [Lactobacillus reuteri MM4-1A] gi|166918724|sp|A5VHF6|RECF_LACRD RecName: Full=DNA replication and repair protein recF gi|226737809|sp|B2G4Y8|RECF_LACRJ RecName: Full=DNA replication and repair protein recF gi|148530281|gb|ABQ82280.1| DNA replication and repair protein RecF [Lactobacillus reuteri DSM 20016] gi|183224003|dbj|BAG24520.1| DNA replication and repair protein RecF [Lactobacillus reuteri JCM 1112] gi|227070623|gb|EEI08953.1| recombination protein F [Lactobacillus reuteri MM2-3] gi|324977859|gb|EGC14810.1| recombination protein F [Lactobacillus reuteri MM4-1A] Length = 374 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 154/358 (43%), Gaps = 29/358 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRNY L + F+ + +G N GKTN+LEAI LS + R ++ ++ Sbjct: 6 LHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHELINWQE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S A + G + I LE + + ++N + + + L P Sbjct: 66 KS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAILFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185 + G RR F+DR + ++ + L+R +N+ L + + D Sbjct: 121 LSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYRQQTDRVLLGV 180 Query: 186 IEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFLDGK 235 + Q+A G ++ IAR + L SL E ++ E +K+S D Sbjct: 181 LSDQLAAFGAEVIIARQHFLKHLEGWAADLHQEISLNKESLRLEYVNQLKVS----DDTT 236 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 ++++ AL + Y D + + T+ GPHR D+ DK + A GS G+Q+ Sbjct: 237 VEEAYQALFKLYQ----DNEQREIEQGTTIYGPHRDDIRFLVNDKNVQ-AFGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA L+ TG P+LLLD++ + LD ++ L + + Q F+T T S Sbjct: 292 ALSVKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQN-KVQTFLTTTSLS 348 >gi|209693645|ref|YP_002261573.1| recombination protein F [Aliivibrio salmonicida LFI1238] gi|226737766|sp|B6EP48|RECF_ALISL RecName: Full=DNA replication and repair protein recF gi|208007596|emb|CAQ77696.1| DNA replication and repair protein RecF [Aliivibrio salmonicida LFI1238] Length = 359 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 164/365 (44%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I++FRN + + +G NG GKT++LEAI L GR F+ + + R Sbjct: 6 LIINDFRNIETCDIQLSTGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIRNSC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F E E + I + + D + ++I + + +L K L + + P Sbjct: 66 DELFIHGRFTTPEQFE----LPIGINKQRDGTTE-VKIGGESGQKLAQLAKVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF ++P +RL + RN LL + Y + S+ Sbjct: 121 EGFELVTDGPKFRRAFIDWGVFHVEPAFYEAWSRVKRLTKQRNALLKTAQSYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++A L KI+ RV+ IN +S + Q P + L+ + + + + Sbjct: 179 -DLELANLAEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWERETPYA---- 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E K+ F+ D T+ GP+++DL + + S G+ K+++ + LA + Sbjct: 233 ELLKRNFE---RDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + + +Q+F++ T + + D +E +K Sbjct: 289 HLTEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDEESKM 348 Query: 365 MRISN 369 I + Sbjct: 349 FEIEH 353 >gi|114561191|ref|YP_748704.1| DNA replication and repair protein RecF [Shewanella frigidimarina NCIMB 400] gi|122301223|sp|Q08A49|RECF_SHEFN RecName: Full=DNA replication and repair protein recF gi|114332484|gb|ABI69866.1| DNA replication and repair protein RecF [Shewanella frigidimarina NCIMB 400] Length = 360 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 103/363 (28%), Positives = 167/363 (46%), Gaps = 27/363 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 +NI FRN S L + G NG GKT+ILEAI FL GR FR V Sbjct: 6 INIGSFRNITSASLQPCDGLNLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-ND 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLVP- 127 + FA + AD K+ R RS ++I+ ++ + L + L I + P Sbjct: 65 DDKLTLFAHLID----ADRDCKIGLRRHRSGEIEVKIDGEKVKRLSTLAETLPIQVITPE 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 S +F G RR+F+D F DP + ++ ++++ RN+LL Y + Sbjct: 121 SFSLLFEG-PKARRQFIDWGAFHSDPHFYQAWVNTRKVLKQRNQLLRNQSSYNQIQFWDK 179 Query: 186 IEAQMAELGVKINIARVEMINAL-SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + AE I V+ +N L +I ++ + + IK+S T D K D F L Sbjct: 180 ELVRYAEQVTDIRNQYVDSLNVLLKGIIGVFLPRID---IKVSFTRGWDSKTD--FAQLL 234 Query: 245 E-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E +Y++ L G T GPH++DL + + A S G+ K+++ + +A Sbjct: 235 ENQYSRDLAAGN--------TGSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362 +L+ I L+D++ + LD R L +++T+ G+QIF+T D +++ DSL+ Sbjct: 286 GKLLKQQLDKNSIYLVDDLPSELDAQHRQLLLQLLTETGAQIFVTAIDPQAIVDSLSSPP 345 Query: 363 KFM 365 M Sbjct: 346 NRM 348 >gi|54021967|ref|YP_116209.1| recombination protein F [Nocardia farcinica IFM 10152] gi|81680365|sp|Q5Z3Z6|RECF_NOCFA RecName: Full=DNA replication and repair protein recF gi|54013475|dbj|BAD54845.1| putative recombination and repair protein [Nocardia farcinica IFM 10152] Length = 388 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 96/347 (27%), Positives = 159/347 (45%), Gaps = 31/347 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FR++ + L T+F+G NG GKTN+LEA+ +L+ R ++ A + R Sbjct: 3 VRALSLRDFRSWEHVELELSTGRTVFLGANGNGKTNLLEAVGYLATLGSHRVSADAPLIR 62 Query: 67 IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + ARV + ++ I +E + R QIN +R E+ L+ Sbjct: 63 SG-----AQRARVGANVVNAGRELRIDVELNQGSANRA-QINRSPVRRTREILGILQTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYF----- 178 P + G ERRRFLD + A PR D++R++R R+ LL T G Sbjct: 117 FAPEDLALVRGDPGERRRFLDELCTARLPRLAGVRADYDRVLRQRSALLKTAGRHARSTA 176 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGK 235 D S + +A + R+ +++ L + E + E+ P + +L G+ Sbjct: 177 DLSTLDVWDGHLAGHAAVLVAQRLRLVHDLFPYLAEAYRSLAPESRPAAIGYRSAYLPGE 236 Query: 236 F--------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 F D AL+E ++L R+ + L+GPHR +L + D T A G Sbjct: 237 FLDPARAPRDDDAAALEEIILRELAAARRKELERGVCLVGPHRDELELMLGD---TPAKG 293 Query: 288 --STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 S GE + + LA L+ +T+ P+LLLD++ A LD +R Sbjct: 294 FASHGESWSFALALRLASFDLLRSTSA-EPVLLLDDVFAELDRRRRT 339 >gi|154491038|ref|ZP_02030979.1| hypothetical protein PARMER_00957 [Parabacteroides merdae ATCC 43184] gi|154088786|gb|EDN87830.1| hypothetical protein PARMER_00957 [Parabacteroides merdae ATCC 43184] Length = 367 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 161/365 (44%), Gaps = 38/365 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+I ++N + F + F G+NG+GKTN+L+A+ +LS + + Sbjct: 3 LKKLSILNYKNILQAEVSFSPEINCFFGNNGMGKTNLLDAVHYLSFCK----------SH 52 Query: 67 IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKH 119 I +P + + ++G D E R++ ++ + D+L++H Sbjct: 53 INTPDSQLINNGQDMCVLQGNYD----YEGREEEIFCAIRRRQRKQFKRNKKEYDKLSEH 108 Query: 120 LRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 + + LV P+ + G S ERRRFLD ++ D + +I + + + RN LL + Sbjct: 109 IGLLPLVMVSPADSELIQGGSEERRRFLDVIISQQDKPYLHALIQYNKALLQRNSLLKDQ 168 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDG 234 D+S +E Q+ G + R ++N + EY Q + + L L+ Sbjct: 169 CIDASLYEVLEMQLDMYGRMVYEKRQMLVNDFIPIFNEYYQTICRSTEQVGLRYISQLE- 227 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 K A L R+ D + T G H+ +L + I GS G+ K Sbjct: 228 ---------KGSLADMLAANRERDRILGYTSTGIHKDELEMTLNGHLIRRV-GSQGQNKT 277 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353 L+ + LA +S PILLLD+I LD D+ + ++V+ D QIF+T T++ Sbjct: 278 YLIALKLAQYVFLSCRGQARPILLLDDIFDKLDADRVEQIVKLVSGDQFGQIFITDTNRK 337 Query: 354 VFDSL 358 D++ Sbjct: 338 YLDAI 342 >gi|271498581|ref|YP_003331606.1| DNA replication and repair protein RecF [Dickeya dadantii Ech586] gi|270342136|gb|ACZ74901.1| DNA replication and repair protein RecF [Dickeya dadantii Ech586] Length = 361 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 154/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR A V R Sbjct: 6 LLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F R+EG+E + + D +VR I+ V EL + L I + P Sbjct: 66 AEFI-LHGRIEGLERERAVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL+R RN L + + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQ-VSHYGQLRAWDRE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L I+ R E A+++ I + P LS + F G +S +YA Sbjct: 181 LVPLAEGISRWRAEYSAAIAADIASTC-AQFLPEFSLSFS-FQRGWDKES------DYAD 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T +GPH++D + A+ S G+ K+++ + LA ++ Sbjct: 233 LLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 G + L+D+ ++ LD +R L + +Q+F++ T + + D + E K R+ Sbjct: 292 QNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGKMFRVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|56751857|ref|YP_172558.1| recombination protein F [Synechococcus elongatus PCC 6301] gi|81820589|sp|Q5N0Y2|RECF_SYNP6 RecName: Full=DNA replication and repair protein recF gi|56686816|dbj|BAD80038.1| DNA replication and repair protein RecF [Synechococcus elongatus PCC 6301] Length = 387 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 101/367 (27%), Positives = 168/367 (45%), Gaps = 15/367 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRNY + F A TI +G+N GKTN+LEA+ S R R + D+ + G+ Sbjct: 6 LHLQHFRNYRDQTVQFQAPKTILLGENAQGKTNLLEAVELFSTLRSHRVSRDRDLVQTGA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S T A VE G + ++++ + R + +V+ R +D L + + + Sbjct: 66 ESALLT-AVVERDSG--EQQLQIQLQQQGRRRVQRDGEVLRRQLDLLGSLCSVQFSSLDL 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSSIEA 188 D + G +RR +LDR++ + P + + R++R RN LL D + + + Sbjct: 123 DLVRGG-PQQRRVWLDRLLIQLQPIYAHLQQQYGRVLRQRNALLRRAESLDLALLAPLNW 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQSFCAL 243 Q+A+LGV I R I L L + Q+E I L A Sbjct: 182 QLAQLGVHIMRRRSRAIQRLVPLAAHWHREISGQREQL--IVAYQPSVLAPDDTDEAIAW 239 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E ++ R + R +L+GPHR DL + + S G+Q+ +++ + LA Sbjct: 240 QERMLAQIEARRAAELGQRTSLVGPHRDDLNLSINGTEARL-QASQGQQRTLVLSLKLAE 298 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETA 362 LI G P+LLLD++ A LD ++ L + + Q +T T S FD S ETA Sbjct: 299 LELIEAVLGEPPLLLLDDVLAELDLRRQQQLLEAIAN-RFQTLITTTHLSAFDQSWVETA 357 Query: 363 KFMRISN 369 + + + + Sbjct: 358 QILTVQS 364 >gi|203287881|ref|YP_002222896.1| DNA replication and repair protein RecF [Borrelia recurrentis A1] gi|201085101|gb|ACH94675.1| DNA replication and repair protein RecF [Borrelia recurrentis A1] Length = 355 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 90/350 (25%), Positives = 155/350 (44%), Gaps = 25/350 (7%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI+F N F+N + + FD + F G+NG GKTNIL+AI L+ F + ++ Sbjct: 4 KIEFFN---FKNIENQVINFDFDNIYFCGENGSGKTNILDAIYCLAFASSFLVNTDKELI 60 Query: 66 RIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F+ F + + G I L R+D+ +++N+ ++R D + L I Sbjct: 61 TYGEREFYLKCFYQTKEKNG----EINLSVRNDKKE--IKVNNSIVR--DRRDLILNIPA 112 Query: 125 LVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 ++ S I G M+RR F D+ + I + + + ++++ RN +L + D Sbjct: 113 IIFSNHDIDFIIGTPMKRRWFFDQAMSFISLSYLDSLRKYRKILKQRNLILKQR--DKDL 170 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-C 241 + ++I R + Y + ++ L+ K+ S C Sbjct: 171 LKIYNETFVDCALEITEMRKNFVEHFCRFFQYYCS------LIFDVSCNLEIKYFPSVTC 224 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 K+++ + L K + S TLIGPHR DL + + H STG+ +V+ + L Sbjct: 225 CSKDKFFEILCLREKDELYSETTLIGPHR-DLYEILSEHRVFTDHASTGQIRVLALIYRL 283 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + ++ +PILL D++ LD KR +F I+ SQ F T D Sbjct: 284 VQVIIFNDKFNMSPILLFDDVFLELDSIKRKKVFEILPK-DSQCFFTFLD 332 >gi|149200628|ref|ZP_01877631.1| recombination protein F [Lentisphaera araneosa HTCC2155] gi|149136277|gb|EDM24727.1| recombination protein F [Lentisphaera araneosa HTCC2155] Length = 364 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 90/356 (25%), Positives = 168/356 (47%), Gaps = 30/356 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + FRNY L L + ++F G NG GKT LEA+ FLS R R+S+ + Sbjct: 4 ISRIQLKNFRNYPELELKLEPGISVFRGLNGQGKTAFLEALGFLSLLRSI-RSSHTRHLK 62 Query: 67 IGSPSFFSTFA---RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 FFS A RV E D+S+ + R L ++ + + ++ Sbjct: 63 KWESDFFSLRACLDRVTRPE--LDMSVYYGDK-----RQLSLDGNRVPTTSDFIGVVKSV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 +P I G + RR++LD ++ + P + + + +++ ++ RN++L G Sbjct: 116 AFMPEDIEIVKGSASWRRQYLDILLSQLSPGYLQSLKHYQKALKSRNQVLKRGLNLDLEL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + E G ++ AR+ ++ L+ S ++E + K++F L+ ++ S Sbjct: 176 DVWDDILIEHGCEVLEARLSLLPRLAESVSTLVEKMLKKDF---------LLELQYKNSL 226 Query: 241 CA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV-V 295 L+ Y ++L + R+ D + + T GPHR DL+++ ++++ +GS G+ ++ Sbjct: 227 AKNATDLRSVYIERLLENRERDKLYKMTHQGPHRDDLLINLNGRSLS-NYGSEGQCRLSS 285 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 L+ A L+ ILL+D++ LDE R A + V+ G Q+F+ TD Sbjct: 286 LILKAAAVELLLPVEKPDCLILLIDDVLGELDEFSRRAFLKCVSR-GDQVFIACTD 340 >gi|260063479|ref|YP_003196559.1| DNA replication and repair protein RecF [Robiginitalea biformata HTCC2501] gi|88782923|gb|EAR14097.1| DNA replication and repair protein RecF, ABC family ATPase [Robiginitalea biformata HTCC2501] Length = 359 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 98/357 (27%), Positives = 162/357 (45%), Gaps = 40/357 (11%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ ++N+ S FD++ VG NG+GKTN+L+AI L+ G+ + R G Sbjct: 6 LSLLNYKNFESRDFSFDSKINCLVGPNGIGKTNVLDAIYHLAFGKSYFNPVTTQNIRHGE 65 Query: 70 PSFFSTFARVEGM---EGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 F ++G+ EG A+ S K R + L+ ND + D ++ H+ Sbjct: 66 DFFV-----IDGVFDKEGEAEHIVCSFKKGVR-----KVLKRND---KAYDRISDHIGTV 112 Query: 124 WLV---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TE 175 LV P+ D I G S RR+FLD ++ D + + ++D+++++ RN LL Sbjct: 113 PLVIVSPADRDLILEG-SETRRKFLDGVISQSDRGYLQDVLDYQKVLSQRNALLKYFAAN 171 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 FDS QMA LG +I+ R + + E Q + + L Sbjct: 172 HRFDSETLEVYNMQMAALGSRIHGKRAAFMEEFQPIFSEQYQAISGGDETVGLA------ 225 Query: 236 FDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 ++ A EE ++ + D + + T G H+ DL + I GS G+QK Sbjct: 226 YESQLADAPLEELLRRSLE---KDRVLQYTTQGIHKDDLSMTIEGHPIK-KFGSQGQQKS 281 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGT 350 L+G+ A + + PILLLD+I LDE++ + +V D+ QIF++ T Sbjct: 282 FLIGLKFAQFQFMKARRPGTPILLLDDIFDKLDENRVAHIISLVNRDLFGQIFISDT 338 >gi|299541762|ref|ZP_07052085.1| hypothetical protein BFZC1_22469 [Lysinibacillus fusiformis ZC1] gi|298725500|gb|EFI66141.1| hypothetical protein BFZC1_22469 [Lysinibacillus fusiformis ZC1] Length = 371 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 161/367 (43%), Gaps = 47/367 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + ++ +RNY +L L F + +F+G+N GKTN++E+I L+ + R + ++ R Sbjct: 3 IEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + S + ++EG + +E + + +IN + + + + Sbjct: 63 -----WDSDYGKIEGAVKKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + G RRRF+D + I P + ++ F+++++ RN L Sbjct: 118 PEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMN---------- 167 Query: 187 EAQMAELGVKINIARVEMINALSSLI------MEYVQKENFP-HIKLSLTGFLDGK---- 235 + + V + + I+A + +I M+ +Q+ P H G GK Sbjct: 168 QGKSMSNDVMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIH-----AGISQGKETLV 222 Query: 236 ----------FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAIT 283 + S ++ +KL + R+ + TL+GPHR DL +V+ D Sbjct: 223 IKYRTVAGIEKEHSTSEIENTLHQKLIEAREREFDRGVTLVGPHRDDLQFLVNGYD---V 279 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 +GS G+Q+ + + LA LI T PILLLD++ + LD+ +++ L + Sbjct: 280 QTYGSQGQQRTTALSLKLAEIELIKQETKETPILLLDDVLSELDDYRQSHLLNTIQG-EV 338 Query: 344 QIFMTGT 350 Q F+T T Sbjct: 339 QTFVTTT 345 >gi|326329134|ref|ZP_08195462.1| RecF protein [Nocardioidaceae bacterium Broad-1] gi|325953021|gb|EGD45033.1| RecF protein [Nocardioidaceae bacterium Broad-1] Length = 382 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 101/369 (27%), Positives = 168/369 (45%), Gaps = 39/369 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +FR+Y ++ + +A T FVG NG GKTN++EAI +LS + R A+ A + R Sbjct: 3 VSHLSLHDFRSYPNVEVPLEAGVTAFVGRNGQGKTNLVEAIDYLSRLQSHRVATDAPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ A V +G ++++E R+ + +IN + +L +R Sbjct: 63 AGAEQAVVRAAVVRDGRTA----TLEVEINAGRANKA-RINKSPLPRTRDLVGLVRTVVF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184 P + G +RRRFLD ++ PR D++R+++ RN LL T G S Sbjct: 118 SPEDLTLVKGDPSDRRRFLDDLMILRAPRLAGVRSDYDRVLKQRNSLLKTAGLARGSARE 177 Query: 185 SIEA-------QMAELGVKINIARVEMINALSSLI---MEYVQKENF---------PHIK 225 A +A +G +I R+ ++ AL + E V + P ++ Sbjct: 178 GALATLAVWDDHLATIGAEILSQRLSLVEALKPYVGKAYETVARGASRDDAEITYKPVVE 237 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITI 284 L T + A+ EE A+ R+ D + R +L+GPHR DL++ A + Sbjct: 238 LVET--TTPSVETLRQAILEELAR-----RQKDELDRGISLVGPHRDDLLLHISAGAERL 290 Query: 285 ---AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + LA L+ G PIL+LD++ A LD +R L +V D Sbjct: 291 PVKGYASHGESWSFALALRLAAYDLL-RADGDDPILILDDVFAELDSQRRVQLAELVAD- 348 Query: 342 GSQIFMTGT 350 Q+ +T Sbjct: 349 AEQVLVTAA 357 >gi|307150124|ref|YP_003885508.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7822] gi|306980352|gb|ADN12233.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7822] Length = 384 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 96/378 (25%), Positives = 178/378 (47%), Gaps = 42/378 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + + FRNY R+ FD+Q TI VG+N GK+N+LEA+ L+ + R + D+ Sbjct: 3 LKTVQLRSFRNYREQRVNFDSQKTIIVGNNAQGKSNLLEAVELLATLKSHRVSRDRDLVL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ S A +E G A++++ L R+V Q + + R +D L + + Sbjct: 63 EGAAS-GQILAALERAYGQAELALILRISGRRTVILNQ--EPLRRQMDFLGVLNAVQFSS 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------------ 174 +D + G RR ++D ++ ++P + + + ++++ RN LL Sbjct: 120 LDLD-LVRGAPDARRSWIDTLLIQLEPIYAHILSQYYQVLKQRNALLKKFRQREEDNLNP 178 Query: 175 -----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-L 228 + D S + Q+AE G ++ R ++ L+ L ++ H +S Sbjct: 179 EIIVEQLPSDISQLKLWDVQLAEAGSRVTRRRARVLERLTPLAQQW-------HSNISGK 231 Query: 229 TGFLDGKF-------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCD 279 T L+ K+ + +K+ + +K+ R + T++GPHR D+ I+++ Sbjct: 232 TEVLEIKYIPNVSWTEDDPLEVKQAFLEKIEKRRMAEQQLGTTVVGPHRDDIEFIINHTP 291 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 +GS G+Q+ +++ + LA +LI G P+LLLD++ A LD +++N L + Sbjct: 292 AKY---YGSQGQQRTLVLALKLAELQLIEEVVGEPPLLLLDDVLAELDPNRQNQLLEAIQ 348 Query: 340 DIGSQIFMTGTDKSVFDS 357 D Q +T T FDS Sbjct: 349 D-RFQTLITTTHLHSFDS 365 >gi|312869203|ref|ZP_07729375.1| DNA replication and repair protein RecF [Lactobacillus oris PB013-T2-3] gi|311095224|gb|EFQ53496.1| DNA replication and repair protein RecF [Lactobacillus oris PB013-T2-3] Length = 373 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 86/358 (24%), Positives = 149/358 (41%), Gaps = 29/358 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRNY + F + +G N GKTN+LEAI LS R R + ++ Sbjct: 6 LHLHHFRNYEDQTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTNNDRELINWQE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S F + G+ A + LE + + + ++N + + + L P Sbjct: 66 KSAF-----ISGVVQKASGRVPLELQFTKEGKRAKVNHLEQARLAQYIGQLNAILFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185 + G RRRF+D + ++ + L+R RN+ L + + D Sbjct: 121 LSLVKGAPAVRRRFMDMEFSQMSSKYLYNASQYRSLLRQRNKYLKQLKYGQQHDRVLLDV 180 Query: 186 IEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFLDGK 235 + Q+A G ++ +AR + L SL E ++ +K++ +D Sbjct: 181 LSDQLAAYGAELVVARFHFLQQLEKWAADLHYQISLNAEKLRLVYATQLKVTAETTVDDA 240 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + Q KE A+++ G T+ GP R D+ K + + GS G+Q+ Sbjct: 241 YQQLLTIFKENKAREIDQGS--------TMFGPQRDDIRFLVNGKNVQ-SFGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA L+ TG P+LLLD++ + LD ++ L + D Q F+T T S Sbjct: 292 ALAVKLAEIDLMKEQTGEYPLLLLDDVLSELDTVRQTHLLTAIQD-KVQTFLTTTSLS 348 >gi|260590842|ref|ZP_05856300.1| RecF protein [Prevotella veroralis F0319] gi|260537193|gb|EEX19810.1| RecF protein [Prevotella veroralis F0319] Length = 368 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 96/378 (25%), Positives = 160/378 (42%), Gaps = 45/378 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L A+ F+G NG GKTN+L+A+ +LS R ++V Sbjct: 1 MQLNKLSIINYKNIEAATLDLSAKLNCFIGHNGEGKTNLLDAVYYLSFCRSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS- 123 R + F +EG + D V C ++ R+S Sbjct: 61 MRHDADYFV--------LEG----DYTTDGGDKEQVYCGMKRGTKKHFKRNKKEYKRLSM 108 Query: 124 --------WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174 ++ P+ + G S ERRR +D ++ D + + + + ++ RN+LL Sbjct: 109 HIGQVPLIFVSPADATLIDGGSEERRRLMDVVISQYDTPYIEDLNRYNKALQQRNKLLKQ 168 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFL 232 E DS+ +E QMAE G I R + L+ + Q EN + L Sbjct: 169 EEEPDSTLMELLEMQMAEYGEAIYKKRAAFVEELTPVFQRIYQTICENREQVSLEYV--- 225 Query: 233 DGKFDQSFCALKEEYAKKLFD----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 S C L D R D + +L G H+ DL++ D I GS Sbjct: 226 ------SHCQ-----RGSLLDVIRRDRAKDRIMGYSLHGIHKDDLVMKLGDYPIR-REGS 273 Query: 289 TGEQKVVLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIF 346 G+ K ++ + LA + T+G P+LLLD+I LD + + R+V+ D QIF Sbjct: 274 QGQNKTYVLALKLAQFDFLRRTSGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDYGQIF 333 Query: 347 MTGTDKSVFDSLNETAKF 364 +T T++ D + + + F Sbjct: 334 ITDTNRDHLDKILQGSSF 351 >gi|223983626|ref|ZP_03633804.1| hypothetical protein HOLDEFILI_01085 [Holdemania filiformis DSM 12042] gi|223964393|gb|EEF68727.1| hypothetical protein HOLDEFILI_01085 [Holdemania filiformis DSM 12042] Length = 368 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 162/355 (45%), Gaps = 25/355 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + + FRNY S + + D + +G N GKTN+LE+I LS R R D+ Sbjct: 1 MKINQIRLKNFRNYDSCQFIPDPHMNVIIGKNAQGKTNLLESIVLLSTTRSHRAVRDQDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F R+ E +S + + + L I+ + E L Sbjct: 61 IREGQ-DFCKAECRL-NTEPEMVLSAVIHGKG----KTLMIHQKPVSRSSEFIGKLNAVL 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 PS +F RRR +D + + PR+ + + +L++ RN LL + D++ Sbjct: 115 FAPSDLELFEAPPKVRRRLMDVEIGKVSPRYMQALSAMMKLLKERNSLLKREHLDNAMLE 174 Query: 185 SIEAQMAELGVKINIARVEMINAL--------SSLIMEYVQKENFPHIKLSLTGFLDGKF 236 ++ QM E + I R + I + S+L E Q H ++T + Sbjct: 175 VLDQQMIEQQLTIIAMRRQFIAKMNESLSRTYSALAEEEAQVSAAYH---TITEQTEPD- 230 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 A++EE ++KL + R+ D + + T G HR DL + + +++ S G++++++ Sbjct: 231 -----AMREEISRKLLENRERDRILKTTSSGVHRDDLSFQLNGRDV-LSYASQGQRRMIV 284 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + L+ I+ P+LLLD++ + LD+ KR LF +++ Q F+T T+ Sbjct: 285 LAWKLSLIDFIAERLNELPVLLLDDVLSELDQQKRVNLFSLISP-EIQTFITTTE 338 >gi|312872636|ref|ZP_07732701.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2062A-h1] gi|311091678|gb|EFQ50057.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2062A-h1] Length = 373 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ + Sbjct: 6 LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F A + G +I L+ + IN + + + + P Sbjct: 63 --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D I+ + + + ++++ RN L ++ D + + Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242 + Q+A L ++ RV ++ L KEN ++ LD ++ SF Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231 Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 E+ Y K L F+ K++ M TL+GPHR DL V + +K + S G+Q+ Sbjct: 232 FDEKDSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +++ I LA L+ PILLLD++ + LD ++ L + +Q F+T TD Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347 >gi|284988633|ref|YP_003407187.1| DNA replication and repair protein RecF [Geodermatophilus obscurus DSM 43160] gi|284061878|gb|ADB72816.1| DNA replication and repair protein RecF [Geodermatophilus obscurus DSM 43160] Length = 399 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 101/394 (25%), Positives = 169/394 (42%), Gaps = 41/394 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + FRN+ + L T+FVG NG GKTN++EA+ +L+ R A A + R Sbjct: 3 LRHLQLGSFRNWDRVDLALRPGPTVFVGRNGEGKTNLVEAVGYLATMGSHRVAGDAPLVR 62 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G S + R E E L +I I R +R +++N + EL ++ Sbjct: 63 QGASQAVVRAALRREDRELLVEIEIN-PGRANR----VRVNRAPLPRPRELLGLVKSVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + G ERRRFLD ++ + PR D++R+++ RN LL + Sbjct: 118 APEDLVLVRGDPAERRRFLDDLLVSRTPRLAGVRSDYDRVLKQRNALLKTARMARGDALA 177 Query: 186 I----EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL-------DG 234 + + +LG ++ AR+ ++ L+ + ++ G+ DG Sbjct: 178 TLDVWDGHLVDLGGQLLAARLRLVADLAPHVARAYAGVAGADAAVAALGYASTVPLAGDG 237 Query: 235 K----------FDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAIT 283 + AL+E A+ R+ D + R TL+GPHR DL++ T Sbjct: 238 TPVAEGTPLPDAAELSAALRERVAE-----RRGDEVDRGMTLVGPHRDDLVISLGS---T 289 Query: 284 IAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 A G S GE + + + L L+ G PIL+LD++ A LD D+R AL + Sbjct: 290 PAKGFASHGESWSLALALKLGCFELL-RADGDEPILVLDDVFATLDADRRAALATVARSA 348 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 + V L T ++++ QA+ + Sbjct: 349 EQSLVTAAVLDDVPAELRST--VVQVAGGQAVPL 380 >gi|259500774|ref|ZP_05743676.1| recombination protein F [Lactobacillus iners DSM 13335] gi|302190775|ref|ZP_07267029.1| recombination protein F [Lactobacillus iners AB-1] gi|312874858|ref|ZP_07734877.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2053A-b] gi|325913713|ref|ZP_08176075.1| DNA replication and repair protein RecF [Lactobacillus iners UPII 60-B] gi|329919805|ref|ZP_08276756.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN 1401G] gi|259167468|gb|EEW51963.1| recombination protein F [Lactobacillus iners DSM 13335] gi|311089603|gb|EFQ48028.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2053A-b] gi|325477072|gb|EGC80222.1| DNA replication and repair protein RecF [Lactobacillus iners UPII 60-B] gi|328937152|gb|EGG33580.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN 1401G] Length = 373 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ + Sbjct: 6 LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F A + G +I L+ + IN + + + + P Sbjct: 63 --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D I+ + + + ++++ RN L ++ D + + Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242 + Q+A L ++ RV ++ L KEN ++ LD ++ SF Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQKEILDIEYKASFPE 231 Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 E+ Y K L F+ K++ M TL+GPHR DL V + +K + S G+Q+ Sbjct: 232 FDEKDSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +++ I LA L+ PILLLD++ + LD ++ L + +Q F+T TD Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347 >gi|194332856|ref|YP_002014716.1| DNA replication and repair protein RecF [Prosthecochloris aestuarii DSM 271] gi|226737818|sp|B4S937|RECF_PROA2 RecName: Full=DNA replication and repair protein recF gi|194310674|gb|ACF45069.1| DNA replication and repair protein RecF [Prosthecochloris aestuarii DSM 271] Length = 370 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 24/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 + I FR ++ L + G NG GKTNILEAI + + +GF R + + Sbjct: 6 IKIQNFRKHSELIFSPSEGINLIFGPNGSGKTNILEAIHYCALTKGFNRTTDRQCMNFSA 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 SF S F G + + + T +S+ +N+ + L + P Sbjct: 66 ESFLLKSLFTSDTGCQ--YRVHVDFSTNGGKSI---SLNNSQLEKFSALIGLIPCILFSP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 + I G ERRRFLD + I + +++ + R+++ RN LL SSW S Sbjct: 121 AEITIVHGSPQERRRFLDNALCQISKSYLEQLLQYRRILQQRNALL-----HSSWDRSSP 175 Query: 188 AQ--------MAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFLDGKFDQ 238 A +AE G I R++ ++ Y + +L+ L Sbjct: 176 APDMNIWTELLAESGAFIIKERMDFLDEFQPYFSNAYAILDTGEIPRLTYRSSLGKALVS 235 Query: 239 S-FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S + + + + + + + ++TL+GPHR D I+ Y D + + S G+ + L+ Sbjct: 236 SDRAGIADSLMHRFGEIQHQEQVRKQTLLGPHR-DEILFYLDGSDVKKYASQGQTRTFLI 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + +A R + + G I LLD+I + LD+ + + ++ G Q +T T+K+ Sbjct: 295 ALKVALQRFLFDKKGEQSIFLLDDIFSELDQRRVERVLEMIAGFG-QSLITSTEKTGLSF 353 Query: 358 LNETA 362 L+E + Sbjct: 354 LHEIS 358 >gi|271961614|ref|YP_003335810.1| recombinational DNA repair ATPase (RecF pathway)-like protein [Streptosporangium roseum DSM 43021] gi|270504789|gb|ACZ83067.1| Recombinational DNA repair ATPase (RecF pathway)- like protein [Streptosporangium roseum DSM 43021] Length = 390 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 96/373 (25%), Positives = 157/373 (42%), Gaps = 35/373 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y ++ L + T FVG NG GKTN++EA+ +++ R A+ + Sbjct: 1 MHVANLSLTDFRSYDTVDLGLEPGVTAFVGPNGQGKTNLVEALGYVATQSSHRVATDGPL 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + + E L I+LE ++ R V R D + LR Sbjct: 61 VRQGAARAIVRSVVVREDRRAL----IELEINPGKANRARLNRSPVSRPRDVIGL-LRTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG------- 176 P + G ERRR+LD ++ A PR D++R+++ R LL Sbjct: 116 LFAPEDLSMVKGDPSERRRYLDDLLVARTPRFAGVRADYDRVLKQRGALLRTAAQARRGG 175 Query: 177 --------------YFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLI-MEYVQ- 217 S++E A +A G ++ AR+E++ AL L+ Y Sbjct: 176 RSGRRADNDAAFAAAGAGDPLSTLEVWDAHLARHGAELLAARLELVEALRPLVAASYAAL 235 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 N L G L + L+E L + R + TL+GPHR DL + Sbjct: 236 APNSAPAALEYRGTLSTEEGSDRATLEERLRAGLLEVRTSEIERGVTLVGPHRDDLFLGL 295 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + + S GE + + LA L+ G P+L+LD++ A LD +R L I Sbjct: 296 GELPAR-GYASHGESWSFALALRLAAYDLL-RADGGDPVLILDDVFAELDNQRRGRLAGI 353 Query: 338 VTDIGSQIFMTGT 350 V Q+ +T Sbjct: 354 VAP-AEQVLITAA 365 >gi|15640046|ref|NP_062598.1| recombination protein F [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147675554|ref|YP_001218398.1| recombination protein F [Vibrio cholerae O395] gi|153819847|ref|ZP_01972514.1| recF protein [Vibrio cholerae NCTC 8457] gi|153821947|ref|ZP_01974614.1| recF protein [Vibrio cholerae B33] gi|227080251|ref|YP_002808802.1| recF protein [Vibrio cholerae M66-2] gi|229508299|ref|ZP_04397803.1| DNA recombination and repair protein RecF [Vibrio cholerae BX 330286] gi|229508862|ref|ZP_04398353.1| DNA recombination and repair protein RecF [Vibrio cholerae B33] gi|229515947|ref|ZP_04405404.1| DNA recombination and repair protein RecF [Vibrio cholerae TMA 21] gi|229517133|ref|ZP_04406579.1| DNA recombination and repair protein RecF [Vibrio cholerae RC9] gi|229606573|ref|YP_002877221.1| recombination protein F [Vibrio cholerae MJ-1236] gi|254225546|ref|ZP_04919155.1| recF protein [Vibrio cholerae V51] gi|254851579|ref|ZP_05240929.1| DNA replication and repair protein recF [Vibrio cholerae MO10] gi|298501199|ref|ZP_07010998.1| recombination protein F [Vibrio cholerae MAK 757] gi|13959488|sp|Q9KVX4|RECF_VIBCH RecName: Full=DNA replication and repair protein recF gi|172047499|sp|A5F493|RECF_VIBC3 RecName: Full=DNA replication and repair protein recF gi|254790498|sp|C3LP87|RECF_VIBCM RecName: Full=DNA replication and repair protein recF gi|9654405|gb|AAF93192.1| recF protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|125621866|gb|EAZ50191.1| recF protein [Vibrio cholerae V51] gi|126509608|gb|EAZ72202.1| recF protein [Vibrio cholerae NCTC 8457] gi|126520567|gb|EAZ77790.1| recF protein [Vibrio cholerae B33] gi|146317437|gb|ABQ21976.1| recF protein [Vibrio cholerae O395] gi|227008139|gb|ACP04351.1| recF protein [Vibrio cholerae M66-2] gi|227011983|gb|ACP08193.1| recF protein [Vibrio cholerae O395] gi|229346196|gb|EEO11168.1| DNA recombination and repair protein RecF [Vibrio cholerae RC9] gi|229347047|gb|EEO12009.1| DNA recombination and repair protein RecF [Vibrio cholerae TMA 21] gi|229354137|gb|EEO19069.1| DNA recombination and repair protein RecF [Vibrio cholerae B33] gi|229354572|gb|EEO19494.1| DNA recombination and repair protein RecF [Vibrio cholerae BX 330286] gi|229369228|gb|ACQ59651.1| DNA recombination and repair protein RecF [Vibrio cholerae MJ-1236] gi|254847284|gb|EET25698.1| DNA replication and repair protein recF [Vibrio cholerae MO10] gi|297540071|gb|EFH76133.1| recombination protein F [Vibrio cholerae MAK 757] Length = 363 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 85/366 (23%), Positives = 169/366 (46%), Gaps = 20/366 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F R+ +D + + + + D S ++I + + +L + L + + Sbjct: 66 SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184 P + + +RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R +N L + + E + + P + L + + DQ + ++ Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ ++ D T GP+++DL + + S G+ K+++ + +A Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351 Query: 364 FMRISN 369 +++ Sbjct: 352 TFHVAH 357 >gi|16077072|ref|NP_387885.1| recombination protein F [Bacillus subtilis subsp. subtilis str. 168] gi|221307813|ref|ZP_03589660.1| recombination protein F [Bacillus subtilis subsp. subtilis str. 168] gi|221312135|ref|ZP_03593940.1| recombination protein F [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317068|ref|ZP_03598362.1| recombination protein F [Bacillus subtilis subsp. subtilis str. JH642] gi|221321331|ref|ZP_03602625.1| recombination protein F [Bacillus subtilis subsp. subtilis str. SMY] gi|132246|sp|P05651|RECF_BACSU RecName: Full=DNA replication and repair protein recF gi|467394|dbj|BAA05240.1| recombination protein [Bacillus subtilis] gi|2632271|emb|CAB11780.1| DNA repair and genetic recombination factor [Bacillus subtilis subsp. subtilis str. 168] Length = 370 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 86/388 (22%), Positives = 170/388 (43%), Gaps = 50/388 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ R Sbjct: 3 IQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG + +I ++ + + ++N + + + + L Sbjct: 63 -----WDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRFLD + + P + + +++++ RN L T D + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDRTM 177 Query: 183 CSSIEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIKLS 227 + Q+ E+ K+ + R++ L L ++Y H L Sbjct: 178 LDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKY-------HTALD 230 Query: 228 LTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 ++ LD + ++F L+E+ ++ TL GPHR D++ Y + Sbjct: 231 VSDPLDLSKIGDSYQEAFSKLREKEIERGV-----------TLSGPHRDDVLF-YVNGRD 278 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-I 341 +GS G+Q+ + + LA LI G PILLLD++ + LD+ +++ L + + Sbjct: 279 VQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQGRV 338 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISN 369 + + T D ++L + F R+ N Sbjct: 339 QTFVTTTSVDGIDHETLRQAGMF-RVQN 365 >gi|300814773|ref|ZP_07095021.1| putative DNA replication and repair protein RecF [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511160|gb|EFK38412.1| putative DNA replication and repair protein RecF [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 358 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 96/356 (26%), Positives = 160/356 (44%), Gaps = 11/356 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + F+ + FRNY SL+L + I G N GKTN+LEAI F+ D+ Sbjct: 1 MNLSFIGLYNFRNYKSLKLNTGPKINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + E + I++ TR++ V+ IN+ D + I Sbjct: 61 INF-SKNEACILGTYENNCYKDNYRIEI-TRNN--VKKYFINEQKTNSKD-FRQARHIIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I +RRRF+D + ID + + + +++ RN+LL + S Sbjct: 116 FSPVDLNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLKISK-NMSLLE 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +++++G KI I R+ I L+ ++ Q + + +L T + ++ Sbjct: 175 IYDRELSKIGSKIIIMRLIAIKELNKYANKHYQNLS-KNDRLKTTYLSTIPLSSNEEEIR 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L + D + T IGPHR D+ DK+ T A GS GEQ+ V++ + L+ Sbjct: 234 ENFYNFLKLNQYKDFQRKNTSIGPHRDDIDFKINDKS-TKAFGSQGEQRSVVLSLKLSEF 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359 LI ILLLD++ + LDE + L + D +Q F+T T+ K F +LN Sbjct: 293 DLIYKKFNDKSILLLDDVFSELDEKRTMYLLDSIKD--TQTFITTTEFKDYFKNLN 346 >gi|257067226|ref|YP_003153481.1| DNA replication and repair protein RecF [Brachybacterium faecium DSM 4810] gi|256558044|gb|ACU83891.1| DNA replication and repair protein RecF [Brachybacterium faecium DSM 4810] Length = 414 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 103/402 (25%), Positives = 164/402 (40%), Gaps = 52/402 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++++FR+Y+ L L T+ VG NG GKTN++EA+ +L+ R A + Sbjct: 1 MQLTSLDLTDFRSYSRLTLPVRPGITVLVGQNGQGKTNVVEAVWYLATLSSHRVPHDAAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + R + + + LE +S R V R+ D L + +R Sbjct: 61 VHRGE---STAIVRASFVRAGRPLQVDLEITPGKSNRARLQGQNVPRLRDLLGE-VRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------- 175 P + RRRFLD ++F I PR D++R+++ R LL + Sbjct: 117 FAPEDLGLIKADPEGRRRFLDELLFEIAPRFASVKADYDRVLKQRGNLLKQMRSMRRGSS 176 Query: 176 ----GYFDSSWCSS-----IEAQMAELGVKINIARVEMINALSS-LIMEY--VQKENFPH 223 G D + +S + Q+A G ++ AR+ ++N LS L Y V + Sbjct: 177 GRSVGGLDPAETASSTLEVWDQQLARYGAELLRARLHLVNRLSPHLGYSYLRVSTDEGAE 236 Query: 224 IKLSLTGFLDGKFDQ-------------------SFCALKEEY---AKKLFDGRKMDSMS 261 L L G D S A +E + + L G + Sbjct: 237 QALDLPPDQRGDVDSPAEIRYRSAVLDQLGAPAGSLPATREIHDGMLEMLAAGHDEEIDR 296 Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG----FAPIL 317 TL GPHR D+ + D + S GE + + + LA L+ G PIL Sbjct: 297 GATLTGPHRDDMEIRLHDFPAK-GYASHGESWSLALALRLASYDLLRLEEGDLGDGEPIL 355 Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 +LD++ + LD +R L RIVT + T D + DSL Sbjct: 356 ILDDVFSELDTRRRERLGRIVTTASQVLITTANDGDIPDSLE 397 >gi|86131710|ref|ZP_01050307.1| DNA replication and repair protein RecF [Dokdonia donghaensis MED134] gi|85817532|gb|EAQ38706.1| DNA replication and repair protein RecF [Dokdonia donghaensis MED134] Length = 363 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 86/358 (24%), Positives = 164/358 (45%), Gaps = 36/358 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N+ S FDA+ FVG+NGVGKTN+L+AI LS G+ SY + Sbjct: 3 LKSLSLINYKNFESKAFTFDAKINCFVGNNGVGKTNVLDAIYHLSFGK-----SYFNPVT 57 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121 + + + F ++G+ + + RD++ V + + ++ D H+ Sbjct: 58 SQNINHNADFFVIDGL-------YEKKERDEKVVVSAKKGQKKVIKRNAKIYDRFADHIG 110 Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----T 174 LV P+ + + S RR+F+D ++ D + ++ + +++ RN LL Sbjct: 111 FLPLVIISPADRDLITEGSDTRRKFIDGVISQSDKSYLSDLLGYSKILSQRNALLKYFAA 170 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 F++ + Q+ G I R + + + + E + + ++LT Sbjct: 171 NNTFNTDTLAVYNEQLEGFGTPIFEKRQQFLERFAPIFNERYKAISGDTENVTLT----- 225 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 ++ S + +++ L + D + T +G H+ DL + + GS G+QK Sbjct: 226 -YNSSLNTMPLKHS--LTNALAKDRSLQYTSVGIHKDDLQFEINGHPVK-KFGSQGQQKS 281 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGT 350 L+ + LA I +G P+LLLD+I LDE++ + +V D G Q+F++ T Sbjct: 282 YLIALKLAQFDFIKQESGTTPLLLLDDIFDKLDENRVQHIIELVNTNDFG-QLFISDT 338 >gi|320527131|ref|ZP_08028318.1| putative recombination protein F [Solobacterium moorei F0204] gi|320132459|gb|EFW25002.1| putative recombination protein F [Solobacterium moorei F0204] Length = 363 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 83/340 (24%), Positives = 151/340 (44%), Gaps = 26/340 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + + FRNY + + F+ + G N GKTN+LE++ +LS R R + R Sbjct: 3 IKNIQLRNFRNYENAYIEFNPSINLITGANAQGKTNLLESLVYLSLTRSHRIVDDKKLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--------RCLQINDVVIRVVDELNK 118 E A I K D++ + + L I+ ++ E Sbjct: 63 --------------NDEMFAGIDCKFVDTDEKDIEVIIHPNGKTLMIHKRPLKKSSEFIG 108 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 L + P RIF+ ERRR +++ + + ++ + F+ ++ RN LL Sbjct: 109 LLNVVLFSPDDLRIFNDQPKERRRVMNQEITKVSTKYLLSLNQFQMYLKDRNALLKSDKI 168 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D ++ ++ QM+++ I R + I + S+I + Q+ + IKL + F + Sbjct: 169 DFNYLDILDEQMSKVEAHIIRERRKFIEVIQSVISKIYQELSGSQIKLEIAY---KTFVE 225 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 ++E+ + + R+ D T +G H DLI D+ + I S G++++V++ Sbjct: 226 DTEEIEEKILEIHRESRQKDMEYHITKVGIHLDDLIFKMDDQNL-IYFASQGQKRMVMLS 284 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 LA I T PILLLD++ + LD ++ L ++V Sbjct: 285 FKLALLNYIKLMTKKQPILLLDDVLSELDYSRQKKLLQMV 324 >gi|259502127|ref|ZP_05745029.1| recombination protein F [Lactobacillus antri DSM 16041] gi|259169940|gb|EEW54435.1| recombination protein F [Lactobacillus antri DSM 16041] Length = 373 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 87/358 (24%), Positives = 149/358 (41%), Gaps = 29/358 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRNY + F + +G N GKTN+LEAI LS R R + ++ Sbjct: 6 LHLHHFRNYEDQTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTTNDRELINWRE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S A + G+ + LE + + + ++N + + + L P Sbjct: 66 KS-----ASISGVVQKTSGKVPLELQFTKEGKRAKVNHLEQARLAQYIGQLNAILFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185 + G RRRF+D + ++ + L+R RN+ L + + D Sbjct: 121 LSLVKGAPAVRRRFMDMEFSQMSSKYLYNASQYRSLLRQRNKYLKQLKYGQQHDQVLLDV 180 Query: 186 IEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFLDGK 235 + Q+A G ++ +AR + L SL E ++ +K++ +D Sbjct: 181 LSDQLAAYGAELVVARFHFLQQLEKWAADLHYQISLNAEKLRLVYATQLKVTAETTVDDA 240 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + Q KE GR++D S T+ GP R D+ K + + GS G+Q+ Sbjct: 241 YQQLLTIFKEN------KGREIDQGS--TMFGPQRDDIRFLVNGKNVQ-SFGSQGQQRTT 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA L+ TG P+LLLD++ + LD ++ L + D Q F+T T S Sbjct: 292 ALAVKLAEIDLMKEQTGEYPLLLLDDVLSELDTVRQTHLLTAIQD-KVQTFLTTTSLS 348 >gi|139439855|ref|ZP_01773220.1| Hypothetical protein COLAER_02254 [Collinsella aerofaciens ATCC 25986] gi|133774783|gb|EBA38603.1| Hypothetical protein COLAER_02254 [Collinsella aerofaciens ATCC 25986] Length = 368 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 168/385 (43%), Gaps = 51/385 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+++ +R++ S RL D TI G N GKTN++EA+ L+ G FR + A++ G Sbjct: 8 LSVAHYRSFDSYRLALDEGVTILAGPNAAGKTNLIEALQLLTSGASFRHPTAAELVHDGV 67 Query: 70 PSFFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 S R+EG + D+ + E +R+ + + V+ V+ Sbjct: 68 GSCKVEL-RLEGDGRVLDMGLSAEDGKRSFSRNGKRCSAAGVRGVLPSVL---------- 116 Query: 124 WLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 P +D + G S+ RR LD + R+ + R + RN LL E + Sbjct: 117 -FCPDHLDMVKRGASV-RRAALDDFGMQLSARYADLASTYGRCVTQRNALLKEAWCCREM 174 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKE--------------NFPHI--K 225 + +A G + + R+ +++ L+ + Y Q + P + + Sbjct: 175 LGAWNDSIARAGAALLVHRLALLDRLAGHVRTAYGQVASGEAANVSYASTLGDLPQVDDR 234 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 L G+ +++ AL E +++ G TL+GPHR ++ ++ + Sbjct: 235 EELKGW---AYERMLAALDEHADEEIRRG--------VTLVGPHRDEIEFAVAGRSAR-S 282 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 S G+Q+ +++ +A + + G AP+LLLD++ + LD ++R A R++ D Q Sbjct: 283 FASQGQQRTLVLAWKVAEVAVARDVLGTAPLLLLDDVMSELDGERRGAFLRLIGD-DIQT 341 Query: 346 FMTGTDKSVF-DSLNETAKFMRISN 369 +T T+ F D L + AK + + Sbjct: 342 VITTTNLGYFTDDLLDRAKVVSMGE 366 >gi|77358985|ref|YP_338560.1| gap repair protein [Pseudoalteromonas haloplanktis TAC125] gi|97180877|sp|Q3IDE8|RECF_PSEHT RecName: Full=DNA replication and repair protein recF gi|76873896|emb|CAI85117.1| gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction [Pseudoalteromonas haloplanktis TAC125] Length = 364 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 19/339 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRN +L L I G+NG GKT++LEAI +LS G+ FR + + + Sbjct: 6 LSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTSKHKSIIAHQQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLVPS 128 F + G + + D+SI + ++ L+I R + EL + + + + P Sbjct: 66 EQFV-----IHGRKAIHDLSIPIGISKTQAGETNLKIQGKASRKISELAQLMPVQIITPE 120 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWCSS 185 +F G ERR+FLD +F ++ F ++++ RN LL + YFD Sbjct: 121 SYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKSKPKNYFDQ--IKF 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + + L +IN R+ I+ + + E L+L L+ F+ + E Sbjct: 179 WDKEFVRLAEQINKLRMAYISRFKQQFFDKMCAE------LTLIRDLEISFNAGWKE-SE 231 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 + L + D+ T GPH++D ++ S G+ K++L + + Sbjct: 232 SLSDALELNFERDARQGFTSKGPHKADFSFSVAGSSVENIF-SRGQLKLLLYALKVTQNS 290 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 LI + T ILL+D++ + L ED + + +++ SQ Sbjct: 291 LIESETDKQSILLIDDLPSELSEDTKEKVGQLLAHCSSQ 329 >gi|121587253|ref|ZP_01677026.1| recF protein [Vibrio cholerae 2740-80] gi|153802501|ref|ZP_01957087.1| recF protein [Vibrio cholerae MZO-3] gi|229520186|ref|ZP_04409613.1| DNA recombination and repair protein RecF [Vibrio cholerae TM 11079-80] gi|262189753|ref|ZP_06048108.1| DNA recombination and repair protein RecF [Vibrio cholerae CT 5369-93] gi|297581952|ref|ZP_06943872.1| recombination protein recF [Vibrio cholerae RC385] gi|121548499|gb|EAX58555.1| recF protein [Vibrio cholerae 2740-80] gi|124121971|gb|EAY40714.1| recF protein [Vibrio cholerae MZO-3] gi|229342780|gb|EEO07771.1| DNA recombination and repair protein RecF [Vibrio cholerae TM 11079-80] gi|262034367|gb|EEY52752.1| DNA recombination and repair protein RecF [Vibrio cholerae CT 5369-93] gi|297533819|gb|EFH72660.1| recombination protein recF [Vibrio cholerae RC385] Length = 363 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 85/366 (23%), Positives = 169/366 (46%), Gaps = 20/366 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F R+ +D + + + + D S ++I + + +L + L + + Sbjct: 66 SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184 P + + +RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R +N L + + E + + P + L + + DQ + ++ Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ ++ D T GP+++DL + + S G+ K+++ + +A Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351 Query: 364 FMRISN 369 +++ Sbjct: 352 TFHVAH 357 >gi|332084890|gb|EGI90073.1| DNA replication and repair protein recF [Shigella boydii 5216-82] Length = 357 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLIKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------K 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|298372052|ref|ZP_06982042.1| RecF protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274956|gb|EFI16507.1| RecF protein [Bacteroidetes oral taxon 274 str. F0058] Length = 364 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 91/356 (25%), Positives = 155/356 (43%), Gaps = 19/356 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +NI +RN LVF + +F G+NG+GKTN+L+A+ +LS + A + R Sbjct: 3 LKKINILNYRNIEESELVFSPKINLFWGNNGMGKTNLLDAVYYLSFCKSHLNAIDNQLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 FF + +A +S ++ R R + L R+ D + + + + + Sbjct: 63 -HDTDFFIIQGEYVFPDSIAKVSCSVKRR--RKKQFLYNKKEYERLADHIGR-IPLVLVS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185 PS + S S ERRRF+D ++ + + +I + ++ RN +L Y D + Sbjct: 119 PSDSSLISEGSDERRRFMDIIISQYNREYLDNLISYNSALKSRNAMLKNNDYIDETMLEV 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ I R E I + ++ ++ + ++ L + +L+ Sbjct: 179 FDEKLCANAAPIFRERTEFITNFIPVFKDFYRRISNKKEEVDL---------RYLSSLEH 229 Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFLAH 303 E KL R D T G H+ DL D ++ S G+ K LV + LA Sbjct: 230 TELRDKLLQSRAKDKYLGFTTAGIHKDDL--DMTLDGFSLKRTASQGQSKSYLVAMKLAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDK-RNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + +G PILLLD+I LD ++ N + I D QIF+T T+ D L Sbjct: 288 FVFLKQISGKTPILLLDDIFDKLDAERVENIIREISEDDFGQIFITNTNHEHIDKL 343 >gi|238061916|ref|ZP_04606625.1| recombination protein F [Micromonospora sp. ATCC 39149] gi|237883727|gb|EEP72555.1| recombination protein F [Micromonospora sp. ATCC 39149] Length = 377 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 160/363 (44%), Gaps = 36/363 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y + + + I +G NG GKTN++EA+ +++ R A+ A + R Sbjct: 3 VRRLELVDFRSYERVGVDLEPGPNILIGANGTGKTNLVEALGYVATLDSHRVATDAPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +G+ S A V +G E + ++LE ++ R R D L LR+ Sbjct: 63 LGATSAVIRCAVVHDGRE----LLVELEIVPGKANRARLGRSPARRARDVLGA-LRLVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178 P + G ERRR+LD ++ + PR+ D+ER+++ RN LL Y Sbjct: 118 APEDLELVRGDPAERRRYLDDLLVSRQPRYAGVRADYERVIKQRNALLRTSYLARKTGGT 177 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----------PHIK 225 D S + + +A G ++ R+E++ AL + + P ++ Sbjct: 178 RGGDLSTLAVWDTHLARHGAELLAGRLELVAALGPHVTKAYDAVAAGRGAAGIAYRPSVE 237 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 L+ D D++ A A R + TL+GPHR DL + Sbjct: 238 LT-----DPVADRAALAEALLAALAE--SRSAEVERGTTLVGPHRDDLALTLGPLPAK-G 289 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 + S GE + + LA L+ + G P+L+LD++ A LD +R L +V SQ+ Sbjct: 290 YASHGESWSFALALRLAGYDLL-RSDGIEPVLVLDDVFAELDVGRRERLAGLVGG-ASQL 347 Query: 346 FMT 348 +T Sbjct: 348 LVT 350 >gi|221195223|ref|ZP_03568279.1| DNA replication and repair protein RecF [Atopobium rimae ATCC 49626] gi|221185126|gb|EEE17517.1| DNA replication and repair protein RecF [Atopobium rimae ATCC 49626] Length = 361 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 83/328 (25%), Positives = 148/328 (45%), Gaps = 9/328 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 +++ FRN+ L + F TI VG N VGKTN +EA+ L+ G FR+ + + G Sbjct: 8 ISLVNFRNFRMLSVDFSQSITILVGHNAVGKTNTIEALQMLTAGYSFRKPTPVQLMLEGE 67 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 A + G + D+S + + R + N D + + + + Sbjct: 68 KQS-KIHAHLTGDGRVIDLSCTISSLR----RQYEKNGKKCHATDIPGDLMSVLFTPDDL 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 I S RR +D + + + + + R + RNRLL E D S S+ + Sbjct: 123 ACIKRSASY-RRGEIDDFGKQANKTYAKVLAAYLRSIEQRNRLLKENVVDFSLLSAWDTS 181 Query: 190 MAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFL-DGKFDQSFCALKEEY 247 +A G + AR+++ LS+ E Y Q + L + + DQ+ L +++ Sbjct: 182 VALGGATLLCARLKLFRRLSAKTSEIYKQISGGEDLVLRYESSIGEISADQTKEELLDKF 241 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L D +D ++T +GPHR D++ K + +GS G+Q+ V++ + +A + Sbjct: 242 LSSLKDAHGVDERRQQTTVGPHRDDIVFLINGKDARM-YGSQGQQRSVILALKMAEVLVS 300 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALF 335 G P+LLLD++ + LD+ +R A+ Sbjct: 301 EEILGTKPLLLLDDVMSELDKSRREAIM 328 >gi|145634167|ref|ZP_01789878.1| recombination protein F [Haemophilus influenzae PittAA] gi|145268611|gb|EDK08604.1| recombination protein F [Haemophilus influenzae PittAA] Length = 359 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 87/367 (23%), Positives = 161/367 (43%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + I ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGKIQESQHQWSIGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ F Q + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362 + I L+D+ ++ LD+DKR L + GSQ+F+T K + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|312871309|ref|ZP_07731407.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 3008A-a] gi|311093323|gb|EFQ51669.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 3008A-a] Length = 373 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ + Sbjct: 6 LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F A + G +I L+ + IN + + + + P Sbjct: 63 --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D I+ + + + ++++ RN L ++ D + + Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNAYLKQISSKKASDPIFLNV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242 + Q+A L ++ RV ++ L KEN ++ LD ++ SF Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231 Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 E+ Y K L F+ K++ M TL+GPHR DL V + +K + S G+Q+ Sbjct: 232 FDEKDSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +++ I LA L+ PILLLD++ + LD ++ L + +Q F+T TD Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347 >gi|312873299|ref|ZP_07733354.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2052A-d] gi|311091179|gb|EFQ49568.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2052A-d] Length = 373 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ + Sbjct: 6 LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F A + G +I L+ + IN + + + + P Sbjct: 63 --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D I+ + + + ++++ RN L ++ D + + Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242 + Q+A L ++ RV ++ L KEN ++ LD ++ SF Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231 Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 E+ Y K L F+ K++ M TL+GPHR DL V + +K + S G+Q+ Sbjct: 232 FDEKDSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +++ I LA L+ PILLLD++ + LD ++ L + +Q F+T TD Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347 >gi|77917621|ref|YP_355436.1| DNA replication and repair protein [Pelobacter carbinolicus DSM 2380] gi|97180840|sp|Q3A8M6|RECF_PELCD RecName: Full=DNA replication and repair protein recF gi|77543704|gb|ABA87266.1| DNA replication and repair protein RecF [Pelobacter carbinolicus DSM 2380] Length = 363 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 149/353 (42%), Gaps = 24/353 (6%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +RN + L + + GDN GKTN LEAI L + FRR ++ IGS Sbjct: 8 LHNYRNIEAAELCPEENFNLLCGDNAQGKTNTLEAIYLLGHFKSFRRGRNEEL--IGSAD 65 Query: 72 FFSTFARVEG---MEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 RV+G +GL + +SI + T D +++ +IN R +E+ P Sbjct: 66 ---RHTRVQGEFLRDGLRETVSITI-TGDKKNI---EINGKRPRQSNEMFGRFPSVLFAP 118 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---SWCS 184 + G RR LDR + P ++R +R RN LL G W Sbjct: 119 EEVSLPKGFPAGRRALLDRALCQTRPSFLDHARAYQRCLRQRNILLKSGAAAPIVLPWTE 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + A + + ++ L + E + L D D LK Sbjct: 179 ELIQTGAMVRLARRRYLDRLLPLLRDIYREICSGRE--SVNLVYPSESDNLSD-----LK 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EE L + ++ T++GPHR D + D+ + + +GS G+Q+ ++ A Sbjct: 232 EELRSNLEREQSRETKYGMTMVGPHRDDPVFMVDDRVLGL-YGSQGQQRSFILAFKTAQI 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + TG+ P+LLLD++++ LD +++ FR + Q+F+T T+ S + Sbjct: 291 IDLEKETGYTPLLLLDDMTSELDRKRQDYFFRFLHQRQGQVFITCTELSPLQN 343 >gi|186893347|ref|YP_001870459.1| recombination protein F [Yersinia pseudotuberculosis PB1/+] gi|226737851|sp|B2JYI8|RECF_YERPB RecName: Full=DNA replication and repair protein recF gi|186696373|gb|ACC87002.1| DNA replication and repair protein RecF [Yersinia pseudotuberculosis PB1/+] Length = 361 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 93/361 (25%), Positives = 151/361 (41%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L A VG NG GKT++LEA+ L GR FR V R Sbjct: 6 LLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHEC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E A + + + D VR I+ V EL + L + + P Sbjct: 66 AEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + S + I A Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ----VSRYTQIRAW 177 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 E+ I E I+ + + + + L L F F Q + +Y + Sbjct: 178 DQEI-----IPLAERISEWRAAYSDAIAADISATCALFLPEFALSFFFQRGWDKESDYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLARQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|255746804|ref|ZP_05420750.1| DNA recombination and repair protein RecF [Vibrio cholera CIRS 101] gi|262155883|ref|ZP_06029005.1| DNA recombination and repair protein RecF [Vibrio cholerae INDRE 91/1] gi|262167102|ref|ZP_06034817.1| DNA recombination and repair protein RecF [Vibrio cholerae RC27] gi|255735561|gb|EET90960.1| DNA recombination and repair protein RecF [Vibrio cholera CIRS 101] gi|262024488|gb|EEY43174.1| DNA recombination and repair protein RecF [Vibrio cholerae RC27] gi|262030335|gb|EEY48977.1| DNA recombination and repair protein RecF [Vibrio cholerae INDRE 91/1] Length = 357 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 84/364 (23%), Positives = 168/364 (46%), Gaps = 20/364 (5%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 2 IQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNECSE 61 Query: 72 FFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 F R+ +D + + + + D S ++I + + +L + L + + P Sbjct: 62 LF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIHPE 119 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSI 186 + + +RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 120 GFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW--- 176 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A L +I+ R +N L + + E + + P + L + + DQ + ++ E+ Sbjct: 177 DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSILEK 235 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 ++ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 236 NFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQGQH 287 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K Sbjct: 288 LTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSKTF 347 Query: 366 RISN 369 +++ Sbjct: 348 HVAH 351 >gi|325969852|ref|YP_004246043.1| DNA replication and repair protein RecF [Spirochaeta sp. Buddy] gi|324025090|gb|ADY11849.1| DNA replication and repair protein RecF [Spirochaeta sp. Buddy] Length = 360 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 93/366 (25%), Positives = 157/366 (42%), Gaps = 31/366 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L ++FRN S R+ D + +G NG GKTN+LEA+ L G FR ++T G Sbjct: 6 LWTNQFRNLVSQRIPVDNRQVFLIGPNGQGKTNLLEALYALCYGSSFRTNQLKELTVHGE 65 Query: 70 PSFFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 +F ++ G+ L D I+ LE +D + R + ++D ++ EL + I + Sbjct: 66 KAF-----KIVGIY-LGDDQIRHTLMLEWKDGK--RSMSLDDREVKDRKELIYN--IPCI 115 Query: 126 VPSMDRIF--SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 V S D IF G +RRRF D+ + +P + + ++R RN+ + +G F+ Sbjct: 116 VFSHDDIFFIKGEPEQRRRFFDQTMSMYNPLFFDDLRRYRLVLRQRNQAIKDGRFE--LL 173 Query: 184 SSIEAQMAELGVKINIARV----EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q+A+ G+ I R E S+ + Q HI+ + + Sbjct: 174 DLYDLQLAKYGLAIQSERTRAVYEFDQIFPSMYKDVSQNTMEVHIEYHPSW--------N 225 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 CA +EE + L R D T G HR +V + + GSTG+ ++ + Sbjct: 226 DCATEEEIVEYLARTRSRDISMLTTTSGIHRDRFLVMEAGQPFSQT-GSTGQLRLASLIF 284 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 A TG P++L+D++ LD +KR ++ F ++ F L Sbjct: 285 RTAQMAFFQKKTGKEPLILVDDVLLELDFEKREHFLHLMQTYCQAFFTFLPEEHYFSELA 344 Query: 360 ETAKFM 365 E + Sbjct: 345 EEGALL 350 >gi|229524915|ref|ZP_04414320.1| DNA recombination and repair protein RecF [Vibrio cholerae bv. albensis VL426] gi|229338496|gb|EEO03513.1| DNA recombination and repair protein RecF [Vibrio cholerae bv. albensis VL426] Length = 363 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 85/366 (23%), Positives = 169/366 (46%), Gaps = 20/366 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F R+ +D + + + + D S ++I + + +L + L + + Sbjct: 66 SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184 P + + +RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R +N L + + E + + P + L + + DQ + ++ Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ ++ D T GP+++DL + + S G+ K+++ + +A Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADGLKGTGAQVFVSSITESQVADMLDESSK 351 Query: 364 FMRISN 369 +++ Sbjct: 352 TFHVAH 357 >gi|313112549|ref|ZP_07798213.1| putative recombination protein F [Faecalibacterium cf. prausnitzii KLE1255] gi|310625131|gb|EFQ08422.1| putative recombination protein F [Faecalibacterium cf. prausnitzii KLE1255] Length = 373 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 95/374 (25%), Positives = 166/374 (44%), Gaps = 42/374 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L ++ +RN A+ +L + T+ G+NG GKTN+LEAI L+ G+ FR A++ Sbjct: 1 MRLLSLEVANYRNIAAAQLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 65 TRIGSPSFFSTFARVEGM-----------EGLADISIKLETRD-DRSVRCLQINDVVIRV 112 R G TFA +E + + A++ I + T D R R +N + Sbjct: 61 VRRG-----ETFAVLEAVTQRTRQEDQEPDEPANVRITVGTPDAQRPGRYASVNGSPPKR 115 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 L P + G RRRFLD + + P + + R ++ +N L Sbjct: 116 AAGLAGSFPAVVFDPGHLSLVKGAPEGRRRFLDAALCQLYPGYLATYRRYVRALQQKNAL 175 Query: 173 L--TEGYFDSSW---CSSIE---AQMAELGVKINIARVEMINALSSL-IMEYVQKENFPH 223 L + G + W C+ +E ++A G I R E + L+ L Y + H Sbjct: 176 LRHSAGGTERPWAEKCALLEVLNVELAAQGEAIQKRRREYLALLTPLACANYAE---LSH 232 Query: 224 IKLSLTGFLDGKFDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 + +F+ + LK+ ++L G ++L G HR D+ + D+ Sbjct: 233 GAERMAVRYAAQFEPGGLSALLKQRQNEELRAG--------QSLCGIHREDVELLLDDQP 284 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S G+Q+ V++ + +A A + TG P+LLLD++ + LDE ++ L + + Sbjct: 285 AKV-FASQGQQRSVVLSLKMAEAAAAARITGEHPVLLLDDVLSELDEGRKQYLLTRMKE- 342 Query: 342 GSQIFMTGTDKSVF 355 Q F+T D + F Sbjct: 343 -KQTFVTSCDDTAF 355 >gi|120435150|ref|YP_860836.1| DNA replication and repair protein RecF [Gramella forsetii KT0803] gi|226737803|sp|A0LZH4|RECF_GRAFK RecName: Full=DNA replication and repair protein recF gi|117577300|emb|CAL65769.1| DNA replication and repair protein RecF [Gramella forsetii KT0803] Length = 359 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 169/379 (44%), Gaps = 40/379 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N + FD + VG+NGVGKTN+L++I LS G+ SY + Sbjct: 3 LKNLSLLNYKNLKTAEFDFDEKINCLVGNNGVGKTNVLDSIYLLSFGK-----SYFNPIT 57 Query: 67 IGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + + S F VEG D + K L + + ++ N+ + ++++ H+ Sbjct: 58 SQNINHDSDFFVVEGEFKKNDKAEKILASAKKGQKKIIKRNN---KAYEKVSDHI---GF 111 Query: 126 VPSM-------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----T 174 +P++ D I G S RR+F+D ++ D + +++ + +L+ RN LL Sbjct: 112 IPTVIISPADRDLIIEG-SETRRKFMDGVISQSDQSYLNKLLQYTKLVSQRNSLLKYFAA 170 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFLD 233 F+ QM+ LG + R E + + + Y N I + Sbjct: 171 NNTFERDTLEVYNLQMSSLGQDLFEKRKEFLKEFIPIFNKRYADITNNKEI--VDINYKS 228 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 FD S L EE +K D + T +G H+ DL + I GS G+QK Sbjct: 229 QLFDNSLANLLEENLQK-------DMALQYTSVGTHKDDLSFEIEGHPIK-KFGSQGQQK 280 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTD- 351 L+ + LA I + PILLLD+I LDE++ + +V TD QIF++ T Sbjct: 281 SFLIALKLAQFDFIKKISKVNPILLLDDIFDKLDENRVAHIVALVATDELGQIFLSDTHA 340 Query: 352 ---KSVFDSLNETAKFMRI 367 + V S N++ K ++ Sbjct: 341 ERTEKVVKSSNQSYKIFKL 359 >gi|260891933|ref|YP_003238030.1| DNA replication and repair protein RecF [Ammonifex degensii KC4] gi|260864074|gb|ACX51180.1| DNA replication and repair protein RecF [Ammonifex degensii KC4] Length = 358 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 93/355 (26%), Positives = 155/355 (43%), Gaps = 25/355 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + FRNY L + + G N GKTN+LEA+ F+ GR FR ++ R Sbjct: 3 IRSLFLRNFRNYCELEWEPSSGINLLKGPNAAGKTNLLEALYFVLCGRSFRTLREEEIVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G T ++G A I+ E R + + L D + + + Sbjct: 63 TG-----ETTTLIKGKIATAWGEIETEVRFKKGTKLLFYQGKPASRRDFPGEKV-VLLFR 116 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + +G ERR F +R++ + P + + ++R + RN LL +G W Sbjct: 117 PEDLLVVTGTPAERRGFFNRVLAKLVPGYEEVLTRYQRALEQRNALLRLPEKKGEELEIW 176 Query: 183 CSSIEAQMAELGVKINIARVEMINAL-SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 ++ + A L ++ + + +I L SSL E V K KL L + Sbjct: 177 TEALVSAGALL-YRLRVEGLGLIGPLTSSLYRELVGK------KLVLRYATNAVSPAKEK 229 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E++A+ L + + + +TL+GPHR D IV+ D GS GE + ++ + Sbjct: 230 PLAEQFAEALSALAEKEKVLGQTLVGPHRDDFLFIVEGEDLRY---KGSRGEVRAAVLAL 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 LA A+L+ TG I LD++ + D +R AL + + Q F+T + + Sbjct: 287 KLAEAKLLEKMTGERTIFFLDDVFSEFDPQRRRALALYLEE--RQSFVTSAEPEL 339 >gi|294638325|ref|ZP_06716578.1| DNA replication and repair protein RecF [Edwardsiella tarda ATCC 23685] gi|291088578|gb|EFE21139.1| DNA replication and repair protein RecF [Edwardsiella tarda ATCC 23685] Length = 361 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 94/368 (25%), Positives = 158/368 (42%), Gaps = 16/368 (4%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ + L I +FRN S L + VG NG GKT++LEAI L GR FR Sbjct: 3 RMALTRLMIRDFRNIESADLAPSSGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSQQAGR 62 Query: 64 VTRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 V R +F R++ G E + + + D VR I+ V EL + L + Sbjct: 63 VIRHDCATFI-LHGRIDAGGEREWAVGLSKNRQGDSKVR---IDGSDGHKVAELAQMLPM 118 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + P + +G RR FLD F D + RL++ RN L + S Sbjct: 119 QLITPEGFTLLNGGPKYRRAFLDWGCFHGDGDFFTAWSNLRRLLKQRNAALRQ-VTRYSQ 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + ++ L K++ R A++ I + P LS + F+ G +D+ Sbjct: 178 IRPWDQELVPLANKVSALRAAYSEAIAQDIAATC-SQFLPEYALSFS-FMRG-WDR---- 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + EY + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 231 -ESEYGELLERHFERDRALTYTALGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLA 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNET 361 ++ +G + L+D+ ++ LD +R L + G+Q+F++ + V D ++E Sbjct: 289 QGEYLTRHSGRQCLYLIDDFASELDAGRRRLLAERLKSTGAQVFVSAVNADQVGDMVDEK 348 Query: 362 AKFMRISN 369 K R+ Sbjct: 349 GKMFRVEQ 356 >gi|268318289|ref|YP_003292008.1| DNA replication and repair protein RecF [Rhodothermus marinus DSM 4252] gi|262335823|gb|ACY49620.1| DNA replication and repair protein RecF [Rhodothermus marinus DSM 4252] Length = 387 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 86/372 (23%), Positives = 154/372 (41%), Gaps = 16/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + FR + R+ F + + G NG GKTN+LEAI +L + F A + R Sbjct: 3 LRSLRVRNFRAHEDTRVTFAPRINLIGGPNGAGKTNLLEAIHYLCLSKSFLAAQDSYALR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+P FF G + ++ ++L R N + + +L L + L Sbjct: 63 EGAP-FFELEGVFAGTQR-PELVVRLIYVPGEGKRVF-FNGAPLERLADLVGELPVVVLS 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFDSS 181 P+ + G ERRRFLD ++ P + + ++ + R +R RN LL S Sbjct: 120 PADQALTGGPPEERRRFLDNLLSQAYPAYLQDLLQYRRALRQRNELLARWRRHPASVQPS 179 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ----KENFPHIKLSLTGFLDGKFD 237 S + ++ LG ++ R+ + ++ + E P I+ LD + D Sbjct: 180 LLESWQEELVALGSRLIHRRLRFVQEFAAYLAEAHACLGLSAEIPRIEYVTVAPLDPEAD 239 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 A+ + +L + RTL GPHR +L++ + + S G+ +++ + Sbjct: 240 PE--AIAAAFRARLQRLAPREREQGRTLTGPHRDELVLRLNGLEVR-RYASQGQHRIMGL 296 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA + P+LLLD++ LD + + ++ G QI + + D Sbjct: 297 ALKLAKFFYLRARRDETPLLLLDDVFDGLDRYRTQRILELLQH-GEQIEQSFVTSARLDL 355 Query: 358 LNETAKFMRISN 369 L E N Sbjct: 356 LQELQTLAAPEN 367 >gi|283457092|ref|YP_003361655.1| recombinational DNA repair ATPase [Rothia mucilaginosa DY-18] gi|283133070|dbj|BAI63835.1| recombinational DNA repair ATPase [Rothia mucilaginosa DY-18] Length = 450 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 94/376 (25%), Positives = 161/376 (42%), Gaps = 50/376 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I +++ ++R YA L L A T+F+G NGVGKTNI+EAI + + R + + Sbjct: 38 VYIDHISLLDYRTYALLSLPLSAGVTVFLGSNGVGKTNIVEAIDYAASLSSHRVSHDGPL 97 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + R + G + E +S R ++IN E R Sbjct: 98 VRAGA---SRAYIRTRTVRGSQQTVTEFEIAPGQSNR-VRINRAAPVRAKEALGIARTVL 153 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P ++ G RRRF+D + ++ P ++ER++R RN LL ++ Sbjct: 154 FSPEDLQLVKGDPAGRRRFVDDLASSLRPVVSGYRSEYERILRQRNSLLKSMQRNARDEN 213 Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 S S + Q++ LG ++ AR ++ P ++ + G DG + Sbjct: 214 ALSTLSVWDEQLSTLGAQLLSARFRLLQRF------------LPQLRRAYAGLTDGSKEV 261 Query: 239 SF-----------------CALK--EEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIV 275 F AL E+ + L G R+ D + R TL+GPHR D+ + Sbjct: 262 GFNYESTVFSSMGERSIEHAALMRVEDLKEALMRGFAERRRDEIERGVTLVGPHREDITL 321 Query: 276 DYCDKAIT--IAHGSTGEQKVVL-VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 + +HG + + L + + H ++ G +PIL+LD++ A LD +R+ Sbjct: 322 LLGGMPVKYFASHGESWSFALALKLASWFVHVE-DDSSVGSSPILILDDVFAELDSARRH 380 Query: 333 ALFRIVTDIGSQIFMT 348 L +V D Q+ +T Sbjct: 381 RLGAMVAD-AEQVLIT 395 >gi|260581930|ref|ZP_05849726.1| recombinational DNA repair ATPase [Haemophilus influenzae NT127] gi|260095123|gb|EEW79015.1| recombinational DNA repair ATPase [Haemophilus influenzae NT127] Length = 359 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 161/367 (43%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLNFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ F Q + Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALCPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362 + I L+D+ ++ LD+DKR L + GSQ+F+T K + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|182414266|ref|YP_001819332.1| DNA replication and repair protein RecF [Opitutus terrae PB90-1] gi|259563666|sp|B1ZSD3|RECF_OPITP RecName: Full=DNA replication and repair protein recF gi|177841480|gb|ACB75732.1| DNA replication and repair protein RecF [Opitutus terrae PB90-1] Length = 366 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 93/352 (26%), Positives = 151/352 (42%), Gaps = 21/352 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + FRN L F + VG NG GKTN+LEA FL+ R FR + Sbjct: 1 MRLRHLTLRHFRNVGFAALAFSGRQQFLVGLNGQGKTNLLEAAGFLTALRSFRTTDNKLL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + + G ++IKL RD + + V R+ D L + + Sbjct: 61 IQHGQHTGAISSELTHEQLGDTKLTIKLR-RDGKELWSDATR--VTRLADHLGRFPTV-- 115 Query: 125 LVPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + S D + G RRR+LD + ++D + R + + R + RN LL G + Sbjct: 116 VFSSQDLHLVRGAPALRRRWLDLTLASMDAGYLRALQTYSRALADRNALLKRGNAADAEL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLTGFLDGKFDQS 239 + E Q+A V + R + L + + + + + L DG ++ Sbjct: 176 DAFEQQLAPAAVALLATRTAALALLGAKLAVAYDRLCAGDAAEKVGLHYEPSFDGPSTEA 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVG 298 + A + R D+ R TL+GPHR D V A A S G+Q+ +++ Sbjct: 236 WLA-------RFESSRGRDAQFRTTLVGPHRDDFSFVVRGTAAKDFA--SEGQQRSLVLA 286 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + LA A +G P+LL D++ LD +R + + D SQI TGT Sbjct: 287 LRLAQAEWGHEKSGTRPVLLADDVLGELDPLRRRRFWASI-DPESQILATGT 337 >gi|108248035|emb|CAK32505.1| hypothetical protein [uncultured microorganism] Length = 370 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 156/364 (42%), Gaps = 45/364 (12%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD---VTRIG 68 I ++N A RL F + +G+NG GKTN+L+AI +LS R F AS +D V R G Sbjct: 8 IVNYKNIAEARLEFSPKLNCLIGNNGQGKTNVLDAIYYLSMCRSF--ASTSDNSAVIRHG 65 Query: 69 SPSFF--STFARVEGMEGLADISIKLE-------TRDDRSVRCLQINDVVIRVVDELNKH 119 P ++ R E +IS+ L+ RD + + L + ++ VV Sbjct: 66 EPYMMLQGSYTR---QETPLEISVALQRGKRKVVRRDGKEYQRLSQHIGLLPVV------ 116 Query: 120 LRISWLVPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 +V MD + G ERRRF+D ++ D + +I + + + RN ++ + Sbjct: 117 -----MVSPMDWDLVRGSGEERRRFMDLIISQNDNEYLDALIRYNKAVEQRNAMIKKEMR 171 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGK 235 D ++E MA+ I+ R + + + M Y + +SL + DG Sbjct: 172 DPLLYETVEQAMAQHAALIHQRRSQWVEQFLPIFMHYYHAVAGDNETVSLHYKSHLNDGT 231 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + A +E D + T G HR D+ + D + GS G+ K Sbjct: 232 MQEHLAATRER-----------DLIIGHTTRGIHRDDIELMLDDYPMRHT-GSQGQCKTY 279 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSV 354 + + A + PILLLD+I LD + + +V +D QIF+T T+++ Sbjct: 280 TIALRFAQFDFLKANNATVPILLLDDIFDRLDASRVERIVDVVSSDRFGQIFITDTNRTH 339 Query: 355 FDSL 358 D + Sbjct: 340 LDEI 343 >gi|169627112|ref|YP_001700761.1| recombination protein F [Mycobacterium abscessus ATCC 19977] gi|169239079|emb|CAM60107.1| DNA replication and repair protein RecF [Mycobacterium abscessus] Length = 401 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 164/372 (44%), Gaps = 30/372 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++ + L + T+FVG NG GKTN++EA+ + S R A+ A + Sbjct: 20 VYVRQLGLRDFRSWERVNLELEPGRTVFVGPNGYGKTNLVEALWYSSTLGSHRVATDAPL 79 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + ST +G E ++I LE R+ + ++N +R E+ L Sbjct: 80 IRTGAERAVVSTIVVNDGRE----LAIDLEIAAGRANKA-RVNRSPVRSPREVLGILHAV 134 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------ 177 P + G +RRRFLD ++ PR D+++++R R LL Sbjct: 135 LFAPEDLSLVRGDPADRRRFLDDLLIQRRPRMAGVRADYDKVLRQRTALLKTAMAALRQR 194 Query: 178 FDSSWCSSIEAQMAEL---GVKINIARVEMINALSSLIMEYVQ---KENFP---HIKLSL 228 D S +++ L G ++ AR+E++ L L+ + Q + P + S+ Sbjct: 195 HDQSVLDTLDVWDGHLVAHGAELLSARIELVGELHPLVEKSYQLLAPASRPADIAYRSSV 254 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 G G S L + L R + L+GPHR DL + D S Sbjct: 255 EGVEAG---LSVEHLADALQAGLVAKRSAEIERGVCLVGPHRDDLELRLGDGPAK-GFAS 310 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G P+L+LD++ A LD +R +L + D Q+ +T Sbjct: 311 HGESWSFALALRLAAFDLL-RADGTDPVLMLDDVFAELDGARRRSLATVAAD-AEQVLVT 368 Query: 349 GTDKSVFDSLNE 360 +V D + E Sbjct: 369 A---AVPDDVPE 377 >gi|145638187|ref|ZP_01793797.1| recombination protein F [Haemophilus influenzae PittII] gi|145272516|gb|EDK12423.1| recombination protein F [Haemophilus influenzae PittII] gi|309751343|gb|ADO81327.1| DNA replication and repair protein RecF [Haemophilus influenzae R2866] Length = 359 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 161/367 (43%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLHFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ F Q + Sbjct: 176 VWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362 + I L+D+ ++ LD+DKR L + GSQ+F+T K + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|256374164|ref|YP_003097824.1| recombination protein F [Actinosynnema mirum DSM 43827] gi|255918467|gb|ACU33978.1| DNA replication and repair protein RecF [Actinosynnema mirum DSM 43827] Length = 371 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 21/355 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +++FR++ L F+ + VG NG GKTN++EA+ +++ R AS A + R Sbjct: 3 VRHLQVTDFRSWEHADLAFEPGVNVLVGRNGHGKTNLVEALGYVATLGSHRVASDAPLIR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ A V EG E L ++LE R+ R V R D L LR Sbjct: 63 SGAQRAVVRTAVVNEGRELL----VELEITPGRANRARVNRGPVPRPRDVLGI-LRTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184 P + G ERRRFLD ++ PR+ D+ER++R R LL T S+ Sbjct: 118 APEDLSLVRGDPGERRRFLDELLTLRAPRYAGVRSDYERVLRQRGALLKTVRSVRSAELG 177 Query: 185 SI---EAQMAELGVKINIARVEMI---NALSSLIMEYVQKENFPHI---KLSLTGFLDGK 235 ++ + +A+ G ++ AR++++ ++ V E+ P + + SL G Sbjct: 178 TLDVWDGHLAKHGAELLAARLDLVAAIAPHAAAAYAEVAPESRPALLSYRSSLGEAFPGT 237 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 D+ L++ +L R + L+GPHR DL + + + S GE Sbjct: 238 HDREV--LEDALLAELHRLRPQEIDRGVCLVGPHRDDLELSLGELPAK-GYASHGESWSF 294 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + L L+ G P+L+LD++ A LD +R L ++ Q+F+T Sbjct: 295 ALALRLGAYELLRE-EGAEPVLVLDDVFAELDRGRRRQLAKVAA-AAEQVFITAA 347 >gi|163802135|ref|ZP_02196030.1| recombination protein F [Vibrio sp. AND4] gi|159173940|gb|EDP58750.1| recombination protein F [Vibrio sp. AND4] Length = 359 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 161/365 (44%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT+ILEA+ L GR F+ + V + Sbjct: 6 LIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSILEAVYLLGHGRSFKSSLTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF +P F+RL + RN LL Y + S+ Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R I + + + E + + P ++ L + D + Sbjct: 179 -DQEMARLAENISQWRALYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----H 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E +K F+ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 233 EILEKNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + + G+Q+F++ TD + D L++T K Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDNQIADMLDDTGKL 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|59710618|ref|YP_203394.1| recombination protein F [Vibrio fischeri ES114] gi|75507126|sp|Q5E8Z0|RECF_VIBF1 RecName: Full=DNA replication and repair protein recF gi|59478719|gb|AAW84506.1| gap repair protein [Vibrio fischeri ES114] Length = 359 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 164/365 (44%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I++FRN + + + +G NG GKT++LEAI L GR F+ + + R Sbjct: 6 LIINDFRNITTCDIQLSSGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIRNDC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F E E + I + + D + ++I + + +L K L + + P Sbjct: 66 DELFIHGRFTTPEQFE----LPIGINKQRDGTTE-VKIGGESGQKLAQLAKVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF ++P +RL + RN LL Y + S+ Sbjct: 121 EGFELVTDGPKFRRAFIDWGVFHVEPAFYDAWSRVKRLTKQRNALLKTANSYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++A+L KI+ RV+ IN +S + Q P + L+ + + + Sbjct: 179 -DLELAQLSEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWDRETPYA---- 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E KK F+ D T+ GP+++DL + + S G+ K+++ + LA + Sbjct: 233 ELLKKNFE---RDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + + +Q+F++ T + + D ++ +K Sbjct: 289 HLTEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDDESKM 348 Query: 365 MRISN 369 I + Sbjct: 349 FEIEH 353 >gi|295101861|emb|CBK99406.1| recF protein [Faecalibacterium prausnitzii L2-6] Length = 373 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 91/368 (24%), Positives = 161/368 (43%), Gaps = 30/368 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RN AS L + T+ G+NG GKTN+LEAI L+ G+ FR A++ Sbjct: 1 MRLLSLEVENYRNIASASLTPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 65 TRIGSP------SFFSTFARVEGMEGLADISIKLETRDD-RSVRCLQINDVVIRVVDELN 117 R G P S + E I + + D R R + +N ++ L Sbjct: 61 VRRGEPFAVLKASTLRAQQEEQETEEPNRIRLTVGAPDSPRPGRTVSVNGGAVKRAASLA 120 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP-------RHRRRMIDFERLMRGRN 170 P + G RR+FLD + + P R+ R + L+R + Sbjct: 121 GSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLTLYRRYVRALQQKNALLRRSS 180 Query: 171 RLLTEGYFDS-SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 + Y + + + ++A+ G I R + ALS L ++ + LSL Sbjct: 181 NGIERPYAEKRALLEVLNLELAQQGEAIQQRRRAYLAALSPLACANYEELSRGAETLSLR 240 Query: 230 GFLDGKFDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 +F+ A L+++ ++L G ++L GPHR DL + D + Sbjct: 241 --YAAQFEPGGLARLLQQKMPEELRAG--------QSLCGPHREDLDL-LLDGQPAKVYA 289 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S G+Q+ V++ + +A A ++ TG P++LLD++ + LD+ ++ L + + Q F+ Sbjct: 290 SQGQQRSVVLSLKMAEAAAAASITGEHPVMLLDDVLSELDDGRKQYLLTRMRE--KQTFV 347 Query: 348 TGTDKSVF 355 T D + F Sbjct: 348 TSCDDTAF 355 >gi|189499003|ref|YP_001958473.1| DNA replication and repair protein RecF [Chlorobium phaeobacteroides BS1] gi|226737774|sp|B3EJI1|RECF_CHLPB RecName: Full=DNA replication and repair protein recF gi|189494444|gb|ACE02992.1| DNA replication and repair protein RecF [Chlorobium phaeobacteroides BS1] Length = 363 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 86/362 (23%), Positives = 160/362 (44%), Gaps = 28/362 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + + FR + L T+ G NG GKTNILEA+ + + RG R+ + Sbjct: 1 MRLQEIQLVNFRKHKELVFAPSEAITVVYGPNGSGKTNILEAVHYCTLARGLNRSLDREC 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + F TFA G+E +S+K+ + + IN DEL K+ ++ Sbjct: 61 LNFDAGYFLLQGTFADDRGIE----LSVKVSYEKNVEKKIF-INS------DELKKYSQL 109 Query: 123 SWLVPSMD------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--- 173 +P + + +G ERRRF+D + + + ++ + R+++ RN LL Sbjct: 110 IGRIPCVTFSPMELSLVNGSPQERRRFMDNALSQTNKSYLDDLLQYRRVLQQRNTLLGAV 169 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 E D ++ +L I R+ I L I ++ + Sbjct: 170 NEKGMDRDSLEVWTEKLTQLACSIVSERLAFIERLFVYIEPVYEQLGLGEVPGISYRSAA 229 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMS---RRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 G+ A +E ++ + R+++ +++L GPHR DL+ + D + + S G Sbjct: 230 GRHANEI-APEELFSFMMQRFREIEHQEIFRKQSLAGPHRDDLVFRFNDTDVK-KYASQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + L+ + LA L+S+TTG P+ LLD++ + LD + + + G I +T T Sbjct: 288 QLRTFLIAVKLALHTLVSDTTGERPLFLLDDLFSELDGTRIEKILEQLEGAGQSI-ITAT 346 Query: 351 DK 352 D+ Sbjct: 347 DR 348 >gi|321313671|ref|YP_004205958.1| recombination protein F [Bacillus subtilis BSn5] gi|320019945|gb|ADV94931.1| recombination protein F [Bacillus subtilis BSn5] Length = 370 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 83/374 (22%), Positives = 164/374 (43%), Gaps = 22/374 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ R Sbjct: 3 IQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG + +I ++ + + ++N + + + + L Sbjct: 63 -----WDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRFLD + + P + + +++++ RN L T D + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDRTM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDGKF 236 + Q+ E+ K+ + R++ L ++ Q + L LD Sbjct: 178 LDVLTDQLVEVAAKVVVKRLQFTAQLE----KWAQPIHAGISRGLEELTLKYHTALDVSD 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + + Y + R+ + TL GPHR D++ Y + +GS G+Q+ Sbjct: 234 PLELSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLF-YVNGRDVQTYGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVF 355 + + LA LI G PILLLD++ + LD+ +++ L + + + + T D Sbjct: 293 LSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDH 352 Query: 356 DSLNETAKFMRISN 369 ++L + F R+ N Sbjct: 353 ETLRQAGMF-RVQN 365 >gi|121727885|ref|ZP_01680944.1| recF protein [Vibrio cholerae V52] gi|121629829|gb|EAX62244.1| recF protein [Vibrio cholerae V52] Length = 363 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 84/366 (22%), Positives = 169/366 (46%), Gaps = 20/366 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F R+ +D + + + + D S ++I + + +L + L + + Sbjct: 66 SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184 P + + +RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R +N L + + E + + P + L + + DQ + ++ Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ ++ D + GP+++DL + + S G+ K+++ + +A Sbjct: 240 EKNFER-------DQQLGYSFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351 Query: 364 FMRISN 369 +++ Sbjct: 352 TFHVAH 357 >gi|284040343|ref|YP_003390273.1| DNA replication and repair protein RecF [Spirosoma linguale DSM 74] gi|283819636|gb|ADB41474.1| DNA replication and repair protein RecF [Spirosoma linguale DSM 74] Length = 368 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 164/370 (44%), Gaps = 63/370 (17%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+++ F+NY +R F Q + VG NG GKTN+L+A+ FLS + Sbjct: 6 LSLTNFKNYEDVRYTFSRQVNVLVGPNGSGKTNLLDAVYFLSLSK--------------- 50 Query: 70 PSFFSTFARVEGMEGLAD-----ISIKLETRDDRSVR---CLQINDVVIRVVDE-----L 116 S F + M L D I E DDR+V+ LQ + + D+ + Sbjct: 51 ----SAFQSQDAMSILHDTDYFIIDGIFEEHDDRTVQITISLQRGQRKVLMADKKPYERI 106 Query: 117 NKHL---RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 ++H+ + + P+ + S +RR F D ++ +DP + R + ++++++ RN LL Sbjct: 107 SEHIGRFPVVLVAPNDTDLVREHSEDRRHFFDGVLSQLDPEYLRNYLMYQQILKQRNSLL 166 Query: 174 T----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 D+ + + + ELG KI+ R + I+ E P + S Sbjct: 167 KLFAERNQVDNDLLDTYDEPLLELGQKIHDRRRQFID------------EFLPGFR-SHY 213 Query: 230 GFLDGKFDQSFCALKEE-----YAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAI 282 +L ++ + E +A + R+ D++ +RT +G H+ D I++ + Sbjct: 214 AYLSDDREEVTIQYESEVSNPGFADEFRHFRRRDTVLQRTTMGIHKDDYSFIIESGNGQP 273 Query: 283 TIA---HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + GS G+QK ++ + LA + PILLLD+I LD+ + L + + Sbjct: 274 PVPLKKFGSQGQQKTFVIALKLAQFAQLQAEKDVKPILLLDDIFDKLDDRRIGKLIQQMD 333 Query: 340 D-IGSQIFMT 348 + + Q+F+T Sbjct: 334 EGVFGQLFIT 343 >gi|145597327|ref|YP_001161402.1| recombination protein F [Yersinia pestis Pestoides F] gi|145209023|gb|ABP38430.1| DNA replication and repair protein RecF [Yersinia pestis Pestoides F] Length = 425 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 159/371 (42%), Gaps = 20/371 (5%) Query: 5 IKIKFLN-----ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59 I+I F+ I +FRN S L A VG NG GKT++LEA+ L GR FR Sbjct: 62 IRISFMALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSL 121 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 V R F RV+ E A + + + D VR I+ V EL + Sbjct: 122 QAGRVIRHECAEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQM 177 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 L + + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 178 LPMQLITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSR 236 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + + ++ L +I+ R +A+++ I P LS + F G +S Sbjct: 237 YTQIRAWDQEIIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES 294 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +Y + L + D T +GPH++D + D S G+ K+++ + Sbjct: 295 ------DYGELLARQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCAL 347 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSL 358 LA ++ +G + LLD+ ++ LD +R L + +Q+F++ + + V D + Sbjct: 348 RLAQGEFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMV 407 Query: 359 NETAKFMRISN 369 E K R+ + Sbjct: 408 GEKGKMFRVEH 418 >gi|308047725|ref|YP_003911291.1| DNA replication and repair protein RecF [Ferrimonas balearica DSM 9799] gi|307629915|gb|ADN74217.1| DNA replication and repair protein RecF [Ferrimonas balearica DSM 9799] Length = 355 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 90/351 (25%), Positives = 155/351 (44%), Gaps = 24/351 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L+I RN + L + GDNG GKT++LEAI FLS GR FR R Sbjct: 3 IDRLHIQNLRNIQAATLEPAGGLNLIYGDNGSGKTSVLEAIWFLSVGRSFRTHLAPRAIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P+ FAR E L ++ D VR IN + +L L + + Sbjct: 63 HDEPNLV-LFARTTAGEKLG---LRRGRDGDNEVR---INGERPERLADLAACLPLQLIS 115 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + RR F+D F DP+ + RL++ RN+LL + D + + Sbjct: 116 PESFALLLEGPQARREFIDWGAFHSDPQFIGIWSRYRRLLKQRNQLLRQQAPDHQF-AIW 174 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q++E G + R +++L+ + + + + P I++S + D K L Sbjct: 175 DKQLSEYGEALTAIRKRWVSSLNDTLTGIINQFLPDLP-IRVSFSQGWDSK-----SPLS 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 + +L + D T+ GPH++DL + + + + G S G+ K+++ + +A Sbjct: 229 AQIQGQL----ERDKQLGYTVSGPHKADLRLRVGN--LPVQDGLSRGQLKLLVCALKIAQ 282 Query: 304 ARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 +++ T I L+D++++ LDE R L + G Q+F+T + Sbjct: 283 GKILGQKDTSRGCIYLVDDLASELDESHRTLLLEQLISTGEQVFVTAIEPG 333 >gi|108810131|ref|YP_654047.1| recombination protein F [Yersinia pestis Antiqua] gi|108814113|ref|YP_649880.1| recombination protein F [Yersinia pestis Nepal516] gi|167401621|ref|ZP_02307115.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|51591507|emb|CAH23179.1| DNA metabolism protein [Yersinia pseudotuberculosis IP 32953] gi|108777761|gb|ABG20280.1| DNA replication and repair protein RecF [Yersinia pestis Nepal516] gi|108782044|gb|ABG16102.1| DNA replication and repair protein RecF [Yersinia pestis Antiqua] gi|167049003|gb|EDR60411.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 427 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 159/371 (42%), Gaps = 20/371 (5%) Query: 5 IKIKFLN-----ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59 I+I F+ I +FRN S L A VG NG GKT++LEA+ L GR FR Sbjct: 62 IRISFMALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSL 121 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 V R F RV+ E A + + + D VR I+ V EL + Sbjct: 122 QAGRVIRHECAEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQM 177 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 L + + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 178 LPMQLITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSR 236 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + + ++ L +I+ R +A+++ I P LS + F G +S Sbjct: 237 YTQIRAWDQEIIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES 294 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +Y + L + D T +GPH++D + D S G+ K+++ + Sbjct: 295 ------DYGELLARQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCAL 347 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSL 358 LA ++ +G + LLD+ ++ LD +R L + +Q+F++ + + V D + Sbjct: 348 RLAQGEFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMV 407 Query: 359 NETAKFMRISN 369 E K R+ + Sbjct: 408 GEKGKMFRVEH 418 >gi|197334005|ref|YP_002154783.1| DNA replication and repair protein RecF [Vibrio fischeri MJ11] gi|226737848|sp|B5FEV5|RECF_VIBFM RecName: Full=DNA replication and repair protein recF gi|197315495|gb|ACH64942.1| DNA replication and repair protein RecF [Vibrio fischeri MJ11] Length = 359 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 88/363 (24%), Positives = 164/363 (45%), Gaps = 18/363 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I++FRN + + +G NG GKT++LEAI L GR F+ + + R Sbjct: 6 LIINDFRNITTCDIQLSPGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIRNDC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F R E L ++ I + + D + ++I + + +L K L + + P Sbjct: 66 DELF-IHGRFTTPE-LFELPIGINKQRDGTTE-VKIGGESGQKLAQLAKVLPLQLIHPEG 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187 + + RR F+D VF ++P +RL + RN LL Y + S+ + Sbjct: 123 FELVTDGPKFRRAFIDWGVFHVEPAFYDAWSRVKRLTKQRNALLKTANSYRELSYW---D 179 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 ++A+L KI+ RV+ IN +S + Q P + L+ + + + E Sbjct: 180 LELAQLSEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWDRETPYA----EL 234 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 KK F+ D T+ GP+++DL + + S G+ K+++ + LA + + Sbjct: 235 LKKNFE---RDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGQHL 290 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366 + TG I L+D+ ++ LD +R L + + +Q+F++ T + + D ++ +K Sbjct: 291 TEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDDESKMFE 350 Query: 367 ISN 369 I + Sbjct: 351 IEH 353 >gi|239916574|ref|YP_002956132.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC 2665] gi|281414962|ref|ZP_06246704.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC 2665] gi|259563665|sp|C5C7X6|RECF_MICLC RecName: Full=DNA replication and repair protein recF gi|239837781|gb|ACS29578.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC 2665] Length = 404 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 87/351 (24%), Positives = 149/351 (42%), Gaps = 48/351 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +++FR+Y L T+ +G NGVGKTN++EAI +L + R +S A + R Sbjct: 3 LSHLTVADFRSYRWADLELTPGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQLVR 62 Query: 67 IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G AR+ G G +++K+E RS R +R + L LR Sbjct: 63 FG-----RDRARIAGRVHRGSRTVALKVEILPGRSNRVAINRGASVRAKEGLGI-LRTVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + +G RRR LD+++ + P D+ER++R RN LL G W Sbjct: 117 FAPEDLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSGRGSRRWGP 176 Query: 185 SIEAQMA-------ELGVKINIARVEMINALSSLIME-------------YVQKENFP-- 222 +A +A G ++ R+ ++ L+ + E Y + P Sbjct: 177 EEDATLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLA 236 Query: 223 ---HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 H ++ L ++ A +EE + TL+GPHR +L + + Sbjct: 237 RGTHAEVPAVADLATDMRRTLEAQREEERARAL-----------TLVGPHRDELAL-FLG 284 Query: 280 KAITIAHGSTGEQKVVLVGIFL-AHARLISN--TTGFAPILLLDEISAHLD 327 A + S GE + + + + A+ L+++ P+L+LD++ A LD Sbjct: 285 PAPARGYASHGETWSLALALRMAAYDVLVADDPDPDARPVLILDDVFAELD 335 >gi|282881774|ref|ZP_06290432.1| DNA replication and repair protein RecF [Peptoniphilus lacrimalis 315-B] gi|281298384|gb|EFA90822.1| DNA replication and repair protein RecF [Peptoniphilus lacrimalis 315-B] Length = 358 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 159/356 (44%), Gaps = 11/356 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + F+ + FRNY SL+L I G N GKTN+LEAI F+ D+ Sbjct: 1 MNLSFIGLYNFRNYKSLKLNTGPNINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + E + I++ TR++ ++ IN+ D + I Sbjct: 61 INF-SKNEACILGTYENNCYKDNYRIEI-TRNN--IKKYFINEQKTNSKD-FRQARHIVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I +RRRF+D + ID + + + +++ RN+LL + S Sbjct: 116 FSPVDLNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLKISK-NMSLLE 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +++++G KI I R+ I L+ ++ Q + + +L T + ++ Sbjct: 175 IYDRELSKIGSKIIIMRLIAIKELNKYANKHYQNLS-KNDRLKTTYLSTIPLSSNEEEIR 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L + D + T IGPHR D+ DK+ T A GS GEQ+ V++ + L+ Sbjct: 234 ENFYNFLKLNQYKDFQRKNTSIGPHRDDIDFKINDKS-TKAFGSQGEQRSVVLSLKLSEF 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359 LI ILLLD++ + LDE + L + D +Q F+T T+ K F +LN Sbjct: 293 DLIYKKFNDKSILLLDDVFSELDEKRTLYLLDSIKD--TQTFITTTEFKDYFKNLN 346 >gi|269103822|ref|ZP_06156519.1| DNA recombination and repair protein RecF [Photobacterium damselae subsp. damselae CIP 102761] gi|268163720|gb|EEZ42216.1| DNA recombination and repair protein RecF [Photobacterium damselae subsp. damselae CIP 102761] Length = 360 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 89/369 (24%), Positives = 160/369 (43%), Gaps = 29/369 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN A L +G NG GKT++LEA+ +L GR FR V R Sbjct: 6 LIVKDFRNIADCDLELSPSFNFLIGANGSGKTSVLEAVHYLGHGRSFRSHLTGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+G + + + D + ++I + + +L + L + + P Sbjct: 66 SELF-VHGRVQGEGTQLPQPVGINKKRDGTTE-VKIAGEGNQKLAQLAQILPLQLITPEG 123 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSIE 187 + G RR F+D VF ++P+ + +RL + RN LL Y + S+ Sbjct: 124 FDLLIGGPKFRRAFIDWGVFYVEPKFFQAWSRLKRLTKQRNALLKTATSYRELSYWDQEL 183 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKEN------FPHIKLSLTGFLDGKFDQSFC 241 AQ+AE +I++ R + + A+ QK N P + L G+ G ++ Sbjct: 184 AQLAE---QIDLWRSDYLAAVK-------QKANEICLGFLPEFDIQL-GYYRGWEKET-- 230 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 Y + L + D T GPH++DL + + S G+ K+++ + L Sbjct: 231 ----PYGELLRRNFERDCQLGYTASGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRL 285 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNE 360 A ++ TG I L+D+ ++ LD +R L + + + +Q+F++ + + D +E Sbjct: 286 AQGLHLTEVTGKQCIYLIDDFASELDSHRRALLAQRLKETHAQVFISAISADQITDMQDE 345 Query: 361 TAKFMRISN 369 K + + Sbjct: 346 KGKMFLVEH 354 >gi|270264121|ref|ZP_06192388.1| DNA replication and repair protein RecF [Serratia odorifera 4Rx13] gi|270041770|gb|EFA14867.1| DNA replication and repair protein RecF [Serratia odorifera 4Rx13] Length = 361 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 155/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEA+ L GR FR V R Sbjct: 6 LLIKDFRNIEAADLALAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F R+EG E + + + D VR I+ V EL + L + + P Sbjct: 66 PEFI-LHGRIEGAEREISVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I + P LS + F G +S +Y + Sbjct: 181 LIPLAERISEWRAAYSDAIAADITATC-AQFLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D + T +GPH++D + + S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRVLTYTAVGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD +R L + +Q+F++ + + V D E K R+ Sbjct: 292 QSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGKMFRVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|257124818|ref|YP_003162932.1| DNA replication and repair protein RecF [Leptotrichia buccalis C-1013-b] gi|257048757|gb|ACV37941.1| DNA replication and repair protein RecF [Leptotrichia buccalis C-1013-b] Length = 362 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 79/350 (22%), Positives = 156/350 (44%), Gaps = 20/350 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--I 67 ++ + FR +L FD + G NG GKT+++EA+ FL+ G+ FR ++ + + Sbjct: 6 ISFNNFRCLVDGKLKFDRYFNLIYGKNGQGKTSLIEAVHFLATGKSFRTKKVKEIRKYNL 65 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRD---DRSVRCLQINDVVIRVVDELNKHLRISW 124 F + + E + I + + +D DR + IN V + L I Sbjct: 66 NRLIVFGKYRHKDLSENIIAIDVNEDKKDFYIDRE-KNKYINYVGL---------LNIIS 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + G RR F + + + + +++FE++++ RN+L+ E Sbjct: 116 FIPEDIELIIGNPGIRRNFFNYEISQAKKEYLQSIVNFEKILKVRNKLIKEKKTGEEIYK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQSFC 241 + E G+ I + R E I LS L+ +K EN +KL FL ++ Sbjct: 176 IYNEKFIEEGLNIVLNRREFIKKLSILLNLNYRKLFDEN-SELKLKYDCFLGDVEKKTRE 234 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 LKE++ + + +L+GP + D + + K A+ S GE+K ++ + + Sbjct: 235 ELKEKFEILCRRKSEREKFLGYSLLGPQKDDFVFELNGKNAK-AYSSQGEKKSIIFSLKI 293 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + ++ PI ++D+I+++ DE ++ ++ + Q F+T T+ Sbjct: 294 SEIDILIKEKKEYPIFIMDDIASYFDEVRKKSILSYFVNKKIQCFITSTE 343 >gi|332291116|ref|YP_004429725.1| DNA replication and repair protein RecF [Krokinobacter diaphorus 4H-3-7-5] gi|332169202|gb|AEE18457.1| DNA replication and repair protein RecF [Krokinobacter diaphorus 4H-3-7-5] Length = 363 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 159/360 (44%), Gaps = 40/360 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N+ S FDA+ FVG+NGVGKTNIL+AI LS G+ SY + Sbjct: 3 LKSLSLINYKNFESKDFTFDAKINCFVGNNGVGKTNILDAIYHLSFGK-----SYFNPVT 57 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121 + + + F V G+ + + RD++ V + + ++ + H+ Sbjct: 58 SQNINHDADFFVVNGV-------YEKDGRDEKVVVSAKKGSKKVIKRNAKIYERFADHIG 110 Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----T 174 LV P+ + + S RR+F+D ++ D + ++ + +++ RN LL Sbjct: 111 FLPLVIISPADRDLITEGSDTRRKFIDGVISQSDKSYLSNLLGYSKILAQRNALLKYFAA 170 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFL 232 F++ + Q+ G I R + + + + E + H+ L+ + L Sbjct: 171 NSTFNADTLAVYNEQLEGFGTPIFEKRKQFLERFAPIFNERYKAISGGTEHVTLTYSSTL 230 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 S LK L R + + T +G H+ DL + + GS G+Q Sbjct: 231 ------SDMPLKHSLTNALAKDRSL----QYTSVGIHKDDLQFEINGHPVK-KFGSQGQQ 279 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGT 350 K L+ + LA I +G P+LLLD+I LDE + + +V D G Q+F++ T Sbjct: 280 KSYLIALKLAQFDFIKQESGTTPLLLLDDIFDKLDESRVQHIIELVNTNDFG-QLFISDT 338 >gi|213424953|ref|ZP_03357703.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 357 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 91/362 (25%), Positives = 160/362 (44%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ + EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ RVE +A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRVEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|58336358|ref|YP_192943.1| recombination protein F [Lactobacillus acidophilus NCFM] gi|227902591|ref|ZP_04020396.1| recombination protein F [Lactobacillus acidophilus ATCC 4796] gi|75507682|sp|Q5FN12|RECF_LACAC RecName: Full=DNA replication and repair protein recF gi|58253675|gb|AAV41912.1| DNA repair and genetic recombination protein [Lactobacillus acidophilus NCFM] gi|227869680|gb|EEJ77101.1| recombination protein F [Lactobacillus acidophilus ATCC 4796] Length = 375 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 157/355 (44%), Gaps = 26/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN L + FD IF+G N GKTN+LEAI FL+ R R +S D+ IG Sbjct: 6 LTVQNFRNLKKLDVDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTSSDRDL--IG- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F + + G + +++ L + + + IN + + + L P Sbjct: 63 --FDGEYTNLAGHVQKSQVTLNLRVLITKKGKKVWINRIEQAKLSKYVGQLNAILFSPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSS 185 + G RRRF+D+ I+ + + +++ +N L + D + Sbjct: 121 LELIKGAPSLRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQVFLDV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-----KLSLTGFLDGKFDQSF 240 + Q+A + ++ R + + LS + + + HI KLS+ + D + Sbjct: 181 LSDQLAGIAAELIYRRFKFLTYLS-----HYASDAYTHISLGSEKLSI-AYHPSVSDITA 234 Query: 241 CALKEEYAKKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 EE +K+ + R S R+ T GPHR D+ K + + S G+Q+ + Sbjct: 235 DDTTEEIYQKILNSFNRNKASEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIA 293 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + I LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 294 LSIKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347 >gi|262281564|ref|ZP_06059343.1| DNA replication and repair protein recF [Acinetobacter calcoaceticus RUH2202] gi|262257023|gb|EEY75762.1| DNA replication and repair protein recF [Acinetobacter calcoaceticus RUH2202] Length = 360 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 156/350 (44%), Gaps = 29/350 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66 LNI RN ++ L IF G NG GKT+ILEAI L+ GR FR +Y Sbjct: 6 LNIERVRNLKTVALQGLQPFNIFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYAA 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F + GM+ LA + +++N + +L K L + L Sbjct: 66 EDAIVFAQSSTEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHLD 114 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P I + RR+ LD ++F ++P + R ++ RN LL T + Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +++ G ++ R+ ++ + + ++ P +++ L ++ F ++ Sbjct: 175 WNKMLSDYGEILHSQRLGIVEQWNVFFQNDL-RQLLPDLEIEL------EYSPGFHT-EQ 226 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + + D R T GPHR+D L Y + + S G++K++++ + L+ Sbjct: 227 GLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPYGHADVVL---SRGQKKLLIIALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 ++ + + ++LLD+++A LD + L ++ +GSQ+FMT D + Sbjct: 284 IAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332 >gi|21961124|gb|AAM87653.1|AE014012_10 ssDNA and dsDNA binding protein [Yersinia pestis KIM 10] gi|45438596|gb|AAS64142.1| DNA metabolism protein [Yersinia pestis biovar Microtus str. 91001] Length = 440 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 159/371 (42%), Gaps = 20/371 (5%) Query: 5 IKIKFLN-----ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59 I+I F+ I +FRN S L A VG NG GKT++LEA+ L GR FR Sbjct: 75 IRISFMALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSL 134 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 V R F RV+ E A + + + D VR I+ V EL + Sbjct: 135 QAGRVIRHECAEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQM 190 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 L + + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 191 LPMQLITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSR 249 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + + ++ L +I+ R +A+++ I P LS + F G +S Sbjct: 250 YTQIRAWDQEIIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES 307 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +Y + L + D T +GPH++D + D S G+ K+++ + Sbjct: 308 ------DYGELLARQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCAL 360 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSL 358 LA ++ +G + LLD+ ++ LD +R L + +Q+F++ + + V D + Sbjct: 361 RLAQGEFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMV 420 Query: 359 NETAKFMRISN 369 E K R+ + Sbjct: 421 GEKGKMFRVEH 431 >gi|167751442|ref|ZP_02423569.1| hypothetical protein EUBSIR_02438 [Eubacterium siraeum DSM 15702] gi|167655688|gb|EDR99817.1| hypothetical protein EUBSIR_02438 [Eubacterium siraeum DSM 15702] Length = 377 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 162/372 (43%), Gaps = 43/372 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASYA 62 ++IK L + FRN F + G+N GKTN+ EAIS + P R R++SY Sbjct: 1 MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAISLCMGPSFRTSRQSSYI 60 Query: 63 DVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 + S +F+T + E L + +I ++ ++ N + I+ EL Sbjct: 61 PFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTICNNKKE------IKYNGLAIKSALEL 113 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 L+ +P + G+ RR +LD + P H +++ + + ++ +N LL Sbjct: 114 YGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFGI 173 Query: 177 YFD----------SSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIK 225 F SW S + A+ G+ + R++ + L ++ + Y + +K Sbjct: 174 NFGDDLSVIRPQIESWNSVLAAE----GLNVTYGRLKYFSLLETIASQLYNELSGGEELK 229 Query: 226 LSLTGFLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 L + FD + L EY ++L + + R T++G HR D+ + Y D Sbjct: 230 LK---YYSSIFDSTELKCEEINGLYNEYLERLNSSFQRELKMRYTVLGVHRDDMNL-YID 285 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 GS G+Q+ + + LA A +I PI++LD++ + LD ++ + + Sbjct: 286 NNDVKEFGSQGQQRSTALALKLAEAEIIRQKDE-TPIMILDDVLSELDAGRQRFVLNHI- 343 Query: 340 DIGSQIFMTGTD 351 I SQ+F+T + Sbjct: 344 -INSQVFITCCN 354 >gi|150260970|ref|ZP_01917698.1| DNA metabolism protein [Yersinia pestis CA88-4125] gi|161484720|ref|NP_671402.2| recombination protein F [Yersinia pestis KIM 10] gi|161511283|ref|NP_995265.2| recombination protein F [Yersinia pestis biovar Microtus str. 91001] gi|161760551|ref|YP_072416.2| recombination protein F [Yersinia pseudotuberculosis IP 32953] gi|162421418|ref|YP_001608446.1| recombination protein F [Yersinia pestis Angola] gi|165926115|ref|ZP_02221947.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. F1991016] gi|165936903|ref|ZP_02225469.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. IP275] gi|166009709|ref|ZP_02230607.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. E1979001] gi|166213283|ref|ZP_02239318.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. B42003004] gi|167422826|ref|ZP_02314579.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425451|ref|ZP_02317204.1| DNA replication and repair protein recF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022265|ref|YP_001718770.1| recombination protein F [Yersinia pseudotuberculosis YPIII] gi|218931072|ref|YP_002348947.1| recombination protein F [Yersinia pestis CO92] gi|229839802|ref|ZP_04459961.1| gap repair protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841887|ref|ZP_04462043.1| gap repair protein [Yersinia pestis biovar Orientalis str. India 195] gi|229896764|ref|ZP_04511927.1| gap repair protein [Yersinia pestis Pestoides A] gi|229904652|ref|ZP_04519763.1| gap repair protein [Yersinia pestis Nepal516] gi|270488363|ref|ZP_06205437.1| DNA replication and repair protein RecF [Yersinia pestis KIM D27] gi|294505623|ref|YP_003569685.1| recombination protein F [Yersinia pestis Z176003] gi|20978599|sp|Q8Z9U9|RECF_YERPE RecName: Full=DNA replication and repair protein recF gi|97181121|sp|Q663T4|RECF_YERPS RecName: Full=DNA replication and repair protein recF gi|226737852|sp|A9R5R3|RECF_YERPG RecName: Full=DNA replication and repair protein recF gi|226737853|sp|B1JGD5|RECF_YERPY RecName: Full=DNA replication and repair protein recF gi|115349683|emb|CAL22664.1| DNA metabolism protein [Yersinia pestis CO92] gi|149290378|gb|EDM40455.1| DNA metabolism protein [Yersinia pestis CA88-4125] gi|162354233|gb|ABX88181.1| DNA replication and repair protein recF [Yersinia pestis Angola] gi|165915145|gb|EDR33756.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. IP275] gi|165921975|gb|EDR39152.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. F1991016] gi|165991631|gb|EDR43932.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. E1979001] gi|166205581|gb|EDR50061.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. B42003004] gi|166958218|gb|EDR55239.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055465|gb|EDR65258.1| DNA replication and repair protein recF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748799|gb|ACA66317.1| DNA replication and repair protein RecF [Yersinia pseudotuberculosis YPIII] gi|229678770|gb|EEO74875.1| gap repair protein [Yersinia pestis Nepal516] gi|229691226|gb|EEO83279.1| gap repair protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696168|gb|EEO86215.1| gap repair protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700202|gb|EEO88238.1| gap repair protein [Yersinia pestis Pestoides A] gi|262363787|gb|ACY60508.1| recombination protein F [Yersinia pestis D106004] gi|262367724|gb|ACY64281.1| recombination protein F [Yersinia pestis D182038] gi|270336867|gb|EFA47644.1| DNA replication and repair protein RecF [Yersinia pestis KIM D27] gi|294356082|gb|ADE66423.1| recombination protein F [Yersinia pestis Z176003] gi|320017425|gb|ADW00997.1| gap repair protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 361 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 155/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L A VG NG GKT++LEA+ L GR FR V R Sbjct: 6 LLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHEC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E A + + + D VR I+ V EL + L + + P Sbjct: 66 AEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLARQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|282881520|ref|ZP_06290190.1| DNA replication and repair protein RecF [Prevotella timonensis CRIS 5C-B1] gi|281304631|gb|EFA96721.1| DNA replication and repair protein RecF [Prevotella timonensis CRIS 5C-B1] Length = 370 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 105/374 (28%), Positives = 170/374 (45%), Gaps = 41/374 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N L F ++ +G NG GKTN+L+AI +LS F R+++ + Sbjct: 3 LKKISILNYKNIEVADLEFSSKLNCLIGHNGEGKTNLLDAIYYLS----FCRSAFNPIDS 58 Query: 67 ---IGSPSFFS---TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + FFS T+ R +G E L +K TR + + ND + + E + Sbjct: 59 QLILHGRDFFSLQGTYLRDDGDEELIHCGLKRGTR-----KRFKRNDKDYKRLSEHIGLI 113 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFD 179 + ++ PS + G S ERRRFLD ++ ++ + + + + + RN LL E D Sbjct: 114 PLIFVSPSDTILIEGGSEERRRFLDMVISQLNRTYIEHLSRYNKALAQRNALLKNEDAPD 173 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S +E +MA G I R S I E++ F I S++G + + S Sbjct: 174 LSLLEILEQEMAVQGEAIFAIR-------QSFIEEFIPV--FQSIYDSISGHHE---EVS 221 Query: 240 FCALKEEYAKKLFDGRKMDSMSRR----TLIGPHRSDL---IVDYCDKAITIAHGSTGEQ 292 + L D + D M R +L G HR DL I DY K GS G+ Sbjct: 222 LQYISHAQRGPLLDVIQRDRMKDRAVGYSLHGVHRDDLQMMIGDYQMK----REGSQGQN 277 Query: 293 KVVLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGT 350 K ++ + LA + T + P+LLLD+I LD ++ + +VT QIFMT T Sbjct: 278 KTYVLALKLAQFDFLQRTSSATQPLLLLDDIFDKLDAERVERIVDLVTSTTYGQIFMTDT 337 Query: 351 DKSVFDSLNETAKF 364 +++ D + + F Sbjct: 338 NRAHLDRILSSHSF 351 >gi|315654134|ref|ZP_07907050.1| recombination protein F [Lactobacillus iners ATCC 55195] gi|315488830|gb|EFU78476.1| recombination protein F [Lactobacillus iners ATCC 55195] Length = 373 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ + Sbjct: 6 LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F A + G +I L+ + IN + + + + P Sbjct: 63 --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D I+ + + + ++++ RN L ++ D + + Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242 + Q+A L ++ RV ++ L KEN ++ LD ++ SF Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231 Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 E+ Y K L F+ +++ M TL+GPHR DL V + +K + S G+Q+ Sbjct: 232 FDEKDSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +++ I LA L+ PILLLD++ + LD ++ L + +Q F+T TD Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347 >gi|88803287|ref|ZP_01118813.1| DNA replication and repair protein RecF, ABC family ATPase [Polaribacter irgensii 23-P] gi|88780853|gb|EAR12032.1| DNA replication and repair protein RecF, ABC family ATPase [Polaribacter irgensii 23-P] Length = 359 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 95/360 (26%), Positives = 162/360 (45%), Gaps = 41/360 (11%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI LN F+N + F + FVG+NGVGKTNIL+AI +LS + SY + Sbjct: 5 KISLLN---FKNLEAQSFDFQQKINCFVGNNGVGKTNILDAIYYLSFAK-----SYFNSV 56 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKH- 119 I + ++F VEG ++ R+++ V L+ + + ++ ++H Sbjct: 57 AIQNIRHGASFFMVEG-------DYVIDHRNEKIVCSLKKGQKKVLKRNGKSYEKFSEHI 109 Query: 120 --LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---- 173 L + + P+ + + S RR+F+D ++ + + ++ + +++ RN LL Sbjct: 110 GQLPLVIISPADRDLVTEGSDTRRKFIDGVISQQNKNYLLDLLAYNKVLTQRNALLKYFA 169 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGF 231 FD+ S +AQ++E G +I R + + E Q + + L Sbjct: 170 ANRTFDALNLSVYDAQLSEYGTRIYEVRKAFLEKFIPIFNEKYQVISNDKERVDLVYKSQ 229 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 L+ D S +L ++ +K D + + T G H+ DL + D I GS G+ Sbjct: 230 LN---DFSMNSLLQKSLEK-------DKILQYTTAGTHKDDLSFEIGDYPIK-KFGSQGQ 278 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGT 350 QK L+ + A I + PILLLD+I LDE + + +V D QIF+T T Sbjct: 279 QKSYLIALKFAQFEFIKQQSNVVPILLLDDIFDKLDESRVLQIINLVNNDEFGQIFITDT 338 >gi|146297979|ref|YP_001192570.1| DNA replication and repair protein RecF [Flavobacterium johnsoniae UW101] gi|189039624|sp|A5FNH5|RECF_FLAJO RecName: Full=DNA replication and repair protein recF gi|146152397|gb|ABQ03251.1| DNA replication and repair protein RecF [Flavobacterium johnsoniae UW101] Length = 359 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 90/350 (25%), Positives = 153/350 (43%), Gaps = 26/350 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ ++N++ FD + FVG NG+GKTN+L+AI L+ G+ + + G Sbjct: 6 LSLFNYKNFSEAGFDFDIKINCFVGKNGIGKTNVLDAIYHLAYGKSYFNPLAVQNIKHGE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV--- 126 FF A +E + I L+ + L+ N + D+ + H+ LV Sbjct: 66 -EFFVIDAELEKNDRTEQIVCSLKKGQK---KVLKRNG---KAYDKFSDHIGFIPLVIIS 118 Query: 127 PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSS 181 P+ D I G S RR+F+D ++ +D + ++I +++++ RN LL FD+ Sbjct: 119 PADRDLIVEG-SETRRKFMDSVISQLDSTYLHQLIQYQKVIVQRNALLKYFALNHTFDND 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 S Q+ E G I R E + + + Q + L + F++ Sbjct: 178 TLSIYNEQLNEFGKSIFEKRKEFLEEFIPIFNVHHQAITGSEESVQLV-YESHLFEKDLL 236 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L +E K D T G H+ DL + D GS G+QK L+ + L Sbjct: 237 TLLQENINK-------DRALHYTSSGIHKDDLSFE-IDSHPIKKFGSQGQQKSFLIALKL 288 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGT 350 A + +G PILL D+I LDE + + +V ++ Q+F++ T Sbjct: 289 AQFEFLKKQSGVKPILLFDDIFDKLDETRVAKIVEMVNSETFGQLFISDT 338 >gi|163838773|ref|YP_001623178.1| recombination protein F [Renibacterium salmoninarum ATCC 33209] gi|189039634|sp|A9WR32|RECF_RENSM RecName: Full=DNA replication and repair protein recF gi|162952249|gb|ABY21764.1| DNA replication and repair protein [Renibacterium salmoninarum ATCC 33209] Length = 398 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 97/396 (24%), Positives = 167/396 (42%), Gaps = 41/396 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++++FR+Y L + +F+G NG+GKTN++EA+ +L+ R + + R Sbjct: 3 LEQLSLTDFRSYQQADLGLEPGVNVFIGSNGLGKTNLVEALGYLASLSSHRVSQDGPLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ V G + L + +++ R + N V R E+ R Sbjct: 63 FGAEQALIRGNLVRGTQRLG-LEVEINASRANRARINRANPVRAR---EILGLCRTVLFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS------ 180 P + G RRRFLD ++ ++ PR D+ER+++ RN LL S Sbjct: 119 PEDLSLVKGDPGNRRRFLDDLLQSLHPRFAGLRADYERVLKQRNALLKSARGHSRSRQAP 178 Query: 181 --SWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLT 229 + S+IE A ++ AR++++ L + Q KE + SL Sbjct: 179 SADFLSTIEVWDQHFANHAAQLLSARLKVLEQLKPEMSRAYQELTDGSKELSARYRSSLD 238 Query: 230 GFLDGKFD--------------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 G+ + D S +L E Y L R+ + TLIGPHR ++ + Sbjct: 239 GYQEDSDDAAEIHDDEAASLVSASVESLTEHYLLALAAVRQREIERGLTLIGPHRDEVEL 298 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDEDKRN 332 +A + S GE V + + LA ++ G PIL+LD++ A LD +R+ Sbjct: 299 G-LGQAPARGYASHGETWSVALALRLASYYVLKADQEIDGADPILVLDDVFAELDSSRRS 357 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 L +V + D V L + + +R+S Sbjct: 358 KLAHMVAGAEQVLVTAAVDDDVPAEL--SGRRIRVS 391 >gi|269962693|ref|ZP_06177038.1| recF protein [Vibrio harveyi 1DA3] gi|269832616|gb|EEZ86730.1| recF protein [Vibrio harveyi 1DA3] Length = 359 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 161/365 (44%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + V + Sbjct: 6 LIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF +P F+RL + RN LL Y + S+ Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R I + S + E + + P ++ L + D + Sbjct: 179 -DQEMARLAENISQWRALYIEQMKS-VAETICQTFLPEFEIQLKYYRGWDKDTPY----H 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E +K F+ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 233 EILEKNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++T K Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDTGKL 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|309804122|ref|ZP_07698203.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 11V1-d] gi|309809779|ref|ZP_07703633.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN 2503V10-D] gi|308163890|gb|EFO66156.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 11V1-d] gi|308169958|gb|EFO71997.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN 2503V10-D] Length = 373 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ + Sbjct: 6 LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F A + G +I L+ + IN + + + + P Sbjct: 63 --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D I+ + + + ++++ RN L ++ D + + Sbjct: 121 LSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242 + Q+A L ++ RV ++ L KEN ++ LD ++ SF Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231 Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 E+ Y K L F+ +++ M TL+GPHR DL V + +K + S G+Q+ Sbjct: 232 FDEKDSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +++ I LA L+ PILLLD++ + LD ++ L + +Q F+T TD Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347 >gi|256823909|ref|YP_003147869.1| DNA replication and repair protein RecF [Kytococcus sedentarius DSM 20547] gi|256687302|gb|ACV05104.1| DNA replication and repair protein RecF [Kytococcus sedentarius DSM 20547] Length = 390 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 92/388 (23%), Positives = 164/388 (42%), Gaps = 32/388 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + +FR+Y L A T+FVG NG GKTN++EA +L+ R +S + Sbjct: 1 MRLRHLAVRDFRSYEQADLDLPAGVTVFVGRNGQGKTNLVEAAGYLATLGSHRVSSDQPL 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R+G+ + +G E + ++L+ R+ R V R D L LR Sbjct: 61 VRVGAEHAIIRGAVDHDGRETV----LELQINPGRANRAQLGRSPVPRARDVLGT-LRTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 P + G RR FLD ++ A PR D+ + ++ RN LL + Sbjct: 116 LFAPEDLALVKGDPAGRRAFLDALLVARQPRWAGVQADYAQALKQRNALLRDVRASRSAP 175 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT---GFL 232 + + + +A G + AR+ ++ L + + ++ + + LT + Sbjct: 176 SSSTVAMLEAWDEHLAVGGASLLYARLRLVQDLRRFVEKAYRQVSEAASEAGLTYRWSLV 235 Query: 233 DGKFDQSFCAL-------KEEYAKKLFDGRKMDSMSRR------TLIGPHRSDLIVDYCD 279 + D + L + + +LF + +M +R TL+GPHR DL + Sbjct: 236 GDEADAALSGLTGGGPVPERDDLARLFSA-SLGAMRQRELERGITLVGPHRDDLDL-TLG 293 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + S GE + + + LA L+ G P+L+LD++ A LD +R L +V Sbjct: 294 PVPAKGYASHGESWSLALSLRLAAFELLRTDLGTDPVLVLDDVFAELDTGRRERLAELVA 353 Query: 340 DIGSQIFMTGTDKSVFDSLNETAKFMRI 367 D + + V +L E A + + Sbjct: 354 DAEQVLVTAAVETDVPQTLRERAHHVDV 381 >gi|300866238|ref|ZP_07110950.1| DNA replication and repair protein recF [Oscillatoria sp. PCC 6506] gi|300335757|emb|CBN56110.1| DNA replication and repair protein recF [Oscillatoria sp. PCC 6506] Length = 395 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 100/397 (25%), Positives = 184/397 (46%), Gaps = 69/397 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ +++ +FRNY +++FDA TI VG+N GK+N+LEA+ LS + R D+ Sbjct: 3 LRSIHLRQFRNYRDQKVIFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRATRDRDLIL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P A +E G+ D+++ L + R+V +N + L +HL ++ Sbjct: 63 DAKP-IGQIDASLERQTGIIDLTLTLRNQGRRTV---GLNG------EPLRRHLDFLSVL 112 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----- 173 ++ FS L ++ RR ++DR+V ++P + + + +++R RN L Sbjct: 113 NTVQ--FSSLDLDLVRGSPEHRRDWIDRLVTQLEPVYAHILQQYNQILRQRNAFLRREKE 170 Query: 174 --------TEGYFD--SSWCSSI--------EAQMAELGVKINIARVEMINALSSLIMEY 215 T Y +++ S I +AQ+A G ++ R ++ L L + Sbjct: 171 QANKGELPTTNYQSPITNYQSPITNSELALWDAQLATAGARVIRRRDRVLERLIPLAQSW 230 Query: 216 VQKENFPHIKLSLTG---FLDGKFDQSFCALKEEYAKKLFDGRK---MDSMSRR------ 263 + S++G LD K+ + ++E A+ +G + +D + R Sbjct: 231 HR---------SISGSMEVLDVKYIPNVEVIQELIARDRLEGVRQAFLDKIRERAIAEYY 281 Query: 264 ---TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320 TL+GPHR D I + +GS G+Q+ +++ + LA +LI G P+LLLD Sbjct: 282 QGTTLVGPHRDD-ISFTINNTPARQYGSQGQQRTLVLALKLAELQLIEEVVGEPPLLLLD 340 Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 ++ A LD +++N L + + Q +T T FD+ Sbjct: 341 DVLAELDLNRQNQLLETIQE-RFQTLITTTHLGAFDA 376 >gi|146295088|ref|YP_001178859.1| DNA replication and repair protein RecF [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408664|gb|ABP65668.1| DNA replication and repair protein RecF [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 349 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 95/359 (26%), Positives = 153/359 (42%), Gaps = 27/359 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + + FRN+ F + +G N GKTN+LEAI F G+ F+ D Sbjct: 3 IKSIYLENFRNHNERFFEFKDGINLILGKNASGKTNLLEAIYFCLCGKSFKS---KDTNL 59 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISWL 125 I SF S + ++E D+ + DR + + IN+ I + EL + + + Sbjct: 60 I---SFDSEYFKLEASVLANDVEYGILCYVDRLGQKRIMINEKKINRLSELIEKFKFVYF 116 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + RR+FLD V + P + D+++ + RN L + Y Sbjct: 117 EPDSTELIKQDPKVRRKFLDMEVAKLYPYMIKTFQDYQKALMSRNAFL-KSYDKKDIIDV 175 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++++LG +I R E I LS E K E+ I + + + Sbjct: 176 YDIELSKLGCQILKKREETIKRLSEATKEIWYKVFEDKSTIDIVFRPSIPS-------SS 228 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +EEY +L + D T G HR D V + + + S G+ K + I LA Sbjct: 229 EEEYYSQLKKQFEKDVQMGFTTKGVHRDDFDV-FINGQNAKEYASEGQIKFACIAISLAS 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 A+L P+LLLD+I + LD +KR + ++ D Q +T D+ DSL +T Sbjct: 288 AKLFEK-----PVLLLDDIFSELDSEKRKNVLKLCKDY--QAIITSADEK--DSLVKTG 337 >gi|296330040|ref|ZP_06872524.1| recombination protein F [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672702|ref|YP_003864373.1| recombination protein F [Bacillus subtilis subsp. spizizenii str. W23] gi|296153079|gb|EFG93944.1| recombination protein F [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410945|gb|ADM36063.1| recombination protein F [Bacillus subtilis subsp. spizizenii str. W23] Length = 370 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 82/374 (21%), Positives = 165/374 (44%), Gaps = 22/374 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ R Sbjct: 3 IQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG + +I ++ + + ++N + + + + L Sbjct: 63 -----WDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRFLD + + P + + +++++ RN L T D + Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDRTM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDGKF 236 + Q+ E+ K+ + R++ L ++ Q + L L+ Sbjct: 178 LDVLTDQLVEVAAKVVVKRLQFTAQLE----KWAQPIHAGISRGLEELTLKYHTALEVSD 233 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + + + Y + R+ + TL GPHR D++ Y + +GS G+Q+ Sbjct: 234 PKDLSKIGDSYQEAFSKLREKEIERGITLSGPHRDDVLF-YVNGRDVQTYGSQGQQRTTA 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVF 355 + + LA LI G PILLLD++ + LD+ +++ L + + + + T D Sbjct: 293 LSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDH 352 Query: 356 DSLNETAKFMRISN 369 ++L + F R+ N Sbjct: 353 ETLRQAGMF-RVQN 365 >gi|86133307|ref|ZP_01051889.1| DNA replication and repair protein RecF [Polaribacter sp. MED152] gi|85820170|gb|EAQ41317.1| DNA replication and repair protein RecF [Polaribacter sp. MED152] Length = 359 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 159/359 (44%), Gaps = 44/359 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ F+N AS F + FVG+NGVGKTN+L+AI +LS + SY + + + Sbjct: 6 LSLVNFKNIASQSFDFQEKINCFVGNNGVGKTNVLDAIYYLSFTK-----SYFNSVAVQN 60 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHL---R 121 +F +EG L D R + V L+ I + D + H+ Sbjct: 61 IKHNESFFMIEGNYLLND-------RKETIVCSLKKGQKKILKRNGKTYDRFSDHIGQFP 113 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGY 177 I + P+ + + S RR+F+D ++ + + + +I + +++ RN LL Sbjct: 114 IVIISPADRDLVTEGSDLRRKFIDGVISQQNKSYLKDLIGYNKVLTQRNALLKYFAANRT 173 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENFPHIKLSLTGFL 232 FD+ S + Q+++ G KI R + + E + KEN + L+ L Sbjct: 174 FDALNLSVYDEQLSDFGTKIYEVRRHFLEEFIPIFNEKYKVISGDKEN---VNLNYKSQL 230 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 D S L ++ +K D + + + G H+ DL + D I GS G+Q Sbjct: 231 H---DFSMPDLLQKSLEK-------DKILQYSTSGIHKDDLNFEIGDYPIK-KFGSQGQQ 279 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGT 350 K L+ + LA I PILLLD+I LDE++ + +V D QIF+T T Sbjct: 280 KSYLIALKLAQFEFIKQQAKITPILLLDDIFDKLDENRVAQIIDLVNNDEFRQIFITDT 338 >gi|309811297|ref|ZP_07705084.1| DNA replication and repair protein RecF [Dermacoccus sp. Ellin185] gi|308434604|gb|EFP58449.1| DNA replication and repair protein RecF [Dermacoccus sp. Ellin185] Length = 440 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 96/383 (25%), Positives = 166/383 (43%), Gaps = 49/383 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L++ +FR+Y + T FVG NG GKTN++EA +L+ R ++ A + Sbjct: 1 MRLRHLSLRDFRSYTEAEVELADGVTTFVGLNGQGKTNLVEAAGYLATLGSHRVSTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F A V + ++LE R+ R R D L LR Sbjct: 61 VRFGAERAFVRAAVVRDSH---ETVLELEIIPGRANRARIGRAAAGRPRDILGS-LRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G ERRRFLD ++ A PR D++++++ RN LL S S Sbjct: 117 FAPEDLALVKGDPGERRRFLDDLLVARQPRWAGARSDYDKILKQRNALL------RSAQS 170 Query: 185 SIE--AQMAELGVKINIARVEMINAL-----------SSLIMEYVQ--KENFPHIKLSLT 229 +++ A+ A L ++R ++ L S+L+ ++ K+ P++ + Sbjct: 171 ALKKGARGARLSADQEVSRETALDTLVEWNTHLASVGSALVYARLRLLKDLAPYVAQAYD 230 Query: 230 GFLDGKFDQSFC---ALKEEYAKKLFDGR--KMDSMSRR-----------------TLIG 267 G+ D +L E A ++ G + D + + TL+G Sbjct: 231 EVSAGRSDARLAYVSSLPESTAARIASGEVPERDELEKAFHEAFELQRTREIERGVTLVG 290 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 PHR D+ + D + S GE + + LA L+ + G P+L+LD++ A LD Sbjct: 291 PHRDDVTLTLGDLPAK-GYASHGESWSFALALRLAAFHLLRHDLGTDPVLVLDDVFAELD 349 Query: 328 EDKRNALFRIVTDIGSQIFMTGT 350 +R L +V+D Q+ +T Sbjct: 350 AGRRERLADMVSD-AEQVLITAA 371 >gi|145628067|ref|ZP_01783868.1| recombination protein F [Haemophilus influenzae 22.1-21] gi|144979842|gb|EDJ89501.1| recombination protein F [Haemophilus influenzae 22.1-21] Length = 359 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 161/367 (43%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLNFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I E + P ++++++ F Q + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALCPEI-EQTCRLFLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +YA+ L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 TDYAEVLEQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362 + I L+D+ ++ LD+ KR L + GSQ+F+T K + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|153947001|ref|YP_001403093.1| recombination protein F [Yersinia pseudotuberculosis IP 31758] gi|166918727|sp|A7FPB5|RECF_YERP3 RecName: Full=DNA replication and repair protein recF gi|152958496|gb|ABS45957.1| DNA replication and repair protein recF [Yersinia pseudotuberculosis IP 31758] Length = 361 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 155/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L A VG NG GKT++LEA+ L GR FR V R Sbjct: 6 LLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHEC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E A + + + D VR I+ V EL + L + + P Sbjct: 66 AEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|150026041|ref|YP_001296867.1| DNA replication and repair protein RecF [Flavobacterium psychrophilum JIP02/86] gi|226737800|sp|A6H141|RECF_FLAPJ RecName: Full=DNA replication and repair protein recF gi|149772582|emb|CAL44065.1| DNA replication and repair protein RecF [Flavobacterium psychrophilum JIP02/86] Length = 359 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 91/362 (25%), Positives = 162/362 (44%), Gaps = 44/362 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVT 65 +K +++ F+N++ F+ + FVG NGVGKTN+L+AI LS G+ F + ++ Sbjct: 3 LKKISLFNFKNFSDTSFNFEHKINCFVGKNGVGKTNVLDAIYHLSFGKSYFNTLAVQNIK 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF + E +I L+ + L+ N ++ ++ + HL L Sbjct: 63 H--DEDFFVIDGEFDKQERSENILCSLKKGQK---KILKRNG---KIYEKFSDHLGFIPL 114 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYF 178 V P+ + S RR+F+D ++ +D ++ + +I +++++ RN LL F Sbjct: 115 VIISPTDADLIREGSETRRKFIDSVISQLDNQYLQGLILYQKVLSQRNALLKYFAVNRIF 174 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKF 236 ++ Q+ +LG I R + +N + + Q + ++L L+ Sbjct: 175 ETGTLDIYNEQLNDLGQSIFEKRKQFLNDFIPIFNSFYQNISNSAETVQLEYESQLEK-- 232 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH------GSTG 290 Q +L +E K D + T +G H+ DL + IAH GS G Sbjct: 233 -QDLLSLLQENINK-------DRSLQYTSVGVHKDDL-------SFNIAHYPIKKFGSQG 277 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMT 348 +QK L+ + LA + +G PILL D+I LDE + + +V D G Q+F++ Sbjct: 278 QQKSFLIALKLAQFEFVKKQSGEKPILLFDDIFDKLDETRVEKIVAMVNNDDFG-QLFIS 336 Query: 349 GT 350 T Sbjct: 337 DT 338 >gi|148927274|ref|ZP_01810844.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] gi|147887333|gb|EDK72787.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] Length = 351 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 86/343 (25%), Positives = 154/343 (44%), Gaps = 13/343 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FR+Y + TI G NG GKTN+LEA+ L+ G F RAS ++ +IG Sbjct: 5 LRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSF-RASDQELGQIGM 63 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 ++ AR+ E SI E + ++ V + + +K L + P Sbjct: 64 -DWWRLDARLVANESR---SILFEAEKTTGRKTFILDGVKKQRLTYQHK-LPVVLFEPGD 118 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 R+ G RR F+D ++ ++P + + ++R+++ RN LL + + Sbjct: 119 LRLLHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDVA 178 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 ++E G +I R + L++ + E + H K ++ L F + ++++ Sbjct: 179 LSEYGARIVAERQKYSALLNASLRE--RYRAIAHTKDIVS--LAYSFQEGAESVQQAMVS 234 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L D T +GPHR DLI D +A +IA S GE + +++ + ++ Sbjct: 235 ALHAHHVRDKALGYTTVGPHRHDLIFSMNDVEATSIA--SRGETRSIVLALKFIEVEMLR 292 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 P+LLLD++ + LD +R AL + + + I T D Sbjct: 293 VYRDQPPLLLLDDVFSELDSTRRMALVEVGSSTQTVITTTNAD 335 >gi|291531946|emb|CBK97531.1| recF protein [Eubacterium siraeum 70/3] Length = 377 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 164/375 (43%), Gaps = 49/375 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASYA 62 ++IK L + FRN F + G+N GKTN+ EAIS + P R R++SY Sbjct: 1 MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAISLCMGPSFRTSRQSSYI 60 Query: 63 DVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 + S +F+T + E L + +I ++ ++ N + I+ EL Sbjct: 61 PFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTICNNKKE------IKYNGLSIKSALEL 113 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 L+ +P + G+ RR +LD + P H +++ + + ++ +N LL Sbjct: 114 YGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFGI 173 Query: 177 YFD----------SSWCSSIEAQMAELGVKINIARVEMINAL----SSLIMEYVQKENFP 222 F SW S + A+ G+ + R++ + L S L E EN Sbjct: 174 NFSDDLSVIRPQIESWNSVLAAE----GLNVTYGRLKYFSLLETIASQLYNELSGGEN-- 227 Query: 223 HIKLSLTGFLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 L+L + FD + +L EY ++L + + + R T++G HR D+ + Sbjct: 228 ---LTLK-YYSSIFDSTELKCEEINSLYNEYLERLNNSFQRELKMRYTVLGVHRDDMNL- 282 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 Y D GS G+Q+ + + LA A +I PI++LD++ + LD ++ + Sbjct: 283 YIDNNDVKEFGSQGQQRSTALALKLAEAEIIRQKDE-TPIMILDDVLSELDAGRQRFVLN 341 Query: 337 IVTDIGSQIFMTGTD 351 + I SQ+F+T + Sbjct: 342 HI--INSQVFITCCN 354 >gi|238750287|ref|ZP_04611789.1| DNA replication and repair protein recF [Yersinia rohdei ATCC 43380] gi|238711520|gb|EEQ03736.1| DNA replication and repair protein recF [Yersinia rohdei ATCC 43380] Length = 361 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIESADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F RV+ E + + + D VR I+ V EL + L + + P Sbjct: 66 PEFV-LHGRVDANERESSVGLSKSRLGDSKVR---IDGTDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 181 IIPLAERISEWRAAYSDAMAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|157368283|ref|YP_001476272.1| recombination protein F [Serratia proteamaculans 568] gi|166918726|sp|A8G7Q4|RECF_SERP5 RecName: Full=DNA replication and repair protein recF gi|157320047|gb|ABV39144.1| DNA replication and repair protein RecF [Serratia proteamaculans 568] Length = 361 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 154/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEA+ L GR FR V R Sbjct: 6 LLIKDFRNIEAADLALAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F R++G E + + + D VR I+ V EL + L + + P Sbjct: 66 PEFI-LHGRIDGAEREISVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I + P LS + F G +S +Y + Sbjct: 181 LIPLAERISEWRAAYSDAIAADITATC-AQFLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD +R L + +Q+F++ + + V D E K R+ Sbjct: 292 QSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGKMFRVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|255326479|ref|ZP_05367561.1| DNA replication and repair protein RecF [Rothia mucilaginosa ATCC 25296] gi|255296519|gb|EET75854.1| DNA replication and repair protein RecF [Rothia mucilaginosa ATCC 25296] Length = 409 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 94/374 (25%), Positives = 159/374 (42%), Gaps = 50/374 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +++ ++R YA L L A T+F+G NGVGKTNI+EAI + + R + + R Sbjct: 3 IDHISLLDYRTYALLSLPLSAGVTVFLGSNGVGKTNIVEAIDYAASLSSHRVSHDGPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ + R + G + E +S R ++IN E R Sbjct: 63 AGAS---RAYIRTRTVRGSQQTVTEFEIAPGQSNR-VRINRAAPVRAKEALGIARTVLFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS------ 180 P ++ G RRRF+D + ++ P ++ER++R RN LL + Sbjct: 119 PEDLQLVKGDPAGRRRFVDDLASSLRPVVSGYRSEYERILRQRNSLLKSMQRKARDENAL 178 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S S + Q++ LG ++ AR ++ P ++ + G DG + F Sbjct: 179 STLSVWDEQLSTLGAQLLSARFRLLQRF------------LPQLRRAYAGLTDGSKEVGF 226 Query: 241 -----------------CALK--EEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDY 277 AL E+ + L G R+ D + R TL+GPHR D+ + Sbjct: 227 NYESTVFSSMGERSIEHAALMRIEDLKEALMRGFAERRRDEIERGVTLVGPHREDITLLL 286 Query: 278 CDKAIT--IAHGSTGEQKVVL-VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 + +HG + + L + + H ++ G +PIL+LD++ A LD +R+ L Sbjct: 287 GGMPVKHFASHGESWSFALALKLASWFVHVE-DDSSAGSSPILILDDVFAELDSARRHRL 345 Query: 335 FRIVTDIGSQIFMT 348 +V D Q+ +T Sbjct: 346 GVMVAD-AEQVLIT 358 >gi|262374721|ref|ZP_06067993.1| recombinational DNA repair ATPase [Acinetobacter junii SH205] gi|262310377|gb|EEY91469.1| recombinational DNA repair ATPase [Acinetobacter junii SH205] Length = 360 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 89/365 (24%), Positives = 158/365 (43%), Gaps = 34/365 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASY 61 ++I LNI RN ++ L IF G NG GKT+ILE+I L+ GR FR Y Sbjct: 1 MQITRLNIERVRNLKTVALTELQPFNIFYGANGSGKTSILESIHLLATGRSFRTHIPKHY 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + F + GM+ L + +++N I +L K L Sbjct: 61 IQHQCNDAIVFAQSATERVGMKKLIS-----------GEQLIKVNGDTIATQGQLAKLLP 109 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDS 180 + + P I + RR+ LD ++F ++P + R ++ RN LL T Sbjct: 110 LQHIDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNSLLKTRRNLSL 169 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S ++E G ++ R+ ++ + E +Q + P I + L + +Q Sbjct: 170 SELEPWNKMLSEYGEILHSQRISIVEQWNQYFREDLQ-QLLPDIDIELEYYSGFHTEQGL 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY----CDKAITIAHGSTGEQKVVL 296 + L + D R T GPHR+DL + D + S G++K+++ Sbjct: 229 F-------QDLIQQHQKDLERRYTEYGPHRADLRLKTPQGNADDVL-----SRGQKKLLI 276 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVF 355 + + L+ ++ + + ++LLD+++A LD + L ++ +GSQ+F+T D SV Sbjct: 277 MALKLSQIAML-HASNKETVVLLDDLTAELDVAAQQRLIERLSQLGSQVFLTTLDHASVL 335 Query: 356 DSLNE 360 L++ Sbjct: 336 KHLHD 340 >gi|291558316|emb|CBL35433.1| Recombinational DNA repair ATPase (RecF pathway) [Eubacterium siraeum V10Sc8a] Length = 377 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 163/375 (43%), Gaps = 49/375 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASYA 62 ++IK L + FRN F + G+N GKTN+ EAIS + P R R++SY Sbjct: 1 MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAISLCMGPSFRTSRQSSYI 60 Query: 63 DVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 + S +F+T + E L + +I ++ ++ N + I+ EL Sbjct: 61 PFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTICNNKKE------IKYNGLAIKSALEL 113 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 L+ +P + G+ RR +LD + P H +++ + + ++ +N LL Sbjct: 114 YGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFGI 173 Query: 177 YFD----------SSWCSSIEAQMAELGVKINIARVEMINAL----SSLIMEYVQKENFP 222 F SW S + A+ G+ + R++ + L S L E EN Sbjct: 174 NFGDDLSVIRPQIESWNSVLAAE----GLNVTYGRLKYFSLLETIASQLYNELSGGEN-- 227 Query: 223 HIKLSLTGFLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 L+L + FD + L EY ++L + + + R T++G HR D+ + Sbjct: 228 ---LTLK-YYSSIFDSTELKCEEINGLYNEYLERLNNSFQRELKMRYTVLGVHRDDMNL- 282 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 Y D GS G+Q+ + + LA A +I PI++LD++ + LD ++ + Sbjct: 283 YIDNNDVKEFGSQGQQRSTALALKLAEAEIIRQKDE-TPIMILDDVLSELDAGRQRFVLN 341 Query: 337 IVTDIGSQIFMTGTD 351 + I SQ+F+T + Sbjct: 342 HI--INSQVFITCCN 354 >gi|169632032|ref|YP_001705768.1| recombination protein F [Acinetobacter baumannii SDF] gi|259563351|sp|B0VMK2|RECF_ACIBS RecName: Full=DNA replication and repair protein recF gi|169150824|emb|CAO99424.1| DNA replication, recombinaison and repair protein [Acinetobacter baumannii] Length = 360 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 158/360 (43%), Gaps = 49/360 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66 LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR +Y Sbjct: 6 LNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYEA 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F + GM+ LA + +++N + +L K L + + Sbjct: 66 DDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P I + RR+ LD ++F ++P + R ++ RN LL T + Sbjct: 115 PQSTEIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174 Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 ++ G ++ R+ ++ N LS L+ P +++ L ++ Sbjct: 175 WNKMLSNYGEILHSQRLSIVEQWNVYFQNDLSQLL---------PDLEIEL------EYS 219 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL----IVDYCDKAITIAHGSTGEQK 293 F ++ + L + + D R T GPHR+DL + + D + S G++K Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTLFGHADDVL-----SRGQKK 273 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 ++++ + L+ ++ + + ++LLD+++A LD + L ++ +GSQ+FMT D++ Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDRA 332 >gi|88854502|ref|ZP_01129169.1| recombination protein F [marine actinobacterium PHSC20C1] gi|88816310|gb|EAR26165.1| recombination protein F [marine actinobacterium PHSC20C1] Length = 387 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 99/369 (26%), Positives = 166/369 (44%), Gaps = 34/369 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + +++ +FRNY L L + T+ VG NG GKTN++EA+ FLS R ++ + R Sbjct: 3 VTHVDLKDFRNYKGLTLELSSGPTLIVGSNGQGKTNLVEALGFLSTLGSHRVSTDHAMVR 62 Query: 67 IGSPSFFSTFARVEGMEG--LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ + R+E E LA++ I + +R+ QIN VIR EL ++ Sbjct: 63 QGTDAAI-VRVRLEHNERKFLAEVQIN-RSGANRA----QINRSVIR-TRELPRYFSSVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180 P + G RRRF+D ++ PR + D+ER+++ RN LL G D+ Sbjct: 116 FAPEDLALVRGEPSGRRRFIDDLLVLRSPRFSGVIADYERVVKQRNMLLKSARASGIRDA 175 Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKF 236 S + ++ E G +I AR ++ LS + + ++ SL L + Sbjct: 176 NLSTLDVWDERLIEFGAEIISARSALVANLSPEVAKAYERIVGADHGASLANSLSIISRQ 235 Query: 237 DQSFCALKEE--------------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 D + A+ + L RK++ TL+GPHR DLI + Sbjct: 236 DDAESAVATNDVGEIISVADATTAFTAALESVRKVERDRAITLVGPHRDDLIFG-LNGLP 294 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + LA A L+ ++ P+L+LD++ A LD+ +R L + + Sbjct: 295 ARGYASHGESWSFALSLKLASAELLRRDSAAGDPVLILDDVFAELDKSRRERLADSIANF 354 Query: 342 GSQIFMTGT 350 Q+ +T Sbjct: 355 -EQVLITAA 362 >gi|217966464|ref|YP_002351970.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM 6724] gi|217335563|gb|ACK41356.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM 6724] Length = 340 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 81/348 (23%), Positives = 148/348 (42%), Gaps = 32/348 (9%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ I+ + + FRN++ + F + G NG GKT+ILEA+++LS R FR A Sbjct: 5 RMVIESIYLRNFRNFSDFKTNFKDGINVIYGPNGSGKTSILEAVAYLSNPRSFRGARDHQ 64 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---RVVDELNKHL 120 + ++G FF ++ +I+I + + + ++ + R + E+ + Sbjct: 65 LIKLGE-KFFEINGKILSGNESHEITISYHHDEIKKEKIAYLDGFKVKRFRDIQEIFIAI 123 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 S+ +M G + +RR F D + +D + + ++E+L+ RN LL E D Sbjct: 124 PFSFKDYAM---IDGYATQRRDFFDDIFSLLDLEYYEILRNYEKLLDERNDLLKEENIDR 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + +M L KI R MI LS +LD F + Sbjct: 181 DYVIYLAKEMQPLAEKIVEKRETMIKELSK--------------------YLDPMFKVEY 220 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + E K + D + D T +GPH D Y S G+++++ + + Sbjct: 221 IS--EFKGKNIVDYIEEDIARGITTVGPHVHDDYTFYYKGNPAKYFASEGQKRLLYLSLV 278 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 LA +LI T + P+ L D+ LD + L + ++ + Q+ + Sbjct: 279 LAFRKLIEETKLYEPVFLFDDPVNVLDP---HLLEKFISHLSGQVIIA 323 >gi|313902782|ref|ZP_07836179.1| DNA replication and repair protein RecF [Thermaerobacter subterraneus DSM 13965] gi|313466902|gb|EFR62419.1| DNA replication and repair protein RecF [Thermaerobacter subterraneus DSM 13965] Length = 377 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 157/371 (42%), Gaps = 43/371 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + +FR+Y L D+ T+ G NG+GKTN+LEAI F + GR R D+ R Sbjct: 3 IRRVVLRQFRSYEQATLELDSGLTLLAGPNGIGKTNLLEAIHFAATGRSPRTTRDTDLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+P + RVE + +A + + + L+++ + + +L L I + Sbjct: 63 HGAP---LAYVRVEWDDPVAGRRVVEMALHRQHGKALRLDGRKRQRLADLQGALPIVYFA 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183 P + RR FLD ++ + P + + + D++R++ RN+LL E G S Sbjct: 120 PESLALVKAGPAARRGFLDDLLGQLVPGYTQLLHDYQRVLAQRNQLLREIRAGRAAGSLL 179 Query: 184 SSIEAQMAELGVKINIAR-------------------VEMINALSSLIMEYVQKENFPHI 224 + + + G I R L ++Y+ E Sbjct: 180 AIWDEPLYRHGQAIRQRRRRLLDELAPLAAAAAGRVAAGGAAGAGVLELDYLAAEP---- 235 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 DG+ + + E A F ++ + TL GP R D + + D Sbjct: 236 --------DGRVEGGAVSSPEGLAA--FHREEVARGT--TLWGPQRDDFAL-FLDGQDAR 282 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 A S G+Q+ + + + LA LI G P+LLLD++ + LD +R L V D+ Q Sbjct: 283 AFASQGQQRALALALTLAQVELIHRRLGRWPVLLLDDVLSELDGKRRRYLLEAVCDL-PQ 341 Query: 345 IFMTGTDKSVF 355 + +T T+ + Sbjct: 342 VILTATEPPEW 352 >gi|289826403|ref|ZP_06545515.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 357 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ + EL + + + P Sbjct: 66 EAFV-LHGRLQGEECETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|167621944|ref|YP_001672238.1| recombination protein F [Shewanella halifaxensis HAW-EB4] gi|189039642|sp|B0TLA6|RECF_SHEHH RecName: Full=DNA replication and repair protein recF gi|167351966|gb|ABZ74579.1| DNA replication and repair protein RecF [Shewanella halifaxensis HAW-EB4] Length = 365 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 160/355 (45%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I FRN + +L + G NG GKT+ILEAI FL GR FR V + Sbjct: 6 LHIETFRNISLAQLDPGDGLNLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIQHND 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128 + FA + E + I ++ + V+ IN I+ + L + L I + P S Sbjct: 66 DKL-TLFANLSVCEQESKIGLRRFRNGETEVK---INGDNIKRLSTLAETLPIQVITPES 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCSSI 186 +F G RR+F+D F D + R+++ RN+LL Y + Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDKSFHLAWANVRRILKQRNQLLKNQVSYSQIQYWDKE 180 Query: 187 EAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +E +I V+ +N L +I E++ +K+S T D K D F L E Sbjct: 181 LVRYSEQVTEIRKQYVDSLNEQLKGIIGEFLP---LVEVKVSFTRGWDSKTD--FGQLLE 235 Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + + G T GPH++DL + + A S G+ K+++ + +A Sbjct: 236 TQYLRDVAAGN--------TGSGPHKADLRLRVGVLPVQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL 358 +L+ T I L+D++ + LD R L + + D G+Q+F+T + ++ DSL Sbjct: 287 KLLKQQTDKNSIYLVDDLPSELDAQHRKLLLQQLMDTGAQVFVTAIEPAAIVDSL 341 >gi|227893835|ref|ZP_04011640.1| recombination protein F [Lactobacillus ultunensis DSM 16047] gi|227864324|gb|EEJ71745.1| recombination protein F [Lactobacillus ultunensis DSM 16047] Length = 375 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 153/353 (43%), Gaps = 26/353 (7%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRN L + FD IF+G N GKTN+LEAI FL+ R R S D IG Sbjct: 8 VQNFRNLKKLDVKFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNS--DKELIG--- 62 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F + + G + + + L + + + IN V + + L P Sbjct: 63 FGGEYTNLLGHVQKSQVDLTLRVLITKKGKKVWINRVEQSKLSKYVGQLNAILFSPEDLE 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + G RRRF+D+ I+P + + +++ +N L + D + + Sbjct: 123 LIKGAPALRRRFMDQEFGQINPEYLYFASKYRQVLIQKNNYLKQLSKGKAKDKVFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE- 246 Q+A + ++ R + + LS + + + HI L + L + S +K + Sbjct: 183 DQLAGIAAEVISRRFKFLRYLS-----HYASDAYAHISLG-SEQLAIAYHPSVSDIKADD 236 Query: 247 -----YAKKLFD-GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 Y K L R D+ R+ T GPHR D+ K + + S G+Q+ + + Sbjct: 237 STEDIYHKILASFERNKDTEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIALS 295 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 296 VKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347 >gi|110640083|ref|YP_680293.1| DNA replication and repair protein [Cytophaga hutchinsonii ATCC 33406] gi|123354188|sp|Q11NR3|RECF_CYTH3 RecName: Full=DNA replication and repair protein recF gi|110282764|gb|ABG60950.1| DNA replication and repair protein [Cytophaga hutchinsonii ATCC 33406] Length = 377 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 91/351 (25%), Positives = 146/351 (41%), Gaps = 28/351 (7%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI LN F+NY L L F A +F G NG GKTN+L++I L + F + Sbjct: 5 KISLLN---FKNYPELELSFSAGINLFAGLNGSGKTNLLDSIYCLCLTKSFLSTTDQQTI 61 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G +FS + E + I+ + D + ++ + E L Sbjct: 62 TTGQ-GYFSALGWFQ--ENAKEFKIQYDF--DGKKKSFTVDKKPYAKISEHIGRFPAIVL 116 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG----YFDSS 181 P + S +RRRF D + D + +I + ++ RN LL + D Sbjct: 117 TPHDTDLIRNSSEDRRRFFDTLFSQADHVYLDALIRYNHFIKQRNALLKQAADGMLVDRI 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQ 238 + + + + G I R E + L + EY + H + T L F+Q Sbjct: 177 LMDAYDHNLLQSGKIIAQKRDEYLKRLLPIFQEYYSLLSPDHEATDIEYETNVLSADFEQ 236 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 F K+ Y+K L + +RT G H+ D ++ I +GS G+QK ++ Sbjct: 237 VF---KDSYSKDL--------ILQRTNKGVHKDDFKFLINNEPIK-HYGSQGQQKTFVIA 284 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMT 348 + LA L+ TG PILL+D+I LD+ + L +V I Q+F++ Sbjct: 285 LKLAQYELLKACTGHNPILLMDDIFDKLDDLRIEKLIHLVQKYITGQLFIS 335 >gi|167957125|ref|ZP_02544199.1| DNA replication and repair protein RecF [candidate division TM7 single-cell isolate TM7c] Length = 347 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 147/326 (45%), Gaps = 22/326 (6%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89 T+ +G NG GKT +LEA+ G FR S D+ + + R+ D S Sbjct: 26 TVIIGKNGSGKTTLLEALYIALRGTSFR-GSDNDILQ-----HDKDWWRIHVSTTNGDRS 79 Query: 90 IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149 I + + S R + D NK + + P R+ G RR F+D + Sbjct: 80 IAYDNSGENSPRKKILIDERKFQRMPSNKKIPVVLFEPDDLRVLHGSPSRRRNFIDTFIM 139 Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209 I+P + + +ER ++ RN LL + S + + MA+ G +I RV +I+ ++ Sbjct: 140 HINPHYGTIIRKYERALKQRNTLLKQENASRSNIFAWDMAMAQYGAEIISQRVMIISKIN 199 Query: 210 SLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFC-ALKEEYAKKLFDGRKMDSMSRRTL 265 + + Q S+ G +D + + ++++ A L+ + D + T Sbjct: 200 QELTKTYQ---------SIAGNNDTVDLHYSHTLIDNIQQKLANMLYASFERDKILGFTS 250 Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 +GPHR D++ ++ + I S GE + +++ + + TG +P++LLD++ A Sbjct: 251 VGPHRHDVMFEF-NGQIAAKVASRGEVRSIILALKFIEVDITQEATGLSPVILLDDVFAE 309 Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTD 351 LDE ++ L D +Q+F+T T+ Sbjct: 310 LDETRQRRLAEKCRD--NQMFITSTN 333 >gi|156936080|ref|YP_001439996.1| recombination protein F [Cronobacter sakazakii ATCC BAA-894] gi|260595832|ref|YP_003208403.1| recombination protein F [Cronobacter turicensis z3032] gi|166220710|sp|A7MMZ8|RECF_ENTS8 RecName: Full=DNA replication and repair protein recF gi|156534334|gb|ABU79160.1| hypothetical protein ESA_03974 [Cronobacter sakazakii ATCC BAA-894] gi|260215009|emb|CBA26672.1| DNA replication and repair protein recF [Cronobacter turicensis z3032] Length = 357 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E + + + D +VR I+ V EL + + + + P Sbjct: 66 DAFI-LHGRLQGDEREVSVGLTKDRNGDSTVR---IDGSDGHKVAELAQLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + G RR FLD F +P + +RL++ RN R +T W Sbjct: 122 FTLLGGGPKYRRAFLDWGCFHNEPGFFVAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R A+++ + + + P L+ + F G +S + Sbjct: 178 DRELVPLAEQISQWRASYSEAIANDMADTC-AQFLPEFSLTFS-FQRGWEKES------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L G + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERGFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + + SQ+F++ + + + D ++ +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLAQRLKATQSQVFVSAISAEHILDMTDKNSKMF 348 Query: 366 RI 367 + Sbjct: 349 AV 350 >gi|27364431|ref|NP_759959.1| recombination protein F [Vibrio vulnificus CMCP6] gi|32129961|sp|Q8DDJ1|RECF_VIBVU RecName: Full=DNA replication and repair protein recF gi|27360550|gb|AAO09486.1| DNA recombination and repair protein RecF [Vibrio vulnificus CMCP6] Length = 359 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 82/363 (22%), Positives = 162/363 (44%), Gaps = 18/363 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + +G NG GKT++LEAI L GR F+ A V + Sbjct: 6 LIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRVIQNEC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F + R + ++ I + + D + ++I + + +L + L + + P Sbjct: 66 DQLF-VYGRFLNSDQF-ELPIGINKQRDGTTE-VKIGGQSGQKLAQLAQVLPLQLIHPEG 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187 + + RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 123 FDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQELSYWDKEM 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 A++AEL I+ R + + + S + Q E P + L + + + + + EE Sbjct: 183 ARLAEL---ISQWRADYVAQMQSKAEQLCQ-EFLPEFHIQLKYYRGWEKETPYQQILEEN 238 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 ++ D T+ GP+++DL + + + S G+ K+++ + LA + + Sbjct: 239 FER-------DQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQGQHL 290 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366 + TG + L+D+ ++ LD +R L + G+Q+F++ T+ + D +++ + Sbjct: 291 TEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGRLFH 350 Query: 367 ISN 369 + Sbjct: 351 VEQ 353 >gi|254230347|ref|ZP_04923733.1| Recombinational DNA repair ATPase [Vibrio sp. Ex25] gi|262392781|ref|YP_003284635.1| DNA recombination and repair protein RecF [Vibrio sp. Ex25] gi|151937139|gb|EDN56011.1| Recombinational DNA repair ATPase [Vibrio sp. Ex25] gi|262336375|gb|ACY50170.1| DNA recombination and repair protein RecF [Vibrio sp. Ex25] Length = 359 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 85/365 (23%), Positives = 161/365 (44%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEA+ L GR F+ + V + Sbjct: 6 LIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF +P + F+RL + RN LL Y + S+ Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYQAWGRFKRLNKQRNALLKTANSYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R I + + + E + + P ++ L + D + Sbjct: 179 -DQEMAGLAENISQWRASYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----H 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E +K F+ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 233 EILEKNFE---RDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++ K Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDNGKL 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|113475400|ref|YP_721461.1| recombination protein F [Trichodesmium erythraeum IMS101] gi|123352421|sp|Q114T6|RECF_TRIEI RecName: Full=DNA replication and repair protein recF gi|110166448|gb|ABG50988.1| DNA replication and repair protein RecF [Trichodesmium erythraeum IMS101] Length = 390 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 174/374 (46%), Gaps = 33/374 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ +FRNY ++ FD TI +GDN GK+N+LE++ LS + R D+ Sbjct: 3 LKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDLI- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + S A +E G D+++ L ++ R+V + + R +D L+ + + Sbjct: 62 LDSKQASKIQASLERQLGNIDLALTLRSQGKRTVAV--NGETISRHLDFLSILNVVHFSS 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----------TE 175 +D + G + RR +LDR++ ++P + ++ + +++R RN LL T Sbjct: 120 LDLDLVRGGPEV-RRYWLDRLLVQLEPVYAHILLQYNQVLRQRNALLKKIRQQKMAAETT 178 Query: 176 GYFDSSWCSSI---EAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFP 222 G S + +AQ+A G ++ R ++ L+ L ME + E Sbjct: 179 GSSPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEYLA 238 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 ++ + + S +++ + +K+ + T++GPHR D+I D Sbjct: 239 NVIVDSNELI---IQDSLEGVRQAFLEKIKVRAIAEQYQGTTVVGPHRDDVIFTINDTPA 295 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 +GS G+Q+ +++ + LA +LI P+LLLD++ A LD ++N L +++ Sbjct: 296 R-QYGSQGQQRTLVLALKLAELQLIEEVVQEPPLLLLDDVLAELDLHRQNQLLEAISN-R 353 Query: 343 SQIFMTGTDKSVFD 356 Q +T T FD Sbjct: 354 FQTLITTTHLGCFD 367 >gi|159904234|ref|YP_001551578.1| recombination protein F [Prochlorococcus marinus str. MIT 9211] gi|159889410|gb|ABX09624.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9211] Length = 352 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 88/337 (26%), Positives = 148/337 (43%), Gaps = 22/337 (6%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS-FFSTFARVEGMEGLADIS 89 + +G NG+GK+N+LEA+ L R R +S D+ S E Sbjct: 7 LVIGPNGIGKSNLLEAVELLGSLRSHRASSDQDLIHWEEKSALLRAITEDED-------K 59 Query: 90 IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149 I+LE R + + + + R +D + LR + G RR +LDR+V Sbjct: 60 IELELRKKGGRKAYRNDKCLSRQIDLIGP-LRCVGFSALDLHLVRGEPSLRRHWLDRVVL 118 Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGVKINIARVEM 204 ++P + M RL+R RN+L SS + + Q+A + +I+ R Sbjct: 119 QLEPVYSDLMSRLIRLLRQRNQLWRNWKHTSSKDYGTLLDAFDVQLALVSTRIHRRRQRA 178 Query: 205 INALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 +N L L + + ++ + + L L FL+ + ++ C L E K+L + R ++ Sbjct: 179 LNRLKPLAILWQERLSKGNEALELHYLPGSFLEKQDEELECRLSIE--KQLLEQRAVEQK 236 Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320 +GPHR D I + A GS G+Q+ +++ + LA LI G APIL+LD Sbjct: 237 LGHCRVGPHR-DEIEFLLNGASARRFGSAGQQRTIVLSLKLAELELIGEIYGEAPILILD 295 Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 ++ A LD ++ L V Q ++ T F+ Sbjct: 296 DVLAELDPMRQLLLLEAVGH-KHQCLISATHLDAFEG 331 >gi|1074046|pir||I64106 recF protein - Haemophilus influenzae (strain Rd KW20) Length = 375 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 88/370 (23%), Positives = 164/370 (44%), Gaps = 23/370 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 17 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 76 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + I ++ + + V+ IN + +L L + Sbjct: 77 ISYDEPH-FTLFGQIQESQHQWSIGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 132 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 133 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSAIKI 192 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 W + ++A+L +++ R E ALS I + Q P ++++++ F Q + Sbjct: 193 W----DVELAKLAHQVSEWRAEYAEALSPEIEQTCQL-FLPELEINVS------FHQGW- 240 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIF 300 +Y + L + D T GP ++D + + + + S G+ K+++ + Sbjct: 241 EKNADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALR 298 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLN 359 LA + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + Sbjct: 299 LAQGEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQV 358 Query: 360 ETAKFMRISN 369 E K + N Sbjct: 359 ENKKMFSVHN 368 >gi|119953227|ref|YP_945436.1| DNA replication and repair protein RecF [Borrelia turicatae 91E135] gi|119861998|gb|AAX17766.1| DNA replication and repair protein RecF [Borrelia turicatae 91E135] Length = 358 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 91/370 (24%), Positives = 163/370 (44%), Gaps = 29/370 (7%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 K++F N F+N + + FD + F G+NG GKTNIL+AI L+ F + ++ Sbjct: 7 KVEFFN---FKNIENRVINFDFNNIYFCGENGSGKTNILDAIYCLAFASSFLVRTDRELI 63 Query: 66 RIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI-S 123 G F+ F EG G +S++ ++ +++N+ +++ D N L I S Sbjct: 64 TYGKTEFYLKCFYNTEGKAGEIGLSLRNGKKE------IKVNNSIVK--DRKNLILNIPS 115 Query: 124 WLVPSMDRIF-SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + + D F G ++R F D+ + + + + + ++++ RN +L +G + Sbjct: 116 VIFSNYDTDFIIGAPAKKRWFFDQAISLVSLSYLDSLRKYRKILQQRNLILRQG--NKDL 173 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-C 241 + +I R I Y ++ L+ K+ S C Sbjct: 174 LKVYNETFVDFAFEITKMRENFIKHFYEFFKYYYS------FIFDVSYSLEIKYLPSVKC 227 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + ++E+ + L + + S TLIGPHR DL + + H STG+ + + + L Sbjct: 228 SKRDEFLQTLLLKEQDELYSESTLIGPHR-DLYEILSGERVFTHHSSTGQIRALALIYRL 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 + + G APILL D++ LD +R +F I+ SQ F T D + + Sbjct: 287 IQVIMFNKQFGIAPILLFDDVFLELDSMRRKRIFDILPK-DSQCFFTFLDDCY--DIKQD 343 Query: 362 AKFM--RISN 369 +KF+ RI N Sbjct: 344 SKFIVYRIKN 353 >gi|217967931|ref|YP_002353437.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM 6724] gi|217337030|gb|ACK42823.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM 6724] Length = 359 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 95/357 (26%), Positives = 160/357 (44%), Gaps = 46/357 (12%) Query: 10 LNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68 L + FRN +L L FD IF G+N GKTNILE I FL G+ FR + ++ R G Sbjct: 6 LKVINFRNLKNLSLNFFDV--NIFYGENAQGKTNILEGIYFLFSGKSFRTKNEKEIIRWG 63 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP- 127 SF+ ++G ++ LET + ++IN L ++ + +L P Sbjct: 64 EESFY-----LKGNVDWQSQNLILETALSGEEKRIKINQ------KNLKRYRDMVFLFPI 112 Query: 128 ---SMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S + I F +RR L+R + + ++ + + ++ + + RN L S W Sbjct: 113 ILFSQEEIENFKKGPSQRRYLLNRFISTLSYKYHKALSEYYKALYQRNLTLKNERDVSLW 172 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQS- 239 S+ + LG I R ++ + + E + +L G FL+ ++ S Sbjct: 173 NST----LIRLGGYILFERRNVMEEIKRKVKE---------VSNNLLGRDFLEVEYLSSV 219 Query: 240 -FCALKEEYAKK----LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI---AHGSTGE 291 +EE K L + + + TL+GPHR D+I+ + GS GE Sbjct: 220 PLGDSEEEMLKNFETMLKEKEWEEKRKKYTLVGPHRDDVILRVIRDNVKYDLRKFGSAGE 279 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 +K+ + LA ++S PILL+D++ LDEDK+ ++ + + QIF+T Sbjct: 280 KKLGYIIWKLAQVEILSENRKEKPILLIDDLFGDLDEDKQRKVWEGIKNF--QIFLT 334 >gi|153835129|ref|ZP_01987796.1| DNA replication and repair protein RecF [Vibrio harveyi HY01] gi|156972779|ref|YP_001443686.1| recombination protein F [Vibrio harveyi ATCC BAA-1116] gi|166221877|sp|A7N1F1|RECF_VIBHB RecName: Full=DNA replication and repair protein recF gi|148868401|gb|EDL67515.1| DNA replication and repair protein RecF [Vibrio harveyi HY01] gi|156524373|gb|ABU69459.1| hypothetical protein VIBHAR_00444 [Vibrio harveyi ATCC BAA-1116] Length = 357 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 87/365 (23%), Positives = 161/365 (44%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + V + Sbjct: 6 LIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF +P F+RL + RN LL Y + S+ Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R I + + + E + + P ++ L + D + Sbjct: 179 -DQEMAHLAENISQWRALYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----H 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E +K F+ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 233 EILEKNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++T K Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDTGKL 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|16762489|ref|NP_458106.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143977|ref|NP_807319.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|168818304|ref|ZP_02830304.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|213052918|ref|ZP_03345796.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213581831|ref|ZP_03363657.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609169|ref|ZP_03368995.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|20978597|sp|Q8Z2N4|RECF_SALTI RecName: Full=DNA replication and repair protein recF gi|25300556|pir||AC0958 recF protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504794|emb|CAD03159.1| recF protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139613|gb|AAO71179.1| recF protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|205344501|gb|EDZ31265.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088257|emb|CBY98019.1| DNA replication and repair protein recF [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 357 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ + EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|320539856|ref|ZP_08039515.1| putative gap repair protein [Serratia symbiotica str. Tucson] gi|320030042|gb|EFW12062.1| putative gap repair protein [Serratia symbiotica str. Tucson] Length = 361 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 159/361 (44%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEA+ L GR FR V R Sbjct: 6 LLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F R++G E +IS+ L +++ +S ++I+ V EL + L + + P Sbjct: 66 PEFV-LHGRIDGAE--REISVGL-SKNRQSESKVRIDGSDSHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F DP +RL++ RN L + + + + Q Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNDPGFFTAWSHLKRLLKQRNAALRQ-VSRYAQIRAWDQQ 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R + A+++ I + P LS + F G +S E + Sbjct: 181 LIPLAERISEWRAKYSEAIAADITATC-AQFLPEFALSFS-FQRGWEKESDYG---ELLE 235 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +LF+ D T GPH++D + + S G+ K+++ + LA ++ Sbjct: 236 RLFE---RDRTLTYTAAGPHKADFRIRAAGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD +R L + +Q+F++ + + V D E K R+ Sbjct: 292 QSGRRCLYLIDDFASELDIGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGKMFRVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|62182324|ref|YP_218741.1| recombination protein F [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168233390|ref|ZP_02658448.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168260380|ref|ZP_02682353.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197251211|ref|YP_002148774.1| recombination protein F [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263684|ref|ZP_03163758.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244935|ref|YP_002217786.1| recombination protein F [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354577|ref|YP_002228378.1| recombination protein F [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859062|ref|YP_002245713.1| recombination protein F [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585635|ref|YP_002639434.1| recombination protein F [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913089|ref|ZP_04656926.1| recombination protein F [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|75505469|sp|Q57I02|RECF_SALCH RecName: Full=DNA replication and repair protein recF gi|226737826|sp|B5EYB2|RECF_SALA4 RecName: Full=DNA replication and repair protein recF gi|226737827|sp|B5FN08|RECF_SALDC RecName: Full=DNA replication and repair protein recF gi|226737828|sp|B5QUP8|RECF_SALEP RecName: Full=DNA replication and repair protein recF gi|226737829|sp|B5RFY9|RECF_SALG2 RecName: Full=DNA replication and repair protein recF gi|254790486|sp|C0Q2K7|RECF_SALPC RecName: Full=DNA replication and repair protein recF gi|62129957|gb|AAX67660.1| gap repair protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|197214914|gb|ACH52311.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241939|gb|EDY24559.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197939451|gb|ACH76784.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274358|emb|CAR39383.1| recF protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205332587|gb|EDZ19351.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205350391|gb|EDZ37022.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710865|emb|CAR35229.1| recF protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470163|gb|ACN47993.1| recombination protein F [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716815|gb|EFZ08386.1| recombination protein F [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326625572|gb|EGE31917.1| recombination protein F [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629713|gb|EGE36056.1| recombination protein F [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 357 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ + EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|322830736|ref|YP_004210763.1| DNA replication and repair protein RecF [Rahnella sp. Y9602] gi|321165937|gb|ADW71636.1| DNA replication and repair protein RecF [Rahnella sp. Y9602] Length = 362 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 94/362 (25%), Positives = 157/362 (43%), Gaps = 16/362 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEA+ L GR FR V R Sbjct: 6 LLIKDFRNIEAADLDPSPGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHDQ 65 Query: 70 PSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 P F ARV +G + I + + D VR I+ V EL + L + + P Sbjct: 66 PEFV-LHARVDDGGDRELSIGLSKSRQGDSKVR---IDGSDGHKVSELAQMLPMQLITPE 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 + +G RR F+D F DP + RL++ RN L + + + + Sbjct: 122 GFTLLNGGPKYRRAFIDWGCFHHDPGFFIAWSNLRRLLKQRNAALRQ-VSRYAQIRAWDQ 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ L +I+ R +A+++ I + P LS + F G +D+ + EY Sbjct: 181 ELIPLAGRISEWRAAYSDAIAADISATC-AQFLPEFALSFS-FQRG-WDK-----ETEYG 232 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + L + D T GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 ELLERNFERDRALTYTASGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLT 291 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 +G + LLD+ ++ LD D+R L + +Q+F++ + + V D + E K R+ Sbjct: 292 RQSGRRCLYLLDDFASELDADRRRLLADRLKATQAQVFVSAISAEQVTDMMGEKGKMFRV 351 Query: 368 SN 369 Sbjct: 352 EQ 353 >gi|300719139|ref|YP_003743942.1| DNA replication and repair protein [Erwinia billingiae Eb661] gi|299064975|emb|CAX62095.1| DNA replication and repair protein [Erwinia billingiae Eb661] Length = 361 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 153/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R+EG E + + D VR I+ V EL + L + + P Sbjct: 66 DAFV-LHGRIEGAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F +P + RLM+ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHNEPGFFTAWSNLRRLMKQRNAALRQ-VSRYQQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A++ I + P KL+ + F G +D+ + EY + Sbjct: 181 LVPLAEQISRWRAAYSDAIAEDINATC-AQFLPEFKLTFS-FQRG-WDK-----ETEYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTASGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 G + L+D+ ++ LDE +R L + +Q+F++ + + VFD +E K + Sbjct: 292 QNGRRCLYLIDDFASELDETRRQLLASRLKATHAQVFVSAISAEHVFDMTDEKGKMFHVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|319775075|ref|YP_004137563.1| DNA replication and repair protein RecF [Haemophilus influenzae F3047] gi|329123014|ref|ZP_08251585.1| recombination protein F [Haemophilus aegyptius ATCC 11116] gi|317449666|emb|CBY85872.1| DNA replication and repair protein RecF [Haemophilus influenzae F3047] gi|327471945|gb|EGF17385.1| recombination protein F [Haemophilus aegyptius ATCC 11116] Length = 359 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 163/367 (44%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E ALS I + Q P ++++++ F Q + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALSPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFAGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|312892157|ref|ZP_07751654.1| DNA replication and repair protein RecF [Mucilaginibacter paludis DSM 18603] gi|311295287|gb|EFQ72459.1| DNA replication and repair protein RecF [Mucilaginibacter paludis DSM 18603] Length = 366 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 159/361 (44%), Gaps = 42/361 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ F+NY ++ + F G+NG GKTN+L+A+ +LS + + + + Sbjct: 3 LKQLSLLNFKNYTQAEIILEPGVNAFAGNNGAGKTNLLDAVHYLSLCKSYFNPIDSQQIK 62 Query: 67 IGSPSFF--STFARVEGME----GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 G+ F F++ + E GL K R+ + + R+ D H+ Sbjct: 63 QGADFFMVNGVFSKDDKAEVIACGLKRNQKKQFKRNKKEYQ---------RLAD----HI 109 Query: 121 RISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174 + LV P I S ERR+F+D ++ D + +I + +++ RN LL Sbjct: 110 GLFPLVMISPYDISIIIEGSEERRKFIDNVISQTDNGYLDELIAYNKILLNRNALLKLIA 169 Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGF 231 G +D + Q+ G +I R + + + + + + ++L+ Sbjct: 170 DTGRYDPQMLEVYDEQLVLSGTRIFEKRKKFMEVFIGIFNRHYRFISDEAEMVELNYESQ 229 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 L L ++A+ L + D RT G H+ DL A+ GS G+ Sbjct: 230 L----------LTGDFAQLLKKSTERDRALERTTNGVHKDDLHFTIHGMAMK-KFGSQGQ 278 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTG 349 QK L+ + LA ++ G+ P+LLLD+I LDE++ L ++V+ D G Q+F+T Sbjct: 279 QKSFLIALKLAQYTFLNEQKGYKPLLLLDDIFDKLDENRTRKLMQMVSNNDFG-QVFITD 337 Query: 350 T 350 T Sbjct: 338 T 338 >gi|225020877|ref|ZP_03710069.1| hypothetical protein CORMATOL_00885 [Corynebacterium matruchotii ATCC 33806] gi|224946359|gb|EEG27568.1| hypothetical protein CORMATOL_00885 [Corynebacterium matruchotii ATCC 33806] Length = 364 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 92/335 (27%), Positives = 152/335 (45%), Gaps = 27/335 (8%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF-FSTFARVEGMEGLADI 88 T+FVG NG GKTN++EAI +++ R A A + R G P+ S A + E A + Sbjct: 8 TLFVGRNGHGKTNLVEAIGYVAHLGSHRVAQDAPLVRHGQPNARVSATAVRDDRELTAHL 67 Query: 89 SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148 I + S+ ++N EL +R P + G ERRR+LD ++ Sbjct: 68 LINASGANQASINRTRLNS-----PRELLGVVRTVLFCPEDLALVRGEPAERRRYLDNII 122 Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLT-------EGYF-DSSWCSSI---EAQMAELGVKI 197 PR D+E+++R R LL GY D +++ +AQ++ G ++ Sbjct: 123 ATRRPRLAGVKADYEKVLRQRTTLLKTSSAALRRGYSGDDGSLATLDVWDAQLSRQGAQM 182 Query: 198 NIARVEMINALSSLIMEY---VQKENFP-HIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 AR ++ L L+ E + E+ P HI T D D + ++ +L Sbjct: 183 IAARRALVAELDPLVHEAYAGIAPESRPAHIAYEST-VPDVGEDPAL--IEAAMLAELGR 239 Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313 R + R+L+GPHR DL++ D S GE +++ + L +L+ G Sbjct: 240 MRPKEIDRGRSLVGPHRDDLVITLGDVPAK-GFASHGETWSMVLALRLGEFQLL-RADGT 297 Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 P+L+LD++ A LD +R L + D+ Q+ +T Sbjct: 298 DPVLILDDVFAELDALRRERLVHLTQDV-EQVLIT 331 >gi|314922681|gb|EFS86512.1| recombination protein F [Propionibacterium acnes HL001PA1] gi|314982907|gb|EFT26999.1| recombination protein F [Propionibacterium acnes HL110PA3] gi|315091213|gb|EFT63189.1| recombination protein F [Propionibacterium acnes HL110PA4] gi|315094447|gb|EFT66423.1| recombination protein F [Propionibacterium acnes HL060PA1] gi|315105167|gb|EFT77143.1| recombination protein F [Propionibacterium acnes HL050PA2] Length = 401 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 169/369 (45%), Gaps = 28/369 (7%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175 P+ + G +RR FLD +V PR D+ER+++ RN LL + Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G + + ++A +G ++ AR++ ++A+ LI +E P L+ + Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAIMPLI-STAYREIAPANDLTTASYKSTI 244 Query: 232 -LDGKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDK 280 L+G + + S ++E A + D R+ D + R TL+GP R D+I+ + + Sbjct: 245 DLEGLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362 Query: 341 IGSQIFMTG 349 Q+ +T Sbjct: 363 -ADQVLVTA 370 >gi|283836133|ref|ZP_06355874.1| hypothetical protein CIT292_10554 [Citrobacter youngae ATCC 29220] gi|291068322|gb|EFE06431.1| DNA replication and repair protein RecF [Citrobacter youngae ATCC 29220] Length = 357 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 157/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 SF R++G E I + + D VR I+ V EL + + + P Sbjct: 66 ESFV-LHGRLQGEERETSIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E ++ + + Q + P LS + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLSFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YAEVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|262039510|ref|ZP_06012812.1| DNA replication and repair protein RecF [Leptotrichia goodfellowii F0264] gi|261746491|gb|EEY34028.1| DNA replication and repair protein RecF [Leptotrichia goodfellowii F0264] Length = 364 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 80/349 (22%), Positives = 153/349 (43%), Gaps = 12/349 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+ S FR + D + G NG GKT+ +EA+ FL+ G+ FR ++ R Sbjct: 3 LKQLSYSNFRCLEDTKTELDRNFNLIYGKNGQGKTSFIEAVHFLATGKSFRTKKTKELFR 62 Query: 67 IGSPS--FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + E + I + E +D IN + +D + L I Sbjct: 63 YNKNRVIVFGKYINKNEEENILAIDVNEEKKD------FYINRNKNKYIDYVG-LLNIIS 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P I G RR F + + + + ++DFE++++ RN+L+ E S Sbjct: 116 FIPEDIEIIVGNPSIRRNFFNYEISQAKKDYLKSIVDFEKILKTRNKLIKEKKTREEIYS 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCA 242 + E G I I R E I +S L+ +K P +KL FL ++ Sbjct: 176 IYNEKFMEEGTNIIIHRREFIKNISILLNLNYRKLFDPKSELKLKYDCFLGDIDKKTKEE 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +KE++++ + + + + +L GP + D I + K + S GE+K ++ + ++ Sbjct: 236 IKEKFSENIKRKAEREKILGYSLTGPQKDDFIFELNGKNAK-SFSSQGEKKSIIFSLKVS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 ++ P+ ++D+I+++ DE ++ ++ + Q F+T T+ Sbjct: 295 EIDMLVKEKNEYPLFIMDDIASYFDEVRKKSILDYFINKKIQCFITSTE 343 >gi|241889743|ref|ZP_04777041.1| DNA replication and repair protein RecF [Gemella haemolysans ATCC 10379] gi|241863365|gb|EER67749.1| DNA replication and repair protein RecF [Gemella haemolysans ATCC 10379] Length = 378 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 93/385 (24%), Positives = 168/385 (43%), Gaps = 34/385 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L + FRNY S + + VG+N GKTNI+E+I L+ G+ +R S ++ Sbjct: 1 MKIKSLKLLYFRNYLSTNIEVHPSLNVLVGNNANGKTNIIESIFCLALGKSYRTKSDSEC 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-VIRVVDELNKHLRI 122 G + + S E DI + + + +S + I + V ELN + Sbjct: 61 IMFGETATAMSCIVNKNDRE--LDIMLGINNK-GKSAKIAGIKKTKLTDFVGELN----V 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------G 176 P +I G RR F++R + + + + ++ L++ RN L + Sbjct: 114 VLFSPEDLQIVKGSPALRREFMNREFYQFSRIYHKYYLMYQHLLKQRNSYLKDMRKNPKD 173 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL-----TGF 231 ++ ++ +Q+ ++ + I RV + +S L Y N + + +L + Sbjct: 174 EMSLAYLETLTSQLVKVALYITKERVSFVRDISKLT--YKNMLNISNGQETLKIKYKSSV 231 Query: 232 LDGK-----FDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 LD D+SF L + KK FD D M T IGP DL Y + Sbjct: 232 LDALNIAEINDESFTEENLTKVMMKKSFD----DIMRGSTKIGPQHDDLEF-YINDLDAK 286 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 + S G+Q+ +++ + LA + TG P+LLLD++ + LD++++ L + + Sbjct: 287 MYASQGQQRSIVLSLKLAEINFLKEKTGTYPVLLLDDVLSELDKNRQLKLLDAINENVQT 346 Query: 345 IFMTGTDKSVFDSLNETAKFMRISN 369 T + + + L + AK +I + Sbjct: 347 FITTPSISDIKEDLLKKAKVFKIED 371 >gi|282856280|ref|ZP_06265561.1| DNA replication and repair protein RecF [Pyramidobacter piscolens W5455] gi|282585857|gb|EFB91144.1| DNA replication and repair protein RecF [Pyramidobacter piscolens W5455] Length = 352 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 154/353 (43%), Gaps = 23/353 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I FRN + + ++ + G NG GKTNILEA+ ++ F + +D Sbjct: 1 MRIAQTRFRNFRNLENALIAWEPGLNLLTGANGAGKTNILEALHVVTGWGAFSGSKCSDT 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S S A+ G E A I + R L+++ + R D N +++ Sbjct: 61 VKWQSEGGASLAAQAAG-EREAIIEAVIMARAS-----LRLDGKLCRWGDLRNCVPSLTF 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L PS + G RRRFLD + P + ++ ++ ++ + R LL G+ Sbjct: 115 L-PSDMALIEGAPSVRRRFLDLLCALYFPLYAYKLSEYRKITQHRRHLLGLGHST----R 169 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPH-IKLSLTGFLDGKFDQSFC 241 E MA L I R+E+I AL E+++K P I L+L G D Sbjct: 170 VTEETMANLSAWIWECRLEVIAALR----EHLEKWRGLLPRKIDLNLKRGGSGNADD--- 222 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L E++ + + + S L+GPHR DL++ C+ + S G+++ + + + Sbjct: 223 -LLEDFHRSCAILAERERASGLPLVGPHRDDLVIG-CEGRLASEVLSRGQRRRAALALVM 280 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 A + +P+LL DE+++ LDE R L + Q+F + ++ Sbjct: 281 GAASAVERRGRASPVLLFDEVASELDEAGRTVLMECLQHSRWQVFAATAESAL 333 >gi|332638149|ref|ZP_08417012.1| recombination protein F [Weissella cibaria KACC 11862] Length = 381 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 80/346 (23%), Positives = 154/346 (44%), Gaps = 15/346 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI-G 68 L ++ FRNY L + F +F+G N GKTN+LEAI L+ R R S ++ G Sbjct: 6 LKLNNFRNYQDLAVTFSPGVNVFLGPNAQGKTNLLEAIYVLALARSHRTTSDKELIGWDG 65 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + S R + G +S+ ++ ++ ++N + + L + P Sbjct: 66 KEAMVSGVVRRQ--YGKVPLSLAFTSKGKKA----RMNHLDQAKLGTYIGQLNVILFAPE 119 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCS 184 + G RR F+DR + P++ ++ +++ RN+ L ++ D + Sbjct: 120 DLALVKGAPTIRRNFIDREFSQMSPKYLYIANQYKGVLKQRNQYLKQLQSKQAKDMLYLE 179 Query: 185 SIEAQMAELGVKINIARVEMINAL--SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+ ++ + R+++I L ++ + + ++++ L+ + Sbjct: 180 VLTDQLTSFASELIVRRIQLIKKLGEAAAPIHADITQGGETLRIAYVSQLNEEELGDEQV 239 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +KE K+ + + M TL+GPHR DL D + GS G+Q+ + + LA Sbjct: 240 IKEAMTKRFERLQSREVMMGTTLLGPHRDDLRFDVNGHDVA-TFGSQGQQRTTALAVKLA 298 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 L+ TG PILLLD++ + LD +++ L + + Q F+T Sbjct: 299 EIDLMKQETGEYPILLLDDVLSELDTNRQTHLLTAMQN-KVQTFIT 343 >gi|206579462|ref|YP_002235888.1| DNA replication and repair protein RecF [Klebsiella pneumoniae 342] gi|290511691|ref|ZP_06551059.1| DNA replication and repair protein recF [Klebsiella sp. 1_1_55] gi|226737806|sp|B5XT53|RECF_KLEP3 RecName: Full=DNA replication and repair protein recF gi|206568520|gb|ACI10296.1| DNA replication and repair protein RecF [Klebsiella pneumoniae 342] gi|289775481|gb|EFD83481.1| DNA replication and repair protein recF [Klebsiella sp. 1_1_55] Length = 357 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 157/361 (43%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F + + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLRPWDLE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E A+ + + Q + P L+ + F G ++ +YA+ Sbjct: 181 LIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFS-FQRGWEKET------DYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D ++ +K R+ Sbjct: 292 VSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSKMFRVE 351 Query: 369 N 369 Sbjct: 352 K 352 >gi|254994016|ref|ZP_05276206.1| recombination protein F [Listeria monocytogenes FSL J2-064] Length = 352 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 87/363 (23%), Positives = 156/363 (42%), Gaps = 48/363 (13%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 L F +F+G+N GKTN+LEA+ L+ + R + D + A++EG Sbjct: 1 LEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFIM-----WEKEEAKMEGR 55 Query: 83 EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142 S+ LE + + ++N + + + + +L + P + G RRR Sbjct: 56 IAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVKGAPGIRRR 115 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQMAELGVKIN 198 FL+ + + P + + +++R+++ RN+ L + D + Q A++ + + Sbjct: 116 FLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQFADVAINLT 175 Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL-FDG--- 254 R + I L + + + + LK EY + +G Sbjct: 176 KRRADFIQKLEAY-----------------AAPIHHQISRGLETLKIEYKASITLNGDDP 218 Query: 255 --------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +KM+S+ +R TLIGPHR D + Y + GS G+Q+ + I Sbjct: 219 EVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQRTTALSIK 277 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T S D +E Sbjct: 278 LAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTSTSGID--HE 334 Query: 361 TAK 363 T K Sbjct: 335 TLK 337 >gi|16272929|ref|NP_439154.1| recombination protein F [Haemophilus influenzae Rd KW20] gi|260580082|ref|ZP_05847912.1| recombination protein F [Haemophilus influenzae RdAW] gi|1172892|sp|P43767|RECF_HAEIN RecName: Full=DNA replication and repair protein recF gi|1574021|gb|AAC22653.1| DNA/ATP binding protein (recF) [Haemophilus influenzae Rd KW20] gi|260093366|gb|EEW77299.1| recombination protein F [Haemophilus influenzae RdAW] Length = 359 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 87/367 (23%), Positives = 163/367 (44%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + I ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWSIGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E ALS I + Q P ++++++ F Q + Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALSPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|82779229|ref|YP_405578.1| recombination protein F [Shigella dysenteriae Sd197] gi|309784250|ref|ZP_07678889.1| DNA replication and repair protein recF [Shigella dysenteriae 1617] gi|97180962|sp|Q329B8|RECF_SHIDS RecName: Full=DNA replication and repair protein recF gi|81243377|gb|ABB64087.1| ssDNA and dsDNA binding, ATP binding [Shigella dysenteriae Sd197] gi|308927757|gb|EFP73225.1| DNA replication and repair protein recF [Shigella dysenteriae 1617] Length = 357 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 159/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSMLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F + + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNESGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 178 DKELILLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|157690802|ref|YP_001485264.1| recombination protein F [Bacillus pumilus SAFR-032] gi|166918720|sp|A8F8Y7|RECF_BACP2 RecName: Full=DNA replication and repair protein recF gi|157679560|gb|ABV60704.1| recombination protein F [Bacillus pumilus SAFR-032] Length = 370 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 87/358 (24%), Positives = 160/358 (44%), Gaps = 29/358 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ +RNY L FD + + +G+N GKTN++EAI LS + R ++ ++ R Sbjct: 3 IQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG + + ++ + + ++N + + + L Sbjct: 63 -----WDQDYAKIEGRVIKKNGPLPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDSSW 182 P + G RRRFLD + + + + +++++ RN +L T D + Sbjct: 118 PEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQRNHYLKQLQTRKQTDQAM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFL 232 + Q+ + K+ R+ L S +E + + I++S L Sbjct: 178 LEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYHTAIEVSEASDL 237 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 K S+ EE +KL D R++D TL GPHR DL+ + + +GS G+Q Sbjct: 238 -SKIKNSY----EESFQKLRD-REIDRGV--TLWGPHRDDLLF-FVNGRDVQTYGSQGQQ 288 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + + LA LI G PILLLD++ + LD+ +++ L + Q F+T T Sbjct: 289 RTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTT 345 >gi|257783818|ref|YP_003179035.1| DNA replication and repair protein RecF [Atopobium parvulum DSM 20469] gi|257472325|gb|ACV50444.1| DNA replication and repair protein RecF [Atopobium parvulum DSM 20469] Length = 363 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 88/371 (23%), Positives = 167/371 (45%), Gaps = 15/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K++ +++ FR +AS + AQ TIFVG N GKTN +EA+ L+ G FR+ + + + Sbjct: 3 LKVEHVSLYNFRCFASKEIDLSAQTTIFVGKNAAGKTNTVEALQLLTAGYSFRKPTPSQL 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + L + I E R R N + D + I + Sbjct: 63 LLTDTSEAKIEISLTGDGRKLENTCIITERR-----RQFSKNGKKCQAADISGTLMSILF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + I G S R F D + + + + + + RN+LL + D + Sbjct: 118 NPDDLSMIKGGASYRREEF-DDFGRQANKSYFKVFSTYIKTVEQRNKLLKSDWPDENLLD 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLS-LTGFLDGKFDQSFCA 242 + + +A G + AR+ + L+ E Y + H++++ ++ + + S Sbjct: 177 AWDLSLARGGAILLHARIHLFERLAKKTCEIYQELSGGEHLEMNYISSIGEISLEASREE 236 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301 + +++ + L + R D +++ GPHR D V++ + + GS G+ + V++ + + Sbjct: 237 ISDQFLQALNEIRIDDIRRQQSTKGPHRDD--VEFLIEGKEARNFGSQGQIRTVVLALKM 294 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVF-DSLN 359 A L G P+LLLD++ + LDED+R A+ DI Q +T T+ F + + Sbjct: 295 AEVLLSEEILGEKPLLLLDDVMSELDEDRRKAIMEFAFHDI--QTVITTTNLGYFSEEIL 352 Query: 360 ETAKFMRISNH 370 E A+ +R S+ Sbjct: 353 EKAQIVRFSDE 363 >gi|56415709|ref|YP_152784.1| recombination protein F [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364637|ref|YP_002144274.1| recombination protein F [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81678054|sp|Q5PKU8|RECF_SALPA RecName: Full=DNA replication and repair protein recF gi|226737832|sp|B5BIL2|RECF_SALPK RecName: Full=DNA replication and repair protein recF gi|56129966|gb|AAV79472.1| recF protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096114|emb|CAR61710.1| recF protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 357 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 89/360 (24%), Positives = 158/360 (43%), Gaps = 17/360 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ + EL + + + P Sbjct: 66 EAFV-LHGRLQGEEREMSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEA 188 + +G RR FLD F + + +RL++ RN L + ++ + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQ--LRPWDK 179 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ L +I+ R E +A++ + + Q + P L+ + F G ++ +YA Sbjct: 180 ELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------DYA 231 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 232 DVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K + Sbjct: 291 RESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 >gi|218283253|ref|ZP_03489314.1| hypothetical protein EUBIFOR_01903 [Eubacterium biforme DSM 3989] gi|218216008|gb|EEC89546.1| hypothetical protein EUBIFOR_01903 [Eubacterium biforme DSM 3989] Length = 363 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 23/345 (6%) Query: 15 FRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73 FRNY ++ F + F+ G N GKTN++EAI FLS R FR + G F Sbjct: 11 FRNYETMSFSFVPKCIHFLYGKNAQGKTNLIEAIYFLSHLRSFRTNQMDSMIMHGCNEF- 69 Query: 74 STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133 A VE ++ + + D + + + V + D + I P +F Sbjct: 70 CVQAIVESNHRKEELKVIV---DHQKKHLFRFQNPVKKYSDFIGIENAI-LFCPDDLSLF 125 Query: 134 SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 + RRRF+D + + + + +++L++ RN+ L + D QM E+ Sbjct: 126 TSSPKNRRRFIDMELMKLSRTYTSTLSSYQKLLKQRNQALKQSNIDECLVQIYLDQMIEV 185 Query: 194 GVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 I R E +N+L + E +KE I F+ D +KE Y Sbjct: 186 QSVIIKQRNEFLNSLMNKARELYPFFSNEKE---EIGAKYMTFIPIDPDMK-SHMKEAY- 240 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 K+F+ K +TLIG HR D++ + + + S G+++ ++ + L A++I Sbjct: 241 DKVFEKEK---RYHQTLIGIHRDDILFELNENPVCEV-ASQGQKRSFVLALKLGLAQIIY 296 Query: 309 NTTGFAPILLLDEISAHLDE-DKRNALFRIVTDIGSQIFMTGTDK 352 +G PILLLD++ + LD+ KR + ++ D+ QIF+T T++ Sbjct: 297 EKSGQYPILLLDDVFSELDDFRKRQLIEKLPRDM--QIFITTTER 339 >gi|299768253|ref|YP_003730279.1| recombination protein F [Acinetobacter sp. DR1] gi|298698341|gb|ADI88906.1| recombination protein F [Acinetobacter sp. DR1] Length = 360 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 87/360 (24%), Positives = 158/360 (43%), Gaps = 49/360 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66 LNI RN ++ L IF G NG GKT+ILEAI L+ GR FR +Y Sbjct: 6 LNIERVRNLKTVALQGLQPFNIFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYAA 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F + GM+ LA + +++N + +L K L + L Sbjct: 66 EDAIVFAQSSTEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHLD 114 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P I + RR+ LD ++F ++P + R ++ RN LL T + Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174 Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 +++ G ++ R+ ++ N LS L+ P +++ L ++ Sbjct: 175 WNKMLSDYGEILHSQRLGIVEQWNVFFQNDLSQLL---------PDLEIEL------EYS 219 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQK 293 F ++ + L + + D R T GPHR+DL + + D + S G++K Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADVVL-----SRGQKK 273 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 ++++ + L+ ++ + + ++LLD+++A LD + L ++ +GSQ+FMT D + Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332 >gi|195941091|ref|ZP_03086473.1| recombination protein F [Escherichia coli O157:H7 str. EC4024] gi|295095338|emb|CBK84428.1| DNA replication and repair protein RecF [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 357 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 156/359 (43%), Gaps = 15/359 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 SF R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 ESFV-LHGRLQGAERETAIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F + + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLRPWDME 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E ++ + + K+ P L+ + F G ++ +YA+ Sbjct: 181 LIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFS-FQRGWEKET------DYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 233 VLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K + Sbjct: 292 ESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 >gi|295425412|ref|ZP_06818110.1| recombination protein F [Lactobacillus amylolyticus DSM 11664] gi|295064914|gb|EFG55824.1| recombination protein F [Lactobacillus amylolyticus DSM 11664] Length = 375 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 155/353 (43%), Gaps = 26/353 (7%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +RN + FD+ IF+G N GKTN+LEAI FL+ R R +S ++ G+ Sbjct: 8 VQNYRNLEKIDTNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTSSDRELIHFGND- 66 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 +A + G + + + L + + + IN V + + L P Sbjct: 67 ----YANLMGHVHKSQVDLDLRVLITKKGKKVWINRVEQAKLSKYVGQLNAILFSPEDLE 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + G RRRF+D+ I+ + + +++ +N L + D + + Sbjct: 123 LIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLFQKNNYLKQLAKGQAKDQIFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE- 246 Q+A + ++ R + + LS + + + HI L+ + L + S + + Sbjct: 183 DQLAGIAAEVISRRFKFLRYLS-----HSASDAYEHISLA-SEKLAIAYHPSVSNITGDD 236 Query: 247 -----YAKKLFDGRKMDSMSRR---TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 Y K L + +K M R TL GPHR D+ K + + S G+Q+ + + Sbjct: 237 NTETIYHKVLNNFQKTKEMEIRKGTTLSGPHRDDIEFKLDGKDAHL-YASQGQQRSIALS 295 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 I LA +L+ + T P+LLLD++ + LD ++ AL + +Q F+T TD Sbjct: 296 IKLAEIQLVHHLTDEYPLLLLDDVMSELDHGRQRALLNYIHG-KTQTFITTTD 347 >gi|325270881|ref|ZP_08137468.1| recombination protein F [Prevotella multiformis DSM 16608] gi|324986678|gb|EGC18674.1| recombination protein F [Prevotella multiformis DSM 16608] Length = 368 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 89/378 (23%), Positives = 163/378 (43%), Gaps = 45/378 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L A+ F+G NG GKTN+L+A+ +LS + ++V Sbjct: 1 MQLDKLSIINYKNIQAATLNLSARLNCFIGRNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R S F + G +G +K T+ + + N + + + + + Sbjct: 61 IRHDSDYFVLEGDYTTDAGEQGQVYCGMKRGTK-----KHFKWNRKEYKRLSQHIGKVPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 ++ P+ + G S ERRR +D ++ D + + + + ++ RN LL EG D + Sbjct: 116 IFVSPADAALIEGGSEERRRLMDVVISQYDTPYIEALGRYNKALQQRNSLLKQEGEPDPT 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 +E QMAE G + R + L+ + + Q+ C Sbjct: 176 LMELLEMQMAEHGETLYRKRKAFVQELTPVFQ---------------------RIYQTIC 214 Query: 242 ALKE----EYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHGS 288 +E EY G +D + R +L G H+ DL++ + GS Sbjct: 215 CNREQVSLEYVSHCQRGSLLDVIQRDRTKDRIMGFSLHGTHKDDLVMKLGGYPMK-REGS 273 Query: 289 TGEQKVVLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIF 346 G+ K ++ + LA + T+G P+LLLD+I LD + + R+V+ D QIF Sbjct: 274 QGQNKTYVLALKLAQFDFLHRTSGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIF 333 Query: 347 MTGTDKSVFDSLNETAKF 364 +T T++ D + + + F Sbjct: 334 ITDTNRDHLDRILQGSGF 351 >gi|194016619|ref|ZP_03055233.1| DNA replication and repair protein RecF [Bacillus pumilus ATCC 7061] gi|194012092|gb|EDW21660.1| DNA replication and repair protein RecF [Bacillus pumilus ATCC 7061] Length = 370 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 87/358 (24%), Positives = 160/358 (44%), Gaps = 29/358 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ +RNY L FD + + +G+N GKTN++EAI LS + R ++ ++ R Sbjct: 3 IQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + +A++EG + + ++ + + ++N + + + L Sbjct: 63 -----WDQDYAKIEGRVIKKNGPLPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDSSW 182 P + G RRRFLD + + + + +++++ RN +L T D + Sbjct: 118 PEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQRNHYLKQLQTRKQKDQAM 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFL 232 + Q+ + K+ R+ L S +E + + I++S L Sbjct: 178 LEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYHTAIEVSEASDL 237 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 K S+ EE +KL D R++D TL GPHR DL+ + + +GS G+Q Sbjct: 238 -SKIKNSY----EESFQKLRD-REIDRGV--TLWGPHRDDLLF-FVNGRDVQTYGSQGQQ 288 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + + LA LI G PILLLD++ + LD+ +++ L + Q F+T T Sbjct: 289 RTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTT 345 >gi|311742166|ref|ZP_07715976.1| recombination protein F [Aeromicrobium marinum DSM 15272] gi|311314659|gb|EFQ84566.1| recombination protein F [Aeromicrobium marinum DSM 15272] Length = 373 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 89/359 (24%), Positives = 164/359 (45%), Gaps = 23/359 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FR+Y L L A FVG NG GKTN++EA+ +L+ R A+ A + Sbjct: 1 MHVARLALHDFRSYTELDLELSAGPVAFVGANGQGKTNLVEAVDYLARLDSHRVAADAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ R E + +++E RS R ++N + ++ LR Sbjct: 61 VRAGAE---RAVVRAEVVREDRRALLEVEITPGRSNRA-RVNRGDLPRARDIVGILRTVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDSS 181 P + G +RRRFLD ++ PR D++R+++ RN LL G D S Sbjct: 117 FSPEDLALVKGDPSDRRRFLDALLVMRLPRLAGVKADYDRVLKQRNALLKSGRNRQVDIS 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIME---------YVQKENFPHIKLSLTGFL 232 + ++A LG ++ + R+ +++ L + + + + + S T + Sbjct: 177 TLDIWDDKLATLGAELLVHRLTLLDDLGPHLAQAYREVATLAAADRRDVTAVYRSATDGV 236 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGE 291 G D ++E + + + R+ D + R +L+GPHR ++++ D + S GE Sbjct: 237 TGTRD--VAEIREALLRAVAE-RRRDELDRGISLVGPHRDEVVLAVGDLPAK-GYASHGE 292 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + + LA L+ + P+L+LD++ A LD +R+ L +V Q+ +T Sbjct: 293 SWSLALALRLASFELLRSEDD-DPVLILDDVFAELDAGRRDHLAALVGS-AEQVLVTAA 349 >gi|305666506|ref|YP_003862793.1| DNA replication and repair protein RecF [Maribacter sp. HTCC2170] gi|88708773|gb|EAR01008.1| DNA replication and repair protein RecF, ABC family ATPase [Maribacter sp. HTCC2170] Length = 359 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 160/353 (45%), Gaps = 26/353 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVT 65 +K L++ ++N+ S FD++ FVG NGVGKTN L+AI LS G+G F + ++ Sbjct: 3 LKKLSLINYKNFDSQTFEFDSKTNCFVGPNGVGKTNALDAIYHLSFGKGYFNPVATQNIK 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E + I L+ R ++ +I + + L+ H+ + L Sbjct: 63 H--EEDFFVVDGEFEKFDRKEKIVCSLK----RGMK--KIIKRNGKPYERLSDHIGLLPL 114 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYF 178 V P+ + + S RR+F+D ++ D + + +I + +++ RN LL F Sbjct: 115 VIISPADRDLITEGSDTRRKFIDGVISQSDKEYLQILIKYNKVLVQRNSLLKYFVANQTF 174 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D+S S + Q+ G +I R++ + + E + + +++L+ D K + Sbjct: 175 DASTLSVYDEQLHNYGSEIFKKRLDFVATFIPIFKEQYAAISGGNEEVTLS--YDSKLHE 232 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + L + D M + T +G H+ DL I GS G+QK L+ Sbjct: 233 N------DLLTLLATNVEKDRMLQYTSVGIHKDDLSFQIAGHPIK-KFGSQGQQKSFLIA 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGT 350 + A I PILLLD+I LDE++ + +V + QIF++ T Sbjct: 286 LKFAQFHFIKKQAKATPILLLDDIFDKLDENRVAQIVGMVDNENFGQIFISDT 338 >gi|320157814|ref|YP_004190193.1| DNA recombination and repair protein RecF [Vibrio vulnificus MO6-24/O] gi|319933126|gb|ADV87990.1| DNA recombination and repair protein RecF [Vibrio vulnificus MO6-24/O] Length = 359 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 83/365 (22%), Positives = 161/365 (44%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + +G NG GKT++LEAI L GR F+ A V + Sbjct: 6 LIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D + ++I + + +L + L + + P Sbjct: 66 DQLFVHGRFLNSDQFE----LPIGINKQRDGTTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQELSYWDK 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 A++AEL I+ R + + + S + Q E P + L + + + + + E Sbjct: 181 EMARLAEL---ISQWRADYVAQMQSKAEQLCQ-EFLPEFHIQLKYYRGWEKETPYQQILE 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E ++ D T+ GP+++DL + + + S G+ K+++ + LA + Sbjct: 237 ENFER-------DQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG + L+D+ ++ LD +R L + G+Q+F++ T+ + D +++ + Sbjct: 289 HLTEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGRL 348 Query: 365 MRISN 369 + Sbjct: 349 FHVEQ 353 >gi|167548875|ref|ZP_02342634.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325712|gb|EDZ13551.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 357 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 89/360 (24%), Positives = 157/360 (43%), Gaps = 17/360 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ + EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEA 188 + +G RR FLD F + + +RL++ RN L + ++ + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQ--LRPWDK 179 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ L +I+ R E +A++ + + Q + P FL F + + + +YA Sbjct: 180 ELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEF------FLTFSFQRGW-EKETDYA 231 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 232 DVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K + Sbjct: 291 RESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 >gi|152972607|ref|YP_001337753.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330005215|ref|ZP_08305174.1| DNA replication and repair protein RecF [Klebsiella sp. MS 92-3] gi|166220712|sp|A6TG02|RECF_KLEP7 RecName: Full=DNA replication and repair protein recF gi|150957456|gb|ABR79486.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328536347|gb|EGF62709.1| DNA replication and repair protein RecF [Klebsiella sp. MS 92-3] Length = 357 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 157/361 (43%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 DAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F + + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLRPWDLE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E A+ + + Q + P L+ + F G ++ +YA+ Sbjct: 181 LIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFS-FQRGWEKET------DYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D ++ +K R+ Sbjct: 292 VSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSKMFRVE 351 Query: 369 N 369 Sbjct: 352 K 352 >gi|256826463|ref|YP_003150422.1| recF protein [Cryptobacterium curtum DSM 15641] gi|256582606|gb|ACU93740.1| recF protein [Cryptobacterium curtum DSM 15641] Length = 378 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 93/377 (24%), Positives = 165/377 (43%), Gaps = 18/377 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + FRN+ L TI G N GKT+++EAI +S + FR + Sbjct: 11 LRLTNLVLRNFRNHQEFSLKGLQGITILAGPNATGKTSVVEAIQLISALKSFRASQIGRA 70 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + S A +E D+ +++E R ++N R D L Sbjct: 71 IRWGQTAA-SVIATIESDHRQLDLQLRIE----EGKRSYRLNGKARRARD-LRGLFPAVT 124 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 VP + G S RR LD + I D+ +L+R +N+ L + D+ Sbjct: 125 FVPDDLGLAKGPSSARRGALDDLGAQISKNFAMVQSDYTKLVRQKNQALRDEASDTV-ID 183 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCA 242 SI+ + +GV+I R MI L Y ++ + + + + + Sbjct: 184 SIDEVLTLVGVQILSHRSVMIKRLLPYFQLYYERIAQANETADIQYIPCWNEENQTQWTF 243 Query: 243 LKEE----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +EE + L R + + R++++GPH +D +V + S G+Q+ +++ Sbjct: 244 EREECLAIFTSTLQQARLQERLRRKSVVGPH-ADKVVFLINGHDAAHFASQGQQRSLVLA 302 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 LA A +I T PILLLD++ + LD +R+ ++ + QIF+T T+ F D Sbjct: 303 YKLAEAAVIEETLNQRPILLLDDVMSELDHQRRDQFMSMIEE-DIQIFITTTNLEYFTDE 361 Query: 358 LNETA--KFMRISNHQA 372 + E A +++ N++A Sbjct: 362 IKEKALIQYLGGDNNEA 378 >gi|308234057|ref|ZP_07664794.1| DNA replication and repair protein RecF [Atopobium vaginae DSM 15829] gi|328943454|ref|ZP_08240919.1| recombination protein F [Atopobium vaginae DSM 15829] gi|327491423|gb|EGF23197.1| recombination protein F [Atopobium vaginae DSM 15829] Length = 382 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 93/372 (25%), Positives = 158/372 (42%), Gaps = 41/372 (11%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT--RI 67 L + +RN+ LR+ + T+ G N VGKTN +EA+ ++ G FR+ + Sbjct: 8 LTCTNWRNFQHLRISLGDKTTVLHGSNAVGKTNTIEAVQMITTGTSFRKPLLTQMIYHNE 67 Query: 68 GSPSFFSTFA-RVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + + +E +IS +T ++D+ + V+ V Sbjct: 68 NAARLCAVYEDELHSVELACNISTHSKTYLKNDKKCSVSTLCSVMPSV------------ 115 Query: 125 LVPSMDRIFSGLSMERRRF-LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 L D +F + RR +D +R+ + F R + RN +L DS Sbjct: 116 LFSPDDLLFVKQTARYRRSEIDGFGILAHKGYRKLIKTFSRALEQRNNILKLPLSDSDIL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------------KENFPHIKLSLTGF 231 + +A + AR+++IN L S E K + P IK L Sbjct: 176 HAWSVSLAHGSASVVAARLKLINHLYSKACEVYHTISPAEQLEIKYKSSIPLIK-DLEHK 234 Query: 232 LDGKF---DQSFCAL-KEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKAIT 283 ++ + QS +L KE+ + D ++ + + R+ TLIGP R D I Y + Sbjct: 235 VEEPYMYTPQSLSSLSKEDLVQSYLDAFSQKEQEELRRQVTLIGPQRDD-IEFYINGIPA 293 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 + S G+Q+ +++ LA I TG PILLLD++ + LDE +R A+ + G Sbjct: 294 RTYASQGQQRSIVLAWKLAEVLFIKELTGQNPILLLDDVMSELDETRRLAIMEFIQQ-GI 352 Query: 344 QIFMTGTDKSVF 355 Q +T T+ S F Sbjct: 353 QTIITTTNLSYF 364 >gi|37678197|ref|NP_932806.1| recombination protein F [Vibrio vulnificus YJ016] gi|51316312|sp|Q7MQJ5|RECF_VIBVY RecName: Full=DNA replication and repair protein recF gi|37196936|dbj|BAC92777.1| Recombinational DNA repair ATPase [Vibrio vulnificus YJ016] Length = 359 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 83/365 (22%), Positives = 161/365 (44%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + +G NG GKT++LEAI L GR F+ A V + Sbjct: 6 LIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D + ++I + + +L + L + + P Sbjct: 66 DQLFVHGRFLNSDQFE----LPIGINKQRDGTTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQELSYWDK 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 A++AEL I+ R + + + S + Q E P + L + + + + + E Sbjct: 181 EMARLAEL---ISQWRADYVAQMQSKAEQLCQ-EFLPEFHIQLKYYRGWEKETPYQQILE 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E ++ D T+ GP+++DL + + + S G+ K+++ + LA + Sbjct: 237 ENFER-------DQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG + L+D+ ++ LD +R L + G+Q+F++ T+ + D +++ + Sbjct: 289 HLTEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGRL 348 Query: 365 MRISN 369 + Sbjct: 349 FNVEQ 353 >gi|237729022|ref|ZP_04559503.1| recombination protein F [Citrobacter sp. 30_2] gi|226909644|gb|EEH95562.1| recombination protein F [Citrobacter sp. 30_2] Length = 357 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 157/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 SF R++G E I + + D VR I+ V EL + + + P Sbjct: 66 ESFV-LHGRLQGEERETSIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E ++ + + Q + P LS + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLSFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YAEVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|161616953|ref|YP_001590918.1| recombination protein F [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168464834|ref|ZP_02698726.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|189039639|sp|A9MX74|RECF_SALPB RecName: Full=DNA replication and repair protein recF gi|161366317|gb|ABX70085.1| hypothetical protein SPAB_04774 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195632488|gb|EDX50972.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 357 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ + EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|328471240|gb|EGF42142.1| recombination protein F [Vibrio parahaemolyticus 10329] Length = 359 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 87/365 (23%), Positives = 161/365 (44%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + V + Sbjct: 6 LIIQQFRNIKACDIQLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW--CSS 185 + + RR F+D VF +P F+RL + RN LL SS+ S Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTA---SSYRELSY 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R I + + + E + + P ++ L + D + + Sbjct: 178 WDQEMARLAENISQWRSLYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----Q 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E +K F+ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 233 EILEKNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++ K Sbjct: 289 HLTAMTGKQCIYLIDDFASELDSQRRKRLAACLKETGAQVFVSSITENQIADMLDDNGKL 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|268593490|ref|ZP_06127711.1| DNA replication and repair protein RecF [Providencia rettgeri DSM 1131] gi|291310912|gb|EFE51365.1| DNA replication and repair protein RecF [Providencia rettgeri DSM 1131] Length = 364 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 93/362 (25%), Positives = 158/362 (43%), Gaps = 18/362 (4%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I +FRN + L +G NG GKT+ILEAI L GR FR V R Sbjct: 8 IRDFRNIENADLSLANGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRVIRHEQEQ 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F E D+S+ L D + ++I+ + EL K L + + P Sbjct: 68 FILHGKLSHLDEQRNDLSLGLSKNRDGDSK-VRIDGTDGHKIAELAKLLPMQLITPEGFT 126 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSIEA 188 + +G RR F+D F DP D +RL++ RN R +T W + Sbjct: 127 LLNGGPKYRRAFIDWGCFHNDPLFFSVWSDLKRLLKQRNAALRQVTRYEQIRHW----DK 182 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 Q+A L +I+ R I ++ I + Q + P LS++ F G +D+ +Y+ Sbjct: 183 QLAPLSEQISQWRHNYIAGIAENIEQTCQ-QFLPEFSLSVS-FQRG-WDKEI-----DYS 234 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 ++L + D T GPH++DL + + S G+ K+++ + LA + Sbjct: 235 EQLERQFERDRALTYTASGPHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQGEFFT 293 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 + +G + LLD+ ++ LD +R L + +Q+F++ T + V D ++ +K + Sbjct: 294 HQSGQRCLYLLDDFASELDAGRRQLLAARLKATQAQVFVSAITPEQVNDMIDANSKMFSV 353 Query: 368 SN 369 + Sbjct: 354 EH 355 >gi|163787893|ref|ZP_02182339.1| DNA replication and repair protein RecF, ABC family ATPase [Flavobacteriales bacterium ALC-1] gi|159876213|gb|EDP70271.1| DNA replication and repair protein RecF, ABC family ATPase [Flavobacteriales bacterium ALC-1] Length = 359 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 95/363 (26%), Positives = 163/363 (44%), Gaps = 52/363 (14%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVTRIG 68 L++ ++N+ S FDA+ FVG NGVGKTN L+AI L+ G+ F + ++ Sbjct: 6 LSLVNYKNFESQVFDFDAKINCFVGANGVGKTNALDAIYHLAFGKSYFNPIALQNINH-- 63 Query: 69 SPSFF---STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + FF F + E +E + +S+K + + ++ N + ++ ++H+ L Sbjct: 64 NAEFFVVDGNFTKNERVEKII-VSLKRGQK-----KIIKRNG---KAYEKFSEHIGFIPL 114 Query: 126 V---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGY 177 V P+ D I G S RR+F+D ++ D + +I + +++ RN LL Sbjct: 115 VIISPADRDLIIEG-SDTRRKFIDSVISQSDKTYLIELISYNKVLSQRNALLKYFALNNT 173 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 F+ + Q+ G +I R + + KE + I Sbjct: 174 FNRDTLTIYNEQLHTYGTEIFKKRDAFLKIFIPIF-----KERYEAIS------------ 216 Query: 238 QSFCALKEEYAKKLFDGRKMDSMS---------RRTLIGPHRSDLIVDYCDKAITIAHGS 288 QS ++ Y LF+G+ D ++ + T +G H+ DL+ D GS Sbjct: 217 QSKESIDLNYKSDLFEGKLEDLLNNNINKDKTLQYTSVGTHKDDLMF-LIDSFPIKKFGS 275 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFM 347 G+QK L+ + LA I +G +PILLLD+I LDE++ + +V D QIF+ Sbjct: 276 QGQQKSFLIALKLAQFDFIKQQSGVSPILLLDDIFDKLDENRVAQIISLVDDEHFGQIFI 335 Query: 348 TGT 350 + T Sbjct: 336 SDT 338 >gi|260654351|ref|ZP_05859841.1| putative DNA replication and repair protein RecF [Jonquetella anthropi E3_33 E1] gi|260630984|gb|EEX49178.1| putative DNA replication and repair protein RecF [Jonquetella anthropi E3_33 E1] Length = 351 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 19/353 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L FRN A+ ++ F ++ + G+NG GKTN LEA++ L F ++++ Sbjct: 1 MRVVGLRTRRFRNLAAQKVSFSSEMNLITGENGSGKTNFLEALNCLCGWGPFSAGRWSEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 T F +G G + + +R + + +R+ L Sbjct: 61 TCWEENGAFELVGSFDGESG-GTVQVLCASRPSLRLDGDRATWTDVRLFAPCLSFL---- 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P+ + G + RRRFLD + P + RR+ D+ RL+R + LL G Sbjct: 116 --PAHMALIEGGPVVRRRFLDVGTALLYPLYARRLSDWRRLVRHKRYLLRLGKPG----D 169 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL-TGFLDGKFDQSFCAL 243 + M L + + R E + AL + + P +++ L G FD Sbjct: 170 VADRIMKPLAGWLWLKREEFVGALQRELDAQADLLSCP-VQIGLHRGGGGACFDP----- 223 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E++A L + S L+GPHR DL + ++ I + S G+++ + + LA Sbjct: 224 EEDFAAGLERLGPAERKSGLPLVGPHRDDLTLTVSERR-AIDYFSRGQRRRAALALILAA 282 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + G +PILL+DE+++ LDE R + + + G Q+F + D Sbjct: 283 GGAVKSQLGRSPILLIDEVASELDELGRQKVVQALGQSGCQVFAATAEPQSLD 335 >gi|317046241|ref|YP_004113889.1| DNA replication and repair protein RecF [Pantoea sp. At-9b] gi|316947858|gb|ADU67333.1| DNA replication and repair protein RecF [Pantoea sp. At-9b] Length = 361 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 157/361 (43%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEQADLSLAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P+F R+EG E ++++ L T++ ++I+ V EL + L + + P Sbjct: 66 PAFV-LHGRIEGSE--RELAVGL-TKNRAGESKVRIDGSDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F P + RL++ RN L + S + + Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHAAPGFFNAWSNLRRLLKQRNAALRQ-VTRYSQIRPWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E +A+ S I + P +L+ + F G +S +Y + Sbjct: 181 LVPLAEQISAWRAEYSDAICSEITATC-AQFLPEFELAFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + + S G+ K+++ + LA ++ Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEYLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAKFMRIS 368 ++G + L+D+ ++ LD+ +R L + +Q+F++ + V D +E K R+ Sbjct: 292 SSGRRCLYLIDDFASELDDVRRRLLAERLKATQAQVFVSAIGVEHVIDMSDEKGKMFRVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|283480417|emb|CAY76333.1| DNA replication and repair protein recF [Erwinia pyrifoliae DSM 12163] Length = 397 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 151/361 (41%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 42 LLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEQ 101 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R+ G E + + D VR I+ V EL + L + + P Sbjct: 102 DAFV-LHGRIAGAERETSVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 157 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F +P + RL++ RN L + + + + Sbjct: 158 FTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 216 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +A L +I+ R A+++ I + P +LS + F G +S +YA Sbjct: 217 LAPLAEQISQWRAAYSRAIAADINATC-AQFLPEFQLSFS-FQRGWDKES------DYAG 268 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + + S G+ K+++ + LA ++ Sbjct: 269 LLERNFERDRALTYTASGPHKADFRIRAQGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 327 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 G + L+D+ ++ LDE +R+ L + +Q+F++ + VFD +E K + Sbjct: 328 QNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMADEKGKMFHVE 387 Query: 369 N 369 Sbjct: 388 Q 388 >gi|28896787|ref|NP_796392.1| recombination protein F [Vibrio parahaemolyticus RIMD 2210633] gi|153839066|ref|ZP_01991733.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AQ3810] gi|260363486|ref|ZP_05776319.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus K5030] gi|260876545|ref|ZP_05888900.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AN-5034] gi|260897306|ref|ZP_05905802.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus Peru-466] gi|260901414|ref|ZP_05909809.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AQ4037] gi|32129958|sp|Q87TQ5|RECF_VIBPA RecName: Full=DNA replication and repair protein recF gi|28804995|dbj|BAC58276.1| RecF protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747449|gb|EDM58403.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AQ3810] gi|308087832|gb|EFO37527.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus Peru-466] gi|308090410|gb|EFO40105.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AN-5034] gi|308107203|gb|EFO44743.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AQ4037] gi|308113567|gb|EFO51107.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus K5030] Length = 359 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 87/365 (23%), Positives = 161/365 (44%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + V + Sbjct: 6 LIIQQFRNIKACDIQLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW--CSS 185 + + RR F+D VF +P F+RL + RN LL SS+ S Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTA---SSYRELSY 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R I + + + E + + P ++ L + D + + Sbjct: 178 WDQEMARLAENISQWRSLYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----Q 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E +K F+ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 233 EILEKNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++ K Sbjct: 289 HLTAMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITENQIADMLDDNGKL 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|282853042|ref|ZP_06262379.1| DNA replication and repair protein RecF [Propionibacterium acnes J139] gi|282582495|gb|EFB87875.1| DNA replication and repair protein RecF [Propionibacterium acnes J139] gi|327328942|gb|EGE70702.1| RecF protein [Propionibacterium acnes HL103PA1] Length = 394 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 92/366 (25%), Positives = 167/366 (45%), Gaps = 28/366 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ + R Sbjct: 3 VERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 +G+ G + + +++E R+ R + R D L LR Sbjct: 63 LGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTVVFS 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEGYF 178 P+ + G +RR FLD +V PR D+ER+++ RN LL + G Sbjct: 122 PNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAGAE 181 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-----LD 233 + + ++A +G ++ AR++ ++A+ LI +E P L+ + L+ Sbjct: 182 IGATMDIWDNELATIGAELLSARLDTLSAIMPLI-STAYREIAPANDLTTASYKSTIDLE 240 Query: 234 GKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDKAIT 283 G + + S ++E A + D R+ D + R TL+GP R D+I+ + + Sbjct: 241 GLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGEMPA 299 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 300 KGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ-AD 357 Query: 344 QIFMTG 349 Q+ +T Sbjct: 358 QVLVTA 363 >gi|293611382|ref|ZP_06693678.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826254|gb|EFF84623.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123496|gb|ADY83019.1| DNA replication, recombinaison and repair protein [Acinetobacter calcoaceticus PHEA-2] Length = 360 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 159/360 (44%), Gaps = 49/360 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66 LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR +Y + Sbjct: 6 LNIERVRNLKTVALQGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYSA 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F + GM+ LA + +++N + +L K L + + Sbjct: 66 EDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P I + RR+ LD ++F ++P + R ++ RN LL T + Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNISLADLEP 174 Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 +++ G ++ R+ ++ N LS L+ P +++ L ++ Sbjct: 175 WNKMLSDYGEILHSQRLSIVEQWNVFFQNDLSQLL---------PDLEIEL------EYS 219 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQK 293 F ++ + L + + D R T GPHR+DL + + D + S G++K Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADVVL-----SRGQKK 273 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 ++++ + L+ ++ + + ++LLD+++A LD + L ++ +GSQ+FMT D + Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332 >gi|269925147|ref|YP_003321770.1| DNA replication and repair protein RecF [Thermobaculum terrenum ATCC BAA-798] gi|269788807|gb|ACZ40948.1| DNA replication and repair protein RecF [Thermobaculum terrenum ATCC BAA-798] Length = 386 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 99/348 (28%), Positives = 165/348 (47%), Gaps = 31/348 (8%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRAS------YADVTRIGSPSFFSTFARVEGMEG 84 + +G N GKT +LEAI L+ + R S + + G P+F A V Sbjct: 7 LVLGPNASGKTTLLEAIYLLATTKSHRAGSDRELINWNTESEEGVPAFARVAAEVRRRSP 66 Query: 85 L-ADISI-KLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR 141 + +I+I K T +VR +++N V R +D + + + + +D I S+ RR Sbjct: 67 IQVEITILKESTAQGENVRKRIRVNGVNKRAIDLIGQVNVVMFGPQDLDLIVGAPSL-RR 125 Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC---SSIEAQMA----EL- 193 R+L+ + +D ++ R + +ER++ RN L+ + D ++ SI Q A EL Sbjct: 126 RYLNITISQLDHQYVRTLQTYERVVLQRNTLI-KALSDRAFKLRDESINDQFAYWDNELV 184 Query: 194 --GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL---KEE-- 246 G + R+E+++ ++ L K +LS+ + FD L +EE Sbjct: 185 NQGSYLLARRLEILSRMNELASMVHSKLTGSSQELSI-AYKSTLFDSLPLQLDNPREEEI 243 Query: 247 ---YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 Y KK+ D R+ + TL+GPHR D I +GS G+Q+ V++ I LA Sbjct: 244 RDLYIKKIHDLRREELRRGMTLVGPHRDD-ISFLVGGVDVGVYGSRGQQRSVILAIKLAE 302 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 L+ + TG PILLLD++ + LD ++R L + V + Q +T TD Sbjct: 303 VDLMKSITGDLPILLLDDVVSELDPERRRYLLQNVLQLSQQALVTTTD 350 >gi|226942173|ref|YP_002797246.1| recombination protein F [Azotobacter vinelandii DJ] gi|259563355|sp|C1DFU4|RECF_AZOVD RecName: Full=DNA replication and repair protein recF gi|226717100|gb|ACO76271.1| DNA replication and repair protein ,RecF [Azotobacter vinelandii DJ] Length = 365 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 89/348 (25%), Positives = 151/348 (43%), Gaps = 25/348 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 + ++ RN + L + I G NG GKT++LEAI L R FR + V + Sbjct: 6 VTVTAVRNLHPVTLNPSPRINILYGPNGSGKTSLLEAIHLLGLARSFRSQRLSPVIQHEQ 65 Query: 70 PSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 P+ + F +V +G + ++ + + +R I+ +R +L + L + + P Sbjct: 66 PA-CTVFGQVLWNDGRVRNLGVARNRLGELQIR---IDGQNVRSAAQLAESLPLQLINPD 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR+FLD VF ++ R + +R RN L G D ++ + Sbjct: 122 SFRLLEGAPKVRRQFLDWGVFHVEQRFLPAWHRLQTALRQRNSWLRHGRIDPVSQAAWDR 181 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ +I+ R I L + E V E L+L+ + ++S L E A Sbjct: 182 ELCLASEEIDSYRRSYIQVLKP-VFESVLHELVELDGLTLSYYRGWDRERS---LGEVLA 237 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-----STGEQKVVLVGIFLAH 303 L D T GP R+DL + AH S G+QK+V+ + +A Sbjct: 238 ASL----PRDQQLGHTQAGPQRADL------RLRLAAHNAADLLSRGQQKLVVCALKIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 L+ I L+D++ + LDE R AL R++ ++ Q+F+T D Sbjct: 288 GHLVDRARREC-IYLVDDLPSELDEQHRRALCRLLEELHCQVFITCVD 334 >gi|296100374|ref|YP_003610520.1| recombination protein F [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054833|gb|ADF59571.1| recombination protein F [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 357 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 156/359 (43%), Gaps = 15/359 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 SF R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 ESFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F + + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLRPWDME 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E ++ + + K+ P L+ + F G ++ +YA+ Sbjct: 181 LIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFS-FQRGWEKET------DYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K + Sbjct: 292 ESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVMDMSDENSKMFTV 350 >gi|254521265|ref|ZP_05133320.1| DNA replication, recombinaison and repair protein [Stenotrophomonas sp. SKA14] gi|219718856|gb|EED37381.1| DNA replication, recombinaison and repair protein [Stenotrophomonas sp. SKA14] Length = 364 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 84/361 (23%), Positives = 151/361 (41%), Gaps = 9/361 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ L + + R +++ L+ + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MQIRRLALHQLRRFSAADLLPQPGLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + E K R +++ + + L L + Sbjct: 61 VRQGQEALEIFVEWDEQRANHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G S Sbjct: 121 FEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQG-GPSRMLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R + L + +L + G + + + Sbjct: 180 TWDHELAEAGEPLTSRRQHYLERLQQRTVSLAATLA---PQLGIQGL---ELSPGWRRHE 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T +GPHR+D VD+ A S G+ K+ + LA A Sbjct: 234 LPLADALLLARERDRQAGYTSVGPHRADWSVDFHSIPGRDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 + G P++ LD++++ LD + + + + D +QIF+T T+ S L + + Sbjct: 293 EDYAEQRGEWPVIALDDLASELDRTHQARVLQRLLDGPAQIFITATETPSALQDLADITR 352 Query: 364 F 364 F Sbjct: 353 F 353 >gi|314965766|gb|EFT09865.1| recombination protein F [Propionibacterium acnes HL082PA2] Length = 401 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 168/369 (45%), Gaps = 28/369 (7%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175 P+ + G +RR FLD +V PR D+ER+++ RN LL + Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKFLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G + + ++A +G ++ AR++ ++A+ LI E P L+ + Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAIMPLI-STAYHEIAPANDLTTASYKSTI 244 Query: 232 -LDGKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDK 280 L+G + + S ++E A + D R+ D + R TL+GP R D+I+ + + Sbjct: 245 DLEGLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362 Query: 341 IGSQIFMTG 349 Q+ +T Sbjct: 363 -ADQVLVTA 370 >gi|148927269|ref|ZP_01810839.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] gi|147887328|gb|EDK72782.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] Length = 351 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 86/343 (25%), Positives = 152/343 (44%), Gaps = 13/343 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FR+Y + TI G NG GKTN+LEA+ L+ G F RAS ++ +IG Sbjct: 5 LRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSF-RASDQELGQIGM 63 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 ++ AR+ E SI E + ++ V + + +K L + P Sbjct: 64 -DWWRLDARLVANESR---SILFEAEKTTGRKTFILDGVKKQRLTYQHK-LPVVLFEPGD 118 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 R+ G RR F+D ++ ++P + + ++R+++ RN LL + + Sbjct: 119 LRLLHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDVA 178 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 ++E G +I R + L++ + E + H K ++ L F + ++++ Sbjct: 179 LSEYGARIVAERQKYSALLNASLRE--RYRAIAHTKDIVS--LAYSFQEGAESVQQAMVS 234 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L D T +GPHR DLI D +A +IA S GE + + + ++ Sbjct: 235 ALHAHHVRDKALGYTTVGPHRHDLIFSMNDVEATSIA--SRGETRXXXLALKFIEVEMLR 292 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 P+LLLD++ + LD +R AL + + + I T D Sbjct: 293 VYRDQPPLLLLDDVFSELDSTRRMALVEVGSSTQTVITTTNAD 335 >gi|77163565|ref|YP_342090.1| RecF protein [Nitrosococcus oceani ATCC 19707] gi|97180823|sp|Q3JF36|RECF_NITOC RecName: Full=DNA replication and repair protein recF gi|76881879|gb|ABA56560.1| DNA replication and repair protein RecF [Nitrosococcus oceani ATCC 19707] Length = 363 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 86/350 (24%), Positives = 140/350 (40%), Gaps = 23/350 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+I FRN + L I G N GKT+ LEAI L GR FR Sbjct: 2 MHITHLDIRNFRNLKHIELHPSKGVNILSGANSSGKTSFLEAIYLLGLGRSFRTVQLISA 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G S A+V+ + G ++ R+ +IN ++ +L L + + Sbjct: 62 IQAGMESL-RVVAKVKQVGGSHTAGVEFGPAGFRA----RINKDTVKKRSQLATQLPLLY 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + G RR++LD +F ++P ++R ++ RN +L SW Sbjct: 117 MSSYSHVVLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHVLR--VHKPSWQQ 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 I A +L E I +L I+ +Q + T K Sbjct: 175 EINAWNKKLST-----YGEQITSLREAILFKLQDS----VSQLFTALAHQPISPVTMEFK 225 Query: 245 EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + +A+ L + D + T GPHR++ + Y D S G+QKV Sbjct: 226 QGWARTVRLEEILNESLNYDRAAGYTRYGPHRAE-VAFYVDGKDVREILSRGQQKVFCYS 284 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + L+ A L+ T I L+D+ ++ LD D R L ++ +G Q+F T Sbjct: 285 LALSQANLLYRTKEQNCIFLIDDFTSELDADHRKRLLTLLNKLGMQVFAT 334 >gi|261341640|ref|ZP_05969498.1| hypothetical protein ENTCAN_08108 [Enterobacter cancerogenus ATCC 35316] gi|288315997|gb|EFC54935.1| DNA replication and repair protein RecF [Enterobacter cancerogenus ATCC 35316] Length = 357 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 155/359 (43%), Gaps = 15/359 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 SF R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 ESFV-LHGRLQGAERETAIGLSKDKQGDSKVR---IDGTDGHKVAELALLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F + + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLRPWDLE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E ++ + + K+ P L+ + F G ++ +YA Sbjct: 181 LIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFS-FQRGWEKET------DYAD 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K + Sbjct: 292 ESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 >gi|226226221|ref|YP_002760327.1| DNA replication and repair protein RecF [Gemmatimonas aurantiaca T-27] gi|226089412|dbj|BAH37857.1| DNA replication and repair protein RecF [Gemmatimonas aurantiaca T-27] Length = 376 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 155/353 (43%), Gaps = 20/353 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + E+RN+ SL L + +G+NG GKTN+LEA+++L R FR A ADV R G+ Sbjct: 5 LAVREYRNFHSLDLEVPTGGLVVIGENGHGKTNLLEAVAYLGLLRSFRGARDADVIRFGA 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P+F A + +S+ E R + R R+ L + + + Sbjct: 65 PAFH-VRATLHAPAAWHTVSVGYE-RSSKRKRATLDGVEQPRLTSALGALPSVEFSPADV 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPR-------HRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + SG ERRR+LD M+ P +R ++ +++ R + Sbjct: 123 ALVASG-PGERRRYLDVMLALSSPAYLVALQGYRSALLRRNAVLKAAQRSAVRAQEQEAR 181 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYV----QKENFPHIKLSLTGFLDGKFDQ 238 S E +AE G I AR + A + E +++ +S+ G D + D Sbjct: 182 VSVWEPALAEHGGVIVAARHAFVRAQAGYYAELCAAIGERQEALLRYVSVGG--DTRSDA 239 Query: 239 SFCALKEEYA-KKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 L ++ A + F ++ + R TL+GP R DL + + + GS G+Q+ Sbjct: 240 LTDPLMQQDALTRAFTQQRSAELRRGVTLVGPQRDDLQLTLGGRELRT-FGSAGQQRSAA 298 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMT 348 + + L + + G++P+LLLD+ A LD + + ++ G SQ+ + Sbjct: 299 IALRLLELITLRDALGYSPLLLLDDPFAELDLGRAARVLDLLDAAGASQVLLA 351 >gi|283787600|ref|YP_003367465.1| DNA replication and repair protein [Citrobacter rodentium ICC168] gi|282951054|emb|CBG90732.1| DNA replication and repair protein [Citrobacter rodentium ICC168] Length = 357 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 156/360 (43%), Gaps = 17/360 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 SF R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 ESFV-LHGRLQGDERETSIGLSKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEA 188 + +G RR FLD F + + +RL++ RN L + ++ + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQ--LRPWDK 179 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ L +I+ R ++ + + Q + P LS + F G ++ +YA Sbjct: 180 ELIPLAEQISAWRAAYSAGIAQDMADTCQ-QFLPEFTLSFS-FQRGWEKET------DYA 231 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 232 EVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEYLT 290 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K + Sbjct: 291 RESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDENSKMFNV 350 >gi|254435256|ref|ZP_05048763.1| hypothetical protein NOC27_2319 [Nitrosococcus oceani AFC27] gi|207088367|gb|EDZ65639.1| hypothetical protein NOC27_2319 [Nitrosococcus oceani AFC27] Length = 362 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 86/350 (24%), Positives = 140/350 (40%), Gaps = 23/350 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+I FRN + L I G N GKT+ LEAI L GR FR Sbjct: 1 MHITHLDIRNFRNLKHIELHPSKGVNILSGANSSGKTSFLEAIYLLGLGRSFRTVQLISA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G S A+V+ + G ++ R+ +IN ++ +L L + + Sbjct: 61 IQAGMESL-RVVAKVKQVGGSHTAGVEFGPAGFRA----RINKDTVKKRSQLATQLPLLY 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + G RR++LD +F ++P ++R ++ RN +L SW Sbjct: 116 MSSYSHVVLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHVLR--VHKPSWQQ 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 I A +L E I +L I+ +Q + T K Sbjct: 174 EINAWNKKLST-----YGEQITSLREAILFKLQDS----VSQLFTALAHQPISPVTMEFK 224 Query: 245 EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + +A+ L + D + T GPHR++ + Y D S G+QKV Sbjct: 225 QGWARTVRLEEILNESLNYDRAAGYTRYGPHRAE-VAFYVDGKDVREILSRGQQKVFCYS 283 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + L+ A L+ T I L+D+ ++ LD D R L ++ +G Q+F T Sbjct: 284 LALSQANLLYRTKEQNCIFLIDDFTSELDADHRKRLLTLLNKLGMQVFAT 333 >gi|315037234|ref|YP_004030802.1| recombination protein F [Lactobacillus amylovorus GRL 1112] gi|325955725|ref|YP_004286335.1| recombination protein F [Lactobacillus acidophilus 30SC] gi|312275367|gb|ADQ58007.1| recombination protein F [Lactobacillus amylovorus GRL 1112] gi|325332290|gb|ADZ06198.1| recombination protein F [Lactobacillus acidophilus 30SC] gi|327182553|gb|AEA31000.1| recombination protein F [Lactobacillus amylovorus GRL 1118] Length = 375 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 153/353 (43%), Gaps = 26/353 (7%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRN L + FD IF+G N GKTN+LEAI FL+ R R + D IG Sbjct: 8 VQNFRNLKKLDVDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNN--DKELIG--- 62 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F +A + G + + + L + + + IN V + + L P Sbjct: 63 FDGEYANLLGHVQKSQVDLTLRVLITKKGKKVWINRVEQSKLSKYVGQLNAILFSPEDLE 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + G RRRF+D+ I+P + + +++ +N L + D + + Sbjct: 123 LIKGAPALRRRFMDQEFGQINPEYLYFASKYRQVLMQKNNYLKQLSKGKAKDQVFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE- 246 Q+A + ++ R + + LS + + + HI L L + S ++ + Sbjct: 183 DQLAGIAAEVISRRFKFLRYLS-----HYASDAYAHISLGGEK-LAIAYHPSVSDIEADD 236 Query: 247 -----YAKKL--FDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 Y K L F+ K + + T GPHR D+ K + + S G+Q+ + + Sbjct: 237 NTETIYQKILASFERNKATEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIALS 295 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 296 VKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347 >gi|300871522|ref|YP_003786395.1| DNA replication and repair protein RecF [Brachyspira pilosicoli 95/1000] gi|300689223|gb|ADK31894.1| DNA replication and repair protein, RecF [Brachyspira pilosicoli 95/1000] Length = 355 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 159/361 (44%), Gaps = 18/361 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRNY F I G NG GKTNILEAI L G FR ++ + Sbjct: 3 LKELTLRSFRNYNENTFEFSKHINILYGINGCGKTNILEAIYILGNGISFRTRLDRELIK 62 Query: 67 IGSPSFFSTFARVEGM--EGLADISIKLETRDDRSVRCLQINDVVIRVVDEL-NKHLRIS 123 G+ ++F + G+ E + +E + + + IN I L K L + Sbjct: 63 YGNDNYF-----LRGIFKEDDLNYDTNIEIVYQKKTKKVFINKKEITSRKNLIGKILYVI 117 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 +L D + S + RR + + ++ +I + +I + +L++ RN LT D+ Sbjct: 118 FLPNDTDMVTSEPKL-RRDYFNMLISSISNEYLLSLIKYNKLLKMRNIYLTTSPNDAHIY 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + A+++ N ++ + I + K + P+ L+ D A Sbjct: 177 NEDIAKLSLYIANENKKYSMLLEEKMNEIYRTIFKNDNPYKIKYLSTIED-------IAN 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + EY KKL K R T G HR++ Y D +++ S GE++++ + + LA Sbjct: 230 ENEYIKKLESTIKEQIKMRTTYFGIHRAEYQFFYKD-SLSRKFSSQGEKRMLTLIMKLAS 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +++ +PILL+D+ LD KR ++ + +G Q+F+T T+K E+ Sbjct: 289 EKILYEYRKKSPILLIDDAMLELDNIKRESILEYIKTLG-QVFITVTEKEKLSKFEESKV 347 Query: 364 F 364 F Sbjct: 348 F 348 >gi|312137518|ref|YP_004004854.1| DNA replication and repair protein recf [Rhodococcus equi 103S] gi|311886857|emb|CBH46165.1| DNA replication and repair protein RecF [Rhodococcus equi 103S] Length = 408 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 162/353 (45%), Gaps = 35/353 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++ +FR++ ++ + + T+FVG NG GKTN+LEA+ +LS R +S A + R Sbjct: 3 VRKFSLRDFRSWDAVTVDLEPGCTVFVGRNGHGKTNLLEALGYLSTLSSHRVSSDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+P ++ G E + I +E D R+ R +IN R E+ L+ Sbjct: 63 AGAPQAYAGALIANHGRE----LGIDIEINDGRANRA-RINQSPARRPREIVGILQTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYF 178 P + G +RRRFLD ++ A PR D+++++R R+ LL G Sbjct: 118 APEDLSLVRGDPGDRRRFLDELLTARRPRMAGVRADYDKVLRQRSALLKTAGGALRRGAR 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSS-LIMEY--VQKENFP---HIKL 226 S S++ + +A G ++ +R+ +++ L+ L+ Y + E+ P K Sbjct: 178 SSDGASALATLDIWDGHLAAHGAQLLASRLRLVHDLAPHLVASYRSLAPESRPASVRYKS 237 Query: 227 SLTGFLDGKF-------DQSFCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 SL L + D L E + +L + R+ + L+GPHR DL + Sbjct: 238 SLGTSLPPELLDPTREPDPDDVELLEVSFLNELSEMRQREIERGVCLVGPHRDDLELILG 297 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 D+ S GE + + L L+ + G P+L+LD++ A LD +R Sbjct: 298 DQPAK-GFASHGESWSFALSMRLGAFFLLRDD-GSDPVLMLDDVFAELDRKRR 348 >gi|312865752|ref|ZP_07725974.1| DNA replication and repair protein RecF [Streptococcus downei F0415] gi|311098627|gb|EFQ56849.1| DNA replication and repair protein RecF [Streptococcus downei F0415] Length = 270 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 121/269 (44%), Gaps = 15/269 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 +++ FRNYA + F + IF+G N GKTN LEAI FL+ R R TR+ Sbjct: 6 ISLKNFRNYAQMTAEFSSGLNIFLGQNAQGKTNFLEAIYFLALTRSHR-------TRLDK 58 Query: 70 P--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 +F + V G+ + LE R ++N + + + H+ + P Sbjct: 59 ELINFQAKDLSVSGLLQRRGGKLPLEINLSDKGRTTKVNYLKQTKLSDYIGHMTVVLFAP 118 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSI 186 ++ G RR+FLD + I P + + ++ +++ RN L T D + + I Sbjct: 119 EDLQLVKGAPGLRRKFLDIDLGQIKPVYLADLSNYNHVLKQRNAYLKTAQTIDKDYLAVI 178 Query: 187 EAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A+ G ++ R + + L+ +V H+K+S + KF S +K Sbjct: 179 DEQLADFGSRVMEHRYQFVQDLTQEADKHHHVISNQLEHLKISYQSSV--KFQDS-ANIK 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 + + ++L DS + T +GPHR DL Sbjct: 236 QNFQEQLAKSFSRDSFKKNTGVGPHRDDL 264 >gi|150005151|ref|YP_001299895.1| DNA replication and repair protein RecF [Bacteroides vulgatus ATCC 8482] gi|254883286|ref|ZP_05255996.1| DNA replication and repair protein recF [Bacteroides sp. 4_3_47FAA] gi|294778962|ref|ZP_06744378.1| DNA replication and repair protein RecF [Bacteroides vulgatus PC510] gi|319642660|ref|ZP_07997306.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_40A] gi|166220701|sp|A6L3K9|RECF_BACV8 RecName: Full=DNA replication and repair protein recF gi|149933575|gb|ABR40273.1| DNA replication and repair protein RecF [Bacteroides vulgatus ATCC 8482] gi|254836079|gb|EET16388.1| DNA replication and repair protein recF [Bacteroides sp. 4_3_47FAA] gi|294447271|gb|EFG15855.1| DNA replication and repair protein RecF [Bacteroides vulgatus PC510] gi|317385748|gb|EFV66681.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_40A] Length = 371 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 160/366 (43%), Gaps = 37/366 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N L F + F+G NG+GKTN+L+A+ +LS + + R Sbjct: 3 LKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E +G + + L+ R + + + + + L+ H+ L Sbjct: 63 -HEGEFFVIQGFYETDQGEPEEVYCGLKRRQKKQFKRNK------KEYNRLSDHIGFIPL 115 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 V P+ + +G S RRRF+D ++ D + +I + + + RN LL +E FD Sbjct: 116 VMVSPADAELIAGGSDGRRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEFDEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLDG 234 E MA G + R E I + S I + +K N + +++G L Sbjct: 176 LMLVWEEMMASAGEVVFKKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAMSGGL-- 233 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 +KE R+ D + +L G H+ DLI+ D I GS G+ K Sbjct: 234 -----LDIIKE--------SRRRDRVMGYSLKGVHKDDLIMQLGDFPIK-REGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK 352 L+ + LA + T G P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLIALKLAQFDFLKKTGGNTTPLLLLDDIFDKLDAFRVEQIVKLVAGDRFGQIFITDTNR 339 Query: 353 SVFDSL 358 D + Sbjct: 340 DHLDKI 345 >gi|254483301|ref|ZP_05096532.1| RecF/RecN/SMC N terminal domain, putative [marine gamma proteobacterium HTCC2148] gi|214036396|gb|EEB77072.1| RecF/RecN/SMC N terminal domain, putative [marine gamma proteobacterium HTCC2148] Length = 373 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 84/348 (24%), Positives = 163/348 (46%), Gaps = 15/348 (4%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M++ + L I+ RN +RL + +F G NG GKT++LEAI L R FR + Sbjct: 1 MSSDSSLSRLQINHVRNLLGVRLEGIQRVNVFFGHNGSGKTSVLEAIHLLGMARSFRGSI 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + VT + F +E ++ ++ V+ ++I +R V EL ++L Sbjct: 61 KSLVTH--GQDHCTVFGALEPR----STTLGVQRGVTGEVK-IKIAGSPVRTVAELVEYL 113 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + + + +G RR++LD VF ++ R + F+R ++ RN+LL + Sbjct: 114 PVQVINADSFNLLTGSPGARRQYLDWGVFHVEHRFFDQWQRFQRGIKQRNKLLRRVKMPT 173 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + ++A+ G ++ R N L+ +E + + + SLTG L+ ++ + + Sbjct: 174 EELAVWTRELAQSGEVLSGYRESYFNRLTPRFIEIMAQ-----LAPSLTG-LELRYRKGW 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + EY + L + D T +GP R D+ V + + S G+QK+V+ G+ Sbjct: 228 DK-QLEYQQALENSTMTDIEQGYTHVGPQRGDVRV-LTEGHVAADTLSRGQQKLVVCGLK 285 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 LA +L++ L+D++ + LD + + ++ + +Q+F+T Sbjct: 286 LAQGQLMAEMGRGNCTYLVDDLPSELDLQHSSLVCGLLAGMNAQVFIT 333 >gi|238787826|ref|ZP_04631623.1| DNA replication and repair protein recF [Yersinia frederiksenii ATCC 33641] gi|238724169|gb|EEQ15812.1| DNA replication and repair protein recF [Yersinia frederiksenii ATCC 33641] Length = 361 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 155/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L + VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E + + + + D VR I+ V EL + L + + P Sbjct: 66 AEFV-LHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|238754006|ref|ZP_04615365.1| DNA replication and repair protein recF [Yersinia ruckeri ATCC 29473] gi|238707758|gb|EEQ00117.1| DNA replication and repair protein recF [Yersinia ruckeri ATCC 29473] Length = 361 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L A VG NG GKT++LEA+ L GR FR V R Sbjct: 6 LLIKDFRNIESADLAPAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHDC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F RV+ E + + + D VR I+ V EL + L + + P Sbjct: 66 PEFV-LHGRVDSGERELSVGLSKSRQGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRPWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T +GPH++D + + S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|262046285|ref|ZP_06019248.1| recombination protein F [Lactobacillus crispatus MV-3A-US] gi|260573615|gb|EEX30172.1| recombination protein F [Lactobacillus crispatus MV-3A-US] Length = 375 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 86/356 (24%), Positives = 148/356 (41%), Gaps = 32/356 (8%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRN L + FD+ IF+G N GKTN+LEAI FL+ R R + D+ G Sbjct: 8 VQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDLIGFGGE- 66 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F + G + + + L + + + IN V + + L P Sbjct: 67 ----FTNLLGHVHKSQVDLDLRVLITQKGKKVWINRVEQAKLSKYVGQLNAILFSPEDLE 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + G RRRF+D+ I+ + + +++ +N L + D + + Sbjct: 123 LIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQVFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--------LDGKFDQS 239 Q+A + ++ R + + LS + + + HI L F D + D S Sbjct: 183 DQLAGIAAEVVFRRFKFLKYLS-----HYASDAYAHISLGSEQFSIAYHPSVADIQADDS 237 Query: 240 FCALKEEYAKKLFDGRKMDSMSR----RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 EE +K+ + S T GPHR D+ D + S G+Q+ + Sbjct: 238 ----TEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFK-LDGQNAHLYASQGQQRSI 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 293 ALSVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347 >gi|15826868|ref|NP_301131.1| recombination protein F [Mycobacterium leprae TN] gi|221229346|ref|YP_002502762.1| recombination protein F [Mycobacterium leprae Br4923] gi|13432238|sp|P46391|RECF_MYCLE RecName: Full=DNA replication and repair protein recF gi|254790484|sp|B8ZTP0|RECF_MYCLB RecName: Full=DNA replication and repair protein recF gi|13092415|emb|CAC29511.1| putative DNA replication and SOS induction protein [Mycobacterium leprae] gi|219932453|emb|CAR70096.1| putative DNA replication and SOS induction protein [Mycobacterium leprae Br4923] Length = 385 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 160/362 (44%), Gaps = 32/362 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + +FR++ + L + T+F G NG GKTN++EA+ + + R + + R Sbjct: 3 VRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPLIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST EG E +I LE R+ R ++N ++R + E+ LR Sbjct: 63 AGTIRAIVSTIVVNEGRE----CAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------E 175 P + G RRR+LD + P D+++++R R LL + Sbjct: 118 APEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRTALLKSLAAARYRSDQ 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLD 233 G D+ + ++AE G ++ AR++++N L+ + + Q +S LD Sbjct: 178 GVLDT--LDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQLLAPGSRTASISYRASLD 235 Query: 234 -------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 G D++ L+ + L R ++ L+GPHR +L + D+ Sbjct: 236 IGGIAGVGSSDRAL--LQADLLAGLSTRRNVELERGICLVGPHRDELELRLGDQPAK-GF 292 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + + + LA L+ G P+LLLD++ A LD + AL V + Q+ Sbjct: 293 ASHGESWSLAIALRLAAYELL-RADGNEPVLLLDDVFAELDAARCRALA-TVAESAEQVL 350 Query: 347 MT 348 +T Sbjct: 351 VT 352 >gi|259910293|ref|YP_002650649.1| recombination protein F [Erwinia pyrifoliae Ep1/96] gi|224965915|emb|CAX57448.1| DNA replication and repair protein RecF [Erwinia pyrifoliae Ep1/96] Length = 361 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 151/361 (41%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R+ G E + + D VR I+ V EL + L + + P Sbjct: 66 DAFV-LHGRIAGAERETSVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F +P + RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +A L +I+ R A+++ I + P +LS + F G +S +YA Sbjct: 181 LAPLAEQISQWRAAYSRAIAADINATC-AQFLPEFQLSFS-FQRGWDKES------DYAG 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + + S G+ K+++ + LA ++ Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAQGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 G + L+D+ ++ LDE +R+ L + +Q+F++ + VFD +E K + Sbjct: 292 QNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMADEKGKMFHVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|259563367|sp|A3M0Q6|RECF_ACIBT RecName: Full=DNA replication and repair protein recF gi|193075923|gb|ABO10500.2| DNA replication recombination and repair protein [Acinetobacter baumannii ATCC 17978] Length = 360 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 158/360 (43%), Gaps = 49/360 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66 LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR +Y Sbjct: 6 LNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYEA 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F + GM+ LA + +++N + +L K L + + Sbjct: 66 DDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P I + RR+ LD ++F ++P + R ++ RN LL T + Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174 Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 +++ G ++ R+ ++ N LS L+ P +++ L ++ Sbjct: 175 WNKMLSDYGEILHSQRLSIVEQWNVYFQNDLSQLL---------PDLEIEL------EYS 219 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQK 293 F ++ + L + + D R T GPHR+DL + + D + S G++K Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-----SRGQKK 273 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 ++++ + L+ ++ + + ++LLD+++A LD + L ++ +GSQ+FMT D + Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332 >gi|312134085|ref|YP_004001423.1| DNA replication and repair protein recf [Caldicellulosiruptor owensensis OL] gi|311774136|gb|ADQ03623.1| DNA replication and repair protein RecF [Caldicellulosiruptor owensensis OL] Length = 353 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 147/349 (42%), Gaps = 27/349 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + I FR+Y F + + VG+N GKT++LEA+ F G+ F+ D+ Sbjct: 3 IKGIYIENFRSYKQSFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFKSRD-IDLIN 61 Query: 67 IGSPSF-FSTFARVEGMEGLADISIK--LETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 S F A VEG+E + LE R + IND + + EL + Sbjct: 62 FDSQYFKLEMVAEVEGVEYAVGCYVDRILEKR-------IMINDKKVNRLSELITLFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RRRFLD V + P + +++R + RN L + Y Sbjct: 115 FFEPDTTELVKHQPKLRRRFLDMEVAKLYPYMTKVYQEYQRALLSRNAFL-KSYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA- 242 + Q++ LG I R E+I LSS + F H+ L+ ++ S A Sbjct: 174 DVYDVQLSHLGFLILSKRQEIIKKLSS-----EAQRIFGHV-FENKSVLELEYLPSIAAS 227 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +EEY +L D T G HR D + D + S G+ K+ V + LA Sbjct: 228 SEEEYYTELKRWSDKDLNLGYTTRGIHRDDFEI-LIDGKPALDFASEGQIKLAAVSVVLA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 A L P+L+LD++ + LD K+ L + ++ S F+T + Sbjct: 287 SAALYEK-----PVLILDDVFSELDSQKKKNLIKFLSQYQS--FVTSAE 328 >gi|284047391|ref|YP_003397730.1| DNA replication and repair protein RecF [Acidaminococcus fermentans DSM 20731] gi|283951612|gb|ADB46415.1| DNA replication and repair protein RecF [Acidaminococcus fermentans DSM 20731] Length = 378 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 35/371 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + FRNY + + TIF GDN GKTN+LE I + G FR ++ Sbjct: 1 MRLENLRLLHFRNYEQVSIPLGHNITIFYGDNAQGKTNLLEGIHTAARGFSFRTRHEEEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR--CLQINDVVIRVVDELNKHLRI 122 G+ + + + G + + +K R + L N V R E + + Sbjct: 61 PSFGAEEWAAEL-QYRDRYGSSRLLVKRYPVRGRMKKENLLNGNPVTPR---EQYGLVNL 116 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYF 178 P ++ G RR+FLD + + P + + + R+++ RNR L + Sbjct: 117 VLFTPDDLQLVKGDPALRRKFLDMEIAQVSPVYYDLLAQYNRVLQQRNRFLKQCRDREKL 176 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINAL---------------SSLIMEYVQKENFPH 223 + + + +A+L I R++ ++ + +L + YVQK Sbjct: 177 EEAQLLVWDGALAQLAAGILDHRLQALSGILQAARQVYDGITGTQEALTLSYVQKRG--- 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 G + + A + Y ++L ++D + T +GPHR DL + + + + Sbjct: 234 -----DGEETVRENPGPGAWEGFYREQLRLRHRLDYLRGYTSLGPHRDDLEIFHEGRPLR 288 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 A+GS G+Q+ + + L+ I + P+LLLD++ + LD+ +R L + Sbjct: 289 -AYGSQGQQRTAALALKLSELEFIRSVREEYPVLLLDDVLSELDQHRREKLLGFINGT-V 346 Query: 344 QIFMTGTDKSV 354 Q F+T D+ + Sbjct: 347 QTFLTVNDRHL 357 >gi|169794209|ref|YP_001712002.1| recombination protein F [Acinetobacter baumannii AYE] gi|184156323|ref|YP_001844662.1| recombination protein F [Acinetobacter baumannii ACICU] gi|213155388|ref|YP_002317433.1| DNA replication, recombination and repair protein [Acinetobacter baumannii AB0057] gi|215481764|ref|YP_002323946.1| DNA replication and repair protein recF [Acinetobacter baumannii AB307-0294] gi|260558095|ref|ZP_05830306.1| recombinational DNA repair ATPase [Acinetobacter baumannii ATCC 19606] gi|301345943|ref|ZP_07226684.1| recombination protein F [Acinetobacter baumannii AB056] gi|301512867|ref|ZP_07238104.1| recombination protein F [Acinetobacter baumannii AB058] gi|301594682|ref|ZP_07239690.1| recombination protein F [Acinetobacter baumannii AB059] gi|332854715|ref|ZP_08435502.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6013150] gi|332865595|ref|ZP_08436435.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6013113] gi|332873309|ref|ZP_08441264.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6014059] gi|259563348|sp|B7GUX7|RECF_ACIB3 RecName: Full=DNA replication and repair protein recF gi|259563349|sp|B7IBH5|RECF_ACIB5 RecName: Full=DNA replication and repair protein recF gi|259563350|sp|B2HZA5|RECF_ACIBC RecName: Full=DNA replication and repair protein recF gi|259563352|sp|B0VAF5|RECF_ACIBY RecName: Full=DNA replication and repair protein recF gi|169147136|emb|CAM84995.1| DNA replication, recombinaison and repair protein [Acinetobacter baumannii AYE] gi|183207917|gb|ACC55315.1| Recombinational DNA repair ATPase (RecF pathway) [Acinetobacter baumannii ACICU] gi|213054548|gb|ACJ39450.1| DNA replication, recombination and repair protein [Acinetobacter baumannii AB0057] gi|213987177|gb|ACJ57476.1| DNA replication and repair protein recF [Acinetobacter baumannii AB307-0294] gi|260408449|gb|EEX01756.1| recombinational DNA repair ATPase [Acinetobacter baumannii ATCC 19606] gi|322506192|gb|ADX01646.1| recF, DNA replication, recombinaison and repair protein [Acinetobacter baumannii 1656-2] gi|332727872|gb|EGJ59274.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6013150] gi|332735247|gb|EGJ66324.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6013113] gi|332738515|gb|EGJ69387.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6014059] Length = 360 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 158/360 (43%), Gaps = 49/360 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66 LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR +Y Sbjct: 6 LNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYEA 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F + GM+ LA + +++N + +L K L + + Sbjct: 66 DDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P I + RR+ LD ++F ++P + R ++ RN LL T + Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174 Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 +++ G ++ R+ ++ N LS L+ P +++ L ++ Sbjct: 175 WNKMLSDYGEILHSQRLSIVEQWNVYFQNDLSQLL---------PDLEIEL------EYS 219 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQK 293 F ++ + L + + D R T GPHR+DL + + D + S G++K Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-----SRGQKK 273 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 ++++ + L+ ++ + + ++LLD+++A LD + L ++ +GSQ+FMT D + Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332 >gi|313792565|gb|EFS40651.1| recombination protein F [Propionibacterium acnes HL110PA1] gi|313803566|gb|EFS44748.1| recombination protein F [Propionibacterium acnes HL110PA2] gi|313839625|gb|EFS77339.1| recombination protein F [Propionibacterium acnes HL086PA1] gi|314963870|gb|EFT07970.1| recombination protein F [Propionibacterium acnes HL082PA1] gi|315078996|gb|EFT51008.1| recombination protein F [Propionibacterium acnes HL053PA2] gi|327457411|gb|EGF04066.1| recombination protein F [Propionibacterium acnes HL092PA1] Length = 401 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 169/370 (45%), Gaps = 28/370 (7%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A TIF+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMAAGATIFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175 P+ + G +RR FLD +V PR D+ER+++ RN LL + Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G + + ++A +G ++ AR++ ++A+ L +E P L+ + Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTI 244 Query: 232 -LDGKF------DQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDK 280 L+G + + S ++E A + D R+ D + R TL+GP R D+I+ + + Sbjct: 245 DLEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362 Query: 341 IGSQIFMTGT 350 Q+ +T Sbjct: 363 -ADQVLVTAA 371 >gi|91228346|ref|ZP_01262274.1| recombination protein F [Vibrio alginolyticus 12G01] gi|269965276|ref|ZP_06179397.1| recF protein [Vibrio alginolyticus 40B] gi|91188106|gb|EAS74410.1| recombination protein F [Vibrio alginolyticus 12G01] gi|269830077|gb|EEZ84305.1| recF protein [Vibrio alginolyticus 40B] Length = 359 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 84/365 (23%), Positives = 160/365 (43%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEA+ L GR F+ + V + Sbjct: 6 LIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF +P + F+RL + RN LL Y + S+ Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYQAWGRFKRLNKQRNALLKTANSYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R I + + + E + + P ++ L + D + Sbjct: 179 -DQEMAGLAENISQWRASYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----H 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E +K F+ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 233 EILEKNFE---RDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ G I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++ K Sbjct: 289 HLTEMAGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDNGKL 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|145637297|ref|ZP_01792958.1| recombination protein F [Haemophilus influenzae PittHH] gi|145269549|gb|EDK09491.1| recombination protein F [Haemophilus influenzae PittHH] Length = 359 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 160/367 (43%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ F Q + Sbjct: 176 VWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362 + I L+D+ ++ LD+ KR L + GSQ+F+T K + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|257437731|ref|ZP_05613486.1| DNA replication and repair protein RecF [Faecalibacterium prausnitzii A2-165] gi|257200038|gb|EEU98322.1| DNA replication and repair protein RecF [Faecalibacterium prausnitzii A2-165] Length = 373 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 89/367 (24%), Positives = 155/367 (42%), Gaps = 28/367 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L ++ +RN AS L + T+ G+NG GKTN+LEAI L+ G+ FR A++ Sbjct: 1 MRLLSLEVTNYRNIASASLTPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 65 TRIGSP--SFFSTFARVEGMEGLAD----ISIKLETRD-DRSVRCLQINDVVIRVVDELN 117 R G P ++ R + E D + + + T D R R +N R L Sbjct: 61 VRRGEPFAVLEASTLRAQQEEQEPDEPNRVRLTVGTPDSQRPGRYASVNGAAPRRAAGLA 120 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---- 173 P + G RR+FLD + + P + + R ++ +N LL Sbjct: 121 GSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLTVYRRYLRALQQKNALLRRSP 180 Query: 174 ---TEGYFDS-SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 Y + + + ++A G I R + L+ L E H + Sbjct: 181 AGQERPYAEKMALLEVLNTELAAQGEAIQQRRRAYLERLAPLAC--ANYEELSHGAERME 238 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSM-SRRTLIGPHRSDLIVDYCDKAITIAHGS 288 +F+ A L R+ + + + ++L GPHR D+ + D S Sbjct: 239 LRYAAQFEPGGLA-------ALLKARQNEEVRAGQSLCGPHREDMEL-LLDGQPARVFAS 290 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+Q+ V++ + +A A + TG P+LLLD++ + LD+ ++ L + + Q F+T Sbjct: 291 QGQQRSVVLSLKMAEAAAAAAITGEHPVLLLDDVLSELDDGRKQYLLTRMRE--KQTFVT 348 Query: 349 GTDKSVF 355 D + F Sbjct: 349 SCDDTAF 355 >gi|28197948|ref|NP_778262.1| recombination protein F [Xylella fastidiosa Temecula1] gi|182680575|ref|YP_001828735.1| recombination protein F [Xylella fastidiosa M23] gi|32129956|sp|Q87FC4|RECF_XYLFT RecName: Full=DNA replication and repair protein recF gi|226737849|sp|B2I5U9|RECF_XYLF2 RecName: Full=DNA replication and repair protein recF gi|28056008|gb|AAO27911.1| DNA replication and repair RecF protein [Xylella fastidiosa Temecula1] gi|182630685|gb|ACB91461.1| DNA replication and repair protein RecF [Xylella fastidiosa M23] gi|307579029|gb|ADN62998.1| recombination protein F [Xylella fastidiosa subsp. fastidiosa GB514] Length = 364 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 82/333 (24%), Positives = 154/333 (46%), Gaps = 31/333 (9%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI- 88 F+G+NG GKT++LEA+ + GR FR + R GS E +E D Sbjct: 26 NFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGLIRHGS----------ENLEIFVDWQ 75 Query: 89 -SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR--------ISWLVPSMDRIFSGLSME 139 + + R R+ + + R+ + HL I++ S I S + Sbjct: 76 ETALINARRRRAGLSHYGQEWIGRLDGQKIMHLASLCAALAVITFESSSYQLINSNAEL- 134 Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199 RRRFLD +F ++P + +++ RN LL + + + + + +++E+G ++ Sbjct: 135 RRRFLDWGLFHVEPDFLDLWRRYTHVLKQRNSLLKQKE-ELAMLEAWDQKLSEVGEQLTF 193 Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 R + + L ++ + + P++K+ GF F+ + + LF R+ D Sbjct: 194 RRFQYLERLKQRVIPLISRIT-PNLKIH--GF---NFNHGWRRHELPLIDALFISRERDY 247 Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILL 318 T +GPHRSD + +I H S G+ K++ + LA A+ + G PIL Sbjct: 248 QYGYTSLGPHRSDWTPQFS--SIPGVHFLSRGQGKLITLMCLLAQAQDFFDQRGEWPILA 305 Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LD++++ LD+ + + ++ +I +Q+ +TGT+ Sbjct: 306 LDDLASELDQKHQWRVLEMLAEIPAQVLITGTE 338 >gi|295691866|ref|YP_003600476.1| DNA replication and repair protein recf [Lactobacillus crispatus ST1] gi|295029972|emb|CBL49451.1| DNA replication and repair protein recF [Lactobacillus crispatus ST1] Length = 375 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 87/354 (24%), Positives = 154/354 (43%), Gaps = 28/354 (7%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRN L + FD+ IF+G N GKTN+LEAI FL+ R R + D+ G Sbjct: 8 VQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDLIGFGG-E 66 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVVDELNKHLRISWLVPSMD 130 F + V + D+ + L T+ + V ++ + + V +LN L P Sbjct: 67 FTNLLGHVHKSQVELDLRV-LITQKGKKVWINRVEQAKLSKYVGQLNAIL----FSPEDL 121 Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSI 186 + G RRRF+D+ I+ + + +++ +N L + D + + Sbjct: 122 ELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQVFLDVL 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK-- 244 Q+A + ++ R + + LS + + + HI L + L + S ++ Sbjct: 182 SDQLAGIAAEVVFRRFKFLKYLS-----HYASDAYAHISLG-SEQLSIAYHPSVADIQAD 235 Query: 245 ---EEYAKKLFDGRKMDSMSR----RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 EE +K+ + S T GPHR D+ D + S G+Q+ + + Sbjct: 236 DSTEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFK-LDGQNAHLYASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347 >gi|186686202|ref|YP_001869398.1| recombination protein F [Nostoc punctiforme PCC 73102] gi|226737816|sp|B2IVZ4|RECF_NOSP7 RecName: Full=DNA replication and repair protein recF gi|186468654|gb|ACC84455.1| DNA replication and repair protein RecF [Nostoc punctiforme PCC 73102] Length = 374 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 169/368 (45%), Gaps = 33/368 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K LN+ +FRNY ++ F A TI VG+N GK+N+LEA+ L+ R R D+ + Sbjct: 3 LKTLNLRQFRNYQDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMTRDRDLVQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + A +E G++D+++ L RSV + + R +D L + + Sbjct: 63 EGE-AIAQINATLERQTGVSDLTLTLRRNGRRSVAL--NGESIRRQMDFLGVLNAVQFSS 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183 +D + G RR +LD ++ ++P + + + ++R RN L E +S Sbjct: 120 LDLDLVRGG-PEGRRNWLDTLLIQLEPVYAHILQQYNHVLRQRNAFLKRHVETLDATSLH 178 Query: 184 SSI---EAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLTG 230 S + +AQ+A G ++ R I L+ + E +Q + P+I Sbjct: 179 SELAVWDAQLATTGTRVIRRRDRAIQRLAPIASAWHASISGSTEALQIKYLPNIPSEDNH 238 Query: 231 FLDGKFDQSF-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + Q+F +++ +L G TL+GPHR D I ++ +GS Sbjct: 239 --PEEVQQAFLVKIQQRAIAELHQG--------TTLVGPHR-DEIELTINQTPARQYGSQ 287 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ +++ + LA +LI P+LLLD++ A LD ++N L + D Q +T Sbjct: 288 GQQRTLVLALKLAELQLIEEVVKEPPLLLLDDVLAELDLSRQNQLLDAIQD-RFQTLITT 346 Query: 350 TDKSVFDS 357 T FDS Sbjct: 347 THLGSFDS 354 >gi|238793145|ref|ZP_04636773.1| DNA replication and repair protein recF [Yersinia intermedia ATCC 29909] gi|238727518|gb|EEQ19044.1| DNA replication and repair protein recF [Yersinia intermedia ATCC 29909] Length = 370 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 93/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L A VG NG GKT++LEAI L GR FR V R Sbjct: 15 LLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 74 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E + I + + D VR I+ V EL + L + + P Sbjct: 75 AEFV-LHGRVDVNERESSIGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQLITPEG 130 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + Sbjct: 131 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRPWDQE 189 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 190 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 241 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T IGPH++D + + S G+ K+++ + LA ++ Sbjct: 242 LLERQFERDRALTYTAIGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 300 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 301 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 360 Query: 369 N 369 + Sbjct: 361 H 361 >gi|262273132|ref|ZP_06050949.1| DNA recombination and repair protein RecF [Grimontia hollisae CIP 101886] gi|262222888|gb|EEY74196.1| DNA recombination and repair protein RecF [Grimontia hollisae CIP 101886] Length = 358 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 89/379 (23%), Positives = 164/379 (43%), Gaps = 51/379 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I + RN + L + VG NG GKT++LEA+ +L GR FR V R Sbjct: 6 LSIHDLRNIEACDLSLSSGFNFLVGPNGSGKTSVLEAVYYLGHGRSFRSPLTGRVIRHQQ 65 Query: 70 PSFFSTFARVE--------GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R++ G++ D S +++ ++R + +Q+ +V L Sbjct: 66 DRLV-VHGRIQHGDTLLPVGLQKNRDGSTEVKIGEERGQKLVQLAEV-----------LP 113 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFD 179 + + P + +G RR F+D VF ++P+ +RL + RN L+ Y + Sbjct: 114 MQLITPEGFELLTGGPKFRRAFIDWGVFHVEPQFYPVWARVKRLTKQRNALMKTARSYRE 173 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALS--------SLIMEYVQKENFPHIKLSLTGF 231 S+ +A++A L +I+ R E I L+ + + EY I+LS + Sbjct: 174 LSYW---DAELAPLANQIDQWRKEYIEKLAERAAKLCEAFLPEY-------EIRLSYSRG 223 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 D + YA L D D T+ GPH++DL + + S G+ Sbjct: 224 WDKETG---------YADLLRDNFLRDQQLGYTVSGPHKADLRLRVGGTPVEDVL-SRGQ 273 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-T 350 K+++ + LA + +++ I L+D+ ++ LD +R L + G+Q+F++ + Sbjct: 274 LKLMVCALRLAQGQQLTDDKKKQCIYLIDDFASELDSQRRALLAEQLKATGAQVFVSAIS 333 Query: 351 DKSVFDSLNETAKFMRISN 369 V + +E +K + + Sbjct: 334 ADQVAEMCDENSKMFHVEH 352 >gi|288932895|ref|YP_003436954.1| DNA replication and repair protein RecF [Klebsiella variicola At-22] gi|288887624|gb|ADC55942.1| DNA replication and repair protein RecF [Klebsiella variicola At-22] Length = 357 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 90/361 (24%), Positives = 157/361 (43%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F + + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLRPWDLE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E A+ + + Q + P L+ + F G ++ +YA+ Sbjct: 181 LIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFS-FQRGWEKET------DYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D ++ +K R+ Sbjct: 292 VSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSKMFRVE 351 Query: 369 N 369 Sbjct: 352 K 352 >gi|204928659|ref|ZP_03219858.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322092|gb|EDZ07290.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 357 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 158/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ + EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|260553770|ref|ZP_05826040.1| recombinational DNA repair ATPase [Acinetobacter sp. RUH2624] gi|260405074|gb|EEW98574.1| recombinational DNA repair ATPase [Acinetobacter sp. RUH2624] Length = 360 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 81/352 (23%), Positives = 156/352 (44%), Gaps = 33/352 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66 LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR +Y Sbjct: 6 LNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYEA 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F + GM+ LA + +++N + +L K L + + Sbjct: 66 DDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P I + RR+ LD ++F ++P + R ++ RN LL T + Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ G ++ R+ ++ + + ++ P +++ L ++ F ++ Sbjct: 175 WNKMLSNYGEILHSQRLSIVEQWNVYFQNDL-RQLLPDLEIEL------EYSPGFHT-EQ 226 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQKVVLVGIFL 301 + L + + D R T GPHR+DL + + D + S G++K++++ + L Sbjct: 227 GLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-----SRGQKKLLIIALKL 281 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + ++ + + ++LLD+++A LD + L ++ +GSQ+FMT D + Sbjct: 282 SQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332 >gi|322617251|gb|EFY14156.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619061|gb|EFY15947.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625128|gb|EFY21956.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630179|gb|EFY26950.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634395|gb|EFY31129.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635280|gb|EFY31995.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642909|gb|EFY39492.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647624|gb|EFY44111.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650570|gb|EFY46977.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656404|gb|EFY52696.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661584|gb|EFY57807.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661665|gb|EFY57884.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668221|gb|EFY64379.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672850|gb|EFY68958.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674969|gb|EFY71055.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683659|gb|EFY79672.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687735|gb|EFY83704.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192050|gb|EFZ77285.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200532|gb|EFZ85610.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204958|gb|EFZ89943.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206701|gb|EFZ91658.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211773|gb|EFZ96606.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218635|gb|EGA03342.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220036|gb|EGA04506.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224806|gb|EGA09071.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232485|gb|EGA16587.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235260|gb|EGA19345.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241048|gb|EGA25085.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241402|gb|EGA25434.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248633|gb|EGA32563.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252068|gb|EGA35928.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258628|gb|EGA42291.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262341|gb|EGA45899.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268177|gb|EGA51653.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270591|gb|EGA54036.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 357 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 158/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ + EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|296392443|ref|YP_003657327.1| DNA replication and repair protein RecF [Segniliparus rotundus DSM 44985] gi|296179590|gb|ADG96496.1| DNA replication and repair protein RecF [Segniliparus rotundus DSM 44985] Length = 401 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 158/377 (41%), Gaps = 31/377 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ I +FR++ + D T+F+G NG GKTN++EA+ LS R A A + Sbjct: 1 MRVSSFEIRDFRSWEHAAMRLDEGCTLFLGRNGYGKTNLVEALGVLSSLSSHRGAQNAAM 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ +F S EG + +++ L ++ + Q+N V R E+ LR Sbjct: 61 VRRGAAEAFLSAEVLNEGRK----LTVGLRIAPGKATKA-QLNG-VNRPTREVAGILRTV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GY 177 + P + G ERRRFLD + PR DFER++R R LL Sbjct: 115 FFSPEDLALVRGEPGERRRFLDETLIVRQPRMAGVKADFERVLRQRATLLKSLSGARGAA 174 Query: 178 FDSSWCSSIEA---QMAELGVKINIARVEMINALSSLI-------------MEYVQKENF 221 + +++EA Q A + +AR++++ ALS + E + + Sbjct: 175 RNDEARATLEAWDEQFASRAAALTVARLDLVRALSPRVGRCYAAIDPLSDDAELRYRMSA 234 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 TG + S + ++L R+ + + L+GPHR DL + A Sbjct: 235 EDADQEETGGEAPVGETSEPQVANAVMERLSQLREEELRRGQCLVGPHRDDLELRLAGGA 294 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 A S GE + + +A L+ G P+L+LD++ A LD +R + + Sbjct: 295 AR-AFVSHGEAWSYALALRVAAFELLRE-EGHDPVLVLDDVFAELDGPRREVVAGLAKKA 352 Query: 342 GSQIFMTGTDKSVFDSL 358 + +V D L Sbjct: 353 EQTLITAADPATVPDGL 369 >gi|289705898|ref|ZP_06502277.1| DNA replication and repair protein RecF [Micrococcus luteus SK58] gi|289557383|gb|EFD50695.1| DNA replication and repair protein RecF [Micrococcus luteus SK58] Length = 404 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 149/351 (42%), Gaps = 48/351 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +++FR+Y L + T+ +G NGVGKTN++EAI +L + R +S A + R Sbjct: 3 LSHLTVADFRSYRWADLELTSGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQLVR 62 Query: 67 IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G AR+ G G ++++LE RS R +R + L LR Sbjct: 63 FG-----RDRARIAGRVHRGSRTVALELEILPGRSNRVAINRGAPVRAKEGLGI-LRTVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + +G RRR LD+++ + P D+ER++R RN LL W Sbjct: 117 FAPEDLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSSRGSRRWGP 176 Query: 185 SIEAQMA-------ELGVKINIARVEMINALSSLIME-------------YVQKENFP-- 222 +A +A G ++ R+ ++ L+ + E Y + P Sbjct: 177 EEDATLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLA 236 Query: 223 ---HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 H ++ L ++ + +EE + TL+GPHR +L + + Sbjct: 237 RGTHAEVPAVADLAADMRRTLESQREEERARSL-----------TLVGPHRDELAL-FLG 284 Query: 280 KAITIAHGSTGEQKVVLVGIFL-AHARLISN--TTGFAPILLLDEISAHLD 327 A + S GE + + + + A+ L+++ P+L+LD++ A LD Sbjct: 285 PAPARGYASHGETWSLALALRMAAYDVLVADDPDPDARPVLILDDVFAELD 335 >gi|146309670|ref|YP_001174744.1| recombination protein F [Enterobacter sp. 638] gi|166918723|sp|A4W4R3|RECF_ENT38 RecName: Full=DNA replication and repair protein recF gi|145316546|gb|ABP58693.1| DNA replication and repair protein RecF [Enterobacter sp. 638] Length = 357 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 89/359 (24%), Positives = 156/359 (43%), Gaps = 15/359 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQVGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 SF R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 ESFI-LHGRLQGSERETSIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F + + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQVRPWDME 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E ++ + + K+ P L+ + F G ++ +YA+ Sbjct: 181 LVPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFS-FQRGWEKET------DYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 233 VLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D ++ +K + Sbjct: 292 ESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSKMFTV 350 >gi|332521002|ref|ZP_08397462.1| DNA replication and repair protein RecF [Lacinutrix algicola 5H-3-7-4] gi|332043532|gb|EGI79728.1| DNA replication and repair protein RecF [Lacinutrix algicola 5H-3-7-4] Length = 359 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 85/363 (23%), Positives = 153/363 (42%), Gaps = 46/363 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N+ S F+ VG+NGVGKTN+L+AI LS G+ + + + Sbjct: 3 LKSLSLLNYKNFDSKTFEFNDTINCLVGNNGVGKTNVLDAIYHLSFGKSYFNPIASQNIK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 FF I + L+ + ++ + ++ ++H+ LV Sbjct: 63 -HDEDFFVVNGEYNKENKSEKIVVSLKRGQKKVIKR------NAKAYEKFSEHIGFLPLV 115 Query: 127 ---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 P+ + + S+ RR+F+D ++ D + +I + + + RN LL F+ Sbjct: 116 IISPADRDLITEGSVTRRKFIDSVISQSDKFYLEHLIKYNKALAQRNSLLKYFALNNTFN 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---- 235 AQ+ G E+ N +S + ++ P K +G Sbjct: 176 QDTLDIYNAQLHTFGT-------EVFNKRNSFLETFI-----PIFKSRYQAISNGNEIVD 223 Query: 236 -------FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 FD +L ++ K D + T +G H+ DL+ + + I GS Sbjct: 224 LVYKSDLFDNELESLLKKVINK-------DKAVQYTSVGVHKDDLLFNIDEHPIK-KFGS 275 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFM 347 G+QK L+ + LA I +G PILLLD+I LDE++ + ++V D Q+F+ Sbjct: 276 QGQQKSFLIALKLAQFDFIKQQSGVNPILLLDDIFDKLDEERVTQIIKLVDDENFGQLFI 335 Query: 348 TGT 350 + T Sbjct: 336 SDT 338 >gi|315925614|ref|ZP_07921824.1| recombination protein F [Pseudoramibacter alactolyticus ATCC 23263] gi|315621155|gb|EFV01126.1| recombination protein F [Pseudoramibacter alactolyticus ATCC 23263] Length = 372 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 91/351 (25%), Positives = 158/351 (45%), Gaps = 22/351 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNYAS + F + G N GKTN+LEA+ FL+ G R + AD+ + Sbjct: 6 LQLKHFRNYASEQFDFSDHINVITGANAQGKTNLLEALFFLARGYSHRATTVADLLQFEQ 65 Query: 70 PSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 P+FF+ V +G+ +IS + E R + L I+ K + P Sbjct: 66 PAFFARAGIVR--DGIRHEISARYENRR----KVLTIDGKKEPKHAAAGKIVHTILFEPD 119 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI-- 186 RI +RRRF++ + P + + + + + RN LL E +S S + Sbjct: 120 DLRIVKAGPEKRRRFMNEEISGHMPGYLPVLGHYRKALAQRNALLKEIRHAASLKSLLAG 179 Query: 187 -EAQMAELGVKI---NIARVEMINALSSLIMEYVQKENFPHIKLSL-TGFLDGKFDQSFC 241 +AQ+ G ++ A ++ +NA++ + + + ++LS +D DQ Sbjct: 180 WDAQLVHYGARLIRYRQAYLKRLNAVAQQLHTGL-SDGREALRLSYRNNVIDQPADQE-- 236 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIF 300 A+ + ++L + D T GP D+ V C D + S G+Q+ + + Sbjct: 237 AIARRFDERLKASVEEDIARGSTATGPQVDDMQV--CIDGREARKYASQGQQRTAAIALK 294 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 L+ + + TG PI+LLD+I + LD ++ + I+ +Q F+T TD Sbjct: 295 LSQIEIYRHATGDWPIVLLDDILSELDAVRQEKILAILGR--TQAFITCTD 343 >gi|238783050|ref|ZP_04627077.1| DNA replication and repair protein recF [Yersinia bercovieri ATCC 43970] gi|238716051|gb|EEQ08036.1| DNA replication and repair protein recF [Yersinia bercovieri ATCC 43970] Length = 361 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L + VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E + + + + D VR I+ V EL + L + + P Sbjct: 66 AEFV-LHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRPWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 181 IVPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T IGPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTAIGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|229496502|ref|ZP_04390216.1| RecF protein [Porphyromonas endodontalis ATCC 35406] gi|229316399|gb|EEN82318.1| RecF protein [Porphyromonas endodontalis ATCC 35406] Length = 372 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 160/359 (44%), Gaps = 17/359 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + F++ A+ F + F G NG+GKTN+L+AI +LS R R Sbjct: 3 LEHLELVAFKSIATASCDFAPKLNCFFGGNGMGKTNLLDAIHYLSMARSHLNTVDRLAIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 IGS + S R E I+++L + L N R+ L++H+ L Sbjct: 63 IGSTEAILSGDYRANEGEETDRIALRLRMG---QAKALSRNG---RLYKRLSEHIGRYPL 116 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 V P R+ G S ERR +LDR++ D + +I ++R ++ RN LL + D Sbjct: 117 VIISPQDYRLIRGGSDERRNWLDRLLSQHDALYLDLLIRYDRALQQRNTLLKSDFQDEML 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S +E QMA GV+I R E + + + Q+ + +L Sbjct: 177 LSIVEEQMALTGVEIAQKRAEFVRDFTPTFNQLYQEICGDKSECVTLNYLTATAPN---- 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +E + + L R+ + + T G H+ DL + + + GS G+ K L + Sbjct: 233 -RELFTQDLRQRRREERATGYTTYGIHKDDLEM-LLGENLMRKIGSEGQNKTFLTALKFT 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360 L++N PILLLD++ LD ++ + IV+ I QIF+T T++ D + E Sbjct: 291 EYNLLANKLQCRPILLLDDLFDKLDAERVERIIGIVSRPIFGQIFITDTNRKYLDDIIE 349 >gi|227877544|ref|ZP_03995604.1| recombination protein F [Lactobacillus crispatus JV-V01] gi|256843828|ref|ZP_05549315.1| recombination protein F [Lactobacillus crispatus 125-2-CHN] gi|256849617|ref|ZP_05555049.1| recombination protein F [Lactobacillus crispatus MV-1A-US] gi|293380894|ref|ZP_06626930.1| DNA replication and repair protein RecF [Lactobacillus crispatus 214-1] gi|227862843|gb|EEJ70302.1| recombination protein F [Lactobacillus crispatus JV-V01] gi|256613733|gb|EEU18935.1| recombination protein F [Lactobacillus crispatus 125-2-CHN] gi|256713733|gb|EEU28722.1| recombination protein F [Lactobacillus crispatus MV-1A-US] gi|290922567|gb|EFD99533.1| DNA replication and repair protein RecF [Lactobacillus crispatus 214-1] Length = 375 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 87/354 (24%), Positives = 154/354 (43%), Gaps = 28/354 (7%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRN L + FD+ IF+G N GKTN+LEAI FL+ R R + D+ G Sbjct: 8 VQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDLIGFGG-E 66 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVVDELNKHLRISWLVPSMD 130 F + V + D+ + L T+ + V ++ + + V +LN L P Sbjct: 67 FTNLLGHVHKSQVDLDLRV-LITQKGKKVWINRVEQAKLSKYVGQLNAIL----FSPEDL 121 Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSI 186 + G RRRF+D+ I+ + + +++ +N L + D + + Sbjct: 122 ELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQVFLDVL 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK-- 244 Q+A + ++ R + + LS + + + HI L + L + S ++ Sbjct: 182 SDQLAGIAAEVVFRRFKFLKYLS-----HYASDAYAHISLG-SEQLSIAYHPSVADIQAD 235 Query: 245 ---EEYAKKLFDGRKMDSMSR----RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 EE +K+ + S T GPHR D+ D + S G+Q+ + + Sbjct: 236 DSTEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFK-LDGQNAHLYASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347 >gi|327482927|gb|AEA77334.1| DNA recombination and repair protein RecF [Vibrio cholerae LMA3894-4] Length = 357 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 83/364 (22%), Positives = 166/364 (45%), Gaps = 20/364 (5%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 2 IQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNECSE 61 Query: 72 FFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 F R+ +D + + + + D S ++I + + +L + L + + P Sbjct: 62 LF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIHPE 119 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSI 186 + + +RR F+D VF +P F+RL + RN LL + Y + S+ Sbjct: 120 GFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW--- 176 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A L +I+ R +N L + + E + + P + L + + DQ + ++ E+ Sbjct: 177 DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSILEK 235 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 ++ D T GP+++DL + + S G+ ++ + +A + Sbjct: 236 NFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLFKMVCALRVAQGQH 287 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K Sbjct: 288 LTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSKTF 347 Query: 366 RISN 369 +++ Sbjct: 348 HVAH 351 >gi|239503907|ref|ZP_04663217.1| recombination protein F [Acinetobacter baumannii AB900] gi|323516068|gb|ADX90449.1| recombination protein F [Acinetobacter baumannii TCDC-AB0715] Length = 360 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 157/360 (43%), Gaps = 49/360 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66 LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR +Y Sbjct: 6 LNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYEA 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F + GM+ LA + +++N + +L K L + + Sbjct: 66 DDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P I + RR+ LD ++F ++P + R ++ RN LL T + Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174 Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 ++ G ++ R+ ++ N LS L+ P +++ L ++ Sbjct: 175 WNKMLSNYGEILHSQRLSIVEQWNVYFQNDLSQLL---------PDLEIEL------EYS 219 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQK 293 F ++ + L + + D R T GPHR+DL + + D + S G++K Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-----SRGQKK 273 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 ++++ + L+ ++ + + ++LLD+++A LD + L ++ +GSQ+FMT D + Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332 >gi|78045559|ref|YP_361734.1| recombination protein F [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|97181094|sp|Q3BZS9|RECF_XANC5 RecName: Full=DNA replication and repair protein recF gi|78033989|emb|CAJ21634.1| DNA replication and repair protein RecF [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 368 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 84/345 (24%), Positives = 145/345 (42%), Gaps = 14/345 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + + G+ Sbjct: 6 LSIHRLRRFHTVELHPSSTLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65 Query: 70 PSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F + G G L R L DV + L L + P Sbjct: 66 NDLEVFVEWKEGNGAAGERTRRAGLRHRGQEWTGRLDGEDVA--QLGALCAALAVVTFEP 123 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 + SG RRRFLD +F ++P + R ++ RN LL +G + + Sbjct: 124 GSHVLISGGGEPRRRFLDWGLFHVEPDFLTMWRRYARALKQRNALLKQGA-QPRMLDAWD 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 ++AE G + R + L ++ V P + LS F G + + +L Sbjct: 183 HELAESGESLTSRRTRYLERLQERLVP-VADAIAPALGLSALTFAPG-WKRHEVSL---- 236 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARL 306 A L R+ D + T GPHR+D + + +A+ S G+ K+ + LA A Sbjct: 237 ADALLLARERDRQNGYTSQGPHRADWVPSF--QALPGRDALSRGQAKLTALACLLAQAED 294 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + G P++ LD++ + LD + + + + +Q+ +T T+ Sbjct: 295 FAYERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATE 339 >gi|134096624|ref|YP_001102285.1| recombination protein F [Saccharopolyspora erythraea NRRL 2338] gi|291005722|ref|ZP_06563695.1| recombination protein F [Saccharopolyspora erythraea NRRL 2338] gi|166221860|sp|A4F5N5|RECF_SACEN RecName: Full=DNA replication and repair protein recF gi|133909247|emb|CAL99359.1| DNA replication and repair protein [Saccharopolyspora erythraea NRRL 2338] Length = 391 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 88/375 (23%), Positives = 165/375 (44%), Gaps = 46/375 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +++FR++ L F+ T+ VG NG GKTN++EA+ +++ R A+ A + R Sbjct: 3 VRHLQVTDFRSWPHADLTFEPGPTVLVGSNGQGKTNLVEALGYVATLGSHRVATDAPLVR 62 Query: 67 IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ A V G E + ++LE ++ R +IN ++ LR Sbjct: 63 YGTQRAVVRAAVVNHGRE----LLVELEITPGKANRA-RINRGAAGKPRDVLGILRTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + G ERRRFLD ++ A PR+ D++R++R R+ LL S Sbjct: 118 APEDMAMVRGDPGERRRFLDDLLVARAPRYAGVRSDYDRVLRQRSALLKSAGAAKRGGSG 177 Query: 186 --------IEAQMAELGVKINIARVEMINALSSLI------MEYVQKENFPHIKLSLTGF 231 + +A G ++ R++++ A++ + + +E P +++ Sbjct: 178 GDLRTLEVWDGHLARYGAELLAGRLDLVAAIAPHVTSAYANVAATAEETAPSGRVA---- 233 Query: 232 LDGKFDQSFC-ALKEEYAKKLFDGRKMDSMSRR-----------------TLIGPHRSDL 273 D ++ S +L E Y + ++ + + +L+GPHR DL Sbjct: 234 -DVRYRSSLGESLPEGYGVPRGEPADVEVLEKALLAELERVRAQELERGVSLVGPHRDDL 292 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 + + + S GE + + LA L++ G P+L+LD++ A LD +R+ Sbjct: 293 EL-MLGELPAKGYASHGESWSFALALRLASYHLLAE-DGAEPVLILDDVFAELDRRRRSR 350 Query: 334 LFRIVTDIGSQIFMT 348 L +V Q+ +T Sbjct: 351 LAELVAG-AEQVLVT 364 >gi|71899733|ref|ZP_00681885.1| RecF protein [Xylella fastidiosa Ann-1] gi|71730528|gb|EAO32607.1| RecF protein [Xylella fastidiosa Ann-1] Length = 364 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 83/335 (24%), Positives = 154/335 (45%), Gaps = 31/335 (9%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI- 88 F+G+NG GKT++LEA+ + GR FR + R GS E +E D Sbjct: 26 NFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGLIRHGS----------ENLEIFVDWQ 75 Query: 89 -SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR--------ISWLVPSMDRIFSGLSME 139 + + R R+ + + R+ + HL I++ S I S + Sbjct: 76 ETALINARRRRAGLSHYGQEWIGRLDGQKIMHLASLCAALAVITFESSSYQLINSNAEL- 134 Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199 RRRFLD +F ++P + +++ RN LL + + + + +++E+G ++ Sbjct: 135 RRRFLDWGLFHVEPDFLDLWRRYTHVLKQRNSLLKQKE-KLAMLEAWDQKLSEVGEQLTF 193 Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 R + + L ++ + + P++K+ GF F+ + + LF R+ D Sbjct: 194 RRFQYLERLKQRVIPLISRIT-PNLKIH--GF---NFNHGWRRHELPLIDALFISRERDY 247 Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILL 318 T +GPHRSD + +I H S G+ K++ + LA A+ + G PIL Sbjct: 248 QYGYTSLGPHRSDWTPQFS--SIPGVHFLSRGQGKLITLMCLLAQAQDFFDQRGEWPILA 305 Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 LD++++ LD+ + + ++ +I +Q+ +TGT+ S Sbjct: 306 LDDLASELDQKHQWRVLEMLAEIPAQVLITGTEIS 340 >gi|269791622|ref|YP_003316526.1| DNA replication and repair protein RecF [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099257|gb|ACZ18244.1| DNA replication and repair protein RecF [Thermanaerovibrio acidaminovorans DSM 6589] Length = 354 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 147/354 (41%), Gaps = 30/354 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + +RN + +F G NG GKTN+LEA S GF R S Sbjct: 1 MHFRSIKLYRYRNLEDQAVNLSPGLNLFFGPNGAGKTNLLEAFCAASGWGGFGRPSMIPR 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GSPS S A V G +I+ + + R + L+I+ + EL + + + Sbjct: 61 RGDGSPSPMS--AAVAQASGEEEITCAFQF-NRRPL--LKIDGSAV-TGSELRRRMPVLA 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + G RRR LD + P + + + R +R R L G W Sbjct: 115 FLPDSAALVDGPPSMRRRLLDMVCVLCVPGYGEALTRYRRAVRQRMASLRCG----RWEE 170 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-------FLDGKFD 237 MA V+I AR + L L + + H++ S G G+F Sbjct: 171 MTLRVMAREAVEIWRARSVVAPRLCQLSQAFASRLGI-HLEASYVGQHESLDRLEPGRFL 229 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++ ++K E + RR GPHR D+++ A +A S G+++ Sbjct: 230 EAARSIKGE-----------EMTHRRPRFGPHRDDVVLTSGGHAAGLAL-SRGQRRRAFA 277 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + +A A+++ P+L++DE+ A +D + R + R + ++G Q+ + D Sbjct: 278 ALVMASAQVVYKALRRGPVLVMDEVFAEVDREGRTLMARGLVELGVQVLASTAD 331 >gi|332163519|ref|YP_004300096.1| recombination protein F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667749|gb|ADZ44393.1| recombination protein F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861743|emb|CBX71917.1| DNA replication and repair protein recF [Yersinia enterocolitica W22703] Length = 361 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 155/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L + VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E + + + + D VR I+ V EL + L + + P Sbjct: 66 AEFV-LHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|161505633|ref|YP_001572745.1| recombination protein F [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189039638|sp|A9MJU2|RECF_SALAR RecName: Full=DNA replication and repair protein recF gi|160866980|gb|ABX23603.1| hypothetical protein SARI_03809 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 357 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D + T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERSFERDRILTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D ++ +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSKMF 348 Query: 366 RI 367 + Sbjct: 349 SV 350 >gi|325677517|ref|ZP_08157181.1| recombination protein F [Rhodococcus equi ATCC 33707] gi|325551764|gb|EGD21462.1| recombination protein F [Rhodococcus equi ATCC 33707] Length = 408 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 163/353 (46%), Gaps = 35/353 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++ +FR++ ++ + + T+FVG NG GKTN+LEA+ +LS R +S A + R Sbjct: 3 VRKFSLRDFRSWDAVTVDLEPGCTVFVGRNGHGKTNLLEALGYLSTLSSHRVSSDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+P ++ G E + I +E D ++ R +IN R E+ L+ Sbjct: 63 AGAPQAYAGALIANHGRE----LGIDIEINDGKANRA-RINQSPARRPREIVGILQTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYF 178 P + G +RRRFLD ++ A PR D+++++R R+ LL G Sbjct: 118 APEDLSLVRGDPGDRRRFLDELLTARRPRMAGVRADYDKVLRQRSALLKTAGGALRRGAR 177 Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSS-LIMEY--VQKENFP---HIKL 226 S S++ + +A G ++ +R+ +++ L+ L+ Y + E+ P K Sbjct: 178 SSDGASALATLDIWDGHLAAHGAQLLASRLRLVHDLAPHLVASYRSLAPESRPASVRYKS 237 Query: 227 SL-----TGFLDGKFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 SL T LD + L+ + +L + R+ + L+GPHR DL + Sbjct: 238 SLGTSLPTELLDPTREPEPDDVELLEVSFLNELSEMRQREIERGVCLVGPHRDDLELILG 297 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 D+ S GE + + L L+ + G P+L+LD++ A LD +R Sbjct: 298 DQPAK-GFASHGESWSFALSMRLGAFFLLRDD-GSDPVLMLDDVFAELDRKRR 348 >gi|187918304|ref|YP_001883867.1| DNA replication and repair protein RecF [Borrelia hermsii DAH] gi|119861152|gb|AAX16947.1| DNA replication and repair protein RecF [Borrelia hermsii DAH] Length = 355 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 91/352 (25%), Positives = 157/352 (44%), Gaps = 27/352 (7%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI+F N F+N + + FD + F G+NG GKTNIL+AI L+ F + ++ Sbjct: 4 KIEFFN---FKNIKNQVINFDFNNIYFYGENGSGKTNILDAIYCLAFASSFLVNTDRELI 60 Query: 66 RIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F+ F + D I L R+ + + +++N+ +I+ D + L I Sbjct: 61 TYGKTEFYLKCFYKTRE----KDAEISLSFRNGK--KEIKVNNSLIK--DRKDLILNIPA 112 Query: 125 LVPS-MDRIFS-GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 +V S D F G ++R F D+ + + + + + R+++ RN +L +G + Sbjct: 113 IVFSNYDTDFIIGEPAKKRWFFDQAISLVSLSYLDSLRKYRRILKQRNLILKQG--NRDL 170 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS--F 240 + ++I R I Y + ++ L+ K+ S + Sbjct: 171 LKVYNEAFVDYALEIIRMRENFIKHFYEFFKYYYS------LIFDVSYNLEIKYLPSVAY 224 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 C ++E+ LF K + ++ TLIGPHR DL + + H STGE + + + Sbjct: 225 CG-RDEFLHLLFLKEKDEFLNESTLIGPHR-DLYEILSGERVFTHHSSTGETRALALIYR 282 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L + + G APILL D++ LD +R +F I+ SQ F T D+ Sbjct: 283 LVQVIIFNKRFGIAPILLFDDVFLELDSTRRKRVFDILPK-DSQCFFTFVDE 333 >gi|260101875|ref|ZP_05752112.1| recombination protein F [Lactobacillus helveticus DSM 20075] gi|260084303|gb|EEW68423.1| recombination protein F [Lactobacillus helveticus DSM 20075] gi|328468763|gb|EGF39734.1| recombination protein F [Lactobacillus helveticus MTCC 5463] Length = 375 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 24/352 (6%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRN L + FD IF+G N GKTN+LEAI FL+ R R S D IG Sbjct: 8 VQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNS--DKELIG--- 62 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F + + G + + + L + + + IN V + + L P Sbjct: 63 FGGEYTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAILFSPEDLE 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + G RRRF+D+ I+ + + +++ +N L + D + + Sbjct: 123 LIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQVFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-----KLSLTGFLDGKFDQSFCA 242 Q+A + ++ R + + LS + + HI KL++ ++ Sbjct: 183 DQLAGIAAEVIFRRFKFLRYLS-----HYASNAYAHISLGGEKLAIAYHPSVSTIEADDT 237 Query: 243 LKEEYAKKL--FDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E Y K L F+ K M + T GPHR D+ K + + S G+Q+ + + + Sbjct: 238 VEEIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIALSV 296 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 297 KLAEIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYIHG-KTQTFITTTD 347 >gi|253582582|ref|ZP_04859803.1| DNA replication and repair protein recF [Fusobacterium varium ATCC 27725] gi|251835452|gb|EES63992.1| DNA replication and repair protein recF [Fusobacterium varium ATCC 27725] Length = 375 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/369 (21%), Positives = 160/369 (43%), Gaps = 42/369 (11%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 +N FRN + F + +F G NG GKT++LEA+ F S G+ FR +++ + G Sbjct: 6 INYVNFRNLQDGNVKFFPKMNLFYGKNGQGKTSLLEALYFNSTGKSFRTTKSSEMMKYGY 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + + G +++K D + N ++ DE L + +P Sbjct: 66 KR-TGVYVVYKDNIGEKTLTVKFNNEDKKE---YSYNGKRVQ-YDEFYGKLNVVTYIPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR F D + + + + +F ++++ RN+ L E + + + Sbjct: 121 IVLITGSPSVRRNFFDGEIAQTSSEYFQELKNFNKILKIRNKYLKEKKHKEPEFTIYQDE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + G K+ R+E + +S ++ N + KL F D K L +Y Sbjct: 181 FIKYGAKVIEKRMEYVKKISIIL-------NLNYRKL----FDDKK------ELSIQYQC 223 Query: 250 KLFDGRKM------DSMSRRT-------------LIGPHRSDLIVDYCDKAITIAHGSTG 290 L + +KM D++ +RT L GP + D + + + + S G Sbjct: 224 HLGNIKKMSLREIEDALRKRTEEKLGQELRYGFSLSGPQKDDFLF-FLNSYEAKSTASQG 282 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 E+K ++ + L+ ++ +PIL++D+IS++ D ++++++ + Q+F++ T Sbjct: 283 EKKSIIFSLKLSEIDMVLREKKESPILIIDDISSYFDSNRKDSILNYLEKRNIQVFISST 342 Query: 351 DKSVFDSLN 359 + +S N Sbjct: 343 GELGINSEN 351 >gi|308175817|ref|YP_003915223.1| DNA replication and repair protein RecF [Arthrobacter arilaitensis Re117] gi|307743280|emb|CBT74252.1| DNA replication and repair protein RecF [Arthrobacter arilaitensis Re117] Length = 387 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 100/394 (25%), Positives = 173/394 (43%), Gaps = 38/394 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L+++ FR+YA + + +G NGVGKTNI+E+I +L+ R ++ A + Sbjct: 3 ISQLSLTGFRSYAQADVHLAPGINVLIGPNGVGKTNIVESIGYLANLSSHRVSNDAPLL- 61 Query: 67 IGSPSFFSTFARVEGM--EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +F S A + G G ++++E + R +IN E+ +R Sbjct: 62 ----NFESDRALIRGTVHRGPQTTTLEVEITSGKINRA-RINRANPVRAREILGMVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RR+FLD ++ A+ P D++R+++ RN LL S + Sbjct: 117 FAPEDLALIKGDPSNRRKFLDELLVALRPIESGTKNDYDRIVKQRNALLKSIRGKSKLST 176 Query: 185 SIEAQMAELGVKINIARVEMINA---LSSLIMEYVQ----------KENFPHIKLSLTGF 231 S E + +++ + +I + +LI Y+Q K+ + SL G Sbjct: 177 SQENTLKAWDLQLTMTGARLIRGRLDVLALIRPYMQAAYADLADGAKDARAVYRSSLEGE 236 Query: 232 LDGKF--DQSFCALKEEYAKKLFDGRKMDSMSRR-----TLIGPHRSDLIVDYCDKAITI 284 LD + +L++E ++L + SR +L GPHR DL + A Sbjct: 237 LDENSLPAEDLESLEQEEIQELLLTAIEANRSREVDRGISLFGPHRDDLTL-ILGPAPAK 295 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNT---TGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + LA R+ + G PIL+LD++ A LD +R+ L IV Sbjct: 296 GYASHGETWSFALALRLAAYRVFGDDDPRPGSGPILILDDVFAELDTTRRDRLAHIVAG- 354 Query: 342 GSQIFMTGTDKSVFDSLNETAK--FMRISNHQAL 373 Q+ +T +V + + E K F ++S Q + Sbjct: 355 AEQVLVTA---AVVEDVPEALKGHFFQVSPGQVV 385 >gi|295133310|ref|YP_003583986.1| DNA replication and repair protein RecF [Zunongwangia profunda SM-A87] gi|294981325|gb|ADF51790.1| DNA replication and repair protein RecF [Zunongwangia profunda SM-A87] Length = 359 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 36/377 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVT 65 +K L++ ++N S FD + VG NGVGKTN+L++I L+ G+ F + ++ Sbjct: 3 LKHLSLLNYKNLESSSFDFDPKINCMVGHNGVGKTNVLDSIYHLAFGKSYFNPITSQNIN 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI--S 123 FF E + I + + + ++ Q + +++++H+ + Sbjct: 63 H--EADFFVVDGTFEKNDKEEQILVSAKRGQKKVIKRNQ------KPYEKVSEHIGFIPA 114 Query: 124 WLVPSMDR--IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGY 177 ++ DR I G S RR+F+D ++ D + +I++ +++ RN LL Sbjct: 115 VIISPADRDLIIEG-SETRRKFMDGVISQSDSGYLNDLINYSKIVSQRNSLLKYFAANHT 173 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQ-KENFPHIKLSLTGFLDGK 235 FD Q+ +LG K+ RV+ + + + Y + N + + L K Sbjct: 174 FDRDTLEVYNLQLNDLGTKLYKKRVDFLQEFVPIFNKRYAEITNNKEPVSIEYKSQLSHK 233 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 +K L D + D + + T +G H+ DL + I GS G+QK Sbjct: 234 ----------TLSKLLEDQLQKDMVLQYTSVGTHKDDLSFEIEGHPIK-KFGSQGQQKSF 282 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTD--- 351 LV + LA I +G PILLLD++ LDE + + +V T+ QIF++ T Sbjct: 283 LVALKLAQFDFIKKISGVNPILLLDDVFDKLDEQRVAHIVALVATNELGQIFISDTHAER 342 Query: 352 -KSVFDSLNETAKFMRI 367 + V N+T K ++ Sbjct: 343 TEKVVKESNQTYKIFKL 359 >gi|194363781|ref|YP_002026391.1| recombination protein F [Stenotrophomonas maltophilia R551-3] gi|226737839|sp|B4SR07|RECF_STRM5 RecName: Full=DNA replication and repair protein recF gi|194346585|gb|ACF49708.1| DNA replication and repair protein RecF [Stenotrophomonas maltophilia R551-3] Length = 364 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 85/361 (23%), Positives = 150/361 (41%), Gaps = 9/361 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ L + + R + ++ L + GDNG GKT+ILEA+ ++ GR FR + Sbjct: 1 MQIRRLALHQLRRFNAVELSPQPGLNLLTGDNGAGKTSILEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + E K R +++ + + L L + Sbjct: 61 VRQGQEALEIFVEWDEQRASHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G S Sbjct: 121 FEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQG-GPSRMLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R + L + + E P + G + + + Sbjct: 180 TWDHELAEAGEPLTSRRQHYLERLQQRTVA-LAAELAPQL-----GIQAMELSPGWRRHE 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T +GPHR+D VD+ + A S G+ K+ + LA A Sbjct: 234 LPLADALLLARERDRQAGYTSVGPHRADWSVDFHNIPGRDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 + G P++ LD++++ LD + + + +QIF+T T+ + L A+ Sbjct: 293 EDYAEQRGEWPVIALDDLASELDRTHQARVLERLLGGPAQIFVTATETPAALQELTHIAR 352 Query: 364 F 364 F Sbjct: 353 F 353 >gi|315107495|gb|EFT79471.1| recombination protein F [Propionibacterium acnes HL030PA1] Length = 401 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 92/370 (24%), Positives = 168/370 (45%), Gaps = 28/370 (7%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVEHLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175 P+ + G +RR FLD +V PR D+ER+++ RN LL + Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G + + ++A +G ++ AR++ ++A+ L +E P L+ + Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTI 244 Query: 232 -LDGKF------DQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDK 280 L+G + + S ++E A + D R+ D + R TL+GP R D+I+ + + Sbjct: 245 DLEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362 Query: 341 IGSQIFMTGT 350 Q+ +T Sbjct: 363 -ADQVLVTAA 371 >gi|152963976|ref|YP_001359760.1| DNA replication and repair protein RecF [Kineococcus radiotolerans SRS30216] gi|189039627|sp|A6W3V7|RECF_KINRD RecName: Full=DNA replication and repair protein recF gi|151358493|gb|ABS01496.1| DNA replication and repair protein RecF [Kineococcus radiotolerans SRS30216] Length = 391 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 162/370 (43%), Gaps = 35/370 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ ++R+Y +L L T FVG NG GKTN++EAI +++ R + A + Sbjct: 1 MHVAHLSLVDYRSYPTLELDLRPGTTTFVGLNGQGKTNLVEAIGYVATLGSHRVSGDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ R + G ++LE ++ R ++N +R ++ LR Sbjct: 61 VRQGA---ERAVVRAQLERGGRRALVELEITPGKANRA-RLNGNPVRRTRDVLGVLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177 P + G ERRR+LD ++ PR D++R++R R LL G Sbjct: 117 FAPEDLALVKGDPGERRRYLDELLVTRWPRIAGVRADYDRILRQRTALLKSAGSAMRSGR 176 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI-------------MEYVQKENFPHI 224 D+ + +A G ++ AR+ ++ L S +E + + P + Sbjct: 177 ADTHTLDVWDEHLATTGAELLSARLALLADLRSPTDSAYRAVSGGQGDLELGYRSSLPLL 236 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 + G+ + AL+E + + RK + L+GPHR DL++ Sbjct: 237 AEGVATTPGGEA-PTRDALREALLASMLEQRKSELDRGVCLVGPHRDDLVLTLGGMPAK- 294 Query: 285 AHGSTGEQKVVLVGIFLAHARL------ISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 + S GE V +G+ LA RL + + G P+L+LD++ A LD +R L +V Sbjct: 295 GYASHGESWSVALGLRLASYRLLLADDEVDDPGG--PVLVLDDVFAELDAGRRERLSEVV 352 Query: 339 TDIGSQIFMT 348 D Q+ +T Sbjct: 353 ADA-EQVLVT 361 >gi|50083300|ref|YP_044810.1| recombination protein F [Acinetobacter sp. ADP1] gi|81827570|sp|Q6FG19|RECF_ACIAD RecName: Full=DNA replication and repair protein recF gi|49529276|emb|CAG66988.1| DNA replication, recombinaison and repair protein [Acinetobacter sp. ADP1] Length = 358 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 85/358 (23%), Positives = 156/358 (43%), Gaps = 39/358 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASY 61 ++I LNI RN ++ L IF G NG GKT+ILEA+ L+ GR FR Y Sbjct: 1 MQITRLNIERVRNLKAVALSGLQPFNIFYGANGSGKTSILEAVHLLATGRSFRTHMPKHY 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + F + + GM+ L + +++N + +L K L Sbjct: 61 IQQNAQDAIIFAQSLSEKIGMQKLLS-----------GEQLIKVNGDTVATQGQLAKLLP 109 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDS 180 + L P I + RR+ LD ++F ++P + R ++ RN LL T+ Sbjct: 110 LQHLDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNMLLKTKRQLSL 169 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFD 237 + ++E G ++ R+ + + + + P +++ L GF Sbjct: 170 AELEPWNKMLSEYGEMLHSQRLVTVERWKDFFQQDL-AQLLPDLQIELEYSPGF------ 222 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL----IVDYCDKAITIAHGSTGEQK 293 S L ++ L + D R T GPHR+DL + D + S G++K Sbjct: 223 HSEVGLWQD----LLNYHNKDVERRYTEYGPHRADLRLKTALGDADDVL-----SRGQKK 273 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 ++++ + L+ ++ + + ++LLD+++A LD + + L ++ +GSQ+F+T D Sbjct: 274 LLMMALKLSQIAML-HASNKETVVLLDDLTAELDSNAQRRLIERLSQLGSQVFITTLD 330 >gi|238797843|ref|ZP_04641335.1| DNA replication and repair protein recF [Yersinia mollaretii ATCC 43969] gi|238718259|gb|EEQ10083.1| DNA replication and repair protein recF [Yersinia mollaretii ATCC 43969] Length = 361 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L + VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E + + + + D VR I+ V EL + L + + P Sbjct: 66 AEFV-LHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRPWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T IGPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTAIGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|251791866|ref|YP_003006586.1| recombination protein F [Aggregatibacter aphrophilus NJ8700] gi|247533253|gb|ACS96499.1| DNA replication and repair protein RecF [Aggregatibacter aphrophilus NJ8700] Length = 358 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 86/359 (23%), Positives = 160/359 (44%), Gaps = 23/359 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN ++ L +D VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLTVENFRNLQAVDLEWDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDQPH-FTLFGQIQEQQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F RL++ RN L + SS+ Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVSFYNLWASLSRLLKQRNAALQQ---VSSYQQ 173 Query: 185 S--IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + ++ +L ++++ R E AL I E + P + +S++ + DQ+ Sbjct: 174 MKIWDVELVKLAEQVSLLRAEYAQALQPEI-EQTCRLFLPELDISVSFHQGWEKDQN--- 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301 YA+ L + D T+ GP ++D + + + S G+ K+++ + L Sbjct: 230 ----YAELLARNFERDRTLGYTVSGPQKADF--RFKANGLPVEDILSRGQLKLLMCALRL 283 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 A + I L+D+ ++ LD+ KR+ L + + GSQ+F+T + + LNE Sbjct: 284 AQGEHLMQQKQRHCIFLIDDFASELDQTKRSLLAERLQNSGSQVFVTAITQ---NQLNE 339 >gi|318608023|emb|CBY29521.1| DNA recombination and repair protein RecF [Yersinia enterocolitica subsp. palearctica Y11] Length = 361 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 155/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L + VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E + + + + D VR I+ V EL + L + + P Sbjct: 66 AEFV-LHGRVDANERESSVGLSKSRQGDTRVR---IDGTDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|238897210|ref|YP_002921958.1| recombination protein F [Klebsiella pneumoniae NTUH-K2044] gi|238549540|dbj|BAH65891.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 357 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 90/361 (24%), Positives = 156/361 (43%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEHADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 DAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F + + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLRPWDLE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E A+ + + Q + P L+ + F G ++ +YA+ Sbjct: 181 LIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFS-FQRGWEKET------DYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D ++ +K R+ Sbjct: 292 VSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSKMFRVE 351 Query: 369 N 369 Sbjct: 352 K 352 >gi|218245953|ref|YP_002371324.1| recombination protein F [Cyanothece sp. PCC 8801] gi|257059001|ref|YP_003136889.1| recombination protein F [Cyanothece sp. PCC 8802] gi|226737787|sp|B7K127|RECF_CYAP8 RecName: Full=DNA replication and repair protein recF gi|218166431|gb|ACK65168.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 8801] gi|256589167|gb|ACV00054.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 8802] Length = 380 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 103/384 (26%), Positives = 183/384 (47%), Gaps = 58/384 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++S FRNY ++ FD Q TI +G+N GK+N+LEA+ L+ + R D Sbjct: 3 LKTLHLSAFRNYREQQIEFDHQKTILLGNNAQGKSNVLEAVELLATLKSHRTNRDRDFIL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + A++E G +D++I L + R+ L +N + L +HL + Sbjct: 63 EGE-TIGQITAKIERNYGTSDLAITLRSPGRRT---LTLNH------EHLRRHLE---FL 109 Query: 127 PSMDRI-FSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174 S++ + FS L ++ RR +LD ++ ++P + + + +++R RN LL Sbjct: 110 GSLNAVQFSSLDLDLVRGSPDARRNWLDTLLVQLEPIYAHILQQYYQVLRQRNALLKDLR 169 Query: 175 -----EGYFD--SSWCSSI---EAQMAELGVKINIARVEMINALSSLI----------ME 214 EG D S+ + + + Q+AE G ++ R +I L L E Sbjct: 170 KTATEEGKSDHLSAQMTQLHLWDQQLAETGSRVTRRRARVIERLIPLAQIWHQNISGGQE 229 Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274 +Q + P++ L+ Q+F A K+ R + T++GPHR D Sbjct: 230 ILQIDYLPNVSWQEDEPLE--VQQAFLA-------KIEQRRLAEQQLGTTVVGPHRDD-- 278 Query: 275 VDYC-DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 V++ + ++GS G+Q+ +++ + LA +LI G P+LLLD++ A LD +++N Sbjct: 279 VEFTINGTPAKSYGSQGQQRTLVLALKLAELKLIEEVIGEPPLLLLDDVLAELDPNRQNQ 338 Query: 334 LFRIVTDIGSQIFMTGTDKSVFDS 357 L ++ Q F+T T FD+ Sbjct: 339 LLEVIQG-RFQTFITTTYLHSFDA 361 >gi|260774539|ref|ZP_05883452.1| DNA recombination and repair protein RecF [Vibrio metschnikovii CIP 69.14] gi|260610445|gb|EEX35651.1| DNA recombination and repair protein RecF [Vibrio metschnikovii CIP 69.14] Length = 359 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 86/365 (23%), Positives = 161/365 (44%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN + + + +G NG GKT++LEAI L GR F+ + V + Sbjct: 6 LVVQQFRNIKACDMTLSSGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 SELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + +RR F+D VF P F+RL + RN LL + Y + S+ Sbjct: 121 EGFELLTDGPKQRRAFIDWGVFHSQPAFFDAWGRFKRLNKQRNALLKTAKSYREISYWDQ 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 AQ+AE +I+ R + + + E + + P +SLT + G Q+ Sbjct: 181 ELAQLAE---QIDQWRQIYVEHMKK-VAEALCQSFLPEFSISLT-YYRGWDKQT------ 229 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 Y + L + D + T GP+++DL + + S G+ K+++ + +A + Sbjct: 230 PYKEILQNNFARDQLLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D + +K Sbjct: 289 HLTELTGKQCIYLIDDFASELDSQRRQRLADCLKATGAQVFVSSITESQVTDMIEPNSKM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|229843949|ref|ZP_04464090.1| recombination protein F [Haemophilus influenzae 6P18H1] gi|229812943|gb|EEP48631.1| recombination protein F [Haemophilus influenzae 6P18H1] Length = 359 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 162/367 (44%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ F Q + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|229846049|ref|ZP_04466161.1| recombination protein F [Haemophilus influenzae 7P49H1] gi|229811053|gb|EEP46770.1| recombination protein F [Haemophilus influenzae 7P49H1] Length = 359 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 162/367 (44%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + I ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGKIQESQHQWSIGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I E + P ++++++ F Q + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEI-EQTCRLFLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|312882233|ref|ZP_07741979.1| recombination protein F [Vibrio caribbenthicus ATCC BAA-2122] gi|309370077|gb|EFP97583.1| recombination protein F [Vibrio caribbenthicus ATCC BAA-2122] Length = 360 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 87/365 (23%), Positives = 160/365 (43%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + V + G Sbjct: 6 LIIQQFRNIKACDIELSAGFNFLIGVNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNGC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSS 185 + + RR F+D VF + F+RL + RN LL Y + S+ + Sbjct: 121 EGFDLLTEGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTARHYHELSYWDN 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 A +AE + A VE + + I P + L+ + + + + + Sbjct: 181 EMAVLAENISQWREAYVEQMKKKAQQICGAF----LPEFDIQLSYYRGWEKETPY----Q 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E K F+ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 233 EILKNNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 +++ TG I L+D+ ++ LD +R L + + G+Q+F++ TD+ + D +E K Sbjct: 289 HLTDVTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDQQIADMRDENGKM 348 Query: 365 MRISN 369 R+ + Sbjct: 349 FRVEH 353 >gi|71275532|ref|ZP_00651818.1| RecF protein [Xylella fastidiosa Dixon] gi|71900179|ref|ZP_00682319.1| RecF protein [Xylella fastidiosa Ann-1] gi|170729254|ref|YP_001774687.1| recombination protein F [Xylella fastidiosa M12] gi|226737850|sp|B0U1G7|RECF_XYLFM RecName: Full=DNA replication and repair protein recF gi|71163832|gb|EAO13548.1| RecF protein [Xylella fastidiosa Dixon] gi|71730068|gb|EAO32159.1| RecF protein [Xylella fastidiosa Ann-1] gi|167964047|gb|ACA11057.1| DNA replication and repair RecF protein [Xylella fastidiosa M12] Length = 364 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 82/333 (24%), Positives = 154/333 (46%), Gaps = 31/333 (9%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI- 88 F+G+NG GKT++LEA+ + GR FR + R GS E +E D Sbjct: 26 NFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGLIRHGS----------ENLEIFVDWQ 75 Query: 89 -SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR--------ISWLVPSMDRIFSGLSME 139 + + R R+ + + R+ + HL I++ S I S + Sbjct: 76 ETALINARRHRAGLSHYGQEWIGRLDGQKIIHLASLCAALAVITFESSSYQLINSNAEL- 134 Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199 RRRFLD +F ++P + +++ RN LL + + + + + +++E+G ++ Sbjct: 135 RRRFLDWGLFHVEPDFLDLWRCYTHVLKQRNSLLKQKE-ELAMLEAWDQKLSEVGEQLTF 193 Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 R + + L ++ + + P++K+ GF F+ + + LF R+ D Sbjct: 194 RRFQYLERLKQRVIPLISRIT-PNLKIH--GF---NFNHGWRRHELPLIDALFISRERDY 247 Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILL 318 T +GPHRSD + +I H S G+ K++ + LA A+ + G PIL Sbjct: 248 QYGYTSLGPHRSDWTPQF--SSIPGVHVLSRGQGKLITLMCLLAQAQDFFDQRGEWPILS 305 Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LD++++ LD+ + + ++ +I +Q+ +TGT+ Sbjct: 306 LDDLASELDQKHQWRVLEMLAEIPAQVLITGTE 338 >gi|183597170|ref|ZP_02958663.1| hypothetical protein PROSTU_00413 [Providencia stuartii ATCC 25827] gi|188023484|gb|EDU61524.1| hypothetical protein PROSTU_00413 [Providencia stuartii ATCC 25827] Length = 364 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 156/366 (42%), Gaps = 22/366 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L +G NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIEDADLALANGFNFLIGPNGSGKTSVLEAIYTLGHGRAFRSIQANRVIRHEQ 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F ++ + + D VR I+ + EL K L + + P Sbjct: 66 AQFILHGKLGHLDASRKALSLGLSKNREGDSKVR---IDGTDGHKIAELAKLLPMQLITP 122 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCS 184 + +G RR F+D F +P D +RL++ RN L + ++ W Sbjct: 123 EGFTLLNGGPKYRRAFIDWGCFHNEPLFFSVWSDLKRLLKQRNAALRQVSRYEQIRHW-- 180 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A L +I+ R E I ++ I + Q + P LS++ F G +D+ Sbjct: 181 --DQQLAPLAEQISQWRSEYIAGIAENIEQTCQ-QFLPEFVLSVS-FQRG-WDKEI---- 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y++ L + D M T GPH++DL + + S G+ K+++ + LA Sbjct: 232 -DYSELLERQFERDKMLTYTASGPHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQG 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + +G + LLD+ ++ LD +R L + +Q+F++ T + V D ++ +K Sbjct: 290 EFFTQQSGQRCLYLLDDFASELDSGRRQLLAARLKATQAQVFVSAITPEQVKDMIDVNSK 349 Query: 364 FMRISN 369 + + Sbjct: 350 MFSVEH 355 >gi|262040464|ref|ZP_06013707.1| DNA replication and repair protein RecF [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042217|gb|EEW43245.1| DNA replication and repair protein RecF [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 357 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 90/361 (24%), Positives = 156/361 (43%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEHADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 66 DAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F + + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLRPWDLE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E A+ + + Q + P L+ + F G ++ +YA+ Sbjct: 181 LIPLAEQISRWRAEYSAAVVEDMADTCQ-QFLPEFTLTFS-FQRGWEKET------DYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D ++ +K R+ Sbjct: 292 VSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSKMFRVE 351 Query: 369 N 369 Sbjct: 352 K 352 >gi|317509429|ref|ZP_07967047.1| DNA replication and repair protein RecF [Segniliparus rugosus ATCC BAA-974] gi|316252258|gb|EFV11710.1| DNA replication and repair protein RecF [Segniliparus rugosus ATCC BAA-974] Length = 411 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 95/375 (25%), Positives = 155/375 (41%), Gaps = 35/375 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ I +FR++ L T+F+G NG GKTN++EA+ LS R A A + Sbjct: 1 MRVSSFEIRDFRSWEHASLRLGEGSTLFLGRNGYGKTNLVEALGVLSSLSSHRGAQTAAM 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + + EG + +++ L ++ + QIN V R E+ LR Sbjct: 61 VRRGAAEALIAADVLNEGRK----LTVGLRLAPGKATKA-QING-VNRPTREVAGVLRTV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182 + P + G ERRRFLD + PR DFER++R R LL G Sbjct: 115 FFSPEDLALVRGEPGERRRFLDETLVVRQPRMAGVKADFERVLRQRATLLKSLGGGRPGA 174 Query: 183 CSSIEA---------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 S EA Q A + +AR+ ++ ALS ++ + P + + + Sbjct: 175 ARSEEARATLEAWDEQFASKAAALTVARISLVRALSPIVKRCYAAID-PSVDDAELRYRT 233 Query: 234 GKFDQSFCALKEEYAK--------------KLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 D A E++ KL + R+ + + L GPHR DL + Sbjct: 234 AGEDDEATAAAEDFPSAEISERHVADSITAKLAEIREEELRRGQCLAGPHRDDLELRIAG 293 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + A S GE + + +A L+ G P+L+LD++ A LD +R + + Sbjct: 294 -GLARAFVSHGEAWSYALALRVAAFELLRG-EGHDPVLVLDDVFAELDGPRREVVAGLAR 351 Query: 340 DIGSQIFMTGTDKSV 354 Q +T D + Sbjct: 352 Q-AEQTLITAADPAT 365 >gi|16767121|ref|NP_462736.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992429|ref|ZP_02573527.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242055|ref|ZP_02666987.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194445873|ref|YP_002043086.1| recombination protein F [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450242|ref|YP_002047869.1| recombination protein F [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200387747|ref|ZP_03214359.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|20141706|sp|P24900|RECF_SALTY RecName: Full=DNA replication and repair protein recF gi|226737830|sp|B4TAU7|RECF_SALHS RecName: Full=DNA replication and repair protein recF gi|226737831|sp|B4SYA6|RECF_SALNS RecName: Full=DNA replication and repair protein recF gi|16422409|gb|AAL22695.1| gap repair protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194404536|gb|ACF64758.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408546|gb|ACF68765.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199604845|gb|EDZ03390.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205329422|gb|EDZ16186.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338680|gb|EDZ25444.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261248977|emb|CBG26834.1| recF protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996121|gb|ACY91006.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160369|emb|CBW19894.1| recF protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914966|dbj|BAJ38940.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225554|gb|EFX50609.1| DNA recombination and repair protein RecF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132197|gb|ADX19627.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990686|gb|AEF09669.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 357 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 158/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++ E I + + + D VR I+ + EL + + + P Sbjct: 66 EAFV-LHGRLQSEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|314987109|gb|EFT31201.1| recombination protein F [Propionibacterium acnes HL005PA2] gi|314990689|gb|EFT34780.1| recombination protein F [Propionibacterium acnes HL005PA3] Length = 401 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 92/370 (24%), Positives = 168/370 (45%), Gaps = 28/370 (7%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVCADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175 P+ + G +RR FLD +V PR D+ER+++ RN LL + Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G + + ++A +G ++ AR++ ++A+ L +E P L+ + Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTI 244 Query: 232 -LDGKF------DQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDK 280 L+G + + S ++E A + D R+ D + R TL+GP R D+I+ + + Sbjct: 245 DLEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362 Query: 341 IGSQIFMTGT 350 Q+ +T Sbjct: 363 -ADQVLVTAA 371 >gi|254430013|ref|ZP_05043720.1| RecF/RecN/SMC N terminal domain, putative [Alcanivorax sp. DG881] gi|196196182|gb|EDX91141.1| RecF/RecN/SMC N terminal domain, putative [Alcanivorax sp. DG881] Length = 369 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 98/351 (27%), Positives = 159/351 (45%), Gaps = 31/351 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-SPGRGFRRASYADVTRIG 68 L +S+FRNY S + + +GDNG GKT++LEAI F+ S GR FR + + R G Sbjct: 5 LQLSDFRNYGSAEVDLSPSLNVILGDNGSGKTSLLEAIYFIGSGGRSFRGGRLSRLVRDG 64 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + + + +A V E L + ++ R + ++++ + + E+ L + L P+ Sbjct: 65 AEA-ATLYAEVLAAEELHRLGVR---RTPGGIDAIKLDGQTPKALSEVAALLPVLALHPT 120 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 + G S RRRF+D +F ++ + ++ RN LL G Sbjct: 121 SVELVFGSSQLRRRFMDWGMFHVEHQFMPVWRAGSAALKQRNALLRTGRPSQRELGFWNQ 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 Q+A+ +I R + AL + E V P +K+ L Q+ E Y Sbjct: 181 QLAQTSDRIEGLRRSYLAALQRGLDE-VLVVLAPELKIRLR-------LQTGLQKDESYG 232 Query: 249 KKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHG-------STGEQKVVLVGIF 300 + L D + D + R + G HRSD+ ++ +HG S G+ K+V G+ Sbjct: 233 QAL-DRLQTDDLRRGFSQAGFHRSDIRIE--------SHGVVARDRLSRGQAKLVAYGMV 283 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LA LIS G LL+D+++A LDE+ RN L + G Q +T D Sbjct: 284 LAQLPLISQ-AGKVCTLLVDDLAAELDEEHRNQLLGYLATTGHQTLITALD 333 >gi|318079376|ref|ZP_07986708.1| recombination protein F [Streptomyces sp. SA3_actF] Length = 312 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 122/284 (42%), Gaps = 30/284 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F R +G ++LE R+ R +R D L +R Sbjct: 61 VRAGA---ERAFVRAAVTQGERSQLVELEINPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHI---KLSLT 229 D S + +A G ++ R ++I AL L+ E + P + + S Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLARRTDLIAALQPLVDKTYEQLAPGGGPALLEYRPSAP 236 Query: 230 GFLDGK---FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270 G G+ + Q AL E RK + TL+GPHR Sbjct: 237 GTAQGREEFYAQLLAALGEV--------RKQEIERGVTLVGPHR 272 >gi|292490173|ref|YP_003525612.1| DNA replication and repair protein RecF [Nitrosococcus halophilus Nc4] gi|291578768|gb|ADE13225.1| DNA replication and repair protein RecF [Nitrosococcus halophilus Nc4] Length = 362 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 86/354 (24%), Positives = 149/354 (42%), Gaps = 25/354 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+I FRN + IF G NG GKT++LEAI L GR FR + A V Sbjct: 1 MHIAHLDIRNFRNLEHIEFYPAKGLNIFTGANGSGKTSLLEAIYLLGLGRSFRSSQLASV 60 Query: 65 TRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ ARV + + + ++ + R+ +IN ++ +L L + Sbjct: 61 VR-GNMKSLRVVARVKQTTDAFQIVGVEFSSTGFRA----RINGNAVKRRSQLAAQLPLL 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 ++ I G RR++LD +F ++ R + R ++ RN L SW Sbjct: 116 YMSSYSHLILDGGPRYRRQWLDWGLFHLESNFRDLWWRYHRALKQRNHALRTQM--PSWR 173 Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 I+A ++A G ++ R +++ L + + + G + +F + + Sbjct: 174 REIDAWDRELATYGEQVTSFREAILSQLQESVSQLFA------VLAHQVGPVTMEFKRGW 227 Query: 241 C---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 AL E L D + T GPHR+++ K + S G+QKV Sbjct: 228 SRTIALGEVLKATL----DYDRAAGYTRYGPHRAEVAFYASGKDVRDIL-SRGQQKVFCY 282 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + L L+ I L+D+ ++ LD D R + ++ +G Q+F+T + Sbjct: 283 SLALGQVELLCKIKEQHCIFLIDDFTSELDADHRRRVLALLNQLGIQVFVTTVE 336 >gi|319949429|ref|ZP_08023490.1| recombination protein F [Dietzia cinnamea P4] gi|319436891|gb|EFV91950.1| recombination protein F [Dietzia cinnamea P4] Length = 410 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 160/364 (43%), Gaps = 29/364 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++ L L + T +G NG GKTN+LEAI L+ R R A A + Sbjct: 1 MHLRHLRLLDFRSWPLLELDLEPGVTTLIGRNGHGKTNVLEAIGVLASLRSHRVAGDAPM 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + A G E ++++L ++ R ++N R + ++ ++ Sbjct: 61 IRTGAGTALVGALAHNAGRE----LTVELALNSGKANRA-RLNTSPCRRLSDILGVVQSV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------G 176 P + G ERRR LD ++ P + ++ ++R R LL G Sbjct: 116 LFAPEDLALVRGEPAERRRLLDELMVQRRPSLGGDLAEYSSVLRQRTALLKSASGALRRG 175 Query: 177 YFDSSWC-----SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSL 228 + S + ++AELG ++ R++++ L L+++ + E+ P L+ Sbjct: 176 RPEESAAVLDTLDVWDGRLAELGARLVAGRIDLLRQLRPLVVDAYRGLAPESRP-AGLAY 234 Query: 229 TGFLDGKFDQSFCALKEEYAKKL---FDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITI 284 + D+S E L R+ D + R +L+GPHR DL++ D+ Sbjct: 235 RFRVADTPDESELTDPELVEAVLLAELGRRRRDEIDRGMSLVGPHRDDLLLTLGDEPAK- 293 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 S GE + + L L G P+LLLD++ A LD +R AL + + Q Sbjct: 294 GFASHGETWSFALALRLGSLELF-RADGAEPVLLLDDVFAELDRHRRAALADVAAGV-EQ 351 Query: 345 IFMT 348 + +T Sbjct: 352 VLIT 355 >gi|47879|emb|CAA44366.1| recF protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 355 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 87/361 (24%), Positives = 157/361 (43%), Gaps = 21/361 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG N GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGPNASGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++ E I + + + D VR I+ + ++ + + + P Sbjct: 66 EAFV-LHGRLQSEERETSIGLTKDKQGDSKVR---IDGTDGHKIADVAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLTGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALAQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + CD A S G+ K+++ + LA + Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRM-LCDGAPVEDTLSRGQLKLLMCALRLAQGQF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 ++ +G + L+D ++ LD+ +R L + SQ+F++ + V D +E +K Sbjct: 289 LTRESGRC-LYLIDAFASELDDGRRGLLASRLKATQSQVFVSELAEHVIDMSDENSKMFT 347 Query: 367 I 367 + Sbjct: 348 V 348 >gi|301154705|emb|CBW14168.1| gap repair protein [Haemophilus parainfluenzae T3T1] Length = 360 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 86/346 (24%), Positives = 155/346 (44%), Gaps = 16/346 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLIVEKFRNLNAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123 P F+ F +++ E S+ L+ R ++ +IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQ--ESQHQWSVGLQKLRQGNTIA--KINGEDGNKIADLAHLLPMQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + +G RR FLD +F + RL++ RN L++ S+ Sbjct: 116 LITPEGLTLLNGGPSFRRAFLDWGLFHHHNSFHSSWVALNRLLKQRNAALSQNQPYSA-I 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++A+L +++ R E AL I + Q P ++++++ F Q + Sbjct: 175 KIWDIELAKLAHQVSDWRAEYAEALRPEIEKTCQL-FLPELEITVS------FHQGWEK- 226 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + EY + L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 227 ETEYGELLAQNFERDKAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + I L+D+ ++ LD+ KR L + GSQ+F+T Sbjct: 286 GEHLMIQKQRHCIFLIDDFASELDQHKRALLAERLQQSGSQVFVTA 331 >gi|149191878|ref|ZP_01870112.1| recombination protein F [Vibrio shilonii AK1] gi|148834270|gb|EDL51273.1| recombination protein F [Vibrio shilonii AK1] Length = 360 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 87/365 (23%), Positives = 156/365 (42%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN + + +G NG GKT++LEAI L GR F+ + V + Sbjct: 6 LIVQQFRNIKACDIELSTGFNFIIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNDC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E I + + + D S ++I + + +L K L + + P Sbjct: 66 QELFVHGRFLNSDQFE----IPVGINKQRDGSTE-VKIGGQSGQKLAQLAKVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSS 185 + + RR F+D VF +P F+RL + RN LL Y + S+ Sbjct: 121 EGFELLTDGPKFRRAFIDWGVFHSEPGFHEAWGRFKRLSKQRNALLKTATSYRELSYWDR 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 AQ+AE +I+ R + + L E Q P ++ L + + D + L E Sbjct: 181 DLAQLAE---QIDDWRRCYVEQMQPLAEEMCQS-FLPEFEIKLGYYRGWEKDTPYAELLE 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ D T GP+++DL + + + S G+ K+++ + LA + Sbjct: 237 RNFER-------DQSLGYTFSGPNKADLRIKVNNTPVEDVL-SRGQLKLMMCALRLAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + +Q+F++ T V D ++E K Sbjct: 289 HLAELTGKQCIYLIDDFASELDSLRRKRLADYLKQTNAQVFVSSITQSQVADMIDENGKM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|254773056|ref|ZP_05214572.1| recombination protein F [Mycobacterium avium subsp. avium ATCC 25291] Length = 385 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 29/340 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + R Sbjct: 3 VRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST +G E ++ LE R+ + ++N +R E+ LR Sbjct: 63 AGADRAVVSTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G ERRR+LD + P D+++++R R LL Sbjct: 118 APEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---L 232 G D+ ++++AE G ++ AR++++N L+ + E + P + + G+ L Sbjct: 178 GALDT--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSL 234 Query: 233 DGKFDQSFCALKEEY----AKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHG 287 A +Y R+ M R L+GPHR DL + + + + Sbjct: 235 GAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGMCLVGPHRDDLEL-WLGERVPKGFA 293 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 S GE + + + LA L+ P+LLLD++ A LD Sbjct: 294 SHGESWSLALSLRLAAYELLRADES-DPVLLLDDVFAELD 332 >gi|325577773|ref|ZP_08148048.1| recombination protein F [Haemophilus parainfluenzae ATCC 33392] gi|325160518|gb|EGC72644.1| recombination protein F [Haemophilus parainfluenzae ATCC 33392] Length = 360 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 85/364 (23%), Positives = 161/364 (44%), Gaps = 15/364 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLIVEKFRNLNAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + R ++ +IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWAVGLQ-KLRQGNTIA--KINGEDGNKIADLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L++ S+ Sbjct: 117 ITPEGLTLLNGGPSFRRAFLDWGLFHHHNSFHSSWVALNRLLKQRNAALSQNQPYST-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ F Q + + Sbjct: 176 IWDIELAKLAHQVSDWRAEYAEALRPEIEKTCQL-FLPELEITVS------FHQGW-EKE 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EY + L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 228 TEYGELLAQNFERDKAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T + + E K Sbjct: 287 EHLMIQKQRHCIFLIDDFASELDQHKRALLAERLQQSGSQVFVTAITQGQLKEMQVEKGK 346 Query: 364 FMRI 367 ++ Sbjct: 347 LFQV 350 >gi|291543408|emb|CBL16517.1| recF protein [Ruminococcus sp. 18P13] Length = 370 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 158/371 (42%), Gaps = 50/371 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L FRN ++L D ++ + VG N GKTN+LEAI L+ R FR D+ Sbjct: 6 LEAEHFRNLEHIQLEPDPRYNLIVGQNAQGKTNLLEAIWLLTGCRSFRGVRERDLV---- 61 Query: 70 PSFFSTFARVEGM------EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 SF R++ E +I+ +R+ + + +N V +R L + Sbjct: 62 -SFDQEVMRMQAAFRDSRREQHITYAIQKSSREKK----ITLNGVPLRGGSRLFAQFQCV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + GL +RR FLD I P++ + FE L RN++L Sbjct: 117 VFTPDDTMLIKGLPDKRRNFLDLCCAQIRPKNMDVLRRFENLTIQRNQVL---------- 166 Query: 184 SSIEA-QMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 SI A L + I A++ + A LS + YVQ+ F + L + G +Q Sbjct: 167 RSIGAGNGTPLDLAIWDAQLAVAGAHLSHIRHSYVQR--FAPVCARLYNIITGGREQLTV 224 Query: 242 ------------------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 +++ Y +KL D T IG R DL+ K + Sbjct: 225 EYQSGMYRDYEMPETVTEPMQDYYLRKLTMSSTDDIRLGYTSIGASRDDLLFKINGKPVR 284 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 GS G++K + + LA A + ++ G +P++LLD++ LD+ ++ ++ IV ++ Sbjct: 285 -DFGSQGQKKSTALVLKLAQAEIYRHSQGQSPVVLLDDVMGELDKSRQELVYSIVQEM-- 341 Query: 344 QIFMTGTDKSV 354 Q+F+T ++ Sbjct: 342 QVFITTCNEGA 352 >gi|168235475|ref|ZP_02660533.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737823|ref|YP_002116780.1| recombination protein F [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|226737833|sp|B4TN05|RECF_SALSV RecName: Full=DNA replication and repair protein recF gi|194713325|gb|ACF92546.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291440|gb|EDY30792.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 357 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 158/364 (43%), Gaps = 21/364 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ + EL + + + P Sbjct: 66 EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSVISAEHVIDMSDENSKMF 348 Query: 366 RISN 369 + Sbjct: 349 TVEK 352 >gi|257470422|ref|ZP_05634513.1| RECF protein [Fusobacterium ulcerans ATCC 49185] gi|317064630|ref|ZP_07929115.1| DNA replication and repair protein recF [Fusobacterium ulcerans ATCC 49185] gi|313690306|gb|EFS27141.1| DNA replication and repair protein recF [Fusobacterium ulcerans ATCC 49185] Length = 375 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 76/360 (21%), Positives = 156/360 (43%), Gaps = 42/360 (11%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 +N FRN + F + +F G NG GKT++LEA+ F S G+ FR +++ + G Sbjct: 6 INYVNFRNLQDGNVKFFPKLNLFYGKNGQGKTSLLEALYFNSTGKSFRTNKSSEMMKYGY 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + + G +++K D + N ++ DE L + +P Sbjct: 66 KR-TGVYVVYKDNIGEKTLTVKFNNEDKKE---YSYNGKKVQ-YDEFYGKLNVVTYIPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR F D + + + + +F ++++ RN+ L E + + + Sbjct: 121 IVLITGSPSVRRNFFDGEIAQTSSEYFQELKNFNKILKIRNKYLKEKKHKEPEFAIYQDE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + G K+ R+E + +S ++ N + KL F D K L +Y Sbjct: 181 FVKYGAKVIEKRMEYVKKISIIL-------NLNYRKL----FDDKK------ELSLQYQC 223 Query: 250 KLFDGRKM------DSMSRR-------------TLIGPHRSDLIVDYCDKAITIAHGSTG 290 L + +KM D++ +R +L GP + D + + + + S G Sbjct: 224 HLGNVKKMTLKEIEDALRKRIEEKLGQELRYGFSLSGPQKDDFLF-FLNSYEAKSTASQG 282 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 E+K ++ + L+ ++ +PIL++D+IS++ D ++++++ + Q+F++ T Sbjct: 283 EKKSIIFSLKLSEIDMVLREKKESPILIIDDISSYFDSNRKDSILNYLEKRNIQVFISST 342 >gi|309807875|ref|ZP_07701807.1| putative recombination protein F [Lactobacillus iners LactinV 01V1-a] gi|308168977|gb|EFO71063.1| putative recombination protein F [Lactobacillus iners LactinV 01V1-a] Length = 347 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 85/334 (25%), Positives = 149/334 (44%), Gaps = 31/334 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ + Sbjct: 6 LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F A + G +I L+ + IN + + + + P Sbjct: 63 --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D I+ + + + ++++ RN L ++ D + + Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242 + Q+A L ++ RV ++ L KEN ++ LD ++ SF Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQKEILDIEYKASFPE 231 Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 E+ Y K L F+ K++ M TL+GPHR DL V + +K + S G+Q+ Sbjct: 232 FDEKDSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 +++ I LA L+ PILLLD++ + LD Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELD 324 >gi|149912066|ref|ZP_01900657.1| recombination protein F [Moritella sp. PE36] gi|149804862|gb|EDM64899.1| recombination protein F [Moritella sp. PE36] Length = 361 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 94/361 (26%), Positives = 160/361 (44%), Gaps = 35/361 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LN ++FRN + A I +GDNG GK+++LEAI +L GR FR + V + G Sbjct: 6 LNFTDFRNIKQASMQPGAGINIILGDNGSGKSSVLEAIHYLGLGRSFRTHLTSRVVQHGE 65 Query: 70 PSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F FS + + + I +K D L+I + EL L + + P Sbjct: 66 KDFTLFSQCQQRLNDDRITTIGLKKSKNSDTE---LKIAGQKAERLAELPGILPLQLIHP 122 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSS 185 + S RR+F+D VF ++ RL++ RN +L G Y + ++ Sbjct: 123 ESFTLLSSGPKLRRQFVDWGVFHLETEFFATWAKLTRLLKQRNAILKSGKRYAELAYWDK 182 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL-----DGKFDQSF 240 E V+ I ++ + Y+++ N P IK +L FL D ++ Q + Sbjct: 183 ------EFAVQGTI--------IAQMRRRYLEQLN-PIIKSALADFLPEYDFDIRYHQGW 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHG--STGEQKVVLV 297 + E A L D T +GP ++D+ + +A + AH S G+ K+ + Sbjct: 228 DS-DIELAALLKQNFMRDQQLGYTSLGPQKADIRI----RANGVPAHDILSRGQLKLAVC 282 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + L+ +S + L+D+ S+ LD+ KR L + + + +Q+F+T DKS + Sbjct: 283 AMRLSQGLFLSQHSNKRCTFLIDDFSSELDDSKRKLLAQYLIESKAQVFVTAIDKSQVTA 342 Query: 358 L 358 L Sbjct: 343 L 343 >gi|148826361|ref|YP_001291114.1| recombination protein F [Haemophilus influenzae PittEE] gi|148716521|gb|ABQ98731.1| recombination protein F [Haemophilus influenzae PittEE] Length = 360 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 82/352 (23%), Positives = 155/352 (44%), Gaps = 22/352 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 10 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 69 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 70 ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 125 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 126 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSAIKI 185 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 W + ++A+ +++ R E AL I + Q P ++++++ F Q + Sbjct: 186 W----DVELAKFAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW- 233 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIF 300 +Y + L + D T GP ++D + + + + S G+ K+++ + Sbjct: 234 EKNADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALR 291 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 LA + I L+D+ ++ LD+ KR L + GSQ+F+T K Sbjct: 292 LAQGEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITK 343 >gi|295129533|ref|YP_003580196.1| DNA recombination and repair protein RecF [Propionibacterium acnes SK137] gi|291377073|gb|ADE00928.1| DNA recombination and repair protein RecF [Propionibacterium acnes SK137] gi|313771063|gb|EFS37029.1| recombination protein F [Propionibacterium acnes HL074PA1] gi|313806859|gb|EFS45357.1| recombination protein F [Propionibacterium acnes HL087PA2] gi|313811772|gb|EFS49486.1| recombination protein F [Propionibacterium acnes HL083PA1] gi|313814218|gb|EFS51932.1| recombination protein F [Propionibacterium acnes HL025PA1] gi|313817646|gb|EFS55360.1| recombination protein F [Propionibacterium acnes HL046PA2] gi|313821529|gb|EFS59243.1| recombination protein F [Propionibacterium acnes HL036PA1] gi|313824527|gb|EFS62241.1| recombination protein F [Propionibacterium acnes HL036PA2] gi|313826196|gb|EFS63910.1| recombination protein F [Propionibacterium acnes HL063PA1] gi|313832306|gb|EFS70020.1| recombination protein F [Propionibacterium acnes HL007PA1] gi|313832766|gb|EFS70480.1| recombination protein F [Propionibacterium acnes HL056PA1] gi|314926330|gb|EFS90161.1| recombination protein F [Propionibacterium acnes HL036PA3] gi|314961666|gb|EFT05767.1| recombination protein F [Propionibacterium acnes HL002PA2] gi|314969080|gb|EFT13178.1| recombination protein F [Propionibacterium acnes HL037PA1] gi|314975201|gb|EFT19296.1| recombination protein F [Propionibacterium acnes HL053PA1] gi|314977614|gb|EFT21709.1| recombination protein F [Propionibacterium acnes HL045PA1] gi|314980254|gb|EFT24348.1| recombination protein F [Propionibacterium acnes HL072PA2] gi|314985200|gb|EFT29292.1| recombination protein F [Propionibacterium acnes HL005PA1] gi|315081494|gb|EFT53470.1| recombination protein F [Propionibacterium acnes HL078PA1] gi|315083083|gb|EFT55059.1| recombination protein F [Propionibacterium acnes HL027PA2] gi|315086616|gb|EFT58592.1| recombination protein F [Propionibacterium acnes HL002PA3] gi|315088018|gb|EFT59994.1| recombination protein F [Propionibacterium acnes HL072PA1] gi|315097159|gb|EFT69135.1| recombination protein F [Propionibacterium acnes HL038PA1] gi|315109863|gb|EFT81839.1| recombination protein F [Propionibacterium acnes HL030PA2] gi|327332503|gb|EGE74238.1| RecF protein [Propionibacterium acnes HL096PA2] gi|327333676|gb|EGE75393.1| RecF protein [Propionibacterium acnes HL096PA3] gi|327444466|gb|EGE91120.1| recombination protein F [Propionibacterium acnes HL013PA2] gi|327446720|gb|EGE93374.1| recombination protein F [Propionibacterium acnes HL043PA2] gi|327448838|gb|EGE95492.1| recombination protein F [Propionibacterium acnes HL043PA1] gi|328757973|gb|EGF71589.1| recombination protein F [Propionibacterium acnes HL020PA1] gi|328759814|gb|EGF73405.1| RecF protein [Propionibacterium acnes HL099PA1] Length = 401 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 92/370 (24%), Positives = 168/370 (45%), Gaps = 28/370 (7%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175 P+ + G +RR FLD +V PR D+ER+++ RN LL + Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G + + ++A +G ++ AR++ ++A+ L +E P L+ + Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTI 244 Query: 232 -LDGKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDK 280 L+G + + S ++E A + D R+ D + R TL+GP R D+I+ + + Sbjct: 245 DLEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362 Query: 341 IGSQIFMTGT 350 Q+ +T Sbjct: 363 -ADQVLVTAA 371 >gi|254818681|ref|ZP_05223682.1| recombination protein F [Mycobacterium intracellulare ATCC 13950] Length = 385 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 92/360 (25%), Positives = 154/360 (42%), Gaps = 24/360 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + R Sbjct: 3 VRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST +G E ++ LE R+ + ++N +R E+ LR Sbjct: 63 AGAARAVVSTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEGYFDS 180 P + G ERRR+LD + P D+E+++R R LL D Sbjct: 118 APEDLALVRGDPSERRRYLDDLATLRRPAVAAVRADYEKVLRQRTALLKSLSGARYRGDH 177 Query: 181 SWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGK 235 S ++ ++++AE G ++ AR+++ N L+ + + Q +S L Sbjct: 178 SALDTLDVWDSRLAEHGAELMSARIDLANQLTPEVEKAYQLLAPGSRAASISYRSSLGAD 237 Query: 236 FDQSFCALKEEY----AKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTG 290 E+ R+ + R L+GPHR DL + D+ S G Sbjct: 238 AAADIAGGDREFLEAALLAALAERRSAELERGMCLVGPHRDDLELWLGDQPAK-GFASHG 296 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 E + + LA L+ P+LLLD++ A LD +R AL V + Q+ +T Sbjct: 297 ESWSFALALRLAAYELLRADES-DPVLLLDDVFAELDATRRRALA-TVAESAEQVLVTAA 354 >gi|123444340|ref|YP_001008305.1| recombination protein F [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166221878|sp|A1JT78|RECF_YERE8 RecName: Full=DNA replication and repair protein recF gi|122091301|emb|CAL14187.1| DNA metabolism protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 361 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L + VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E + + + + D VR I+ V EL + L + + P Sbjct: 66 AEFV-LHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFVRDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|297616217|ref|YP_003701376.1| DNA replication and repair protein RecF [Syntrophothermus lipocalidus DSM 12680] gi|297144054|gb|ADI00811.1| DNA replication and repair protein RecF [Syntrophothermus lipocalidus DSM 12680] Length = 368 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 89/366 (24%), Positives = 152/366 (41%), Gaps = 37/366 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L FRN S + ++ + +G N GKTN+LEAI + R FR A D+ Sbjct: 1 MKILKLETRFFRNLVSCVIEPCSRINVILGKNAQGKTNLLEAIYVVGHNRSFRGARDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 G + R++ L + I E R S + L++N+ + L+ Sbjct: 61 VTHGRREGY----RLKVTYALDERIIIFEQRYSESKNKVLRLNNKP--AASKTQHRLKSV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + G RR FLD ++ + P + R + +++++ RN L + Sbjct: 115 VFTPEDLYLIKGEPERRRNFLDGILCQLRPEYERTLESYKKILGRRNAYLKQSRSFGQGM 174 Query: 184 SSIEAQMAELGVKINIARVEM-------INALSSLI--------MEYVQKENFPHIKLSL 228 ++ E V + AR+ + ++ L L+ M YV +FP L Sbjct: 175 RVLQGMFIEAAVPLICARLNLAAILEKEVSKLYQLLSGEAEDVCMRYVL--SFPLETGKL 232 Query: 229 TG-FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 T L D++ K++ K+ TL+GPHR D + Y + Sbjct: 233 TPDLLAASLDKALEVSKDKELKQGI-----------TLVGPHRDDFNL-YLRGHNARTYA 280 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S G+Q+ + V + L N G+ P+LLLDE+ A LD+++R L + Q F+ Sbjct: 281 SQGQQRNLAVSLKLGELATYKNIKGYFPVLLLDEVLAELDKNRRTLLLEYLQQAEFQTFI 340 Query: 348 TGTDKS 353 + ++ Sbjct: 341 SSVERE 346 >gi|124026724|ref|YP_001015839.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. NATL1A] gi|123961792|gb|ABM76575.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. NATL1A] Length = 348 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 92/343 (26%), Positives = 155/343 (45%), Gaps = 36/343 (10%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM-EGLADIS 89 I +G NGVGK+N+LE+I LS R R D+ + A + M E +S Sbjct: 9 IVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLI-----YWDQDQACLSAMIEDDQKLS 63 Query: 90 IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI-FSGLSME--------R 140 ++L + R + + + ++ R +D L+ M + FS L +E R Sbjct: 64 LELNRKGGR--KAYKNDKLLNRQID----------LIGPMRSVGFSALDLELIRGEPSLR 111 Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGV 195 R +LDR+V ++P + + F RL+R R++L +SS S + QMA + Sbjct: 112 RHWLDRIVQQLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLDSFDMQMALVST 171 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFD 253 +I+ R +++ L + + Q + KL +T K + +S +E ++L + Sbjct: 172 RIHRRRRRILDRLLPIASSWQQHLSNSQEKLDITYLPGSKLEGEESERVWRESIERQLLE 231 Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313 R + ++ +GPHR D+ D GS G+Q+ +++ + LA LI G Sbjct: 232 MRSEEEITGNCRVGPHRDDVQFSIND-VDARRFGSAGQQRTIVLSLKLAELELIKMVYGK 290 Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 APILLLD++ A LD KR L Q ++ T F+ Sbjct: 291 APILLLDDVLAELDP-KRQLLLLEAVGQKHQCLISATHLESFE 332 >gi|50841500|ref|YP_054727.1| recombination protein F [Propionibacterium acnes KPA171202] gi|81612508|sp|Q6ABL2|RECF_PROAC RecName: Full=DNA replication and repair protein recF gi|50839102|gb|AAT81769.1| DNA replication and repair protein RecF [Propionibacterium acnes KPA171202] Length = 394 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 166/367 (45%), Gaps = 28/367 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ + R Sbjct: 3 VEHLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 +G+ G + + +++E R+ R + R D L LR Sbjct: 63 LGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTVVFS 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEGYF 178 P+ + G +RR FLD +V PR D+ER+++ RN LL + G Sbjct: 122 PNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAGAE 181 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-----LD 233 + + ++A +G ++ AR++ ++A+ L +E P L+ + L+ Sbjct: 182 IGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTIDLE 240 Query: 234 GKF------DQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKAIT 283 G + + S ++E A + D R+ D + R TL+GP R D+I+ + + Sbjct: 241 GLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGEMPA 299 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 300 KGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ-AD 357 Query: 344 QIFMTGT 350 Q+ +T Sbjct: 358 QVLVTAA 364 >gi|307717720|ref|YP_003873252.1| DNA replication and repair protein RecF [Spirochaeta thermophila DSM 6192] gi|306531445|gb|ADN00979.1| DNA replication and repair protein RecF [Spirochaeta thermophila DSM 6192] Length = 363 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 100/354 (28%), Positives = 157/354 (44%), Gaps = 39/354 (11%) Query: 9 FLNISE--FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 FL I FRN + + A +FVG+NG GKTNILE + L G FR + R Sbjct: 2 FLTIGSEGFRNIVTGTIDVGAPVVVFVGENGQGKTNILELVYLLCYGVSFRTRQNTFLIR 61 Query: 67 IGSPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 G S RV G EG + I +E + + + +N+ I EL I Sbjct: 62 RGRSS-----CRVHGEFRTEEGYI-LPILVEI--GPTSKEIFLNEKKIANRKEL---FSI 110 Query: 123 S-WLVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 S +V + D I G + R+F+++++ +DP + + R++ RN L E D Sbjct: 111 SPCIVFAHDDIQFVVGSPLLHRQFMNQILTLVDPLFLDSLRTYNRILTSRNEALKEARED 170 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q+A++ +I + R M++A SS++ ++ GF FD S Sbjct: 171 --LLDVYDDQLADIAHQITVKRERMMDAFSSILRSTCEE----------FGFSGNVFDVS 218 Query: 240 FCAL-----KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + A KEE + L R D M T GPHR L+ + + STGE ++ Sbjct: 219 YRASLKGDGKEELMRILRSERTQDLMVGFTRRGPHRDRLVFTMNGHPVP-DYASTGEIRL 277 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + + + +A + +TG PILL D++ LD KR + ++ G Q F T Sbjct: 278 LSLLLRVAQTTYVRESTGKTPILLFDDVLLELDPLKRRRVVEMIPH-GRQSFFT 330 >gi|170780467|ref|YP_001708799.1| recombination protein F [Clavibacter michiganensis subsp. sepedonicus] gi|189039619|sp|B0RH73|RECF_CLAMS RecName: Full=DNA replication and repair protein recF gi|169155035|emb|CAQ00131.1| DNA replication protein [Clavibacter michiganensis subsp. sepedonicus] Length = 408 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 94/382 (24%), Positives = 167/382 (43%), Gaps = 40/382 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FRNY + T+FVG NG GKTN++EA+ FLS R ++ + R Sbjct: 3 VRHLSLGDFRNYTRADVALLPGATLFVGSNGQGKTNLVEALGFLSTLGSHRVSTDQALVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWL 125 G+ S A + + A +++E + +RS Q+N + EL ++ Sbjct: 63 QGAES-----AVIRALLQHAGRELRVEVQINRSAANRAQVNGTATK-TRELPRYFSSVLF 116 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---FDSSW 182 P + G RRR LD+++ PR + D++R ++ RN LL + Sbjct: 117 APEDLALVRGDPSGRRRLLDQLLVLRTPRLAGVLSDYDRALKQRNTLLKSARARGMKADQ 176 Query: 183 CSSI---EAQMAELGVKINIARVEMINALSSLI----MEYVQKENFPHIKLSL------- 228 S++ + ++ +G +I AR ++ +L + + ++ P + L Sbjct: 177 LSTLDIWDERLVAIGSQIIAARGALVESLQPELARAYLAVAGSDHGPSARPELSILADDP 236 Query: 229 --------TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 TG DG + + + R + TL+GPHR D++ + Sbjct: 237 GEDDVADETGARDGGRFTRTEDVVPVFTAAIARMRPRELERGLTLVGPHRDDVLF-RLNG 295 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLI--SNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 + S GE + I LA A L+ + TG P+L+LD++ A LD+ +R L V Sbjct: 296 LPAKGYASHGESWSFALAIKLASAELLRRDSQTG-DPVLILDDVFAELDQARRGRLAEAV 354 Query: 339 TDIGSQIFMTGTDKSVFDSLNE 360 T Q+ +T +VF+ + E Sbjct: 355 TGF-EQVLITA---AVFEDVPE 372 >gi|167765194|ref|ZP_02437307.1| hypothetical protein BACSTE_03580 [Bacteroides stercoris ATCC 43183] gi|167696822|gb|EDS13401.1| hypothetical protein BACSTE_03580 [Bacteroides stercoris ATCC 43183] Length = 378 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 93/355 (26%), Positives = 156/355 (43%), Gaps = 16/355 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + R Sbjct: 3 LKRISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 S FF E +G +I ++ R + + + R+ D + L + + Sbjct: 63 HDS-DFFVIQGFYEAADGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVMV 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184 P+ + SG S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 119 SPADSVLISGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSEMPVEEELFL 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 E MA+ G + R E I + + + K+ LT + D S A+ Sbjct: 179 VWEEMMAQAGEVVFHKREEFIREFIPIFQSFYSFISQDKEKVGLT-YDSHARDASLLAVL 237 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +E R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 238 KE-------NRMRDQIMGFSLRGIHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQF 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 290 DFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRI 344 >gi|327404856|ref|YP_004345694.1| DNA replication and repair protein recF [Fluviicola taffensis DSM 16823] gi|327320364|gb|AEA44856.1| DNA replication and repair protein recF [Fluviicola taffensis DSM 16823] Length = 364 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 89/366 (24%), Positives = 160/366 (43%), Gaps = 26/366 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRN++ F+A VG NG GKTN+L+A+ +LS R SY + T Sbjct: 3 VESLSLVNFRNHSEAEFQFEAGVNCIVGKNGSGKTNVLDAVHYLSMCR-----SYLNPTD 57 Query: 67 IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F F ++G M+ ++ + + R+ D + H + Sbjct: 58 KQNIRFNEQFFVIQGCWMKDEQPFNLYCGVKAGSKKVFKKNKKEYNRLADHIG-HFPVVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P + S S RRR++D ++ D + + + +++ RN LL G+F+ Sbjct: 117 ISPYDTDLISEGSEVRRRWMDGIISQFDHEYLSDLQRYNKVLDQRNALLKLQFENGFFER 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS- 239 + Q+ + G I+ RV I+A L Y + + +SL + K ++ Sbjct: 177 ESIEIWDEQLIKYGTAIHNKRVSFIDAFIPLFQHYYKWISQEQESVSLN--YESKLSETD 234 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVG 298 F L ++ K D T +G H+ D + + + + I GS G+QK L+ Sbjct: 235 FRTLIQQAYPK-------DMRVHYTSVGIHKDD--ITFLLEGLPIKRFGSQGQQKSFLIA 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDS 357 + LA + PILLLD+I LD + L +V+ + Q+ +T TD+ + Sbjct: 286 LRLAQFDWLKERLNQTPILLLDDIFDKLDNLRVAQLMELVSKNTFGQVLVTDTDEIRVSA 345 Query: 358 LNETAK 363 + ET + Sbjct: 346 IFETIQ 351 >gi|315634817|ref|ZP_07890099.1| recombination protein F [Aggregatibacter segnis ATCC 33393] gi|315476369|gb|EFU67119.1| recombination protein F [Aggregatibacter segnis ATCC 33393] Length = 358 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 83/352 (23%), Positives = 158/352 (44%), Gaps = 20/352 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN ++ L D VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDQPH-FTLFGQIQEQQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F RL++ RN L + SS+ Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVSFYTLWASLSRLLKQRNAALQQ---VSSYQQ 173 Query: 185 S--IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + ++ +L ++++ R E AL I E + P + +S++ F Q + Sbjct: 174 MKIWDVELVKLAEQVSLLRAEYAQALQPEI-EQTCRLFLPELDISVS------FHQGWEK 226 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301 ++ YA+ L + D T+ GP ++D + + + S G+ K+++ + L Sbjct: 227 -EQNYAELLARNFERDRALGYTVSGPQKADF--RFKANGLPVEDILSRGQLKLLMCALRL 283 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 A + I L+D+ ++ LD+ KR+ L + + + GSQ+F+T ++ Sbjct: 284 AQGEHLMQQKQRHCIFLIDDFASELDQTKRSLLAQRLQNSGSQVFVTAITQN 335 >gi|325283210|ref|YP_004255751.1| DNA replication and repair protein recF [Deinococcus proteolyticus MRP] gi|324315019|gb|ADY26134.1| DNA replication and repair protein recF [Deinococcus proteolyticus MRP] Length = 357 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 95/352 (26%), Positives = 156/352 (44%), Gaps = 27/352 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+ +RN A L F A T G+NG GKTN+LEA GR ++ Sbjct: 4 VRLSKLSTLNYRNLAPDTLEFPAGVTGVWGENGAGKTNLLEAAYLALTGR-TEAGRLEEL 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + R + +EG +S++ E R R L+++ V R D L + + Sbjct: 63 VLAGQ---AEAYVRADVLEG-GSLSVQ-EVGIGRGRRQLKVDGVRTRTGD-LPRGSAV-L 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G +RR +LD ++ + R+ ++ +ER + RN L EG W Sbjct: 116 IRPEDSELVFGSPSQRRAYLDSLLGRLSARYAEQLSRYERTVSQRNAALREG---QDWAL 172 Query: 185 SI-EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + +A + LG I R + L L + +L LD + +S Sbjct: 173 DVWDAPLVTLGRDIMEFRARALVRLEELA-------RHANAELGSRKALDIRLLESTDPA 225 Query: 244 KEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFL 301 YA+ L R+ + ++R TL GPHR DL + A T A S GE + + + Sbjct: 226 S--YAQTLH-ARRAEELARGVTLTGPHRDDLELTLGGLNAGTYA--SRGEGRTAALSLRY 280 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 A +L+S G P+LL+D+ +A LD +R L + + Q +TGT++ Sbjct: 281 AELQLLSERFGEPPVLLIDDWTAELDPQRRQFLLDLAASV-PQAIVTGTEQP 331 >gi|75909597|ref|YP_323893.1| recombination protein F [Anabaena variabilis ATCC 29413] gi|97180310|sp|Q3M7N8|RECF_ANAVT RecName: Full=DNA replication and repair protein recF gi|75703322|gb|ABA22998.1| DNA replication and repair protein RecF [Anabaena variabilis ATCC 29413] Length = 376 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 177/376 (47%), Gaps = 50/376 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ FRNY ++ F A TI VG+N GK+N+LEA+ L+ R R A D+ + Sbjct: 3 LKTLHLRHFRNYYDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMARDRDLVQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P A +E G++D+S+ L R+ R R + +N + L + + ++ Sbjct: 63 EEEP-LAQINATLERDTGVSDLSLILR-RNGR--RTVALNG------ESLRRQMDFLGVL 112 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 ++ FS L +E RR +LD ++ ++P + + + +++R RN L + Sbjct: 113 NAVQ--FSSLDLELVRGSPEVRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAYL-KKLQ 169 Query: 179 DSSWCSS------IEAQMAELGVKI-------NIARVEMINALSSLI---MEYVQKENFP 222 DS+ + +AQ+ G K+ + A + I E +Q P Sbjct: 170 DSALTTQDSALAIWDAQLVTTGTKVIRRRDRALARLAPLATAWHTSISGSTEVLQISYTP 229 Query: 223 HIKLSLTGFLDGKFDQSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 +++L + Q+F + L++ +++ G TL+GPHR ++ + ++ Sbjct: 230 NVQLMQNQ--PEQVQQAFLSQLQQRAVPEMYRG--------TTLVGPHRDEVELT-INQT 278 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 +GS G+Q+ +++ + LA +LI P+LLLD++ A LD ++N L + D Sbjct: 279 PARQYGSQGQQRTLVLALKLAELQLIEEVVKEPPLLLLDDVLAELDPSRQNQLLDTIQD- 337 Query: 342 GSQIFMTGTDKSVFDS 357 Q +T T S FD+ Sbjct: 338 RFQTLITTTHLSSFDA 353 >gi|330995529|ref|ZP_08319432.1| DNA replication and repair protein RecF [Paraprevotella xylaniphila YIT 11841] gi|329575309|gb|EGG56854.1| DNA replication and repair protein RecF [Paraprevotella xylaniphila YIT 11841] Length = 365 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 91/379 (24%), Positives = 165/379 (43%), Gaps = 37/379 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ ++N A L F + F+G NG GKTN+L+A+ FLS + + + R Sbjct: 3 LKKISVLNYKNIAQAELAFSPKMNCFIGHNGEGKTNLLDAVYFLSFCKSATHSVDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC------LQINDVVIRVVDELNKHL 120 G F ++G + E+ + V C + + L++H+ Sbjct: 63 HGEDFFM--------LQG----EYEHESGEPEEVYCGLKRKQKKRFKRNKKEYKRLSEHI 110 Query: 121 RISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEG 176 + +V P+ + SG S ERRRF+D ++ D + ++ + R ++ RN LL E Sbjct: 111 GLVPVVLVSPADADLISGGSEERRRFMDMVIVQYDHEYLDALVRYNRALQQRNVLLKQEE 170 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 D + E MA+ G KI R + + ++ + + + L G+ Sbjct: 171 EPDEALIGLWEEMMAQEGEKIYEKRKAYVEEFVPVFQDFYARISRGKEHVGLRYISHGQR 230 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ + AK D + +L G H+ DL + + I GS G+ K L Sbjct: 231 GDLLEVIRRDRAK--------DRIMGYSLHGVHKDDLEMTLGEFPIK-REGSQGQNKTYL 281 Query: 297 VGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV 354 + + LA + T + P+LLLD+I LD D+ + ++V+ + QIF+T T++ Sbjct: 282 IALKLAQFDFLRRTGSRTTPLLLLDDIFDKLDADRVEQIVKLVSGEQFGQIFVTDTNRDH 341 Query: 355 FDSL----NETAKFMRISN 369 D + +E K + N Sbjct: 342 LDRILEKTDEDYKLFYVEN 360 >gi|329297783|ref|ZP_08255119.1| recombination protein F [Plautia stali symbiont] Length = 361 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 150/361 (41%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEQADLTLAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R+EG E + + D VR I+ V EL + L + + P Sbjct: 66 DAFV-LHGRIEGSERELAVGLSKNRAGDSKVR---IDGSDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F P + RL++ RN L + S + + Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHAYPGFFLAWSNLRRLLKQRNAALRQ-VARYSQIRPWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E A++S I + P LS + F G +S ++ + Sbjct: 181 LVPLAEQISAWRAEYSAAIASEITATC-SQFLPEFALSFS-FQRGWDKES------DFGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + + S G+ K+++ + LA ++ Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEYLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAKFMRIS 368 ++G + L+D+ ++ LD+ +R L + +Q+F++ + V D +E K R+ Sbjct: 292 SSGRRCLYLIDDFASELDDTRRRLLAECLKATQAQVFVSAIGVEHVIDMSDEKGKMFRVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|294665501|ref|ZP_06730784.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604704|gb|EFF48072.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 368 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 8/342 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + + G+ Sbjct: 6 LSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 EG + + + R +++ + + L L + P Sbjct: 66 NDLEVFVEWKEGGGAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + SG RRRFLD +F ++P + R ++ RN LL +G + + + Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQGA-QPRLLDAWDNE 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +AE G + R+ + L ++ V P + LS F G + + +L A Sbjct: 185 LAESGENLTSRRMRYLERLQDRMVP-VADAIAPALGLSALTFAPG-WKRHEVSL----AD 238 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L R+ D + T GPHR+D + + A S G+ K+ + LA A + Sbjct: 239 ALLLARERDRQNGYTSQGPHRADWMPSFLALPAKDAL-SRGQAKLTALACLLAQAEDFAF 297 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 G P++ LD++ + LD + + + + +Q+ +T T+ Sbjct: 298 ERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATE 339 >gi|289424466|ref|ZP_06426249.1| DNA replication and repair protein RecF [Propionibacterium acnes SK187] gi|289427445|ref|ZP_06429158.1| DNA replication and repair protein RecF [Propionibacterium acnes J165] gi|289155163|gb|EFD03845.1| DNA replication and repair protein RecF [Propionibacterium acnes SK187] gi|289159375|gb|EFD07566.1| DNA replication and repair protein RecF [Propionibacterium acnes J165] gi|332674402|gb|AEE71218.1| recombination protein F [Propionibacterium acnes 266] Length = 394 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 166/367 (45%), Gaps = 28/367 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ + R Sbjct: 3 VERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 +G+ G + + +++E R+ R + R D L LR Sbjct: 63 LGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTVVFS 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEGYF 178 P+ + G +RR FLD +V PR D+ER+++ RN LL + G Sbjct: 122 PNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAGAE 181 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-----LD 233 + + ++A +G ++ AR++ ++A+ L +E P L+ + L+ Sbjct: 182 IGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTIDLE 240 Query: 234 GKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDKAIT 283 G + + S ++E A + D R+ D + R TL+GP R D+I+ + + Sbjct: 241 GLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGEMPA 299 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 300 KGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ-AD 357 Query: 344 QIFMTGT 350 Q+ +T Sbjct: 358 QVLVTAA 364 >gi|194472063|ref|ZP_03078047.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458427|gb|EDX47266.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 357 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 158/362 (43%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++G E I + + + D VR I+ + EL + + + Sbjct: 66 EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITSEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186 + +G RR FLD F + + +RL++ RN L + ++ W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +A++ + + Q + P L+ + F G ++ + Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|118465169|ref|YP_879306.1| recombination protein F [Mycobacterium avium 104] gi|166220715|sp|A0Q8R8|RECF_MYCA1 RecName: Full=DNA replication and repair protein recF gi|118166456|gb|ABK67353.1| DNA replication and repair protein RecF [Mycobacterium avium 104] Length = 385 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 86/340 (25%), Positives = 150/340 (44%), Gaps = 29/340 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + R Sbjct: 3 VRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST +G E ++ LE R+ + ++N +R E+ LR Sbjct: 63 AGADRTVVSTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G ERRR+LD + P D+++++R R LL Sbjct: 118 APEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---L 232 G D+ ++++AE G ++ AR++++N L+ + E + P + + G+ L Sbjct: 178 GALDT--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSL 234 Query: 233 DGKFDQSFCALKEEY----AKKLFDGRKMDSMSRRT-LIGPHRSDLIVDYCDKAITIAHG 287 A +Y R+ + R L+GPHR DL + + + + Sbjct: 235 GAAAAAEVNAGDRDYLEAALLAGLAARRYAELERGVCLVGPHRDDLEL-WLGEQVAKGFA 293 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 S GE + + + LA L+ P+LLLD++ A LD Sbjct: 294 SHGESWSLALSLRLAAYELLRADES-DPVLLLDDVFAELD 332 >gi|114319169|ref|YP_740852.1| DNA replication and repair protein RecF [Alkalilimnicola ehrlichii MLHE-1] gi|114225563|gb|ABI55362.1| DNA replication and repair protein RecF [Alkalilimnicola ehrlichii MLHE-1] Length = 354 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 92/360 (25%), Positives = 158/360 (43%), Gaps = 32/360 (8%) Query: 16 RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFST 75 RN L A + VG N GKT++LEAI F++ R FR A + G + + Sbjct: 9 RNLQPFELTPGAGINVVVGANAAGKTSLLEAIYFVARTRSFRATRTAQMIGNGHEALW-V 67 Query: 76 FARVEGME-GLA----DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130 A+ +G G+A + ++L+ RD RS+ EL ++L + + Sbjct: 68 RAQTQGHTIGVARDSQETQVRLDGRDGRSL-------------SELARYLPVQVINSEHQ 114 Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190 R+ RR FL+ VF ++P+ + R +R RN L G +W + + Sbjct: 115 RLLLDGPAVRRSFLNWAVFHVEPQFSTVWGRYVRALRQRNAALKAGESRLAWA--YDEGL 172 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E I+ R +I+AL V++ P ++L + D E A + Sbjct: 173 IETADTIDRNRRHLIDALEPRWSALVRRW-LPDEPVALHYRPGWRSD-------EPLADR 224 Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISN 309 L R++D T GPHR+DL + + H S G+QK++++ + LA A + Sbjct: 225 LEAQRELDRQRGFTNSGPHRADL--SFRVAGVEAQHRLSRGQQKLLVLALLLAQAAVTHT 282 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 TG + LL+D+++A LD +R A+ + G+Q F+T + + A++ + Sbjct: 283 LTGQSLTLLVDDLAAELDPARRAAVVEAIASSGNQAFLTAIEPGDIPLAPDAAQWFHVEQ 342 >gi|212694619|ref|ZP_03302747.1| hypothetical protein BACDOR_04149 [Bacteroides dorei DSM 17855] gi|212663120|gb|EEB23694.1| hypothetical protein BACDOR_04149 [Bacteroides dorei DSM 17855] Length = 371 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 37/366 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N L F + F+G NG+GKTN+L+A+ +LS + + R Sbjct: 3 LKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E +G ++ L+ R + + + + L+ H+ L Sbjct: 63 -HEGDFFVIQGFYETNQGDPEEVYCGLKCRQKKQFKRNK------KEYSRLSDHIGFIPL 115 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 V P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E D Sbjct: 116 VMVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLDG 234 E MA G + R E I + S I + +K N + ++ G L Sbjct: 176 LMLVWEEMMAFAGEIVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAMNGNL-- 233 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 +KE RK D + +L G H+ DL++ D I GS G+ K Sbjct: 234 -----LDIIKE--------SRKRDRIMGYSLRGIHKDDLVMQLGDFPIK-REGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK 352 L+ + LA + T + P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLIALKLAQFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNR 339 Query: 353 SVFDSL 358 D + Sbjct: 340 DHLDKI 345 >gi|190572095|ref|YP_001969940.1| recombination protein F [Stenotrophomonas maltophilia K279a] gi|226737840|sp|B2FT82|RECF_STRMK RecName: Full=DNA replication and repair protein recF gi|190010017|emb|CAQ43622.1| putative DNA replication and repair protein RecF [Stenotrophomonas maltophilia K279a] Length = 364 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 88/362 (24%), Positives = 153/362 (42%), Gaps = 15/362 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + + R ++++ L + GDNG GKT++LEA+ ++ GR FR + R Sbjct: 3 IRRLALHQLRRFSAVDLSPQPGLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISI---KLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G + F VE E AD K R +++ + + L L + Sbjct: 63 QGQEAL-EIF--VEWDEQRADHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVV 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + SG RRRFLD +F ++P + R ++ RN LL +G S Sbjct: 120 TFEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQG-GPSRML 178 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + ++AE G + R + L + +L + G + + Sbjct: 179 DTWDHELAEAGEPLTSRRQHYLERLQQRTVALAASLA---PQLGIQGL---ELSPGWRRH 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + A L R+ D + T +GPHR+D VD+ A S G+ K+ + LA Sbjct: 233 ELPLADALLLARERDRQAGYTSVGPHRADWSVDFHSIPGRDAL-SRGQAKLTALACLLAQ 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362 A + G P++ LD++++ LD + + + + +QIF+T T+ + L A Sbjct: 292 AEDYAEQRGEWPVIALDDLASELDRTHQARVLERLLNGPAQIFITATETPAALLDLTHIA 351 Query: 363 KF 364 +F Sbjct: 352 RF 353 >gi|323465561|gb|ADX69248.1| DNA replication and repair protein recF [Lactobacillus helveticus H10] Length = 375 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 87/351 (24%), Positives = 152/351 (43%), Gaps = 24/351 (6%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRN L + FD IF+G N GKTN+LEAI FL+ R R S D IG Sbjct: 8 VQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNS--DKELIG--- 62 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F + + G + + + L + + + IN V + + L P Sbjct: 63 FGGEYTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAILFSPEDLE 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + G RRRF+D+ I+ + + +++ +N L + D + + Sbjct: 123 LIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQVFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-----KLSLTGFLDGKFDQSFCA 242 Q+A + ++ R + + LS + + + HI KL++ ++ Sbjct: 183 DQLAGIAAEVIFRRFKFLRYLS-----HYASDAYAHISLGGEKLAIAYHPSVSTIEADDT 237 Query: 243 LKEEYAKKL--FDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E Y K L F+ K M + T GPHR D+ K + + S G+Q+ + + + Sbjct: 238 VEEIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIALSV 296 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LA +L+ T P+LLLD++ + LD +++AL + +Q F+T T Sbjct: 297 KLAEIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYIHG-KTQTFITTT 346 >gi|319785623|ref|YP_004145098.1| DNA replication and repair protein RecF [Pseudoxanthomonas suwonensis 11-1] gi|317464135|gb|ADV25867.1| DNA replication and repair protein RecF [Pseudoxanthomonas suwonensis 11-1] Length = 376 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 163/379 (43%), Gaps = 26/379 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FR + L + +G NG GKT++LEA+ ++ GR FR + Sbjct: 1 MRVTRLQLRDFRRFHETGLEPGPGVNLILGANGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIK---LETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R S + F E + + ++ L D L DV + EL L Sbjct: 61 VRE-SAAALEVFVEWEQADAVGVPQLRRAGLRHAGDTWTGRLDGRDVA--QLGELCAALA 117 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAID----PRHRRRMIDFERLMRGRNRLLTEGY 177 + P + SG + RRRF+D +F ++ P RR + R +R RN LL G Sbjct: 118 VVTFDPGSHALISGAADNRRRFMDWGLFHVEQDFLPPWRR----YARALRQRNALLKAGG 173 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KF 236 ++ + + ++AE G + R + L +++ +LS + L G +F Sbjct: 174 SNAQ-LDAWDHELAESGEALTSHREAYLAELEPQVLDTA-------ARLSGSLHLQGLEF 225 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + + A L GR D T +GPHR+D + Y A S G+ K+ Sbjct: 226 QPGWRRHEVPLADALLLGRDRDRAMGYTGVGPHRADWKLGYVGLPGREAL-SRGQTKLAA 284 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTD-KSV 354 + + LA AR + G P++ LD++ + LD + + + R + D G Q+ +T T+ Sbjct: 285 LAMLLAQARDFARRRGHWPVMALDDLPSELDREHQQRVLRFLADQPGVQLLVTATETPPA 344 Query: 355 FDSLNETAKFMRISNHQAL 373 ++L F+ H A+ Sbjct: 345 LEALEGLPMFVFHVEHGAI 363 >gi|238759586|ref|ZP_04620748.1| DNA replication and repair protein recF [Yersinia aldovae ATCC 35236] gi|238702245|gb|EEP94800.1| DNA replication and repair protein recF [Yersinia aldovae ATCC 35236] Length = 361 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 153/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L + VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E + + + + D VR I+ V EL + L + + P Sbjct: 66 AEFV-LHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRPWDLE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R A+++ I P LS + F G +S +Y + Sbjct: 181 IIPLAERISEWRAAYSGAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T IGPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTAIGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + LLD+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGKMFRVE 351 Query: 369 N 369 + Sbjct: 352 H 352 >gi|68249576|ref|YP_248688.1| recombination protein F [Haemophilus influenzae 86-028NP] gi|145632377|ref|ZP_01788112.1| recombination protein F [Haemophilus influenzae 3655] gi|145640665|ref|ZP_01796248.1| recombination protein F [Haemophilus influenzae R3021] gi|81335995|sp|Q4QLR9|RECF_HAEI8 RecName: Full=DNA replication and repair protein recF gi|68057775|gb|AAX88028.1| DNA replication and repair protein RecF [Haemophilus influenzae 86-028NP] gi|144987284|gb|EDJ93814.1| recombination protein F [Haemophilus influenzae 3655] gi|145274591|gb|EDK14454.1| recombination protein F [Haemophilus influenzae 22.4-21] gi|301169717|emb|CBW29318.1| gap repair protein [Haemophilus influenzae 10810] Length = 359 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 162/367 (44%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ F Q + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCVLRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|92112139|ref|YP_572067.1| recombination protein F [Chromohalobacter salexigens DSM 3043] gi|122421034|sp|Q1R1P0|RECF_CHRSD RecName: Full=DNA replication and repair protein recF gi|91795229|gb|ABE57368.1| DNA replication and repair protein RecF [Chromohalobacter salexigens DSM 3043] Length = 361 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 92/356 (25%), Positives = 148/356 (41%), Gaps = 23/356 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ LN RN A+L + + G NG GKT++LE + L R FR Sbjct: 1 MPLERLNFLGLRNLAALDMRPGPGINLITGANGSGKTSLLEGMHVLGMARSFRTQKLKHA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI---NDVVIRVVDELNKHLR 121 + + + RV G D + L R R L+I + +RV L + L Sbjct: 61 IAHDADAV-TLHGRVAG-----DPPVALGVRRARDASELEIRLDGERGVRVA-RLAEALP 113 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + + P R+ G RR FLD VF + R ++ RN LL D+ Sbjct: 114 LQLINPDAFRLLEGSPAARREFLDWGVFHVKHEFFEAWRRVRRALKHRNALLRHDRIDAR 173 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQS 239 E ++A E+++AL S M K E+ H L L+G L ++ + Sbjct: 174 SMRVWEQELAHWS--------ELLDALRSEYMAQFAKAFEDTLHELLPLSG-LSLRYYRG 224 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + + + L GR D T GP R+DL + +A + S G+QK+V+ + Sbjct: 225 WDK-QRGLLEVLEGGRDTDRQMGFTQQGPQRADLRLRIGKRA-AVEELSRGQQKLVVSAL 282 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 LA RL+ TG + L+D++ A LD R + + Q+F+T ++ Sbjct: 283 KLAQGRLLDELTGRTCVYLIDDLPAELDVTHRRIFCHWLERLRCQVFITSVEREAL 338 >gi|319901304|ref|YP_004161032.1| DNA replication and repair protein RecF [Bacteroides helcogenes P 36-108] gi|319416335|gb|ADV43446.1| DNA replication and repair protein RecF [Bacteroides helcogenes P 36-108] Length = 369 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 91/356 (25%), Positives = 157/356 (44%), Gaps = 18/356 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+AI FLS + + D Sbjct: 3 LKRISILNYKNLEQVELSFSAKLNCFFGQNGMGKTNLLDAIYFLSFCKS--AGNPVDSQN 60 Query: 67 IGSPS-FFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 I + FF E +G + I ++ R + + + R+ D + L + Sbjct: 61 ICHDADFFVIQGGYESTDGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVM 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 118 VSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQLVEEELF 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E MA+ G + R I + + + ++ LT +D A Sbjct: 178 LIWEEMMAQAGEVVFRKREAFIQEFIPIFQSFYSFISQDKERVGLT------YDSH--AR 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ L + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 230 NASLSEVLKESRMRDQIMGYSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 289 FDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDCI 344 >gi|15836608|ref|NP_297296.1| recombination protein F [Xylella fastidiosa 9a5c] gi|13959493|sp|Q9PHE1|RECF_XYLFA RecName: Full=DNA replication and repair protein recF gi|9104763|gb|AAF82816.1|AE003855_3 DNA replication and repair RecF protein [Xylella fastidiosa 9a5c] Length = 364 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 150/331 (45%), Gaps = 31/331 (9%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 F+G+NG GKT++LEA+ + GR FR + R GS E +E D Sbjct: 28 FIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGLIRHGS----------ENLEIFVDWQET 77 Query: 92 --LETRDDRSVRCLQINDVVIRVVDELNKHLR--------ISWLVPSMDRIFSGLSMERR 141 + R R+ + + R+ + HL I++ S I S + RR Sbjct: 78 DLINARRRRAGLSHYGQEWIGRLDGQKIMHLATLCAALAVITFESSSYQLINSNAEL-RR 136 Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 RFLD +F ++P + +++ RN LL + + + + + +++E+G ++ R Sbjct: 137 RFLDWGLFHVEPDFLDLWRCYTHVLKQRNSLLKQKE-ELAMLEAWDQKLSEVGEQLTFRR 195 Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + + L ++ + + P++K+ F G + LF R+ D Sbjct: 196 FQYLERLKQRVIPLISRIT-PNLKIHGLNFNHGWRRHELPLID-----ALFISRERDYQY 249 Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320 T +GPHRSD + +I H S G+ K++ + LA A+ + G PIL LD Sbjct: 250 GYTSLGPHRSDWTPQFA--SIPGVHVLSRGQGKLITLMCLLAQAQDFFDQRGEWPILALD 307 Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 ++++ LD+ + + ++ +I +Q+ +TGT+ Sbjct: 308 DLASELDQKHQWRVLEMLAEIPAQVLITGTE 338 >gi|157144342|ref|YP_001451661.1| recombination protein F [Citrobacter koseri ATCC BAA-895] gi|166220702|sp|A8ACL2|RECF_CITK8 RecName: Full=DNA replication and repair protein recF gi|157081547|gb|ABV11225.1| hypothetical protein CKO_00046 [Citrobacter koseri ATCC BAA-895] Length = 357 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 154/361 (42%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 SF R++G E I + + D VR I+ V EL + + + P Sbjct: 66 ESFV-LHGRLQGEERETAIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F + + +RL++ RN L + + + Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLRPWDKE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E ++ + + Q + P L+ + F G ++ +YA+ Sbjct: 181 LIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------DYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D M T GPH++D + D A S G+ K+++ + LA ++ Sbjct: 233 VLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D ++ +K + Sbjct: 292 ESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSKMFTVE 351 Query: 369 N 369 Sbjct: 352 K 352 >gi|6969272|gb|AAF33693.1| putative recF [Mycobacterium avium subsp. paratuberculosis] Length = 385 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 85/340 (25%), Positives = 149/340 (43%), Gaps = 29/340 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + R Sbjct: 3 VRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST +G E ++ LE R+ + ++N +R E+ LR Sbjct: 63 AGADRAVVSTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G ERRR+LD + P D+++++R R LL Sbjct: 118 APEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRSDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---L 232 G D+ ++++AE G ++ AR++++N L+ + E + P + + G+ L Sbjct: 178 GALDT--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSL 234 Query: 233 DGKFDQSFCALKEEYAKKLFDG-----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 A +Y + R + L+GPHR DL + + + + Sbjct: 235 GAAASAEVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLEL-WLGEQVAKGFA 293 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 S GE + + + LA L+ P+LLLD++ A LD Sbjct: 294 SHGESWSLALSLRLAAYELLRADES-DPVLLLDDVFAELD 332 >gi|126657418|ref|ZP_01728577.1| recombination protein F [Cyanothece sp. CCY0110] gi|126621405|gb|EAZ92117.1| recombination protein F [Cyanothece sp. CCY0110] Length = 380 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 95/385 (24%), Positives = 187/385 (48%), Gaps = 39/385 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ FRNY L +Q TI +G+N GK+N+LEA+ L+ + R D+ Sbjct: 3 LKNIHLYTFRNYEEQSLNLQSQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDLIL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + VE G +++ I L + RS L +N + L +HL + Sbjct: 63 EGERT-GQILGTVERKYGESELGITLRYQGRRS---LTLNH------ENLRRHLEFLGHI 112 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---- 174 +++ FS L ++ RR +LD ++ ++P + + + +++R RN LL Sbjct: 113 NAVE--FSCLDLDLVRGSPDTRRSWLDTLLIQLEPVYASIIHQYYKILRQRNALLKVIRK 170 Query: 175 ---EGYFDSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 E S+ + I + Q+AE G ++ R +I ++ L ++ Q+ + + Sbjct: 171 TIEEQENPSNLSAEISQLKVWDQQLAEAGTRVTRRRYRVIERITPLAQKWHQEISSGTER 230 Query: 226 LSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 L + + K + + +++ + K+ R + T++GPHR D+ + ++ Sbjct: 231 LEINYLPNIKIENEQPQQVQQAFLDKIEQRRMAEQQLATTVVGPHRDDVEFN-INQTPAK 289 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 ++GS G+Q+ +++ I LA +LI + G P+LLLD++ A LD +++N L ++ Q Sbjct: 290 SYGSQGQQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDPNRQNKLLEVIQG-RFQ 348 Query: 345 IFMTGTDKSVFDS--LNETAKFMRI 367 +T T FD+ LN +++ M++ Sbjct: 349 TLITTTYLHSFDAQWLN-SSQIMKV 372 >gi|293393723|ref|ZP_06638031.1| recombination protein F [Serratia odorifera DSM 4582] gi|291423767|gb|EFE96988.1| recombination protein F [Serratia odorifera DSM 4582] Length = 362 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 155/362 (42%), Gaps = 16/362 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEA+ L GR FR V R Sbjct: 6 LLIKDFRNIESADLAPAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHDQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 P + RV+ G E + + + D VR I+ V EL + L + + P Sbjct: 66 PEYV-LHGRVDSGSERELSVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQLITPE 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 + +G RR FLD F +P + +RL++ RN L + + + + Sbjct: 122 GFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRAWDQ 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ L +I+ R +A+++ I + P LS + F G +S +Y Sbjct: 181 ELIPLAERISDWRAAYSDAIAADITATC-AQFLPEFALSFS-FQRGWDKES------DYG 232 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + L + D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 ELLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLT 291 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 +G + L+D+ ++ LD +R L + +Q+F++ + + V D + E K R+ Sbjct: 292 RQSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMVGEKGKMFRV 351 Query: 368 SN 369 Sbjct: 352 EQ 353 >gi|332882412|ref|ZP_08450040.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679796|gb|EGJ52765.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 365 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 90/379 (23%), Positives = 166/379 (43%), Gaps = 37/379 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ ++N A L F + F+G NG GKTN+L+A+ FLS + + + R Sbjct: 3 LKKISVLNYKNIAQAELAFSPKMNCFIGHNGEGKTNLLDAVYFLSFCKSATNSVDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC------LQINDVVIRVVDELNKHL 120 G F ++G + E+ + V C + + L++H+ Sbjct: 63 HGEDFFM--------LQG----EYEHESGEPEEVYCGLKRKQKKRFKRNKKEYKRLSEHI 110 Query: 121 RISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEG 176 + +V P+ + SG S ERRRF+D ++ D + ++ + + ++ RN LL E Sbjct: 111 GLVPVVLVSPADADLISGGSEERRRFMDMVIVQYDHEYLDALVRYNKALQQRNVLLKQEE 170 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 D + E MA+ G KI R + + ++ + + + L G+ Sbjct: 171 EPDEALMGLWEEMMAQEGEKIYEKRKAYVEEFIPVFQDFYARISRGKEHVGLRYISHGQR 230 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + ++ + AK D + +L G H+ DL + + I GS G+ K L Sbjct: 231 GELLDVIRRDRAK--------DRIMGYSLHGVHKDDLEMTLGEFPIK-REGSQGQNKTYL 281 Query: 297 VGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV 354 + + LA + T + P+LLLD+I LD D+ + ++V+ + QIF+T T++ Sbjct: 282 IALKLAQFDFLRRTGSRTTPLLLLDDIFDKLDADRVEQIVKLVSGEQFGQIFVTDTNREH 341 Query: 355 FDSL----NETAKFMRISN 369 D + +E K + N Sbjct: 342 LDRILEKTDEDYKLFYVEN 360 >gi|260774983|ref|ZP_05883883.1| DNA recombination and repair protein RecF [Vibrio coralliilyticus ATCC BAA-450] gi|260609073|gb|EEX35232.1| DNA recombination and repair protein RecF [Vibrio coralliilyticus ATCC BAA-450] Length = 360 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 82/365 (22%), Positives = 157/365 (43%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEA+ L GR F+ + V + Sbjct: 6 LIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRVIQNDC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF + F+RL + RN LL Y + S+ Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R + ++ E Q P ++ L + D + A+ E Sbjct: 179 -DQEMARLAENISQWRATYVEQMTEKATEICQT-FLPEFEIQLKYYRGWDKDTPYQAILE 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 237 NNFER-------DQALGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG + L+D+ ++ LD +R L + + G+Q+F++ T+ + D L+E + Sbjct: 289 HLTEMTGKQCVYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDENGRM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|319897497|ref|YP_004135694.1| DNA replication and repair protein recf [Haemophilus influenzae F3031] gi|317433003|emb|CBY81374.1| DNA replication and repair protein RecF [Haemophilus influenzae F3031] Length = 359 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 84/367 (22%), Positives = 161/367 (43%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPGFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L +++ R E AL I + Q P ++++++ F Q + Sbjct: 176 IWDVELTKLAHQVSQWRTEYAEALRPEIEQTCQL-FLPELEINVS------FHQGWEK-N 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|237711116|ref|ZP_04541597.1| DNA replication and repair protein RecF [Bacteroides sp. 9_1_42FAA] gi|229454960|gb|EEO60681.1| DNA replication and repair protein RecF [Bacteroides sp. 9_1_42FAA] Length = 371 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 37/366 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N L F + F+G NG+GKTN+L+A+ +LS + + R Sbjct: 3 LKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E +G ++ L+ R + + + + L+ H+ L Sbjct: 63 -HEGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKRNK------KEYSRLSDHIGFIPL 115 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 V P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E D Sbjct: 116 VMVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLDG 234 E MA G + R E I + S I + +K N + ++ G L Sbjct: 176 LMLVWEEMMAFAGEVVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAMNGNL-- 233 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 +KE RK D + +L G H+ DL++ D I GS G+ K Sbjct: 234 -----LDIIKE--------SRKRDRIMGYSLRGIHKDDLVMQLGDFPIK-REGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK 352 L+ + LA + T + P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLIALKLAQFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNR 339 Query: 353 SVFDSL 358 D + Sbjct: 340 DHLDKI 345 >gi|291615641|ref|YP_003518383.1| RecF [Pantoea ananatis LMG 20103] gi|291150671|gb|ADD75255.1| RecF [Pantoea ananatis LMG 20103] gi|327395907|dbj|BAK13329.1| DNA replication and repair protein RecF [Pantoea ananatis AJ13355] Length = 361 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 88/361 (24%), Positives = 151/361 (41%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEQADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R+EG E + + + VR I+ V EL + L + + P Sbjct: 66 AAFV-LHGRLEGQEREFSVGLSKNRAGESKVR---IDGSDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F P + RL++ RN L + S + + Sbjct: 122 FTLLNGGPKYRRAYVDWGCFHNTPGFFNAWSNLRRLLKQRNAALRQ-VTRYSQIRPWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R + A+S+ I+ + P L + F G +S +YA+ Sbjct: 181 LVPLAEQISQWRADYSAAISAEIVTTC-AQFLPEFDLRFS-FQRGWDKES------DYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + + S G+ K+++ + LA ++ Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD+ +R L + +Q+F++ + + V D +E K R+ Sbjct: 292 QSGRRCVYLIDDFASELDDSRRRLLAERLKATQAQVFVSAISSEHVIDMTDEKGKMFRVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|41406101|ref|NP_958937.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis K-10] gi|45645207|sp|Q9L7L5|RECF_MYCPA RecName: Full=DNA replication and repair protein recF gi|41394449|gb|AAS02320.1| RecF [Mycobacterium avium subsp. paratuberculosis K-10] Length = 385 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 85/340 (25%), Positives = 149/340 (43%), Gaps = 29/340 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + R Sbjct: 3 VRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST +G E ++ LE R+ + ++N +R E+ LR Sbjct: 63 AGADRAVVSTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G ERRR+LD + P D+++++R R LL Sbjct: 118 APEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---L 232 G D+ ++++AE G ++ AR++++N L+ + E + P + + G+ L Sbjct: 178 GALDT--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSL 234 Query: 233 DGKFDQSFCALKEEYAKKLFDG-----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 A +Y + R + L+GPHR DL + + + + Sbjct: 235 GAAASAEVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLEL-WLGEQVAKGFA 293 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 S GE + + + LA L+ P+LLLD++ A LD Sbjct: 294 SHGESWSLALSLRLAAFELLRADES-DPVLLLDDVFAELD 332 >gi|254282777|ref|ZP_04957745.1| DNA replication and repair protein RecF [gamma proteobacterium NOR51-B] gi|219678980|gb|EED35329.1| DNA replication and repair protein RecF [gamma proteobacterium NOR51-B] Length = 357 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 98/355 (27%), Positives = 156/355 (43%), Gaps = 33/355 (9%) Query: 7 IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 IK L I RN AS+ L A + G NG GKT++LEAI L+ GR FR S V Sbjct: 2 IKQLAIEGVRNLDASVSLGSSA--NLLYGRNGSGKTSVLEAIHLLAVGRSFRANSAKPVI 59 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 T EG + + ++ D SV +IN + + L + L + + Sbjct: 60 GFDRDHCLVTATVTEGNR---NQQLGIQRSKDGSV-IARINGEAVTSLAMLAEVLPVVVM 115 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAID----PRHRRRMIDFERLMRGRNRLLTEGYF--D 179 + + G RRRF+D VF ++ P RR F+R +R RN L G D Sbjct: 116 DSGIVSLIDGQPEGRRRFIDASVFHVEQSFLPAWRR----FQRALRQRNAGLRRGTLEGD 171 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 +W ++A G K+ R ++AL + + + + ++L F G +D++ Sbjct: 172 EAW----RREVASAGQKLTEMRSVALDALQARFVASAEALSDDIAGMALV-FRAG-WDKT 225 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLV 297 L E + L + D + T +GPHR+D L++D A + S G+ K+ Sbjct: 226 -VGLLEALERSL----ESDRLQGFTHVGPHRADIKLLIDGRPAAEVM---SRGQLKLAAT 277 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + LA LI+ + P+ L+D++ A LD A+ + G Q+ T D+ Sbjct: 278 ALKLAQGGLIAQQSRSTPVYLVDDLLAELDSGHSRAVCDQLVAAGGQVVFTAVDR 332 >gi|255320700|ref|ZP_05361877.1| DNA replication, recombination and repair protein [Acinetobacter radioresistens SK82] gi|262380669|ref|ZP_06073822.1| recombinational DNA repair ATPase [Acinetobacter radioresistens SH164] gi|255302316|gb|EET81556.1| DNA replication, recombination and repair protein [Acinetobacter radioresistens SK82] gi|262297617|gb|EEY85533.1| recombinational DNA repair ATPase [Acinetobacter radioresistens SH164] Length = 360 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 89/363 (24%), Positives = 166/363 (45%), Gaps = 34/363 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I LNI RN +++ L +F G NG GKT+ILEAI L+ GR FR + Sbjct: 3 ITRLNIERVRNLSAVALSELQPFNVFYGANGSGKTSILEAIHLLATGRSFRTYIPKHYIQ 62 Query: 67 IGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G+ F + GM+ + + +++N + +L K L + Sbjct: 63 SGASDTIVFAQSATEKIGMQKMLS-----------GEQIIKVNGDTVATQGQLAKMLALQ 111 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 ++ P I + RR+ LD ++F ++P + + R ++ RN LL Sbjct: 112 YIDPLSTDIIDHGAKPRRQLLDWLMFHVEPEFYQTWQYYSRALKQRNSLLKS-------R 164 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFPHIKLSLTGFLDGKFDQSF 240 ++ + K+ + E+++A S +ME + K++ + L LD + F Sbjct: 165 QTLSVDELDPWNKMLASYGELLHAQRSQVMEQWKIYFKQDLSQLLPDLEIELD--YVSGF 222 Query: 241 CALKEEYAK-KLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVG 298 + + Y L+ + +D R T GPHR+DL + A I S G++K++++ Sbjct: 223 HSEQGLYQDLTLYHQKDLD--RRYTEYGPHRADLRLKTPLGDADNIL--SRGQKKLLIMA 278 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357 + L+ ++ + + ++LLD+++A LD + L ++ +GSQ+F+T + KSV Sbjct: 279 LKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFITTLEHKSVQQH 337 Query: 358 LNE 360 L++ Sbjct: 338 LHD 340 >gi|284928773|ref|YP_003421295.1| DNA replication and repair protein RecF [cyanobacterium UCYN-A] gi|284809232|gb|ADB94937.1| DNA replication and repair protein RecF [cyanobacterium UCYN-A] Length = 380 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 97/382 (25%), Positives = 183/382 (47%), Gaps = 54/382 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ FRNY + +Q TI +G+N GK+N+LEAI L+ + R D+ Sbjct: 3 LKNIHLYTFRNYYKQSVNLQSQKTILLGNNAQGKSNLLEAIELLATLKSHRTRRDQDLIL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G S T A VE + G +++SI L + RS L +N ++L++HL + Sbjct: 63 EGEKSSQIT-ANVERIYGQSELSITLRSSGKRS---LMLNH------EKLHRHLEFLGHI 112 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---E 175 +++ FS L ++ RR +LD ++ ++P + + + +++R RN LL + Sbjct: 113 NAVE--FSCLDLDLVRGSPEIRRIWLDTLLIQLEPIYAHIINQYHKILRQRNSLLKIIRK 170 Query: 176 GYFDS----------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + DS S + Q+AE G ++ R +I L L ++ + Sbjct: 171 QFNDSKKSDNFMTTISQLKLWDEQLAEAGTRVTRRRNRVIQRLVPLAQKWHK-------- 222 Query: 226 LSLTG---FLDGKF-------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 S++G LD + +++ +++ + +K+ ++ T++GPHR D+ Sbjct: 223 -SISGKAELLDINYLSNITIENENHQTIQQRFLEKIEQRSIIERNLATTVVGPHRDDVEF 281 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 + +K +GS G+Q+ +++ I LA +LI + G P+LLLD++ A LD +++ L Sbjct: 282 N-INKNQAKFYGSQGQQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDHNRQKQLL 340 Query: 336 RIVTDIGSQIFMTGTDKSVFDS 357 + Q +T T FD+ Sbjct: 341 EAIQG-KFQTLITTTHLPTFDT 361 >gi|148358142|ref|YP_001249349.1| DNA recombination/repair protein ATPase RecF [Legionella pneumophila str. Corby] gi|148279915|gb|ABQ54003.1| DNA recombination and repair protein ATPase RecF [Legionella pneumophila str. Corby] Length = 353 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 85/349 (24%), Positives = 151/349 (43%), Gaps = 41/349 (11%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I FRN AS L+ + G NG GKT++LEA+ LS FR A + G Sbjct: 8 IHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVAPIISYGQNQ 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + FA + IS++ D ++ +N+ +L L + + + Sbjct: 68 -LNVFAHTYDE---STISVQKSITDGTQIK---LNNQFCCTTSQLAYALPCQVIYSDIFQ 120 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIE 187 I RR LD +F + + + D++R++ RN LL T +F W + Sbjct: 121 IIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHF-IPW----D 175 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FLDGKFDQSFC 241 Q+++L +++ AR + +++ K F + LT + G ++ Sbjct: 176 QQLSQLANQLDKAR-------NDYFLQWQPK--FYQVLSDLTNISCTIEYYKGWDRKNAG 226 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIF 300 EE +K FD D T GPH++DLI++ + + H S G+QK++L+ + Sbjct: 227 QNMEELLQKSFDS---DKNKLYTQYGPHQADLIINI--EQYRVKHTLSRGQQKIILIALK 281 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 LA +L+ + L+D+++A LD+ + L + +T Q +T Sbjct: 282 LAQGQLLDKDC----LYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITN 326 >gi|309973509|gb|ADO96710.1| DNA replication and repair protein RecF [Haemophilus influenzae R2846] Length = 359 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 162/367 (44%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ F Q + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + + + + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCVLRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEIQVENK 345 Query: 363 KFMRISN 369 K + N Sbjct: 346 KMFSVHN 352 >gi|294627436|ref|ZP_06706020.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598257|gb|EFF42410.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 368 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 8/342 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + + G+ Sbjct: 6 LSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 EG + + + R +++ + + L L + P Sbjct: 66 NDLEVFVEWKEGGGAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + SG RRRFLD +F ++P + R ++ RN LL +G + + + Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQGA-QPRLLDAWDNE 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +AE G + R+ + L ++ V P + LS F G + + +L A Sbjct: 185 LAESGENLTSRRMRYLERLQDRMVP-VADAIAPALGLSALTFAPG-WKRHEVSL----AD 238 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L R+ D + T GPHR+D + + A S G+ K+ + LA A + Sbjct: 239 ALLLARERDRQNGYTSQGPHRADWMPSFLALPGKDAL-SRGQAKLTALACLLAQAEDFAF 297 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 G P++ LD++ + LD + + + + +Q+ +T T+ Sbjct: 298 ERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATE 339 >gi|265750702|ref|ZP_06086765.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_33FAA] gi|263237598|gb|EEZ23048.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_33FAA] Length = 371 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 37/366 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N L F + F+G NG+GKTN+L+A+ +LS + + R Sbjct: 3 LKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E +G ++ L+ R + + + + L+ H+ L Sbjct: 63 -HEGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKRNK------KEYSRLSDHIGFIPL 115 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 V P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E D Sbjct: 116 VMVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLDG 234 E MA G + R E I + S I + +K N + ++ G L Sbjct: 176 LMLVWEEMMAFAGEIVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAMNGNL-- 233 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 +KE RK D + +L G H+ DL++ D I GS G+ K Sbjct: 234 -----LDIIKE--------SRKRDRIMGYSLRGIHKDDLVMQLGDFPIK-REGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK 352 L+ + LA + T + P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLIALKLAQFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNR 339 Query: 353 SVFDSL 358 D + Sbjct: 340 DHLDKI 345 >gi|331693902|ref|YP_004330141.1| DNA replication and repair protein recF [Pseudonocardia dioxanivorans CB1190] gi|326948591|gb|AEA22288.1| DNA replication and repair protein recF [Pseudonocardia dioxanivorans CB1190] Length = 380 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 88/330 (26%), Positives = 150/330 (45%), Gaps = 16/330 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR++ L D T+ VG NG GKTN++EA+ +++ R A+ A + Sbjct: 1 MHLRRLAVTDFRSWEQADLDLDPGVTVLVGSNGEGKTNLVEAVGYIATLGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G ++ A V G + +++++LE ++ R V R D L LR Sbjct: 61 IRRG-----ASRAVVRGVVVNQRRELAVELEITAGKANRARVNRSPVPRTRDVLGI-LRT 114 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDS 180 P + G ERRRFLD ++ A PR+ D+ER++R R+ LL D Sbjct: 115 VLFAPEDLALVRGDPGERRRFLDDLLVARYPRYAGVRADYERVLRQRSALLKTARAGGDL 174 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFD 237 + +A G ++ R++++ L+ V + P L L+G+ Sbjct: 175 RTLDVWDGHLARHGSELLAGRLDLVAGLAPPATAAFADVAPSSDP-AALQYRSSLEGELP 233 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 AL+E + L R+ + L+GPHR DL + D + S GE + + Sbjct: 234 ADAAALEELLLEALGRVRRQEVDRGVCLVGPHRDDLEIRLGDGPAK-GYASHGESWALAL 292 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLD 327 + L RL+ P+L+LD++ A LD Sbjct: 293 ALRLGSYRLL-QADDVEPVLILDDVFAELD 321 >gi|119491644|ref|ZP_01623516.1| recombination protein F [Lyngbya sp. PCC 8106] gi|119453373|gb|EAW34537.1| recombination protein F [Lyngbya sp. PCC 8106] Length = 390 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 99/382 (25%), Positives = 176/382 (46%), Gaps = 45/382 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ +FRNY ++ FDA TI VGDN GK+N+LEA+ LS + R + ++ Sbjct: 3 LKTLHLKQFRNYRDQKVAFDAPKTILVGDNAQGKSNLLEAVELLSTLKSHRVSRDRELI- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + +E G ++ + L ++ R+V L + R +D L+ + + Sbjct: 62 LDTQDNGQITGNLERETGHIELGLILRSKGRRTV--LLNRQSLRRQLDFLSILNVVQF-- 117 Query: 127 PSMDRIFSGLSMERRR-FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----- 180 S+D S ERRR ++DR++ I+P + + + +++R RN LL + S Sbjct: 118 SSLDLELVRGSPERRRSWIDRLLVQIEPVYAYILQQYYQVLRQRNALLKKARSQSHSPGE 177 Query: 181 ---------SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENF 221 S + +AQ+A G ++ R ++ L L E +Q Sbjct: 178 EQPQKQILNSELAVWDAQLAVSGARVIRRRDRVLERLIPLAQTWHHLISGSTENLQLTYQ 237 Query: 222 PHIKL------SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 P++++ L+ Q+F +K+ + TL+GPHR D+I Sbjct: 238 PNVQVIAAENTRLSALSPQDVQQAFL-------QKISTRTLAEHQQGTTLVGPHRDDIIF 290 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 ++ +GS+G+Q+ +++ + LA +LI G P+LLLD++ A LD ++N L Sbjct: 291 T-INQTPARQYGSSGQQRTLVLALKLAELQLIEAVIGEPPLLLLDDVLAELDLSRQNQLL 349 Query: 336 RIVTDIGSQIFMTGTDKSVFDS 357 + D Q +T T FDS Sbjct: 350 EAIGD-RFQTLITTTHLGAFDS 370 >gi|20806546|ref|NP_621717.1| recombinational DNA repair ATPase [Thermoanaerobacter tengcongensis MB4] gi|254478930|ref|ZP_05092292.1| RecF/RecN/SMC N terminal domain, putative [Carboxydibrachium pacificum DSM 12653] gi|51316490|sp|Q8RDL3|RECF_THETN RecName: Full=DNA replication and repair protein recF gi|20514983|gb|AAM23321.1| Recombinational DNA repair ATPase [Thermoanaerobacter tengcongensis MB4] gi|214035152|gb|EEB75864.1| RecF/RecN/SMC N terminal domain, putative [Carboxydibrachium pacificum DSM 12653] Length = 364 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 161/353 (45%), Gaps = 25/353 (7%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRN +L F + G N GK+N+LEAI LS GR FR + +++ + Sbjct: 8 VDNFRNLKKQKLEFCEGVNLIYGLNAQGKSNLLEAIRLLSMGRSFRGSKMSELVKFDEEY 67 Query: 72 FFSTFARVEGMEGLADI-SIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F+ V G+ AD K+E + +++N ++ E+ H P Sbjct: 68 FY-----VRGLVRSADFYEKKIEFGYKVNGNKVIKVNGNKLKSTGEILGHFLTVIFSPED 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE-- 187 I RR++LD + ID + ++ + + + RN LL + + +E Sbjct: 123 IEIIKEGPSRRRKYLDACISVIDKNYFFDLLQYNKTLSNRNSLLKKIKEEGKGEDLLEIF 182 Query: 188 -AQMAELGVKI----NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++AE G +I N ++ N++S +ME + E I L+ G + + Sbjct: 183 DEKLAEYGARIIKVRNNYLEKLKNSMSKFLME-ISNEKLEIIYLNSAGVKEVHEEN---L 238 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++E+ +L +D T +GPHR D ++++ D + + S G+++ + + Sbjct: 239 IREKLKNRLTKSLTLDLKYLSTQVGPHREDFKILINGYDSRV---YSSQGQKRTAALCLK 295 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 L+ ++ TG P+LLLD++ + LD++++ + + + G Q F+T T KS Sbjct: 296 LSELEILEEETGEKPVLLLDDVMSELDDNRKKYILKKLE--GFQSFITHTSKS 346 >gi|288573677|ref|ZP_06392034.1| DNA replication and repair protein RecF [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569418|gb|EFC90975.1| DNA replication and repair protein RecF [Dethiosulfovibrio peptidovorans DSM 11002] Length = 354 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 42/345 (12%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYADVTRIGSPS 71 FRN + R+ +D + + +G NG GKTNILE++ L+ P + R++ + S Sbjct: 11 FRNLETGRIKWDRKLNLLIGPNGAGKTNILESLHILTGWGPFKSLRKSPLVNWNSDESRG 70 Query: 72 FF-STFARVEGMEGLADISIKLETRDDRSVRC--LQINDVVIRVVDELNKHLRISWL--V 126 F TF EG ++ I+ +++C + N IR R+ L + Sbjct: 71 FLEGTF------EGEDNVLIQSSVTSRCAMKCDGKRSNCASIR--------FRVPALAFL 116 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + G RRRFLD + + P + ++ ++ R +R + LL+EG + S+ Sbjct: 117 PGDLALIEGGPSVRRRFLDVLCALLYPVYALKLTEYRRAVRHKRALLSEGR-STELIDSV 175 Query: 187 EAQMAEL----GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-LDGKFDQSFC 241 A MAE K ++A + + S L+ ++ + LS G L G Sbjct: 176 MAPMAEWIWTCREKASLAVTMGLESFSDLLPGPIE------LALSRGGIGLAGNNPIG-- 227 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 Y + + R+ + S R L+GPHR DL +D + + S G+++ + + + Sbjct: 228 -----YIEGVRSRRRAEIGSGRPLVGPHRDDLTIDASGMEAS-SRFSRGQRRRTSLAMVM 281 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 A + +PILLLDE+++ LD+ R + G QIF Sbjct: 282 AAGWAVERKLRRSPILLLDEVASELDQSGREITVETLVSSGWQIF 326 >gi|161506638|ref|YP_001576586.1| recombination protein F [Lactobacillus helveticus DPC 4571] gi|172048333|sp|A8YW44|RECF_LACH4 RecName: Full=DNA replication and repair protein recF gi|160347627|gb|ABX26301.1| DNA repair and genetic recombination protein [Lactobacillus helveticus DPC 4571] Length = 375 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 85/347 (24%), Positives = 149/347 (42%), Gaps = 14/347 (4%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRN L + FD IF+G N GKTN+LEAI FL+ R R S D IG Sbjct: 8 VQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNS--DKELIG--- 62 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F + + G + + + L + + + IN V + + L P Sbjct: 63 FGGEYTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAILFSPEDLE 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187 + RRRF+D+ I+ + + +++ +N L + D + + Sbjct: 123 LIKSAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQVFLDVLS 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 Q+A + ++ R + + LS + + KL++ ++ ++E Y Sbjct: 183 DQLAGIAAEVIFRRFKFLRYLSHYASDVYAHISLGGEKLAIAYHPSVSTIEADDTVEEIY 242 Query: 248 AKKL--FDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 K L F+ K M + T GPHR D+ K + + S G+Q+ + + + LA Sbjct: 243 QKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIALSVKLAEI 301 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 302 QLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYIHG-KTQTFITTTD 347 >gi|188535560|ref|YP_001909357.1| recombination protein F [Erwinia tasmaniensis Et1/99] gi|226737797|sp|B2VCE1|RECF_ERWT9 RecName: Full=DNA replication and repair protein recF gi|188030602|emb|CAO98497.1| DNA replication and repair protein RecF [Erwinia tasmaniensis Et1/99] Length = 361 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 88/361 (24%), Positives = 150/361 (41%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R+ E + + D VR I+ V EL + L + + P Sbjct: 66 DAFV-LHGRIATAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F +P + RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +A L +I+ R A+++ I + P +LS + F G +S YA+ Sbjct: 181 LAPLAEQISQWRAAYSEAIAADISATC-AQFLPEFQLSFS-FQRGWDKES------HYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + + S G+ K+++ + LA ++ Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 G + L+D+ ++ LDE +R+ L + +Q+F++ + VFD +E K + Sbjct: 292 QNGQRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMTDEKGKMFHVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|317494669|ref|ZP_07953081.1| DNA replication and repair protein RecF [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917271|gb|EFV38618.1| DNA replication and repair protein RecF [Enterobacteriaceae bacterium 9_2_54FAA] Length = 358 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 91/362 (25%), Positives = 153/362 (42%), Gaps = 16/362 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LTIRDFRNIESADLAPAEGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 65 Query: 70 PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 F R++ G E + + D VR I+ V EL + L + + P Sbjct: 66 NEFV-LHGRIDTGAERELSVGLSKSRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPE 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 + +G RR FLD F DP + +RL++ RN L + S + Sbjct: 122 GFTLLNGGPKFRRAFLDWGCFHSDPGFFVAWSNLKRLLKQRNAALRQ-VTRYSQLRPWDQ 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++ L +I+ R + A++ I + P L+ + F G +S +Y Sbjct: 181 ELIPLAERISALRAQYSAAIAEDISATC-AQFLPEFALTFS-FQRGWDKES------DYV 232 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + L + D T +GPH++D + + S G+ K+++ + LA ++ Sbjct: 233 ELLERQFERDRALTYTAVGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEYLT 291 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367 +G + L+D+ ++ LD +R L + G+Q+F++ + + V D ++E K R+ Sbjct: 292 RHSGRRCLYLIDDFASELDTGRRRLLADRLKATGAQVFVSAVSAEQVSDMVDEKGKMFRV 351 Query: 368 SN 369 Sbjct: 352 EQ 353 >gi|237727469|ref|ZP_04557950.1| DNA replication and repair protein recF [Bacteroides sp. D4] gi|229434325|gb|EEO44402.1| DNA replication and repair protein recF [Bacteroides dorei 5_1_36/D4] Length = 371 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 96/372 (25%), Positives = 163/372 (43%), Gaps = 49/372 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N L F + F+G NG+GKTN+L+A+ +LS F +++ + Sbjct: 3 LKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLS----FCKSA---INP 55 Query: 67 IGSPS------FFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 I S + FF E +G ++ L+ R + + + + L+ H Sbjct: 56 IDSQNIRHEGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKRNK------KEYSRLSDH 109 Query: 120 LRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TE 175 + LV P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E Sbjct: 110 IGFIPLVMVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSE 169 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSL 228 D E MA G + R E I + S I + +K N + ++ Sbjct: 170 QEPDEELMLVWEEMMAFAGEVVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAM 229 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 G L +KE RK D + +L G H+ DL++ D I GS Sbjct: 230 NGNL-------LDIIKE--------SRKRDRIMGYSLRGIHKDDLVMQLGDFPIK-REGS 273 Query: 289 TGEQKVVLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIF 346 G+ K L+ + LA + T + P+LLLD+I LD + + ++V D QIF Sbjct: 274 QGQNKTYLIALKLAQFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIF 333 Query: 347 MTGTDKSVFDSL 358 +T T++ D + Sbjct: 334 ITDTNRDHLDKI 345 >gi|310765872|gb|ADP10822.1| DNA replication and repair protein recF [Erwinia sp. Ejp617] Length = 397 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 88/361 (24%), Positives = 149/361 (41%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 42 LLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 101 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R+ E + D VR I+ V EL + L + + P Sbjct: 102 DAFV-LHGRIRAAEREISAGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 157 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F +P + RL++ RN L + + + + Sbjct: 158 FTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 216 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +A L +I+ R A+++ I + P +LS + F G +S +YA Sbjct: 217 LAPLAEQISQWRAAYSKAIAADINATC-AQFLPEFQLSFS-FQRGWDKES------DYAG 268 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + + S G+ K+++ + LA ++ Sbjct: 269 LLERNFERDRAFTYTASGPHKADFRIRAQGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 327 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 G + L+D+ ++ LDE +R+ L + +Q+F++ + VFD +E K + Sbjct: 328 QNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMTDEKGKMFHVE 387 Query: 369 N 369 Sbjct: 388 Q 388 >gi|60680428|ref|YP_210572.1| putative DNA replication and repair protein [Bacteroides fragilis NCTC 9343] gi|81316502|sp|Q5LGW6|RECF_BACFN RecName: Full=DNA replication and repair protein recF gi|60491862|emb|CAH06620.1| putative DNA replication and repair protein [Bacteroides fragilis NCTC 9343] Length = 370 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 155/358 (43%), Gaps = 22/358 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + R Sbjct: 3 LKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E M+G +I ++ R + + + + L+ H+ L Sbjct: 63 -HEQDFFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKRNK------KEYSRLSDHIGFIPL 115 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 V P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E MA+ G + R I+ + + + ++ LT Sbjct: 176 LFLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLT--------YESH 227 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A K + L + R D + +L G H+ +L + D I GS G+ K LV + L Sbjct: 228 ARKASLLEVLKESRVRDKIMGYSLRGIHKDELNMLLGDFPIK-REGSQGQNKTYLVALKL 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358 A + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 287 AQFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRI 344 >gi|302346673|ref|YP_003814971.1| DNA replication and repair protein RecF [Prevotella melaninogenica ATCC 25845] gi|302150770|gb|ADK97031.1| DNA replication and repair protein RecF [Prevotella melaninogenica ATCC 25845] Length = 368 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 90/387 (23%), Positives = 165/387 (42%), Gaps = 63/387 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L+I ++N + L A+ F+G NG GKTN+L+A+ +LS + ++V Sbjct: 1 MQLEKLSIINYKNIQAATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFF-------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 R + F T + G+ S K R+ + + L+ Sbjct: 61 MRHDADYFVLEGDYCTDTGEHEQVYCGMKRGSKKHFKRNKKEYK-------------RLS 107 Query: 118 KHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173 +H+ + L+ P+ + G S ERR+ +D ++ D + + + + ++ RN LL Sbjct: 108 QHIGLVPLIFVSPADATLIEGGSEERRKLMDVVISQYDTPYIESLSRYNKALQQRNSLLK 167 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 E D++ +E QMAE G + R + L+ + Sbjct: 168 QEEEPDATLLELLEMQMAEHGEAVYKKRAAFVEELTPVFQ-------------------- 207 Query: 234 GKFDQSFCALKE----EYAKKLFDGRKMDSMSR---------RTLIGPHRSDLIVDYCDK 280 + Q+ C+ +E EY G +D + R +L G H+ DL++ Sbjct: 208 -RIYQTICSEREQVSLEYVSHCQRGDLLDVIQRDRAKDRIMGYSLHGTHKDDLVMKLGGY 266 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT 339 + GS G+ K ++ + LA + T G P+LLLD+I LD + + R+V+ Sbjct: 267 PMK-REGSQGQNKTYVLALKLAQFDFLRRTAGNNTPLLLLDDIFDKLDSSRVEQIVRLVS 325 Query: 340 --DIGSQIFMTGTDKSVFDSLNETAKF 364 D G QIF+T T++ D + + + F Sbjct: 326 GDDFG-QIFITDTNRDHLDKILQGSGF 351 >gi|312193900|ref|YP_004013961.1| DNA replication and repair protein RecF [Frankia sp. EuI1c] gi|311225236|gb|ADP78091.1| DNA replication and repair protein RecF [Frankia sp. EuI1c] Length = 374 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 95/359 (26%), Positives = 157/359 (43%), Gaps = 26/359 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FR+Y +L L A FVG NG GKTN+LEA+ +++ R + A + Sbjct: 1 MHVTHLQLVDFRSYPALELTLPAGVVTFVGANGQGKTNLLEAVGYVATLGSHRVSGDAPL 60 Query: 65 TRIGSPSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ V G LA+I I + R ++ +++N + EL L + Sbjct: 61 IREGAERAVIRSRIVNGDRAALAEIEI-VTGRANK----VRLNRRPLSRPRELLGLLSVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + G ERRRFLD ++ A PR + D+ER++R R LL + D Sbjct: 116 LFAPEDLAMVKGDPGERRRFLDELLVARTPRLAAVIADYERVLRQRTTLL-RAHGDLRTL 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIM------------EYVQKENFPHIKLSLTGF 231 S + +A G ++ AR+ +++ L + + +K + + Sbjct: 175 ESWDEALARHGAELLAARLALVDDLRPRVQAAYAAVAGTADEDATEKGVGVDYRCGVELP 234 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 D AL EE A+ R + TL+GPHR +L + + + S GE Sbjct: 235 EGADRDAIAAALIEELARV----RPREIERGVTLVGPHRDELALAVGGRPAR-GYASHGE 289 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + + LA L+ AP+LLLD++ A LD +R L +V Q+ +T Sbjct: 290 SWSLALALRLASYELL-EADDRAPVLLLDDVFAELDAHRRRRLAELVAP-AEQVLITAA 346 >gi|308188763|ref|YP_003932894.1| DNA replication and repair protein recF [Pantoea vagans C9-1] gi|308059273|gb|ADO11445.1| DNA replication and repair protein recF [Pantoea vagans C9-1] Length = 361 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 149/361 (41%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEQADLQLAPGFNFLVGVNGSGKTSVLEAIHTLGHGRSFRSLQAGRVIRHDE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R+E E + + D VR I+ V EL + L + + P Sbjct: 66 AAFV-LHGRLESKEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F P + RL++ RN L + S + + Sbjct: 122 FSLLNGGPKYRRAYVDWGCFHNTPGFFNAWNNMRRLLKQRNAALRQ-VSRYSQIRPWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E A+S+ I + P +L + F G +S +YA+ Sbjct: 181 LVPLAEQISQWRAEYSAAISAEITATC-AQFLPEFELRFS-FQRGWDKES------DYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + + S G+ K+++ + LA +++ Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTS 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAKFMRIS 368 +G I L+D+ ++ LDE +R L + +Q+F++ V D +E K R+ Sbjct: 292 QSGRRCIYLIDDFASELDESRRRLLADRLKATQAQVFVSAISAGHVIDMTDEKGKMFRVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|315187337|gb|EFU21093.1| DNA replication and repair protein RecF [Spirochaeta thermophila DSM 6578] Length = 363 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 99/351 (28%), Positives = 157/351 (44%), Gaps = 33/351 (9%) Query: 9 FLNISE--FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYADVT 65 FL I FRN + + A +FVG+NG GKTNILE + L G FR R + +T Sbjct: 2 FLTIGSEGFRNIVTGTIDVGAPVVVFVGENGQGKTNILELVYLLCYGVSFRTRQNTVLIT 61 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS-W 124 R S R E EG + I +E + + + +N+ I EL IS Sbjct: 62 RGRSSCRIHGEFRTE--EGYI-LPILVEI--GPTSKEIFLNEKKIANRKEL---FSISPC 113 Query: 125 LVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 +V + D I G + R+F+++++ +DP + + R++ RN L E D Sbjct: 114 IVFAHDDIQFVVGSPLLHRQFMNQILTLVDPLFLDSLRTYNRILTSRNEALKEARED--L 171 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+A++ +I + R M++A SS++ ++ GF FD S+ Sbjct: 172 LEVYDDQLADIAHQITVKRERMMDAFSSILRSTCEE----------FGFSGNVFDVSYRP 221 Query: 243 L-----KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 KEE + L R D M T GPHR L+ + + STGE +++ + Sbjct: 222 SLRGDGKEELMRILRSERTQDLMVGFTRRGPHRDRLVFTMNGHPVP-DYASTGEIRLLSL 280 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + +A + +TG PILL D++ LD KR + ++ G Q F T Sbjct: 281 LLRVAQTTYVRESTGKTPILLFDDVLLELDPLKRRRVVEMIPH-GRQSFFT 330 >gi|255007766|ref|ZP_05279892.1| putative DNA replication and repair protein [Bacteroides fragilis 3_1_12] gi|313145469|ref|ZP_07807662.1| DNA replication and repair protein recF [Bacteroides fragilis 3_1_12] gi|313134236|gb|EFR51596.1| DNA replication and repair protein recF [Bacteroides fragilis 3_1_12] Length = 370 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 94/373 (25%), Positives = 158/373 (42%), Gaps = 26/373 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + R Sbjct: 3 LKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E M+G +I ++ R + + + + L+ H+ L Sbjct: 63 -HEQDFFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKRNK------KEYSRLSDHIGFIPL 115 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 V P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E MA+ G + R I+ + + + ++ LT + Sbjct: 176 LFLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHARGASLLE 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 LKE R D + +L G H+ +L + D I GS G+ K LV + L Sbjct: 236 VLKE--------SRVRDKIMGYSLRGIHKDELNMLLGDFPIK-REGSQGQNKTYLVALKL 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD---- 356 A + T P+LLLD+I LD + + ++V D QIF+T T++ D Sbjct: 287 AQFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILY 346 Query: 357 SLNETAKFMRISN 369 + K R+ N Sbjct: 347 KVGSDYKMFRVEN 359 >gi|53712250|ref|YP_098242.1| DNA replication and repair protein RecF [Bacteroides fragilis YCH46] gi|253563714|ref|ZP_04841171.1| DNA replication and repair protein recF [Bacteroides sp. 3_2_5] gi|265762438|ref|ZP_06091006.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_16] gi|81690735|sp|Q64XR8|RECF_BACFR RecName: Full=DNA replication and repair protein recF gi|52215115|dbj|BAD47708.1| DNA replication and repair protein RecF [Bacteroides fragilis YCH46] gi|251947490|gb|EES87772.1| DNA replication and repair protein recF [Bacteroides sp. 3_2_5] gi|263255046|gb|EEZ26392.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_16] Length = 370 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 154/358 (43%), Gaps = 22/358 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + R Sbjct: 3 LKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E M+G +I ++ R + + + + L+ H+ L Sbjct: 63 -HEQDFFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKRNK------KEYSRLSDHIGFIPL 115 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 V P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E MA+ G + R I+ + + + ++ LT + Sbjct: 176 LFLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHARNASLLE 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 LKE R D + +L G H+ +L + D I GS G+ K LV + L Sbjct: 236 VLKE--------SRVRDKIMGYSLRGIHKDELNMLLGDFPIK-REGSQGQNKTYLVALKL 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358 A + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 287 AQFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRI 344 >gi|315657691|ref|ZP_07910573.1| recombination protein F [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492163|gb|EFU81772.1| recombination protein F [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 413 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 101/391 (25%), Positives = 168/391 (42%), Gaps = 38/391 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT--RI 67 L + FR+Y + L F A +FVG NG GKTN+LEA+++L+ R + A + I Sbjct: 6 LALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGLIFREI 65 Query: 68 G----SPSFFSTF---ARVEGMEGLADIS-----IKLETRDDRSVRCLQINDVVIRVVDE 115 G SP+ ARV L D +++E R+ R + IN +R Sbjct: 66 GDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNVRPRSL 124 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L HL P ++ G + RR FLDR+ + P + ++ ++ R R L + Sbjct: 125 LG-HLSTVLFAPEDLQLVQGDPVTRRTFLDRIAIQLRPTLVGALGEYTKIARQRGAYLKD 183 Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFP-HIKLSL 228 D S + + + V++ R +I+ L+ + Y + P + L+ Sbjct: 184 VAKRRAPIDEIQLSIWDDALVPVAVEVMRERARVIDQLAQFLPSVYARIAGHPAPVGLTY 243 Query: 229 TGFLDGKFDQSFCALKEEYA---------KKLFDGRKMDSMSRR-TLIGPHRSDLIVDYC 278 + + S +E YA ++ R D R L+GPHR +L + + Sbjct: 244 ADSVTKTLELSADEQREMYANPELLSSVFRQALAQRHADEARRGVNLVGPHRDELEL-HL 302 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 + S GE + + LA L+ P+LLLD++ A LDE +R AL + Sbjct: 303 NGLPVKGFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAALLWAI 362 Query: 339 TDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 D Q+F+T T + ++L+ A F R++ Sbjct: 363 -DQADQVFITSATGTEIPEALH--AAFYRVT 390 >gi|72160410|ref|YP_288067.1| recombination protein F [Thermobifida fusca YX] gi|97181072|sp|Q47U20|RECF_THEFY RecName: Full=DNA replication and repair protein recF gi|71914142|gb|AAZ54044.1| DNA replication and repair protein RecF [Thermobifida fusca YX] Length = 377 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 22/360 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L ++++R+Y + L + + F+G NG GKTN++EAI +++ R A A + Sbjct: 1 MHVSHLQLADYRSYEAAYLELEPGVSTFIGPNGQGKTNLVEAIGYVATHSSHRVAHDAPL 60 Query: 65 TRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ A V G L I+LE R+ R R+ D L L Sbjct: 61 VRRGAQRAVIRAAVVRHGQTAL----IELEINPGRANRARLNRSPNTRMRDVLGI-LHTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 P + G ERRRFLD ++ A PR+ D+ER+++ RN LL Sbjct: 116 LFAPEDLALVKGDPGERRRFLDELLTARAPRYAGVRSDYERVLKQRNALLKSAAAQNLHH 175 Query: 176 -GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGF 231 G D + +A++G ++ AR+ ++ L L + + +SL Sbjct: 176 RGGRDLPTLDVWDEHLAQIGAELLAARLALVAELQPLAAKAYGELTATQDPISLRYRCSA 235 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTG 290 D + D + E + + D + R +L+GPHR DL + + + + S G Sbjct: 236 TDEELDTTNRPQLVEILRAALLRARPDELRRGVSLVGPHRDDLQL-WLNDLPAKGYASQG 294 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 E + + LA L+ G P+LLLD++ A LD ++R L V Q+ +T Sbjct: 295 ESWSYALALRLAGFELL-RADGDDPVLLLDDVFAELDAERRRRLASYVR-TAEQVLVTAA 352 >gi|325922761|ref|ZP_08184495.1| DNA replication and repair protein RecF [Xanthomonas gardneri ATCC 19865] gi|325546757|gb|EGD17877.1| DNA replication and repair protein RecF [Xanthomonas gardneri ATCC 19865] Length = 368 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 80/344 (23%), Positives = 147/344 (42%), Gaps = 12/344 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + + G+ Sbjct: 6 LSIHRLRRFQTVELYPASSLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 E ++ S + R +++ + + L L + P Sbjct: 66 DDLEVFVEWRERSGETSERSRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + SG RRRFLD +F ++P + R ++ RN LL +G + + + Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQGA-QPRMLDAWDHE 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +AE G + R+ ++ L ++ V P + LS F G + + +L A Sbjct: 185 LAESGESLTSRRLRYLDRLQERLIP-VATAIAPSLGLSALTFAPG-WKRHEVSL----AD 238 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIV--DYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L R+ D + T GPHR+D D T+ S G+ K+ + LA A Sbjct: 239 ALLLARERDRQNGYTSQGPHRADWTPAFDALPGKDTL---SRGQAKLTALACLLAQAEDF 295 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 ++ G P++ LD++ + LD + + + + +Q+ +T T+ Sbjct: 296 AHERGEWPVIALDDLGSELDRHHQARVLQRLASAPAQVLITATE 339 >gi|297193293|ref|ZP_06910691.1| recombination protein F [Streptomyces pristinaespiralis ATCC 25486] gi|297151726|gb|EDY62300.2| recombination protein F [Streptomyces pristinaespiralis ATCC 25486] Length = 286 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 13/216 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 13 MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLASHRVSSDAPL 72 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R +G ++LE R+ R +R D L +R Sbjct: 73 VRMGA---DRAVIRAAVTQGERSQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 128 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD +V A PR D+ER+++ RN LL Sbjct: 129 FAPEDLSLVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGG 188 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 D S + +A G ++ R+++I AL L Sbjct: 189 RGMDLSTLDVWDQHLARAGAEVTAQRLDLIAALQPL 224 >gi|82523805|emb|CAI78548.1| DNA replication and repair protein RecF [uncultured Chloroflexi bacterium] Length = 409 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 94/396 (23%), Positives = 162/396 (40%), Gaps = 57/396 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+++ FRN+ L L + VGDN GKT++LEA+ +L+ F +S + Sbjct: 3 LTHLSLTNFRNFTRLDLDVPKGSILLVGDNAQGKTSLLEAVYYLATLVSFHASSDRQLIN 62 Query: 67 IGSPSFFSTFARVEGMEGLADIS-----IKLETR---DDRSVRCLQINDVVIR------- 111 AR+ +AD S LE R + L N +R Sbjct: 63 FIEARQPLAVARI-----VADFSRGTNRHHLEIRLIQESNGQTSLNGNSTHVRKEVLLDG 117 Query: 112 -------VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 V + N L +P M + G ERRR+L+ + + + + ++ + Sbjct: 118 VKCKASTAVGQFNAVL----FLPQMLGVIEGSPEERRRYLNLALAQVIAHYPAALSEYTK 173 Query: 165 LMRGRN---RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--- 218 + RN +LL E D + + Q+ G ++ AR+ + L L + ++ Sbjct: 174 ALSQRNALLKLLNERQGDPAQLDYWDEQIVSNGAQLIYARIHAVQELERLAVRTHRELTR 233 Query: 219 -------------ENFPHIKLSLTGFLDGKFDQSFCAL---KEEYAKKLFDGRKMDSMSR 262 + FP LD D+S L ++ +A+ L R + Sbjct: 234 GAEVLRLNYQPSYDPFPVQPGQYALPLDSPVDRSGLTLEGIQQGFAENLNKLRPEEIARG 293 Query: 263 RTLIGPHRSDLIVDYCDKAITIA-HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321 T IGPHR +L + I + +GS G+ + ++ + +A + + +G P+LLLDE Sbjct: 294 VTTIGPHRDEL--RFLANGIDLGTYGSRGQVRTAMLSLKIAEVGWMHHKSGQWPVLLLDE 351 Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + A LD ++R L +T Q +T TD +F S Sbjct: 352 VLAELDANRRQDLLERLTQ-SEQALLTTTDLDLFSS 386 >gi|21240777|ref|NP_640359.1| recombination protein F [Xanthomonas axonopodis pv. citri str. 306] gi|25453249|sp|Q8PRG0|RECF_XANAC RecName: Full=DNA replication and repair protein recF gi|21106041|gb|AAM34895.1| DNA replication and repair RecF protein [Xanthomonas axonopodis pv. citri str. 306] Length = 368 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 8/342 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + + G+ Sbjct: 6 LSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 EG + + + R +++ + + L L + P Sbjct: 66 NDLEVFVEWKEGGGAAVERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + SG RRRFLD +F ++P + R ++ RN LL +G + + + Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQGA-QPRMLDAWDNE 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +AE G + R+ + L ++ V P + LS F G + + +L A Sbjct: 185 LAESGETLTSRRMRYLERLQDRLVP-VADAIAPALGLSALTFAPG-WKRHEVSL----AD 238 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L R+ D + T GPHR+D + + A S G+ K+ + LA A + Sbjct: 239 ALLLARERDRQNGYTSQGPHRADWMPSFHALPGKDAL-SRGQAKLTALACLLAQAEDFAF 297 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 G P++ LD++ + LD + + + + +Q+ +T T+ Sbjct: 298 ERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATE 339 >gi|311277335|ref|YP_003939566.1| DNA replication and repair protein RecF [Enterobacter cloacae SCF1] gi|308746530|gb|ADO46282.1| DNA replication and repair protein RecF [Enterobacter cloacae SCF1] Length = 357 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 91/362 (25%), Positives = 155/362 (42%), Gaps = 21/362 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 SF R++G I + + D VR I+ V EL + + + P Sbjct: 66 ESFV-LHGRLQGETRETAIGLTKDKLGDSKVR---IDGTDGHKVAELALLMPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 + +G RR FLD F + + +RL++ RN R +T W Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E ++ + + ++ P L+ + F G ++ + Sbjct: 178 DRELIPLAEQISAWRAEYSAGIADDMADTC-RQFLPEFSLTFS-FQRGWEKET------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 230 YAEVLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 Query: 366 RI 367 + Sbjct: 349 TV 350 >gi|86738727|ref|YP_479127.1| recombination protein F [Frankia sp. CcI3] gi|86565589|gb|ABD09398.1| DNA replication and repair protein RecF [Frankia sp. CcI3] Length = 399 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 92/381 (24%), Positives = 160/381 (41%), Gaps = 42/381 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y +L L FVG NG GKTN++EAIS+++ R A A + Sbjct: 1 MHLTHLSLVDFRSYPALDLTLGPGVATFVGGNGQGKTNVIEAISYVATLASHRVAGDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ S AR+ + G +++E ++ R ++N + ++ L Sbjct: 61 VRDGA-SRAVIRARI--VRGDRAALVEIEIVPGKANRA-RLNRAPVARPRDIVGLLCTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEG 176 P + G +RR+FLD ++ A PR + D++R+++ R+ LL G Sbjct: 117 FAPEDLALVKGDPAQRRQFLDELLIARTPRMAAVLADYDRVLKQRSTLLRTAGTARRAGG 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINAL---------------SSLIMEYVQKENF 221 D + +A G ++ AR+ +++AL S+ ++Y Sbjct: 177 QGDLRTLDVWDGYLAAHGAEVLAARLALVDALRPAVAAAYEAVAGAESATALDYRSSVTL 236 Query: 222 PHI---------KLSLTGFLDGKFDQSF---CALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 P I G+ D + L E L R + TL+GPH Sbjct: 237 PDILHASGPPGPPGQPEQPGAGRPDPAAPDRTMLAEAIRADLEAARPREVERGMTLVGPH 296 Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 R DL++ + + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 297 RDDLLLS-INGLPARGYASHGESWSLALALKLASFDLL-RADDREPVLLLDDVFAELDTR 354 Query: 330 KRNALFRIVTDIGSQIFMTGT 350 +R L +V Q+ +T Sbjct: 355 RRGRLAELVAS-AEQVLVTAA 374 >gi|262371171|ref|ZP_06064492.1| recombinational DNA repair ATPase [Acinetobacter johnsonii SH046] gi|262313901|gb|EEY94947.1| recombinational DNA repair ATPase [Acinetobacter johnsonii SH046] Length = 360 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 164/377 (43%), Gaps = 33/377 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASY 61 ++I LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR Y Sbjct: 1 MQITRLNIERVRNLRTVALHGLQPFNVFYGQNGSGKTSILEAIHLLATGRSFRTHIPKHY 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + F + + GM+ L + +++N I +L K L Sbjct: 61 IQTDTQDAIVFAQSSSEKIGMQKLLS-----------GEQLIKVNGDNIATQGQLAKILP 109 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDS 180 + + P I + RR+ LD ++F ++P + R ++ RN LL T Sbjct: 110 LQLIDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYHAWQYYSRALKQRNSLLKTRRNLSL 169 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + + G ++ RV ++ + + K P I++ L + G F Sbjct: 170 ADLEPWNKMLGDYGEMLHSQRVSIVEQWKGFFEQDL-KHLLPDIEVQLE-YSPG-FHTEV 226 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC--DKAITIAHGSTGEQKVVLVG 298 L + L + D R T GPH++DL + D + + S G++K++++ Sbjct: 227 GLLHD-----LQSHHQKDLERRYTEYGPHKADLRLKTSLGDADVVL---SRGQKKLLIIA 278 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + L+ ++ + ++LLD+++A LD + L ++ +GSQ+F+T + ++S+ Sbjct: 279 LKLSQIAML-HACNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFITTLE---YESV 334 Query: 359 NETAKFMRISNHQALCI 375 + IS +Q C+ Sbjct: 335 KNHLHDLSIS-YQLFCV 350 >gi|260912771|ref|ZP_05919257.1| recombination protein F [Pasteurella dagmatis ATCC 43325] gi|260633149|gb|EEX51314.1| recombination protein F [Pasteurella dagmatis ATCC 43325] Length = 358 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 88/366 (24%), Positives = 159/366 (43%), Gaps = 15/366 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I FRN ++ L FD VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLIENFRNLTAVDLEFDRGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F A+++ + ++ + R S+ +++N + +L L + Sbjct: 61 ISYEQPHFI-LHAKIQEQNHQWSVGLQ-KLRQGNSL--VKVNGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F ++ RL++ RN L + S Sbjct: 117 ITPEGLILLNGGPSYRRAFLDWGLFHHHNHFHLAWVNLNRLLKQRNAALQQVTHYSE-LE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L +++ R E AL I E + P +++S++ F Q + Sbjct: 176 IWDRELVKLAQQVSEWRKEYAEALRPEI-EQTCRLFLPELEISVS------FHQGW-EKD 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 228 RDYAELLATNFERDRAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + + L+D+ ++ LDE KR L + GSQ+F+T +S + E + Sbjct: 287 EHLMKQKQRHCLFLIDDFASELDEHKRALLAERLKQSGSQVFVTAITESQLKQMQPEKHR 346 Query: 364 FMRISN 369 R+ N Sbjct: 347 TFRVEN 352 >gi|304398066|ref|ZP_07379941.1| DNA replication and repair protein RecF [Pantoea sp. aB] gi|304354352|gb|EFM18724.1| DNA replication and repair protein RecF [Pantoea sp. aB] Length = 361 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 90/361 (24%), Positives = 148/361 (40%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEQADLQLAPGFNFLVGANGSGKTSVLEAIHTLGHGRSFRSLQAGRVIRHDE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R+E E + + D VR I+ V EL + L + + P Sbjct: 66 AAFV-LHGRLENAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F P + RL++ RN L + S + + Sbjct: 122 FSLLNGGPKYRRAYVDWGCFHNTPGFFNAWNNMRRLLKQRNAALRQ-VSRYSQIRPWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R E A+S+ I + P +L + F G +S +Y + Sbjct: 181 LVPLAEQISQWRAEYSAAISAEITATC-SQFLPEFELRFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + + S G+ K+++ + LA +++ Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTS 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAKFMRIS 368 +G I L+D+ ++ LDE +R L + +Q+F++ V D +E K R+ Sbjct: 292 QSGRRCIYLIDDFASELDESRRRLLADRLKATQAQVFVSAISAGHVIDMTDEKGKMFRVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|254515867|ref|ZP_05127927.1| DNA replication, recombinaison and repair protein [gamma proteobacterium NOR5-3] gi|219675589|gb|EED31955.1| DNA replication, recombinaison and repair protein [gamma proteobacterium NOR5-3] Length = 370 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 92/355 (25%), Positives = 149/355 (41%), Gaps = 30/355 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 LNI RN L + H + G NG GKT++LEA L R FR + G Sbjct: 7 LNIHHLRNLTEASLGPLSLHNVIYGINGSGKTSLLEAAHILGTARSFRAGGAKSLITHGE 66 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 ++ R G + ++ + S+R + R V +L L + + Sbjct: 67 QTYVVQGNRESPGGGCVSLGVQRQKGGGMSLR---VAGEPSRSVSQLADELPLLLINADS 123 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPR---HRRRMIDFERLMRGRNRLLTEGYFDSS----W 182 + G RRRF+D VF ++ HRRR F+R + RN LL G D+S W Sbjct: 124 FDLLVGEPANRRRFMDWGVFHVEHNLRDHRRR---FQRALTQRNHLLRRGKLDASELEVW 180 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + A AEL ++ R + AL + E + E P I G +D + + + A Sbjct: 181 TRDL-AVHAEL---VSAGRDRFLAALKE-VFEPLVNELAPEI-----GPVDLAYRRGWDA 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIF 300 YA L D T GP R+D+ V A T+ S G+QK+++ + Sbjct: 231 -SLGYADALQRSLASDQEQGFTQSGPQRADIRVTVGGYSAADTL---SRGQQKLLICALK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 LA ++++ G + L+D++ + LD ++ + R + + Q +T +S Sbjct: 287 LAQGQILAGQRGGV-LYLIDDLPSELDAERCERVCRALAAMRVQTLITCVSRSAI 340 >gi|183603361|ref|ZP_02711713.2| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC1087-00] gi|183569922|gb|EDT90450.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC1087-00] Length = 327 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/337 (22%), Positives = 147/337 (43%), Gaps = 22/337 (6%) Query: 43 ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102 +LEAI FL+ R R + ++ + G+ SI LE + R Sbjct: 1 MLEAIYFLALTRSHRTRTDKNLIHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRV 55 Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 ++N + + + H+ + P ++ G RR+F+D + I P + + ++ Sbjct: 56 TKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNY 115 Query: 163 ERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 +++ RN L D ++ S ++ Q+ + G ++ R++ I L S + +K++F Sbjct: 116 NHILKQRNTYLKSVQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHF 171 Query: 222 P------HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 + +S ++ Q+ L E + L R D + T +GPHR D + Sbjct: 172 ELSNQIEELSISYQSSVNITDKQN---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--I 226 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 + + + GS G+ + +++ I LA L+ + T +PILLLD++ + LD ++ L Sbjct: 227 SFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLL 286 Query: 336 RIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 ++ Q F+T T +L E I N +A Sbjct: 287 ETISQ-SIQTFITTTSLDHLQNLPENLSIFTIQNGKA 322 >gi|313765023|gb|EFS36387.1| recombination protein F [Propionibacterium acnes HL013PA1] gi|313815420|gb|EFS53134.1| recombination protein F [Propionibacterium acnes HL059PA1] gi|314916216|gb|EFS80047.1| recombination protein F [Propionibacterium acnes HL005PA4] gi|314917483|gb|EFS81314.1| recombination protein F [Propionibacterium acnes HL050PA1] gi|314921819|gb|EFS85650.1| recombination protein F [Propionibacterium acnes HL050PA3] gi|314930916|gb|EFS94747.1| recombination protein F [Propionibacterium acnes HL067PA1] gi|314955288|gb|EFS99693.1| recombination protein F [Propionibacterium acnes HL027PA1] gi|314959161|gb|EFT03263.1| recombination protein F [Propionibacterium acnes HL002PA1] gi|315099339|gb|EFT71315.1| recombination protein F [Propionibacterium acnes HL059PA2] gi|315102320|gb|EFT74296.1| recombination protein F [Propionibacterium acnes HL046PA1] gi|327454255|gb|EGF00910.1| recombination protein F [Propionibacterium acnes HL087PA3] gi|327456315|gb|EGF02970.1| recombination protein F [Propionibacterium acnes HL083PA2] gi|328756013|gb|EGF69629.1| recombination protein F [Propionibacterium acnes HL087PA1] gi|328758856|gb|EGF72472.1| recombination protein F [Propionibacterium acnes HL025PA2] Length = 401 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 91/370 (24%), Positives = 167/370 (45%), Gaps = 28/370 (7%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175 P+ + G +RR FLD +V PR D+ R+++ RN LL + Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYARVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231 G + + ++A +G ++ AR++ ++A+ L +E P L+ + Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLT-SAAYREIAPVNDLTTASYKSTI 244 Query: 232 -LDGKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDK 280 L+G + + S ++E A + D R+ D + R TL+GP R D+I+ + + Sbjct: 245 DLEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362 Query: 341 IGSQIFMTGT 350 Q+ +T Sbjct: 363 -ADQVLVTAA 371 >gi|17230866|ref|NP_487414.1| recombination protein F [Nostoc sp. PCC 7120] gi|20978593|sp|Q8YRR9|RECF_ANASP RecName: Full=DNA replication and repair protein recF gi|17132469|dbj|BAB75073.1| DNA repair and genetic recombination protein [Nostoc sp. PCC 7120] Length = 376 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 176/376 (46%), Gaps = 50/376 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ FRNY ++ F A TI VG+N GK+N+LEA+ L+ R R A D + Sbjct: 3 LKTLHLRHFRNYYDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMARDRDFVQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P A +E G++D+S+ L R+ R R + +N + L + + ++ Sbjct: 63 EEEP-VAQINATLERDTGVSDLSLILR-RNGR--RTVALNG------EPLRRQMDFLGVL 112 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 ++ FS L +E RR +LD ++ ++P + + + +++R RN L + Sbjct: 113 NAVQ--FSSLDLELVRGSPEVRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAYL-KKLQ 169 Query: 179 DSSWCSS------IEAQMAELGVKI-------NIARVEMINALSSLI---MEYVQKENFP 222 DS+ + +AQ+ G K+ + A + I E +Q P Sbjct: 170 DSALTTQDSALAIWDAQLVTTGTKVIRRRDRALARLAPLATAWHTSISGSTEVLQINYTP 229 Query: 223 HIKLSLTGFLDGKFDQSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 +++ L + Q+F + L++ +++ G TL+GPHR ++ + ++ Sbjct: 230 NVQ--LVKNQPEEVQQAFLSQLQQRAVPEIYRG--------TTLVGPHRDEVELT-INQT 278 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 +GS G+Q+ +++ + LA +LI P+LLLD++ A LD ++N L + D Sbjct: 279 PARQYGSQGQQRTLVLALKLAELQLIEEVVKEPPLLLLDDVLAELDPSRQNQLLDTIQD- 337 Query: 342 GSQIFMTGTDKSVFDS 357 Q +T T S FD+ Sbjct: 338 RFQTLITTTHLSSFDA 353 >gi|323703939|ref|ZP_08115569.1| DNA replication and repair protein RecF [Desulfotomaculum nigrificans DSM 574] gi|323531097|gb|EGB21006.1| DNA replication and repair protein RecF [Desulfotomaculum nigrificans DSM 574] Length = 367 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 159/377 (42%), Gaps = 31/377 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + ++ FRNYA + I G N GKTN+LE+I + G FR DV Sbjct: 1 MRVENITLNNFRNYAKVSFKPHPSINIITGHNAQGKTNLLESIYYSLKGHSFRADRDRDV 60 Query: 65 TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + +T V + L IK + R L +V +D+ + Sbjct: 61 IKWQQETAVINTEIMVSSRQFLIQWLIKASGKKFR----LNGTEVPRAELDQFG----VV 112 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDS 180 P + G ERRRFLD V + P + + R++ RN LL E + Sbjct: 113 LFCPEDLYLVKGSPQERRRFLDLEVGPLHPGYSHACRQYARVLSQRNILLKEIRGRQANP 172 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLTG 230 + Q+ G ++ R++++ L + +E +Q + + L L+ Sbjct: 173 DILDIWDEQLYRHGARVIFLRLQVLKKLIPVARSIHLELTNGLEQLQAKYLSSLVLDLS- 231 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 F + + Q F + AK++ RK++ +TL+GPHR D+ + + A GS G Sbjct: 232 FSEEQIYQVFS----QAAKQI---RKLEIDRCQTLLGPHRDDISLA-INGAEAKTFGSQG 283 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ V + + L+ L G P+LLLD++ LD +++ L + D T Sbjct: 284 QQRTVTLSLKLSVLELWYREFGHYPVLLLDDVLFELDHNRQTMLLDKLQDKVQTFITTSF 343 Query: 351 DKSVFDSLNETAKFMRI 367 + + + + + R+ Sbjct: 344 PGGIDNQIKQVGQVWRV 360 >gi|1262354|emb|CAA94710.1| RecF [Mycobacterium leprae] Length = 385 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 160/362 (44%), Gaps = 32/362 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + +FR++ + L + T+F G NG GKTN++EA+ + + R + + R Sbjct: 3 VRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPLIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST EG E +I LE R+ R ++N ++R + E+ LR Sbjct: 63 AGTIRAIVSTIVVNEGRE----CAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------E 175 P + G RRR+LD + P D+++++R R LL + Sbjct: 118 APEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRLALLKSLAAARYRSDQ 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLD 233 G D+ + ++AE G ++ AR++++N L+ + + Q +S LD Sbjct: 178 GVLDT--LDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQLLAPGSRTASISYRASLD 235 Query: 234 -------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 G D++ L+ + L R ++ L+GPHR +L + D+ Sbjct: 236 IGGIAGVGSSDRAL--LQADLLAGLSTRRNVELERGICLVGPHRDELELRLGDQPAK-GF 292 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + + + LA L+ G P+LLLD++ A LD + AL V + Q+ Sbjct: 293 ASHGESWSLAIALRLAAYELL-RADGNEPVLLLDDVFAELDAARCRALA-TVAESAEQVL 350 Query: 347 MT 348 +T Sbjct: 351 VT 352 >gi|288802280|ref|ZP_06407720.1| RecF protein [Prevotella melaninogenica D18] gi|288335247|gb|EFC73682.1| RecF protein [Prevotella melaninogenica D18] Length = 368 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 91/387 (23%), Positives = 167/387 (43%), Gaps = 63/387 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L+I ++N + L A+ F+G NG GKTN+L+A+ +LS + ++V Sbjct: 1 MQLEKLSIINYKNIQAATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSF-----FSTFA--RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 R + F + T A + G+ S K R+ + + L+ Sbjct: 61 MRHDADYFVLEGDYCTDAGEHEQVYCGMKRGSKKHFKRNKKEYK-------------RLS 107 Query: 118 KHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173 +H+ + L+ P+ + G S ERR+ +D ++ D + + + + ++ RN LL Sbjct: 108 QHIGLVPLIFVSPADATLIEGGSEERRKLMDVVISQYDTPYIESLSRYNKALQQRNSLLK 167 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 E D++ +E QMAE G + R + L+ + Sbjct: 168 QEEEPDATLLELLEMQMAEHGEAVYKKRAAFVEELTPVFQ-------------------- 207 Query: 234 GKFDQSFCALKE----EYAKKLFDGRKMDSMSR---------RTLIGPHRSDLIVDYCDK 280 + Q+ C+ +E EY G +D + R +L G H+ DL++ Sbjct: 208 -RIYQTICSEREQVSLEYVSHCQRGDLLDVIQRDRAKDRIMGYSLHGTHKDDLVMKLGGY 266 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT 339 + GS G+ K ++ + LA + T G P+LLLD+I LD + + R+V+ Sbjct: 267 PMK-REGSQGQNKTYVLALKLAQFDFLRRTAGNNTPLLLLDDIFDKLDSSRVEQIVRLVS 325 Query: 340 --DIGSQIFMTGTDKSVFDSLNETAKF 364 D G QIF+T T++ D + + + F Sbjct: 326 GDDFG-QIFITDTNRDHLDKILQGSGF 351 >gi|148271182|ref|YP_001220743.1| recombination protein F [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166220703|sp|A5CLT6|RECF_CLAM3 RecName: Full=DNA replication and repair protein recF gi|147829112|emb|CAN00009.1| DNA replication and repair protein RecF [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 404 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 94/380 (24%), Positives = 163/380 (42%), Gaps = 53/380 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ +FRNY + T+FVG NG GKTN++EA+ FLS R ++ + R Sbjct: 3 VRHLSLGDFRNYTRADVALLPGATLFVGSNGQGKTNLVEALGFLSTLGSHRVSTDQALIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWL 125 G+ S A + + A +++E + +RS Q+N + EL ++ Sbjct: 63 QGAES-----AVIRALLQHAGRELRVEVQINRSAANRAQVNSTPTK-PRELPRYFSSVLF 116 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + G RRR LD+++ PR + D++R ++ RN LL Sbjct: 117 APEDLALVRGDPSGRRRLLDQLLVLRTPRLAGVLSDYDRALKQRNTLLKSARARGMKADQ 176 Query: 186 I------EAQMAELGVKINIARVEMINALSSLI----MEYVQKENFPHIKLSL------- 228 + + ++ +G +I AR ++ AL + + ++ P + L Sbjct: 177 LGTLDIWDERLVAIGSQIIAARGALVEALQPELARAYLAVAGSDHGPSARPELSILADDP 236 Query: 229 --------TGFLD-GKFDQS-------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 TG D G+F +S A+ ++L G TL+GPHR D Sbjct: 237 GEDDIADETGARDGGRFTRSDDVVPVFTAAIARMRPRELERG--------LTLVGPHRDD 288 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI--SNTTGFAPILLLDEISAHLDEDK 330 ++ + + S GE + + LA A L+ + TG P+L+LD++ A LD+ + Sbjct: 289 VLF-RLNGLPAKGYASHGESWSFALALKLASAELLRRDSQTG-DPVLILDDVFAELDQAR 346 Query: 331 RNALFRIVTDIGSQIFMTGT 350 R L VT Q+ +T Sbjct: 347 RGRLAEAVTGF-EQVLITAA 365 >gi|302870735|ref|YP_003839371.1| DNA replication and repair protein RecF [Caldicellulosiruptor obsidiansis OB47] gi|302573594|gb|ADL41385.1| DNA replication and repair protein RecF [Caldicellulosiruptor obsidiansis OB47] Length = 353 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 30/360 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + I FR+Y F + + VG+N GKT++LEA+ F G+ F+ DV Sbjct: 3 IKSIYIENFRSYHQSFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFKS---RDVDL 59 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125 I +F S + ++E + ++ + + DR + + + IND + + EL + + Sbjct: 60 I---NFDSQYFKLEMVAEVSGVEYAVGCYVDRMLEKGIMINDKKVNRLSELITLFKFVFF 116 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + RRRFLD V + P + ++++ + RN L + Y Sbjct: 117 EPDTTELVKRQPKLRRRFLDMEVAKLYPYMTKVYQEYQKALLSRNAFL-KSYDKKDIIDV 175 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA-LK 244 + Q++ LG I R E+I LS + F H+ L+ ++ S A + Sbjct: 176 YDVQLSHLGFLILSKRQEVIKKLSG-----EAQRIFGHV-FENKSLLELEYLPSIAASSE 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EEY +L D T G HR D + D + S G+ K+ V + LA A Sbjct: 230 EEYYTELKRCLIKDLNFGYTTRGVHRDDFEI-LIDGKPALDFASEGQIKLAAVSVVLASA 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-------KSVFDS 357 L P+L+LD++ + LD KR L ++ S F+T + +S+FDS Sbjct: 289 ALYEK-----PVLILDDVFSELDCQKRKNLVMFLSQYQS--FVTSAEDLRSLQSESIFDS 341 >gi|260890885|ref|ZP_05902148.1| RECF protein [Leptotrichia hofstadii F0254] gi|260859438|gb|EEX73938.1| RECF protein [Leptotrichia hofstadii F0254] Length = 324 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/321 (23%), Positives = 142/321 (44%), Gaps = 20/321 (6%) Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF--FSTFARV 79 +L FD + G NG GKT+++EA+ FL+ G+ FR ++ + F + Sbjct: 4 KLKFDRYFNLIYGKNGQGKTSLIEAVHFLATGKSFRTKKVKEIRKYNLNRLIVFGKYRHK 63 Query: 80 EGMEGLADISIKLETRD---DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + E I + + +D DR + IN V + L I +P + G Sbjct: 64 DLSENAIAIDVNEDKKDFYIDRE-KNKYINYVGL---------LNIISFIPEDIELIIGN 113 Query: 137 SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 RR F + + + + +++FE++++ RN+L+ E + E G+ Sbjct: 114 PGVRRNFFNYEISQAKKEYLQSIVNFEKILKVRNKLIKEKKTGEEIYKIYNEKFIEEGLN 173 Query: 197 INIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 I + R E I LS L+ +K EN +KL FL ++ LKE++ Sbjct: 174 IVLNRREFIKKLSILLNLNYRKLFDEN-SELKLKYDCFLGDVEKKTREELKEKFEVLCKR 232 Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313 + + +L+GP + D I + K A+ S GE+K ++ + ++ ++ Sbjct: 233 KSEREKFLGYSLLGPQKDDFIFELNGKNAK-AYSSQGEKKSIIFSLKISEIDILIKEKKE 291 Query: 314 APILLLDEISAHLDEDKRNAL 334 PI ++D+I+++ DE ++ ++ Sbjct: 292 YPIFIMDDIASYFDEVRKKSI 312 >gi|332827263|gb|EGK00033.1| hypothetical protein HMPREF9455_03622 [Dysgonomonas gadei ATCC BAA-286] Length = 368 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 155/358 (43%), Gaps = 29/358 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I ++N L + F+G NG+GKTN+L+AI +LS + I S Sbjct: 6 LSILNYKNIEQAELTLSPKINCFLGSNGMGKTNLLDAIYYLSFSKSHNNP-------IDS 58 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDELNKHLRISWL 125 + + FA ++G + D + S+R Q + + L+ H+ + L Sbjct: 59 QNILHDAEFAVIQGWYEIGDKQEEFFC----SLRRKQKKQFKRNKKEYERLSDHIGLLPL 114 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 V PS + +G S ERR+F+D + D + +I + + ++ RN LL + D + Sbjct: 115 VMVSPSDTELINGGSDERRKFMDLFLSQFDKEYLYSLIRYNKALQQRNALLKVDAPVDDT 174 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+A G I R + I+ + F S ++ K++ F Sbjct: 175 LLGLWDEQLANEGKIIYRKRKDFIDKFIPTF------QKFYDFICSSNEKVELKYESHFE 228 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++ + L R+ D + T G H+ DL + +I GS G+ K +V + L Sbjct: 229 --NPDFPELLKSRRQRDKILGYTTAGIHKDDLDMQMDGYSIKRV-GSQGQNKTYVVALKL 285 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358 A + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 286 AQFDFLHKATETTPVLLLDDIFDKLDSSRVEQIIKLVLDKDFGQIFVTDTNREHLDEI 343 >gi|329957035|ref|ZP_08297603.1| DNA replication and repair protein RecF [Bacteroides clarus YIT 12056] gi|328523792|gb|EGF50884.1| DNA replication and repair protein RecF [Bacteroides clarus YIT 12056] Length = 422 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 152/355 (42%), Gaps = 16/355 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + R Sbjct: 47 LKRISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 106 Query: 67 IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E +G + I ++ R + + + R+ D + L + + Sbjct: 107 -HDADFFVIQGFYEAADGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVMV 162 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184 P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 163 SPADSALINGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSETPVEEELFL 222 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 E MA+ G + R E I + + + K+ LT + LK Sbjct: 223 VWEEMMAQAGEVVFRKREEFIREFIPIFQSFYSFISQDKEKVGLTYDSHARDASLLEVLK 282 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 283 E--------SRTRDQIMGFSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQF 333 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 334 DFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRI 388 >gi|261868625|ref|YP_003256547.1| recombination protein F [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413957|gb|ACX83328.1| DNA replication and repair protein RecF [Aggregatibacter actinomycetemcomitans D11S-1] Length = 358 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 82/345 (23%), Positives = 150/345 (43%), Gaps = 14/345 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN ++ L D VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDQPH-FTLFGQIQEQQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F RL++ RN L + Y S Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVAFYNLWASLNRLLKQRNAALQQTYAYSQ-MK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L +++ R + AL I E + P + +S++ F Q + + Sbjct: 176 IWDMELVKLAEQVSQLRADYALALQPEI-EQTCRLFLPELDISVS------FHQGWEK-E 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + YA+ L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 228 QHYAELLERNFERDRALGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMSALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + I L+D+ ++ LD+ KR L + + GSQ+F+T Sbjct: 287 EHLMRQKQRHCIFLIDDFASELDQTKRRLLAERLQNSGSQVFVTA 331 >gi|193214559|ref|YP_001995758.1| DNA replication and repair protein RecF [Chloroherpeton thalassium ATCC 35110] gi|226737776|sp|B3QWU7|RECF_CHLT3 RecName: Full=DNA replication and repair protein recF gi|193088036|gb|ACF13311.1| DNA replication and repair protein RecF [Chloroherpeton thalassium ATCC 35110] Length = 368 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 90/369 (24%), Positives = 158/369 (42%), Gaps = 23/369 (6%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K+ L+I FR++ ++ L D + I+ G NG GKTN+LEAI + + F S +D Sbjct: 1 MKLFKLSIHGFRSHQDAVFLPHDGINLIY-GKNGTGKTNLLEAIHYTCLTKSFLSTSDSD 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + F E + + + + + V IN + ++ Sbjct: 60 ALHFQAGHFELEAVLQSDSENESKVRVYYSPAEGKHVF---INKTPLESFSKIVGEFPCV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDS 180 L P + G ERRRFLD + + + ++ + R++ RN+LL + F S Sbjct: 117 ALSPYDIALTQGSPQERRRFLDASISQTNKAYLADLLSYRRVLAQRNKLLADMKHRTFSS 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 A ++ L I R+ + L + ++ + P + L+ Sbjct: 177 PELDVWTASLSALAASIIFRRIHFVRDFAQYLENAYADFQSIDETPGLTYKTELSLN--- 233 Query: 237 DQSFCALKEEYAKKL---FDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + SF + E AK++ F+ K D + R TL GPHR DL + ++ + S G+ Sbjct: 234 ENSFS--EAELAKQISEKFEEMKFDELRRGLTLFGPHRDDLAFSINNLSLR-KYASQGQH 290 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFMTGTD 351 K ++ + LA I PI LLD++ + LD + L RI++ S Q F+T T+ Sbjct: 291 KTFVICLKLAQYFYICELLSEKPIFLLDDVFSELDSQRAEELVRILSSKRSGQSFITTTE 350 Query: 352 KSVFDSLNE 360 + F + + Sbjct: 351 RKDFAEVKQ 359 >gi|327312442|ref|YP_004327879.1| DNA replication and repair protein RecF [Prevotella denticola F0289] gi|326946310|gb|AEA22195.1| DNA replication and repair protein RecF [Prevotella denticola F0289] Length = 368 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 91/382 (23%), Positives = 161/382 (42%), Gaps = 53/382 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L A+ F+G NG GKTN+L+A+ +LS + ++V Sbjct: 1 MQLDRLSIINYKNIQTATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDE 115 R + F +EG +T + V C + N R + + Sbjct: 61 MRHDADFFV--------LEG----DYTTDTGEQEQVYCGMKRGAKKHFKRNKKEYRRLSQ 108 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174 L + ++ P+ + G S ERRR +D ++ D + + + + ++ RN LL Sbjct: 109 HIGRLPLIFVSPADATLIEGGSEERRRLMDVVISQYDTPYIESLGRYNKALQQRNSLLKQ 168 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 E D + +E QMAE G + R + L+ + Q + ++SL Sbjct: 169 EEEPDPTLMELLEMQMAEHGEAVYRKRAAFVQELTPVFRRIYQTISNNREQVSL------ 222 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIA 285 EY G +D + R +L G H+ DL++ + Sbjct: 223 -----------EYVSHCQRGSLLDIIQRDRVKDRIMGFSLHGTHKDDLMMKLGGYPMK-R 270 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT--DIG 342 GS G+ K ++ + LA + T G P+LLLD+I LD + + R+V+ D G Sbjct: 271 EGSQGQNKTYVLALKLAQFDFLCRTAGGRTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFG 330 Query: 343 SQIFMTGTDKSVFDSLNETAKF 364 QIF+T T++ D + + + F Sbjct: 331 -QIFITDTNREHLDKILQGSGF 351 >gi|261250637|ref|ZP_05943212.1| DNA recombination and repair protein RecF [Vibrio orientalis CIP 102891] gi|260939206|gb|EEX95193.1| DNA recombination and repair protein RecF [Vibrio orientalis CIP 102891] Length = 360 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 85/365 (23%), Positives = 158/365 (43%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + V + Sbjct: 6 LIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 NELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSS 185 + + RR F+D VF + F+RL + RN LL Y + S+ Sbjct: 121 EGFDLLTDGPKHRRSFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R + + L E + +E P + L + + + + Sbjct: 179 -DQEMARLAENISQWRATYVEQM-KLKAEQICQEFLPEFDIQLKYYRGWDKETPY----Q 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E +K F+ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 233 EILEKNFE---RDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + + G+Q+F++ TD + D +E + Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDSQIADMRDENGRM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|15638998|ref|NP_218444.1| recF protein (recF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025239|ref|YP_001933011.1| recombination protein RecF [Treponema pallidum subsp. pallidum SS14] gi|3322258|gb|AAC65001.1| recF protein (recF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017814|gb|ACD70432.1| recombination protein RecF [Treponema pallidum subsp. pallidum SS14] Length = 403 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 86/351 (24%), Positives = 159/351 (45%), Gaps = 30/351 (8%) Query: 7 IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + FL ++ FRN A + + FVG+NG GKTNILE + + G FR Sbjct: 47 LPFLTVTAINFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFR------- 99 Query: 65 TRIGSPSFFSTFA-----RVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 TR S ++T A RV+ M G ++++ +++ + + ++ N IR EL Sbjct: 100 TRTES-ELYATHARSNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELIS 156 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + + G RR FLD+ + +P + + + L + +NR + E Sbjct: 157 SIPCILFFHNDLDFVVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEK-- 214 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFD 237 +++ Q+A +G + R +++ + + +Y ++ + +++ + D Sbjct: 215 RVQLLDALDTQIATVGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIE---YKPSWSD 271 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S EE L+ RK D ++ GPHR D I +A+ I STG++++V + Sbjct: 272 SSV----EEIVHSLYKRRKHDLAMGMSMSGPHR-DKIHFTRSQALFIPQASTGQRRLVSL 326 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + ++ A + TG P+LL+D++ LD +KR F + Q+F T Sbjct: 327 VLRMSQAVFYTGVTGKLPVLLMDDVLLELDPEKRER-FMMSLPPYDQLFCT 376 >gi|269137361|ref|YP_003294061.1| recombinational DNA repair ATPase [Edwardsiella tarda EIB202] gi|267983021|gb|ACY82850.1| recombinational DNA repair ATPase [Edwardsiella tarda EIB202] gi|304557462|gb|ADM40126.1| DNA recombination and repair protein RecF [Edwardsiella tarda FL6-60] Length = 358 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 84/361 (23%), Positives = 153/361 (42%), Gaps = 14/361 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LVIRDFRNIEDADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R++ G ++++ L ++D + ++I+ V EL + L + + P Sbjct: 66 AAFV-LHGRIDDGGG-RELAVGL-SKDRQGDSKVRIDGSDGHKVAELAQMLPMQLITPEG 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F D + R+++ RN L + + + + Sbjct: 123 FTLLNGGPKYRRAFLDWGCFHGDRGFFTAWNNLRRVLKQRNAALRQ-VTRYAQIRPWDQE 181 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +++ R A++ I + P LS + + + AL E + + Sbjct: 182 LVPLAEQVSALRAAYSEAIAQDIAATC-SQFLPEYALSFSFMRGWDRESDYAALLERHFE 240 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 + D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 241 R-------DRALTYTALGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEYLTR 292 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKFMRIS 368 +G + L+D+ ++ LD +R L + G+Q+F++ + V D ++E K R+ Sbjct: 293 HSGRQCLYLIDDFASELDAGRRRLLAERLKATGAQVFVSAVNADQVGDMVDEKGKMFRVE 352 Query: 369 N 369 Sbjct: 353 Q 353 >gi|332296672|ref|YP_004438594.1| DNA replication and repair protein recF [Treponema brennaborense DSM 12168] gi|332179775|gb|AEE15463.1| DNA replication and repair protein recF [Treponema brennaborense DSM 12168] Length = 362 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 89/350 (25%), Positives = 157/350 (44%), Gaps = 31/350 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+ + FRN + ++ ++ FVG+NG GK+N+LEA+ + S FR + ++ R Sbjct: 6 LSCTNFRNLKNDKIDLLSKEVYFVGENGQGKSNLLEALYYASYASSFRTHNEQELVRYDE 65 Query: 70 PSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 +F T R E + + +SI E + +Q N I EL + L Sbjct: 66 KAFSIRTLFREEN-DSVVSMSILFEN----GKKTIQKNAKKITDRKELVNAIPCV-LFCH 119 Query: 129 MDRIFSGLSMERRR-FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 D F+ ERRR F+D+ + D + M F+++++ RN +L +D + + Sbjct: 120 DDLDFAVGEPERRRFFIDQSLSMYDALYIDEMRRFKKVLKSRNLVLKNQQYD--MLDAYD 177 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSFCALK 244 Q+A+ G+ + R +MI + + +K +TG +DG ++ S+ Sbjct: 178 TQLAQNGLYVQYKRKKMIFTFNGIFTALYEK---------VTG-IDGVTISYEPSWKETS 227 Query: 245 ------EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + L + R D M T+ GPHR + K I STG++++ + Sbjct: 228 HTVPDVDSIVDLLKNRRSADMMMGTTMSGPHRDRIRFIRGGKPF-IPTASTGQRRLASIL 286 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + A A + TG P+LL+D++ LD DKR + ++ Q+F T Sbjct: 287 LRAAQAVYYTEITGRKPVLLMDDVLLELDPDKRQKVTALLPPY-DQLFCT 335 >gi|126668220|ref|ZP_01739181.1| recombination protein F [Marinobacter sp. ELB17] gi|126627369|gb|EAZ98005.1| recombination protein F [Marinobacter sp. ELB17] Length = 411 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 90/394 (22%), Positives = 161/394 (40%), Gaps = 56/394 (14%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR------------ 57 L FRN A+ + F + G NG GKT++LEAI +L GR FR Sbjct: 6 LQTEHFRNLAAKPVTFSPAFNLIDGANGSGKTSLLEAIGYLGLGRSFRVSRHQAVVQHQQ 65 Query: 58 ----------------RASYADVTRIGSPS------------FFSTFARVEGMEGLADIS 89 R S + G P+ ++ + G + + Sbjct: 66 QRFTVFGGLDAGTLNCRGSNSGAFNSGVPNPDTGNSDARNSCIPNSELKAAPEAGASSYA 125 Query: 90 IKLETRDDRSVR--CLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147 +L D ++ L+++ +R + L +HL + + P + I +G +RR+FLD Sbjct: 126 HRLGISRDVGLKETVLRVDGEAVRNLSALARHLPVLVIDPGVFDIVAGGPGKRRQFLDWS 185 Query: 148 VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207 VF ++P +R++ RN+ L G D S + +AQ L ++ AR+ Sbjct: 186 VFHVEPSFGGAWQQCQRVISQRNQTLRNGRIDESLMRAWDAQYDLLSNRVTDARLAAFAL 245 Query: 208 LSS---LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 L++ +KL F G +D + + ++ L R + T Sbjct: 246 FKEAFWLLLGETDAAWANQLKLE---FYPG-WDHA-----QRLSEVLVSHRDQERRMGHT 296 Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 L GP+R+D+ + + + S G+QK +++ + +A ++ G LLD+I+A Sbjct: 297 LYGPNRADIRLKIQGRPVAEIL-SRGQQKTLVILMKIAQG-MVLRPLGKQVTFLLDDINA 354 Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 LD R L + + Q+F+T ++ D+L Sbjct: 355 ELDSRHRQMLAEKLRLLQCQVFITSIEQQTPDTL 388 >gi|52840259|ref|YP_094058.1| DNA recombination and repair protein ATPase RecF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627370|gb|AAU26111.1| DNA recombination and repair protein ATPase RecF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 353 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 39/348 (11%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I FRN AS L+ + G NG GKT++LEA+ LS FR + G Sbjct: 8 IHNFRNIASTSLILNPNFNCITGPNGGGKTSLLEALYMLSCAHSFRSREITPIISYGQNQ 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + FA + IS++ D ++ +N+ +L L + + + Sbjct: 68 -LNVFAHAYDE---STISVQKSITDGTQIK---LNNQFCCTTSQLAYALPCQVIYSDIFQ 120 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDS--SWCSSIEA 188 I RR LD +F + + + D++R++ RN LL + +D W + Sbjct: 121 IIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYDHFIPW----DQ 176 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FLDGKFDQSFCA 242 Q+++L +++ AR + +++ K F + LT + G ++ Sbjct: 177 QLSQLANQLDKAR-------NDYFLQWQPK--FYQVLSDLTNISCTVEYYKGWDRKNAGQ 227 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFL 301 EE +K FD D T GPH++DLI+ + + H S G+QK++L+ + L Sbjct: 228 NMEELLQKSFDS---DRKKLYTQYGPHQADLIIS--TEQYRVKHTLSRGQQKIILIALKL 282 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 A +L+ + L+D+++A LD+ + L + +T Q +T Sbjct: 283 AQGQLLDKDC----LYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITN 326 >gi|295837754|ref|ZP_06824687.1| RecF protein [Streptomyces sp. SPB74] gi|295826659|gb|EFG64967.1| RecF protein [Streptomyces sp. SPB74] Length = 300 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 121/285 (42%), Gaps = 32/285 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYERAEVSLGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F R + ++LE R+ R +R D L +R Sbjct: 61 VRAGA---ERAFVRAAVTQDERSQLVELEINPGRANRARINRSSQVRPRDVLGI-VRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARQPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHI---KLSLT 229 D S + +A G ++ R ++I AL L+ E + P + + S Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLAQRTDLIAALQPLVDKSYEQLAPGGGPALLEYRPSAP 236 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHR 270 G G +EE++ +L RK + TL+GPHR Sbjct: 237 GTAQG---------REEFSAQLLAALGEMRKQEIERGVTLVGPHR 272 >gi|269793362|ref|YP_003312817.1| DNA replication and repair protein RecF [Sanguibacter keddieii DSM 10542] gi|269095547|gb|ACZ19983.1| DNA replication and repair protein RecF [Sanguibacter keddieii DSM 10542] Length = 414 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 95/396 (23%), Positives = 170/396 (42%), Gaps = 56/396 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y + + + T VG NG GKTN++EA+ +++ R +S A + Sbjct: 1 MHVSHLSLLDFRSYTQVDVELEPGVTTLVGPNGQGKTNLVEALGYVATLGSHRVSSDAAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ R + G +++E R+ R Q+N ++ ++ R Sbjct: 61 IRAGA---SRAVVRTRIVRGDRASVVEIEIAQGRANRA-QLNRSPVQRPRDVLGIARTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEG 176 P + G RRRFLD + + PR D+ER++R R+ LL + Sbjct: 117 FAPEDLVLVKGDPDARRRFLDDLTVLLLPRMAGVFSDYERVLRQRSALLKSAGAARRSSN 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINAL-SSLIMEYVQ-KENFPHIKL----SLTG 230 D +A++A++G +I R++++ AL + + Y Q H ++ SL Sbjct: 177 PPDLRTLDVWDAKLAQVGAQIVAVRLQLVAALRPHVAVAYDQVSSGQGHAEIAYRSSLDA 236 Query: 231 FLDGKFDQSFCALKEE-----------YAKKLFDGRKMDSMSR---------RTLIGPHR 270 L G D+S L E + + + R +++++ L+GPHR Sbjct: 237 VLSGVDDRSISGLAAEPVPAPDAGAGAPSSEHLEARLLEALAAVRPKELERGVCLVGPHR 296 Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN----TTGFA------------ 314 DL + + S GE + + LA RL+++ +T A Sbjct: 297 DDLTLTLGGLPAK-GYASHGESWSFALALRLASYRLLTDGPDPSTAEAAFWFADTGPDTE 355 Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 PIL+LD++ A LD +R L +V SQ+ +T Sbjct: 356 PILVLDDVFAELDSRRRGRLAELVAG-ASQVLITAA 390 >gi|297564536|ref|YP_003683508.1| DNA replication and repair protein RecF [Meiothermus silvanus DSM 9946] gi|296848985|gb|ADH62000.1| DNA replication and repair protein RecF [Meiothermus silvanus DSM 9946] Length = 347 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 96/342 (28%), Positives = 142/342 (41%), Gaps = 26/342 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN S T VG N GK+N+LEAI +L+ G G + +D G Sbjct: 6 LRQTHFRNLKSPEFAPAPGLTTVVGGNAQGKSNLLEAI-YLALG-GELKNGLSDRIAFGQ 63 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDELNKHLRISWLVP 127 + +A VE GL+ + KL + R L +N+ + E + L P Sbjct: 64 TEAW-VYAEVETQFGLSRLENKLSLPRPGTPGGRELWLNETSA-SLKEFAQLPGAVLLGP 121 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 + G RRRFLD ++ R+R + + R ++ RN LL G + Sbjct: 122 DDLDLVLGPPEGRRRFLDLLLSRFSARYRAVLSAYSRALQQRNALLKMG---GKGLAVWN 178 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFP---HIKLSLTGFLDGKFDQSFCALK 244 A++A+ G +I R M+ LS L E +E P H++L T D Sbjct: 179 AELAKYGTEILSLRRRMLGKLSPLARESY-RELAPGELHLELVETTPPD----------- 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ L D + D T IGPHR DL + D + S GE + + + + L Sbjct: 227 -EFLPALEDTVQQDLERGATSIGPHRDDLAM-RLDGRDALKFASRGEARSIALALRLGEH 284 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 RL+ AP+LL+DE LD +R AL + I Sbjct: 285 RLLWQHYDEAPLLLVDEWHTELDPRRRGALLSYAQSLPQAIL 326 >gi|285016824|ref|YP_003374535.1| DNA replication and repair protein RecF [Xanthomonas albilineans GPE PC73] gi|283472042|emb|CBA14549.1| probable dna replication and repair protein recf [Xanthomonas albilineans] Length = 366 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 90/365 (24%), Positives = 156/365 (42%), Gaps = 25/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+ R + S+ L + GDNG GKT ILEA+ ++ GR FR + R G Sbjct: 6 LDFHHLRRFPSIELTPAPGMNLITGDNGAGKTTILEAMHLMAYGRSFRCRVRDGLIRQGQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV-------VDELNKHLRI 122 + F VE E AD +TR R+ D R+ + L L + Sbjct: 66 -AGLDVF--VEWHEQAADTG---QTRRRRAGLQHSGQDWRGRLDGQDVPYLGTLCAALAV 119 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 P + SG RRRF+D +F ++P + R ++ RN LL G ++ Sbjct: 120 VTFEPGSHVLVSGGGEARRRFVDWGLFHVEPDFLSLWRRYARALKQRNALLKSGGAGAA- 178 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + ++AE G + R ++ L ++ P + +L G +F + Sbjct: 179 LDAWDHELAEAGEPLTSRRQHYLDRLLRRLLILA-----PELAPAL-GIEQLQFSPGWRR 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFL 301 + A L R D T +GPHR+D + + AI S G+ K+ + L Sbjct: 233 HEISLADALLLNRDRDRQLGYTTVGPHRADWSLSFA--AIPGRDALSRGQAKLTALACLL 290 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLN 359 A A + G P++ LD++++ LD+ + + + + +Q+F+T T+ +++ D+ Sbjct: 291 AQAEDYAEQRGEWPVIALDDLASELDQHHQARVLQRLRAGPAQVFLTATETPQALSDAGL 350 Query: 360 ETAKF 364 A+F Sbjct: 351 PIARF 355 >gi|257455166|ref|ZP_05620404.1| DNA replication and repair protein RecF [Enhydrobacter aerosaccus SK60] gi|257447499|gb|EEV22504.1| DNA replication and repair protein RecF [Enhydrobacter aerosaccus SK60] Length = 390 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 99/377 (26%), Positives = 171/377 (45%), Gaps = 38/377 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L I FRN ++ L + +F+G NG GKT++LE+I LS G+ FR Sbjct: 1 MQIIQLAIHHFRNLHTIELQ-PSSCNVFLGQNGSGKTSLLESIYLLSRGKSFRHHQPRHY 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S + FAR+ + +A + D + + L++N + L + L Sbjct: 60 IEHGF-SDTTVFARLNHGQTVA-----IAKSQDATTQ-LRLNGQSLVTQSPLAQLLPTLL 112 Query: 125 LVP-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 L P S+ ++ G S RR LD + F ++ + ++RL++ RN LL + + S Sbjct: 113 LEPVSLAQLEDG-SQARREMLDWLGFHVEQSFHPNWLAYQRLLKQRNSLLKQNVGNVSLT 171 Query: 184 -------SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 S+ + Q+++ KI+ AR ++I + VQK P L F Sbjct: 172 SLQQHELSAWDYQLSQHAEKIHQARADIIEQWQPHFLAQVQK-FLPQYAEKLRLRYTPGF 230 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG--------- 287 D + L A +L ++ T +G HRSD+ V D T A G Sbjct: 231 D-TEAGLAITLANRLASDIELG----YTRMGCHRSDINV-VLDLVHTDAAGHKHKQTLLA 284 Query: 288 ----STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 S GE+K++++ + L+ L+ N P++L+D+I+A LD D L + + S Sbjct: 285 TDMLSRGEKKLLVMALRLSQLPLL-NQVDKVPLVLVDDITAELDNDALMLLLTGLKQVNS 343 Query: 344 QIFMTGTDKSVFDSLNE 360 Q+F+T + + +S+ + Sbjct: 344 QLFITSLTQDIVESIQK 360 >gi|229816999|ref|ZP_04447281.1| hypothetical protein BIFANG_02254 [Bifidobacterium angulatum DSM 20098] gi|229785744|gb|EEP21858.1| hypothetical protein BIFANG_02254 [Bifidobacterium angulatum DSM 20098] Length = 384 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 94/372 (25%), Positives = 155/372 (41%), Gaps = 50/372 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + FR++ + + F + G NG+GKTN++EA+ LS G Sbjct: 3 ISRLALDHFRSWNQVVVDFTPGVNVLYGANGLGKTNLVEAVEVLSTG------------- 49 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRS--VRCLQINDVVIRVVDELNKHLR-IS 123 GS S+ VE G A I + T + + V RV +++LR + Sbjct: 50 -GSHRVNSSLPLVERGYGKATIRVNANTAETTTYEVTIAARGANRARVNSGPSQYLRDVV 108 Query: 124 WLVPSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174 LVPS+ R+ S RR FL++ + P + R+ F ++ R R LL Sbjct: 109 GLVPSVSFTPEDQRLISADPATRRGFLNQSAGMLIPGYTGRLQRFTQIARQRAALLKQLG 168 Query: 175 --EGYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 EG D+ S Q E GV + R E++ L++ + + H K + Sbjct: 169 QHEGSADAVLSGLEVWTGQFIEAGVALTRMRNEVMGILATPFSDIYARLASGHGKAEIV- 227 Query: 231 FLDGKFDQSFCALKE---------EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 ++ SF +++ E+ ++L+ G M+ LIGP R D V D Sbjct: 228 -----YEPSFVEVRDCDTPELNISEHFQRLYPGEVSRGMN---LIGPQRDDFSV-LLDGE 278 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 S GE + + + +A I+ + G PI++LD++ A LDE +R+ + D Sbjct: 279 PARDFASNGEMWTMALSLKMALFEAIAESRGIRPIVILDDVFAQLDESRRHQILDFAND- 337 Query: 342 GSQIFMTGTDKS 353 Q+ +T S Sbjct: 338 QDQVLVTAAAAS 349 >gi|54295986|ref|YP_122355.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str. Paris] gi|53749771|emb|CAH11151.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str. Paris] Length = 353 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 84/349 (24%), Positives = 148/349 (42%), Gaps = 41/349 (11%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I FRN AS L+ + G NG GKT++LEA+ LS FR A + G Sbjct: 8 IHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVAPIISYGQNQ 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + FA + IS++ D ++ +N+ +L L + + + Sbjct: 68 -LNVFAHAYDE---STISVQKSITDGTQIK---LNNQFCCTTSQLAYALPCQVIYSDIFQ 120 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIE 187 I RR LD +F + + + D++R++ RN LL T +F W + Sbjct: 121 IIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHF-IPW----D 175 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FLDGKFDQSFC 241 Q+++L +++ AR + + + F + LT + G ++ Sbjct: 176 QQLSQLANQLDKARNDYF---------FQWQPKFYQVLSDLTNISCTVEYYKGWDRKNAG 226 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIF 300 EE +K FD D T GPH++DLI+ + + H S G+QK++L+ + Sbjct: 227 QNIEELLQKSFDS---DRNKLYTQYGPHQADLIISI--EQYRVKHTLSRGQQKIILIALK 281 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 LA +L+ + L+D+++A LD+ + L + +T Q +T Sbjct: 282 LAQGQLLDKDC----LYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITN 326 >gi|301161961|emb|CBW21505.1| putative DNA replication and repair protein [Bacteroides fragilis 638R] Length = 370 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 22/358 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + R Sbjct: 3 LKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E M+G +I ++ R + + + + L+ H+ L Sbjct: 63 -HEQDFFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKRNK------KEYSRLSDHIGFIPL 115 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 V P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E MA+ G + R I+ + + + ++ LT + Sbjct: 176 LFLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHARNASLLE 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L+E R D + +L G H+ +L + D I GS G+ K LV + L Sbjct: 236 VLQE--------SRVRDKIMGYSLRGIHKDELNMLLGDFPIK-REGSQGQNKTYLVALKL 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358 A + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 287 AQFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRI 344 >gi|307565627|ref|ZP_07628105.1| DNA replication and repair protein RecF [Prevotella amnii CRIS 21A-A] gi|307345659|gb|EFN91018.1| DNA replication and repair protein RecF [Prevotella amnii CRIS 21A-A] Length = 368 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 90/371 (24%), Positives = 158/371 (42%), Gaps = 41/371 (11%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I ++N + L + F+G NG GKTN+L+AI +LS + ++V + G Sbjct: 6 LSIINYKNIQTATLELSPKLNCFIGHNGEGKTNLLDAIYYLSFCKSAFNPKDSEVIQHG- 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDELNKHL 120 + F +EG + E D V C + N + L++H+ Sbjct: 65 ----TNFFVIEG-------NYTNEHGDKEQVYCGMKRGQKKHFKRNK---KEYKRLSQHI 110 Query: 121 RISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 + LV P+ + G S ERR+ +D ++ D + + + + ++ RN LL + Sbjct: 111 GLVPLVFISPADSSLIEGGSEERRKLMDVVISQYDAAYIEALTRYNKALQQRNSLLKQEE 170 Query: 178 FDSSWCSSIEA-QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + QMAE G + R + L + + + H K+SLT G+ Sbjct: 171 GLDETLLELLEMQMAEYGEYVFKKRTVFVEELQPIFQNIYKCISNDHEKVSLTYMSHGQR 230 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ + R D + +L G H+ DL++ D I +GS G+ K + Sbjct: 231 GNLLDIIR--------NSRDKDKIMGYSLHGVHKDDLVMLLGDYPIK-RYGSQGQNKTYV 281 Query: 297 VGIFLAHARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTGTDKS 353 + + LA + T P+LLLD+I LD ++ + +V+ D G QIF+T T++ Sbjct: 282 LSLKLAQFDFLCRTALHNTPLLLLDDIFDKLDSNRVKQIINLVSGDDFG-QIFITDTNRE 340 Query: 354 VFDSLNETAKF 364 D + F Sbjct: 341 HLDKILHGGDF 351 >gi|304390483|ref|ZP_07372436.1| recombination protein F [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326239|gb|EFL93484.1| recombination protein F [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 413 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 101/391 (25%), Positives = 166/391 (42%), Gaps = 38/391 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT--RI 67 L + FR+Y + L F A +FVG NG GKTN+LEA+++L+ R + A + I Sbjct: 6 LALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGLIFREI 65 Query: 68 G----SPSFFSTF---ARVEGMEGLADIS-----IKLETRDDRSVRCLQINDVVIRVVDE 115 G SP+ ARV L D +++E R+ R + IN +R Sbjct: 66 GDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNVRPRSL 124 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L HL P ++ G RR FLDR+ + P + ++ ++ R R L + Sbjct: 125 LG-HLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRGAYLKD 183 Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFP-HIKLSL 228 D S + + V++ R +I+ L+ + Y + P + L+ Sbjct: 184 VAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPSVYARIAGHPAPVGLTY 243 Query: 229 TGFLDGKFDQSFCALKEEYA---------KKLFDGRKMDSMSRR-TLIGPHRSDLIVDYC 278 + + S +E YA ++ R D R L+GPHR +L + + Sbjct: 244 ADSVTKTLELSADEQREMYANPELLSSVFRQALAQRHADEARRGVNLVGPHRDELEL-HL 302 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 + S GE + + LA L+ P+LLLD++ A LDE +R AL + Sbjct: 303 NGLPVKGFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAALLWAI 362 Query: 339 TDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 D Q+F+T T + ++L+ A F R++ Sbjct: 363 -DQADQVFITSATGTEIPEALH--AAFYRVT 390 >gi|111219509|ref|YP_710303.1| recombination protein F [Frankia alni ACN14a] gi|122954749|sp|Q0RUP6|RECF_FRAAA RecName: Full=DNA replication and repair protein recF gi|111147041|emb|CAJ58688.1| DNA replication and repair protein recF [Frankia alni ACN14a] Length = 378 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 151/360 (41%), Gaps = 21/360 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y SL L VG NG GKTN++EAI +++ R ++ A + Sbjct: 1 MHLTHLSLVDFRSYPSLDLTLGPGVVTLVGRNGQGKTNLIEAIGYVATLASHRVSADAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ S AR+ + G ++LE R+ R V R D L L Sbjct: 61 VRQGA-SHAVVRARI--VRGDRAALVELEIVPGRANRARLNRAPVPRPRDVLGL-LCTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEG 176 P + G RR+FLD ++ A PR + D++R+++ R+ LL G Sbjct: 117 FAPEDLALVKGDPAGRRQFLDELLVARTPRMAAVLADYDRVLKQRSTLLRTAGAARRAGG 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP------HIKLSLTG 230 D + +A G ++ AR+ ++ AL + + S+ Sbjct: 177 KGDLRTLDVWDGYLASYGAELLTARLALVEALRPGVAGAYAAVAGAQAAVGFEYRASVPQ 236 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +E +L R + +TL+GPHR DL++ D + S G Sbjct: 237 PAPDPVRPDRERWEEAIRAELVAARPREIERGQTLVGPHRDDLLL-TVDGLPARGYASHG 295 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 E + + + LA L+ P+LLLD++ A LD +R+ L +V Q+ +T Sbjct: 296 ESWSLALALRLASFELL-RADDREPVLLLDDVFAELDVQRRSRLAELVAP-AEQVLVTAA 353 >gi|281424150|ref|ZP_06255063.1| RecF protein [Prevotella oris F0302] gi|281401711|gb|EFB32542.1| RecF protein [Prevotella oris F0302] Length = 366 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 32/366 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--- 66 L+I ++N + + F+G NGVGKTN+L+A+ +LS F R+++ + Sbjct: 6 LSILNYKNIREATISLSPKLNCFIGSNGVGKTNVLDAVHYLS----FCRSAFNPIDSQVI 61 Query: 67 IGSPSFF---STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + F + EG E +K T+ + + N R L++H+ + Sbjct: 62 MHNQDFLVLEGNYTTDEGEEEQIYCGMKRGTK-----KHFKRNKKEYR---RLSQHIGLI 113 Query: 124 WLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFD 179 LV PS + G S ERRR LD ++ D + + + + ++ RN LL E D Sbjct: 114 PLVFASPSDSVLIEGGSEERRRLLDLVISQYDHAYIEALSAYNKALQQRNALLKMEDEPD 173 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + E QMA G I R + L + + H +SL G+ Sbjct: 174 KALLEIWEEQMAMNGEVIYQKRDAFVKRLVPVFQNIYSHISGDHETVSLNYISHGQRGSL 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++ + R D +L G HR DL + D GS G+ K + + Sbjct: 234 LDTIQRD--------RYKDRAVGYSLHGVHRDDLEM-LLDGYQMKREGSQGQHKTYALAL 284 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358 LA + +T+ P+LLLD+I LD D+ + ++V G QIF+T T++ D + Sbjct: 285 KLAQFDFLRHTSNSTPLLLLDDIFDKLDADRVEQIVQLVGGEGFGQIFITDTNRDHLDRI 344 Query: 359 NETAKF 364 F Sbjct: 345 LANGDF 350 >gi|172037526|ref|YP_001804027.1| recombination protein F [Cyanothece sp. ATCC 51142] gi|254790472|sp|B1WT39|RECF_CYAA5 RecName: Full=DNA replication and repair protein recF gi|171698980|gb|ACB51961.1| DNA repair and genetic recombination protein [Cyanothece sp. ATCC 51142] Length = 380 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 97/394 (24%), Positives = 185/394 (46%), Gaps = 57/394 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ FRNY L +Q TI +G+N GK+N+LEA+ L+ + R D+ Sbjct: 3 LKHIHLYGFRNYHEQTLDLQSQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDLIL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + A VE G +++ I + RS L +N + L +HL + Sbjct: 63 EGKKT-GQILAMVERTYGESELGITFRSPGRRS---LMLNH------ENLRRHLDFLGHI 112 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----- 173 +++ FS L ++ RR +LD ++ ++P + + + +++R RN LL Sbjct: 113 NAVE--FSCLDLDLVRGSPETRRSWLDTLLIQLEPVYASIIHQYYKILRQRNALLKVIRK 170 Query: 174 -TEGYFDSSWCSS-------IEAQMAELGVKINIARVEMINALSSLIMEYVQK------- 218 E +SS S+ + Q+AE G ++ R +I ++ L ++ Q+ Sbjct: 171 TVEEQENSSNLSAELSQLKVWDQQLAEAGTRVTRRRYRVIERITPLAQKWHQEISSGTEI 230 Query: 219 ---ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 P+IK+ ++ +++ + K+ R + T++GPHR D+ Sbjct: 231 LAINYLPNIKIE---------NEDPQQVQQAFLDKIEQRRMAEQQLATTVVGPHRDDVEF 281 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 + + ++GS G+Q+ +++ I LA +LI G P+LLLD++ A LD +++N L Sbjct: 282 N-INHTPAKSYGSQGQQRTLVLAIKLAELQLIEEVIGEPPLLLLDDVLAELDPNRQNQLL 340 Query: 336 RIVTDIGSQIFMTGTDKSVFDS--LNETAKFMRI 367 ++ Q +T T FD+ LN +++ M++ Sbjct: 341 EVIQG-RFQTLITTTYLHSFDAQWLN-SSQIMKV 372 >gi|298208521|ref|YP_003716700.1| putative DNA replication and repair protein [Croceibacter atlanticus HTCC2559] gi|83848444|gb|EAP86313.1| putative DNA replication and repair protein [Croceibacter atlanticus HTCC2559] Length = 359 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 86/354 (24%), Positives = 154/354 (43%), Gaps = 28/354 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N+ S FD++ VG NG+GKTN+L++I LS G+ SY + Sbjct: 3 LKQLSLINYKNFESETFEFDSKINCLVGANGIGKTNVLDSIYHLSLGK-----SYFNPIT 57 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISWL 125 + F ++G D + K+ R + ++ N E L + + Sbjct: 58 SQNIKHHEDFFVIDGEFVKQDRTEKIVVSAKRGQKKVIKRNSKAYERFSEHVGLLPVVII 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSS 181 P+ + + S RR+F+D ++ D + +I + +++ RN LL F+SS Sbjct: 118 SPADRDLITEGSDTRRKFMDGIISQNDKTYLDNLISYNKVLAQRNALLKYFAANRTFESS 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQS 239 Q++ +I R + + + E Q N + +S Sbjct: 178 TLEVYNEQLSNYASEIFETRTLFLESFIPIFKERYQTISNNKEQVTISYK---------- 227 Query: 240 FCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 LK+ LF+ R + R+ T +G H+ DL + I GS G+QK L+ Sbjct: 228 -SQLKKGNLASLFEERLQKDLQRQYTTVGTHKDDLDFGIENHPIK-RFGSQGQQKSFLIA 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTGT 350 + LA I + PILLLD++ LDE + + +V+ ++G Q+F++ T Sbjct: 286 LKLAQYDFIKAKSKVNPILLLDDVFDKLDEQRVEQIVSLVSTGELG-QLFISDT 338 >gi|312174327|emb|CBX82580.1| DNA replication and repair protein recF [Erwinia amylovora ATCC BAA-2158] Length = 361 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 88/361 (24%), Positives = 149/361 (41%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEDADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDR 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R+ E + + D VR I+ V EL + L + + P Sbjct: 66 DAFV-LHGRIAATEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F +P + RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHNEPGFFNAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +A L +I+ R A+++ I + P +LS + F G +D+ YA+ Sbjct: 181 LAPLAEQISQWRAAYSEAIAADINATC-AQFLPEFQLSFS-FQRG-WDKD-----SGYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + + S G+ K+++ + LA ++ Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 G + L+D+ ++ LDE +R L + +Q+F++ + VFD +E K + Sbjct: 292 QNGRRCLYLIDDFASELDETRRQLLAAHLKATQAQVFVSAIAAEHVFDMADEKGKMFHVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|292490134|ref|YP_003533029.1| DNA replication and repair protein RecF [Erwinia amylovora CFBP1430] gi|292901138|ref|YP_003540507.1| DNA replication and repair protein [Erwinia amylovora ATCC 49946] gi|291200986|emb|CBJ48125.1| DNA replication and repair protein [Erwinia amylovora ATCC 49946] gi|291555576|emb|CBA24169.1| DNA replication and repair protein recF [Erwinia amylovora CFBP1430] Length = 361 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 88/361 (24%), Positives = 149/361 (41%), Gaps = 15/361 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIEDADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDR 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F R+ E + + D VR I+ V EL + L + + P Sbjct: 66 DAFV-LHGRIAATEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR ++D F +P + RL++ RN L + + + + Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHNEPGFFNAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +A L +I+ R A+++ I + P +LS + F G +D+ YA+ Sbjct: 181 LAPLAEQISQWRAAYSEAIAADINATC-AQFLPEFQLSFS-FQRG-WDKD-----SGYAE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T GPH++D + + S G+ K+++ + LA ++ Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 G + L+D+ ++ LDE +R L + +Q+F++ + VFD +E K + Sbjct: 292 QNGRRCLYLIDDFASELDETRRQLLAAHLKATQAQVFVSAIAAEHVFDMADEKGKMFHVE 351 Query: 369 N 369 Sbjct: 352 Q 352 >gi|291059423|gb|ADD72158.1| DNA replication and repair protein RecF [Treponema pallidum subsp. pallidum str. Chicago] Length = 357 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 86/351 (24%), Positives = 159/351 (45%), Gaps = 30/351 (8%) Query: 7 IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + FL ++ FRN A + + FVG+NG GKTNILE + + G FR Sbjct: 1 MPFLTVTAINFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFR------- 53 Query: 65 TRIGSPSFFSTFA-----RVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 TR S ++T A RV+ M G ++++ +++ + + ++ N IR EL Sbjct: 54 TRTES-ELYATHARSNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELIS 110 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + + G RR FLD+ + +P + + + L + +NR + E Sbjct: 111 SIPCILFFHNDLDFVVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEK-- 168 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFD 237 +++ Q+A +G + R +++ + + +Y ++ + +++ + D Sbjct: 169 RVQLLDALDTQIATVGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIE---YKPSWSD 225 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S EE L+ RK D ++ GPHR D I +A+ I STG++++V + Sbjct: 226 SSV----EEIVHSLYKRRKHDLAMGMSMSGPHR-DKIHFTRSQALFIPQASTGQRRLVSL 280 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + ++ A + TG P+LL+D++ LD +KR F + Q+F T Sbjct: 281 VLRMSQAVFYTGVTGKLPVLLMDDVLLELDPEKRER-FMMSLPPYDQLFCT 330 >gi|320334765|ref|YP_004171476.1| DNA replication and repair protein recF [Deinococcus maricopensis DSM 21211] gi|319756054|gb|ADV67811.1| DNA replication and repair protein recF [Deinococcus maricopensis DSM 21211] Length = 368 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 98/388 (25%), Positives = 158/388 (40%), Gaps = 56/388 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----------- 53 + ++ L +RN + L T G+NG GKTN+LEA G Sbjct: 12 VHLRALTTLHYRNLSPATLDLPRGITSIWGENGAGKTNLLEAAYLALTGLTNAPRVEQLV 71 Query: 54 -RGFRRASY-ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111 RG R AD+ GS S GLA R R ++++ V R Sbjct: 72 TRGEREGYVRADLHSGGSTSILEV--------GLA-----------RGRRHVKVDGVRAR 112 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 D L + + W+ P + G RR +LD ++ + R+ ++ FER + RN Sbjct: 113 SSD-LPRGSAV-WIRPEDSDLVYGSPSARRAYLDALLSRLSVRYAHQLSRFERTLTQRNA 170 Query: 172 LLTEGYFDSSWCSSI-EAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLT 229 L G +W + + + LG ++ R ++ L+ L + Q + L+LT Sbjct: 171 ALKSG---ETWAMDVWDDALVTLGSELMTMRRRVLVRLAELTQAAHTQLGGHKPLTLALT 227 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGS 288 E Y L R+ + ++R +T+IGPHR DL + D S Sbjct: 228 ----------ESTTPETYLADLA-ARRAEELARGQTVIGPHRDDLALT-LDLFPAADFAS 275 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + V + + A L+ G P+LL+D+ +A LD ++R L + + Q +T Sbjct: 276 RGEARTVALALRKAELDLLRERYGENPVLLIDDFTAELDPNRRQFLLDLAHSV-PQALVT 334 Query: 349 GTDKSVFDSLN---ETAKFMRISNHQAL 373 GT+ + L E+ FM + Q L Sbjct: 335 GTEHAPGARLTLRAESGTFMPDAAQQPL 362 >gi|113460284|ref|YP_718343.1| recombination protein F [Haemophilus somnus 129PT] gi|123327073|sp|Q0I0Y5|RECF_HAES1 RecName: Full=DNA replication and repair protein recF gi|112822327|gb|ABI24416.1| DNA replication and repair protein RecF [Haemophilus somnus 129PT] Length = 358 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 84/357 (23%), Positives = 155/357 (43%), Gaps = 38/357 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I+ FRN ++ L F+ +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLIINHFRNLTAIDLEFERGFNFIIGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F +++ + + ++ + + + ++IN + + +L L + Sbjct: 61 ISYQQPHFI-LHGKIQEQQHQWSVGLQKQRQGN---TLMKINGEDAKKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR +LD +F + RL++ RN L + CS Sbjct: 117 ITPEGLTLLNGGPSYRRAYLDWGLFHHNASFYNAWSSLNRLLKQRNSALQQV------CS 170 Query: 185 S-----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + ++ +L +++ R AL S I + Q P +++S++ F G +D++ Sbjct: 171 YEKLKIWDRELTKLAYQVSYWREAYAEALRSEIEKTCQL-FLPELEISVS-FHQG-WDKN 227 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-------STGEQ 292 +YA L + D T GP ++D A+G S G+ Sbjct: 228 M-----DYADLLQQNFERDRALGYTFSGPQKADFRFK--------ANGLPVEDILSRGQL 274 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 K+++ + LA + I LLD+ ++ LD+ KR L + GSQ+F+T Sbjct: 275 KLLMCALRLAQGEHLMQQKKRHCIFLLDDFASELDQYKRTLLAERLQKNGSQVFVTA 331 >gi|170718431|ref|YP_001783358.1| recombination protein F [Haemophilus somnus 2336] gi|189039626|sp|B0UUM0|RECF_HAES2 RecName: Full=DNA replication and repair protein recF gi|168826560|gb|ACA31931.1| DNA replication and repair protein RecF [Haemophilus somnus 2336] Length = 358 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 84/357 (23%), Positives = 155/357 (43%), Gaps = 38/357 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I+ FRN ++ L F+ +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLIINHFRNLTAIDLEFERGFNFIIGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F +++ + + ++ + + + ++IN + + +L L + Sbjct: 61 ISYQQPHFI-LHGKIQEQQHQWSVGLQKQRQGN---TLMKINGEDAKKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR +LD +F + RL++ RN L + CS Sbjct: 117 ITPEGLTLLNGGPSYRRAYLDWGLFHHNASFYNAWSSLNRLLKQRNSALQQV------CS 170 Query: 185 S-----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + ++ +L +++ R AL S I + Q P +++S++ F G +D++ Sbjct: 171 YEKLKIWDRELTKLAYQVSYWREAYAEALRSEIEKTCQL-FLPELEISVS-FHQG-WDKN 227 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-------STGEQ 292 +YA L + D T GP ++D A+G S G+ Sbjct: 228 M-----DYADLLQQNFERDRALGYTFSGPQKADFRFK--------ANGLPVEDILSRGQL 274 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 K+++ + LA + I LLD+ ++ LD+ KR L + GSQ+F+T Sbjct: 275 KLLMCALRLAQGEHLMQQKKRHCIFLLDDFASELDQYKRTLLAERLQKNGSQVFVTA 331 >gi|261346740|ref|ZP_05974384.1| DNA replication and repair protein RecF [Providencia rustigianii DSM 4541] gi|282565140|gb|EFB70675.1| DNA replication and repair protein RecF [Providencia rustigianii DSM 4541] Length = 364 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 153/366 (41%), Gaps = 22/366 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L +G NG GKT+ILEAI L GR FR V R Sbjct: 6 LLIRDFRNIEDADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRVIRHDQ 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F ++ + + D VR I+ + EL K L + + P Sbjct: 66 EQFILHGKLGHLDSDRKALSLGLSKNREGDSKVR---IDGTDGHKIAELAKLLPMQLITP 122 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCS 184 + +G RR F+D F + D +RL++ RN R +T W Sbjct: 123 EGFTLLNGGPKYRRAFIDWGCFHNEALFFSTWSDLKRLLKQRNAALRQVTRYEQIRHW-- 180 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A + +I+ R E I ++ I + Q + P LS++ F G +D+ Sbjct: 181 --DQQLAPISEQISQWRGEYIAGIAENIEQTCQ-QFLPEFSLSVS-FQRG-WDKEI---- 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y+++L + D T GPH++DL + D S G+ K+++ + LA Sbjct: 232 -DYSEQLERQFERDRALTYTSSGPHKADLRI-RADGIPVEDMLSRGQLKLLMCALRLAQG 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ T V D ++ +K Sbjct: 290 EYLTQQSGQRCLYLLDDFASELDSGRRQLLATRLKATQAQVFVSAITPAQVNDMIDANSK 349 Query: 364 FMRISN 369 + Sbjct: 350 MFSVEQ 355 >gi|119025021|ref|YP_908866.1| recombination protein RecF [Bifidobacterium adolescentis ATCC 15703] gi|254790464|sp|A0ZZA1|RECF_BIFAA RecName: Full=DNA replication and repair protein recF gi|118764605|dbj|BAF38784.1| recombination protein RecF [Bifidobacterium adolescentis ATCC 15703] Length = 403 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 88/360 (24%), Positives = 144/360 (40%), Gaps = 51/360 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R++ L F+ I G NG+GKTNI+EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWDHCVLDFEPGINILQGSNGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G PS + A VE I + R R +R + + W Sbjct: 61 VEKGHPS-ATVRANVEDAGEQRTYEITIAARGANRARVDGGKSQYMRDI--------VGW 111 Query: 125 L-----VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---- 175 + P R+ SG RR FL++ + PR+ + + F + + R LL + Sbjct: 112 VPSVSFTPEDQRLVSGDPATRRNFLNQAASLLLPRYAQSLQQFTHVAKQRAALLKQLSDG 171 Query: 176 -----GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 Y + S +E Q LGV++ R ++I L +E F I S Sbjct: 172 SGIDPEYGRQAVLSGLEVWTGQFIALGVQLTKDRNDVIGLL---------REPFTRIYAS 222 Query: 228 LTG-------FLDGKFDQSF-----CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 L G + FD+ A + ++++ G + + LIGP R DL + Sbjct: 223 LAGEEEQADLVYEPSFDEVLLFDEPAAEISRHFQRIYPG---EVARGQNLIGPQRDDLTL 279 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 D S GE + + + +A ++S PI++LD++ A LDE +R + Sbjct: 280 RLNDMPAR-EFASNGEMWTMALALKMALYEVVSAQRDVKPIVILDDVFAQLDESRRGQIL 338 >gi|330718065|ref|ZP_08312665.1| DNA replication and repair protein RecF [Leuconostoc fallax KCTC 3537] Length = 343 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 78/350 (22%), Positives = 148/350 (42%), Gaps = 45/350 (12%) Query: 33 VGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKL 92 +G+N GKTN+LE+I L+ R R ++ D+ + + RV G +S+ Sbjct: 1 MGENAQGKTNLLESIYVLALARSHRTSNDKDLIQWQQKET-TISGRVHRRTGDLPLSLNF 59 Query: 93 ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152 + ++ ++N + + + L + P + G RRRF+D ++ Sbjct: 60 SNKGKKA----RVNHLEQSKLSQYVGQLNVILFAPEDLELVKGAPTIRRRFIDMEFGQMN 115 Query: 153 PRHRRRMIDFERLMRGRN----RLLTEGYFDSSWCSSIEAQMAELGVKINIAR------- 201 P + ++++++ RN RL D+ + + Q+ + G ++ +AR Sbjct: 116 PLYLYHSAQYKKILKNRNAYLKRLQLGQTKDTVFLDVLTEQLVDTGSQVILARQAFLKNL 175 Query: 202 --------VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 E+ N L ++Y + LS +D Q +L+++Y ++ Sbjct: 176 ELAAQPIHTEISNQQEKLTLKYQSS-----VDLSENTNIDQIKSQFLESLRQQYQREKSQ 230 Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313 G T +GPHR D+ + + GS G+Q+ + + LA L+ TG Sbjct: 231 GS--------TALGPHRDDVQF-WVNGKDVATFGSQGQQRTAALSVKLAEIHLMQQETGE 281 Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 P+LLLD++ + LD ++ L + D Q F+T SL++ AK Sbjct: 282 YPVLLLDDVLSELDASRQTHLLLAIQD-KVQTFITAP------SLSDVAK 324 >gi|119509397|ref|ZP_01628546.1| DNA repair and genetic recombination protein [Nodularia spumigena CCY9414] gi|119466011|gb|EAW46899.1| DNA repair and genetic recombination protein [Nodularia spumigena CCY9414] Length = 376 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 100/374 (26%), Positives = 173/374 (46%), Gaps = 41/374 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ +FRNY ++ F A TI VG+N GK+N+LEA+ L+ R R AD + Sbjct: 3 LKNLHLRQFRNYQDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMGRVADFIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRISWL 125 G A +E G +D+++ L RSV IN + V R +D L + + Sbjct: 63 EGQ-DIAQINAILERENGTSDLALTLRRNGRRSV---AINGESVRRQMDFLGVLNAVQFS 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----- 180 +D + G + RR +LD ++ ++P + + + +++R RN L + DS Sbjct: 119 SLDLDLVRGGPDV-RRNWLDTLLIQLEPIYAHLLQQYNQVLRQRNAFLKKA-LDSADGIN 176 Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHI 224 S + +AQ+ G K+ R I L+ + E +Q P + Sbjct: 177 RVSTQDSTLAIWDAQLVTTGTKVIRRRDRAIQRLAPIAAAWHSSISGSTEVLQINYLPSV 236 Query: 225 KLSLTGFLDGKFDQSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 L+ + Q+F +++ A +L+ G TL+GPHR ++ + ++ Sbjct: 237 PLA--QIPPEEIQQAFLGKIQQRSAAELYRG--------TTLVGPHRDEVEL-IINQTPA 285 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 +GS G+Q+ +++ + LA LI P+LLLD++ A LD ++N L + D Sbjct: 286 RQYGSQGQQRTLVLALKLAELELIEQVVQEPPLLLLDDVLAELDPFRQNQLLDAIQD-RF 344 Query: 344 QIFMTGTDKSVFDS 357 Q +T T S FD+ Sbjct: 345 QTLITTTHLSSFDA 358 >gi|72382983|ref|YP_292338.1| recombination protein F [Prochlorococcus marinus str. NATL2A] gi|72002833|gb|AAZ58635.1| DNA replication and repair protein RecF [Prochlorococcus marinus str. NATL2A] Length = 348 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 90/343 (26%), Positives = 154/343 (44%), Gaps = 36/343 (10%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM-EGLADIS 89 I +G NGVGK+N+LE+I LS R R D+ + A + M E +S Sbjct: 9 IVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLI-----YWDQDQACLSAMIEDDQKLS 63 Query: 90 IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI-FSGLSME--------R 140 ++L + R + + + ++ R +D L+ M + FS L +E R Sbjct: 64 LELNRKGGR--KAYKNDKLLNRQID----------LIGPMRSVGFSALDLELIRGEPSLR 111 Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGV 195 R +LDR+V ++P + + F RL+R R++L +SS S + QMA + Sbjct: 112 RHWLDRIVQQLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLDSFDMQMALVST 171 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFD 253 +I+ R +++ L + + Q + L +T K + +S +E ++L + Sbjct: 172 RIHRRRRRILDRLLPIASSWQQHLSNSQENLDITYLPGSKLEAEESERLWRESIERQLLE 231 Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313 R + ++ +GPHR D+ D GS G+Q+ +++ + LA LI G Sbjct: 232 MRSEEEITGNCRVGPHRDDVQFSIND-VDARRFGSAGQQRTIVLSLKLAELELIKMVYGK 290 Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +PILLLD++ A LD KR L Q ++ T F+ Sbjct: 291 SPILLLDDVLAELDP-KRQLLLLEAVGQKHQCLISATHLESFE 332 >gi|160944263|ref|ZP_02091492.1| hypothetical protein FAEPRAM212_01772 [Faecalibacterium prausnitzii M21/2] gi|158444445|gb|EDP21449.1| hypothetical protein FAEPRAM212_01772 [Faecalibacterium prausnitzii M21/2] Length = 373 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 157/370 (42%), Gaps = 34/370 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RN + RL + T+ G+NG GKTN+LEAI L+ G+ FR A++ Sbjct: 1 MRLLSLEVQNYRNICAARLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 65 TRIGSPSFFSTFA-----RVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDEL 116 R G +F A R EG E I++ + R +N + L Sbjct: 61 VRRGE-AFAVLEADTQRDRPEGCEPAEPAHIRMTVGTPEAAKPGRYAAVNGAAPKRAAAL 119 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 P + G RR+FLD + + P + + R+++ +N LL Sbjct: 120 AGSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLASYRRYVRVLQQKNALLRH- 178 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 S Q K + +E++N + E +Q+ ++KL Sbjct: 179 --------SANGQERPYAEKRTL--LEVLNTELAAQGEALQQRRREYLKLLAPRACANYA 228 Query: 237 DQSFCA--LKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIA 285 + S A + YA + G + + +R +L G HR DL + D+ + Sbjct: 229 ELSHGAERMSIRYAAQFAPGGLAELLRQRQEEELRAGQSLCGIHREDLELLLDDQPARV- 287 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 + S G+Q+ V++ + +A A + TG P+LLLD++ + LDE ++ L + + Q Sbjct: 288 YASQGQQRSVVLSLKMAEAAAAAQITGEHPVLLLDDVLSELDEGRKQYLLTCMKE--KQT 345 Query: 346 FMTGTDKSVF 355 F+T D + F Sbjct: 346 FVTSCDDTDF 355 >gi|167754087|ref|ZP_02426214.1| hypothetical protein ALIPUT_02375 [Alistipes putredinis DSM 17216] gi|167658712|gb|EDS02842.1| hypothetical protein ALIPUT_02375 [Alistipes putredinis DSM 17216] Length = 362 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 97/371 (26%), Positives = 169/371 (45%), Gaps = 24/371 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ F+N L F FVGDNG GKTN+++A+ FLS + + R Sbjct: 3 LKKLSLINFKNIREENLEFRPGINCFVGDNGAGKTNVIDAVYFLSMCKSSLAMTDGQNMR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 GS FF + EG ++ + R + + L+ N + + L+ H+ + +V Sbjct: 63 HGS-DFFLLDGQYLTDEGRSESVVCAFAR--KGGKTLKRNG---KEYERLSDHVGLIPVV 116 Query: 127 ---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P+ + S + ERRR+L+ + +D + + ++ + ++ RNRLL + C Sbjct: 117 IVSPADTMLISDAADERRRYLNGFISQLDRAYLQALVRYNAVLGERNRLLKISRDEQMLC 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+ E G I+ R E+ L + Y + + +++L + D F L Sbjct: 177 I-YDRQLVEQGGIIHRKRSEIAALLEPEVARYYRHLSSDREQVTLE-YRSELNDTPFEEL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L R+ D ++ T G HR DL++ + +GS G+QK L+ + LA Sbjct: 235 -------LLKSREKDFVNGFTTAGIHRDDLVLHIGGYPLR-KYGSQGQQKSFLIALKLAQ 286 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVFDSL 358 L++ G PILLLD++ LD + L R+V D G QIF+T + +++ D Sbjct: 287 YALVAQAKGEKPILLLDDLFDKLDAGRVEQLIRLVGDDGFGQIFITDCNPTRLRTILDKT 346 Query: 359 NETAKFMRISN 369 + + N Sbjct: 347 GDDYSLFTVEN 357 >gi|218442160|ref|YP_002380489.1| recombination protein F [Cyanothece sp. PCC 7424] gi|226737786|sp|B7KID4|RECF_CYAP7 RecName: Full=DNA replication and repair protein recF gi|218174888|gb|ACK73621.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7424] Length = 384 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 88/369 (23%), Positives = 175/369 (47%), Gaps = 24/369 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + + FRNY ++ F++Q TI VG+N GK+N+LEA+ L+ + R + D+ Sbjct: 3 LKTVQLRSFRNYREQQVNFESQKTIIVGNNAQGKSNLLEAVELLATLKSHRVSRDRDLVL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ + A +E GLA++ + L R+V Q + + R +D L + + Sbjct: 63 EGA-TTGQILATLERAYGLAELGLILRVSGRRTVILNQ--EPLRRQLDFLGVLNAVQFSS 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------EGYFDS 180 +D + G RR ++D ++ ++P + + + ++++ RN LL E + Sbjct: 120 LDLD-LVRGSPESRRSWIDTLLVQLEPIYAHILSQYYQVLKQRNALLKKIRQQEEDSQNP 178 Query: 181 SWCSS-----------IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 S S ++Q+AE G ++ R ++ L+ L ++ + +L + Sbjct: 179 SLSSEQLSNDISQLKLWDSQLAETGSRVTRRRARVLERLTPLAQKWHANISGKTEQLEIQ 238 Query: 230 GFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + + + +++ + +K+ R + T++GPHR D I ++ +GS Sbjct: 239 YMPNVNWTEDEPMQVQQAFLEKIEKRRIAEQQLGTTVVGPHR-DEIEFIINQTPAKYYGS 297 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+Q+ +++ + LA LI G P+LLLD++ A LD ++N L + D Q +T Sbjct: 298 QGQQRTLVLALKLAELHLIEEVVGEPPLLLLDDVLAELDPHRQNQLLDAIED-RFQTLIT 356 Query: 349 GTDKSVFDS 357 T + F++ Sbjct: 357 TTHLNSFET 365 >gi|299141070|ref|ZP_07034208.1| RecF protein [Prevotella oris C735] gi|298578036|gb|EFI49904.1| RecF protein [Prevotella oris C735] Length = 366 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 32/366 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--- 66 L+I ++N + + F+G NGVGKTN+L+A+ +LS F R+++ + Sbjct: 6 LSILNYKNIREATISLSPKLNCFIGSNGVGKTNVLDAVHYLS----FCRSAFNPIDSQVI 61 Query: 67 IGSPSFF---STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + F + EG E +K T+ + + N R L++H+ + Sbjct: 62 MHNQDFLVLEGNYTTDEGEEEQIYCGMKRGTK-----KHFKRNKKEYR---RLSQHIGLI 113 Query: 124 WLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFD 179 LV PS + G S ERRR LD ++ D + + + + ++ RN LL E D Sbjct: 114 PLVFASPSDSVLIEGGSEERRRLLDLVISQYDHAYIEALSAYNKALQQRNALLKMEDEPD 173 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + E QMA G I R + L + + H +SL G+ Sbjct: 174 KALLEIWEEQMATNGEVIYQKRDTFVKRLVPVFQNIYSHISGGHETVSLNYVSHGQRGLL 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++ + R D +L G HR DL + D GS G+ K + + Sbjct: 234 LDTIQRD--------RYKDRAVGYSLHGVHRDDLEM-LLDGYQMKREGSQGQHKTYALAL 284 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358 LA + +T+ P+LLLD+I LD D+ + ++V G QIF+T T++ D + Sbjct: 285 KLAQFDFLRHTSNSTPLLLLDDIFDKLDADRVEQIVQLVGGEGFGQIFITDTNRDHLDRI 344 Query: 359 NETAKF 364 F Sbjct: 345 LANGDF 350 >gi|28492970|ref|NP_787131.1| recombination protein F [Tropheryma whipplei str. Twist] gi|28572178|ref|NP_788958.1| DNA replication and repair protein recF [Tropheryma whipplei TW08/27] gi|51316419|sp|Q83N51|RECF_TROWT RecName: Full=DNA replication and repair protein recF gi|51316420|sp|Q83NZ4|RECF_TROW8 RecName: Full=DNA replication and repair protein recF gi|28410309|emb|CAD66695.1| DNA replication and repair protein recF [Tropheryma whipplei TW08/27] gi|28476010|gb|AAO44100.1| recF protein [Tropheryma whipplei str. Twist] Length = 363 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 108/376 (28%), Positives = 169/376 (44%), Gaps = 59/376 (15%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M N + I +N+ FRNY + F + GDNG GKTN+ EAI FLS GF Sbjct: 1 MQNNL-ISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLS---GF---- 52 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRC-LQINDVVIRVVDELNK 118 GS + ++ E A+IS K++++ R+V + N I VD Sbjct: 53 -------GSHRTYKNQPLIKSGEQKAEISAKIQSKYGTRNVYIGISCNSNNILKVDGKPS 105 Query: 119 HLR-----ISWLVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMID----FERLMR 167 LR S ++ S + I G RR++LD ++ R R M+D ++R ++ Sbjct: 106 KLRDLVSVFSCVIFSPEDIDLVKGDPGHRRKYLDDIIC----RARPMMLDIYSAYDRTLK 161 Query: 168 GRNRLLTEGYFDSSWCSS-----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 RN LL F S C S ++ ELG++I AR ++ L+ I E+ K Sbjct: 162 QRNSLLKS--FRKSSCKSDLLDIWTQKLVELGLEIVNARKRLLKILNPKISEFYSK---- 215 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS--DLIVDYCDK 280 +S T L F QS L + + L R+++ TL GPHR D++++ C Sbjct: 216 LAGVSSTAEL---FCQSSDCLIDTF--DLLRDREIEEGV--TLAGPHRDNVDILLNSCPA 268 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA---PILLLDEISAHLDEDKRNALFRI 337 + S GE + + + L+ L+ T P+++LD++ AHLD ++ L + Sbjct: 269 R---SQSSQGESWTLALSMKLSLIELMRETKRLYDPDPVVILDDVFAHLDSYRKQKLAQE 325 Query: 338 VTDIGSQIFMTGTDKS 353 V Q +T TD S Sbjct: 326 VFSY-EQTIVTTTDNS 340 >gi|197286952|ref|YP_002152824.1| recombination protein F [Proteus mirabilis HI4320] gi|227354807|ref|ZP_03839224.1| recombination protein F [Proteus mirabilis ATCC 29906] gi|132248|sp|P22839|RECF_PROMI RecName: Full=DNA replication and repair protein recF gi|226737819|sp|B4F0U7|RECF_PROMH RecName: Full=DNA replication and repair protein recF gi|150880|gb|AAA83960.1| putative [Proteus mirabilis] gi|194684439|emb|CAR46163.1| dna replication and repair protein [Proteus mirabilis HI4320] gi|227165125|gb|EEI49956.1| recombination protein F [Proteus mirabilis ATCC 29906] Length = 362 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 161/364 (44%), Gaps = 18/364 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I FRN L VG NG GKT+ILEAI L GR FR A V + Sbjct: 6 LLIRHFRNIEQADLPLADGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSAQANRVIQHDE 65 Query: 70 PSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 +F R+ G+ E SI L ++D ++I+ + EL K L + + P Sbjct: 66 NAFI-LHGRLSGLDEESRGYSIGL-SKDREGNSTVRIDGSDGHKIAELAKLLPMQLITPE 123 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI-- 186 + +G RR F+D F +PR D +R+++ RN L + SS+ + Sbjct: 124 GFTLLNGGPKYRRAFIDWGCFHNEPRFFAAWSDLKRVLKQRNAALRQA---SSYRQLLPW 180 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E ++ I E Q P L ++ F G +D+ + + Sbjct: 181 DKELILLTEQISQWRAEYTEDIAKDIEETCQL-FLPEFTLKVS-FQRG-WDK-----ETD 232 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA+ L + D + T +G H++DL + + S G+ K+++ + LA Sbjct: 233 YAQLLERQFERDKVLSYTSLGAHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQGEY 291 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 + G + LLD+ ++ LD ++R L + +Q+F++ T V D L+ ++ Sbjct: 292 FTRKNGQRCLYLLDDFASELDANRRQLLAERLKSTQAQVFVSAITSGQVKDMLDVNSRLF 351 Query: 366 RISN 369 + + Sbjct: 352 SVEH 355 >gi|288800759|ref|ZP_06406216.1| RecF protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332220|gb|EFC70701.1| RecF protein [Prevotella sp. oral taxon 299 str. F0039] Length = 369 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 92/371 (24%), Positives = 161/371 (43%), Gaps = 36/371 (9%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI LN ++N + L + F+G NGVGKTN+L+A+ +LS R + V Sbjct: 5 KITLLN---YKNIEDITLDLSPKMNCFIGHNGVGKTNMLDAVYYLSFCRSSSNTVDSQVM 61 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDEL 116 + FF +EGL E D+ + C + N + + + Sbjct: 62 -MHDKDFFV-------LEGL----YTNEANDEELIYCGMKRGSKKHFKRNKKEYKRLSQH 109 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TE 175 + + ++ PS + G S +RRRFLD ++ +D + ++ + + ++ RN LL E Sbjct: 110 IGFIPLVFVSPSDVALIEGPSEDRRRFLDIVISQLDVTYMEALLRYSKALQQRNALLKQE 169 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 D++ S E +MAE G + R+ + + + Q+ + +SL Sbjct: 170 NEPDNTLISLFEEEMAEQGTIVYQKRLAFVENFIPVFQQIYQQISGGKETVSLNYI---- 225 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 S C + + + + R D +L G HR DL + + GS G+ K Sbjct: 226 ---SHCQ-RGDLLEVIQRDRFKDRAVGYSLHGIHRDDLEMLLGGYQMK-KEGSQGQNKTF 280 Query: 296 LVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS 353 ++ + LA + T + P+LLLD+I LD ++ + +V D QIF+T T++ Sbjct: 281 VLALKLAQFDFLKRTASKTTPLLLLDDIFDKLDANRVERIVNLVANDSYGQIFITDTNRD 340 Query: 354 VFDSLNETAKF 364 DS+ + F Sbjct: 341 HLDSILKMGNF 351 >gi|218129656|ref|ZP_03458460.1| hypothetical protein BACEGG_01235 [Bacteroides eggerthii DSM 20697] gi|317477510|ref|ZP_07936735.1| DNA replication and repair protein RecF [Bacteroides eggerthii 1_2_48FAA] gi|217988386|gb|EEC54709.1| hypothetical protein BACEGG_01235 [Bacteroides eggerthii DSM 20697] gi|316906311|gb|EFV28040.1| DNA replication and repair protein RecF [Bacteroides eggerthii 1_2_48FAA] Length = 378 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 89/355 (25%), Positives = 150/355 (42%), Gaps = 16/355 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + R Sbjct: 3 LKHISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E +G + I ++ R + + + R+ D + L + + Sbjct: 63 -HDADFFVIQGFYEASDGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVMV 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184 P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 119 SPADSALINGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKNEMPVEEELFL 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 E MA+ G + R E I + + + K+ L + LK Sbjct: 179 VWEEMMAQAGEVVFRKREEFIKEFIPIFQSFYSFISQDKEKVGLIYDSHARDASLLEVLK 238 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 239 E--------SRTRDQIMGFSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQF 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 290 DFLKRTGATVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRI 344 >gi|229818506|ref|YP_002880032.1| DNA replication and repair protein RecF [Beutenbergia cavernae DSM 12333] gi|259563356|sp|C5BUP6|RECF_BEUC1 RecName: Full=DNA replication and repair protein recF gi|229564419|gb|ACQ78270.1| DNA replication and repair protein RecF [Beutenbergia cavernae DSM 12333] Length = 397 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 161/373 (43%), Gaps = 38/373 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +++FR+YA L + + T FVG NG GKTN++EAI +L R + A + R G+ Sbjct: 6 LALTDFRSYADLVIGLEPGITAFVGPNGQGKTNLVEAIGYLGTFSSHRVSGDAALVRWGA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 R + + ++LE R+ R +++ + V E R P Sbjct: 66 E---RAVVRAKVVRRARPTLVELEIVAGRANRA-RVDRSPVSRVREAAGIARSVIFAPED 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------EGYFDSS 181 + G RRRFLD ++ + PR ++ER++R R LL G + + Sbjct: 122 LALVKGDPDGRRRFLDDLLVQLSPRLAGVRSEYERVLRQRTALLKSAGPARRRSGDGEPA 181 Query: 182 WCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT---GFLDGK 235 ++ + +A G ++ ARV ++ L + ++ + + ++ + + Sbjct: 182 ALRTLDVWDGHLARAGAELVAARVRLVQDLRPHVGATYEQVSAAQSEARISYRASVEEAR 241 Query: 236 FDQSFCALKEEYAKK-----LFDGRKMDSMSR-RT--------LIGPHRSDLIVDYCDKA 281 D + + E + L + R +++M+R RT L+GPHR DL++ D Sbjct: 242 PDDAPTEVVESVETELTRADLVEARLLEAMARLRTREIERGVSLVGPHRDDLVLTLADMP 301 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLI----SNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + S GE + + LA L+ G P+L+LD++ A LD +R L I Sbjct: 302 AK-GYASHGESWSYALALRLASYALLRDDGEAGGGGEPVLVLDDVFAELDARRRTRLASI 360 Query: 338 VTDIGSQIFMTGT 350 V Q+ +T Sbjct: 361 VAS-AEQVLVTAA 372 >gi|21229481|ref|NP_635398.1| recombination protein F [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766355|ref|YP_241117.1| recombination protein F [Xanthomonas campestris pv. campestris str. 8004] gi|25453248|sp|Q8PEH3|RECF_XANCP RecName: Full=DNA replication and repair protein recF gi|81307651|sp|Q4V0S6|RECF_XANC8 RecName: Full=DNA replication and repair protein recF gi|21110941|gb|AAM39322.1| DNA replication and repair RecF protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571687|gb|AAY47097.1| DNA replication and repair RecF protein [Xanthomonas campestris pv. campestris str. 8004] Length = 368 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 151/367 (41%), Gaps = 20/367 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ + + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLR 121 R G F VE E D + + R +++ + + L L Sbjct: 61 IRQGGQD-LEIF--VEWRERAGDSTERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALA 117 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 118 VVTFEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQGA-QPQ 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + + ++AE G + R++ + L ++ V P + LS F G Sbjct: 177 MLDAWDHELAESGETLTSRRLQYLERLQERLVP-VATAIAPSLGLSALTFAPGWRRHEVS 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGI 299 A L R+ D + T GPHR+D + D + S G+ K+ + Sbjct: 236 -----LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDAL---SRGQAKLTALAC 287 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA A ++ G PI+ LD++ + LD + + + + +Q+ +T T+ + L Sbjct: 288 LLAQAEDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATE--LPPGLA 345 Query: 360 ETAKFMR 366 + K +R Sbjct: 346 DAGKTLR 352 >gi|325915699|ref|ZP_08178004.1| DNA replication and repair protein RecF [Xanthomonas vesicatoria ATCC 35937] gi|325538116|gb|EGD09807.1| DNA replication and repair protein RecF [Xanthomonas vesicatoria ATCC 35937] Length = 344 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 76/321 (23%), Positives = 137/321 (42%), Gaps = 8/321 (2%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90 + GDNG GKT++LEA+ ++ GR FR + + G+ EG + S Sbjct: 3 LLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGASDLEVFVEWREGTGEAGERSR 62 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150 + R +++ + + L L + P + SG RRRFLD +F Sbjct: 63 RAGLRHTGQEWTGRLDGEDVAQLGSLCAALAVITFEPGSHVLISGGGEPRRRFLDWGLFH 122 Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210 ++P + R ++ RN LL +G + + ++AE G + R+ + L Sbjct: 123 VEPDFLALWRRYARALKQRNALLKQGA-QPRMLDAWDHELAESGETLTSRRLRYLERLQE 181 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270 ++ V P + LS F G + + +L A L R+ D + T GPHR Sbjct: 182 RLIP-VATAIAPSLGLSALEFAPG-WKRHEVSL----ADALLLARERDRQNGYTSQGPHR 235 Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 +D + D S G+ K+ + LA A ++ G P++ LD++ + LD Sbjct: 236 ADWAPRF-DALPGKDALSRGQAKLTALACLLAQAEDFAHERGEWPVIALDDLGSELDRHH 294 Query: 331 RNALFRIVTDIGSQIFMTGTD 351 + ++ + + +Q+ +T T+ Sbjct: 295 QASVLQRLAAAPTQVLITATE 315 >gi|312130769|ref|YP_003998109.1| DNA replication and repair protein recf [Leadbetterella byssophila DSM 17132] gi|311907315|gb|ADQ17756.1| DNA replication and repair protein RecF [Leadbetterella byssophila DSM 17132] Length = 354 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 157/351 (44%), Gaps = 35/351 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRNY F VG NG GKTN+L+A+ FL+ + S S Sbjct: 6 LRLYNFRNYEERFFTFSPTLNCIVGKNGSGKTNLLDAVYFLALSK-----SSIQTQDSLS 60 Query: 70 PSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 F F+ +EG + I I L ++V + V ++ D + K+ + L P+ Sbjct: 61 IRFEEDFSSLEGAFSNQNIIGIHLLRNGKKTVTS--NHKVYEKLSDHIGKY-PVVLLAPN 117 Query: 129 -MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWC 183 D I G + RR+ D ++ +DP + + + + + + RN LL + Y D Sbjct: 118 DTDYIRDG-AETRRKLFDGILSQVDPEYLQTYLKYNKTLDQRNSLLKQFAEQNYVDKDLL 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIM-EYVQ-KENFPHIKLSLTGFLDGKFDQSFC 241 S + LG I R I + S L +YV E +++ + L ++++F Sbjct: 177 SIYTESLLVLGKAIFEKRKSFIESFSPLFKDQYVHLSEGREQVEIQYSSDL---WEENF- 232 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +E++ K L D ++RT +G H+ D + D + GS G++K ++ I L Sbjct: 233 --EEQFQKNL----NRDLSAQRTTMGVHKDDFLF-LMDGVLVKKFGSQGQRKSFVMAIKL 285 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS----QIFMT 348 A + + PILLLD+I LD D+R + R++ + S QIF+T Sbjct: 286 AQFQCLELEKETKPILLLDDIFDKLD-DRR--ILRLIEMMNSGAFGQIFLT 333 >gi|295103717|emb|CBL01261.1| recF protein [Faecalibacterium prausnitzii SL3/3] Length = 373 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 90/365 (24%), Positives = 156/365 (42%), Gaps = 34/365 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +RN + RL + T+ G+NG GKTN+LEAI L+ G+ FR A++ R G Sbjct: 6 LEVQNYRNICAARLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAELVRRGE 65 Query: 70 PSFFSTFA-----RVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLR 121 +F A R EG E I++ + R +N + L Sbjct: 66 -AFAVLEADTQRDRPEGCEPAEPAHIRMTVGTPEAAKPGRYAAVNGAAPKRAAALAGSFP 124 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 P + G RR+FLD + + P + + R+++ +N LL Sbjct: 125 AVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLASYRRYVRVLQQKNALLRH------ 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 S Q K + +E++N + E +Q+ ++KL + S Sbjct: 179 ---SANGQERPYAEKRTL--LEVLNTELAAQGEALQQRRREYLKLLAPRACANYAELSHG 233 Query: 242 A--LKEEYAKKLFDG--------RKMDSM-SRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 A + YA + G R+ + + + ++L G HR DL + D+ + + S G Sbjct: 234 AERMSIRYAAQFAPGGLAALLRQRQEEELRAGQSLCGIHREDLELLLDDQPARV-YASQG 292 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ V++ + +A A + TG P+LLLD++ + LDE ++ L + + Q F+T Sbjct: 293 QQRSVVLSLKMAEAAAAAQITGEHPVLLLDDVLSELDEGRKQYLLTCMKE--KQTFVTSC 350 Query: 351 DKSVF 355 D + F Sbjct: 351 DDTDF 355 >gi|198275605|ref|ZP_03208136.1| hypothetical protein BACPLE_01774 [Bacteroides plebeius DSM 17135] gi|198271234|gb|EDY95504.1| hypothetical protein BACPLE_01774 [Bacteroides plebeius DSM 17135] Length = 396 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 159/361 (44%), Gaps = 27/361 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N L F + +G NG+GKTN+++A+ +LS + + R Sbjct: 26 LKRISILNYKNLEQAELAFSRKMNCIIGKNGMGKTNLMDAVYYLSFCKSATNPIDSQNIR 85 Query: 67 IGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E +G ++ L+ R + + + + L+ H+ + L Sbjct: 86 -HEQDFFVLQGFYETEDGDPEEVYCGLKRRQKKQFKRNK------KEYTRLSDHIGLIPL 138 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 V P+ + +G S ERRRF+D ++ D + +I + + + RN LL E D Sbjct: 139 VMVSPADTLLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALVQRNTLLKAELEPDEE 198 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQS 239 + E MA G + R + I+ + Y +N +KLS QS Sbjct: 199 LMNVWEEMMASTGEVVFRKRQQFIDEFIPIFQSYYSYISQNQEEVKLSY---------QS 249 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 A + A L R+ D + +L G H+ DLI+ + + GS G+ K L+ + Sbjct: 250 HAAEGDLLA-LLRANRQRDRVMGYSLKGIHKDDLIMQLGEFPMK-REGSQGQNKTYLIAL 307 Query: 300 FLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDS 357 LA + T +G P++LLD+I LD + + ++V D QIF+T T++ D Sbjct: 308 KLAQFEFLKRTGSGTTPLILLDDIFDKLDALRVEQIVKLVAGDNFGQIFITDTNRDHLDR 367 Query: 358 L 358 + Sbjct: 368 I 368 >gi|328954617|ref|YP_004371950.1| DNA replication and repair protein RecF [Coriobacterium glomerans PW2] gi|328454941|gb|AEB06135.1| DNA replication and repair protein RecF [Coriobacterium glomerans PW2] Length = 375 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 88/392 (22%), Positives = 165/392 (42%), Gaps = 57/392 (14%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 + L + ++R++ L D T+ G N VGKTN++EA+ L+ G+ FR+AS +++ R Sbjct: 6 RSLRLRDYRSFERFSLDLDPGTTVLSGRNAVGKTNLIEALQLLTFGQSFRKASPSELIRD 65 Query: 68 GSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV---DELNKH 119 G+ S R + +A + +R+ + R I V+ V+ D L+ Sbjct: 66 GAERAVLDLNLSGGGRDIDLGLVATAGKRAFSRNGKPCRASSIRGVMPSVLFCPDHLDMV 125 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 R + + RR LD + R+ + + + R++ RN LL + Sbjct: 126 KRSAGV--------------RRGALDDFGTQLSARYAQLVGSYGRIVEQRNALLRDVALS 171 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + + E G + R+ ++ L + + H ++ +D + S Sbjct: 172 DGLLDAWDDALIETGCALIAHRISLLARLRAAMRRI-------HASIAPGEQMDVGYRAS 224 Query: 240 FCA-------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 C L+ Y L R + +L+GPHR ++ A T+A Sbjct: 225 ICPTEDLLTERADRATLERRYRGALAAARPDEIRRCVSLMGPHRDEI-------AFTVAG 277 Query: 287 ------GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 S G+Q+ +++ +A + G P+LLLD++ + LDE +R+A+ V + Sbjct: 278 RDARSFASQGQQRTLVLSWKIAEVDVACEILGAPPLLLLDDVMSELDEPRRSAVMEFVEE 337 Query: 341 IGSQIFMTGTDKSVF-DSLNETAKFMRISNHQ 371 G Q ++ T+ F S+ AK + I N + Sbjct: 338 -GIQTVISTTNLGYFSSSMLRRAKVVTIGNER 368 >gi|284041474|ref|YP_003391814.1| DNA replication and repair protein RecF [Conexibacter woesei DSM 14684] gi|283945695|gb|ADB48439.1| DNA replication and repair protein RecF [Conexibacter woesei DSM 14684] Length = 370 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 158/357 (44%), Gaps = 34/357 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + FR+Y + + A T+ G NG GKTN+L+A+ F GR R + ++ Sbjct: 1 MRIVRLALRNFRSYPTAEVELGAGLTVVSGRNGAGKTNLLDALYFGCTGRSARTTNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G E +G ++S+ E+ + R + V R++D + L +S Sbjct: 61 VRFGE-QVTRVVVMTEADDGAHELSVAFESGQPK--RLMADGVRVERLLDVPGRPL-VSV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + G RR +D++V A+ P + + + RN L+ + + Sbjct: 117 FLPDRLELVKGTPSLRRAHIDQVVAALWPARAATRRAYAQALAQRNALVARIRAGGASAA 176 Query: 185 SIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF- 240 S+ A ++A GV + R I ++ + F I L LDG ++ Sbjct: 177 SLPAWDRELARHGVALMADRAAAIESVQT---------RFGTIAGELG--LDGDPAVAYR 225 Query: 241 --------CALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGE 291 L+EE A+ R + R T GPHR DL + + + A+GS G+ Sbjct: 226 PRSRAADAGGLEEELAE-----RHASDLERGFTQHGPHRDDLALTRERRELR-AYGSQGQ 279 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 Q++ L+ + LA I+ T P++LLD++ + LD ++R L ++ +G + T Sbjct: 280 QRLTLLALLLAEREAIAATRDAVPVMLLDDVMSELDRERRGRLVELLRGVGQSVITT 336 >gi|212712614|ref|ZP_03320742.1| hypothetical protein PROVALCAL_03709 [Providencia alcalifaciens DSM 30120] gi|212684830|gb|EEB44358.1| hypothetical protein PROVALCAL_03709 [Providencia alcalifaciens DSM 30120] Length = 364 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 153/367 (41%), Gaps = 24/367 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L +G NG GKT+ILEAI L GR FR V R Sbjct: 6 LLIRDFRNIEDADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRVIRHDQ 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F + + + + D VR I+ + EL K L + + P Sbjct: 66 EQFILHGKLGHPDTERKVLSLGLSKNREGDSKVR---IDGTDGHKIAELAKLLPMQLITP 122 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCS 184 + +G RR F+D F + D +RL++ RN R +T W Sbjct: 123 EGFTLLNGGPKYRRAFIDWGCFHNEALFFSTWSDLKRLLKQRNAALRQVTRYEQIRHW-- 180 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A + +I+ R E I ++ I E K+ P LS++ F G +D+ Sbjct: 181 --DQQLAPISEQISQWRGEYIAGIAENI-EQTCKQFLPEFSLSVS-FQRG-WDKEI---- 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303 +Y+++L + D T GPH++DL + I + S G+ K+++ + LA Sbjct: 232 -DYSEQLERQFERDRALTYTSSGPHKADLRIRA--NGIPVEDMLSRGQLKLLMCALRLAQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + +G + LLD+ ++ LD +R L + +Q+F++ T V D ++ + Sbjct: 289 GEYFTQQSGQQCLYLLDDFASELDSGRRQLLAARLKATQAQVFVSAITPAQVNDMIDANS 348 Query: 363 KFMRISN 369 K + Sbjct: 349 KMFSVEQ 355 >gi|255020211|ref|ZP_05292280.1| DNA recombination and repair protein RecF [Acidithiobacillus caldus ATCC 51756] gi|254970353|gb|EET27846.1| DNA recombination and repair protein RecF [Acidithiobacillus caldus ATCC 51756] Length = 357 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 95/380 (25%), Positives = 164/380 (43%), Gaps = 56/380 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I R ++L + VG NG GK+ +LEA+ L G+ +RR + Sbjct: 1 MPVAVLEIRNLRCIEHMQLAAGPRWNWLVGANGAGKSTVLEALHLLGLGQSWRRGPR-QL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS F + R E + GL D + + +R +R +HLR W Sbjct: 60 IRDGSSCFLLSVLRNEDL-GLNDRIVLEQNGGERQMRF-------------AGEHLRSQW 105 Query: 125 ----LVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRR---RMIDFERLMRGRNR 171 L+P +G + +RRR LD + I RHR + + RL+ RN Sbjct: 106 ALLELLPIQAIHSGNSEFIAGSADDRRRQLD---WGIYRRHREYGDHLRQYRRLLAQRNA 162 Query: 172 LL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSL 228 L ++G+ + W E +A G ++ R I L + + ++ + I+L L Sbjct: 163 WLRSQGHKEDPW----EHLLAGAGELLHEYRSREIAYLQEGLCHFWKERTGSTSEIRLHL 218 Query: 229 -TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI--VDYCDKAITIA 285 +G+ DG +A+ L + R D+ + T GPHR++++ VD A +++ Sbjct: 219 QSGWRDGM----------RFAEVLREDRSSDAETGFTRSGPHRANILFRVDGRSAADSLS 268 Query: 286 HGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 G Q L F LA + I ++ P++L+D+ +A LD R + + +G Q Sbjct: 269 RG----QLRTLGNCFRLAQLQAIKDSGLELPVVLIDDFAAELDPAGRLWWRQQLDALGVQ 324 Query: 345 IFMTGTDKSVFDSLNETAKF 364 +F GT+ + E ++ Sbjct: 325 VFAAGTEAAALPMNAEDCQW 344 >gi|332667472|ref|YP_004450260.1| DNA replication and repair protein recF [Haliscomenobacter hydrossis DSM 1100] gi|332336286|gb|AEE53387.1| DNA replication and repair protein recF [Haliscomenobacter hydrossis DSM 1100] Length = 365 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 24/350 (6%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 ++ F+NY + +L + VG+NG+GKTN+L+AI +L + S+ ++T Sbjct: 8 LANFKNYENQKLDCSPRLNCLVGNNGMGKTNLLDAIYYLCMAK-----SHFNLTDNAIAR 62 Query: 72 FFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130 F R+EG L K+ + R ++ L+ NDV + E L + ++ P Sbjct: 63 HHEAFFRLEGHFVLHGKKEKIVAKVMPRKLKELERNDVAYAKLAEHIGLLPVVFIGPDDI 122 Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190 ++ S ERRRFLD + +D R+ +I + +++ RN LL S S+ Sbjct: 123 QLIREGSEERRRFLDNTLSQLDQRYLYELIAYNKVLHQRNALLKNLAERSGGNLSL---- 178 Query: 191 AELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA-----LK 244 +++ ++I+ AL L + F I S ++ G+ ++ L+ Sbjct: 179 ------LDVYDEQLIDPALYVLEQRAKFAQKFTAIFQSTHQYISGRGEEVQLTYESQLLE 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L + R+ D +RT G HR DL+ + + GS G+ K L+ + LA Sbjct: 233 NDLGDLLANSRQRDLALQRTTKGIHRDDLVFSLGEHPLK-KFGSQGQLKSFLLALKLAQY 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS 353 ++ PILLLD++ LD + L R++T+ QIF+T T ++ Sbjct: 292 EMLRQNKAVPPILLLDDLFDKLDAQRVTHLLRLLTEGQFGQIFITDTHET 341 >gi|323493783|ref|ZP_08098901.1| recombination protein F [Vibrio brasiliensis LMG 20546] gi|323311917|gb|EGA65063.1| recombination protein F [Vibrio brasiliensis LMG 20546] Length = 360 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 84/365 (23%), Positives = 155/365 (42%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + V + Sbjct: 6 LIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNDC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 NELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSS 185 + + RR F+D VF + F+RL + RN LL Y + S+ Sbjct: 121 EGFDLLTDGPKHRRSFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R I + E Q P ++ L + D + + E Sbjct: 179 -DQEMARLAENISQWRATYIEQMKVKAEEICQA-FLPEFEIQLKYYRGWDKDTPYQDILE 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 + ++ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 237 KNFER-------DQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + + G+Q+F++ TD + D +E + Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDSQIADMRDENGRM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|78187987|ref|YP_378325.1| RecF protein [Chlorobium chlorochromatii CaD3] gi|78170186|gb|ABB27282.1| RecF protein [Chlorobium chlorochromatii CaD3] Length = 364 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 154/354 (43%), Gaps = 24/354 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K++ S FRN+ SL TI G NG GKT++LE I + + +G A ++ Sbjct: 1 MKLQRTIFSGFRNHTSLLFEPSEGVTIIYGANGSGKTSLLEGIHYGALTKGLLGAPDSEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL-RIS 123 F T A L+D +I + + + V + V + H+ RI Sbjct: 61 LS------FDTEAFTLDSHFLSDSNIPIHVLVTYQLEGEKQVIVDRQEVKPFSSHIGRIP 114 Query: 124 WLV--PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + P + SG ERRRFLD + +D R+ R+I + R+++ RN LL + S Sbjct: 115 TITFSPYEISLVSGPPAERRRFLDSAISQLDHRYLDRLITYRRILQQRNALLAQ--LSSG 172 Query: 182 WCSS------IEAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFPHIKLSLTGF- 231 S+ Q+AEL + R+ + + S Y + K P I T Sbjct: 173 EKSNRNTLPLWTTQLAELSAWLVERRLLFLTSFSPYFQHYYRYIIKGEEPSINYRCTSCP 232 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 L G + +F L + + ++ D + +TL G HR D++ +K I + S G+ Sbjct: 233 LHG--NTTFQELYQLFLQRYSDIEAQEIQRGQTLFGAHRDDVLFFLNEKEIK-RYASQGQ 289 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 + L+ + ++ A L ++ P+ L D++ + LD + + ++ + G I Sbjct: 290 LRSFLIALKISQAHLFADHLHEQPMCLFDDLFSELDGGRIEQILALLKECGQTI 343 >gi|322513483|ref|ZP_08066593.1| recombination protein F [Actinobacillus ureae ATCC 25976] gi|322120702|gb|EFX92586.1| recombination protein F [Actinobacillus ureae ATCC 25976] Length = 360 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 87/355 (24%), Positives = 154/355 (43%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN S+ L VG NG GKT++LEAI +L GR F+ + + Sbjct: 6 LIINNFRNLQSIDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F R++ EG S+ ++ + L+IN + +L L + + P Sbjct: 66 EDFV-LHGRID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + +G RR FLD +F + +RL++ RN L + Y + W Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSYWANLKRLLKQRNAALHQVRSYVELKPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ +L ++ R AL I + Q P +++ ++ F Q + + Sbjct: 178 DIELVKLAETVSQMRASYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EQGAD 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305 YA+ L G + D + T+IGP ++D + + + S G+ K+++ + LA Sbjct: 230 YAEILAQGFERDKATGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGE 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T K D LN+ Sbjct: 288 YLVAQKERQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITK---DQLNQ 339 >gi|154486349|ref|ZP_02027756.1| hypothetical protein BIFADO_00158 [Bifidobacterium adolescentis L2-32] gi|154084212|gb|EDN83257.1| hypothetical protein BIFADO_00158 [Bifidobacterium adolescentis L2-32] Length = 403 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 90/367 (24%), Positives = 149/367 (40%), Gaps = 65/367 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R++ L F+ I G NG+GKTNI+EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWDHCVLDFEPGINILQGSNGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-----IRVVDELNKH 119 G PS +++ D R +I RV +++ Sbjct: 61 VEKGHPS----------------ATVRANIEDAGEQRTYEITIAARGANRARVDGGKSQY 104 Query: 120 LR-ISWLVPSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 +R I LVPS+ R+ SG RR FL++ + PR+ + + F + + R L Sbjct: 105 MRDIVGLVPSVSFTPEDQRLVSGDPATRRNFLNQAASLLLPRYAQSLQQFTHVAKQRAAL 164 Query: 173 LTE---------GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 L + Y + S +E Q LGV++ R ++I L +E Sbjct: 165 LKQLSDGSGIDPEYGRQAVLSGLEVWTGQFIALGVQLTKDRNDVIGLL---------REP 215 Query: 221 FPHIKLSLTG-------FLDGKFDQSF-----CALKEEYAKKLFDGRKMDSMSRRTLIGP 268 F I SL G + FD+ A + ++++ G + + LIGP Sbjct: 216 FTRIYASLAGEEEQADLVYEPSFDEVLLFDEPAAEISRHFQRIYPG---EVARGQNLIGP 272 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 R DL + D S GE + + + +A ++S PI++LD++ A LDE Sbjct: 273 QRDDLTLRLNDMPAR-EFASNGEMWTMALALKMALYEVVSAQRDVKPIVILDDVFAQLDE 331 Query: 329 DKRNALF 335 +R + Sbjct: 332 SRRGQIL 338 >gi|296537347|ref|ZP_06899213.1| recombination protein F [Roseomonas cervicalis ATCC 49957] gi|296262327|gb|EFH09086.1| recombination protein F [Roseomonas cervicalis ATCC 49957] Length = 126 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 44/100 (44%), Positives = 63/100 (63%) Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR+DL + K I STGEQK +LV LA A L+++ GFAP+LLLDE++AHLD Sbjct: 11 HRTDLRLVLLPKQIPAELCSTGEQKALLVSTVLAQAALVASHRGFAPLLLLDEVAAHLDP 70 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 ++R ALF + + +Q F+TGT+++ F L A+ S Sbjct: 71 ERRAALFAALDALPAQCFLTGTEEAPFAPLRGHAQLFAAS 110 >gi|296125983|ref|YP_003633235.1| DNA replication and repair protein RecF [Brachyspira murdochii DSM 12563] gi|296017799|gb|ADG71036.1| DNA replication and repair protein RecF [Brachyspira murdochii DSM 12563] Length = 355 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 90/368 (24%), Positives = 164/368 (44%), Gaps = 23/368 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I FRNY F + + G NG GKTNILEA+ L G FR ++ + Sbjct: 3 LKELTIRSFRNYNENVFEFSDKINVLYGHNGCGKTNILEAVYMLGNGVSFRTRLDRELVK 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV-VDELNKHLRISWL 125 G+ ++ F R E + +E + V+ + I+ + D + + L + +L Sbjct: 63 NGNDNY---FLRGVFREDELNYDTNIEIAYQKKVKKVFIDKKEVSSRKDLIGRILYVIFL 119 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSS 181 D + + + RR + + ++ I + +I + +L++ RN L+ E Y +S Sbjct: 120 PNDTDLVIAEPKL-RRDYFNMLISTISLEYLTALIKYNKLLKMRNVCLSTKPNEAYIYNS 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + + +A K + + +N + I EN IK T ++ F+++ Sbjct: 179 DIAKLSIYIAGENKKYSSILEDKMNEIYKNIF---NDENPYAIKYQST--IEDIFNEN-- 231 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 EY KKL R T G HR++ Y + +++ S GE+++ + + L Sbjct: 232 ----EYVKKLESTLNEQIRMRTTYFGIHRAEYQFFYKE-SLSKKFSSQGEKRMFTLIMKL 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A +++S +PILL+D+ LD +R+ + + +G Q+F+T T+K + E Sbjct: 287 ASEKILSEYRRKSPILLIDDAMLELDNTRRDNILEYIKTLG-QVFITVTEKEKVKNF-EN 344 Query: 362 AKFMRISN 369 K I N Sbjct: 345 GKVFDIPN 352 >gi|184199649|ref|YP_001853856.1| DNA replication and repair protein RecF [Kocuria rhizophila DC2201] gi|183579879|dbj|BAG28350.1| DNA replication and repair protein RecF [Kocuria rhizophila DC2201] Length = 474 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 93/340 (27%), Positives = 143/340 (42%), Gaps = 34/340 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +FR YA L L T+FVG NGVGKTNI+EA+ + + G R S Sbjct: 3 VDHLSLLDFRTYAGLDLALTPGLTVFVGPNGVGKTNIVEAVDWAA-TLGSHRVS------ 55 Query: 67 IGSPSFFSTFA-----RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 G+ +T A R+ G ++ E R+ R +R + L L Sbjct: 56 -GNTPLIATGAERAIVRLRVNRGGQRTVLEHELNATRANRVRLNRAAPVRARESLGI-LH 113 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEG 176 P + G RRRFLD + A+ P D+ER +R RN LL + G Sbjct: 114 TVLFSPEDLTLVKGDPSHRRRFLDDLATAMRPVLSAARSDYERALRQRNALLKSTRRSHG 173 Query: 177 YFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSL--TG 230 DS + + Q+A G + AR++++ AL + Q+ E H+ L + Sbjct: 174 LSDSDRATLAVWNDQLARAGAAVMAARLQLLKALEPEVDRAYQQLTEGPKHVTLEYESSS 233 Query: 231 FLDGKFDQ-----SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT-- 283 G Q S L E + + + TL+GPHR DL++ D Sbjct: 234 VAPGAEQQALQHFSVADLHELMMQAFERMERQERERGITLVGPHRDDLVIHLGDTPAKGY 293 Query: 284 IAHGSTGEQKVVL-VGIFLAHARLISNTTGFAPILLLDEI 322 +HG T + L +G + H + G AP+L+LD++ Sbjct: 294 ASHGETWSTALALRLGSWYVHL-ADDPSPGAAPVLILDDV 332 >gi|13959702|sp|O83049|RECF_TREPA RecName: Full=DNA replication and repair protein recF Length = 352 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/341 (24%), Positives = 154/341 (45%), Gaps = 28/341 (8%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN A + + FVG+NG GKTNILE + + G FR TR S ++ Sbjct: 6 FRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFR-------TRTES-ELYA 57 Query: 75 TFA-----RVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 T A RV+ M G ++++ +++ + + ++ N IR EL + + Sbjct: 58 THARSNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELISSIPCILFFHN 115 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 G RR FLD+ + +P + + + L + +NR + E +++ Sbjct: 116 DLDFVVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEK--RVQLLDALDT 173 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 Q+A +G + R +++ + + +Y ++ + +++ + D S EE Sbjct: 174 QIATVGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIE---YKPSWSDSSV----EEI 226 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 L+ RK D ++ GPHR D I +A+ I STG++++V + + ++ A Sbjct: 227 VHSLYKRRKHDLAMGMSMSGPHR-DKIHFTRSQALFIPQASTGQRRLVSLVLRMSQAVFY 285 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + TG P+LL+D++ LD +KR F + Q+F T Sbjct: 286 TGVTGKLPVLLMDDVLLELDPEKRER-FMMSLPPYDQLFCT 325 >gi|293391839|ref|ZP_06636173.1| DNA replication and repair protein RecF [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952373|gb|EFE02492.1| DNA replication and repair protein RecF [Aggregatibacter actinomycetemcomitans D7S-1] Length = 358 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 85/348 (24%), Positives = 150/348 (43%), Gaps = 20/348 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN ++ L D VG+NG GKT++LEAI +L GR F+ A V Sbjct: 1 MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + ++ + + V+ IN + +L L + Sbjct: 61 ISYDQPH-FTLFGQIQEQRHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSW 182 + P + +G RR FLD +F RL++ RN L T Y S Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVAFYNLWASLNRLLKQRNAALQPTSAY---SQ 173 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + ++ +L +++ R + AL I E + P + +S++ F Q + Sbjct: 174 MKIWDVELVKLAEQVSQLRADYALALQPEI-EQTCRLFLPELDISVS------FHQGWE- 225 Query: 243 LKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 KE+Y +L + + D T+ GP ++D + S G+ K+++ + L Sbjct: 226 -KEQYYAELLERNFERDRALGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRL 283 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 A + I L+D+ ++ LD+ KR L + + GSQ+F+T Sbjct: 284 AQGEHLMRQKQRHCIFLIDDFASELDQTKRRLLAERLQNSGSQVFVTA 331 >gi|255037634|ref|YP_003088255.1| DNA replication and repair protein RecF [Dyadobacter fermentans DSM 18053] gi|254950390|gb|ACT95090.1| DNA replication and repair protein RecF [Dyadobacter fermentans DSM 18053] Length = 365 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 79/347 (22%), Positives = 150/347 (43%), Gaps = 24/347 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L ++ F++Y VF VG+NG GKTN+L+AI FL+ ++++ + +G Sbjct: 6 LRLTYFKSYEEKAFVFGEHVNCIVGENGSGKTNLLDAIYFLT----LTKSAFHNQDALGI 61 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL---RISWLV 126 + F ++G+ I++ R R + + D + D L+ H+ + + Sbjct: 62 -RHINDFFLLDGVFNEHGKHIQITCSLQRGQRKVFMADK--KHYDRLSDHIGLFPVVLIA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSW 182 P + S ERRRF D ++ P + + + +++ RN LL + D Sbjct: 119 PDDTDLIREGSEERRRFFDGVLGQAVPGYLTDFLQYNKILTQRNGLLKFFAERNHLDEDL 178 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + L +I+ R + L ++ + + H K+ + Sbjct: 179 LETYNEPLIVLSQRIHQHRAAFMEKFVPLFYKFYEFLSSGHEKVDVI--------YESEV 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + ++ + R D ++RT G H+ + + + D GS G+QK L+ + LA Sbjct: 231 VSPDFPAEFRRNRSRDLHAQRTGKGIHKDEYVFE-IDGVTLKKFGSQGQQKSFLIALKLA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMT 348 L+ G PILLLD+I LD+ + + L ++ T +Q+F+T Sbjct: 290 QFELLKEEKGKTPILLLDDIFDKLDDRRIHKLIELIDTGFLAQVFIT 336 >gi|165975460|ref|YP_001651053.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226737765|sp|B0BRG1|RECF_ACTPJ RecName: Full=DNA replication and repair protein recF gi|165875561|gb|ABY68609.1| DNA replication and repair protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 360 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 155/355 (43%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + + Sbjct: 6 LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F AR++ EG S+ ++ + L+IN + +L L + + P Sbjct: 66 EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + +G RR FLD +F + +RL++ RN L + Y + W Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A+L ++ R AL I + Q P +++ ++ F Q + + Sbjct: 178 DIELAKLAEIVSQMRASYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305 YA+ L G + D T+IGP ++D + + + S G+ K+++ + LA Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGE 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T K D LN+ Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339 >gi|325926217|ref|ZP_08187575.1| DNA replication and repair protein RecF [Xanthomonas perforans 91-118] gi|325543399|gb|EGD14824.1| DNA replication and repair protein RecF [Xanthomonas perforans 91-118] Length = 344 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 75/323 (23%), Positives = 137/323 (42%), Gaps = 10/323 (3%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89 + GDNG GKT++LEA+ ++ GR FR + + G+ EG + + Sbjct: 2 NLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGANDLEVFVEWKEGNGAAGERT 61 Query: 90 IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149 + R +++ + + L L + P + SG RRRFLD +F Sbjct: 62 RRAGLRHSGQEWTGRLDGEDVAQLGALCAALAVVTFEPGSHVLISGGGEPRRRFLDWGLF 121 Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209 ++P + R ++ RN LL +G + + ++AE G + R + L Sbjct: 122 HVEPDFLTMWRRYARALKQRNALLKQGA-QPRMLDAWDHELAESGESLTSRRTRYLERLQ 180 Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 ++ V P + LS F G + + +L A L R+ D + T GPH Sbjct: 181 ERLVP-VADAIAPSLGLSALTFAPG-WKRHEVSL----ADALLLARERDRQNGYTSQGPH 234 Query: 270 RSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 R+D + + +A+ S G+ K+ + LA A + G P++ LD++ + LD Sbjct: 235 RADWVPSF--QALPGRDALSRGQAKLSALACLLAQAEDFAYERGEWPVIALDDLGSELDR 292 Query: 329 DKRNALFRIVTDIGSQIFMTGTD 351 + + + + +Q+ +T T+ Sbjct: 293 HHQGRVLQRLASAPAQVLITATE 315 >gi|289662281|ref|ZP_06483862.1| recombination protein F [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 368 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 82/344 (23%), Positives = 144/344 (41%), Gaps = 12/344 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I R + ++ L + + G+NG GKT++LEA+ ++ GR FR + + G+ Sbjct: 6 LSIHRLRRFQTVELHPASALNLLTGNNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65 Query: 70 PSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F + G+ G L L DV + L L + P Sbjct: 66 NDLEVFVEWKEGSGVAGERTRRAGLRHSGQEWTGRLDGEDVA--QLGSLCAALAVVTFEP 123 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 + SG RRRFLD +F ++P + R ++ RN LL +G + + Sbjct: 124 GSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQGA-QPRMLEAWD 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 ++AE G + R+ + L ++ V P + LS F G + + +L Sbjct: 183 HELAESGETLTSRRMRYLERLQDRLIP-VAGAIAPSLGLSALAFAPG-WKRHEVSL---- 236 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 A L R+ D + T GPHR+D + + D S G+ K+ + LA A Sbjct: 237 ADALLLARERDRQNGYTSQGPHRADWMPRF-DVLPGKDALSRGQAKLTALACLLAQAEDF 295 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + G P++ LD++ + LD + + + + +Q+ +T T+ Sbjct: 296 AFERGEWPVIALDDLGSELDRHHQARVLQRLVSAPAQVLITATE 339 >gi|289667647|ref|ZP_06488722.1| recombination protein F [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 368 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 82/344 (23%), Positives = 144/344 (41%), Gaps = 12/344 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I R + ++ L + + G+NG GKT++LEA+ ++ GR FR + + G+ Sbjct: 6 LSIHRLRRFQTVELHPASALNLLTGNNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65 Query: 70 PSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F + G+ G L L DV + L L + P Sbjct: 66 NDLEVFVEWKEGSGVAGERTRRAGLRHSGQEWTGRLDGEDVA--QLGSLCAALAVVTFEP 123 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 + SG RRRFLD +F ++P + R ++ RN LL +G + + Sbjct: 124 GSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQGA-QPRMLDAWD 182 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 ++AE G + R+ + L ++ V P + LS F G + + +L Sbjct: 183 HELAESGETLTSRRMRYLERLQDRLIP-VAGAIAPSLGLSALAFAPG-WKRHEVSL---- 236 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 A L R+ D + T GPHR+D + + D S G+ K+ + LA A Sbjct: 237 ADALLLARERDRQNGYTSQGPHRADWMPRF-DVLPGKDALSRGQAKLTALACLLAQAEDF 295 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + G P++ LD++ + LD + + + + +Q+ +T T+ Sbjct: 296 AFERGEWPVIALDDLGSELDRHHQARVLQRLVSAPAQVLITATE 339 >gi|187735102|ref|YP_001877214.1| DNA replication and repair protein RecF [Akkermansia muciniphila ATCC BAA-835] gi|187425154|gb|ACD04433.1| DNA replication and repair protein RecF [Akkermansia muciniphila ATCC BAA-835] Length = 351 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 152/361 (42%), Gaps = 49/361 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + +FR Y S Q I +G+N GKT++LEA+ FL + R A + Sbjct: 2 ISRLKLMDFRCYGSFSWQIPQQGAIILGNNARGKTSLLEAVCFLLRLQSPRTARTGPLVS 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRVVDELNKHLRISWL 125 G SF G+ G I+ R L D +RV E K R S+L Sbjct: 62 HGKQSF--------GIRGELPGQIR---------RILWAPDAPDLRVNGEPRKDQR-SYL 103 Query: 126 VPSMDRIFSG---LSM------ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 S ++ G LS+ RR+++D + P +R + + R ++ RN LL Sbjct: 104 ADSYPVVWMGNDDLSLVQAGADARRKYMDFLGSQWHPGYRLALFSYRRALKTRNYLLKHR 163 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + D + Q+A G ++ R ++ L+ PHI L+ + G+ Sbjct: 164 HRDKLQLDAYTRQLALHGTELRNLRANLLALLA------------PHIALAYRN-IGGRQ 210 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSR-----RTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 +Q A + L++ R SM R +T GPHR DL + + S G+ Sbjct: 211 EQVSIAYRASEEGDLYE-RLCASMDRDIRYGQTQNGPHRDDLDITLNGRN-AAQFASEGQ 268 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGT 350 Q+ + + LA + L++ TG PI L+D++ LD +R A + + D S I T Sbjct: 269 QRTTAISMKLAQSSLLTEETGHTPIHLIDDVFGELDPTRRIAFLQSLPADAQSLITTTHL 328 Query: 351 D 351 D Sbjct: 329 D 329 >gi|307249202|ref|ZP_07531199.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858726|gb|EFM90785.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 360 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 155/355 (43%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + + Sbjct: 6 LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F AR++ EG S+ ++ + L+IN + +L L + + P Sbjct: 66 EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEGGNKISDLAHLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + +G RR FLD +F + +RL++ RN L + Y + W Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A+L ++ R AL I + Q P +++ ++ F Q + + Sbjct: 178 DTELAKLAEIVSQMRANYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGAD 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305 YA+ L G + D T+IGP ++D + + + S G+ K+++ + LA Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCVLRLAQGE 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T K D LN+ Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339 >gi|227529859|ref|ZP_03959908.1| recombination protein F [Lactobacillus vaginalis ATCC 49540] gi|227350228|gb|EEJ40519.1| recombination protein F [Lactobacillus vaginalis ATCC 49540] Length = 374 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/361 (23%), Positives = 151/361 (41%), Gaps = 21/361 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRNY L + F + +G N GKTN+LEAI LS R R + ++ Sbjct: 6 LHLHNFRNYEDLTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTHNNRELINWQH 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S + V+ G + ++ ++ R+ ++N + + L P Sbjct: 66 KS-ATISGIVQKTSGRVPLELEFTSKGKRA----KVNHLEQARLSTYVGQLNAILFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185 + G RR F+D + ++ + L+R RN+ L + + D Sbjct: 121 LSLVKGAPALRRHFMDMEFSQMSSKYLYNAGQYRTLLRQRNKYLKQLKYGQQHDKVLLGV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + Q+A G ++ IAR + + L + +K + +L L K ++ +++ Sbjct: 181 LSDQLAAYGAEVIIARYQFLQHLEKWASQLHEKISLNAEQLRLDYITQLKLNEE-TTVEQ 239 Query: 246 EYAK--KLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 Y L+ + + T+ GP R D+ K + + GS G+Q+ + + LA Sbjct: 240 AYQDLLGLYQSHVNWEIEKGTTMYGPQRDDIHFMVNGKNVQ-SFGSQGQQRTTALSVKLA 298 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 L+ TG P+LLLD++ + LD ++ L D Q F+T T SLN+ A Sbjct: 299 EIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAFQD-KVQTFLTTT------SLNDVA 351 Query: 363 K 363 + Sbjct: 352 R 352 >gi|261880338|ref|ZP_06006765.1| recombination protein F [Prevotella bergensis DSM 17361] gi|270333029|gb|EFA43815.1| recombination protein F [Prevotella bergensis DSM 17361] Length = 375 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 97/369 (26%), Positives = 167/369 (45%), Gaps = 43/369 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64 +K ++I ++N ++ +L F + F+G+NG GKTN+L+AI +LS F + + ++ Sbjct: 3 LKNISIINYKNISAAQLAFSPKINCFIGNNGEGKTNLLDAIYYLS----FCHSCFTNIDG 58 Query: 65 -TRIGSPSFFSTFARVEGMEG-LADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLR 121 + FF G + +I++ L+ R R R + L++H+ Sbjct: 59 QVLMHDKEFFVIDGEYVTDSGEIENINVGLKRGRGKRFSRNK-------KNYKRLSEHIG 111 Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGY 177 + L+ PS + +G ERR+ +D ++ D R+ + + + + RN LL E Sbjct: 112 LIPLIFASPSDMTLVNGGGEERRKLMDIVIAQYDNRYIDALNAYNKAWQQRNALLKMEEE 171 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 D++ E +MAE G + R + L+ + E Q + K+SL G+ Sbjct: 172 PDNTLLDLWETEMAEQGEIVYRKRDSFVKELTPVFQEIYQYISGQQEKVSLRYVSHGQRG 231 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGSTGEQKV 294 ++ + R D +L G HR +L I DY K GS G+ K Sbjct: 232 NLLEVIQRD--------RFKDRAVGYSLHGIHRDELEMLIGDYPMKR----EGSQGQIKT 279 Query: 295 VLVGIFLAH----ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTG 349 ++ + LA R SNTT P+LLLD+I LD + + R+V+ D QIF+T Sbjct: 280 YVLALKLAQFDFLRRTASNTT---PLLLLDDIFDKLDSQRVEQIVRLVSGDNFGQIFITD 336 Query: 350 TDKSVFDSL 358 T++ D + Sbjct: 337 TNRGHLDKI 345 >gi|188989399|ref|YP_001901409.1| recombination protein F [Xanthomonas campestris pv. campestris str. B100] gi|167731159|emb|CAP49331.1| DNA replication and repair protein [Xanthomonas campestris pv. campestris] Length = 397 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 82/352 (23%), Positives = 145/352 (41%), Gaps = 18/352 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ + + GDNG GKT++LEA+ ++ GR FR + Sbjct: 24 MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFRGRVRDGL 83 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLR 121 R G F VE E D + + R +++ + + L L Sbjct: 84 IRQGGQD-LEIF--VEWRERAGDSTERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALA 140 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 141 VVTFEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQGA-QPQ 199 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + + ++AE G + R++ + L ++ V P + LS F G Sbjct: 200 MLDAWDHELAESGETLTSRRLQYLERLQERLVP-VATAIAPSLGLSALTFAPGWRRHEVS 258 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGI 299 A L R+ D + T GPHR+D + D + S G+ K+ + Sbjct: 259 -----LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDAL---SRGQAKLTALAC 310 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LA A ++ G PI+ LD++ + LD + + + + +Q+ +T T+ Sbjct: 311 LLAQAEDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATE 362 >gi|54292967|ref|YP_125382.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str. Lens] gi|53752799|emb|CAH14233.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str. Lens] Length = 353 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 83/349 (23%), Positives = 149/349 (42%), Gaps = 41/349 (11%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I FRN AS L+ + G NG GKT++LEA+ LS FR + G Sbjct: 8 IHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVTPIISYGQNQ 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + FA + IS++ D ++ +N+ +L L + + + Sbjct: 68 -LNVFAHAYDE---STISVQKSITDGTQIK---LNNQFCCTTSQLAYALPCQVIYSDIFQ 120 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIE 187 I RR LD +F + + + D++R++ RN LL T +F W + Sbjct: 121 IIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHF-IPW----D 175 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FLDGKFDQSFC 241 Q+++L +++ AR + +++ K F + LT + G ++ Sbjct: 176 QQLSQLANQLDKAR-------NDYFLQWQPK--FYQVLSDLTDISCTVEYYKGWDRKNAG 226 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIF 300 EE +K FD D T GPH++DLI+ + + H S G+QK++L+ + Sbjct: 227 QNMEELLQKSFDS---DRNKLYTQYGPHQADLIIS--TEQYRVKHTLSRGQQKIILIALK 281 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 LA +L+ + L+D+++A LD+ + L + + + Q +T Sbjct: 282 LAQGQLLDKDC----LYLIDDLAAELDDYHQRNLIKYLAQLKGQFVITN 326 >gi|147676338|ref|YP_001210553.1| recombination protein F [Pelotomaculum thermopropionicum SI] gi|189039631|sp|A5D6E6|RECF_PELTS RecName: Full=DNA replication and repair protein recF gi|146272435|dbj|BAF58184.1| recombinational DNA repair ATPase [Pelotomaculum thermopropionicum SI] Length = 364 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 163/382 (42%), Gaps = 37/382 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + FRN+A + + G N GKTNILE+I GR FR A ++ Sbjct: 3 LRRLEMLNFRNFARQAVEPGLYFNVLSGRNAQGKTNILESIYLACTGRSFRTAREKEL-- 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR----I 122 I FS+ I ETR R V +++ V R E+N L+ Sbjct: 61 IKREKEFSS------------IRCLFETR-GREVE-VKVTLVPGRKRIEVNGVLKSGHPF 106 Query: 123 SW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 W P + G ERRRFLD + P + + + R++ RN LL E Sbjct: 107 GWPGVVLFTPDDLVMIKGSPAERRRFLDYDLGPFHPHYAHCLDRYNRVLSQRNALLREAK 166 Query: 178 FDSSWCSSIEA---QMAELGVKINIARVEMIN----ALSSLIMEYVQKENFPHIKLSLTG 230 + +E Q+ G ++ RV ++ A+ +L E E +I++S Sbjct: 167 EKRTTGGPLEVWDEQLCRYGSRLLFLRVSLLKKFFPAIRALHRELT--EGAENIEISYLS 224 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 L + + E ++ +L R + +TL+GPHR DL + D + S G Sbjct: 225 SLKIGEECGEDEIYERFSGELRLVRDEEIARMQTLVGPHRDDLHIK-VDGHDARVYCSQG 283 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ +++ + + + TG PILLLD++ LD+++R AL + + Q F+T T Sbjct: 284 QQRTIVLTLKVFLIEQWRSETGEYPILLLDDVLFELDDNRREALMCRLGGL-VQTFLTCT 342 Query: 351 DKSVFDSLNETAKFMRISNHQA 372 + FD AK +S + Sbjct: 343 -RVNFDIEGFKAKVFTVSGGEV 363 >gi|323496929|ref|ZP_08101957.1| recombination protein F [Vibrio sinaloensis DSM 21326] gi|323318003|gb|EGA70986.1| recombination protein F [Vibrio sinaloensis DSM 21326] Length = 360 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 85/365 (23%), Positives = 153/365 (41%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNDC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + L + L + + P Sbjct: 66 NELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAHLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW--CSS 185 + + RR F+D VF + F+RL + RN LL SS+ S Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTA---SSYRELSY 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R + + S E Q P + L + D + + E Sbjct: 178 WDQEMARLAENISQWRSIYVEQMKSKAEEICQT-FLPEFDIQLKYYRGWDKDTPYQQILE 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 + ++ D T GP+++DL + + S G+ K+++ + +A + Sbjct: 237 KNFER-------DQSLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T V D +E K Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRERLAECLKETGAQVFVSSITQSQVADMADENGKM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|294101018|ref|YP_003552876.1| DNA replication and repair protein RecF [Aminobacterium colombiense DSM 12261] gi|293615998|gb|ADE56152.1| DNA replication and repair protein RecF [Aminobacterium colombiense DSM 12261] Length = 339 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 94/348 (27%), Positives = 148/348 (42%), Gaps = 46/348 (13%) Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEG 81 RL + A + VG+NG GKTN LEAI LS G G R+S SF + E Sbjct: 5 RLEWAAGLNLLVGNNGSGKTNALEAIHILS-GWGPFRSSRK--------SFLVNWDTEEK 55 Query: 82 MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN---------KHLRISWLVPSMD-- 130 L R + N ++ V E N H + L+P++ Sbjct: 56 QAYL------------RGYFSGETNLDIVATVGEKNIIQCDGKRITHGNVRSLIPALAFL 103 Query: 131 ----RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 I G RR+FLDR+ + P + R+M D R +R R LL E D S S + Sbjct: 104 PGDLAIVDGAPSVRRQFLDRLCALLFPLYVRKMSDCRRALRHRVILLRE-RKDPSLTSKV 162 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 +A L I R ++ L I E+ + P + LT G D ++ Sbjct: 163 ---LAPLVSWIWSTRAAAVDLLKIGIQEF--RILLPS-DIVLTFERGGALD--LQDPMQD 214 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Y + + R+ + ++ +GP R D+I+ ++++I S G+++ V + LA Sbjct: 215 YWESVRKWREKEHITGVPQVGPQRDDMIITTKGQSVSIVM-SRGQRRRTAVALMLAAGWA 273 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + P+L+LDEI+A LD+ RN L + + Q+F + S+ Sbjct: 274 VERKLRRKPLLILDEIAAELDDRGRNILIDALVESSWQVFAATAESSM 321 >gi|293376414|ref|ZP_06622648.1| DNA replication and repair protein RecF [Turicibacter sanguinis PC909] gi|325839307|ref|ZP_08166773.1| DNA replication and repair protein RecF [Turicibacter sp. HGF1] gi|292644970|gb|EFF63046.1| DNA replication and repair protein RecF [Turicibacter sanguinis PC909] gi|325490589|gb|EGC92904.1| DNA replication and repair protein RecF [Turicibacter sp. HGF1] Length = 377 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 97/381 (25%), Positives = 171/381 (44%), Gaps = 42/381 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L + +FRNY + + F I +G+N GKT+++E++ LS + R + + + Sbjct: 3 IKKLVVKQFRNYENACVEFKKNINIIIGNNAQGKTSLIESMYVLSTTKSHRTSKDSQLIL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIRVVDELNK 118 G+ FAR+E ADI +DD S+ + N +V + + + Sbjct: 63 FGTD-----FARIE-----ADIK---REQDDFSLSLVLSKKGKKASYNGIVQKKLSDYVG 109 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 L + P + G RRRF+D + + P + + + +L++ RN LL + Sbjct: 110 KLIVVMFAPEDLSLVKGGPQYRRRFMDMEIGQLSPSYLFHLGQYSKLLKQRNELLKQLRI 169 Query: 179 DSS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLS-LT 229 + I Q+ V + R+E + L S + QKE I+L + Sbjct: 170 NRQNELLLDVITEQLVPHAVYVLNKRIEFLKQLESFCKDVHGEISKQKE---EIQLDYIN 226 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 F + + D+ ++ ++Y ++L+D D T +GPHR D V + T GS Sbjct: 227 SFKNIELDEE--SILQKY-RELYD---QDIQLGSTNLGPHRDDFSVS-INGINTHQFGSQ 279 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ + + LA LI + PILLLD++ + LD+ ++ L + + Q F+T Sbjct: 280 GQQRTASLSMKLAEIELIYSVLHEYPILLLDDVLSELDDTRQTQLLNTIKN-KVQTFITT 338 Query: 350 TD-KSVFDSLNETAKFMRISN 369 T+ + D + E A I+N Sbjct: 339 TNIDGIDDEVIELADIFTINN 359 >gi|270158400|ref|ZP_06187057.1| DNA replication and repair protein RecF [Legionella longbeachae D-4968] gi|289163356|ref|YP_003453494.1| RecF recombinational DNA repair ATPase [Legionella longbeachae NSW150] gi|269990425|gb|EEZ96679.1| DNA replication and repair protein RecF [Legionella longbeachae D-4968] gi|288856529|emb|CBJ10324.1| RecF recombinational DNA repair ATPase [Legionella longbeachae NSW150] Length = 356 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 87/360 (24%), Positives = 149/360 (41%), Gaps = 46/360 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I + RN S L + + G NG GKT++LEA LS G FR A + Sbjct: 6 LKIHQLRNIISAHLELNPRFNFIFGSNGSGKTSVLEAFYLLSCGHSFRTREIAPIISHNQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 PS + FAR E ISI+ V+ +N+ +L L + Sbjct: 66 PS-MTVFARGRNQE---TISIQKSYSGATQVK---LNNQFCSTTSQLAYALPCQVFYSDL 118 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 +I RR LD +F + + +++R+++ RN LL + + + + Q Sbjct: 119 FQIIDAGPSVRRNLLDWGLFHVKHNYFNLWKEYKRVLKQRNALLKKRAPFTHYI-PWDKQ 177 Query: 190 MAELGVKINIARV--------EMINALSSL-----IMEYVQKENFPHIKLSLTGFLDGKF 236 + +L ++++ R E I+ LS L ++Y + + ++ SL L F Sbjct: 178 LDQLANQLHLLREEYFIQWEREFISVLSELSELGCTLKYYKGWDKKNLGKSLEEVLAENF 237 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 D D T G H++D I++ D S G+QK++L Sbjct: 238 DS-------------------DCHKLYTQHGAHQADFIIE-VDNNKVKHFISRGQQKIIL 277 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDE-DKRNALFRIVTDIGSQIFMTGTDKSVF 355 + + LA A L+S + L+D+++A LDE +R + + T G I + ++ +V Sbjct: 278 IALKLAQANLVSEDC----LYLMDDLAAELDEAHQRRIMSHLFTRNGQYIITSTSNSNVL 333 >gi|291297364|ref|YP_003508762.1| DNA replication and repair protein RecF [Meiothermus ruber DSM 1279] gi|290472323|gb|ADD29742.1| DNA replication and repair protein RecF [Meiothermus ruber DSM 1279] Length = 357 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 150/350 (42%), Gaps = 33/350 (9%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN + T VG N GKTN+LEAI L+ G G R A+ G + Sbjct: 11 FRNLFTPVFAPGPGLTTVVGGNAQGKTNLLEAIE-LALG-GELRNGLAERIAFGQGEAW- 67 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A +E G + + +KL +R+ R R +N+ + EL + L P + Sbjct: 68 LHAEIETQFGNSRLEVKL-SREGREHR---LNEAPA-SLRELAQLPGAVLLGPDDLELVL 122 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS------WCSSIEA 188 G ERRRFLD ++ R+R + + R ++ RN +L G+ +S SS A Sbjct: 123 GPPEERRRFLDVLLSRFSARYRSMLSQYNRALQQRNAVLKSGFRPTSRGQGEGAPSSTRA 182 Query: 189 -------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 ++ + G +I R M+ L+ L E ++ + L L+ D Sbjct: 183 SIGIWNHELVKYGSEILSLRRRMLAKLTPLAREAYRELAPGELNLELSETTD-------- 234 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + + + L D + D T +GPHR DL++ + GS GE + + + + L Sbjct: 235 --PDRFLQTLEDNLQDDLQRGATSVGPHRDDLVI-LLEGREAARFGSRGECRSIALALRL 291 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 A RL+ AP+LL+DE + LD +R AL + Q + G + Sbjct: 292 AEHRLLWQHYEEAPLLLVDEWHSELDNRRRGALLAYAQSL-PQAILAGLE 340 >gi|67925054|ref|ZP_00518434.1| RecF protein [Crocosphaera watsonii WH 8501] gi|67853101|gb|EAM48480.1| RecF protein [Crocosphaera watsonii WH 8501] Length = 380 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 92/373 (24%), Positives = 175/373 (46%), Gaps = 36/373 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ FRNY L F++Q TI +G+N GK+N+LEA+ L+ + R D+ Sbjct: 3 LKNIHLYAFRNYHEQTLNFESQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDLIL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G VE G + + I + RS L +N + L +HL + Sbjct: 63 EGEKK-GQILGTVERNYGESQMGITFRSPGRRS---LMLNH------ENLRRHLEFLGHI 112 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----- 173 +++ FS L +E RR +LD ++ ++P + + + +++R RN LL Sbjct: 113 NAVE--FSCLDLELVRGSPETRRSWLDTLLIQLEPVYASIINQYNKVLRQRNALLKVIRK 170 Query: 174 -TEGYFDSSWCSS-------IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 E ++ S+ + Q+AE G ++ R +I +S L + ++ + K Sbjct: 171 TVEEQTNTDNLSAEMSQLKLWDQQLAEAGTRVTRRRNRVIERISPLAENWHKEISNGTEK 230 Query: 226 LSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 L + + D + +++ + K+ R + +++GPHR D+ + + Sbjct: 231 LEINYLPNISIDREEPQEVQQAFLDKIEQRRMAEQQLATSVVGPHRDDVELK-INHTPAK 289 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 ++GS G+Q+ +++ I LA +LI + G P+LLLD++ A LD +++N L ++ Q Sbjct: 290 SYGSQGQQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDPNRQNQLLEVIQG-RFQ 348 Query: 345 IFMTGTDKSVFDS 357 +T T FD+ Sbjct: 349 TIITTTYLHSFDT 361 >gi|160890975|ref|ZP_02071978.1| hypothetical protein BACUNI_03420 [Bacteroides uniformis ATCC 8492] gi|270294288|ref|ZP_06200490.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156859196|gb|EDO52627.1| hypothetical protein BACUNI_03420 [Bacteroides uniformis ATCC 8492] gi|270275755|gb|EFA21615.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 370 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 89/356 (25%), Positives = 154/356 (43%), Gaps = 18/356 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + D Sbjct: 3 LKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKS--AGNPIDSQN 60 Query: 67 IGSPS-FFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 I + FF E +G + I ++ R + + + R+ D + L + Sbjct: 61 ICHDADFFVIQGFYEAADGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVM 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 118 VSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEELF 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E MA+ G + R I + + + K+ L+ + L Sbjct: 178 LVWEEMMAQAGEVVFRKREAFIREFIPIFQSFYSFISQDREKVGLSYDSHARDASLLEVL 237 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE A+ D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 238 KESRAR--------DQIMGYSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 289 FDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDSFGQIFITDTNREHLDRI 344 >gi|257464818|ref|ZP_05629189.1| recombination protein F [Actinobacillus minor 202] gi|257450478|gb|EEV24521.1| recombination protein F [Actinobacillus minor 202] Length = 361 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 83/365 (22%), Positives = 161/365 (44%), Gaps = 27/365 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN ++ L Q +G NG GKT++LE+I +L GR F ++ ++ Sbjct: 6 LIVQNFRNLQAVDLTLSPQFNFIIGANGSGKTSLLESIFYLGHGRSF-KSHISNRIIHHD 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F ++E + + I+ + + + L+IN + +L + L + + P Sbjct: 65 ADHFVLHGKIEEAQHSWSVGIQKQRSGETT---LKINGEDGNKIADLAQLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + + RR FLD +F ++ +RL++ RN L + YF+ +W Sbjct: 122 LTLLNDGPSYRRAFLDWGLFHQHAEFYSDWVNLKRLLKQRNAALHQVRSYFELKAW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A+L K++ R + A+ I + + P + + ++ F G + Sbjct: 178 DIELAKLAEKVSQMRAAYVEAILPEI-DKTCRFFLPELDIQIS-FYQG------WEKGAD 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L G + D T++GP ++DL + + S G+ K+++ + LA Sbjct: 230 YADILAQGFERDQNLGYTMMGPQKADLRIKANGLPVEDVL-SRGQLKLLMCALRLAQGEF 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + + L+D+ ++ LD KR L + + + SQ+F+T K + LN+ M+ Sbjct: 289 LMTQKARQCLFLVDDFASELDPTKRELLSQRLRESHSQVFVTAITK---EQLNQ----MQ 341 Query: 367 ISNHQ 371 HQ Sbjct: 342 WQEHQ 346 >gi|329962146|ref|ZP_08300157.1| DNA replication and repair protein RecF [Bacteroides fluxus YIT 12057] gi|328530794|gb|EGF57652.1| DNA replication and repair protein RecF [Bacteroides fluxus YIT 12057] Length = 369 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 20/357 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + R Sbjct: 3 LKRISILNYKNLEQVELTFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E +G + I ++ R + + + R+ D + L + + Sbjct: 63 -HEADFFVIQGFYEASDGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVMV 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184 P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 119 SPADSELIAGGSEERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEELFL 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + ++ + LS D S Sbjct: 179 VWEEMMAQAGEVVFRKREAFIQEFIPIFQSFYSFISQDKEQVGLSYDSHAR---DTSLLE 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + +E R D + +L G H+ +L + D I GS G+ K L+ + LA Sbjct: 236 VLKE-------SRVRDRIMGYSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLIALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358 + T P+LLLD+I LD + + ++V G QIF+T T++ D + Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIIKLVASDGFGQIFITDTNREHLDRI 344 >gi|303250482|ref|ZP_07336679.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251524|ref|ZP_07533431.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256024|ref|ZP_07537812.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302650470|gb|EFL80629.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860988|gb|EFM92994.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865446|gb|EFM97341.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 360 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 154/355 (43%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + S Sbjct: 6 LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIINYQS 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F R++ EG S+ ++ + L+IN + +L L + + P Sbjct: 66 EDFV-LHGRID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + +G RR FLD +F + +RL++ RN L + Y + W Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSYWANLKRLLKQRNAALHQVRSYAELKPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A+L ++ R AL I + Q P +++ ++ F Q + + Sbjct: 178 DTELAKLAEIVSQMRANYAEALRPEIEKTCQF-FLPELEIGVS------FHQGWEK-GAD 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305 YA+ L G + D T+IGP ++D + + + S G+ K+++ + LA Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCVLRLAQGE 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T K D LN+ Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339 >gi|240950077|ref|ZP_04754379.1| recombination protein F [Actinobacillus minor NM305] gi|240295452|gb|EER46207.1| recombination protein F [Actinobacillus minor NM305] Length = 361 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 160/370 (43%), Gaps = 35/370 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FRN ++ L Q +G NG GKT++LE+I +L GR F ++ ++ Sbjct: 6 LIVQNFRNLQAVDLTLSPQFNFIIGANGSGKTSLLESIFYLGHGRSF-KSHISNRIIHHD 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F ++E + + I+ + + + L+IN + +L + L + + P Sbjct: 65 ADHFVLHGKIEETQHSWSVGIQKQRSGETT---LKINGEDGNKIADLAQLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + + RR FLD +F ++ +RL++ RN L + YF+ +W Sbjct: 122 LTLLNDGPSYRRAFLDWGLFHQHTEFYNDWVNLKRLLKQRNAALHQVRSYFELKAW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL-DGKFDQSFCALKE 245 + ++ +L K++ R + A+ P I + FL + + SF E Sbjct: 178 DIELVKLAEKVSQMRAAYVEAI------------LPEIDKTCRFFLPELEIQMSFYQGWE 225 Query: 246 ---EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +YA L G + D T++GP ++DL + + S G+ K+++ + LA Sbjct: 226 RGADYADILAQGFERDQSLGYTMMGPQKADLRIKANGLPVEDVL-SRGQLKLLMCALRLA 284 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + + L+D+ ++ LD KR L + + + SQ+F+T K + LN+ Sbjct: 285 QGEFLMTQKARQCLFLVDDFASELDPTKRELLSQRLRESHSQVFVTAITK---EQLNQ-- 339 Query: 363 KFMRISNHQA 372 M+ HQ Sbjct: 340 --MQWQEHQT 347 >gi|261338544|ref|ZP_05966428.1| RecF protein [Bifidobacterium gallicum DSM 20093] gi|270276565|gb|EFA22419.1| RecF protein [Bifidobacterium gallicum DSM 20093] Length = 381 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 89/366 (24%), Positives = 155/366 (42%), Gaps = 38/366 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + FR++ + L F + T+ G NG+GKTN++EAI LS G R +S + Sbjct: 1 MRITRLALDHFRSWNEVVLDFPSGITMLQGHNGLGKTNLVEAIEVLSTGSSHRTSSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-----CLQINDVVIRVVDELNKH 119 + G + + A V+ + A + + R L + D+V +V Sbjct: 61 VQRGQQT-ATIRANVQHQDRTATYEATIRAKGANRARINSGSSLYLRDIVGQVPSVT--- 116 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL------ 173 P R+ SG RRRFLD+ + + + + D + + R R LL Sbjct: 117 -----FSPDDQRLVSGDPSARRRFLDQAGSQLVAGYAQLLQDVQHVGRQRAALLKSLGQH 171 Query: 174 ---TEGYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 + ++ +S+E Q GV + AR +++ L+ + P + Sbjct: 172 GEPVDTVSRNAALASLEVWTGQFISAGVALTRARQQLVQRLAEPFSLVYSQLAGPAEQAR 231 Query: 228 LT---GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 LT F + D A + ++L+ G ++ LIGP R DL V Sbjct: 232 LTYEPSFDEVLTDADPAAALSRHFQRLYAGETSRGVN---LIGPQRDDLSVQLNGMD--- 285 Query: 285 AH--GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 AH S GE + + + +A RL++ + P+++LD++ A LDE +R + + Sbjct: 286 AHEFASNGEMWAISLALKMALTRLLAEYHAYNPVVILDDVFAQLDESRRGQILSFAAE-Q 344 Query: 343 SQIFMT 348 Q+ MT Sbjct: 345 DQVIMT 350 >gi|325851995|ref|ZP_08171078.1| DNA replication and repair protein RecF [Prevotella denticola CRIS 18C-A] gi|325484551|gb|EGC87467.1| DNA replication and repair protein RecF [Prevotella denticola CRIS 18C-A] Length = 368 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 90/382 (23%), Positives = 159/382 (41%), Gaps = 53/382 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L + F+G NG GKTN+L+A+ +LS + ++V Sbjct: 1 MQLDRLSIINYKNIQTATLNLSGKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDE 115 R + F +EG +T + V C + N R + + Sbjct: 61 MRHDADFFV--------LEG----DYTTDTGEQEQVYCGMKRGAKKHFKRNKKEYRRLSQ 108 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174 L + ++ P+ + G S ERRR +D ++ D + + + + ++ RN LL Sbjct: 109 HIGRLPLIFVSPADATLIEGGSEERRRLMDVVISQYDTPYIESLGRYNKALQQRNSLLKQ 168 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 E D + +E QMAE G + R + L+ Q + ++SL Sbjct: 169 EEEPDPTLMELLEMQMAEHGEAVYRKRAAFVQELTPCFRRIYQTISNNREQVSL------ 222 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIA 285 EY G +D + R +L G H+ DL++ + Sbjct: 223 -----------EYVSHCQRGSLLDIIQRDRVKDRIMGFSLHGTHKDDLMMKLGGYPMK-R 270 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT--DIG 342 GS G+ K ++ + LA + T G P+LLLD+I LD + + R+V+ D G Sbjct: 271 EGSQGQNKTYVLALKLAQFDFLRRTAGGRTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFG 330 Query: 343 SQIFMTGTDKSVFDSLNETAKF 364 QIF+T T++ D + + + F Sbjct: 331 -QIFITDTNREHLDKILQGSGF 351 >gi|89092266|ref|ZP_01165220.1| DNA replication and repair protein RecF [Oceanospirillum sp. MED92] gi|89083354|gb|EAR62572.1| DNA replication and repair protein RecF [Oceanospirillum sp. MED92] Length = 363 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 156/362 (43%), Gaps = 28/362 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I RN +S+ + I G+NG GKT+ILEAI+ L R FR + Sbjct: 1 MSISNLQIKNLRNISSISFAPSSAINIICGENGSGKTSILEAINVLGLTRSFRTNKARHL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 + S FA ++ M S+ +E + R + D+ + + EL I Sbjct: 61 VQTEQASTV-VFASIDPMAQGFKQSLGVERPVEGEARIRFEGGDIDLSTLAEL-----IP 114 Query: 124 WLVPSMDR--IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 V + D + G RR+FLD VF D + F R+++ RN LL Sbjct: 115 LQVINSDTFMLLEGSPAVRRQFLDWGVFHADKAFIQLWRGFRRVLKQRNTLLK------- 167 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQS 239 C I+ Q+ ++ + IA + L+ L +EY++ K F + L G +D + S Sbjct: 168 -CGKIDNQLRQVWDREFIA---FSDQLTRLRIEYLKLLKPEFDKVVSQLLGDMDVQLGFS 223 Query: 240 F-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVL 296 + K + + L + D T GP R+D L VD + A + S G++K+V+ Sbjct: 224 YGWDKKRQLDEVLASNFERDLRQGFTGSGPQRADIKLKVDGHNAAERL---SRGQKKLVV 280 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + LA L G I L+D++ + LD +++ +Q F+T D S + Sbjct: 281 SALKLAQGALFQRMNGRPCIYLIDDLPSELDSAHGELFCKVLEQSSNQCFITCVDDSSLN 340 Query: 357 SL 358 + Sbjct: 341 AF 342 >gi|303233458|ref|ZP_07320126.1| DNA replication and repair protein RecF [Atopobium vaginae PB189-T1-4] gi|302480466|gb|EFL43558.1| DNA replication and repair protein RecF [Atopobium vaginae PB189-T1-4] Length = 428 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 94/390 (24%), Positives = 156/390 (40%), Gaps = 57/390 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + ++N AS L F TI G N GKTNI+EAI + G F+ A Sbjct: 31 LQQLQLYNWKNIASATLEFSPAATILYGPNAAGKTNIIEAIHQCTTGVSFKHTPAAACIS 90 Query: 67 IGSPSFFSTFARVEG---------MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 G+ +T ++ +E I+ R+ R L N R L+ Sbjct: 91 QGTSQCSATATLIDAARTITLACKVEAPTPIASTENVPTQRAKRTLFANGKPARPYT-LS 149 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 + P + + RR D I ++ + + RN LL +G Sbjct: 150 AYAPSIVFTPDDLQCIKQSAKARRDEFDMFAKTITREYQHIYTTYTHCIEQRNTLLKQGI 209 Query: 178 FD---SSWCSSIEAQMAELGVKINIARVEMINALSSLIM---------EYVQKENFP--- 222 ++W S A L AR+ ++ L + I E + + P Sbjct: 210 SPDVRAAWDESFMRGAAALMY----ARMRLLERLYTHITDVYRTIAPSETLTYQYMPSWL 265 Query: 223 ----HI-----KLSLTGFLDGKFDQS------FCALKEEYAKKLFDGRKMDSMSRRTLIG 267 H+ KL+ FL G+ F L+ + + +++ +TL+G Sbjct: 266 RLPAHVAPTISKLACAPFLPGQTPTKDELYTLFSTLQPQV-------QNLEAQRMQTLLG 318 Query: 268 PHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 P R D+ ++ D A T A S G+Q+ +++ I +A L GF PILLLD++ + Sbjct: 319 PQRDDVQFFINGMD-ARTCA--SQGQQRSIILAIKIAQVLLTHEIHGFYPILLLDDVMSE 375 Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 LDE +RN +F ++ + G Q +T T+ F Sbjct: 376 LDELRRNTIFSLIHN-GIQAIITTTNLGYF 404 >gi|307260453|ref|ZP_07542148.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869856|gb|EFN01638.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 367 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 89/355 (25%), Positives = 155/355 (43%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN SL L VG NG GKT++LEA+ +L GR F+ + + Sbjct: 13 LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAVFYLGHGRSFKSHISNRIIHYQA 72 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F AR++ EG S+ ++ + L+IN + +L L + + P Sbjct: 73 EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 128 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + +G RR FLD +F + +RL++ RN L + Y + W Sbjct: 129 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 184 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A+L ++ R AL I + Q P +++ ++ F Q + + Sbjct: 185 DIELAKLAEIVSQMRASYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 236 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305 YA+ L G + D T+IGP ++D + + + S G+ K+++ + LA Sbjct: 237 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGE 294 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T K D LN+ Sbjct: 295 YLVAQKERQCLFLIDDFASELDPIKRELLAYRLRESGSQVFVTAITK---DQLNQ 346 >gi|303251824|ref|ZP_07337995.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249126|ref|ZP_07531133.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649254|gb|EFL79439.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854414|gb|EFM86610.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 360 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 154/355 (43%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + S Sbjct: 6 LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIINYQS 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F R++ EG S+ ++ + L+IN + +L L + + P Sbjct: 66 EDFV-LHGRID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + +G RR FLD +F + +RL++ RN L + Y + W Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A+L ++ R AL I + Q P +++ ++ F Q + + Sbjct: 178 DTELAKLAEIVSQMRANYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGAD 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305 YA+ L G + D T+IGP ++D + + + S G+ K+++ + LA Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCVLRLAQGE 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T K D LN+ Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339 >gi|15603024|ref|NP_246096.1| recombination protein F [Pasteurella multocida subsp. multocida str. Pm70] gi|13959473|sp|Q9CLQ6|RECF_PASMU RecName: Full=DNA replication and repair protein recF gi|12721507|gb|AAK03243.1| RecF [Pasteurella multocida subsp. multocida str. Pm70] Length = 358 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 86/356 (24%), Positives = 155/356 (43%), Gaps = 16/356 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I FRN ++ L FD VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLIENFRNLTAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123 P F A+++ E S+ L+ R SV ++IN + +L L + Sbjct: 61 ISYEQPHFI-LHAKIQ--EQAHQWSVGLQKLRQGNSV--VKINGEDGNKIADLAHLLPMQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + +G + RR FLD +F ++ RL++ RN L + + Sbjct: 116 LITPEGLTLLNGGPVYRRAFLDWGLFHHHNHFHLAWVNLNRLLKQRNAALQQATHYQA-L 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ +L +++ R + AL I E + P +++S++ F Q + Sbjct: 175 EIWDRELVKLAHQVSEWRAQYAEALRPEI-EQTCRLFLPELEISVS------FHQGW-EK 226 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +YA L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 227 DSDYADLLVRHFERDRAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQ 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 + I L+D+ ++ LD+ KR L + GSQ+F++ ++ + Sbjct: 286 GEHLMKQKERHCIFLIDDFASELDQYKRALLAERLKQSGSQVFVSAITETQLKQMQ 341 >gi|326562314|gb|EGE12640.1| DNA replication and repair protein RecF [Moraxella catarrhalis 103P14B1] gi|326575518|gb|EGE25443.1| DNA replication and repair protein RecF [Moraxella catarrhalis 101P30B1] Length = 402 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 163/369 (44%), Gaps = 39/369 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I E RN + L A + I VG NG GKT++LEA+ LS G+ FR R Sbjct: 2 IKQLQIHELRNLKQVNLTLAACNLI-VGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + +AR + E K +S L+ N+ + L+ HL + Sbjct: 61 -HHQSACTVWARTKFEESCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTLLID 119 Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS- 184 P SM + G S+ RR+ LD + F I P+ + + ++RL++ RN LL Sbjct: 120 PVSMSLLDEG-SISRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLPEL 178 Query: 185 -SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFC 241 + + Q+ ++ R+ + + + E + K+ P H LSL +L G FD Sbjct: 179 FAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQ-YLAG-FD---- 231 Query: 242 ALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDL---IVDYCDKAITIAHGST----- 289 Y K L KM D T IG HR+D+ I ++ TI +T Sbjct: 232 -----YTKPLSQTLKMRFNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSR 286 Query: 290 GEQKVVLVGIFLAHARLISNT-------TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 GE+K+++ + L+ +L+ + T P++L+D++ A LDED L + V + Sbjct: 287 GEKKLLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLP 346 Query: 343 SQIFMTGTD 351 Q +T + Sbjct: 347 CQAIITSLN 355 >gi|76798667|ref|ZP_00780891.1| DNA replication and repair protein recF [Streptococcus agalactiae 18RS21] gi|76585977|gb|EAO62511.1| DNA replication and repair protein recF [Streptococcus agalactiae 18RS21] Length = 242 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 9/233 (3%) Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKIN 198 RR+FLD + I P + + ++ +++ RN L T D ++ + ++ Q+A+ G ++ Sbjct: 4 RRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTVLDEQLADYGSRVI 63 Query: 199 IARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 R + I AL+ Y+ H+ + ++ D+S +++E + +L Sbjct: 64 EHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFT-DKS--SIREHFLNQLSKSHS 120 Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316 D + T IGPHR D+ D T A S G+Q+ +++ + LA LI T PI Sbjct: 121 RDIFKKNTSIGPHRDDITFFINDINATFA--SQGQQRSLILSLKLAEIELIKTVTNDYPI 178 Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 LLLD++ + LD ++ L + + Q F+T T +L + K +S+ Sbjct: 179 LLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLKIFNVSD 230 >gi|53729132|ref|ZP_00134098.2| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207491|ref|YP_001052716.1| recombination protein F [Actinobacillus pleuropneumoniae L20] gi|166220695|sp|A3MY75|RECF_ACTP2 RecName: Full=DNA replication and repair protein recF gi|126096283|gb|ABN73111.1| DNA replication and repair protein RecF [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 360 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 155/355 (43%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + + Sbjct: 6 LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F AR++ EG S+ ++ + L+IN + +L L + + P Sbjct: 66 EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + +G RR FLD +F + +RL++ RN L + Y + W Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A+L ++ R AL I + Q P +++ ++ F Q + + Sbjct: 178 DTELAKLAEIVSQMRANYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305 YA+ L G + D T+IGP ++D + + + S G+ K+++ + LA Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCVLRLAQGE 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T K D LN+ Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339 >gi|326561745|gb|EGE12080.1| DNA replication and repair protein RecF [Moraxella catarrhalis 7169] gi|326563090|gb|EGE13363.1| DNA replication and repair protein RecF [Moraxella catarrhalis 12P80B1] gi|326569034|gb|EGE19103.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC1] gi|326571723|gb|EGE21736.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC8] gi|326574363|gb|EGE24306.1| DNA replication and repair protein RecF [Moraxella catarrhalis CO72] gi|326578063|gb|EGE27923.1| DNA replication and repair protein RecF [Moraxella catarrhalis O35E] Length = 402 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 163/369 (44%), Gaps = 39/369 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I E RN + L A + I VG NG GKT++LEA+ LS G+ FR R Sbjct: 2 IKQLQIHELRNLKQVNLTLAACNLI-VGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + +AR + E K +S L+ N+ + L+ HL + Sbjct: 61 -HHQSACTVWARTKFEESCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTLLID 119 Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS- 184 P SM + G S+ RR+ LD + F I P+ + + ++RL++ RN LL Sbjct: 120 PVSMSLLDEG-SISRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLPEL 178 Query: 185 -SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFC 241 + + Q+ ++ R+ + + + E + K+ P H LSL +L G FD Sbjct: 179 FAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQ-YLAG-FD---- 231 Query: 242 ALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDL---IVDYCDKAITIAHGST----- 289 Y K L KM D T IG HR+D+ I ++ TI +T Sbjct: 232 -----YTKPLSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSR 286 Query: 290 GEQKVVLVGIFLAHARLISNT-------TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 GE+K+++ + L+ +L+ + T P++L+D++ A LDED L + V + Sbjct: 287 GEKKLLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLP 346 Query: 343 SQIFMTGTD 351 Q +T + Sbjct: 347 CQAIITSLN 355 >gi|332304389|ref|YP_004432240.1| DNA replication and repair protein RecF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171718|gb|AEE20972.1| DNA replication and repair protein RecF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 363 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 87/361 (24%), Positives = 144/361 (39%), Gaps = 39/361 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + I RN + L +G NG GK++ILEAI +L GR FR + V Sbjct: 1 MKLDSVQIRNLRNLQQVSLNPSHGVNFILGINGSGKSSILEAIHYLGFGRSFRTTKHKHV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S F+ F + E + + I +R+ V + IN V + EL L + Sbjct: 61 IQSDQES-FTVFCQCTDQESVKRLGI---SRNINDVVSVSINGVRGNKISELVSQLPVQI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P I G RR+++D +F ++ + +L++ N L + GY D Sbjct: 117 FTPQSSDILLGSPKLRRKYIDWCLFHVEHPFLICSNSYTKLLKHNNALCRKHQVGYADPQ 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E +A+ G + R M+ L LI N H F FC Sbjct: 177 RIYWTE-HLAKYGETLTQFRNTMMERLIPLIT-----SNLEH------------FLPEFC 218 Query: 242 ALKEEY---------AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG--STG 290 Y + L D + +GPH++D+ K AH S G Sbjct: 219 VEISYYRGWEKGLDLIEALAKASDRDYRNGYISVGPHKADVRFKIDGKP---AHEVLSRG 275 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + ++++ + LA + + + T I LLD++ A LD KR + + +Q+F+T Sbjct: 276 QLRMLVAALQLATTQCLMSYTQKTCIFLLDDVGAELDAAKREVFIDKLLESNTQLFVTAI 335 Query: 351 D 351 + Sbjct: 336 E 336 >gi|268610500|ref|ZP_06144227.1| recombination protein F [Ruminococcus flavefaciens FD-1] Length = 382 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 161/372 (43%), Gaps = 18/372 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + + I F+N + D ++ I VG N GKTN+LEA+ LS + FR + D Sbjct: 3 VTYAEIDGFKNLKGVSFAPDPKYNIIVGANAQGKTNLLEAMWILSGCKSFRGSKEKDYIC 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + S V+ + + + I E + S + + +N V R L + Sbjct: 63 LDGQRMSSA---VKVQDSVREQKITFEMAKGGNSPKLIHLNGVKQRGTRALFDVFKCIAF 119 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 +P I G +RR F+D ++P + +M RN LL E ++ Sbjct: 120 IPDDTDIIKGSPEKRRSFIDMAASQLNPMFVMHLNKNNAIMNQRNALLKEISQRNASADV 179 Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQ 238 +E Q ++ G I+ R E ++ ++ + + +LSL + F++ Sbjct: 180 LEIWDRQASKEGAVISWMRNEYVSKINEICGRLYNTISGGAEELSLEYRSNVYKPEDFEK 239 Query: 239 SFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 EE Y ++L + + D + T G +R ++ + + GS G+ K + Sbjct: 240 PIGEEAEELYYRRLRETSEYDIRTGSTHSGVNRDEISIK-INGVSARDFGSQGQIKSAAL 298 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA A + + AP++ LD++ LDE+++ +F I+ D+ Q+F+T ++S Sbjct: 299 VMKLAQAEIYMKKSKDAPVVFLDDVMGELDENRQRFVFDIIRDM--QVFVTTPNESAL-- 354 Query: 358 LNE-TAKFMRIS 368 L E K +RIS Sbjct: 355 LPEIKGKILRIS 366 >gi|84621660|ref|YP_449032.1| recombination protein F [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123523723|sp|Q2P9L9|RECF_XANOM RecName: Full=DNA replication and repair protein recF gi|84365600|dbj|BAE66758.1| DNA replication and repair protein recF [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 362 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 79/342 (23%), Positives = 143/342 (41%), Gaps = 8/342 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + + G+ Sbjct: 6 LSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 EG + + + R +++ + + L L + P Sbjct: 66 NDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + SG RRRFLD +F ++P + R ++ RN LL +G + + + Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQGA-QPRMLDAWDHE 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +AE G + R+ + L ++ V P + LS F G + + +L A Sbjct: 185 LAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPG-WKRHEVSL----AD 238 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L R D + T GPHR+D + + D S G+ K+ + LA A + Sbjct: 239 ALLLARDRDRQNGYTSQGPHRADWMPHF-DVLPGKDALSRGQAKLTALACLLAQAEDFAF 297 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 P++ LD++ + LD + + + +Q+ +TGT+ Sbjct: 298 ERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITGTE 339 >gi|171741732|ref|ZP_02917539.1| hypothetical protein BIFDEN_00823 [Bifidobacterium dentium ATCC 27678] gi|283454962|ref|YP_003359526.1| Recombinational DNA repair ATPase RecF [Bifidobacterium dentium Bd1] gi|171277346|gb|EDT45007.1| hypothetical protein BIFDEN_00823 [Bifidobacterium dentium ATCC 27678] gi|283101596|gb|ADB08702.1| Recombinational DNA repair ATPase RecF [Bifidobacterium dentium Bd1] Length = 396 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 89/360 (24%), Positives = 146/360 (40%), Gaps = 55/360 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + +R++ L F+ I G NG+GKTNI+EA+ LS G R +S + Sbjct: 3 ISRLALDHYRSWERCVLDFEPGVNILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPLIE 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G S + A VE + + R R N + +R D + K +S+ Sbjct: 63 RGCAS-ATIRANVEDDRNRHSYEVTIAARGANRARIDGGNSLYMR--DVIGKIPSVSF-T 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182 P R+ SG RR F+++ + P + R+ F + + R LL + G FD + Sbjct: 119 PEDQRLVSGDPATRRNFINQAGALLIPHYMERLQQFTHVAKQRTALLKQLGDRGDFDPQY 178 Query: 183 -----CSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--- 231 S +E Q ++G+ + R +I LS E F + SL G Sbjct: 179 GRQAALSGLEIWTGQFIDIGMALTHDRATLIERLS---------EPFSRVYASLAGIDQQ 229 Query: 232 ----LDGKFDQSF-----CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 + FD+ A + ++++ G + + LIGPHR DL + Sbjct: 230 ALLHYEPSFDEVMLYDDPAAEISRHFQRIYPG---EVARGQNLIGPHRDDLTL------- 279 Query: 283 TIAHG-------STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 HG S GE + + + +A + PI++LD++ A LDE +R + Sbjct: 280 -TLHGMPAREFASNGEMWTMALALKMALYETVCADQQTKPIVILDDVFAQLDESRREQIL 338 >gi|307244804|ref|ZP_07526903.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253758|ref|ZP_07535612.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258215|ref|ZP_07539958.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854249|gb|EFM86455.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863242|gb|EFM95182.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867675|gb|EFM99520.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 360 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 154/355 (43%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + + Sbjct: 6 LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F R++ EG S+ ++ + L+IN + +L L + + P Sbjct: 66 EDFV-LHGRID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + +G RR FLD +F + +RL++ RN L + Y + W Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A+ ++ R + AL I + Q P +++ ++ F Q + + Sbjct: 178 DIELAKFAETVSQMRAKYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305 YA+ L G + D T+IGP ++D + + + S G+ K+++ + LA Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGE 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T K D LN+ Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339 >gi|300725946|ref|ZP_07059408.1| RecF protein [Prevotella bryantii B14] gi|299776797|gb|EFI73345.1| RecF protein [Prevotella bryantii B14] Length = 368 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 160/379 (42%), Gaps = 43/379 (11%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 +++ ++N + LV + F+G NGVGKTN+L+A+ +LS F ++Y + Sbjct: 6 ISVINYKNIRTADLVLSPKINCFIGQNGVGKTNLLDAVYYLS----FCHSAYNPMDS-QC 60 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS------ 123 + F +EG + + D ++ C ++ R+S Sbjct: 61 ITHDEDFFVLEG-------NYSTDNGDSENIYCGMKRGTKKHFKRNKKEYKRLSQHIGLI 113 Query: 124 ---WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFD 179 ++ PS + G S RR+ +D ++ D + + ++ + ++ RN LL E D Sbjct: 114 PLIFISPSDSFLIEGGSEGRRKLMDVVISQYDNTYMDALNNYNKALQQRNALLKMEDEPD 173 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S E +MAE G I R + +N L + E +K + +SL G+ Sbjct: 174 VSLLDIWEHEMAEQGTLIYQKRDDFVNKLVPVFQEIYRKISGDRETVSLRYVSHGQRGDL 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGSTGEQKVVL 296 + + + R D +L G HR DL I DY K GS G+ K + Sbjct: 234 YDVISRD--------RFKDRAVGYSLHGVHRDDLEMLIGDYQMKR----EGSQGQNKTFV 281 Query: 297 VGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSV 354 + + LA + T +G P+LLLD+I LD D+ + +V+ QIF+T T++ Sbjct: 282 LALKLAQFDFLKRTASGTTPLLLLDDIFDKLDADRVEQIVNLVSSNNYGQIFITDTNRDH 341 Query: 355 FDSL----NETAKFMRISN 369 D + N K + N Sbjct: 342 LDRILKHSNNVYKIFSVEN 360 >gi|320535591|ref|ZP_08035688.1| DNA replication and repair protein RecF [Treponema phagedenis F0421] gi|320147554|gb|EFW39073.1| DNA replication and repair protein RecF [Treponema phagedenis F0421] Length = 356 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 81/349 (23%), Positives = 163/349 (46%), Gaps = 28/349 (8%) Query: 7 IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + FL IS FRN ++ + A +G NG GKTN+LE++ S G FR + +++ Sbjct: 1 MPFLTISLVNFRNLSNKPIDLSAPEVFLIGKNGQGKTNLLESLYIASYGNSFRTRTDSEI 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHLRI 122 G+ + + E + ++ IS + + +++++ ++ D+V + L H + Sbjct: 61 YTTGTNEYSIRAMYKAEKTDSISIISKNGKKQIEKNLKKIRSRKDLVNTIPCVLFFHNDL 120 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + V S +R RR F+D+ + +P + + + L++ +N+ + E Sbjct: 121 DFAVGSPER--------RRFFIDQSLSMYNPFYLDLLQKYTVLLKTKNKEIKEQ--KRVL 170 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241 S++ Q+A +G +I R + I+ +++ + +K ++G + + + Sbjct: 171 LDSLDVQIASVGFEIISYRKKTIDEFNTIFSDIYEK---------VSGIDNVRIEYKPSW 221 Query: 242 --ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + EE L R+ D + + GPHR D I + + I+ STG+ +++ + + Sbjct: 222 KHSSAEEVMAHLAARREKDILLGTCMSGPHR-DKIHFVRNNELFISTASTGQLRLISLVL 280 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 A A + TG PILL+D++ LD DKR + ++ Q+F T Sbjct: 281 RTAQALFFTKITGKLPILLMDDVLLELDPDKRKSFTDLLPKY-DQLFCT 328 >gi|190149272|ref|YP_001967797.1| DNA replication and repair protein RecF [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262583|ref|ZP_07544214.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226737764|sp|B3GZJ3|RECF_ACTP7 RecName: Full=DNA replication and repair protein recF gi|189914403|gb|ACE60655.1| DNA replication and repair protein RecF [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872081|gb|EFN03794.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 360 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 155/355 (43%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + + Sbjct: 6 LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F AR++ EG S+ ++ + L+IN + +L L + + P Sbjct: 66 EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + +G RR FLD +F + +RL++ RN L + Y + W Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A+L ++ R AL I + Q P +++ ++ F Q + + Sbjct: 178 DIELAKLAEIVSQMRASYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305 YA+ L G + D T+IGP ++D + + + S G+ K+++ + LA Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCVLRLAQGE 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T K D LN+ Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339 >gi|307608753|emb|CBW98135.1| RecF recombinational DNA repair ATPase [Legionella pneumophila 130b] Length = 353 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 81/342 (23%), Positives = 148/342 (43%), Gaps = 29/342 (8%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I FRN AS L+ + G NG GKT++LEA+ LS FR + G Sbjct: 8 IHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVTPIISYGQNQ 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + FA + IS++ D ++ +N+ +L L + + + Sbjct: 68 -LNVFAHAYDE---STISVQKSITDGTQIK---LNNQFCCTTSQLAYALPCQVIYSDIFQ 120 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIE 187 I RR LD +F + + + D++R++ RN LL T +F W + Sbjct: 121 IIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHF-IPW----D 175 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 Q+++L +++ AR + + + + +I ++ + G ++ EE Sbjct: 176 QQLSQLANQLDKARNDYFLQWQPKFYQVL--SDLTNISCTIE-YYKGWDRKNAGQNIEEL 232 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARL 306 +K FD D T GPH++DLI++ + + H S G+QK++L+ + LA +L Sbjct: 233 LQKSFDS---DKNKLYTQYGPHQADLIINI--EQYRVKHTLSRGQQKIILIALKLAQGQL 287 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + + L+D+++A LD+ + L +T Q +T Sbjct: 288 LDKDC----LYLIDDLAAELDDYHQRNLIMHLTQQKGQFVIT 325 >gi|132245|sp|P24718|RECF_ACTPL RecName: Full=DNA replication and repair protein recF gi|38953|emb|CAA45173.1| RecF [Actinobacillus pleuropneumoniae] Length = 360 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 89/355 (25%), Positives = 154/355 (43%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + + Sbjct: 6 LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F AR++ EG S+ ++ + L+IN + +L L + + P Sbjct: 66 EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186 + +G RR FLD +F + +RL++ RN L + Y + W Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++A+L ++ R L I + Q P +++ ++ F Q + + Sbjct: 178 DIELAKLAEIVSQMRASYAEGLRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305 YA+ L G + D T+IGP ++D + + + S G+ K+++ + LA Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGE 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T K D LN+ Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339 >gi|220907659|ref|YP_002482970.1| recombination protein F [Cyanothece sp. PCC 7425] gi|254790473|sp|B8HVF7|RECF_CYAP4 RecName: Full=DNA replication and repair protein recF gi|219864270|gb|ACL44609.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7425] Length = 377 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 19/360 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRNY + F A TI VG N GK+N+LEA+ LS R R ++ Sbjct: 3 LKSLQLRYFRNYREQVIDFAAPKTILVGQNAQGKSNLLEAVELLSTLRSHRSHRDRELVL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR-ISWL 125 G + A +E G D+++ L + R+ L +N +R + HL + + Sbjct: 63 SGQEN-GQIIATIERDSGPLDLTLNLRSNGRRT---LMVNSEPVRRHLDFLGHLNAVEFS 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSS 181 +D + G ERR +LD ++ ++P + + + ++R RN L EG D + Sbjct: 119 SLDLD-LVRGTPAERRNWLDNVLIQLEPFYAHLLQQYNHVLRQRNAFLKSYQREGSLDHT 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ----KENFPHIKLSLTGFLDGKFD 237 + Q+A G ++ R ++ L+ L + Q K + + L+G Sbjct: 178 ELKLWDQQLASTGTRLTRRRQRLLVRLAPLATHWHQAISGKNEDLQVHYAPNVPLEGDEP 237 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + A+ + + +KL + +L+GPHR ++ + ++ +GS G+Q+ +++ Sbjct: 238 E---AIYQAFLEKLQQKAIAEQHQGTSLVGPHRDEVEL-IINQTPARQYGSQGQQRTLVL 293 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA +LI G P+LLLD++ A LD ++N L + D Q +T T FD+ Sbjct: 294 ALKLAELKLIEEVIGEPPLLLLDDVLAELDLQRQNQLLETIQD-RFQTLITTTHLGAFDA 352 >gi|269122839|ref|YP_003305416.1| DNA replication and repair protein RecF [Streptobacillus moniliformis DSM 12112] gi|268314165|gb|ACZ00539.1| DNA replication and repair protein RecF [Streptobacillus moniliformis DSM 12112] Length = 358 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 80/354 (22%), Positives = 152/354 (42%), Gaps = 26/354 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + S FRN R+ + G+N GKT+ +EAI F + GR FR ++ + Sbjct: 2 IKEIFFSGFRNLIDKRIKLSRGFNLIYGENAQGKTSFMEAIYFGATGRSFRTKKNNEMIK 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ------INDVVIRVVDELNKHL 120 S A I +KL+ + S+ + N I+ VD + L Sbjct: 62 YDSND--------------AKIFVKLDNTSNYSINLFKNEKKYFKNGEKIKYVDYIGDIL 107 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 +S++ ++ + S+ RR F + + I+ + ++D+E++++ RN++L + Sbjct: 108 AVSFIPEDVELVMGNPSI-RRGFFNYEISQINKEYLHLIVDYEKILKVRNKMLKDKKHKE 166 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQ 238 + ++ KI R E ++ L+ + Y N H KL FL D Sbjct: 167 ELYLIYNEKYIDICAKILKIRKEYVDELNKYLDKNYKDLFNIEHNFKLIYENFLKID-DV 225 Query: 239 SFCALKEEYAKKLFDGRKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S ++ +KL +++ D + G H+ + I + K + S GE+K ++ Sbjct: 226 SDIEENKKIIEKLLKSKEIYDIQVGYSNYGVHKDEYIFELNGKNAR-HYSSQGEKKSIVF 284 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + ++ LI PI L+D+I++ D ++N + + Q F+T T+ Sbjct: 285 ILKISEIELIEKKENKKPIFLMDDITSFFDNFRKNQIIHYFLEKEIQCFLTSTE 338 >gi|298345813|ref|YP_003718500.1| recombination protein F [Mobiluncus curtisii ATCC 43063] gi|298235874|gb|ADI67006.1| recombination protein F [Mobiluncus curtisii ATCC 43063] Length = 413 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 99/391 (25%), Positives = 165/391 (42%), Gaps = 38/391 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT--RI 67 L + FR+Y + L F A +FVG NG GKTN+LEA+++L+ R + A + I Sbjct: 6 LALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGLIFREI 65 Query: 68 G----SPSFFSTF---ARVEGMEGLADIS-----IKLETRDDRSVRCLQINDVVIRVVDE 115 G SP+ ARV L D +++E R+ R + IN +R Sbjct: 66 GDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNVRPRSL 124 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L HL P ++ G RR FLDR+ + P + ++ ++ R R L + Sbjct: 125 LG-HLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRGAYLKD 183 Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFP-HIKLSL 228 D S + + V++ R +I+ L+ + Y + P + L+ Sbjct: 184 VAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPSVYARIAGHPAPVGLTY 243 Query: 229 TGFLDGKFDQSFCALKEEYA----------KKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 + + S +E YA + L ++ L+GPHR +L + + Sbjct: 244 ADSVTKTLELSADEQREMYANPELLSSVFRQALAQCHADEARRGVNLVGPHRDELEL-HL 302 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 + S GE + + LA L+ P+LLLD++ A LDE +R AL + Sbjct: 303 NGLPVKGFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAALLWAI 362 Query: 339 TDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 D Q+F+T T + ++L+ A F R++ Sbjct: 363 -DQADQVFITSATGTEIPEALH--AAFYRVT 390 >gi|317503542|ref|ZP_07961566.1| recombination protein F [Prevotella salivae DSM 15606] gi|315665354|gb|EFV04997.1| recombination protein F [Prevotella salivae DSM 15606] Length = 366 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 90/363 (24%), Positives = 158/363 (43%), Gaps = 32/363 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L++ ++N ++ ++ F+G NGVGKTN+L+A+ +LS F R+++ + Sbjct: 3 LKRLSVINYKNIREATILLSSKLNCFIGSNGVGKTNVLDAVHYLS----FCRSAFNPIDA 58 Query: 67 ---IGSPSFF---STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + FF ++ EG E +K T+ + + N R L++H+ Sbjct: 59 QVITHNQDFFVLDGKYSSDEGDEEQIYCGMKRGTK-----KHFKRNKKEYR---RLSQHI 110 Query: 121 RISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EG 176 + LV P+ + G S ERRR LD ++ D + + + + ++ RN LL E Sbjct: 111 GLIPLVFASPADSILIEGGSEERRRLLDVVISQYDHAYIEALSAYNKALQQRNALLKMEE 170 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 D + E QMA G I R + L + + + H ++L G+ Sbjct: 171 EPDKALLEIWEEQMALNGEIIYQKRNSFVERLVPVFQDIYTHISGGHETVALNYVSHGQR 230 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ + R D +L G HR DL + D GS G+ K Sbjct: 231 GPLLDTIQRD--------RHRDRAVGYSLHGVHRDDLEM-LLDGYQMKREGSQGQHKTYA 281 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVF 355 + + LA + T+ P+LLLD+I LD ++ + ++V D QIF+T T++ Sbjct: 282 LALKLAQFDFLRRTSNNTPLLLLDDIFDKLDANRVEKIVQLVGGDEFGQIFITDTNRDHL 341 Query: 356 DSL 358 D + Sbjct: 342 DQI 344 >gi|326560703|gb|EGE11071.1| DNA replication and repair protein RecF [Moraxella catarrhalis 46P47B1] Length = 402 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 162/369 (43%), Gaps = 39/369 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I E RN + L A + I VG NG GKT++LEA+ LS G+ FR R Sbjct: 2 IKQLQIHELRNLKQVNLTLAACNLI-VGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + +AR + E K +S L+ N+ + L+ HL + Sbjct: 61 -HHQSACTVWARTKFEESCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTLLID 119 Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS- 184 P SM + G S RR+ LD + F I P+ + + ++RL++ RN LL Sbjct: 120 PVSMSLLDEG-STSRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLPEL 178 Query: 185 -SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFC 241 + + Q+ ++ R+ + + + E + K+ P H LSL +L G FD Sbjct: 179 FAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQ-YLAG-FD---- 231 Query: 242 ALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDL---IVDYCDKAITIAHGST----- 289 Y K L KM D T IG HR+D+ I ++ TI +T Sbjct: 232 -----YTKPLSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSR 286 Query: 290 GEQKVVLVGIFLAHARLISNT-------TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 GE+K+++ + L+ +L+ + T P++L+D++ A LDED L + V + Sbjct: 287 GEKKLLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLP 346 Query: 343 SQIFMTGTD 351 Q +T + Sbjct: 347 CQAIITSLN 355 >gi|317481502|ref|ZP_07940567.1| DNA replication and repair protein RecF [Bacteroides sp. 4_1_36] gi|316902348|gb|EFV24237.1| DNA replication and repair protein RecF [Bacteroides sp. 4_1_36] Length = 370 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 151/355 (42%), Gaps = 16/355 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + R Sbjct: 3 LKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62 Query: 67 IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF E +G + I ++ R + + + R+ D + L + + Sbjct: 63 -HDADFFVIQGFYEAADGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVMV 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184 P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 119 SPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEELFL 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 E MA+ G + R I + + + K+ L+ + LK Sbjct: 179 VWEEMMAQAGEVVFRKREAFIREFIPIFQSFYSFISQDREKVGLSYDSHARDASLLEVLK 238 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 239 E--------SRVRDQIMGYSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQF 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 290 DFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDSFGQIFITDTNREHLDRI 344 >gi|326571822|gb|EGE21828.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC7] Length = 402 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 162/369 (43%), Gaps = 39/369 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I E RN + L A + I VG NG GKT++LEA+ LS G+ FR R Sbjct: 2 IKQLQIHELRNLKQVNLTLAACNLI-VGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + +AR + E K +S L+ N+ + L+ HL + Sbjct: 61 -HHQSACTVWARTKFEESCTLAIQKKLDETGKSDSILRFNEHTVSTQSALSFHLPTLLID 119 Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS- 184 P SM + G S RR+ LD + F I P+ + + ++RL++ RN LL Sbjct: 120 PVSMSLLDEG-STSRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLPEL 178 Query: 185 -SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFC 241 + + Q+ ++ R+ + + + E + K+ P H LSL +L G FD Sbjct: 179 FAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQ-YLAG-FD---- 231 Query: 242 ALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDL---IVDYCDKAITIAHGST----- 289 Y K L KM D T IG HR+D+ I ++ TI +T Sbjct: 232 -----YTKPLSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSR 286 Query: 290 GEQKVVLVGIFLAHARLISNT-------TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 GE+K+++ + L+ +L+ + T P++L+D++ A LDED L + V + Sbjct: 287 GEKKLLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLP 346 Query: 343 SQIFMTGTD 351 Q +T + Sbjct: 347 CQAIITSLN 355 >gi|296112233|ref|YP_003626171.1| DNA replication and repair protein RecF [Moraxella catarrhalis RH4] gi|295919927|gb|ADG60278.1| DNA replication and repair protein RecF [Moraxella catarrhalis RH4] Length = 402 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 162/369 (43%), Gaps = 39/369 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I E RN + L A + I VG NG GKT++LEA+ LS G+ FR R Sbjct: 2 IKQLQIHELRNLKQVNLTLAACNLI-VGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + +AR + E K +S L+ N+ + L+ HL + Sbjct: 61 -HHQSACTVWARTKFEESCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTLLID 119 Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS- 184 P SM + G S RR+ LD + F I P+ + + ++RL++ RN LL Sbjct: 120 PVSMSLLDEG-STSRRQILDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLPEL 178 Query: 185 -SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFC 241 + + Q+ ++ R+ + + + E + K+ P H LSL +L G FD Sbjct: 179 FAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQ-YLAG-FD---- 231 Query: 242 ALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDL---IVDYCDKAITIAHGST----- 289 Y K L KM D T IG HR+D+ I ++ TI +T Sbjct: 232 -----YTKPLSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSR 286 Query: 290 GEQKVVLVGIFLAHARLISNT-------TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 GE+K+++ + L+ +L+ + T P++L+D++ A LDED L + V + Sbjct: 287 GEKKLLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLP 346 Query: 343 SQIFMTGTD 351 Q +T + Sbjct: 347 CQAIITSLN 355 >gi|237736250|ref|ZP_04566731.1| DNA replication and repair protein recF [Fusobacterium mortiferum ATCC 9817] gi|229421598|gb|EEO36645.1| DNA replication and repair protein recF [Fusobacterium mortiferum ATCC 9817] Length = 365 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 78/350 (22%), Positives = 156/350 (44%), Gaps = 23/350 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 +N FRN + F + +F G NG GKT++LEA+ F + G+ FR + ++ + G Sbjct: 6 INYINFRNLIDGSVKFFPKLNLFFGKNGQGKTSLLEAVYFNATGKSFRTSKANEMMKYGV 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 T + + + + ++ ++ D++ V DE L + +P Sbjct: 66 K---RTGVYIVYRDNIGEKTLTVKFNDNKKEYYYNNKKV---PYDEFYGKLNVVTYIPED 119 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR F D + + + + + ++ +L++ RN+ L E + E + Sbjct: 120 IVLITGSPSIRRTFFDGEIAQTNSEYFQDLKNYNKLLKIRNKYLKEERTKDTEYLVYEDE 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKE-- 245 + G K+ R+E + +S ++ +K +N + LS L G + +LKE Sbjct: 180 FIKYGAKVIEKRLEYVQKISIILNLNYRKLFDNKKELSLSYECHL-GNIKK--LSLKEIE 236 Query: 246 ----EYAKKLFDGRKMDSMSRRTLIGPHRSD-LIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E KK F K S L GP + D L + +A + A S GE+K ++ + Sbjct: 237 KLLREKIKKNFSQEKRYGFS---LCGPQKDDFLFILNGHEAKSTA--SQGEKKSIIFSLK 291 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 L+ ++ P+L++D+IS++ D +++ ++ + Q+ ++ T Sbjct: 292 LSEIDMVIREKKENPVLIIDDISSYFDSNRKESILNYLEKRNIQVLVSST 341 >gi|306823994|ref|ZP_07457368.1| recombination protein F [Bifidobacterium dentium ATCC 27679] gi|309801974|ref|ZP_07696088.1| DNA replication and repair protein RecF [Bifidobacterium dentium JCVIHMP022] gi|304552992|gb|EFM40905.1| recombination protein F [Bifidobacterium dentium ATCC 27679] gi|308221422|gb|EFO77720.1| DNA replication and repair protein RecF [Bifidobacterium dentium JCVIHMP022] Length = 396 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 147/362 (40%), Gaps = 55/362 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R++ L F+ I G NG+GKTNI+EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWERCVLDFEPGVNILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S + A VE + + R R N + +R D + K +S+ Sbjct: 61 IERGCAS-ATIRANVEDDRNRHSYEVTIAARGANRARIDGGNSLYMR--DVIGKIPSVSF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P R+ SG RR F+++ + P + R+ F + + R LL + G FD Sbjct: 118 -TPEDQRLVSGDPATRRNFINQAGALLIPHYMERLQQFTHVAKQRTALLKQLGDRGDFDP 176 Query: 181 SW-----CSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF- 231 + S +E Q ++G+ + R +I LS E F + SL G Sbjct: 177 QYGRQAALSGLEIWTGQFIDIGMALTHDRATLIERLS---------EPFSRVYASLAGTD 227 Query: 232 ------LDGKFDQSF-----CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 + FD+ A + ++++ G + + LIGPHR DL + Sbjct: 228 QQALLRYEPSFDEVMLYDDPAAEISRHFQRIYPG---EVARGQNLIGPHRDDLTL----- 279 Query: 281 AITIAHG-------STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 HG S GE + + + +A + PI++LD++ A LDE +R Sbjct: 280 ---TLHGMPAREFASNGEMWTMALALKMALYETVCADQQTKPIVILDDVFAQLDESRREQ 336 Query: 334 LF 335 + Sbjct: 337 IL 338 >gi|257456817|ref|ZP_05622001.1| DNA replication and repair protein RecF [Treponema vincentii ATCC 35580] gi|257445823|gb|EEV20882.1| DNA replication and repair protein RecF [Treponema vincentii ATCC 35580] Length = 358 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 41/340 (12%) Query: 7 IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + FL+IS FRN + + A VG NG GKTN+LEA+ S G FR + A++ Sbjct: 1 MPFLSISPYNFRNLENKAIDLSAPEVFLVGQNGQGKTNLLEALYLASYGNSFRTRNEAEI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVDELNK-HLRI 122 + + + I + + ++RS + D + L K H R Sbjct: 61 YKKNTNEY--------------SIRVLFKENEERSHNISIISKDKKKIIEKNLKKIHDRK 106 Query: 123 SWL--VPSM-----DRIFSGLSMERRR-FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 ++ +P + D F+ S ERRR F+D+ + D + + +F +L++ RN +L Sbjct: 107 DFISTIPCILFCHDDLDFATGSPERRRFFIDQSLSLYDSSYIDILRNFTKLLKSRNLVLK 166 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGF 231 E S I+AQ+ +G++I R +E N + S + E + + I S + Sbjct: 167 EK--KSEILDVIDAQLIPIGLQIMERRRALIESFNNIFSSLYENIGGIDSVMIDYS-PSW 223 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 FD+ +L E+ R++D ++ GPHR D I +K + S G+ Sbjct: 224 KSANFDEVLISLIEK--------RQLDFTMNTSMSGPHR-DKIRFVRNKKPFVQTASMGQ 274 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 Q+++ + + A A + TT P+LL+D++ LD +KR Sbjct: 275 QRLLSLVLRAAQAYFYTETTKRLPVLLMDDVLLELDPEKR 314 >gi|189462141|ref|ZP_03010926.1| hypothetical protein BACCOP_02823 [Bacteroides coprocola DSM 17136] gi|189431114|gb|EDV00099.1| hypothetical protein BACCOP_02823 [Bacteroides coprocola DSM 17136] Length = 373 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 156/366 (42%), Gaps = 37/366 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + + F + +G NG+GKTN+L+A+ +LS + A D Sbjct: 3 LKRISILNYKNLEQVEVAFSRKMNCIIGKNGMGKTNLLDAVYYLSFCKSATNA--IDSQN 60 Query: 67 I-GSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 I FF E EG + + L+ R + + + + L+ H+ + Sbjct: 61 ILHDRDFFVVQGFYETDEGEPEEVYCGLKRRQKKQFKRNK------KEYSRLSDHIGLIP 114 Query: 125 LV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEG 176 LV P+ + +G S ERRRF+D ++ D + +I + + + RN LL E Sbjct: 115 LVMVSPADSWLIAGGSEERRRFIDVVISQFDREYLEALIRYNKALLQRNSLLKADVEPEE 174 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDG 234 W E MA G + R I+ + Y ++ + LS Sbjct: 175 ELMLVW----EEMMAASGETVYAKRKAFIDEFIPVFQSYYSYISQDREQVSLSYESH--- 227 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 A K ++L + R+ D + + G H+ DLI+ D I GS G+ K Sbjct: 228 -------AAKGNLLEQLKEVRQRDRILGYSTRGIHKDDLIMQLGDFPIK-REGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK 352 L+ + LA + T + PI+LLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLIALKLAQFEFLKRTGSRTTPIVLLDDIFDKLDASRVEQIVKLVAGDSFGQIFVTDTNR 339 Query: 353 SVFDSL 358 D + Sbjct: 340 DHLDKI 345 >gi|315654387|ref|ZP_07907295.1| recombination protein F [Mobiluncus curtisii ATCC 51333] gi|315491422|gb|EFU81039.1| recombination protein F [Mobiluncus curtisii ATCC 51333] Length = 413 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 99/395 (25%), Positives = 165/395 (41%), Gaps = 46/395 (11%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA------- 62 L + FR+Y + L F A +FVG NG GKTN+LEA+++L+ R + A Sbjct: 6 LALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGLIFREI 65 Query: 63 -DVTRIGSPSFFSTF-ARVEGMEGLADIS-----IKLETRDDRSVRCLQINDVVIRVVDE 115 D R + S ARV L D +++E R+ R + IN +R Sbjct: 66 GDTVRSPATSRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNVRPRSL 124 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L HL P ++ G RR FLDR+ + P + ++ ++ R R L + Sbjct: 125 LG-HLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRGAYLKD 183 Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFP-HIKLSL 228 D S + + V++ R +I+ L+ + + Y + P + L+ Sbjct: 184 VAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPQVYARIAGHPAPVGLTY 243 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR--------------TLIGPHRSDLI 274 + + S +E YA + S+ R+ L+GPHR +L Sbjct: 244 ADSVTKTLELSADEQREMYANPEL----LSSVFRQALARRRADEARRGVNLVGPHRDELE 299 Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 + + + S GE + + LA L+ P+LLLD++ A LDE +R AL Sbjct: 300 L-HLNGLPVKGFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAAL 358 Query: 335 FRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 + D Q+F+T T + ++L+ A F R++ Sbjct: 359 LWAI-DQADQVFITSATGTEIPEALH--AAFYRVT 390 >gi|119503575|ref|ZP_01625658.1| recombination protein F [marine gamma proteobacterium HTCC2080] gi|119460637|gb|EAW41729.1| recombination protein F [marine gamma proteobacterium HTCC2080] Length = 376 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 85/362 (23%), Positives = 167/362 (46%), Gaps = 42/362 (11%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + + +++ + I RN ++ RLV ++ + G NG GK++I+EA+S LS GR FR +S Sbjct: 4 LHDNFRLESVYIDGVRNLSAQRLVMGSEINLISGPNGSGKSSIVEALSMLSTGRSFRSSS 63 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-----NDVVIRV--- 112 V + G D ++ + R SVR L I ++ +R+ Sbjct: 64 VRSVIQ----------------HGRDDCIVQAQVRYRGSVRSLGIRRSKTGELTLRLDGE 107 Query: 113 ----VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + E + + PS +G RRR +D +F ++ ++R+++ Sbjct: 108 PMSSLAEFAAQVPTIIIDPSSTDTITGPPDSRRRLIDGTLFHVEHGFLDVWRRYQRVLKQ 167 Query: 169 RNRLLTEGYF--DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 RN +L G W +++ +G + RV +++ L + + + N Sbjct: 168 RNAMLRRGMMRGQDPWLR----ELSRVGSDLTNYRVGLVSRLGPVFKSILAELNSALADT 223 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 L F G +D S +L+ A+ + D T +GPHR+DL + + ++++ Sbjct: 224 ELV-FRFG-WDASL-SLEAGLARST----ESDIAQGFTHVGPHRADLRLQWQGRSMSDVF 276 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S G+ K+ ++ + LA R+++ + G AP+ L+D+++A LD+ + R++ SQ+ Sbjct: 277 -SRGQLKLAVIALRLAQGRVLAESGGGAPLYLVDDLTAELDDHHALQVCRMLEQTSSQVV 335 Query: 347 MT 348 +T Sbjct: 336 LT 337 >gi|166709898|ref|ZP_02241105.1| recombination protein F [Xanthomonas oryzae pv. oryzicola BLS256] Length = 365 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 78/342 (22%), Positives = 143/342 (41%), Gaps = 8/342 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + + G+ Sbjct: 3 LSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + EG + + + R +++ + + L L + P Sbjct: 63 NNLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCSALAVVTFEPGS 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + SG RRRFLD +F ++P + R ++ RN LL +G + + + Sbjct: 123 HVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQGA-QPRMLDAWDHE 181 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +AE G + R+ + L ++ V P + LS F G + + +L A Sbjct: 182 LAESGETLTSRRMRYLERLQDRLIP-VADAIAPTLGLSALTFAPG-WKRHEVSL----AD 235 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L R D + T GPHR+D + + D S G+ K+ + LA A + Sbjct: 236 ALLLARDRDRQNGYTSQGPHRADWMPHF-DVLPGKDALSRGQAKLTALACLLAQAEDFAF 294 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 P++ LD++ + LD + + + +Q+ +T T+ Sbjct: 295 ERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQVLITATE 336 >gi|254444638|ref|ZP_05058114.1| hypothetical protein VDG1235_2879 [Verrucomicrobiae bacterium DG1235] gi|198258946|gb|EDY83254.1| hypothetical protein VDG1235_2879 [Verrucomicrobiae bacterium DG1235] Length = 358 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 87/362 (24%), Positives = 155/362 (42%), Gaps = 42/362 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K K + +S +RN RL DA +G NG GKTN+LEAI +++ R FR + + Sbjct: 1 MKFKAIGVSNYRNIKLARLNLDADRVFLLGRNGQGKTNLLEAIGYVTSLRAFR--ARENE 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADI--SIKLETRDDRSVRCL------QIN---DVVIRVV 113 +G S G A+I I+ E +D R L +++ + V R Sbjct: 59 ILLGPES------------GQAEIVYEIEHEEFEDSEARVLIKRKGKEVSLDGEAVRRAS 106 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 D + + ++ ++ I G RRRF+D + ID + + +++ ++ RN LL Sbjct: 107 DFVGRFPAVTLSSEDLN-IVRGSPGGRRRFIDTFLCGIDREYYVALQRYQKCVQERNALL 165 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 G EA++ + + R +I+ L S+ + + +L+G + Sbjct: 166 KRGS-SMELMRPFEAELIGPALAVIRKRDSVISELGSMASRFYE---------TLSGSAE 215 Query: 234 G---KFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + + E+ + + D RK D + T GPHR D + ++ T S Sbjct: 216 AIGVDYKPNAYPDDEDAYRAMLDRNRKRDEIMHSTSKGPHRDDFELTLNGRSAT-DFASD 274 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ + + + A G P LL+D++ LD +R + + D Q+ TG Sbjct: 275 GQQRSIALSLAFATIAYWRERFGVCPALLIDDVLGELDPVRRERFWNAL-DESIQLIATG 333 Query: 350 TD 351 T+ Sbjct: 334 TE 335 >gi|219871719|ref|YP_002476094.1| recombination protein F [Haemophilus parasuis SH0165] gi|254790479|sp|B8F744|RECF_HAEPS RecName: Full=DNA replication and repair protein recF gi|219691923|gb|ACL33146.1| DNA replication and repair protein RecF [Haemophilus parasuis SH0165] Length = 361 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 76/342 (22%), Positives = 153/342 (44%), Gaps = 22/342 (6%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I+ FRN ++ L + F+G NG GKT++LEAI +L G+ F+ + + Sbjct: 8 INNFRNLTAVDLELNHGFNFFIGANGSGKTSLLEAIFYLGHGKSFKSHISNRIIKYNQEE 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F+ F +++ E + S+ L+ ++ + L+IN + + +L L + + P Sbjct: 68 -FTLFGKIQ--EEKHECSVGLQ-KNRQGETILRINGESNKKIADLAYLLPMQVITPEGLT 123 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191 + +G + RR FLD +F + +RL++ RN L + + + +++ Sbjct: 124 LLNGGPIYRRAFLDWGLFHQNTDFYHNWNSLKRLLKQRNAALVQTRHYNE-LKPWDVELS 182 Query: 192 ELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFCALKEEYA 248 + ++ +R + + I+ Y++K P ++++ T F G + +YA Sbjct: 183 KFAQIVSQSRAVYVES----ILTYIEKNCQFFLPELEITAT-FYQG------WEKERDYA 231 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLI 307 L G + D T++GP ++D + + + S G+ K+++ + LA Sbjct: 232 DLLAQGFERDRSVGYTMVGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGEYF 289 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 I L+D+ ++ LD K L + GSQ+F+T Sbjct: 290 IAQKNRQCIFLIDDFASELDTQKCELLADRLYQSGSQVFVTA 331 >gi|237802507|ref|YP_002887701.1| recombination protein F [Chlamydia trachomatis B/Jali20/OT] gi|231273741|emb|CAX10521.1| DNA replication and repair protein [Chlamydia trachomatis B/Jali20/OT] Length = 365 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 129/320 (40%), Gaps = 8/320 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY LRL + G N GKTN+LEA+ LS GR FR + D Sbjct: 1 MRVHSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF +E + ++ L + D+ + + + I + EL + Sbjct: 61 IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 I G ERRRFLD ++ ++ + + + + RN + + S Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQ--NQKAIS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + G + R E L+++ + L L + + + Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y ++L D T++GPHR +L++ D + S G++ +L + A Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVA-KFSSEGQKHSLLAVLRFAEC 292 Query: 305 RLISNTTGFAPILLLDEISA 324 + PIL +D+I A Sbjct: 293 VYLQEEFCIHPILCMDDIHA 312 >gi|224538410|ref|ZP_03678949.1| hypothetical protein BACCELL_03304 [Bacteroides cellulosilyticus DSM 14838] gi|224519969|gb|EEF89074.1| hypothetical protein BACCELL_03304 [Bacteroides cellulosilyticus DSM 14838] Length = 370 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 157/365 (43%), Gaps = 36/365 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F + F G NG+GKTN+L+AI FLS F ++S Sbjct: 3 LKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAIYFLS----FCKSS------ 52 Query: 67 IGSP----------SFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDE 115 G+P FF E +G L +I ++ R + + + R+ D Sbjct: 53 -GNPIDSQNIRHDQEFFVIQGFYEAPDGTLEEIYCGMKRRQKKQFK--RNKKEYTRLSDH 109 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174 + L + + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 110 IG-FLPLVMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKS 168 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 E + E MA+ G + R I+ + + + ++ LT Sbjct: 169 EVPVEEELFLIWEEMMAQAGEIVFRKREAFISEFIPIFQSFYSFISQDKEQVGLT----- 223 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 +D A + R D + +L G H+ +L + D I GS G+ K Sbjct: 224 -YDSH--ARDASLLDVIKASRVRDQIMGYSLHGIHKDELNMLLGDFPIK-REGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353 LV + LA + T P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLVALKLAQFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNRE 339 Query: 354 VFDSL 358 D + Sbjct: 340 HLDRI 344 >gi|170078873|ref|YP_001735511.1| recombination protein F [Synechococcus sp. PCC 7002] gi|226737845|sp|B1XJ90|RECF_SYNP2 RecName: Full=DNA replication and repair protein recF gi|169886542|gb|ACB00256.1| DNA repair and genetic recombination protein [Synechococcus sp. PCC 7002] Length = 388 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 72/324 (22%), Positives = 151/324 (46%), Gaps = 23/324 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY + F AQ TI +G+N GK+N+LEA+ L+ + R + AD+ + Sbjct: 3 LQTLHLRNFRNYQHQHVDFSAQKTILIGNNAQGKSNLLEAVELLASLKTHRTSRDADLVK 62 Query: 67 IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRIS 123 G + AR++ G + L R ++ R L++N +++ R +D L + Sbjct: 63 QGEAT-----ARIQAQIQRGYGTVDFDLLLR-NQGGRTLKLNGEILRRQLDGLGTLNAVE 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175 + +D + G RR+++D ++ ++P + R + +++++++ RN LL + Sbjct: 117 FSCLDLDLVRGGPDC-RRQWIDNLLIQLEPVYARILQEYQQVLKQRNALLRTAKKLHRNQ 175 Query: 176 GYFDSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + + + Q+A G ++ R + L L + + + L +T Sbjct: 176 AAIPTDLTQQLTLWDLQLAATGSRVTRRRSRGLLRLMPLAQAWHRDISSQTETLEITYCP 235 Query: 233 DGKFDQ-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + + Q +++ K+ R+ + +++GPHR D I + +GS G+ Sbjct: 236 NIPWQQDDPHHVQQACLDKIEQRRQAEQHQGSSMVGPHR-DEIEFSINGTPARFYGSQGQ 294 Query: 292 QKVVLVGIFLAHARLISNTTGFAP 315 Q+ +++ + LA +LI G P Sbjct: 295 QRTLVLALKLAELQLIETIIGEPP 318 >gi|238765486|ref|ZP_04626405.1| DNA replication and repair protein recF [Yersinia kristensenii ATCC 33638] gi|238696310|gb|EEP89108.1| DNA replication and repair protein recF [Yersinia kristensenii ATCC 33638] Length = 323 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 84/325 (25%), Positives = 138/325 (42%), Gaps = 14/325 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L + VG NG GKT++LEAI L GR FR V R Sbjct: 6 LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E + + + + D VR I+ V EL + L + + P Sbjct: 66 AGFI-LHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD F +P + +RL++ RN L + + + + + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYAQIRAWDQE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + L +I+ R +A+++ I P LS + F G +S +Y + Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + D T +GPH++D + D S G+ K+++ + LA ++ Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291 Query: 310 TTGFAPILLLDEISAHLDEDKRNAL 334 +G + LLD+ ++ LD +R L Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLL 316 >gi|227498786|ref|ZP_03928926.1| recombination protein F [Acidaminococcus sp. D21] gi|226904238|gb|EEH90156.1| recombination protein F [Acidaminococcus sp. D21] Length = 377 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 81/349 (23%), Positives = 142/349 (40%), Gaps = 38/349 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 + + FRNY L + T+ G N GKTN+LE + + + G FR ++ + G Sbjct: 1 MRLHHFRNYGDLTMNLSHDLTVIYGRNAQGKTNLLEGLYYAAMGFSFRSRHDEELVKFGE 60 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + + G + +K R+ + Q N I + L + P Sbjct: 61 TDCAAEVTYCDRY-GENRLLVKRIQEGKRTRKQAQRNGTPISPKEHYGS-LNLVLFTPDD 118 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL---------LTEGY--- 177 ++ G RRRFLD + + + ++ R+++ RNR L EG Sbjct: 119 LQLVKGDPSLRRRFLDMEIAQTSRFYYEALQNYNRVLQQRNRFLRHCRDQEKLDEGQLFV 178 Query: 178 FDSSWCSSIEA-------QMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKL 226 +D + S M E+ + + + + Y+QK E P L Sbjct: 179 WDEALSRSAAVIVFERLKAMEEIERAAGLVYGTITQDREKMTLSYLQKRSDGEGVPPKGL 238 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 SL+ + Q+F Y ++L ++D + T +GPHR DL + + + + Sbjct: 239 SLSEW------QAF------YQEELKKRHRLDYVRGYTSMGPHRDDLEILQEGRPLR-SF 285 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 GS G+Q+ + + L+ I ++ PILLLD++ + LDE +R L Sbjct: 286 GSQGQQRTAALALKLSELEFIFHSKEEYPILLLDDVLSELDEGRRRMLL 334 >gi|258650275|ref|YP_003199431.1| DNA replication and repair protein RecF [Nakamurella multipartita DSM 44233] gi|258553500|gb|ACV76442.1| DNA replication and repair protein RecF [Nakamurella multipartita DSM 44233] Length = 380 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 87/360 (24%), Positives = 157/360 (43%), Gaps = 26/360 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +++FR++ ++ + + VG NG GKTN++EA+ +L+ R A+ A + R Sbjct: 3 VRHLALTDFRSWPAVDVPLQPGVNVLVGRNGTGKTNLMEALGYLATLGSHRVATDAPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + R + G ++ +++E DR +IN + +L LR Sbjct: 63 SGC---TRSILRAAVVSGDRELLLEMEIARDRR-NTARINRAPLTRPRDLLGVLRTVLFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYF----DSS 181 P + G ERRRFLD ++ PR D++R+++ RN LL T G D S Sbjct: 119 PEDLALVRGDPTERRRFLDEVLMMRAPRLAGVKADYDRVLKQRNALLKTAGAARRTGDLS 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINAL-SSLIMEYVQKENFPHI-----KLSLTGFLDGK 235 + + + G ++ AR+ ++ L + Y + + ++ D Sbjct: 179 TLDAWDEHLVAAGAELIHARLALVAQLRPPVTAAYADVAGADQVVDLVYRSTVPLGPDPA 238 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRR------TLIGPHRSDL-IVDYCDKAITIAHGS 288 A+ + A ++ M + L+GPHR DL ++ D A + S Sbjct: 239 SAAGTIAVPDRAALAEAMLAELGRMRSKELERGICLVGPHRDDLELLLGTDPA--KGYAS 296 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ + G P+L+LD++ A LD +R L +V Q+ +T Sbjct: 297 HGESWSFALALRLASFSLL-RSDGVDPVLILDDVFAELDAGRRGRLAELVAG-AEQVLIT 354 >gi|327334561|gb|EGE76272.1| RecF protein [Propionibacterium acnes HL097PA1] Length = 394 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 87/369 (23%), Positives = 162/369 (43%), Gaps = 32/369 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ + R Sbjct: 3 VERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 +G+ G + + +++E R+ R + R E+ LR Sbjct: 63 LGADQAVVRGRVRAGADDARSLLLEVEINARRANRARINRAPLTR-PREILGVLRTVVFS 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEGYF 178 P+ + G +RR FLD +V PR D+ER+++ RN LL + G Sbjct: 122 PNDLAVVRGDPSDRRTFLDGLVMTRWPRMAAVKADYERVLKQRNALLKSLSGKGRSAGAE 181 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF------- 231 + + ++A +G ++ AR++ ++A+ L +E P L+ + Sbjct: 182 IGATMDIWDDELATIGAELLSARLDTLSAVMPLT-SAAYREIAPVNDLATASYKSTIDLE 240 Query: 232 ------LDGKFDQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKA 281 +GK + + E A + R+ D + R TL+GP R D+++ + + Sbjct: 241 GLWSPPQEGKNPEPID--RNELAHRFLAALATRRADELIRGVTLVGPQRDDIVL-HIGEM 297 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 298 PAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ- 355 Query: 342 GSQIFMTGT 350 Q+ +T Sbjct: 356 ADQVLVTAA 364 >gi|224023819|ref|ZP_03642185.1| hypothetical protein BACCOPRO_00535 [Bacteroides coprophilus DSM 18228] gi|224017041|gb|EEF75053.1| hypothetical protein BACCOPRO_00535 [Bacteroides coprophilus DSM 18228] Length = 374 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 158/362 (43%), Gaps = 29/362 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F + +G NG+GKTN+++A+ +LS F +++ V Sbjct: 3 LKRISILNYKNLEQVDLAFSRKMNCIIGRNGMGKTNLMDAVYYLS----FCKSATNPVDS 58 Query: 67 IG---SPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 FF E +G ++ L+ R + + + + L+ H+ + Sbjct: 59 QNICHDQDFFVVQGFYETDDGDPEEVYCGLKRRQKKQFKRNK------KEYTRLSDHIGL 112 Query: 123 SWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYF 178 LV P+ + +G S ERRRF+D ++ D + +I + + + RN LL E Sbjct: 113 IPLVMVSPADSLLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALLQRNTLLKAEVEP 172 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + + E MA G + R E I+ + Y + ++SL Sbjct: 173 EEELMAVWEEAMAASGEVVYRKRREFIDEFIPVFQSYYSYISQGREQVSLA--------Y 224 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 A + + L R+ D + +L G H+ DLI+ D I GS G+ K L+ Sbjct: 225 ESHAAEGNLLELLAASRQRDRIMGYSLKGVHKDDLIMQLGDFPIK-REGSQGQNKTYLIA 283 Query: 299 IFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD 356 + LA + T + PI+LLD+I LD + + ++V D QIF+T T++ D Sbjct: 284 LKLAQFEFLKRTGSHTTPIVLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLD 343 Query: 357 SL 358 + Sbjct: 344 KI 345 >gi|189467918|ref|ZP_03016703.1| hypothetical protein BACINT_04310 [Bacteroides intestinalis DSM 17393] gi|189436182|gb|EDV05167.1| hypothetical protein BACINT_04310 [Bacteroides intestinalis DSM 17393] Length = 370 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 91/365 (24%), Positives = 157/365 (43%), Gaps = 36/365 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F + F G NG+GKTN+L+AI FLS F ++S Sbjct: 3 LKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAIYFLS----FCKSS------ 52 Query: 67 IGSP----------SFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDE 115 G+P FF E ++G +I ++ R + + + R+ D Sbjct: 53 -GNPIDSQNIRHDQEFFVIQGFYEALDGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDH 109 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174 + L + + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 110 IG-FLPLVMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKS 168 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 E + E MA+ G + R I+ + + + ++ LT Sbjct: 169 EVPVEEELFLIWEEMMAQAGEIVFRKREAFISEFIPIFQSFYSFISQDKEQVGLT----- 223 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 +D A + R D + +L G H+ +L + D I GS G+ K Sbjct: 224 -YDSH--ARDASLLDVIKASRVRDQIMGYSLHGIHKDELNMLLGDFPIK-REGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353 LV + LA + T P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLVALKLAQFDFLKRTGTAVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNRE 339 Query: 354 VFDSL 358 D + Sbjct: 340 HLDRI 344 >gi|255348438|ref|ZP_05380445.1| recombination protein F [Chlamydia trachomatis 70] gi|255502980|ref|ZP_05381370.1| recombination protein F [Chlamydia trachomatis 70s] gi|255506650|ref|ZP_05382289.1| recombination protein F [Chlamydia trachomatis D(s)2923] gi|296438380|gb|ADH20533.1| recombination protein F [Chlamydia trachomatis E/11023] Length = 365 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 130/320 (40%), Gaps = 8/320 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY LRL + G N GKTN+LEA+ LS GR FR + D Sbjct: 1 MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF +E + ++ L + D+ + + + I + EL + Sbjct: 61 IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 I G ERRRFLD ++ ++ + + + + + RN + + S Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTQHISLYHKALDQRNASIKAQ--NQKAIS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + G + R E L+++ + L L + + + Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y ++L D T++GPHR +L++ D + S G++ +L + A Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVA-KFSSEGQKHSLLAVLRFAEC 292 Query: 305 RLISNTTGFAPILLLDEISA 324 + PIL +D+I A Sbjct: 293 VYLQEEFCIHPILCMDDIHA 312 >gi|225621318|ref|YP_002722576.1| putative recombinational DNA repair ATPase [Brachyspira hyodysenteriae WA1] gi|225216138|gb|ACN84872.1| putative recombinational DNA repair ATPase (RecF pathway) [Brachyspira hyodysenteriae WA1] Length = 355 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 90/374 (24%), Positives = 164/374 (43%), Gaps = 35/374 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRNY F + + G NG GKTNILEAI L G FR ++ + Sbjct: 3 LKELTLRSFRNYNENIFEFSDKINVLYGHNGCGKTNILEAIYMLGNGVSFRTRLDRELVK 62 Query: 67 IGSPSFF-STFARVEGMEGLADISIKLETR------DDRSVRCLQINDVVIRVVDELNKH 119 G+ ++F R + + +I I + + D + V + D++ R+ Sbjct: 63 NGNDNYFLRGVFREDELNYDTNIEIAYQKKIKKVFIDKKEVSSRK--DLIGRI------- 113 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TE 175 L + +L D + + + RR + + ++ I + +I + +L++ RN L E Sbjct: 114 LYVIFLPNDTDLVIAEPKL-RRDYFNMLISTISSEYLIALIKYNKLLKMRNICLNTKPNE 172 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 Y +S + + +A K + E +N + I EN IK T ++ Sbjct: 173 AYIYNSDIAKLSLYIANENKKYSALLEEKMNEIYKNIF---NDENPYAIKYQST--IEDI 227 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 +++ EY KKL + T G HR++ Y + +++ S GE+++ Sbjct: 228 LNEN------EYIKKLETTLQEQIRMHTTYFGIHRAEYQFFYKN-SLSKKFSSQGEKRMF 280 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + + LA +++S +PILL+D+ LD +R+ + + +G Q+F+T T+K Sbjct: 281 TLIMKLASEKILSEYRKKSPILLIDDAMLELDNTRRDNILEYIKTLG-QVFITVTEKEKV 339 Query: 356 DSLNETAKFMRISN 369 + E K I N Sbjct: 340 KNF-ENGKVFDIPN 352 >gi|21326651|gb|AAL30091.1| RecF protein [Xanthomonas campestris pv. campestris] Length = 391 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 89/385 (23%), Positives = 156/385 (40%), Gaps = 56/385 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ + + GDNG GKT++LEA+ ++ GR F Sbjct: 24 MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSF-------- 75 Query: 65 TRIGSPSFFSTFARV-EGM--EGLADISIKLETRD------DRSVRC------------L 103 RV +G+ +G D+ I +E R+ +R+ R L Sbjct: 76 -----------LGRVRDGLIRQGGQDLEIFVEWRERAGDSTERTRRAGLRHSGQEWTGRL 124 Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 DV + L L + P + SG RRRFLD +F ++P + Sbjct: 125 DGEDVA--QLGSLCAALAVVTFEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYA 182 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R ++ RN LL +G + + ++AE G + R++ + L ++ V P Sbjct: 183 RALKQRNALLKQGA-QPQMLDAWDHELAESGETLTSRRLQYLERLQERLVP-VATAIAPS 240 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKA 281 + LS F G A L R+ D + T GPHR+D + D Sbjct: 241 LGLSALTFAPGWRRHEVS-----LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGK 295 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S G+ K+ + LA A ++ G PI+ LD++ + LD + + + + Sbjct: 296 DAL---SRGQAKLTALACLLAQAEDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASA 352 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMR 366 +Q+ +T T+ + L + K +R Sbjct: 353 PAQVLITATE--LPPGLADAGKTLR 375 >gi|33241177|ref|NP_876119.1| recombinational DNA repair ATPase (RecF pathway) [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238707|gb|AAQ00772.1| Recombinational DNA repair ATPase (RecF pathway) [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 355 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 82/338 (24%), Positives = 151/338 (44%), Gaps = 24/338 (7%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90 + +G NG GK+N+LEA+ L R R +S D+ G+ + A V + + + Sbjct: 9 LVIGPNGAGKSNLLEAVELLGSLRSHRSSSDQDLIHWGA-----SEAVVRAITS-DEEKL 62 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150 +LE R + + + R +D L LR + G + RR +LDR+V Sbjct: 63 QLEFRKLGGRKASRNGKSLARQLDLLGS-LRCVGFSALDLSLVRGEPLLRRNWLDRVVQQ 121 Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSS------WCSSIEAQMAELGVKINIARVEM 204 ++P + + F RL+R RN+L + + D S + ++QMA + +I+ R+ Sbjct: 122 LEPVYGDLITRFNRLLRQRNQLWRQ-WKDRSKDEHYALLDAFDSQMALVSTRIHRRRIRA 180 Query: 205 INALSSLIMEYVQ-----KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 + L + + + KE+ +K L+G+ ++ A + K+L + R + Sbjct: 181 LKHLGPIAATWQKRLSKGKEDL-ELKYHPGSILEGEEEE--LAWRLTIEKQLAEQRNEEE 237 Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 +GPHR +++ + GS G+Q+ +++ + LA + PILLL Sbjct: 238 RLGICKVGPHRDEVLF-LLNGVPARKFGSAGQQRTLVLALKLAELEFVGEMYKDPPILLL 296 Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 D++ A LD ++ L V D Q ++ T F+ Sbjct: 297 DDVFAELDPIRQLLLLEAVGD-NHQCLISATHLDAFEG 333 >gi|183980038|ref|YP_001848329.1| DNA replication and repair protein RecF [Mycobacterium marinum M] gi|226737814|sp|B2HI48|RECF_MYCMM RecName: Full=DNA replication and repair protein recF gi|183173364|gb|ACC38474.1| DNA replication and repair protein RecF [Mycobacterium marinum M] Length = 385 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 32/364 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A L T+FVG NG GKTNI+EA+ + + R + A + R Sbjct: 3 VRHLGLRDFRSWAHADLELGPGRTVFVGPNGFGKTNIIEALWYSATLGSHRVGTDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST +G E ++ LE R+ + ++N +R E+ LR Sbjct: 63 AGADRAVISTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G +RRR+LD + P D+++++R R LL Sbjct: 118 APEDLALVRGDPADRRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKSVSGARFRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLT 229 G D+ ++++A+ G ++ AR++++ L+ + + Q + + S+ Sbjct: 178 GALDT--LDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAYRASMD 235 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT-LIGPHRSDLIVDYCDKAIT--IAH 286 F+ EE R+ + R L+GPHR DL + D+ +H Sbjct: 236 AFVAADDAAPDRVTLEEGLLAALAARRDAELERGVCLVGPHRDDLELRLGDQPAKGFASH 295 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 G + + A + G P+LLLD++ A LD +R AL R V + Q+ Sbjct: 296 GESWS----MAVALRLAAFALLRADGSEPVLLLDDVFAELDAARRTALAR-VAESAEQVL 350 Query: 347 MTGT 350 +T Sbjct: 351 VTAA 354 >gi|254507276|ref|ZP_05119412.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus 16] gi|219549736|gb|EED26725.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus 16] Length = 360 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 83/365 (22%), Positives = 155/365 (42%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNDC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 NELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF + F+RL + RN LL Y + S+ Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + +MA L I+ R + + S E Q P + L + +D+ + Sbjct: 179 -DQEMARLAENISQWRSVYVEQMKSKAEEICQT-FLPEFDIQLKYYRG--WDK-----ET 229 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 Y + L + D T GP+++DL + + S G+ K+++ + +A + Sbjct: 230 PYQQILEKNFERDQALGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG + L+D+ ++ LD +R L + + G+Q+F++ T + D +E K Sbjct: 289 HLTEMTGKQCVYLIDDFASELDSQRRERLADCLKETGAQVFVSSITQSQIADMADENGKM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|29349663|ref|NP_813166.1| DNA repair protein RecF [Bacteroides thetaiotaomicron VPI-5482] gi|253569966|ref|ZP_04847375.1| DNA replication and repair protein recF [Bacteroides sp. 1_1_6] gi|298383927|ref|ZP_06993488.1| RecF protein [Bacteroides sp. 1_1_14] gi|51316448|sp|Q89ZW6|RECF_BACTN RecName: Full=DNA replication and repair protein recF gi|29341573|gb|AAO79360.1| DNA replication and repair protein RecF, ABC family ATPase [Bacteroides thetaiotaomicron VPI-5482] gi|251840347|gb|EES68429.1| DNA replication and repair protein recF [Bacteroides sp. 1_1_6] gi|298263531|gb|EFI06394.1| RecF protein [Bacteroides sp. 1_1_14] Length = 369 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 157/364 (43%), Gaps = 34/364 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + + F A+ F G NG+GKTN+L+A+ FLS F ++S + Sbjct: 3 LKRISILNYKNLEQVEIGFSAKLNCFFGQNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58 Query: 67 IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 FF E +G + I ++ R + + + R D + L + Sbjct: 59 QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFPVEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E MA+ G + R I E F I S F+ +Q Sbjct: 176 LFLVWEEMMAQAGEIVFRKREAFI-------------EEFIPIFQSFYSFISQDKEQVGL 222 Query: 242 ALKEEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + + +A+ L R+ D + +L G H+ +L + D I GS G+ K Sbjct: 223 SY-DSHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGDFPIK-KEGSQGQNKTY 280 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV 354 LV + LA + T P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 281 LVALKLAQFDFLKRTGQTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREH 340 Query: 355 FDSL 358 D + Sbjct: 341 LDRI 344 >gi|76788787|ref|YP_327873.1| recombination protein F [Chlamydia trachomatis A/HAR-13] gi|237804423|ref|YP_002888577.1| recombination protein F [Chlamydia trachomatis B/TZ1A828/OT] gi|97180699|sp|Q3KMU7|RECF_CHLTA RecName: Full=DNA replication and repair protein recF gi|76167317|gb|AAX50325.1| RecF [Chlamydia trachomatis A/HAR-13] gi|231272723|emb|CAX09627.1| DNA replication and repair protein [Chlamydia trachomatis B/TZ1A828/OT] Length = 365 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 129/320 (40%), Gaps = 8/320 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY LRL + G N GKTN+LEA+ LS GR FR + D Sbjct: 1 MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF +E + ++ L + D+ + + + I + EL + Sbjct: 61 IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 I G ERRRFLD ++ ++ + + + + RN + + S Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQ--NQKAIS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + G + R E L+++ + L L + + + Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y ++L D T++GPHR +L++ D + S G++ +L + A Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVA-KFSSEGQKHSLLAVLRFAEC 292 Query: 305 RLISNTTGFAPILLLDEISA 324 + PIL +D+I A Sbjct: 293 VYLQEEFCIHPILCMDDIHA 312 >gi|300934347|ref|ZP_07149603.1| recombination protein F [Corynebacterium resistens DSM 45100] Length = 452 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 95/380 (25%), Positives = 158/380 (41%), Gaps = 69/380 (18%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP-SFFSTFARVEGMEGLADI 88 +IF G NG GKTNI+EA+ +L+ R S + + R G + S A +G E + Sbjct: 2 SIFSGPNGHGKTNIVEALGYLAHLGSHRVTSDSALVREGQKLASISATAVNDGRE----L 57 Query: 89 SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148 S L R + R IN +R ++ +R + P + G +RR FLD ++ Sbjct: 58 STHLAIRASGANRAY-INRTAMRSPRDILGIVRTTLFSPEDLALIRGEPEQRRNFLDTIM 116 Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----------------------------D 179 A PR D+++ +R RN LL F Sbjct: 117 LARYPRLAGVKADYDKALRQRNALLRNSSFVLRHLTESPSQASSNRSTDDSSEIKGAHSR 176 Query: 180 SSWCSSIEA----------QMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKL 226 SS+ S E+ Q+A LG +I ARV++++ LS + + Q+ E+ P + Sbjct: 177 SSFLSDAESALATLDVWDGQLAALGGQIMSARVQIVHDLSPHVAKTYQRLAPESRP-AHM 235 Query: 227 SLTGFLDGKF------------DQSFCALKEEYAK----KLFDGRKMDSMSR-RTLIGPH 269 + T +D + + L E A+ + F ++ + R TL+GPH Sbjct: 236 AYTSTIDAQLADFGVQLGKSVPGEPTALLSPEVAEATLLRAFAEKRPHEIDRGTTLLGPH 295 Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 R D+ + S GE + + L A + + G PI++LD++ A LD + Sbjct: 296 RDDVTFTLGTQPAK-GFASHGESWSFALSLRLG-AYFMGRSDGTEPIVILDDVFAELDRN 353 Query: 330 KRNALFRIVTDIGSQIFMTG 349 +R L ++ D Q+ +T Sbjct: 354 RRRKLVDLLED-AEQVLITA 372 >gi|167855650|ref|ZP_02478408.1| recombination protein F [Haemophilus parasuis 29755] gi|167853222|gb|EDS24478.1| recombination protein F [Haemophilus parasuis 29755] Length = 361 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 79/345 (22%), Positives = 154/345 (44%), Gaps = 28/345 (8%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I+ FRN ++ L + F+G NG GKT++LEAI +L G+ F+ + + Sbjct: 8 INNFRNLTAVDLELNHGFNFFIGANGSGKTSLLEAIFYLGHGKSFKSHISNRIIKYNQEE 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F+ F +++ E + S+ L+ ++ + L+IN + + +L L + + P Sbjct: 68 -FTLFGKIQ--EEKHECSVGLQ-KNRQGETILRINGESNKKIADLAYLLPMQVITPEGLT 123 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFD-SSWCSSIEA 188 + +G + RR FLD +F + +RL++ RN L T Y + W + Sbjct: 124 LLNGGPIYRRAFLDWGLFHQNTDFYHNWNSLKRLLKQRNAALVQTRHYNELKPW----DV 179 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFCALKE 245 ++++ ++ +R + I+ Y++K P ++++ T F G + Sbjct: 180 ELSKFAQIVSQSRA----VYAESILTYIEKNCQFFLPELEITAT-FYQG------WEKER 228 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHA 304 +YA L G + D T++GP ++D + + + S G+ K+++ + LA Sbjct: 229 DYADLLAQGFERDRSVGYTMVGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 I L+D+ ++ LD K L + GSQ+F+T Sbjct: 287 EYFIAQKNRQCIFLIDDFASELDTQKCELLADRLYQSGSQVFVTA 331 >gi|309799251|ref|ZP_07693499.1| DNA replication and repair protein RecF [Streptococcus infantis SK1302] gi|308117096|gb|EFO54524.1| DNA replication and repair protein RecF [Streptococcus infantis SK1302] Length = 214 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 6/209 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+I +FRNY + F+ + +FVG N GKTN+LE+I FL+ R R + ++ + Sbjct: 3 LKKLSIKQFRNYQDTEIEFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNLIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F +V G+ ++ LE R ++N + + + H+ + Sbjct: 63 -----FEEQQLQVSGILQKRTTTVPLEIDLTPKGRITKVNHLKQARLSDYIGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P ++ G RR+F+D + I P + + + +++ RN L + D ++ S Sbjct: 118 PEDLQLVKGAPAIRRKFIDMELGQIKPIYLSDLSSYNHVLKQRNTYLKSANQIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIME 214 ++ Q+ + G ++ + R E I S L+++ Sbjct: 178 LDDQLVDYGCRVMVHREEFIKKWSLLVVK 206 >gi|291288760|ref|YP_003505576.1| Recombinational DNA repair ATPase (RecF pathway)- like protein [Denitrovibrio acetiphilus DSM 12809] gi|290885920|gb|ADD69620.1| Recombinational DNA repair ATPase (RecF pathway)- like protein [Denitrovibrio acetiphilus DSM 12809] Length = 340 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 159/359 (44%), Gaps = 36/359 (10%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRAS 60 TNR++I LN FRN+ + ++D ++ ++ GDNG GKT++LE++ L + FR+ + Sbjct: 3 TNRVRI--LN---FRNH--IDSLYDFENINYIEGDNGTGKTSVLESLFVLFNLKSFRQQT 55 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R F + ++G D R + S V + L+ H Sbjct: 56 VKKAIRFKQDFFLVSAKCLDG-----DFQRTFHYRYETSAELKDDEGKVSGKAEYLSMHP 110 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 I + P ++ S +RRRF+DR+ F ID H R+ D +L + L + + Sbjct: 111 VICY-SPEYGQVVSDDQDDRRRFIDRLSFQIDRGHFDRLTDLRKLNLMKVSELKKDRLNR 169 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFD-Q 238 ++ S+ ++ EL KI+ R + I +++ ++ + + GF DG + D + Sbjct: 170 AYIDSVNEKIVELSEKISGTR----ECTAGQINDHM-RQTYAEL-----GFDDGFRLDFR 219 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S K K++ D RR L G R D D + S G++K ++ Sbjct: 220 SNVKDKNLLLKEIVD--------RRLLYGSSR-DRFYSVSDGRVYDRFSSFGQKKTFVLI 270 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + +L+ I LLD+ A LD+ + LF + D +QIF+TG + F S Sbjct: 271 TLASGLKLLEKNGKNGIITLLDDFEAGLDKSRIERLFHLF-DTSAQIFITGVKNTNFSS 328 >gi|160887072|ref|ZP_02068075.1| hypothetical protein BACOVA_05088 [Bacteroides ovatus ATCC 8483] gi|260171615|ref|ZP_05758027.1| DNA repair protein RecF [Bacteroides sp. D2] gi|315919929|ref|ZP_07916169.1| DNA replication and repair protein recF [Bacteroides sp. D2] gi|156107483|gb|EDO09228.1| hypothetical protein BACOVA_05088 [Bacteroides ovatus ATCC 8483] gi|313693804|gb|EFS30639.1| DNA replication and repair protein recF [Bacteroides sp. D2] Length = 372 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 93/365 (25%), Positives = 160/365 (43%), Gaps = 36/365 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS F ++S + Sbjct: 3 LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58 Query: 67 IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 FF E +G + I ++ R + + + R D + L + Sbjct: 59 QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 + P+ + +G S ERRRF+D ++ D + +I + +++ RN LL +E + Sbjct: 116 VMVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKVLAQRNTLLKSEFPVEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E MA+ G + R + I E++ I S F+ D+ Sbjct: 176 LFLVWEEMMAQAGAIVFQKR-------EAFIREFIP------IFQSFYSFISQ--DKEVV 220 Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 L E +A+ L R+ D + +L G H+ +L + + I GS G+ K Sbjct: 221 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353 LV + LA + T P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRG 339 Query: 354 VFDSL 358 D + Sbjct: 340 HLDRI 344 >gi|317131012|ref|YP_004090326.1| DNA replication and repair protein RecF [Ethanoligenens harbinense YUAN-3] gi|315468991|gb|ADU25595.1| DNA replication and repair protein RecF [Ethanoligenens harbinense YUAN-3] Length = 375 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 90/378 (23%), Positives = 158/378 (41%), Gaps = 32/378 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ FRN L D IF G N GKTN+LEAI + R FR A +++ + Sbjct: 6 LSLQGFRNLEQTVLEPDPSVNIFYGQNAQGKTNLLEAIWLFTGARSFRGAKDSELVGFQA 65 Query: 70 PSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F+ R++ L R+ R R ++NDV ++ L+ Sbjct: 66 EKADLSLSFTAGGRLQ--------EAVLSIREGR--RYARLNDVPLQSPAGLSGEFCAVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + RR FLD + + PRH + + + + RN LL + Sbjct: 116 FSPEHLSLVKDGPSVRRAFLDEAICPLRPRHAAILAAYHKALIQRNALLKDIPHHMDLLD 175 Query: 185 SIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS--------LTGFLD 233 +++ ++ +LG I AR+ + L Q + H + + L LD Sbjct: 176 TLDVWDERVGKLGAAILHARLRYLARLLPKAERLHQSISNSHEQAAFRYESAKGLQNVLD 235 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + +++ + + R+ D + T +GPHR DL + ++ + S G+Q+ Sbjct: 236 DPGRHA-SEIEQALRAAMRERRRADLETGVTGVGPHRDDLTISVAERPAR-SFASQGQQR 293 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA A ++++ G P+LLLD++ + LD +R+ L + G+Q+F+T D Sbjct: 294 TAALALKLAEAEVLTDVMGEPPVLLLDDVFSELDGSRRDYLMHHID--GAQVFITCCDPQ 351 Query: 354 VFDSLNETAKFMRISNHQ 371 S +SN Q Sbjct: 352 ELAS--SAGAVFSLSNGQ 367 >gi|254412109|ref|ZP_05025884.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus chthonoplastes PCC 7420] gi|196181075|gb|EDX76064.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus chthonoplastes PCC 7420] Length = 382 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 173/367 (47%), Gaps = 23/367 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + +FRNY + F+A TI VG+N GK+N+LEA+ LS + R ++ Sbjct: 3 LKCLKLRQFRNYRDCLVNFEAPKTILVGNNAQGKSNLLEAVELLSTLKSHRSGRDREMV- 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + S A +E G ++ + L ++ R+V + + R +D L + + Sbjct: 62 LEDASMGQIQALLERAYGSVELGLTLRSQGRRTVAL--NRESLRRQLDFLGILNAVQFSS 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----------TE 175 +D + G RR +LD ++ ++P + + + +++R RN LL E Sbjct: 120 LDLD-LVRGSPERRRNWLDSILTQLEPIYAYILQQYNQVLRQRNALLKTIRKQEEERTPE 178 Query: 176 GYFDSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 G + + +AQ+A G ++ R ++ L+ L + + L +T Sbjct: 179 GVISKQPQTELALWDAQLATAGSRVTRRRARVLQRLAPLAQSWHSSISGKTELLEVTYAP 238 Query: 233 DGKFDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTG 290 + ++ A+++ + KL R + TL+GPHR D V++ ++ ++GS G Sbjct: 239 NVNLEKDDPEAVQQAFLDKLHHRRFPEQRQGITLVGPHRDD--VEFTINQTPARSYGSQG 296 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ +++ + LA +LI G P+LLLD++ A LD +++N L + D Q +T T Sbjct: 297 QQRTLVLALKLAELKLIEEVVGEPPLLLLDDVLAELDPNRQNQLLDAIQD-RFQTLITTT 355 Query: 351 DKSVFDS 357 FD+ Sbjct: 356 HLGAFDA 362 >gi|260771049|ref|ZP_05879977.1| DNA recombination and repair protein RecF [Vibrio furnissii CIP 102972] gi|260613938|gb|EEX39129.1| DNA recombination and repair protein RecF [Vibrio furnissii CIP 102972] gi|315178624|gb|ADT85538.1| DNA replication and repair protein RecF [Vibrio furnissii NCTC 11218] Length = 359 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 82/365 (22%), Positives = 159/365 (43%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN + + + +G NG GKT++LEAI L GR F+ V + Sbjct: 6 LIVQQFRNIKACDIPLSSGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSTLTGRVIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D S ++I + + +L + L + + P Sbjct: 66 SELFVHGRFLTSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + +RR F+D VF + F+RL + RN LL Y + S+ Sbjct: 121 EGFELLTDGPKQRRAFIDWGVFHTEVAFFDAWGRFKRLNKQRNALLKTASSYRELSYWDQ 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 A++AE + A VE + + E + + P +++L + + + + Sbjct: 181 ELARLAENIDQWRGAYVEQMKR----VAEELCRTFLPEFEITLKYYRGWEKETPY----H 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E +K F+ D + T GP+++DL + + S G+ K+++ + +A + Sbjct: 233 EILQKNFE---RDQLLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D + +K Sbjct: 289 HLTELTGKQCIYLIDDFASELDSQRRKRLADCLKATGAQVFVSSITESQVADMVEPNSKM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|289525119|emb|CBJ14590.1| DNA replication and repair protein [Chlamydia trachomatis Sweden2] gi|296434663|gb|ADH16841.1| recombination protein F [Chlamydia trachomatis E/150] Length = 365 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 129/320 (40%), Gaps = 8/320 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY LRL G N GKTN+LEA+ LS GR FR + D Sbjct: 1 MRVLSLFLKDFRNYTDLRLELGPDMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF +E + ++ L + D+ + + + I + EL + Sbjct: 61 IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 I G ERRRFLD ++ ++ + + + + + RN + + S Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTQHISLYHKALDQRNASIKAQ--NQKAIS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + G + R E L+++ + L L + + + Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y ++L D T++GPHR +L++ D + S G++ +L + A Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVA-KFSSEGQKHSLLAVLRFAEC 292 Query: 305 RLISNTTGFAPILLLDEISA 324 + PIL +D+I A Sbjct: 293 VYLQEEFCIHPILCMDDIHA 312 >gi|300112750|ref|YP_003759325.1| DNA replication and repair protein RecF [Nitrosococcus watsonii C-113] gi|299538687|gb|ADJ27004.1| DNA replication and repair protein RecF [Nitrosococcus watsonii C-113] Length = 362 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 84/352 (23%), Positives = 147/352 (41%), Gaps = 31/352 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L++ FRN L + G N GKT+ LEAI L GR FR + Sbjct: 3 ITHLDVRNFRNLKHTELHPAKGVNVLSGANSSGKTSFLEAIYLLGLGRSFRTVQLISTVQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G S A+V+ G ++ R+ + N ++ +L L + ++ Sbjct: 63 TGMESL-RVVAKVKQAGGSYITGVEFGPNGFRA----RTNGSTVKKRSQLATQLPLLYM- 116 Query: 127 PSMDRI-FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 PS I G RR++LD +F ++P ++R ++ RN L SW Sbjct: 117 PSYSHIMLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHALR--VHKPSWRQE 174 Query: 186 IEA---QMAELGVKINIARVEMI----NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 I +++ G +I R ++ +++S L M V + P ++++ +F Q Sbjct: 175 INVWNKKLSTYGEQITSLREAILFKLRDSVSQLFMALVHQ---PLARVTM------EFKQ 225 Query: 239 SFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + A EE + + D ++ T GPHR++ + Y D S G+QK+ Sbjct: 226 GWTRTAGLEEILNETLN---YDRVTGYTRYGPHRAE-VAFYVDGKDVREILSRGQQKIFC 281 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + L+ A L+ + L+D+ ++ LD D R ++ +G Q+F T Sbjct: 282 YSLALSQADLLCRIKEQNCVFLMDDFASELDIDHRKRFLALLNKLGIQVFAT 333 >gi|299148571|ref|ZP_07041633.1| RecF protein [Bacteroides sp. 3_1_23] gi|298513332|gb|EFI37219.1| RecF protein [Bacteroides sp. 3_1_23] Length = 372 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 93/365 (25%), Positives = 159/365 (43%), Gaps = 36/365 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS F ++S + Sbjct: 3 LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58 Query: 67 IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 FF E +G + I ++ R + + + R D + L + Sbjct: 59 QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 116 VMVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFSVEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E MA+ G + R + I E++ I S F+ D+ Sbjct: 176 LFLVWEEMMAQAGAIVFQKR-------EAFIREFIP------IFQSFYSFISQ--DKEVV 220 Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 L E +A+ L R+ D + +L G H+ +L + + I GS G+ K Sbjct: 221 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353 LV + LA + T P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLVALKLAQFDFLKRTGWTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRG 339 Query: 354 VFDSL 358 D + Sbjct: 340 HLDRI 344 >gi|269217832|ref|ZP_06161686.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon 848 str. F0332] gi|269212767|gb|EEZ79107.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon 848 str. F0332] Length = 453 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 13/217 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +++FR+Y + T+ VG+NG GKTN++EA+ +LS R + A + R G+ Sbjct: 6 LALTDFRSYERAIVALKPGVTVLVGENGQGKTNLIEAVGYLSTLSSHRVSGDAALVRQGA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + ARV + A ++++E R+ R +IN ++R E+ +R P Sbjct: 66 TAAV-VQARV--VRSSAPTTVEVEIYSGRANRA-RINRGLVR-PPEIVGTVRSVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------GYFDSS 181 + SG RR FLDR++ + PR +++R R R LL G D++ Sbjct: 121 LELVSGDPAARRSFLDRIMVQLRPRMVAVKSEYDRAARQRAALLKSAGAARRGGGSADAA 180 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + Q+A+LG +I AR E++ L + E+ K Sbjct: 181 ALDVWDVQLAKLGARITAARAEIVARLRPRVDEFYAK 217 >gi|237784640|ref|YP_002905345.1| DNA replication and repair protein RecF [Corynebacterium kroppenstedtii DSM 44385] gi|237757552|gb|ACR16802.1| DNA replication and repair protein RecF [Corynebacterium kroppenstedtii DSM 44385] Length = 429 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 151/373 (40%), Gaps = 39/373 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + FR++ L L T+F G NG GKTN++EA+ +++ R ++ A + R Sbjct: 3 IRALQLRNFRSWPELDLHLGPGITVFSGPNGHGKTNVVEALDYVAHLGSHRVSTDAPLVR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G + S A G E A + IK R QIN + +L ++ Sbjct: 63 EGREYTTVSATAINSGRELTAHMLIKA-----RGSNKAQINRAPCKSPRQLLGIVKTVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN-------RLLTEGYF 178 P + G RRRFLD ++ PR D+++++R RN R L +GY Sbjct: 118 SPEDLALVRGEPEHRRRFLDDLLIGRFPRWAGTRSDYDKILRQRNTLLKRASRTLRQGYG 177 Query: 179 DSSWCSSI-------EAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFP-HIKLS 227 + S ++ +A G ++ R+ + + LS + Q+ E+ P I Sbjct: 178 GGNDSDSALDTLDTWDSHLAAAGAQVMAQRIVLAHVLSPYVKNAYQRLAPESRPAQITYR 237 Query: 228 LT---GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIV 275 T ++ A A + + + ++RR + GPHR D+ + Sbjct: 238 STVDKALVEAGITPETVANDVAGATPVIEAVLLSELARRRDTDIQRGTSTCGPHRDDVEL 297 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 + S GE + + LA G PIL+LD++ A LD +R AL Sbjct: 298 -LLGTQPARGYASHGESWSFALALRLASFEW-QREQGTDPILILDDVFAELDAARRRALA 355 Query: 336 RIVTDIGSQIFMT 348 + D Q +T Sbjct: 356 TVAKD-AEQTLVT 367 >gi|313671973|ref|YP_004050084.1| smc domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312938729|gb|ADR17921.1| SMC domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 335 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 82/347 (23%), Positives = 156/347 (44%), Gaps = 26/347 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + + FRN+ + FD ++ I G NG GKT+ILE+IS + G+ F+ + Sbjct: 3 LKDIKLRNFRNHINSIFSFDIKNYI-TGKNGSGKTSILESISLIFTGKSFKTNKLKSIIN 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 I +FF + DI++ +T+ + L IN + + + + Sbjct: 62 I-DKNFFEISSNFSDDNVNYDITLYYDTK-----KRLTINGKRPENIINFYHNHPVIFYS 115 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + S RR FLDR +F +D + ++ + +L+ + + + + DS SI Sbjct: 116 PENEGFLSKEQEIRRNFLDRSIFYLDISYIDSLLGYNKLLELKKKYILKDVKDSLLYKSI 175 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 +M+ I R +I + ++ I +Y++ + P + T F S + Sbjct: 176 HEKMSNYIKDIQNKRSNLIKSFNTYIEKYLR--DIPSLN---TEFF------SLSYIPNH 224 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAHAR 305 + L D + + ++ L GPHR + + ++ IA S G++K + + + Sbjct: 225 LDEDLLDK---ELILKKVLSGPHRDKITFNLNGESFENIA--SFGQRKSLSLCCIYCFLK 279 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 ++ + + + ILLLDE+ + LD + R + F + D Q F+TG K Sbjct: 280 VVEDFSKKSIILLLDELESGLDVE-RVSFFMELFD-KYQYFLTGQSK 324 >gi|237721344|ref|ZP_04551825.1| DNA replication and repair protein RecF [Bacteroides sp. 2_2_4] gi|229449140|gb|EEO54931.1| DNA replication and repair protein RecF [Bacteroides sp. 2_2_4] Length = 372 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 93/365 (25%), Positives = 159/365 (43%), Gaps = 36/365 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS F ++S + Sbjct: 3 LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58 Query: 67 IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 FF E +G + I ++ R + + + R D + L + Sbjct: 59 QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 116 VMVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNALLKSEFSVEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E MA+ G + R + I E++ I S F+ D+ Sbjct: 176 LFLVWEEMMAQAGAIVFQKR-------EAFIREFIP------IFQSFYSFISQ--DKEVV 220 Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 L E +A+ L R+ D + +L G H+ +L + + I GS G+ K Sbjct: 221 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353 LV + LA + T P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLVALKLAQFDFLKRTGWTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRG 339 Query: 354 VFDSL 358 D + Sbjct: 340 HLDRI 344 >gi|188574273|ref|YP_001911202.1| recombination protein F [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518725|gb|ACD56670.1| DNA replication and repair RecF protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 365 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 78/342 (22%), Positives = 142/342 (41%), Gaps = 8/342 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + + G+ Sbjct: 3 LSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 EG + + + R +++ + + L L + P Sbjct: 63 NDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + SG RRRFLD +F ++P + R ++ RN LL +G + + + Sbjct: 123 HVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQGA-QPRMLDAWDHE 181 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +AE G + R+ + L ++ V P + LS F G + + +L A Sbjct: 182 LAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPG-WKRHEVSL----AD 235 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L R D + T GPHR+D + + D S G+ K+ + LA A + Sbjct: 236 ALLLARDRDRQNGYTSQGPHRADWMPHF-DVLPGKDALSRGQAKLTALACLLAQAEDFAF 294 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 P++ LD++ + LD + + + +Q+ +T T+ Sbjct: 295 ERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITATE 336 >gi|16330164|ref|NP_440892.1| recombination protein F [Synechocystis sp. PCC 6803] gi|6093944|sp|P73532|RECF_SYNY3 RecName: Full=DNA replication and repair protein recF gi|1652652|dbj|BAA17572.1| RecF protein [Synechocystis sp. PCC 6803] Length = 384 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 178/378 (47%), Gaps = 19/378 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L + FRNY + F AQ TI VG+N GK+N+LEA+ L+ + R + ++ Sbjct: 3 LKKLYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLLEAVELLATLKSHRTSRDQELVL 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ + A +E +A++ I L R++R Q + R +D L + + Sbjct: 63 DGAAN-GQIKALLERQYSVAELEIDLRRSGRRNLRINQ--NQCRRQLDFLGCLNAVEFSC 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----------- 175 +D + G RR++LD ++ ++P + + ++ +++ RN LL Sbjct: 120 LDLD-LVRGAPDCRRQWLDTLLTQLEPLYAHLLGQYQHIVKQRNALLKSLRQQWETGLAL 178 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 G ++ S + Q+ E+G ++ R + L+ L E+ + + + L++T + Sbjct: 179 GEESTASLSLWDQQLVEMGTRVVRRRARGLARLAPLAQEWHGRISGGNETLTVTYQPNVT 238 Query: 236 F-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + + + +KL R + T++GPHR D + D +GS G+Q+ Sbjct: 239 WVGDDPEVVHQAFLEKLAQRRSAELHLGTTVVGPHR-DEVGFVLDDTPARTYGSQGQQRT 297 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 +++ + LA LI G P+LLLD++ A LD D++ L + D Q +T T S Sbjct: 298 LVLALKLAELSLIETVIGEPPLLLLDDVLAELDLDRQGQLLMAIED-RFQTLITTTHLSR 356 Query: 355 FDS-LNETAKFMRISNHQ 371 FD +A+ ++++ Q Sbjct: 357 FDDRWRRSAQILKVNAGQ 374 >gi|291515283|emb|CBK64493.1| recF protein [Alistipes shahii WAL 8301] Length = 415 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 96/356 (26%), Positives = 156/356 (43%), Gaps = 41/356 (11%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI LN F+N + L VGDNG GKTN+++A+ +LS + + Sbjct: 5 KIALLN---FKNISQEELALCPGINCLVGDNGAGKTNVVDAVYYLSMCKSSLPMTDGQSI 61 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETR----DDRSVRCLQINDVVIRVVDELNKHLR 121 R G+ F VEG A + K ET + + L+ N + + L+ H+ Sbjct: 62 RHGADFFL-----VEGT--YASDAGKRETIVCSFSRKGGKVLKRNG---KEYERLSDHVG 111 Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + V P+ + S + ERRR+L+ + +D + ++ + ++ RNRLL + Sbjct: 112 LIPAVIVSPADSALISDAADERRRYLNAFISQLDRAYLGSVMRYNAVLAERNRLL-KTRP 170 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D + + Q+ E G I+ R E L + Y L G +Q Sbjct: 171 DETMLQIYDMQLCEHGKAIHARRQEFAERLQPVTAAYYS-------------ILSGDREQ 217 Query: 239 SFCALKEE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 K E + + L D R+ D ++ T G HR DL++ + +GS G+QK Sbjct: 218 VELHYKSELNDRPFEEILLDARQKDIVNEFTTAGIHRDDLVLKIGGYPLR-KYGSQGQQK 276 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMT 348 L+ + LA +++ T G PILLLD++ LD + L R+V+D QI +T Sbjct: 277 SFLIALKLAQYAVVAQTKGERPILLLDDLFDKLDAGRVEQLIRLVSDNTFGQILIT 332 >gi|291455695|ref|ZP_06595085.1| RecF protein [Bifidobacterium breve DSM 20213] gi|291382623|gb|EFE90141.1| RecF protein [Bifidobacterium breve DSM 20213] Length = 385 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 82/358 (22%), Positives = 153/358 (42%), Gaps = 48/358 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I VG NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILVGKNGLGKTNLVEAVEVLSTGASHRASSMLPL 60 Query: 65 TRIG--SPSFFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIRVVDELNKH 119 G + + + +G + SI + S L + D++ R+ Sbjct: 61 IERGQTTATIRANVVDDDGQSTTYEASIHARGANRARINSGTSLYLRDIIGRIPS----- 115 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 +S+ P R+ SG RR L++ ++P + + + F R+ + R LL + Sbjct: 116 --VSF-TPEDQRLVSGDPGARRTLLNQAGALLEPGYMQSLHQFTRIGKQRATLLKQLGAS 172 Query: 180 SSWCSSIEA----------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 ++ ++A Q E GV++ R +I+ L+ E F + LT Sbjct: 173 ANTGQPVDAVLSGLEIWTGQFIEAGVELTRMRARVIDLLA---------EPFAALYAELT 223 Query: 230 GFLD-------GKFDQSFCALKE-----EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 G D FD+ E+ ++++ G ++ LIGP R DL ++ Sbjct: 224 GNDDTVSLTYAPSFDEVLMQDDPRLSISEHFQRIYPGEVARGVN---LIGPQRDDLTLNL 280 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 D S GE + + + +A ++I G PI++LD++ A LD+++R + Sbjct: 281 ADMPAR-EFASNGEMWTMALALKMALFQVIRQRLGLKPIVILDDVFAQLDDNRRTQIL 337 >gi|317499298|ref|ZP_07957571.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium 5_1_63FAA] gi|316893467|gb|EFV15676.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium 5_1_63FAA] Length = 267 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 24/259 (9%) Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 + I+ + IR +L + + P +I ERR+FLD + ++ + ++ ++ Sbjct: 1 MAIDRIPIRRSSDLLGQIPVILFSPEDLKIVKSGPSERRKFLDIELSQMERLYLYQLTNY 60 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKE 219 +++ RN LL + F ++ ++EA Q+ + G ++ R + I L E QK Sbjct: 61 NKILVQRNNLLKQIRFQNNLIETLEAWDIQLVKYGSEVIKYREKFIKHLG----EVCQK- 115 Query: 220 NFPHIKLSLTG-----FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274 I LTG L+ D + + E AKK R+ D T +GPHR D Sbjct: 116 ----IHNKLTGGKEKILLEYDRDVGYDSYLTELAKK----RQKDLKYSTTTVGPHRDD-- 165 Query: 275 VDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 + + I I +GS G+Q+ + + LA +L+ +PILLLD++ + LD +++ Sbjct: 166 ISFIVNGIDIRKYGSQGQQRTAALSLKLAQIQLMREVMKESPILLLDDVLSELDSNRKTY 225 Query: 334 LFRIVTDIGSQIFMTGTDK 352 L + D + I TG D+ Sbjct: 226 LLESIKDTQTIITCTGLDE 244 >gi|58579626|ref|YP_198642.1| recombination protein F [Xanthomonas oryzae pv. oryzae KACC10331] gi|75508390|sp|Q5H713|RECF_XANOR RecName: Full=DNA replication and repair protein recF gi|58424220|gb|AAW73257.1| DNA replication and repair RecF protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 368 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 78/342 (22%), Positives = 142/342 (41%), Gaps = 8/342 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + + G+ Sbjct: 6 LSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 EG + + + R +++ + + L L + P Sbjct: 66 NDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + SG RRRFLD +F ++P + R ++ RN LL +G + + + Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQGA-QPRMLDAWDHE 184 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +AE G + R+ + L ++ V P + LS F G + + +L A Sbjct: 185 LAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPG-WKRHEVSL----AD 238 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L R D + T GPHR+D + + D S G+ K+ + LA A + Sbjct: 239 ALLLARDRDRQNGYTSQGPHRADWMPHF-DVLPGKDALSRGQAKLTALACLLAQAEDFAF 297 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 P++ LD++ + LD + + + +Q+ +T T+ Sbjct: 298 ERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITATE 339 >gi|117927214|ref|YP_871765.1| recombination protein F [Acidothermus cellulolyticus 11B] gi|166220694|sp|A0LQR9|RECF_ACIC1 RecName: Full=DNA replication and repair protein recF gi|117647677|gb|ABK51779.1| DNA replication and repair protein RecF [Acidothermus cellulolyticus 11B] Length = 371 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 148/364 (40%), Gaps = 37/364 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L +++FR+Y L D +FVG NG GKTN++EA+ +L+ R R A+ A + R GS Sbjct: 6 LELTDFRSYRRAALELDPGVNVFVGSNGQGKTNLVEAVCYLALLRSHRTATDAPLVRQGS 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 E + I + +E R+ R L++N R +L LR+ P Sbjct: 66 E---RAVLHGEVLTSGRRIDLDVEIVPGRANR-LRVNGHATRRARDLVGILRVVIFAPED 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-------- 181 + G RR +LD ++ + PR ++E+ +R RN L D Sbjct: 122 LALVKGDPAARRDYLDDVLVELRPRLFAVRAEYEKALRQRNAFLRAVAQDGQQVDRNSLD 181 Query: 182 -W-----------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 W + + EL + A + ++ +EY + P L Sbjct: 182 VWNLHFARAAAALLDARRRLVHELAPFVEKAYAAISGGSGAVRLEY--RSTVPEEVLQ-D 238 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + + AL++ +L G TL+GPHR DL ++ D + S Sbjct: 239 ADEETRIAGILAALRKVQDAELARG--------LTLVGPHRDDLNLE-LDSRPARGYASH 289 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + L L+ + G P+++LD++ A LD+ +R L V+ + + Sbjct: 290 GESWSYALALRLGAYELL-RSDGETPVMILDDVYAELDQQRRRRLTGCVSGAEQLLITSA 348 Query: 350 TDKS 353 D+ Sbjct: 349 VDEP 352 >gi|293191014|ref|ZP_06609058.1| RecF protein [Actinomyces odontolyticus F0309] gi|292820701|gb|EFF79667.1| RecF protein [Actinomyces odontolyticus F0309] Length = 398 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 97/400 (24%), Positives = 163/400 (40%), Gaps = 37/400 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FR++ + T+ VG NG GKTN++EA+++LS R + + Sbjct: 1 MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL 60 Query: 65 TRI------GSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 RI +P ARV G E + I+LE ++ R ++N ++ + L Sbjct: 61 VRIPIDEAEAAPGGAVIRARVVIFGREQV----IELEIVRGKANRA-RVNRAQVKPREIL 115 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 +R P + G RR FLD + + P H DF+R+ R R L+ Sbjct: 116 GV-VRTVVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAA 174 Query: 177 YF-----DSSWCSSIE---AQMAELGVKINIARVEMINALSSLIM-EYVQKENFP-HIKL 226 S S++E Q A L +I R +++ L Y + P H+ L Sbjct: 175 QASLRRGQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHL 234 Query: 227 SLTGFLD---GKFDQSFC--------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 + +D G + A E L R+ ++ L+G HR DL + Sbjct: 235 AFDASVDRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLVGAHRDDLTL 294 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 + + S GE V + + L L+S+ G PIL+LD++ A LD +R L Sbjct: 295 SLGAMPVK-GYASHGESWSVALALRLGAFELLSD-DGDTPILILDDVFAELDSSRREGLA 352 Query: 336 RIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 + + I + DSL+ A +R+ + I Sbjct: 353 ALASKAEQIIVTCAVAGDLPDSLDHHALHVRLDPERGTVI 392 >gi|33866581|ref|NP_898140.1| recombination protein F [Synechococcus sp. WH 8102] gi|51316337|sp|Q7U4L8|RECF_SYNPX RecName: Full=DNA replication and repair protein recF gi|33633359|emb|CAE08564.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. WH 8102] Length = 365 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 80/354 (22%), Positives = 157/354 (44%), Gaps = 24/354 (6%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN+ L L + +G NG+GK+N+LEA+ L R R + D+ + +P Sbjct: 4 FRNHRKLSLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWEAPRALL 63 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 +G + ++LE R + + + R +D + I + ++ + Sbjct: 64 RAGLDDGDQ------LELELRRQGGRQARRNGKTLDRQLDLIGPLRCIGFSALDLE-LVR 116 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-----SWCSSIEAQ 189 G RR++LDR+V ++P + + + RL+R R++L G + + + + Q Sbjct: 117 GEPALRRQWLDRVVLQLEPVYADLLGRYNRLLRQRSQLWRRGAQTNPNQRDALLDAFDVQ 176 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC------AL 243 MA + +I+ R + L + + + +L L + D A+ Sbjct: 177 MALVSTRIHRRRQRALRRLEPIARRWQSHLSAGSEELELHYQPGSRLDAEEAEEPWRLAI 236 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E+ + + ++ S +GPHR ++ + GS+G+Q+ +++G+ LA Sbjct: 237 EEQLRLQRPEEERLGSCR----VGPHRDEVSLQLGGTPAR-RFGSSGQQRSLVLGLKLAE 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 L++ G AP+LLLD++ A LD +++ L V Q ++ T S F+ Sbjct: 292 LELVTQLFGEAPLLLLDDVLAELDPTRQHLLLEAVGQ-EHQCLVSATHLSGFEG 344 >gi|238917986|ref|YP_002931500.1| recombination protein F [Edwardsiella ictaluri 93-146] gi|259563363|sp|C5BHC7|RECF_EDWI9 RecName: Full=DNA replication and repair protein recF gi|238867554|gb|ACR67265.1| DNA replication and repair protein RecF [Edwardsiella ictaluri 93-146] Length = 358 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 85/365 (23%), Positives = 148/365 (40%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN L VG NG GKT++LEAI L GR FR V R Sbjct: 6 LVIRDFRNIEEADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDC 65 Query: 70 PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 S F R++ G + + + + D VR I+ V EL + L + + P Sbjct: 66 -SAFVLHGRIDDGGGRERAVGLSKDRQGDSKVR---IDGSDGHKVAELAQMLPMQLITPE 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSS 185 + +G RR FLD F + + R+++ RN R +T W Sbjct: 122 GFTLLNGGPKYRRAFLDWGCFHGERSFFTAWNNLRRVLKQRNAALRQVTRYAQIRPW--- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ L +++ R A++ I + P LS + + + AL E Sbjct: 179 -DQELVPLAEQVSALRAAYSEAIAQDIAATC-SQFLPEYALSFSFMRGWDRESDYAALLE 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 + ++ D T GPH++D + D S G+ K+++ + LA Sbjct: 237 RHFER-------DRALTYTAQGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGE 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKF 364 ++ +G + L+D+ ++ LD +R L + G+Q+F++ + + D ++E K Sbjct: 289 YLTRHSGRQCLYLIDDFASELDAGRRRLLAERLKSTGAQVFVSAVNADQIGDMVDEKGKM 348 Query: 365 MRISN 369 + Sbjct: 349 FHVEQ 353 >gi|297625207|ref|YP_003686970.1| DNA replication and repair protein recF [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296920972|emb|CBL55509.1| DNA replication and repair protein recF [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 433 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 90/387 (23%), Positives = 164/387 (42%), Gaps = 53/387 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + +FR+Y + +L ++FVG NG GKTN++EA+ +LS R ++ A + R Sbjct: 3 VDHLELKDFRSYEAAKLDIGPGVSVFVGPNGHGKTNLVEAVEYLSTLSSHRVSADAPLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ V G + + ++LE R+ +IN +R + + LR Sbjct: 63 AGTSQAIVRALVVAGRDDPRKLLLELEINAGRANHA-RINRAPVRRMRDFIGALRTVVFS 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFDSS 181 P + G +RR FLD +V PR D++R++R RN LL D Sbjct: 122 PEDLAMVKGDPTDRRAFLDALVITRWPRLAGVKSDYDRVLRQRNTLLKTLARRSSRVDGG 181 Query: 182 WCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-- 236 ++++ ++A+ G ++ AR+ ++ L M Y + ++ I + +D ++ Sbjct: 182 DVATLDVWNERLAQFGAELLAARLATLSDL----MPYA-RASYAAIA-PVNNRVDARYKS 235 Query: 237 -------------DQSFCALKE----------------EYAKKLFD---GRKMDSMSRR- 263 D + L E + A + D R+ D ++R Sbjct: 236 SLSGLSELLGYATDGAPGELPEAPDTDDEVRTPAPGPDQLAVLMMDAMAARRGDELARGV 295 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 TL+GPHR D+ + + S GE + + + L ++ P+L+LD++ Sbjct: 296 TLVGPHRDDVTL-TIGTLPAKGYASHGESWSLALALRLGSLDML-RADDVEPVLVLDDVF 353 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGT 350 A LD +R+ L V Q+ +T Sbjct: 354 AELDVTRRDRLADAVAK-AEQVLVTAA 379 >gi|293369424|ref|ZP_06616009.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CMC 3f] gi|292635591|gb|EFF54098.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CMC 3f] Length = 375 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 95/372 (25%), Positives = 161/372 (43%), Gaps = 50/372 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS F ++S Sbjct: 6 LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSS------ 55 Query: 67 IGSP----------SFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDE 115 G+P FF E +G + I ++ R + + + R D Sbjct: 56 -GNPIDSQNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDH 112 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174 + L + + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 113 IG-FLPLVMVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKS 171 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 E + E MA+ G + R + I E++ I S F+ Sbjct: 172 EFPVEEELFLVWEEMMAQAGAIVFQKR-------EAFIREFIP------IFQSFYSFISQ 218 Query: 235 KFDQSFCALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 D+ L E +A+ L R+ D + +L G H+ +L + + I G Sbjct: 219 --DKEVVGLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEG 275 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIF 346 S G+ K LV + LA + T P+LLLD+I LD + + ++V D QIF Sbjct: 276 SQGQNKTYLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIF 335 Query: 347 MTGTDKSVFDSL 358 +T T++ D + Sbjct: 336 ITDTNRGHLDRI 347 >gi|88798537|ref|ZP_01114121.1| recombination protein F [Reinekea sp. MED297] gi|88778637|gb|EAR09828.1| recombination protein F [Reinekea sp. MED297] Length = 364 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/349 (22%), Positives = 141/349 (40%), Gaps = 18/349 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+ RN AS RL +F GDNG GKT++LEAI L+ R F+ A V Sbjct: 6 LSFQGIRNLASARLNLSPGVNVFYGDNGAGKTSVLEAIHLLAMARSFKLARTRTVVSHEL 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 T +G + + ++ + +R +N + + +L + + + Sbjct: 66 EELLVTGELGDG----SRLGVRRTQKGQVQIR---LNGESLASLAQLVHLMPVQLIHSDS 118 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + G +RR+FLD VF ++ ++ RN LL G + S + E + Sbjct: 119 FALLEGSPGDRRQFLDWGVFHQTVAFHEDWQRLQKSLKNRNSLLRSGRIERSQLAVWERE 178 Query: 190 MAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 E +I+ R + + + + Q + P +++ D ++ Sbjct: 179 YIEAAERIDGYRKQYLEGFVPCFHDVLNQLVSLPELRIHYYRGWD---------RQKPLN 229 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 + L R D T GP R+D+ + +K S G+QK+V+ + +A + + Sbjct: 230 EVLEQQRDRDMKLGYTQSGPQRADMRIK-VNKVNAADELSRGQQKLVVCALKIAQSLYLQ 288 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + L+D++ A LD L ++ + SQ+FMT D + + Sbjct: 289 RQQNQPTVFLIDDLPAELDHHHIQRLGALMETLQSQVFMTCVDPAPLKT 337 >gi|15604793|ref|NP_219577.1| recombination protein F [Chlamydia trachomatis D/UW-3/CX] gi|166154295|ref|YP_001654413.1| recombination protein F [Chlamydia trachomatis 434/Bu] gi|166155170|ref|YP_001653425.1| recombination protein F [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|255310877|ref|ZP_05353447.1| recombination protein F [Chlamydia trachomatis 6276] gi|255317177|ref|ZP_05358423.1| recombination protein F [Chlamydia trachomatis 6276s] gi|301335547|ref|ZP_07223791.1| recombination protein F [Chlamydia trachomatis L2tet1] gi|13959461|sp|O84077|RECF_CHLTR RecName: Full=DNA replication and repair protein recF gi|226737775|sp|B0B9I2|RECF_CHLT2 RecName: Full=DNA replication and repair protein recF gi|226737777|sp|B0BB61|RECF_CHLTB RecName: Full=DNA replication and repair protein recF gi|3328469|gb|AAC67665.1| ABC superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] gi|165930283|emb|CAP03769.1| DNA replication and repair protein [Chlamydia trachomatis 434/Bu] gi|165931158|emb|CAP06723.1| DNA replication and repair protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|296435592|gb|ADH17766.1| recombination protein F [Chlamydia trachomatis G/9768] gi|296436516|gb|ADH18686.1| recombination protein F [Chlamydia trachomatis G/11222] gi|296437452|gb|ADH19613.1| recombination protein F [Chlamydia trachomatis G/11074] gi|297139951|gb|ADH96709.1| recombination protein F [Chlamydia trachomatis G/9301] gi|297748203|gb|ADI50749.1| RecF [Chlamydia trachomatis D-EC] gi|297749083|gb|ADI51761.1| RecF [Chlamydia trachomatis D-LC] Length = 365 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 129/320 (40%), Gaps = 8/320 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY LRL + G N GKTN+LEA+ LS GR FR + D Sbjct: 1 MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF +E + ++ L + D+ + + + I + EL + Sbjct: 61 IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 I G ERRRFLD ++ ++ + + + + RN + + S Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQ--NQKAIS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + G + R E L+++ + L L + + + Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y ++L D T++GPHR +L++ D + S G++ +L + A Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVA-KFSSEGQKHSLLAVLRFAEC 292 Query: 305 RLISNTTGFAPILLLDEISA 324 + P+L +D+I A Sbjct: 293 VYLQEEFCIHPLLCMDDIHA 312 >gi|330835986|ref|YP_004410627.1| DNA replication and repair protein recF [Spirochaeta coccoides DSM 17374] gi|329747889|gb|AEC01245.1| DNA replication and repair protein recF [Spirochaeta coccoides DSM 17374] Length = 359 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 86/358 (24%), Positives = 146/358 (40%), Gaps = 15/358 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L+I FRN + DA+ + VG+NG GKTN LEA+ L G FR + + Sbjct: 1 MRILSLDIHCFRNIRKASVDTDARSVMLVGENGQGKTNFLEALYVLCYGTSFRTPNLREA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F V+ +I +K + RS+ + + D I Sbjct: 61 VSHDGRGFSVKADFVDDSGNHHEIQVK-HVQGKRSIFIDRKE-----IYDRKELIYTIPC 114 Query: 125 LVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 +V D I G RRRF D+ + +P + ++R RN L EG S Sbjct: 115 IVFCHDDIEFVRGEPEARRRFFDQTMSMYNPLFFDDSRRYRNILRQRNAALKEGRL--SL 172 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+A G+ I AR + + + + + +++S+ K ++ Sbjct: 173 VPIYDFQLARYGMSIQKARKAAVKEFNDIFPRMYRDVSGTDLEISVEYQPSWKMAENAED 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +E ++ L + D + T G HR IV D+ + GSTG+ ++ + + +A Sbjct: 233 AEEILSRAL----ERDVRMQTTCSGVHRDKFIVKDADRPFSQT-GSTGQLRLASLILRMA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 A TG P+LL+D++ LD +R + D F ++ F SL + Sbjct: 288 QAGFFFGKTGKEPVLLIDDVLLELDVTRRGRFLSHIEDYSQAFFTFLPEEKYFSSLED 345 >gi|118615922|ref|YP_904254.1| recombination protein F [Mycobacterium ulcerans Agy99] gi|166220719|sp|A0PKB4|RECF_MYCUA RecName: Full=DNA replication and repair protein recF gi|118568032|gb|ABL02783.1| DNA replication and repair protein RecF [Mycobacterium ulcerans Agy99] Length = 385 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 32/364 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++A L T+FVG NG GKTNI+EA+ + + R + A + R Sbjct: 3 VRHLGLRDFRSWAHADLELGPGRTVFVGPNGFGKTNIIEALWYSATLGSHRVGTDAPLIR 62 Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST +G E ++ LE R+ + ++N +R E+ LR Sbjct: 63 AGADRAVISTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175 P + G +RRR+LD + P D+++++R R LL Sbjct: 118 APEDLALVRGDPADRRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKSVSGARFRGDR 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLT 229 G D+ ++++A+ G ++ AR++++ L+ + + Q + + S+ Sbjct: 178 GALDT--LDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAYRASMD 235 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT-LIGPHRSDLIVDYCDKAIT--IAH 286 F+ EE R+ + R L+GPHR DL + D+ +H Sbjct: 236 AFVAADDAAPDRVALEEGLLAALAARRDAELERGVCLVGPHRDDLELRLGDQPAKGFASH 295 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 G + + A + G P+LLLD++ A LD +R AL R V + Q+ Sbjct: 296 GESWS----MAVALRLAAFALLRADGSEPVLLLDDVFAELDAARRTALAR-VAESAEQVL 350 Query: 347 MTGT 350 +T Sbjct: 351 VTAA 354 >gi|294672977|ref|YP_003573593.1| DNA replication and repair protein RecF [Prevotella ruminicola 23] gi|294473002|gb|ADE82391.1| DNA replication and repair protein RecF [Prevotella ruminicola 23] Length = 366 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 94/365 (25%), Positives = 154/365 (42%), Gaps = 49/365 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ ++N A L F + +G NGVGKTN+L+AI +LS + V R G+ Sbjct: 6 LSVINYKNIAEATLDFSPKINCLIGQNGVGKTNVLDAIYYLSFCHSANNPIDSQVIRHGA 65 Query: 70 PSFFSTFARVEG----MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF EG G+ + K R+ + R L + +I VV + Sbjct: 66 -EFFVLEGAYEGDLHIYCGMKRGTKKHFKRNKKEYRRLSEHIGLIPVV----------VV 114 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSSW 182 PS + G S ERRR +D ++ + + M + + ++ RN +L E D Sbjct: 115 SPSDTLLIEGGSEERRRLMDMVIAQYEHGYMEAMNRYNKALQQRNAMLKLDEEPNLD--V 172 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S E QMA G +I +R + L+ + F I +++G ++ A Sbjct: 173 ISLFEEQMAYEGERIYKSRKAFVEELTPI---------FQRIHETISG------NREQVA 217 Query: 243 LKEEYAKKLFDGRKMDSMSR---------RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 L Y G ++ + R +L G HR DL + + GS G+ K Sbjct: 218 LN--YVSHCQRGPLLEVIQRDRFKDRAIGYSLHGVHRDDLEITLGGHLMK-REGSQGQNK 274 Query: 294 VVLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD 351 ++ + LA + T + P+LLLD+I LD + + ++V D QIF+T T+ Sbjct: 275 TFVIALKLAQFDFLKRTNSKTTPLLLLDDIFDKLDAQRVEQIVKLVAGDDYGQIFITDTN 334 Query: 352 KSVFD 356 + D Sbjct: 335 RDHLD 339 >gi|196228820|ref|ZP_03127686.1| DNA replication and repair protein RecF [Chthoniobacter flavus Ellin428] gi|196227101|gb|EDY21605.1| DNA replication and repair protein RecF [Chthoniobacter flavus Ellin428] Length = 352 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 77/316 (24%), Positives = 133/316 (42%), Gaps = 20/316 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + FR + + + F VG N GKT++LEA L + R A V + Sbjct: 13 LRGLKVRHFRCFDAREVEFAPGLNFIVGPNAHGKTSLLEAACILLRLQSPRITRLAHVIQ 72 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F V+G G+ + R + L +++V + E + R+ + Sbjct: 73 HERRGFV-----VDGYFGVRHLQFYF----SRERKKLALDEVEQKSAREYLEIGRVVYFA 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 S + G RRRFLD + D +R+ + D+ER +R RN LL ++ Sbjct: 124 NSDIELVRGSGDGRRRFLDFVATQRDGTYRQALRDYERALRSRNLLLKSSSPRWREIAAF 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + + G ++ AR ++I L + + + +L L G E+ Sbjct: 184 DEPLLSAGQRVAAARAKLIEELQPEAEKAHRGISGAREQLQLEYVPGGG---------ED 234 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + L D+ R+T GPHR D V + + + S G+Q+ +++ + L ARL Sbjct: 235 FPATLAAAHNEDARLRQTSAGPHRDD--VRFMLNGQSSSFASEGQQRTLVLALKLGAARL 292 Query: 307 ISNTTGFAPILLLDEI 322 + AP+LLLD+I Sbjct: 293 LEQRFESAPVLLLDDI 308 >gi|313835166|gb|EFS72880.1| recombination protein F [Propionibacterium acnes HL037PA2] gi|314929142|gb|EFS92973.1| recombination protein F [Propionibacterium acnes HL044PA1] gi|314970909|gb|EFT15007.1| recombination protein F [Propionibacterium acnes HL037PA3] gi|328905789|gb|EGG25565.1| DNA replication and repair protein RecF [Propionibacterium sp. P08] Length = 394 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 87/369 (23%), Positives = 161/369 (43%), Gaps = 32/369 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR+Y + + A T F+G NG GKTN++EA+ +LS R + + R Sbjct: 3 VERLELVDFRSYVRVDVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVNNDTPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 +G+ G + + +++E R+ R + R E+ LR Sbjct: 63 LGAGQAVVRGRVRAGADDARSLLLEVEINARRANRARINRAPLPR-PREILGVLRTVVFS 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEGYF 178 P+ + G +RR FLD +V PR D+ER+++ RN LL + G Sbjct: 122 PNDLTVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLAGKGRSAGAE 181 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF------- 231 + + ++A +G ++ AR++ ++A+ L +E P L+ + Sbjct: 182 IGATMDIWDDELATIGAELLSARLDTLSAVMPL-TSAAYREVAPVNDLATASYKSTIDLE 240 Query: 232 ------LDGKFDQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKA 281 +GK + + E A + R+ D + R TL+GP R D+++ + Sbjct: 241 GLWSPPQEGKSPEPID--RNELAHRFLAALAQRRADELIRGVTLVGPQRDDIVLQIGEMP 298 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 299 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDVTRRDRLAASVVQ- 355 Query: 342 GSQIFMTGT 350 Q+ +T Sbjct: 356 ADQVLVTAA 364 >gi|227487660|ref|ZP_03917976.1| recombination protein F [Corynebacterium glucuronolyticum ATCC 51867] gi|227092354|gb|EEI27666.1| recombination protein F [Corynebacterium glucuronolyticum ATCC 51867] Length = 267 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 116/268 (43%), Gaps = 15/268 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++ L L T+F G NG GKTNI+E+I +L+ R A + R Sbjct: 3 VRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ + V G ++ +++ T + Q+N +R EL +R Sbjct: 63 AGADAAQLAATVVSGGR---ELVVRM-TVKPHAANLAQLNRTRLRHPRELLGGVRCVLFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDS--S 181 P + +G RRR +D ++ PR ++ER+++ RN LL + ++ S Sbjct: 119 PEDLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSMHG 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 ++Q+A LG ++ AR +I L L+ E E PH + +L DQ Sbjct: 179 MLDVWDSQLASLGAELVTARSALITRLHPLV-EAAYLEIAPHSRPPAISYL--TRDQGET 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 + E A G RR GPH Sbjct: 236 TAETEDAAAHLAGGDPPPRDRR---GPH 260 >gi|307825354|ref|ZP_07655573.1| DNA replication and repair protein RecF [Methylobacter tundripaludum SV96] gi|307733529|gb|EFO04387.1| DNA replication and repair protein RecF [Methylobacter tundripaludum SV96] Length = 358 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 77/355 (21%), Positives = 151/355 (42%), Gaps = 15/355 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I RN +V + +G+N GK+ ++EAI L + FR ++ V Sbjct: 6 LDIYGVRNIQKESIVPSPAINLIIGENASGKSTLIEAIFILGRAKSFRSSAIKSVINFTQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + V+ + I+L+ ++ ++IN + +L L + + P Sbjct: 66 NHLVVSAQTVQENGSHLHLGIQLDGKNIE----IRINQQSKQKRSDLAYALPLQLIHPKS 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + S RR FLD VF D F++ + RN LL + + + + Sbjct: 122 YELLDAGSQIRREFLDWGVFNNDQNFLPAWRKFKKALSQRNALLKTRRLEQ--INVWDNE 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + G ++ R + + + +E + + L+L G LD + + KE +++ Sbjct: 180 LVYYGTIVDSYRQQYLEKFKPVFIEIIGR------FLALDG-LDLRLVSGWDTAKE-FSR 231 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + + D T GPHR D + + I S G+ K++++ + LA +L++N Sbjct: 232 VLIEDQDKDLRYGFTHSGPHRGDFQL-LVNNRIAKDFVSRGQLKLLVMSLKLAQVQLLAN 290 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 +L+D+ +A LD R L ++++ Q+F+T T+ F L++ + Sbjct: 291 EQSQTGCILIDDFAAELDVVNRAKLLHYLSEMACQVFITATETQDFGDLSQIKNY 345 >gi|255693357|ref|ZP_05417032.1| RecF protein [Bacteroides finegoldii DSM 17565] gi|260620834|gb|EEX43705.1| RecF protein [Bacteroides finegoldii DSM 17565] Length = 369 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 89/360 (24%), Positives = 156/360 (43%), Gaps = 26/360 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS F ++S + Sbjct: 3 LKRISILNYKNLEEVELGFSAKLNCFFGQNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58 Query: 67 IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 FF E +G + I ++ R + + + R D + L + Sbjct: 59 QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNTLLKSELPVEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQS 239 E MA+ G + R I + + ++ + LS +D Sbjct: 176 LFLVWEEMMAQAGEVVFKKREVFIKEFIPIFQSFYSFISQDKEQVGLS--------YDSH 227 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 A + + L R+ D + +L G H+ +L + + I GS G+ K LV + Sbjct: 228 --AREASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVAL 284 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358 LA + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 285 KLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRI 344 >gi|218291097|ref|ZP_03495120.1| DNA replication and repair protein RecF [Alicyclobacillus acidocaldarius LAA1] gi|218238982|gb|EED06189.1| DNA replication and repair protein RecF [Alicyclobacillus acidocaldarius LAA1] Length = 371 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 83/363 (22%), Positives = 152/363 (41%), Gaps = 30/363 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +FRNYA + + VG+NG GKTN LEA+ ++ G+ R D+ Sbjct: 1 MDIRRVELIDFRNYAQAEIELSPGVNVLVGENGQGKTNALEAMLLIAVGKSHRAHRDRDL 60 Query: 65 TRIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R + ARV E D + LE + R N V + + E +++ Sbjct: 61 IR-----WEQDRARVSLEASTRYGDRRLTLELGPEG--RRAFANGVQVGRMTEFVGQVQV 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF--DS 180 P + G RRRFLD + ++P + + + R + RNR L D Sbjct: 114 VLFAPEDLDLVKGGPRVRRRFLDTELGQMEPLYLHHLSLYNRALLQRNRWLKASPLSPDD 173 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---------KENFP-HIKLSLTG 230 ++ + Q+A G + + + + Y +E F + S++G Sbjct: 174 DVLATFDGQLAFHGAHV----IHRRLRFLARLRAYAARIYSDIASGREEFALAYRSSVSG 229 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +G + + + + L R D T +GPHR D+++ + D S G Sbjct: 230 VAEG---MTVEEMADTMQRALERNRAQDLRVGTTSVGPHRDDILL-FLDGREVHTSASQG 285 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE-DKRNALFRIVTDIGSQIFMTG 349 +Q+ + + + LA + G P+LLLD++ + LD+ +RN + + + + I T Sbjct: 286 QQRTIALSLRLAEIDFMHEELGEYPVLLLDDVLSELDDLRQRNLVLGMSRKVQTVITTTS 345 Query: 350 TDK 352 ++ Sbjct: 346 LNR 348 >gi|325678551|ref|ZP_08158162.1| DNA replication and repair protein RecF [Ruminococcus albus 8] gi|324109770|gb|EGC03975.1| DNA replication and repair protein RecF [Ruminococcus albus 8] Length = 379 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 88/367 (23%), Positives = 158/367 (43%), Gaps = 34/367 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+++ F+N + + + IF G N GKTN++EAI S R FR S D IG Sbjct: 6 LSVNGFKNLKGISIKPHEKINIFCGRNAQGKTNLIEAIWLCSGARSFR--STKDRRMIGD 63 Query: 70 PS--------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 F ++F E +A +IK + + +N V ++ +L L Sbjct: 64 DEQVMNIGLRFKNSFREQEIAFAMAKPNIKEKN--------VTLNGVKLKAPSKLFGGLN 115 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 P + G RR+F+D V I + +E L+ RN LL + + Sbjct: 116 CVIFTPEDLELSKGSPDNRRQFIDLSVAQIKNSYSAVTYKYEALIERRNLLLKNINYGKA 175 Query: 182 WCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF------- 231 +E Q+A++G I++ R LS+ ++ + KL ++ + Sbjct: 176 GKDELEMWDVQLAQMGAFISLHRYNYTKKLSAYAQMLYEEISGGSEKLDISYYSTVYDSE 235 Query: 232 -LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 LD K + LK+ Y + L + D + T G HR DLI + + S G Sbjct: 236 MLD-KATEYTGELKDRYFEVLKNNISDDLRAGFTQKGVHRDDLICKINGRPVR-EDASQG 293 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + + + + L+ A ++++ P++LLD++ + LD ++ + + D+ Q+F+T Sbjct: 294 QHRSAALIMKLSQAYILNDEIDDFPVILLDDVLSELDPSRQRFVISKIHDM--QVFITCC 351 Query: 351 DKSV-FD 356 D ++ FD Sbjct: 352 DMNIPFD 358 >gi|119714276|ref|YP_921241.1| recombination protein F [Nocardioides sp. JS614] gi|166220721|sp|A1SCL9|RECF_NOCSJ RecName: Full=DNA replication and repair protein recF gi|119534937|gb|ABL79554.1| DNA replication and repair protein RecF [Nocardioides sp. JS614] Length = 420 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 103/408 (25%), Positives = 166/408 (40%), Gaps = 83/408 (20%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +FR+YA+ + T F+G NG GKTN++EAI +LS R AS A + R Sbjct: 3 VAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ A V +G + +++E RS R ++N + +L +R Sbjct: 63 AGADQAVVRAAVVR--DGRTAV-LEVELNPGRSNRA-RVNRSPLPRARDLVGLVRTVVFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL------------- 173 P + G +RRRFLD ++ PR D++R++R RN LL Sbjct: 119 PEDLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQRNTLLKTARKGGFARKGG 178 Query: 174 ------------------------TEGYFDSSWCSS---------IEAQMAELGVKINIA 200 T G S S +A +A G ++ Sbjct: 179 FARKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELLAE 238 Query: 201 RVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGK--FDQSFCALKEEYAKKLF---D 253 R+ ++ AL YV K E +D K FD +++ + L + Sbjct: 239 RLALVEALRP----YVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEVE 294 Query: 254 GRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGST------------GEQKVVLVGIF 300 R+ D + R +L+GPHR +L+ +T+ HGS GE + + Sbjct: 295 RRRGDELDRGVSLVGPHRDELL-------LTLGHGSPDSRLPVKGYASHGESWSFALALR 347 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 LA L+ G PIL+LD++ A LD ++R L +V Q+ +T Sbjct: 348 LAAYDLL-RADGDDPILILDDVFAELDTERRAQLADLVAG-AEQVLVT 393 >gi|288924856|ref|ZP_06418793.1| RecF protein [Prevotella buccae D17] gi|288338643|gb|EFC76992.1| RecF protein [Prevotella buccae D17] Length = 372 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 151/362 (41%), Gaps = 28/362 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I ++N + + +G NGVGKTN L+A+ +LS R + + Sbjct: 3 LRKLSIVNYKNIRVANVDLSPKMNCLIGHNGVGKTNFLDAVYYLSFCRSAFNPVDSQLIT 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F G E I ++ + + + + L++H+ + LV Sbjct: 63 HGEDFFVLEGEYDTGAEDSEQIYCGMKRGTKKHFKRNK------KEYKRLSQHIGLIPLV 116 Query: 127 ---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181 PS + G S ERR LD ++ D + + + + ++ RN LL +G D + Sbjct: 117 FVSPSDTSLIEGASEERRHLLDVVIAQYDRSYMESLAAYNKALQQRNALLKTEDGEPDET 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E +MA G I R + + L + + Q + +SL S C Sbjct: 177 LMEIWEEEMARNGELIYQKRNDFVRELIPVFQDIYQHISQQREIVSLKYV-------SHC 229 Query: 242 ---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L E + F R + +L G HR DL + D GS G+ K ++ Sbjct: 230 QRGPLLEVIRRDRFKDRAVGY----SLHGVHRDDLEM-LIDGYQLKKEGSQGQNKTFVLA 284 Query: 299 IFLAHARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD 356 + LA + NTT G P+LLLD+I LD + + ++V+ D QIF+T T++ D Sbjct: 285 LKLAQFNFLKNTTSGTTPLLLLDDIFDKLDAQRVEQIVKLVSGDNFGQIFITDTNRDHLD 344 Query: 357 SL 358 + Sbjct: 345 KI 346 >gi|315607883|ref|ZP_07882876.1| recombination protein F [Prevotella buccae ATCC 33574] gi|315250352|gb|EFU30348.1| recombination protein F [Prevotella buccae ATCC 33574] Length = 372 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 151/362 (41%), Gaps = 28/362 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I ++N + + +G NGVGKTN L+A+ +LS R + + Sbjct: 3 LRKLSIVNYKNIRVTNVDLSPKMNCLIGHNGVGKTNFLDAVYYLSFCRSAFNPVDSQLIT 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F G E I ++ + + + + L++H+ + LV Sbjct: 63 HGEDFFVLEGEYDTGAEDSEQIYCGMKRGTKKHFKRNK------KEYKRLSQHIGLIPLV 116 Query: 127 ---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181 PS + G S ERR LD ++ D + + + + ++ RN LL +G D + Sbjct: 117 FVSPSDTSLIEGASEERRHLLDVVIAQYDRSYMESLAAYNKALQQRNALLKTEDGEPDET 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E +MA G I R + + L + + Q + +SL S C Sbjct: 177 LMEIWEEEMARNGELIYEKRNDFVRKLIPVFQDIYQHISQQREIVSLKYV-------SHC 229 Query: 242 ---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L E + F R + +L G HR DL + D GS G+ K ++ Sbjct: 230 QRGPLLEVIRRDRFKDRAVGY----SLHGVHRDDLEM-LIDGYQLKKEGSQGQNKTFVLA 284 Query: 299 IFLAHARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD 356 + LA + NTT G P+LLLD+I LD + + ++V+ D QIF+T T++ D Sbjct: 285 LKLAQFNFLKNTTSGTTPLLLLDDIFDKLDAQRVEQIVKLVSGDNFGQIFITDTNRDHLD 344 Query: 357 SL 358 + Sbjct: 345 KI 346 >gi|78780050|ref|YP_398162.1| DNA replication and repair protein RecF [Prochlorococcus marinus str. MIT 9312] gi|78713549|gb|ABB50726.1| DNA replication and repair protein RecF [Prochlorococcus marinus str. MIT 9312] Length = 297 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/262 (22%), Positives = 127/262 (48%), Gaps = 14/262 (5%) Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 +N+ +++ E+ ++R + I RR ++D++VF ++P + + F R Sbjct: 28 VNESILKKQSEIKNYIRSVCFCSNDINIVRSEPSYRRTWIDKVVFQLEPVYLDLISRFNR 87 Query: 165 LMRGRNRLL-TEGYFDSS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 L++ R+ +E + +S C S + QM+ + +I R + + I EY Sbjct: 88 LLKQRSHFWRSESFLNSQSSDICESFDMQMSIISTRIFRRRRRALLKIKPYI-EYWHNHL 146 Query: 221 FPHIKLSLTGFLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 + +L G + S + ++ A++L + R +++++ + GPHR D + Sbjct: 147 SKSKEQIGINYLSGIQNISPEEEEEEVISKKIAEQLLNQRSIEALTGKCNFGPHRDD--I 204 Query: 276 DYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 ++ I++ +GS+G+Q+ ++ + +A +S T +PIL+LD++ A LD ++N L Sbjct: 205 EFLINNISVRKYGSSGQQRTFILALKMAELDFLSKTLNVSPILILDDVLAELDITRQNLL 264 Query: 335 FRIVTDIGSQIFMTGTDKSVFD 356 V SQ F++ T F+ Sbjct: 265 LNSVGK-DSQCFISATHLDKFN 285 >gi|260885575|ref|ZP_05897039.1| RecF protein [Prevotella tannerae ATCC 51259] gi|260851611|gb|EEX71480.1| RecF protein [Prevotella tannerae ATCC 51259] Length = 342 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 85/332 (25%), Positives = 148/332 (44%), Gaps = 29/332 (8%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI--GSPSFFSTFARVEGMEGLADIS 89 FVGDNG+GKTN+L+AI +LS + R S DVT + G +F ++GL D Sbjct: 5 FVGDNGMGKTNLLDAIYYLSFCKSAR--SSTDVTNVKHGEQAFM--------LQGLYDDD 54 Query: 90 IKLETR-----DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL 144 E + + + L+ N I+ E + + + PS + +G S RRRF+ Sbjct: 55 TGGEDKIAIGYHEGRRKQLRRNGKDIKRFAEHIGTIPLVMISPSDSELVTGGSDNRRRFM 114 Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVE 203 D ++ D + ++ +E+ +R RN LL E ++ S IE M+ I R Sbjct: 115 DTVIAQYDATYLEALMRYEKTLRQRNALLKKEEEPEADVISIIEDIMSRDAAIIYQGRKL 174 Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 + ++ ++ + ++++ G + + E+Y R + + Sbjct: 175 FVETFTAFFQGIYRELCYDPEQVNIVYESHGNRGE-LKPMLEQY-------RSRERLVGY 226 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-HARLISNTTGFAPILLLDEI 322 TL G H+ DL++ Y + S G+ K + + LA + L + ++ P+LLLD+I Sbjct: 227 TLHGIHKDDLLL-YINGYPVKQEASQGQTKTYFIALKLAQYVYLRTKSSLRQPLLLLDDI 285 Query: 323 SAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS 353 LD + + R + QIF+T T K Sbjct: 286 FDKLDAGRVEHIIRYAAEAQFGQIFITDTSKE 317 >gi|297622419|ref|YP_003703853.1| DNA replication and repair protein RecF [Truepera radiovictrix DSM 17093] gi|297163599|gb|ADI13310.1| DNA replication and repair protein RecF [Truepera radiovictrix DSM 17093] Length = 352 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 80/358 (22%), Positives = 151/358 (42%), Gaps = 41/358 (11%) Query: 7 IKFLNISE--FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ L++ + +RN + R+ F T VG N GK+N+LEA+ G A+ Sbjct: 1 MRLLSLQQLNYRNLNTPRVTFGGGVTAIVGRNAAGKSNLLEAVYLGLTGE-LPHGKIAEA 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETR------DDRSVRCLQINDVVIRVVDELNK 118 R+G F + ++E GL+ + + L D +SVR ++ V V+ Sbjct: 60 VRLGESEGFVSV-KLEHGGGLSTVQVGLAPGRKTVRLDGQSVRAFELARVSAAVL----- 113 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + P + G RR +LD ++ + R+ ++ R++ RN L + Sbjct: 114 ------ITPEDAELVHGPPALRRGYLDTLLSRLSLRYALLQREYTRVVEQRNAALKSLPY 167 Query: 179 DSSWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDG- 234 + LG +I R + + ++ + ++ P + +S G Sbjct: 168 GDPTLEVWTERFVALGDEITALRERALARVGEVARASYAEISGDDKP-LGVSHRAAAQGV 226 Query: 235 KFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + A + EE A+ + T++GPHR DL + ++ A+GS GE + Sbjct: 227 GLRAALAATQHEERARGV------------TVVGPHRDDLELTLAGHSVQ-AYGSRGEAR 273 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 V + + +A L+ AP+LL+D+ +A LD +R L ++ Q ++GT+ Sbjct: 274 TVALALRVAEYTLLQEKLREAPVLLIDDFTAELDASRREFLLQLAAR-APQALVSGTE 330 >gi|288939767|ref|YP_003442007.1| DNA replication and repair protein RecF [Allochromatium vinosum DSM 180] gi|288895139|gb|ADC60975.1| DNA replication and repair protein RecF [Allochromatium vinosum DSM 180] Length = 358 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 30/355 (8%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M ++ L I RN L L D + + G NG GKT++LEAI L+ GR FR Sbjct: 1 MDPEPGLRSLRIESLRNIRRLDLAPDTRTLLLTGANGAGKTSVLEAIYLLARGRTFRGTK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELN 117 +T G F++ RVEG +D + ++ +VR + + Sbjct: 61 AGPLTTQG--EFYT---RVEGRYQPSDRDVVRLRYVKEGATAVRDIHPPLWAETGGADWR 115 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 L++ + + + G RRRFLD VF ++ R + DF R++ RN + G Sbjct: 116 SPLQVKLVGENAQILLDGDPSLRRRFLDWNVFHVEHRFAQVQKDFTRVLMQRNAAIRSG- 174 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSL-TGFLDGK 235 S + + L ++ R + ++ F H L G+ DG+ Sbjct: 175 --GSQLGLWDRRFIALAESVDRQRAAFHAEWRTCFLDLCGDYPFLHGTDLRYRRGWPDGR 232 Query: 236 -FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 ++ AL ++ + + TL GP R+D +D + + G T K+ Sbjct: 233 ELGETLVALADQELARGY-----------TLAGPSRADFRIDPGEGRRGFSRGQT---KI 278 Query: 295 VLVGIFLAHARLISNTTGFAPIL-LLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 V+ + LA R + G P++ LLD++ A LD L+ G+Q+ T Sbjct: 279 VVALLQLAAER-VHRAHGREPVIWLLDDLEAELDRTLAERLWSAFGATGNQVIAT 332 >gi|317050202|ref|YP_004111318.1| DNA replication and repair protein RecF [Desulfurispirillum indicum S5] gi|316945286|gb|ADU64762.1| DNA replication and repair protein RecF [Desulfurispirillum indicum S5] Length = 343 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 82/322 (25%), Positives = 138/322 (42%), Gaps = 44/322 (13%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FR A L F G NG GKT+ LE IS + G+ FR + + R GS Sbjct: 7 VRNFRCIADAVLSFTPGINALCGVNGSGKTSFLEVISICANGKSFRTNTLRECVRKGSDG 66 Query: 72 F----------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 F TF + + L + E R +R + + IN V++ Sbjct: 67 FSLTLENDRHILQTFLLHKNVRRL----LIGEHRPERLSQYININTVLV----------- 111 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 L P + + S RR+F+DR VF P + + R+++ RN LL + D S Sbjct: 112 ---LSPEDIDLVAHSSGMRRKFIDRGVFEQHPEYLSTLSYLHRILKNRNALLRQK--DHS 166 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSLTGFLDGKF--DQ 238 + + ++I+ R + L + + + ++P I ++ D ++ Q Sbjct: 167 TLPYWNDLLCQYALQIHEYRKKYTQQLQLSVNSIISQMDYPKGISITYINSGDDEYTDTQ 226 Query: 239 SFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +F AL+++Y+ + G TLIGPH+ ++ V D+ + S G+QK+V + Sbjct: 227 AFLRALEKKYSDEKRYG--------YTLIGPHKDEITVT-IDELSAGKYASYGQQKMVAM 277 Query: 298 GIFLAHARLISNTTGFAPILLL 319 + LA A LI P+LL+ Sbjct: 278 IMKLAQAELIQQHQK-EPVLLV 298 >gi|153807585|ref|ZP_01960253.1| hypothetical protein BACCAC_01867 [Bacteroides caccae ATCC 43185] gi|149129947|gb|EDM21159.1| hypothetical protein BACCAC_01867 [Bacteroides caccae ATCC 43185] Length = 369 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 94/365 (25%), Positives = 158/365 (43%), Gaps = 36/365 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + + F A+ F G NG+GKTN+L+A+ FLS F ++S + Sbjct: 3 LKRISILNYKNLEEVEIDFSAKLNCFFGQNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58 Query: 67 IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 FF E +G + I ++ R + + + R D + L + Sbjct: 59 QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYGRFSDHIG-FLPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 116 VMVSPADSELIAGGSEERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSEFPVEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E MA+ G + R I KE P I S F+ D+ Sbjct: 176 LFLVWEEMMAQAGEVVFRKREAFI------------KEFIP-IFQSFYSFISQ--DKESV 220 Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 L E +A+ L R+ D + +L G H+ +L + + I GS G+ K Sbjct: 221 GLSYESHARDTSLLDVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353 LV + LA + T P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRE 339 Query: 354 VFDSL 358 D + Sbjct: 340 HLDRI 344 >gi|301165374|emb|CBW24945.1| putative DNA replication and repair protein RecF [Bacteriovorax marinus SJ] Length = 370 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 77/360 (21%), Positives = 160/360 (44%), Gaps = 24/360 (6%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-ASYADV 64 KI L ++ FRN + F++ +G+NG GKTNILEA+ LS + FR+ ++ Sbjct: 5 KISKLQVTNFRNLQPDIIEFNSGINCILGENGNGKTNILEALHVLSTRKSFRKNTAFPQF 64 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 I F+ V E +S+ + D ++ + R +D +++ + Sbjct: 65 LGIDCEQPEIIFSSVFLDEHSNKMSLSAKM-DAKTTHWFVDGQPMKRKLD-----IKLVF 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 + P F S RR+++D+ + ID +++ + + +R RN LL++ Y + Sbjct: 119 INPFDSYAFHNTSSFRRQWMDQHISQIDSNYKKCLSRYNSSLRFRNSLLSKKPAKYLEQ- 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH---IKLSLTGFLDGKFDQ 238 +I+ ++A + R++ ++ + S + KE F +K++L + G + Sbjct: 178 -IRAIDLELARYSCILTNTRLKFLSEIESFCTQTF-KEIFSEEHLLKITLDSRVIGASED 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + +E K D + T H+ D ++ + D + + S G+QK+ + Sbjct: 236 DIYQMLQERLPK-------DEIVGHTTYCVHKDDYVLLF-DGLNSFEYCSLGQQKMSYLS 287 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + A+ L P++L+D++S LD+++ L + Q+ +T ++ + L Sbjct: 288 LLFAYIELFRYNFNSFPMVLIDDVSGELDKNRWQKLINYLERSSFQVLITTANEKFKEEL 347 >gi|254431064|ref|ZP_05044767.1| DNA replication and repair protein RecF [Cyanobium sp. PCC 7001] gi|197625517|gb|EDY38076.1| DNA replication and repair protein RecF [Cyanobium sp. PCC 7001] Length = 391 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 17/299 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 I+++ L + +FRN L L +A + +G NG GK+N+LE + L R R S D+ Sbjct: 23 IRLERLELLQFRNITRLELNLEASRLLVLGPNGEGKSNLLEGVELLGSLRTHRTGSDRDL 82 Query: 65 TRIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G + AR+ G+ + + ++L R R R + + R +D L +S Sbjct: 83 IQQG-----CSHARIRGLTARGELLQLELRHRGGREAR--RNGKPLERQLDLLGDLRCVS 135 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + ++ + G RR++LDR+V ++P + + + RL+R R++LL G Sbjct: 136 FSALDLE-LVRGEPAGRRQWLDRVVLQLEPLYGELLSRYGRLLRQRSQLLRRGLGGGEQA 194 Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFD 237 ++A QMA +G +++ R + L L + Q+ + L++ + G + D Sbjct: 195 GLLDAFDQQMAVVGTRLHRRRHRALQRLEPLAAHWQQRLSGGRDALAIA-YRSGTHLEGD 253 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ + +L R + + +GPHR ++ + + +GS G+Q+ ++ Sbjct: 254 EAEEPWRAALHSQLAAQRDTELRLGQCSVGPHRDEVALSLGGQPAR-RYGSAGQQRTLV 311 >gi|308235535|ref|ZP_07666272.1| DNA replication and repair protein recF [Gardnerella vaginalis ATCC 14018] gi|311114016|ref|YP_003985237.1| recombination protein F [Gardnerella vaginalis ATCC 14019] gi|310945510|gb|ADP38214.1| recombination protein F [Gardnerella vaginalis ATCC 14019] Length = 422 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 85/369 (23%), Positives = 154/369 (41%), Gaps = 51/369 (13%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FR+++S L F + + G NG+GKTNI+EAI +S G R +S + + Sbjct: 8 LDHFRSWSSCVLDFSPKINVLFGSNGLGKTNIVEAIEVISTGTSHRISSLMPLIECNNSC 67 Query: 72 F-----FSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIRVVDELNKHLRIS 123 F + E +++I + + S + L + D++ V IS Sbjct: 68 ATIRLNTKNFDNNDLDETTYELTINSKGANRARINSGKSLYMKDIIGLVK-------SIS 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---------- 173 + + IFS ++ RR F+D+ + P + + + ++ + + R LL Sbjct: 121 FTPRDQNLIFSDPNI-RRTFIDQAGALLIPNYLQVLQEYNHIAKQRAYLLKSLSNNNLAS 179 Query: 174 -TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI--KLS-LT 229 T GY S + E G+ + R ++IN L+ + FP I KLS + Sbjct: 180 STNGYNPISDLEIWTGKFIESGIILTKNRKKIINLLNEI---------FPKIVDKLSRSS 230 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR----------TLIGPHRSDLIVDYCD 279 F +++ SF L+ E + F + +R LIGPHR D + + Sbjct: 231 NFASIQYNPSFEELEVESKEDYFPQTAISEHFQRIYAGEVARGYNLIGPHRDDFTI-LIN 289 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 S GE + + + +A + + PI++LD++ + LDE +R + Sbjct: 290 NHPAKEFASNGEAWTLALALKMALFKTLEEKNNQKPIVILDDVFSQLDESRRKQILEFAK 349 Query: 340 DIGSQIFMT 348 + Q+F+T Sbjct: 350 E-QEQVFIT 357 >gi|281419667|ref|ZP_06250666.1| RecF protein [Prevotella copri DSM 18205] gi|281406196|gb|EFB36876.1| RecF protein [Prevotella copri DSM 18205] Length = 405 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 89/371 (23%), Positives = 159/371 (42%), Gaps = 47/371 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I F+N S L + +G NG+GKTN L+AI +LS R + + + Sbjct: 43 LKNISIINFKNIKSANLELSPKINCLIGHNGMGKTNFLDAIYYLSFCRSAYNSIDSQIIT 102 Query: 67 IGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 P FF + +G + ++ ++ + + + + L++H+ + L Sbjct: 103 HDEP-FFMLEGNYDNDKGEIENVYCGMKRGTKKHFKRNK------KEYKRLSQHIGLIPL 155 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSS 181 + PS + G S ERR+ +D ++ D + + ++ + ++ RN LL E D + Sbjct: 156 ILVSPSDVSLIEGGSEERRKLMDVVISQYDYSYIEALSNYNKALQQRNALLKMEEEPDIT 215 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E QMA G + R ++ L L + Q+ + G +Q Sbjct: 216 ILELWEQQMASNGELLYQKRQAFVDELVPLFQQIYQQ-------------ISGDKEQ--- 259 Query: 242 ALKEEYAKKLFDGRKMDSMSR---------RTLIGPHRSDL---IVDYCDKAITIAHGST 289 ++ Y G +D + R +L G HR DL + DY K GS Sbjct: 260 -VRLHYVSHCQRGPLLDVIQRDRFKDRAVGYSLHGVHRDDLEFLLGDYPMKR----EGSQ 314 Query: 290 GEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVT-DIGSQIFM 347 G+ K ++ + LA + T+ P+LLLD+I LD + A+ ++V D QIF+ Sbjct: 315 GQNKTFVIALKLAQFTFLQRTSSNTLPLLLLDDIFDKLDAQRVEAIVKLVAGDHFGQIFI 374 Query: 348 TGTDKSVFDSL 358 T T++ D + Sbjct: 375 TDTNRDHLDKI 385 >gi|291278435|ref|YP_003495270.1| hypothetical protein DEFDS_0002 [Deferribacter desulfuricans SSM1] gi|290753137|dbj|BAI79514.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 333 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 79/352 (22%), Positives = 156/352 (44%), Gaps = 34/352 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I RN L + FD + +G+NG GKT ILE+I + FR + ++ I S Sbjct: 6 LKIVNVRNIEHLSIKFDHKRNYIIGENGSGKTTILESIVTSLYRKSFRTSKIEELKSINS 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F + + + GL + + D + + IN+ I + + H + P Sbjct: 66 P--FLSISSIFIKNGL-NYTFTFNYSDKKKLHL--INNKKIDKLLNIISHFPLIVHSPYY 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + + + + FLD++V D ++ + F +L++ + +L+TE D+ ++I Sbjct: 121 EGLTDKSNRNKLTFLDKIVILADKSYKENLSKFNKLLKHKRKLITESN-DTKLINTINDL 179 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENF-PHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++E+ E+I Y +++NF + + L + K + LK+ Sbjct: 180 LSEI--------YELI---------YKKRKNFLEQLNMRLKDYESTK--KISIELKKNKT 220 Query: 249 KKLFDGRKMDSMS-RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 K +F ++ ++ ++ L+ + + + +K I S G++K + + I + ++I Sbjct: 221 KDVF----LNELALKKILLTQYSQKIYITSENKNIE-NLLSFGQKKELSIFIIYSFLKII 275 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 I+LLD+ A LDE K + I +D +Q+ +TG D +N Sbjct: 276 EEIIKDGIIILLDDFEAGLDESKVKNFYEIFSD--NQLILTGVDNKYLSGIN 325 >gi|88705398|ref|ZP_01103109.1| DNA replication and repair protein recF [Congregibacter litoralis KT71] gi|88700488|gb|EAQ97596.1| DNA replication and repair protein recF [Congregibacter litoralis KT71] Length = 352 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 86/334 (25%), Positives = 139/334 (41%), Gaps = 18/334 (5%) Query: 27 AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLA 86 A H + G NG GKT++LEA L R FR + G S+ R G Sbjct: 2 ALHNVIYGVNGSGKTSLLEAAHILGTARSFRSGGAKSLISHGEESYVVRGERRSPTGGSM 61 Query: 87 DISIKLETRDDRSVRCL-QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 I ++ E S+R + + V R+ DEL L S S D + G RRRFLD Sbjct: 62 AIGVQREKAGAISLRLAGEPSRSVSRLADELPLLLINS---DSFD-LLVGEPANRRRFLD 117 Query: 146 RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 VF ++ R F+R + RN LL D S +A +++ R + Sbjct: 118 WGVFHVEHELRDSRQRFQRALTQRNHLLRRAKLDPSELQVWTRDLAVHAERVSSGRERFL 177 Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 +L + E + E P I + G +D S Y + L D T Sbjct: 178 ESLRE-VFEPLIAELAPEIGPVALVYRRG-WDAS-----SSYEEVLQRSLTSDQEQGFTQ 230 Query: 266 IGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 GP R+D+ V A T+ S G+QK+++ + LA +++++ G + L+D++ Sbjct: 231 TGPQRADIRVTVGGYSAAETL---SRGQQKLLVCALKLAQGQILASEQGNV-LYLIDDLP 286 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LD ++ + R + + Q +T +S + Sbjct: 287 SELDAERCERVCRTLAAMQVQTLITCVTRSAIPA 320 >gi|261493354|ref|ZP_05989880.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496620|ref|ZP_05993000.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307823|gb|EEY09146.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310998|gb|EEY12175.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 372 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 147/355 (41%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN L F VG NG GKT++LE+I +L GR F+ + Sbjct: 17 LLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIFYLGHGRSFKSHISNRIIHYDK 76 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVDELNKHLRISWLVPS 128 F + G A S + + RS L+IN + +L L + + P Sbjct: 77 DDFV-----LHGKIDEAKHSWSVGIQKFRSGETTLKINGEDGNKIADLAHLLPMQVITPE 131 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSS 185 + +G RR FLD +F P + RL++ RN L + Y + +W Sbjct: 132 GLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQRNSALQQVRSYQELKAW--- 188 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ + ++ R E AL I + Q P I++ L+ F Q + Sbjct: 189 -DIELVKTTYAVSEMRAEYAEALRPEIEKTCQF-FLPEIEIGLS------FHQGW-EKGA 239 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 +YA+ L G + D T+IG ++D + S G+ K+++ + LA Sbjct: 240 DYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQGE 298 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T + D LN+ Sbjct: 299 HLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ---DQLNQ 350 >gi|254360631|ref|ZP_04976780.1| DNA recombination protein RecF [Mannheimia haemolytica PHL213] gi|153091171|gb|EDN73176.1| DNA recombination protein RecF [Mannheimia haemolytica PHL213] Length = 361 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 147/355 (41%), Gaps = 25/355 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN L F VG NG GKT++LE+I +L GR F+ + Sbjct: 6 LLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIFYLGHGRSFKSHISNRIIHYDK 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVDELNKHLRISWLVPS 128 F + G A S + + RS L+IN + +L L + + P Sbjct: 66 DDFV-----LHGKIDEAKHSWSVGIQKFRSGETTLKINGEDGNKIADLAHLLPMQVITPE 120 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSS 185 + +G RR FLD +F P + RL++ RN L + Y + +W Sbjct: 121 GLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQRNSALQQVRSYQELKAW--- 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ + ++ R E AL I + Q P I++ L+ F Q + Sbjct: 178 -DIELVKTTYAVSEMRAEYAEALRPEIEKTCQF-FLPEIEIGLS------FHQGW-EKGA 228 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 +YA+ L G + D T+IG ++D + S G+ K+++ + LA Sbjct: 229 DYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQGE 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + + L+D+ ++ LD KR L + + GSQ+F+T + D LN+ Sbjct: 288 HLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ---DQLNQ 339 >gi|332071497|gb|EGI81991.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA41301] Length = 255 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/260 (22%), Positives = 118/260 (45%), Gaps = 17/260 (6%) Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-F 178 + + P ++ G RR+F+D + I P + + ++ +++ RN L Sbjct: 1 MNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKI 60 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP------HIKLSLTGFL 232 D ++ S ++ Q+ + G ++ R++ I L S + +K++F + +S + Sbjct: 61 DETFLSVLDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSV 116 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + Q+ L E + L R D + T +GPHR D + + + + GS G+ Sbjct: 117 NITDKQN---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQH 171 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + +++ I LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T Sbjct: 172 RSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSL 230 Query: 353 SVFDSLNETAKFMRISNHQA 372 +L E I + +A Sbjct: 231 DHLQNLPENLSIFTIQDGKA 250 >gi|317054735|ref|YP_004103202.1| DNA replication and repair protein RecF [Ruminococcus albus 7] gi|315447004|gb|ADU20568.1| DNA replication and repair protein RecF [Ruminococcus albus 7] Length = 376 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 157/380 (41%), Gaps = 31/380 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+++ F+N ++ + + IF G N GKTN++EAI S R FR S D IG Sbjct: 6 LSVNGFKNLKNIEIKPHEKINIFCGKNAQGKTNLIEAIWLCSGARSFR--STKDRRMIGD 63 Query: 70 P--------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 SF ++F + +A +IK ++SV +N V ++ +L L Sbjct: 64 DEQVMEICLSFKNSFREQDIRYAMAKPNIK-----EKSVF---LNGVKLKAPSKLFGGLN 115 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 P + G RRRF D V I + +E+L+ RN LL + Sbjct: 116 CVIFTPEDLELSKGSPDNRRRFADLSVSQIKNSYSAVTEKYEKLIDQRNTLLKNISYGRG 175 Query: 182 WCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF------- 231 +E Q+A++G I++ R L ++ + + + +L + + Sbjct: 176 RREELEMWDIQLAQMGAYISLLRFNYTRKLCAIAKKLYSEISGGSEELDIDYYSTVYDTK 235 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 L G L E+Y L + D + T G HR DLI + S G+ Sbjct: 236 LLGAASVYTGELTEQYLNVLKNNIDDDIRAGFTQKGVHRDDLICRINGSPVR-EDASQGQ 294 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + V + + L+ A ++ P++LLD++ + LD ++ + + D+ Q+F+T D Sbjct: 295 HRSVALIMKLSQAYILHEEIDDHPVILLDDVLSELDPSRQKFVISKIHDM--QVFITCCD 352 Query: 352 KSVFDSLNETAKFMRISNHQ 371 ++ + K I Q Sbjct: 353 MNIPFDEKQHGKIFNIEKGQ 372 >gi|258510024|ref|YP_003183458.1| DNA replication and repair protein RecF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476750|gb|ACV57069.1| DNA replication and repair protein RecF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 371 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 83/363 (22%), Positives = 151/363 (41%), Gaps = 30/363 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +FRNYA + + VG+NG GKTN LEA+ ++ G+ R D+ Sbjct: 1 MDIRRVELHDFRNYAKAEIELSPGVNVLVGENGQGKTNALEAMLLIAVGKSHRAHRDRDL 60 Query: 65 TRIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R + AR+ E D + LE + R N V + + E +++ Sbjct: 61 IR-----WEQDRARILLEASTRYGDRRLTLELGPE--GRRAFANGVQVGRMTEFVGQVQV 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF--DS 180 P + G RRRFLD + ++P + + + R + RNR L D Sbjct: 114 VLFAPEDLDLVKGSPRVRRRFLDTELGQMEPLYLHHLSLYNRALLQRNRWLKTAPLSPDD 173 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---------KENFP-HIKLSLTG 230 ++ + Q+A G + + + + Y +E F + S++G Sbjct: 174 DVLATFDRQIAFHGAHV----IHRRLRFLARLRAYAARIYSDIASGREEFALAYRSSVSG 229 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +G S + + + L R D T GPHR D+++ + D S G Sbjct: 230 VEEG---MSVEEMADTVQRALEKNRAQDLRFGTTSAGPHRDDILL-FLDGREVHTAASQG 285 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE-DKRNALFRIVTDIGSQIFMTG 349 +Q+ + + + LA + G P+LLLD++ + LD+ +RN + + + + I T Sbjct: 286 QQRTIALSLRLAEIDFMHEELGEYPVLLLDDVLSELDDLRQRNLVLGMSRKVQTVITTTS 345 Query: 350 TDK 352 ++ Sbjct: 346 LNR 348 >gi|282889709|ref|ZP_06298248.1| hypothetical protein pah_c004o056 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500283|gb|EFB42563.1| hypothetical protein pah_c004o056 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 236 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 5/164 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +FR+Y + F + G N +GKT ILEAI FL GR FR + D+ + G+ Sbjct: 6 LHLHQFRSYREAKFTFSPSINLICGPNAIGKTTILEAIHFLMTGRSFRTSQINDLIQKGT 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S+FS +E I KL+ + R + +N L + P Sbjct: 66 -SYFS----IEASFIKQGIEQKLKIFYNGKERKIVLNQTPYYSFTHLLGMFYGVCMSPDD 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 + G + RR FLD + DP + ++ F R MR RN LL Sbjct: 121 SALIKGAPLMRRSFLDLQLAQSDPLYVHKLTRFTRAMRQRNYLL 164 >gi|332071306|gb|EGI81801.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA17545] Length = 199 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 93/200 (46%), Gaps = 6/200 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G+ SI LE + R ++N + + + H+ + Sbjct: 63 FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ S Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177 Query: 186 IEAQMAELGVKINIARVEMI 205 ++ Q+ + G ++ R++ I Sbjct: 178 LDDQLVDYGCRVMNHRLDFI 197 >gi|325297260|ref|YP_004257177.1| DNA replication and repair protein recF [Bacteroides salanitronis DSM 18170] gi|324316813|gb|ADY34704.1| DNA replication and repair protein recF [Bacteroides salanitronis DSM 18170] Length = 372 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 87/381 (22%), Positives = 164/381 (43%), Gaps = 32/381 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F + +G NG+GKTN+++A+ +LS F +++ + Sbjct: 3 LKRISILNYKNLEQVELAFSKKLNCIIGKNGMGKTNLMDAVYYLS----FCKSATNPIDS 58 Query: 67 ---IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + FF F +G E ++ L+ R + + + + L+ H+ Sbjct: 59 QNILHERDFFVIQGFYETDGGEP-EEVYCGLKRRQKKQFKRNK------KEYSRLSDHIG 111 Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGY 177 + LV P+ + +G S ERRRF+D ++ D + +I + + ++ RN LL E Sbjct: 112 LIPLVMVSPADSWLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALQQRNALLKAEIE 171 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + + E MA G + R + ++ + Y + ++SL Sbjct: 172 PEEELMALWEEAMASTGKLVFQKRKDFVDEFIPVFQSYYAYISQGREQVSLMYESHAAHG 231 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 LKE R+ D + + G H+ DLI++ + GS G+ K L+ Sbjct: 232 NLLQLLKE--------SRQRDRILGYSTKGIHKDDLIMELGGFPMK-REGSQGQNKTYLI 282 Query: 298 GIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVF 355 + LA + PI+LLD+I LD + + ++V D QIF+T T++ Sbjct: 283 ALKLAQFDFLKRAGNRTVPIVLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHL 342 Query: 356 DS-LNETAKFMRISNHQALCI 375 D L+E + + + C+ Sbjct: 343 DKILSEVGEDYNLFEVEGGCV 363 >gi|148238788|ref|YP_001224175.1| DNA replication and repair protein RecF [Synechococcus sp. WH 7803] gi|147847327|emb|CAK22878.1| DNA replication and repair protein RecF [Synechococcus sp. WH 7803] Length = 365 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 90/354 (25%), Positives = 160/354 (45%), Gaps = 20/354 (5%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + EFRN+ L+L +A + +G NG+GK+N+LE++ L R R + AD+ + Sbjct: 1 MQEFRNHCHLQLEIEAPRLLVIGSNGIGKSNLLESVELLGSLRSHRSSQDADLIHWDASR 60 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + V+ D ++LE R + + V+ R +D + LR Sbjct: 61 ALLRASCVD------DTEVELELRRRGGRQARRNGKVLQRQMDLIGP-LRCVGFSALDLH 113 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSI 186 + G RR +LDR+V ++P + + + RL+R R++ G +S S Sbjct: 114 LVRGEPALRRHWLDRVVLQLEPVYAELIGRYNRLLRQRSQFWRRGGGGTSVEHQALLDSF 173 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFCA 242 + QMA + +I+ R ++ L L + + + H +L L L+G+ + Sbjct: 174 DIQMALVCTRIHRRRRRALSRLEPLAAAWQSRLSKGHEQLELRYSPGSVLEGEEAEEPWR 233 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L E ++L R + +GPHR D I + + GS+G+Q+ +++ + LA Sbjct: 234 LAIE--QQLHRQRSEEERLGSCRVGPHR-DEIDMLLNGTVARRFGSSGQQRTLVLALKLA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 L+ G P+LLLD++ A LD ++ AL V D Q ++ T F+ Sbjct: 291 ELELVGELCGHPPLLLLDDVLAELDPQRQLALLEAVGDT-HQCLVSATHLDAFE 343 >gi|317968796|ref|ZP_07970186.1| recombination protein F [Synechococcus sp. CB0205] Length = 392 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 89/360 (24%), Positives = 168/360 (46%), Gaps = 18/360 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 I++ L + +FRNY +L L +A + +G NG GK+N+LEA+ L R R +S D+ Sbjct: 24 IRLHRLELRQFRNYGALSLTLEAPRLLVIGRNGEGKSNLLEAVELLGSLRSHRCSSDRDL 83 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G A +G + ++LE R + + N V+ EL LR Sbjct: 84 IQQGERQGL-IAADCDGGD-----RLELELRRQGGRQ-ARRNGKVLERQHELIGPLRCVG 136 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + G RR++LDR+V ++P + + + RL+R R++LL G+ + Sbjct: 137 FSALDLELVRGEPALRRQWLDRVVLQLEPVYAELLSRYGRLLRQRSQLLRRGFPQAQLEG 196 Query: 185 SIEA---QMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLTGFLDGKFD 237 ++A QMA +G +++ R+ + L L + + ++ L+G + Sbjct: 197 LLDAFDQQMALIGTRLHRRRLRALRRLEPLAQAWQHRLSDGRELLGLRYCPGSQLEG--E 254 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++ ++ A++L R + + +GPHR ++ ++ + +GS G+Q+ +++ Sbjct: 255 EAEAPWRDALAEQLLLQRPQELRLGQCSVGPHRDEVAMELGGQPAR-RYGSAGQQRTLVL 313 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA L+ G P+LLLD++ A LD ++ L V G Q ++ T F+ Sbjct: 314 ALKLAELELVHQLWGEPPLLLLDDVLAELDPGRQELLLEAVGQ-GHQCLVSATHLGAFNG 372 >gi|86606664|ref|YP_475427.1| recombination protein F [Synechococcus sp. JA-3-3Ab] gi|97181044|sp|Q2JQG8|RECF_SYNJA RecName: Full=DNA replication and repair protein recF gi|86555206|gb|ABD00164.1| DNA replication and repair protein RecF [Synechococcus sp. JA-3-3Ab] Length = 380 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 182/377 (48%), Gaps = 22/377 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++FL++ FRNY ++ F+A TI VG+N GKTN+LEA+ L+ R R ++ + Sbjct: 3 LRFLHLWHFRNYRDQKISFEAPKTILVGENAQGKTNLLEAVELLATLRSRRAGRDRELVQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ A VE + +++++L ++ RS+R +N +R + ++S +V Sbjct: 63 QGAEK-ARIAATVERLGVAHELAMELRSQGGRSLR---VNGQGLRRQSDFLG--QVSAVV 116 Query: 127 -PSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 S+D + G RR +LD ++ ++P + + + ++++ RN LL + + Sbjct: 117 FSSLDLELVRGAPEARRTWLDGVLLQLEPAYLGLVEQYRQILKQRNALLKQDPLAAGDKV 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235 + +AQ+A LG +I R ++ L L + Q + LSLT D + Sbjct: 177 PQMAFWDAQLATLGSRILRRRARLLQRLEPLAARWHQAISGGRETLSLTYRPQVPLPDPQ 236 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 D + ++ + + +L+GPHR ++ + D A+GS G+Q+ + Sbjct: 237 ADPKVV--QAQFLAAIRAKAAAEQALGTSLVGPHRDEVELG-IDGVAARAYGSQGQQRTL 293 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 ++ + LA LI G P+LLLD++ A LD ++N L + + Q +T T F Sbjct: 294 VLALKLAELELIEQVKGDPPLLLLDDVLAELDLHRQNQLLEAIQER-VQTLVTTTHLGSF 352 Query: 356 DSLN-ETAKFMRISNHQ 371 D+ + A+ +++ Q Sbjct: 353 DAAWLQGAQILQVHQGQ 369 >gi|33151998|ref|NP_873351.1| recombination protein F [Haemophilus ducreyi 35000HP] gi|51316363|sp|Q7VMW3|RECF_HAEDU RecName: Full=DNA replication and repair protein recF gi|33148220|gb|AAP95740.1| DNA replication and repair protein RecF [Haemophilus ducreyi 35000HP] Length = 360 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 78/353 (22%), Positives = 147/353 (41%), Gaps = 20/353 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I+ FRN ++ L VG NG GKT++LEAI +L GR F+ + + Sbjct: 6 LLINNFRNLQAIDLELSPDFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHHHA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 +F ++++ + + ++ D L+IN + + +L L + + P Sbjct: 66 ENFV-LHSKIDETQHQWSVGLQKNRAGD---TLLKINGEDGKKIADLAHLLPMQVITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR FLD +F + +RL++ RN L + S + + + Sbjct: 122 LTLLNGGPSYRRAFLDWGLFHQHLEFYSYWANLKRLLKQRNAALPQ-VKSYSELKAWDIE 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT---GFLDGKFDQSFCALKEE 246 + L + R E AL I E + P + + ++ G+ +G + Sbjct: 181 LVRLAHLVTKMRTEYAEALRPEI-EKTCRFFLPELPIRVSFHQGWENGA----------D 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L G + D T++GP ++D + S G+ K+++ + LA Sbjct: 230 YADVLRQGFERDQNIGYTMVGPQKADFRFKANGLPVEDV-LSRGQLKLLMCALRLAQGEY 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 + + L+D+ ++ LD KR L + + GSQ+F+T + ++ Sbjct: 289 LVTQKKRQCLFLIDDFASELDPMKRELLAHRLRETGSQVFVTAITAEQLNQMH 341 >gi|298481402|ref|ZP_06999594.1| RecF protein [Bacteroides sp. D22] gi|295086818|emb|CBK68341.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens XB1A] gi|298272266|gb|EFI13835.1| RecF protein [Bacteroides sp. D22] Length = 372 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 159/365 (43%), Gaps = 36/365 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS F ++S + Sbjct: 3 LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58 Query: 67 IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 FF E +G + I ++ R + + + R D + L + Sbjct: 59 QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFPVEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E M++ G + R + I E++ I S F+ D+ Sbjct: 176 LFLVWEEMMSQAGEIVFRKR-------EAFIREFIP------IFQSFYSFISQ--DKEAV 220 Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 L E +A+ L R+ D + +L G H+ +L + + I GS G+ K Sbjct: 221 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS 353 LV + LA + T P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRG 339 Query: 354 VFDSL 358 D + Sbjct: 340 HLDRI 344 >gi|289207190|ref|YP_003459256.1| DNA replication and repair protein RecF [Thioalkalivibrio sp. K90mix] gi|288942821|gb|ADC70520.1| DNA replication and repair protein RecF [Thioalkalivibrio sp. K90mix] Length = 357 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 83/327 (25%), Positives = 128/327 (39%), Gaps = 22/327 (6%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF--STFARVEGMEGLADIS 89 VG NG GKT++LEA L+ GR FR V R G + + G E +S Sbjct: 27 LVGPNGAGKTSVLEACHVLAAGRSFRTPQLRRVVRSGEKGLWIGGRVRDLHGGEHRLGVS 86 Query: 90 IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149 + R R ++ + V + H S D + +G ERRR LD F Sbjct: 87 WEGTRRSRLDGRWMEGHASVAEWLPVRVLH------AGSFD-LLTGSPEERRRLLDWGCF 139 Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209 +R + R RN L +G D E + + G I AR I+ Sbjct: 140 HSVRGYRWHWQQWRRSHEQRNAALRKG--DRRAAREFERPLVDAGENITQARQAYIDRWE 197 Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL--IG 267 E + F L +D+ +L E A R DS R +G Sbjct: 198 INTSEAARVFGFSQRLGDFQVHLRVGWDRDR-SLSEAIA------RSRDSDEERGFGQVG 250 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 P R+D+ + + + A S GEQK ++ + AR++ G AP++LLD++ + LD Sbjct: 251 PQRADIDLRFDGR--VAAEASRGEQKRLITALTGGQARMLEREAGRAPVVLLDDVVSELD 308 Query: 328 EDKRNALFRIVTDIGSQIFMTGTDKSV 354 L + + G Q+ +T + + Sbjct: 309 VAAVEGLMCGLLEFGWQVLVTTVEPHI 335 >gi|42525748|ref|NP_970846.1| DNA replication and repair protein RecF [Treponema denticola ATCC 35405] gi|41815759|gb|AAS10727.1| DNA replication and repair protein RecF [Treponema denticola ATCC 35405] Length = 360 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 85/345 (24%), Positives = 149/345 (43%), Gaps = 36/345 (10%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF- 73 FRN + + + VG NG GKTN LEA+ S G FR S A + F Sbjct: 11 FRNLENATVDISSPEVFLVGKNGQGKTNFLEALYVSSYGTSFRTRSLAQICTKDEKEFSI 70 Query: 74 -STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 + + + + I I+ + +D +Q N I+ EL IS +P + + Sbjct: 71 RALYKESDNISHTISIIIQDKKKD------IQKNFKKIKNSKEL-----IST-IPCI--L 116 Query: 133 FSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 F G +E +R F+D+ V + ++ + + ++ RN +L + +S Sbjct: 117 FHGDDIEFAVGTPSRKRFFIDQSVSLCNSDFIEVLVKYSKALKSRNVILEQK--KASLLD 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 SI+ A L + I N +++ EY + + + ++S ++ + S Sbjct: 175 SIDEIFASLALLIT-------NERKNIVEEYAKHFSLIYEEISGVSGVEMVYRPSVKVES 227 Query: 245 EEYAKKLF-DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 EE L + R+ D + R + GPHR D I DK S G+++++ + + + Sbjct: 228 EEDLLILLAEKRQNDLIDRTSSTGPHR-DRIHFIKDKKPFTERASNGQRRLISLVLRMIQ 286 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 A++ S TG PI L+D+I LD +KR ++ Q+F T Sbjct: 287 AKIYSEKTGRKPIFLMDDILLELDPEKRQKFMELLPPY-EQLFCT 330 >gi|295394844|ref|ZP_06805057.1| recombination protein F [Brevibacterium mcbrellneri ATCC 49030] gi|294972177|gb|EFG48039.1| recombination protein F [Brevibacterium mcbrellneri ATCC 49030] Length = 372 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 87/372 (23%), Positives = 160/372 (43%), Gaps = 26/372 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + FR+Y S + + + FV NG GKTN++EA++++S + R + + R Sbjct: 3 VSQLRLRNFRSYESFDVALEKGVSTFVAPNGWGKTNLVEALAYVSHLKSHRVSQDLPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G G LA + + + + S R +Q V R EL L Sbjct: 63 SGCDEATVAVLAHRGDRQLA-LEVTVRAKGANSAR-IQRQSVRPR---ELVGLLPCVVFA 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + G +RR FLD ++ PR D +R ++ RN LL E ++ + Sbjct: 118 PEDLGLVKGEPAQRRDFLDDLLVTQSPRFVAVRADSDRALKQRNALLKE--LKNNRDPGL 175 Query: 187 EAQM-------AELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFD 237 EA + AE ++ + R++++ L+ + ++ + S+T + D Sbjct: 176 EATLAIWDEAFAEAASQLVVGRMDLVKRLTQPLQNDFATLAQDANEDRKSVTATYTSRID 235 Query: 238 QSFCALKEEYAKKL---FDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAH-GSTGEQ 292 S + + + R++ + R TL+GP R DL ++ ++ H S GE Sbjct: 236 YSDIRNTTDAKNAIIQALESRRVPEIDRGLTLVGPQRDDLELEIG--GVSAKHYASHGES 293 Query: 293 KVVLVGIFLAHARLIS-NTTGF--APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 V + + LA ++ + +G + +L+LD++ A LDE +RN L ++ + Sbjct: 294 WSVALALKLAGWHVLQEDNSGPDDSAVLVLDDVFAELDEGRRNRLAGMLEPAQQVLITAA 353 Query: 350 TDKSVFDSLNET 361 V +SL+ T Sbjct: 354 VPGDVPESLHST 365 >gi|304382224|ref|ZP_07364731.1| recombination protein F [Prevotella marshii DSM 16973] gi|304336581|gb|EFM02810.1| recombination protein F [Prevotella marshii DSM 16973] Length = 371 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 84/358 (23%), Positives = 150/358 (41%), Gaps = 15/358 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 ++I F+N L + F+GDNG GKTN L+A+ +LS R + + Sbjct: 6 ISIINFKNIREAVLELSPKMNCFIGDNGEGKTNFLDAVYYLSFCRSASNPIDSQII-CHE 64 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 FF R + EG ++S+ + + + + N + + E + + + PS Sbjct: 65 QDFFMLEGRYQTDEG-EEVSVACSMKRG-TKKHFKRNRKEYKRLSEHIGFIPLIQVSPSD 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWCSSIEA 188 + G S ERRR +D ++ D + + + + ++ RN LL + D + E Sbjct: 123 ITLIEGSSEERRRLMDIVISQYDRTYLETLTRYNKALQQRNTLLKMDDEPDETLLDIWET 182 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 +MA+ G I R + L + Q+ + ++SL + + ++ + A Sbjct: 183 EMADAGELIFRRRDAFVQELMPTFQNFYQRISGDQEQVSLHYISHCQRGRLLDVIRRDRA 242 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 K D +L G HR DL + + GS G+ K ++ + LA + Sbjct: 243 K--------DRAVGHSLHGIHRDDLEMMLGGYPMK-REGSQGQNKTFIISLKLAQFDFLR 293 Query: 309 NT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETAKF 364 T G P+LLLD+I LD + + +V + QIF+T T++ D + F Sbjct: 294 RTGNGTTPLLLLDDIFDKLDARRVEQIVHLVAGNHFGQIFITDTNRDHLDRILHNGDF 351 >gi|256831258|ref|YP_003159985.1| DNA replication and repair protein RecF [Jonesia denitrificans DSM 20603] gi|256684789|gb|ACV07682.1| DNA replication and repair protein RecF [Jonesia denitrificans DSM 20603] Length = 415 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 93/396 (23%), Positives = 159/396 (40%), Gaps = 59/396 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ ++R+Y + + F + VG NG GKTNI+EAI +L+ R A + R Sbjct: 3 VSHLSLVDYRSYEHVDIEFAPGVNVLVGHNGQGKTNIVEAIGYLATLASHRVAHDTALIR 62 Query: 67 IGSPSFF----------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 +G+ + +E + G A+ + + R+ L I V+ ++L Sbjct: 63 VGAQRALIRSRVVRGDRAQVVELELLHGKANKARVNRGQPGRASTVLGIVKTVVFAPEDL 122 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE- 175 + G RRR+LD + + PR R + D+++++R R+ LL + Sbjct: 123 V--------------LVKGDPDARRRYLDDLTVLMIPRMRSVLADYDKVVRQRSALLKQL 168 Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM---EYV---QKENFPHI 224 + + + + +M LG +I R ++ AL+ + E V Q E Sbjct: 169 MRGGASHASDATLAVWDERMVALGSQIIGVRQRLVAALAPHLASGYETVSSGQSEAKMRY 228 Query: 225 KLSLTGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 + SL FLD S + YA+ L R+ + ++GPHR D + + Sbjct: 229 RPSLESFLDEPMPAVMSVEEISVIYAEVLARARRRELERGVCIVGPHRDD-VEQTLNNLP 287 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLIS-----NTTGFA---------------PILLLDEI 322 + S GE + + LA RL++ N A PIL+LD++ Sbjct: 288 VKGYASHGESWSYALAMRLASYRLMTEGPDENDPASADLQDMWWTDSQEDTEPILILDDV 347 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 A LD +R L I I + V D L Sbjct: 348 FAELDVRRRRQLADIAAQARQVIITAAVAQDVPDQL 383 >gi|256370827|ref|YP_003108651.1| DNA replication and repair protein RecF [Acidimicrobium ferrooxidans DSM 10331] gi|256007411|gb|ACU52978.1| DNA replication and repair protein RecF [Acidimicrobium ferrooxidans DSM 10331] Length = 346 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 85/323 (26%), Positives = 140/323 (43%), Gaps = 26/323 (8%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 VG NG GKT++LE++S + GR FR + + R+G A VE LA ++ Sbjct: 26 VVGSNGHGKTSLLESVSVVLAGRSFRTHDRSALVRVGHDEAV-VVADVE--RELAP-PVR 81 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 + R DR R + V ++ L + P +I SG +RRRFLD V + Sbjct: 82 VGRRVDREGR---LETRVDGQREQRGPSLPVVSFHPDDVQIASGGPEQRRRFLDECVVGL 138 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 D R+ ER++R R L D S +E ++A V++ R ++ Sbjct: 139 DRGAAIRLRQAERVLRQRTEALRAPVLDEVTLSILEERLARASVEVAELRARAAEVIA-- 196 Query: 212 IMEYVQKENFPHIKLSLTGFL--DGKFDQSFCALKEEYA--KKLFDGRKMDSMSRRTLIG 267 PH + + L G+ ++ +E ++L R D T +G Sbjct: 197 ----------PHARAVIDEMLMSAGRVVVTYRGAGDEATLLEQLRARRGDDRRRGVTSVG 246 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 HR D+ + D GS G+ + V+V + +A AR + T P+L+LD++ A LD Sbjct: 247 FHRDDVEI-LLDGEPIRRMGSQGQVRTVVVALKVALARAMEAVTKEPPVLVLDDLLAELD 305 Query: 328 EDKRNALFRIVTDIGSQIFMTGT 350 ++ ++ G Q F++ T Sbjct: 306 AERARRAVAMME--GMQAFISHT 326 >gi|317123181|ref|YP_004097293.1| DNA replication and repair protein RecF [Intrasporangium calvum DSM 43043] gi|315587269|gb|ADU46566.1| DNA replication and repair protein RecF [Intrasporangium calvum DSM 43043] Length = 424 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 4/169 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + F T +G NG GKTN++EAI +L+ R A+ + Sbjct: 1 MHVRHLTLKDFRSYPGAEIAFSPGVTTLIGLNGQGKTNLVEAIGYLATLGSHRVAADQPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ R M G + I+LE R+ R V R D L LR Sbjct: 61 VRFGA---SQAIVRGAVMSGGHETMIELEITPGRANRARLGRAPVSRPRDVLGT-LRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 P + G ERRRFLD ++ PR D++++++ RN LL Sbjct: 117 FAPEDLALVKGDPSERRRFLDDLLVQRQPRWAGVRADYDKIVKQRNALL 165 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 L+GPHR D+++ + + S GE +G+ LA RL++ G P+L+LD++ A Sbjct: 299 LVGPHRDDVVLTLGNLPAK-GYASHGESWSFALGLKLAAYRLLARDLGDDPVLVLDDVFA 357 Query: 325 HLDEDKRNALFRIVTDIGSQIFMT 348 LD +R L ++ D Q+ +T Sbjct: 358 ELDSGRRERLAELIGDC-EQVIIT 380 >gi|154508242|ref|ZP_02043884.1| hypothetical protein ACTODO_00736 [Actinomyces odontolyticus ATCC 17982] gi|153797876|gb|EDN80296.1| hypothetical protein ACTODO_00736 [Actinomyces odontolyticus ATCC 17982] Length = 398 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 97/400 (24%), Positives = 161/400 (40%), Gaps = 37/400 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FR++ + T+ VG NG GKTN++EA+++LS R + + Sbjct: 1 MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL 60 Query: 65 TRI------GSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 RI +P ARV G E + I+LE ++ R +IN ++ E+ Sbjct: 61 VRIPIDEAEAAPGGAVIRARVVTFGREQV----IELEIVRGKANRA-RINRAQVK-PREI 114 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 +R P + G RR FLD + + P H DF+R+ R R L+ Sbjct: 115 LGIVRTVVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAA 174 Query: 177 YF-----DSSWCSSIE---AQMAELGVKINIARVEMINALSSLIM-EYVQKENFP-HIKL 226 S S++E Q A L +I R +++ L Y + P H+ L Sbjct: 175 QASLRRGQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHL 234 Query: 227 SLTGFLD---GKFDQSFC--------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 + +D G + A E L R+ ++ L G HR DL + Sbjct: 235 AFDASVDRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLAGAHRDDLAL 294 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 + + S GE V + + L L+S+ G PIL+LD++ A LD +R L Sbjct: 295 SLGAMPVK-GYASHGESWSVALALRLGAFELLSD-DGDTPILILDDVFAELDSSRREGLA 352 Query: 336 RIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 + + I + SL+ A +R+ + I Sbjct: 353 ALASKAEQIIVTCAVAGDLPASLDHHALHVRLDPERGTVI 392 >gi|313159177|gb|EFR58550.1| DNA replication and repair protein RecF [Alistipes sp. HGB5] Length = 448 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 90/352 (25%), Positives = 151/352 (42%), Gaps = 33/352 (9%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI LN F+N L VGDNG GKTN+++A+ +LS + + Sbjct: 5 KISLLN---FKNIEQAELALCRGVNCLVGDNGAGKTNVIDAVYYLSMCKSSLPMTDGQSI 61 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R G+ F + + +I + + L+ N + + L+ H+ + Sbjct: 62 RHGADFFLAEGQYLTDGGKSENIVCSFSRKGGK---VLKRNG---KEYERLSDHVGLVPA 115 Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 V P+ + S S ERRR+L+ + +D + ++ + ++ RNRLL + D + Sbjct: 116 VIVSPADSALISDASDERRRYLNAFISQLDRSYLTAVMRYNAVLAERNRLL-KNMPDETM 174 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+ E G +I+ R E L + EY + L G +Q Sbjct: 175 LQIYDMQLVEQGERIHARRREFAERLQPVAAEYYR-------------ILSGDREQVELH 221 Query: 243 LKEE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 K E + + L R+ D + T G HR DL++ + +GS G+QK L+ Sbjct: 222 YKSELNDRPFGEILLAARQKDLANEFTTSGIHRDDLVLRIGGYPLR-KYGSQGQQKSFLI 280 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMT 348 + LA +++ G PILLLD++ LD + L R+V+ D QI +T Sbjct: 281 ALKLAQYTIVAQEKGEKPILLLDDLFDKLDAGRVEQLIRLVSEDSFGQIVIT 332 >gi|294647035|ref|ZP_06724648.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CC 2a] gi|294809889|ref|ZP_06768565.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens SD CC 1b] gi|292637612|gb|EFF56017.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CC 2a] gi|294442918|gb|EFG11709.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens SD CC 1b] Length = 375 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 159/365 (43%), Gaps = 36/365 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS F ++S + Sbjct: 6 LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 61 Query: 67 IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 FF E +G + I ++ R + + + R D + L + Sbjct: 62 QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 118 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 119 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALVQRNTLLKSEFPVEEE 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E M++ G + R + I E++ I S F+ D+ Sbjct: 179 LFLVWEEMMSQAGEIVFRKR-------EAFIREFIP------IFQSFYSFISQ--DKEAV 223 Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 L E +A+ L R+ D + +L G H+ +L + + I GS G+ K Sbjct: 224 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 282 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS 353 LV + LA + T P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 283 YLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRG 342 Query: 354 VFDSL 358 D + Sbjct: 343 HLDRI 347 >gi|237715558|ref|ZP_04546039.1| DNA replication and repair protein RecF [Bacteroides sp. D1] gi|262408567|ref|ZP_06085113.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229444267|gb|EEO50058.1| DNA replication and repair protein RecF [Bacteroides sp. D1] gi|262353432|gb|EEZ02526.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 372 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 159/365 (43%), Gaps = 36/365 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS F ++S + Sbjct: 3 LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58 Query: 67 IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 FF E +G + I ++ R + + + R D + L + Sbjct: 59 QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL +E + Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALVQRNTLLKSEFPVEEE 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E M++ G + R + I E++ I S F+ D+ Sbjct: 176 LFLVWEEMMSQAGEIVFRKR-------EAFIREFIP------IFQSFYSFISQ--DKEAV 220 Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 L E +A+ L R+ D + +L G H+ +L + + I GS G+ K Sbjct: 221 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS 353 LV + LA + T P+LLLD+I LD + + ++V D QIF+T T++ Sbjct: 280 YLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRG 339 Query: 354 VFDSL 358 D + Sbjct: 340 HLDRI 344 >gi|218295958|ref|ZP_03496738.1| DNA replication and repair protein RecF [Thermus aquaticus Y51MC23] gi|218243696|gb|EED10224.1| DNA replication and repair protein RecF [Thermus aquaticus Y51MC23] Length = 343 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 132/302 (43%), Gaps = 33/302 (10%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS-- 89 VG N GKT +L AI L+ G G R + D+ R G + A VE G+ + Sbjct: 28 LVGGNAQGKTGLLLAIH-LALG-GEVRGTLEDLIRFGEKEAWLQ-AEVETELGVFRVEQR 84 Query: 90 IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149 I LE R+ R L V +R + EL + I +P + G ERR FLD ++ Sbjct: 85 IGLEGREIR----LNERPVGLRALYELPGSVLI---LPEDVEVVLGPKEERRGFLDHLLA 137 Query: 150 AIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 R+ + +E+ +R RN LL T G S W + ++A G +I + R + Sbjct: 138 RFSRRYAALLSAYEKALRQRNALLKTGGNSLSVW----DQELARYGEEITLLRRRFLKRF 193 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 L Q + L L Q+ A +EE + + +TL+GP Sbjct: 194 LPLFQSVHQTLAPGEVGLRLEETAPEGLLQALAARREE-----------ERLRGQTLVGP 242 Query: 269 HRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 HR DL+ + AH S GE K + + + LA RL+S G P+LL+DE S L Sbjct: 243 HRDDLVFLLGGRP---AHRFASRGEAKALALALRLAEHRLLSEHHGEPPLLLVDEWSEEL 299 Query: 327 DE 328 DE Sbjct: 300 DE 301 >gi|325475139|gb|EGC78324.1| DNA replication and repair protein RecF [Treponema denticola F0402] Length = 360 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 84/345 (24%), Positives = 149/345 (43%), Gaps = 36/345 (10%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF- 73 FRN + + + VG NG GKTN LEA+ S G FR S A + F Sbjct: 11 FRNLENATVDISSPEVFLVGKNGQGKTNFLEALYVSSYGTSFRTRSLAQICTKDEKEFSI 70 Query: 74 -STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 + + + + I I+ + +D +Q N I+ EL IS +P + + Sbjct: 71 RALYKESDNISHTISIIIQDKKKD------IQKNFKKIKNSKEL-----IST-IPCI--L 116 Query: 133 FSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 F G +E +R F+D+ V + ++ + + ++ RN +L + +S Sbjct: 117 FHGDDIEFAVGTPSRKRFFIDQSVSLCNSDFIEALVKYSKALKSRNVILEQK--KASLLD 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 SI+ + L + I N +++ EY + + + ++S ++ + S Sbjct: 175 SIDEIFSSLALLIT-------NERKNIVEEYAKHFSLIYEEISGVSGVEMVYRPSIKVES 227 Query: 245 EEYAKKLF-DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 EE L + R+ D + R + GPHR D I DK S G+++++ + + + Sbjct: 228 EEDLLILLAEKRQNDLIDRTSSTGPHR-DRIHFIKDKKPFTERASNGQRRLISLVLRMIQ 286 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 A++ S TG PI L+D+I LD +KR ++ Q+F T Sbjct: 287 AKIYSEKTGRKPIFLMDDILLELDPEKRQKFMELLPPY-EQLFCT 330 >gi|320095110|ref|ZP_08026819.1| recombination protein F [Actinomyces sp. oral taxon 178 str. F0338] gi|319977977|gb|EFW09611.1| recombination protein F [Actinomyces sp. oral taxon 178 str. F0338] Length = 395 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 89/387 (22%), Positives = 159/387 (41%), Gaps = 42/387 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FR++ + F T+ VG NG GKTN++EAI++LS R + + + Sbjct: 1 MRVSHLALDDFRSWKRGLVEFPPGATVLVGANGQGKTNLVEAIAYLSTFSSHRVGAESAL 60 Query: 65 TRIG------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 RI +P R+ EG + ++LE ++ R +IN +R L Sbjct: 61 VRIPADPASTAPGGAVIRVRLVQAEGREQV-VELEIVRGKANRA-RINRTQVRPRAILGL 118 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 +R P + G RR F+D +V P DFER+ R R L+ Sbjct: 119 -VRTVVFAPEDLALVRGEPAARRAFMDDLVIQRSPVMAGVKADFERVARQRAALMKSAQA 177 Query: 179 DSSWCSSI--------EAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLT 229 + +S + Q A L +++ AR + + +L+ Y + + P +L L+ Sbjct: 178 SARRGASPDLSTLDVWDQQFAHLSARLSAARAQAVTSLAGPASRAYDEVSDSPR-RLVLS 236 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT-----------------LIGPHRSD 272 + D++ ++ A D + RRT L+G HR + Sbjct: 237 --FEASVDRAIGTDPDDPASA--DPCDAPAQERRTLAALAAHRDKEVTRGVNLVGAHRDE 292 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 L + + + S GE V + + L L+S G P+L+LD++ A LD +R Sbjct: 293 LSLVLGGMPVK-GYASHGESWSVALALRLGAFELLSE-DGDTPVLILDDVFAELDTARRE 350 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L + + I ++ + L+ Sbjct: 351 GLAAMASRAEQAIITCAVEEDIPAGLD 377 >gi|212715153|ref|ZP_03323281.1| hypothetical protein BIFCAT_00039 [Bifidobacterium catenulatum DSM 16992] gi|212661834|gb|EEB22409.1| hypothetical protein BIFCAT_00039 [Bifidobacterium catenulatum DSM 16992] Length = 400 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 143/357 (40%), Gaps = 49/357 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + +R++ L F+ I G NG+GKTNI+EA+ LS G R +S + Sbjct: 3 ISRLALDHYRSWEHCVLDFEPGINILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPLIE 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G S + A VE E + R R +R D + + +S+ Sbjct: 63 KGCTS-ATIRANVEDDETQHTYEATIVARGANRARIDGGKSQYMR--DLIGRTPSVSF-T 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------GY 177 P R+ +G RR F+++ + P + + + F + + R LL + Y Sbjct: 119 PEDQRLVAGDPATRRNFINQAASLLLPHYAQLLQQFTHVAKQRTALLKQLGDGTNLDPQY 178 Query: 178 FDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + S +E Q +LG+++ R ++I L E F I SL G Sbjct: 179 SQQTVLSGLEIWTGQFIDLGMRLTRERNDVIARLG---------EPFARIYASLAG---- 225 Query: 235 KFDQSFCALKEEYA---KKLFDGRKMDSMSR-------------RTLIGPHRSDLIVDYC 278 D AL E + LFD + +SR + LIGPHR DL + Sbjct: 226 --DDERAALSYEPSFDEVMLFDDPSAE-ISRHFQRIYPGEVARGQNLIGPHRDDLTLLLN 282 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 D S GE + + + +A +S PI++LD++ A LDE +R + Sbjct: 283 DMPAR-EFASNGEMWTMALALKMALYEAVSAQFESKPIVILDDVFAQLDESRRGQIL 338 >gi|46911667|emb|CAG18465.1| Putative RecF [Photobacterium profundum SS9] Length = 320 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 74/329 (22%), Positives = 149/329 (45%), Gaps = 18/329 (5%) Query: 44 LEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 +EAI +L GR FR + V R F RV L ++ + + + D + + Sbjct: 1 MEAIHYLGHGRSFRSHLTSRVIRHEQQELF-IHGRVLTNNQL-ELPLGINKKRDGTTE-V 57 Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +++ + + +L + L + + P + G RR F+D VF I+P+ + Sbjct: 58 KVSGESGQKLSQLAQVLPLQLITPEGFELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIK 117 Query: 164 RLMRGRNRLL--TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 RL + RN LL Y + S+ + ++A L +I++ R E + A+ E Q Sbjct: 118 RLTKQRNALLKTARSYRELSYW---DQELAVLAEEISVWRDEYLIAVKQKAAEICQG-FL 173 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 P ++ L+ + + + + L K+ F+ D T+ GPH++DL + Sbjct: 174 PEYEIQLSYYRGWEKETPYAEL----LKRNFE---RDCQLGYTVNGPHKADLRMKVSGTP 226 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S G+ K+++ + LA ++ TG I L+D+ ++ LD +R L + + + Sbjct: 227 VEDVL-SRGQLKLMVCALRLAQGLHLTEATGKQCIYLIDDFASELDSHRRALLAQRLKET 285 Query: 342 GSQIFMTG-TDKSVFDSLNETAKFMRISN 369 +Q+F++ +++ + D +E K + + Sbjct: 286 NAQVFISAISNEQIADMHDENGKMFHVEH 314 >gi|109896335|ref|YP_659590.1| DNA replication and repair protein RecF [Pseudoalteromonas atlantica T6c] gi|123361468|sp|Q15ZZ5|RECF_PSEA6 RecName: Full=DNA replication and repair protein recF gi|109698616|gb|ABG38536.1| DNA replication and repair protein RecF [Pseudoalteromonas atlantica T6c] Length = 363 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 46/362 (12%) Query: 10 LNISEFRNYASLRLV-FDAQHTI--FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 L+ + RN +L+ V F H + +G NG GK++ILEAI +L GR FR + + +V + Sbjct: 3 LDSVQIRNLRNLQHVTFKPSHGVNFILGINGSGKSSILEAIHYLGFGRSFRTSKHKNVIQ 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S F+ F + + D SV IN + V +L L + Sbjct: 63 NEQES-FTVFCECLEDSTTQRLGLSRSINDTVSV---SINGIKGNKVSDLVSLLPVQIFT 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS-- 181 P I G RR+++D +F ++ + RL++ N L + GY + Sbjct: 119 PQSSDILLGAPKLRRKYIDWCLFHVEHSFLTCSNAYSRLLKHNNALCRKQQVGYANPQRV 178 Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 W + +EL E NA+ + ++ P I +L FL F Sbjct: 179 YWTDLLAQYGSEL--------TEFRNAMMTRLI--------PLITSNLAQFLP-----EF 217 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTL----------IGPHRSDLIVDYCDKAITIAHGSTG 290 C ++ Y + G +++ ++ +GPH++D+ K S G Sbjct: 218 C-VEISYYRGWEKGLELNEALTKSADRDYKNGYISVGPHKADVRFKISGKPAQEVL-SRG 275 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + ++++ + LA + + + T I LLD++ A LD KR + + +Q+F+T Sbjct: 276 QLRMLVAALQLATTQCLMSYTQKTCIFLLDDVGAELDAAKREVFIDRLLESNTQLFVTAI 335 Query: 351 DK 352 ++ Sbjct: 336 EE 337 >gi|169830222|ref|YP_001716204.1| DNA replication and repair protein RecF [Candidatus Desulforudis audaxviator MP104C] gi|226737788|sp|B1I1H6|RECF_DESAP RecName: Full=DNA replication and repair protein recF gi|169637066|gb|ACA58572.1| DNA replication and repair protein RecF [Candidatus Desulforudis audaxviator MP104C] Length = 360 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 87/358 (24%), Positives = 146/358 (40%), Gaps = 17/358 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + FRN+ L + A I G N GKTN +EA+ F G FR ++ Sbjct: 1 MRLTRIKAGNFRNFQHLDVQPAAGLNIVRGRNAQGKTNFIEAVFFALRGHSFRSLRDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S F A +EG +G + +L + V + V + EL L Sbjct: 61 VTWGQESAFVE-AELEGKDGRTRVRAELNPAGKKIVWA---GEPVGKA--ELAVRLGTVL 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSW 182 P + G ERRRFLD + P + + + R + RN LL G S Sbjct: 115 FTPDDLSLIKGGPRERRRFLDLELGIFVPGYLTALQLYRRALEQRNHLLRMGGGRRYSEL 174 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFLDGKFDQS 239 ++ + G+ + R+E++ + L + E S G +G Sbjct: 175 LDLWTDEVCKYGMMLLSGRLEILKEFAPLACRLFGAWAGEELAVRYRSSVGLSNGVRTPG 234 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L+E A R+ + + +T GPH DL K S G+Q+ V++ + Sbjct: 235 AGDLRETLAAV----RQDEIRAGQTQAGPHLDDLAFMVNGKE-GRPFASQGQQRSVVLAL 289 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 LA L TG AP++LLD++ D ++R+ + + + Q+F+T ++ + S Sbjct: 290 KLAQVFLWKRHTGEAPVVLLDDLLFEFDRERRDKVLETLQN-DVQVFITTGERVLSGS 346 >gi|225352382|ref|ZP_03743405.1| hypothetical protein BIFPSEUDO_03999 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156889|gb|EEG70258.1| hypothetical protein BIFPSEUDO_03999 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 419 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 145/354 (40%), Gaps = 43/354 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + +R++ L F I G NG+GKTNI+EAI LS G R +S + Sbjct: 3 ISRLALDHYRSWEHCVLDFKPGINILQGANGLGKTNIVEAIEVLSTGSSHRASSSLPLIE 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G S + A VE E + R R +R D + + +S+ Sbjct: 63 KGCTS-ATIRANVEDGETQHTYEATIVARGANRARIDGGKSQYMR--DLIGRTPSVSF-T 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------GY 177 P R+ +G RR F+++ + P + + + F + + R LL + Y Sbjct: 119 PEDQRLVAGDPATRRNFINQAASLLLPHYAQTLQQFTHVAKQRTALLKQLGDGTNLDPQY 178 Query: 178 FDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---- 230 + S +E Q +LG+++ R +I+ L +E F I SL G Sbjct: 179 GQQAVLSGLEIWTGQFIDLGMQLTRDRNNVISRL---------EEPFARIYASLAGDDER 229 Query: 231 ---FLDGKFDQSF-----CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KA 281 + FD+ A + ++++ G + + LIGPHR DL + D A Sbjct: 230 AALAYEPSFDEVMLFDDPAAEISRHFQRIYPG---EVARGQNLIGPHRDDLTLLLNDMNA 286 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 A S GE + + + +A +S PI++LD++ A LDE +R + Sbjct: 287 REFA--SNGEMWTMALALKMALYEAVSAHFESKPIVILDDVFAQLDEARRGQIL 338 >gi|183602670|ref|ZP_02964034.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis HN019] gi|219682502|ref|YP_002468885.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis AD011] gi|241190069|ref|YP_002967463.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195475|ref|YP_002969030.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218088|gb|EDT88735.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis HN019] gi|219620152|gb|ACL28309.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis AD011] gi|240248461|gb|ACS45401.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250029|gb|ACS46968.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177772|gb|ADC85018.1| RecF [Bifidobacterium animalis subsp. lactis BB-12] gi|295793056|gb|ADG32591.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis V9] Length = 475 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 86/372 (23%), Positives = 145/372 (38%), Gaps = 59/372 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 I + L + FR++ + L F I G NG+GKTNI+EA+ LS G R ++ + Sbjct: 2 ITVSRLALDHFRSWTNCVLDFKPGVNILEGPNGLGKTNIVEALEVLSTGSSHRASTSQPL 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-------------------RCLQI 105 G P+ + A +E + D ET DDR+ L + Sbjct: 62 VEQGFPA-AAIRANIEELS--EDFENNTETIDDRTTTFELTIRVRGANRARVDGGPSLYM 118 Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 D+V RV + P R+ G RR F+D+ + + + F + Sbjct: 119 RDIVGRVP--------LVAFTPDDQRLVWGDPAVRRSFIDQAASVLVRGYTDLLQRFTHI 170 Query: 166 MRGRNRLL-----TEGYFDSSWCSSIE--------AQMAELGVKINIARVEMINALSSLI 212 + R LL EG S + AQ E G+++ R+ +I L+ Sbjct: 171 AKQRAALLKQIGAQEGVSVSEEARQMRMNGLEVWTAQFIETGLELTRQRMAVIGMLNEYF 230 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR--------- 263 VQ+ + + T + FD+ + E ++ R ++S Sbjct: 231 GTIVQE--LSDVDQTATLVYEPSFDELYLTQGAEAGEQGGPERVKAAISEHFQRIYTGEV 288 Query: 264 ----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 LIGP R D+ ++ + + S GE + + + +A RL+ G PI++L Sbjct: 289 ARGVNLIGPQRDDVSIE-LNGMPAREYSSNGESWTLALALKMALYRLLERKAGERPIVVL 347 Query: 320 DEISAHLDEDKR 331 D++ A LD +R Sbjct: 348 DDVFAQLDPSRR 359 >gi|145630087|ref|ZP_01785869.1| recombination protein F [Haemophilus influenzae R3021] gi|144984368|gb|EDJ91791.1| recombination protein F [Haemophilus influenzae R3021] Length = 299 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 13/269 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + V+ IN + +L L + Sbjct: 61 ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E ALS I + Q P ++++++ F Q + Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALSPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 +Y + L + D T GP ++D Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF 256 >gi|317482361|ref|ZP_07941381.1| DNA replication and repair protein RecF [Bifidobacterium sp. 12_1_47BFAA] gi|316916241|gb|EFV37643.1| DNA replication and repair protein RecF [Bifidobacterium sp. 12_1_47BFAA] Length = 412 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 79/356 (22%), Positives = 148/356 (41%), Gaps = 44/356 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRASSTLPL 60 Query: 65 TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 G + + + A G + SI R R + + +R D + K + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S+ P R+ SG RR +++ ++P + + + F R+ + R LL + +++ Sbjct: 117 SF-TPEDQRLVSGDPGARRVMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANN 175 Query: 183 CSSIEA----------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 ++A Q E GV + R +I L+ E F I L G Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLA---------EPFAAIYADLAGAG 226 Query: 233 DG-------------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 + FD + E + ++++ G ++ LIGP R D+ +D Sbjct: 227 EQVTLTYAPSFDEVLMFDDPHPQISEHF-QRIYPGEVARGVN---LIGPQRDDMNLDLAG 282 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 S GE + + + +A ++ + G PI++LD++ A LD+ +R + Sbjct: 283 IPAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQIL 337 >gi|283782560|ref|YP_003373314.1| DNA replication and repair protein RecF [Gardnerella vaginalis 409-05] gi|283442151|gb|ADB14617.1| DNA replication and repair protein RecF [Gardnerella vaginalis 409-05] Length = 433 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 165/375 (44%), Gaps = 49/375 (13%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY---------ADVT 65 FR++ + F+ + G+NG+GKTNI+EA+ G R +S + Sbjct: 11 FRSWNHIICDFNPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPLIKKGYEKSII 70 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL----------QINDVVIRVVDE 115 RI + + + + E GL++I+ LE+ +++ + IN V + Sbjct: 71 RINTINNDINYKKDETNTGLSNIA-SLESNLNQTTYEIDLYVKGSNRAHINSGKALYVKD 129 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + L I P + G RR F+D+ + P + + + +F+ + + R LL Sbjct: 130 IVGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLIPNYVQLLQEFKHISKQRAALLKN 189 Query: 176 ----GYFDSSWC-SSIE---AQMAELGVKINIARVEMINALS----SLIMEYVQKENFPH 223 Y + + S +E + E G+ + AR E + ++ ++I + +EN Sbjct: 190 IRDFSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVQIINKYFKNIIKSFTNEENTEI 249 Query: 224 IKL-SLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKMDSMSRR-TLIGPHRSDLI 274 I + S L + K D++ E E+ ++++DG ++R LIGPHR D Sbjct: 250 IYVPSFEEVLFEKKSDENIEDKNELFSKISEHFQRIYDGE----LARGCNLIGPHRDD-- 303 Query: 275 VDYCDKAITIAH-GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 +D+ I+ S GE + + +A + + PI++LD++ A LDE++R Sbjct: 304 IDFAINNISAKDFASNGESWTIAIASKMALCKALEEKNNDKPIVILDDVFAQLDENRRIR 363 Query: 334 LFRIVTDIGSQIFMT 348 + + G Q+F+T Sbjct: 364 ILNFALNQG-QVFIT 377 >gi|288916708|ref|ZP_06411083.1| DNA replication and repair protein RecF [Frankia sp. EUN1f] gi|288351963|gb|EFC86165.1| DNA replication and repair protein RecF [Frankia sp. EUN1f] Length = 433 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 6/170 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y L LV + T FVG NG GKTN++EAI F++ R A+ A + Sbjct: 1 MHLTHLSLTDFRSYPRLDLVLEPGVTTFVGSNGQGKTNLIEAIGFVATLGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ V G L +I I + + +R +++N + ++ L Sbjct: 61 VREGTTQAVVRSRIVRGDRAALVEIQI-VPGKANR----VRLNRAPVPRALDVAGLLATV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 P + G ERRRFLD ++ A PR D+ER+++ R+ LL Sbjct: 116 LFAPEDLALVKGDPAERRRFLDELLVARSPRMAAVQADYERVLKQRSALL 165 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 7/110 (6%) Query: 243 LKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L+ E A+ + G R + TL+GPHR DL++ + + S GE + + Sbjct: 300 LRAELAEAILTGLAAVRSQEIERGVTLVGPHRDDLLLSVKGRPAR-GYASHGESWSLALA 358 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + LA L+ P+LLLD++ A LD +R L +V Q+ +T Sbjct: 359 LRLASYDLL-RADDREPVLLLDDVFAELDVRRRARLAALVAP-AEQVLVT 406 >gi|298253029|ref|ZP_06976821.1| RecF pathway recombinational DNA repair ATPase [Gardnerella vaginalis 5-1] gi|297532424|gb|EFH71310.1| RecF pathway recombinational DNA repair ATPase [Gardnerella vaginalis 5-1] Length = 433 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 165/375 (44%), Gaps = 49/375 (13%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY---------ADVT 65 FR++ + F+ + G+NG+GKTNI+EA+ G R +S + Sbjct: 11 FRSWNHIICDFNPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPLIKKGYEKSII 70 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL----------QINDVVIRVVDE 115 RI + + + + E GL++I+ LE+ +++ + IN V + Sbjct: 71 RINTINNDINYKKDETNTGLSNIA-SLESNLNQTTYEIDLYVKGSNRAHINSGKALYVKD 129 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + L I P + G RR F+D+ + P + + + +F+ + + R LL Sbjct: 130 IVGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLIPNYVQLLQEFKHISKQRAALLKN 189 Query: 176 ----GYFDSSWC-SSIE---AQMAELGVKINIARVEMINALS----SLIMEYVQKENFPH 223 Y + + S +E + E G+ + AR E + ++ ++I + +EN Sbjct: 190 IRDFSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVKIINKYFKNIIKSFTNEENTEI 249 Query: 224 IKL-SLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKMDSMSRR-TLIGPHRSDLI 274 I + S L + K D++ E E+ ++++DG ++R LIGPHR D Sbjct: 250 IYVPSFEEVLFEKKSDENIEDKNELFSKISEHFQRIYDGE----LARGCNLIGPHRDD-- 303 Query: 275 VDYCDKAITIAH-GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 +D+ I+ S GE + + +A + + PI++LD++ A LDE++R Sbjct: 304 IDFAINNISAKDFASNGESWTIAIASKMALCKALEEKNNDKPIVILDDVFAQLDENRRIR 363 Query: 334 LFRIVTDIGSQIFMT 348 + + G Q+F+T Sbjct: 364 ILNFALNQG-QVFIT 377 >gi|291532568|emb|CBL05681.1| hypothetical protein MHY_05980 [Megamonas hypermegale ART12/1] Length = 194 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 7/189 (3%) Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFDQS 239 +W I A+ A V+ + +E ++ L+ I E QK +I+ ++ + + + S Sbjct: 4 TWDEQI-AKTAAFIVEKRLRSIEKLSKLAQKIHYEISQKMEILNIRYNIHNYKNEALN-S 61 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVG 298 F L Y + L R D T IGPHR D +D+ I++ + GS G+Q+ ++ Sbjct: 62 FDDLFNFYIQALSKYRDNDIYRGSTSIGPHRDD--IDFFINDISLKSFGSQGQQRSSVLS 119 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA + TG PILLLD++ + LD +R+ L ++ D Q +T TD ++F+S Sbjct: 120 LKLAELEFLKLETGEYPILLLDDVMSELDTRRRDNLLSLLQDNNVQTLITATDINLFNS- 178 Query: 359 NETAKFMRI 367 + KF ++ Sbjct: 179 HPKNKFFKV 187 >gi|315605505|ref|ZP_07880542.1| recombination protein F [Actinomyces sp. oral taxon 180 str. F0310] gi|315312772|gb|EFU60852.1| recombination protein F [Actinomyces sp. oral taxon 180 str. F0310] Length = 398 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 98/404 (24%), Positives = 162/404 (40%), Gaps = 45/404 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FR++ + A T+ VG NG GKTN++EA+++LS R + + Sbjct: 1 MRVSHLALDDFRSWKHGVVELPAGTTVLVGANGQGKTNLVEALAYLSAFSSHRVGAEGAL 60 Query: 65 TRIGS------PSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 RI S P AR+ G E + ++ I + + +R+ +IN +R D L Sbjct: 61 VRIPSDEAENPPGGAVIRARIVSSGREQVVELEI-VRGKANRA----RINRAQVRPRDIL 115 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 +R P + RR FLD + + P H DF+R+ R R L+ Sbjct: 116 GL-VRTVVFAPEDLSLVRADPSVRRSFLDDLATQLSPLHASVRADFDRVARQRAALMKAA 174 Query: 177 YFDS--------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKL 226 S S + Q AEL +I+ R + AL +E ++ ++ Sbjct: 175 QASSRRGRTPDLSTLHVWDCQFAELSARISATRAAVAAAL----VEPTRRAYDDVADSPR 230 Query: 227 SLTGFLDGKFDQSFCALKEEYAKK-LFDGRKM------------DSMSRR--TLIGPHRS 271 LT D D+ E+ A L D + D R L+G HR Sbjct: 231 RLTLAFDASVDRVIGTDPEDPASADLTDAQAQAERMLAALAHVRDKEIERGVNLVGAHRD 290 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 DL + + + S GE V + + L L+S+ PIL+LD++ A LD +R Sbjct: 291 DLSLSLGSMPVK-GYASHGESWSVALALRLGAFELLSDGED-TPILILDDVFAELDSSRR 348 Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 L + + I + + SL A +R+ + I Sbjct: 349 QGLASLASRAEQVIVTCAVAEDLPSSLPHHALHVRLDAERGTVI 392 >gi|304309655|ref|YP_003809253.1| Recombinational DNA repair ATPase [gamma proteobacterium HdN1] gi|301795388|emb|CBL43586.1| Recombinational DNA repair ATPase [gamma proteobacterium HdN1] Length = 393 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 91/375 (24%), Positives = 160/375 (42%), Gaps = 48/375 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L IS+FRN ++ + VG NG GKT++LEA+ L+ G+ FR + R G+ Sbjct: 6 LEISDFRNLKAVEIAPAQGLNWVVGPNGSGKTSLLEALHLLATGKSFRANNLRSCIRGGA 65 Query: 70 PSFFSTFARVEGMEGLA---DISIKLETRDDRS--VRCLQINDVVIRVVDELNKHLRISW 124 + RV ++ A D+ +L D S VR + ++ + + + L + + Sbjct: 66 KT-----CRVVCLKNAAAYPDVIQRLGVERDLSGGVRAV-LDQLEVTKLSGLANQIAVCT 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPR--HRRRMIDFERLMRGRNRLLTEGYFDSSW 182 L+P + G RR FL +F ++ + + + D+ ++ RN LL Sbjct: 120 LLPDSINLLIGDPSLRREFLGWSMFHVEHNSDYLQVLRDYRFSLQQRNALLRRLNGSELP 179 Query: 183 CSSIEA-----------QMAELGVKINIARVEMINALSSLIMEYVQKE-----------N 220 S EA Q+ + +K++ R + + KE N Sbjct: 180 LSGNEAIRSKELDGWDRQLGKFALKLDERRSHFMTLFRERYFSLISKEQLNLRSSSYSSN 239 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 H +L L G+ DG +L++ A + R D T GPHR+D+ + Y K Sbjct: 240 EVHFEL-LRGWPDG------VSLEDALA----EARMRDIERGFTGSGPHRADIRISYAGK 288 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT 339 + + S G+ K ++ L A LI ++ G + + D+ A LDE+ +++ + Sbjct: 289 PVR-DYFSRGQLKHLISICVLVQADLIRSSRGKDGLVFIFDDAFAELDENHASSVLAALR 347 Query: 340 DIGSQIFMTGTDKSV 354 I Q F+T +D +V Sbjct: 348 SISVQTFVTTSDAAV 362 >gi|47093015|ref|ZP_00230794.1| DNA replication and repair protein RecF [Listeria monocytogenes str. 4b H7858] gi|47018583|gb|EAL09337.1| DNA replication and repair protein RecF [Listeria monocytogenes str. 4b H7858] gi|328468326|gb|EGF39332.1| recombination protein F [Listeria monocytogenes 1816] Length = 326 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 72/309 (23%), Positives = 132/309 (42%), Gaps = 43/309 (13%) Query: 77 ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136 A++EG S+ LE + + ++N + + + + +L + P + G Sbjct: 24 AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVKGA 83 Query: 137 SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQMAE 192 RRRFL+ + + P + + +++R+++ RN+ L + D + Q A+ Sbjct: 84 PGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQFAD 143 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL- 251 + + + R + I L + + + + LK EY + Sbjct: 144 VAINLTKRRADFIQKLEAY-----------------AAPIHHQISRGLETLKIEYKASIT 186 Query: 252 FDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 +G +KM+S+ +R TLIGPHR D + Y + GS G+Q+ Sbjct: 187 LNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQRT 245 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + I LA LI TG P+LLLD++ + LD+ +++ L + + Q F+T T S Sbjct: 246 TALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTSTSG 304 Query: 355 FDSLNETAK 363 D +ET K Sbjct: 305 ID--HETLK 311 >gi|291517731|emb|CBK71347.1| DNA replication and repair protein RecF [Bifidobacterium longum subsp. longum F8] Length = 412 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 44/356 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 65 TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 G + + + A G + SI R R + + +R D + K + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------- 175 S+ P R+ SG RR +++ ++P + + + F R+ + R LL + Sbjct: 117 SF-TPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNN 175 Query: 176 GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 G + S +E Q E GV + R +I L+ E F I L G Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLA---------EPFAAIYADLAGAG 226 Query: 233 DG-------------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 + FD + E + ++++ G ++ LIGP R D+ ++ Sbjct: 227 EQVTLTYAPSFDEVLMFDDPHPQISEHF-QRIYPGEVARGVN---LIGPQRDDMNLELAG 282 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 S GE + + + +A ++ + G PI++LD++ A LD+ +R + Sbjct: 283 IPAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQIL 337 >gi|296453190|ref|YP_003660333.1| DNA replication and repair protein RecF [Bifidobacterium longum subsp. longum JDM301] gi|296182621|gb|ADG99502.1| DNA replication and repair protein RecF [Bifidobacterium longum subsp. longum JDM301] Length = 412 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 82/357 (22%), Positives = 148/357 (41%), Gaps = 46/357 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 65 TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 G + + + A G + SI R R + + +R D + K + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------- 175 S+ P R+ SG RR +++ ++P + + + F R+ + R LL + Sbjct: 117 SF-TPEDQRLVSGDPGARRVMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANN 175 Query: 176 GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 G + S +E Q E GV + R +I L+ E F I L G Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLA---------EPFAAIYADLAGAG 226 Query: 233 DG-------------KFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYC 278 + FD + E + ++++ G M+R LIGP R D+ ++ Sbjct: 227 EQVTLTYAPSFDEVLMFDDPHPQISEHF-QRIYPGE----MARGVNLIGPQRDDMNLELA 281 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 S GE + + + +A ++ + G PI++LD++ A LD+ +R + Sbjct: 282 GIPAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQIL 337 >gi|317472422|ref|ZP_07931747.1| DNA replication and repair protein RecF [Anaerostipes sp. 3_2_56FAA] gi|316900142|gb|EFV22131.1| DNA replication and repair protein RecF [Anaerostipes sp. 3_2_56FAA] Length = 216 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 20/198 (10%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQK 218 + R+M RN LL + + ++++ Q+ + G ++ R + I L+ +I E Sbjct: 9 YNRVMAQRNNLLKQLAYQRELLDTLDSWDLQLVKYGSEVIRYRQKFIEDLNEIIRE---- 64 Query: 219 ENFPHIKLSLTGFLDG---KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 I +LTG + K+D S +E+ L R++D T GPHR D + Sbjct: 65 -----IHKNLTGKKEKIVLKYDYSVNY--DEFLTVLQRKREIDLKYASTGAGPHRDD--I 115 Query: 276 DYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 ++ I I GS G+Q+ + + LA L+ TG PILLLD++ + LD ++N L Sbjct: 116 EFLVNGIDIRKFGSQGQQRTAALSLKLAQIELVKRQTGETPILLLDDVLSELDSSRKNYL 175 Query: 335 FRIVTDIGSQIFMTGTDK 352 + DI + I TG ++ Sbjct: 176 LDSIKDIQTLITCTGLEE 193 >gi|332359507|gb|EGJ37326.1| recombination protein F [Streptococcus sanguinis SK1056] Length = 287 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 13/263 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I FRNY + F +F+G N GKTNILEAI FL+ R R S D+ Sbjct: 6 LKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTCSDKDLIHFTE 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + +E G + I L + R ++N + + + + + P Sbjct: 66 NDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188 ++ G RR+F+D + I P + + ++ +++ RN L D ++ + ++ Sbjct: 121 LQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNSYLKANDKVDETFLTVLDE 180 Query: 189 QMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLS-LTGFLDGKFDQSFCALKE 245 Q+ + G ++ R++ + L S + + +N + + L+ K D L+E Sbjct: 181 QLVDYGCRVIKHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHKIDN----LEE 236 Query: 246 EYAKKLFDGRKMDSMSRRTLIGP 268 Y L + RK D + ++ P Sbjct: 237 TYRSSLLNSRKRDLFKKIQVLVP 259 >gi|78211946|ref|YP_380725.1| DNA replication and repair protein RecF [Synechococcus sp. CC9605] gi|97181068|sp|Q3AML2|RECF_SYNSC RecName: Full=DNA replication and repair protein recF gi|78196405|gb|ABB34170.1| DNA replication and repair protein RecF [Synechococcus sp. CC9605] Length = 364 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 74/311 (23%), Positives = 140/311 (45%), Gaps = 22/311 (7%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN+ L+L + +G NG+GK+N+LEA+ L R R ++ D+ + +P Sbjct: 4 FRNHTVLQLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSNDRDLIQWDTPQ--- 60 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A + G D ++LE R + + ++ R +D + I + +D + Sbjct: 61 --ALIRADVGDGD-RLELELRRQGGRQARRNGKLLDRQLDLIGPLRCIGFSALDLD-LVR 116 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SWCSSIEAQM 190 G RR++LDR+V ++P + M RL+R R++L + S + + + QM Sbjct: 117 GEPALRRQWLDRVVLQLEPVYADLMARLNRLLRQRSQLWRQRQISSGERHALLEAFDVQM 176 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFC--ALK 244 A + +I+ R ++ L + + + L L LDG+ + A++ Sbjct: 177 ALVSTRIHRRRQRALHRLEPIAQRWQTHLSGGTETLELHYKPGSRLDGEDAEEPWRLAIE 236 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ ++ + ++ S +GPHR D I + GS G+Q+ +++G+ LA Sbjct: 237 EQLRQQREEEERLGSCR----VGPHR-DEIALLLGGSPARRFGSAGQQRSLVLGLKLAEL 291 Query: 305 RLISNTTGFAP 315 L++ G P Sbjct: 292 ELVTQLCGEPP 302 >gi|229077279|ref|ZP_04209964.1| DNA replication and repair protein recF [Bacillus cereus Rock4-2] gi|228706028|gb|EEL58331.1| DNA replication and repair protein recF [Bacillus cereus Rock4-2] Length = 293 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 13/264 (4%) Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + + P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 29 MNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGN 88 Query: 180 S----SWCSSIEAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFL 232 S + Q+ E G KI R E ++ L ++ I + + +++ + Sbjct: 89 SKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISR-GLEELEIVYKPSV 147 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 D +KE Y + ++ + TLIGPHR DL K + + GS G+Q Sbjct: 148 DVSESMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQ 206 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-- 350 + + + LA LI + PILLLD++ + LD+ +++ L + Q F+T T Sbjct: 207 RTTALSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSV 265 Query: 351 DKSVFDSLNETAKFMRISNHQALC 374 D ++L E AK + ++N C Sbjct: 266 DGIEHETLKE-AKTIHVTNGTVDC 288 >gi|148980122|ref|ZP_01815902.1| recombination protein F [Vibrionales bacterium SWAT-3] gi|145961423|gb|EDK26729.1| recombination protein F [Vibrionales bacterium SWAT-3] Length = 359 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 77/365 (21%), Positives = 155/365 (42%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN + + + +G NG GKT++LEA+ L GR F+ + + + Sbjct: 6 LIVKQFRNIEACDIQPSSGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F V G +D + I + + D + ++I+ + + +L + L + + Sbjct: 66 SELF-----VHGRFMTSDQFELPIGINKQRDGTTE-VKISGQTGQKLAQLAQVLPLQLIH 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P + + RR F+D VF + +RL + RN LL T ++ S Sbjct: 120 PEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE--LSY 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++A L I+ R +N L + E + P ++ + + D Sbjct: 178 WDQELARLAESISEWRATYVNQLKE-VAEEICATFLPEFEIKINYYRGWDKDTP------ 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 YA+ L + D T GP+++DL + + S G+ K+++ + +A + Sbjct: 231 -YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + +Q+F++ T + D +E ++ Sbjct: 289 HLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATEAQVFVSSITADQIADMHDENSRM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|329944738|ref|ZP_08292817.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon 170 str. F0386] gi|328529874|gb|EGF56764.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon 170 str. F0386] Length = 405 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 88/385 (22%), Positives = 157/385 (40%), Gaps = 47/385 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +FR+Y +L L + + FVG NG GKTN++EAI +L+ R + + R Sbjct: 3 VSDLSLDDFRSYRNLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTALVR 62 Query: 67 IGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 P R + G +++E ++ R ++N R D L LR Sbjct: 63 RAVPGQSQPAGAVVRARAVHGERPSVLEIEIIAGKANRA-RLNRGSCRPRDLLGV-LRTV 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + RR FLD +V + P + ++++ R LL S Sbjct: 121 VFAPEDLSLVRNEPGVRRGFLDDLVVTLRPGLAGVRAEHDKILAQRASLLKSARAARSST 180 Query: 184 SSI-------EAQMAELGVKINIARVEMINAL--------------------------SS 210 +S+ + Q+A ++ ARV+++ L SS Sbjct: 181 ASMLSTLEVWDTQLAAAAARLITARVDVVRRLRPWVASAYETVSGSSGERSRAQLAYRSS 240 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270 L+ + PH + + + D++ + E A R++D + L+G HR Sbjct: 241 LLGHEGSPDPDPHDEAAWLAGEESLLDEAAVTTRLESAMGELHAREIDRGA--NLVGAHR 298 Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFA----PILLLDEISAH 325 DL + + S GEQ + + + LA ++ ++ + P+L+LD++ A Sbjct: 299 DDLSL-FLTGLPARGFASHGEQWSLALALRLASYDMLRTDVDAYGGDGEPVLILDDVFAS 357 Query: 326 LDEDKRNALFRIVTDIGSQIFMTGT 350 LDE +R AL R+V Q+ +T Sbjct: 358 LDEQRRRALARMVAG-AQQVLLTAA 381 >gi|46200023|ref|YP_005690.1| recF protein [Thermus thermophilus HB27] gi|46197650|gb|AAS82063.1| recF protein [Thermus thermophilus HB27] Length = 343 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 148/342 (43%), Gaps = 34/342 (9%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN A + VG N GKT++L I L+ G G AD+ R G + Sbjct: 11 FRNLALEAYRPPPGLSALVGANAQGKTSLLLGI-HLALG-GEVPLGLADLVRFGEEEAW- 67 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHLRISWLVPSMDRI 132 A VE G + +LE R R + +N V +R + EL + +S L ++ + Sbjct: 68 LHAEVETELG----AYRLEHRLGPGGREVLLNGKRVSLRALWELPGSVLVSPL--DLEAV 121 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 G ERR +LDR++ R+ + +E+ +R RN LL G S+ + ++A Sbjct: 122 L-GPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAG---GEGLSAWDRELAR 177 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKL 251 G +I R + + ++ E + +L G + +++ E + L Sbjct: 178 YGDEIVALRRRFLRRFAPILRE---------VHAALAAKEAGLRLEETA---GEGVLRAL 225 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLAHARLISN 309 R + +TL+GPHR DL+ + AH S GE K + + + LA RL+ Sbjct: 226 EASRAEERERGQTLVGPHRDDLVFLLEGRP---AHRFASRGEAKTLALALRLAEHRLLGE 282 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 G P+LL+DE LDE +R A+ + Q + G + Sbjct: 283 HHGEPPLLLVDEWGEELDEARRRAVLAYAQAL-PQAILAGLE 323 >gi|213690932|ref|YP_002321518.1| DNA replication and repair protein RecF [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254790465|sp|B7GSG2|RECF_BIFLI RecName: Full=DNA replication and repair protein recF gi|213522393|gb|ACJ51140.1| DNA replication and repair protein RecF [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320456978|dbj|BAJ67599.1| recombination protein RecF [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 412 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 79/351 (22%), Positives = 148/351 (42%), Gaps = 42/351 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 65 TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 G + + + A G + SI R R + + +R D + K + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S+ P R+ SG RR +++ ++P + + + F R+ + R LL + +++ Sbjct: 117 SF-TPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANN 175 Query: 183 CSSIEA----------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 ++A Q E GV + R +I+ L+ E F I L G Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVVLTRMRAHVISLLA---------EPFAAIYADLAGAG 226 Query: 233 D-------GKFDQSFC-----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 + FD+ E+ ++++ G ++ LIGP R D+ +D Sbjct: 227 EQVTLTYAPSFDEVLMFNDPHPQISEHFQRIYPGEVARGVN---LIGPQRDDMNLDLAGI 283 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 S GE + + + +A ++ + G PI++LD++ A LD+ +R Sbjct: 284 PAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRR 333 >gi|23335941|ref|ZP_00121172.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Bifidobacterium longum DJO10A] gi|227547509|ref|ZP_03977558.1| recombination protein RecF [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133630|ref|YP_004000969.1| recf [Bifidobacterium longum subsp. longum BBMN68] gi|322688194|ref|YP_004207928.1| recombination protein RecF [Bifidobacterium longum subsp. infantis 157F] gi|227212024|gb|EEI79920.1| recombination protein RecF [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311772888|gb|ADQ02376.1| RecF [Bifidobacterium longum subsp. longum BBMN68] gi|320459530|dbj|BAJ70150.1| recombination protein RecF [Bifidobacterium longum subsp. infantis 157F] Length = 412 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 44/356 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 65 TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 G + + + A G + SI R R + + +R D + K + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------- 175 S+ P R+ SG RR +++ ++P + + + F R+ + R LL + Sbjct: 117 SF-TPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNN 175 Query: 176 GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 G + S +E Q E GV + R +I L+ E F I L G Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLA---------EPFAAIYADLAGAG 226 Query: 233 DG-------------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 + FD + E + ++++ G ++ LIGP R D+ ++ Sbjct: 227 EQVTLTYAPSFDEVLMFDDPHPQISEHF-QRIYPGEVARGVN---LIGPQRDDMNLELGG 282 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 S GE + + + +A ++ + G PI++LD++ A LD+ +R + Sbjct: 283 IPAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQIL 337 >gi|239622840|ref|ZP_04665871.1| recombination protein RecF [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514837|gb|EEQ54704.1| recombination protein RecF [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 412 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 78/356 (21%), Positives = 148/356 (41%), Gaps = 44/356 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 65 TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 G + + + A G + SI R R + + +R D + K + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S+ P R+ SG RR +++ ++P + + + F R+ + R LL + +++ Sbjct: 117 SF-TPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANN 175 Query: 183 CSSIEA----------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 ++A Q E GV + R +I L+ E F I L G Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLA---------EPFAAIYADLAGAG 226 Query: 233 DG-------------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 + FD + E + ++++ G ++ LIGP R D+ ++ Sbjct: 227 EQVTLTYAPSFDEVLMFDDPHPQISEHF-QRIYPGEVARGVN---LIGPQRDDMNLELGG 282 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 S GE + + + +A ++ + G PI++LD++ A LD+ +R + Sbjct: 283 IPAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQIL 337 >gi|294790226|ref|ZP_06755384.1| RecF protein [Scardovia inopinata F0304] gi|294458123|gb|EFG26476.1| RecF protein [Scardovia inopinata F0304] Length = 422 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 89/370 (24%), Positives = 148/370 (40%), Gaps = 55/370 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG------------- 53 I L + +R++ + + + G NG+GKTNI+EAI FLS Sbjct: 3 ISRLALDHYRSWNTCLIDLTDSVNVLYGHNGLGKTNIVEAIEFLSTSSSHRVNSSQPLIQ 62 Query: 54 RGFRRASYADVTRIGSPSFFSTFA--RVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111 RG+++A+ I S + S R E ++ + R VR + + +R Sbjct: 63 RGYKQATIRANLEIPSQAGSSKQGSFRQESARQTERFTVTIPIRGANRVRVNNNSSLYMR 122 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 ++ ++ P + S RRRFLD + P + + + R R Sbjct: 123 ---DIVGQIKTVVFAPEDQWLLSLDPSRRRRFLDDAGIQLIPEYYDLSQKYSHIARQRVA 179 Query: 172 LLTE---GYFDSS---------WCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQK 218 LL G +SS W Q+ G+ ++ R +++ LS L E Y Q Sbjct: 180 LLKNMGSGQRESSADDYTGLEIWT----GQLISTGLSLSTMRQKIVEKLSPLFSEIYAQL 235 Query: 219 ENFPH-IKLSLTGFLDGKFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274 H +L+ FDQS F + + ++LF G R LIGPHR DL Sbjct: 236 AGSEHKAQLAYHPSFAEIFDQSDDPFTLISNHF-QRLFPGELAQG---RNLIGPHRDDL- 290 Query: 275 VDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLIS---------NTTGFAPILLLDEISA 324 D+ + + S GE + + + +A +L+S + PIL+LD++ + Sbjct: 291 -DFSLHGMPAKEYASNGEMWTMALALKMALFQLLSENLLSESSVSAGAGKPILILDDVFS 349 Query: 325 HLDEDKRNAL 334 LD +R + Sbjct: 350 QLDTSRREKI 359 >gi|206895150|ref|YP_002247528.1| RecF/RecN/SMC N domain, putative [Coprothermobacter proteolyticus DSM 5265] gi|206737767|gb|ACI16845.1| RecF/RecN/SMC N domain, putative [Coprothermobacter proteolyticus DSM 5265] Length = 342 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 72/328 (21%), Positives = 147/328 (44%), Gaps = 38/328 (11%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +++ + + FRN + + T+ +G+N GKT++LE++ +S GR FR + D+ Sbjct: 3 RVRSIKLYNFRNLLNQEIEIPDGLTVLMGENMQGKTSLLESLFIVSTGRSFRTRNIGDIV 62 Query: 66 RIGSPSFFSTFARVEGMEGLADI--SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G A++E A++ S+ LE + R L +N I + + Sbjct: 63 RWGENQ-----AQIELSVDGANVVFSVSLEPK----ARSLLLNGERISSFESPLAGKVLY 113 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + +D + + RR DR++ D + R + +L+ RN +L+ G+++ Sbjct: 114 YSDEYLDLVSTPSGT--RRLFDRLLELSDRENMRLAAQYRKLVSERNSMLSSGFYNEPLD 171 Query: 184 SSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + ++ ++ K R ++++ A +L FP + FD S+ Sbjct: 172 EVLSDRIDKISQKWREKRQAFLQLVQASLNL--------RFPQV-----------FDSSY 212 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + K ++ + + TL G R +++D +K ++ S G K++L +F Sbjct: 213 -SFKFSVETSDIKNLSLEMLKKTTLFGFQRDKILLDVNNKEVSTV-ASRGFLKILLTFVF 270 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDE 328 + A LI G+ +LL+D+ +A++DE Sbjct: 271 VRTAELIHEKQGYV-LLLMDDFNANIDE 297 >gi|55980233|ref|YP_143530.1| recombination protein F [Thermus thermophilus HB8] gi|55771646|dbj|BAD70087.1| RecF protein [Thermus thermophilus HB8] Length = 343 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 148/342 (43%), Gaps = 34/342 (9%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN A + VG N GKT++L I L+ G G AD+ R G + Sbjct: 11 FRNLALEAYRPPPGLSALVGANAQGKTSLLLGI-HLALG-GEVPLGLADLVRFGEEEAW- 67 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHLRISWLVPSMDRI 132 A VE G + +LE R R + +N V +R + EL + +S L ++ + Sbjct: 68 LHAEVETELG----AYRLEHRLGPGGREVLLNGKRVSLRTLWELPGSVLVSPL--DLEAV 121 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 G ERR +LDR++ R+ + +E+ +R RN LL G S+ + ++A Sbjct: 122 L-GPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAG---GEGLSAWDRELAR 177 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKL 251 G +I R + + ++ E + +L G + +++ E + L Sbjct: 178 YGDEIVALRRRFLRRFAPILRE---------VHAALAAKEAGLRLEETAG---EGVLRAL 225 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLAHARLISN 309 R + +TL+GPHR DL+ + AH S GE K + + + LA RL+ Sbjct: 226 EASRAEERERGQTLVGPHRDDLVFLLEGRP---AHRFASRGEAKTLALALRLAEHRLLGE 282 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 G P+LL+DE LDE +R A+ + Q + G + Sbjct: 283 HHGEPPLLLVDEWGEELDEARRRAVLAYAQAL-PQAILAGLE 323 >gi|327398177|ref|YP_004339046.1| SMC domain-containing protein [Hippea maritima DSM 10411] gi|327180806|gb|AEA32987.1| SMC domain protein [Hippea maritima DSM 10411] Length = 326 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 80/352 (22%), Positives = 160/352 (45%), Gaps = 52/352 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + I+ FRN+ L + FD + I G NG GKTN++EA+ G F+ Sbjct: 3 IKNIIITNFRNFNLLEVKFD-KINIIKGKNGTGKTNLIEAVYLTLNGHPFKNNLKVLKKE 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + P+ + +I ++ DD+ + ++++ ++RVVD +++ + Sbjct: 62 LEKPTILNAIIDKH--------TIFIKIDDDK--KYIKLDSKLVRVVDLKKTFACLNYSI 111 Query: 127 PSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 S D +FS +DR + + D ++I++++ R + L + D Sbjct: 112 NSFISFRSKDYLFS--------LVDRGISSYDHSIIDKLIEYKKTNRLKKELFSSPKPDY 163 Query: 181 SWCSSIEAQMAELGVKINIAR----VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + + + ++ + +I++ R +++ N + + + K KL L + GK+ Sbjct: 164 NMLNFLNDKIKSIVDEISLKRDGFILKLKNDVENCFCSFFGK------KLELI-YEIGKY 216 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + S KE+ ++ G K DS+ I + DL + + S GE+K+ L Sbjct: 217 NDSVFE-KEKQKNRVLFGFKKDSLK----IILNNKDLFL----------YSSVGEKKISL 261 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + I L+ A++ N++G PILL+D++ LD + F I+ + +Q +T Sbjct: 262 LCIVLSIAKM-YNSSGVEPILLIDDLEGDLDPQVQKRAFDIIKTLPNQSIIT 312 >gi|315170510|gb|EFU14527.1| DNA replication and repair protein RecF [Enterococcus faecalis TX1342] Length = 200 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 96/202 (47%), Gaps = 9/202 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 IG + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARV 202 + + Q+AE G K+ AR+ Sbjct: 176 VYLDILTEQLAEFGGKVLYARL 197 >gi|71064584|ref|YP_263311.1| DNA replication and repair protein RecF [Psychrobacter arcticus 273-4] gi|71037569|gb|AAZ17877.1| DNA replication and repair protein RecF [Psychrobacter arcticus 273-4] Length = 404 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 96/410 (23%), Positives = 160/410 (39%), Gaps = 82/410 (20%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L IS RN + L A + +G NG GKT++LE + LS G+ FR Sbjct: 2 IERLQISYLRNLTPINLA-PAACNVIIGANGSGKTSLLEGMFLLSRGKSFRH-------- 52 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLE-------TRDDRSVRCLQINDVVIRVVDELNKH 119 P + ++ + A + KL + + L++N + L + Sbjct: 53 -NQPKRY-----IQHHKDAATVHAKLSDGRTLAIQKQADATTILRLNQTTVYNQSILTEQ 106 Query: 120 LRISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 L + PS MD + G S RR+ LD +VF + + I ++RL++ RN LL + Sbjct: 107 LPTLLIDPSTMDMLEQG-SASRRQLLDWLVFHMKQGFHPQWIAYQRLLKQRNSLLKQRRH 165 Query: 179 DSSWCSSIEAQMAELGV--KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + Q+AEL K + +I+ I E Q P+ S+ L Sbjct: 166 LT------HVQLAELRAWDKGLASHAALIHHYREAIFEAWQ----PYFSESIAQLLPAYA 215 Query: 237 DQSFCALKEEYAK------KLFDGRKMDSMSRRTLIGPHRSDLIV------------DYC 278 +Q + Y +L + D T IG HR+D+ V ++ Sbjct: 216 EQLSLSYNAGYDTSVALDIQLNERLDQDLQLGYTRIGNHRADIHVHWRSIRPIHKANEHL 275 Query: 279 DKAITIAHGST----------------GEQKVVLVGIFLAHARLISNT------------ 310 + + A ST GE+K+++ + L+ L+ NT Sbjct: 276 NSPLAAAADSTFKLPILKEQAANILSRGEKKLLITALRLSQLPLLLNTGNDLEASVNDAK 335 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 P++LLD+I+A LD+ L + + Q+FMT S+ + E Sbjct: 336 LSATPVVLLDDITAELDDRAIEILLSTLAQLPCQVFMTSLTDSILPLVYE 385 >gi|46200852|ref|ZP_00207873.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Magnetospirillum magnetotacticum MS-1] Length = 83 Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 33/73 (45%), Positives = 48/73 (65%) Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + I LA R+ + T G AP+LLLDE++AHLDE +R ALF + + Q +MTGTD +F Sbjct: 1 MSIVLAQGRVQNQTGGRAPLLLLDEVAAHLDEVRRAALFDELCALRVQSWMTGTDAMLFA 60 Query: 357 SLNETAKFMRISN 369 E A+F R+++ Sbjct: 61 GFGERAQFFRVTD 73 >gi|93004836|ref|YP_579273.1| DNA replication and repair protein RecF [Psychrobacter cryohalolentis K5] gi|92392514|gb|ABE73789.1| DNA replication and repair protein RecF [Psychrobacter cryohalolentis K5] Length = 402 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 96/405 (23%), Positives = 168/405 (41%), Gaps = 74/405 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L IS RN + L A + +G NG GKT++LEAI LS G+ FR + Sbjct: 2 IERLQISHLRNLTHINLS-PAACNVIIGANGSGKTSLLEAIFLLSRGKSFRHHQPKRYIQ 60 Query: 67 IGSPSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + A + L D ++ ++ + D + L++N + L + L + Sbjct: 61 -----HYQESATIHA--NLNDSRTLAIQKKAD-ATTILRLNQTTVYNQSILTEQLPTLLI 112 Query: 126 VPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 PS MD + G S RR+ LD +VF + + + ++RL++ RN LL + + Sbjct: 113 DPSTMDMLEQG-SASRRQLLDWLVFHMKQGFHSQWVAYQRLLKQRNSLLKQRRHLT---- 167 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENF-PHIKLSLTGFLDGKFDQSFC 241 + Q+AEL A + +++ ++LI Y Q E + P+ S+ L +Q Sbjct: 168 --QVQLAELK-----AWDKGLSSHAALIHHYRQAIFEAWQPYFSKSIAQLLPAYAEQLSL 220 Query: 242 ALKEEYAK------KLFDGRKMDSMSRRTLIGPHRSDLIVDY------------------ 277 + Y +L + + D T IG HR+D+ V + Sbjct: 221 SYNAGYDTGIALDIQLNERLEQDLQLGYTRIGNHRADIHVHWRSIGSRQIADENLNSPLS 280 Query: 278 ----------CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT------------GFAP 315 ++A I S GE+K+++ + L+ L+ N P Sbjct: 281 ADSTVKLPILKEQAANIL--SRGEKKLLITALRLSQLPLLLNAKTNSELYNSDAKLSATP 338 Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 ++LLD+I+A LD L + + Q+F+T S+ ++E Sbjct: 339 VVLLDDITAELDNKAIEILLSTLAQLPCQVFVTSLTDSILPLVHE 383 >gi|158311871|ref|YP_001504379.1| DNA replication and repair protein RecF [Frankia sp. EAN1pec] gi|158107276|gb|ABW09473.1| DNA replication and repair protein RecF [Frankia sp. EAN1pec] Length = 457 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 4/169 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA L LV + T FVG NG GKTN++EAI F++ R A+ A + Sbjct: 1 MHLTHLSLTDFRSYARLDLVLEPGVTTFVGSNGQGKTNLIEAIGFVATLGSHRVANDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G R + G ++++ ++ R +++N + ++ L Sbjct: 61 VREGC---GQAVVRARIVRGDRAALVEMQIVPGKANR-VRLNRAPVARARDVAGLLATVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 P + G ERRRFLD ++ A PR D++R+++ R+ LL Sbjct: 117 FAPEDLALVKGDPAERRRFLDDLLVARAPRMAAVQSDYDRVLKQRSALL 165 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 TL+GPHR DL++ + + S GE + + + LA L+ P+LLLD++ Sbjct: 349 TLVGPHRDDLLLSVNGRPAR-GYASHGESWSLALALRLASFELL-RADDREPVLLLDDVF 406 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMT 348 A LD +R L +V D Q+ +T Sbjct: 407 AELDTRRRARLAALVADA-EQVLVT 430 >gi|85057981|ref|YP_453683.1| recombination protein F [Sodalis glossinidius str. 'morsitans'] gi|97180974|sp|Q2NX47|RECF_SODGM RecName: Full=DNA replication and repair protein recF gi|84778501|dbj|BAE73278.1| DNA metabolism protein RecF [Sodalis glossinidius str. 'morsitans'] Length = 364 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 82/365 (22%), Positives = 145/365 (39%), Gaps = 20/365 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L A VG NG GKT++LEAI L GR FR V R Sbjct: 6 LMIRDFRNISVADLSLAADFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQSGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F R+E A + +R+ ++I+ V EL + L + + P Sbjct: 66 PEFV-LHGRIEAGNVDARATSVGLSRNRLGDSTVRIDGSDGHKVAELAQLLPMQLITPEG 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR F+D F +P + RL++ RN L + S + Sbjct: 125 FTLLNGGPKYRRAFMDWGCFHNEPAFFTAWSNLRRLLKQRNAALRQ----VSRYQQLRVW 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF---CALKEE 246 EL + + N +S +Y + + D SF + + Sbjct: 181 DQEL--------IPLANRISEWRADYSAAIAADITATCAQFLPEFRLDFSFQRGWDKESD 232 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFLAHAR 305 + + L + D T GPH++D + + + + S G+ K+++ + LA Sbjct: 233 FGELLERQFERDRALTYTASGPHKADFRIRA--EGVPVEDILSRGQLKLLMCALRLAQGE 290 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKF 364 +++ G + L+D+ ++ LD +R L + +Q+F++ + D +E K Sbjct: 291 FLTHRNGRRCLYLIDDFASELDTGRRRLLAERLKATHAQVFVSAVSADQIRDIPDEKGKM 350 Query: 365 MRISN 369 ++ Sbjct: 351 FKVEQ 355 >gi|319648522|ref|ZP_08002738.1| DNA replication and repair protein recF [Bacillus sp. BT1B_CT2] gi|317389601|gb|EFV70412.1| DNA replication and repair protein recF [Bacillus sp. BT1B_CT2] Length = 275 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 62/269 (23%), Positives = 114/269 (42%), Gaps = 47/269 (17%) Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182 P + G RRRFLD + + P + + +++++ RN L T D + Sbjct: 23 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDQTM 82 Query: 183 CSSIEAQMAELGVKINIARVEMIN---------------ALSSLIMEYVQKENFPHIKLS 227 + Q+ E K+ + R++ ++ L L ++Y H L Sbjct: 83 LDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKY-------HTSLH 135 Query: 228 LTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 ++ D + ++F L+++ ++ +L GPHR D++ Y + Sbjct: 136 VSDSPDLSKMINSYQETFSKLRDKEIERGV-----------SLSGPHRDDVLF-YVNGRD 183 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 +GS G+Q+ + + LA LI G PILLLD++ + LD+ +++ L + Sbjct: 184 VQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-R 242 Query: 343 SQIFMTGTDKSVFD--SLNETAKFMRISN 369 Q F+T T D +LNE A+ R+ N Sbjct: 243 VQTFVTTTSVDGIDHKTLNE-AEIFRVEN 270 >gi|51316249|sp|Q6YI30|RECF_SODGL RecName: Full=DNA replication and repair protein recF gi|37359208|gb|AAN73890.1| DNA recombinase F [Sodalis glossinidius] Length = 364 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 82/365 (22%), Positives = 145/365 (39%), Gaps = 20/365 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + L A VG NG GKT++LEAI L GR FR V R Sbjct: 6 LMIRDFRNISVADLSLAADFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQSGRVIRHEQ 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P F R+E A + +R+ ++I+ V EL + L + + P Sbjct: 66 PEFV-LHGRIEAGNVDARATSVGLSRNRLGDSTVRIDGSDGHKVAELAQLLPMQLITPEG 124 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + +G RR F+D F +P + RL++ RN L + S + Sbjct: 125 FTLLNGGPKYRRAFMDWGCFHNEPGFFTAWSNLRRLLKQRNAALRQ----VSRYQQLRVW 180 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF---CALKEE 246 EL + + N +S +Y + + D SF + + Sbjct: 181 DQEL--------IPLANRISEWRADYSAAIAADITATCAQFLPEFRLDFSFQRGWDKESD 232 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFLAHAR 305 + + L + D T GPH++D + + + + S G+ K+++ + LA Sbjct: 233 FGELLERQFERDRALTYTASGPHKADFRIRA--EGVPVEDILSRGQLKLLMCALRLAQGE 290 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKF 364 +++ G + L+D+ ++ LD +R L + +Q+F++ + D +E K Sbjct: 291 FLTHRNGRRCLYLIDDFASELDTGRRRLLAERLKATHAQVFVSAVSADQIRDIPDEKGKM 350 Query: 365 MRISN 369 ++ Sbjct: 351 FKVEQ 355 >gi|157414178|ref|YP_001485044.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9215] gi|157388753|gb|ABV51458.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9215] Length = 297 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/265 (21%), Positives = 130/265 (49%), Gaps = 20/265 (7%) Query: 105 INDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +N+ +++ E+ ++R + + +D + S S RR ++D++V ++P + + F Sbjct: 28 VNESLLKKQSEIKNYIRSVCFCSNDIDIVRSEPSY-RRTWIDKVVSQLEPVYLDLISRFN 86 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 RL++ R+ F + S I + ++++I + +++ + H Sbjct: 87 RLLKQRSHFWRSESFLKTQSSDI---VESFDIQMSIISTRIFRRRRRALLKIKPYIEYWH 143 Query: 224 IKLSLT------GFLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 LS + +L G + S + ++ A++L + R ++S++ + GPHR D Sbjct: 144 NHLSKSKEQIDINYLSGIKNISPEEEEEEVISKKIAEQLLNQRSIESLTGKCNFGPHRDD 203 Query: 273 LIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 +++ +++ +GS+G+Q+ ++ + +A L++ T +PIL+LD++ A LD ++ Sbjct: 204 --IEFLINNVSVRKYGSSGQQRTFILALKMAELDLLTKTLNVSPILILDDVLAELDLTRQ 261 Query: 332 NALFRIVTDIGSQIFMTGTDKSVFD 356 N L V SQ F++ T F+ Sbjct: 262 NLLLNSVGK-DSQCFISATHLDKFN 285 >gi|86147177|ref|ZP_01065493.1| recombination protein F [Vibrio sp. MED222] gi|85835061|gb|EAQ53203.1| recombination protein F [Vibrio sp. MED222] Length = 359 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 76/365 (20%), Positives = 155/365 (42%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN + ++ + +G NG GKT++LEA+ L GR F+ + + + Sbjct: 6 LIVKQFRNIEACDILPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F V G +D + I + + D + ++I+ + + +L + L + + Sbjct: 66 SELF-----VHGRFMTSDQFELPIGINKQRDGTTE-VKISGQTGQKLAQLAQVLPLQLIH 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P + + RR F+D VF + +RL + RN LL T ++ S Sbjct: 120 PEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE--LSY 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++A L I+ R + L + E + P ++ + + D Sbjct: 178 WDQELARLAESISQWRATYVEQLKE-VAEEICATFLPEFEIKINYYRGWDKDTP------ 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 YA+ L + D T GP+++DL + + S G+ K+++ + +A + Sbjct: 231 -YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + +Q+F++ T + D +E ++ Sbjct: 289 HLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSRM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|153826430|ref|ZP_01979097.1| recF protein [Vibrio cholerae MZO-2] gi|149739816|gb|EDM54011.1| recF protein [Vibrio cholerae MZO-2] Length = 311 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 123/258 (47%), Gaps = 15/258 (5%) Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173 +L + L + + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 60 QLAQILPLQLIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLK 119 Query: 174 -TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + Y + S+ + ++A L +I+ R +N L + + E + + P + L + Sbjct: 120 SAQSYRELSYW---DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYR 175 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + DQ + ++ E+ ++ D T GP+++DL + + S G+ Sbjct: 176 GWEKDQPYQSILEKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQL 227 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TD 351 K+++ + +A + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ Sbjct: 228 KLMVCALRVAQGQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITE 287 Query: 352 KSVFDSLNETAKFMRISN 369 V D L+E++K +++ Sbjct: 288 SQVADMLDESSKTFHVAH 305 >gi|254525401|ref|ZP_05137453.1| RecF protein [Prochlorococcus marinus str. MIT 9202] gi|221536825|gb|EEE39278.1| RecF protein [Prochlorococcus marinus str. MIT 9202] Length = 319 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/259 (21%), Positives = 127/259 (49%), Gaps = 20/259 (7%) Query: 105 INDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +N+ +++ E+ ++R + + +D + S S RR ++D++V ++P + + F Sbjct: 50 VNESILKKQSEIKNYIRSVCFCSNDIDIVRSEPSY-RRTWIDKVVSQLEPVYLDLISRFN 108 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 RL++ R+ F + S I + ++++I + +++ + H Sbjct: 109 RLLKQRSHFWRSESFLKTQSSDI---VESFDIQMSIISTRIFRRRRRALLKIKPYVEYWH 165 Query: 224 IKLSLT------GFLDGKFDQSFC-----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 LS + +L G + S + ++ A++L + R ++S++ + GPHR D Sbjct: 166 NHLSKSKEQIDINYLSGIKNISLEEEEEEVISKKIAEQLLNQRSIESLTGKCNFGPHRDD 225 Query: 273 LIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 +++ +++ + S+G+Q+ ++ + +A L++ T +PIL+LD++ A LD ++ Sbjct: 226 --IEFLINNVSVRKYASSGQQRTFILALKMAELDLLTKTLNVSPILILDDVLAELDLTRQ 283 Query: 332 NALFRIVTDIGSQIFMTGT 350 N L V SQ F++ T Sbjct: 284 NLLLNSVGK-DSQCFISAT 301 >gi|115378326|ref|ZP_01465492.1| RecF protein [Stigmatella aurantiaca DW4/3-1] gi|115364680|gb|EAU63749.1| RecF protein [Stigmatella aurantiaca DW4/3-1] Length = 397 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 16/233 (6%) Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSSIEAQM 190 + G RR FLDR VF P + D+ R ++ RNRLL +G ++++ + + + Sbjct: 39 VVKGGPEARRTFLDRAVFNRFPAFLKESRDYARALKNRNRLLRDGPAAEAAYLDAYDETL 98 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT----GFLDGKFDQSFCALKE- 245 A G ++ + R ++ L+ + F I ++ G+ Q F + E Sbjct: 99 ARAGARVYVRRRALMAELAPRA-----QATFASIGRTVDPAAYGYHPAHLAQEFAEVDEV 153 Query: 246 ---EYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + + GR+ + R T +GPH D+ V ++ A+ S G+Q+ +++G + Sbjct: 154 RLADALLEALAGRRRRDLERGFTSVGPHVDDVAVTLGGRSAR-AYASQGQQRALVLGWKI 212 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 A + GF P+LLLD++S+ LD ++ L + G+Q+F+T TD S+ Sbjct: 213 AEIENLHAALGFLPLLLLDDVSSELDPERNAYLMGYLAASGAQVFLTTTDASL 265 >gi|282877403|ref|ZP_06286226.1| DNA replication and repair protein RecF [Prevotella buccalis ATCC 35310] gi|281300455|gb|EFA92801.1| DNA replication and repair protein RecF [Prevotella buccalis ATCC 35310] Length = 405 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 89/367 (24%), Positives = 152/367 (41%), Gaps = 39/367 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K ++I ++N L F + +G NG GKTN+L+A+ +LS F R+++ + Sbjct: 18 LKKISILNYKNIQVADLTFSPKLNCLIGHNGEGKTNLLDAVYYLS----FCRSAFNPIDS 73 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS--- 123 + F ++G+ L D+ D+ + C R ++ R+S Sbjct: 74 -QVITHDRDFFVLDGLY-LNDMG------DEERIYCGMKRGTRKRFKRNQKEYKRLSQHI 125 Query: 124 ------WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEG 176 ++ P+ + G S RRRFLD +V +D + + + + + RN LL E Sbjct: 126 GLIPLIFVSPADTALIDGGSDARRRFLDMVVSQLDHSYIELLSRYNKALTQRNALLKAEQ 185 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 DS+ +E +MA G I R + + + H +SL + Sbjct: 186 EPDSALMEILEQEMATQGEAIYAKRDAFVREFIPVFQTIYDHVSGCHETVSLQYISHAQR 245 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGSTGEQK 293 ++ + R D +L G HR DL I Y K GS G+ K Sbjct: 246 GPLLDVIQRD--------RHKDRAVGYSLHGVHRDDLEMMIGGYQLK----REGSQGQNK 293 Query: 294 VVLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD 351 ++ + LA + T + P+LLLD+I LD + + +V D QIF+T T+ Sbjct: 294 TYVLALKLAQFDFLKRTASSTTPLLLLDDIFDKLDAGRVERIVNMVAGDAYGQIFITDTN 353 Query: 352 KSVFDSL 358 + DS+ Sbjct: 354 RDHLDSI 360 >gi|313611862|gb|EFR86322.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL F2-208] Length = 278 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 114/267 (42%), Gaps = 43/267 (16%) Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---- 174 +L + P + G RRRFL+ + + P + + +++R+++ RN+ L Sbjct: 18 NLNVVIFAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQM 77 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + D + Q A++ + + R + I L + + Sbjct: 78 KRKVDPILLDILTEQFADVAINLTKRRADFIQKLEAY-----------------AAPIHH 120 Query: 235 KFDQSFCALKEEY-AKKLFDG-----------RKMDSMSRR------TLIGPHRSDLIVD 276 + + LK EY A +G +KM+S+ +R TLIGPHR D + Sbjct: 121 QISRGLETLKIEYKASVTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF- 179 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 Y + GS G+Q+ + I LA LI TG P+LLLD++ + LD+ +++ L Sbjct: 180 YINGQNVQDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLG 239 Query: 337 IVTDIGSQIFMTGTDKSVFDSLNETAK 363 + + Q F+T T S D +ET K Sbjct: 240 AI-EGKVQTFVTTTSTSGID--HETLK 263 >gi|83814830|ref|YP_444220.1| DNA replication and repair protein RecF [Salinibacter ruber DSM 13855] gi|97180944|sp|Q2S6G1|RECF_SALRD RecName: Full=DNA replication and repair protein recF gi|83756224|gb|ABC44337.1| DNA replication and repair protein RecF [Salinibacter ruber DSM 13855] Length = 412 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 81/377 (21%), Positives = 155/377 (41%), Gaps = 22/377 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FR +A + G NG GKTN+LEA+ +L + F + R + Sbjct: 6 LRLRSFRAHAESEFDLAPSINLLYGANGAGKTNVLEAVHYLCLTKSFTASRDRYAVRKDA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P +F R+ G ++++L + + +N + + ++ L + P Sbjct: 66 P-YFEIEGRI-GQVREEPMTVRLAYVPGEG-KSIFVNGAELDRLADIVGTLPVVVFSPED 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE-- 187 + +G ERRRF++ ++ + ++ + R R RN +L Y S E Sbjct: 123 YDLTAGGPSERRRFVNNILSQARSVYMETLMKYRRARRQRNEVL-RSYKKRSAPPPDELL 181 Query: 188 ----AQMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLTGFLDGKFDQS 239 ++ LG +I R + + A + + E ++ P I+ D D + Sbjct: 182 APWTEKLVGLGSRIVHRRQQFLQAFADDLEEAYRRIDAVAERPTIEYDTIA--DLAPDAT 239 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 A+++E+ L + + TL+GP R +L+ D + +GS G+ + + + Sbjct: 240 PDAIEDEFRAALARKQGQERDRGTTLVGPQRDELVFRLDDLEVR-RYGSQGQHRTFAMAL 298 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL 358 LA + P+LLLD+ LD ++ ++ +D Q +T T + F Sbjct: 299 KLAQYFYLQQRNDTEPLLLLDDAFGKLDAERTGVFLDLLRSDAVGQSLVTATRRGPF--- 355 Query: 359 NETAKFMRISNHQALCI 375 E A ++H+AL + Sbjct: 356 -EPALNAEPASHRALQV 371 >gi|218708100|ref|YP_002415721.1| recombination protein F [Vibrio splendidus LGP32] gi|254790499|sp|B7VGI6|RECF_VIBSL RecName: Full=DNA replication and repair protein recF gi|218321119|emb|CAV17069.1| DNA replication and repair protein recF [Vibrio splendidus LGP32] Length = 359 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 76/365 (20%), Positives = 154/365 (42%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN + + + +G NG GKT++LEA+ L GR F+ + + + Sbjct: 6 LIVKQFRNIEACDIQPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLSGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F V G +D + I + + D + ++I+ + + +L + L + + Sbjct: 66 SELF-----VHGRFMTSDQFELPIGINKQRDGTTE-VKISGQTGQKLAQLAQVLPLQLIH 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P + + RR F+D VF + +RL + RN LL T ++ S Sbjct: 120 PEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE--LSY 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++A L I+ R + L + E + P ++ + + D Sbjct: 178 WDQELARLAESISQWRATYVEQLKE-VAEEICATFLPEFEIKINYYRGWDKDTP------ 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 YA+ L + D T GP+++DL + + S G+ K+++ + +A + Sbjct: 231 -YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + +Q+F++ T + D +E ++ Sbjct: 289 HLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSRM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|886327|gb|AAB53143.1| single-stranded DNA binding protein [Mycobacterium leprae] Length = 223 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 18/222 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + +FR++ + L + T+F G NG GKTN++EA+ + + R + + R Sbjct: 3 VRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPLIR 62 Query: 67 IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G+ + ST EG E +I LE R+ R ++N ++R + E+ LR Sbjct: 63 AGTIRAIVSTIVVNEGRE----CAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVLF 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------E 175 P + G RRR+LD + P D+++++R R LL + Sbjct: 118 APEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRTALLKSLAAARYRSDQ 177 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217 G D+ + ++AE G ++ AR++++N L+ + + Q Sbjct: 178 GVLDT--LDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQ 217 >gi|332668536|ref|YP_004451543.1| DNA replication and repair protein RecF [Cellulomonas fimi ATCC 484] gi|332337573|gb|AEE44156.1| DNA replication and repair protein RecF [Cellulomonas fimi ATCC 484] Length = 423 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 3/169 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++++FR+YA + L D T VG NG GKTN++EA+ +++ R S A + R Sbjct: 3 VAHLSLTDFRSYAQVELPLDPGITALVGPNGQGKTNLVEAVGYVATLGSHRVPSDAALVR 62 Query: 67 IGSPSFFSTFARVEGME-GLADIS-IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ V +E G + +++E ++ R R D L LR Sbjct: 63 AGASRAVVRTRVVRELEPGRPRTTLVEVEVTPGKANRARVNGGSPGRARDVLGI-LRTVL 121 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 P + G RRRFLD ++ + PR+ + D+ER++R R+ LL Sbjct: 122 FAPEDLALVKGDPDGRRRFLDDLLVQLVPRYAGTVQDYERVLRQRSALL 170 >gi|167470927|ref|ZP_02335631.1| recombination protein F [Yersinia pestis FV-1] Length = 221 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 72/166 (43%), Gaps = 4/166 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN S L A VG NG GKT++LEA+ L GR FR V R Sbjct: 6 LLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHEC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F RV+ E A + + + D VR I+ V EL + L + + P Sbjct: 66 AEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQLITPEG 121 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + +G RR FLD F +P + +RL++ RN L + Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ 167 >gi|86610145|ref|YP_478907.1| recombination protein F [Synechococcus sp. JA-2-3B'a(2-13)] gi|97181049|sp|Q2JIB8|RECF_SYNJB RecName: Full=DNA replication and repair protein recF gi|86558687|gb|ABD03644.1| DNA replication and repair protein RecF [Synechococcus sp. JA-2-3B'a(2-13)] Length = 380 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 77/306 (25%), Positives = 136/306 (44%), Gaps = 30/306 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ FRNY + FDA TI VG+N GKTN+LEA+ L+ R RRAS Sbjct: 3 LRSLHLRHFRNYRDQEITFDAPKTILVGENAQGKTNLLEAVELLATLRS-RRASRDRELV 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 A VE + ++ ++L + RS++ V+ R D L + + Sbjct: 62 YQEERQAQIAATVERLGVAHELVMELRSSGRRSLKV--DGQVLRRQADFLGQVNAV---- 115 Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 +FS L +E RR +LD ++ ++P + + + +++R RN LL + Sbjct: 116 -----VFSSLDLELVRGGPEARRNWLDGVLLQLEPAYLGLVEQYRQILRQRNALLKQDPA 170 Query: 179 DS----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + S +AQ+A G +I R ++ L L + + + L+LT Sbjct: 171 AAGDKFSQMDFWDAQLATTGSRIMRRRARLLQRLEPLAAHWHRVISGGRETLTLTYRPQV 230 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSR---RTLIGPHRSDLIVDYCDKAITI-AHGSTG 290 + + A+ L + R + +L+GPHR + V+ C + A+GS G Sbjct: 231 PLPDPQASPEVIQAQFLAEIRAKAAAEHSLGSSLVGPHRDE--VELCINGVAARAYGSQG 288 Query: 291 EQKVVL 296 +Q+ ++ Sbjct: 289 QQRTLV 294 >gi|328946933|ref|YP_004364270.1| DNA replication and repair protein RecF [Treponema succinifaciens DSM 2489] gi|328447257|gb|AEB12973.1| DNA replication and repair protein RecF [Treponema succinifaciens DSM 2489] Length = 373 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 81/364 (22%), Positives = 161/364 (44%), Gaps = 42/364 (11%) Query: 7 IKFLNISE--FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + FL++S FRN + + ++ FVG NG GK+N+LE++ + + G FR ++V Sbjct: 1 MPFLSLSPYNFRNLCNENIDLSSKEIYFVGKNGQGKSNLLESLYYSAYGSSFRTHVDSEV 60 Query: 65 TRIGSP--SFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVD-ELNKHL 120 + S F G + I + + ++ + L +I + L H Sbjct: 61 IKKNESEMSLRCLFREENGTSHTTSIILKEKLKKIEKDGKILHDRKELINTMPCVLYSHE 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + + V S +R RR F+D+ + D + M ++R+++ RN L E ++D Sbjct: 121 DLDFAVGSPER--------RRFFIDQSLSMYDVLYIDIMRKYKRILKNRNLSLKEKHYD- 171 Query: 181 SWCSSIEAQMAELGVKINIAR--------------VEMINALSSLIMEYVQKENFPHIKL 226 + + Q+A+ G++I R E + +S + ++Y+ P K Sbjct: 172 -LLETYDFQLAQNGLEIQKKRKDAVFSFNQIFGKLYEQVTGISGVSIKYI-----PSWKN 225 Query: 227 SLTGFLDGKFDQSFCALKE--EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 FD++ ++ +Y K+ R+ + + ++ GPHR D IV + + Sbjct: 226 KSDNLNSPFFDRNIPSVDYVVDYLSKI---REQEKIIGSSISGPHR-DKIVFEKEGIPFV 281 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 STG+++++ + + A T P+LL+D++ LD +KR + ++ + Q Sbjct: 282 PTASTGQKRLIALILRTGQAVFYKQITSRKPVLLMDDVLLELDPEKRQKVTSLLPEY-DQ 340 Query: 345 IFMT 348 +F T Sbjct: 341 LFCT 344 >gi|289642468|ref|ZP_06474613.1| DNA replication and repair protein RecF [Frankia symbiont of Datisca glomerata] gi|289507727|gb|EFD28681.1| DNA replication and repair protein RecF [Frankia symbiont of Datisca glomerata] Length = 469 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 6/170 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++ +FR+Y +L L+ FVG NG GKTN+LEA+ +L+ R AS A + Sbjct: 1 MRLTHLSLVDFRSYPALDLLLAPGVNTFVGSNGQGKTNLLEAVGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ S + AR+ + A + I+ + R +R+ ++N + ++ L + Sbjct: 61 VREGATS-AAVRARIARGDRAALVEIEIIPGRANRA----RLNRAPLARSHDVLGLLVMV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 + P + G RRRFLD ++ A PR + D+++++R R+ LL Sbjct: 116 FFAPEDLALVKGDPAGRRRFLDDLLVARTPRLAGVLADYDKVLRQRSTLL 165 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 3/101 (2%) Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 TL+GPHR +L++ + + S GE + + + LA L+ + P+LLLD++ Sbjct: 361 TLVGPHRDELLLSISGRPAR-GYASHGESWSLALALKLASFELLQDDQ-REPVLLLDDVF 418 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 A LD +R+ L ++ Q+ +T ++ + A+F Sbjct: 419 AELDTHRRDRLAELIRS-AEQVLVTAAVEADVPAALAGARF 458 >gi|297243222|ref|ZP_06927157.1| RecF pathway recombinational DNA repair ATPase [Gardnerella vaginalis AMD] gi|296888756|gb|EFH27493.1| RecF pathway recombinational DNA repair ATPase [Gardnerella vaginalis AMD] Length = 433 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 86/379 (22%), Positives = 163/379 (43%), Gaps = 57/379 (15%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY---------ADVT 65 FR++ + F + G+NG+GKTNI+EA+ G R +S + Sbjct: 11 FRSWNHIICDFKPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPLIKKGYEKSII 70 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL----------QINDVVIRVVDE 115 RI + + + + E L +IS LE+ D++ + IN V + Sbjct: 71 RINTINNEINYKKDETNTDLNNIS-SLESNLDKTTYEIDLYLKGSNRAHINSGKALYVKD 129 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + L I P + G RR F+D+ + P + + + +F+ + + R LL + Sbjct: 130 IIGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLVPNYVQILQEFKHISKQRAALL-K 188 Query: 176 GYFDSSW------CSSIE---AQMAELGVKINIARVEMINALS----SLIMEYVQKENFP 222 D S+ S +E + E G+ + AR E + ++ ++I + +EN Sbjct: 189 NIRDYSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVQIINKYFKNIIKSFTNEENTG 248 Query: 223 HIKLSLTGFLDGKFDQS-----------FCALKEEYAKKLFDGRKMDSMSRR-TLIGPHR 270 I + F + F+++ F + E + +++++G ++R LIGPHR Sbjct: 249 II--YVPSFEEVLFEKNSEENVENKNELFSKISEHF-QRIYEGE----LARGCNLIGPHR 301 Query: 271 SDLIVDYCDKAITIAH-GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 D +D+ I+ S GE + + +A + + PI++LD++ A LDE+ Sbjct: 302 DD--IDFVINNISAKDFASNGESWTIAIASKMALCKALEEKNNNKPIVILDDVFAQLDEN 359 Query: 330 KRNALFRIVTDIGSQIFMT 348 +R + + G Q+F+T Sbjct: 360 RRIRILNFALNQG-QVFIT 377 >gi|91070222|gb|ABE11142.1| putative DNA repair and genetic recombination protein RecF [uncultured Prochlorococcus marinus clone HF10-11H11] Length = 297 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/266 (20%), Positives = 131/266 (49%), Gaps = 22/266 (8%) Query: 105 INDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +N+ +++ E+ ++R + + +D + S S RR ++D++V ++P + + F Sbjct: 28 VNESILKKQSEIKNYIRSVCFCSNDIDIVRSEPSY-RRTWIDKVVSQLEPVYLDLISRFN 86 Query: 164 RLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 RL++ R+ +E + + +E+ ++++I + +++ + Sbjct: 87 RLLKQRSHFWRSESFLKTQSTDIVES----FDIQMSIISTRIFRRRRRALLKIKPYVEYW 142 Query: 223 HIKLSLT------GFLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 H LS + +L G + S + ++ A++L + R +++++ + GPHR Sbjct: 143 HNHLSKSQEQIDINYLSGIQNISPEEEEEEIISKKIAEQLLNQRSIEALTGKCNFGPHRD 202 Query: 272 DLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 D +++ +++ +GS+G+Q+ ++ + +A L++ T PIL+LD++ A LD + Sbjct: 203 D--IEFLINNVSVRKYGSSGQQRTFILALKMAELDLLTKTLNVPPILILDDVLAELDLTR 260 Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFD 356 +N L V SQ F++ T F+ Sbjct: 261 QNLLLNSVGK-DSQCFISATHLDKFN 285 >gi|84394123|ref|ZP_00992857.1| recombination protein F [Vibrio splendidus 12B01] gi|84375269|gb|EAP92182.1| recombination protein F [Vibrio splendidus 12B01] Length = 359 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 75/365 (20%), Positives = 153/365 (41%), Gaps = 22/365 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN + + + +G NG GKT++LEA+ L GR F+ + + + Sbjct: 6 LIVKQFRNIEACDIQPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 F F + E + I + + D + ++I+ + + +L + L + + P Sbjct: 66 SELFVHGRFLTSDQFE----LPIGINKQRDGTTE-VKISGQTGQKLAQLAQVLPLQLIHP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185 + + RR F+D VF + +RL + RN LL Y + S+ Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATNYRELSYW-- 178 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++A L I+ R + L + E + P ++ + + D Sbjct: 179 -DQELARLAESISQWRATYVEQLKE-VAEEICATFLPEFEIKINYYRGWDKDTP------ 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 YA+ L + D T GP+++DL + + S G+ K+++ + +A + Sbjct: 231 -YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ TG I L+D+ ++ LD +R L + +Q+F++ T + D +E ++ Sbjct: 289 HLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSRM 348 Query: 365 MRISN 369 + + Sbjct: 349 FHVEH 353 >gi|294505883|ref|YP_003569941.1| DNA replication and repair protein recF [Salinibacter ruber M8] gi|294342211|emb|CBH22989.1| DNA replication and repair protein recF [Salinibacter ruber M8] Length = 412 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 84/379 (22%), Positives = 156/379 (41%), Gaps = 26/379 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FR +A + G NG GKTN+LEA+ +L + F + R + Sbjct: 6 LRLRSFRAHAESEFDLAPSINLLYGANGAGKTNVLEAVHYLCLTKSFTASRDRYAVRKDA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 P +F R+ G ++++L + + +N + + ++ L + P Sbjct: 66 P-YFEIEGRI-GQVREEPMTVRLAYVPGEG-KSIFVNGAELDRLADIVGTLPVVVFSPED 122 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE-- 187 + +G ERRRF++ ++ + ++ + R R RN +L Y S E Sbjct: 123 YDLTAGGPSERRRFVNNILSQARSVYMETLMKYRRARRQRNEVL-RSYKKRSAPPPDELL 181 Query: 188 ----AQMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLTGFL--DGKFD 237 ++ LG +I R + + A + + E ++ P I+ L D D Sbjct: 182 APWTEKLVGLGSRIVHRRQQFLQAFADDLEEAYRRIDAVAERPTIEYDTIADLAPDATPD 241 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 A + A+K G++ D + TL+GP R +L+ D + +GS G+ + + Sbjct: 242 AIEDAFRAALARK--QGQERDRGT--TLVGPQRDELVFRLDDLEVR-RYGSQGQHRTFAM 296 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFD 356 + LA + P+LLLD+ LD ++ ++ +D Q +T T + F Sbjct: 297 ALKLAQYFYLQQRNDTEPLLLLDDAFGKLDAERTGVFLDLLRSDAVGQSLVTATRRGPF- 355 Query: 357 SLNETAKFMRISNHQALCI 375 E A ++H+AL + Sbjct: 356 ---EPALNAEPASHRALQV 371 >gi|229083318|ref|ZP_04215680.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44] gi|228699993|gb|EEL52616.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44] Length = 245 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 9/205 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 6 LQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + + +++G + S+ LE + + ++N + + + + + + P Sbjct: 63 --WDEDYGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SWCSS 185 + G RRRFLD + I P + + +++++ RN LL + +S + Sbjct: 121 LNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEEAMLDV 180 Query: 186 IEAQMAELGVKINIARVEMINALSS 210 Q+ E G KI R E ++ L Sbjct: 181 FTIQLIEHGAKILRKRFEFLHLLQE 205 >gi|123969312|ref|YP_001010170.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. AS9601] gi|123199422|gb|ABM71063.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. AS9601] Length = 297 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/270 (20%), Positives = 130/270 (48%), Gaps = 23/270 (8%) Query: 105 INDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +N+ +++ E+ ++R + + +D + S S RR ++D++V ++P + + F Sbjct: 28 VNETILKKQSEIKNYIRSVCFCSNDIDIVRSEPSY-RRIWIDKVVSQLEPVYLDLISRFN 86 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R+++ R+ F + S I + ++++I + +++ + H Sbjct: 87 RILKQRSHFWRSESFLKTQSSDI---VESFDIQMSIISTRIFRRRRRALLKIKPYVEYWH 143 Query: 224 IKLSLT------GFLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 LS + +L G + S + ++ ++L + R +++++ + GPHR D Sbjct: 144 NHLSKSKEQIDINYLSGIQNISPEEEEEEVISKKIVEQLLNQRSIEALTGKCNFGPHRDD 203 Query: 273 LIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 V++ +++ +GS+G+Q+ ++ + +A L++ T PIL+LD++ A LD ++ Sbjct: 204 --VEFLINNVSVRKYGSSGQQRTFILALKMAELDLLTKTLNVPPILILDDVLAELDLTRQ 261 Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 N L V SQ F++ T D N++ Sbjct: 262 NLLLNSVGK-DSQCFISATH---LDKFNQS 287 >gi|126697102|ref|YP_001091988.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9301] gi|126544145|gb|ABO18387.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9301] Length = 265 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/230 (21%), Positives = 112/230 (48%), Gaps = 20/230 (8%) Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKIN 198 RR ++D++V ++P + + F RL++ R+ +E + + +E+ ++++ Sbjct: 31 RRTWIDKVVSQLEPVYLDLISRFNRLLKQRSHFWRSESFLKTQSTDIVES----FDIQMS 86 Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLT------GFLDGKFDQS-----FCALKEEY 247 I + +++ + H LS + +L G + S + ++ Sbjct: 87 IISTRIFRRRRRALLKIKPYVEYWHNHLSKSQEQIDINYLSGIQNISPEEEEEEVISKKI 146 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARL 306 A +L + R +++++ + GPHR D +++ +++ +GS+G+Q+ ++ + +A L Sbjct: 147 ADQLLNQRSIEALTGKCNFGPHRDD--IEFLINNVSVRKYGSSGQQRTFILALKMAELDL 204 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 ++ T PIL+LD++ A LD ++N L V SQ F++ T F+ Sbjct: 205 LNKTLNIPPILILDDVLAELDLTRQNLLLNSVGK-DSQCFISATHLDKFN 253 >gi|326772841|ref|ZP_08232125.1| RecF protein [Actinomyces viscosus C505] gi|326637473|gb|EGE38375.1| RecF protein [Actinomyces viscosus C505] Length = 405 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 93/400 (23%), Positives = 164/400 (41%), Gaps = 58/400 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +FR+Y SL L + + FVG NG GKTN++EAI +L+ R + + R Sbjct: 3 VSDLSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTALVR 62 Query: 67 IGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 +P R + G +++E ++ R ++N R D L LR Sbjct: 63 RAAPGQAQPAGAVVRARAVHGERPSVLEIEIIAGKANRA-RLNRGGCRPRDLLGV-LRAV 120 Query: 124 WLVP---SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 P S+ R G+ RR FLD +V + P + ++++ R LL Sbjct: 121 VFAPEDLSLVRAEPGV---RRGFLDDLVVTLRPGLAGVRAEHDKILAQRASLLKSA---R 174 Query: 181 SWCSSIEAQMAELGV---------------KINIAR---------VEMINAL-------- 208 + SSI + ++ L V ++++ R E ++ Sbjct: 175 AARSSISSMLSTLEVWDAQLAAAAARLIAARVDVVRRLRPWVASAYETVSGTSGQRSRAQ 234 Query: 209 ----SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 SSL+ E PH + + + D++ A + E A R++D + Sbjct: 235 LAYRSSLLTHEGHPEPDPHDESAWLAGEETLLDEAALAARLESAMGELHAREIDRGA--N 292 Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFA----PILLL 319 L+G HR DL + + S GEQ + + + LA ++ ++ + P+L+L Sbjct: 293 LVGAHRDDLSL-FLTGLPARGFASHGEQWSLALALRLASYDMLRTDIDAYGGDGEPVLIL 351 Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 D++ A LDE +R AL ++V + D V L+ Sbjct: 352 DDVFASLDEQRRRALAQMVAGAQQVLLTAAVDDDVPAELS 391 >gi|227876544|ref|ZP_03994655.1| recombination protein F [Mobiluncus mulieris ATCC 35243] gi|227842858|gb|EEJ53056.1| recombination protein F [Mobiluncus mulieris ATCC 35243] Length = 436 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 93/382 (24%), Positives = 154/382 (40%), Gaps = 49/382 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FR+Y L + + +F+G NG GKTN++EA+++L+ R + A + G+ Sbjct: 6 LALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAALIFRGT 65 Query: 70 PSFFSTF----ARVEG---MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 P ARV E +D+ +++E ++ R + +N +R D L HL Sbjct: 66 PEETPHAGIIRARVSPGITPEPRSDL-LEIEIVSGKANRAM-LNRHKVRPRD-LVGHLST 122 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GY 177 P + SG RR FLDR+ + P D + +R R L + Sbjct: 123 VLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVARRHEV 182 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQ-KENFPHI----------- 224 D + + L K+ +R ++ L L+ Y Q PH Sbjct: 183 LDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQAPHESETNPNEATPT 242 Query: 225 -------------KLSLTGFLDGKFDQ---SFCALKEEYAKKLFDGRKMDSMSRR-TLIG 267 +S T +D Q + A+ E + R +D R L G Sbjct: 243 AENPVTARMTYRDNVSKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRGVNLCG 302 Query: 268 PHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 HR DL ++C + + S GE + + LA L+ G AP+LLLD++ A L Sbjct: 303 THRDDL--EFCLHDFPVKGYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDVFAEL 360 Query: 327 DEDKRNALFRIVTDIGSQIFMT 348 D +R A+ + + Q+++T Sbjct: 361 DSHRRAAILGAI-EAADQVWIT 381 >gi|306817505|ref|ZP_07451249.1| recombination protein F [Mobiluncus mulieris ATCC 35239] gi|304649729|gb|EFM47010.1| recombination protein F [Mobiluncus mulieris ATCC 35239] Length = 436 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 93/382 (24%), Positives = 154/382 (40%), Gaps = 49/382 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FR+Y L + + +F+G NG GKTN++EA+++L+ R + A + G+ Sbjct: 6 LALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAALIFRGN 65 Query: 70 PSFFSTF----ARVEG---MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 P ARV E +D+ +++E ++ R + +N +R D L HL Sbjct: 66 PEETPHAGIIRARVSPGITPEPRSDL-LEIEIVSGKANRAM-LNRHKVRPRD-LVGHLST 122 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GY 177 P + SG RR FLDR+ + P D + +R R L + Sbjct: 123 VLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVARRHEV 182 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQ-KENFPHI----------- 224 D + + L K+ +R ++ L L+ Y Q PH Sbjct: 183 LDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQAPHESETNPNEATPT 242 Query: 225 -------------KLSLTGFLDGKFDQ---SFCALKEEYAKKLFDGRKMDSMSRR-TLIG 267 +S T +D Q + A+ E + R +D R L G Sbjct: 243 AENPATARMTYRDNISKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRGVNLCG 302 Query: 268 PHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 HR DL ++C + + S GE + + LA L+ G AP+LLLD++ A L Sbjct: 303 THRDDL--EFCLHDFPVKGYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDVFAEL 360 Query: 327 DEDKRNALFRIVTDIGSQIFMT 348 D +R A+ + + Q+++T Sbjct: 361 DSHRRAAILGAI-EAADQVWIT 381 >gi|329894832|ref|ZP_08270632.1| DNA recombination and repair protein RecF [gamma proteobacterium IMCC3088] gi|328922726|gb|EGG30060.1| DNA recombination and repair protein RecF [gamma proteobacterium IMCC3088] Length = 428 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 101/406 (24%), Positives = 170/406 (41%), Gaps = 78/406 (19%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD--VTRI 67 + I+ RN A + + +F+GDNGVGKT++LEAI L GR FR+ + R Sbjct: 5 IQIANLRNIAMQEIGDLSPVNVFLGDNGVGKTSVLEAIHTLGYGRSFRKQGGQKDALVRY 64 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-LNKHLRISWLV 126 G V G G + + + D+ I++ E L + +++ + Sbjct: 65 GCERLVVFGESVMGGSGSVRGDGQALGVERMGLSRAANGDIQIKINGEKLQRLSEMAFRL 124 Query: 127 PSMD------RIFSGLSMERRRFLDRMVFAIDPRHR-----------------RRMIDFE 163 P++ + +G + ERRR+LD VF ++ R RR+ + Sbjct: 125 PTIAVNSDTFDLLTGGAAERRRYLDWAVFHVEHGFRDVSKRYANALQQRNSILRRIANQM 184 Query: 164 RLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 RL +N + + S+W ++ A LG ++ R L L + +++ Sbjct: 185 RLANPKNSSIDHDPHELSTWTQAVSA----LGAQVGEYREAQFLVLRDLFEDMLRELGGG 240 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIV----DY 277 + + L G+ G + Q A+ L G+ D MSR T GPHR+D+ V D Sbjct: 241 ALGVKL-GYRSG-WGQGVA-----LAEALEQGQISD-MSRGFTQFGPHRADIQVVVGKDV 292 Query: 278 CDKAITIAHG--STGEQKVVLVGIFLAHAR--LISNTTG-------------------FA 314 +A +A S G+ K+V++ + LA R L + + G A Sbjct: 293 AGQA-RLARDVLSRGQLKLVVLAMKLAQVRFFLHAGSAGTLASKGARTEAGRDPQVQALA 351 Query: 315 PI------LLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGT 350 P +LLD+I+A D + AL R++ ++ G Q+F T T Sbjct: 352 PAAGNTLSVLLDDIAAEFDRPRVVALGRLLAEMIMQGGVQVFATST 397 >gi|324999885|ref|ZP_08120997.1| recombination protein F [Pseudonocardia sp. P1] Length = 398 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 4/167 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ +++FR++ L D T+ VG NGVGKTN++E I +L+ R +S + R Sbjct: 3 LRRFAVTDFRSWPEAELELDPGVTVLVGSNGVGKTNLVEGIGYLASLGSHRVSSDTPLIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ R E + ++LE + R V R D L LR Sbjct: 63 RGA---EQAVLRGEVHHHGRKLGVELEINSGKQNRARVNRSPVSRPRDVLGI-LRSVLFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 P + G ERRRFLD ++ A PR+ D+E+++R R+ LL Sbjct: 119 PEDLALVRGDPSERRRFLDELLVARFPRYAGVRSDYEKVLRQRSALL 165 Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 L+GPHR +L + D + S GE + + LA RL+ P+L+LD++ A Sbjct: 283 LVGPHRDELDLALGDGPAK-GYASHGESWAFALALRLASYRLL-QADDVEPVLVLDDVFA 340 Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGT 350 LD +R AL +V D Q+ +T Sbjct: 341 ELDSARRRALAGLVAD-AEQVLVTAA 365 >gi|23465220|ref|NP_695823.1| recombination protein RecF [Bifidobacterium longum NCC2705] gi|189440296|ref|YP_001955377.1| recombinational DNA repair ATPase [Bifidobacterium longum DJO10A] gi|322690196|ref|YP_004219766.1| recombination protein RecF [Bifidobacterium longum subsp. longum JCM 1217] gi|23325848|gb|AAN24459.1| recombination protein RecF [Bifidobacterium longum NCC2705] gi|189428731|gb|ACD98879.1| Recombinational DNA repair ATPase [Bifidobacterium longum DJO10A] gi|320455052|dbj|BAJ65674.1| recombination protein RecF [Bifidobacterium longum subsp. longum JCM 1217] Length = 395 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 76/330 (23%), Positives = 135/330 (40%), Gaps = 44/330 (13%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG--SPSFFSTFARVEGMEGLADI 88 I G NG+GKTN++EA+ LS G R +S + G + + + A G + Sbjct: 10 ILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPLIERGQTTATIRANVADDAGQTTTYEA 69 Query: 89 SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148 SI R R + + +R D + K +S+ P R+ SG RR +++ Sbjct: 70 SI--HARGANRARINSGSSLYLR--DIIGKIPSVSF-TPEDQRLVSGDPGARRTMMNQAA 124 Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTE-------GYFDSSWCSSIE---AQMAELGVKIN 198 ++P + + + F R+ + R LL + G + S +E Q E GV + Sbjct: 125 ALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNNGQPMDAVLSGLEIWTGQFIEAGVALT 184 Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-------------KFDQSFCALKE 245 R +I L+ E F I L G + FD + E Sbjct: 185 RMRAHVIGLLA---------EPFAAIYADLAGAGEQVTLTYAPSFDEVLMFDDPHPQISE 235 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 + ++++ G ++ LIGP R D+ ++ S GE + + + +A Sbjct: 236 HF-QRIYPGEVARGVN---LIGPQRDDMNLELGGIPAR-EFASNGEMWTMALALKMALFE 290 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALF 335 ++ + G PI++LD++ A LD+ +R + Sbjct: 291 IVRDRLGLQPIVILDDVFAQLDDSRRTQIL 320 >gi|282852317|ref|ZP_06261659.1| DNA replication and repair protein RecF [Lactobacillus gasseri 224-1] gi|282556059|gb|EFB61679.1| DNA replication and repair protein RecF [Lactobacillus gasseri 224-1] Length = 177 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + +FRN+ L+ FD IF+G N GKTN+LEAI FL+ R R S ++ R G Sbjct: 8 LKDFRNFKELKTDFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 S FA ++G + + ++L+ R + + +N + + + + P Sbjct: 65 --SKFAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKKLSAYVGQMNAILFSPEDLA 122 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + G RRRF+D I+ + + ++++ RN L + Sbjct: 123 LVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQ 166 >gi|307699932|ref|ZP_07636983.1| putative DNA replication and repair protein RecF [Mobiluncus mulieris FB024-16] gi|307614970|gb|EFN94188.1| putative DNA replication and repair protein RecF [Mobiluncus mulieris FB024-16] Length = 436 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 93/382 (24%), Positives = 153/382 (40%), Gaps = 49/382 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FR+Y L + + +F+G NG GKTN++EA+++L+ R + A + G+ Sbjct: 6 LALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAALIFRGN 65 Query: 70 PSFFSTF----ARVEG---MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 P ARV E +D+ +++E + R + +N +R D L HL Sbjct: 66 PEETPHAGIIRARVSPGITPEPRSDL-LEIEIVSGKPNRAM-LNRHKVRPRD-LVGHLST 122 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GY 177 P + SG RR FLDR+ + P D + +R R L + Sbjct: 123 VLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVARRHEV 182 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQ-KENFPHI----------- 224 D + + L K+ +R ++ L L+ Y Q PH Sbjct: 183 LDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQAPHESETNPNEATPT 242 Query: 225 -------------KLSLTGFLDGKFDQ---SFCALKEEYAKKLFDGRKMDSMSRR-TLIG 267 +S T +D Q + A+ E + R +D R L G Sbjct: 243 AENPVTARMTYRDNVSKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRGVNLCG 302 Query: 268 PHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 HR DL ++C + + S GE + + LA L+ G AP+LLLD++ A L Sbjct: 303 THRDDL--EFCLHDFPVKGYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDVFAEL 360 Query: 327 DEDKRNALFRIVTDIGSQIFMT 348 D +R A+ + + Q+++T Sbjct: 361 DSHRRAAILGAI-EAADQVWIT 381 >gi|78185501|ref|YP_377936.1| recombination protein F [Synechococcus sp. CC9902] gi|78169795|gb|ABB26892.1| DNA replication and repair protein RecF [Synechococcus sp. CC9902] Length = 353 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 129/293 (44%), Gaps = 18/293 (6%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90 + +G NG+GK+N+LEA+ L R R + D+ + SP A + G D + Sbjct: 9 LVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWDSP-----MALLRADVGDGD-RL 62 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150 +LE R + + V+ R +D + I + +D + G RR++LDR+V Sbjct: 63 ELELRRRGGRQARRNGKVLDRQLDLIGPLRCIGFSALDLD-LVRGEPALRRQWLDRVVLQ 121 Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI----EAQMAELGVKINIARVEMIN 206 ++P + + + RL+R R++L +++ S + + QMA + +I+ R + Sbjct: 122 LEPVYADLISRYNRLLRQRSQLWRSHRLNTAERSGLLDAFDVQMALISTRIHRRRRRALQ 181 Query: 207 ALSSLIMEYVQK----ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 L + + + + LDG+ + L E ++L D R+ + Sbjct: 182 RLEPIAQHWQSHLSSGKELLQLHYQPGSRLDGEEAEEPWRLAIE--EQLRDQREDEERLG 239 Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315 IGPHR D I + GS G+Q+ +++G+ LA L+ G P Sbjct: 240 NCRIGPHR-DEINMVLGETPARRFGSAGQQRSLVLGLKLAELELVKELCGEPP 291 >gi|33862129|ref|NP_893690.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634347|emb|CAE20032.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 323 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/274 (22%), Positives = 125/274 (45%), Gaps = 25/274 (9%) Query: 98 RSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157 + + + +ND +++ E+ ++R + I RR ++D++V ++P + Sbjct: 48 KGAKKIYVNDSLLKKQTEIQNYIRSVCFCSNDIYIVKSEPGFRRSWIDKVVSQLEPVYVE 107 Query: 158 RMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213 + F RL++ R F S S + QM+ + +I R + S I Sbjct: 108 LIHRFNRLLKQRTHFWRSESFQKDIYSEVIESFDIQMSLISTRIFRRRRRAL----SKIK 163 Query: 214 EYVQKENFPHIKLS----------LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 YV+ + H LS L+G + ++ + ++ ++L R +++++ + Sbjct: 164 PYVE---YWHNHLSKSKEQIGINYLSGLENINQEEEEEVISKKILEQLQKQRPLEAVTGK 220 Query: 264 TLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322 GPHR D +++ I+I +GS+G+Q+ ++ + +A L+ N PIL+LD++ Sbjct: 221 CNFGPHRDD--IEFLINNISIRKYGSSGQQRTFILALKMAELDLLRNMIDLPPILILDDV 278 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 A LD ++N L V SQ ++ T F+ Sbjct: 279 LAELDITRQNLLLNSVGK-DSQCLISATHLDKFN 311 >gi|110832864|ref|YP_691723.1| DNA replication and repair protein RecF [Alcanivorax borkumensis SK2] gi|110645975|emb|CAL15451.1| DNA replication and repair protein RecF [Alcanivorax borkumensis SK2] Length = 332 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 72/308 (23%), Positives = 135/308 (43%), Gaps = 36/308 (11%) Query: 74 STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133 + +A V G++ + I I+ R + ++++ + + E+ L + L P+ + Sbjct: 32 TLYAEVVGVQDVHRIGIR---RTPGGIDAIKLDGQTPKALSEVAVLLPVLALHPTSVELV 88 Query: 134 SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 G S RRRF+D +F ++ + ++ RN LL G + Q+++ Sbjct: 89 FGASQLRRRFMDWGMFHVEHQFMPVWRAGSAALKQRNALLRAGNPNLRELGFWNQQLSQT 148 Query: 194 GVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGK-FDQSFCALKEEYAK 249 +I R +NAL + E + P +K+ L TG G+ + Q+ L+ + + Sbjct: 149 SDRIEGLRRGYLNALQRGLDEALTVLA-PELKIRLRLQTGLHKGESYAQALSRLQSDDLR 207 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-------STGEQKVVLVGIFLA 302 + F + G HRSD+ ++ +HG S G+ K+V G+ LA Sbjct: 208 RGF-----------SQAGFHRSDIRIE--------SHGVVARDRLSRGQAKLVAYGLVLA 248 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NET 361 +IS + G LL+D+++A LDE+ RN L + G Q +T D + ++ N+ Sbjct: 249 QLPMISQS-GKVCTLLVDDLAAELDEEHRNQLLGYLATTGHQTLITALDMPQWAAIVNDN 307 Query: 362 AKFMRISN 369 + N Sbjct: 308 DALQSVEN 315 >gi|260434638|ref|ZP_05788608.1| DNA replication and repair protein RecF [Synechococcus sp. WH 8109] gi|260412512|gb|EEX05808.1| DNA replication and repair protein RecF [Synechococcus sp. WH 8109] Length = 345 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 22/295 (7%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90 + +G NG+GK+N+LEA+ L R R ++ D+ + +P A V G + L + Sbjct: 1 MVIGPNGIGKSNLLEAVELLGSLRSHRCSNDRDLIQWDAPEAL-IRADVGGGDRL---EL 56 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150 KL R + + ++ R +D + I + +D + G RR++LDR+V Sbjct: 57 KLRRHGGRQAK--RNGKLLDRQLDLIGPLRCIGFSALDLD-LVRGEPALRRQWLDRVVLQ 113 Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SWCSSIEAQMAELGVKINIARVEMIN 206 ++P + M RL+R R++L + S + + + QMA + +I+ R ++ Sbjct: 114 LEPVYADLMARLNRLLRQRSQLWRQRQVSSGERHALLDAFDVQMALVSTRIHRRRQRALH 173 Query: 207 ALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFC--ALKEEYAKKLFDGRKMDSM 260 L + + + L L LDG+ + A++E+ ++ + ++ S Sbjct: 174 RLEPIAQRWQAHLSGGTEALELHYKPGSKLDGEDAEEPWRLAIEEQLRQQRGEEERLGSC 233 Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315 +GPHR D I + GS G+Q+ +++G+ LA L++ G P Sbjct: 234 R----VGPHR-DEIALLLGGSPARQFGSAGQQRSLVLGLKLAELELVTQLCGEPP 283 >gi|260912286|ref|ZP_05918837.1| recombination protein F [Prevotella sp. oral taxon 472 str. F0295] gi|260633587|gb|EEX51726.1| recombination protein F [Prevotella sp. oral taxon 472 str. F0295] Length = 371 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 156/370 (42%), Gaps = 51/370 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--- 66 ++I ++N ++ L + F+G NG GKTN L+A+ +LS F R++Y + Sbjct: 6 ISIINYKNLRAVNLQLSPKTNCFIGHNGSGKTNFLDALYYLS----FCRSAYNPIDSQLI 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDELN 117 FF +EG + L+++ D +V C + N + L+ Sbjct: 62 THEQDFFV----IEG-DYLSEVG------DTENVYCGMKRGAKKQFKRNK---KTYKRLS 107 Query: 118 KHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173 +H+ + LV P+ + G S ERRR +D ++ D + + + ++ RN LL Sbjct: 108 QHIGLIPLVLVSPADAALIDGGSEERRRLMDMVIAQYDTTYIEALTRCNKALQQRNALLR 167 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 E D + E +MA G + + R + + ++ + ++SL Sbjct: 168 MEAEPDLALLELWEEEMAAQGEVVYVKRAAFVEEFIPVFQNIHERISGGSEQVSLRYI-- 225 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 S C + + + + R D +L G HR DL + D GS G+ K Sbjct: 226 -----SHCQ-RGDLLEVIRKDRHKDRAVGYSLHGVHRDDLEM-LIDGYQLKREGSQGQSK 278 Query: 294 VVLVGIFLAH----ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMT 348 + + LA R S TT P+LLLD+I LD + + +V+ D QIF+T Sbjct: 279 TYALAMKLAQFDFLKRTASKTT---PLLLLDDIFDKLDSQRVERIVELVSGDSYGQIFIT 335 Query: 349 GTDKSVFDSL 358 T++ D + Sbjct: 336 DTNREHLDRI 345 >gi|288928367|ref|ZP_06422214.1| RecF protein [Prevotella sp. oral taxon 317 str. F0108] gi|288331201|gb|EFC69785.1| RecF protein [Prevotella sp. oral taxon 317 str. F0108] Length = 371 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 86/373 (23%), Positives = 154/373 (41%), Gaps = 49/373 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--- 66 ++I ++N ++ L + F+G NG GKTN L+A+ +LS F R++Y + Sbjct: 6 ISIINYKNLRAVNLQLSPKTNCFIGHNGSGKTNFLDALYYLS----FCRSAYNPIDSQLI 61 Query: 67 -------IGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 + + S E + G+ S K R+ ++ + L++ Sbjct: 62 THEQDFFVLEGDYISEGGDAENVYCGMKRGSKKQFKRNKKAYK-------------RLSQ 108 Query: 119 HLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174 H+ + LV P+ + G S ERRR +D ++ D + + + ++ RN LL Sbjct: 109 HIGLIPLVLVSPADAALIDGGSEERRRLMDMVIAQYDTTYIEALTRCNKALQQRNALLRM 168 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 E D + E +MA G + R + + ++ + ++SL G Sbjct: 169 EAEPDLALLELWEEEMAAQGKVVYAKRAAFVEEFIPVFQSIHERISGGSERVSLRYISHG 228 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + ++++ R D +L G HR DL + D GS G+ K Sbjct: 229 QRGDLLDVIRKD--------RHKDRAVGYSLHGVHRDDLEM-LIDGYQLKREGSQGQSKT 279 Query: 295 VLVGIFLAH----ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTG 349 + + LA R S TT P+LLLD+I LD + + +V+ D QIF+T Sbjct: 280 YALAMKLAQFDFLKRTASKTT---PLLLLDDIFDKLDSQRVERIVELVSGDSYGQIFITD 336 Query: 350 TDKSVFDSLNETA 362 T++ D + ++ Sbjct: 337 TNREHLDRILQSG 349 >gi|330721226|gb|EGG99329.1| DNA recombination and repair protein RecF [gamma proteobacterium IMCC2047] Length = 145 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 T GPHR+DL V Y + S G+QK+V+ + +A L S +TG I LLD+++ Sbjct: 35 TQAGPHRADLRVRYLGQNAADLL-SRGQQKLVICALKIAQGYLFSKSTGRTCIYLLDDLA 93 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 A LD+ R L ++++ + Q+F+T D+ +F Sbjct: 94 AELDQVFRERLCKLLSTLDCQLFITSVDEQLF 125 >gi|148927257|ref|ZP_01810828.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] gi|147887343|gb|EDK72796.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] Length = 309 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 7/226 (3%) Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P R+ G RR F+D ++ ++P + + ++R+++ RN LL + Sbjct: 74 PGDLRLLHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVW 133 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++E G +I R + L++ + E + H K ++ L F + ++++ Sbjct: 134 DVALSEYGARIVAERQKYSALLNASLRE--RYRAIAHTKDIVS--LAYSFQEXAESVQQA 189 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHAR 305 L D T +GPHR DLI D +A +IA S GE + +++ + Sbjct: 190 MVSALHAHHVRDKALGYTTVGPHRHDLIFSMNDVEATSIA--SRGETRSIVLALKFIEVE 247 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 ++ P+LLLD++ + LD +R AL + + + I T D Sbjct: 248 MLRVYRDQPPLLLLDDVFSELDSTRRMALVEVGSSTQTVITTTNAD 293 >gi|318042584|ref|ZP_07974540.1| recombination protein F [Synechococcus sp. CB0101] Length = 344 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 86/341 (25%), Positives = 157/341 (46%), Gaps = 32/341 (9%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90 + +G NG GK+N+LEA+ L R R +S D+ R G + + EG + + Sbjct: 2 LVIGRNGEGKSNLLEAVELLGSLRSHRCSSDRDLIRQGERQALISAS----CEGGDLLEL 57 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME--------RRR 142 +L + R R N V+ EL LR FS L +E RR+ Sbjct: 58 ELRLQGGRQAR---RNGKVLERQHELIGPLRCV--------GFSALDLELVRGEPALRRQ 106 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA---QMAELGVKINI 199 +LDR+V ++P + + + RL+R R++LL G +EA QMA +G +++ Sbjct: 107 WLDRVVLQLEPVYAELLSRYGRLLRQRSQLLRRGLGAGMQPELLEAFDQQMALIGTRLHR 166 Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSFCALKEEYAKKLFDGRK 256 R+ + L L + ++ + +L L + G + +++ ++ ++L R Sbjct: 167 RRLRALRRLQPLAAAWQERLSGGREQLQLR-YRPGSQLEGEEAEGPWRDALLEQLRQQRP 225 Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316 + + +GPHR ++ ++ D+ +GS G+Q+ +++ + LA L+ G P+ Sbjct: 226 EELRLGQCSVGPHRDEVALELGDQPAR-RYGSAGQQRTLVLALKLAELELVHQLWGEPPL 284 Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 LLLD++ A LD ++ L V + G Q ++ T F Sbjct: 285 LLLDDVLAELDPGRQQLLLEAVGE-GHQCLVSATHLGAFSG 324 >gi|37521974|ref|NP_925351.1| recombination protein F [Gloeobacter violaceus PCC 7421] gi|51316323|sp|Q7NHY0|RECF_GLOVI RecName: Full=DNA replication and repair protein recF gi|35212973|dbj|BAC90346.1| DNA repair and genetic recombination protein [Gloeobacter violaceus PCC 7421] Length = 375 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 163/364 (44%), Gaps = 27/364 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + + +FRNYA L + TI VGDN GK+N+LEA+ L+ GR R ++ Sbjct: 3 LRSVQLHDFRNYAEADLELTSPKTILVGDNAQGKSNLLEAVQLLATGRSTRALRDRELIA 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR-ISWL 125 G A VE + ++ + L R+VR + R E +L +S+ Sbjct: 63 RGKEQ-ARVAATVERLGDTVELEMILRAGKRRTVR---VGGETRRTQVEALGYLHCVSFS 118 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFD--SS 181 +D + G RR +LD ++ ++P + + F + + RN LL TE D + Sbjct: 119 SLDLD-LVRGAPETRRDWLDGILLQLEPVYTNVLAQFVQALHQRNALLRSTELSPDALAE 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFP---HIKLSLTGFLD 233 + + + R +I L+ L + +E F ++S Sbjct: 178 QLPCWDDLLVRAATPVMRRRHRLIERLAPLARRWHGSISGGRETFAVRYQPQISFEQEDA 237 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 Q+ L +E K+ +GR+ S L+GPHR ++ + D+ GS G+Q+ Sbjct: 238 QSVQQALQELLKE--KRTLEGRRGTS-----LVGPHRDEVDLS-IDEIPARQFGSQGQQR 289 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 +++ + LA L+ TG P+LLLD++ A LD +++ L + + Q +T T S Sbjct: 290 TLVLALKLAELELLEQVTGEVPLLLLDDVLAELDLHRQDQLLGAIQE-RVQTIVTTTHLS 348 Query: 354 VFDS 357 +FDS Sbjct: 349 LFDS 352 >gi|261416459|ref|YP_003250142.1| DNA replication and repair protein RecF [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372915|gb|ACX75660.1| DNA replication and repair protein RecF [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327022|gb|ADL26223.1| putative DNA replication and repair protein recF [Fibrobacter succinogenes subsp. succinogenes S85] Length = 419 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 90/407 (22%), Positives = 151/407 (37%), Gaps = 83/407 (20%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 IS+ R+ S+ F+ + G NG GKT ILE+I L+ G FR ++ Sbjct: 7 ISKMRSLESMDCNFEPGINVICGPNGCGKTTILESIYLLAQGFSFRSHELRELITWKQNE 66 Query: 72 F-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F R E M L S E R+ N ++ + Sbjct: 67 LILRGEFYDEGR-ERMRALRVFSRGSEVRE---------NGETLKSPAAFFGTCPAVIMQ 116 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GYFDS 180 PS + G RRR+LD ++ + + ++ R+++ RN+ L E Sbjct: 117 PSDIELLRGGPDVRRRWLDEILCFRSSANSLALRNYRRVLQQRNKWLKEFKQKGFAVGGE 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---------------------- 218 + Q+ +LG K+ AR+ + +S +I Y +K Sbjct: 177 DLFRVLTLQLIDLGAKVWAARLALSKEVSEIITRYYRKLSGGVDEITCAYKSSILKTLDA 236 Query: 219 ---------ENFPHIKLSLTGFLDG--KFDQSFCA------------------------- 242 E I TG +G + + CA Sbjct: 237 LDAADPLSDEMMDEIPSGATGAAEGVVEIARGECAECSADGSGNVAGSAADGSDVVSEEM 296 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFL 301 L+ +A+KL D ++ + T+ GPHR DL + C + + GS G+ + V + Sbjct: 297 LRNAFARKLADLEFVERLQGMTMAGPHRDDLAL--CASGYEMRSVGSQGQCRSAAVAMRF 354 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 A + S PILLLD+I A LD ++R+A+ ++ + Q+ + Sbjct: 355 AAVDVASRYL-TKPILLLDDIFAELDVNRRDAVASLIREKECQVVIA 400 >gi|269977744|ref|ZP_06184704.1| DNA replication and repair protein RecF [Mobiluncus mulieris 28-1] gi|269934048|gb|EEZ90622.1| DNA replication and repair protein RecF [Mobiluncus mulieris 28-1] Length = 436 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 92/382 (24%), Positives = 152/382 (39%), Gaps = 49/382 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + FR+Y L + + +F+G NG GKTN++EA+++L+ R + A + G+ Sbjct: 6 LALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAALIFRGN 65 Query: 70 PSFFSTF----ARVEG---MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 P ARV E +D+ +++E + R + +N +R D L HL Sbjct: 66 PEETPHAGIIRARVSPGITPEPRSDL-LEIEIVSGKPNRAM-LNRHKVRPRD-LVGHLST 122 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GY 177 P + SG RR FLDR+ + P D + +R R L + Sbjct: 123 VLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVARRHEV 182 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQ-KENFPHI----------- 224 D + + L K+ +R ++ L L+ Y Q PH Sbjct: 183 LDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQAPHESETNPNEATPT 242 Query: 225 -------------KLSLTGFLDGKFDQSFCA---LKEEYAKKLFDGRKMDSMSRR-TLIG 267 +S T +D Q A + E + R +D R L G Sbjct: 243 AENPVTARMTYRDNVSKTLGIDASARQIMFADTSVLETQIRAALRSRHLDEARRGVNLCG 302 Query: 268 PHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 HR D +++C + + S GE + + LA L+ G AP+LLLD++ A L Sbjct: 303 THRDD--IEFCLHDFPVKGYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDVFAEL 360 Query: 327 DEDKRNALFRIVTDIGSQIFMT 348 D +R A+ + + Q+++T Sbjct: 361 DSHRRAAILGAI-EAADQVWIT 381 >gi|123966993|ref|YP_001012074.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9515] gi|123201359|gb|ABM72967.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9515] Length = 325 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 73/326 (22%), Positives = 147/326 (45%), Gaps = 25/326 (7%) Query: 43 ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEG-MEGLADISIKLETRDDRSVR 101 +LE++ LS R R S D+ + S A + G ++ D+ + L + + + Sbjct: 1 MLESVEVLSQLRSSRALSDKDLIKNDSE-----MAVIYGQIDFTDDLKVNLFRKGSKKIY 55 Query: 102 CLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161 +ND +++ E+ ++R + I RR ++DR+V ++P + + Sbjct: 56 ---VNDSLLKKQSEIKNYIRSVCFCSNDINIVKSEPGYRRTWIDRVVSQLEPIYVELIHR 112 Query: 162 FERLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217 F RL++ R+ F S S + QM+ + +I R I+ + + EY Sbjct: 113 FNRLLKQRSYFWRSESFQKDQSSEVIESFDIQMSLICTRIFRRRRRAISRIRPYV-EYWH 171 Query: 218 ------KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 KE LS +D ++ + + +L R +++++ + GPHR Sbjct: 172 NHLSKSKEQISINYLSSFENIDEAEEEEE-VISNQMVDQLQKQRAIEALTGKCSFGPHRD 230 Query: 272 DLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 D +++ I++ +GS+G+Q+ ++ + +A L+ N P+L+LD++ A LD ++ Sbjct: 231 D--IEFLINDISLRKYGSSGQQRTFILALKMAELDLLRNMINLPPLLILDDVLAELDMNR 288 Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFD 356 +N L V SQ F++ T F+ Sbjct: 289 QNLLLNSVGK-ESQCFISATHLDTFN 313 >gi|323343966|ref|ZP_08084193.1| recombination protein F [Prevotella oralis ATCC 33269] gi|323095785|gb|EFZ38359.1| recombination protein F [Prevotella oralis ATCC 33269] Length = 372 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 155/364 (42%), Gaps = 33/364 (9%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI LN +RN + L + +G NGVGKTN L+A+ +LS R + V Sbjct: 5 KISILN---YRNIRDVSLTLSPKINCLIGHNGVGKTNFLDAVYYLSFCRSAFNPIDSQVI 61 Query: 66 RIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + V E + DI ++ + + + N + + E + + + Sbjct: 62 MHDEDFFMLQGSYVNDTDEEIEDIYCGMKRG---TKKHFKRNGKEYKRLSEHIGLIPLVF 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183 + P+ + S ERRR +D ++ D + + ++ + ++ RN LL E D + Sbjct: 119 VSPADASLIDNGSEERRRLMDVVISQYDHSYIDALSNYNKALQQRNVLLRQEAEPDVALM 178 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD----GKFDQS 239 E +MA G + R + + E++ F I S++G + G +S Sbjct: 179 EIWEEEMARNGELLYRKR-------DAFVKEFIPV--FQRIYSSISGDKEQVELGY--RS 227 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 C + + + R D +L G HR DL + D + GS G+ K ++ + Sbjct: 228 HCQ-RGSLLEVIRHDRSKDRAVGYSLHGVHRDDLEM-LLDGYLMKREGSQGQTKTFVLAL 285 Query: 300 FLAH----ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV 354 LA R SNTT P+LLLD+I LD + + +V+ D QIF+T T++ Sbjct: 286 KLAQFDFLKRTASNTT---PLLLLDDIFDKLDAARVEQIVHLVSGDSYGQIFITDTNRDH 342 Query: 355 FDSL 358 D + Sbjct: 343 LDRI 346 >gi|309799252|ref|ZP_07693500.1| DNA replication and repair protein RecF [Streptococcus infantis SK1302] gi|308117097|gb|EFO54525.1| DNA replication and repair protein RecF [Streptococcus infantis SK1302] Length = 164 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 3/129 (2%) Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L E + L R D + T +GPHR D+I + + + GS G+ + +++ I LA Sbjct: 35 LSESFYTALQKSRSRDLFKKNTGVGPHRDDMI--FLINGMDASFGSQGQHRSLVLSIKLA 92 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L +T Sbjct: 93 EIELMESITKESPILLLDDVMSELDNTRQLKLLETISQ-NIQTFITTTSLEHLQNLPDTL 151 Query: 363 KFMRISNHQ 371 ++N Q Sbjct: 152 SLFTVNNGQ 160 >gi|291520352|emb|CBK75573.1| hypothetical protein CIY_30620 [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 20/218 (9%) Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI---EAQMAELGVKINIA 200 +D + ID + + ++ + + RN LL E + ++ + Q+ G KI Sbjct: 1 MDAELCQIDKIYLSDLTNYNKALNQRNALLKEIIYKPELKETLSIWDEQLINYGKKIITR 60 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQSFCALKEE--YAKKLFDGRK 256 R + IN ++ ++ + H K++ +GK D S+ E+ + +L ++ Sbjct: 61 RQKFINDINIIVKDI-------HSKIT-----NGKENIDVSYDPNIEDIFFLDELVKNKE 108 Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316 D +T +GPHR D+ + D GS G+Q+ + + L+ +L+ +T PI Sbjct: 109 KDLRFCQTSVGPHRDDIKI-TVDGIDIRKFGSQGQQRTCALSLKLSEIKLVEDTINDKPI 167 Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 LLLD++ + LD+++++ L + D + I TG D+ V Sbjct: 168 LLLDDVLSELDKNRQSDLLDNLLDTQTIITCTGIDEFV 205 >gi|53802865|ref|YP_115418.1| DNA replication and repair protein RecF [Methylococcus capsulatus str. Bath] gi|81680705|sp|Q602N2|RECF_METCA RecName: Full=DNA replication and repair protein recF gi|53756626|gb|AAU90917.1| DNA replication and repair protein RecF [Methylococcus capsulatus str. Bath] Length = 359 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 149/366 (40%), Gaps = 25/366 (6%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I++ RN S L + G NG GKT++LEAI LS G+ FR + R Sbjct: 6 LDIADVRNIESASLSPGEGLNLLFGANGSGKTSLLEAIYLLSRGKSFRSPQSGRIIRFDR 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV--- 126 P V G G I + R RS + +++ R D + +R+ V Sbjct: 66 PCLT-----VSGSIGRPGAGIAVGVRLGRSEKEVRVGG---RSCDSSAQLIRLFPAVLIH 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P+ + G RR+ LD VF ++ + + F R + RN +L G S ++ Sbjct: 118 PASVALLEGPPRWRRQMLDWGVFHVEQGYLDLLRRFSRTLEQRNAVL-RGDAPGSSLAAW 176 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCALKE 245 ++A G MI L S ++ + + +F + +L G D + + Sbjct: 177 SGELARWGT--------MIAELRSSYLDRI-RMHFGEMVSALLGRTDVELVVRPGWRAGW 227 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 YA L + D T GP + D V + + S G+ K++ + LA A Sbjct: 228 SYADALAASQPTDRRLGYTEPGPQKGDFAVLVGGRPAR-DYLSRGQLKLLTYALLLAQAG 286 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT--GTDKSVFDSLNETAK 363 L+ LL+D+I++ LD + L +V G Q F+T G + V + TA+ Sbjct: 287 LLEADQPGRVCLLVDDIASELDSRNQERLLSLVKSTGLQSFVTFSGATQGVAAVVGRTAR 346 Query: 364 FMRISN 369 + Sbjct: 347 VFHVEQ 352 >gi|323717342|gb|EGB26547.1| DNA replication and repair protein recF [Mycobacterium tuberculosis CDC1551A] Length = 328 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 76/306 (24%), Positives = 130/306 (42%), Gaps = 34/306 (11%) Query: 66 RIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ + ST +G E D+ I V ++N +R ++ LR Sbjct: 5 RVGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVL 59 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------- 175 P + G +RRR+LD + P ++ER++R R LL Sbjct: 60 FAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGD 119 Query: 176 -GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF- 231 G FD+ W ++++AE G ++ AR++++N L+ + + Q P + + G+ Sbjct: 120 RGVFDTLEVW----DSRLAEHGAELVAARIDLVNQLAPEVKKAYQL-LAPESRSASIGYR 174 Query: 232 ----LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITI 284 + G +QS + + D+ R L+GPHR DLI+ D+ Sbjct: 175 ASMDVTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK- 233 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 S GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q Sbjct: 234 GFASHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQ 291 Query: 345 IFMTGT 350 + +T Sbjct: 292 VLVTAA 297 >gi|257462456|ref|ZP_05626868.1| RECF protein [Fusobacterium sp. D12] gi|317060113|ref|ZP_07924598.1| DNA replication and repair protein recF [Fusobacterium sp. D12] gi|313685789|gb|EFS22624.1| DNA replication and repair protein recF [Fusobacterium sp. D12] Length = 248 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 6/202 (2%) Query: 16 RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFST 75 RN + ++ F A +F G NG GKT+ILEAI F G FR +++ + S Sbjct: 12 RNLKNQKISFCAPIQVFYGKNGQGKTSILEAIYFAGTGLSFRTRHTSEMITYTEDT-LSC 70 Query: 76 FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG 135 F +E + ++ S+ + +D+ + E ++ + + +P + +G Sbjct: 71 F--LEYQDQFSEKSLAVSIENDKKFFFFLGKKISQM---EFYGNVNMIFYIPEDVMLING 125 Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195 RR F+DR + D + ++ F L++ RN+ L E +++ + E + E G Sbjct: 126 SPSLRRLFIDREISQTDSFYLHQLKKFSHLLKIRNKYLKEKLYENEEYAIYEKEFVECGS 185 Query: 196 KINIARVEMINALSSLIMEYVQ 217 + R + I +S+ + + Q Sbjct: 186 YLIEQRKKYIQEISNFVEKIYQ 207 >gi|332294864|ref|YP_004436787.1| DNA replication and repair protein recF [Thermodesulfobium narugense DSM 14796] gi|332177967|gb|AEE13656.1| DNA replication and repair protein recF [Thermodesulfobium narugense DSM 14796] Length = 323 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 73/341 (21%), Positives = 148/341 (43%), Gaps = 33/341 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I FRN+ ++ I +G+N GKTN+LEAI G+ ++ + Sbjct: 3 LEIHHFRNFEHNTFNLSKKNLI-IGENASGKTNLLEAIYLTLRGKTKNNIPNQNLIQ--- 58 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F+R + ++E + + L+IND + +L ++ ++ ++ Sbjct: 59 ------FSRESALIRNTVYGKRIEIMMNNKNKILKINDKKLNSSIKLWQYFKVFYINLFD 112 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + S +R+FLD ++ I+P + D + L +N +L + D S + + Sbjct: 113 SLLLSQEPKNKRKFLDEIIININPEKIKLYKDLKILNTQKNYVL-KNKTDKELIKSYDIK 171 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + +L +I+ R E++N + + +++E+ + KF +S + KE K Sbjct: 172 LTQLSQEISNLREEVLNNVILNTKKLLKEES-----------IQIKFYKSLES-KEIKNK 219 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 ++ + + ++R +I P R + V + I + STGE K + + LA + Sbjct: 220 EIIEAK-----TKRNIINPSRDNFSVKI--RNIDSSFLSTGEIKKFSLALHLAKISIFKE 272 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + L DEI++ LD+ + L + + I + +T T Sbjct: 273 HNCVS---LFDEINSFLDKANLDILLKWLQKIDGYVIVTST 310 >gi|227496603|ref|ZP_03926881.1| recombination protein F [Actinomyces urogenitalis DSM 15434] gi|226833883|gb|EEH66266.1| recombination protein F [Actinomyces urogenitalis DSM 15434] Length = 409 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 97/402 (24%), Positives = 163/402 (40%), Gaps = 56/402 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+ +FR+Y L L + T F+G NG GKTN++EA+ +LS R + + + R Sbjct: 3 VSDLSADDFRSYEHLVLSLEPGVTAFIGSNGQGKTNLVEAVGYLSNLTSHRVGADSALIR 62 Query: 67 ---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRI 122 G P R + + G +++E ++ R L + V R EL LR Sbjct: 63 RAEPGQPQPAGAVLRAKVVHGERPTVLEIELISGKANRARLGRSPVRPR---ELLGVLRT 119 Query: 123 SWLVP---SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF- 178 P S+ R G+ RRRFLD + + P + ++++ R LL Sbjct: 120 VIFAPEDLSLVREEPGV---RRRFLDDLAVTLRPSLAGVRTEHDKILAQRASLLKSARAA 176 Query: 179 ---DSSWCSSIE---AQMAELGVKINIARVEMINALSSLIM---EYVQKENFP-HIK--- 225 +S S++E AQ+A + ARV+++ L + E V + P H+ Sbjct: 177 RRSTASMLSTLEVWDAQLAAAAATLIAARVDVVRRLRPWVASAYEAVSQAQSPVHLAYRS 236 Query: 226 --LSLTGFLDGK-------------------FDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 L+ G D DQ+ A + E A R++D + Sbjct: 237 SLLAHEGMADPDPRAITPGQEESWPPGEAELLDQASTAERLEAAMGQLHAREIDRGA--N 294 Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-----APILLL 319 L+G HR +L + + S GEQ + + + LA ++ + P+L+L Sbjct: 295 LVGAHRDELSL-FLSGMPAKGFASHGEQWSLALALRLASYEMLRHDVAAYGGDGEPVLIL 353 Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 D++ A LD+ +R AL V + + V L+ T Sbjct: 354 DDVFASLDDKRRRALAHTVAGAQQVLVTAAVPQDVPGELDGT 395 >gi|311063462|ref|YP_003970187.1| RecF DNA replication and repair protein [Bifidobacterium bifidum PRL2010] gi|310865781|gb|ADP35150.1| RecF DNA replication and repair protein [Bifidobacterium bifidum PRL2010] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 90/400 (22%), Positives = 150/400 (37%), Gaps = 58/400 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--------- 57 I L + +R++ L I G NG+GKTNI+EAI LS G R Sbjct: 3 ISRLALDHYRSWNHCVLDLTPGINILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPLVQ 62 Query: 58 RASYADVTRIGSPSFFSTFARVEGMEGLADI-------------SIKLE-TRDDRSVRCL 103 R +A R S +G+ AD + LE T R Sbjct: 63 RGEHAATIRANIESVTDPEPADDGVNASADAVYISDMKPVRQTQTTTLEATIAARGANRA 122 Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +IN R + E+ L P ++ +G RR F++++ + P + R+ F Sbjct: 123 RINGGQSRYLREILGTLPTVSFTPEDQQLVAGDPAVRRSFINQVASLLIPGYANRLQSFT 182 Query: 164 RLMRGRNRLLTE-------GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIM 213 + + R LL + G + S +E Q E GV ++ R +I L+ Sbjct: 183 HVAKQRAALLKQLGQWQRAGSPIDAALSGLEIWTGQFIEAGVALSRDRQRIIAELNKSFG 242 Query: 214 EYVQK-----ENFPHIKLSLTGFLDG----------KFD-----QSFCALKEEYAKKLFD 253 + + P DG FD Q+ L ++ ++++ Sbjct: 243 PLYARLAGVAGDLPSNAEIQDAAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQRIYP 302 Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313 G ++ LIGP R DL+V + S GE + + + +A R + Sbjct: 303 GEVSRGVN---LIGPQRDDLLV-TLNGMPAREFASNGEMWTLALALKMAQYRALCEYFDT 358 Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 P+++LD++ A LDE +R + R Q+ +T +S Sbjct: 359 RPVVILDDVFAQLDESRRTEILRFAA-AQDQVLITAAAES 397 >gi|198282151|ref|YP_002218472.1| DNA replication and repair protein RecF [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666274|ref|YP_002424517.1| DNA replication and repair protein RecF [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246672|gb|ACH82265.1| DNA replication and repair protein RecF [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518487|gb|ACK79073.1| DNA replication and repair protein RecF [Acidithiobacillus ferrooxidans ATCC 23270] Length = 350 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/354 (22%), Positives = 143/354 (40%), Gaps = 38/354 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L+I R +L L D Q +G NG GK+++LEAI L G+ +R S V Sbjct: 1 MPLEALHIQSVRCIETLDLKTDRQWNWLIGANGAGKSSVLEAIHVLGTGQTWRHGS-RHV 59 Query: 65 TRIGSPSFFSTFARVEG----MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R G ++ + A + G + + + L ++ + ++ + E N H Sbjct: 60 LREGDDAYLVS-AHLSGHFLALRRRGEEREIRYDGEPLGSAWLLLDILPLQSLHEDNSHF 118 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 SG + RRR LD ++ D + + R ++ RN L + Sbjct: 119 ------------VSGTAEGRRRVLDWGIYYADRYYGTVFRQYRRALQQRNAWLKSDHGRQ 166 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFD 237 W + G I R + A+ ++ ++ + LSL +G+ +G Sbjct: 167 PWDDGVIVA----GEDIQQRRQAHLAAVQLEVVTLWERWSGSLSGLSLHLHSGWKEG-MA 221 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVL 296 C L++ + D + T GPHR++L K A I S G+ +V+ Sbjct: 222 LGDCLLRDH---------EQDREAGYTHSGPHRANLAFRVRGKPAPDIL--SRGQLRVLG 270 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + LA +++ P +L+D+ +A LD R+ + +G QIF T Sbjct: 271 LAYRLAQVKILKQAGLPLPTILIDDFAAELDASARDWWVNELDLLGVQIFAAVT 324 >gi|254421230|ref|ZP_05034948.1| DNA replication and repair protein RecF [Synechococcus sp. PCC 7335] gi|196188719|gb|EDX83683.1| DNA replication and repair protein RecF [Synechococcus sp. PCC 7335] Length = 401 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 91/387 (23%), Positives = 168/387 (43%), Gaps = 48/387 (12%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 + FRNY+S + F A TI +GDN GK+N+LEA+ L+ + R + D+ G + Sbjct: 1 MQNFRNYSSQSVAFGAPKTILLGDNAQGKSNLLEAVELLATLKSHRTSRDRDLVGEGKKT 60 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 A+++ G +++++ L R+ + + + R D L + + +D Sbjct: 61 AH-IKAQLQKELGPSELNLVLRNGGRRA--TILNGETLKRQQDFLGSLNAVQFSSLDIDL 117 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-------FDSSWCS 184 + G ERR ++D ++ ++P + + + ++++ RN + + FDS+ + Sbjct: 118 VRGGPG-ERRSWIDTLLTQLEPVYAYILQQYNQVLKQRNAFIKQHTDEENSQPFDSTQMA 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENF-----PHIK--LSLTGFL 232 +AQ+ G ++ R + L L + + E P+I +S TG Sbjct: 177 LWDAQLVAAGTRVIRRRSRGLQRLIPLAQAWHRAISGDAEQLMITYQPNISTTVSTTGLS 236 Query: 233 D--GKFDQSFCALKEEYAKKLFDGRKMDS-------------------MSRRTLIGPHRS 271 G + LK+ + D + D R +L GPHR Sbjct: 237 TEAGLSTEETLLLKDPKKDSVEDAQLDDPDHIQQVFFEKIKSRAIAEYHQRTSLAGPHRD 296 Query: 272 DLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 D +D+ + +GS G+Q+ +++ + LA LI G P+LLLD++ A LD + Sbjct: 297 D--IDFSINHTPARQYGSQGQQRTLVLALKLAELELIEAVIGEPPLLLLDDVLAELDLKR 354 Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDS 357 +N L + D Q +T T FD+ Sbjct: 355 QNQLLETIED-RFQTLITTTHLGAFDA 380 >gi|212550984|ref|YP_002309301.1| DNA replication and repair protein RecF [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|259563354|sp|B6YRR8|RECF_AZOPC RecName: Full=DNA replication and repair protein recF gi|212549222|dbj|BAG83890.1| DNA replication and repair protein RecF [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 366 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 92/368 (25%), Positives = 154/368 (41%), Gaps = 42/368 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + I F+N L F + +GDNG+GKTN+L+A+ +L+ + + D Sbjct: 3 IEIVTILNFKNIEEGSLSFSPKINYLLGDNGMGKTNLLDALYYLAFTKN--HTNLTDSQL 60 Query: 67 IGSPSFFSTF-ARVEGMEGLADI--SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 I F+ A + + + +I IKL+ R + + N + + E + Sbjct: 61 INYNKDFAVLHAFYKDKDNIEEIYCGIKLKQR-----KIFKRNKKEYKKLSEHIGLIPTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181 + P+ + S ERR+F D ++ D + R +I + + ++ RN LL S Sbjct: 116 MVSPNDTNMIQFGSNERRKFADMLISQYDKEYLRTLIYYNQALQQRNFLLRNALPSLSGE 175 Query: 182 ----WCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDG 234 W E QM G I R L EY + +N I L LD Sbjct: 176 EFEIW----EEQMGTTGEIIYQKRKNFTTDFLPLFKEYYYTISDKN-ETIDLEYVSHLD- 229 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD---LIVDYCDKAITIAHGSTGE 291 D S L L++ R+ D + T G H+ D L+ ++ + I GS G+ Sbjct: 230 --DHSLFEL-------LYEKRERDKILGFTSTGIHKDDFNFLLNNFLIRKI----GSQGQ 276 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT 350 K L+ + LA + PILLLD++ LD + + R++ QIF+T T Sbjct: 277 NKTYLIALKLAQFSFLVQKGLSIPILLLDDLFDKLDAKRVEKIIRLLAQKTFGQIFITDT 336 Query: 351 DKSVFDSL 358 ++ D++ Sbjct: 337 NRKHLDNI 344 >gi|269954814|ref|YP_003324603.1| DNA replication and repair protein RecF [Xylanimonas cellulosilytica DSM 15894] gi|269303495|gb|ACZ29045.1| DNA replication and repair protein RecF [Xylanimonas cellulosilytica DSM 15894] Length = 485 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 140/336 (41%), Gaps = 36/336 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +FR+YAS+ + + FVG NG GKTN++EAI +++ R ++ A + R Sbjct: 3 VSHLSLLDFRSYASVDVELEPGPNAFVGRNGQGKTNLVEAIGYVATLGSHRVSNDAPLVR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ R + G +++LE R+ R +IN + ++ LR Sbjct: 63 AGA---ERAVVRTRIVRGDRASTVELEITPGRANRA-RINRGQLGRARDVLGILRTVLFA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCS 184 P + G RR+ LD++V + PR + D+ER+ R R+ LL G + Sbjct: 119 PEDLALVKGDPDGRRKLLDQLVVQLLPRAAGLLGDYERVNRQRSALLKSLRGQRAAGRSP 178 Query: 185 SI------EAQMAELGVKINIARVEMINAL-SSLIMEYVQKENF-PHIKLSLTGFLDGKF 236 + +A+ A+LG +I R++++ A+ + Y Q + H +L LD Sbjct: 179 DLGTLEVWDAKAAQLGGQILGMRLQLVQAMRPHVAAAYAQVSDADGHAELGYRSSLDAVL 238 Query: 237 ---------------------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 S L+ + R + +L+GPHR DL++ Sbjct: 239 PDDAGASAGGAAILPADLADAPPSAVELETLLLAGMAAARSQEVDRGVSLVGPHRDDLVL 298 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 + S GE + + LA RL+ T Sbjct: 299 TLGGLPAK-GYASHGESWSFALALRLASYRLLGGTP 333 >gi|325912222|ref|ZP_08174619.1| DNA replication and repair protein RecF [Lactobacillus iners UPII 143-D] gi|325475881|gb|EGC79050.1| DNA replication and repair protein RecF [Lactobacillus iners UPII 143-D] Length = 276 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/282 (24%), Positives = 121/282 (42%), Gaps = 30/282 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ + Sbjct: 6 LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F A + G +I L+ + IN + + + + P Sbjct: 63 --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D I+ + + + ++++ RN L ++ D + + Sbjct: 121 LSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242 + Q+A L ++ RV ++ L KEN ++ LD ++ SF Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231 Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIV 275 E+ Y K L F+ +++ M TL+GPHR DL V Sbjct: 232 FDEKDSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQV 273 >gi|313829192|gb|EFS66906.1| DNA replication and repair protein RecF [Propionibacterium acnes HL063PA2] Length = 204 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 7/196 (3%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P+ + G +RR FLD +V PR D+ER+++ RN LL S Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALL------KSLS 179 Query: 184 SSIEAQMAELGVKINI 199 + AE+G ++I Sbjct: 180 GKGRSAGAEIGAAVDI 195 >gi|89512208|gb|ABD74000.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis] Length = 155 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 6/142 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + Sbjct: 1 VYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALRYSSTLGSHRVGTDAPL 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + ST +G E D+ I R +++ ++N +R E+ LR Sbjct: 61 IRAGADRAVVSTIVVNDGRECAVDLEIA-AGRANKA----RLNRSPVRSTREVLGVLRAV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLD 145 P + G ERRR+LD Sbjct: 116 LFAPEDLALVRGDPSERRRYLD 137 >gi|15835874|ref|NP_300398.1| ATPase [Chlamydophila pneumoniae J138] gi|8978713|dbj|BAA98549.1| RecF-ABC superfamily ATPase [Chlamydophila pneumoniae J138] Length = 207 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 12/170 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L + FRN++ L + + + GKTN+LEA+ LS GR FR D Sbjct: 5 MKICSLKLKNFRNHSDLEISLAPKL-----NYAQGKTNLLEALYVLSLGRSFRTQHLTDT 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GS FF +E + L D+ + + N + I+ + +L + I Sbjct: 60 ITFGSSHFF-----LETQFEKDHLPQALSIYTDKQGKKICYNQLPIKTLSQLIGKVPIV- 113 Query: 125 LVPSMDRIF-SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 L S DR+ SG +RR FL+ ++ D + + + R ++ RN LL Sbjct: 114 LFSSKDRLLISGAPADRRLFLNLLLSQCDNHYTLCLSYYHRALQQRNALL 163 >gi|310286523|ref|YP_003937781.1| replication and repair protein recF [Bifidobacterium bifidum S17] gi|309250459|gb|ADO52207.1| replication and repair protein recF [Bifidobacterium bifidum S17] Length = 420 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 93/397 (23%), Positives = 151/397 (38%), Gaps = 68/397 (17%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFR---------RASYADVTRIGSPSFFSTFARVEG 81 I G NG+GKTNI+EAI LS G R R +A R S +G Sbjct: 10 ILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPLVQRGEHAATIRANIESVTDPEPADDG 69 Query: 82 MEGLADISIKLETRDDRSVRCLQ-----------------INDVVIRVVDELNKHLRISW 124 + AD ++ D + VR Q IN R + E+ L Sbjct: 70 VNTSAD---AVDISDMKPVRPTQTTTLEATIAARGANRARINGGQSRYLREILGTLPTVS 126 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177 P ++ +G RR F++++ + P + R+ F + + R LL EG Sbjct: 127 FAPEDQQLVAGDPAVRRSFINQVASLLIPGYANRLQSFTHVAKQRAALLKQLGQWQREGS 186 Query: 178 FDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQK-----ENFPHIKLSLT 229 + S +E Q E GV ++ R +I L+ + + P Sbjct: 187 PIDAALSGLEIWTGQFIEEGVALSRDRQRIIAELNKSFGPLYARLAGVAGDLPSNAEIQD 246 Query: 230 GFLDG----------KFD-----QSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDL 273 DG FD Q+ L ++ ++++ G +SR LIGP R DL Sbjct: 247 AAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQRIYPGE----VSRGVNLIGPQRDDL 302 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 +V + S GE + + + +A + + P+++LD++ A LDE +R Sbjct: 303 LV-TLNGMPAREFASNGEMWTLALALKMAQYQALCEYFDTRPVVILDDVFAQLDESRRTE 361 Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSL--NETAKFMRIS 368 + R Q+ +T +S L NE+A+ I Sbjct: 362 ILRFAA-AQDQVLITAAAESDIPILPANESAESGEIP 397 >gi|224283954|ref|ZP_03647276.1| Recombinational DNA repair ATPase [Bifidobacterium bifidum NCIMB 41171] gi|313141106|ref|ZP_07803299.1| recombination protein RecF [Bifidobacterium bifidum NCIMB 41171] gi|313133616|gb|EFR51233.1| recombination protein RecF [Bifidobacterium bifidum NCIMB 41171] Length = 420 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 146/380 (38%), Gaps = 66/380 (17%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFR---------RASYADVTRIGSPSFFSTFARVEG 81 I G NG+GKTNI+EAI LS G R R +A R S +G Sbjct: 10 ILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPLVQRGEHAATIRANIESVTDPEPADDG 69 Query: 82 MEGLADISIKLETRDDRSVRCLQ-----------------INDVVIRVVDELNKHLRISW 124 + AD ++ D + VR Q IN R + E+ L Sbjct: 70 VNTSAD---AVDISDMKPVRQTQTTTLEATIAARGANRARINGGQSRYLREILGTLPTVS 126 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GY 177 P ++ +G RR F++++ + P + R+ F + + R LL + G Sbjct: 127 FTPEDQQLVAGDPAVRRSFINQVASLLIPGYANRLQSFTHVAKQRAALLKQLGQWQRAGS 186 Query: 178 FDSSWCSSIE---AQMAELGVKINIARVEMINALS-SLIMEYVQ----KENFPHIKLSLT 229 + S +E Q E GV ++ R +I L+ S Y + + P Sbjct: 187 PIDAALSGLEIWTGQFIEAGVALSRDRQRIIAELNKSFGPLYARLAGVAGDLPSNAEIQD 246 Query: 230 GFLDG----------KFD-----QSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDL 273 DG FD Q+ L ++ ++++ G +SR LIGP R DL Sbjct: 247 AAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQRIYPGE----VSRGVNLIGPQRDDL 302 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 +V + S GE + + + +A R + P+++LD++ A LDE +R Sbjct: 303 LV-TLNGMPAREFASNGEMWTLALALKMAQYRALCEYFDTRPVVILDDVFAQLDESRRTE 361 Query: 334 LFRIVTDIGSQIFMTGTDKS 353 + R Q+ +T +S Sbjct: 362 ILRFAA-AQDQVLITAAAES 380 >gi|40017|emb|CAA26220.1| unnamed protein product [Bacillus subtilis] Length = 323 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 66/319 (20%), Positives = 133/319 (41%), Gaps = 45/319 (14%) Query: 76 FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG 135 +A++EG + +I ++ + + ++N + + + + L P + G Sbjct: 20 YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKG 79 Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIEAQMA 191 RRRFLD + + P + + +++++ RN L T D + + Q+ Sbjct: 80 SPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDRTMLDVLTDQLV 139 Query: 192 ELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIKLSLTGFLD--- 233 E+ K+ + R++ L L ++Y H L ++ LD Sbjct: 140 EVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKY-------HTALDVSDPLDLSK 192 Query: 234 --GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + ++F L+E+ ++ TL GPHR D++ Y + +GS G+ Sbjct: 193 IGDSYQEAFSKLREKEIERGV-----------TLSGPHRDDVLF-YVNGRDVQTYGSQGQ 240 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT 350 Q+ + + LA LI G PILLLD++ + LD+ +++ L + + + + T Sbjct: 241 QRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQGRVQTFVTTTSV 300 Query: 351 DKSVFDSLNETAKFMRISN 369 D ++L + F R+ N Sbjct: 301 DGIDHETLRQAGMF-RVQN 318 >gi|126640118|ref|YP_001083102.1| recombination protein F [Acinetobacter baumannii ATCC 17978] Length = 280 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/266 (21%), Positives = 120/266 (45%), Gaps = 35/266 (13%) Query: 101 RCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 + +++N + +L K L + + P I + RR+ LD ++F ++P Sbjct: 9 QLMKVNGDTVATQGQLAKLLPLQHIDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQ 68 Query: 161 DFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMI--------NALSSL 211 + R ++ RN LL T + +++ G ++ R+ ++ N LS L Sbjct: 69 YYSRALKQRNTLLKTRRNLSLADLEPWNKMLSDYGEILHSQRLSIVEQWNVYFQNDLSQL 128 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 + P +++ L ++ F ++ + L + + D R T GPHR+ Sbjct: 129 L---------PDLEIEL------EYSPGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRA 172 Query: 272 DLIVD----YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 DL + + D + S G++K++++ + L+ ++ + + ++LLD+++A LD Sbjct: 173 DLRLKTPFGHADDVL-----SRGQKKLLIIALKLSQIAML-HASNKETVVLLDDLTAELD 226 Query: 328 EDKRNALFRIVTDIGSQIFMTGTDKS 353 + L ++ +GSQ+FMT D + Sbjct: 227 LTAQQRLIERLSQLGSQVFMTTLDHA 252 >gi|226326918|ref|ZP_03802436.1| hypothetical protein PROPEN_00778 [Proteus penneri ATCC 35198] gi|225204755|gb|EEG87109.1| hypothetical protein PROPEN_00778 [Proteus penneri ATCC 35198] Length = 164 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 3/157 (1%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I FRN L VG NG GKT+ILEAI L GR FR + V + + Sbjct: 8 IRHFRNIEQADLPLADGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSSQANRVIQHDENA 67 Query: 72 FFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130 F R+ G+ E +I L ++D ++I+ + EL K L + + P Sbjct: 68 FI-LHGRLSGLNEESRGYAIGL-SKDREGNSTVRIDGSDGHKIAELAKLLPMQLITPEGF 125 Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 + +G RR F+D F +PR R M+ F+ + Sbjct: 126 TLLNGGPKYRRAFIDWGCFHNEPRFFRCMVGFKTCFK 162 >gi|294786217|ref|ZP_06751471.1| RecF protein [Parascardovia denticolens F0305] gi|315225747|ref|ZP_07867535.1| recombination protein F [Parascardovia denticolens DSM 10105] gi|294485050|gb|EFG32684.1| RecF protein [Parascardovia denticolens F0305] gi|315119879|gb|EFT83011.1| recombination protein F [Parascardovia denticolens DSM 10105] Length = 405 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 86/376 (22%), Positives = 154/376 (40%), Gaps = 47/376 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + ++R++ + + VG NG+GKTNI+EA+ FLS G R S + R G+ Sbjct: 6 LILDDYRSWPHCLVDLTPGVNVLVGHNGLGKTNIMEAVEFLSTGGSHRVRSSQPLVRQGA 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + R + ++G + + T R +IN+ + ++ ++ P Sbjct: 66 K---AATIRAKLVQGDRETQYTV-TIPGRGANRAKINNGPSLYMRDIVGQVKTVVFTPED 121 Query: 130 DRIFSGLSMERRRFLD-------RMVFAIDPRH----RRRMIDFERLMRGRNRLLTEGYF 178 + S RRRFLD R + + R+ ++R+ +R+ + R G Sbjct: 122 QLLISMDPGHRRRFLDDAGVQLIRPYYDLLQRYAHVAKQRVALLKRISQARFGSSPFGGL 181 Query: 179 D--SSWCSSIE---AQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPH 223 D + +S+E Q+ LG+ + R ++ LS + + Q P Sbjct: 182 DDLDASYASLEVWTGQLINLGLALTQERADICQRLSPIFNRTYRHLAGDGQEAQLRYLPS 241 Query: 224 IKLSLTGFLDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 + L +D DQ + ++ ++LF+G R LIGPHR D V++ Sbjct: 242 FEEFLE--IDPAGDQEVVFDRISQHFQRLFEGELAQG---RNLIGPHRDD--VEFVLNGF 294 Query: 283 TIA-HGSTGE-------QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 + S GE K+ L + L + G PIL+LD++ + LD +R + Sbjct: 295 PARDYASNGELWTLSLALKMSLFQLLLRVEQEGEEGEGGEPILILDDVFSQLDNSRREKI 354 Query: 335 FRIVTDIGSQIFMTGT 350 + G Q+ +T Sbjct: 355 VDFASKQG-QVLITAA 369 >gi|213865136|ref|ZP_03387255.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 156 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I +FRN + L VG NG GKT++LEAI L GR FR V R + Sbjct: 8 IKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQEA 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 F R++G E I + + + D VR I+ + EL + + + P Sbjct: 68 FV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEGFT 123 Query: 132 IFSGLSMERRRFLDRMVF 149 + +G RR FLD F Sbjct: 124 LLNGGPKYRRAFLDWGCF 141 >gi|309804865|ref|ZP_07698927.1| putative recombination protein F [Lactobacillus iners LactinV 09V1-c] gi|309805908|ref|ZP_07699940.1| putative recombination protein F [Lactobacillus iners LactinV 03V1-b] gi|308165804|gb|EFO68025.1| putative recombination protein F [Lactobacillus iners LactinV 09V1-c] gi|308167684|gb|EFO69831.1| putative recombination protein F [Lactobacillus iners LactinV 03V1-b] Length = 117 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 TL+GPHR DL V + +K + S G+Q+ +++ I LA L+ PILLLD++ Sbjct: 6 TLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVLSIKLAEIDLMHQILNEYPILLLDDVM 64 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + LD ++ L + +Q F+T TD Sbjct: 65 SELDNIRQKNLLNYING-KTQTFITTTD 91 >gi|95929988|ref|ZP_01312728.1| Recombinational DNA repair ATPase (RecF pathway)-like [Desulfuromonas acetoxidans DSM 684] gi|95133957|gb|EAT15616.1| Recombinational DNA repair ATPase (RecF pathway)-like [Desulfuromonas acetoxidans DSM 684] Length = 331 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 79/352 (22%), Positives = 151/352 (42%), Gaps = 44/352 (12%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYADV 64 KIK N FR + L + + ++ I+ G NG GKT+++E++ S R + D+ Sbjct: 4 KIKLQN---FRCFKELEINLNKKNIIY-GLNGSGKTSLVESLYLCSNYRTLSPKTKNNDL 59 Query: 65 TRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + S + F +T + ++L ++ + V+ V K ++ Sbjct: 60 IKFNSENAEIFINTKNK-----------LRLSISKNKKIYLDGFESDVLSFV----KSIK 104 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + + IF RR++ D+++F +D + + + +++R RN Sbjct: 105 CVFFLSDEIFIFFSKPSSRRKYFDQLIFNLDSDYLLLVQKYIKILRNRN----------I 154 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 C + ++ EL + + ++ N +S YV+ K+S L K + S Sbjct: 155 QCK--KNKVLELDIWTEYLK-DINNRISEKKKIYVENLTKEFKKVS-NDLLGKKVEFSIE 210 Query: 242 ALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K+EY F G + + RTL G H D + Y D ++ S G++K+ L I Sbjct: 211 IDKKEY----FPGIENKEIENGRTLFGHHLEDYSL-YIDGVNLNSYSSNGQKKLFLFLIK 265 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+H L S + L++D++ + LD N++ ++ I Q+ +T DK Sbjct: 266 LSHLSL-SEFYSYNQALIIDDLESELDNITINSILDYLSKINKQVIITNIDK 316 >gi|329891031|ref|ZP_08269374.1| recF [Brevundimonas diminuta ATCC 11568] gi|328846332|gb|EGF95896.1| recF [Brevundimonas diminuta ATCC 11568] Length = 78 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 36/53 (67%) Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 P+LLLDE AHLDE +R ALF + + Q FMTGT++ +F +L A+F+ + Sbjct: 19 PVLLLDEAPAHLDEARRAALFDEIEALKLQAFMTGTERPLFAALEGRAQFVAV 71 >gi|302336552|ref|YP_003801758.1| DNA replication and repair protein RecF [Spirochaeta smaragdinae DSM 11293] gi|301633737|gb|ADK79164.1| DNA replication and repair protein RecF [Spirochaeta smaragdinae DSM 11293] Length = 358 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 149/345 (43%), Gaps = 26/345 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L ++RN + DA VG+NG GK+N+LEAI LS G FR ++ R G Sbjct: 6 LKTYQYRNLKDAEVCLDAPRVFLVGENGQGKSNLLEAIYLLSFGSSFRTRRDQELIRRGC 65 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI-SWLVPS 128 + G DIS L ++ + + ++++ + EL +RI +V Sbjct: 66 GEL-----ALHGKTAEHDISFLLSGKNG-TTKSIKLDGKPVTDRKEL---VRIFPAIVFC 116 Query: 129 MDRI-FSGLSMERRR-FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 D I F S ERRR F D+ + +P + + ++++ RN L E D Sbjct: 117 HDDISFVNGSPERRRWFFDQTMSLHEPLFIDTLRSYRKILKLRNMALKEDRRD--LLDVY 174 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSF--CAL 243 + Q+A G++I R E I ++ H K+S L G + + S+ C Sbjct: 175 DIQLARAGMEIQEKRREAIEGFNTTFSSL-------HEKVSGLEGEMKIAYRPSWKGCKG 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E+ L R+ D + + GPHR D + + STG+ +++ + + + Sbjct: 228 EEDVGVLLHRRRESDLEMKTSGSGPHR-DRFAFLLEGRDFSSIASTGQLRLLSLLLRVGQ 286 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 AR G P+LLLD++ LD +R + + QIF T Sbjct: 287 ARFFYEKCGRRPVLLLDDVLLELDPRRRQRFLGTLPE-ADQIFFT 330 >gi|88807865|ref|ZP_01123376.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. WH 7805] gi|88787904|gb|EAR19060.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. WH 7805] Length = 345 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 82/334 (24%), Positives = 150/334 (44%), Gaps = 20/334 (5%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 +G NG+GK+N+LE++ L R R + AD+ +P + ++ E ++ Sbjct: 1 MIGSNGIGKSNLLESVELLGSLRSHRSSQDADLIHWDAPRALLKASCMDETE------VE 54 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 LE R + + V+ R +D + LR + G RR +LDR+V + Sbjct: 55 LELRRRGGRQARRNGKVLQRQLDLIGP-LRCVGFSALDLHLVRGEPALRRSWLDRVVLQL 113 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-----CSSIEAQMAELGVKINIARVEMIN 206 +P + + + RL+R R++ G ++++ S + QMA + +I+ R + Sbjct: 114 EPIYAELIGRYNRLLRQRSQFWRRGGGNNTFEHQALLDSFDNQMALVCTRIHRRRRRALL 173 Query: 207 ALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 L L + + + H +L L L+G+ + L E ++L R + Sbjct: 174 RLEPLAAAWQSRLSQGHEQLELRYSPGSVLEGEEAEEPWRLAIE--QQLHRQRGEEERLG 231 Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322 +GPHR D I + + GS+G+Q+ +++ + LA L+ G P+LLLD++ Sbjct: 232 SCRVGPHR-DEIDMLLNGTVARRFGSSGQQRTLVLALKLAELELVGELCGHPPLLLLDDV 290 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 A LD ++ AL V D Q ++ T F+ Sbjct: 291 LAELDPQRQLALLEAVGDT-HQCLVSATHLDAFE 323 >gi|315170509|gb|EFU14526.1| recombination protein F domain protein [Enterococcus faecalis TX1342] Length = 126 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 + RK + T +GPHR DL+ + + +GS G+Q+ + I LA L+ + T Sbjct: 1 MNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTTALSIKLAEIDLMHSET 59 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 G P+LLLD++ + LD +++ L + + Q F+T T Sbjct: 60 GEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 97 >gi|227494191|ref|ZP_03924507.1| recombination protein F [Actinomyces coleocanis DSM 15436] gi|226831925|gb|EEH64308.1| recombination protein F [Actinomyces coleocanis DSM 15436] Length = 399 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 79/376 (21%), Positives = 155/376 (41%), Gaps = 42/376 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +++FR+Y + T+ +G NG GKTN++EAI++L+ R + + R Sbjct: 3 VSHLALNDFRSYKETLIELKPGITVLLGYNGQGKTNVIEAIAYLAHLSSHRVNADTALVR 62 Query: 67 I---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G + R + + + +++E ++ R ++N + D L + +++ Sbjct: 63 YPQNGENPPAAAVIRAKLHKAQRERILEIEIVKGKANRA-RLNRAPAKPRDLLGE-IKVI 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + G RR FLD + + P + D+E++++ R LL + Sbjct: 121 VFAPEDLNLVKGDPAGRRHFLDSIATQLWPSYGVVKADYEKVLKQRASLLKQ------LG 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLI------MEYVQKENFPHIKLSLTGFLD---- 233 S+ A M + I +IN S LI ++ + K K+ G + Sbjct: 175 KSLRAGMKPDYAMLEIWDQPLINYASQLISLRLKLLKMLTKPANEAHKIVANGVKELRLE 234 Query: 234 ---------GKFDQSFCALKEEYAKKLFDGRKMDSMSRR------TLIGPHRSDLIVDYC 278 G+ D + A + A ++ + ++S+ L+GPHR DL + Sbjct: 235 YVNSLAEYSGEVDVNKLATDDIEAYQVLMKQVLESLRSAEVIRGVNLLGPHRDDLDLWLD 294 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA----PILLLDEISAHLDEDKRNAL 334 + + S GE V + + L ++ + PIL+LD++ + LD +R AL Sbjct: 295 ELPVK-GFASHGESWSVALALRLGCFEILCSEDYLGAVETPILILDDVFSELDGKRRKAL 353 Query: 335 FRIVTDIGSQIFMTGT 350 ++ Q+ +T Sbjct: 354 LEAISG-AEQVIITAA 368 >gi|296105500|ref|YP_003617200.1| DNA replication and repair protein RecF [Legionella pneumophila 2300/99 Alcoy] gi|295647401|gb|ADG23248.1| DNA replication and repair protein RecF [Legionella pneumophila 2300/99 Alcoy] Length = 309 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 101/215 (46%), Gaps = 22/215 (10%) Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIEAQMAELGV 195 RR LD +F + + + D++R++ RN LL T +F W + Q+++L Sbjct: 85 RRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHF-IPW----DQQLSQLAN 139 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255 +++ AR + + + + +I ++ + G ++ EE +K FD Sbjct: 140 QLDKARNDYFLQWQPKFYQVL--SDLTNISCTIE-YYKGWDRKNAGQNMEELLQKSFDS- 195 Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFA 314 D T GPH++DLI++ + + H S G+QK++L+ + LA +L+ Sbjct: 196 --DKNKLYTQYGPHQADLIINI--EQYRVKHTLSRGQQKIILIALKLAQGQLLDKDC--- 248 Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + L+D+++A LD+ + L + +T Q +T Sbjct: 249 -LYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITN 282 >gi|1790873|gb|AAB41128.1| RecF [Clostridium acetobutylicum ATCC 824] Length = 205 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 23/191 (12%) Query: 169 RNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 RN +L + + ++ S + Q+++ G + +R++ +N L+ +K H ++ Sbjct: 3 RNIMLRNKKFLNNDMISVYDEQLSKFGSSLIESRIKYLNKLN-------EKGKIIHSDIT 55 Query: 228 LTGFLDGKFDQSFCAL-----KEEYAKKLF----DGRKMDSMSRRTLIGPHRSDLIVDYC 278 GK + F L +E +++LF D K D T +GPHR D + Sbjct: 56 -----KGKEEIEFTYLTHVKGRENISEELFSLFKDSYKRDVEKGNTSVGPHRDDFSIK-I 109 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 + + GS G+Q+ ++ I A ++I + P+LLLD++ + LDE ++ + + Sbjct: 110 NGIDARSFGSQGQQRTSVLTIKFASIQIIKEISSETPVLLLDDVLSELDESRQEYILNSL 169 Query: 339 TDIGSQIFMTG 349 I + I TG Sbjct: 170 EGIQTLITCTG 180 >gi|113953191|ref|YP_729686.1| recombination protein F [Synechococcus sp. CC9311] gi|113880542|gb|ABI45500.1| DNA replication and repair protein RecF [Synechococcus sp. CC9311] Length = 345 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 85/335 (25%), Positives = 151/335 (45%), Gaps = 22/335 (6%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI- 90 +G NGVGK+N+LE++ L R R + D+ + ++ A ++ AD I Sbjct: 1 MIGSNGVGKSNLLESVELLGSLRSHRSSQDGDLIH-----WDASRALLKAT--CADQQIL 53 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150 +LE R R R + N ++ +L LR + G RR++LDR+V Sbjct: 54 ELELRR-RGGRQAKRNGKSLQRQLDLIGPLRCVGFSALDLHLVRGEPALRRQWLDRVVLQ 112 Query: 151 IDPRHRRRMIDFERLMRGRNRL-----LTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 ++P + + + RL+R R + L+ G + S + QMA + +I+ R+ + Sbjct: 113 LEPVYADLISRYGRLLRQRAQFWRRGGLSSGMEPQALLESFDTQMALVSTRIHRRRLRAL 172 Query: 206 NALSSLIMEYVQK--ENFPHIKL--SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 L L + + E H++L S L G+ + L E ++L + R + Sbjct: 173 ARLEPLAAVWQDRLSEGREHLQLGYSPGSALIGEEQEESWRLSIE--QQLREQRSEEERL 230 Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321 +GPHR D I + GS G+Q+ +++ + +A +L+ G P+LLLD+ Sbjct: 231 GSCRVGPHR-DEIEMRINGTAARRFGSAGQQRTLVLALKMAELQLVGELCGEPPLLLLDD 289 Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + A LD ++ AL V + Q ++ T F+ Sbjct: 290 VLAELDPTRQLALLEAVGE-NHQCLVSATHLDAFE 323 >gi|323140853|ref|ZP_08075766.1| RecF/RecN/SMC N-terminal domain protein [Phascolarctobacterium sp. YIT 12067] gi|322414591|gb|EFY05397.1| RecF/RecN/SMC N-terminal domain protein [Phascolarctobacterium sp. YIT 12067] Length = 438 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 8/95 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGF----RR 58 ++I+ L + FR Y L + F+ + T+ VG+NG GKT I +A++ L P R F R+ Sbjct: 1 MQIERLRLKNFRCYDELDIAFEPKLTVIVGENGKGKTAIFDALAIALEPYLRSFDASGRQ 60 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93 + DV R+ P + ++GME + IKLE Sbjct: 61 ITPQDVRRV--PVYKKDMRHIDGMECHYPVEIKLE 93 >gi|229100793|ref|ZP_04231612.1| DNA replication and repair protein recF [Bacillus cereus Rock3-28] gi|228682622|gb|EEL36680.1| DNA replication and repair protein recF [Bacillus cereus Rock3-28] Length = 183 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + + Sbjct: 45 LSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALSL 103 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSL 358 LA LI + PILLLD++ + LD+ +++ L + + + + T D ++L Sbjct: 104 KLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGRVQTFVTTTSVDGIEHETL 163 Query: 359 NETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 164 KD-AKTIHVTNGTVDC 178 >gi|153831484|ref|ZP_01984151.1| recF protein [Vibrio cholerae 623-39] gi|148873035|gb|EDL71170.1| recF protein [Vibrio cholerae 623-39] Length = 185 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 5/167 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 6 LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65 Query: 70 PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F R+ +D + + + + D S ++I + + +L + L + + Sbjct: 66 SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 P + + +RR F+D VF +P F+RL + RN LL Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALL 170 >gi|144898157|emb|CAM75021.1| Recombinational DNA repair ATPase (RecF [Magnetospirillum gryphiswaldense MSR-1] Length = 71 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 36/50 (72%) Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 DE+ AHLDE +R ALF + + +Q +MTGTD+S+F L + A+F R+++ Sbjct: 15 DEVVAHLDETRRLALFDELAGLNAQSWMTGTDESMFAGLGDRAQFFRVAD 64 >gi|213646832|ref|ZP_03376885.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 258 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/259 (21%), Positives = 114/259 (44%), Gaps = 13/259 (5%) Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 + EL + + + P + +G RR FLD F + + +RL++ RN Sbjct: 6 IAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAA 65 Query: 173 LTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 L + ++ + ++ L +I+ R E +A++ + + Q + P L+ + F Sbjct: 66 LRQVSRYEQ--LRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-F 121 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 G ++ +YA L + D M T GPH++D + D A S G+ Sbjct: 122 QRGWEKET------DYADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQ 174 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-T 350 K+++ + LA ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + Sbjct: 175 LKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAIS 234 Query: 351 DKSVFDSLNETAKFMRISN 369 + V D +E +K + Sbjct: 235 AEHVIDMSDENSKMFTVEK 253 >gi|167508523|gb|ABZ81468.1| recombination protein F [Mycobacterium avium subsp. hominissuis] Length = 289 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 64/261 (24%), Positives = 113/261 (43%), Gaps = 28/261 (10%) Query: 87 DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146 + ++ LE R+ + ++N +R E+ LR P + G ERRR+LD Sbjct: 28 ECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDD 86 Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELG 194 + P D+++++R R LL G D+ W ++++AE G Sbjct: 87 LATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYG 142 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAK-K 250 ++ AR++++N L+ + E + P + + G+ L A +Y + Sbjct: 143 AQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAA 201 Query: 251 LFDG---RKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 L G R+ M R L+GPHR DL + + + + S GE + + + LA L Sbjct: 202 LLSGLAARRDAEMERGMCLVGPHRDDLEL-WLGERVAKGFASHGESWSLALSLRLAAYEL 260 Query: 307 ISNTTGFAPILLLDEISAHLD 327 + P+LLLD++ A LD Sbjct: 261 LRADESD-PVLLLDDVFAELD 280 >gi|148651821|ref|YP_001278914.1| DNA replication and repair protein RecF [Psychrobacter sp. PRwf-1] gi|148570905|gb|ABQ92964.1| DNA replication and repair protein RecF [Psychrobacter sp. PRwf-1] Length = 459 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 120/280 (42%), Gaps = 26/280 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I + RN S+ + Q +FVG NG GKT++LE++ LS G+ FR + R S Sbjct: 5 LSIHQLRNLHSVNIKV-GQCNVFVGANGSGKTSLLESLYLLSRGKSFR---HHQPKRYIS 60 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + G S+ ++ D S L+++ + V L K L + PS Sbjct: 61 HHAAHATVHAKFANG---SSMAIQKAQDAST-ILRLDQQTVYVQSALAKQLPTLLIDPSS 116 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFD-------SS 181 + S RR+ LD + F + P + + ++RL++ RN +L + GY ++ Sbjct: 117 MDVLEIGSSSRRQLLDWITFHVKPGFHAQWLAYQRLLKQRNTILRQSGYLSDYQRQELAA 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 W + A A L E L + ++E + + P I+L + + Sbjct: 177 WDKGL-ANHAALITHYRHEAFEEWQPLFNQLIEQLLPDYAPFIQLRFSAGYNTDL----- 230 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L E ++L D + T +G HR+D+ V + + A Sbjct: 231 PLDELLQQRL----AQDFQTGYTRVGCHRADIQVLWLEDA 266 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 29/46 (63%) Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 P++LLD+I+A LDE + L + ++++ QIF+T D + + + Sbjct: 394 PVVLLDDITAELDERALSILLKTLSELSCQIFITSLDGDIMPQIKQ 439 >gi|313621667|gb|EFR92455.1| DNA replication and repair protein RecF [Listeria innocua FSL S4-378] Length = 152 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 5/139 (3%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D + Sbjct: 11 FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A++EG ++ LE + + ++N + + + + +L + P + Sbjct: 66 EEAKMEGRVVKRGQTVPLELAITQKGKRAKVNHMEQKKLSQYVGNLNVVIFAPEDLSLVK 125 Query: 135 GLSMERRRFLDRMVFAIDP 153 G RRRFL+ + + P Sbjct: 126 GAPGVRRRFLNMEIGQMQP 144 >gi|332976001|gb|EGK12872.1| DNA replication and repair protein RecF [Psychrobacter sp. 1501(2011)] Length = 449 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 123/294 (41%), Gaps = 29/294 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I RN ++ + Q +FVG NG GKT++LE++ LS G+ FR + Sbjct: 5 LSIHHLRNLQAVHIPV-GQCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYISHHA 63 Query: 70 P--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 P + + FA + S+ ++ D S ++++ + V L K L + P Sbjct: 64 PHTTVHAKFA--------SGSSMAIQKAQDAS-SIMRLDQQAVYVQSALTKQLPTLLIDP 114 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDSSWC 183 S I S RR+ LD + F + P + + ++RL++ RN LL + + Sbjct: 115 SSMDILEIGSGSRRQLLDWITFHVKPGFHPQWLSYQRLLKQRNALLKQSPRLSDYQRKEL 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF--- 240 ++ + +A I R + L + + K+ P + F+ +F + Sbjct: 175 AAWDKGLANHAALITHYRQQAFEEWQPLFNDLL-KQLLP----AYAPFIQLRFSAGYNTE 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQK 293 L E ++L D S T IG HR+D+ V + D+A T E K Sbjct: 230 IPLDELLQQRL----AQDCQSGYTRIGCHRADVQVLWVEDEAARQQVNQTSENK 279 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 Q +L G+ +A I N G P++LLD+I+A LDE + L + ++ + Q+F+T D Sbjct: 363 QLPLLAGMEANNAVSIGNDEGL-PLVLLDDITAELDERALSILLKSLSQLSCQVFITSLD 421 Query: 352 KSVF 355 + Sbjct: 422 DDIM 425 >gi|87124943|ref|ZP_01080790.1| RecF protein [Synechococcus sp. RS9917] gi|86167263|gb|EAQ68523.1| RecF protein [Synechococcus sp. RS9917] Length = 344 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 122/292 (41%), Gaps = 18/292 (6%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 +G NGVGK+N+LEA+ L R R + D+ + + A + M D ++ Sbjct: 1 MIGRNGVGKSNLLEAVELLGSLRSHRASQDQDLI-----HWDQSRAVLRAMAAEQD-QLE 54 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 LE R + + V+ R +D L LR ++ G RR++LDR+V + Sbjct: 55 LELRRKGGRQARRNGRVLERQLD-LIGPLRCVGFSALDLQLVRGEPALRRQWLDRVVLQL 113 Query: 152 DPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207 +P + + + RL+R R +L T + QMA + +I+ R + Sbjct: 114 EPVYGDLISRYGRLLRQRAQLWRRQSTATPEREQLLEVFDQQMALVSTRIHRRRRRALAR 173 Query: 208 LSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 L L + + + H L L L+G +++ ++ A +L R ++ Sbjct: 174 LQPLAAAWQHQLSDGHEALELRYEAGSRLEG--EEAEEPWRQAIAAQLLAQRAEEARLGS 231 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315 +GP R D I D S G+Q+ +++ + LA +L+ G P Sbjct: 232 CRVGPQR-DEIALMLDGIAARRFASAGQQRTLVLALKLAELQLVQELWGEPP 282 >gi|116072584|ref|ZP_01469850.1| RecF protein [Synechococcus sp. BL107] gi|116064471|gb|EAU70231.1| RecF protein [Synechococcus sp. BL107] Length = 353 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 132/294 (44%), Gaps = 20/294 (6%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90 + +G NG+GK+N+LEA+ L R R + D+ + P A + G D + Sbjct: 9 LVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWDRP-----LALLRADVGDGD-RL 62 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150 +LE R + + V+ R +D + I + +D + G RR++LDR+V Sbjct: 63 ELELRRRGGRQARRNGKVLDRQLDLIGPLRCIGFSALDLD-LVRGEPALRRQWLDRVVLQ 121 Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI----EAQMAELGVKINIARVEMIN 206 ++P + + + RL+R R++L +++ S + + QMA + +I+ R ++ Sbjct: 122 LEPVYADLISRYTRLLRQRSQLWRSHRQNTAERSGLLDAFDVQMALISTRIHRRRRRALH 181 Query: 207 ALSSLIMEYVQ-----KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 L + + KE ++ LDG+ + L E ++L + R+ + Sbjct: 182 RLEPIAQRWQSHLSSGKERL-ELRYQPGSRLDGEEAEEPWRLAIE--EQLRNQREDEERL 238 Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315 +GPHR D I ++ GS G+Q+ +++G+ LA L+ G P Sbjct: 239 GNCRVGPHR-DEINMVLGESPARRFGSAGQQRSLVLGLKLAELELVKELCGEPP 291 >gi|33863982|ref|NP_895542.1| recombination protein F [Prochlorococcus marinus str. MIT 9313] gi|51316349|sp|Q7V559|RECF_PROMM RecName: Full=DNA replication and repair protein recF gi|33635566|emb|CAE21890.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9313] Length = 365 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 73/312 (23%), Positives = 131/312 (41%), Gaps = 23/312 (7%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 +RNY+ L+L + +G NG+GK+N+LEAI L R R +S D+ Sbjct: 4 YRNYSRLQLELTENRLLVIGPNGIGKSNLLEAIELLGSLRSHRASSDQDLIHWEEQRAL- 62 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHLRISWLVPSMDRI 132 + +AD + KLE R + + R +D + + + ++ + Sbjct: 63 -------LRAIADDTEKLELELRRQGGRQARRNGKTLTRQLDLIGPLRCVGFSALDLN-L 114 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----DSSWCSSIE 187 G RR++LDR+V ++P + + F +L+R R++L + S + + Sbjct: 115 VRGEPALRRQWLDRVVQQLEPIYSDLISRFNKLLRQRSQLWRQWRHIPIQERDSLLDAFD 174 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT----GFLDGKFDQSFCAL 243 QMA + +I+ R + L L + + + +L L L+G+ + L Sbjct: 175 VQMALVSTRIHRRRSRALARLEPLAARWQETLSKHKERLRLDYQPGSQLEGEEAEEPWRL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E +L R + IGPHR ++ + D GS G+Q+ V++ + LA Sbjct: 235 AIE--TQLLGQRSEEERLGSCRIGPHRDEVRLLLNDSEAR-RFGSAGQQRTVVLALKLAE 291 Query: 304 ARLISNTTGFAP 315 L+ G P Sbjct: 292 LELVGELCGEPP 303 >gi|291520351|emb|CBK75572.1| hypothetical protein CIY_30610 [Butyrivibrio fibrisolvens 16/4] Length = 94 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 IK + + FRNY SL + FD TI GDN GKTNILEA ++LS Sbjct: 3 IKSIELENFRNYESLNINFDEHTTILFGDNAQGKTNILEA-AYLS 46 >gi|309805927|ref|ZP_07699959.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 03V1-b] gi|308167703|gb|EFO69850.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 03V1-b] Length = 246 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 9/203 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ + Sbjct: 6 LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F A + G +I L+ + IN + + + + P Sbjct: 63 --FNMKIAGIHGTLCKRNIRFDLKLLISNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D I+ + + + ++++ RN L ++ D + + Sbjct: 121 LSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180 Query: 186 IEAQMAELGVKINIARVEMINAL 208 + Q+A L ++ RV ++ L Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL 203 >gi|392776|gb|AAC43047.1| RecF protein [Caulobacter crescentus CB15] Length = 67 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 29/46 (63%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 L +++FR+Y RL + G NG GKTN+LEAIS LSPG+ Sbjct: 20 LTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGKA 65 >gi|309804875|ref|ZP_07698937.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 09V1-c] gi|308165814|gb|EFO68035.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 09V1-c] Length = 241 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 9/203 (4%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ + Sbjct: 6 LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 F A + G +I L+ + IN + + + + P Sbjct: 63 --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185 + G RRRF+D I+ + + + ++++ RN L ++ D + + Sbjct: 121 LSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180 Query: 186 IEAQMAELGVKINIARVEMINAL 208 + Q+A L ++ RV ++ L Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL 203 >gi|167508533|gb|ABZ81473.1| recombination protein F [Mycobacterium avium subsp. avium] gi|167508535|gb|ABZ81474.1| recombination protein F [Mycobacterium avium subsp. silvaticum] Length = 289 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 27/244 (11%) Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++N +R E+ LR P + G ERRR+LD + P D++ Sbjct: 44 RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103 Query: 164 RLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSL 211 +++R R LL G D+ W ++++AE G ++ AR++++N L+ Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYGAQLMAARIDLVNQLAPE 159 Query: 212 IMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEY----AKKLFDGRKMDSMSR-R 263 + E + P + + G+ L A +Y R+ M R Sbjct: 160 V-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGM 218 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 L+GPHR DL + + + + S GE + + + LA L+ P+LLLD++ Sbjct: 219 CLVGPHRDDLEL-WLGERVAKGFASHGESWSLALSLRLAAYELLRADESD-PVLLLDDVF 276 Query: 324 AHLD 327 A LD Sbjct: 277 AELD 280 >gi|157060586|gb|ABV03299.1| RecF [Chlamydia trachomatis] gi|157060588|gb|ABV03300.1| RecF [Chlamydia trachomatis] gi|157060590|gb|ABV03301.1| RecF [Chlamydia trachomatis] Length = 121 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 34 GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93 G N GKTN+LEA+ LS GR FR + D R G+ FF +E + ++ L Sbjct: 4 GLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF-----IEAVFSHKEVFHTLS 58 Query: 94 TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148 + D+ + + + I + EL + I G ERRRFLD ++ Sbjct: 59 IQVDKKGKKILFDGAPITKLSELVGLFPVILFSIKDIAIIEGSPSERRRFLDLLL 113 >gi|157060562|gb|ABV03287.1| RecF [Chlamydia trachomatis] gi|157060564|gb|ABV03288.1| RecF [Chlamydia trachomatis] gi|157060566|gb|ABV03289.1| RecF [Chlamydia trachomatis] gi|157060568|gb|ABV03290.1| RecF [Chlamydia trachomatis] gi|157060570|gb|ABV03291.1| RecF [Chlamydia trachomatis] gi|157060572|gb|ABV03292.1| RecF [Chlamydia trachomatis] gi|157060574|gb|ABV03293.1| RecF [Chlamydia trachomatis] gi|157060576|gb|ABV03294.1| RecF [Chlamydia trachomatis] gi|157060578|gb|ABV03295.1| RecF [Chlamydia trachomatis] gi|157060580|gb|ABV03296.1| RecF [Chlamydia trachomatis] gi|157060582|gb|ABV03297.1| RecF [Chlamydia trachomatis] gi|157060584|gb|ABV03298.1| RecF [Chlamydia trachomatis] Length = 122 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 34 GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93 G N GKTN+LEA+ LS GR FR + D R G+ FF +E + ++ L Sbjct: 4 GLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF-----IEAVFSHKEVFHTLS 58 Query: 94 TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148 + D+ + + + I + EL + I G ERRRFLD ++ Sbjct: 59 IQVDKKGKKILFDGAPITKLSELVGLFPVILFSIKDIAIIEGSPSERRRFLDLLL 113 >gi|291547607|emb|CBL20715.1| Recombinational DNA repair ATPase (RecF pathway) [Ruminococcus sp. SR1/5] Length = 157 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 19/153 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + ++ FRNY SL + FD I GDN GKTNILEA+ + + + ++ R Sbjct: 3 IESIRLNNFRNYESLEMNFDQGTNILYGDNAQGKTNILEAVYLAGTSKSHKGSKDREMIR 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + + + M D+S K++ R +++ + + IN + IR EL L + Sbjct: 63 -----FENEESHIRMMVKKGDLSYKIDMHLRKNKA-KGVAINGLPIRKAREL---LGVVN 113 Query: 125 LVPSMDRIFSGLSMERRR--------FLDRMVF 149 LV + RI M+R R F+ MVF Sbjct: 114 LVFFLRRILILSRMDREREDVFWIRSFVSWMVF 146 >gi|167508531|gb|ABZ81472.1| recombination protein F [Mycobacterium avium subsp. avium ATCC 25291] Length = 289 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 27/244 (11%) Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++N +R E+ LR P + G ERRR+LD + P D++ Sbjct: 44 RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103 Query: 164 RLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSL 211 +++R R LL G D+ W ++++AE G ++ AR++++N L+ Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYGAQLMAARIDLVNQLAPE 159 Query: 212 IMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDG----RKMDSMSR-R 263 + E + P + + G+ L A +Y + R+ M R Sbjct: 160 V-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGM 218 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 L+GPHR DL + + + + S GE + + + LA L+ P+LLLD++ Sbjct: 219 CLVGPHRDDLEL-WLGERVPKGFASHGESWSLALSLRLAAYELLRADESD-PVLLLDDVF 276 Query: 324 AHLD 327 A LD Sbjct: 277 AELD 280 >gi|15835875|ref|NP_300399.1| hypothetical protein CPj0340 [Chlamydophila pneumoniae J138] gi|8978714|dbj|BAA98550.1| frame-shift with CPj0339 [Chlamydophila pneumoniae J138] Length = 214 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 4/185 (2%) Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + Q+ + G ++I R LS L E + L L D S A+ EE Sbjct: 28 DEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNNLKEQLALKFKSSLIKNSDISETAVAEE 87 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + K+L D T +GPHR D ++ ++ S G++ +L + LA Sbjct: 88 FHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQMPVS-QFSSEGQKHSLLAILRLAECLY 146 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + + +P++ LD+I A LD ++ L +G Q +T T + L +T+ + Sbjct: 147 LKQSHHVSPLVCLDDIHAGLDNERVGQLLDPAPTLG-QTLITSTH--MHGELPKTSLVLS 203 Query: 367 ISNHQ 371 I N Q Sbjct: 204 IENAQ 208 >gi|167508541|gb|ABZ81477.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis] gi|167508543|gb|ABZ81478.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis] Length = 289 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 24/259 (9%) Query: 87 DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146 + ++ LE R+ + ++N + +R E+ LR P + G ERRR+LD Sbjct: 28 ECAVDLEIAAGRANKA-RLNRLPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDD 86 Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLLTE----------GYFDSSWCSSIEAQMAELGVK 196 + P D+++++R R LL G D+ ++++AE G + Sbjct: 87 LATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGALDT--LDVWDSRLAEYGAQ 144 Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFD 253 + AR++++N L+ + E + P + + G+ L A +Y + Sbjct: 145 LMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAALL 203 Query: 254 G----RKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 R+ + R L+GPHR DL + + + + S GE + + + LA L+ Sbjct: 204 AGLAARRDAELERGMCLVGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAFELLR 262 Query: 309 NTTGFAPILLLDEISAHLD 327 P+LLLD++ A LD Sbjct: 263 ADESD-PVLLLDDVFAELD 280 >gi|229083319|ref|ZP_04215681.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44] gi|228699994|gb|EEL52617.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44] Length = 125 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 TLIGPHR DL K + + GS G+Q+ + + LA LI + PILLLD++ Sbjct: 11 TLIGPHRDDLQFFVNGKNVQV-FGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVL 69 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGT 350 + LD+ +++ L + Q F+T T Sbjct: 70 SELDDYRQSHLLNTIQG-KVQTFVTTT 95 >gi|167508525|gb|ABZ81469.1| recombination protein F [Mycobacterium avium subsp. hominissuis] Length = 289 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 27/244 (11%) Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++N +R E+ LR P + G ERRR+LD + P D++ Sbjct: 44 RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103 Query: 164 RLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSL 211 +++R R LL G D+ W ++++AE G ++ AR++++N L+ Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYGAQLMAARIDLVNQLAPE 159 Query: 212 IMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDG----RKMDSMSR-R 263 + E + P + + G+ L A +Y + R+ + R Sbjct: 160 V-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGM 218 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 L+GPHR DL + + + + S GE + + + LA L+ P+LLLD++ Sbjct: 219 CLVGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAYELLRADESD-PVLLLDDVF 276 Query: 324 AHLD 327 A LD Sbjct: 277 AELD 280 >gi|303231370|ref|ZP_07318104.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] gi|302513966|gb|EFL55974.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] Length = 566 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++++ I +RN + L F FVG+N VGK+N L+ + + RGF+ + +ADV R Sbjct: 5 MEWIKIENYRNLVDIELHFHNDINYFVGENAVGKSNFLDLLEQMMNARGFQESDFADVHR 64 >gi|167508521|gb|ABZ81467.1| recombination protein F [Mycobacterium avium subsp. hominissuis] Length = 289 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 23/242 (9%) Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++N +R E+ LR P + G ERRR+LD + P D++ Sbjct: 44 RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103 Query: 164 RLMRGRNRLLTE----------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213 +++R R LL G D+ ++++AE G ++ AR++++N L+ + Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDT--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV- 160 Query: 214 EYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDG----RKMDSMSRRT-L 265 E + P + + G+ L A +Y + R+ + R L Sbjct: 161 EKAYQLLAPGSRAASIGYRSSLGAAAAAEVNAGDRDYLEAALLAGLAARRYAELERGVCL 220 Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 +GPHR DL + + + + S GE + + + LA L+ P+LLLD++ A Sbjct: 221 VGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAYELLRADES-DPVLLLDDVFAE 278 Query: 326 LD 327 LD Sbjct: 279 LD 280 >gi|241518212|ref|YP_002978840.1| hypothetical protein Rleg_5469 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862625|gb|ACS60289.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 763 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF--LSPGR-GFRRASY 61 ++IKF+ +S FR S + FD + TIFVG N GKT+ + A+ + LSP R R + Sbjct: 1 MRIKFVEVSNFRKLKSTHIDFDKKTTIFVGANNSGKTSAMVALRYFLLSPNRLALRDITI 60 Query: 62 ADVTRI 67 A+ T+I Sbjct: 61 ANWTKI 66 >gi|303229440|ref|ZP_07316230.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] gi|302515976|gb|EFL57928.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] Length = 564 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++++ I +RN + L F FVG+N VGK+N L+ + + RGF+ + +ADV R Sbjct: 3 MEWIKIENYRNLVDVELHFHNDINYFVGENAVGKSNFLDLLEQMMNARGFQESDFADVHR 62 >gi|167508539|gb|ABZ81476.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis] Length = 289 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 27/244 (11%) Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++N +R E+ LR P + G ERRR+LD + P D++ Sbjct: 44 RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103 Query: 164 RLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSL 211 +++R R LL G D+ W ++++AE G ++ AR++++N L+ Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYGAQLMAARIDLVNQLAPE 159 Query: 212 IMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDG----RKMDSMSR-R 263 + E + P + + G+ L A +Y + R+ + R Sbjct: 160 V-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGM 218 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 L+GPHR DL + + + + S GE + + + LA L+ P+LLLD++ Sbjct: 219 CLVGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAFELLRADESD-PVLLLDDVF 276 Query: 324 AHLD 327 A LD Sbjct: 277 AELD 280 >gi|313893078|ref|ZP_07826655.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442431|gb|EFR60846.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] Length = 557 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 9/84 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK+++I +RN A + L F FVG+N VGK+N L+ + + GF + DV + Sbjct: 3 IKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIVMECHGFNEHDFTDVHK 62 Query: 67 ---------IGSPSFFSTFARVEG 81 +G ++ S F EG Sbjct: 63 PIRIDFELSLGELNYKSMFTPNEG 86 >gi|213021784|ref|ZP_03336231.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 106 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I +FRN + L VG NG GKT++LEAI L GR FR V R + Sbjct: 8 IKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQEA 67 Query: 72 FFSTFARVEGMEGLADISIKLETRDDRSVR 101 F R++G E I + + + D VR Sbjct: 68 FV-LHGRLQGEERETSIGLTKDKQGDSKVR 96 >gi|117620939|ref|YP_856566.1| RecF/RecN/SMC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562346|gb|ABK39294.1| RecF/RecN/SMC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 556 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 83/358 (23%), Positives = 150/358 (41%), Gaps = 54/358 (15%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---------SPG 53 NR + +N+ FR + S+++ ++ T+F+G NG+GKT I++AIS + G Sbjct: 68 NRFVLSEINLVNFRRFDSIKVRLESNVTVFIGGNGIGKTTIIDAISKVLSWIVSGIEKEG 127 Query: 54 RGFRRASYADVTRIGSPSFFSTFARVE-GMEGLADISI---KLETRDDRSVRCLQINDV- 108 + Y ++ F A E G++ + +I KL T + R +++ + Sbjct: 128 KNGSPIKYQEINNNEQCYFSDVNALFEFGIKTKVNGTISRSKLGTAEKRDSNVVELKSIA 187 Query: 109 -VIRVVDELNKHLRISWLVPSMDR----------IFSGLSMERRRFLDRMVFAIDPRHRR 157 V RV++ +N +L S+ R I S+ R+ D A+D Sbjct: 188 NVWRVINSINPINLPIFLCYSIARSHPAKRSNRPIVKEPSLLRKSRFDAYSGALD--GAG 245 Query: 158 RMIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216 ++ DF E + + G+FD +EAQ+ +L + LSS+ +++ Sbjct: 246 KIDDFIEWFIELHKKTSNNGFFD---IDLLEAQVRKLKI------------LSSMDADFI 290 Query: 217 QKENFPHIKLSL--TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274 + + I LSL DG+F+ + ++ + ++++ T G SD + Sbjct: 291 EMYDQKIIDLSLAKNNMQDGEFENNLKQMRTVVDAVVKVVPSIENIWVETSSG---SDEV 347 Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARL------ISNTTGFAPILLLDEISAHL 326 D I + Q+V+L + RL ISN I+L+DEI HL Sbjct: 348 KVRNDGGIVNFSQLSDGQRVLLSLVADLARRLVMLNPNISNPLEGQGIVLIDEIELHL 405 >gi|238019008|ref|ZP_04599434.1| hypothetical protein VEIDISOL_00870 [Veillonella dispar ATCC 17748] gi|237864492|gb|EEP65782.1| hypothetical protein VEIDISOL_00870 [Veillonella dispar ATCC 17748] Length = 576 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYADVT 65 IS +RN + +VFD +G+N +GKTNILE ++ LS G+ F+ A +AD++ Sbjct: 13 ISNYRNLSGQSMVFDKDLNYIIGENNIGKTNILELLNIILSEGK-FKEADFADLS 66 >gi|167508529|gb|ABZ81471.1| recombination protein F [Mycobacterium avium subsp. hominissuis] Length = 289 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 23/242 (9%) Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++N +R E+ LR P + G ERRR+LD + P D++ Sbjct: 44 RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103 Query: 164 RLMRGRNRLLTE----------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213 +++R R LL G ++ ++++AE G ++ AR++++N L+ + Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALET--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV- 160 Query: 214 EYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTL 265 E + P + + G+ L A +Y L D R + L Sbjct: 161 EKAYQLLAPGSRAASIGYRSSLGAAAAAEVNAGDRDYLEAALLAGLADRRDAELERGMCL 220 Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 +GPHR DL + + + + S GE + + + LA L+ P+LLLD++ A Sbjct: 221 VGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAYELLRADES-DPVLLLDDVFAE 278 Query: 326 LD 327 LD Sbjct: 279 LD 280 >gi|167508537|gb|ABZ81475.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis] Length = 289 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 60/261 (22%), Positives = 109/261 (41%), Gaps = 28/261 (10%) Query: 87 DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146 + ++ LE R+ + ++N +R E+ LR P + G ERRR+LD Sbjct: 28 ECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDD 86 Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELG 194 + P D+++++R R LL G D+ W ++++AE G Sbjct: 87 LATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYG 142 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKL 251 ++ AR++++N L+ + E + P + + G+ L A +Y + Sbjct: 143 AQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAA 201 Query: 252 FDG-----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 R + L+GPHR DL + + + + S GE + + + LA L Sbjct: 202 LLAGLAAHRDAELERGMCLVGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAFEL 260 Query: 307 ISNTTGFAPILLLDEISAHLD 327 + P+LLLD++ A LD Sbjct: 261 LRADESD-PVLLLDDVFAELD 280 >gi|22036085|dbj|BAC06579.1| hypothetical ATP-binding protein [Vibrio parahaemolyticus] gi|209364500|dbj|BAG74739.1| putative nucleotide-binding protein [Vibrio parahaemolyticus] Length = 560 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 10/100 (10%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS----------FLSP 52 N++ + L + +FR + LR+ F+ + T+ +G+NG GKT +L +IS Sbjct: 70 NKLNLVQLELFDFRKFKHLRISFEPKLTVIIGNNGQGKTALLNSISKTLSWLNANILKED 129 Query: 53 GRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKL 92 G+G R ++ D+ R + F GL I ++L Sbjct: 130 GQGQRLSATRDIRRNSEAPYTDVFTEFSFGSGLKRIPVRL 169 >gi|282850579|ref|ZP_06259958.1| hypothetical protein HMPREF1035_1912 [Veillonella parvula ATCC 17745] gi|282580072|gb|EFB85476.1| hypothetical protein HMPREF1035_1912 [Veillonella parvula ATCC 17745] Length = 555 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK+++I +RN A + L F FVG+N VGK+N L+ + + GF + + DV + Sbjct: 3 IKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGFIESDFTDVNK 62 >gi|294792205|ref|ZP_06757353.1| hypothetical protein HMPREF0874_00653 [Veillonella sp. 6_1_27] gi|294457435|gb|EFG25797.1| hypothetical protein HMPREF0874_00653 [Veillonella sp. 6_1_27] Length = 564 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK+++I +RN A + L F FVG+N VGK+N L+ + + GF + + DV + Sbjct: 12 IKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGFIESDFTDVNK 71 >gi|294794069|ref|ZP_06759206.1| hypothetical protein HMPREF0873_00663 [Veillonella sp. 3_1_44] gi|294455639|gb|EFG24011.1| hypothetical protein HMPREF0873_00663 [Veillonella sp. 3_1_44] Length = 564 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK+++I +RN A + L F FVG+N VGK+N L+ + + GF + + DV + Sbjct: 12 IKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGFIESDFTDVNK 71 >gi|269798340|ref|YP_003312240.1| ATP-dependent endonuclease of the OLD family- like protein [Veillonella parvula DSM 2008] gi|269094969|gb|ACZ24960.1| ATP-dependent endonuclease of the OLD family- like protein [Veillonella parvula DSM 2008] Length = 555 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK+++I +RN A + L F FVG+N VGK+N L+ + + GF + + DV + Sbjct: 3 IKWMHIENYRNLADVTLSFHNDINYFVGENSVGKSNFLDLLEIIMECHGFIESDFTDVNK 62 >gi|167508527|gb|ABZ81470.1| recombination protein F [Mycobacterium avium subsp. hominissuis] Length = 289 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 35/248 (14%) Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++N +R E+ LR P + G ERRR+LD + P D++ Sbjct: 44 RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103 Query: 164 RLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSL 211 +++R R LL G D+ W ++++AE G ++ AR++++N L+ Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYGAQLMAARIDLVNQLAPE 159 Query: 212 IMEYVQKENFPHIKLSLTGFL------------DGKFDQSFCALKEEYAKKLFDGRKMDS 259 + E + P + + G+ DG D AL A + R + Sbjct: 160 V-EKAYQLLAPGSRAASIGYRSSLGVAASAEVNDGDRDYLEAALLAGLAAR----RDAEL 214 Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 L+GPHR DL + + + + S GE + + + LA L+ P+LLL Sbjct: 215 ERGMCLVGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAYELLRADESD-PVLLL 272 Query: 320 DEISAHLD 327 D++ A LD Sbjct: 273 DDVFAELD 280 >gi|86159644|ref|YP_466429.1| ATP-dependent OLD family endonuclease [Anaeromyxobacter dehalogenans 2CP-C] gi|85776155|gb|ABC82992.1| ATP-dependent endonuclease of the OLD family-like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 615 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASYADVTR 66 L ++ FR++ + FD T+ G+N GKTN+LEA+ L+P GR R D+TR Sbjct: 6 LQLTRFRSFRDGTVYFDETLTVLAGENNSGKTNVLEALRLLTPPSDGRVVRWPEPRDITR 65 >gi|332071496|gb|EGI81990.1| DNA replication and repair recF domain protein [Streptococcus pneumoniae GA41301] Length = 63 Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 33/51 (64%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHR 53 >gi|320532811|ref|ZP_08033588.1| recombination protein F [Actinomyces sp. oral taxon 171 str. F0337] gi|320134962|gb|EFW27133.1| recombination protein F [Actinomyces sp. oral taxon 171 str. F0337] Length = 349 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 + L++ +FR+Y SL L + + FVG NG GKTN++EAI +L+ Sbjct: 3 VSDLSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLA 47 >gi|319648521|ref|ZP_08002737.1| hypothetical protein HMPREF1012_03776 [Bacillus sp. BT1B_CT2] gi|317389600|gb|EFV70411.1| hypothetical protein HMPREF1012_03776 [Bacillus sp. BT1B_CT2] Length = 85 Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 5/75 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + +S +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ R Sbjct: 3 IQNITLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIR 62 Query: 67 IGSPSFFSTFARVEG 81 + +A++EG Sbjct: 63 -----WDEDYAKIEG 72 >gi|291333914|gb|ADD93594.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 160 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 3/109 (2%) Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLA 302 +E++ +L + + DS + + +GPHR DL+ D + K+ I S GEQK++++ L Sbjct: 38 EEDFKNELREVYQKDSEVKFSTVGPHRLDLLYDINNVKSGDIL--SRGEQKLLILLTILG 95 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + N I L+D++ + LDE+ ++ D Q F++ D Sbjct: 96 FNQHMHNLGNKHSIFLVDDLPSELDEENFLKCLELILDAPGQKFVSSID 144 >gi|325066319|ref|ZP_08124992.1| DNA replication and repair protein RecF [Actinomyces oris K20] Length = 81 Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L++ +FR+Y SL L + + FVG NG GKTN++EAI +L+ R + + R + Sbjct: 6 LSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTALVRRAA 65 Query: 70 P 70 P Sbjct: 66 P 66 >gi|188586140|ref|YP_001917685.1| ATP-dependent endonuclease family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350827|gb|ACB85097.1| ATP-dependent endonuclease family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 586 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFR 57 +I++ + I+ FR L+F +HT+FVGDN GK+ ILEA+ L P R FR Sbjct: 3 KIRVAKIKINNFRGIKFSELIF-PEHTVFVGDNNSGKSTILEALDLTLGPERLFR 56 >gi|270263187|ref|ZP_06191457.1| transporter [Serratia odorifera 4Rx13] gi|270042875|gb|EFA15969.1| transporter [Serratia odorifera 4Rx13] Length = 539 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 16/96 (16%) Query: 18 YASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-SPGRGF--RRASYADVTR-------- 66 + L L FD QH VG NGVGKT +L I+ L PG G AS A V + Sbjct: 26 FGPLDLTFDQQHCGLVGRNGVGKTRLLRLIAGLDQPGSGHVETHASLAYVAQQPEIAAQI 85 Query: 67 -----IGSPSFFSTFARVEGMEGLADISIKLETRDD 97 +G F+ AR+E LAD +LE + D Sbjct: 86 TLAQLLGYGEVFAALARIEQGRPLADDIDRLEGQWD 121 >gi|213857449|ref|ZP_03384420.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 188 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 10/184 (5%) Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++ L +I+ R E +A++ + + Q + P L+ + F G ++ + Sbjct: 9 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 60 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 61 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 119 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 120 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 179 Query: 366 RISN 369 + Sbjct: 180 TVEK 183 >gi|170590714|ref|XP_001900116.1| SMC proteins Flexible Hinge Domain containing protein [Brugia malayi] gi|158592266|gb|EDP30866.1| SMC proteins Flexible Hinge Domain containing protein [Brugia malayi] Length = 1208 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%) Query: 1 MTNRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 MT ++IK + I F++YA +++ FDAQ G NG GK+NIL+AI F+ Sbjct: 1 MTAGMRIKRIEIDGFKSYAQRQIIDGFDAQFNAITGLNGSGKSNILDAICFV 52 >gi|300707107|ref|XP_002995776.1| hypothetical protein NCER_101251 [Nosema ceranae BRL01] gi|239604988|gb|EEQ82105.1| hypothetical protein NCER_101251 [Nosema ceranae BRL01] Length = 871 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Query: 6 KIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56 KIK L I+ F++Y S ++ FD+ T +G NG GK+NIL+A+ F+ + + Sbjct: 3 KIKSLEITNFKSYKSSHVIPFDSHFTCIIGPNGSGKSNILDAMVFVMTNKPY 54 >gi|313576854|gb|ADR67028.1| hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae] Length = 769 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56 +T +I ++F+ + +FR ++L D + TI VG N GKT+IL A+ FL+ G F Sbjct: 10 LTGQISLRFVELCQFRRLGKVQLEVDPKTTILVGANNSGKTSILAALRHFLADGSPF 66 >gi|254507673|ref|ZP_05119805.1| ATPase [Vibrio parahaemolyticus 16] gi|219549370|gb|EED26363.1| ATPase [Vibrio parahaemolyticus 16] Length = 583 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 4 RIKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAI 47 +KIK +NI FRN+ SL L FD + VG NG GKT +L+AI Sbjct: 91 EVKIKEINIENFRNFDSLFLSDFDPNINVIVGTNGAGKTTLLDAI 135 >gi|225011183|ref|ZP_03701644.1| DNA replication and repair protein RecF [Flavobacteria bacterium MS024-3C] gi|225004693|gb|EEG42654.1| DNA replication and repair protein RecF [Flavobacteria bacterium MS024-3C] Length = 164 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321 + T +G H+ DL + I GS G+QK L+ + LA I + PILLLD+ Sbjct: 54 QYTSVGIHKDDLQFELEGHPIK-KFGSQGQQKSFLIALKLAQFHFIKEKSNTTPILLLDD 112 Query: 322 ISAHLDEDKRNALFRIVTDIG-SQIFMTGT 350 I LD + L +V D QIF++ T Sbjct: 113 IFDKLDAQRVAQLLGLVNDHAYGQIFISDT 142 >gi|329765638|ref|ZP_08257212.1| SMC domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137882|gb|EGG42144.1| SMC domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 692 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +F +++ RL F T+FVG NG GK++I++AI+F G+ R+++ + R Sbjct: 2 ITAIELGDFLSHSQTRLEFGNGVTVFVGQNGAGKSSIIDAITFALFGQHTRKSNKGLIKR 61 Query: 67 IGSPSFFSTFARVE 80 GS FA+VE Sbjct: 62 -GSN---QGFAKVE 71 >gi|302335014|ref|YP_003800221.1| hypothetical protein Olsu_0209 [Olsenella uli DSM 7084] gi|301318854|gb|ADK67341.1| conserved hypothetical protein [Olsenella uli DSM 7084] Length = 520 Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63 +KI+ + I+ FR YAS V T+FVG N +GK+++LEA+ F + G+G + +D Sbjct: 1 MKIRSVEITNFRGYASETEVAMDDLTVFVGKNDIGKSSVLEALDIFFNDGKGAVKFDKSD 60 Query: 64 VT 65 + Sbjct: 61 IN 62 >gi|284161186|ref|YP_003399809.1| SMC domain protein [Archaeoglobus profundus DSM 5631] gi|284011183|gb|ADB57136.1| SMC domain protein [Archaeoglobus profundus DSM 5631] Length = 868 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 29/42 (69%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 IK++ I F+++ S R+ FD + VG NG GKT+ILEAI+ Sbjct: 3 IKYVEIENFKSHRSSRVEFDRGVNLIVGRNGAGKTSILEAIA 44 >gi|269926523|ref|YP_003323146.1| chromosome segregation protein SMC [Thermobaculum terrenum ATCC BAA-798] gi|269790183|gb|ACZ42324.1| chromosome segregation protein SMC [Thermobaculum terrenum ATCC BAA-798] Length = 1181 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 +KI L I F+++++ L+ FD T VG NG GK+NILEAI ++ + + R Sbjct: 1 MKINSLKIQGFKSFSNHTLLEFDHGITAIVGPNGSGKSNILEAIRWVLGEQSYSLLRSKK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96 DV GSP + G+A++ I ++ D Sbjct: 61 SEDVIWAGSPG--------KPRAGMAEVEISIDNHD 88 >gi|298375964|ref|ZP_06985920.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298267001|gb|EFI08658.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 573 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 2/38 (5%) Query: 13 SEFRNYASLRLVFDAQHTIFV--GDNGVGKTNILEAIS 48 SEFRN L L FD+ + +V G+NG GKTNILEA+S Sbjct: 10 SEFRNLEGLNLRFDSTNDTYVIIGNNGTGKTNILEALS 47 >gi|262164060|ref|ZP_06031799.1| hypothetical protein VMA_000501 [Vibrio mimicus VM223] gi|262027588|gb|EEY46254.1| hypothetical protein VMA_000501 [Vibrio mimicus VM223] Length = 768 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56 IK++F+ +S FR ++L D + TI VG N GKT+IL A+ FL+ G F Sbjct: 14 IKLRFVELSNFRRLGKVQLNIDEKTTILVGANNSGKTSILAALRHFLADGSPF 66 >gi|238762723|ref|ZP_04623692.1| hypothetical protein ykris0001_8990 [Yersinia kristensenii ATCC 33638] gi|238699028|gb|EEP91776.1| hypothetical protein ykris0001_8990 [Yersinia kristensenii ATCC 33638] Length = 808 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56 ++ +I ++F+ + +FR ++L D + TI VG N GKT+IL A+ FL+ G F Sbjct: 49 LSGQISLRFVELCQFRRLGKVQLEIDPKTTILVGANNSGKTSILAALRHFLADGSSF 105 >gi|290968541|ref|ZP_06560080.1| hypothetical protein HMPREF0889_1676 [Megasphaera genomosp. type_1 str. 28L] gi|290781537|gb|EFD94126.1| hypothetical protein HMPREF0889_1676 [Megasphaera genomosp. type_1 str. 28L] Length = 558 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK ++I +RN + L F VG+N +GK++ L +S + G+ YADVTR Sbjct: 3 IKSMHIENYRNLRDVTLHFHESMNYLVGENAIGKSSFLRLLSLICKGQVIPEQDYADVTR 62 >gi|1213060|emb|CAA63915.1| recf [Mycobacterium smegmatis str. MC2 155] Length = 155 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 12/110 (10%) Query: 250 KLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + ++ +D+++RR L+GPHR DL + D+ S GE + + + Sbjct: 18 EFYEAALLDALARRRDAELERGVCLVGPHRDDLELRLGDQPAK-GFASHGESWSMALALR 76 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 L L+ + G P+LLLD++ A LD +R AL V Q+ +T Sbjct: 77 LGAYELLC-SDGVEPVLLLDDVFAELDTSRRRALA-TVAGSAEQVLVTAA 124 >gi|313576872|gb|ADR67045.1| hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae] Length = 318 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56 ++ +I ++F+ + +FR ++L D + TI VG N GKT+IL A+ FL+ G F Sbjct: 10 LSGQISLRFVELCQFRRLGKVQLEIDPKTTILVGANNSGKTSILAALRHFLADGSSF 66 >gi|308450490|ref|XP_003088315.1| hypothetical protein CRE_15840 [Caenorhabditis remanei] gi|308248036|gb|EFO91988.1| hypothetical protein CRE_15840 [Caenorhabditis remanei] Length = 160 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFAPILLLDEI 322 TL+GPHR DL+++ + + S GE + + L A L+ + G P++LLD++ Sbjct: 48 TLVGPHRDDLVLELNGLPVK-GYASHGESWSFALALRLGMAVLLRGESAGGDPVILLDDV 106 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 A LD +R+ L V Q+ +T +V + + E + RI Sbjct: 107 FAELDTRRRSKLMSAVQSF-EQVIVT---AAVEEDIPEGIAWHRIG 148 >gi|317472421|ref|ZP_07931746.1| DNA replication and repair protein RecF [Anaerostipes sp. 3_2_56FAA] gi|316900141|gb|EFV22130.1| DNA replication and repair protein RecF [Anaerostipes sp. 3_2_56FAA] Length = 130 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + +RNY L + F + I GDN GKTNILEA+ + + R + ++ R Sbjct: 3 IQSLELKNYRNYDRLIIEFSSGTNILYGDNAQGKTNILEAVYLGATTKSHRGSKDKEIIR 62 Query: 67 IG 68 G Sbjct: 63 FG 64 >gi|324501951|gb|ADY40863.1| Structural maintenance of chromosomes protein 2 [Ascaris suum] Length = 1200 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 ++IK + I F++YA ++V FDAQ G NG GK+NIL+AI F+ Sbjct: 1 MRIKKIEIDGFKSYAQRQVVDGFDAQFNAITGLNGSGKSNILDAICFV 48 >gi|325067218|ref|ZP_08125891.1| DNA replication and repair protein RecF [Actinomyces oris K20] Length = 176 Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 8/151 (5%) Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 SSL+ E PH + + + D++ A + E A R++D + L+G Sbjct: 25 SSLLTHEGHPEPDPHDESAWLAGEETLLDETALATRLESAMGELHAREIDRGA--NLVGA 82 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFA----PILLLDEIS 323 HR DL + + S GEQ + + + LA ++ ++ + P+L+LD++ Sbjct: 83 HRDDLSL-FLTGLPARGFASHGEQWSLALALRLASYDMLRTDVDAYGGDGEPVLILDDVF 141 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 A LDE +R AL ++V + D V Sbjct: 142 ASLDEQRRRALAQMVAGAQQVLLTAAVDDDV 172 >gi|153831514|ref|ZP_01984181.1| DNA replication and repair protein RecF [Vibrio cholerae 623-39] gi|148873003|gb|EDL71138.1| DNA replication and repair protein RecF [Vibrio cholerae 623-39] Length = 154 Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 58/107 (54%), Gaps = 2/107 (1%) Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 T GP+++DL + + S G+ K+++ + +A + ++ TG I L+D+ + Sbjct: 43 TFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQGQHLTELTGKQCIYLIDDFA 101 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRISN 369 + LD +R L + G+Q+F++ T+ V D L+E++K +++ Sbjct: 102 SELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSKTFHVAH 148 >gi|27379743|ref|NP_771272.1| hypothetical protein bll4632 [Bradyrhizobium japonicum USDA 110] gi|27352896|dbj|BAC49897.1| bll4632 [Bradyrhizobium japonicum USDA 110] Length = 520 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59 + +K+K L IS FR A +V A HT+ VG N VGK+ + EA+ L P R +RR Sbjct: 27 HEVKVKRLTISNFRGVAH-GVVHLAGHTLLVGGNNVGKSTVCEALDLVLGPERLYRRP 83 >gi|167042367|gb|ABZ07095.1| putative RecF/RecN/SMC N terminal domain protein [uncultured marine crenarchaeote HF4000_ANIW97M7] Length = 686 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68 F ++ L FD T+F+G+NG GK++I+EAI+F G+ R A DV R G Sbjct: 10 FLSHKDTELSFDNGVTVFIGENGAGKSSIIEAITFALFGKTTRGA-IEDVIRDG 62 >gi|171915571|ref|ZP_02931041.1| ATPase [Verrucomicrobium spinosum DSM 4136] Length = 435 Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 ++I + I FR L L FD + T+ VGDNG GKT+IL A+S Sbjct: 1 MRIVSIQIDNFRGIKHLGLEFDPRFTLLVGDNGSGKTSILSALS 44 >gi|153869104|ref|ZP_01998792.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152074341|gb|EDN71205.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 446 Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 26/44 (59%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 +KI + I FR L L D Q T+ VG+N GKT IL+AI+ Sbjct: 1 MKISHITIENFRAIKKLDLPLDPQLTVLVGNNAAGKTTILDAIA 44 >gi|313611868|gb|EFR86327.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL F2-208] Length = 70 Score = 43.1 bits (100), Expect = 0.077, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 8 LRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKD 59 >gi|148243191|ref|YP_001228348.1| recombination protein F [Synechococcus sp. RCC307] gi|147851501|emb|CAK28995.1| DNA replication and repair protein RecF [Synechococcus sp. RCC307] Length = 342 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 82/350 (23%), Positives = 159/350 (45%), Gaps = 31/350 (8%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 +G+NG GK+N+LEA+ L+ R R + D+ + G S S G E +++I+ Sbjct: 1 MLGNNGEGKSNLLEAVELLASLRSHRCSQDRDLIQRGETS--SRLKAWVGEEATDELAIE 58 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME--------RRRF 143 L + R V+ N ++ +L LR FS L + RR + Sbjct: 59 LRRQGGRRVQ---RNGKLLERHADLIGPLRCV--------GFSALDLSLVRDEPAGRRDW 107 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIARV 202 LDR+V ++P + + RL+R R++LL + + + Q+A +G +++ R Sbjct: 108 LDRVVQQLEPVYGELLSRHGRLLRQRSQLLKRQLSNRDELLDAFDHQLAVIGTRLHRRRH 167 Query: 203 EMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 + L L + ++ + +L L L+G D+ ++ +L + R + Sbjct: 168 RALKRLEPLAAPWQERLSGGREQLQLLYQPGTQLNGDEDEHV--WQQCLLNQLQEQRPQE 225 Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318 + +GP R D+ + + GS G+Q+ +++ + LA L+++ +G P+LL Sbjct: 226 ARLGYCSVGPQRDDVALLLGGEPARRL-GSAGQQRCLVLALKLAELELVTSLSGVPPLLL 284 Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAKFMRI 367 LD++ A LD ++ L V + G Q ++ T +S + A+ + + Sbjct: 285 LDDVLAELDPQRQQLLLEAVGE-GHQCLVSATHLQSCVADWQQRAQLVEV 333 >gi|124023971|ref|YP_001018278.1| recombination protein F [Prochlorococcus marinus str. MIT 9303] gi|123964257|gb|ABM79013.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9303] Length = 352 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 73/305 (23%), Positives = 124/305 (40%), Gaps = 41/305 (13%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90 + +G NG+GK+N+LEA+ L R R +S D+ + +AD + Sbjct: 7 LVIGPNGIGKSNLLEAVELLGSLRSHRASSDQDLIHWEEQRAL--------LRAIADDTE 58 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHL--RISWLVPSMDRIFSGLSME--------R 140 KLE L++ R K L ++ + P FS L + R Sbjct: 59 KLE---------LELRRQGGRQARRNGKTLTRQLDLIGPLRCVGFSALDLNLVRGEPALR 109 Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----DSSWCSSIEAQMAELGV 195 R++LDR+V ++P + + F +L+R R++L + S + + QMA + Sbjct: 110 RQWLDRVVQQLEPIYSDLISRFNKLLRQRSQLWRQWRHIPIQERDSLLDAFDVQMALVST 169 Query: 196 KINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 +I+ R + L L + QKE + L+G+ + L E + Sbjct: 170 RIHRRRSRALARLEPLAARWQETLSKQKERL-RLDYQPGSQLEGEEAEEPWRLAIET--Q 226 Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 L D R + IGPHR ++ + D GS G+Q+ V++ + LA L+ Sbjct: 227 LLDQRSEEERLGSCRIGPHRDEVRLLLNDSEAR-RFGSAGQQRTVVLALKLAELELVGEL 285 Query: 311 TGFAP 315 G P Sbjct: 286 CGEPP 290 >gi|148927260|ref|ZP_01810831.1| DNA recombination/replication protein RecF [candidate division TM7 genomosp. GTL1] gi|147887346|gb|EDK72799.1| DNA recombination/replication protein RecF [candidate division TM7 genomosp. GTL1] Length = 107 Score = 42.7 bits (99), Expect = 0.081, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68 L + +FR+Y + TI G NG GKTN+LEA+ L+ G F RAS ++ +IG Sbjct: 5 LRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSF-RASDQELGQIG 62 >gi|313906345|ref|ZP_07839686.1| SMC domain protein [Eubacterium cellulosolvens 6] gi|313468809|gb|EFR64170.1| SMC domain protein [Eubacterium cellulosolvens 6] Length = 408 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 30/42 (71%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 +K + + FR Y +L + F+++ TI VGDNG GK+ +L+A+S Sbjct: 3 LKSIKLHNFRCYENLSVDFNSEFTILVGDNGAGKSALLDAVS 44 >gi|84385714|ref|ZP_00988745.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01] gi|84379694|gb|EAP96546.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01] Length = 842 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 IK+ + ++ FR Y + T+ VG+NG GKT+ILEAIS Sbjct: 420 IKVNQIKLTNFRGYTDFTIPIHESLTVLVGENGAGKTSILEAIS 463 >gi|333030699|ref|ZP_08458760.1| hypothetical protein Bcop_1586 [Bacteroides coprosuis DSM 18011] gi|332741296|gb|EGJ71778.1| hypothetical protein Bcop_1586 [Bacteroides coprosuis DSM 18011] Length = 522 Score = 42.7 bits (99), Expect = 0.088, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 9/79 (11%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KIK N F+N L L F+ IFVGDN GK+ IL+AI ++ R S V Sbjct: 6 KIKLHNFKRFKN---LTLDFNPDINIFVGDNESGKSTILQAIDLVA------RGSRTRVE 56 Query: 66 RIGSPSFFSTFARVEGMEG 84 IG F+ +E M+G Sbjct: 57 NIGLNKLFNIENMLEYMKG 75 >gi|254491212|ref|ZP_05104393.1| DNA replication and repair protein RecF [Methylophaga thiooxidans DMS010] gi|224463725|gb|EEF79993.1| DNA replication and repair protein RecF [Methylophaga thiooxydans DMS010] Length = 325 Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust. Identities = 61/304 (20%), Positives = 135/304 (44%), Gaps = 23/304 (7%) Query: 53 GRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 GR FR + + + + FAR + I L+ D +S +++N+ ++ Sbjct: 2 GRSFRSRALKHLVK-KQQQRLTVFAR-----SMDQTPIGLQY-DLQSGLLIRLNNAPLKR 54 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 + +L HL + ++ + + F RRR +D VF ++ +++ ++ RN Sbjct: 55 LSDLAAHLPLQFIPANCHQFFELGPKYRRRMVDWGVFHVEHSFNFHWQSYKKALQQRNAA 114 Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTG 230 + + Y + + + + + G+KI R L L+ E++ ++ P ++ T Sbjct: 115 IRK-YKPCNEIALWDTHLIKHGMKITEFRQ---GYLQQLVKEFLPLFRQLCPELE---TA 167 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGS 288 ++ Q + + ++A L + + D T G H +D L +D D + S Sbjct: 168 SFVLRYQQGWNK-ETDFADYLRENIERDRALGYTRSGAHAADWSLKIDDGDPYEML---S 223 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 G+QK+ + + +A +L++ +LL+D++S+ LD +N + + + Q F+ Sbjct: 224 RGQQKLFFLALSMAQIKLLAAQKEITNSVLLIDDLSSELDWHHQNTVIETLRTLPVQAFI 283 Query: 348 TGTD 351 + T+ Sbjct: 284 SSTN 287 >gi|332535595|ref|ZP_08411363.1| type I restriction-modification system, specificity subunit S [Pseudoalteromonas haloplanktis ANT/505] gi|332034979|gb|EGI71500.1| type I restriction-modification system, specificity subunit S [Pseudoalteromonas haloplanktis ANT/505] Length = 877 Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%) Query: 4 RIKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISF 49 ++KIK L + +R + S ++ F D+ T+ +G+NGVGK++ILEA + Sbjct: 428 QLKIKNLTLKNYRAFESFKMNFSDSNVTVIIGNNGVGKSSILEATAL 474 >gi|162451513|ref|YP_001613880.1| hypothetical protein sce3241 [Sorangium cellulosum 'So ce 56'] gi|161162095|emb|CAN93400.1| hypothetical protein sce3241 [Sorangium cellulosum 'So ce 56'] Length = 423 Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 30/46 (65%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +KI L++ +FR + SL L F T VG NG GKT+IL+A++ L Sbjct: 1 MKITRLSLRDFRGFRSLDLDFSPDVTALVGVNGAGKTSILDALALL 46 >gi|303244904|ref|ZP_07331230.1| SMC domain protein [Methanothermococcus okinawensis IH1] gi|302484721|gb|EFL47659.1| SMC domain protein [Methanothermococcus okinawensis IH1] Length = 997 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVT 65 IK +NI FR++ + ++ FD T +G NG GK++I EA+++ RG + D+ Sbjct: 3 IKAINIRNFRSHKNTQISFDKGITTIIGHNGSGKSSIFEAMNYALYARGSVSNVNIDDLI 62 Query: 66 RIGSPSFF 73 + G+ F Sbjct: 63 KRGTNQFL 70 >gi|213026882|ref|ZP_03341329.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 134 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 2/125 (1%) Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 6 DYADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGE 64 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ + + V D +E +K Sbjct: 65 FLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 124 Query: 365 MRISN 369 + Sbjct: 125 FTVEK 129 >gi|809744|emb|CAA32896.1| recF protein (1 is 2nd base in codon) [Pseudomonas putida] Length = 134 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 7/104 (6%) Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFL 301 L+E A L ++M T GP R+DL + + A I S G+QK+V+ + + Sbjct: 33 LQEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVVCALRI 86 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 A L+S I L+D++ + LD+ R AL R++ ++ Q Sbjct: 87 AQGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQC 130 >gi|302541733|ref|ZP_07294075.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC 53653] gi|302459351|gb|EFL22444.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC 53653] Length = 536 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I +R + L FD + I VGDN GK+ ILEAI G+ R Y D+ SP Sbjct: 7 IHNYRTFREFELDFDPEMNILVGDNDAGKSTILEAIELGLTGKLRGRPLYQDL----SPY 62 Query: 72 FFSTFARVEGMEGL 85 F A E + L Sbjct: 63 LFHQDAVSEWIADL 76 >gi|258645185|ref|ZP_05732654.1| conserved hypothetical protein [Dialister invisus DSM 15470] gi|260402534|gb|EEW96081.1| conserved hypothetical protein [Dialister invisus DSM 15470] Length = 543 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 I +R + + FD++ VGDN +GK+N L + ++ G GFR A + D Sbjct: 8 IENYRTFQDVTFHFDSRANYIVGDNNIGKSNFLSFLKTVTHGYGFREADFLD 59 >gi|21328235|gb|AAM48482.1| RecF [Listeria monocytogenes] Length = 106 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%) Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR D + Y + GS G+Q+ + I LA LI TG P+LLLD++ + LD+ Sbjct: 1 HRDDSLF-YINGQNVQDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDD 59 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +++ L + Q F+T T S D +ET K Sbjct: 60 YRQSHLLGAIEG-KVQTFVTTTSTSGID--HETLK 91 >gi|161528753|ref|YP_001582579.1| SMC domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160340054|gb|ABX13141.1| SMC domain protein [Nitrosopumilus maritimus SCM1] Length = 693 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 41/75 (54%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +F ++ +L FD T+FVG NG GK++I++AI+F G+ R+++ + R Sbjct: 2 ITSIELGDFLAHSDTKLEFDNGVTVFVGHNGAGKSSIIDAITFALFGQHTRKSNKGLIKR 61 Query: 67 IGSPSFFSTFARVEG 81 + + V G Sbjct: 62 GANQGYSKVNFSVNG 76 >gi|121594800|ref|YP_986696.1| hypothetical protein Ajs_2459 [Acidovorax sp. JS42] gi|120606880|gb|ABM42620.1| conserved hypothetical protein [Acidovorax sp. JS42] Length = 606 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGR 54 +K+ L IS FR S+ L+FD HT+ VG N VGK+ + EA+ L P R Sbjct: 1 MKVVRLTISNFRGIKSVELLFDG-HTLMVGSNNVGKSTLCEALDLVLGPDR 50 >gi|221633719|ref|YP_002522945.1| putative chromosome segregation protein [Thermomicrobium roseum DSM 5159] gi|221155554|gb|ACM04681.1| putative chromosome segregation protein [Thermomicrobium roseum DSM 5159] Length = 1187 Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 49/238 (20%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L + F+++A + LVFD T VG NG GK+N+ EAI+++ G R Sbjct: 3 VRLLRLALLGFKSFADPVELVFDRGITAIVGPNGSGKSNLAEAIAWVLGEQAGSAVRSRR 62 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLET-------------------RDDRSVR 101 DV G P S G+A++++ LE RD + Sbjct: 63 ADDVIFAGGPDRPSL--------GMAEVTLTLEQDGDELGVPFREVSVTRRVFRDGETQY 114 Query: 102 CLQINDVVIRVVDELNKHLRISWLVP---SMDRIFSGLSMERRRFLD------------- 145 + + +R V + LR W++ S+D + ERR +L+ Sbjct: 115 LINGSRARLRDVLRIAAILRADWIITRQGSVDDVLEQRPAERRHYLEHAAGLSALRLRQA 174 Query: 146 --RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 R A +H +R+ D R + L E + ++ A + E ++++ AR Sbjct: 175 EARQQLAEAEQHAQRLDDLLRELEPHVHALGEAAQRAREALAVRASLREALLQLSAAR 232 >gi|313828985|gb|EFS66699.1| recombination protein F domain protein [Propionibacterium acnes HL063PA2] Length = 226 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 19/175 (10%) Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-----LDGKF------D 237 ++A +G ++ AR++ ++A+ L +E P L+ + L+G + + Sbjct: 24 ELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTIDLEGLWSPPQERE 82 Query: 238 QSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 S ++E A + D R+ D + R TL+GP R D+I+ + + + S GE Sbjct: 83 SSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGEMPAKGYASHGESW 141 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + + + L +L+ + G P+L+LD++ A LD +R+ L V Q+ +T Sbjct: 142 SLALALRLGSFQLLRDD-GIEPVLVLDDVFAELDATRRDRLASSVVQ-ADQVLVT 194 >gi|294649512|ref|ZP_06726933.1| chromosome segregation ATPase [Acinetobacter haemolyticus ATCC 19194] gi|292824573|gb|EFF83355.1| chromosome segregation ATPase [Acinetobacter haemolyticus ATCC 19194] Length = 858 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|317499297|ref|ZP_07957570.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium 5_1_63FAA] gi|316893466|gb|EFV15675.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium 5_1_63FAA] Length = 113 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 IK L + +RNY L + F + + GDN GKTNILE+I + + R Sbjct: 3 IKSLELKNYRNYDELSMNFASGTNLLYGDNAQGKTNILESIYLSATTKSHR 53 >gi|303325741|ref|ZP_07356184.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio sp. 3_1_syn3] gi|302863657|gb|EFL86588.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio sp. 3_1_syn3] Length = 1178 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGFLDGKF 236 F +W +S+ AE G I +A V+ N L+ L+ E +++EN P +K +L G+LD K Sbjct: 859 FGPTWGNSLFEDAAEYGCGIGLAYVQRRNRLAMLVEEALKEENVPAELKSALQGWLDNKE 918 Query: 237 D 237 D Sbjct: 919 D 919 >gi|157060592|gb|ABV03302.1| RecF [Chlamydia trachomatis] Length = 96 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 24/40 (60%) Query: 34 GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73 G N GKTN+LEA+ LS GR FR + D R G+ FF Sbjct: 4 GLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF 43 >gi|117923322|ref|YP_863939.1| ATP binding protein [Magnetococcus sp. MC-1] gi|117607078|gb|ABK42533.1| ATP binding protein [Magnetococcus sp. MC-1] Length = 454 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSP 52 +K+ L +S FR + SL + FD T+ V NG GKT IL+AI L P Sbjct: 1 MKLNTLTLSNFRCFESLEITFDDYLTVLVAQNGGGKTAILDAIGVALGP 49 >gi|288573630|ref|ZP_06391987.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569371|gb|EFC90928.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 447 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 L ++ FR Y F + TI VG+NG GKT IL+AI+ + Sbjct: 5 LTLNNFRRYEKAHFCFHPKMTILVGENGKGKTTILDAIAVM 45 >gi|289810862|ref|ZP_06541491.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 68 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 27/55 (49%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 8 IKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIR 62 >gi|162455965|ref|YP_001618332.1| hypothetical protein sce7683 [Sorangium cellulosum 'So ce 56'] gi|161166547|emb|CAN97852.1| hypothetical protein sce7683 [Sorangium cellulosum 'So ce 56'] Length = 428 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRR 58 ++I + + FR +A+ L D T+ VG NG GKT+ L+AI L PGR R Sbjct: 1 MRISSIRLQNFRGFAACTLSLDRPLTVLVGVNGAGKTSTLDAIVRLLGVTNRVPGRAKRL 60 Query: 59 ASYADVTR 66 AD+ R Sbjct: 61 LVDADIRR 68 >gi|229817970|ref|ZP_04448252.1| hypothetical protein BIFANG_03257 [Bifidobacterium angulatum DSM 20098] gi|229784574|gb|EEP20688.1| hypothetical protein BIFANG_03257 [Bifidobacterium angulatum DSM 20098] Length = 247 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 95/238 (39%), Gaps = 42/238 (17%) Query: 2 TNRIKIKFLNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 T+ IK+ L R A L V Q +G NGVGKT + + I G R Sbjct: 4 TDIIKVNDLTFGYKRKQAVLEHITFAVPKGQSLAILGYNGVGKTTLFDLIV------GLR 57 Query: 58 R--ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLET-----------RDDRS----- 99 R + YA + + PS F E GL D E DD++ Sbjct: 58 RPWSGYAAINKAFVPSMRDVFQMTE-QGGLIDTMTVRENFKFRKMLFKPKDDDKTFFEAL 116 Query: 100 -----VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR-FLDRMVFAIDP 153 VR ++ND + + V +L+ LR I +G+ + LD AIDP Sbjct: 117 EKNPLVRAFELNDQLDKKVSDLSSGLR------KRVGIVAGMMFDPHVIMLDEPTNAIDP 170 Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 R +I++ +R NR + D +C ++ ++ L K +IA M++ L+S Sbjct: 171 LTRDLLIEYMGRLRADNRTILTITHDLHYCWNVSDRIIVLDHK-HIALDAMLSDLNSF 227 >gi|323701144|ref|ZP_08112819.1| ATPase-like protein, involved in DNA repair [Desulfotomaculum nigrificans DSM 574] gi|323533746|gb|EGB23610.1| ATPase-like protein, involved in DNA repair [Desulfotomaculum nigrificans DSM 574] Length = 416 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 24/117 (20%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----------- 53 +KIK L + FRN+ + L D Q FVG N GKT +L A+ + G Sbjct: 1 MKIKKLGVQNFRNHEATELELD-QVNFFVGHNNAGKTTLLAALEWALTGHCLWTDRAGRG 59 Query: 54 ------RGFRRASYA-DVTRIGS-----PSFFSTFARVEGMEGLADISIKLETRDDR 98 RG ++A+ + +V +GS P ++ G E A I L T ++R Sbjct: 60 SAELICRGQKQAAVSLEVEGLGSILRSMPPNSLRVGKLTGQEAQASILNSLRTDEER 116 >gi|332187543|ref|ZP_08389280.1| hypothetical protein SUS17_2659 [Sphingomonas sp. S17] gi|332012472|gb|EGI54540.1| hypothetical protein SUS17_2659 [Sphingomonas sp. S17] Length = 631 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRR 58 +KI ++I FR +S LV H + +GDN GK+++LEAI L P R RR Sbjct: 1 MKIYAVSIDNFRGISSTTLVL-PDHAVLIGDNNTGKSSVLEAIDLALGPDRLSRR 54 >gi|118581719|ref|YP_902969.1| chromosome segregation protein SMC [Pelobacter propionicus DSM 2379] gi|118504429|gb|ABL00912.1| condensin subunit Smc [Pelobacter propionicus DSM 2379] Length = 1176 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 14/100 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 +KIK L I F+++A R+V D Q T VG NG GK+NI+++I + + R Sbjct: 1 MKIKRLEICGFKSFAD-RVVLDFQQGVTGVVGPNGCGKSNIVDSIRWCMGEQSAKNLRGK 59 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99 + DV GS + G+A++S+ T D R+ Sbjct: 60 AMEDVIFAGSETRKPL--------GMAEVSLVFSTEDGRA 91 >gi|251793335|ref|YP_003008063.1| RecF/RecN/SMC N domain [Aggregatibacter aphrophilus NJ8700] gi|247534730|gb|ACS97976.1| RecF/RecN/SMC N domain, putative [Aggregatibacter aphrophilus NJ8700] Length = 409 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 19/145 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI +L IS F++ ++ + + + G NG GK+N ++A++FLS V Sbjct: 1 MKINYLKISGFKSIQNVEIKDVSSFMVLAGANGTGKSNFVDALAFLS-----------KV 49 Query: 65 TRIGSPSFFSTFARVEGMEGL----ADISIKLETRDDRSVRCLQI----NDVVIRVVDEL 116 +G S F VE + G +IS K+E + V +I N+++ R+ E Sbjct: 50 IDMGVSKAVSEFGGVENLIGPKHNSGNISYKIEFEIEEQVYQYEISIFLNNLISRISSES 109 Query: 117 NKHLRISWLVPSMDRIFSGLSMERR 141 K L+ ++ D++ L + + Sbjct: 110 LKILKDGQIIFDSDKVREKLEVNQE 134 >gi|296394|emb|CAA50569.1| RecF [Staphylococcus aureus] Length = 89 Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 +GS G+Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q Sbjct: 1 YGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQT 59 Query: 346 FMTGTDKSVFD-SLNETAKFMRIS 368 F+T T D + AK RI+ Sbjct: 60 FVTTTSVDGIDHEIMNNAKLYRIN 83 >gi|121583277|ref|YP_973713.1| hypothetical protein Pnap_4907 [Polaromonas naphthalenivorans CJ2] gi|120596535|gb|ABM39971.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2] Length = 769 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56 ++ I ++FL +FR ++L D + TI VG N GKT++L A+ FL+ G F Sbjct: 10 VSGDITLRFLEFCQFRRLGKVQLDIDKKTTILVGANNSGKTSVLAALRHFLADGSAF 66 >gi|226228632|ref|YP_002762738.1| putative iron ABC transporter ATP-binding protein [Gemmatimonas aurantiaca T-27] gi|226091823|dbj|BAH40268.1| putative iron ABC transporter ATP-binding protein [Gemmatimonas aurantiaca T-27] Length = 276 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 35/215 (16%) Query: 20 SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS---------- 69 +L L+ QH VG NG GK+ +L ++ L GRG R D+ R+ + Sbjct: 31 TLPLLHAGQHIALVGPNGAGKSTLLRVLAGLVEGRGSVRFDGFDLLRVSAMQRAQRVAFM 90 Query: 70 PSFFS---TFARVEGMEG---LADISIKLETRDDRSVRCLQINDVVIRVVDELN-KHLRI 122 P T + ++G+ G + +S +ET +D R I V++ + HL + Sbjct: 91 PQSLPQDVTLSVLDGLLGALKASPMSPPVETMEDAQQRG-------IAVLERIGIAHLAL 143 Query: 123 SWL--VPSMDRIFSGLSMERRR-----FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L + +R +GL+ R LD A+D RH+ ++ R + RL+ Sbjct: 144 QPLQHLSGGERQLAGLAQAIVREPAMLLLDEPTSALDLRHQVTVMSLARALAHEGRLVIS 203 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210 D + + Q+ + ++ RV+ + A ++ Sbjct: 204 VLHDLTLAARWADQL----IVLDGGRVQAMGAPTA 234 >gi|294676583|ref|YP_003577198.1| iron siderophore/cobalamin ABC transporter ATP-binding protein [Rhodobacter capsulatus SB 1003] gi|294475403|gb|ADE84791.1| iron siderophore/cobalamin ABC transporter, ATP-binding protein [Rhodobacter capsulatus SB 1003] Length = 248 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 18 YASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 A RL A + VG NG GKT +L+AI+ L+P R RR AD+ R Sbjct: 17 LAPCRLTLAAGEVLALVGPNGAGKTTLLQAIAGLAPERVRRRLGNADLAR 66 >gi|18313677|ref|NP_560344.1| purine NTPase [Pyrobaculum aerophilum str. IM2] gi|18161228|gb|AAL64526.1| purine NTPase, probable [Pyrobaculum aerophilum str. IM2] Length = 702 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 S GEQ ++ + I +A AR + G AP ++LDE + HLDE+ R + +V D+ S Sbjct: 626 SLGEQNLLALSIRVALARAL---LGGAPFMMLDEPTEHLDEEHRRRIVELVRDLTS 678 >gi|310794043|gb|EFQ29504.1| DNA polymerase family B [Glomerella graminicola M1.001] Length = 1722 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%) Query: 101 RCLQINDVVIRVVDELNKHLRISW-LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-R 158 RC+ D++ +L+ IS L+P ++RIF+ + + R++ D M P+ +R R Sbjct: 1540 RCVAPEDLLKDSHSQLDAEYYISKNLIPPLERIFNLVGVNVRQWYDEM-----PKVQRIR 1594 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 ID G N+ E Y +S+ C S +M GV + + ++ ++L L M Q+ Sbjct: 1595 RIDQTLGRGGLNKKTLESYLNSASCISCNVKMQVEGVMCSKCQHDVPSSLYHLQMRLHQE 1654 Query: 219 E 219 E Sbjct: 1655 E 1655 >gi|169634134|ref|YP_001707870.1| putative chromosome segregation ATPases [Acinetobacter baumannii SDF] gi|169152926|emb|CAP01967.1| putative chromosome segregation ATPases [Acinetobacter baumannii] Length = 1149 Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|325959801|ref|YP_004291267.1| SMC domain-containing protein [Methanobacterium sp. AL-21] gi|325331233|gb|ADZ10295.1| SMC domain protein [Methanobacterium sp. AL-21] Length = 900 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 29/43 (67%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 I+ L + F+++ ++ FD TI +G NG GK++ILEA+SF Sbjct: 3 IENLEMKNFKSHKDTKIDFDTGITIIMGGNGAGKSSILEAVSF 45 >gi|219666706|ref|YP_002457141.1| ATP-dependent endonuclease of the OLD family-like protein [Desulfitobacterium hafniense DCB-2] gi|219536966|gb|ACL18705.1| ATP-dependent endonuclease of the OLD family-like protein [Desulfitobacterium hafniense DCB-2] Length = 601 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + +S +RN + ++F +G+N +GK+N L I + G+GF +AD Sbjct: 1 MRIFCVKVSNYRNIDGITVIFHPDCNYIIGENNLGKSNFLSLIGTVCAGKGFDEKDFADP 60 Query: 65 TR 66 + Sbjct: 61 DK 62 >gi|150401140|ref|YP_001324906.1| SMC domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013843|gb|ABR56294.1| SMC domain protein [Methanococcus aeolicus Nankai-3] Length = 994 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF--LSPGRGFRRASYADV 64 IK +NI FR++++ + F T +G+NG GK++I EA+++ +P RR +D Sbjct: 3 IKNINIKNFRSHSNTDISFKQGITTIIGENGSGKSSIFEAMNYALFAP----RRIKLSDA 58 Query: 65 TRIGSPSFFS 74 + G+ FFS Sbjct: 59 IKRGT-DFFS 67 >gi|260555697|ref|ZP_05827917.1| chromosome segregation protein SMC [Acinetobacter baumannii ATCC 19606] gi|260410608|gb|EEX03906.1| chromosome segregation protein SMC [Acinetobacter baumannii ATCC 19606] Length = 1149 Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|193076576|gb|ABO11235.2| putative chromosome segregation ATPase [Acinetobacter baumannii ATCC 17978] Length = 1149 Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|169797011|ref|YP_001714804.1| putative chromosome segregation ATPases [Acinetobacter baumannii AYE] gi|213156585|ref|YP_002318246.1| chromosome segregation protein SMC [Acinetobacter baumannii AB0057] gi|215484471|ref|YP_002326706.1| chromosome segregation protein SMC [Acinetobacter baumannii AB307-0294] gi|301347732|ref|ZP_07228473.1| chromosome segregation protein SMC [Acinetobacter baumannii AB056] gi|301512480|ref|ZP_07237717.1| chromosome segregation protein SMC [Acinetobacter baumannii AB058] gi|301594388|ref|ZP_07239396.1| chromosome segregation protein SMC [Acinetobacter baumannii AB059] gi|332852099|ref|ZP_08433926.1| segregation protein SMC [Acinetobacter baumannii 6013150] gi|332867497|ref|ZP_08437650.1| segregation protein SMC [Acinetobacter baumannii 6013113] gi|169149938|emb|CAM87832.1| putative chromosome segregation ATPases [Acinetobacter baumannii AYE] gi|213055745|gb|ACJ40647.1| chromosome segregation protein SMC [Acinetobacter baumannii AB0057] gi|213988534|gb|ACJ58833.1| chromosome segregation protein SMC [Acinetobacter baumannii AB307-0294] gi|332729471|gb|EGJ60810.1| segregation protein SMC [Acinetobacter baumannii 6013150] gi|332733914|gb|EGJ65059.1| segregation protein SMC [Acinetobacter baumannii 6013113] Length = 1149 Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|322506975|gb|ADX02429.1| Putative chromosome segregation ATPase [Acinetobacter baumannii 1656-2] Length = 1149 Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|184157076|ref|YP_001845415.1| chromosome segregation ATPase [Acinetobacter baumannii ACICU] gi|332872652|ref|ZP_08440620.1| segregation protein SMC [Acinetobacter baumannii 6014059] gi|183208670|gb|ACC56068.1| Chromosome segregation ATPase [Acinetobacter baumannii ACICU] gi|323516842|gb|ADX91223.1| chromosome segregation ATPase [Acinetobacter baumannii TCDC-AB0715] gi|332739181|gb|EGJ70040.1| segregation protein SMC [Acinetobacter baumannii 6014059] Length = 1149 Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|239501243|ref|ZP_04660553.1| chromosome segregation ATPase [Acinetobacter baumannii AB900] Length = 1149 Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|299771369|ref|YP_003733395.1| chromosome segregation protein SMC [Acinetobacter sp. DR1] gi|298701457|gb|ADI92022.1| chromosome segregation protein SMC [Acinetobacter sp. DR1] Length = 1149 Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|209883314|ref|YP_002287171.1| ATP-dependent endonuclease family protein [Oligotropha carboxidovorans OM5] gi|209871510|gb|ACI91306.1| ATP-dependent endonuclease family protein [Oligotropha carboxidovorans OM5] Length = 615 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59 ++++ L I+ FR + + FD HT+ VG N +GK+ I EA+ L P R FRR Sbjct: 1 MRVRRLKITNFRGISQGSVDFDG-HTLLVGGNNIGKSTICEALDLVLGPERLFRRP 55 >gi|325121131|gb|ADY80654.1| putative chromosome segregation ATPase [Acinetobacter calcoaceticus PHEA-2] Length = 1149 Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|293609094|ref|ZP_06691397.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829667|gb|EFF88029.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 1149 Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|260550984|ref|ZP_05825189.1| chromosome segregation protein SMC [Acinetobacter sp. RUH2624] gi|260405932|gb|EEW99419.1| chromosome segregation protein SMC [Acinetobacter sp. RUH2624] Length = 1149 Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|301162347|emb|CBW21892.1| putative ATP-dependent endonuclease protein [Bacteroides fragilis 638R] Length = 572 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++IK +++ +RN S + FD VG+N +GK+NIL ++ + RGF + D Sbjct: 1 MRIKDISVENYRNLNSATITFDESCNFIVGENNLGKSNILNLLNIIFTRRGFVYDDFND 59 >gi|262280097|ref|ZP_06057882.1| chromosome segregation ATPase [Acinetobacter calcoaceticus RUH2202] gi|262260448|gb|EEY79181.1| chromosome segregation ATPase [Acinetobacter calcoaceticus RUH2202] Length = 1149 Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|322376075|ref|ZP_08050585.1| putative ATP/GTP-binding protein [Streptococcus sp. C300] gi|321279025|gb|EFX56068.1| putative ATP/GTP-binding protein [Streptococcus sp. C300] Length = 480 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 30/121 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--------------- 51 I+ I+ NY + L F TI++G+NGVGKT IL + +L Sbjct: 4 IEKFKINNLHNYYDVELNFKNDKTIYIGENGVGKTTILSMLYYLLNLNYERLSKYIFESL 63 Query: 52 ----PGRGFRRASYADVTRIGS---------PSFF--STFARVEGMEGLADISIKLETRD 96 G+ R + +D+T+I S P + ++E E L + +KLE Sbjct: 64 EIKFEGKKSVRITKSDITQINSVIRSRKGRYPKYIVDELINKIEQDENLMNELLKLENST 123 Query: 97 D 97 D Sbjct: 124 D 124 >gi|303235228|ref|ZP_07321846.1| conserved hypothetical protein [Finegoldia magna BVS033A4] gi|302493542|gb|EFL53330.1| conserved hypothetical protein [Finegoldia magna BVS033A4] Length = 518 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI+ +N F++Y + + + I VGDN VGK+++LEAI +S G RR + Sbjct: 7 KIRLINFKRFKDYT---ICPNGRLNILVGDNEVGKSSVLEAIELVSSG-NVRRVENIGLD 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKL 92 ++ + F + E L ++ I+L Sbjct: 63 KLMNVESILCFNKNRKYENLPEMIIEL 89 >gi|51244240|ref|YP_064124.1| hypothetical protein DP0388 [Desulfotalea psychrophila LSv54] gi|50875277|emb|CAG35117.1| hypothetical protein DP0388 [Desulfotalea psychrophila LSv54] Length = 450 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 18/82 (21%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L + +R + + + FD Q T+ V NG GK+ IL+A++ Sbjct: 15 MKIKRLTLHNYRRFTNFEIDFDEQLTVLVAKNGEGKSTILDAVA---------------- 58 Query: 65 TRIGSPSFFSTFARVEGMEGLA 86 T +G F + RV G+E A Sbjct: 59 TSLG--VFLTRLPRVTGLEPKA 78 >gi|227878888|ref|ZP_03996793.1| DNA repair protein RecN [Lactobacillus crispatus JV-V01] gi|256849776|ref|ZP_05555207.1| DNA repair protein [Lactobacillus crispatus MV-1A-US] gi|262046525|ref|ZP_06019486.1| DNA repair protein RecN [Lactobacillus crispatus MV-3A-US] gi|227861522|gb|EEJ69136.1| DNA repair protein RecN [Lactobacillus crispatus JV-V01] gi|256713265|gb|EEU28255.1| DNA repair protein [Lactobacillus crispatus MV-1A-US] gi|260572974|gb|EEX29533.1| DNA repair protein RecN [Lactobacillus crispatus MV-3A-US] Length = 560 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL++ F + T+ +G+ G GK+ I++A+S L GRG + ++ R G Sbjct: 5 LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQK-----EMIRSGE 59 Query: 70 P 70 P Sbjct: 60 P 60 >gi|154149264|ref|YP_001406217.1| hypothetical protein CHAB381_0630 [Campylobacter hominis ATCC BAA-381] gi|153805273|gb|ABS52280.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 513 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63 +KIK + + FR Y+ +V T+ VG N VGK+ ILEA+ F + G+G + D Sbjct: 1 MKIKSMKVKNFRGYSDEIIVNFDDLTVIVGKNDVGKSTILEALDIFFNDGKGVVKIDKTD 60 Query: 64 VT 65 V Sbjct: 61 VN 62 >gi|145591215|ref|YP_001153217.1| SMC domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145282983|gb|ABP50565.1| SMC domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 702 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%) Query: 284 IAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 I HG S GEQ ++ + + +A AR + G AP ++LDE + HLDE+ R + +V D+ Sbjct: 620 IDHGLLSLGEQNLLALSLRVALARAL---LGGAPFMMLDEPTEHLDEEHRKRIVELVRDL 676 >gi|49481871|gb|AAT66647.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 A +EG+ L D DDR C + D+ + V D Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90 >gi|302531359|ref|ZP_07283701.1| recombination protein F [Streptomyces sp. AA4] gi|302440254|gb|EFL12070.1| recombination protein F [Streptomyces sp. AA4] Length = 204 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 3/108 (2%) Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L+E K L D R+ + +L+GPHR +L + +A + S GE + + L Sbjct: 76 LRELLLKALADTRRQELERGISLVGPHRDELEL-ILGEAPAKGYASHGESWSFALALRLG 134 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 L+ G P+LLLD++ A LD +R L + Q+ +T Sbjct: 135 SYELLRAEAG-EPVLLLDDVFAELDRKRRARLAEVAAG-AEQVLITAA 180 >gi|49481865|gb|AAT66644.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 A +EG+ L D DDR C + D+ + V D Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90 >gi|49481861|gb|AAT66642.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 A +EG+ L D DDR C + D+ + V D Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90 >gi|49481873|gb|AAT66648.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 A +EG+ L D DDR C + D+ + V D Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90 >gi|47076774|dbj|BAD18317.1| DNA repair protein [Geobacillus stearothermophilus] gi|49481869|gb|AAT66646.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 A +EG+ L D DDR C + D+ + V D Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90 >gi|262373319|ref|ZP_06066598.1| chromosome segregation protein SMC [Acinetobacter junii SH205] gi|262313344|gb|EEY94429.1| chromosome segregation protein SMC [Acinetobacter junii SH205] Length = 1149 Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|226953498|ref|ZP_03823962.1| chromosome segregation ATPase [Acinetobacter sp. ATCC 27244] gi|226835783|gb|EEH68166.1| chromosome segregation ATPase [Acinetobacter sp. ATCC 27244] Length = 1152 Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|227497499|ref|ZP_03927728.1| SMC structural maintenance of chromosomes partitioning protein [Actinomyces urogenitalis DSM 15434] gi|226833073|gb|EEH65456.1| SMC structural maintenance of chromosomes partitioning protein [Actinomyces urogenitalis DSM 15434] Length = 431 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 42/192 (21%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L I F+++AS L + T VG NG GK+N+++A++++ +G R S Sbjct: 1 MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGVKNLRGGS 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD---------RSVRCL-------- 103 ADV G+ S + G A++S+ ++ D R L Sbjct: 61 MADVIFAGAGSRPAL--------GRAEVSLTIDNSDGVLPIDYTEVTVTRTLFRGGGSEY 112 Query: 104 QINDVVIRVVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 QIN R++D L + + + +D + ERR F++ + +H Sbjct: 113 QINGTPCRLLDVQELLSDTGLGRQMHVIVGQGRLDAVLQATPEERRGFIEEAAGVL--KH 170 Query: 156 RRRMIDFERLMR 167 RRR ER +R Sbjct: 171 RRRK---ERALR 179 >gi|49481867|gb|AAT66645.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 A +EG+ L D DDR C + D+ + V D Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90 >gi|242398089|ref|YP_002993513.1| DNA double-strand break repair rad50 ATPase [Thermococcus sibiricus MM 739] gi|242264482|gb|ACS89164.1| DNA double-strand break repair rad50 ATPase [Thermococcus sibiricus MM 739] Length = 895 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 10/75 (13%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI---SFLSPG---RGFR 57 +++I+ L I FR + + + F+ + +G NG GK++ILEA+ +L G RG++ Sbjct: 8 KMRIRSLKIKNFRAHENSHVEFNDGINLIIGQNGSGKSSILEAVFASLYLGHGSFPRGYK 67 Query: 58 RASYADVTRIGSPSF 72 + + TRIG F Sbjct: 68 KVN----TRIGKSGF 78 >gi|295397721|ref|ZP_06807793.1| DNA repair protein RecN [Aerococcus viridans ATCC 11563] gi|294974050|gb|EFG49805.1| DNA repair protein RecN [Aerococcus viridans ATCC 11563] Length = 564 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 11/106 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I F L + FD+ T+ G+ G GK+ I++A+ L GRG D R Sbjct: 2 LQHLTIKNFAIIEDLTIDFDSGMTVLTGETGAGKSIIIDAVGLLVGGRG-----STDFIR 56 Query: 67 IGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 GS F+ EG LAD I + VR L IN Sbjct: 57 YGSEKFDLRGIFYMPDLSEEGRNMLADNDIPFDDAQLMIVRQLDIN 102 >gi|331007822|ref|ZP_08330925.1| hypothetical protein IMCC1989_2132 [gamma proteobacterium IMCC1989] gi|330418364|gb|EGG92927.1| hypothetical protein IMCC1989_2132 [gamma proteobacterium IMCC1989] Length = 634 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 2/45 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAI 47 +++K + ISE++N L FD IFVG NG GK+N+LEA+ Sbjct: 1 MRLKSVYISEYKNLKKFSLSFDGASFINIFVGKNGSGKSNLLEAL 45 >gi|320093874|ref|ZP_08025715.1| hypothetical protein HMPREF9005_0327 [Actinomyces sp. oral taxon 178 str. F0338] gi|319979191|gb|EFW10693.1| hypothetical protein HMPREF9005_0327 [Actinomyces sp. oral taxon 178 str. F0338] Length = 448 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 23/173 (13%) Query: 7 IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K L + F+++AS L + T VG NG GK+N+++A++++ R R + A Sbjct: 3 LKSLTLRGFKSFASATTLRLEPGITCVVGPNGSGKSNVVDALAWVMGEQGARAMRGGNMA 62 Query: 63 DVTRIGS---PSFFSTFA--RVEGMEGLADISIKLETRDDRSVRC----LQINDVVIRVV 113 DV G+ P+ A ++ +GL DI T R QIN R++ Sbjct: 63 DVIFAGAGSRPALGRAQADLTIDNSDGLLDIEYSEVTISRTLFRGGGSEYQINGAPARLL 122 Query: 114 D--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158 D + + + + +D I S ERR F++ + +HRRR Sbjct: 123 DVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVL--KHRRR 173 >gi|260886534|ref|ZP_05897797.1| hypothetical ATP-binding protein [Selenomonas sputigena ATCC 35185] gi|330839624|ref|YP_004414204.1| SMC domain protein [Selenomonas sputigena ATCC 35185] gi|260863677|gb|EEX78177.1| hypothetical ATP-binding protein [Selenomonas sputigena ATCC 35185] gi|329747388|gb|AEC00745.1| SMC domain protein [Selenomonas sputigena ATCC 35185] Length = 429 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 6/60 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-----SFLSPGRGFRRASY 61 IK L + FR + L + F +T+ +G NG GK++IL+A+ SFL+ G G + A++ Sbjct: 3 IKRLQLENFRCFEQLTIDFPKDYTVLIGGNGAGKSSILDAVAIAMASFLA-GCGIQAANF 61 >gi|2369708|emb|CAA70738.1| RecN protein [Geobacillus stearothermophilus] Length = 143 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 19/105 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 A +EG+ DDR C + D+ + V D Sbjct: 60 EK-----AEIEGL---------FLLDDDRHPCCQKCADIGVDVSD 90 >gi|255656881|ref|ZP_05402290.1| V-type ATP synthase subunit C [Clostridium difficile QCD-23m63] gi|296452282|ref|ZP_06893987.1| V-type ATP synthase subunit C [Clostridium difficile NAP08] gi|296877633|ref|ZP_06901663.1| V-type ATP synthase subunit C [Clostridium difficile NAP07] gi|296258885|gb|EFH05775.1| V-type ATP synthase subunit C [Clostridium difficile NAP08] gi|296431394|gb|EFH17211.1| V-type ATP synthase subunit C [Clostridium difficile NAP07] Length = 325 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 34/69 (49%) Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70 N+ F +++ FD +FV + K LEA S +P F+ SY+DV + G Sbjct: 196 NLKSFIRVKNMKKDFDMFMNVFVSGGSLDKEKFLEAFSSDTPASCFKSTSYSDVCKNGMD 255 Query: 71 SFFSTFARV 79 S F+ F ++ Sbjct: 256 SGFTVFEKL 264 >gi|126700577|ref|YP_001089474.1| V-type ATP synthase subunit C [Clostridium difficile 630] gi|254976503|ref|ZP_05272975.1| V-type ATP synthase subunit C [Clostridium difficile QCD-66c26] gi|255093887|ref|ZP_05323365.1| V-type ATP synthase subunit C [Clostridium difficile CIP 107932] gi|255307937|ref|ZP_05352108.1| V-type ATP synthase subunit C [Clostridium difficile ATCC 43255] gi|255315640|ref|ZP_05357223.1| V-type ATP synthase subunit C [Clostridium difficile QCD-76w55] gi|255518300|ref|ZP_05385976.1| V-type ATP synthase subunit C [Clostridium difficile QCD-97b34] gi|255651418|ref|ZP_05398320.1| V-type ATP synthase subunit C [Clostridium difficile QCD-37x79] gi|260684477|ref|YP_003215762.1| V-type ATP synthase subunit C [Clostridium difficile CD196] gi|260688136|ref|YP_003219270.1| V-type ATP synthase subunit C [Clostridium difficile R20291] gi|306521247|ref|ZP_07407594.1| V-type ATP synthase subunit C [Clostridium difficile QCD-32g58] gi|115252014|emb|CAJ69850.1| V-type ATP synthase subunit C [Clostridium difficile] gi|260210640|emb|CBA65325.1| V-type sodium ATP synthase subunit C [Clostridium difficile CD196] gi|260214153|emb|CBE06372.1| V-type sodium ATP synthase subunit C [Clostridium difficile R20291] Length = 325 Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 34/69 (49%) Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70 N+ F +++ FD +FV + K LEA S +P F+ SY+DV + G Sbjct: 196 NLKSFIRVKNMKKDFDMFMNVFVSGGSLDKEKFLEAFSSDTPASCFKSTSYSDVCKNGMD 255 Query: 71 SFFSTFARV 79 S F+ F ++ Sbjct: 256 SGFTVFEKL 264 >gi|269860026|ref|XP_002649736.1| DNA repair protein RAD50 [Enterocytozoon bieneusi H348] gi|220066795|gb|EED44266.1| DNA repair protein RAD50 [Enterocytozoon bieneusi H348] Length = 1180 Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 M I + I F + S R+ FD T+ VG NG GKT I+E + +L+ G Sbjct: 1 MIRLISLDIKGIRSFDPHKSNRIEFDVPLTLIVGQNGTGKTTIIECLKYLTTG 53 >gi|323456696|gb|EGB12562.1| hypothetical protein AURANDRAFT_70503 [Aureococcus anophagefferens] Length = 1114 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 31/50 (62%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 M +R +I+ L I F+++ ++ T VG NG GK+N+++A+SF+ Sbjct: 1 MASRGRIRSLEIENFKSFGGKNVIAFRGFTSVVGPNGAGKSNLMDAVSFV 50 >gi|310639249|ref|YP_003944008.1| SMC domain-containing protein [Ketogulonicigenium vulgare Y25] gi|308752825|gb|ADO43969.1| SMC domain-containing protein [Ketogulonicigenium vulgare Y25] Length = 423 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 28/43 (65%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +KI+ L+++ R + FD T+ VG NGVGK+++LEA+ Sbjct: 1 MKIRRLSVAGLRGFDQATFEFDPHFTLLVGVNGVGKSSVLEAL 43 >gi|294651981|ref|ZP_06729265.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292822137|gb|EFF81056.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 515 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 + I ++ LR+ F+ + T+ +GDNGVGKT IL+AI Sbjct: 61 IEICNYKKIRKLRINFEKELTVIIGDNGVGKTTILDAI 98 >gi|126458979|ref|YP_001055257.1| SMC domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126248700|gb|ABO07791.1| SMC domain protein [Pyrobaculum calidifontis JCM 11548] Length = 700 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 S GEQ ++ + + +A AR + G AP ++LDE + HLDE+ R + +V D+ S + Sbjct: 624 SLGEQNLLALSLRVALARAL---IGTAPFMMLDEPTEHLDEEHRRRIVELVRDLTSVV 678 >gi|20094127|ref|NP_613974.1| SMC1-family ATPase [Methanopyrus kandleri AV19] gi|49036452|sp|Q8TXI4|RAD50_METKA RecName: Full=DNA double-strand break repair rad50 ATPase gi|19887131|gb|AAM01904.1| SMC1-family ATPase involved in DNA repair [Methanopyrus kandleri AV19] Length = 876 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M R+KI+ L R+++S + F + VG NG GKT +LEAI+ R FR S Sbjct: 1 MIERVKIENL-----RSHSSTEIEFREGINVLVGPNGAGKTTVLEAITLALFPRTFR--S 53 Query: 61 YADVTRIGS 69 Y + R G Sbjct: 54 YDHMIREGE 62 >gi|323496668|ref|ZP_08101719.1| RecF/RecN/SMC family protein [Vibrio sinaloensis DSM 21326] gi|323318250|gb|EGA71210.1| RecF/RecN/SMC family protein [Vibrio sinaloensis DSM 21326] Length = 542 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 31/45 (68%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 ++++ L++S FR + L L FD + T+ +GDNG GKT+ +A++ Sbjct: 62 KLRLNSLSLSNFRRFDDLCLDFDEKLTVIIGDNGAGKTSFADAMA 106 >gi|256958230|ref|ZP_05562401.1| predicted protein [Enterococcus faecalis DS5] gi|256948726|gb|EEU65358.1| predicted protein [Enterococcus faecalis DS5] gi|315036041|gb|EFT47973.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX0027] Length = 196 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 14/162 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 I+IK LNI S+ ++ ++ +F GDNG GKT +L+ IS + + + Sbjct: 8 IEIKDLNIPYVDKKISMNIL--KEYNLFTGDNGNGKTLLLDYISGVKKAKRTVIKGNESI 65 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDELNKHLRIS 123 I +FS R+ GM+ L S L+ + +S++ Q++D +++ D ++K L+ Sbjct: 66 IYINQNIYFSD--RLSGMDFLK-FSYGLDGK--KSIQSFYQLSDKILKRED-IDKLLKKQ 119 Query: 124 W-LVPSMDRIFSG----LSMERRRFLDRMVFAIDPRHRRRMI 160 W ++ ++ F +S+ER ++ FA + R++M+ Sbjct: 120 WGMLSGGEKKFLYALILMSLEREWYILDEPFAFVDKKRKKML 161 >gi|293192415|ref|ZP_06609526.1| putative RecF/RecN/SMC N domain protein [Actinomyces odontolyticus F0309] gi|292820330|gb|EFF79324.1| putative RecF/RecN/SMC N domain protein [Actinomyces odontolyticus F0309] Length = 476 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 27/175 (15%) Query: 7 IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K L + F+++AS LV T VG NG GK+N+++A++++ R R A Sbjct: 3 LKNLTLRGFKSFASATTLVLQPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQMA 62 Query: 63 DVTRIGSPSFFSTFAR------VEGMEGLADISIKLETRDDRSV-----RCLQINDVVIR 111 DV G+ S + R ++ +GL DI E R++ IN R Sbjct: 63 DVIFAGT-SGRAALGRAQVDLTIDNTDGLLDIEYS-EVTISRTLFRGGGSEYSINGTPAR 120 Query: 112 VVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158 ++D + + + + +D I S ERR F++ + +HRRR Sbjct: 121 LLDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVL--KHRRR 173 >gi|307267912|ref|ZP_07549302.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX4248] gi|312901751|ref|ZP_07761020.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX0470] gi|306515787|gb|EFM84310.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX4248] gi|311291220|gb|EFQ69776.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX0470] gi|315148232|gb|EFT92248.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX4244] gi|315169262|gb|EFU13279.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX1341] gi|315576343|gb|EFU88534.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX0309B] gi|315582835|gb|EFU95026.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX0309A] Length = 196 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 14/162 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 I+IK LNI S+ ++ ++ +F GDNG GKT +L+ IS + + + Sbjct: 8 IEIKDLNIPYVDKKISMNIL--KEYNLFTGDNGNGKTLLLDYISGVKKAKRTVIKGNESI 65 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDELNKHLRIS 123 I +FS R+ GM+ L S L+ + +S++ Q++D +++ D ++K L+ Sbjct: 66 IYINQNIYFSD--RLSGMDFLK-FSYGLDGK--KSIQSFYQLSDKILKRED-IDKLLKKQ 119 Query: 124 W-LVPSMDRIFSG----LSMERRRFLDRMVFAIDPRHRRRMI 160 W ++ ++ F +S+ER ++ FA + R++M+ Sbjct: 120 WGMLSGGEKKFLYALILMSLEREWYILDEPFAFVDKKRKKML 161 >gi|78222390|ref|YP_384137.1| condensin subunit Smc [Geobacter metallireducens GS-15] gi|78193645|gb|ABB31412.1| condensin subunit Smc [Geobacter metallireducens GS-15] Length = 1176 Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 12/98 (12%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +KIK L+IS F+++ + L F T VG NG GK+N+++AI ++ + R S Sbjct: 1 MKIKRLDISGFKSFVDKVSLDFQQGITSIVGPNGCGKSNVVDAIRWVMGEQSAKNLRGKS 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98 D+ GS S G+A++S+ T D R Sbjct: 61 MEDIIFGGSES--------RKPLGMAEVSMAFSTEDGR 90 >gi|170289653|ref|YP_001736469.1| DNA repair ATPase SbcC [Candidatus Korarchaeum cryptofilum OPF8] gi|170173733|gb|ACB06786.1| ATPase involved in DNA repair, SbcC [Candidatus Korarchaeum cryptofilum OPF8] Length = 902 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK +++ F ++ + F +G+NG GKT ILEAI++ R R+ ++ Sbjct: 1 MRIKRISLENFGSHQKTDITFADGINAIIGNNGAGKTTILEAIAYALYHRASRQQD--EL 58 Query: 65 TRIGSP 70 RIG+P Sbjct: 59 IRIGAP 64 >gi|153868967|ref|ZP_01998681.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152074461|gb|EDN71313.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 159 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 IK++ + + FR + L L F + T+ +G+NG GKT IL+ ++ L Sbjct: 13 IKVRKIILENFRGFEQLELEFQSDLTVLIGENGAGKTTILDGLAKL 58 >gi|213421125|ref|ZP_03354191.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 216 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 15/230 (6%) Query: 43 ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102 +LEAI L GR FR V R +F R++G E I + + + D VR Sbjct: 1 MLEAIYTLGHGRAFRSLQPGRVIRHEQEAFV-LHGRLQGEERETSIGLTKDKQGDSKVR- 58 Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 I+ + EL + + + P + +G RR FLD F + + Sbjct: 59 --IDGTDGHKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNL 116 Query: 163 ERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 +RL++ RN L + ++ + ++ L +I+ R E +A++ + + Q + Sbjct: 117 KRLLKQRNAALRQVSRYEQ--LRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFL 173 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 P L+ + F G ++ +YA L + D M T GPH++ Sbjct: 174 PEFSLTFS-FQRGWEKET------DYADVLERSFERDRMLTYTAHGPHKA 216 >gi|49481921|gb|AAT66672.1| DNA repair and genetic recombination protein [Geobacillus subterraneus] Length = 573 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGX-----AEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|163800493|ref|ZP_02194394.1| hypothetical protein 1103602000595_AND4_07419 [Vibrio sp. AND4] gi|159175936|gb|EDP60730.1| hypothetical protein AND4_07419 [Vibrio sp. AND4] Length = 553 Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M N + I+ L I F+ S F+ + I VGDN GKT ILEA+ +S +R S Sbjct: 1 MGNLMYIEKLTIKNFKKIESGEYEFNEKVNILVGDNDSGKTTILEALELVS-SSNYRGKS 59 Query: 61 YADVTRIGSPSFFSTFARVEGMEG 84 + SP F+ A +EG Sbjct: 60 ---INSSLSPQLFNNKAVRTYLEG 80 >gi|217967336|ref|YP_002352842.1| SMC domain protein [Dictyoglomus turgidum DSM 6724] gi|217336435|gb|ACK42228.1| SMC domain protein [Dictyoglomus turgidum DSM 6724] Length = 1082 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASY 61 I +K L ++ F+++ + ++ F + T+ G NG GK+NIL+AI ++ + + RA Sbjct: 2 IYLKSLELTNFKSFIGNNKIPFSQKFTVITGPNGSGKSNILDAIRWVLGEQRIKALRAEK 61 Query: 62 ADVTRIGSPSFFS--TFARVE 80 D G F+S +A+VE Sbjct: 62 TDEIIFGGNRFYSKANYAKVE 82 >gi|49481961|gb|AAT66692.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A86] Length = 573 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 19/103 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 A +EG+ L D DDR C + +V I V Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88 >gi|138895960|ref|YP_001126413.1| DNA repair and genetic recombination [Geobacillus thermodenitrificans NG80-2] gi|196248851|ref|ZP_03147551.1| DNA repair protein RecN [Geobacillus sp. G11MC16] gi|49481927|gb|AAT66675.1| DNA repair and genetic recombination protein [Geobacillus thermodenitrificans] gi|49481929|gb|AAT66676.1| DNA repair and genetic recombination protein [Geobacillus thermodenitrificans] gi|49481931|gb|AAT66677.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A21] gi|49481933|gb|AAT66678.1| DNA repair and genetic recombination protein [Geobacillus thermodenitrificans] gi|49481935|gb|AAT66679.1| DNA repair and genetic recombination protein [Geobacillus thermodenitrificans] gi|49481937|gb|AAT66680.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A45] gi|49481939|gb|AAT66681.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A5] gi|49481941|gb|AAT66682.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A54] gi|49481945|gb|AAT66684.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A66] gi|49481947|gb|AAT66685.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A67] gi|49481949|gb|AAT66686.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A69] gi|49481953|gb|AAT66688.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A73] gi|49481965|gb|AAT66694.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A91] gi|82395828|gb|ABB72478.1| DNA repair protein [Geobacillus thermodenitrificans NG80-2] gi|134267473|gb|ABO67668.1| DNA repair and genetic recombination [Geobacillus thermodenitrificans NG80-2] gi|196211727|gb|EDY06486.1| DNA repair protein RecN [Geobacillus sp. G11MC16] Length = 573 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 19/103 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 A +EG+ L D DDR C + +V I V Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88 >gi|332968938|gb|EGK07984.1| ATPase [Desmospora sp. 8437] Length = 515 Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 11/91 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++++ I R +A R+ F VG+NGVGK+ IL++ + + Y D ++ Sbjct: 54 LEWIKIRGVRGWAGERIDFKFPIVAIVGENGVGKSTILQSAASI----------YKDSSK 103 Query: 67 IGSPSFF-STFARVEGMEGLADISIKLETRD 96 + ++ STF E L DI IK R+ Sbjct: 104 TKNEQYYPSTFFPDTAWEELTDIEIKASIRE 134 >gi|313500657|gb|ADR62023.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 631 Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAI 47 +++K L+IS ++N + L FD + + FVG NG GK+N+ EA+ Sbjct: 1 MRLKLLSISHYKNLKNFNLEFDGESFVDLFVGKNGSGKSNLFEAL 45 >gi|121595344|ref|YP_987240.1| SMC domain-containing protein [Acidovorax sp. JS42] gi|120607424|gb|ABM43164.1| SMC domain protein [Acidovorax sp. JS42] Length = 406 Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 29/44 (65%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 ++++ L + FR Y L + A+ T+ +G+NG GKT +L+AI+ Sbjct: 1 MRLQRLTLENFRGYTCLEIGLGARLTLLLGENGAGKTTLLDAIA 44 >gi|49481951|gb|AAT66687.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A71] Length = 573 Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 19/103 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 A +EG+ L D DDR C + +V I V Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88 >gi|108799563|ref|YP_639760.1| hypothetical protein Mmcs_2596 [Mycobacterium sp. MCS] gi|119868673|ref|YP_938625.1| hypothetical protein Mkms_2640 [Mycobacterium sp. KMS] gi|108769982|gb|ABG08704.1| hypothetical protein Mmcs_2596 [Mycobacterium sp. MCS] gi|119694762|gb|ABL91835.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length = 887 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 15/92 (16%) Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 D F++ AL+ + F GR+ + R+ L G H+ ++ S GEQ Sbjct: 616 DALFNEECIALRAPALRVEFVGRQGRAQRRKVLNGKHKPSTVL------------SEGEQ 663 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 KV+ + FLA ARL T AP++ D +S+ Sbjct: 664 KVLAMADFLAEARLAGIT---APVIFDDPVSS 692 >gi|315611794|ref|ZP_07886716.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] gi|315316209|gb|EFU64239.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] Length = 880 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +KIK + I F+N R++ F T+FVG NG GKT I +AI G+ RR +D Sbjct: 1 MKIKKILIKNFKNIKGTRIIDFQENVTLFVGPNGFGKTTIFDAIELSLTGK-IRRIEESD 59 Query: 64 VTRIGSPSFFSTF 76 + G SF + + Sbjct: 60 YSD-GRSSFSTPY 71 >gi|49481943|gb|AAT66683.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A65] gi|49481955|gb|AAT66689.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A74] Length = 573 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 19/103 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 A +EG+ L D DDR C + +V I V Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88 >gi|300869534|ref|ZP_07114116.1| ATP binding protein [Oscillatoria sp. PCC 6506] gi|300332507|emb|CBN59314.1| ATP binding protein [Oscillatoria sp. PCC 6506] Length = 420 Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K+K L I+ FR +L L F+ I +G+NGVGK++IL+ I+ L R + + Sbjct: 1 MKVKRLKINAFRGIDNLNLEFNPDEPIVIIGNNGVGKSSILDCIAILL-SRFLYLIQFPN 59 Query: 64 VTRIGSPSFF 73 +PSFF Sbjct: 60 KNDSLNPSFF 69 >gi|256422037|ref|YP_003122690.1| hypothetical protein Cpin_3013 [Chitinophaga pinensis DSM 2588] gi|256036945|gb|ACU60489.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588] Length = 520 Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 3/95 (3%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KIK LN F+ + SL + F + +GDN GK++IL AI + G + S Sbjct: 6 KIKLLN---FKRFPSLEIEFQDDLNLLIGDNEAGKSSILSAIDLVLSGSHSKVESLGIDV 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100 + S + S FA + L + I+L D ++ Sbjct: 63 LLNSQAVESFFAGAKQYNRLPKLEIELYLNDQQNA 97 >gi|153872219|ref|ZP_02001174.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152071318|gb|EDN68829.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 371 Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 28/45 (62%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 I+F+ I+ +R+ SL L ++F G NG GKTN EA+ F++ Sbjct: 5 IRFIKIANYRSIDSLELHNIKPFSVFAGPNGAGKTNFFEALDFVN 49 >gi|256843402|ref|ZP_05548890.1| DNA repair protein RecN [Lactobacillus crispatus 125-2-CHN] gi|293380306|ref|ZP_06626380.1| DNA repair protein RecN [Lactobacillus crispatus 214-1] gi|256614822|gb|EEU20023.1| DNA repair protein RecN [Lactobacillus crispatus 125-2-CHN] gi|290923121|gb|EFE00050.1| DNA repair protein RecN [Lactobacillus crispatus 214-1] Length = 560 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 L+I F SL++ F + T+ +G+ G GK+ I++A+S L GRG + Sbjct: 5 LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQKE 53 >gi|297529444|ref|YP_003670719.1| DNA repair protein RecN [Geobacillus sp. C56-T3] gi|297252696|gb|ADI26142.1| DNA repair protein RecN [Geobacillus sp. C56-T3] Length = 573 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|49481879|gb|AAT66651.1| DNA repair and genetic recombination protein [Geobacillus thermoleovorans] Length = 573 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFXIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|206900328|ref|YP_002250664.1| chromosome segregation SMC protein, putative [Dictyoglomus thermophilum H-6-12] gi|206739431|gb|ACI18489.1| chromosome segregation SMC protein, putative [Dictyoglomus thermophilum H-6-12] Length = 1084 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASY 61 I +K L ++ F+++ + ++ F T+ G NG GK+NIL+AI ++ + + RA Sbjct: 2 IYLKSLELTNFKSFIGNNKIPFSQNFTVITGPNGSGKSNILDAIRWVLGEQRVKTLRAEK 61 Query: 62 ADVTRIGSPSFFS--TFARVE 80 D G F+S +A+VE Sbjct: 62 TDEVIFGGNKFYSQANYAKVE 82 >gi|49481923|gb|AAT66673.1| DNA repair and genetic recombination protein [Geobacillus subterraneus] Length = 573 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|149924994|ref|ZP_01913318.1| Chromosome segregation protein SMC [Plesiocystis pacifica SIR-1] gi|149814141|gb|EDM73760.1| Chromosome segregation protein SMC [Plesiocystis pacifica SIR-1] Length = 651 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 12/97 (12%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++IK + + F+++A +V D T +G NG GK+NI++AI + + R Sbjct: 1 MRIKKIEVIGFKSFADREVVVLDDHVTAVIGPNGCGKSNIVDAIRWCLGEQRAKHLRGGG 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97 ADV GS + G G+A+++I E+ D Sbjct: 61 MADVIFAGSST--------RGPAGMAEVTITFESEGD 89 >gi|261417752|ref|YP_003251434.1| DNA repair protein RecN [Geobacillus sp. Y412MC61] gi|319767436|ref|YP_004132937.1| DNA repair protein RecN [Geobacillus sp. Y412MC52] gi|261374209|gb|ACX76952.1| DNA repair protein RecN [Geobacillus sp. Y412MC61] gi|317112302|gb|ADU94794.1| DNA repair protein RecN [Geobacillus sp. Y412MC52] Length = 573 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|15678568|ref|NP_275683.1| intracellular protein transport protein [Methanothermobacter thermautotrophicus str. Delta H] gi|18201989|sp|O26640|RAD50_METTH RecName: Full=DNA double-strand break repair rad50 ATPase gi|2621615|gb|AAB85046.1| intracellular protein transport protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 837 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59 I+ L + R+Y S R+ FD T+F GD G GKT +L A+ F G G +R Sbjct: 3 IRSLELKNIRSYESGRVEFDDGVTLFEGDIGSGKTTLLLAVEFALFGLGDQRG 55 >gi|49481901|gb|AAT66662.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A93] Length = 573 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|49481957|gb|AAT66690.1| DNA repair and genetic recombination protein [Geobacillus kaue] Length = 573 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|49481919|gb|AAT66671.1| DNA repair and genetic recombination protein [Geobacillus subterraneus] Length = 573 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|325957121|ref|YP_004292533.1| DNA repair protein recn [Lactobacillus acidophilus 30SC] gi|325333686|gb|ADZ07594.1| DNA repair protein recn [Lactobacillus acidophilus 30SC] Length = 560 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 L+I F SL++ F + T+ +G+ G GK+ I++A+S L GRG + Sbjct: 5 LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQKE 53 >gi|307269738|ref|ZP_07551068.1| hypothetical protein HMPREF9498_01865 [Enterococcus faecalis TX4248] gi|306513848|gb|EFM82450.1| hypothetical protein HMPREF9498_01865 [Enterococcus faecalis TX4248] Length = 448 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 I +K ++I Y ++ + D + +FVG+NG+GKT IL I FL + YA + Sbjct: 10 INLKQIDIEGLHGYYNVSIPLDKKANLFVGENGLGKTTILNIIYFL------LKKEYAKL 63 Query: 65 TR 66 T+ Sbjct: 64 TK 65 >gi|85712484|ref|ZP_01043533.1| Chromosome segregation ATPase, sms [Idiomarina baltica OS145] gi|85693762|gb|EAQ31711.1| Chromosome segregation ATPase, sms [Idiomarina baltica OS145] Length = 581 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 18/113 (15%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + ++ F Q T VG NG GK+N+++A+ ++ S + R + Sbjct: 1 MRLKHIKLAGFKSFVDATKVPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60 Query: 61 YADVTRIGSPS------------FFSTFARVEG-MEGLADISIKLE-TRDDRS 99 DV GS + F +T R++G +IS+K + TRD +S Sbjct: 61 MTDVIFNGSQARKPVSQASVELVFDNTSGRIQGEFASYNEISVKRQVTRDGQS 113 >gi|293393082|ref|ZP_06637397.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291424228|gb|EFE97442.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 548 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 5 IKIKFLNI-SEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFLSPGRGFRRA-- 59 +K+ L+I S F+N ++ + FD H T+ VG NG GK+N+LEA+ + A Sbjct: 1 MKVDKLHIRSRFKNLENVTVDFDQDHLMTVIVGRNGSGKSNVLEALVSIFRNLDLGEAPP 60 Query: 60 -SYADVTRIGSP 70 SY V R+G P Sbjct: 61 FSYELVYRLGEP 72 >gi|49481899|gb|AAT66661.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A90] Length = 573 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|49481925|gb|AAT66674.1| DNA repair and genetic recombination protein [Geobacillus uzenensis] Length = 573 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|157372541|ref|YP_001480530.1| ABC transporter-like protein [Serratia proteamaculans 568] gi|157324305|gb|ABV43402.1| ABC transporter-related protein [Serratia proteamaculans 568] Length = 539 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 44/100 (44%), Gaps = 16/100 (16%) Query: 18 YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-PGRGF--RRASYADVTR-------- 66 + L L FD Q VG NGVGKT +L I+ L PG G AS A V + Sbjct: 26 FGPLDLTFDQQRCGLVGRNGVGKTRLLRLIAGLDLPGNGHVESHASLAYVAQQPDLAPRT 85 Query: 67 -----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101 +G F+ AR+E AD +LE + D S R Sbjct: 86 TLAQLLGYGETFAALARLEQGRPQADDIDRLEGQWDLSDR 125 >gi|49481889|gb|AAT66656.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|49481895|gb|AAT66659.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A88] Length = 573 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|49481883|gb|AAT66653.1| DNA repair and genetic recombination protein [Bacillus caldovelox] Length = 573 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|295693198|ref|YP_003601808.1| DNA repair protein recn [Lactobacillus crispatus ST1] gi|295031304|emb|CBL50783.1| DNA repair protein RecN [Lactobacillus crispatus ST1] Length = 560 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 L+I F SL++ F + T+ +G+ G GK+ I++A+S L GRG + Sbjct: 5 LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQKE 53 >gi|38146942|gb|AAR11857.1| DNA repair and genetic recombination [Geobacillus stearothermophilus] Length = 573 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|49481897|gb|AAT66660.1| DNA repair and genetic recombination protein [Geobacillus lituanicus] Length = 573 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|49481881|gb|AAT66652.1| DNA repair and genetic recombination protein [Bacillus caldotenax] gi|49481887|gb|AAT66655.1| DNA repair and genetic recombination protein [Geobacillus vulcani] Length = 573 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|56420924|ref|YP_148242.1| DNA repair protein [Geobacillus kaustophilus HTA426] gi|47076824|dbj|BAD18364.1| DNA repair protein [Geobacillus kaustophilus] gi|49481875|gb|AAT66649.1| DNA repair and genetic recombination protein [Geobacillus kaustophilus] gi|49481885|gb|AAT66654.1| DNA repair and genetic recombination protein [Geobacillus thermoleovorans] gi|49481893|gb|AAT66658.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A60] gi|56380766|dbj|BAD76674.1| DNA repair protein (recombination protein N) [Geobacillus kaustophilus HTA426] gi|312985018|gb|ADR30683.1| RecN [Geobacillus kaustophilus] Length = 573 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|327183845|gb|AEA32292.1| DNA repair protein recn [Lactobacillus amylovorus GRL 1118] Length = 560 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 L+I F SL++ F + T+ +G+ G GK+ I++A+S L GRG Sbjct: 5 LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRG 50 >gi|227893302|ref|ZP_04011107.1| DNA repair protein [Lactobacillus ultunensis DSM 16047] gi|227864882|gb|EEJ72303.1| DNA repair protein [Lactobacillus ultunensis DSM 16047] Length = 560 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 L+I F SL++ F + T+ +G+ G GK+ I++A+S L GRG + Sbjct: 5 LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQKE 53 >gi|225874788|ref|YP_002756247.1| hypothetical protein ACP_3245 [Acidobacterium capsulatum ATCC 51196] gi|225792214|gb|ACO32304.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC 51196] Length = 615 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59 ++++ L I+ FR A + F HT+ VG N +GK+ I EA+ L P R FRR Sbjct: 1 MRVRRLKITHFRGVAEGSVDFTG-HTLLVGGNNIGKSTICEALDLVLGPERLFRRP 55 >gi|145301156|ref|YP_001143997.1| hypothetical protein ASA_4333 [Aeromonas salmonicida subsp. salmonicida A449] gi|142853928|gb|ABO92249.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 483 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 5 IKIKFLNI-SEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFLSPGRGFRRA-- 59 +K+ L+I S F+N ++++ FD H T+ VG NG GK+N+LEA+ + A Sbjct: 1 MKVNNLHIRSRFKNLENVKVDFDENHLMTVVVGRNGSGKSNVLEALVAIFRNLDLGDAPP 60 Query: 60 -SYADVTRIGSP 70 SY + R+G P Sbjct: 61 FSYELIYRLGEP 72 >gi|49481891|gb|AAT66657.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|49481877|gb|AAT66650.1| DNA repair and genetic recombination protein [Geobacillus thermocatenulatus] Length = 573 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|288560363|ref|YP_003423849.1| DNA double-strand break repair protein Rad50 [Methanobrevibacter ruminantium M1] gi|288543073|gb|ADC46957.1| DNA double-strand break repair protein Rad50 [Methanobrevibacter ruminantium M1] Length = 932 Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 27/42 (64%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 K L + F+++A L D ++ VG+NG GK++I EAISF Sbjct: 4 KHLQLKNFKSHADTELDLDLGISLIVGENGAGKSSIFEAISF 45 >gi|300811183|ref|ZP_07091693.1| ABC transporter, ATP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497827|gb|EFK32839.1| ABC transporter, ATP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 212 Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 17/97 (17%) Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314 RK D +R + DL DY DK IT G +Q+V L+ L F Sbjct: 104 RKQDFAEKRAQEALKQVDLPADYLDKKITTLSGGE-KQRVALIRNLL-----------FR 151 Query: 315 P-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 P +LLLDE++ LDE+ + RIV + +++ GT Sbjct: 152 PEVLLLDEVTTGLDEESK----RIVHQLIARVHQEGT 184 >gi|116075787|ref|ZP_01473046.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. RS9916] gi|116067102|gb|EAU72857.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. RS9916] Length = 356 Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust. Identities = 82/357 (22%), Positives = 156/357 (43%), Gaps = 42/357 (11%) Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE 80 ++L +A + +G NGVGK+N+LE++ L R R + D+ + + AR++ Sbjct: 1 MQLEIEAPRLLVIGRNGVGKSNLLESVELLGSLRSHRASQDQDLI-----HWDAREARLK 55 Query: 81 GMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139 D + ++L + R + R L + L + + P FS L + Sbjct: 56 ARTVDHDELELQLRRKGGRQAK---------RNGKNLERQLDL--IGPLRCVGFSALDLH 104 Query: 140 --------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSI 186 RR +LDR+V ++P + + + RL+R R +L G S + Sbjct: 105 LVRGEPALRRSWLDRVVLQLEPIYAELISRYSRLLRQRAQLWRRGRGMPSAERDALLDTF 164 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFC- 241 + QMA + +I+ R + L L ++ + + +L+L L+G+ + Sbjct: 165 DLQMALISTRIHRRRRRALARLEPLASQWQTHLSQGNEQLTLRYQPGSRLEGEEAEEPWR 224 Query: 242 -ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A+ E+ + + ++ S +GPHR ++ +D GS G+Q+ +++ + Sbjct: 225 LAIGEQLKLQRSEEERLGSCR----VGPHRDEISLDLNGNPAR-RFGSAGQQRTLVLALK 279 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 LA L+ G P+LLLD++ A LD +++ L V D Q ++ T F+ Sbjct: 280 LAELELVGELWGQPPLLLLDDVLAELDPERQLTLLEAVGD-EHQCLVSATHLDAFEG 335 >gi|295110147|emb|CBL24100.1| Predicted ATPases [Ruminococcus obeum A2-162] Length = 368 Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I +NI FR +LRL AQ I G+N GKT++LE I L ++ ++R Sbjct: 4 INEINIKSFRGIRNLRLTDLAQVNIIAGNNNCGKTSVLEIIESLRQPDDI--LMWSSLSR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIK 91 + S + + EG+ L DI+I+ Sbjct: 62 RTTTSMRNRMSFYEGIYDLFDINIE 86 >gi|154246976|ref|YP_001417934.1| ATP-dependent endonuclease family protein [Xanthobacter autotrophicus Py2] gi|154161061|gb|ABS68277.1| ATP-dependent endonuclease family protein [Xanthobacter autotrophicus Py2] Length = 598 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRAS 60 +KI + I FR S +LV H + +GDN GK+++ EAI L P R RR Sbjct: 1 MKIFSVGIENFRGIQSAKLVL-PDHAVLIGDNNTGKSSVFEAIDLALGPDRLSRRPP 56 >gi|224025067|ref|ZP_03643433.1| hypothetical protein BACCOPRO_01801 [Bacteroides coprophilus DSM 18228] gi|224018303|gb|EEF76301.1| hypothetical protein BACCOPRO_01801 [Bacteroides coprophilus DSM 18228] Length = 516 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYADVT 65 IK + + FR Y S V + T FVG N +GK+ ILEA+ F + G+G D+ Sbjct: 3 IKSVTLKNFRGYRSETTVLFSNLTTFVGRNDIGKSTILEALDIFFNEGKGCISLDKEDIN 62 Query: 66 RIGS 69 + S Sbjct: 63 KRAS 66 >gi|50084058|ref|YP_045568.1| putative chromosome segregation ATPase [Acinetobacter sp. ADP1] gi|49530034|emb|CAG67746.1| putative chromosome segregation ATPases [Acinetobacter sp. ADP1] Length = 1149 Score = 39.3 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L ++ F+++A S L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLAGFKSFADSATLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|303248994|ref|ZP_07335239.1| ABC transporter related protein [Desulfovibrio fructosovorans JJ] gi|302489580|gb|EFL49520.1| ABC transporter related protein [Desulfovibrio fructosovorans JJ] Length = 665 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 26/112 (23%) Query: 253 DGRKMDSMSRRTLIGPHRSDLIV-----------DYCDKAITIAHGSTGEQ-KVVLVGIF 300 D M M R + GP + L V DY ++ ++ G GE+ ++VL G+F Sbjct: 406 DALVMSEMKR--MAGPKATHLEVCSILGLFLLGEDYWERRVSELSG--GEKSRLVLAGLF 461 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 A A L+LDE + HLD + R AL R ++D I M D+ Sbjct: 462 SARANF----------LVLDEPTNHLDLESREALVRALSDYSGAILMVAHDR 503 >gi|226940717|ref|YP_002795791.1| RecF [Laribacter hongkongensis HLHK9] gi|226715644|gb|ACO74782.1| RecF [Laribacter hongkongensis HLHK9] Length = 610 Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 37/80 (46%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + + F+ S RL T+ G NG GK+++LEA+ G R A D Sbjct: 1 MKLTRIEVQNFQGLRSARLALTTPVTLIAGRNGAGKSSLLEAVRMAMSGDPVRVARKKDC 60 Query: 65 TRIGSPSFFSTFARVEGMEG 84 ++ + + RVE +G Sbjct: 61 VQLVTDGHKAGMVRVEFADG 80 >gi|295689926|ref|YP_003593619.1| chromosome partition protein [Caulobacter segnis ATCC 21756] gi|295431829|gb|ADG11001.1| chromosome partition protein [Caulobacter segnis ATCC 21756] Length = 604 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 L I FR S R+ F QHT+ VG N GKT I+EA++ L Sbjct: 6 LRIENFRGIRSGRVRF-GQHTVLVGPNNSGKTTIIEALALL 45 >gi|167548992|ref|ZP_02342751.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325625|gb|EDZ13464.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 465 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61 ++I L++ FR + L + FD TI V NG GKT +L+AI L P RGF + Y Sbjct: 1 MRINKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRLTLFPFIRGFDASLY 59 >gi|229543907|ref|ZP_04432966.1| DNA repair protein RecN [Bacillus coagulans 36D1] gi|229325046|gb|EEN90722.1| DNA repair protein RecN [Bacillus coagulans 36D1] Length = 567 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L+I F +L L F+A T+ G+ G GK+ I++AI L+ GRG Sbjct: 2 LQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRG 50 >gi|325276064|ref|ZP_08141876.1| hypothetical protein G1E_21571 [Pseudomonas sp. TJI-51] gi|324098786|gb|EGB96820.1| hypothetical protein G1E_21571 [Pseudomonas sp. TJI-51] Length = 769 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56 + I ++ L + +FR ++L D + TI VG N GKT++L A+ FLS G F Sbjct: 10 VAGSITLRLLELCQFRRLGKVQLDIDKKTTILVGANNSGKTSVLAALRHFLSDGSRF 66 >gi|270291691|ref|ZP_06197907.1| putative ATP-binding protein [Streptococcus sp. M143] gi|270279776|gb|EFA25617.1| putative ATP-binding protein [Streptococcus sp. M143] Length = 490 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 I+ I+ NY + L F TI++G+NG+GKT IL + +L Sbjct: 4 IEKFKINNLHNYYDVELNFKNDKTIYIGENGIGKTTILSILYYL 47 >gi|119486512|ref|ZP_01620570.1| hypothetical protein L8106_00920 [Lyngbya sp. PCC 8106] gi|119456414|gb|EAW37545.1| hypothetical protein L8106_00920 [Lyngbya sp. PCC 8106] Length = 382 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 26/44 (59%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +K L I FR + S L + + VG+N GKT+ILEAI FL Sbjct: 2 LKTLKIENFRGFQSFELQSLGRVNLLVGENNSGKTSILEAIQFL 45 >gi|49481959|gb|AAT66691.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A84] Length = 573 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 19/103 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LXIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 A +EG+ L D DDR C + +V I V Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88 >gi|58337600|ref|YP_194185.1| DNA repair protein [Lactobacillus acidophilus NCFM] gi|227904240|ref|ZP_04022045.1| DNA repair protein [Lactobacillus acidophilus ATCC 4796] gi|58254917|gb|AAV43154.1| DNA repair protein [Lactobacillus acidophilus NCFM] gi|227867888|gb|EEJ75309.1| DNA repair protein [Lactobacillus acidophilus ATCC 4796] Length = 560 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 L+I F SL++ F + T+ +G+ G GK+ I++A+S L GRG Sbjct: 5 LDIQNFAIIKSLKVRFQERMTVIIGETGAGKSIIIDAVSLLMGGRG 50 >gi|298377208|ref|ZP_06987162.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298266192|gb|EFI07851.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 516 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYADVT 65 IK + + FR Y S V + T FVG N +GK+ ILEA+ F + G+G D+ Sbjct: 3 IKSVTLKNFRGYRSETTVLFSNLTTFVGRNDIGKSTILEALDIFFNEGKGCIPLDKEDIN 62 Query: 66 RIGS 69 + S Sbjct: 63 KRAS 66 >gi|311992855|ref|YP_004009722.1| gp46 recombination endonuclease subunit [Acinetobacter phage Acj61] gi|295815144|gb|ADG36070.1| gp46 recombination endonuclease subunit [Acinetobacter phage Acj61] Length = 559 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 6/54 (11%) Query: 10 LNISEFRNYAS-----LRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFR 57 LN ++N S +R+ DA H T+ G NG GK+ +LEAI+F G+ FR Sbjct: 6 LNSVAYKNIMSVGDTEIRIALDAHHKTLITGKNGGGKSTMLEAITFALFGKPFR 59 >gi|295111234|emb|CBL27984.1| hypothetical protein [Synergistetes bacterium SGP1] Length = 377 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 K++ N FRN+A L D + G NG GKT+++E + L+ S Sbjct: 4 KLEIHNYKLFRNFA---LELDGGVNLLCGPNGSGKTSVIEIVYALTRFLAIPDHSDTIAC 60 Query: 66 RIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIR 111 + F TF R E G ++S+KLE D + L I D+ +R Sbjct: 61 SVEDAFPFRTFCRWCTEENGWGEMSVKLEIESDE--QPLYIYDLTVR 105 >gi|91976764|ref|YP_569423.1| ATP-dependent OLD family endonuclease [Rhodopseudomonas palustris BisB5] gi|91683220|gb|ABE39522.1| ATP-dependent endonuclease of the OLD family-like [Rhodopseudomonas palustris BisB5] Length = 669 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + ++ FR++ + T+FVG+N GK+N ++A+ L+ G RR Y + T Sbjct: 3 LKNMKLNSFRSFDQGEIELQKDLTVFVGENNGGKSNAIDAVRLLTTPLGGRREIYCESTD 62 Query: 67 I 67 + Sbjct: 63 V 63 >gi|320088176|emb|CBY97938.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 396 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61 ++I L++ FR + L + FD TI V NG GKT +L+AI L P RGF + Y Sbjct: 1 MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRLALFPFIRGFDASLY 59 >gi|16767037|ref|NP_462652.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422321|gb|AAL22611.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|267996020|gb|ACY90905.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312914778|dbj|BAJ38752.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226808|gb|EFX51858.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332990601|gb|AEF09584.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 396 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61 ++I L++ FR + L + FD TI V NG GKT +L+AI L P RGF + Y Sbjct: 1 MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRLALFPFIRGFDASLY 59 >gi|289667384|ref|ZP_06488459.1| hypothetical protein XcampmN_02412 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 231 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63 +KIK + ++ FR Y+ +V ++ VG N +GK+ ILEA+ F + G+G + D Sbjct: 1 MKIKAVTVNRFRGYSEPVIVGLDDLSVLVGRNDIGKSTILEALDVFFNEGKGCIKLDKED 60 Query: 64 VTR 66 + + Sbjct: 61 INK 63 >gi|256824497|ref|YP_003148457.1| hypothetical protein Ksed_06300 [Kytococcus sedentarius DSM 20547] gi|256687890|gb|ACV05692.1| hypothetical protein Ksed_06300 [Kytococcus sedentarius DSM 20547] Length = 854 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 16/110 (14%) Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 D F + AL+ F GR+ + R+ L G H+ ++ S GEQ Sbjct: 582 DALFSEECAALRAPALHVEFVGRQGRAQRRKILSGKHKPSKVL------------SEGEQ 629 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 KV+ + FLA ARL T AP++ D +S+ LD + N + + V + Sbjct: 630 KVLAIADFLAEARLAGIT---APVIFDDPVSS-LDHRRINEVAQRVASLA 675 >gi|262276826|ref|ZP_06054619.1| chromosome segregation protein SMC [alpha proteobacterium HIMB114] gi|262223929|gb|EEY74388.1| chromosome segregation protein SMC [alpha proteobacterium HIMB114] Length = 809 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 12/97 (12%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K K + +S F+++A F+ T VG NG GK+N++EA+ + + + R + Sbjct: 1 MKFKEIEVSGFKSFADKTNFYFEKGLTGIVGPNGCGKSNVVEALRWAMGETSAKSLRGSG 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97 DV G+ + S + + ++SIKLE DD Sbjct: 61 MEDVIFNGTSNRPS--------KNICEVSIKLENNDD 89 >gi|117921399|ref|YP_870591.1| hypothetical protein Shewana3_2959 [Shewanella sp. ANA-3] gi|117613731|gb|ABK49185.1| hypothetical protein Shewana3_2959 [Shewanella sp. ANA-3] Length = 533 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 16/77 (20%) Query: 5 IKIKFLNI-SEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFLSPGRGFRRA-- 59 +K+ L+I S F+N ++++ FD H T+ VG NG GK+N+LEA+ + FR Sbjct: 1 MKVDKLHIRSRFKNLENVKVDFDEDHLMTVVVGRNGSGKSNVLEALVAI-----FRNLDL 55 Query: 60 ------SYADVTRIGSP 70 SY + R+G P Sbjct: 56 GEEPPFSYELIYRLGEP 72 >gi|323340827|ref|ZP_08081079.1| DNA repair protein RecN [Lactobacillus ruminis ATCC 25644] gi|323091950|gb|EFZ34570.1| DNA repair protein RecN [Lactobacillus ruminis ATCC 25644] Length = 562 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L I +F + L F +Q T+ G+ G GK+ I++A+ LS GRG Sbjct: 2 LQELTIRDFAIIEKMDLEFQSQMTVLTGETGAGKSIIIDALGLLSGGRG 50 >gi|189426540|ref|YP_001953717.1| chromosome segregation protein SMC [Geobacter lovleyi SZ] gi|189422799|gb|ACD97197.1| chromosome segregation protein SMC [Geobacter lovleyi SZ] Length = 1177 Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 14/100 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAISFL---SPGRGFRRA 59 +KIK L I+ F+++A ++V D Q + VG NG GK+NI++A+ + + R Sbjct: 1 MKIKRLEIAGFKSFAD-KVVLDFQQGVTGVVGPNGCGKSNIVDAMRWCMGEQSAKNLRGK 59 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99 + D+ GS S G+A++S+ T D R+ Sbjct: 60 AMEDIIFAGSDS--------RKPLGMAEVSLVFSTEDGRA 91 >gi|238022683|ref|ZP_04603109.1| hypothetical protein GCWU000324_02592 [Kingella oralis ATCC 51147] gi|237865886|gb|EEP67022.1| hypothetical protein GCWU000324_02592 [Kingella oralis ATCC 51147] Length = 298 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 11/140 (7%) Query: 32 FVGDNGVGKTNILEAISFLSP---------GRGFRRASYADVTRIG-SPSFFSTFARVEG 81 +G NG GKT ++ ++ L P G+ R S A+ +IG P F+ + ++ Sbjct: 34 LLGHNGAGKTTLMSLLAGLQPVRHGAVLFDGKPLHRLSRAERQKIGLVPQDFAFYPQLSV 93 Query: 82 MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR 141 + L + + RD +R L + + KHL L ++ ++ + Sbjct: 94 WDNLLFFASLYKMRDKNKLRGLIEQAGLQEHAHKAAKHLS-GGLKRRLNFAVGLVNAPQL 152 Query: 142 RFLDRMVFAIDPRHRRRMID 161 FLD + IDP+ RR ++D Sbjct: 153 VFLDEITVGIDPQSRRFILD 172 >gi|260170441|ref|ZP_05756853.1| hypothetical protein BacD2_01103 [Bacteroides sp. D2] gi|315918795|ref|ZP_07915035.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692670|gb|EFS29505.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 589 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 ++I ++I FR + R+ FD TIFVG N GKT+ + AI + G+ Sbjct: 1 MRINHVHIRNFRKLRNCRIDFDENQTIFVGANNSGKTSAMSAIIWFLKGK 50 >gi|71027371|ref|XP_763329.1| hypothetical protein [Theileria parva strain Muguga] gi|68350282|gb|EAN31046.1| hypothetical protein TP03_0311 [Theileria parva] Length = 992 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 8/79 (10%) Query: 7 IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY-- 61 IK + + FR Y L L + VG NG GK+N+L A+SF+ GF R+ Y Sbjct: 3 IKLIRLKNFRTYKDLTLFSLSPNYNAIVGLNGSGKSNVLLAVSFVLGDSVPGFTRSDYLF 62 Query: 62 -ADVTRIGSPSFFSTFARV 79 D + SP FS FA + Sbjct: 63 KGDQSST-SPD-FSAFAEL 79 >gi|262375657|ref|ZP_06068889.1| chromosome segregation protein SMC [Acinetobacter lwoffii SH145] gi|262309260|gb|EEY90391.1| chromosome segregation protein SMC [Acinetobacter lwoffii SH145] Length = 1150 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLHFKDNRTAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|300767242|ref|ZP_07077154.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180456|ref|YP_003924584.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495061|gb|EFK30217.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045947|gb|ADN98490.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum ST-III] Length = 564 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L+I+ F L + F+A T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG 50 >gi|298676002|ref|YP_003727752.1| SMC domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288990|gb|ADI74956.1| SMC domain protein [Methanohalobium evestigatum Z-7303] Length = 888 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 28/173 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS---- 60 +K+K L + R+Y L L F+ ++ G NG GK+++LEA F + G R S Sbjct: 1 MKLKRLYVENIRSYEYLDLSFNNGVSVVSGANGSGKSSLLEA--FFTGLFGSRTLSKEYV 58 Query: 61 YADVTRIGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 AD+ R G+ S S + +E G E + + + +T++DR+ + V + N Sbjct: 59 LADMIRKGA-SKASIYLELEQNGNEYIIEQGFRYDTKNDRAYNS--------KSVFKSNG 109 Query: 119 HLRISWLVPSMDRIFSGLSMERRRF----------LDRMVFAIDPRHRRRMID 161 ++ + + D + L+M+ + +D ++ A P+ R+ MID Sbjct: 110 NIVVDQATQTYDAVCKLLNMDEEAYRNCVYIRQGEIDILINAT-PKERQNMID 161 >gi|254556513|ref|YP_003062930.1| DNA repair protein RecN [Lactobacillus plantarum JDM1] gi|254045440|gb|ACT62233.1| DNA repair protein RecN [Lactobacillus plantarum JDM1] Length = 564 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L+I+ F L + F+A T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG 50 >gi|311029251|ref|ZP_07707341.1| putative ABC transporter ATP-binding protein [Bacillus sp. m3-13] Length = 298 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 33/221 (14%) Query: 32 FVGDNGVGKTNILEAIS-FLSPGRG---FRRASYADV-TRIG----SPSFFSTFARVEGM 82 +G NG GKT L+ ++ L+P G F + D +IG PSFFS E + Sbjct: 33 LLGPNGAGKTTTLQMLAGLLTPTSGNISFSENNEKDYRHQIGFLPQHPSFFSWMTPKEYL 92 Query: 83 EGLADIS----IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSM 138 + +S +L+T+ + ++ + + DV K+ RI M + GL+ Sbjct: 93 QFAGKLSHLPKAQLKTKIEETLEFVSLTDV---------KNKRIGGFSGGMKQRL-GLAQ 142 Query: 139 -----ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 LD V A+DP RR ++ +++ R +L F + E Q+ + Sbjct: 143 ALLHDPELLILDEPVSALDPDGRRDVLKILTVLKSRMTIL----FSTHVLHDAE-QVCDT 197 Query: 194 GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + + +++ +L SL E+ + SLTG LDG Sbjct: 198 VIMLKDGQIKWDGSLDSLRSEHTTSAVKIKTEESLTGQLDG 238 >gi|262369275|ref|ZP_06062603.1| chromosome segregation ATPase [Acinetobacter johnsonii SH046] gi|262315343|gb|EEY96382.1| chromosome segregation ATPase [Acinetobacter johnsonii SH046] Length = 1150 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLHFKDNRTAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|191165831|ref|ZP_03027669.1| ATP binding protein [Escherichia coli B7A] gi|227883873|ref|ZP_04001678.1| ATP binding protein [Escherichia coli 83972] gi|190904155|gb|EDV63866.1| ATP binding protein [Escherichia coli B7A] gi|227839151|gb|EEJ49617.1| ATP binding protein [Escherichia coli 83972] gi|307555798|gb|ADN48573.1| ATP binding protein [Escherichia coli ABU 83972] Length = 465 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61 ++I L++ FR + L + FD TI V NG GKT +L+A+ L P RGF + Y Sbjct: 1 MRIDKLSLLNFRCFKQLDITFDEHITILVAPNGAGKTTVLDAVRLALFPFIRGFDASLY 59 >gi|300984863|ref|ZP_07177151.1| RecF/RecN/SMC protein [Escherichia coli MS 45-1] gi|300408292|gb|EFJ91830.1| RecF/RecN/SMC protein [Escherichia coli MS 45-1] gi|315292954|gb|EFU52306.1| RecF/RecN/SMC protein [Escherichia coli MS 153-1] Length = 465 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61 ++I L++ FR + L + FD TI V NG GKT +L+A+ L P RGF + Y Sbjct: 1 MRIDKLSLLNFRCFKQLDITFDEHITILVAPNGAGKTTVLDAVRLALFPFIRGFDASLY 59 >gi|291296300|ref|YP_003507698.1| ABC transporter-like protein [Meiothermus ruber DSM 1279] gi|290471259|gb|ADD28678.1| ABC transporter related protein [Meiothermus ruber DSM 1279] Length = 335 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASY-ADVTRIGS-PSFFSTFARVEGMEGLA 86 T+ +G++GVGKT++L+AI+ L P RG A A+ R+G P + F + + +A Sbjct: 23 TVLLGESGVGKTSLLKAIAGLIPARGQPFAGLRAEARRVGYLPQHLALFPHLRAWQNVA 81 >gi|164686808|ref|ZP_02210836.1| hypothetical protein CLOBAR_00404 [Clostridium bartlettii DSM 16795] gi|164604198|gb|EDQ97663.1| hypothetical protein CLOBAR_00404 [Clostridium bartlettii DSM 16795] Length = 581 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +K L+I+ FRN+ S+ + D ++ +F G N VGKTN L A+ FL Sbjct: 3 LKKLDINNFRNFNSISIELDNKNVVF-GMNDVGKTNFLYALRFL 45 >gi|225848653|ref|YP_002728816.1| ATP/GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643843|gb|ACN98893.1| ATP/GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 484 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 11/107 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63 +K++ +NI FR Y V T+FVG N GK++ILEA+ F + GR R + D Sbjct: 1 MKLRKINIENFRCYKDETEVEIEDLTVFVGANDSGKSSILEALDIFFNEGRAEIRFTEDD 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 + + AR+EG + I+ E ++ +R L+ N++ I Sbjct: 61 I---------NIHARMEGKHDVK-ITCVFEDIPEQFLRRLEENNIPI 97 >gi|218678131|ref|ZP_03526028.1| ATP-dependent endonuclease of the OLD family-like protein [Rhizobium etli CIAT 894] Length = 85 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 7/55 (12%) Query: 7 IKFLNISEFRNYASLRL---VFDAQH----TIFVGDNGVGKTNILEAISFLSPGR 54 ++ L+I FR +++ + V + H T+FVG+NG GKT++LEA+ +L GR Sbjct: 8 VRELSIDNFRCFSAETIKLAVPNGSHGSGLTLFVGNNGTGKTSVLEALDYLFSGR 62 >gi|28378306|ref|NP_785198.1| DNA repair protein RecN [Lactobacillus plantarum WCFS1] gi|28271141|emb|CAD64046.1| DNA repair protein RecN [Lactobacillus plantarum WCFS1] Length = 564 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L+I+ F L + F+A T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG 50 >gi|197303925|ref|ZP_03168957.1| hypothetical protein RUMLAC_02662 [Ruminococcus lactaris ATCC 29176] gi|197296893|gb|EDY31461.1| hypothetical protein RUMLAC_02662 [Ruminococcus lactaris ATCC 29176] Length = 517 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63 +KI + I FR Y + T+FVG N +GK+ ILEA+ F + G+G + D Sbjct: 1 MKIDSIKIKNFRGYKDETKIELNDLTVFVGKNDIGKSTILEALDIFFNDGKGVIKLDKTD 60 Query: 64 VT 65 V Sbjct: 61 VN 62 >gi|1335781|gb|AAC47078.1| Cap [Drosophila melanogaster] Length = 1231 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Query: 3 NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 N++ IK + I F++Y +V FD +H + VG NG GK+N AI F+ Sbjct: 30 NKMHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFV 79 >gi|108800975|ref|YP_641172.1| ABC transporter related [Mycobacterium sp. MCS] gi|119870115|ref|YP_940067.1| ABC transporter related [Mycobacterium sp. KMS] gi|126436812|ref|YP_001072503.1| ABC transporter related [Mycobacterium sp. JLS] gi|108771394|gb|ABG10116.1| ABC transporter related protein [Mycobacterium sp. MCS] gi|119696204|gb|ABL93277.1| ABC transporter related protein [Mycobacterium sp. KMS] gi|126236612|gb|ABO00013.1| ABC transporter related protein [Mycobacterium sp. JLS] Length = 537 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 +LLLDE + +LD D RNAL+ + D + + D+ + D ++ A+ R Sbjct: 161 VLLLDEPTNNLDADARNALYAALDDFAGTLLLVSHDRVLLDRMDRIAELSR 211 >gi|4324607|gb|AAD16951.1| putative ATP binding protein SugR [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 519 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61 ++I L++ FR + L + FD TI V NG GKT +L+AI L P RGF + Y Sbjct: 1 MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRLALFPFIRGFDASLY 59 >gi|284929017|ref|YP_003421539.1| RecF/RecN/SMC N-terminal domain-containing protein [cyanobacterium UCYN-A] gi|284809476|gb|ADB95181.1| RecF/RecN/SMC N-terminal domain-containing protein [cyanobacterium UCYN-A] Length = 1008 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADV 64 L + F +Y + L F HT+ + G NG GK+++LEAI++ G+G R +S DV Sbjct: 6 LTLKNFLSYQDVTLDFQGLHTVCICGANGAGKSSLLEAIAWTVWGQG-RTSSDEDV 60 >gi|255102069|ref|ZP_05331046.1| V-type ATP synthase subunit C [Clostridium difficile QCD-63q42] Length = 325 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 33/69 (47%) Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70 N+ F +++ FD +FV + K LEA S +P F+ SY DV + G Sbjct: 196 NLKSFIRVKNMKKDFDMFMNVFVSGGSLDKEKFLEAFSSDTPASCFKSTSYFDVCKNGMD 255 Query: 71 SFFSTFARV 79 S F+ F ++ Sbjct: 256 SGFTVFEKL 264 >gi|312865861|ref|ZP_07726083.1| putative DNA replication and repair protein RecF [Streptococcus downei F0415] gi|311098736|gb|EFQ56958.1| putative DNA replication and repair protein RecF [Streptococcus downei F0415] Length = 94 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S G+Q+ +++ + LA LI TG +PILLLD++ + LD ++ L + + Q F Sbjct: 6 ASQGQQRSLILSLKLAEIELIKAITGDSPILLLDDVMSELDNHRQLRLLDGIKE-NVQTF 64 Query: 347 MTGTDKSVFDSLNETAKFMRISN 369 +T T L + K +S Sbjct: 65 ITTTSLDHLQGLPDDLKIFTVSQ 87 >gi|169347061|ref|ZP_02866003.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|169296744|gb|EDS78873.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] Length = 579 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +K K L I FRN+ + + D ++ IF G N +GKTN L AI FL Sbjct: 1 MKFKSLEIKNFRNFECININLDNKNVIF-GMNDIGKTNFLYAIRFL 45 >gi|325271471|ref|ZP_08137992.1| hypothetical protein G1E_01626 [Pseudomonas sp. TJI-51] gi|324103395|gb|EGC00721.1| hypothetical protein G1E_01626 [Pseudomonas sp. TJI-51] Length = 435 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 24/82 (29%) Query: 7 IKFLNISEFRNYASLRLVFDA-----QHTIFVGDNGVGKTNILEAISF------------ 49 I+F NI F++++ L F+ Q T+F+GDNG GKT IL AI+ Sbjct: 8 IQFSNIRGFKDFS---LSFEEGKKHRQWTVFIGDNGHGKTTILRAIALGLGDEVTSSELL 64 Query: 50 -LSPGRGFR---RASYADVTRI 67 L PG+ R R YA ++I Sbjct: 65 ALLPGKFIRMNKRGIYAPSSKI 86 >gi|120601903|ref|YP_966303.1| SMC domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562132|gb|ABM27876.1| SMC domain protein [Desulfovibrio vulgaris DP4] Length = 556 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL 50 +++ + + +F+N + + FD H T+ +G NG GK+N+LEA++ L Sbjct: 1 MRLDWFWVEDFKNLKDVTIDFDESHWVTVVIGWNGTGKSNVLEALATL 48 >gi|17933343|gb|AAL48252.1|AF451891_2 RecN [Lactobacillus plantarum subsp. plantarum] Length = 420 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L+I+ F L + F+A T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG 50 >gi|150388685|ref|YP_001318734.1| SMC domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948547|gb|ABR47075.1| SMC domain protein [Alkaliphilus metalliredigens QYMF] Length = 438 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 33/48 (68%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAISFL 50 +K++++ + ++N + + F+ Q ++ F+G+NG GK+NILE I+ + Sbjct: 1 MKMEYIYVHGYKNLNDIEIYFEPQSSVNSFIGNNGSGKSNILEVIAII 48 >gi|323388484|gb|ADX60531.1| RecN [Geobacillus sp. NTU 03] Length = 573 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 26/46 (56%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 L+I F SL L FD T+ G+ G GK+ I++AI L GRG Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG 50 >gi|126663754|ref|ZP_01734750.1| hypothetical protein FBBAL38_11809 [Flavobacteria bacterium BAL38] gi|126624337|gb|EAZ95029.1| hypothetical protein FBBAL38_11809 [Flavobacteria bacterium BAL38] Length = 400 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 24/205 (11%) Query: 86 ADISIKLETRDDRSVRCLQINDVVIRVVDELN--------KHLRISWLVPSMDRIFSGLS 137 ++ +K+ET D R Q +D+ I V +LN K + I L+P+ F + Sbjct: 32 SEAKVKVETSDIRIFSDEQYSDLGIEVTSDLNDCDVLFGVKEVPIDALLPNKKYFFFSHT 91 Query: 138 MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK- 196 ++++ + +++ AI ++ + D E ++ N+ L G+ + G+K Sbjct: 92 IKKQSYNRKLLQAILEKN-IELYDHETIVDATNKRLI-GFGRYAGIVGAYNGFRAFGIKY 149 Query: 197 --INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 N+A+ E + LI ++++ P+IK+ LTG GK AK++ DG Sbjct: 150 DLFNVAKAETLKNREDLIAR-LKRQTLPNIKIVLTGH--GKVGMG--------AKEILDG 198 Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCD 279 K+ ++ + S+ + D Sbjct: 199 IKIKQVAIEDFLSKQYSEPVYTQID 223 >gi|86607501|ref|YP_476264.1| chromosome segregation protein SMC [Synechococcus sp. JA-3-3Ab] gi|86556043|gb|ABD01001.1| chromosome segregation protein SMC [Synechococcus sp. JA-3-3Ab] Length = 1180 Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 7/78 (8%) Query: 7 IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62 IK + ++ F+++ S L T+ G NG GK+NIL+ I F LS RG R + Sbjct: 3 IKRIELTRFKSFGSTTSLPLLPGFTVISGPNGSGKSNILDGILFALGLSSSRGMRAERLS 62 Query: 63 DVTRIGSPSFFSTFARVE 80 D+ GS S+ RVE Sbjct: 63 DLVHSGS---LSSNRRVE 77 >gi|145298233|ref|YP_001141074.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp. salmonicida A449] gi|142851005|gb|ABO89326.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp. salmonicida A449] Length = 1124 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ R+ F A T VG NG GK+N+++A+ ++ S R R + Sbjct: 1 MRLKLIKLAGFKSFVEPTRIEFSADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGEN 60 Query: 61 YADVTRIGS 69 DV GS Sbjct: 61 MTDVIFNGS 69 >gi|120609373|ref|YP_969051.1| hypothetical protein Aave_0676 [Acidovorax citrulli AAC00-1] gi|120587837|gb|ABM31277.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1] Length = 712 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L++ +RN+A+ +L+F +G+NG GKTN+ AI L R A Sbjct: 1 MHISKLSLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLLDDNMIRSA----- 55 Query: 65 TRIGSPSFFSTFARVEG 81 R+ S F R +G Sbjct: 56 YRLESTDFHRGLGRWQG 72 >gi|11498637|ref|NP_069865.1| chromosome segregation protein [Archaeoglobus fulgidus DSM 4304] gi|18201999|sp|O29230|RAD50_ARCFU RecName: Full=DNA double-strand break repair rad50 ATPase gi|2649562|gb|AAB90211.1| purine NTPase, putative [Archaeoglobus fulgidus DSM 4304] Length = 886 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--ADV 64 +K L I FR+++ ++ FD + G NG GK++ILEAI L G + A+ D+ Sbjct: 4 LKELQIKNFRSHSDSKIEFDTGINLIAGRNGAGKSSILEAI--LVAFYGLKPATLRKNDL 61 Query: 65 TRIGSPSF 72 R+ S + Sbjct: 62 VRVNSSGY 69 >gi|326385841|ref|ZP_08207469.1| ATP-dependent OLD family endonuclease [Novosphingobium nitrogenifigens DSM 19370] gi|326209678|gb|EGD60467.1| ATP-dependent OLD family endonuclease [Novosphingobium nitrogenifigens DSM 19370] Length = 255 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Query: 10 LNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 L + +NY S+R +A TI VG N GKT +L+A+ ++P +G +R Sbjct: 3 LKTAHIQNYRSIRDTGVFEIEAGKTILVGPNEAGKTAVLQALQQINPPKGIKR 55 >gi|212638792|ref|YP_002315312.1| DNA repair ATPase [Anoxybacillus flavithermus WK1] gi|212560272|gb|ACJ33327.1| ATPase involved in DNA repair [Anoxybacillus flavithermus WK1] Length = 576 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L F+ T+ G+ G GK+ I++AI L GRG A+ R G Sbjct: 5 LSIKNFAIIESLSLSFEKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRYG- 58 Query: 70 PSFFSTFARVEGM 82 T A +EG+ Sbjct: 59 ----ETKAEIEGL 67 >gi|312095128|ref|XP_003148257.1| hypothetical protein LOAG_12697 [Loa loa] gi|307756577|gb|EFO15811.1| hypothetical protein LOAG_12697 [Loa loa] Length = 417 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 4/107 (3%) Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS----VRCLQINDVVIRVVDELNK 118 D I SPS FS + EG+E L I L+ +R + + + +L + Sbjct: 297 DQISILSPSLFSMHDKGEGLEALTSIPGLLKVAGNRDYEEWLNFIMEASGTTDAIHKLKE 356 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 + WL P + G+ + F V IDP R+M FE L Sbjct: 357 EQELDWLPPGYKSMQRGIDGQPMYFTKENVTEIDPEMARKMELFENL 403 >gi|238029044|ref|YP_002913269.1| hypothetical protein bglu_4p0730 [Burkholderia glumae BGR1] gi|237880621|gb|ACR32949.1| Hypothetical protein bglu_4p0730 [Burkholderia glumae BGR1] Length = 767 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56 + I ++++ + +FR ++L D Q TI VG N GKT IL A+ FL+ F Sbjct: 9 SGSITLRYVELCKFRRLGKVQLDLDPQTTILVGANNSGKTAILTALRHFLAESSPF 64 >gi|56964224|ref|YP_175955.1| DNA repair protein RecN [Bacillus clausii KSM-K16] gi|56910467|dbj|BAD64994.1| DNA repair protein RecN [Bacillus clausii KSM-K16] Length = 565 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL + F+ T+ G+ G GK+ I++AI+ L GRG A+ R G Sbjct: 5 LSIKNFAIIRSLTVPFEKGLTVLTGETGAGKSIIIDAIALLLGGRG-----SAEFVRFGE 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102 A +EG+ + + L+ D V C Sbjct: 60 KR-----AEIEGLFAIGENHPALKKLDPIGVEC 87 >gi|206579854|ref|YP_002237036.1| OLD family TOPRIM nucleotidyl transferase/hydrolase domain protein [Klebsiella pneumoniae 342] gi|206568912|gb|ACI10688.1| OLD family TOPRIM nucleotidyl transferase/hydrolase domain protein [Klebsiella pneumoniae 342] Length = 583 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 10/83 (12%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA---DVTR 66 L IS FR+ + + T+ VG+N GK+N+++AI L+ RR Y DV R Sbjct: 6 LKISRFRSCDDVTVSLRPDLTVLVGENNGGKSNVVDAIRLLTLPLSGRRERYPEDEDVRR 65 Query: 67 IGS-PSFFSTFARVEG-MEGLAD 87 + PSF ++EG +GL+D Sbjct: 66 YSTVPSF-----QIEGAFQGLSD 83 >gi|320352797|ref|YP_004194136.1| Sigma 54 interacting domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121299|gb|ADW16845.1| Sigma 54 interacting domain protein [Desulfobulbus propionicus DSM 2032] Length = 575 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 13/131 (9%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHT---IFVGDNGVGKTNILEAISFLSPGRGFRRA 59 R ++ L + +L L AQ T + G+ G GK+ IL+AI+ L+ GRG Sbjct: 9 ERTMLQELRVHNLALIDALHLDLSAQKTGLIVLTGETGAGKSIILQAINLLTGGRGTASW 68 Query: 60 SYADVTRIGSPSFFS---------TFARVEGM-EGLADISIKLETRDDRSVRCLQINDVV 109 +D + G + F+ T + + EG I ++ TR+ RS + V Sbjct: 69 VRSDCDQAGIEAIFAIRPDHAELNTLLSEQALKEGTTCIVRRILTREGRSKVYVNDQPVT 128 Query: 110 IRVVDELNKHL 120 R+ EL L Sbjct: 129 TRLAGELTAGL 139 >gi|315604348|ref|ZP_07879414.1| SMC structural maintenance of chromosomes partitioning protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315314054|gb|EFU62105.1| SMC structural maintenance of chromosomes partitioning protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 1194 Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 25/174 (14%) Query: 7 IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K L + F+++AS L T VG NG GK+N+++A++++ R R A Sbjct: 3 LKNLTLRGFKSFASATTLALQPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQMA 62 Query: 63 DVTRIGSPSFFSTFAR------VEGMEGLADISIKLETRDDRSVRC----LQINDVVIRV 112 DV G+ S + R ++ +GL DI T R IN +R+ Sbjct: 63 DVIFAGT-SGRAALGRAQVDLTIDNTDGLLDIEYSEVTISRTLFRGGGSEYSINGTPVRL 121 Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158 +D + + + + +D I S ERR F++ + +HRRR Sbjct: 122 LDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVL--KHRRR 173 >gi|295396106|ref|ZP_06806289.1| ATP-dependent endonuclease [Brevibacterium mcbrellneri ATCC 49030] gi|294971047|gb|EFG46939.1| ATP-dependent endonuclease [Brevibacterium mcbrellneri ATCC 49030] Length = 83 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 16/84 (19%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRR----- 58 +K++ L I FR + +++F +T+ VG+N VGK+ + EA+ L P R RR Sbjct: 1 MKVRQLEIENFRGVRAGKVIF-VDNTLLVGENNVGKSTVCEALDLVLGPERTSRRPVVDE 59 Query: 59 ---------ASYADVTRIGSPSFF 73 S TRIG+ S Sbjct: 60 HDFHRSTEATSDGGTTRIGASSMI 83 >gi|148642180|ref|YP_001272693.1| purine NTPase involved in DNA repair, Rad50 [Methanobrevibacter smithii ATCC 35061] gi|148551197|gb|ABQ86325.1| purine NTPase involved in DNA repair, Rad50 [Methanobrevibacter smithii ATCC 35061] Length = 917 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 26/40 (65%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 L ++ F++Y + F T+ VG+NG GK+ ILEAISF Sbjct: 6 LTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF 45 >gi|261350818|ref|ZP_05976235.1| putative RecF/RecN/SMC N domain protein [Methanobrevibacter smithii DSM 2374] gi|288860436|gb|EFC92734.1| putative RecF/RecN/SMC N domain protein [Methanobrevibacter smithii DSM 2374] Length = 917 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 26/40 (65%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 L ++ F++Y + F T+ VG+NG GK+ ILEAISF Sbjct: 6 LTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF 45 >gi|222444642|ref|ZP_03607157.1| hypothetical protein METSMIALI_00254 [Methanobrevibacter smithii DSM 2375] gi|222434207|gb|EEE41372.1| hypothetical protein METSMIALI_00254 [Methanobrevibacter smithii DSM 2375] Length = 917 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 26/40 (65%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 L ++ F++Y + F T+ VG+NG GK+ ILEAISF Sbjct: 6 LTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF 45 >gi|298345307|ref|YP_003717994.1| SMC structural maintenance of chromosomes partitioning protein [Mobiluncus curtisii ATCC 43063] gi|298235368|gb|ADI66500.1| SMC structural maintenance of chromosomes partitioning protein [Mobiluncus curtisii ATCC 43063] Length = 1201 Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 38/242 (15%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62 +K L + F+++A ++ + + T VG NG GK+N+++A++++ +G R + + Sbjct: 3 LKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQMS 62 Query: 63 DVTRIGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCL--------QINDVVIRV 112 DV G+ + + R E + +D ++ +E + R + IN +R+ Sbjct: 63 DVIFAGTKT-KAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVRL 121 Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR--RRMIDF 162 +D + + + + +DRI S +ERR F++ + R R R + Sbjct: 122 LDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHRQRKDRALKKL 181 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR------VEMINALSSLIMEYV 216 E L +R+ + + ++ LG + AR E+ +A + LI + V Sbjct: 182 ENLAVNLSRV-------QDLTNEVAKRLGPLGKQAEAARKAARVQAELADATARLIADAV 234 Query: 217 QK 218 + Sbjct: 235 AQ 236 >gi|119871816|ref|YP_929823.1| SMC domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673224|gb|ABL87480.1| SMC domain protein [Pyrobaculum islandicum DSM 4184] Length = 702 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 S GEQ ++ + + +A AR + G AP ++ DE + HLDE+ R + ++ D+ S Sbjct: 626 SLGEQNLLAISLRVALARAL---LGGAPFMMFDEPTEHLDEEHRRKIVELIRDLTS 678 >gi|315656359|ref|ZP_07909248.1| chromosome segregation protein SMC [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492918|gb|EFU82520.1| chromosome segregation protein SMC [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 1201 Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 38/242 (15%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62 +K L + F+++A ++ + + T VG NG GK+N+++A++++ +G R + + Sbjct: 3 LKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQMS 62 Query: 63 DVTRIGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCL--------QINDVVIRV 112 DV G+ + + R E + +D ++ +E + R + IN +R+ Sbjct: 63 DVIFAGTKT-KAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVRL 121 Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR--RRMIDF 162 +D + + + + +DRI S +ERR F++ + R R R + Sbjct: 122 LDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHRQRKDRALKKL 181 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR------VEMINALSSLIMEYV 216 E L +R+ + + ++ LG + AR E+ +A + LI + V Sbjct: 182 ENLAVNLSRV-------QDLTNEVAKRLGPLGKQAEAARKAARVQAELADATARLIADAV 234 Query: 217 QK 218 + Sbjct: 235 AQ 236 >gi|304390864|ref|ZP_07372816.1| SMC structural maintenance of chromosomes partitioning protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325747|gb|EFL92993.1| SMC structural maintenance of chromosomes partitioning protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 1201 Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 38/242 (15%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62 +K L + F+++A ++ + + T VG NG GK+N+++A++++ +G R + + Sbjct: 3 LKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQMS 62 Query: 63 DVTRIGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCL--------QINDVVIRV 112 DV G+ + + R E + +D ++ +E + R + IN +R+ Sbjct: 63 DVIFAGTKT-KAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVRL 121 Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR--RRMIDF 162 +D + + + + +DRI S +ERR F++ + R R R + Sbjct: 122 LDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHRQRKDRALKKL 181 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR------VEMINALSSLIMEYV 216 E L +R+ + + ++ LG + AR E+ +A + LI + V Sbjct: 182 ENLAVNLSRV-------QDLTNEVAKRLGPLGKQAEAARKAARVQAELADATARLIADAV 234 Query: 217 QK 218 + Sbjct: 235 AQ 236 >gi|260773571|ref|ZP_05882487.1| hypothetical protein VIB_002045 [Vibrio metschnikovii CIP 69.14] gi|260612710|gb|EEX37913.1| hypothetical protein VIB_002045 [Vibrio metschnikovii CIP 69.14] Length = 553 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 16/77 (20%) Query: 5 IKIKFLNI-SEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFLSPGRGFRRA-- 59 +K+ L+I S F+N ++ + FD H T+ VG NG GK+N+LEA+ + FR Sbjct: 1 MKVDKLHIRSRFKNLENVTVDFDEDHLMTVVVGRNGSGKSNVLEALVAI-----FRNLDL 55 Query: 60 ------SYADVTRIGSP 70 SY V R+G P Sbjct: 56 GEVPPFSYELVYRLGEP 72 >gi|295692560|ref|YP_003601170.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus ST1] gi|295030666|emb|CBL50145.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus ST1] Length = 212 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 17/119 (14%) Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 ++ RK+D ++ ++ DL D+ DK IT G GE++ V LI N Sbjct: 101 YEIRKVDVNDKQIADLLNQVDLSADFLDKKITALSG--GEKQRV---------ALIRNII 149 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNETAKFMRI 367 ILLLDE++ LD ++ + ++ D+ G I D+S D E + +R+ Sbjct: 150 FLPEILLLDEVTTGLDNQSKDIVHNLIKDVSEKGVTIIQVTHDQSEID---EASNILRV 205 >gi|83719658|ref|YP_443234.1| hypothetical protein BTH_I2720 [Burkholderia thailandensis E264] gi|257139468|ref|ZP_05587730.1| hypothetical protein BthaA_09741 [Burkholderia thailandensis E264] gi|83653483|gb|ABC37546.1| conserved hypothetical protein [Burkholderia thailandensis E264] Length = 784 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 22/134 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY-- 61 + I+F+ I+ FR S R+ + T+FVG N GKT+ + A+ FL+P RR + Sbjct: 1 MHIEFVEIANFRKLLSARVDLSLKTTLFVGANNSGKTSAMLALRRFLTP----RRCPFDI 56 Query: 62 ADVTRIGSPSFF---STFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVV-DEL 116 D T P+ T+ + +EG+A D+++ D V+ L D+ ++V DE+ Sbjct: 57 HDFTLCHLPALVDIGETWLQAN-LEGVATDLTL------DPWVQALPALDLWLQVKEDEV 109 Query: 117 NKHLRISWLVPSMD 130 + R+ LVP MD Sbjct: 110 H---RVRDLVPLMD 120 >gi|308456383|ref|XP_003090636.1| hypothetical protein CRE_25955 [Caenorhabditis remanei] gi|308262100|gb|EFP06053.1| hypothetical protein CRE_25955 [Caenorhabditis remanei] Length = 386 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 6/65 (9%) Query: 10 LNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYADVT 65 L I F++Y L+ ++ T +G NG GK+N+++AISF+ PG R Y D+ Sbjct: 19 LEIENFKSYKGFHLIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPG-SLRVKKYTDLI 77 Query: 66 RIGSP 70 G+P Sbjct: 78 H-GAP 81 >gi|91776973|ref|YP_546729.1| hypothetical protein Mfla_2624 [Methylobacillus flagellatus KT] gi|91710960|gb|ABE50888.1| conserved hypothetical protein [Methylobacillus flagellatus KT] Length = 505 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63 +KIK + ++ FR+Y+S V + VG N +GK+ ILEA+ F + G+G + D Sbjct: 1 MKIKAVTVNRFRSYSSPVTVQVDDLLVLVGRNDIGKSTILEALDIFFNEGKGCVKIDKDD 60 Query: 64 VTR 66 + + Sbjct: 61 INK 63 >gi|85858660|ref|YP_460862.1| ATP-dependent endonuclease family protein [Syntrophus aciditrophicus SB] gi|85721751|gb|ABC76694.1| ATP-dependent endonuclease family protein [Syntrophus aciditrophicus SB] Length = 636 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63 ++I L I FR + ++ ++H++ +GDN GKT ILEAI L P R R D Sbjct: 1 MQISRLIIKNFRGIQNASIIL-SKHSVLIGDNNTGKTTILEAIDLALGPDR-LNRVPPVD 58 Query: 64 V 64 V Sbjct: 59 V 59 >gi|304373610|ref|YP_003858355.1| gp46 recombination endonuclease subunit [Enterobacteria phage RB16] gi|299829566|gb|ADJ55359.1| gp46 recombination endonuclease subunit [Enterobacteria phage RB16] Length = 565 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Query: 6 KIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 KIK+ NI N + L FD A+ T+ G NG GK+ ++EA+++ G+ FR Sbjct: 7 KIKYQNILSVGN-TPIELEFDTAKKTLITGKNGGGKSTLIEALTYALFGKSFR 58 >gi|227877206|ref|ZP_03995280.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus crispatus JV-V01] gi|256842760|ref|ZP_05548248.1| ABC transporter ATPase [Lactobacillus crispatus 125-2-CHN] gi|256848930|ref|ZP_05554364.1| ABC transporter ATPase component [Lactobacillus crispatus MV-1A-US] gi|262045727|ref|ZP_06018691.1| ABC transporter ATPase component [Lactobacillus crispatus MV-3A-US] gi|293380205|ref|ZP_06626287.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus 214-1] gi|312977720|ref|ZP_07789467.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus CTV-05] gi|227863260|gb|EEJ70705.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus crispatus JV-V01] gi|256614180|gb|EEU19381.1| ABC transporter ATPase [Lactobacillus crispatus 125-2-CHN] gi|256714469|gb|EEU29456.1| ABC transporter ATPase component [Lactobacillus crispatus MV-1A-US] gi|260573686|gb|EEX30242.1| ABC transporter ATPase component [Lactobacillus crispatus MV-3A-US] gi|290923249|gb|EFE00170.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus 214-1] gi|310895459|gb|EFQ44526.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus CTV-05] Length = 212 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 17/119 (14%) Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 ++ RK+D ++ ++ DL D+ DK IT G GE++ V LI N Sbjct: 101 YEIRKVDVNDKQIADLLNQVDLSADFLDKKITALSG--GEKQRV---------ALIRNII 149 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNETAKFMRI 367 ILLLDE++ LD ++ + ++ D+ G I D+S D E + +R+ Sbjct: 150 FLPKILLLDEVTTGLDNQSKDIVHNLIKDVSEKGVTIIQVTHDQSEID---EASNILRV 205 >gi|241204311|ref|YP_002975407.1| SMC domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858201|gb|ACS55868.1| SMC domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 818 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 27/49 (55%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 I+I ++I EFR L L Q+ G NG GK+ I++AI F+ G Sbjct: 2 IRIDKIHIKEFRGIRELTLTLKGQNFAACGPNGTGKSGIVDAIEFVLTG 50 >gi|66391506|ref|YP_239031.1| gp46 recombination endonuclease subunit [Enterobacteria phage RB43] gi|62288594|gb|AAX78577.1| gp46 recombination endonuclease subunit [Enterobacteria phage RB43] Length = 567 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Query: 6 KIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 KIK+ NI N + L FD A+ T+ G NG GK+ ++EA+++ G+ FR Sbjct: 7 KIKYQNILSVGN-TPIELEFDTAKKTLITGKNGGGKSTLIEALTYALFGKSFR 58 >gi|220905820|ref|YP_002481131.1| SMC domain-containing protein [Cyanothece sp. PCC 7425] gi|219862431|gb|ACL42770.1| SMC domain protein [Cyanothece sp. PCC 7425] Length = 430 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 5 IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50 +++K L + FR + +L L F + + T+F G NGVGK++IL+ ++ L Sbjct: 1 MRVKSLKMQNFRGFENLTLDFSETEPTVFFGINGVGKSSILDCLAIL 47 >gi|217968007|ref|YP_002353513.1| SMC domain protein [Dictyoglomus turgidum DSM 6724] gi|217337106|gb|ACK42899.1| SMC domain protein [Dictyoglomus turgidum DSM 6724] Length = 978 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYAD 63 IK+ L +S F+ Y + R+ F Q I + G N GK+ I EAI+F G+ S + Sbjct: 2 IKLVSLKLSNFKQYQNARIEFPEQGKILIKGKNEAGKSTIFEAIAFALFGKPVYVGSKPN 61 Query: 64 VTRIGS 69 + R + Sbjct: 62 LIRFNA 67 >gi|20808433|ref|NP_623604.1| ATPase involved in DNA repair [Thermoanaerobacter tengcongensis MB4] gi|20517049|gb|AAM25208.1| ATPase involved in DNA repair [Thermoanaerobacter tengcongensis MB4] Length = 549 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 IK + + F+++ + + F+ ++T+ GDNG GKT+I EAI++ G Sbjct: 3 IKSITLKNFKSHKNTIINFNDKNTVIYGDNGTGKTSIGEAIAWCLTG 49 >gi|257094930|ref|YP_003168571.1| SMC domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047454|gb|ACV36642.1| SMC domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 489 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 29/44 (65%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 +++K + ++ FR + S + + ++FVG+NG GKT +L+ I+ Sbjct: 14 MRLKKITLNNFRCFESFEVTLHPRLSVFVGENGAGKTAVLDGIA 57 >gi|160901531|ref|YP_001567112.1| ABC transporter related [Petrotoga mobilis SJ95] gi|160359175|gb|ABX30789.1| ABC transporter related [Petrotoga mobilis SJ95] Length = 256 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 13/91 (14%) Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 +++Y +K + G GE++ V++ AR I+ T PILLLDE S+HLD + Sbjct: 128 LINYKNKPFSSMSG--GEKQKVMI------ARAIAQRT---PILLLDEFSSHLDPGYTQS 176 Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 L ++V ++ ++ T +VF +N A F Sbjct: 177 LLKLVKEMVTK--EKKTVLAVFHDVNNAALF 205 >gi|315655727|ref|ZP_07908625.1| chromosome segregation protein SMC [Mobiluncus curtisii ATCC 51333] gi|315489791|gb|EFU79418.1| chromosome segregation protein SMC [Mobiluncus curtisii ATCC 51333] Length = 1201 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 38/242 (15%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62 +K L + F+++A ++ + + T VG NG GK+N+++A++++ +G R + + Sbjct: 3 LKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQMS 62 Query: 63 DVTRIGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCL--------QINDVVIRV 112 DV G+ + + R E + +D ++ +E + R + IN +R+ Sbjct: 63 DVIFAGTKT-KAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVRL 121 Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR--RRMIDF 162 +D + + + + +DRI S +ERR F++ + R R R + Sbjct: 122 LDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHRQRKDRALKKL 181 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR------VEMINALSSLIMEYV 216 E L +R+ + + ++ LG + AR E+ +A + LI + V Sbjct: 182 ENLAVNLSRV-------QDLTNEVAKRLGPLGKQAEAARKAARVQAELADATARLIADAV 234 Query: 217 QK 218 + Sbjct: 235 AQ 236 >gi|27817689|emb|CAD61116.1| hypothetical protein [Cupriavidus oxalaticus] Length = 712 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +RN+A+ +L+F +G+NG GKTN+ AI L R A D Sbjct: 1 MHISKLGLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLLDDNMIRSAYRLDS 60 Query: 65 T 65 T Sbjct: 61 T 61 >gi|282889710|ref|ZP_06298249.1| hypothetical protein pah_c004o057 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500284|gb|EFB42564.1| hypothetical protein pah_c004o057 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 107 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 TLIGPH+ DL + DK S G+Q+ + + LA + T P++L+D+ Sbjct: 4 TLIGPHKDDLNLCLDDKEARY-FASEGQQRSFVAALKLAEWSSLKAVTEENPLMLIDDAG 62 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGT 350 D ++ L + + + Q+F+T T Sbjct: 63 MSWDAFRKAKLLKYIEGL-HQVFLTTT 88 >gi|331265720|ref|YP_004325350.1| ATPase involved in DNA repair, putative [Streptococcus oralis Uo5] gi|326682392|emb|CBZ00009.1| ATPase involved in DNA repair, putative [Streptococcus oralis Uo5] Length = 880 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%) Query: 4 RIKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +I+ KF I F+N R++ F T+FVG NG GKT I +A+ GR RR + Sbjct: 2 KIQKKF--IKNFKNIKGTRIIDFQENVTLFVGPNGFGKTTIFDALELSLTGR-IRRIEES 58 Query: 63 DVTRIGSPSFFSTF 76 D + G SF + + Sbjct: 59 DYSD-GRSSFSTPY 71 >gi|308460454|ref|XP_003092531.1| CRE-HIM-1 protein [Caenorhabditis remanei] gi|308253107|gb|EFO97059.1| CRE-HIM-1 protein [Caenorhabditis remanei] Length = 1203 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 6/65 (9%) Query: 10 LNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYADVT 65 L I F++Y L+ ++ T +G NG GK+N+++AISF+ PG R Y D+ Sbjct: 19 LEIENFKSYKGFHLIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPG-SLRVKKYTDLI 77 Query: 66 RIGSP 70 G+P Sbjct: 78 H-GAP 81 >gi|288960413|ref|YP_003450753.1| ABC transporter ATP-binding protein [Azospirillum sp. B510] gi|288912721|dbj|BAI74209.1| ABC transporter ATP-binding protein [Azospirillum sp. B510] Length = 251 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 17/156 (10%) Query: 16 RNYASLRLVFDAQHTIF-------VGDNGVGKTNILEAIS-FLSPGRGFRRASYADVT-- 65 +++ +L + D T+ +G NG GKT ++ IS L P RG + DVT Sbjct: 13 KSFGALAVTSDVSLTVLPGEIHAIIGPNGAGKTTLIHQISGTLRPSRGTIHFAGRDVTAL 72 Query: 66 ------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 R+G F + V G L ++++ ++ R S R L+ + +E Sbjct: 73 PFERRARLGLARSFQITSIVPGFTALENVALAVQARSGSSFRFLRPVAGEAALNEEARAA 132 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLD-RMVFAIDPR 154 L I L +R + LS +R L+ + A++PR Sbjct: 133 LDIVGLGRVAERGAAALSHGEKRQLELAIAIAMNPR 168 >gi|322418046|ref|YP_004197269.1| SMC domain-containing protein [Geobacter sp. M18] gi|320124433|gb|ADW11993.1| SMC domain protein [Geobacter sp. M18] Length = 637 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 +KI+ + I FR YA + FD +T VG NG GK+ IL A++ Sbjct: 1 MKIESVRIKNFRGYADETIFFD-NYTCLVGPNGAGKSTILSALN 43 >gi|53720442|ref|YP_109428.1| putative RecN DNA repair protein [Burkholderia pseudomallei K96243] gi|167817270|ref|ZP_02448950.1| putative RecN DNA repair protein [Burkholderia pseudomallei 91] gi|52210856|emb|CAH36844.1| putative RecN DNA repair protein [Burkholderia pseudomallei K96243] Length = 549 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F A+L L FD+ T+F G+ G GK+ +++A++ R + A V R Sbjct: 2 LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114 GS G ADIS + T DR R L +D V+ RVVD Sbjct: 57 TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96 >gi|254180752|ref|ZP_04887350.1| DNA repair protein RecN [Burkholderia pseudomallei 1655] gi|184211291|gb|EDU08334.1| DNA repair protein RecN [Burkholderia pseudomallei 1655] Length = 549 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F A+L L FD+ T+F G+ G GK+ +++A++ R + A V R Sbjct: 2 LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114 GS G ADIS + T DR R L +D V+ RVVD Sbjct: 57 TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96 >gi|53726219|ref|YP_103892.1| DNA repair protein RecN [Burkholderia mallei ATCC 23344] gi|67642158|ref|ZP_00440919.1| DNA repair protein RecN [Burkholderia mallei GB8 horse 4] gi|121600457|ref|YP_991841.1| DNA repair protein RecN [Burkholderia mallei SAVP1] gi|124383475|ref|YP_001027092.1| DNA repair protein RecN [Burkholderia mallei NCTC 10229] gi|126439090|ref|YP_001060297.1| DNA repair protein RecN [Burkholderia pseudomallei 668] gi|126449391|ref|YP_001081743.1| DNA repair protein RecN [Burkholderia mallei NCTC 10247] gi|126455415|ref|YP_001067556.1| DNA repair protein RecN [Burkholderia pseudomallei 1106a] gi|134280596|ref|ZP_01767307.1| DNA repair protein RecN [Burkholderia pseudomallei 305] gi|167721081|ref|ZP_02404317.1| DNA repair protein RecN [Burkholderia pseudomallei DM98] gi|167847168|ref|ZP_02472676.1| DNA repair protein RecN [Burkholderia pseudomallei B7210] gi|167895751|ref|ZP_02483153.1| DNA repair protein RecN [Burkholderia pseudomallei 7894] gi|167904142|ref|ZP_02491347.1| DNA repair protein RecN [Burkholderia pseudomallei NCTC 13177] gi|167920355|ref|ZP_02507446.1| DNA repair protein RecN [Burkholderia pseudomallei BCC215] gi|217421075|ref|ZP_03452580.1| DNA repair protein RecN [Burkholderia pseudomallei 576] gi|242314472|ref|ZP_04813488.1| DNA repair protein RecN [Burkholderia pseudomallei 1106b] gi|254178750|ref|ZP_04885404.1| DNA repair protein RecN [Burkholderia mallei ATCC 10399] gi|254202603|ref|ZP_04908966.1| DNA repair protein RecN [Burkholderia mallei FMH] gi|254207941|ref|ZP_04914291.1| DNA repair protein RecN [Burkholderia mallei JHU] gi|254355919|ref|ZP_04972197.1| DNA repair protein RecN [Burkholderia mallei 2002721280] gi|52429642|gb|AAU50235.1| DNA repair protein RecN [Burkholderia mallei ATCC 23344] gi|121229267|gb|ABM51785.1| DNA repair protein RecN [Burkholderia mallei SAVP1] gi|124291495|gb|ABN00764.1| DNA repair protein RecN [Burkholderia mallei NCTC 10229] gi|126218583|gb|ABN82089.1| DNA repair protein RecN [Burkholderia pseudomallei 668] gi|126229057|gb|ABN92597.1| DNA repair protein RecN [Burkholderia pseudomallei 1106a] gi|126242261|gb|ABO05354.1| DNA repair protein RecN [Burkholderia mallei NCTC 10247] gi|134248603|gb|EBA48686.1| DNA repair protein RecN [Burkholderia pseudomallei 305] gi|147746850|gb|EDK53927.1| DNA repair protein RecN [Burkholderia mallei FMH] gi|147751835|gb|EDK58902.1| DNA repair protein RecN [Burkholderia mallei JHU] gi|148024894|gb|EDK83072.1| DNA repair protein RecN [Burkholderia mallei 2002721280] gi|160694664|gb|EDP84672.1| DNA repair protein RecN [Burkholderia mallei ATCC 10399] gi|217396487|gb|EEC36504.1| DNA repair protein RecN [Burkholderia pseudomallei 576] gi|238523252|gb|EEP86692.1| DNA repair protein RecN [Burkholderia mallei GB8 horse 4] gi|242137711|gb|EES24113.1| DNA repair protein RecN [Burkholderia pseudomallei 1106b] Length = 549 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F A+L L FD+ T+F G+ G GK+ +++A++ R + A V R Sbjct: 2 LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114 GS G ADIS + T DR R L +D V+ RVVD Sbjct: 57 TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96 >gi|312904547|ref|ZP_07763705.1| DNA repair protein RecN [Enterococcus faecalis TX0635] gi|310632060|gb|EFQ15343.1| DNA repair protein RecN [Enterococcus faecalis TX0635] gi|315577399|gb|EFU89590.1| DNA repair protein RecN [Enterococcus faecalis TX0630] Length = 557 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|307289413|ref|ZP_07569367.1| DNA repair protein RecN [Enterococcus faecalis TX0109] gi|306499668|gb|EFM69031.1| DNA repair protein RecN [Enterococcus faecalis TX0109] gi|315165150|gb|EFU09167.1| DNA repair protein RecN [Enterococcus faecalis TX1302] Length = 557 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|167580679|ref|ZP_02373553.1| DNA repair protein RecN [Burkholderia thailandensis TXDOH] Length = 549 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F A+L L FD+ T+F G+ G GK+ +++A++ R + A V R Sbjct: 2 LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114 GS G ADIS + T DR R L +D V+ RVVD Sbjct: 57 TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96 >gi|157737948|ref|YP_001490632.1| hypothetical protein Abu_1715 [Arcobacter butzleri RM4018] gi|157699802|gb|ABV67962.1| hypothetical protein Abu_1715 [Arcobacter butzleri RM4018] Length = 590 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAIS 48 +K+K L ++ F+N + F++ T+ +G+NG GK+NILEAIS Sbjct: 1 MKLKRLWVNGFKNLKDFEINFESNEGITLLIGNNGSGKSNILEAIS 46 >gi|29375566|ref|NP_814720.1| DNA repair protein RecN [Enterococcus faecalis V583] gi|227555094|ref|ZP_03985141.1| DNA repair protein RecN [Enterococcus faecalis HH22] gi|307275468|ref|ZP_07556610.1| DNA repair protein RecN [Enterococcus faecalis TX2134] gi|29343027|gb|AAO80790.1| DNA repair protein RecN [Enterococcus faecalis V583] gi|227175762|gb|EEI56734.1| DNA repair protein RecN [Enterococcus faecalis HH22] gi|306507856|gb|EFM76984.1| DNA repair protein RecN [Enterococcus faecalis TX2134] gi|315168049|gb|EFU12066.1| DNA repair protein RecN [Enterococcus faecalis TX1341] gi|315574271|gb|EFU86462.1| DNA repair protein RecN [Enterococcus faecalis TX0309B] gi|315581574|gb|EFU93765.1| DNA repair protein RecN [Enterococcus faecalis TX0309A] Length = 557 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|315026961|gb|EFT38893.1| DNA repair protein RecN [Enterococcus faecalis TX2137] Length = 557 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|303230837|ref|ZP_07317584.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] gi|302514597|gb|EFL56592.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] Length = 538 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 7/80 (8%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KIK LN +++ A + + IFVG+N GK++ILEA+S + G R + + + Sbjct: 5 KIKILN---YKSIADTIINLNKDMNIFVGENDAGKSSILEALSAVLMG----RINGSGIV 57 Query: 66 RIGSPSFFSTFARVEGMEGL 85 + PS F++ AR +E + Sbjct: 58 QNLRPSLFNSNARKNYLESI 77 >gi|257086343|ref|ZP_05580704.1| DNA repair protein RecN [Enterococcus faecalis D6] gi|256994373|gb|EEU81675.1| DNA repair protein RecN [Enterococcus faecalis D6] Length = 560 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 5 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53 >gi|256617907|ref|ZP_05474753.1| DNA repair protein RecN [Enterococcus faecalis ATCC 4200] gi|256597434|gb|EEU16610.1| DNA repair protein RecN [Enterococcus faecalis ATCC 4200] Length = 560 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 5 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53 >gi|307268065|ref|ZP_07549453.1| DNA repair protein RecN [Enterococcus faecalis TX4248] gi|312900455|ref|ZP_07759762.1| DNA repair protein RecN [Enterococcus faecalis TX0470] gi|306515706|gb|EFM84233.1| DNA repair protein RecN [Enterococcus faecalis TX4248] gi|311292431|gb|EFQ70987.1| DNA repair protein RecN [Enterococcus faecalis TX0470] gi|315031729|gb|EFT43661.1| DNA repair protein RecN [Enterococcus faecalis TX0017] gi|315034214|gb|EFT46146.1| DNA repair protein RecN [Enterococcus faecalis TX0027] gi|315147936|gb|EFT91952.1| DNA repair protein RecN [Enterococcus faecalis TX4244] gi|323480224|gb|ADX79663.1| DNA repair protein RecN [Enterococcus faecalis 62] gi|329574363|gb|EGG55935.1| DNA repair protein RecN [Enterococcus faecalis TX1467] Length = 557 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|255971438|ref|ZP_05422024.1| DNA repair protein RecN [Enterococcus faecalis T1] gi|256960166|ref|ZP_05564337.1| DNA repair protein RecN [Enterococcus faecalis Merz96] gi|256962591|ref|ZP_05566762.1| DNA repair protein RecN [Enterococcus faecalis HIP11704] gi|257083895|ref|ZP_05578256.1| DNA repair protein RecN [Enterococcus faecalis Fly1] gi|257421233|ref|ZP_05598223.1| DNA repair protein recN [Enterococcus faecalis X98] gi|255962456|gb|EET94932.1| DNA repair protein RecN [Enterococcus faecalis T1] gi|256950662|gb|EEU67294.1| DNA repair protein RecN [Enterococcus faecalis Merz96] gi|256953087|gb|EEU69719.1| DNA repair protein RecN [Enterococcus faecalis HIP11704] gi|256991925|gb|EEU79227.1| DNA repair protein RecN [Enterococcus faecalis Fly1] gi|257163057|gb|EEU93017.1| DNA repair protein recN [Enterococcus faecalis X98] Length = 560 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 5 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53 >gi|227517907|ref|ZP_03947956.1| DNA repair protein RecN [Enterococcus faecalis TX0104] gi|227074661|gb|EEI12624.1| DNA repair protein RecN [Enterococcus faecalis TX0104] Length = 557 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|226226181|ref|YP_002760287.1| exonuclease [Gemmatimonas aurantiaca T-27] gi|226089372|dbj|BAH37817.1| exonuclease [Gemmatimonas aurantiaca T-27] Length = 800 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRG----F 56 +++ L++ FR +A R+ F T +G NG GK+ ILEAI++ S RG Sbjct: 1 MRLHSLHLVNFRQHADTRIDFALGLTGIIGPNGSGKSTILEAIAWSLYGNSAARGNKDSI 60 Query: 57 RRASYADV 64 RR S DV Sbjct: 61 RRLSVEDV 68 >gi|295113837|emb|CBL32474.1| DNA replication and repair protein RecN [Enterococcus sp. 7L76] Length = 557 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|294780574|ref|ZP_06745937.1| DNA repair protein RecN [Enterococcus faecalis PC1.1] gi|294452401|gb|EFG20840.1| DNA repair protein RecN [Enterococcus faecalis PC1.1] Length = 557 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|257415602|ref|ZP_05592596.1| DNA repair protein RecN [Enterococcus faecalis AR01/DG] gi|257157430|gb|EEU87390.1| DNA repair protein RecN [Enterococcus faecalis ARO1/DG] Length = 560 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 5 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53 >gi|256852637|ref|ZP_05558008.1| DNA repair protein RecN [Enterococcus faecalis T8] gi|256711982|gb|EEU27019.1| DNA repair protein RecN [Enterococcus faecalis T8] Length = 560 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 5 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53 >gi|114775605|ref|ZP_01451173.1| hypothetical protein SPV1_04733 [Mariprofundus ferrooxydans PV-1] gi|114553716|gb|EAU56097.1| hypothetical protein SPV1_04733 [Mariprofundus ferrooxydans PV-1] Length = 637 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59 ++++ L I FR S ++ F HT+ VG N +GK+ + EA+ L P R FRR Sbjct: 1 MRVRRLTIENFRGVRSGQVDFRG-HTLLVGGNNIGKSTVCEALDLVLGPERLFRRP 55 >gi|327534571|gb|AEA93405.1| DNA repair protein RecN [Enterococcus faecalis OG1RF] Length = 557 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|315157620|gb|EFU01637.1| DNA repair protein RecN [Enterococcus faecalis TX0312] Length = 557 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|315149508|gb|EFT93524.1| DNA repair protein RecN [Enterococcus faecalis TX0012] Length = 557 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|307278964|ref|ZP_07560023.1| DNA repair protein RecN [Enterococcus faecalis TX0860] gi|306504351|gb|EFM73562.1| DNA repair protein RecN [Enterococcus faecalis TX0860] Length = 557 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|256957076|ref|ZP_05561247.1| DNA repair protein RecN [Enterococcus faecalis DS5] gi|257077872|ref|ZP_05572233.1| DNA repair protein RecN [Enterococcus faecalis JH1] gi|256947572|gb|EEU64204.1| DNA repair protein RecN [Enterococcus faecalis DS5] gi|256985902|gb|EEU73204.1| DNA repair protein RecN [Enterococcus faecalis JH1] Length = 560 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 5 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53 >gi|255974053|ref|ZP_05424639.1| DNA repair protein RecN [Enterococcus faecalis T2] gi|255966925|gb|EET97547.1| DNA repair protein RecN [Enterococcus faecalis T2] Length = 560 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 5 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53 >gi|76808604|ref|YP_334700.1| DNA repair protein RecN [Burkholderia pseudomallei 1710b] gi|167825680|ref|ZP_02457151.1| DNA repair protein RecN [Burkholderia pseudomallei 9] gi|167912401|ref|ZP_02499492.1| DNA repair protein RecN [Burkholderia pseudomallei 112] gi|226194310|ref|ZP_03789909.1| DNA repair protein RecN [Burkholderia pseudomallei Pakistan 9] gi|254191587|ref|ZP_04898090.1| DNA repair protein RecN [Burkholderia pseudomallei Pasteur 52237] gi|254260346|ref|ZP_04951400.1| DNA repair protein RecN [Burkholderia pseudomallei 1710a] gi|76578057|gb|ABA47532.1| DNA repair protein RecN [Burkholderia pseudomallei 1710b] gi|157939258|gb|EDO94928.1| DNA repair protein RecN [Burkholderia pseudomallei Pasteur 52237] gi|225933775|gb|EEH29763.1| DNA repair protein RecN [Burkholderia pseudomallei Pakistan 9] gi|254219035|gb|EET08419.1| DNA repair protein RecN [Burkholderia pseudomallei 1710a] Length = 549 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F A+L L FD+ T+F G+ G GK+ +++A++ R + A V R Sbjct: 2 LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114 GS G ADIS + T DR R L +D V+ RVVD Sbjct: 57 TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96 >gi|257418575|ref|ZP_05595569.1| DNA repair protein recN [Enterococcus faecalis T11] gi|257160403|gb|EEU90363.1| DNA repair protein recN [Enterococcus faecalis T11] Length = 560 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 5 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53 >gi|229546831|ref|ZP_04435556.1| DNA repair protein RecN [Enterococcus faecalis TX1322] gi|307290053|ref|ZP_07569977.1| DNA repair protein RecN [Enterococcus faecalis TX0411] gi|229307996|gb|EEN73983.1| DNA repair protein RecN [Enterococcus faecalis TX1322] gi|306498895|gb|EFM68389.1| DNA repair protein RecN [Enterococcus faecalis TX0411] gi|315029674|gb|EFT41606.1| DNA repair protein RecN [Enterococcus faecalis TX4000] Length = 557 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|229548925|ref|ZP_04437650.1| DNA repair protein RecN [Enterococcus faecalis ATCC 29200] gi|293382534|ref|ZP_06628468.1| DNA repair protein RecN [Enterococcus faecalis R712] gi|293387866|ref|ZP_06632405.1| DNA repair protein RecN [Enterococcus faecalis S613] gi|312906863|ref|ZP_07765860.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 512] gi|312952743|ref|ZP_07771605.1| DNA repair protein RecN [Enterococcus faecalis TX0102] gi|312978882|ref|ZP_07790608.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 516] gi|229305946|gb|EEN71942.1| DNA repair protein RecN [Enterococcus faecalis ATCC 29200] gi|291080082|gb|EFE17446.1| DNA repair protein RecN [Enterococcus faecalis R712] gi|291082713|gb|EFE19676.1| DNA repair protein RecN [Enterococcus faecalis S613] gi|310627117|gb|EFQ10400.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 512] gi|310629259|gb|EFQ12542.1| DNA repair protein RecN [Enterococcus faecalis TX0102] gi|311288319|gb|EFQ66875.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 516] gi|315153061|gb|EFT97077.1| DNA repair protein RecN [Enterococcus faecalis TX0031] gi|315156834|gb|EFU00851.1| DNA repair protein RecN [Enterococcus faecalis TX0043] gi|315171922|gb|EFU15939.1| DNA repair protein RecN [Enterococcus faecalis TX1342] gi|315173301|gb|EFU17318.1| DNA repair protein RecN [Enterococcus faecalis TX1346] Length = 557 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|300859955|ref|ZP_07106043.1| DNA repair protein RecN [Enterococcus faecalis TUSoD Ef11] gi|300850773|gb|EFK78522.1| DNA repair protein RecN [Enterococcus faecalis TUSoD Ef11] gi|315144370|gb|EFT88386.1| DNA repair protein RecN [Enterococcus faecalis TX2141] gi|315162950|gb|EFU06967.1| DNA repair protein RecN [Enterococcus faecalis TX0645] Length = 557 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|257089393|ref|ZP_05583754.1| DNA repair protein recN [Enterococcus faecalis CH188] gi|256998205|gb|EEU84725.1| DNA repair protein recN [Enterococcus faecalis CH188] Length = 560 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 5 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53 >gi|256761742|ref|ZP_05502322.1| DNA repair protein RecN [Enterococcus faecalis T3] gi|256682993|gb|EEU22688.1| DNA repair protein RecN [Enterococcus faecalis T3] Length = 560 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 5 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53 >gi|288560428|ref|YP_003423914.1| hypothetical protein mru_1172 [Methanobrevibacter ruminantium M1] gi|288543138|gb|ADC47022.1| hypothetical protein mru_1172 [Methanobrevibacter ruminantium M1] Length = 117 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 M + IK L I FR L+ F+ + + G NG GK++I +A +L G+ Sbjct: 1 MGQKFNIKELEIRSFRGIKDLKYDFEGKSLVLCGPNGCGKSSITQAFEYLFTGQ 54 >gi|257081237|ref|ZP_05575598.1| DNA repair protein RecN [Enterococcus faecalis E1Sol] gi|256989267|gb|EEU76569.1| DNA repair protein RecN [Enterococcus faecalis E1Sol] Length = 560 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 5 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53 >gi|83720672|ref|YP_441847.1| DNA repair protein RecN [Burkholderia thailandensis E264] gi|167618784|ref|ZP_02387415.1| DNA repair protein RecN [Burkholderia thailandensis Bt4] gi|257138016|ref|ZP_05586278.1| DNA repair protein RecN [Burkholderia thailandensis E264] gi|83654497|gb|ABC38560.1| DNA repair protein RecN [Burkholderia thailandensis E264] Length = 549 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F A+L L FD+ T+F G+ G GK+ +++A++ R + A V R Sbjct: 2 LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114 GS G ADIS + T DR R L +D V+ RVVD Sbjct: 57 TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96 >gi|49481863|gb|AAT66643.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 19/105 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL L FD T+ G+ G GK+ I++AI L G G ++ R G+ Sbjct: 5 LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGXG-----SSEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 A +EG+ L D DDR C + D+ + V D Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90 >gi|169783320|ref|XP_001826122.1| structural maintenance of chromosomes protein 4 [Aspergillus oryzae RIB40] gi|83774866|dbj|BAE64989.1| unnamed protein product [Aspergillus oryzae] Length = 1433 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 5/57 (8%) Query: 3 NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 +R+ IK L ++ F++YA ++V F A + VG NG GK+N+++A+ F+ GFR Sbjct: 227 SRMVIKTLILNNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFR 280 >gi|310817573|ref|YP_003949931.1| DNA replication and repair protein [Stigmatella aurantiaca DW4/3-1] gi|309390645|gb|ADO68104.1| DNA replication and repair protein [Stigmatella aurantiaca DW4/3-1] Length = 152 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA---ISFLSPGRGFRRASYA 62 L + F++Y S RL A+ T+ +G N GK+N+LEA +S+L+ GR YA Sbjct: 5 LGVDNFKSYRSARLPL-AELTVLIGANASGKSNLLEALQMLSWLARGRRLSEILYA 59 >gi|305663212|ref|YP_003859500.1| SMC domain protein [Ignisphaera aggregans DSM 17230] gi|304377781|gb|ADM27620.1| SMC domain protein [Ignisphaera aggregans DSM 17230] Length = 492 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +R+ ++ + I F++ L L + VG N GKTNILEA+ FL Sbjct: 12 DRVFVRRIYIENFKSIKHLELELSPGVNVLVGPNASGKTNILEALDFL 59 >gi|300784656|ref|YP_003764947.1| ATPase [Amycolatopsis mediterranei U32] gi|299794170|gb|ADJ44545.1| ATPase [Amycolatopsis mediterranei U32] Length = 390 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 11/109 (10%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFR- 57 MT I+ L I FR + L T +G NG GK+ + +A+ FLS G R Sbjct: 1 MTLTTGIERLRIRNFRVLRDVELAGLTPVTALLGPNGSGKSTVFDALDFLSESLRAGLRS 60 Query: 58 ----RASYADVTRIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSV 100 R AD+ GS P R+EG +A+ + +E DD V Sbjct: 61 AWNQRGGAADIVTHGSTGPVEIEVTCRIEGA--VAEYRLAIEHDDDEPV 107 >gi|160899596|ref|YP_001565178.1| ATP-dependent endonuclease family protein [Delftia acidovorans SPH-1] gi|163858601|ref|YP_001632899.1| hypothetical protein Bpet4283 [Bordetella petrii DSM 12804] gi|160365180|gb|ABX36793.1| ATP-dependent endonuclease family protein [Delftia acidovorans SPH-1] gi|163262329|emb|CAP44632.1| conserved hypothetical protein [Bordetella petrii] Length = 600 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRR 58 ++I + + +FR S +V + H++F+GDN VGK+ +LEAI L P R RR Sbjct: 1 MQIAKVKVEKFRGIES-GIVTLSGHSVFLGDNNVGKSTLLEAIDLVLGPERLSRR 54 >gi|290889933|ref|ZP_06553020.1| hypothetical protein AWRIB429_0410 [Oenococcus oeni AWRIB429] gi|290480543|gb|EFD89180.1| hypothetical protein AWRIB429_0410 [Oenococcus oeni AWRIB429] Length = 1184 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+K L I+ F+++A ++ F T VG NG GK+NI+EAI ++ +G R + Sbjct: 1 MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60 Query: 61 YADVTRIGS 69 ADV GS Sbjct: 61 MADVIFGGS 69 >gi|188582301|ref|YP_001925746.1| ATP-dependent endonuclease [Methylobacterium populi BJ001] gi|179345799|gb|ACB81211.1| ATP-dependent endonuclease family protein [Methylobacterium populi BJ001] Length = 598 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRAS 60 +KI + I FR S +LV H + +GDN GK+++ EAI L P R RR Sbjct: 1 MKIFSVVIENFRGIQSAKLVL-PDHAVLIGDNNTGKSSVFEAIDLALGPDRLSRRPP 56 >gi|118587505|ref|ZP_01544929.1| chromosome segregation SMC protein [Oenococcus oeni ATCC BAA-1163] gi|118431956|gb|EAV38698.1| chromosome segregation SMC protein [Oenococcus oeni ATCC BAA-1163] Length = 1184 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+K L I+ F+++A ++ F T VG NG GK+NI+EAI ++ +G R + Sbjct: 1 MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60 Query: 61 YADVTRIGS 69 ADV GS Sbjct: 61 MADVIFGGS 69 >gi|116490532|ref|YP_810076.1| condensin subunit Smc [Oenococcus oeni PSU-1] gi|116091257|gb|ABJ56411.1| condensin subunit Smc [Oenococcus oeni PSU-1] Length = 1184 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+K L I+ F+++A ++ F T VG NG GK+NI+EAI ++ +G R + Sbjct: 1 MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60 Query: 61 YADVTRIGS 69 ADV GS Sbjct: 61 MADVIFGGS 69 >gi|284105821|ref|ZP_06386225.1| chromosome segregation protein SMC [Candidatus Poribacteria sp. WGA-A3] gi|283830108|gb|EFC34374.1| chromosome segregation protein SMC [Candidatus Poribacteria sp. WGA-A3] Length = 1216 Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 29/43 (67%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +K+K L +S F+++ RL F T VG NGVGK+N+++AI Sbjct: 1 MKLKSLLVSGFKSFPEARLDFPQGITAVVGPNGVGKSNVVDAI 43 >gi|222480011|ref|YP_002566248.1| AAA ATPase [Halorubrum lacusprofundi ATCC 49239] gi|222452913|gb|ACM57178.1| AAA ATPase [Halorubrum lacusprofundi ATCC 49239] Length = 577 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 13/102 (12%) Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI--SNTTGFAPILLLDEISA 324 GP + D D D IT + + +A+ R + S+TT ++ I+ DE + Sbjct: 476 GPRKYDRAGDLSDAEITFMN----------ISFAVAYNRFVRESDTTEWSTIVC-DEPFS 524 Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 +LD + R L + QI T +DKS+ D +T + R Sbjct: 525 NLDAEGRVNLLEFIESCDEQIICTSSDKSLLDEFPKTGQLTR 566 >gi|295399111|ref|ZP_06809093.1| DNA repair protein RecN [Geobacillus thermoglucosidasius C56-YS93] gi|312110286|ref|YP_003988602.1| DNA repair protein RecN [Geobacillus sp. Y4.1MC1] gi|294978577|gb|EFG54173.1| DNA repair protein RecN [Geobacillus thermoglucosidasius C56-YS93] gi|311215387|gb|ADP73991.1| DNA repair protein RecN [Geobacillus sp. Y4.1MC1] Length = 573 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL + FD T+ G+ G GK+ I++AI L GRG A+ R G Sbjct: 5 LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|49481967|gb|AAT66695.1| DNA repair and genetic recombination protein [Bacillus thermantarcticus] Length = 573 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL + FD T+ G+ G GK+ I++AI L GRG A+ R G Sbjct: 5 LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|284054275|ref|ZP_06384485.1| ATPase [Arthrospira platensis str. Paraca] gi|291568930|dbj|BAI91202.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 395 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 M+ KI++L + +R +L L T+F+G NG GK+ I + +FLS Sbjct: 1 MSTIPKIEYLKVRNYRALQNLELKKITPLTVFLGPNGSGKSTIFDVFAFLS 51 >gi|116330711|ref|YP_800429.1| chromosome segregation ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124400|gb|ABJ75671.1| Chromosome segregation ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 924 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K LNI F+ +A ++ D T VG NG GK+NI++A+ ++ +G R Sbjct: 3 LKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGEKMD 62 Query: 63 DVTRIGSPS 71 DV GS + Sbjct: 63 DVIFHGSEA 71 >gi|237654254|ref|YP_002890568.1| ATPase AAA [Thauera sp. MZ1T] gi|237625501|gb|ACR02191.1| AAA ATPase [Thauera sp. MZ1T] Length = 530 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAIS 48 +++ ++I F+N L L FD + T+ +G NG GK+N++EAI+ Sbjct: 1 MRLDKVSIDGFKNLRGLELDFDERQLTTVLIGQNGAGKSNLIEAIT 46 >gi|49481987|gb|AAT66705.1| DNA repair and genetic recombination protein [Geobacillus thermoglucosidasius] Length = 573 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL + FD T+ G+ G GK+ I++AI L GRG A+ R G Sbjct: 5 LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|254501687|ref|ZP_05113838.1| TOBE domain family [Labrenzia alexandrii DFL-11] gi|222437758|gb|EEE44437.1| TOBE domain family [Labrenzia alexandrii DFL-11] Length = 360 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 17/228 (7%) Query: 24 VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVTRIG-----SPSFFSTFA 77 V +T+F+G +G GKT +L I FL+P G D+T + + + F +A Sbjct: 28 VPTGTYTVFLGPSGSGKTTLLSVIGGFLTPDTGQVLIKGQDMTSVAPARRPTTTVFQDYA 87 Query: 78 RVEGMEGLADISIKLETRD----DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133 M LA+++ L R +R+ R + D+V E K +S + Sbjct: 88 LFPHMSILANVAFGLRMRGVDGAERNRRAAAMLDLVGLSHQERKKPHELSGGQRQRVALA 147 Query: 134 SGLSMERR-RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 L++E LD + A+D + R +M + ++G R + + + + + Sbjct: 148 RALAVEPTVLLLDEPLGALDLKLRHQM---QAELKGIQREVKTSFIHVTHDQEEAMAIGD 204 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQS 239 V +N R+E + + + +E K F + + FLDG+ DQS Sbjct: 205 TVVVMNTGRIEDLGSPERVYLE--PKTLFAAGFMGQSSFLDGRVADQS 250 >gi|49481977|gb|AAT66700.1| DNA repair and genetic recombination protein [Geobacillus thermoglucosidasius] Length = 573 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL + FD T+ G+ G GK+ I++AI L GRG A+ R G Sbjct: 5 LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|49481989|gb|AAT66706.1| DNA repair and genetic recombination protein [Geobacillus thermoglucosidasius] Length = 573 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL + FD T+ G+ G GK+ I++AI L GRG A+ R G Sbjct: 5 LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|300856330|ref|YP_003781314.1| phage-like protein [Clostridium ljungdahlii DSM 13528] gi|300436445|gb|ADK16212.1| phage-related protein [Clostridium ljungdahlii DSM 13528] Length = 661 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M+NRI +K L + F+ L + F+ I+ GDNG GKT + +A ++L + + S Sbjct: 1 MSNRIVLKGLYLKNFKGIKELDIDFENTTNIY-GDNGTGKTTVFDAFAWLLFDKDSQNIS 59 Query: 61 YADV 64 DV Sbjct: 60 KFDV 63 >gi|218263846|ref|ZP_03477815.1| hypothetical protein PRABACTJOHN_03505 [Parabacteroides johnsonii DSM 18315] gi|218222445|gb|EEC95095.1| hypothetical protein PRABACTJOHN_03505 [Parabacteroides johnsonii DSM 18315] Length = 239 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA-ISFLS-----PGRGFRR 58 ++I ++I FR + R+ F+ TIFVG N GKT+ + A I FL R F Sbjct: 1 MRIDHIHIRNFRKLKNCRIDFNKDQTIFVGANNSGKTSAMSAIIWFLKDQNRFTTREFTL 60 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGL 85 ++ D+ + + S+ + +E E L Sbjct: 61 TNWRDINELAN-SWLAVNDEMENREEL 86 >gi|163790193|ref|ZP_02184626.1| DNA repair protein RecN [Carnobacterium sp. AT7] gi|159874468|gb|EDP68539.1| DNA repair protein RecN [Carnobacterium sp. AT7] Length = 572 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L I +F +L L F+ T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELTIKDFAIIQNLNLSFNQGMTVLTGETGAGKSIIIDAVGLLAGGRG 50 >gi|116328632|ref|YP_798352.1| chromosome segregation ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121376|gb|ABJ79419.1| Chromosome segregation ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 924 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K LNI F+ +A ++ D T VG NG GK+NI++A+ ++ +G R Sbjct: 3 LKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGEKMD 62 Query: 63 DVTRIGSPS 71 DV GS + Sbjct: 63 DVIFHGSEA 71 >gi|326536438|ref|YP_004300868.1| endonuclease subunit [Aeromonas phage 65] gi|40795444|gb|AAR90909.1| endonuclease subunit [Aeromonas phage 65] Length = 775 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 6/54 (11%) Query: 11 NISEFRNYAS-----LRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 N E++N S +R+ D + T+ G NG GK+ ++EA+SFL G+ +R+ Sbjct: 6 NYIEYKNIMSVGSNPIRVQLDLTEKTLVTGTNGAGKSTMIEALSFLLYGKSYRK 59 >gi|49481993|gb|AAT66708.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A92] Length = 573 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL + FD T+ G+ G GK+ I++AI L GRG A+ R G Sbjct: 5 LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|238910207|ref|ZP_04654044.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 465 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 26/43 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 ++I L++ FR + L + FD TI V NG GKT +L+AI Sbjct: 1 MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTAVLDAI 43 >gi|225414557|ref|ZP_03761746.1| hypothetical protein CLOSTASPAR_05780 [Clostridium asparagiforme DSM 15981] gi|225041913|gb|EEG52159.1| hypothetical protein CLOSTASPAR_05780 [Clostridium asparagiforme DSM 15981] Length = 434 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 ++I L +++FR L+L D + I G NGVGK+ IL A++ L Sbjct: 1 MRINALYLNDFRGIHELKLSLDGKSMILFGINGVGKSTILSAVNLL 46 >gi|189095435|ref|YP_001936448.1| heat shock protein 70 [Heterosigma akashiwo] gi|157694778|gb|ABV66054.1| Hsp70-type chaperone [Heterosigma akashiwo] gi|157778009|gb|ABV70195.1| Hsp70-type chaperone [Heterosigma akashiwo] Length = 612 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQS 239 C E Q+ EL K++ ++ +N L + E + EN+P +K +L+G + GK Q Sbjct: 538 LCYQSEKQVEELKEKVSTESIQSVNNLIAKTRESLIAENYPELKENLSGLTEALGKMQQE 597 Query: 240 FCALKEEYAKKLFD 253 L+ E K + D Sbjct: 598 II-LETELPKPIID 610 >gi|49481969|gb|AAT66696.1| DNA repair and genetic recombination protein [Geobacillus thermoglucosidasius] gi|49481975|gb|AAT66699.1| DNA repair and genetic recombination protein [Geobacillus thermoglucosidasius] gi|49481983|gb|AAT66703.1| DNA repair and genetic recombination protein [Geobacillus thermoglucosidasius] gi|49481985|gb|AAT66704.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL + FD T+ G+ G GK+ I++AI L GRG A+ R G Sbjct: 5 LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 EK-----AEIEGL 67 >gi|126695406|ref|YP_001090292.1| SMC ATPase superfamily chromosome segregation protein [Prochlorococcus marinus str. MIT 9301] gi|126542449|gb|ABO16691.1| putative chromosome segregation protein, SMC ATPase superfamily [Prochlorococcus marinus str. MIT 9301] Length = 1196 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 15/94 (15%) Query: 10 LNISEFRNYAS----LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62 +N EF N+ S +++ + T+ G NG GK+NIL+ I F LS RG R Sbjct: 6 INQVEFENFKSFGGNVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLSNSRGMR----- 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96 R+ P + EG +S+K +D Sbjct: 61 -AERL--PDLINNSKVKEGKSSETSVSVKFNIQD 91 >gi|313900030|ref|ZP_07833530.1| conserved hypothetical protein [Clostridium sp. HGF2] gi|312955082|gb|EFR36750.1| conserved hypothetical protein [Clostridium sp. HGF2] Length = 249 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/27 (59%), Positives = 21/27 (77%) Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAIS 48 +L FDA T FVG+NG GK+ +LEAI+ Sbjct: 36 QLSFDAPVTFFVGENGTGKSTLLEAIA 62 >gi|87300931|ref|ZP_01083773.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. WH 5701] gi|87284802|gb|EAQ76754.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. WH 5701] Length = 342 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 114/244 (46%), Gaps = 25/244 (10%) Query: 133 FSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 FS L +E RR++LDR+V ++P + + + RL+R R++LL G Sbjct: 86 FSALDLELVRGEPALRRQWLDRVVLQLEPVYGELLARYGRLLRQRSQLLRRGLSQGEQQL 145 Query: 181 -SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGK 235 S + + Q+A +G +++ R + L L + ++ + +L L L+G+ Sbjct: 146 HSLLDAFDLQIALIGTRLHRRRRRALARLQPLAAAWQERLSGGREQLELRYQAGSQLEGE 205 Query: 236 FDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 ++ AL E+ ++ + R++ + +GPHR D + + GS G+Q+ Sbjct: 206 EAEAPWREALLEQLRRQRPEERRLGACQ----VGPHR-DEVAMLLGEEPARRFGSAGQQR 260 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 +++ + LA L+ G P+LLLD++ A + KR L V G Q ++ T + Sbjct: 261 TLVLALKLAELELVQQLWGEPPLLLLDDVLA-ELDPKRQELLLEVVGTGHQCLVSATHLT 319 Query: 354 VFDS 357 F + Sbjct: 320 SFST 323 >gi|118479365|ref|YP_896516.1| DNA repair protein [Bacillus thuringiensis str. Al Hakam] gi|118418590|gb|ABK87009.1| DNA replication and repair protein RecN [Bacillus thuringiensis str. Al Hakam] Length = 600 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 13/83 (15%) Query: 3 NRIKIKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59 N + L+ RN+A SL + F T+ G+ G GK+ I++AIS L GRG Sbjct: 16 NEVNGALLSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG---- 71 Query: 60 SYADVTRIGSPSFFSTFARVEGM 82 A+ R G+ A +EG+ Sbjct: 72 -SAEFVRYGTEK-----AEIEGL 88 >gi|257790558|ref|YP_003181164.1| SMC domain-containing protein [Eggerthella lenta DSM 2243] gi|257474455|gb|ACV54775.1| SMC domain protein [Eggerthella lenta DSM 2243] Length = 564 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +KI L I +R+ L L + +F+G N VGK+NIL A+ +L Sbjct: 1 MKIDKLTIKNYRSVRDLELSLSPRINVFIGANNVGKSNILSAMEYL 46 >gi|312966699|ref|ZP_07780918.1| recF/RecN/SMC N terminal domain protein [Escherichia coli 2362-75] gi|312288651|gb|EFR16552.1| recF/RecN/SMC N terminal domain protein [Escherichia coli 2362-75] Length = 550 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 N ++ L + +FR ++ L + F+ T+ +G+NG GKT+IL AI+ Sbjct: 62 NAFYLRRLTLKDFRRFSLLEIKFEEDLTVIIGNNGKGKTSILYAIA 107 >gi|227515675|ref|ZP_03945724.1| DNA repair protein RecN [Lactobacillus fermentum ATCC 14931] gi|227085978|gb|EEI21290.1| DNA repair protein RecN [Lactobacillus fermentum ATCC 14931] Length = 564 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 L L FD T+ G+ G GK+ I++A+S L+ GRG Sbjct: 16 LSLEFDDHMTVLTGETGAGKSIIIDAVSLLAGGRG 50 >gi|184155733|ref|YP_001844073.1| DNA repair protein RecN [Lactobacillus fermentum IFO 3956] gi|260663550|ref|ZP_05864440.1| DNA repair protein RecN [Lactobacillus fermentum 28-3-CHN] gi|183227077|dbj|BAG27593.1| DNA repair protein RecN [Lactobacillus fermentum IFO 3956] gi|260552091|gb|EEX25144.1| DNA repair protein RecN [Lactobacillus fermentum 28-3-CHN] gi|299783412|gb|ADJ41410.1| DNA repair protein RecN [Lactobacillus fermentum CECT 5716] Length = 564 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 L L FD T+ G+ G GK+ I++A+S L+ GRG Sbjct: 16 LSLEFDDHMTVLTGETGAGKSIIIDAVSLLAGGRG 50 >gi|323187247|gb|EFZ72559.1| recF/RecN/SMC N terminal domain protein [Escherichia coli RN587/1] Length = 550 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 N ++ L + +FR ++ L + F+ T+ +G+NG GKT+IL AI+ Sbjct: 62 NAFYLRRLTLKDFRRFSLLEIKFEEDLTVIIGNNGKGKTSILYAIA 107 >gi|34540533|ref|NP_905012.1| antigen PgaA [Porphyromonas gingivalis W83] gi|1296973|emb|CAA65182.1| pgaA [Porphyromonas gingivalis] gi|34396846|gb|AAQ65911.1| antigen PgaA [Porphyromonas gingivalis W83] Length = 445 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 I ++I EFR+ L L F + +GDNG GKT++L+A ++ Sbjct: 2 ISRIHIEEFRDIGDLELFFLPGVNLLIGDNGSGKTSVLKACQYV 45 >gi|307271996|ref|ZP_07553263.1| DNA repair protein RecN [Enterococcus faecalis TX0855] gi|306511343|gb|EFM80346.1| DNA repair protein RecN [Enterococcus faecalis TX0855] Length = 530 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L++ F +SL+L F T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50 >gi|296125386|ref|YP_003632638.1| ABC transporter [Brachyspira murdochii DSM 12563] gi|296017202|gb|ADG70439.1| ABC transporter related protein [Brachyspira murdochii DSM 12563] Length = 606 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%) Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 VL G +A L++ T A +L+LDE + HLD + AL + D G IF T D++ Sbjct: 402 VLSGGEMARLSLLAAITQCADVLILDEPTNHLDFETVEALASSLRDYGGTIFFTSHDRTF 461 Query: 355 FDSLNET 361 L +T Sbjct: 462 ASMLADT 468 >gi|256832209|ref|YP_003160936.1| chromosome segregation protein SMC [Jonesia denitrificans DSM 20603] gi|256685740|gb|ACV08633.1| chromosome segregation protein SMC [Jonesia denitrificans DSM 20603] Length = 1172 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 39/183 (21%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L + F+++AS R F+ T VG NG GK+N+++A++++ +G R Sbjct: 1 MHLKTLTVRGFKSFASATRFDFEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR---------SVRCL-------- 103 DV F T AR G A++S+ ++ D R R L Sbjct: 61 MEDVI------FAGTSAR--PALGRAEVSLTIDNSDGRLPIEFSEVTITRTLFRQGGSEY 112 Query: 104 QINDVVIRVVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 IN +R++D L + + + +D + ERR F++ + +H Sbjct: 113 AINGAPVRLLDIQELLSDTGLGREMHVIVGQGQLDTVLRATPTERRGFIEEAAGVL--KH 170 Query: 156 RRR 158 RRR Sbjct: 171 RRR 173 >gi|238493087|ref|XP_002377780.1| nuclear condensin complex subunit Smc4, putative [Aspergillus flavus NRRL3357] gi|220696274|gb|EED52616.1| nuclear condensin complex subunit Smc4, putative [Aspergillus flavus NRRL3357] Length = 1294 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 5/57 (8%) Query: 3 NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 +R+ IK L ++ F++YA ++V F A + VG NG GK+N+++A+ F+ GFR Sbjct: 88 SRMVIKTLILNNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFR 141 >gi|283853147|ref|ZP_06370401.1| ABC transporter related protein [Desulfovibrio sp. FW1012B] gi|283571486|gb|EFC19492.1| ABC transporter related protein [Desulfovibrio sp. FW1012B] Length = 658 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 24/102 (23%) Query: 263 RTLIGPHRSDLIV-----------DYCDKAITIAHGSTGEQ-KVVLVGIFLAHARLISNT 310 R + GP + L V DY ++ ++ G GE+ ++VL G+F A A Sbjct: 414 RRMAGPKATHLEVCSILGLFLLGEDYWERRVSELSG--GEKSRLVLAGLFSARANF---- 467 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+LDE + HLD + R AL R +++ I M D+ Sbjct: 468 ------LVLDEPTNHLDLESREALVRALSEYAGTILMVAHDR 503 >gi|302689731|ref|XP_003034545.1| hypothetical protein SCHCODRAFT_81772 [Schizophyllum commune H4-8] gi|300108240|gb|EFI99642.1| hypothetical protein SCHCODRAFT_81772 [Schizophyllum commune H4-8] Length = 1107 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 13/147 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+F+ +S+F + L F Q +G NG GK+ +L AI+ G+ Sbjct: 100 IEFIEMSQFMCHKLLSFNFGPQINFIIGHNGSGKSAVLSAITVALGGK---------TAS 150 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + +F R EG + +A+++I L+ + D + + + ++ + K S+ + Sbjct: 151 TGRGAGLKSFIR-EG-QSVAEVTIMLKNQGDEAYKPQEYGKSIV-ITRRFTKDGNSSYKI 207 Query: 127 PSMD-RIFSGLSMERRRFLDRMVFAID 152 S D R+ S E D M +D Sbjct: 208 KSKDGRVISTKKDELSAICDHMGIQVD 234 >gi|124003422|ref|ZP_01688271.1| ATP-binding protein [Microscilla marina ATCC 23134] gi|123990991|gb|EAY30443.1| ATP-binding protein [Microscilla marina ATCC 23134] Length = 449 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 5 IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLS 51 +KIK L ++ FR + L++ F D +F+G NG GK+++L+A+ S Sbjct: 1 MKIKELELNNFRGFKHLKIQFPDNNLAVFIGTNGSGKSSVLDALGMAS 48 >gi|110632905|ref|YP_673113.1| ATP-dependent OLD family endonuclease [Mesorhizobium sp. BNC1] gi|110283889|gb|ABG61948.1| ATP-dependent endonuclease of the OLD family-like protein [Chelativorans sp. BNC1] Length = 615 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRR 58 ++++ L I+ FR + + F HT+ VG N VGK+ + EA+ L P R FRR Sbjct: 1 MRVRRLKITNFRGVSQGCIDFSG-HTLLVGGNNVGKSTVCEALDLVLGPERLFRR 54 >gi|284036061|ref|YP_003385991.1| ATPase [Spirosoma linguale DSM 74] gi|283815354|gb|ADB37192.1| ATPase-like protein [Spirosoma linguale DSM 74] Length = 366 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 26/43 (60%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + + I F+ + S + Q + VGDN VGKT++LEA++F Sbjct: 6 LTYFKIENFKRFDSFEMSNLGQFNLIVGDNNVGKTSVLEALTF 48 >gi|325912269|ref|ZP_08174666.1| putative DNA replication and repair protein RecF [Lactobacillus iners UPII 143-D] gi|325475928|gb|EGC79097.1| putative DNA replication and repair protein RecF [Lactobacillus iners UPII 143-D] Length = 105 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 + S G+Q+ +++ I LA L+ PILLLD++ + LD ++ L + +Q Sbjct: 15 YASQGQQRSIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQT 73 Query: 346 FMTGTD-KSVFDSLNETAKFMRI 367 F+T TD S+ + + + RI Sbjct: 74 FITTTDINSISQEMIKIPRIFRI 96 >gi|302348755|ref|YP_003816393.1| DNA double-strand break repair rad50 ATPase [Acidilobus saccharovorans 345-15] gi|302329167|gb|ADL19362.1| DNA double-strand break repair rad50 ATPase [Acidilobus saccharovorans 345-15] Length = 912 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 ++VD + IA S GEQ V+ + LA R++ + GF LLLDE + LD+++R Sbjct: 804 VVVDRQGRERPIASLSGGEQIVIALAYVLALNRMMHSNIGF---LLLDEPTDMLDDERRR 860 Query: 333 ALFRIV 338 AL ++ Sbjct: 861 ALVDVL 866 >gi|237813687|ref|YP_002898138.1| DNA repair protein RecN [Burkholderia pseudomallei MSHR346] gi|237504744|gb|ACQ97062.1| DNA repair protein RecN [Burkholderia pseudomallei MSHR346] Length = 549 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 27/115 (23%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F A+L L FD+ T+F G+ G GK+ +++A++ R + A V R Sbjct: 2 LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114 GS G ADIS + T DR R L D V+ RVVD Sbjct: 57 TGS--------------GRADISAEF-TPHDRVARWLDEHAFDAEDTVMLRRVVD 96 >gi|323448058|gb|EGB03962.1| hypothetical protein AURANDRAFT_72635 [Aureococcus anophagefferens] Length = 1259 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 1 MTNRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF--LSP 52 M + IK ++IS FR++ + FD H +G NG GK+N +A+ F LSP Sbjct: 1 MAAALSIKTISISGFRSFRQQDAIESFDPGHNALIGRNGSGKSNFFDAVQFVLLSP 56 >gi|119510679|ref|ZP_01629807.1| ATP binding protein [Nodularia spumigena CCY9414] gi|119464633|gb|EAW45542.1| ATP binding protein [Nodularia spumigena CCY9414] Length = 423 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFL 50 +K+K L + FR L L F+ + TI +G NGVGK++I+E ++ L Sbjct: 1 MKVKRLKMQSFRGIGDLTLDFNQNEPTILIGINGVGKSSIIECLAIL 47 >gi|332664566|ref|YP_004447354.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333380|gb|AEE50481.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 398 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT---RIGSPSFFSTFARVEGMEGLA 86 +F+G+NG GK+NILEA+ F S G R + ++ R+ PS + +G + Sbjct: 37 NVFIGENGCGKSNILEAVGFASAGVENRVDNENLISKGVRVAKPSLI--ISNFKGRKQAK 94 Query: 87 DISIKLETRDDRSV 100 +I++ +D +++ Sbjct: 95 QFNIEILVKDKKNL 108 >gi|326771794|ref|ZP_08231079.1| chromosome segregation protein SMC [Actinomyces viscosus C505] gi|326637927|gb|EGE38828.1| chromosome segregation protein SMC [Actinomyces viscosus C505] Length = 435 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L I F+++AS L + T VG NG GK+N+++A++++ +G R S Sbjct: 22 VHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 81 Query: 61 YADVTRIGSPS 71 ADV G+ S Sbjct: 82 MADVIFAGAGS 92 >gi|170589952|ref|XP_001899737.1| SMC proteins Flexible Hinge Domain containing protein [Brugia malayi] gi|158592863|gb|EDP31459.1| SMC proteins Flexible Hinge Domain containing protein [Brugia malayi] Length = 1204 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL 50 IK +NIS FR+Y + F +H + VG NG GK+N AI F+ Sbjct: 3 IKEVNISGFRSYRETTVNDFSPRHNVVVGRNGSGKSNFFFAIQFV 47 >gi|302343404|ref|YP_003807933.1| chromosome segregation protein SMC [Desulfarculus baarsii DSM 2075] gi|301640017|gb|ADK85339.1| chromosome segregation protein SMC [Desulfarculus baarsii DSM 2075] Length = 1188 Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 14/94 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAISFL---SPGRGFRRA 59 +K+K L IS F+++A R V D + VG NG GK+N+++AI ++ R R Sbjct: 1 MKVKRLEISGFKSFAQ-RAVLDFPDGLCAVVGPNGCGKSNVVDAIRWVLGEQSARQLRGQ 59 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93 + DV G+ S T GLA++SI E Sbjct: 60 AMEDVIFNGAQSHKPT--------GLAEVSIVFE 85 >gi|260579026|ref|ZP_05846928.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] gi|258602891|gb|EEW16166.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] Length = 549 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 K++ N +NY + F Q+ + VG NG GK+ +LEAI GR Sbjct: 10 KVRIRNFKGLQNYEA---TFSPQYNVIVGANGAGKSTLLEAIGLAIGGR 55 >gi|312070433|ref|XP_003138144.1| SMC protein Flexible Hinge Domain containing protein [Loa loa] gi|307766691|gb|EFO25925.1| SMC protein Flexible Hinge Domain containing protein [Loa loa] Length = 1160 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL 50 IK +NIS FR+Y + F +H + VG NG GK+N AI F+ Sbjct: 3 IKEVNISGFRSYRETTVNDFSPRHNVVVGRNGSGKSNFFFAIQFV 47 >gi|224099040|ref|XP_002311359.1| predicted protein [Populus trichocarpa] gi|222851179|gb|EEE88726.1| predicted protein [Populus trichocarpa] Length = 1476 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 16/132 (12%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89 T +G +G GKT +++ +S GR + ++ G P TFAR+ G ADI Sbjct: 917 TALMGVSGAGKTTLMDVLS----GRKTGGTTEGEIRIGGYPKVQDTFARISGYCEQADIH 972 Query: 90 IKLETRDDRSV--RCLQINDVV-----IRVVDELNKHLRISWLVPSMDRI--FSGLSMER 140 T ++ V L++ V+ V+E+ + + + W+ S+ I SGLS E+ Sbjct: 973 SPQITIEESVVFSAWLRLPSVIDPKTKFDFVNEVLETIELDWIKDSLVGIPGISGLSTEQ 1032 Query: 141 RRFLDRMVFAID 152 R+ R+ A++ Sbjct: 1033 RK---RLTIAVE 1041 >gi|291614647|ref|YP_003524804.1| SMC domain protein [Sideroxydans lithotrophicus ES-1] gi|291584759|gb|ADE12417.1| SMC domain protein [Sideroxydans lithotrophicus ES-1] Length = 685 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 25/43 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 + IK L I FR + + FD + I VG N +GKT ILE+I Sbjct: 1 MHIKTLRIKNFRAIEDVNVEFDNRVNIIVGPNAIGKTTILESI 43 >gi|325067015|ref|ZP_08125688.1| chromosome segregation protein SMC [Actinomyces oris K20] Length = 194 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 42/192 (21%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L I F+++AS L + T VG NG GK+N+++A++++ +G R S Sbjct: 1 MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---------RCL-------- 103 ADV G+ S + G A++S+ ++ D R L Sbjct: 61 MADVIFAGAGSRPAL--------GRAEVSLTIDNTDGALPIDYTEVTISRTLFRGGGSEY 112 Query: 104 QINDVVIRVVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 +IN R++D L + + + +D + S +RR F++ + +H Sbjct: 113 RINGSPCRLLDVQELLSDTGLGRQMHVIVGQGQLDAVLSATPEDRRGFIEEAAGVL--KH 170 Query: 156 RRRMIDFERLMR 167 R+R ER +R Sbjct: 171 RKRK---ERALR 179 >gi|294827836|ref|NP_711490.2| chromosome segregation protein [Leptospira interrogans serovar Lai str. 56601] gi|293385681|gb|AAN48508.2| chromosome segregation protein [Leptospira interrogans serovar Lai str. 56601] Length = 924 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K LNI F+ +A ++ D T VG NG GK+NI++A+ ++ +G R Sbjct: 3 LKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGDKMD 62 Query: 63 DVTRIGSPS 71 DV GS + Sbjct: 63 DVIFHGSEA 71 >gi|167767268|ref|ZP_02439321.1| hypothetical protein CLOSS21_01787 [Clostridium sp. SS2/1] gi|167711243|gb|EDS21822.1| hypothetical protein CLOSS21_01787 [Clostridium sp. SS2/1] Length = 545 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 24/44 (54%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 + I F+ Y ++FD I VGDN GK+ ILEAI+ G Sbjct: 6 VKIHNFKCYRDFEIIFDEGLNIVVGDNEAGKSTILEAINLALTG 49 >gi|45658257|ref|YP_002343.1| chromosome segregation protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601499|gb|AAS70980.1| chromosome segregation protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 924 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K LNI F+ +A ++ D T VG NG GK+NI++A+ ++ +G R Sbjct: 3 LKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGDKMD 62 Query: 63 DVTRIGSPS 71 DV GS + Sbjct: 63 DVIFHGSEA 71 >gi|212637201|ref|YP_002313726.1| ATPase [Shewanella piezotolerans WP3] gi|212558685|gb|ACJ31139.1| ATPase [Shewanella piezotolerans WP3] Length = 433 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 27/42 (64%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 I L ++ FR++ L FD + T+ + NG GK+++L+A++ Sbjct: 3 IDTLKLTNFRSFEDFELQFDPRLTVLIARNGAGKSSVLDAVA 44 >gi|27379819|ref|NP_771348.1| ATP-binding protein [Bradyrhizobium japonicum USDA 110] gi|27352972|dbj|BAC49973.1| bll4708 [Bradyrhizobium japonicum USDA 110] Length = 255 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%) Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFLS------PGRGFRRASYADV 64 L FDA TI VG+NG GK+ ILE I+ L+ G+G+ ++D Sbjct: 43 FELSFDAAITIIVGENGTGKSTILEGIAALAGYDDAGGGKGYMPVDHSDA 92 >gi|317405488|gb|EFV85797.1| ABC transporter like protein [Achromobacter xylosoxidans C54] Length = 537 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Query: 18 YASLRLVFDAQHTIFVGDNGVGKT---NILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 ++ L FDA+ T VG NGVGKT IL S GR R S + + SP + Sbjct: 22 FSGLDETFDARPTGLVGRNGVGKTVLARILAGQLPPSSGRCLRSGSVFYLAQQISPPAGA 81 Query: 75 TFARVEGMEGLADISIKLET 94 T A + G++ D ++E Sbjct: 82 TVASLAGLQATLDALARIEA 101 >gi|317508545|ref|ZP_07966210.1| RecF/RecN/SMC N terminal domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316253171|gb|EFV12576.1| RecF/RecN/SMC N terminal domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 774 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 + ++ L + F+++AS LVF+ T VG NG GK+NI +A+S++ +G + Sbjct: 1 MHLRSLTLKGFKSFASPTTLVFEPGITAVVGANGSGKSNIADALSWVMGEQGAK 54 >gi|198463652|ref|XP_002135548.1| GA28617 [Drosophila pseudoobscura pseudoobscura] gi|198151353|gb|EDY74175.1| GA28617 [Drosophila pseudoobscura pseudoobscura] Length = 307 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 90/214 (42%), Gaps = 41/214 (19%) Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFE 163 N ++ + L KH+ WL+P++ + LS FL I+ H FE Sbjct: 84 NGALMHCAEYLEKHIE-DWLLPALRK----LSATHNYFLFDCPGQIELYTHHNAMARVFE 138 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN-IARVEM--INALSS--LIMEYVQK 218 RL R R L+T DS +CS +A L + +N + R+ + +N LS L+ ++ K Sbjct: 139 RLERERYSLVTVNLIDSHYCSEPAKFIATLLMALNTMMRMSLPHVNVLSKADLLRKHESK 198 Query: 219 ENFP--------HIKLSLTGFLDG-------KFDQSFCALKEEYAK---KLFDGRKMDSM 260 +F +K L D K +++ C++ E+YA +L D DSM Sbjct: 199 LHFNVDYYTDVLDLKYLLEKLDDDPTMRKYQKLNEAICSMVEDYALVSFQLLDAFSTDSM 258 Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 R + ++ DKA + + EQ V Sbjct: 259 LR-----------LRNHIDKANGYVYKAGEEQTV 281 >gi|332638376|ref|ZP_08417239.1| ABC transporter, ATP-binding protein [Weissella cibaria KACC 11862] Length = 219 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314 R+ ++ + G + DL DY DKA+T G ++ VL + F Sbjct: 104 RQQTPNEQQQIAGLEQMDLPADYLDKAVTELSGGERQRVGVLRNLL------------FP 151 Query: 315 P-ILLLDEISAHLDEDKRNALFRIV 338 P +LLLDEIS LD + + ++R + Sbjct: 152 PKVLLLDEISTGLDAETKQVIWRAI 176 >gi|68536328|ref|YP_251033.1| hypothetical protein jk1249 [Corynebacterium jeikeium K411] gi|68263927|emb|CAI37415.1| hypothetical protein jk1249 [Corynebacterium jeikeium K411] Length = 543 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 K++ N +NY + F Q+ + VG NG GK+ +LEAI GR Sbjct: 4 KVRIRNFKGLQNYEA---TFSPQYNVIVGANGAGKSTLLEAIGLAIGGR 49 >gi|229497088|ref|ZP_04390792.1| putative ATP-NAD kinase [Porphyromonas endodontalis ATCC 35406] gi|229316013|gb|EEN81942.1| putative ATP-NAD kinase [Porphyromonas endodontalis ATCC 35406] Length = 289 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370 PI+L D ++ HL R++ F +VTD +F TGT ++ + + +R+SNH Sbjct: 218 PIVLPDTVTLHLKVFSRSSTFMLVTDGNVAVFPTGTPLTIARA-KHPVRLIRLSNH 272 >gi|291559422|emb|CBL38222.1| RecF/RecN/SMC N terminal domain [butyrate-producing bacterium SSC/2] Length = 489 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 24/44 (54%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 + I F+ Y ++FD I VGDN GK+ ILEAI+ G Sbjct: 6 VKIHNFKCYRDFEIIFDEGLNIVVGDNEAGKSTILEAINLALTG 49 >gi|49481963|gb|AAT66693.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A87] Length = 573 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 19/103 (18%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I F SL FD T+ G+ G GK+ I++AI L GRG A+ R G+ Sbjct: 5 LSIKNFAIIESLSXSFDKGLTVLXGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 A +EG+ L D DDR C + +V I V Sbjct: 60 EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88 >gi|28378330|ref|NP_785222.1| cell division protein Smc [Lactobacillus plantarum WCFS1] gi|28271165|emb|CAD64070.1| cell division protein Smc [Lactobacillus plantarum WCFS1] Length = 1185 Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L IS F+++A ++ F A T VG NG GK+NI+EAI ++ + R Sbjct: 1 MQLKSLEISGFKSFADKTKIDFQAGMTGIVGPNGSGKSNIIEAIRWVLGEQAVKSLRGTK 60 Query: 61 YADVTRIGS 69 DV GS Sbjct: 61 MTDVIFAGS 69 >gi|254556538|ref|YP_003062955.1| cell division protein Smc [Lactobacillus plantarum JDM1] gi|300767267|ref|ZP_07077179.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180481|ref|YP_003924609.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045465|gb|ACT62258.1| cell division protein Smc [Lactobacillus plantarum JDM1] gi|300495086|gb|EFK30242.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045972|gb|ADN98515.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1185 Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L IS F+++A ++ F A T VG NG GK+NI+EAI ++ + R Sbjct: 1 MQLKSLEISGFKSFADKTKIDFQAGMTGIVGPNGSGKSNIIEAIRWVLGEQAVKSLRGTK 60 Query: 61 YADVTRIGS 69 DV GS Sbjct: 61 MTDVIFAGS 69 >gi|152976578|ref|YP_001376095.1| DNA repair protein RecN [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025330|gb|ABS23100.1| DNA repair protein RecN [Bacillus cytotoxicus NVH 391-98] Length = 579 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%) Query: 15 FRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 RN+A SL + F T+ G+ G GK+ I++AIS L GRG A+ R G+ Sbjct: 7 IRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVRYGTEK 61 Query: 72 FFSTFARVEGM 82 A +EG+ Sbjct: 62 -----AEIEGL 67 >gi|225619141|ref|YP_002720367.1| hypothetical protein BHWA1_00194 [Brachyspira hyodysenteriae WA1] gi|225213960|gb|ACN82694.1| hypothetical ABC transporter ATP-binding protein [Brachyspira hyodysenteriae WA1] Length = 605 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%) Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 VL G +A L++ T A +L+LDE + HLD + AL + D G IF T D++ Sbjct: 402 VLSGGEMARLSLLAAITQCADVLILDEPTNHLDFETVEALANSLRDYGGTIFFTSHDRTF 461 Query: 355 FDSLNET 361 L +T Sbjct: 462 ASLLADT 468 >gi|115526051|ref|YP_782962.1| ATP-dependent OLD family endonuclease [Rhodopseudomonas palustris BisA53] gi|115519998|gb|ABJ07982.1| ATP-dependent endonuclease of the OLD family-like protein [Rhodopseudomonas palustris BisA53] Length = 582 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 7/99 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62 + I L + FR+ A + + F + T+ VG+N GK+NI++A+ L+ RR Y Sbjct: 1 MHIDCLRLQRFRSCADVTVRFHRELTVLVGENNGGKSNIVDALRLLTLPLSGRRDRYPED 60 Query: 63 -DVTRIGSPSFFSTFARVEG----MEGLADISIKLETRD 96 D+ R + + ++ R G M+GL ++ T D Sbjct: 61 DDLRRGSTETHYALEGRFAGLGDTMKGLLISAVPDPTAD 99 >gi|221043536|dbj|BAH13445.1| unnamed protein product [Homo sapiens] Length = 516 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 +K + I F++Y +++ Q T +G NG GK+N+++AISF+ Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48 >gi|183220805|ref|YP_001838801.1| chromosome segregation ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910905|ref|YP_001962460.1| chromosome segregation ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775581|gb|ABZ93882.1| Chromosome segregation ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779227|gb|ABZ97525.1| Chromosome segregation ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 927 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K LNI F+ +A + FD T VG NG GK+NI++++ ++ +G R Sbjct: 3 LKSLNIVGFKTFADETEINFDPGFTAVVGPNGSGKSNIVDSVKWVFGEKSAKGLRGEKMD 62 Query: 63 DVTRIGSPS 71 DV G+ S Sbjct: 63 DVIFHGTES 71 >gi|171186263|ref|YP_001795182.1| SMC domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170935475|gb|ACB40736.1| SMC domain protein [Thermoproteus neutrophilus V24Sta] Length = 702 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 S GEQ ++ + + +A AR + G AP ++ DE + HLDE+ R + +V D+ Sbjct: 626 SLGEQNLLALSLRVALARAL---LGGAPFMMFDEPTEHLDEEHRRKIVELVRDL 676 >gi|307628250|gb|ADN72554.1| hypothetical protein UM146_15975 [Escherichia coli UM146] Length = 754 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 26/43 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +KI F+ I FR S+R+ + T+FVG N GKT +EA+ Sbjct: 1 MKINFIEIKNFRKLKSVRIDIAEKTTLFVGANNSGKTAAMEAL 43 >gi|160947484|ref|ZP_02094651.1| hypothetical protein PEPMIC_01418 [Parvimonas micra ATCC 33270] gi|158446618|gb|EDP23613.1| hypothetical protein PEPMIC_01418 [Parvimonas micra ATCC 33270] Length = 511 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYA 62 +KI + I+ FR Y + + FD T+ VG N VGK+ ILEA+ F + G+G + Sbjct: 1 MKITSMKINNFRGYNKEINIKFD-DLTVIVGKNDVGKSTILEALDIFFNDGKGTIKLDKN 59 Query: 63 DVT 65 DV Sbjct: 60 DVN 62 >gi|37522431|ref|NP_925808.1| hypothetical protein glr2862 [Gloeobacter violaceus PCC 7421] gi|35213432|dbj|BAC90803.1| glr2862 [Gloeobacter violaceus PCC 7421] Length = 1002 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 7/73 (9%) Query: 9 FLNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L++S F +Y RL F HT + G NG GK+++LEA++++ G+ R S DV R Sbjct: 5 HLSLSNFLSYRDGRLDFSGIHTACICGANGSGKSSLLEALTWVLWGKS-RADSDDDVVRR 63 Query: 68 GSPSFFSTFARVE 80 G +T ARV+ Sbjct: 64 G-----ATEARVD 71 >gi|315640112|ref|ZP_07895234.1| cell division protein Smc [Enterococcus italicus DSM 15952] gi|315484089|gb|EFU74563.1| cell division protein Smc [Enterococcus italicus DSM 15952] Length = 1195 Score = 37.4 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 7 IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K + ++ F+++A+ + F+ Q T VG NG GK+NI EAI ++ S + R Sbjct: 3 LKRIEVAGFKSFANRTTIQFEDQVTAIVGPNGSGKSNITEAIRWVLGESSAKSLRGGRMP 62 Query: 63 DVTRIGSPS 71 D+ GS S Sbjct: 63 DIIFAGSES 71 >gi|81428297|ref|YP_395297.1| DNA repair and genetic recombination protein N [Lactobacillus sakei subsp. sakei 23K] gi|78609939|emb|CAI54986.1| DNA repair and genetic recombination protein N [Lactobacillus sakei subsp. sakei 23K] Length = 567 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 13/79 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I +F L + FD T+ G+ G GK+ I++A+ L+ GR Sbjct: 2 LQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGR------------ 49 Query: 67 IGSPSFFSTFARVEGMEGL 85 GS F T A+ +EGL Sbjct: 50 -GSQDFIRTGAKKATLEGL 67 >gi|325182712|emb|CCA17167.1| structural maintenance of chromosomes protein 3 put [Albugo laibachii Nc14] Length = 1215 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49 IK + +S FR+Y +V F +H + +G NG GK+N +AI F Sbjct: 3 IKQVFVSGFRSYKDQLVVEPFSKEHNVVIGRNGTGKSNFFDAIRF 47 >gi|326403503|ref|YP_004283585.1| putative ABC transporter ATP-binding protein [Acidiphilium multivorum AIU301] gi|325050365|dbj|BAJ80703.1| putative ABC transporter ATP-binding protein [Acidiphilium multivorum AIU301] Length = 622 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 306 LISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 L++ T AP +L+LDE + HLD D R AL R +TD + + D + D Sbjct: 438 LLALATRDAPQVLILDEPTNHLDIDAREALVRAITDFAGAVVLVTHDTHLLD 489 >gi|4127535|emb|CAA09427.1| RecN protein [Geobacillus stearothermophilus] Length = 56 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 26/46 (56%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 L+I F SL + FD T+ G+ G GK+ I++AI L GRG Sbjct: 5 LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG 50 >gi|325672991|ref|ZP_08152685.1| ATP-dependent endonuclease [Rhodococcus equi ATCC 33707] gi|325556244|gb|EGD25912.1| ATP-dependent endonuclease [Rhodococcus equi ATCC 33707] Length = 610 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59 +K++ ++++ FR ++ D H++ VG N VGK+ I EA+ L P R FRR Sbjct: 1 MKVRRISLTNFRGVQRGTVLLDG-HSLLVGRNSVGKSTICEALDLVLGPERLFRRP 55 >gi|307352886|ref|YP_003893937.1| chromosome segregation protein SMC [Methanoplanus petrolearius DSM 11571] gi|307156119|gb|ADN35499.1| chromosome segregation protein SMC [Methanoplanus petrolearius DSM 11571] Length = 1146 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 7 IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62 I L I F+++A ++ F T+ G NG GK+NI+++I F LS RG R Sbjct: 3 ITELEIDNFKSFAKKTKIPFYEGFTVISGPNGSGKSNIIDSILFCLALSSARGLRAEKLT 62 Query: 63 DVTRIGS 69 D+ + S Sbjct: 63 DLINLNS 69 >gi|228992921|ref|ZP_04152845.1| DNA repair protein recN [Bacillus pseudomycoides DSM 12442] gi|228998965|ref|ZP_04158547.1| DNA repair protein recN [Bacillus mycoides Rock3-17] gi|228760582|gb|EEM09546.1| DNA repair protein recN [Bacillus mycoides Rock3-17] gi|228766778|gb|EEM15417.1| DNA repair protein recN [Bacillus pseudomycoides DSM 12442] Length = 583 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%) Query: 15 FRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 RN+A SL + F T+ G+ G GK+ I++AIS L GRG A+ R G+ Sbjct: 11 IRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVRYGTEK 65 Query: 72 FFSTFARVEGM 82 A +EG+ Sbjct: 66 -----AEIEGL 71 >gi|283786951|ref|YP_003366816.1| hypothetical protein ROD_33381 [Citrobacter rodentium ICC168] gi|282950405|emb|CBG90054.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 548 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAI 47 +K+ L ISEF+N ++ + FD T+ +G NG GK+N++EA+ Sbjct: 1 MKLDNLWISEFKNLKNINIDFDEGELVTVIIGWNGAGKSNVIEAL 45 >gi|260438583|ref|ZP_05792399.1| putative ATP binding protein [Butyrivibrio crossotus DSM 2876] gi|292809174|gb|EFF68379.1| putative ATP binding protein [Butyrivibrio crossotus DSM 2876] Length = 438 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 +K+K + I +R + + FD T+ VG NG GKT IL+A++ Sbjct: 1 MKLKNIKIENYRCFKRADIDFDENITLIVGKNGAGKTAILDAVA 44 >gi|209525227|ref|ZP_03273770.1| conserved hypothetical protein [Arthrospira maxima CS-328] gi|209494412|gb|EDZ94724.1| conserved hypothetical protein [Arthrospira maxima CS-328] Length = 395 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 M+ KI++L + +R +L L T+F+G NG GK+ I + +FLS Sbjct: 1 MSTIPKIEYLKVINYRALQNLELKRITPLTVFLGPNGSGKSTIFDVFAFLS 51 >gi|319941125|ref|ZP_08015461.1| hypothetical protein HMPREF9464_00680 [Sutterella wadsworthensis 3_1_45B] gi|319805482|gb|EFW02284.1| hypothetical protein HMPREF9464_00680 [Sutterella wadsworthensis 3_1_45B] Length = 527 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L+I F+ + +L + F+ I VG+N VGK+ IL+AI L + ++ + + + Sbjct: 4 IKSLHIEGFKKFTNLDVEFNQYMNILVGENEVGKSTILDAIK-LVLNQQYKNSDKSVLKD 62 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101 + + F ++ L I I++E D S R Sbjct: 63 LFNAKQIRDFECNPSIKTLPKILIEIELELDTSNR 97 >gi|296412283|ref|XP_002835854.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629650|emb|CAZ80011.1| unnamed protein product [Tuber melanosporum] Length = 1345 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 26/48 (54%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 K+ L + F N S + F A T+ VG NG GKT I+E + + + G Sbjct: 46 KLAILGVRSFDNTRSETIQFHAPLTLIVGYNGSGKTTIIECLKYATTG 93 >gi|257888477|ref|ZP_05668130.1| DNA repair protein RecN [Enterococcus faecium 1,141,733] gi|257897148|ref|ZP_05676801.1| DNA repair protein RecN [Enterococcus faecium Com12] gi|257824531|gb|EEV51463.1| DNA repair protein RecN [Enterococcus faecium 1,141,733] gi|257833713|gb|EEV60134.1| DNA repair protein RecN [Enterococcus faecium Com12] Length = 561 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D R Sbjct: 3 LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 57 Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97 G+ + EG +++ ++L ET +D Sbjct: 58 QGAEKCILEGLFELPKQEGFSELMVELGIETDED 91 >gi|229086748|ref|ZP_04218914.1| DNA repair protein recN [Bacillus cereus Rock3-44] gi|228696569|gb|EEL49388.1| DNA repair protein recN [Bacillus cereus Rock3-44] Length = 583 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%) Query: 15 FRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 RN+A SL + F T+ G+ G GK+ I++AIS L GRG A+ R G+ Sbjct: 11 IRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVRYGTEK 65 Query: 72 FFSTFARVEGM 82 A +EG+ Sbjct: 66 -----AEIEGL 71 >gi|291532567|emb|CBL05680.1| hypothetical protein MHY_05970 [Megamonas hypermegale ART12/1] Length = 176 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 25/126 (19%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89 IF G N GKTNI+EAI F S G R + D+ G A I+ Sbjct: 26 NIFTGFNAQGKTNIIEAIYFSSLGISHRTRTEGDLILWGKDE--------------ASIN 71 Query: 90 IKLETRDDRSV----------RCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139 +K RD S+ + L N +I+ D L L + P + G + Sbjct: 72 VKFSKRDINSILKIILKKNKRKELNFNGEIIKQKD-LPGLLTMILFSPEDLMLIKGSPLL 130 Query: 140 RRRFLD 145 RRRF+D Sbjct: 131 RRRFID 136 >gi|167757406|ref|ZP_02429533.1| hypothetical protein CLORAM_02956 [Clostridium ramosum DSM 1402] gi|167703581|gb|EDS18160.1| hypothetical protein CLORAM_02956 [Clostridium ramosum DSM 1402] Length = 651 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 IKI + ++ F+ +L L FD + GDNG GKT I+ A +L Sbjct: 3 IKINQMKLTNFQGIRNLELNFDESNKSIRGDNGTGKTTIINAYYYL 48 >gi|293571742|ref|ZP_06682761.1| DNA repair protein RecN [Enterococcus faecium E980] gi|291608199|gb|EFF37502.1| DNA repair protein RecN [Enterococcus faecium E980] Length = 560 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D R Sbjct: 2 LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56 Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97 G+ + EG +++ ++L ET +D Sbjct: 57 QGAEKCILEGLFELPKQEGFSELMVELGIETDED 90 >gi|148260313|ref|YP_001234440.1| ABC transporter related [Acidiphilium cryptum JF-5] gi|146401994|gb|ABQ30521.1| ABC transporter related protein [Acidiphilium cryptum JF-5] Length = 622 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 306 LISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 L++ T AP +L+LDE + HLD D R AL R +TD + + D + D Sbjct: 438 LLALATRDAPQVLILDEPTNHLDIDAREALVRAITDFAGAVVLVTHDTHLLD 489 >gi|315282233|ref|ZP_07870687.1| DNA repair protein RecN [Listeria marthii FSL S4-120] gi|313614135|gb|EFR87825.1| DNA repair protein RecN [Listeria marthii FSL S4-120] Length = 324 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG AD R Sbjct: 2 LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD 87 G ++G+ GLA+ Sbjct: 57 HGEERL-----ELQGLFGLAE 72 >gi|257899146|ref|ZP_05678799.1| DNA repair protein RecN [Enterococcus faecium Com15] gi|257837058|gb|EEV62132.1| DNA repair protein RecN [Enterococcus faecium Com15] Length = 561 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D R Sbjct: 3 LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 57 Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97 G+ + EG +++ ++L ET +D Sbjct: 58 QGAEKCILEGLFELPKQEGFSELMVELGIETDED 91 >gi|257784654|ref|YP_003179871.1| chromosome segregation protein SMC [Atopobium parvulum DSM 20469] gi|257473161|gb|ACV51280.1| chromosome segregation protein SMC [Atopobium parvulum DSM 20469] Length = 1179 Score = 37.4 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 12/94 (12%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K L + F+++A ++VFD T+ VG NG GK+N+ +AI ++ + R + Sbjct: 3 LKSLTLKGFKSFADKTQMVFDPGLTVVVGPNGSGKSNVSDAILWVLGEQSAKMLRGQAME 62 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96 DV GS + G G+A++++ L+ D Sbjct: 63 DVIFSGSSA--------RGAVGVAEVTLVLDNSD 88 >gi|37523420|ref|NP_926797.1| hypothetical protein gll3851 [Gloeobacter violaceus PCC 7421] gi|35214424|dbj|BAC91792.1| gll3851 [Gloeobacter violaceus PCC 7421] Length = 500 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 L IS F+N ++ + F T G NGVGK+N+ +AI+FLS Sbjct: 5 LKISGFKNLVNVDVRF-GPFTCIAGANGVGKSNLFDAITFLS 45 >gi|148675530|gb|EDL07477.1| structural maintenance of chromosomes 1A, isoform CRA_b [Mus musculus] Length = 1043 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 +K + I F++Y +++ Q T +G NG GK+N+++AISF+ Sbjct: 38 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 82 >gi|117938776|gb|AAH03279.1| Smc1a protein [Mus musculus] gi|118599981|gb|AAH25590.1| Smc1a protein [Mus musculus] Length = 679 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 +K + I F++Y +++ Q T +G NG GK+N+++AISF+ Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48 >gi|331083866|ref|ZP_08332975.1| hypothetical protein HMPREF0992_01899 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403291|gb|EGG82851.1| hypothetical protein HMPREF0992_01899 [Lachnospiraceae bacterium 6_1_63FAA] Length = 242 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 24/114 (21%) Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS---YADV 64 NIS RN L F++ T F G+NG GK+ +LEAI+ +P G + S Y DV Sbjct: 25 NISVLRNLKHLE--FNSNITFFAGENGSGKSTLLEAIAVAYGFNPEGGTKNYSFETYHDV 82 Query: 65 TRIGSPSFFST-FARVEG-----MEGLADISIKLETRD----------DRSVRC 102 + + + S F + E E +++ K E D RS+ C Sbjct: 83 SELSEAIYISKGFKKTESGYFFRAESFFNVATKAEEYDAFNPNGPSYGGRSLHC 136 >gi|255318626|ref|ZP_05359857.1| chromosome segregation protein SMC [Acinetobacter radioresistens SK82] gi|262379148|ref|ZP_06072304.1| chromosome segregation protein SMC [Acinetobacter radioresistens SH164] gi|255304308|gb|EET83494.1| chromosome segregation protein SMC [Acinetobacter radioresistens SK82] gi|262298605|gb|EEY86518.1| chromosome segregation protein SMC [Acinetobacter radioresistens SH164] Length = 1149 Score = 37.4 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A S L F + VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFRDSRSAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60 Query: 61 YADVTRIGS 69 DV G+ Sbjct: 61 MQDVIFTGT 69 >gi|227550449|ref|ZP_03980498.1| DNA repair protein RecN [Enterococcus faecium TX1330] gi|227180350|gb|EEI61322.1| DNA repair protein RecN [Enterococcus faecium TX1330] Length = 560 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D R Sbjct: 2 LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56 Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97 G+ + EG +++ ++L ET +D Sbjct: 57 QGAEKCILEGLFELPKQEGFSELMVELGIETDED 90 >gi|293377373|ref|ZP_06623577.1| DNA repair protein RecN [Enterococcus faecium PC4.1] gi|292644065|gb|EFF62171.1| DNA repair protein RecN [Enterococcus faecium PC4.1] Length = 560 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D R Sbjct: 2 LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56 Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97 G+ + EG +++ ++L ET +D Sbjct: 57 QGAEKCILEGLFELPKQEGFSELMVELGIETDED 90 >gi|169841780|ref|ZP_02874889.1| chromosome segregation protein SMC [candidate division TM7 single-cell isolate TM7a] Length = 55 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 7/54 (12%) Query: 7 IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59 +K L ++ F+++A+ + FD+ T VG NG GK+NIL+AI GFRRA Sbjct: 3 LKALELTGFKSFANKTVEEFDSGITSIVGPNGSGKSNILDAIC------GFRRA 50 >gi|303230306|ref|ZP_07317071.1| hypothetical protein HMPREF9321_0955 [Veillonella atypica ACS-049-V-Sch6] gi|302515017|gb|EFL56994.1| hypothetical protein HMPREF9321_0955 [Veillonella atypica ACS-049-V-Sch6] Length = 951 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 D+ + I H S+G V + + LA A++ S PI +LD+I DED++ + ++ Sbjct: 857 DERLPIYHWSSGLADQVYLALRLALAKVFSYQVDALPI-ILDDILVRFDEDRQKSALELL 915 Query: 339 TDIG--SQIFMTGTDKSVF 355 ++G QI++ + V+ Sbjct: 916 AELGEHQQIWLFTCQQQVY 934 >gi|168181360|ref|ZP_02616024.1| acyl-coA dehydrogenase [Clostridium botulinum Bf] gi|182675483|gb|EDT87444.1| acyl-coA dehydrogenase [Clostridium botulinum Bf] Length = 645 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M N I +K L+I F+ L L F IF GDNG GKT + ++ +FL + + ++ Sbjct: 1 MVNSIFLKNLSIKNFKGIKDLNLDFGKATNIF-GDNGTGKTTVQDSFTFLLFDKDSKDST 59 Query: 61 YADV 64 DV Sbjct: 60 KFDV 63 >gi|84489889|ref|YP_448121.1| DNA double-strand break repair protein Rad50 [Methanosphaera stadtmanae DSM 3091] gi|84373208|gb|ABC57478.1| DNA double-strand break repair protein Rad50 [Methanosphaera stadtmanae DSM 3091] Length = 902 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 30/43 (69%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 I + ++ F+++ S ++ F ++ +G+NG GK++ILEAIS+ Sbjct: 3 INNIELTNFKSHKSTKIEFKKGISLILGENGAGKSSILEAISY 45 >gi|296242551|ref|YP_003650038.1| SMC domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296095135|gb|ADG91086.1| SMC domain protein [Thermosphaera aggregans DSM 11486] Length = 937 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 F ++ +VF+ VG NG GK++ILEAI + G G+R Sbjct: 16 FLSHGETSIVFEKGVNTIVGPNGAGKSSILEAIYYALTGDGWR 58 >gi|163847460|ref|YP_001635504.1| AAA ATPase [Chloroflexus aurantiacus J-10-fl] gi|222525311|ref|YP_002569782.1| AAA ATPase [Chloroflexus sp. Y-400-fl] gi|163668749|gb|ABY35115.1| AAA ATPase [Chloroflexus aurantiacus J-10-fl] gi|222449190|gb|ACM53456.1| AAA ATPase [Chloroflexus sp. Y-400-fl] Length = 570 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 15/86 (17%) Query: 268 PHRSDLIVDYCDKAIT---IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 P R ++++DY ++ T I+ G+Q+ +L LAH + ILLLDE A Sbjct: 232 PERGEIVMDYSTRSGTTLDISSSGRGQQQTLL---LLAHMAVHPGA-----ILLLDEPDA 283 Query: 325 HLDEDKRNALFRIVTD----IGSQIF 346 HL+ ++ ++ +++D +GSQI Sbjct: 284 HLEILRQRQIYTVLSDQAEKMGSQII 309 >gi|295425227|ref|ZP_06817930.1| DNA repair protein RecN [Lactobacillus amylolyticus DSM 11664] gi|295065003|gb|EFG55908.1| DNA repair protein RecN [Lactobacillus amylolyticus DSM 11664] Length = 562 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 L+I F +L++ F T+ +G+ G GK+ +++A+S L GRG + Sbjct: 5 LDIKNFAIIKALKVRFQEHMTVLIGETGAGKSILIDAVSLLMGGRGQKE 53 >gi|229006502|ref|ZP_04164148.1| DNA repair protein recN [Bacillus mycoides Rock1-4] gi|228754747|gb|EEM04146.1| DNA repair protein recN [Bacillus mycoides Rock1-4] Length = 447 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%) Query: 15 FRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 RN+A SL + F T+ G+ G GK+ I++AIS L GRG A+ R G+ Sbjct: 11 IRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVRYGTEK 65 Query: 72 FFSTFARVEGM 82 A +EG+ Sbjct: 66 -----AEIEGL 71 >gi|291524427|emb|CBK90014.1| Predicted ATP-binding protein involved in virulence [Eubacterium rectale DSM 17629] gi|291527555|emb|CBK93141.1| Predicted ATP-binding protein involved in virulence [Eubacterium rectale M104/1] Length = 457 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 KI+ L + +R + + + V + + +F G NG GKT++LEA + + Sbjct: 5 KIQELGLRNYRGFDNKKFVLNPRMNVFAGKNGSGKTSVLEAANVM 49 >gi|225620807|ref|YP_002722065.1| chromosome partition protein SmC [Brachyspira hyodysenteriae WA1] gi|225215627|gb|ACN84361.1| chromosome partition protein SmC [Brachyspira hyodysenteriae WA1] Length = 952 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 IK LN+ F+++A + F+ T+ +G NG+GK+NI+EA ++ + R Sbjct: 3 IKNLNLHGFKSFAIETNIEFNEGVTVVLGPNGIGKSNIVEAFLWVMGEQSASRLRIDSAK 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 + S F T R LA +++ L+ + R ++ I++V++ Sbjct: 63 GLESVIFHGTDTRKPS--SLAQVALTLDNK-SRWIKKYDIDEVIV 104 >gi|205372121|ref|ZP_03224937.1| ATP-dependent OLD family endonuclease [Bacillus coahuilensis m4-4] Length = 479 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 74/378 (19%), Positives = 138/378 (36%), Gaps = 80/378 (21%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 I+IK L I FR+Y S + + + + +G N VGKT +L+AI + ++ Sbjct: 3 IRIKELRIRNFRSYKSADIDL-SDNCVLIGANNVGKTTLLQAI----------QVAFVRG 51 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV---------------- 108 TR+GS + + A I + + D+++ ++ D Sbjct: 52 TRVGSDDIYINNGESLPKDRKAIIDLLIVPTDEQNNEVMEFEDKWFEHFGDLRSENPTDL 111 Query: 109 -------------VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 +++ ++ K I W P + + S R R DR++ +I + Sbjct: 112 GQFFAMRTVIAFDIVKGEYQVEKKALIEW--PKTEEVESYSKYNRNRITDRVLQSIPIFY 169 Query: 156 RRRMIDFERLMRGR----NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 D M+ R +L+ + D IE + E+ I I R ++N L+ Sbjct: 170 MDAKRDIASEMKDRYSYWGKLVKDVGLDEGEIEKIEGVLDEINDTI-IERSSVLNHLTKY 228 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 + K+S T KEE K RK+ ++R I Sbjct: 229 LS-----------KISKT-----------VNTKEESIKINPVSRKIRDLNRGIDI----- 261 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH-----ARLISNTTGFAPILLLDEISAHL 326 D ++ I++ G + + +A+ ++ + P++LL+E AHL Sbjct: 262 -TFKDQDSESFPISNHGMGTRSWITFLTLVAYIAWKNKQMKDEEIPYHPLILLEEPEAHL 320 Query: 327 DEDKRNALFRIVTDIGSQ 344 + +F + I Q Sbjct: 321 HPQAQRKIFNQINGIAGQ 338 >gi|149031309|gb|EDL86307.1| structural maintenance of chromosomes 1 like 1 (S. cerevisiae), isoform CRA_a [Rattus norvegicus] Length = 1001 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 +K + I F++Y +++ Q T +G NG GK+N+++AISF+ Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48 >gi|123967606|ref|YP_001008464.1| SMC ATPase superfamily chromosome segregation protein [Prochlorococcus marinus str. AS9601] gi|123197716|gb|ABM69357.1| putative chromosome segregation protein, SMC ATPase superfamily [Prochlorococcus marinus str. AS9601] Length = 1196 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 17/133 (12%) Query: 10 LNISEFRNYAS----LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62 +N EF N+ S +++ + T+ G NG GK+NIL+ I F L+ RG R Sbjct: 6 INQVEFENFKSFGGNVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLANSRGMR----- 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R+ P + EG +S+K + D S R + LNK + Sbjct: 61 -AERL--PDLINNSKVKEGKSSETSVSVKFNIQ-DWSPREDLPPLELEEEEIALNKGQK- 115 Query: 123 SWLVPSMDRIFSG 135 WLV R+ G Sbjct: 116 EWLVSRKLRLMPG 128 >gi|296273057|ref|YP_003655688.1| SMC domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097231|gb|ADG93181.1| SMC domain protein [Arcobacter nitrofigilis DSM 7299] Length = 789 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 L + F+ Y + L FD +G NG GK+ I EAI F G F+ Y ++ R Sbjct: 6 LKLENFKRYKTFELDFDEGLVGIIGKNGSGKSTIFEAILFALYGE-FKDRGYKEIVR 61 >gi|254435753|ref|ZP_05049260.1| hypothetical protein NOC27_2816 [Nitrosococcus oceani AFC27] gi|207088864|gb|EDZ66136.1| hypothetical protein NOC27_2816 [Nitrosococcus oceani AFC27] Length = 168 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +KI L + FR Y+++ + FD + +G N VGK+ ILEA+ Sbjct: 1 MKISSLTLKNFRAYSNVFVKFDDNFNVIIGRNDVGKSTILEAL 43 >gi|158257274|dbj|BAF84610.1| unnamed protein product [Homo sapiens] Length = 842 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 +K + I F++Y +++ Q T +G NG GK+N+++AISF+ Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48 >gi|39963673|gb|AAH64368.1| SMC1A protein [Homo sapiens] Length = 847 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 +K + I F++Y +++ Q T +G NG GK+N+++AISF+ Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48 >gi|56460803|ref|YP_156084.1| chromosome segregation ATPase, sms [Idiomarina loihiensis L2TR] gi|56179813|gb|AAV82535.1| Chromosome segregation ATPase, sms [Idiomarina loihiensis L2TR] Length = 1152 Score = 37.4 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 18/113 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + + F+++ ++ F Q T VG NG GK+N+++A+ ++ S + R + Sbjct: 1 MRLKHIKLVGFKSFVDPTKVPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60 Query: 61 YADVTRIGSPS------------FFSTFARVEG-MEGLADISIK-LETRDDRS 99 +DV GS + F ++ R++G +IS+K L TRD +S Sbjct: 61 MSDVIFNGSSARKPVSQASVELVFDNSSGRIQGEYAAFNEISVKRLVTRDGQS 113 >gi|314998044|ref|ZP_07862932.1| DNA repair protein RecN [Enterococcus faecium TX0133a01] gi|313587886|gb|EFR66731.1| DNA repair protein RecN [Enterococcus faecium TX0133a01] Length = 562 Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D R Sbjct: 2 LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56 Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97 G+ + EG +++ ++L ET +D Sbjct: 57 QGAEKCVLEGLFELPKQEGFSELMVELGIETDED 90 >gi|297618563|ref|YP_003706668.1| SMC domain-containing protein [Methanococcus voltae A3] gi|297618623|ref|YP_003706728.1| SMC domain-containing protein [Methanococcus voltae A3] gi|297377540|gb|ADI35695.1| SMC domain protein [Methanococcus voltae A3] gi|297377600|gb|ADI35755.1| SMC domain protein [Methanococcus voltae A3] Length = 1113 Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 DLIVD I +++ S GEQ V + + L A I + ++LDE +A+LDED+R Sbjct: 1011 DLIVD----GIPVSNMSGGEQVAVALALRLGIANAICDN---MECIILDEPTAYLDEDRR 1063 Query: 332 NALFRIVTDI 341 L I + I Sbjct: 1064 RNLLTIFSSI 1073 >gi|257879358|ref|ZP_05659011.1| DNA repair protein RecN [Enterococcus faecium 1,230,933] gi|257881776|ref|ZP_05661429.1| DNA repair protein RecN [Enterococcus faecium 1,231,502] gi|257885170|ref|ZP_05664823.1| DNA repair protein RecN [Enterococcus faecium 1,231,501] gi|257890184|ref|ZP_05669837.1| DNA repair protein RecN [Enterococcus faecium 1,231,410] gi|257893512|ref|ZP_05673165.1| DNA repair protein RecN [Enterococcus faecium 1,231,408] gi|260558800|ref|ZP_05830989.1| DNA repair protein RecN [Enterococcus faecium C68] gi|261206510|ref|ZP_05921210.1| DNA repair protein RecN [Enterococcus faecium TC 6] gi|257813586|gb|EEV42344.1| DNA repair protein RecN [Enterococcus faecium 1,230,933] gi|257817434|gb|EEV44762.1| DNA repair protein RecN [Enterococcus faecium 1,231,502] gi|257821022|gb|EEV48156.1| DNA repair protein RecN [Enterococcus faecium 1,231,501] gi|257826544|gb|EEV53170.1| DNA repair protein RecN [Enterococcus faecium 1,231,410] gi|257829891|gb|EEV56498.1| DNA repair protein RecN [Enterococcus faecium 1,231,408] gi|260075259|gb|EEW63572.1| DNA repair protein RecN [Enterococcus faecium C68] gi|260079220|gb|EEW66911.1| DNA repair protein RecN [Enterococcus faecium TC 6] Length = 561 Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D R Sbjct: 3 LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 57 Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97 G+ + EG +++ ++L ET +D Sbjct: 58 QGAEKCVLEGLFELPKQEGFSELMVELGIETDED 91 >gi|213402735|ref|XP_002172140.1| conserved hypothetical protein [Schizosaccharomyces japonicus yFS275] gi|212000187|gb|EEB05847.1| conserved hypothetical protein [Schizosaccharomyces japonicus yFS275] Length = 1331 Score = 37.4 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 5/57 (8%) Query: 3 NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 +R+ ++ L + F++YA +++ FD + VG NG GK+N+++A+ F+ GFR Sbjct: 131 SRLVVRELRLHNFKSYAGTQIIGPFDYSFSAIVGPNGSGKSNVIDALLFVF---GFR 184 >gi|320534862|ref|ZP_08035279.1| RecF/RecN/SMC protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320132960|gb|EFW25491.1| RecF/RecN/SMC protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 395 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L I F+++AS L + T VG NG GK+N+++A++++ +G R S Sbjct: 1 MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 60 Query: 61 YADVTRIGSPS 71 ADV G+ S Sbjct: 61 MADVIFAGAGS 71 >gi|154508959|ref|ZP_02044601.1| hypothetical protein ACTODO_01475 [Actinomyces odontolyticus ATCC 17982] gi|153798593|gb|EDN81013.1| hypothetical protein ACTODO_01475 [Actinomyces odontolyticus ATCC 17982] Length = 1191 Score = 37.4 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 25/174 (14%) Query: 7 IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K L + F+++AS L + T VG NG GK+N+++A++++ R R A Sbjct: 3 LKNLTLRGFKSFASATTLALEPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQMA 62 Query: 63 DVTRIGSPSFFSTFAR------VEGMEGLADISIKLETRDDRSVRC----LQINDVVIRV 112 DV G+ S + R ++ +GL DI T R IN R+ Sbjct: 63 DVIFAGT-SGRAALGRAQVDLTIDNTDGLLDIEYSEVTISRTLFRGGGSEYSINGTPARL 121 Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158 +D + + + + +D I S ERR F++ + +HRRR Sbjct: 122 LDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEPAGVL--KHRRR 173 >gi|261417074|ref|YP_003250757.1| SMC domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373530|gb|ACX76275.1| SMC domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326883|gb|ADL26084.1| conserved hypothetical protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 427 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 13/89 (14%) Query: 5 IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL---------SP-G 53 +++K L I FR +L L F +++ +F G NG GKT +L A+ FL SP G Sbjct: 1 MRVKKLRIENFRGIKNLDLDFSNSKMVVFAGINGAGKTTVLVAMQFLFSWYVARLKSPKG 60 Query: 54 RGFRRASYADVTRIGSPSFFSTFARVEGM 82 +G S D+T G P F VE + Sbjct: 61 KGL-SLSDCDITN-GEPYAFIEIEVVEKI 87 >gi|239906239|ref|YP_002952979.1| putative ABC transporter ATP-binding protein [Desulfovibrio magneticus RS-1] gi|239796104|dbj|BAH75093.1| putative ABC transporter ATP-binding protein [Desulfovibrio magneticus RS-1] Length = 666 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 13/78 (16%) Query: 276 DYCDKAITIAHGSTGEQ-KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 DY D+ + G GE+ ++VL G+F A A L+LDE + HLD + R AL Sbjct: 438 DYWDRRVFELSG--GEKSRLVLAGLFSARANF----------LVLDEPTNHLDLESREAL 485 Query: 335 FRIVTDIGSQIFMTGTDK 352 R + + I M D+ Sbjct: 486 VRALAEYSGTILMVAHDR 503 >gi|226326917|ref|ZP_03802435.1| hypothetical protein PROPEN_00777 [Proteus penneri ATCC 35198] gi|225204754|gb|EEG87108.1| hypothetical protein PROPEN_00777 [Proteus penneri ATCC 35198] Length = 185 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 2/112 (1%) Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317 D M T +G H++DL + + S G+ K+++ + LA + G + Sbjct: 67 DKMLAYTSLGAHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQGEYFTRKNGQRCLY 125 Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368 LLD+ ++ LD +R L + +Q+F++ T V D L+ ++ + Sbjct: 126 LLDDFASELDASRRQLLAERLKSTQAQVFVSAITQGQVKDMLDVNSRLFSVE 177 >gi|148652279|ref|YP_001279372.1| SMC domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571363|gb|ABQ93422.1| condensin subunit Smc [Psychrobacter sp. PRwf-1] Length = 1280 Score = 37.0 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 15/101 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 +++K L +S F+++A+ F +H T VG NG GK+N+++AI ++ S + R Sbjct: 1 MRLKSLKLSGFKSFAN-PTTFSFRHGITAIVGPNGCGKSNVIDAIRWVLGESSAKQLRGG 59 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRS 99 + +DV G+ + + + LA + + E T+D+++ Sbjct: 60 AMSDVIFAGTQN--------KAAKSLASVELTFEHTQDEQT 92 >gi|284036391|ref|YP_003386321.1| ATPase [Spirosoma linguale DSM 74] gi|283815684|gb|ADB37522.1| ATPase-like protein [Spirosoma linguale DSM 74] Length = 426 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 9 FLNISEFRNYASLR-LVFDAQH-TIFVGDNGVGKTNILEAISFLSPG 53 FLN E +N+ S++ L D + +F+G VGK+NILEA+ L G Sbjct: 64 FLNWVEIKNFKSIKDLRLDCKRVNVFIGKPNVGKSNILEALGLLGAG 110 >gi|190574391|ref|YP_001972236.1| putative conjugative transposon DNA recombination protein [Stenotrophomonas maltophilia K279a] gi|190012313|emb|CAQ45939.1| putative conjugative transposon DNA recombination protein [Stenotrophomonas maltophilia K279a] Length = 526 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + I F+++ L L +A + VGDN VGK+ +LEAI + G+ R ++ Sbjct: 1 MPIERIVIDNFKSFRHLDLPLNAHMNLVVGDNEVGKSTLLEAIHAVVTGQLHGRNLAYEL 60 Query: 65 TR 66 TR Sbjct: 61 TR 62 >gi|123504794|ref|XP_001328834.1| SMC family, C-terminal domain containing protein [Trichomonas vaginalis G3] gi|121911782|gb|EAY16611.1| SMC family, C-terminal domain containing protein [Trichomonas vaginalis G3] Length = 1202 Score = 37.0 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%) Query: 4 RIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 R+ IK + + F++YA L+ + F T VG NG GK+N+++A+ F+ Sbjct: 7 RLIIKSIQVENFKSYAGLKDIGPFHPSFTSIVGPNGSGKSNVIDAMLFV 55 >gi|117619753|ref|YP_855768.1| chromosome segregation protein SMC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561160|gb|ABK38108.1| chromosome segregation protein SMC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1124 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ R+ +A T VG NG GK+N+++A+ ++ S R R + Sbjct: 1 MRLKLIKLAGFKSFVEPTRIELNADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGEN 60 Query: 61 YADVTRIGS 69 DV GS Sbjct: 61 MTDVIFNGS 69 >gi|293568309|ref|ZP_06679633.1| DNA repair protein RecN [Enterococcus faecium E1071] gi|291589021|gb|EFF20845.1| DNA repair protein RecN [Enterococcus faecium E1071] Length = 560 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D R Sbjct: 2 LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56 Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97 G+ + EG +++ ++L ET +D Sbjct: 57 QGAEKCVLEGLFELPKQEGFSELMVELGIETDED 90 >gi|69244722|ref|ZP_00602986.1| DNA repair protein RecN [Enterococcus faecium DO] gi|258615764|ref|ZP_05713534.1| DNA repair protein RecN [Enterococcus faecium DO] gi|289565420|ref|ZP_06445869.1| DNA repair protein RecN [Enterococcus faecium D344SRF] gi|293553176|ref|ZP_06673813.1| DNA repair protein RecN [Enterococcus faecium E1039] gi|293560483|ref|ZP_06676975.1| DNA repair protein RecN [Enterococcus faecium E1162] gi|294614720|ref|ZP_06694622.1| DNA repair protein RecN [Enterococcus faecium E1636] gi|294618982|ref|ZP_06698477.1| DNA repair protein RecN [Enterococcus faecium E1679] gi|294621594|ref|ZP_06700759.1| DNA repair protein RecN [Enterococcus faecium U0317] gi|314937880|ref|ZP_07845196.1| DNA repair protein RecN [Enterococcus faecium TX0133a04] gi|314941371|ref|ZP_07848264.1| DNA repair protein RecN [Enterococcus faecium TX0133C] gi|314950130|ref|ZP_07853416.1| DNA repair protein RecN [Enterococcus faecium TX0082] gi|314951329|ref|ZP_07854383.1| DNA repair protein RecN [Enterococcus faecium TX0133A] gi|314992840|ref|ZP_07858241.1| DNA repair protein RecN [Enterococcus faecium TX0133B] gi|68196313|gb|EAN10742.1| DNA repair protein RecN [Enterococcus faecium DO] gi|289162749|gb|EFD10600.1| DNA repair protein RecN [Enterococcus faecium D344SRF] gi|291592458|gb|EFF24065.1| DNA repair protein RecN [Enterococcus faecium E1636] gi|291594643|gb|EFF26025.1| DNA repair protein RecN [Enterococcus faecium E1679] gi|291598759|gb|EFF29811.1| DNA repair protein RecN [Enterococcus faecium U0317] gi|291602586|gb|EFF32801.1| DNA repair protein RecN [Enterococcus faecium E1039] gi|291605631|gb|EFF35073.1| DNA repair protein RecN [Enterococcus faecium E1162] gi|313592644|gb|EFR71489.1| DNA repair protein RecN [Enterococcus faecium TX0133B] gi|313596546|gb|EFR75391.1| DNA repair protein RecN [Enterococcus faecium TX0133A] gi|313599794|gb|EFR78637.1| DNA repair protein RecN [Enterococcus faecium TX0133C] gi|313642738|gb|EFS07318.1| DNA repair protein RecN [Enterococcus faecium TX0133a04] gi|313643571|gb|EFS08151.1| DNA repair protein RecN [Enterococcus faecium TX0082] Length = 560 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D R Sbjct: 2 LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56 Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97 G+ + EG +++ ++L ET +D Sbjct: 57 QGAEKCVLEGLFELPKQEGFSELMVELGIETDED 90 >gi|91202091|emb|CAJ75151.1| hypothetical protein kuste4389 [Candidatus Kuenenia stuttgartiensis] Length = 574 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59 +K+ + I FR SL L D T+ +G+N GK+ +LEAI L+ G G RR Sbjct: 1 MKLIEIKIENFRGVRSLHLPLDGL-TVLIGENNTGKSTVLEAIRLVLTRGFGVRRG 55 >gi|186914887|gb|ACC95210.1| ABC transporter [uncultured bacterium] Length = 191 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Query: 5 IKIKFLNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRA 59 +++ L++S F A+LR V + T +G NG GKT++ +IS F P RG R Sbjct: 40 LEVDSLHLS-FGGVAALRDVSFQVPEGSITTVIGPNGAGKTSLFNSISGFYKPQRGTIRY 98 Query: 60 SYADVTRIGSP 70 AD++R+ P Sbjct: 99 RGADISRLSPP 109 >gi|295110067|emb|CBL24020.1| hypothetical protein [Ruminococcus obeum A2-162] Length = 190 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVT 65 I+ +RN + F+ +G+N +GKTNILE I+ L+ G+ F + D+T Sbjct: 9 INNYRNLTGKTITFNDTLNFLIGENNIGKTNILELINICLAIGK-FAETDFMDIT 62 >gi|300869835|ref|YP_003784706.1| hypothetical protein BP951000_0198 [Brachyspira pilosicoli 95/1000] gi|300687534|gb|ADK30205.1| hypothetical ABC transporter ATP binding protein [Brachyspira pilosicoli 95/1000] Length = 603 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 34/67 (50%) Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 VL G +A L+ T A +L+LDE + HLD + AL + D G IF T D++ Sbjct: 402 VLSGGEMARLSLLCAITQCADVLILDEPTNHLDFETVEALANSLRDYGGTIFFTSHDRTF 461 Query: 355 FDSLNET 361 L +T Sbjct: 462 ASLLADT 468 >gi|300866185|ref|ZP_07110902.1| Exonuclease SbcC [Oscillatoria sp. PCC 6506] gi|300335819|emb|CBN56062.1| Exonuclease SbcC [Oscillatoria sp. PCC 6506] Length = 1044 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68 L + F +Y L F HT + G NG GKT++LEAI++ G R AS D+ IG Sbjct: 6 LTLKNFLSYRDATLDFRGLHTACICGPNGAGKTSLLEAIAWAIWG-NCRTASEDDIIHIG 64 >gi|218246354|ref|YP_002371725.1| ATPase-like protein [Cyanothece sp. PCC 8801] gi|218166832|gb|ACK65569.1| ATPase-like protein [Cyanothece sp. PCC 8801] Length = 131 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 13/93 (13%) Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70 NI F++ + L F TI VG N GK+N LEA++FLS ++ + G+P Sbjct: 9 NIQNFKSLGDVTLNF-RDLTILVGANSSGKSNCLEALNFLS-----------EIVKEGTP 56 Query: 71 SFFS-TFARVEGMEGLADISIKLETRDDRSVRC 102 S T ++ ++ I+I + +DD + Sbjct: 57 PSDSDTIKKILKIDANTGINIAITIQDDNEKKA 89 >gi|77166477|ref|YP_345002.1| hypothetical protein Noc_3031 [Nitrosococcus oceani ATCC 19707] gi|254435139|ref|ZP_05048646.1| hypothetical protein NOC27_2202 [Nitrosococcus oceani AFC27] gi|76884791|gb|ABA59472.1| hypothetical protein Noc_3031 [Nitrosococcus oceani ATCC 19707] gi|207088250|gb|EDZ65522.1| hypothetical protein NOC27_2202 [Nitrosococcus oceani AFC27] Length = 70 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAI 47 +++K L I +++N L FD I FVG NG GK+N+ EA+ Sbjct: 1 MRLKSLYIGQYKNLLDFSLSFDGSSFIDVFVGKNGTGKSNLFEAL 45 >gi|241894937|ref|ZP_04782233.1| DNA repair and genetic recombination protein [Weissella paramesenteroides ATCC 33313] gi|241871655|gb|EER75406.1| DNA repair and genetic recombination protein [Weissella paramesenteroides ATCC 33313] Length = 563 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 10/92 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I F L + F+ T+ G+ G GK+ I++A+ L+ GRG + D R Sbjct: 2 LQELSIQNFAIIPKLNISFEPGMTVLTGETGAGKSIIIDAVGLLTGGRGSQ-----DYIR 56 Query: 67 IGS-PSFFSTFARVEGMEGLA----DISIKLE 93 G+ + VE L+ D+ IKLE Sbjct: 57 EGTDTAVLQGLIDVEPNTALSAILDDLGIKLE 88 >gi|15615339|ref|NP_243642.1| DNA repair and genetic recombination [Bacillus halodurans C-125] gi|11134697|sp|Q9K974|RECN_BACHD RecName: Full=DNA repair protein recN; AltName: Full=Recombination protein N gi|10175397|dbj|BAB06495.1| DNA repair and genetic recombination [Bacillus halodurans C-125] Length = 565 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I +F L + FD T+ G+ G GK+ I++AI L GRG A+ R G Sbjct: 5 LSIKQFAIIEQLTVSFDKGLTVLTGETGAGKSIIIDAIGLLLGGRG-----SAEYVRYGE 59 Query: 70 PSFFSTFARVEGM 82 A +EG+ Sbjct: 60 KR-----AEIEGL 67 >gi|168029501|ref|XP_001767264.1| condensin complex component SMC1 [Physcomitrella patens subsp. patens] gi|162681519|gb|EDQ67945.1| condensin complex component SMC1 [Physcomitrella patens subsp. patens] Length = 1247 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 N +I+ L I F++Y ++V ++ T +G NG GK+N+++AISF+ Sbjct: 6 NPGRIERLEIENFKSYKGHQIVGPFKNFTAIIGPNGAGKSNLMDAISFV 54 >gi|195165821|ref|XP_002023737.1| GL19756 [Drosophila persimilis] gi|194105871|gb|EDW27914.1| GL19756 [Drosophila persimilis] Length = 232 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I F++Y +V FD +H + VG NG GK+N AI F+ Sbjct: 3 IKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFV 48 >gi|116492590|ref|YP_804325.1| DNA repair ATPase [Pediococcus pentosaceus ATCC 25745] gi|116102740|gb|ABJ67883.1| DNA replication and repair protein RecN [Pediococcus pentosaceus ATCC 25745] Length = 558 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I +F L + F+ T+ G+ G GK+ I++A+ L+ GRG AD R G+ Sbjct: 5 LSIKDFAIIEKLDVSFNQGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SADFVRTGA 59 >gi|167767258|ref|ZP_02439311.1| hypothetical protein CLOSS21_01777 [Clostridium sp. SS2/1] gi|167711233|gb|EDS21812.1| hypothetical protein CLOSS21_01777 [Clostridium sp. SS2/1] gi|291559431|emb|CBL38231.1| hypothetical protein CL2_12570 [butyrate-producing bacterium SSC/2] Length = 517 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63 +KI + I FR Y + T+ VG N +GK+ ILEA+ F + G+G + D Sbjct: 1 MKIDSMKIKNFRGYKDETEIKLNDLTVLVGKNDIGKSTILEALDIFFNDGKGVIKLDKTD 60 Query: 64 VT 65 V Sbjct: 61 VN 62 >gi|332638234|ref|ZP_08417097.1| Barmotin [Weissella cibaria KACC 11862] Length = 1185 Score = 37.0 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 37/170 (21%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+K L IS F+++A ++ F T VG NG GK+NI+EAI ++ +G R Sbjct: 1 MKLKTLEISGFKSFADRTKIEFMPGITGVVGPNGSGKSNIIEAIRWVMGEQSAKGLRGDK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD---------RSVRCL-------- 103 +DV G S + R A++SI + D R R L Sbjct: 61 MSDVI-FGGTSQRAPLNR-------AEVSITFDNTDRYLNSDYSEIRITRALYRNGDSKY 112 Query: 104 QINDVVIRVVDELNKHL-----RISWLVPSMDR---IFSGLSMERRRFLD 145 QIN +R+ D + R S+ + S R IFS ERR ++ Sbjct: 113 QINGTTVRLKDIHELFMDSGLGRESFSIISQGRVESIFSAKPEERRSIIE 162 >gi|330978667|gb|EGH77948.1| SMC domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 576 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 2/39 (5%) Query: 14 EFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL 50 +F+N ++ + FD H T+ +G NG GK+N+LEA++ + Sbjct: 18 QFKNLKNVTIDFDQDHWVTVVIGWNGTGKSNVLEALAII 56 >gi|328956989|ref|YP_004374375.1| factor for double strand breaks DNA repair and genetic recombination [Carnobacterium sp. 17-4] gi|328673313|gb|AEB29359.1| factor for double strand breaks DNA repair and genetic recombination [Carnobacterium sp. 17-4] Length = 572 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L I +F L L F+ T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELTIKDFAIIQDLNLSFNRGMTVLTGETGAGKSIIIDAVGLLAGGRG 50 >gi|284923721|emb|CBG36818.1| putative prophage ATP/GTP binding protein [Escherichia coli 042] Length = 478 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 27/43 (62%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 I++K +I + Y + L+F+ + TI + +NG GKT ++ A+ Sbjct: 3 IELKKFSIKKLYGYKDIHLIFNKKSTIIIAENGAGKTTLINAL 45 >gi|295687767|ref|YP_003591460.1| ABC transporter-like protein [Caulobacter segnis ATCC 21756] gi|295429670|gb|ADG08842.1| ABC transporter related protein [Caulobacter segnis ATCC 21756] Length = 308 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 114/272 (41%), Gaps = 52/272 (19%) Query: 1 MTNRIKIKFLNISEFRNYASLRLV-FDAQH-TIF--VGDNGVGKTNILEAI-SFLSPGRG 55 MT+ I +K LN + + +L+ + D + IF +G NG GKT ++ I ++P +G Sbjct: 1 MTSIISVKGLNKTYASGHQALKTIDLDIRRGEIFALLGPNGAGKTTLISIICGIVNPSQG 60 Query: 56 FRRASYADV--------TRIG-------SPSFFSTFARVEGMEGLADISIKLETRDD--- 97 A DV T+IG + +F S +A V GL + R+D Sbjct: 61 TVTADGHDVVRDYRAARTKIGLVPQELHTDAFESVWATVSFSRGLFG-----KPRNDALI 115 Query: 98 -RSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR---IFSGLSMERR-RFLDRMVFAID 152 + +R L + D K +I L M R I LS E FLD +D Sbjct: 116 EKILRELSLWD---------KKDSKIMALSGGMKRRVMIAKALSHEPTILFLDEPTAGVD 166 Query: 153 PRHRRRMIDFERLMR--GRNRLLTEGYFDSSWCSSIEAQMAE-LGVKINIARVEMINALS 209 RR M + R +R G +LT Y + + +MA+ +GV IN + ++ + Sbjct: 167 VELRRDMWEMVRKLRESGVTIILTTHYIEEA------EEMADRIGV-INKGEIILVEDKT 219 Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 L+ + +K+ H+K LT G D Sbjct: 220 VLMRKLGKKQLTVHLKEPLTALPAGLVDPHLT 251 >gi|51327185|gb|AAH80185.1| SMC1A protein [Homo sapiens] Length = 417 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 +K + I F++Y +++ Q T +G NG GK+N+++AISF+ Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48 >gi|162452485|ref|YP_001614852.1| hypothetical protein sce4209 [Sorangium cellulosum 'So ce 56'] gi|161163067|emb|CAN94372.1| hypothetical protein sce4209 [Sorangium cellulosum 'So ce 56'] Length = 418 Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 3/109 (2%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY 61 +K++ L I +FR A L F + +G NG GKT +LE IS + S R + Sbjct: 2 LKLRRLRIEKFRGVAPGTELRFSDGLNVLLGQNGTGKTTLLELISMVVRSDFSSLAREEF 61 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 A + P + V E + K R D R + DV I Sbjct: 62 AVEYELAVPEEATVTVAVSNKEKTGFVGTKDRPRIDLPERWFPVADVTI 110 >gi|327438874|dbj|BAK15239.1| predicted ATP-dependent endonuclease of the OLD family [Solibacillus silvestris StLB046] Length = 537 Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 25/41 (60%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +K L I ++ + L FD +I +G+NG GK+ +LEAI Sbjct: 3 LKKLKIYNYKKFEDFSLDFDNNFSIMIGNNGAGKSTLLEAI 43 >gi|260587864|ref|ZP_05853777.1| ABC transporter, ATP-binding protein [Blautia hansenii DSM 20583] gi|260542129|gb|EEX22698.1| ABC transporter, ATP-binding protein [Blautia hansenii DSM 20583] Length = 242 Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 24/114 (21%) Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS---YADV 64 NIS RN L F++ T F G+NG GK+ +LEAI+ +P G + S Y DV Sbjct: 25 NISVLRNLKHLE--FNSNITFFAGENGSGKSTLLEAIAVAYGFNPEGGTKNYSFETYHDV 82 Query: 65 TRIGSPSFFST-FARVEG-----MEGLADISIKLETRD----------DRSVRC 102 + + + S F + E E +++ K E D RS+ C Sbjct: 83 SELSEAIYISKGFKKPESGYFFRAESFFNVATKAEEYDAFNPNGPSYGGRSLHC 136 >gi|53713065|ref|YP_099057.1| hypothetical protein BF1776 [Bacteroides fragilis YCH46] gi|52215930|dbj|BAD48523.1| conserved hypothetical protein [Bacteroides fragilis YCH46] Length = 515 Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYADVT 65 I+ + + FR Y + V + T FVG N +GK+ ILEA+ F + G+G D+ Sbjct: 3 IRSVTLKNFRGYRNETTVLFSNLTTFVGRNDIGKSTILEALDIFFNEGKGCISLDKEDIN 62 Query: 66 RIGS 69 + S Sbjct: 63 KRAS 66 >gi|218245499|ref|YP_002370870.1| SMC domain-containing protein [Cyanothece sp. PCC 8801] gi|218165977|gb|ACK64714.1| SMC domain protein [Cyanothece sp. PCC 8801] Length = 439 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 25/44 (56%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 +KI L + FR + Q T+F+GDN GKT +L+A++ Sbjct: 1 MKIDQLEVENFRGFKKEVFKLSEQFTVFIGDNCTGKTAVLDALA 44 >gi|86610360|ref|YP_479122.1| chromosome segregation protein SMC [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558902|gb|ABD03859.1| putative chromosome segregation protein SMC [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1188 Score = 37.0 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Query: 7 IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62 IK + ++ F+++ S L T+ G NG GK+NIL+ I F LS RG R Sbjct: 3 IKRIELTRFKSFGSTTSLPLLPGFTVISGPNGSGKSNILDGILFALGLSSSRGMRAERLL 62 Query: 63 DVTRIGS 69 D+ GS Sbjct: 63 DLVHSGS 69 >gi|328542327|ref|YP_004302436.1| hypothetical protein SL003B_0707 [polymorphum gilvum SL003B-26A1] gi|326412074|gb|ADZ69137.1| hypothetical protein SL003B_0707 [Polymorphum gilvum SL003B-26A1] Length = 294 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 +K+K I +R+ L+ Q T +G N GK+N+L A+ L+P GF+ Sbjct: 1 MKLKQFRIQNYRSITDSGLIHVGQLTSLLGRNESGKSNLLRALHSLNPSDGFK 53 >gi|319784114|ref|YP_004143590.1| ATPase AAA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170002|gb|ADV13540.1| AAA ATPase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 260 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%) Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS------PGRGFRRASYADV 64 N+ FR + L F TI VG+NG GK+ +LEAI L+ G+G+R ++ Sbjct: 34 NLPLFRGH-DFELEFTTPITIIVGENGTGKSTLLEAIGALAGYDEAGGGKGYRPVDHSSA 92 Query: 65 TRIGSPSFFSTF 76 + +TF Sbjct: 93 IDKSGAALANTF 104 >gi|241895654|ref|ZP_04782950.1| SMC structural maintenance of chromosomes partitioning protein [Weissella paramesenteroides ATCC 33313] gi|241871021|gb|EER74772.1| SMC structural maintenance of chromosomes partitioning protein [Weissella paramesenteroides ATCC 33313] Length = 1184 Score = 37.0 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+K L I+ F+++A ++ F T VG NG GK+NI+EAI ++ +G R Sbjct: 1 MKLKTLEITGFKSFAERTKIEFMPGITGVVGPNGSGKSNIIEAIRWVMGEQSAKGLRGDK 60 Query: 61 YADV 64 ADV Sbjct: 61 MADV 64 >gi|166366712|ref|YP_001658985.1| ATPase [Microcystis aeruginosa NIES-843] gi|166089085|dbj|BAG03793.1| ATPase [Microcystis aeruginosa NIES-843] Length = 426 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 29/46 (63%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 ++IK + + +R SL + F Q +F+G NG GK+ IL++++ + Sbjct: 1 MRIKSIKLDNYRGVVSLNIDFHRQLNVFIGVNGAGKSTILDSLAIM 46 >gi|157412408|ref|YP_001483274.1| SMC ATPase superfamily chromosome segregation protein [Prochlorococcus marinus str. MIT 9215] gi|157386983|gb|ABV49688.1| putative chromosome segregation protein, SMC ATPase superfamily [Prochlorococcus marinus str. MIT 9215] Length = 1196 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 15/94 (15%) Query: 10 LNISEFRNYAS----LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62 +N EF N+ S +++ + T+ G NG GK+NIL+ I F L+ RG R Sbjct: 6 INQVEFENFKSFGGNVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLANSRGMR----- 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96 R+ P + EG +S+K +D Sbjct: 61 -AERL--PDLINNSKVKEGKSSETSVSVKFNIQD 91 >gi|296123944|ref|YP_003631722.1| SMC domain protein [Planctomyces limnophilus DSM 3776] gi|296016284|gb|ADG69523.1| SMC domain protein [Planctomyces limnophilus DSM 3776] Length = 653 Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62 +KI + I FR++ + FD +T FVG NG GK+ IL A++ FR +S + Sbjct: 1 MKISQVRIQNFRSFRDETVHFD-NYTCFVGSNGSGKSTILMALNVF-----FRNSSSSVT 54 Query: 63 DVTRIGSPSF 72 DV +G+ F Sbjct: 55 DVVNLGAEDF 64 >gi|256838545|ref|ZP_05544055.1| SMC domain-containing protein [Parabacteroides sp. D13] gi|256739464|gb|EEU52788.1| SMC domain-containing protein [Parabacteroides sp. D13] Length = 693 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + IS FRN+ + F + +G N GK+N+L AI + Y+D R Sbjct: 15 IKEIKISNFRNFRDASVPFHEGVNVIIGHNNTGKSNLLRAIGLV--------LGYSDGRR 66 Query: 67 IGSPSFF 73 +G+ F Sbjct: 67 LGTCDLF 73 >gi|254495860|ref|ZP_05108771.1| chromosome segregation SMC protein [Legionella drancourtii LLAP12] gi|254354926|gb|EET13550.1| chromosome segregation SMC protein [Legionella drancourtii LLAP12] Length = 1164 Score = 36.6 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 18/113 (15%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L ++ F+++ +V F +Q VG NG GK+NI++A+ ++ S R R S Sbjct: 1 MHLKQLKLAGFKSFVDPTVVYFPSQLVAVVGPNGCGKSNIIDAVRWVMGESSARNLRGES 60 Query: 61 YADVTRIGSPS------------FFSTFARVEG-MEGLADISIK-LETRDDRS 99 DV GS + F ++ R+ G +IS+K + TRD S Sbjct: 61 MTDVIFNGSSNRKPVGQASVELVFDNSLGRLTGPFASYGEISVKRVVTRDGDS 113 >gi|328354661|emb|CCA41058.1| Structural maintenance of chromosomes protein 2 [Pichia pastoris CBS 7435] Length = 1168 Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 +K++ L I F++YA+ ++ +D+Q G NG GK+NIL+AI F+ Sbjct: 1 MKVEELIIDGFKSYATRTVISGWDSQFNAITGLNGSGKSNILDAICFV 48 >gi|221194733|ref|ZP_03567790.1| chromosome segregation protein SMC [Atopobium rimae ATCC 49626] gi|221185637|gb|EEE18027.1| chromosome segregation protein SMC [Atopobium rimae ATCC 49626] Length = 1182 Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 12/94 (12%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 +K L + F+++A +VFD T+ VG NG GK+N+ +AI ++ + R + Sbjct: 3 LKALTLKGFKSFADKTHMVFDPGLTVVVGPNGSGKSNVSDAILWVLGEQSAKMLRGQAME 62 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96 DV GS + G G+A++++ L+ D Sbjct: 63 DVIFSGSSA--------RGAVGVAEVTLVLDNAD 88 >gi|33338074|gb|AAQ13659.1|AF176781_1 MSTP142 [Homo sapiens] Length = 205 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 +K + I F++Y +++ Q T +G NG GK+N+++AISF+ Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48 >gi|308050129|ref|YP_003913695.1| chromosome segregation protein SMC [Ferrimonas balearica DSM 9799] gi|307632319|gb|ADN76621.1| chromosome segregation protein SMC [Ferrimonas balearica DSM 9799] Length = 1152 Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 18/130 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ ++ F Q T VG NG GK+N+++A+ ++ S + R + Sbjct: 1 MRLKQIKLAGFKSFVDPTKVPFPDQMTAIVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGM-EGLADISIKLE-TRDDRSVRCLQIN 106 DV GS F + R+EG A+I++K + TRD +S L N Sbjct: 61 MTDVIFNGSSGRKPVSVASVELVFDNQAGRLEGQYASYAEIAVKRQVTRDGQSNYFLNGN 120 Query: 107 DVVIRVVDEL 116 R + +L Sbjct: 121 KCRRRDITDL 130 >gi|163915543|gb|AAI57408.1| Unknown (protein for IMAGE:6319183) [Xenopus laevis] Length = 360 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I FR+Y +V F ++H + VG NG GK+N AI F+ Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48 >gi|330830680|ref|YP_004393632.1| chromosome segregation protein SMC [Aeromonas veronii B565] gi|328805816|gb|AEB51015.1| Chromosome segregation protein SMC [Aeromonas veronii B565] Length = 1124 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ R+ A T VG NG GK+N+++A+ ++ S R R + Sbjct: 1 MRLKLIKLAGFKSFVEPTRIELSADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGEN 60 Query: 61 YADVTRIGS 69 DV GS Sbjct: 61 MTDVIFNGS 69 >gi|321251833|ref|XP_003192194.1| cohesin complex subunit and chromosome segregation protein [Cryptococcus gattii WM276] gi|317458662|gb|ADV20407.1| Cohesin complex subunit and chromosome segregation protein, putative [Cryptococcus gattii WM276] Length = 1214 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 32/48 (66%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISFL 50 + ++ L + +F++Y ++++ DA +G NG GK+N+++AISF+ Sbjct: 1 MPLQRLELYDFKSYRGKQVIYFGDAPFVSVIGPNGAGKSNLMDAISFV 48 >gi|170285139|gb|AAI61245.1| Unknown (protein for IMAGE:8931875) [Xenopus (Silurana) tropicalis] Length = 429 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I FR+Y +V F ++H + VG NG GK+N AI F+ Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48 >gi|254572810|ref|XP_002493514.1| Component of the condensin complex, essential SMC chromosomal ATPase family member [Pichia pastoris GS115] gi|238033313|emb|CAY71335.1| Component of the condensin complex, essential SMC chromosomal ATPase family member [Pichia pastoris GS115] Length = 1133 Score = 36.6 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 +K++ L I F++YA+ ++ +D+Q G NG GK+NIL+AI F+ Sbjct: 1 MKVEELIIDGFKSYATRTVISGWDSQFNAITGLNGSGKSNILDAICFV 48 >gi|171679495|ref|XP_001904694.1| hypothetical protein [Podospora anserina S mat+] gi|170939373|emb|CAP64601.1| unnamed protein product [Podospora anserina S mat+] Length = 1587 Score = 36.6 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 4 RIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 RI I +L ++ F++YA + V F A + VG NG GK+N+++++ F+ GFR Sbjct: 258 RIVITYLVLTNFKSYAGKQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFR 310 >gi|32450573|gb|AAH54173.1| Unknown (protein for IMAGE:6875131) [Xenopus laevis] Length = 348 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I FR+Y +V F ++H + VG NG GK+N AI F+ Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48 >gi|324991598|gb|EGC23531.1| RecF/RecN/SMC N domain protein [Streptococcus sanguinis SK353] Length = 887 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++I+ + I F+N +++ F T+FVG NG GKT I +AI G+ RR + +D Sbjct: 1 MRIQKILIKNFKNVKGTKVIDFQDNVTLFVGPNGFGKTTIFDAIELSLTGK-IRRITESD 59 Query: 64 VT 65 T Sbjct: 60 YT 61 >gi|225467200|ref|XP_002262966.1| PREDICTED: hypothetical protein, partial [Vitis vinifera] Length = 603 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 87 DISIKLETRDDRSVRCLQINDVVIRVVDELN-KHLRISWLVPSMDRIFSGLSMERRRFLD 145 D SIKLE D RSV L+ + ++ IS+ V + R S S+E + + Sbjct: 378 DSSIKLEKNDGRSVPQLEYASAIGSLMYAAQCTRADISFAVSKLSRFISNPSVEHWKAIG 437 Query: 146 RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 R++ + + + F+ + + EGY D+SW SS+E ++ G Sbjct: 438 RVLGYLK---NTKELSFQY---SKFPAILEGYSDASWISSVEDNLSTTG 480 >gi|218673272|ref|ZP_03522941.1| hypothetical protein RetlG_17611 [Rhizobium etli GR56] Length = 524 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAIS 48 +++ L I F+N + + FD T+ +G+NG GK+N++EA++ Sbjct: 1 MRVDSLKIRSFKNLTDITIDFDEGELSTVIIGENGTGKSNVIEALA 46 >gi|74216698|dbj|BAE37767.1| unnamed protein product [Mus musculus] Length = 353 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I FR+Y +V F ++H + VG NG GK+N AI F+ Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48 >gi|330908687|gb|EGH37201.1| putative ABC oligo/dipeptide transport, ATP-binding protein [Escherichia coli AA86] Length = 577 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 9/113 (7%) Query: 1 MTNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRR 58 M N+I K+K +N+ +FR ++ + F ++ T+ G NG K+ IL I+ S + F + Sbjct: 1 MANQITKLKNINVVKFRGLKNINIEFGSRLTVICGKNGTSKSTILGIIAQIFSFTKDFTK 60 Query: 59 ASYADVTR---IGSPSFFSTFAR----VEGMEGLADISIKLETRDDRSVRCLQ 104 D+T+ + + SF S F+ E + + +K+ D S + L+ Sbjct: 61 NPETDLTQYKTLTNGSFKSAFSEHFRLSEQFDVPGSMDVKISVYDGASNKHLE 113 >gi|303389012|ref|XP_003072739.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC 50506] gi|303301881|gb|ADM11379.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC 50506] Length = 1159 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 10 LNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVTR 66 + + F++YA ++ FD + T VG NG GK+NI++A++F L G RA+ Sbjct: 6 VEVENFKSYAGFHIIGPFD-RFTCIVGPNGSGKSNIMDAVTFCLGIGSKHLRANNIRSLI 64 Query: 67 IGSPSFFSTFARVEG 81 G S S +EG Sbjct: 65 NGGSSHASVALHIEG 79 >gi|74177551|dbj|BAB31016.3| unnamed protein product [Mus musculus] Length = 301 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 +K + I F++Y +++ Q T +G NG GK+N+++AISF+ Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48 >gi|45692|emb|CAA32895.1| unnamed protein product [Pseudomonas putida] Length = 99 Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVR 101 + + + F V+ E G +++ + E + + ++R Sbjct: 61 IQYEQAA-CTVFGEVQLTEGGTSNLGVSRERQGEFTIR 97 >gi|330817980|ref|YP_004361685.1| hypothetical protein bgla_1g31210 [Burkholderia gladioli BSR3] gi|327370373|gb|AEA61729.1| hypothetical protein bgla_1g31210 [Burkholderia gladioli BSR3] Length = 395 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 ++I+F+ I FR + + RL + + VG NG GKT + + SFL Sbjct: 1 MQIEFIEIKNFRLFRNTRLTNIPRLCVLVGANGTGKTTLFDVFSFL 46 >gi|261403240|ref|YP_003247464.1| SMC domain protein [Methanocaldococcus vulcanius M7] gi|261370233|gb|ACX72982.1| SMC domain protein [Methanocaldococcus vulcanius M7] Length = 1001 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 29/43 (67%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 IK + ++ F+++A+ ++ FD +G+NG GK++I EA+ F Sbjct: 3 IKEIKMNNFKSHANSKITFDKGIVAIIGENGSGKSSIFEAVFF 45 >gi|213648786|ref|ZP_03378839.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 63 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 23/43 (53%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 I +FRN + L VG NG GKT++LEAI L GR Sbjct: 8 IKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGR 50 >gi|191168024|ref|ZP_03029825.1| putative ATP binding protein [Escherichia coli B7A] gi|190901962|gb|EDV61710.1| putative ATP binding protein [Escherichia coli B7A] Length = 488 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 12/91 (13%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 N I++ ++ Y + + + T+FV +NG GKT IL AI L Sbjct: 5 NNYPIEYFRMTGVHGYKDITMKMKGKTTVFVSENGAGKTTILNAIRLLLE---------Q 55 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLE 93 D T + F S F ++ G E ++ IK E Sbjct: 56 DFTNLMRIDFKSIFIKILGHE---EVEIKNE 83 >gi|171058643|ref|YP_001790992.1| hypothetical protein Lcho_1960 [Leptothrix cholodnii SP-6] gi|170776088|gb|ACB34227.1| conserved hypothetical protein [Leptothrix cholodnii SP-6] Length = 522 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + F+ + +L L FD + I VG N GK+++L+A+ + AS + V Sbjct: 2 VTIRRLVLKNFKRFRTLELEFDGELNILVGGNEAGKSSVLQAMEIV------LSASRSKV 55 Query: 65 TRIGSPSFFSTFARVEGMEG 84 IG + F+ E + G Sbjct: 56 ESIGIEALFNADCIAEFLAG 75 >gi|115565211|emb|CAL49464.1| chondroitin sulfate proteoglycan 6 (bamacan) [Xenopus (Silurana) tropicalis] Length = 458 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I FR+Y +V F ++H + VG NG GK+N AI F+ Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48 >gi|47937470|gb|AAH72043.1| LOC432330 protein [Xenopus laevis] Length = 457 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I FR+Y +V F ++H + VG NG GK+N AI F+ Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48 >gi|304314688|ref|YP_003849835.1| DNA double-strand repair ATPase Rad50 [Methanothermobacter marburgensis str. Marburg] gi|302588147|gb|ADL58522.1| predicted DNA double-strand repair ATPase Rad50 [Methanothermobacter marburgensis str. Marburg] Length = 837 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + R+Y S + FD T+F GD G GKT +L AI F G G +R Sbjct: 3 INSLELRNIRSYESGTVEFDDGVTLFEGDIGSGKTTLLLAIEFALFGLGDQRGDSLLRAT 62 Query: 67 IGSPSFFSTFARVEGME 83 S S TF V+G E Sbjct: 63 ANSGSVKLTFT-VDGAE 78 >gi|282897784|ref|ZP_06305782.1| hypothetical protein CRD_00705 [Raphidiopsis brookii D9] gi|281197324|gb|EFA72222.1| hypothetical protein CRD_00705 [Raphidiopsis brookii D9] Length = 302 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 29/47 (61%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 N +++ +I+ + ++++FD + TI + +NG GKT IL A+ + Sbjct: 16 NSSQLRSFSINRLFGFKDIKILFDKEATILIAENGAGKTTILNALYY 62 >gi|257469919|ref|ZP_05634011.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185] gi|317064148|ref|ZP_07928633.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185] gi|313689824|gb|EFS26659.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185] Length = 932 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 36/67 (53%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI +++ +R + L + FD+ + +G+NG GK++ILEAI + R + + Sbjct: 1 MKINRIHLENYRIHDKLDVEFDSGINLLLGENGKGKSSILEAIGYALFDSELRGGNQREA 60 Query: 65 TRIGSPS 71 + G S Sbjct: 61 IKYGKKS 67 >gi|229173819|ref|ZP_04301359.1| hypothetical protein bcere0006_29170 [Bacillus cereus MM3] gi|228609669|gb|EEK66951.1| hypothetical protein bcere0006_29170 [Bacillus cereus MM3] Length = 592 Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +KI+++ I FRN+ + + F A+ T+ +G N +GKTN++ A+ L Sbjct: 1 MKIEWIKIKGFRNFDNETINF-AEQTLIIGANDIGKTNLIYALRLL 45 >gi|75907635|ref|YP_321931.1| hypothetical protein Ava_1413 [Anabaena variabilis ATCC 29413] gi|75701360|gb|ABA21036.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413] Length = 396 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 27/49 (55%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 ++I +K + I FR + S L + + VG N GKT+ILEAI L Sbjct: 18 ASKIMLKSIRIENFRGFHSFELQQLGRVNLLVGKNNTGKTSILEAIQLL 66 >gi|74180294|dbj|BAE24449.1| unnamed protein product [Mus musculus] Length = 284 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I FR+Y +V F ++H + VG NG GK+N AI F+ Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48 >gi|327474502|gb|EGF19907.1| recombination protein F [Streptococcus sanguinis SK408] Length = 75 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAIS-FLSP 52 IKI L IS FR++ + D IF G N VGKTN+L AI+ F +P Sbjct: 2 IKISRLKISNFRSFTNEENTIDELDVLNIFAGRNNVGKTNVLRAINLFFNP 52 >gi|221214436|ref|ZP_03587407.1| DNA repair protein RecN [Burkholderia multivorans CGD1] gi|221165693|gb|EED98168.1| DNA repair protein RecN [Burkholderia multivorans CGD1] Length = 549 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 29/43 (67%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++ L+I +F A+L L FDA T+F G+ G GK+ +++A++ Sbjct: 2 LRHLSIRDFVIVAALDLEFDAGFTVFSGETGAGKSILIDALAL 44 >gi|221200969|ref|ZP_03574009.1| DNA repair protein RecN [Burkholderia multivorans CGD2M] gi|221206579|ref|ZP_03579592.1| DNA repair protein RecN [Burkholderia multivorans CGD2] gi|221173888|gb|EEE06322.1| DNA repair protein RecN [Burkholderia multivorans CGD2] gi|221178819|gb|EEE11226.1| DNA repair protein RecN [Burkholderia multivorans CGD2M] Length = 549 Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 29/43 (67%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++ L+I +F A+L L FDA T+F G+ G GK+ +++A++ Sbjct: 2 LRHLSIRDFVIVAALDLEFDAGFTVFSGETGAGKSILIDALAL 44 >gi|161525810|ref|YP_001580822.1| DNA repair protein RecN [Burkholderia multivorans ATCC 17616] gi|189349469|ref|YP_001945097.1| DNA repair protein [Burkholderia multivorans ATCC 17616] gi|160343239|gb|ABX16325.1| DNA repair protein RecN [Burkholderia multivorans ATCC 17616] gi|189333491|dbj|BAG42561.1| DNA repair protein [Burkholderia multivorans ATCC 17616] Length = 549 Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 29/43 (67%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++ L+I +F A+L L FDA T+F G+ G GK+ +++A++ Sbjct: 2 LRHLSIRDFVIVAALDLEFDAGFTVFSGETGAGKSILIDALAL 44 >gi|226313175|ref|YP_002773069.1| hypothetical protein BBR47_35880 [Brevibacillus brevis NBRC 100599] gi|226096123|dbj|BAH44565.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 418 Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 KIK I++ Y ++ + FD+ I VG+NGVGKT IL + + Sbjct: 4 KIKKFRINKLFGYKNVNIDFDSGVMILVGENGVGKTTILNVLYY 47 >gi|158312240|ref|YP_001504748.1| daunorubicin resistance ABC transporter ATPase subunit [Frankia sp. EAN1pec] gi|158107645|gb|ABW09842.1| daunorubicin resistance ABC transporter ATPase subunit [Frankia sp. EAN1pec] Length = 318 Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 24/169 (14%) Query: 32 FVGDNGVGKTNILEAIS-FLSPGRGFRRASYADVTR--------IGSPSFFSTFARV--- 79 +G NG GKT I+ +S L+PG G R + DV R IG FS + Sbjct: 38 LLGPNGAGKTTIVNILSALLTPGDGEIRVAGFDVRREPAGVRAAIGVTGQFSAIDELLTG 97 Query: 80 -EGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELNKHLRI--SWLVPSMDRIFS 134 E + +AD++ DR + ++ R +VD ++ + + +D + Sbjct: 98 RENLRLMADLA-----HLDRVTATAAVTVMLERFDLVDAADRRAQTYSGGMKRRLDLAMT 152 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRM--IDFERLMRGRNRLLTEGYFDSS 181 ++ R FLD +DPR RR + I E++ G LLT Y D + Sbjct: 153 LIARPRLIFLDEPTAGLDPRSRRDLWAIVREQVADGVTVLLTTQYLDEA 201 >gi|149040398|gb|EDL94436.1| chondroitin sulfate proteoglycan 6, isoform CRA_a [Rattus norvegicus] Length = 696 Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I FR+Y +V F ++H + VG NG GK+N AI F+ Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48 >gi|317052010|ref|YP_004113126.1| chromosome segregation protein SMC [Desulfurispirillum indicum S5] gi|316947094|gb|ADU66570.1| chromosome segregation protein SMC [Desulfurispirillum indicum S5] Length = 1150 Score = 36.6 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 14/95 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 +K K L IS F+++ S R V D + T VG NG GK+NI +AI ++ + R A Sbjct: 1 MKFKRLEISGFKSF-SERSVLDFRDGITAIVGPNGCGKSNISDAIRWVMGEQRAKDLRGA 59 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLET 94 S ADV G+ + +A++ +KLE+ Sbjct: 60 SMADVIFAGT--------QRRSPAQMAEVKLKLES 86 >gi|281206402|gb|EFA80589.1| structural maintenance of chromosome protein [Polysphondylium pallidum PN500] Length = 1324 Score = 36.6 bits (83), Expect = 7.2, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 2/51 (3%) Query: 2 TNRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 T R+ IK + + F++YA +++ F T +G NG GK+N+++A+ F+ Sbjct: 66 TRRLMIKMMELENFKSYAGKQVIGPFHKCFTSVIGPNGSGKSNVIDAMLFV 116 >gi|229552479|ref|ZP_04441204.1| DNA repair protein RecN [Lactobacillus rhamnosus LMS2-1] gi|258539849|ref|YP_003174348.1| DNA repair protein RecN [Lactobacillus rhamnosus Lc 705] gi|229314216|gb|EEN80189.1| DNA repair protein RecN [Lactobacillus rhamnosus LMS2-1] gi|257151525|emb|CAR90497.1| DNA repair protein RecN [Lactobacillus rhamnosus Lc 705] Length = 567 Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I +F +L L F + T G+ G GK+ I++A+ L+ GR Sbjct: 2 LQELAIHDFAIIDNLALSFQSGMTALTGETGAGKSIIIDAVGLLAGGR------------ 49 Query: 67 IGSPSFFSTFARVEGMEGLAD 87 GS F T A +EGL D Sbjct: 50 -GSVDFIRTGASKASLEGLFD 69 >gi|255994064|ref|ZP_05427199.1| putative RecF/RecN/SMC N domain protein [Eubacterium saphenum ATCC 49989] gi|255993732|gb|EEU03821.1| putative RecF/RecN/SMC N domain protein [Eubacterium saphenum ATCC 49989] Length = 1187 Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 12/96 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L+I F+++A +++ FD T VG NG GK+N+ +A+ ++ R R Sbjct: 1 MRLKSLSIKGFKSFADPVKIDFDEGITCIVGPNGSGKSNVSDALRWVFGEQSARTLRGYK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96 DV F T R + +GLA++++ ++ D Sbjct: 61 MEDVI------FAGTEKRRK--QGLAEVTVVIDNSD 88 >gi|167740054|ref|ZP_02412828.1| DNA repair protein RecN [Burkholderia pseudomallei 14] Length = 107 Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F A+L L FD+ T+F G+ G GK+ +++A++ R + A V R Sbjct: 2 LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114 GS G ADIS + T DR R L +D V+ RVVD Sbjct: 57 TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96 >gi|229823203|ref|ZP_04449272.1| hypothetical protein GCWU000282_00501 [Catonella morbi ATCC 51271] gi|229787369|gb|EEP23483.1| hypothetical protein GCWU000282_00501 [Catonella morbi ATCC 51271] Length = 580 Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 11/101 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ LNI F + L + T+ G+ G GK+ I++A+S L RG D+ R Sbjct: 2 LRSLNIENFAIIDHVTLDLEMGMTVLAGETGAGKSIIIDALSLLMGSRGTN-----DLIR 56 Query: 67 IGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVR 101 G+ F + A + LAD ++LE ++D +R Sbjct: 57 QGADKLVVEGLFSMSPAPAPLLAQLADFGLELEDQEDLIIR 97 >gi|319791344|ref|YP_004152984.1| hypothetical protein Varpa_0653 [Variovorax paradoxus EPS] gi|315593807|gb|ADU34873.1| hypothetical protein Varpa_0653 [Variovorax paradoxus EPS] Length = 521 Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 29/47 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 I+ L +S F+ + +L L FD + + +GDN GK+++L A+ + G Sbjct: 4 IERLVLSNFKKFDNLELEFDPELNLLIGDNEAGKSSVLLALELVMSG 50 >gi|199597158|ref|ZP_03210590.1| DNA repair ATPase [Lactobacillus rhamnosus HN001] gi|258508672|ref|YP_003171423.1| DNA repair protein RecN [Lactobacillus rhamnosus GG] gi|199591962|gb|EDZ00037.1| DNA repair ATPase [Lactobacillus rhamnosus HN001] gi|257148599|emb|CAR87572.1| DNA repair protein RecN [Lactobacillus rhamnosus GG] gi|259649978|dbj|BAI42140.1| DNA repair protein RecN [Lactobacillus rhamnosus GG] Length = 567 Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I +F +L L F + T G+ G GK+ I++A+ L+ GR Sbjct: 2 LQELAIHDFAIIDNLALSFQSGMTALTGETGAGKSIIIDAVGLLAGGR------------ 49 Query: 67 IGSPSFFSTFARVEGMEGLAD 87 GS F T A +EGL D Sbjct: 50 -GSVDFIRTGASKASLEGLFD 69 >gi|320590923|gb|EFX03364.1| nuclear condensin complex subunit [Grosmannia clavigera kw1407] Length = 1522 Score = 36.2 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 4 RIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 RI I +L ++ F++YA + V F A + VG NG GK+N+++++ F+ GFR Sbjct: 250 RIVIAYLILTNFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFR 302 >gi|162453150|ref|YP_001615517.1| hypothetical protein sce4874 [Sorangium cellulosum 'So ce 56'] gi|161163732|emb|CAN95037.1| hypothetical protein sce4874 [Sorangium cellulosum 'So ce 56'] Length = 345 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE-AISFLS 51 I+ L++ +F ++ LVF +FVG+NG GKT+ L+ A S L+ Sbjct: 2 IRSLHVKDFTVFSEAELVFGEHLNVFVGENGTGKTHALKLAYSLLA 47 >gi|288931956|ref|YP_003436016.1| SMC domain protein [Ferroglobus placidus DSM 10642] gi|288894204|gb|ADC65741.1| SMC domain protein [Ferroglobus placidus DSM 10642] Length = 885 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%) Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 Y + I+ S GEQ V + + LA + +S+ A ++ DE + ++DE++R R Sbjct: 791 YMGREISFQQMSGGEQVVAALSVRLALLKFLSS----AGVVFFDEPTQNMDEERRRNFAR 846 Query: 337 IVTDIGS--QIFMTGTDKSVFDSLNETAKFMRISN 369 +T+I QIF+ D F+ + E +R N Sbjct: 847 QITNIKGFRQIFVITHD-DTFEEMVENVIRVRKEN 880 >gi|12851088|dbj|BAB28937.1| unnamed protein product [Mus musculus] gi|26353126|dbj|BAC40193.1| unnamed protein product [Mus musculus] Length = 199 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 +K + I F++Y +++ Q T +G NG GK+N+++AISF+ Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48 >gi|326693699|ref|ZP_08230704.1| chromosome partition protein [Leuconostoc argentinum KCTC 3773] Length = 1184 Score = 36.2 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+K L IS F+++A ++ F T VG NG GK+NI+EAI ++ + R Sbjct: 1 MKLKSLEISGFKSFADKTVIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60 Query: 61 YADV 64 AD+ Sbjct: 61 MADI 64 >gi|21902529|ref|NP_663774.1| Bartomin [Rattus norvegicus] gi|21717411|dbj|BAC02935.1| barmotin [Rattus norvegicus] Length = 1184 Score = 36.2 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+K L IS F+++A ++ F T VG NG GK+NI+EAI ++ + R Sbjct: 1 MKLKSLEISGFKSFADKTVIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60 Query: 61 YADV 64 AD+ Sbjct: 61 MADI 64 >gi|148669759|gb|EDL01706.1| mCG20864 [Mus musculus] Length = 657 Score = 36.2 bits (82), Expect = 7.7, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I FR+Y +V F ++H + VG NG GK+N AI F+ Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48 >gi|315042508|ref|XP_003170630.1| chromosomes protein 1 structural maintenance [Arthroderma gypseum CBS 118893] gi|311344419|gb|EFR03622.1| chromosomes protein 1 structural maintenance [Arthroderma gypseum CBS 118893] Length = 1289 Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 M I+++ N ++ + +L L DA T +G NG GK+N ++AISF+ Sbjct: 1 MGKLIRLELFNFKSYKGHHTL-LFGDAYFTSIIGPNGSGKSNSMDAISFV 49 >gi|194336900|ref|YP_002018694.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309377|gb|ACF44077.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 422 Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +KI+ + + FR L L FDA T+ NG GKT +++A++ L Sbjct: 1 MKIRTVTLKNFRGIEELCLPFDAGLTVIAAVNGGGKTTVVDALAML 46 >gi|119511431|ref|ZP_01630542.1| hypothetical protein N9414_16459 [Nodularia spumigena CCY9414] gi|119463896|gb|EAW44822.1| hypothetical protein N9414_16459 [Nodularia spumigena CCY9414] Length = 391 Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 25/42 (59%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 ++ L I +FR +L L Q I VG N GKT++LEAIS Sbjct: 4 LESLTIHQFRGLQNLELKDTGQINILVGVNNAGKTSVLEAIS 45 >gi|326332586|ref|ZP_08198854.1| hypothetical protein NBCG_04030 [Nocardioidaceae bacterium Broad-1] gi|325949587|gb|EGD41659.1| hypothetical protein NBCG_04030 [Nocardioidaceae bacterium Broad-1] Length = 635 Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 29/57 (50%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +++ + I+ FR A D T FVG N GKT +L+A+++ + G R Y Sbjct: 1 MRVSRVEITGFRRLARTGTSIDGPLTAFVGFNEAGKTTLLDALTWFTDGGAISRIDY 57 >gi|15642383|ref|NP_232016.1| hypothetical protein VC2386 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591075|ref|ZP_01678387.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153820043|ref|ZP_01972710.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|229507550|ref|ZP_04397055.1| ATP binding protein [Vibrio cholerae BX 330286] gi|229519390|ref|ZP_04408833.1| ATP binding protein [Vibrio cholerae RC9] gi|229607056|ref|YP_002877704.1| ATP binding protein [Vibrio cholerae MJ-1236] gi|254849507|ref|ZP_05238857.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255746939|ref|ZP_05420884.1| ATP binding protein [Vibrio cholera CIRS 101] gi|262161518|ref|ZP_06030628.1| ATP binding protein [Vibrio cholerae INDRE 91/1] gi|298500254|ref|ZP_07010059.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9656958|gb|AAF95529.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|53148487|dbj|BAD52080.1| hypothetical nucleotide-binding protein [Vibrio cholerae] gi|121547080|gb|EAX57216.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126509413|gb|EAZ72007.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|229344079|gb|EEO09054.1| ATP binding protein [Vibrio cholerae RC9] gi|229355055|gb|EEO19976.1| ATP binding protein [Vibrio cholerae BX 330286] gi|229369711|gb|ACQ60134.1| ATP binding protein [Vibrio cholerae MJ-1236] gi|254845212|gb|EET23626.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255735341|gb|EET90741.1| ATP binding protein [Vibrio cholera CIRS 101] gi|262028829|gb|EEY47483.1| ATP binding protein [Vibrio cholerae INDRE 91/1] gi|297540947|gb|EFH77001.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 540 Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 1 MTNRIKIKFLNIS--EFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAIS 48 + N KI+ NIS +++ ++ L+ ++T I +G+NG GK+ ILE+IS Sbjct: 56 IINNAKIRLRNISLYDYKKFSKLKFTSSEKNTTIIIGNNGSGKSTILESIS 106 >gi|312136567|ref|YP_004003904.1| smc domain protein [Methanothermus fervidus DSM 2088] gi|311224286|gb|ADP77142.1| SMC domain protein [Methanothermus fervidus DSM 2088] Length = 865 Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 +K+K L + R+Y +L F+ T+F GD G GK+ IL AI F G G Sbjct: 1 MKLKSLELKNIRSYKYEKLEFNDGVTLFEGDIGSGKSTILLAIEFALFGLG 51 >gi|153823341|ref|ZP_01976008.1| conserved hypothetical protein [Vibrio cholerae B33] gi|229512254|ref|ZP_04401733.1| hypothetical protein VCE_003666 [Vibrio cholerae B33] gi|126519148|gb|EAZ76371.1| conserved hypothetical protein [Vibrio cholerae B33] gi|229352219|gb|EEO17160.1| hypothetical protein VCE_003666 [Vibrio cholerae B33] Length = 540 Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 1 MTNRIKIKFLNIS--EFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAIS 48 + N KI+ NIS +++ ++ L+ ++T I +G+NG GK+ ILE+IS Sbjct: 56 IINNAKIRLRNISLYDYKKFSKLKFTSSEKNTTIIIGNNGSGKSTILESIS 106 >gi|74180915|dbj|BAE25655.1| unnamed protein product [Mus musculus] Length = 723 Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I FR+Y +V F ++H + VG NG GK+N AI F+ Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48 >gi|67536854|ref|XP_662201.1| hypothetical protein AN4597.2 [Aspergillus nidulans FGSC A4] gi|40741209|gb|EAA60399.1| hypothetical protein AN4597.2 [Aspergillus nidulans FGSC A4] gi|259482571|tpe|CBF77179.1| TPA: nuclear condensin complex subunit Smc4, putative (AFU_orthologue; AFUA_2G02170) [Aspergillus nidulans FGSC A4] Length = 1476 Score = 36.2 bits (82), Expect = 8.1, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 5/57 (8%) Query: 3 NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 +R+ I L ++ F++YA ++V F A + VG NG GK+N+++A+ F+ GFR Sbjct: 243 SRLMITTLVLNNFKSYAGKQVVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFR 296 >gi|195126481|ref|XP_002007699.1| GI13090 [Drosophila mojavensis] gi|193919308|gb|EDW18175.1| GI13090 [Drosophila mojavensis] Length = 307 Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 41/217 (18%) Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMI 160 L N ++ + L +H WL+P++ + LS FL ++ H Sbjct: 79 LGPNGALMHCAEYLEQHFE-DWLLPALRK----LSATHNYFLFDCPGQVELYTHHTAMAR 133 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN-IARVEM--INALSS--LIMEY 215 FERL R R L+T DS +CS +A L + +N + R+ + +N LS L+ ++ Sbjct: 134 VFERLERERYNLVTVNLIDSHYCSEPAKFIATLLMALNTMMRMSLPHVNVLSKADLLRKH 193 Query: 216 VQKENFP--------HIKLSLTGFLDG-------KFDQSFCALKEEYAK---KLFDGRKM 257 K +F +K L D K +++ C++ E+YA KL D Sbjct: 194 ESKLHFNVDYYTDVLDLKYLLEKLDDDPTMRKYQKLNEAICSMVEDYALVSFKLLDAFST 253 Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 DSM R + ++ DKA + + EQ V Sbjct: 254 DSMLR-----------LRNHIDKANGYVYKAGEEQTV 279 >gi|260946677|ref|XP_002617636.1| hypothetical protein CLUG_03080 [Clavispora lusitaniae ATCC 42720] gi|238849490|gb|EEQ38954.1| hypothetical protein CLUG_03080 [Clavispora lusitaniae ATCC 42720] Length = 1170 Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 +K++ L I F++YA+ +V +D Q G NG GK+NIL+AI F+ Sbjct: 1 MKVEELIIDGFKSYATRTVVTGWDPQFNAITGLNGSGKSNILDAICFV 48 >gi|300214354|gb|ADJ78770.1| DNA repair protein [Lactobacillus salivarius CECT 5713] Length = 555 Score = 36.2 bits (82), Expect = 8.3, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L+I +F +++ F + T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRG 50 >gi|313672243|ref|YP_004050354.1| DNA repair protein recn [Calditerrivibrio nitroreducens DSM 19672] gi|312938999|gb|ADR18191.1| DNA repair protein RecN [Calditerrivibrio nitroreducens DSM 19672] Length = 547 Score = 36.2 bits (82), Expect = 8.3, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +KFL++ F + + F IF G+ G GKT I+ A+ L G RA + D T+ Sbjct: 2 LKFLSVQNFSVIEDIEIEFSDGLNIFTGETGAGKTVIINAVKIL-VGEKLSRAFFRDETK 60 >gi|255725234|ref|XP_002547546.1| structural maintenance of chromosome 2 [Candida tropicalis MYA-3404] gi|240135437|gb|EER34991.1| structural maintenance of chromosome 2 [Candida tropicalis MYA-3404] Length = 1171 Score = 36.2 bits (82), Expect = 8.3, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 +K++ L I F++YA+ ++ +D+Q G NG GK+NIL+AI F+ Sbjct: 1 MKVEELIIDGFKSYAARTVISGWDSQFNAITGLNGSGKSNILDAICFV 48 >gi|303316059|ref|XP_003068034.1| SMC family, C-terminal domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240107710|gb|EER25889.1| SMC family, C-terminal domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 1286 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 M I+++ N ++ + +L L DA T +G NG GK+N ++AISF+ Sbjct: 1 MGKLIRLELFNFKSYKGHHTL-LFGDAYFTSIIGPNGSGKSNSMDAISFV 49 >gi|90961515|ref|YP_535431.1| DNA repair protein [Lactobacillus salivarius UCC118] gi|227890602|ref|ZP_04008407.1| DNA repair protein [Lactobacillus salivarius ATCC 11741] gi|301300974|ref|ZP_07207139.1| DNA repair protein RecN [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820709|gb|ABD99348.1| DNA repair protein [Lactobacillus salivarius UCC118] gi|227867540|gb|EEJ74961.1| DNA repair protein [Lactobacillus salivarius ATCC 11741] gi|300851441|gb|EFK79160.1| DNA repair protein RecN [Lactobacillus salivarius ACS-116-V-Col5a] Length = 555 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 30/49 (61%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++ L+I +F +++ F + T+ G+ G GK+ I++A+ L+ GRG Sbjct: 2 LQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRG 50 >gi|291480605|gb|ADE06380.1| structural maintenance of chromosomes 1-like 1 [Microtus arvalis] gi|291480607|gb|ADE06381.1| structural maintenance of chromosomes 1-like 1 [Microtus levis] Length = 104 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50 +K + I F++Y +++ Q T +G NG GK+N+++AISF+ Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48 >gi|257866577|ref|ZP_05646230.1| chromosome partition protein SMC [Enterococcus casseliflavus EC30] gi|257872907|ref|ZP_05652560.1| chromosome partition protein SMC [Enterococcus casseliflavus EC10] gi|257800535|gb|EEV29563.1| chromosome partition protein SMC [Enterococcus casseliflavus EC30] gi|257807071|gb|EEV35893.1| chromosome partition protein SMC [Enterococcus casseliflavus EC10] Length = 1192 Score = 36.2 bits (82), Expect = 8.5, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 +K + I+ F+++A R V D +H T VG NG GK+NI EAI ++ + R Sbjct: 3 LKRIEIAGFKSFAD-RTVIDFEHRVTAVVGPNGSGKSNITEAIRWVLGEQSAKNLRGGKM 61 Query: 62 ADVTRIGS 69 DV GS Sbjct: 62 PDVIFAGS 69 >gi|213408381|ref|XP_002174961.1| conserved hypothetical protein [Schizosaccharomyces japonicus yFS275] gi|212003008|gb|EEB08668.1| conserved hypothetical protein [Schizosaccharomyces japonicus yFS275] Length = 1173 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 +KI+ L I F++YA ++ +D+Q G NG GK+NIL+AI F+ Sbjct: 1 MKIEELIIDGFKSYAVRTVISGWDSQFNAITGLNGSGKSNILDAICFV 48 >gi|91793868|ref|YP_563519.1| chromosome segregation protein SMC [Shewanella denitrificans OS217] gi|91715870|gb|ABE55796.1| Chromosome segregation protein SMC [Shewanella denitrificans OS217] Length = 1138 Score = 36.2 bits (82), Expect = 8.5, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + ++ F+ Q + +G NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKQIKLAGFKSFVDVTKIPFEQQLSAIIGPNGCGKSNIIDAVRWVLGESSAKNLRGDS 60 Query: 61 YADVTRIGS 69 DV GS Sbjct: 61 MTDVIFNGS 69 >gi|147673450|ref|YP_001217887.1| hypothetical protein VC0395_A1963 [Vibrio cholerae O395] gi|5830765|emb|CAB54591.1| putative ATP binding protein [Vibrio cholerae] gi|146315333|gb|ABQ19872.1| conserved hypothetical protein [Vibrio cholerae O395] Length = 265 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 3/49 (6%) Query: 3 NRIKIKFLNIS--EFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAIS 48 N KI+ NIS +++ ++ L+ ++T I +G+NG GK+ ILE+IS Sbjct: 58 NNAKIRLRNISLYDYKKFSKLKFTSSEKNTTIIIGNNGSGKSTILESIS 106 >gi|148544276|ref|YP_001271646.1| AAA ATPase [Lactobacillus reuteri DSM 20016] gi|184153654|ref|YP_001841995.1| hypothetical protein LAR_0999 [Lactobacillus reuteri JCM 1112] gi|227364993|ref|ZP_03849033.1| AAA ATPase [Lactobacillus reuteri MM2-3] gi|325681695|ref|ZP_08161215.1| AAA ATPase [Lactobacillus reuteri MM4-1A] gi|148531310|gb|ABQ83309.1| AAA ATPase [Lactobacillus reuteri DSM 20016] gi|183224998|dbj|BAG25515.1| hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227069963|gb|EEI08346.1| AAA ATPase [Lactobacillus reuteri MM2-3] gi|324979007|gb|EGC15954.1| AAA ATPase [Lactobacillus reuteri MM4-1A] Length = 537 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 10 LNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 L + F+++ L ++ F+ I VG+NGVGKT +++A+ + G F Sbjct: 6 LYLYNFKSFKGLQKITFNRNKNILVGNNGVGKTTVIQALRLILKGSSFE 54 >gi|270159077|ref|ZP_06187733.1| chromosome partition protein SMC [Legionella longbeachae D-4968] gi|289166087|ref|YP_003456225.1| chromosome partition protein smc [Legionella longbeachae NSW150] gi|269987416|gb|EEZ93671.1| chromosome partition protein SMC [Legionella longbeachae D-4968] gi|288859260|emb|CBJ13194.1| putative chromosome partition protein smc [Legionella longbeachae NSW150] Length = 1164 Score = 36.2 bits (82), Expect = 8.6, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L ++ F+++ +V F +Q VG NG GK+NI++A+ ++ S R R S Sbjct: 1 MHLKQLKLAGFKSFVDPTVVHFPSQLVAVVGPNGCGKSNIIDAVRWVMGESSARNLRGES 60 Query: 61 YADVTRIGS 69 DV GS Sbjct: 61 MTDVIFNGS 69 >gi|253584165|ref|ZP_04861363.1| nuclease sbcCD subunit C [Fusobacterium varium ATCC 27725] gi|251834737|gb|EES63300.1| nuclease sbcCD subunit C [Fusobacterium varium ATCC 27725] Length = 448 Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 36/67 (53%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI +++ +R + L + FD+ + +G+NG GK++ILEAI + R + + Sbjct: 1 MKINRIHLENYRIHDKLDVEFDSGINLLLGENGKGKSSILEAIGYALFDSELRGGNQREA 60 Query: 65 TRIGSPS 71 + G S Sbjct: 61 IKYGKKS 67 >gi|257876181|ref|ZP_05655834.1| chromosome partition protein SMC [Enterococcus casseliflavus EC20] gi|257810347|gb|EEV39167.1| chromosome partition protein SMC [Enterococcus casseliflavus EC20] Length = 1192 Score = 36.2 bits (82), Expect = 8.6, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 +K + I+ F+++A R V D +H T VG NG GK+NI EAI ++ + R Sbjct: 3 LKRIEIAGFKSFAD-RTVIDFEHRVTAVVGPNGSGKSNITEAIRWVLGEQSAKNLRGGKM 61 Query: 62 ADVTRIGS 69 DV GS Sbjct: 62 PDVIFAGS 69 >gi|254517359|ref|ZP_05129416.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] gi|219674197|gb|EED30566.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] Length = 624 Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAI 47 ++++ ++IS ++N L F+ + IFVG NG GK+N LEA+ Sbjct: 1 MRLRSVSISRYKNLRDFSLDFEGEEFIDIFVGKNGCGKSNFLEAL 45 >gi|156540772|ref|XP_001600265.1| PREDICTED: similar to LP09268p [Nasonia vitripennis] Length = 1307 Score = 36.2 bits (82), Expect = 8.6, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Query: 6 KIKFLNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 +IK L I RN+ R + F T+ +G NG GKT I+EA+ F++ G Sbjct: 3 RIKDLEIRGIRNFGDERAKVLIHFSKPLTLILGPNGTGKTTIIEALKFVTSG 54 >gi|288923593|ref|ZP_06417703.1| chromosome segregation protein SMC [Frankia sp. EUN1f] gi|288345055|gb|EFC79474.1| chromosome segregation protein SMC [Frankia sp. EUN1f] Length = 1256 Score = 36.2 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 28/219 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AI+++ + R + Sbjct: 1 MHLKSLTLRGFKSFASSTTLHLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGT 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCL--------QINDVVI 110 +DV G+P+ R E + + AD ++ +E + R + IN Sbjct: 61 MSDVIFAGTPA-RPALGRAEVLLTIDNADGALPIEYAEVTVGRLMFRSGESEYTINGTAC 119 Query: 111 RVVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 R++D + + L + +D + +RR F++ + +HR+R Sbjct: 120 RLLDIQELMSDSGIGRELHVVVGQGQLDAVLHARPEDRRSFIEEAAGVL--KHRKRK--- 174 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 E+ +R + + + + Q+ LG + IAR Sbjct: 175 EKALRKLEAMAANLTRLTDLSAELRRQLGPLGRQAEIAR 213 >gi|15829155|ref|NP_326515.1| hypothetical protein MYPU_6840 [Mycoplasma pulmonis UAB CTIP] gi|38257744|sp|Q98PN8|RSGA_MYCPU RecName: Full=Putative ribosome biogenesis GTPase RsgA gi|14090099|emb|CAC13857.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 272 Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 11/96 (11%) Query: 18 YASLRLVFDAQHTIFVGDNGVGKTNILEAIS---FLSP------GRGFRRASYADVTRIG 68 Y L +F+ + ++ VG +GVGKT IL +S F + GRG + Sbjct: 135 YKKLNDIFEKKISVLVGQSGVGKTTILNKVSLNNFFTQNISKALGRGKHSTRVVKMIDFN 194 Query: 69 SPSFFST--FARVEGMEGLADISIKLETRDDRSVRC 102 + T F+ +E D+S E+ D S RC Sbjct: 195 NGQIIDTPGFSSIEIQMSQKDLSKSFESFDKYSQRC 230 >gi|225680949|gb|EEH19233.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 1279 Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 M I+++ N ++ + +L L DA T +G NG GK+N ++AISF+ Sbjct: 1 MGKLIRLELFNFKSYKGHHTL-LFGDAYFTSIIGPNGSGKSNSMDAISFV 49 >gi|310778882|ref|YP_003967215.1| chromosome segregation protein SMC [Ilyobacter polytropus DSM 2926] gi|309748205|gb|ADO82867.1| chromosome segregation protein SMC [Ilyobacter polytropus DSM 2926] Length = 1170 Score = 36.2 bits (82), Expect = 8.8, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 10/115 (8%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + +K + I+ F+++A + L F+ T VG NG GK+NIL+AI ++ SY + Sbjct: 1 MHLKAVEINGFKSFAEKINLDFNTGITSIVGPNGSGKSNILDAILWV-----LGEQSYKN 55 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 + S + + + + LA++S+ ++ D V L+I+D I+V L+K Sbjct: 56 IRAKESRDVIFSGGKNKKPKSLAEVSLYIDNSD--RVLPLEIDD--IKVTRRLHK 106 >gi|327292781|ref|XP_003231088.1| SMC protein [Trichophyton rubrum CBS 118892] gi|326466718|gb|EGD92171.1| SMC protein [Trichophyton rubrum CBS 118892] Length = 1309 Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 M I+++ N ++ + +L L DA T +G NG GK+N ++AISF+ Sbjct: 38 MGKLIRLELFNFKSYKGHHTL-LFGDAYFTSIIGPNGSGKSNSMDAISFV 86 >gi|295672530|ref|XP_002796811.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226282183|gb|EEH37749.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 1298 Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 M I+++ N ++ + +L L DA T +G NG GK+N ++AISF+ Sbjct: 1 MGKLIRLELFNFKSYKGHHTL-LFGDAYFTSIIGPNGSGKSNSMDAISFV 49 >gi|123501445|ref|XP_001328078.1| SMC family, C-terminal domain containing protein [Trichomonas vaginalis G3] gi|121911016|gb|EAY15855.1| SMC family, C-terminal domain containing protein [Trichomonas vaginalis G3] Length = 1177 Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 10/87 (11%) Query: 1 MTNRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR- 57 M+ R+ + + + F++Y ++V F+ Q T VG NG GK+N+++A+ F+ GFR Sbjct: 1 MSERLIVTQIVLENFKSYYGRQIVGPFNNQLTCIVGPNGSGKSNLIDALLFVF---GFRA 57 Query: 58 -RASYADVTRI---GSPSFFSTFARVE 80 R ++ +T + G ++ARVE Sbjct: 58 KRMRHSKLTGLIYNGPDHPNISYARVE 84 >gi|187476880|ref|YP_784904.1| hypothetical protein BAV0368 [Bordetella avium 197N] gi|115421466|emb|CAJ47972.1| conserved hypothetical phage protein [Bordetella avium 197N] Length = 522 Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + F+ + +L L FD + I VG N GK+++L+A+ + AS + V Sbjct: 4 IQRLVLKNFKRFKALELEFDPELNILVGGNEAGKSSVLQAMDIV------LSASRSKVEA 57 Query: 67 IGSPSFFSTFARVEGMEG 84 IG + F+ E + G Sbjct: 58 IGLEALFNADCIAEFLAG 75 >gi|50556870|ref|XP_505843.1| YALI0F24783p [Yarrowia lipolytica] gi|49651713|emb|CAG78654.1| YALI0F24783p [Yarrowia lipolytica] Length = 1172 Score = 36.2 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 +K++ L I F++YA+ ++ +D Q G NG GK+NIL+AI F+ Sbjct: 1 MKVEELVIDGFKSYATRTVISGWDPQFNCITGLNGSGKSNILDAICFV 48 >gi|324500675|gb|ADY40310.1| Structural maintenance of chromosomes protein 3 [Ascaris suum] Length = 1202 Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + IS FR+Y + +H +FVG NG GK+N AI F+ Sbjct: 3 IKQVRISGFRSYRDATISDLSPKHNVFVGRNGSGKSNFFFAIEFV 47 >gi|302309923|ref|XP_451012.2| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|199424766|emb|CAH02600.2| KLLA0A00286p [Kluyveromyces lactis] Length = 1224 Score = 36.2 bits (82), Expect = 9.2, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 + IK + IS F+ Y + +V F H + VG NG GK+N AI F+ Sbjct: 2 VHIKTVIISGFKTYKNRTVVENFSPHHNVVVGSNGSGKSNFFAAIRFV 49 >gi|331701504|ref|YP_004398463.1| DNA repair protein RecN [Lactobacillus buchneri NRRL B-30929] gi|329128847|gb|AEB73400.1| DNA repair protein RecN [Lactobacillus buchneri NRRL B-30929] Length = 567 Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L+I++F L + F A T+ G+ G GK+ I++A+ L GRG D+ R G+ Sbjct: 5 LSITDFAIIEHLDIDFQAGMTVLTGETGAGKSIIIDAVGLLVGGRGSH-----DLIRTGA 59 >gi|325567329|ref|ZP_08143996.1| cell division protein Smc [Enterococcus casseliflavus ATCC 12755] gi|325158762|gb|EGC70908.1| cell division protein Smc [Enterococcus casseliflavus ATCC 12755] Length = 1192 Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 +K + I+ F+++A R V D +H T VG NG GK+NI EAI ++ + R Sbjct: 3 LKRIEIAGFKSFAD-RTVIDFEHRVTAVVGPNGSGKSNITEAIRWVLGEQSAKNLRGGKM 61 Query: 62 ADVTRIGS 69 DV GS Sbjct: 62 PDVIFAGS 69 >gi|156094454|ref|XP_001613264.1| chromosome condensation protein [Plasmodium vivax SaI-1] gi|148802138|gb|EDL43537.1| chromosome condensation protein, putative [Plasmodium vivax] Length = 1455 Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 4/81 (4%) Query: 3 NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58 +RI I L + F++Y+ ++++ F + + VG NG GK+NI++A+ F+ R R+ Sbjct: 54 SRIIIDRLVLENFKSYSGVKVIGPFYKKFSCIVGPNGSGKSNIIDAMLFVFGRRAKKIRQ 113 Query: 59 ASYADVTRIGSPSFFSTFARV 79 +D+ S + + +V Sbjct: 114 NKLSDLIHSSKHSMHNEYTKV 134 >gi|284175980|ref|ZP_06389949.1| hypothetical protein Ssol98_15165 [Sulfolobus solfataricus 98/2] Length = 363 Score = 36.2 bits (82), Expect = 9.5, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 IK L I F++Y F+ + +I VG NG GKTN+++A SFL + R SY Sbjct: 2 IKRLKIKNFKSYRDSEFEFE-KVSIVVGPNGSGKTNLVDAFSFLK--QLIRPLSYP 54 >gi|221121736|ref|XP_002162125.1| PREDICTED: similar to structural maintenance of chromosomes 1A, partial [Hydra magnipapillata] Length = 164 Score = 36.2 bits (82), Expect = 9.5, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 27/41 (65%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 L I F++Y L+ ++ + +G NG GK+N+++AISF+ Sbjct: 8 LEIINFKSYKGKHLIGFSKFSAIIGPNGCGKSNMMDAISFV 48 >gi|94496121|ref|ZP_01302699.1| Chromosome segregation protein SMC [Sphingomonas sp. SKA58] gi|94424300|gb|EAT09323.1| Chromosome segregation protein SMC [Sphingomonas sp. SKA58] Length = 1147 Score = 36.2 bits (82), Expect = 9.5, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++IK L +S F+++ L + T VG NG GK+N+LEAI ++ S + R A Sbjct: 1 MQIKRLKLSGFKSFVDPTELRIEPGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGAG 60 Query: 61 YADVTRIGSPS 71 DV G+ S Sbjct: 61 MEDVIFAGTAS 71 >gi|258650434|ref|YP_003199590.1| hypothetical protein Namu_0168 [Nakamurella multipartita DSM 44233] gi|258553659|gb|ACV76601.1| conserved hypothetical protein [Nakamurella multipartita DSM 44233] Length = 1409 Score = 36.2 bits (82), Expect = 9.5, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 12/93 (12%) Query: 264 TLIGPHRSDLIVDYCDKAITIAHGST---GEQKVVL-VGIFLAHARLISNTTGFAPILL- 318 TL+GP D + +T A ST GEQ V L + +F A ++S+ P LL Sbjct: 1251 TLVGP-------DGQEDRLTQARHSTLSGGEQSVSLHLPLFAAAHVMLSSAEPHCPRLLA 1303 Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 LDE A +D+ R+ L + T +FMTG D Sbjct: 1304 LDEAFAGIDDAGRSELLGLTTQFDLDLFMTGYD 1336 >gi|304558200|gb|ADM40864.1| hypothetical protein ETAF_0742 [Edwardsiella tarda FL6-60] Length = 708 Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47 IK L+I FRN+ S +L F + +TI VG+N GKTN+ EA+ Sbjct: 3 IKNLSIRNFRNFQSTKLNFKKECVNTI-VGENSSGKTNVFEAM 44 >gi|258564324|ref|XP_002582907.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237908414|gb|EEP82815.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 1261 Score = 36.2 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 M I+++ N ++ + +L L+ DA T +G NG GK+N ++AISF+ Sbjct: 1 MGKLIRLELFNFKSYKGHHTL-LLGDAYFTSIIGPNGSGKSNSMDAISFV 49 >gi|319941628|ref|ZP_08015952.1| ATP/GTP-binding protein [Sutterella wadsworthensis 3_1_45B] gi|319804858|gb|EFW01712.1| ATP/GTP-binding protein [Sutterella wadsworthensis 3_1_45B] Length = 511 Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63 +KIK + I FR Y V T+ +G N +GK+ ILEA+ F + G G + +D Sbjct: 1 MKIKSVKIKNFRGYRDEICVDFDNLTVLIGKNDIGKSTILEALDIFFNEGNGIVKWDKSD 60 Query: 64 VT 65 + Sbjct: 61 LN 62 >gi|317129741|ref|YP_004096023.1| ATP-dependent endonuclease of the OLD family [Bacillus cellulosilyticus DSM 2522] gi|315474689|gb|ADU31292.1| ATP-dependent endonuclease of the OLD family [Bacillus cellulosilyticus DSM 2522] Length = 669 Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 R+KIK FRNY + +V + I +G+N VGKTN L AI + Sbjct: 11 RVKIK-----NFRNYKDVDVVLSHKQVI-IGENNVGKTNFLRAIQII 51 >gi|222085464|ref|YP_002543994.1| ABC transporter [Agrobacterium radiobacter K84] gi|221722912|gb|ACM26068.1| ABC transporter [Agrobacterium radiobacter K84] Length = 629 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Query: 304 ARLISNTTGF-AP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 ARL+ F AP +L+LDE + HLD D RNAL + + D + + D+ + ++ Sbjct: 436 ARLLMGLAAFDAPNLLILDEPTNHLDIDSRNALIQALNDYSGAVILISHDRHLIEA 491 >gi|307150934|ref|YP_003886318.1| ATP-dependent endonuclease of the OLD family-like protein [Cyanothece sp. PCC 7822] gi|306981162|gb|ADN13043.1| ATP-dependent endonuclease of the OLD family-like protein [Cyanothece sp. PCC 7822] Length = 576 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L I +RN + L+F +G+N +GK+N+L+ ++ L + F+ + + Sbjct: 1 MKIINLKIQNYRNLDGVELIFHPDINFIIGENNLGKSNLLKLLNILFNQQRFKEDDFYNS 60 Query: 65 TR 66 R Sbjct: 61 DR 62 >gi|28958118|gb|AAH47324.1| Structural maintenance of chromosomes 3 [Homo sapiens] Length = 1217 Score = 35.8 bits (81), Expect = 9.9, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Query: 7 IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50 IK + I FR+Y +V F ++H + VG NG GK+N+ AI F+ Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNLFYAIQFV 48 Searching..................................................done Results from round 2 >gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] gi|254040443|gb|ACT57239.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 375/375 (100%), Positives = 375/375 (100%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS Sbjct: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL Sbjct: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS Sbjct: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF Sbjct: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF Sbjct: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE Sbjct: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 Query: 361 TAKFMRISNHQALCI 375 TAKFMRISNHQALCI Sbjct: 361 TAKFMRISNHQALCI 375 >gi|315121983|ref|YP_004062472.1| recombination protein F [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495385|gb|ADR51984.1| recombination protein F [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 375 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 303/373 (81%), Positives = 342/373 (91%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M N+IKIK LN+SEFRNY SLRLVFD+Q TIFVGDNG GKTNILEAIS LSPGRG RRAS Sbjct: 1 MINKIKIKRLNVSEFRNYVSLRLVFDSQQTIFVGDNGAGKTNILEAISLLSPGRGLRRAS 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y+DVTRIGS S FSTFA VEGM+GLA+ISIKLE++DDRS+RCL+INDV IRVVDELN HL Sbjct: 61 YSDVTRIGSLSLFSTFACVEGMDGLAEISIKLESKDDRSIRCLRINDVAIRVVDELNSHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+SWLVPSMDRIFSG S ERRRFLDRMVF+IDPRHRRR+IDFERLMRGRNRLL+EG FD Sbjct: 121 RVSWLVPSMDRIFSGPSTERRRFLDRMVFSIDPRHRRRIIDFERLMRGRNRLLSEGCFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SWCSSIE+QMA LGV+I+IARV+MI+ LSSL+ EY+QKENFPH++L+LTGFLDGK +QSF Sbjct: 181 SWCSSIESQMAGLGVEIDIARVKMIDELSSLMAEYIQKENFPHVELNLTGFLDGKLNQSF 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 LK+EY K LFDGR++DS++RRTLIGPHRSDL+VDYCDK I I HGSTGEQKVVLVGIF Sbjct: 241 LELKQEYVKILFDGRRIDSIARRTLIGPHRSDLVVDYCDKDIKIVHGSTGEQKVVLVGIF 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARLISNTTGFAPILLLDEISAHLDE +RNALFRIV+DIGSQIF+TGTD+S+F SL++ Sbjct: 301 LAHARLISNTTGFAPILLLDEISAHLDEGRRNALFRIVSDIGSQIFITGTDRSMFSSLSD 360 Query: 361 TAKFMRISNHQAL 373 TA FMRI+NHQA Sbjct: 361 TATFMRIANHQAF 373 >gi|222084353|ref|YP_002542882.1| DNA replication and repair protein [Agrobacterium radiobacter K84] gi|254790457|sp|B9JGW1|RECF_AGRRK RecName: Full=DNA replication and repair protein recF gi|221721801|gb|ACM24957.1| DNA replication and repair protein [Agrobacterium radiobacter K84] Length = 375 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 189/372 (50%), Positives = 258/372 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ I L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVFISRLKLTDFRNYAAAALTLDERHVVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+ +P+ FS FA +EGME +I ++T D+ + R L+IN + VDEL HL Sbjct: 61 YADVVRVAAPNGFSIFAELEGMEDTVEIGTGVDTSDETTARKLRINGTPAKTVDELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S ERRRFLDR+V ++DP H RR DFER MR RNRLL+E FD Sbjct: 121 RVLWLTPAMDGLFTGGSSERRRFLDRLVLSLDPAHGRRASDFERAMRSRNRLLSESRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GFLDG+FD+ Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIAETREATPFPSAALELSGFLDGQFDRPA 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++ YA L +GR D+ + RTL GPHR+DL+V + +K + STGEQK +LVG+ Sbjct: 241 LDLEDAYAGMLREGRYRDAAAGRTLDGPHRTDLLVRHREKDMEAERCSTGEQKALLVGLI 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG AP+LLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L E Sbjct: 301 LAHARLVGNLTGHAPVLLLDEIAAHLDEGRRAALFDLIDRLGGQAFMTGTDRAMFSALGE 360 Query: 361 TAKFMRISNHQA 372 A+F +++ Sbjct: 361 RAQFFTVAHGGI 372 >gi|190889810|ref|YP_001976352.1| DNA replication and repair protein [Rhizobium etli CIAT 652] gi|226737822|sp|B3PXG8|RECF_RHIE6 RecName: Full=DNA replication and repair protein recF gi|190695089|gb|ACE89174.1| DNA replication and repair protein [Rhizobium etli CIAT 652] Length = 374 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 183/373 (49%), Positives = 258/373 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA++ L D +H + G+NG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +E ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTTRKLRINGTPAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++EYA L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ Sbjct: 241 VDLEDEYAAMLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALAD 360 Query: 361 TAKFMRISNHQAL 373 A+F +++ + Sbjct: 361 RAQFFTVADGKVF 373 >gi|327192780|gb|EGE59709.1| DNA replication and repair protein [Rhizobium etli CNPAF512] Length = 442 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 182/373 (48%), Positives = 258/373 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA++ L D +H + G+NG GKTN++EA+S LSPGRG RRA+ Sbjct: 69 MPHKVSLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 128 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++G+EG +I +E ++ + R L+IN + DEL HL Sbjct: 129 YGDITRVGAAGGFSIFAALDGIEGEVEIGTGIEAGEETTTRKLRINGTPAKTADELTDHL 188 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD Sbjct: 189 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 248 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + Sbjct: 249 SWLAGIEEQMASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPS 308 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++EYA L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ Sbjct: 309 VDLEDEYAAMLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 368 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + Sbjct: 369 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALAD 428 Query: 361 TAKFMRISNHQAL 373 A+F +++ + Sbjct: 429 RAQFFTVADGKVF 441 >gi|116249915|ref|YP_765753.1| recombination protein F [Rhizobium leguminosarum bv. viciae 3841] gi|123262032|sp|Q1MN15|RECF_RHIL3 RecName: Full=DNA replication and repair protein recF gi|115254563|emb|CAK05637.1| putative DNA replication and repair protein [Rhizobium leguminosarum bv. viciae 3841] Length = 374 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 184/373 (49%), Positives = 258/373 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAAALALDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +ET ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETGEETTARKLRINGTTAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRETSPFPSASLQLSGFMDGQFSRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+++YA L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ Sbjct: 241 VDLEDDYAAMLAESRYRDAGAGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRAMFSALGD 360 Query: 361 TAKFMRISNHQAL 373 A+F +++ + Sbjct: 361 KAQFFTVADGRVF 373 >gi|86355801|ref|YP_467693.1| recombination protein F [Rhizobium etli CFN 42] gi|123738428|sp|Q2KDX0|RECF_RHIEC RecName: Full=DNA replication and repair protein recF gi|86279903|gb|ABC88966.1| DNA replication and repair protein [Rhizobium etli CFN 42] Length = 374 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 181/373 (48%), Positives = 258/373 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAASLSLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +E ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTARRLRINGTPAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL+P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL +G FD Sbjct: 121 RLLWLIPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDDGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ L E ++ FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLTEETLESSPFPSASLQLSGFMDGQFSRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+++Y L + R D+ + RTL GPHR+DL+V + +KA+ A STGEQK +LVG+ Sbjct: 241 VDLEDDYRVMLAESRYRDAGAGRTLEGPHRTDLVVHHREKAMEAARCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE++R ALF I+ +G Q FMTGTD+ +F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDENRRAALFDIIDGLGGQAFMTGTDRGMFTALGD 360 Query: 361 TAKFMRISNHQAL 373 A+F +++ + Sbjct: 361 RAQFFTVADGRVF 373 >gi|209551663|ref|YP_002283580.1| recombination protein F [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226737823|sp|B5ZWP8|RECF_RHILW RecName: Full=DNA replication and repair protein recF gi|209537419|gb|ACI57354.1| DNA replication and repair protein RecF [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 374 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 184/373 (49%), Positives = 257/373 (68%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAAALDLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +ET ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIETGEETTARRLRINGTQAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRETSPFPSASLQLSGFMDGQFTRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++EYA L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ Sbjct: 241 VDLEDEYAAMLSESRYRDAGAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRAMFSALGD 360 Query: 361 TAKFMRISNHQAL 373 A+ +++ + Sbjct: 361 RAQVFTVADGKIF 373 >gi|241207093|ref|YP_002978189.1| recombination protein F [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860983|gb|ACS58650.1| DNA replication and repair protein RecF [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 374 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 185/373 (49%), Positives = 258/373 (69%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAAALTLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +ET ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETSEETTARRLRINGTTAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRESSPFPSAALQLSGFMDGQFSRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+++YA L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ Sbjct: 241 VDLEDDYAAMLAESRYRDAGAGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQSFMTGTDRAMFAALGD 360 Query: 361 TAKFMRISNHQAL 373 A+F +S+ + Sbjct: 361 RAQFFTVSDGRVF 373 >gi|48527207|gb|AAT45744.1| RecF [Rhizobium etli] Length = 374 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 180/373 (48%), Positives = 257/373 (68%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+ L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYAAASLSLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y +TR+G+ FS FA ++GMEG +I +E ++ + R L+IN + DEL HL Sbjct: 61 YGHITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTARRLRINGTPAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL+P+MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL +G FD Sbjct: 121 RLLWLIPAMDGLFTGASSDRRRFLDRLVVSLDPAHGRRASDFERAMRSRNKLLDDGRFDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L+ L E ++ FP L L+GF+DG+F + Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLTEETLESSPFPSASLQLSGFMDGQFSRPS 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+++Y L + R D+ + RTL GPHR+DL+V + +KA+ A STGEQK +LVG+ Sbjct: 241 VDLEDDYRVMLAESRYRDAGAGRTLEGPHRTDLVVHHREKAMEAARCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ N TG APILLLDEI+AHLDE++R ALF I+ +G Q FMTGTD+ +F +L + Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDENRRAALFDIIDGLGGQAFMTGTDRGMFTALGD 360 Query: 361 TAKFMRISNHQAL 373 A+F +++ + Sbjct: 361 RAQFFTVADGRVF 373 >gi|13474646|ref|NP_106215.1| recombination protein F [Mesorhizobium loti MAFF303099] gi|20978640|sp|Q98BH1|RECF_RHILO RecName: Full=DNA replication and repair protein recF gi|14025401|dbj|BAB52001.1| RecF protein [Mesorhizobium loti MAFF303099] Length = 379 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 167/373 (44%), Positives = 233/373 (62%), Gaps = 1/373 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + I L ++ FRNYA+L + +F GDNG GKTN+LEAIS L+PGRG RRA Sbjct: 1 MPAQTHISKLTLTNFRNYAALAIDLAPGAVVFSGDNGAGKTNLLEAISLLTPGRGLRRAP 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R G F+ AR++G +G +I + + R ++IN R +++ + L Sbjct: 61 YADVAREGGDGGFALHARLDGPDGQVEIGTGISVGEGEGGRRVRINGATARSAEDMLEWL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R +D+E+ MRGRNRLLT+G D Sbjct: 121 RVVWLTPAMDALFTGPAADRRRFLDRLVLAIDPGHGQRALDYEKAMRGRNRLLTDGSRDD 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 W +IE QMAE GV I AR E++ L+++I FP +SL+G L+ + + Sbjct: 181 RWFEAIETQMAETGVAIAAARAELVRLLAAMIDRLPDTGPFPQADISLSGDLEAEVSSAP 240 Query: 241 C-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E + + L GR D + RTL GPHRSDL+V + KA+ STGEQK +LVGI Sbjct: 241 AVDVEERFRRALAGGRDRDRAAGRTLEGPHRSDLLVRHRPKAMPAELCSTGEQKALLVGI 300 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L+HARL +G PILLLDEI+AHLD +R ALF I+ ++ Q FMTGTD ++F SL Sbjct: 301 VLSHARLTGEMSGMTPILLLDEIAAHLDGGRRAALFSILEELNCQAFMTGTDAALFSSLM 360 Query: 360 ETAKFMRISNHQA 372 A+F+ + + Sbjct: 361 GRAQFLTVDHGTV 373 >gi|218515494|ref|ZP_03512334.1| recombination protein F [Rhizobium etli 8C-3] Length = 367 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 182/366 (49%), Positives = 253/366 (69%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L +++FRNYA++ L D +H + G+NG GKTN++EA+S LSPGRG RRA+Y D+TR+ Sbjct: 1 SRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAAYGDITRV 60 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 G+ FS FA ++GMEG +I +E ++ + R L+IN + DEL HLR+ WL P Sbjct: 61 GAAGGFSIFAALDGMEGEVEIGTGIEAGEETTTRKLRINGKPAKTADELTDHLRLLWLTP 120 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 +MD +F+G S +RRRFLDR+V ++DP H RR DFER MR RN+LL EG FD SW + IE Sbjct: 121 AMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDPSWLAGIE 180 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 QMA LG+ + +AR EM+ L+ LI E + FP L L+GF+DG+F + L++EY Sbjct: 181 EQMASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPSVDLEDEY 240 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 A L + R D+ + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ LAHARL+ Sbjct: 241 AAMLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLV 300 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 N TG APILLLDEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + A+F + Sbjct: 301 GNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALADRAQFFTV 360 Query: 368 SNHQAL 373 ++ + Sbjct: 361 ADGKVF 366 >gi|25453250|sp|Q8UJ65|RECF_AGRT5 RecName: Full=DNA replication and repair protein recF Length = 376 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 187/373 (50%), Positives = 253/373 (67%), Gaps = 1/373 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 MTN++ + L +++FRNYA+ LV D +H + GDNG GKTN+LEA+SFLSPGRG RRA Sbjct: 2 MTNKVSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAV 61 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +DVTR+G+ + FS FA V+GM+G I +E + R L++N ++ VDEL H Sbjct: 62 LSDVTRVGAEATGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTPVKSVDELTDH 121 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFE+ MRGRNRLL+EG FD Sbjct: 122 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLLSEGRFD 181 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 W IE QMAELG+ + +AR EM+ L +LI FP LSL GF+D + ++ Sbjct: 182 PVWLDGIEKQMAELGISMAVARYEMLGLLKTLIEGRAGNAAFPSATLSLAGFMDDRLNRP 241 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L++EY L DGR D+ + RTL GPHR DL V + +K + STGEQK +LVG+ Sbjct: 242 AVDLEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 301 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHA+L +N TG+AP+LLLDEI+AHLDE +R ALF ++ +G Q FMTGTD ++F +L Sbjct: 302 VLAHAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 361 Query: 360 ETAKFMRISNHQA 372 E A+F +S+ Sbjct: 362 ERAQFFNVSHGGI 374 >gi|159184149|ref|NP_353107.2| recombination protein F [Agrobacterium tumefaciens str. C58] gi|159139484|gb|AAK85892.2| recF-like protein [Agrobacterium tumefaciens str. C58] Length = 375 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 187/373 (50%), Positives = 253/373 (67%), Gaps = 1/373 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 MTN++ + L +++FRNYA+ LV D +H + GDNG GKTN+LEA+SFLSPGRG RRA Sbjct: 1 MTNKVSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAV 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +DVTR+G+ + FS FA V+GM+G I +E + R L++N ++ VDEL H Sbjct: 61 LSDVTRVGAEATGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTPVKSVDELTDH 120 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFE+ MRGRNRLL+EG FD Sbjct: 121 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLLSEGRFD 180 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 W IE QMAELG+ + +AR EM+ L +LI FP LSL GF+D + ++ Sbjct: 181 PVWLDGIEKQMAELGISMAVARYEMLGLLKTLIEGRAGNAAFPSATLSLAGFMDDRLNRP 240 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L++EY L DGR D+ + RTL GPHR DL V + +K + STGEQK +LVG+ Sbjct: 241 AVDLEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 300 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHA+L +N TG+AP+LLLDEI+AHLDE +R ALF ++ +G Q FMTGTD ++F +L Sbjct: 301 VLAHAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 360 Query: 360 ETAKFMRISNHQA 372 E A+F +S+ Sbjct: 361 ERAQFFNVSHGGI 373 >gi|319779752|ref|YP_004139228.1| DNA replication and repair protein RecF [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165640|gb|ADV09178.1| DNA replication and repair protein RecF [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 381 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 170/375 (45%), Positives = 234/375 (62%), Gaps = 3/375 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + I L ++ FRNYA+L + +F GDNG GKTN+LEAISFL+PGRG RRA Sbjct: 1 MPAQNHISKLTLTNFRNYAALTIDLAPGAVVFSGDNGAGKTNLLEAISFLTPGRGLRRAP 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD--DRSVRCLQINDVVIRVVDELNK 118 YADV R G F+ AR++G +G +I + D R ++IN R +++ + Sbjct: 61 YADVAREGGDGGFALHARLDGPDGQVEIGTGISGGDTAGEGGRRVRINGASARSAEDMLE 120 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 LR+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R ID+E+ MRGRNRLLTE Sbjct: 121 WLRVVWLTPAMDALFTGPAADRRRFLDRLVLAIDPGHGQRAIDYEKAMRGRNRLLTESSR 180 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D W +IE QMAE GV I AR EM+ L+++I FP + L+G L+ + Sbjct: 181 DDRWFDAIETQMAETGVAIAAARAEMVRLLAAMIDRLPDTGPFPQADIGLSGELEAEIAV 240 Query: 239 SFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + ++E + + L +GR+ D + RTL GPHRSDL+V + KA+ STGEQK +LV Sbjct: 241 APAVDVEERFRRTLAEGRERDRAAGRTLDGPHRSDLVVRHRPKAMPAELCSTGEQKALLV 300 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 GI L+HARL +G PILLLDEI+AHLD +R ALF I+ ++ Q FMTGTD ++F S Sbjct: 301 GIVLSHARLTGEMSGMTPILLLDEIAAHLDSGRRAALFSILEELNCQAFMTGTDAALFSS 360 Query: 358 LNETAKFMRISNHQA 372 L A+F+ + + Sbjct: 361 LQGRAQFLTVDHGTV 375 >gi|260461963|ref|ZP_05810208.1| DNA replication and repair protein RecF [Mesorhizobium opportunistum WSM2075] gi|259032210|gb|EEW33476.1| DNA replication and repair protein RecF [Mesorhizobium opportunistum WSM2075] Length = 377 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 170/371 (45%), Positives = 231/371 (62%), Gaps = 1/371 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + I L ++ FRNYA+L + +F GDNG GKTN+LEAISFL+PGRG RRA Sbjct: 1 MPGQTHISKLTLTNFRNYAALAIDLAPGAVVFSGDNGAGKTNLLEAISFLTPGRGLRRAP 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R G F+ AR++G +G +I + D R ++IN R +++ + L Sbjct: 61 YADVARAGGDGGFALHARLDGPDGQVEIGTGISGGDSEGGRRVRINGATARSAEDMLEWL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R +D+E+ MRGRNRLLTE D Sbjct: 121 RVVWLTPAMDTLFTGPAADRRRFLDRLVLAIDPGHGQRALDYEKAMRGRNRLLTENSRDD 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 W +IE QMAE GV I AR EM+ L+++I FP + L G L+ + Sbjct: 181 RWFEAIEIQMAETGVAIAAARAEMVRLLAAMIDRLPDSGPFPQADIGLAGDLEAEIAGTP 240 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E + + L DGR D + RTL GPHRSDL+V + KA+ STGEQK +LVGI Sbjct: 241 AVDVEERFRRALADGRDRDRAAGRTLEGPHRSDLLVRHRPKAMPAELCSTGEQKALLVGI 300 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L+HARL +G PILLLDEI+AHLD +R ALF I+ ++ Q FMTGTD ++F SL Sbjct: 301 VLSHARLTGEVSGMTPILLLDEIAAHLDGGRRAALFSILEELNCQAFMTGTDAALFSSLQ 360 Query: 360 ETAKFMRISNH 370 A+F+ + + Sbjct: 361 GRAQFLTVDHG 371 >gi|227824004|ref|YP_002827977.1| recombination protein F [Sinorhizobium fredii NGR234] gi|227343006|gb|ACP27224.1| DNA replication and repair protein, RecF [Sinorhizobium fredii NGR234] Length = 470 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 181/372 (48%), Positives = 254/372 (68%), Gaps = 1/372 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA+L L D +H + G+NG GKTN++EAISFLSPGRG RRA+ Sbjct: 98 MPHKVSLTRLKLTDFRNYAALSLELDQRHVVLTGENGAGKTNLMEAISFLSPGRGLRRAA 157 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+G+ FS FA VEGM+G +I ++ R L++N R VDEL HL Sbjct: 158 YADVARVGATDGFSVFAAVEGMDGPVEIGTGTAGAEEGQSRRLRLNGTPARTVDELTDHL 217 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR +F+R MR RNRLL+E D Sbjct: 218 RVLWLTPAMDGLFTGPSSDRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 277 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W ++IE +MA LGV + +AR+EM+ L++ ++E Q +FP LSL GFLD Sbjct: 278 AWLTAIEREMAGLGVSMALARLEMLGLLTA-LVERSQGGSFPSAGLSLAGFLDDCHGLPA 336 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E Y L DGR D+ + RTL GPHRSDL++ + +K + STGEQK +LVG+ Sbjct: 337 YDLEERYLAMLSDGRGRDAAAGRTLDGPHRSDLLIRHREKDMEAERCSTGEQKALLVGLV 396 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF V ++G Q FMTGTD+++F +L E Sbjct: 397 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDRVDELGGQAFMTGTDRAMFTALGE 456 Query: 361 TAKFMRISNHQA 372 A ++ ++N + Sbjct: 457 RACYLTVANGRV 468 >gi|325291519|ref|YP_004277383.1| recombination protein F [Agrobacterium sp. H13-3] gi|325059372|gb|ADY63063.1| recombination protein F [Agrobacterium sp. H13-3] Length = 375 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 184/373 (49%), Positives = 252/373 (67%), Gaps = 1/373 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 MTN++ + L +++FRNYA+ L D +H + GDNG GKTN+LEA+SFLSPGRG RRA+ Sbjct: 1 MTNKVSLLRLKLTDFRNYAAASLALDDRHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAT 60 Query: 61 YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +DVTR+G+ + FS FA V+GM+G I +E + R L++N ++ VDEL H Sbjct: 61 LSDVTRVGAEAAGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTSVKSVDELTDH 120 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR DFE+ MRGRNRLL+EG FD Sbjct: 121 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPAHGRRASDFEKAMRGRNRLLSEGRFD 180 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 W IE QMAELG+ + +AR EM+ L SLI FP L+L+GF+D ++ Sbjct: 181 PVWLDGIEKQMAELGISMALARYEMLGLLKSLIEGRSGNAAFPSAALALSGFMDDTLNRP 240 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L++EY L +GR D+ + RTL GPHR DL V + +K + STGEQK +LVG+ Sbjct: 241 AVDLEDEYRLTLREGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 300 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHA+L +N TG AP+LLLDEI+AHLDE +R ALF ++ +G Q FMTGTD ++F +L Sbjct: 301 VLAHAQLTANMTGHAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 360 Query: 360 ETAKFMRISNHQA 372 + A+F +S+ Sbjct: 361 DRAQFFNVSHGGI 373 >gi|15963941|ref|NP_384294.1| recombination protein F [Sinorhizobium meliloti 1021] gi|307306353|ref|ZP_07586097.1| DNA replication and repair protein RecF [Sinorhizobium meliloti BL225C] gi|8475781|sp|P56903|RECF_RHIME RecName: Full=DNA replication and repair protein recF gi|15073116|emb|CAC41575.1| DNA repair protein [Sinorhizobium meliloti 1021] gi|306902195|gb|EFN32792.1| DNA replication and repair protein RecF [Sinorhizobium meliloti BL225C] Length = 374 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 183/372 (49%), Positives = 253/372 (68%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +S+FRNYA+L L D +H + G+NG GKTN++E +SFLSPGRG RRA+ Sbjct: 1 MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+G+P FS FA V+GMEG +I + ++ R L+IN R VDEL HL Sbjct: 61 YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR +F+R MR RNRLL+E D Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W S+IE +MA LG+ + +AR EM+ LS+L+ FP LSL GFLD Sbjct: 181 AWLSAIEREMAGLGISMALARQEMLGLLSALVERSRSDGTFPSASLSLAGFLDDCAGIPA 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E Y L +GR D+ + RTL GPHRSDL++ + +K I STGEQK +LVG+ Sbjct: 241 FELEERYLAMLAEGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V +G Q FMTGTD+++FD+L E Sbjct: 301 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQSFMTGTDRAMFDALGE 360 Query: 361 TAKFMRISNHQA 372 A+++ ++N + Sbjct: 361 RAQYLAVANGRV 372 >gi|307319240|ref|ZP_07598669.1| DNA replication and repair protein RecF [Sinorhizobium meliloti AK83] gi|306895076|gb|EFN25833.1| DNA replication and repair protein RecF [Sinorhizobium meliloti AK83] Length = 374 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 183/372 (49%), Positives = 253/372 (68%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +S+FRNYA+L L D +H + G+NG GKTN++E +SFLSPGRG RRA+ Sbjct: 1 MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+G+P FS FA V+GMEG +I + ++ R L+IN R VDEL HL Sbjct: 61 YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR +F+R MR RNRLL+E D Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W S+IE +MA LG+ + +AR EM+ LS+L+ FP LSL GFLD Sbjct: 181 AWLSAIEREMAGLGISMALARQEMLGLLSALVERSRSDGTFPSASLSLAGFLDDGAGIPA 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E Y L +GR D+ + RTL GPHRSDL++ + +K I STGEQK +LVG+ Sbjct: 241 FELEERYLAMLAEGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V +G Q FMTGTD+++FD+L E Sbjct: 301 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQSFMTGTDRAMFDALGE 360 Query: 361 TAKFMRISNHQA 372 A+++ ++N + Sbjct: 361 RAQYLAVANGRV 372 >gi|163757765|ref|ZP_02164854.1| putative DNA replication and repair protein [Hoeflea phototrophica DFL-43] gi|162285267|gb|EDQ35549.1| putative DNA replication and repair protein [Hoeflea phototrophica DFL-43] Length = 382 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 172/374 (45%), Positives = 245/374 (65%), Gaps = 2/374 (0%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M ++ I+ L ++ FRNYAS L DA+H + VGDNG GKTN++EA+S LSPGRG RRA Sbjct: 1 MAQKVHIERLKLTGFRNYASQSLELDARHVVLVGDNGAGKTNLMEAVSLLSPGRGMRRAP 60 Query: 61 YADVTRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 Y+DV + GS S FS FA +EGM G DI ++ ++ R ++IN R D++ + Sbjct: 61 YSDVIKAGSEPASGFSIFASLEGMAGPVDIGTGVDGLEESGARKVRINGSPARSADDMLE 120 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 HLR+ WL PSMD +F+G + +RRRFLDR+V ++DP H R + +ER MR RNRLL+EG Sbjct: 121 HLRLLWLTPSMDGLFTGSAGDRRRFLDRLVLSVDPAHGSRALSYERAMRSRNRLLSEGRA 180 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D +W +EAQM+ELGV + +AR E++ LS+LI + + FP + L GFL+ + + Sbjct: 181 DPTWLDGLEAQMSELGVAMAMARSEVVRLLSALIDDSQAESPFPAASVRLEGFLEDEGLE 240 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++ + + GR D+ + RTL GPHR DL+V + KA+ A STGEQK +L+G Sbjct: 241 TASDMEVAFIDLMKHGRGRDAAAGRTLSGPHRMDLVVHHRAKAMPAALSSTGEQKALLIG 300 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 I L HA+L+ + TG APILLLDE++AHLDE +R ALF ++ + Q FMTGTD ++F SL Sbjct: 301 IILGHAQLVRSLTGHAPILLLDEVAAHLDEGRRAALFDLIETLDCQAFMTGTDAAMFGSL 360 Query: 359 NETAKFMRISNHQA 372 + +S +A Sbjct: 361 GPRGQMFEVSEGRA 374 >gi|288906437|ref|YP_003431659.1| recombination protein RecF [Streptococcus gallolyticus UCN34] gi|306832474|ref|ZP_07465626.1| recombination protein F [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979499|ref|YP_004289215.1| DNA replication and repair protein recF [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733163|emb|CBI14744.1| recombination protein RecF [Streptococcus gallolyticus UCN34] gi|304425374|gb|EFM28494.1| recombination protein F [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179427|emb|CBZ49471.1| DNA replication and repair protein recF [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 364 Score = 364 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY + L F +F+G N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + V G+ + ++ L+ R ++N + + + + + Sbjct: 61 IHFDAKELL-----VSGILQRSSGTVPLDISLSSKGRVTKVNHLKQAKLSDYIGVMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D+ + Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQRNTYLKTAEKVDTDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A+ G ++ R++ I+ L Y + LS+ F Q + Sbjct: 176 AVLDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGVEHLSIHYLSSVSF-QEKDDI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K + K L + D + T +GPHR DL D + GS G+ + +++ + +A Sbjct: 235 KPNFLKALQKNHQRDIFKKNTSVGPHRDDLEFFIND--MPANFGSQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI TG PILLLD++ + LD ++ L +++ D Q F+T T L + K Sbjct: 293 IELIKTVTGDYPILLLDDVMSELDNYRQTELLKMIIDKNVQTFITTTSLDHLSQLPDELK 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFTVNQGNI 361 >gi|306834588|ref|ZP_07467701.1| recombination protein F [Streptococcus bovis ATCC 700338] gi|304423390|gb|EFM26543.1| recombination protein F [Streptococcus bovis ATCC 700338] Length = 364 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 162/369 (43%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY + L F +F+G N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + V G+ + ++ L+ R ++N + + + + + Sbjct: 61 IHFDAKELL-----VSGILQRSSGTVPLDISLSSKGRVTKVNHLKQAKLSDYIGVMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D+ + Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQRNTYLKTAEKVDTDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A+ G ++ R++ I+ L Y + LS+ F Q + Sbjct: 176 AVLDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGIEHLSIHYLSSVSF-QEKDDI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K + K L ++ D + T +GPHR DL D + GS G+ + +++ + +A Sbjct: 235 KPNFLKALQKNQQRDIFKKNTSVGPHRDDLEFFIND--MPANFGSQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI TG PILLLD++ + LD ++ L +++ D Q F+T T L + K Sbjct: 293 IELIRTVTGDYPILLLDDVMSELDNYRQTELLKMIIDKNVQTFITTTSLDHLSQLPDDLK 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFTVNQGNI 361 >gi|228994211|ref|ZP_04154111.1| DNA replication and repair protein recF [Bacillus pseudomycoides DSM 12442] gi|228765663|gb|EEM14317.1| DNA replication and repair protein recF [Bacillus pseudomycoides DSM 12442] Length = 375 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 167/377 (44%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MYIKELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----YGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQRLSQYIGEMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL DK + + GS G+Q+ + Sbjct: 236 GLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNDKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKQAKTIHVTNGTVDC 370 >gi|228995400|ref|ZP_04155072.1| DNA replication and repair protein recF [Bacillus mycoides Rock3-17] gi|229003014|ref|ZP_04160873.1| DNA replication and repair protein recF [Bacillus mycoides Rock1-4] gi|228758242|gb|EEM07428.1| DNA replication and repair protein recF [Bacillus mycoides Rock1-4] gi|228764353|gb|EEM13228.1| DNA replication and repair protein recF [Bacillus mycoides Rock3-17] Length = 375 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 167/377 (44%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MYIKELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----YGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQRLSQYIGEMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL DK + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNDKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKQAKTIHVTNGTVDC 370 >gi|312866766|ref|ZP_07726979.1| DNA replication and repair protein RecF [Streptococcus parasanguinis F0405] gi|311097549|gb|EFQ55780.1| DNA replication and repair protein RecF [Streptococcus parasanguinis F0405] Length = 364 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L+I FRNY L + F IF+G N GKTNILE+I FL+ R R + D+ Sbjct: 1 MWLKQLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F +V G + LE R ++N + + H+ + Sbjct: 61 IYFESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 P ++ G RR+F+D + + P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +++Q+A G ++ R+E I L + E + + LS+ F + + Sbjct: 176 EVLDSQLASFGSRVIHHRLEFIKKLEAKAEEKHTRLSDNKEDLSIQYQ-STVFSEEGNDI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E++ L R+ D + T IGPHR DL + GS G+ + V++ + LA Sbjct: 235 EEQFLSMLEKNRQKDIFRKTTSIGPHRDDLAFFINNMN--ATFGSQGQHRSVVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ T PILLLD++ + LD ++ L +++ Q F+T T L E K Sbjct: 293 IELMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTTTLDHLKDLPEELK 351 Query: 364 FMRISNHQA 372 + Sbjct: 352 IFTVQAGHI 360 >gi|15612567|ref|NP_240870.1| recombination protein F [Bacillus halodurans C-125] gi|13959499|sp|Q9RC99|RECF_BACHD RecName: Full=DNA replication and repair protein recF gi|5672650|dbj|BAA82688.1| 63%-identity [Bacillus halodurans] gi|10172616|dbj|BAB03723.1| DNA repair and genetic recombination [Bacillus halodurans C-125] Length = 371 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 167/372 (44%), Gaps = 13/372 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + +FRNY L + F+ + +G+N GKTN++EAI FL+ + R A ++ Sbjct: 1 MHIERLTLKQFRNYDELDVSFEPNVNVIIGENAQGKTNVIEAIYFLALAKSHRTARDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +P FAR+EG + + L + +++N + R + + + + Sbjct: 61 IQWEAP-----FARIEGAFQKQNGPLSLHVVLSGKGKKVKVNGLEQRRLSDYIGAVNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P + G RRRFLD + + P + ++ +++++ RN LL + Sbjct: 116 FGPEDLNLVKGSPQIRRRFLDMELGQMSPVYLHQLAMYQKILLQRNHLLKQLFGKANSDP 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--S 239 + Q+ E+ V++ R E I L E Q + KL +T + + Sbjct: 176 MLDVLTDQLIEVAVEVTKKRFEFIQLLQRWAEEIHQAISRGKEKLVITYEPSVHVSEQLN 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L+E + + ++ + TL GPHR DL+ DK + +GS G+Q+ + + Sbjct: 236 LSKLREGFYQAYEQKKERERQRGTTLFGPHRDDLVFFVNDKDV-QTYGSQGQQRTTALSL 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358 LA L+ T G PILLLD++ + LD+ +++ L + Q F+T T+ D Sbjct: 295 KLAEIELMKETVGDYPILLLDDVLSELDDYRQSHLLHAIQH-RVQTFVTTTNVDGIDHQT 353 Query: 359 NETAKFMRISNH 370 + A + Sbjct: 354 LQEATIYEVEQG 365 >gi|228942641|ref|ZP_04105173.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975571|ref|ZP_04136123.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982207|ref|ZP_04142496.1| DNA replication and repair protein recF [Bacillus thuringiensis Bt407] gi|228777559|gb|EEM25837.1| DNA replication and repair protein recF [Bacillus thuringiensis Bt407] gi|228784181|gb|EEM32208.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817067|gb|EEM63160.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937801|gb|AEA13697.1| recombination protein F [Bacillus thuringiensis serovar chinensis CT-43] Length = 375 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDEE-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKDAKTIHVTNGTVDC 370 >gi|196036149|ref|ZP_03103549.1| DNA replication and repair protein RecF [Bacillus cereus W] gi|195991316|gb|EDX55284.1| DNA replication and repair protein RecF [Bacillus cereus W] Length = 375 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G D S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRDSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|222147250|ref|YP_002548207.1| recombination protein F [Agrobacterium vitis S4] gi|259563353|sp|B9JZ91|RECF_AGRVS RecName: Full=DNA replication and repair protein recF gi|221734240|gb|ACM35203.1| DNA replication and repair protein [Agrobacterium vitis S4] Length = 374 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 184/370 (49%), Positives = 248/370 (67%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + I L +++FRNY S L D +H + G+NG GKTN++EA+SFLSPGRG RRA Sbjct: 1 MAEKTFINRLQLTDFRNYGSASLRLDGRHVVLTGNNGSGKTNLMEAVSFLSPGRGLRRAV 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 +DV R G+ S FS FA +EGM G ++ E D+ +VR L+IN +R VDEL HL Sbjct: 61 LSDVARAGAASGFSIFASLEGMAGDVELGTGSEVLDETAVRRLRINGASVRSVDELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S ERRRFLDR+V +IDP+H RR DFER MR RN+LL+EG FD+ Sbjct: 121 RVLWLTPAMDGLFTGSSSERRRFLDRLVLSIDPQHGRRASDFERAMRSRNKLLSEGRFDA 180 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW + IE QMA LG+ + +AR EM+ L++LI + + E FP L L+GF+D + Sbjct: 181 SWLAGIEQQMAALGIAMALARQEMMRLLAALIEQRREPETFPGADLMLSGFMDEHAGTAA 240 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++ Y L R D+ + RTL GPHRSDL+V + +K + STGEQK +L+G+ Sbjct: 241 IDLEDTYRDSLAGSRGRDAAAGRTLEGPHRSDLLVRHREKDMEAERCSTGEQKALLIGLI 300 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHA L++ TGFAPILLLDEI+AHLDE +R ALF + +G Q FMTGTD +F SL + Sbjct: 301 LAHAELVATMTGFAPILLLDEIAAHLDEGRRAALFDRIDVLGGQAFMTGTDAQMFASLGD 360 Query: 361 TAKFMRISNH 370 A+F+ + + Sbjct: 361 RAQFVTVDDG 370 >gi|75761790|ref|ZP_00741725.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895145|ref|YP_002443556.1| DNA replication and repair protein RecF [Bacillus cereus G9842] gi|228905436|ref|ZP_04069391.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL 4222] gi|228968645|ref|ZP_04129628.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar sotto str. T04001] gi|226737769|sp|B7IS23|RECF_BACC2 RecName: Full=DNA replication and repair protein recF gi|74490723|gb|EAO54004.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218546019|gb|ACK98413.1| DNA replication and repair protein RecF [Bacillus cereus G9842] gi|228791074|gb|EEM38692.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar sotto str. T04001] gi|228854256|gb|EEM98959.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL 4222] Length = 375 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDEE-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKDAKTIHVTNGTVDC 370 >gi|163938017|ref|YP_001642901.1| recombination protein F [Bacillus weihenstephanensis KBAB4] gi|229136318|ref|ZP_04265065.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST196] gi|226737772|sp|A9VM93|RECF_BACWK RecName: Full=DNA replication and repair protein recF gi|163860214|gb|ABY41273.1| DNA replication and repair protein RecF [Bacillus weihenstephanensis KBAB4] gi|228647190|gb|EEL03278.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST196] Length = 375 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 164/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + ++G + SI LE + + ++N + + + + + + Sbjct: 61 IRWDED-----YGNIKGRLQRRNSSISLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TL+GPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVEGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|30018282|ref|NP_829913.1| recombination protein F [Bacillus cereus ATCC 14579] gi|218232841|ref|YP_002364859.1| recombination protein F [Bacillus cereus B4264] gi|228955742|ref|ZP_04117737.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229051161|ref|ZP_04194705.1| DNA replication and repair protein recF [Bacillus cereus AH676] gi|229072957|ref|ZP_04206153.1| DNA replication and repair protein recF [Bacillus cereus F65185] gi|229112905|ref|ZP_04242436.1| DNA replication and repair protein recF [Bacillus cereus Rock1-15] gi|229130738|ref|ZP_04259691.1| DNA replication and repair protein recF [Bacillus cereus BDRD-Cer4] gi|229148042|ref|ZP_04276381.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST24] gi|229153651|ref|ZP_04281827.1| DNA replication and repair protein recF [Bacillus cereus m1550] gi|229181738|ref|ZP_04309061.1| DNA replication and repair protein recF [Bacillus cereus 172560W] gi|229193743|ref|ZP_04320684.1| DNA replication and repair protein recF [Bacillus cereus ATCC 10876] gi|51316395|sp|Q81JD2|RECF_BACCR RecName: Full=DNA replication and repair protein recF gi|226737770|sp|B7HIH7|RECF_BACC4 RecName: Full=DNA replication and repair protein recF gi|29893822|gb|AAP07114.1| DNA replication and repair protein recF [Bacillus cereus ATCC 14579] gi|218160798|gb|ACK60790.1| DNA replication and repair protein RecF [Bacillus cereus B4264] gi|228589768|gb|EEK47646.1| DNA replication and repair protein recF [Bacillus cereus ATCC 10876] gi|228601771|gb|EEK59269.1| DNA replication and repair protein recF [Bacillus cereus 172560W] gi|228629837|gb|EEK86490.1| DNA replication and repair protein recF [Bacillus cereus m1550] gi|228635467|gb|EEK91958.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST24] gi|228652755|gb|EEL08640.1| DNA replication and repair protein recF [Bacillus cereus BDRD-Cer4] gi|228670584|gb|EEL25897.1| DNA replication and repair protein recF [Bacillus cereus Rock1-15] gi|228710203|gb|EEL62181.1| DNA replication and repair protein recF [Bacillus cereus F65185] gi|228722224|gb|EEL73625.1| DNA replication and repair protein recF [Bacillus cereus AH676] gi|228803970|gb|EEM50594.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 375 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|42779085|ref|NP_976332.1| recombination protein F [Bacillus cereus ATCC 10987] gi|49477032|ref|YP_034364.1| recombination protein F [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118475782|ref|YP_892933.1| recombination protein F [Bacillus thuringiensis str. Al Hakam] gi|196041944|ref|ZP_03109231.1| DNA replication and repair protein RecF [Bacillus cereus NVH0597-99] gi|196045554|ref|ZP_03112785.1| DNA replication and repair protein RecF [Bacillus cereus 03BB108] gi|206975840|ref|ZP_03236751.1| DNA replication and repair protein RecF [Bacillus cereus H3081.97] gi|217957585|ref|YP_002336127.1| recombination protein F [Bacillus cereus AH187] gi|222093778|ref|YP_002527825.1| recombination protein f [Bacillus cereus Q1] gi|225862061|ref|YP_002747439.1| DNA replication and repair protein RecF [Bacillus cereus 03BB102] gi|228918104|ref|ZP_04081632.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930498|ref|ZP_04093498.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931510|ref|ZP_04094420.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228988721|ref|ZP_04148806.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229124995|ref|ZP_04254169.1| DNA replication and repair protein recF [Bacillus cereus 95/8201] gi|229142241|ref|ZP_04270765.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST26] gi|229187721|ref|ZP_04314857.1| DNA replication and repair protein recF [Bacillus cereus BGSC 6E1] gi|229199684|ref|ZP_04326327.1| DNA replication and repair protein recF [Bacillus cereus m1293] gi|301051745|ref|YP_003789956.1| recombination protein F [Bacillus anthracis CI] gi|51316288|sp|Q73FK2|RECF_BACC1 RecName: Full=DNA replication and repair protein recF gi|81697025|sp|Q6HQ00|RECF_BACHK RecName: Full=DNA replication and repair protein recF gi|166220700|sp|A0R883|RECF_BACAH RecName: Full=DNA replication and repair protein recF gi|226737771|sp|B7HPS0|RECF_BACC7 RecName: Full=DNA replication and repair protein recF gi|254790462|sp|C1ES11|RECF_BACC3 RecName: Full=DNA replication and repair protein recF gi|254790463|sp|B9IYH1|RECF_BACCQ RecName: Full=DNA replication and repair protein recF gi|42735000|gb|AAS38940.1| DNA replication and repair protein RecF [Bacillus cereus ATCC 10987] gi|49328588|gb|AAT59234.1| DNA replication and repair protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415007|gb|ABK83426.1| DNA replication and repair protein RecF [Bacillus thuringiensis str. Al Hakam] gi|196023761|gb|EDX62437.1| DNA replication and repair protein RecF [Bacillus cereus 03BB108] gi|196027199|gb|EDX65819.1| DNA replication and repair protein RecF [Bacillus cereus NVH0597-99] gi|206745934|gb|EDZ57330.1| DNA replication and repair protein RecF [Bacillus cereus H3081.97] gi|217067704|gb|ACJ81954.1| DNA replication and repair protein RecF [Bacillus cereus AH187] gi|221237823|gb|ACM10533.1| DNA replication and repair protein [Bacillus cereus Q1] gi|225790870|gb|ACO31087.1| DNA replication and repair protein RecF [Bacillus cereus 03BB102] gi|228583779|gb|EEK41954.1| DNA replication and repair protein recF [Bacillus cereus m1293] gi|228595789|gb|EEK53473.1| DNA replication and repair protein recF [Bacillus cereus BGSC 6E1] gi|228641259|gb|EEK97566.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST26] gi|228658496|gb|EEL14162.1| DNA replication and repair protein recF [Bacillus cereus 95/8201] gi|228771033|gb|EEM19514.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228828153|gb|EEM73877.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829217|gb|EEM74854.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841584|gb|EEM86700.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300373914|gb|ADK02818.1| recombination protein F [Bacillus cereus biovar anthracis str. CI] gi|324323998|gb|ADY19258.1| recombination protein F [Bacillus thuringiensis serovar finitimus YBT-020] Length = 375 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|296500842|ref|YP_003662542.1| recombination protein F [Bacillus thuringiensis BMB171] gi|296321894|gb|ADH04822.1| recombination protein F [Bacillus thuringiensis BMB171] Length = 375 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQQWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|171778593|ref|ZP_02919720.1| hypothetical protein STRINF_00572 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282816|gb|EDT48240.1| hypothetical protein STRINF_00572 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 364 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 160/369 (43%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY + L F + +F+G N GKTN LEAI FLS R R S ++ Sbjct: 1 MWIQKIALKNYRNYLTNELEFSPRLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 RV G+ + ++ LE R ++N + + + + + Sbjct: 61 IHFQEKEL-----RVSGILQRSSGTVPLEINLSSKGRVTKVNHLKQAKLSDYIGVMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D + Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNTYLKTAEKVDIDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A+ G ++ R++ ++ L Y + + F Q + Sbjct: 176 AVLDEQLADFGSRVMEHRLDFVSNLEKAADRYHYAISNGLEHFKIRYLSSVPF-QEKSEI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + K L RK D + T GPHR DL D + GS G+ + +++ + +A Sbjct: 235 KEYFLKTLEKNRKRDIFKKNTGAGPHRDDLEFFIND--MPANFGSQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI N TG PILLLD++ + LD ++ L +++ Q F+T T L E K Sbjct: 293 IELIKNVTGDFPILLLDDVMSELDNYRQTELLKMIIAENVQTFITTTSLEHLSKLPEELK 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFTVNQGTI 361 >gi|229035150|ref|ZP_04189096.1| DNA replication and repair protein recF [Bacillus cereus AH1271] gi|228728216|gb|EEL79246.1| DNA replication and repair protein recF [Bacillus cereus AH1271] Length = 375 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|152973858|ref|YP_001373375.1| recombination protein F [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189039617|sp|A7GJS2|RECF_BACCN RecName: Full=DNA replication and repair protein recF gi|152022610|gb|ABS20380.1| DNA replication and repair protein RecF [Bacillus cytotoxicus NVH 391-98] Length = 373 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 165/375 (44%), Gaps = 12/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEDLNLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +++G + S+ LE + + ++N++ + + + + + Sbjct: 61 IRWDED-----YGKIKGRLQKRNSSVSLELNISKKGKKAKLNELEQQKLSQYIGEMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RRRFLD + I P + + +++++ RN LL +G + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKAMQGKNEETM 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSF 240 Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 LDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDL 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + + Sbjct: 236 SKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALSLK 294 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359 LA LI PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LAEIELIYAEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHETL 353 Query: 360 ETAKFMRISNHQALC 374 + AK + + + C Sbjct: 354 KKAKTIHVKSGTVDC 368 >gi|228911332|ref|ZP_04075136.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL 200] gi|228848350|gb|EEM93200.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL 200] Length = 375 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 164/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISKIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ + G KI R E + L + + +++ +D Sbjct: 176 TMLDVFTLQLIDHGAKILQKRFEFLQLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKDAKTIHVTNGTVDC 370 >gi|205371909|ref|ZP_03224729.1| recombination protein F [Bacillus coahuilensis m4-4] Length = 372 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 169/378 (44%), Gaps = 14/378 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L++ +RNY + L F+ + +F+G N GKTNI+E+I L+ + R ++ D+ Sbjct: 1 MFIQELSVENYRNYETESLEFENRVNVFLGQNAQGKTNIMESIYVLAMAKSHRTSNDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +AR++G + SI LE + + ++N + + + ++ + Sbjct: 61 IRWDSE-----YARIKGRIQKRNGSIPLELTISKKGKKAKLNHLEQSKLSQYIGNMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P + G RRRF+D + + P + + + ++++ RN L + D Sbjct: 116 FAPEDLNLVKGSPQVRRRFIDMEIGQVSPVYLHDINQYNKILQQRNSYLKQAQQRKKVDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q ++ VKI R + ++ L + + +S + DQ Sbjct: 176 TMLDVLTDQFIQVAVKIVQKRFQFVHLLEEWAKPIHSGISRNLEELTISYKPSVHVSEDQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + E + ++ + R+ + TL GPHR DL + + GS G+Q+ + Sbjct: 236 DWSKMIEVFEERTKEVREREKERGVTLFGPHRDDLEFRVNGRDV-QTFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357 + LA LI + G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 VKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSTEGIDHQ 353 Query: 358 LNETAKFMRISNHQALCI 375 + A R+ + + + Sbjct: 354 TLKEAATFRVDSGSIIKV 371 >gi|229014659|ref|ZP_04171773.1| DNA replication and repair protein recF [Bacillus mycoides DSM 2048] gi|229065152|ref|ZP_04200445.1| DNA replication and repair protein recF [Bacillus cereus AH603] gi|229170196|ref|ZP_04297882.1| DNA replication and repair protein recF [Bacillus cereus AH621] gi|228613297|gb|EEK70436.1| DNA replication and repair protein recF [Bacillus cereus AH621] gi|228716181|gb|EEL67900.1| DNA replication and repair protein recF [Bacillus cereus AH603] gi|228746670|gb|EEL96559.1| DNA replication and repair protein recF [Bacillus mycoides DSM 2048] Length = 375 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 164/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + ++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----YGNIKGRLQRRNSSVSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TL+GPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVEGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|30260199|ref|NP_842576.1| recombination protein F [Bacillus anthracis str. Ames] gi|47525258|ref|YP_016607.1| recombination protein F [Bacillus anthracis str. 'Ames Ancestor'] gi|49183043|ref|YP_026295.1| recombination protein F [Bacillus anthracis str. Sterne] gi|65317472|ref|ZP_00390431.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Bacillus anthracis str. A2012] gi|165873033|ref|ZP_02217654.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0488] gi|167635057|ref|ZP_02393374.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0442] gi|167641747|ref|ZP_02399990.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0193] gi|170689465|ref|ZP_02880655.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0465] gi|170707533|ref|ZP_02897986.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0389] gi|177655288|ref|ZP_02936842.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0174] gi|190569289|ref|ZP_03022183.1| DNA replication and repair protein RecF [Bacillus anthracis Tsiankovskii-I] gi|218901210|ref|YP_002449044.1| DNA replication and repair protein RecF [Bacillus cereus AH820] gi|227812682|ref|YP_002812691.1| DNA replication and repair protein RecF [Bacillus anthracis str. CDC 684] gi|228949214|ref|ZP_04111482.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229602868|ref|YP_002864661.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0248] gi|254687067|ref|ZP_05150925.1| recombination protein F [Bacillus anthracis str. CNEVA-9066] gi|254742124|ref|ZP_05199811.1| recombination protein F [Bacillus anthracis str. Kruger B] gi|254755966|ref|ZP_05207998.1| recombination protein F [Bacillus anthracis str. Vollum] gi|254761354|ref|ZP_05213376.1| recombination protein F [Bacillus anthracis str. Australia 94] gi|51316217|sp|Q6I535|RECF_BACAN RecName: Full=DNA replication and repair protein recF gi|226737768|sp|B7JJC0|RECF_BACC0 RecName: Full=DNA replication and repair protein recF gi|254790460|sp|C3P8P8|RECF_BACAA RecName: Full=DNA replication and repair protein recF gi|254790461|sp|C3LIC5|RECF_BACAC RecName: Full=DNA replication and repair protein recF gi|30253520|gb|AAP24062.1| DNA replication and repair protein RecF [Bacillus anthracis str. Ames] gi|47500406|gb|AAT29082.1| DNA replication and repair protein RecF [Bacillus anthracis str. 'Ames Ancestor'] gi|49176970|gb|AAT52346.1| DNA replication and repair protein RecF [Bacillus anthracis str. Sterne] gi|164711245|gb|EDR16801.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0488] gi|167510301|gb|EDR85704.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0193] gi|167529531|gb|EDR92281.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0442] gi|170127529|gb|EDS96403.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0389] gi|170666567|gb|EDT17340.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0465] gi|172080215|gb|EDT65307.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0174] gi|190559596|gb|EDV13587.1| DNA replication and repair protein RecF [Bacillus anthracis Tsiankovskii-I] gi|218536673|gb|ACK89071.1| DNA replication and repair protein RecF [Bacillus cereus AH820] gi|227005823|gb|ACP15566.1| DNA replication and repair protein RecF [Bacillus anthracis str. CDC 684] gi|228810497|gb|EEM56850.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229267276|gb|ACQ48913.1| DNA replication and repair protein RecF [Bacillus anthracis str. A0248] Length = 375 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|206970379|ref|ZP_03231332.1| DNA replication and repair protein RecF [Bacillus cereus AH1134] gi|206734956|gb|EDZ52125.1| DNA replication and repair protein RecF [Bacillus cereus AH1134] Length = 375 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNNSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|229094603|ref|ZP_04225670.1| DNA replication and repair protein recF [Bacillus cereus Rock3-42] gi|229159053|ref|ZP_04287109.1| DNA replication and repair protein recF [Bacillus cereus ATCC 4342] gi|300118806|ref|ZP_07056526.1| recombination protein F [Bacillus cereus SJ1] gi|228624472|gb|EEK81243.1| DNA replication and repair protein recF [Bacillus cereus ATCC 4342] gi|228688850|gb|EEL42681.1| DNA replication and repair protein recF [Bacillus cereus Rock3-42] gi|298723774|gb|EFI64496.1| recombination protein F [Bacillus cereus SJ1] Length = 375 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TL+GPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|325698042|gb|EGD39923.1| recombination protein F [Streptococcus sanguinis SK160] Length = 364 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 160/371 (43%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENELV-----VSGILEKKTSKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ E G ++ R++ + L S + + +L++ Q +L Sbjct: 176 TVLDDQLVEYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVKYLSSIPLHQ-IDSL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYCSSLLSNRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD +++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q + Sbjct: 352 IFTIQQGQIIS 362 >gi|52145206|ref|YP_081623.1| recombination protein F [Bacillus cereus E33L] gi|81689896|sp|Q63HG4|RECF_BACCZ RecName: Full=DNA replication and repair protein recF gi|51978675|gb|AAU20225.1| DNA replication and repair protein [Bacillus cereus E33L] Length = 375 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TL+GPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|320547699|ref|ZP_08041984.1| recombination protein F [Streptococcus equinus ATCC 9812] gi|320447774|gb|EFW88532.1| recombination protein F [Streptococcus equinus ATCC 9812] Length = 364 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 157/369 (42%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY + L F +F+G N GKTN LEAI FLS R R ++ Sbjct: 1 MWIQKIALKNYRNYLNNELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRLDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G + ++ LE R +IN + + + + + Sbjct: 61 IHFQEKEL-----HVSGNLQRSTGAVPLEIDLSSKGRVTKINHLKQAKLSDYIGVMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D + Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNTYLKTAEKVDIDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A+ G ++ R++ I L Y + L + FD+ + Sbjct: 176 AVLDEQLADFGSRVMEHRLDFIANLEKEADCYHYTISDGLEHLKIHYLSSVPFDK-KSDI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE++ K L K D + T GPHR DL D + GS G+ + +++ + +A Sbjct: 235 KEQFLKTLERNHKRDIFKKNTGAGPHRDDLEFFIND--MPANFGSQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI N TG PILLLD++ + LD ++ L +++ Q F+T T L + K Sbjct: 293 IELIKNVTGDYPILLLDDVMSELDNYRQTELLKMIIAKNVQTFITTTSLEHLSQLPKELK 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFTVTKGHI 361 >gi|229176168|ref|ZP_04303660.1| DNA replication and repair protein recF [Bacillus cereus MM3] gi|228607327|gb|EEK64657.1| DNA replication and repair protein recF [Bacillus cereus MM3] Length = 375 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|254724150|ref|ZP_05185935.1| recombination protein F [Bacillus anthracis str. A1055] Length = 375 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFLGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|150398584|ref|YP_001329051.1| recombination protein F [Sinorhizobium medicae WSM419] gi|150030099|gb|ABR62216.1| DNA replication and repair protein RecF [Sinorhizobium medicae WSM419] Length = 409 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 184/372 (49%), Positives = 253/372 (68%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +S+FRNYA+ L D +H + G+NG GKTN++EAISFLSPGRG RRA+ Sbjct: 36 MPHKVFLTRLKLSDFRNYATAALDLDQRHVVLTGENGAGKTNLMEAISFLSPGRGLRRAA 95 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+G+ FS FA V+GMEG +I + ++ R L+IN R VDELN HL Sbjct: 96 YADVVRVGAADGFSVFAAVDGMEGPVEIGTGTQGSEEGHSRRLRINGTAARTVDELNDHL 155 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR +F+R MR RNRLL+E D Sbjct: 156 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 215 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W S+IE +MA LG+ + +AR EM+ LS+L+ FP +LSL GFLD Sbjct: 216 AWVSAIEREMAGLGISMALARQEMLGLLSALVDRSRTDGTFPSARLSLAGFLDDCAGIPA 275 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E Y L DGR D+ + RTL GPHRSDL++ + +K I STGEQK +LVG+ Sbjct: 276 FELEERYLAMLADGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 335 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V +G Q FMTGTD+++F++L E Sbjct: 336 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQAFMTGTDQTMFEALGE 395 Query: 361 TAKFMRISNHQA 372 A ++ ++N + Sbjct: 396 RAHYLAVANGRV 407 >gi|229164443|ref|ZP_04292371.1| DNA replication and repair protein recF [Bacillus cereus R309803] gi|228619048|gb|EEK75946.1| DNA replication and repair protein recF [Bacillus cereus R309803] Length = 375 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 VRWDEE-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|229099919|ref|ZP_04230842.1| DNA replication and repair protein recF [Bacillus cereus Rock3-29] gi|229118982|ref|ZP_04248327.1| DNA replication and repair protein recF [Bacillus cereus Rock1-3] gi|228664507|gb|EEL20003.1| DNA replication and repair protein recF [Bacillus cereus Rock1-3] gi|228683534|gb|EEL37489.1| DNA replication and repair protein recF [Bacillus cereus Rock3-29] Length = 375 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R + ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFDFLHLLQEWAAPIHRGISRGLEELEIIYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKDAKTIHVTNGTVDC 370 >gi|327467748|gb|EGF13242.1| recombination protein F [Streptococcus sanguinis SK330] Length = 364 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 160/371 (43%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + +L++ Q +L Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVKYLSSIPLHQ-IDSL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYRSSLLSSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD +++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q + Sbjct: 352 IFTIQQGQIIS 362 >gi|254735167|ref|ZP_05192877.1| recombination protein F [Bacillus anthracis str. Western North America USA6153] Length = 375 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-LQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|228924237|ref|ZP_04087508.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835455|gb|EEM80825.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 375 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ + G +I R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIDHGARILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|327463824|gb|EGF10140.1| recombination protein F [Streptococcus sanguinis SK1057] Length = 364 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENDLL-----VSGLLEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + +L++ Q L Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVKYLSSIPLHQ-IDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYRSSLLSSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD +++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q L Sbjct: 352 IFTIQQGQILS 362 >gi|110632365|ref|YP_672573.1| recombination protein F [Mesorhizobium sp. BNC1] gi|110283349|gb|ABG61408.1| DNA replication and repair protein RecF [Chelativorans sp. BNC1] Length = 391 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 166/378 (43%), Positives = 225/378 (59%), Gaps = 4/378 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 ++ I L +S FRNYASL L + G+NG GKTN+LEAISFLSPGRG RRA+ Sbjct: 14 PAQVHIAKLTLSNFRNYASLSLGLQPGAVVLTGENGAGKTNLLEAISFLSPGRGLRRATL 73 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNK 118 + RIGS F+ A VEG G I S R ++I+ R + + Sbjct: 74 EEAMRIGSSDGFAVHAEVEGPYGSCRIGTGTAGTAAEGSESGRRVRIDGEPQRSAEAMLD 133 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 LR+ WL P+MD +F+G S +RRRFLDR+V AIDP H RR D+E+ MR RNRL + Sbjct: 134 WLRVIWLTPAMDALFTGASADRRRFLDRLVLAIDPAHGRRAADYEKAMRSRNRLFADDVR 193 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D +W +IE QMAE GV I AR EM+ L+++I FP L+L G +D + Sbjct: 194 DDAWFDAIEMQMAETGVAIAAARAEMLRLLAAMIERLPAGSPFPKALLALEGTVDEAIAR 253 Query: 239 SFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + ++E++ +L + R D + R L GPHRS+L+V + K + STGEQK +LV Sbjct: 254 NPAVEVEEDFRTRLREERPRDRAAGRALEGPHRSELLVRHAPKDMPAESCSTGEQKALLV 313 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 G+ LAHARL + +G APILLLDEISAH D D+R ALF I+ D+ Q FMTGT++++F S Sbjct: 314 GLVLAHARLTAELSGMAPILLLDEISAHFDADRRAALFDILEDLNCQAFMTGTERALFSS 373 Query: 358 LNETAKFMRISNHQALCI 375 L A+F+ +S + Sbjct: 374 LEGRAQFLAVSGGAIQSV 391 >gi|332365084|gb|EGJ42849.1| recombination protein F [Streptococcus sanguinis SK355] Length = 364 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 158/371 (42%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENELL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHILKQRNAYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + +L++ Q L Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVKYLSSIPLHQ-IDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYCSSLLSSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD ++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNKRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q + Sbjct: 352 IFTIQQGQIIS 362 >gi|332363594|gb|EGJ41375.1| recombination protein F [Streptococcus sanguinis SK1059] Length = 364 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNSYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + KL++ Q L Sbjct: 176 TVLDEQLVDYGCRVIKHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHQ-IDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD +++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q + Sbjct: 352 IFTIQQGQIMS 362 >gi|229015409|ref|ZP_04172415.1| DNA replication and repair protein recF [Bacillus cereus AH1273] gi|229026933|ref|ZP_04183256.1| DNA replication and repair protein recF [Bacillus cereus AH1272] gi|228734391|gb|EEL85062.1| DNA replication and repair protein recF [Bacillus cereus AH1272] gi|228745888|gb|EEL95884.1| DNA replication and repair protein recF [Bacillus cereus AH1273] Length = 375 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 164/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFITEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----YGQIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ LD Sbjct: 176 TMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSLDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + + N C Sbjct: 354 TLKEAKTIHVMNGTVDC 370 >gi|228961756|ref|ZP_04123359.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797950|gb|EEM44960.1| DNA replication and repair protein recF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 375 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + Q+ E G KI R E ++ L + + +++ +D Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE Y + ++ + TLIGPHR DL K + + GS G+Q+ + Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRSTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353 Query: 358 LNETAKFMRISNHQALC 374 + AK + ++N C Sbjct: 354 TLKEAKTIHVTNGTVDC 370 >gi|163790922|ref|ZP_02185345.1| recombination protein F [Carnobacterium sp. AT7] gi|159873764|gb|EDP67845.1| recombination protein F [Carnobacterium sp. AT7] Length = 373 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 168/375 (44%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++S +RNY ++F +F+G+N GKT+++EAI L+ R R A+ + Sbjct: 1 MLLKEIHLSNYRNYEHAEVIFSKGINVFLGENAQGKTSLMEAIYVLAMARSHRTANDKET 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R FARV G + S LE + + + N + + + E +L + Sbjct: 61 IRWDQD-----FARVSGRIQKKNTSFPLEISISKKGKKAKFNHLEQKKLSEYIGNLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + + P + ++ ++ L++ RN L + D Sbjct: 116 FAPEDLSLVKGSPSVRRKFLDMEMGQMSPIYLHHLVQYQHLLKQRNSYLKQLSLKKEKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 ++ + Q+AE G I + R + L + + + +++ L + Sbjct: 176 TFLDILTEQLAEYGAAILLERFSFVKKLENWAKPVHSEISKQKELLEIGYACSLKITDET 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S L + GR+ + R T+ GPHR DL + + +GS G+Q+ + Sbjct: 236 SKEQLYSDLMNAFAQGRQRELEQRTTIFGPHRDDLKFTVNGRNV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA L+ TG P+LLLD++ + LD++++ L + + + Q F+T T + Sbjct: 295 VKLAEIDLMKEMTGEYPVLLLDDVLSELDDERQTHLLKAIQNK-VQTFLTTTSLDGIKKN 353 Query: 358 LNETAKFMRISNHQA 372 + ET K I N Q Sbjct: 354 MLETPKIFLIDNGQV 368 >gi|324991876|gb|EGC23799.1| recombination protein F [Streptococcus sanguinis SK405] gi|324996234|gb|EGC28144.1| recombination protein F [Streptococcus sanguinis SK678] gi|327458500|gb|EGF04850.1| recombination protein F [Streptococcus sanguinis SK1] gi|327471598|gb|EGF17041.1| recombination protein F [Streptococcus sanguinis SK408] gi|327490328|gb|EGF22115.1| recombination protein F [Streptococcus sanguinis SK1058] Length = 364 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEAI FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + KL++ Q L Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTIKYLSSIPL-QKIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD +++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q + Sbjct: 352 IFTIQQGQIMS 362 >gi|325695750|gb|EGD37649.1| recombination protein F [Streptococcus sanguinis SK150] gi|328945164|gb|EGG39319.1| recombination protein F [Streptococcus sanguinis SK1087] Length = 364 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 158/371 (42%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENDLL-----VSGLLEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + KL++ Q L Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPL-QKIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GP R D+ + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPQRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD +++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-NIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q + Sbjct: 352 IFTIQQGQIVS 362 >gi|325686466|gb|EGD28495.1| recombination protein F [Streptococcus sanguinis SK72] Length = 364 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + KL++ Q L Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPL-QKIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD +++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q + Sbjct: 352 IFTIQQGQIMS 362 >gi|325689344|gb|EGD31350.1| recombination protein F [Streptococcus sanguinis SK115] Length = 364 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENDLL-----VSGLLEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNTYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + +L++ Q L Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVKYLSSIPLHQ-IDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD +++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q + Sbjct: 352 IFTIQQGQIMS 362 >gi|324989568|gb|EGC21514.1| recombination protein F [Streptococcus sanguinis SK353] Length = 364 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 158/371 (42%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEAI FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + KL++ Q L Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHQ-IDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYRFSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD ++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q + Sbjct: 352 IFTIQQGQIMS 362 >gi|306828609|ref|ZP_07461803.1| recombination protein F [Streptococcus mitis ATCC 6249] gi|304429217|gb|EFM32303.1| recombination protein F [Streptococcus mitis ATCC 6249] Length = 363 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MWLQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + GM SI LE R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGMLQKKTGSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ E G ++ R++ I L + + + +LS++ F + L Sbjct: 176 SVLDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNQSEELSISYQSTVNF-TNEEVL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 MDSFKMALEKSRSRDLFKKNTGVGPHRDDIAFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I N + Sbjct: 352 IFNIQNGRI 360 >gi|218674981|ref|ZP_03524650.1| recombination protein F [Rhizobium etli GR56] Length = 354 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 176/353 (49%), Positives = 243/353 (68%) Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE 80 + L D +H + G+NG GKTN++EA+S LSPGRG RRA+Y D+TR+G+ FS FA ++ Sbjct: 1 MSLTLDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAAYGDITRVGATGGFSIFAALD 60 Query: 81 GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER 140 GMEG +I +E ++ + R L+IN + DEL HLR+ WL P+MD +F+G S +R Sbjct: 61 GMEGEVEIGTGIEAGEETTTRRLRINGTAAKTADELTDHLRLLWLTPAMDGLFTGASSDR 120 Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 RRFLDR+V ++DP H RR DFER MR RN+LL EG FD SW + IE QMA LG+ + +A Sbjct: 121 RRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDPSWLAGIEEQMASLGIAMALA 180 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 R EM+ L+ LI E + FP L L+GF+DG+F + L++EYA L + R D+ Sbjct: 181 RQEMLGLLTRLIEERPENSPFPSASLQLSGFMDGQFSRPSVDLEDEYAAMLAESRYRDAG 240 Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320 + RTL GPHR+DLIV + +KA+ STGEQK +LVG+ LAHARL+ N TG APILLLD Sbjct: 241 AGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLLD 300 Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 EI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + A+F +++ + Sbjct: 301 EIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRTMFSALADRAQFFTVADGKVF 353 >gi|332364154|gb|EGJ41931.1| recombination protein F [Streptococcus sanguinis SK49] Length = 364 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEA+ FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTDNDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVIKQRNAYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + KL++ Q L Sbjct: 176 TVLDDQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPL-QKIDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD +++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q + Sbjct: 352 IFTIQQGQIVS 362 >gi|323350818|ref|ZP_08086477.1| recombination protein F [Streptococcus sanguinis VMC66] gi|322122992|gb|EFX94695.1| recombination protein F [Streptococcus sanguinis VMC66] Length = 364 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 158/371 (42%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEAI FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + KL++ Q L Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHQ-IDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYRFSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD ++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I + + Sbjct: 352 IFTIQQGEIMS 362 >gi|149182287|ref|ZP_01860766.1| recombination protein F [Bacillus sp. SG-1] gi|148849979|gb|EDL64150.1| recombination protein F [Bacillus sp. SG-1] Length = 372 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 160/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY S+ + F+ + +G+N GKTNI+E+I L+ + R ++ D+ Sbjct: 1 MYIEEIQLKNYRNYDSVDISFENNVNVILGENAQGKTNIMESIYVLAMAKSHRTSNDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A+++G + S+ LE + + + N + + + + ++ + Sbjct: 61 IRWDEE-----YAKIKGRIKKHNGSLPLELVISKKGKKAKSNHIEQKKLSQYVGNMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + + P + + ++++++ RN L D Sbjct: 116 FAPEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDIALYQKILQQRNHYLKMLQTRKQKDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+ E+ KI R E I L + + + +D DQ Sbjct: 176 TMLDVLTEQLTEVSAKIIRKRFEFIELLQEWARPIHSGISRGLETLDIQYKPSIDVCDDQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + + A+K R+ + TL GPHR DL D+ + GS G+Q+ + Sbjct: 236 DWSKMIDIIAEKFHTIRQREIDRGVTLAGPHRDDLQFFVNDRDV-QTFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 LKLAEIELIHSEIKEYPILLLDDVLSELDDFRQSHLLNTIQGK-VQTFVTTTSVDGIDHQ 353 Query: 358 LNETAKFMRISNHQA 372 A + Sbjct: 354 TLNDATTFEVETGHI 368 >gi|322386450|ref|ZP_08060079.1| recombination protein F [Streptococcus cristatus ATCC 51100] gi|321269536|gb|EFX52467.1| recombination protein F [Streptococcus cristatus ATCC 51100] Length = 371 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 91/367 (24%), Positives = 161/367 (43%), Gaps = 10/367 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L I FRNY + + FD IF+G N GKTNILEAI FL+ R R + D+ Sbjct: 1 MWLKTLKIKHFRNYQAAEVDFDPGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRTDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +E G + I+L + R +IN + + + + + Sbjct: 61 IHFQEKN-LQISGIIEKTTGKIPLDIELTPKG----RITKINHLKQGKLSDYIGIVNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPALRRKFIDIELGQIKPIYLADLSSYNHVLKQRNAYLKANDKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L E + KL++ F L Sbjct: 176 SVLDEQLIDFGCRVMQHRLDFIEKLEDFAQESHSDISQGKEKLTIKYVSSVPFSC-LENL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + L + R+ D + T +GPHR D+ D + GS G+ + +++ + LA Sbjct: 235 EASFRSALSESRRRDLFKKNTGVGPHRDDINFFIND--MDAGFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD ++ L ++ Q F+T T +L + Sbjct: 293 IKLIESLTKDTPILLLDDVMSELDNMRQLKLLETISQ-NIQTFITTTSLDHLQNLPDDIN 351 Query: 364 FMRISNH 370 +IS Sbjct: 352 IFQISQG 358 >gi|125719147|ref|YP_001036280.1| recombination protein F [Streptococcus sanguinis SK36] gi|166221875|sp|A3CRC5|RECF_STRSV RecName: Full=DNA replication and repair protein recF gi|125499064|gb|ABN45730.1| DNA replication and repair protein recF, putative [Streptococcus sanguinis SK36] Length = 364 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 158/371 (42%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEAI FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDIQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + KL++ Q L Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHQ-IDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L RK D + T +GPHR D+ + GS G+ + +++ + LA Sbjct: 235 EETYRFSLIISRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI + T PILLLD++ + LD ++ L ++ Q F+T T +L + K Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351 Query: 364 FMRISNHQALC 374 I Q + Sbjct: 352 IFTIQQGQIMS 362 >gi|322377917|ref|ZP_08052405.1| DNA replication and repair protein RecF [Streptococcus sp. M334] gi|321281093|gb|EFX58105.1| DNA replication and repair protein RecF [Streptococcus sp. M334] Length = 365 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 166/370 (44%), Gaps = 10/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ +++ FRNY ++ F+ + +F+G N GKTN+LEAI FLS R R + ++ Sbjct: 1 MWLQHISLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLSLTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ S+ LE + + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSVPLEIKLTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSTQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L + + + + +LS++ K L Sbjct: 176 SVLDEQLVDYGCRVMNHRLDFIKKLEAFGRKKHFELSNQIEELSISYQSSVKI-TDKEDL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQAL 373 I Q + Sbjct: 352 IFTIQGGQVV 361 >gi|328956386|ref|YP_004373772.1| DNA replication and repair protein RecF [Carnobacterium sp. 17-4] gi|328672710|gb|AEB28756.1| DNA replication and repair protein RecF [Carnobacterium sp. 17-4] Length = 373 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 90/375 (24%), Positives = 169/375 (45%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++S +RNY ++F +F+G+N GKT+++EAI L+ R R A+ + Sbjct: 1 MLLKEIHLSNYRNYEHAEVIFSKGINVFLGENAQGKTSLMEAIYVLAMARSHRTANDKET 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R FARV G + S LE + + + N + + + E +L + Sbjct: 61 IRWEQE-----FARVSGRIQKKNTSFPLEISISKKGKKAKFNHLEQKKLSEYIGNLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + + P + ++ ++ L++ RN L + D Sbjct: 116 FAPEDLSLVKGSPSVRRKFLDMEMGQMSPIYLHHLVQYQHLLKQRNSYLKQLSLKKVKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLDGKFDQ 238 ++ + Q+AE G I + R I L + + + +++ + L + Sbjct: 176 TFLDILTEQLAEFGAAILVERFSFIKKLENWAKPVHAEISRQKEILEIGYSCSLKITNET 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + GR+ + R T+ GPHR DL + + +GS G+Q+ + Sbjct: 236 DKKQIYSDLMNAYTQGRQRELEQRTTIFGPHRDDLKFSVNGRNV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA L+ TG P+LLLD++ + LD++++ L + + + Q F+T T ++ Sbjct: 295 VKLAEIDLMKEMTGEYPVLLLDDVLSELDDERQTHLLKAIQNK-VQTFLTTTSLDGIKEN 353 Query: 358 LNETAKFMRISNHQA 372 + ET K I N Q Sbjct: 354 MLETPKIFLIDNGQV 368 >gi|270291841|ref|ZP_06198056.1| DNA replication and repair protein RecF [Streptococcus sp. M143] gi|270279369|gb|EFA25211.1| DNA replication and repair protein RecF [Streptococcus sp. M143] Length = 365 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 164/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MWLQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSNQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ E G ++ R++ I L + + + + +LS++ F + L Sbjct: 176 SVLDDQLVEYGCRVIKHRIKFIKDLENFGQKKHLEISNQSEELSISYQSTVNF-TNEEVL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 MDSFKMALEKSRSRDLFKKNTGVGPHRDDIAFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITKESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I N + Sbjct: 352 IFNIRNGKV 360 >gi|296875531|ref|ZP_06899603.1| recombination protein F [Streptococcus parasanguinis ATCC 15912] gi|296433455|gb|EFH19230.1| recombination protein F [Streptococcus parasanguinis ATCC 15912] Length = 364 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 94/369 (25%), Positives = 160/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L+I FRNY L + F IF+G N GKTNILE+I FL+ R R + D+ Sbjct: 1 MWLKQLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F +V G + LE R ++N + + H+ + Sbjct: 61 IYFESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 P ++ G RR+F+D + + P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +++Q+A G ++ R+E I L + E + + LS+ F + + Sbjct: 176 EVLDSQLASFGSRVIYHRLEFIKKLEAKAKEKHTRLSDNKEDLSIQYQ-STVFSEDGNDI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E++ L R+ D + T IGPHR DL + GS G+ + V++ + LA Sbjct: 235 EEQFLSMLEKNRQKDIFRKTTSIGPHRDDLAFFINNMN--ATFGSQGQHRSVVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ T PILLLD++ + LD ++ L +++ Q F+T T L E K Sbjct: 293 IELMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTTTLDHLKELPEELK 351 Query: 364 FMRISNHQA 372 I Sbjct: 352 IFTIQAGHI 360 >gi|313889502|ref|ZP_07823148.1| DNA replication and repair protein RecF [Streptococcus pseudoporcinus SPIN 20026] gi|313122114|gb|EFR45207.1| DNA replication and repair protein RecF [Streptococcus pseudoporcinus SPIN 20026] Length = 364 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 161/369 (43%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L ++ +RNY ++ F +F+G+N GKTN LEAI F++ R R ++ Sbjct: 1 MWLKELTLTNYRNYEQIQTKFVPGLNVFIGNNAQGKTNFLEAIYFIALTRSHRTRIDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F +V G I LE + R +IN + + + ++++ Sbjct: 61 IH-----FLKDDLKVSGKIERTSGIISLEIALTKKGRITKINSLKQAKLSDYIGNMKVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L +S + Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSQYNYVLKQRNTYLKTASSINSDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+A+ G ++ R++ I AL + + L+L+ + ++ Sbjct: 176 DVLDEQLADYGTRVIHQRMQFIEALEEEAHRHHFAISDGLEDLTLSYQSSIVLEP-KESI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + + L + R+ D + T +GPHR D++ D S G+ + +++ + +A Sbjct: 235 KERFIEALQNNRQKDMFKKNTSVGPHRDDILFYINDMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L + Q F+T T SL K Sbjct: 293 VSLMKELTGENPILLLDDVMSELDNLRQTKLLETIIQEHVQTFITTTSLEHLSSLPPDIK 352 Query: 364 FMRISNHQA 372 +S Sbjct: 353 TFYVSQGTI 361 >gi|323487684|ref|ZP_08092942.1| hypothetical protein GPDM_00015 [Planococcus donghaensis MPA1U2] gi|323398418|gb|EGA91206.1| hypothetical protein GPDM_00015 [Planococcus donghaensis MPA1U2] Length = 370 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 161/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +RNY SL L F + +F+G+N GKTN++E++ LS + R ++ ++ Sbjct: 1 MRIDRLELVNYRNYESLELEFSPEINVFIGENAQGKTNVMESLYVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + +++ + LE + + ++N + R + + L + Sbjct: 61 IRWDAD-----YGKIKADVFRKYGKLPLEITLSKKGKKAKVNHLEQRRLSDYIGQLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180 P + G RRRF+D + I P + ++++++L++ RN +L + Y + Sbjct: 116 FAPEDLHLVKGSPQVRRRFIDMEIGQISPVYLHDLVNYQKLLKQRNHILKQHYGKQTIND 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 Q E VKI R + + L + +L + + Sbjct: 176 VMFEVYTEQFIEAAVKIIRKRYQFMELLQKWAEPIHHGISRGLEQLQIRYQPISGLKPEW 235 Query: 241 --CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + +KL + RK + TL+GPHR +L + +GS G+Q+ + Sbjct: 236 TPEEMASFLEQKLIEVRKREIERGVTLVGPHRDELQFFVNGYDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI G AP+LLLD++ + LD+ +++ L + Q F+T T Sbjct: 295 LKLAEIELIKQEVGEAPVLLLDDVLSELDDYRQSHLLNTIKG-SVQTFVTTTSVEGIQHE 353 Query: 358 LNETAKFMRISNHQA 372 + A+ +S+ Sbjct: 354 TIQNARLFEVSHGTV 368 >gi|76787191|ref|YP_330704.1| recombination protein F [Streptococcus agalactiae A909] gi|77406514|ref|ZP_00783567.1| DNA replication and repair protein RecF [Streptococcus agalactiae H36B] gi|77411774|ref|ZP_00788110.1| DNA replication and repair protein RecF [Streptococcus agalactiae CJB111] gi|97180994|sp|Q3JYE9|RECF_STRA1 RecName: Full=DNA replication and repair protein recF gi|76562248|gb|ABA44832.1| DNA replication and repair protein RecF [Streptococcus agalactiae A909] gi|77162165|gb|EAO73140.1| DNA replication and repair protein RecF [Streptococcus agalactiae CJB111] gi|77174886|gb|EAO77702.1| DNA replication and repair protein RecF [Streptococcus agalactiae H36B] Length = 369 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 162/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ +RNY ++ F IF+G N GKTN LEAI FL+ R R S ++ Sbjct: 1 MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ++ G + L+ + R ++N + + + + + Sbjct: 61 VHFKHHD-----VQITGEVIRKSGHLSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+FLD + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+A+ G ++ R + I AL+ ++ + LS+ +F ++ Sbjct: 176 SVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEF-TDKSSI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + +L D + T IGPHR D+ D I GS G+Q+ +++ + LA Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI T PILLLD++ + LD ++ L + + Q F+T T +L + K Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351 Query: 364 FMRISNHQA 372 +S+ Sbjct: 352 IFNVSDGTI 360 >gi|94995364|ref|YP_603462.1| recombination protein F [Streptococcus pyogenes MGAS10750] gi|166221872|sp|Q1J443|RECF_STRPF RecName: Full=DNA replication and repair protein recF gi|94548872|gb|ABF38918.1| DNA replication and repair protein recF [Streptococcus pyogenes MGAS10750] Length = 368 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLFELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ ++ Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTSI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR DL S G+ + +++ + +A Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E + Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTV 361 >gi|306826174|ref|ZP_07459509.1| recombination protein F [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431650|gb|EFM34631.1| recombination protein F [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 363 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 160/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MWLQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLLQKKTGSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ E G ++ R++ I L + + + +LS+ F L Sbjct: 176 SVLDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNQSEELSIFYQSSVNF-TDEEQL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 TNSFKMALDKSRSRDLFKKNTGVGPHRDDITFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I N Q Sbjct: 352 IFNIQNGQI 360 >gi|19747036|ref|NP_608172.1| recombination protein F [Streptococcus pyogenes MGAS8232] gi|94991484|ref|YP_599584.1| recombination protein F [Streptococcus pyogenes MGAS10270] gi|306826422|ref|ZP_07459735.1| recombination protein F [Streptococcus pyogenes ATCC 10782] gi|25453247|sp|Q8NYZ4|RECF_STRP8 RecName: Full=DNA replication and repair protein recF gi|166221871|sp|Q1JEB8|RECF_STRPD RecName: Full=DNA replication and repair protein recF gi|19749296|gb|AAL98671.1| recF protein [Streptococcus pyogenes MGAS8232] gi|94544992|gb|ABF35040.1| DNA replication and repair protein recF [Streptococcus pyogenes MGAS10270] gi|304431386|gb|EFM34382.1| recombination protein F [Streptococcus pyogenes ATCC 10782] Length = 368 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + Sbjct: 176 AVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR DL S G+ + +++ + +A Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E + Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTV 361 >gi|56808225|ref|ZP_00365998.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Streptococcus pyogenes M49 591] gi|209560278|ref|YP_002286750.1| recombination protein F [Streptococcus pyogenes NZ131] gi|226737844|sp|B5XJC1|RECF_STRPZ RecName: Full=DNA replication and repair protein recF gi|209541479|gb|ACI62055.1| Recombination protein F [Streptococcus pyogenes NZ131] Length = 368 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR DL S G+ + +++ + +A Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E + Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTV 361 >gi|262281653|ref|ZP_06059422.1| recombination protein F [Streptococcus sp. 2_1_36FAA] gi|262262107|gb|EEY80804.1| recombination protein F [Streptococcus sp. 2_1_36FAA] Length = 361 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 92/369 (24%), Positives = 163/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRNY + F + +F+G N GKTNILE+I FL+ R R S D Sbjct: 1 MWLKSLTLKHFRNYQDAEINFHSGLNVFLGQNAQGKTNILESIYFLALTRSHRTRSDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +V G+ +I L+ R +IN + + + + + Sbjct: 61 IHFQEKDL-----KVSGILEKKTGTIPLDIELTAKGRITKINHLKQNRLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPLYLADLSNYNHVLKQRNSYLKNSQKIDENFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ E G ++ R++ + L E + L++ Q ++ Sbjct: 176 SVLDEQLIEYGCRVVKHRLDFLKKLEIFAQEKHLDISQKKETLTIDYLSSVPL-QDIDSI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + + L RK D + T +GPHR D+ + +GS G+ + V++ + LA Sbjct: 235 EESFRQSLSKNRKRDLFKQNTGVGPHRDDIAFFIN--QMDANYGSQGQHRSVVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI N T +PILLLD++ + LD D++ L ++ Q F+T T +L + K Sbjct: 293 IKLIENITKESPILLLDDVMSELDNDRQLKLLETISQ-EIQTFITTTTLEHLKNLPKDIK 351 Query: 364 FMRISNHQA 372 ISN Sbjct: 352 IFEISNGNI 360 >gi|332523373|ref|ZP_08399625.1| DNA replication and repair protein RecF [Streptococcus porcinus str. Jelinkova 176] gi|332314637|gb|EGJ27622.1| DNA replication and repair protein RecF [Streptococcus porcinus str. Jelinkova 176] Length = 363 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 80/369 (21%), Positives = 162/369 (43%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + +RNY ++ F +F+G+N GKTN LEAI F++ R R + ++ Sbjct: 1 MWLKELTLINYRNYEQIQTKFVPGLNVFIGNNAQGKTNFLEAIYFIALTRSHRTRTDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + ++E G+ + I L + R +IN + + + ++++ Sbjct: 61 IHFLKDD-LKVYGKIERTSGVISLEITL----TKKGRITKINSLKQAKLSDYVGNMKVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L + + Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSQYNYVLKQRNTYLKTAVSINKDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+A+ G ++ R++ I AL + + +L L+ ++ ++ Sbjct: 176 DVLDEQLADYGTRVIHQRMQFIEALQQEAHRHHFAISDGLEQLKLSYQSSIAL-EAKESI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ + + L R+ D + T +GPHR D++ D S G+ + +++ + +A Sbjct: 235 RDRFMEALLHNRQKDMFKKNTSVGPHRDDIMFYINDMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L + Q F+T T SL K Sbjct: 293 VSLMKELTGENPILLLDDVMSELDNLRQTKLLETIIQEHVQTFITTTSLEHLSSLPPDIK 352 Query: 364 FMRISNHQA 372 +S Sbjct: 353 TFYVSQGTI 361 >gi|56418539|ref|YP_145857.1| recombination protein F [Geobacillus kaustophilus HTA426] gi|81675966|sp|Q5L3Y9|RECF_GEOKA RecName: Full=DNA replication and repair protein recF gi|56378381|dbj|BAD74289.1| DNA replication and repair protein [Geobacillus kaustophilus HTA426] Length = 372 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 159/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L ++ +RNY L F + +G+N GKTN++EAI L+ + R ++ D+ Sbjct: 1 MFLTNLTLTNYRNYEYETLNFGEGVNVILGENAQGKTNMMEAIYVLAMAKSHRTSNDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG S+ LE + + + N + + + + HL + Sbjct: 61 IRWNEE-----YAKIEGRAEKRSGSLTLELLISKKGKKARCNHIEQQRLSQYVGHLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + + P + + +++L++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQARERSDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+ L KI + R + ++ L M + + + + +D Sbjct: 176 AVLDVLTEQLVLLAAKITLRRRQFLSLLEQWAMPIHYEISRGAEQLCIRYEPSVDVSEKA 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E Y++ R+ + TL+GPHR D+ K + GS G+Q+ + Sbjct: 236 ELSRIVEAYSETFAAMREREVQRGTTLVGPHRDDIAFFVNGKNV-QTFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 295 VKLAELELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRKK-VQTFVTTTSIDGIKHD 353 Query: 358 LNETAKFMRISNHQA 372 + + A R+ + Sbjct: 354 IIQEAAIYRVHSGSV 368 >gi|322390514|ref|ZP_08064032.1| recombination protein F [Streptococcus parasanguinis ATCC 903] gi|321142788|gb|EFX38248.1| recombination protein F [Streptococcus parasanguinis ATCC 903] Length = 364 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L+I FRNY L + F IF+G N GKTNILE+I FL+ R R + D+ Sbjct: 1 MWLKHLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F +V G + LE R ++N + + H+ + Sbjct: 61 IYFESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 P ++ G RR+F+D + + P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +++Q+A G ++ R+E I L + E + + LS+ F + + Sbjct: 176 EVLDSQLASFGSRVIHHRLEFIKKLEAKAKEKHTRLSDNKEALSIQYQ-STVFSEEGNDI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E++ L R+ D + T IGPHR DL + GS G+ + V++ + LA Sbjct: 235 EEQFLSMLEKNRQKDIFRKTTSIGPHRDDLAFFINNMN--ATFGSQGQHRSVVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ T PILLLD++ + LD ++ L +++ Q F+T T L E K Sbjct: 293 IELMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTTTLDHLKDLLEELK 351 Query: 364 FMRISNHQA 372 + Sbjct: 352 IFTVQAGHI 360 >gi|261417504|ref|YP_003251186.1| recombination protein F [Geobacillus sp. Y412MC61] gi|297528380|ref|YP_003669655.1| DNA replication and repair protein RecF [Geobacillus sp. C56-T3] gi|319765162|ref|YP_004130663.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC52] gi|261373961|gb|ACX76704.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC61] gi|297251632|gb|ADI25078.1| DNA replication and repair protein RecF [Geobacillus sp. C56-T3] gi|317110028|gb|ADU92520.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC52] Length = 372 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 160/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L ++ +RNY L F + +G+N GKTN++EAI L+ + R ++ D+ Sbjct: 1 MFLTNLTLTNYRNYEYETLNFGEGVNVILGENAQGKTNMMEAIYVLAMAKSHRTSNDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG S+ LE + + + N + + + + HL + Sbjct: 61 IRWNEE-----YAKIEGRAEKRSGSLTLELLISKKGKKARCNHIEQQRLSQYVGHLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + + P + + +++L++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQARERSDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+ L KI + R + ++ L M + + + + +D Sbjct: 176 AVLDVLTEQLVLLAAKITLRRRQFLSLLEQWAMPIHYEISRGAEQLCIRYEPSVDVSEKA 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E Y++ R+ + + TL+GPHR D+ K + GS G+Q+ + Sbjct: 236 ELSRIVEAYSETFAAMREREVLRGTTLVGPHRDDIAFFVNGKNV-QTFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 295 VKLAELELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRKK-VQTFVTTTSIDGIKHD 353 Query: 358 LNETAKFMRISNHQA 372 + + A R+ + Sbjct: 354 IIQEAAIYRVHSGSV 368 >gi|73661313|ref|YP_300094.1| recombination protein F [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82581562|sp|Q4A177|RECF_STAS1 RecName: Full=DNA replication and repair protein recF gi|72493828|dbj|BAE17149.1| DNA repair and genetic recombination protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 371 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 98/377 (25%), Positives = 165/377 (43%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY S+ L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLKTLQLQNYRNYESISLNCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +A++EG + L + + ++IN + + + HL + Sbjct: 61 IRFDSD-----YAKIEGDLSYRYGEMPLTMYITKKGKQVKINHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + DS Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQYGQKTDS 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + + Q AE +KI + R IN L SL LSL K D Sbjct: 176 TMLEVLNQQFAEYALKITLRREHFINELESLAKPIHSGITNERETLSLNYLPSIKLENKD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +S EE L D + + L GPHR DL + +GS G+Q+ + Sbjct: 236 KSETERLEEVLTILNDNMEREKDRGVCLYGPHRDDLGFNVNGMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQSHLLSTIQHK-VQTFVTTTSVDGIEH 353 Query: 357 SLNETAKFMRISNHQAL 373 + + AK RI+ + + Sbjct: 354 EIMKNAKLYRINQGEII 370 >gi|50915219|ref|YP_061191.1| recombination protein F [Streptococcus pyogenes MGAS10394] gi|73914003|sp|Q5X9A5|RECF_STRP6 RecName: Full=DNA replication and repair protein recF gi|533080|gb|AAA85783.1| RecF protein [Streptococcus pyogenes] gi|50904293|gb|AAT88008.1| RecF [Streptococcus pyogenes MGAS10394] Length = 368 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + Sbjct: 176 AVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR DL S G+ + +++ + +A Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E + Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTV 361 >gi|290581413|ref|YP_003485805.1| putative RecF protein [Streptococcus mutans NN2025] gi|254998312|dbj|BAH88913.1| putative RecF protein [Streptococcus mutans NN2025] Length = 363 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 163/371 (43%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ +N+ +RNY ++ F +FVG N GKTN LEAI FLS R R S ++ Sbjct: 1 MWIEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G V G+ + I LE R +IN + + + + + Sbjct: 61 IQFGQKEL-----NVSGLLNRVNGKIPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L E D+ + Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQRNAYLKSEKKVDTDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G K+ R++ I L+ +Y + L ++ KFD + Sbjct: 176 FVLDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQEHLKISYLSSVKFDH-KKNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ + L R+ D + T +GPHR DL + GS G+ + +++ + LA Sbjct: 235 RDNFLNLLQKNRQGDIFKKNTSVGPHRDDLAFFIN--QMNANFGSQGQHRSLILSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI TG PILLLD++ + LD ++ L + D Q F+T T L + K Sbjct: 293 IELIKTVTGDYPILLLDDVMSELDNYRQIKLLEGIKD-NVQTFITTTSLEHLQQLPKKLK 351 Query: 364 FMRISNHQALC 374 I+ + L Sbjct: 352 LFTINQGKVLS 362 >gi|138893683|ref|YP_001124136.1| recombination protein F [Geobacillus thermodenitrificans NG80-2] gi|196249897|ref|ZP_03148593.1| DNA replication and repair protein RecF [Geobacillus sp. G11MC16] gi|166220711|sp|A4IJ87|RECF_GEOTN RecName: Full=DNA replication and repair protein recF gi|134265196|gb|ABO65391.1| RecF [Geobacillus thermodenitrificans NG80-2] gi|196210773|gb|EDY05536.1| DNA replication and repair protein RecF [Geobacillus sp. G11MC16] Length = 372 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 158/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L ++ +RNY L FD I +G+N GKTN++EAI L+ + R + D+ Sbjct: 1 MFLTNLTLTNYRNYEHETLSFDQGVNIILGENAQGKTNMMEAIYVLAMAKSHRTTNDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG S+ LE + + + N + + + + HL + Sbjct: 61 IRWNED-----YAKIEGRAEKRSGSLALELTISKKGKKARCNHIEQQRLSQYVGHLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + + P + + +++L++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFIDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQAREQHDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+ L KI + R + + L M + + + + +D Sbjct: 176 AVLDVLTEQLMVLAAKITLRRRQFLALLEQWAMPIHHEISRGAERLHIRYEPSVDVSEKA 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E Y++ R+ + TL+GPHR D+ K + GS G+Q+ + Sbjct: 236 ELSRIVEAYSETFAAMREREIQRGTTLVGPHRDDIAFIVNGKNV-QTFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI + G PILLLD++ + LD+ ++ L + Q F+T T Sbjct: 295 VKLAEIELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRKK-VQTFVTTTSIDGIKHD 353 Query: 358 LNETAKFMRISNHQA 372 L + A R+ + Sbjct: 354 LIQEAAIYRVHSGSV 368 >gi|322515803|ref|ZP_08068748.1| recombination protein F [Streptococcus vestibularis ATCC 49124] gi|322125765|gb|EFX97083.1| recombination protein F [Streptococcus vestibularis ATCC 49124] Length = 366 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 162/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I FRNY + F IF+G N GKTNILEAI FL+ R R S ++ Sbjct: 1 MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + ++ G+ + LE R ++N + + + H+ + Sbjct: 61 IQFQQNTL-----KLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+++ G ++ R+E I L + + +L ++ + + + + Sbjct: 176 SVLDEQLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENN-NGI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + L K D + T IGPHR DL D + GS G+Q+ +++ + +A Sbjct: 235 RESFLTTLKQNHKRDIFKKNTGIGPHRDDLTFYINDMN--ASFGSQGQQRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI TG PILLLD++ + LD ++ L + D Q FMT T +L K Sbjct: 293 IALIKKVTGEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPPDLK 351 Query: 364 FMRISNHQA 372 + N Sbjct: 352 NFLVKNGNI 360 >gi|294496879|ref|YP_003560579.1| DNA replication and repair protein RecF [Bacillus megaterium QM B1551] gi|295702246|ref|YP_003595321.1| DNA replication and repair protein RecF [Bacillus megaterium DSM 319] gi|294346816|gb|ADE67145.1| DNA replication and repair protein RecF [Bacillus megaterium QM B1551] gi|294799905|gb|ADF36971.1| DNA replication and repair protein RecF [Bacillus megaterium DSM 319] Length = 372 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 80/378 (21%), Positives = 162/378 (42%), Gaps = 14/378 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + ++ +RNY + F+ + + +G+N GKTN++E+I LS + R ++ ++ Sbjct: 1 MYIKEITLTNYRNYTKTTIPFENKVNVILGENAQGKTNVMESIFVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +A++ G+ + L+ + + N + + + + + Sbjct: 61 IKWDCE-----YAKLSGIVEKHRGPVTLDLVISTKGKKAKYNHIEQKKLSQYIGSINTVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + + ++++++ RN+ L + D Sbjct: 116 FAPEDLNLVKGSPQVRRKFIDMEIGQVSPVYMHDLSRYQKILQQRNQYLKQLQTKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 S + Q++E+ KI R E + L + + +K+ +D D Sbjct: 176 SLLDVLTLQLSEMAAKILKKRFEFLQLLQQWAEPIHKGISRDLETLKIEYKNSIDVSEDA 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E Y +K + + TL GPHR DL+ +K + GS G+Q+ + Sbjct: 236 DLSKMLEAYHQKFDKIKSREIDRGVTLAGPHRDDLLFYVNEKDV-QTFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T + + Sbjct: 295 LKLAEIELIHQEVGEYPILLLDDVLSELDDFRQSHLLNTIQGK-VQTFVTTTSIEGIHHE 353 Query: 358 LNETAKFMRISNHQALCI 375 E A + Q + Sbjct: 354 TLEKAATYHVEAGQIQKV 371 >gi|228478114|ref|ZP_04062725.1| DNA replication and repair protein RecF [Streptococcus salivarius SK126] gi|228250294|gb|EEK09547.1| DNA replication and repair protein RecF [Streptococcus salivarius SK126] Length = 366 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I FRNY + F IF+G N GKTNILEAI FL+ R R S ++ Sbjct: 1 MWLEKIDIQHFRNYTETSVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + ++ G+ + LE R ++N + + + H+ + Sbjct: 61 IQFQQNTL-----KLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+++ G ++ R+E I L + + +L ++ + + + + Sbjct: 176 SVLDEQLSDFGARVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENN-KVI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + L K D + T +GPHR DL D + GS G+Q+ +++ + +A Sbjct: 235 RESFLTTLKQNHKRDIFKKNTGVGPHRDDLTFYINDMN--ASFGSQGQQRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI TG PILLLD++ + LD ++ L + D Q FMT T +L K Sbjct: 293 IALIKKVTGEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPSDLK 351 Query: 364 FMRISNHQA 372 ++N Sbjct: 352 TFLVNNGNI 360 >gi|139474624|ref|YP_001129340.1| recombination protein F [Streptococcus pyogenes str. Manfredo] gi|166221873|sp|A2RH21|RECF_STRPG RecName: Full=DNA replication and repair protein recF gi|134272871|emb|CAM31153.1| DNA replication and repair protein RecF [Streptococcus pyogenes str. Manfredo] Length = 368 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 162/369 (43%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + Sbjct: 176 AVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR DL S G+ + +++ + +A Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIH 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTV 361 >gi|322392439|ref|ZP_08065899.1| recombination protein F [Streptococcus peroris ATCC 700780] gi|321144431|gb|EFX39832.1| recombination protein F [Streptococcus peroris ATCC 700780] Length = 363 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 90/370 (24%), Positives = 167/370 (45%), Gaps = 10/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L+I +FRNY + F+ + +FVG N GKTN+LE+I FL+ R R + ++ Sbjct: 1 MWLKNLSIKQFRNYRDTEIEFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +V G+ +I LE + R ++N + + + H+ + Sbjct: 61 IQFEEEKL-----QVSGILQKKTATIPLEIDLTQKGRITKVNHLKQARLSDYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGAPAIRRKFIDMELGQIKPIYLSDLSSYNHILKQRNTYLKSSQNIDDTFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ E G ++ I R + I + + + +LS+ F L Sbjct: 176 SVLDDQLVEYGCRVMIHRADFIQKMELFGKKKHFDISDQLEELSICYQPSVNF-IDKEHL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + L R D + T +GPHR D+I I + GS G+ + +++ I LA Sbjct: 235 ADSFHTALQKSRSRDLFKKNTGVGPHRDDMIFLING--IDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L +T Sbjct: 293 IELMESITKESPILLLDDVMSELDNTRQLKLLETISH-NIQTFITTTSLDHLQNLPDTLS 351 Query: 364 FMRISNHQAL 373 ++N Q + Sbjct: 352 VFTVNNGQIV 361 >gi|24380484|ref|NP_722439.1| recombination protein F [Streptococcus mutans UA159] gi|51316462|sp|Q8DRR3|RECF_STRMU RecName: Full=DNA replication and repair protein recF gi|24378515|gb|AAN59745.1|AE015036_4 putative RecF protein, ATPase involved in DNA repair [Streptococcus mutans UA159] Length = 363 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 163/371 (43%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ +N+ +RNY ++ F +FVG N GKTN LEAI FLS R R S ++ Sbjct: 1 MWIEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G V G+ + I LE R +IN + + + + + Sbjct: 61 IQFGQKEL-----NVSGLLNRVNGKIPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L E D+ + Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQRNAYLKSEKKVDTDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+ + G K+ R++ I L+ +Y + L ++ KFD + Sbjct: 176 FVLDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQEHLKISYLSSVKFDH-KKNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ + L R+ D + T +GPHR DL + + GS G+ + +++ + LA Sbjct: 235 RDNFLNLLQKNRQGDIFKKNTSVGPHRDDLAFFIN--QMNASFGSQGQHRSLILSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L TG PILLLD++ + LD ++ L + D Q F+T T L + K Sbjct: 293 IELTKTVTGDYPILLLDDVMSELDNYRQIKLLEGIKD-NVQTFITTTSLEHLQQLPKKLK 351 Query: 364 FMRISNHQALC 374 I+ + L Sbjct: 352 LFTINQGKVLS 362 >gi|323128305|gb|ADX25602.1| recombination protein F [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 368 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRVSGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + Sbjct: 176 AVLDEQLASYGTRVMEHRIDFINALEKEANTHHQAISNGLENLSLSYQSSVVFDK-RTNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR DL S G+ + +++ + +A Sbjct: 235 YQQFLHQLKKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E + Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTI 361 >gi|239637289|ref|ZP_04678276.1| DNA replication and repair protein RecF [Staphylococcus warneri L37603] gi|239597126|gb|EEQ79636.1| DNA replication and repair protein RecF [Staphylococcus warneri L37603] Length = 371 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 91/377 (24%), Positives = 163/377 (43%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + + + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTIDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFDSE-----YAKIEGELNYRHGTMPLTMFITKRGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G + RRRF+D + I + + ++ +++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPLIRRRFIDMELGQISAVYLNDLSQYQHILKQKNNYLKQLQIGNNTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + + Q AE +K+ + R I L L L+L KF D Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELEQLAQPIHAGITNEREALALKYLPSLKFSHQD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 QS + EE L D + + L GPHR DL + +GS G+Q+ + Sbjct: 236 QSESEMLEEILTLLNDNLQREKDRGVCLFGPHRDDLGFNVNGMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 EIMNNAKLYRINQGEII 370 >gi|307705894|ref|ZP_07642732.1| DNA replication and repair protein recF [Streptococcus mitis SK597] gi|307620555|gb|EFN99653.1| DNA replication and repair protein recF [Streptococcus mitis SK597] Length = 365 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 164/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEDQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQTIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L + + + + +LS++ K L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLEAFGRKKHFELSNQIEELSISYQSSVKI-TDKEDL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T IGPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGIGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L + Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SVQTFITTTSLDHLQNLPKNLS 351 Query: 364 FMRISNHQA 372 I + Sbjct: 352 IFTIQGGKV 360 >gi|52078495|ref|YP_077286.1| recombination protein F [Bacillus licheniformis ATCC 14580] gi|52783859|ref|YP_089688.1| recombination protein F [Bacillus licheniformis ATCC 14580] gi|81691262|sp|Q65PL9|RECF_BACLD RecName: Full=DNA replication and repair protein recF gi|52001706|gb|AAU21648.1| DNA repair RecF [Bacillus licheniformis ATCC 14580] gi|52346361|gb|AAU38995.1| RecF [Bacillus licheniformis ATCC 14580] Length = 370 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 160/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L +S +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + S+ ++ + + ++N + + + + + Sbjct: 61 IRWDED-----YAKIEGRVIKKNGSVPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFLD + + P + + +++++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238 + + Q+ E K+ + R++ ++ L + +L+L L Sbjct: 176 TMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSP 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + Y + R + +L GPHR D++ + + +GS G+Q+ + Sbjct: 236 DLSKMINSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 LKLAEIDLIQEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHK 353 Query: 358 LNETAKFMRISNH 370 A+ R+ N Sbjct: 354 TLNEAEIFRVENG 366 >gi|293364503|ref|ZP_06611228.1| recombination protein F [Streptococcus oralis ATCC 35037] gi|307702791|ref|ZP_07639741.1| DNA replication and repair protein recF [Streptococcus oralis ATCC 35037] gi|291317011|gb|EFE57439.1| recombination protein F [Streptococcus oralis ATCC 35037] gi|307623647|gb|EFO02634.1| DNA replication and repair protein recF [Streptococcus oralis ATCC 35037] Length = 363 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 162/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G+ SI LE R ++N + + + H+ + Sbjct: 61 IHFDNEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ E G ++ R++ I L + + + +LS++ F L Sbjct: 176 SVLDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNFTDD-EQL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 TNSFKIALEKSRSRDLFKKNTGVGPHRDDIAFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I N + Sbjct: 352 IFNIQNGKI 360 >gi|311070651|ref|YP_003975574.1| recombination protein F [Bacillus atrophaeus 1942] gi|310871168|gb|ADP34643.1| recombination protein F [Bacillus atrophaeus 1942] Length = 370 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 83/373 (22%), Positives = 160/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L ++ +RNY + L F+ + + +G+N GKTN++EAI LS + R ++ ++ Sbjct: 1 MYIQNLELTSYRNYERVELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + SI ++ + + ++N + + + L Sbjct: 61 IRWDKD-----YAKIEGRVMKQNGSIPMQLVISKKGKKGKVNHIEQQKLSRYVGALNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFLD + + P + + +++++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILTQRNHFLKQLQSRKQTDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238 + + Q+ E K+ + R++ L + +L+L L+ + Sbjct: 176 TMLDVLTEQLIETAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYQTALEVSDPE 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + Y + R+ + TL GPHR D++ + + +GS G+Q+ + Sbjct: 236 DLSKIGDSYQRAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNH 370 A R+ N Sbjct: 354 TLHQAGMFRVQNG 366 >gi|22538290|ref|NP_689141.1| recombination protein F [Streptococcus agalactiae 2603V/R] gi|25012150|ref|NP_736545.1| recombination protein F [Streptococcus agalactiae NEM316] gi|77413654|ref|ZP_00789839.1| DNA replication and repair protein RecF [Streptococcus agalactiae 515] gi|51316463|sp|Q8DWQ8|RECF_STRA5 RecName: Full=DNA replication and repair protein recF gi|51316464|sp|Q8E2K7|RECF_STRA3 RecName: Full=DNA replication and repair protein recF gi|22535205|gb|AAN01014.1|AE014289_14 recF protein [Streptococcus agalactiae 2603V/R] gi|24413694|emb|CAD47774.1| Unknown [Streptococcus agalactiae NEM316] gi|77160309|gb|EAO71435.1| DNA replication and repair protein RecF [Streptococcus agalactiae 515] Length = 369 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ +RNY ++ F IF+G N GKTN LEAI FL+ R R S ++ Sbjct: 1 MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ++ G + L+ + R ++N + + + + + Sbjct: 61 VHFKHHD-----VQITGEVIRKSGHLNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+FLD + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A+ G ++ R + I AL+ ++ + LS+ +F ++ Sbjct: 176 TVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEF-TDKSSI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + +L D + T IGPHR D+ D I S G+Q+ +++ + LA Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFASQGQQRSLILSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI T PILLLD++ + LD ++ L + + Q F+T T +L + K Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351 Query: 364 FMRISNHQA 372 +S+ Sbjct: 352 IFNVSDGTI 360 >gi|319651102|ref|ZP_08005236.1| DNA replication and repair protein recF [Bacillus sp. 2_A_57_CT2] gi|317397272|gb|EFV77976.1| DNA replication and repair protein recF [Bacillus sp. 2_A_57_CT2] Length = 372 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 82/379 (21%), Positives = 164/379 (43%), Gaps = 16/379 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + +RNY L + F+ + + +G+N GKTN++E+I L+ + R ++ D+ Sbjct: 1 MHIEQLLLKNYRNYEELEVNFENKVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG S+ ++ + + + N + + + + ++ + Sbjct: 61 IRWDQE-----YAKIEGRVQKRQGSLPMQLFISKKGKKAKCNHIEQQKLSQYVGNMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + + P + + ++++++ RN L + D Sbjct: 116 FAPEDLHLVKGSPQIRRRFIDMEIGQVSPVYLHDISQYQKILQQRNHYLKMLQIKKQTDH 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q E+ KI R E + L + + + +K+ + +Q Sbjct: 176 TMLEILTEQFIEMAAKIVSKRYEFLRLLENWAQPIHEGISRGLETLKIEYKPSAEVSEEQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + Y K + + T+ GPHR DLI + + GS G+Q+ + Sbjct: 236 DLSKMVKVYQNKFAKVKNREIDRGVTMFGPHRDDLIFHVNGRDV-QTFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-- 356 + LA LI + G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 VKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIDHQ 353 Query: 357 SLNETAKFMRISNHQALCI 375 +L E A + + I Sbjct: 354 TLKEAAA-FSVEAGRIKKI 371 >gi|70725005|ref|YP_251919.1| recombination protein F [Staphylococcus haemolyticus JCSC1435] gi|82581561|sp|Q4LAL2|RECF_STAHJ RecName: Full=DNA replication and repair protein recF gi|68445729|dbj|BAE03313.1| DNA repair and genetic recombination protein [Staphylococcus haemolyticus JCSC1435] Length = 371 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 93/377 (24%), Positives = 162/377 (42%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLKTLQLENYRNYEEVTLECHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +A++EG+ ++ L + + +++N + + + HL + Sbjct: 61 IRFNSE-----YAKIEGVLNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKQDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q A+ + + + R I L SL LSLT K Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIKELESLAKPIHAGITNERETLSLTYLPSIKLSDMS 235 Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L +E L D K + L GPHR DL + D +GS G+Q+ + Sbjct: 236 KGEQTLWDEVITLLNDNIKREMDRGVCLFGPHRDDLGFNVNDMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 EIMNNAKLYRINQGEII 370 >gi|307710347|ref|ZP_07646788.1| DNA replication and repair protein recF [Streptococcus mitis SK564] gi|307618939|gb|EFN98074.1| DNA replication and repair protein recF [Streptococcus mitis SK564] Length = 363 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 164/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ G ++ R++ I L S + + + +LS++ K L Sbjct: 176 SVLDDQLVNYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVKL-TDKEDL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + + Sbjct: 352 IFTIQDGKV 360 >gi|89101116|ref|ZP_01173952.1| recombination protein F [Bacillus sp. NRRL B-14911] gi|89084171|gb|EAR63336.1| recombination protein F [Bacillus sp. NRRL B-14911] Length = 372 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 158/374 (42%), Gaps = 16/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + +RNY SL + F+ + + +G N GKTN++E+I L+ + R ++ ++ Sbjct: 1 MFIEQLLLRNYRNYESLEVQFEDKVNVIIGQNAQGKTNVMESIYVLAMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + ++ + + + N + + + + ++ + Sbjct: 61 IRWDED-----YAKIEGRVRKNHGPLPMQLVISKKGKKAKCNHIEQQRLSQYVGNMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + + P + + + ++++ RN L D Sbjct: 116 FAPEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDVGQYNKILQQRNHYLKLLQTRKQTDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q E+ +I R E + L M + + +K+ D Q Sbjct: 176 AMLEILTEQFIEMAARIVAKRFEFLKLLQKWAMPIHEGISRGLETLKIEYKPSADVSDGQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + Y +K R + T+ GPHR DL + + GS G+Q+ + Sbjct: 236 ELSKMIKVYQEKFEKVRGREIDRGVTMFGPHRDDLAFYVNGRDV-QTFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-- 356 + LA LI + G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 LKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIDHQ 353 Query: 357 SLNETAKFMRISNH 370 +L E A + Sbjct: 354 TLKEAAA-FEVEAG 366 >gi|71904550|ref|YP_281353.1| recombination protein F [Streptococcus pyogenes MGAS6180] gi|94993383|ref|YP_601482.1| recombination protein F [Streptococcus pyogenes MGAS2096] gi|97180999|sp|Q48QL2|RECF_STRPM RecName: Full=DNA replication and repair protein recF gi|166221869|sp|Q1J973|RECF_STRPB RecName: Full=DNA replication and repair protein recF gi|71803645|gb|AAX72998.1| DNA replication and repair protein recF [Streptococcus pyogenes MGAS6180] gi|94546891|gb|ABF36938.1| DNA replication and repair protein recF [Streptococcus pyogenes MGAS2096] Length = 368 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + Sbjct: 176 AVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR +L S G+ + +++ + +A Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDNLAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E + Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTV 361 >gi|223932878|ref|ZP_03624874.1| DNA replication and repair protein RecF [Streptococcus suis 89/1591] gi|330833788|ref|YP_004402613.1| DNA replication and repair protein RecF [Streptococcus suis ST3] gi|223898459|gb|EEF64824.1| DNA replication and repair protein RecF [Streptococcus suis 89/1591] gi|329308011|gb|AEB82427.1| DNA replication and repair protein RecF [Streptococcus suis ST3] Length = 364 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 163/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY L + F +F+G+N GKTNILE+I L+ R R + D+ Sbjct: 1 MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G+ + L+ R ++N + + H+ + Sbjct: 61 LQFQEKEL-----SISGLLHRTSGKVPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQRNTYLKSTDKIDENFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+AE G ++ R++ + L VQ+ + +L++ K L Sbjct: 176 SVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVN-L 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L RK D + T +GPHR D+ +GS G+ + +++ + LA Sbjct: 235 IDKFLTELERCRKRDLFKKNTGVGPHRDDVAFFINGMN--AHYGSQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ T PILLLD++ + LD +++ L +TD Q F+T T L ++ K Sbjct: 293 IELMKEVTREYPILLLDDVMSELDNNRQIKLLETITDT-IQTFITTTSLDHLHKLPDSLK 351 Query: 364 FMRISNHQA 372 I + + Sbjct: 352 IFHIESGKV 360 >gi|15675937|ref|NP_270111.1| recombination protein F [Streptococcus pyogenes M1 GAS] gi|71911668|ref|YP_283218.1| recombination protein F [Streptococcus pyogenes MGAS5005] gi|81171138|sp|P0C0D1|RECF_STRP1 RecName: Full=DNA replication and repair protein recF gi|13623177|gb|AAK34832.1| RecF protein [Streptococcus pyogenes M1 GAS] gi|71854450|gb|AAZ52473.1| DNA replication and repair protein [Streptococcus pyogenes MGAS5005] Length = 368 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR +L S G+ + +++ + +A Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDELAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E + Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTV 361 >gi|322412900|gb|EFY03808.1| recombination protein F [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 368 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 161/369 (43%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKHYRNYDHLLTSFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R+ IN L + Q + LSL+ FD+ + Sbjct: 176 AVLDEQLASYGTRVMEHRINFINTLEKEANTHHQAISNGLENLSLSYQSSVVFDK-KTNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR DL S G+ + +++ + +A Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E + Sbjct: 293 VSLMKVLTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTV 361 >gi|157149944|ref|YP_001449331.1| recombination protein F [Streptococcus gordonii str. Challis substr. CH1] gi|189039648|sp|A8AU71|RECF_STRGC RecName: Full=DNA replication and repair protein recF gi|157074738|gb|ABV09421.1| DNA replication and repair protein RecF [Streptococcus gordonii str. Challis substr. CH1] Length = 361 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 162/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRNY + F + IF+G N GKTNILE+I FL+ R R S D Sbjct: 1 MWLKSLTLKHFRNYQDAEINFHSGLNIFLGQNAQGKTNILESIYFLALTRSHRTRSDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +V G+ +I L+ R +IN + + + + + Sbjct: 61 IHFQEKDL-----KVSGILEKKTGTIPLDIELTAKGRITKINHLKQNRLSDYIGAMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPIYLADLSNYNHVLKQRNSYLKNSQNIDENFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ E G ++ R++ + L E + L++ Q ++ Sbjct: 176 SVLDEQLIEYGCRVVKHRLDFLKKLEIFAQEKHLDISQKKETLTIDYLSSVPL-QDIDSI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + L RK D + T +GPHR D+ + +GS G+ + V++ + LA Sbjct: 235 EESFRLSLSKNRKRDLFKQNTGVGPHRDDIAFFIN--QMDANYGSQGQHRSVVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI N T +PILLLD++ + LD D++ L ++ Q F+T T +L + K Sbjct: 293 IKLIENITKESPILLLDDVMSELDNDRQLKLLETISQ-EIQTFITTTTLEHLKNLPKDIK 351 Query: 364 FMRISNHQA 372 ISN Sbjct: 352 IFEISNGNI 360 >gi|146319836|ref|YP_001199548.1| recombination protein F [Streptococcus suis 05ZYH33] gi|146322027|ref|YP_001201738.1| recombination protein F [Streptococcus suis 98HAH33] gi|253752812|ref|YP_003025953.1| DNA replication and repair protein RecF [Streptococcus suis SC84] gi|253754637|ref|YP_003027778.1| DNA replication and repair protein RecF [Streptococcus suis P1/7] gi|253756570|ref|YP_003029710.1| DNA replication and repair protein RecF [Streptococcus suis BM407] gi|166221874|sp|A4W4P9|RECF_STRS2 RecName: Full=DNA replication and repair protein recF gi|166221876|sp|A4VYF9|RECF_STRSY RecName: Full=DNA replication and repair protein recF gi|145690642|gb|ABP91148.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus suis 05ZYH33] gi|145692833|gb|ABP93338.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus suis 98HAH33] gi|251817101|emb|CAZ52753.1| DNA replication and repair protein RecF [Streptococcus suis SC84] gi|251819034|emb|CAZ56881.1| DNA replication and repair protein RecF [Streptococcus suis BM407] gi|251820883|emb|CAR47649.1| DNA replication and repair protein RecF [Streptococcus suis P1/7] gi|292559432|gb|ADE32433.1| RecF protein [Streptococcus suis GZ1] gi|319759228|gb|ADV71170.1| recombination protein F [Streptococcus suis JS14] Length = 364 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 162/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY L + F +F+G+N GKTNILE+I L+ R R + D+ Sbjct: 1 MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G+ + L+ R ++N + + H+ + Sbjct: 61 LQFQEKEL-----SISGLLHRTSGKVPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQRNTYLKSTDKIDENFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+AE G ++ R++ + L VQ+ + +L++ + L Sbjct: 176 SVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVN-L 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L RK D + T +GPHR D+ + S G+ + +++ + LA Sbjct: 235 IDKFLTELEKSRKRDLFKKNTGVGPHRDDVAFFINGMN--AHYASQGQHRSLVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ T PILLLD++ + LD +++ L +TD Q F+T T L ++ K Sbjct: 293 IELMKEVTREYPILLLDDVMSELDNNRQIKLLETITDT-IQTFITTTSLDHLHKLPDSLK 351 Query: 364 FMRISNHQA 372 I + + Sbjct: 352 IFHIESGKV 360 >gi|330685260|gb|EGG96921.1| DNA replication and repair protein RecF [Staphylococcus epidermidis VCU121] Length = 371 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 90/377 (23%), Positives = 164/377 (43%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + + + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTIDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFDSE-----YAKIEGDLNYRHGTMPLTMFITKRGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G + RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPLIRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQIGNKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + + Q AE +K+ + R I L L +L+L K D Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELEQLAQPIHAGITNEREQLALKYLPSLKLSHQD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 Q+ + EE L D + + L GPHR DL + +GS G+Q+ + Sbjct: 236 QTESEMLEEILTLLNDNLQREKDRGVCLFGPHRDDLGFNVNGMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 EIMNNAKLYRINQGEII 370 >gi|307707884|ref|ZP_07644361.1| DNA replication and repair protein RecF [Streptococcus mitis NCTC 12261] gi|307616144|gb|EFN95340.1| DNA replication and repair protein RecF [Streptococcus mitis NCTC 12261] Length = 365 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 164/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNIFLGRNAQGKTNILEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L + + + +LS++ K L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLEHFGRKKHFELSNQIEELSISYQSSVK-STEKEDL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + + Sbjct: 352 IFTIQDGKV 360 >gi|251794040|ref|YP_003008771.1| DNA replication and repair protein RecF [Paenibacillus sp. JDR-2] gi|247541666|gb|ACS98684.1| DNA replication and repair protein RecF [Paenibacillus sp. JDR-2] Length = 369 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 93/374 (24%), Positives = 158/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + +RNY L LV D + +FVG N GKTN+LEAI L+ + R + ++ Sbjct: 1 MFLKSIQLQNYRNYKELELVTDNKVNLFVGPNAQGKTNLLEAIFALALTKSHRTSKDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S AR+ G ++KL+ + +IN + R + + L + Sbjct: 61 IGWEADS-----ARIHGEVEKRYGTLKLDLMYSSQGKKAKINGLEQRKLSDFIGSLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P I G RRRFLD + + P + + + +++ RN L G + Sbjct: 116 FAPEDLEIVKGTPGIRRRFLDMEIGQVQPGYLHTLTQYTKVLAQRNNYLKTATPGGSQQA 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL--DGKFDQS 239 Q+AE GVKI R I+ L +L++ DG + Sbjct: 176 MLEIWNMQLAEHGVKIMKKRKHFIHKLQRWAEHIHSGITAGGERLTIEYRPSFDGGASED 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L E++ KL + + +L+GPHR D+ K + +GS G+Q+ + + Sbjct: 236 ETVLFEQFMLKLSQVKDQEIRRGMSLVGPHRDDMAFFINGKEAAV-YGSQGQQRTTALSL 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI G P+LLLD++ + LD++++ L Q F+T T + S Sbjct: 295 KLAEIELICEEIGEYPLLLLDDVLSELDQNRQTQLIETFQSK-VQTFITTTGLESVNVSK 353 Query: 359 NETAKFMRISNHQA 372 + A + + Sbjct: 354 LQGAGIYDVREGRV 367 >gi|253730403|ref|ZP_04864568.1| recombination protein F [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725883|gb|EES94612.1| recombination protein F [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 370 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G P+LLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPVLLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 IMNNAKLYRINQGEII 369 >gi|94989496|ref|YP_597597.1| recombination protein F [Streptococcus pyogenes MGAS9429] gi|166221870|sp|Q1JJC0|RECF_STRPC RecName: Full=DNA replication and repair protein recF gi|94543004|gb|ABF33053.1| DNA replication and repair protein [Streptococcus pyogenes MGAS9429] Length = 368 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR +L S G+ + +++ + +A Sbjct: 235 YQQFLYQLEKNHQKDFFRKNTSVGPHRDELAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E + Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTV 361 >gi|168484319|ref|ZP_02709271.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC1873-00] gi|172042411|gb|EDT50457.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC1873-00] gi|332198850|gb|EGJ12932.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA47368] Length = 365 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSVQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L S + + + +LS++ L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I N +A Sbjct: 352 IFTIQNGKA 360 >gi|242243252|ref|ZP_04797697.1| recombination protein F [Staphylococcus epidermidis W23144] gi|242233201|gb|EES35513.1| recombination protein F [Staphylococcus epidermidis W23144] Length = 371 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 163/377 (43%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNSD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---FD 237 + + Q AE +K+ + R I L +L L+L K ++ Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNHRETLTLDYVPSLKLSNYE 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + L EE L D + + L GPHR DL + +GS G+Q+ + Sbjct: 236 ANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFNVNGMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVEGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RIS + L Sbjct: 354 EIMNNAKLYRISQGEIL 370 >gi|212637853|ref|YP_002314373.1| recombination protein F [Anoxybacillus flavithermus WK1] gi|212559333|gb|ACJ32388.1| Recombinational DNA repair ATPase RecF [Anoxybacillus flavithermus WK1] Length = 379 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 14/372 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +RNY F + + +G+N GKTNI+E+I LS + R + D+ R Sbjct: 11 LEQLTLKNYRNYEQGCWQFQNKVNVILGENAQGKTNIMESIYVLSMAKSHRTTNDKDLIR 70 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 +A++EG G + SI L+ + + ++N + + H+ + Sbjct: 71 WDED-----YAKIEGKVGKKNGSIFLQLTVSKKGKKAKLNHIEQAKLSRYVGHMNVVMFA 125 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSW 182 P + G RRRF+D + + P + + ++++++ RN+ L + D ++ Sbjct: 126 PEDLNLVKGSPQIRRRFIDMEIGQVSPVYMHELGQYQKVLQQRNQYLKLLQSKKQTDETF 185 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQSF 240 + Q+ EL KI + R E I L + + + + +L++ + Q + Sbjct: 186 LDVLTEQLVELAAKITLKRYEFIELLQTWAKPIHAEISRGNEQLAIHYCPSVHVLDKQQW 245 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + E Y K + + TLIGPHR DL K + GS G+Q+ + + Sbjct: 246 SRIVEVYNDKFARIKTKEIERGTTLIGPHRDDLSFTINGKDV-QTFGSQGQQRTTALSLK 304 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LN 359 LA LI + G PILLLD++ + LD+ ++ L + Q F+T T + + Sbjct: 305 LAEIDLIFSEIGEYPILLLDDVLSELDDFRQTHLLNAIQGK-VQTFVTTTSIDGIEHRVI 363 Query: 360 ETAKFMRISNHQ 371 A + + Q Sbjct: 364 RDADVYEVVSGQ 375 >gi|312864128|ref|ZP_07724363.1| DNA replication and repair protein RecF [Streptococcus vestibularis F0396] gi|311100360|gb|EFQ58568.1| DNA replication and repair protein RecF [Streptococcus vestibularis F0396] Length = 366 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 162/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I FRNY + F IF+G N GKTNILEAI FL+ R R S ++ Sbjct: 1 MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + ++ G+ + LE R ++N + + + H+ + Sbjct: 61 IQFQQNTL-----KLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D ++ Sbjct: 116 FAPENLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+++ G ++ R+E I L + + +L ++ + + + + Sbjct: 176 SVLDEQLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENN-NVI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + L K D + T +GPHR DL D + GS G+Q+ +++ + +A Sbjct: 235 RESFLTTLKQNHKRDIFKKNTGVGPHRDDLTFYINDMN--ASFGSQGQQRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI TG PILLLD++ + LD ++ L + + Q FMT T +L K Sbjct: 293 IALIKKVTGEFPILLLDDVMSELDNHRQLKLLESIGE-EVQTFMTTTSLDHLSNLPPDLK 351 Query: 364 FMRISNHQA 372 + N Sbjct: 352 TFLVKNGNI 360 >gi|15922994|ref|NP_370528.1| recombination protein F [Staphylococcus aureus subsp. aureus Mu50] gi|15925709|ref|NP_373242.1| recombination protein F [Staphylococcus aureus subsp. aureus N315] gi|21281733|ref|NP_644819.1| recombination protein F [Staphylococcus aureus subsp. aureus MW2] gi|49482257|ref|YP_039481.1| recombination protein F [Staphylococcus aureus subsp. aureus MRSA252] gi|49484916|ref|YP_042137.1| recombination protein F [Staphylococcus aureus subsp. aureus MSSA476] gi|57651112|ref|YP_184915.1| recombination protein F [Staphylococcus aureus subsp. aureus COL] gi|88193827|ref|YP_498612.1| recombination protein F [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266451|ref|YP_001245394.1| recombination protein F [Staphylococcus aureus subsp. aureus JH9] gi|150392484|ref|YP_001315159.1| recombination protein F [Staphylococcus aureus subsp. aureus JH1] gi|151220215|ref|YP_001331038.1| recombination protein F [Staphylococcus aureus subsp. aureus str. Newman] gi|156978335|ref|YP_001440594.1| recombination protein F [Staphylococcus aureus subsp. aureus Mu3] gi|161508270|ref|YP_001573929.1| recombination protein F [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141519|ref|ZP_03566012.1| recombination protein F [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316842|ref|ZP_04840055.1| recombination protein F [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733835|ref|ZP_04868000.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH130] gi|254663938|ref|ZP_05143410.1| recombination protein F [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424200|ref|ZP_05600629.1| recombination protein F [Staphylococcus aureus subsp. aureus 55/2053] gi|257426877|ref|ZP_05603279.1| recombination protein F [Staphylococcus aureus subsp. aureus 65-1322] gi|257429513|ref|ZP_05605900.1| recombination protein F [Staphylococcus aureus subsp. aureus 68-397] gi|257432160|ref|ZP_05608523.1| recombination protein F [Staphylococcus aureus subsp. aureus E1410] gi|257435121|ref|ZP_05611172.1| recombination protein F [Staphylococcus aureus subsp. aureus M876] gi|257793542|ref|ZP_05642521.1| recombination protein RecF [Staphylococcus aureus A9781] gi|258411152|ref|ZP_05681431.1| recombination protein RecF [Staphylococcus aureus A9763] gi|258420944|ref|ZP_05683878.1| recombination protein F [Staphylococcus aureus A9719] gi|258438583|ref|ZP_05689806.1| recombination protein F [Staphylococcus aureus A9299] gi|258443961|ref|ZP_05692299.1| recombination protein F [Staphylococcus aureus A8115] gi|258446223|ref|ZP_05694383.1| recombination protein F [Staphylococcus aureus A6300] gi|258449118|ref|ZP_05697224.1| recombination protein RecF [Staphylococcus aureus A6224] gi|258451363|ref|ZP_05699394.1| recombination protein F [Staphylococcus aureus A5948] gi|258454404|ref|ZP_05702372.1| recombination protein F [Staphylococcus aureus A5937] gi|262049436|ref|ZP_06022308.1| DNA replication and repair protein [Staphylococcus aureus D30] gi|262051892|ref|ZP_06024107.1| DNA replication and repair protein [Staphylococcus aureus 930918-3] gi|269201694|ref|YP_003280963.1| recombination protein F [Staphylococcus aureus subsp. aureus ED98] gi|282894283|ref|ZP_06302513.1| DNA replication and repair protein recF [Staphylococcus aureus A8117] gi|282907051|ref|ZP_06314899.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus Btn1260] gi|282910030|ref|ZP_06317838.1| recombination protein RecF [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912278|ref|ZP_06320074.1| recombination protein RecF [Staphylococcus aureus subsp. aureus WBG10049] gi|282912918|ref|ZP_06320710.1| RecF protein [Staphylococcus aureus subsp. aureus M899] gi|282920723|ref|ZP_06328442.1| DNA replication and repair protein recF [Staphylococcus aureus A9765] gi|282922546|ref|ZP_06330236.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus C101] gi|282927754|ref|ZP_06335368.1| DNA replication and repair protein recF [Staphylococcus aureus A10102] gi|283959488|ref|ZP_06376929.1| RecF protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284023041|ref|ZP_06377439.1| recombination protein F [Staphylococcus aureus subsp. aureus 132] gi|293497971|ref|ZP_06665825.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus 58-424] gi|293511561|ref|ZP_06670255.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus M809] gi|293550170|ref|ZP_06672842.1| RecF protein [Staphylococcus aureus subsp. aureus M1015] gi|294849832|ref|ZP_06790572.1| DNA replication and repair protein recF [Staphylococcus aureus A9754] gi|295406868|ref|ZP_06816672.1| DNA replication and repair protein recF [Staphylococcus aureus A8819] gi|295429301|ref|ZP_06821923.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275683|ref|ZP_06858190.1| recombination protein F [Staphylococcus aureus subsp. aureus MR1] gi|297209448|ref|ZP_06925846.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245903|ref|ZP_06929765.1| DNA replication and repair protein recF [Staphylococcus aureus A8796] gi|297589197|ref|ZP_06947838.1| recombination protein F [Staphylococcus aureus subsp. aureus MN8] gi|300911472|ref|ZP_07128921.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH70] gi|304379952|ref|ZP_07362681.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56749543|sp|Q6GD86|RECF_STAAS RecName: Full=DNA replication and repair protein recF gi|56749590|sp|Q6GKU1|RECF_STAAR RecName: Full=DNA replication and repair protein recF gi|56753681|sp|P68861|RECF_STAAM RecName: Full=DNA replication and repair protein recF gi|56753682|sp|P68862|RECF_STAAN RecName: Full=DNA replication and repair protein recF gi|56753685|sp|P68863|RECF_STAAU RecName: Full=DNA replication and repair protein recF gi|56753686|sp|P68864|RECF_STAAW RecName: Full=DNA replication and repair protein recF gi|81695634|sp|Q5HJZ2|RECF_STAAC RecName: Full=DNA replication and repair protein recF gi|122540544|sp|Q2G275|RECF_STAA8 RecName: Full=DNA replication and repair protein recF gi|166221868|sp|A7WWN1|RECF_STAA1 RecName: Full=DNA replication and repair protein recF gi|172048751|sp|A6QD43|RECF_STAAE RecName: Full=DNA replication and repair protein recF gi|189039645|sp|A6TXF4|RECF_STAA2 RecName: Full=DNA replication and repair protein recF gi|189039646|sp|A5INP5|RECF_STAA9 RecName: Full=DNA replication and repair protein recF gi|189039647|sp|A8YYS7|RECF_STAAT RecName: Full=DNA replication and repair protein recF gi|13699921|dbj|BAB41220.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus N315] gi|14245771|dbj|BAB56166.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus Mu50] gi|21203168|dbj|BAB93869.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus MW2] gi|49240386|emb|CAG39032.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus MRSA252] gi|49243359|emb|CAG41776.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus MSSA476] gi|57285298|gb|AAW37392.1| recF protein [Staphylococcus aureus subsp. aureus COL] gi|87201385|gb|ABD29195.1| DNA replication and repair protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739520|gb|ABQ47818.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus JH9] gi|149944936|gb|ABR50872.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus JH1] gi|150373015|dbj|BAF66275.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus str. Newman] gi|156720470|dbj|BAF76887.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367079|gb|ABX28050.1| recombination protein RecF [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728138|gb|EES96867.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH130] gi|257273218|gb|EEV05320.1| recombination protein F [Staphylococcus aureus subsp. aureus 55/2053] gi|257276508|gb|EEV07959.1| recombination protein F [Staphylococcus aureus subsp. aureus 65-1322] gi|257279994|gb|EEV10581.1| recombination protein F [Staphylococcus aureus subsp. aureus 68-397] gi|257283039|gb|EEV13171.1| recombination protein F [Staphylococcus aureus subsp. aureus E1410] gi|257285717|gb|EEV15833.1| recombination protein F [Staphylococcus aureus subsp. aureus M876] gi|257787514|gb|EEV25854.1| recombination protein RecF [Staphylococcus aureus A9781] gi|257840037|gb|EEV64502.1| recombination protein RecF [Staphylococcus aureus A9763] gi|257843134|gb|EEV67549.1| recombination protein F [Staphylococcus aureus A9719] gi|257848142|gb|EEV72134.1| recombination protein F [Staphylococcus aureus A9299] gi|257850845|gb|EEV74789.1| recombination protein F [Staphylococcus aureus A8115] gi|257855049|gb|EEV77992.1| recombination protein F [Staphylococcus aureus A6300] gi|257857551|gb|EEV80446.1| recombination protein RecF [Staphylococcus aureus A6224] gi|257860893|gb|EEV83710.1| recombination protein F [Staphylococcus aureus A5948] gi|257863498|gb|EEV86258.1| recombination protein F [Staphylococcus aureus A5937] gi|259160219|gb|EEW45248.1| DNA replication and repair protein [Staphylococcus aureus 930918-3] gi|259162433|gb|EEW47003.1| DNA replication and repair protein [Staphylococcus aureus D30] gi|262073984|gb|ACY09957.1| recombination protein F [Staphylococcus aureus subsp. aureus ED98] gi|269939530|emb|CBI47888.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus TW20] gi|282314767|gb|EFB45153.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus C101] gi|282323018|gb|EFB53337.1| RecF protein [Staphylococcus aureus subsp. aureus M899] gi|282323974|gb|EFB54290.1| recombination protein RecF [Staphylococcus aureus subsp. aureus WBG10049] gi|282326096|gb|EFB56401.1| recombination protein RecF [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329950|gb|EFB59471.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus Btn1260] gi|282590514|gb|EFB95592.1| DNA replication and repair protein recF [Staphylococcus aureus A10102] gi|282594131|gb|EFB99119.1| DNA replication and repair protein recF [Staphylococcus aureus A9765] gi|282763328|gb|EFC03458.1| DNA replication and repair protein recF [Staphylococcus aureus A8117] gi|283789080|gb|EFC27907.1| RecF protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290919217|gb|EFD96293.1| RecF protein [Staphylococcus aureus subsp. aureus M1015] gi|291096902|gb|EFE27160.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus 58-424] gi|291465519|gb|EFF08051.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus M809] gi|294823380|gb|EFG39809.1| DNA replication and repair protein recF [Staphylococcus aureus A9754] gi|294968333|gb|EFG44358.1| DNA replication and repair protein recF [Staphylococcus aureus A8819] gi|295127060|gb|EFG56704.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885909|gb|EFH24844.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177268|gb|EFH36521.1| DNA replication and repair protein recF [Staphylococcus aureus A8796] gi|297577708|gb|EFH96421.1| recombination protein F [Staphylococcus aureus subsp. aureus MN8] gi|298693326|gb|ADI96548.1| recF protein [Staphylococcus aureus subsp. aureus ED133] gi|300887651|gb|EFK82847.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH70] gi|302331776|gb|ADL21969.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302749915|gb|ADL64092.1| DNA repair and genetic recombination protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341532|gb|EFM07442.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436855|gb|ADQ75926.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH60] gi|312828567|emb|CBX33409.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129547|gb|EFT85539.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS03] gi|315195230|gb|EFU25618.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS00] gi|315197922|gb|EFU28255.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS01] gi|320141421|gb|EFW33264.1| recombination protein F [Staphylococcus aureus subsp. aureus MRSA131] gi|320144404|gb|EFW36169.1| recombination protein F [Staphylococcus aureus subsp. aureus MRSA177] gi|323439695|gb|EGA97413.1| recombination protein F [Staphylococcus aureus O11] gi|323443268|gb|EGB00885.1| recombination protein F [Staphylococcus aureus O46] gi|329312727|gb|AEB87140.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus T0131] gi|329725526|gb|EGG62005.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus 21172] gi|329731646|gb|EGG68006.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus 21189] Length = 370 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 94/376 (25%), Positives = 162/376 (43%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 IMNNAKLYRINQGEII 369 >gi|307711205|ref|ZP_07647627.1| DNA replication and repair protein recF [Streptococcus mitis SK321] gi|307617167|gb|EFN96345.1| DNA replication and repair protein recF [Streptococcus mitis SK321] Length = 365 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 164/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKQTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L S + + + +LS++ L Sbjct: 176 SVLDDQLIDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKEDL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + + Sbjct: 352 IFTIQDGKV 360 >gi|55823899|ref|YP_142340.1| recombination protein F [Streptococcus thermophilus CNRZ1066] gi|116628673|ref|YP_821292.1| recombination protein F [Streptococcus thermophilus LMD-9] gi|81676484|sp|Q5LXI7|RECF_STRT1 RecName: Full=DNA replication and repair protein recF gi|122266733|sp|Q03I76|RECF_STRTD RecName: Full=DNA replication and repair protein recF gi|55739884|gb|AAV63525.1| DNA repair and genetic recombination protein [Streptococcus thermophilus CNRZ1066] gi|116101950|gb|ABJ67096.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus thermophilus LMD-9] gi|312279328|gb|ADQ63985.1| DNA replication and repair protein recF [Streptococcus thermophilus ND03] Length = 366 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I FRNY+ + F IF+G N GKTNILEAI FL+ R R ++ Sbjct: 1 MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S ++ G+ ++ LE R ++N + + + H+ + Sbjct: 61 IQFQQNSL-----KLNGIVHRHSGNLPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDINFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+A+ G ++ R+E I L + + +L ++ + Q+ + Sbjct: 176 SVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPI-QNSKDI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + L K D + T +GPHR DL D + GS G+Q+ +++ + +A Sbjct: 235 REAFLTTLNQNHKRDIFKKNTGVGPHRDDLKFYINDMN--ASFGSQGQQRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI T PILLLD++ + LD ++ L + D Q FMT T +L K Sbjct: 293 IALIKKVTEEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPPNLK 351 Query: 364 FMRISNHQA 372 + N Sbjct: 352 TFLVKNGTI 360 >gi|283469233|emb|CAQ48444.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus ST398] Length = 370 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 94/376 (25%), Positives = 162/376 (43%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKETLSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSIDGIDHE 353 Query: 358 LNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 IMNNAKLYRINQGEII 369 >gi|329732499|gb|EGG68849.1| DNA replication and repair protein RecF [Staphylococcus aureus subsp. aureus 21193] Length = 370 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + H+ + Sbjct: 61 IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHINVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 IMNNAKLYRINQGEII 369 >gi|258423234|ref|ZP_05686126.1| recombination protein F [Staphylococcus aureus A9635] gi|257846563|gb|EEV70585.1| recombination protein F [Staphylococcus aureus A9635] Length = 370 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 93/376 (24%), Positives = 161/376 (42%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + EE L D + + +L GPHR D+ D +GS G+Q+ + Sbjct: 236 NEATRLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 IMNNAKLYRINQGEII 369 >gi|55821982|ref|YP_140424.1| recombination protein F [Streptococcus thermophilus LMG 18311] gi|81676637|sp|Q5M237|RECF_STRT2 RecName: Full=DNA replication and repair protein recF gi|55737967|gb|AAV61609.1| DNA repair and genetic recombination protein [Streptococcus thermophilus LMG 18311] Length = 366 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I FRNY+ + F IF+G N GKTNILEAI FL+ R R ++ Sbjct: 1 MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S ++ G+ ++ LE R ++N + + + H+ + Sbjct: 61 IQFQQNSL-----KLNGIVHRHSGNLPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDINFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+A+ G ++ R+E I L + + +L ++ + Q+ + Sbjct: 176 SVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPI-QNSKDI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + L K D + T +GPHR DL D + GS G+Q+ +++ + +A Sbjct: 235 REAFLTILNQNHKRDIFKKNTGVGPHRDDLKFYINDMN--ASFGSQGQQRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI T PILLLD++ + LD ++ L + D Q FMT T +L K Sbjct: 293 IALIKKVTEEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPPNLK 351 Query: 364 FMRISNHQA 372 + N Sbjct: 352 TFLVKNGTI 360 >gi|289168901|ref|YP_003447170.1| recombination protein recF [Streptococcus mitis B6] gi|288908468|emb|CBJ23310.1| recombination protein recF [Streptococcus mitis B6] Length = 365 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 84/370 (22%), Positives = 164/370 (44%), Gaps = 10/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQNLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L + + + +LS++ + L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLEYFGCKKHFELSNQIEELSISYQSSVNITDN-QNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYLNG--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQAL 373 I + + Sbjct: 352 IFTIQDGKVF 361 >gi|251783552|ref|YP_002997857.1| recombination protein F [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392184|dbj|BAH82643.1| recombination protein F [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 368 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKYYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRVSGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + Sbjct: 176 AVLDEQLASYGTRVMEHRIDFINALEKEANTHHQAISNGLENLSLSYQSSVVFDK-RTNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR DL S G+ + +++ + +A Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E + Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTI 361 >gi|182685163|ref|YP_001836910.1| recombination protein F [Streptococcus pneumoniae CGSP14] gi|226737843|sp|B2INP4|RECF_STRPS RecName: Full=DNA replication and repair protein recF gi|182630497|gb|ACB91445.1| recombination protein F [Streptococcus pneumoniae CGSP14] Length = 365 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTQTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L S + + + +LS++ L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQPSVNI-TDKQNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + +A Sbjct: 352 IFTIQDGKA 360 >gi|285815731|gb|ADC36218.1| DNA recombination and repair protein RecF [Staphylococcus aureus 04-02981] Length = 370 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 94/376 (25%), Positives = 162/376 (43%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEVLSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 IMNNAKLYRINQGEII 369 >gi|282902635|ref|ZP_06310528.1| RecF protein [Staphylococcus aureus subsp. aureus C160] gi|282918072|ref|ZP_06325822.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus D139] gi|282921294|ref|ZP_06329012.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus C427] gi|283767794|ref|ZP_06340709.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus H19] gi|282315709|gb|EFB46093.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus C427] gi|282318357|gb|EFB48717.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus D139] gi|282597094|gb|EFC02053.1| RecF protein [Staphylococcus aureus subsp. aureus C160] gi|283461673|gb|EFC08757.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus H19] Length = 370 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A E+ L D + + +L GPHR D+ D +GS G+Q+ + Sbjct: 236 NEAARLEDIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 IMNNAKLYRINQGEII 369 >gi|242372599|ref|ZP_04818173.1| recombination protein F [Staphylococcus epidermidis M23864:W1] gi|242349654|gb|EES41255.1| recombination protein F [Staphylococcus epidermidis M23864:W1] Length = 371 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 163/377 (43%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNSD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD---GKFD 237 + + Q A+ +K+ + R I L L KL+L ++ Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLALKYLPSLKLSDYE 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + L +E L D K + L GPHR DL + I +GS G+Q+ + Sbjct: 236 KDESELLDEVMTLLNDNLKREKERGVCLYGPHRDDLGFNVNGMDAQI-YGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RIS + L Sbjct: 354 EIMNNAKLYRISQGELL 370 >gi|57865928|ref|YP_190091.1| recombination protein F [Staphylococcus epidermidis RP62A] gi|251811367|ref|ZP_04825840.1| recombination protein F [Staphylococcus epidermidis BCM-HMP0060] gi|282874724|ref|ZP_06283603.1| DNA replication and repair protein RecF [Staphylococcus epidermidis SK135] gi|293367577|ref|ZP_06614230.1| recombination protein F [Staphylococcus epidermidis M23864:W2(grey)] gi|73914002|sp|Q5HK02|RECF_STAEQ RecName: Full=DNA replication and repair protein recF gi|57636586|gb|AAW53374.1| DNA replication and repair protein RecF [Staphylococcus epidermidis RP62A] gi|251805116|gb|EES57773.1| recombination protein F [Staphylococcus epidermidis BCM-HMP0060] gi|281296440|gb|EFA88955.1| DNA replication and repair protein RecF [Staphylococcus epidermidis SK135] gi|291318290|gb|EFE58683.1| recombination protein F [Staphylococcus epidermidis M23864:W2(grey)] gi|329724141|gb|EGG60659.1| DNA replication and repair protein RecF [Staphylococcus epidermidis VCU144] gi|329735750|gb|EGG72031.1| DNA replication and repair protein RecF [Staphylococcus epidermidis VCU028] gi|329736171|gb|EGG72444.1| DNA replication and repair protein RecF [Staphylococcus epidermidis VCU045] Length = 371 Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 163/377 (43%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFKSD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---FD 237 + + Q AE +K+ + R I L +L L+L K ++ Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNDRETLTLDYVPSLKLSNYE 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + L EE L D + + L GPHR DL + +GS G+Q+ + Sbjct: 236 ANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFNVNGMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVEGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RIS + L Sbjct: 354 EIMNNAKLYRISQGEIL 370 >gi|224477953|ref|YP_002635559.1| recombination protein F [Staphylococcus carnosus subsp. carnosus TM300] gi|254790488|sp|B9DPX1|RECF_STACT RecName: Full=DNA replication and repair protein recF gi|222422560|emb|CAL29374.1| DNA repair and genetic recombination protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 370 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 95/376 (25%), Positives = 162/376 (43%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNALQLENYRNYEEVVLDCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG + L + + +++N + + + HL + Sbjct: 61 IRFNAE-----YAKIEGELSYRHGKMPLTMFITKKGKKVKVNHLEQHRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQVRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQMKQKTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS- 239 + + Q AE +KI + RV IN L +L L L K + Sbjct: 176 TMLEVLNQQFAEYALKITLKRVHFINELETLAKPIHSSITDERETLDLEYRPSLKLSEET 235 Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L EE K L D + + L GPHR DL + +GS G+Q+ + Sbjct: 236 DEAKLYEEVQKLLQDNMEREIERGVALYGPHRDDLGFKVNEMD-AQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA LI+ G PILLLD++ + LD+ ++ L + D Q F+T T D Sbjct: 295 IKLAEIELINIEVGEYPILLLDDVLSELDDSRQTHLLSTIQDK-VQTFVTTTSVEGIDHE 353 Query: 358 LNETAKFMRISNHQAL 373 + + AK RI+ + + Sbjct: 354 IMKHAKLYRINQGEII 369 >gi|15904073|ref|NP_359623.1| recombination protein F [Streptococcus pneumoniae R6] gi|116516540|ref|YP_817437.1| recombination protein F [Streptococcus pneumoniae D39] gi|225857795|ref|YP_002739306.1| recombination protein F [Streptococcus pneumoniae P1031] gi|225862043|ref|YP_002743552.1| recombination protein F [Streptococcus pneumoniae Taiwan19F-14] gi|298229429|ref|ZP_06963110.1| recombination protein F [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255953|ref|ZP_06979539.1| recombination protein F [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501743|ref|YP_003723683.1| recombination protein F [Streptococcus pneumoniae TCH8431/19A] gi|51316461|sp|Q8DMX3|RECF_STRR6 RecName: Full=DNA replication and repair protein recF gi|122277717|sp|Q04HV1|RECF_STRP2 RecName: Full=DNA replication and repair protein recF gi|254790494|sp|C1CNK0|RECF_STRZP RecName: Full=DNA replication and repair protein recF gi|254790495|sp|C1CUE4|RECF_STRZT RecName: Full=DNA replication and repair protein recF gi|15459739|gb|AAL00834.1| Recombination protein RecF [Streptococcus pneumoniae R6] gi|116077116|gb|ABJ54836.1| recF protein [Streptococcus pneumoniae D39] gi|225725404|gb|ACO21256.1| DNA replication and repair protein RecF [Streptococcus pneumoniae P1031] gi|225727340|gb|ACO23191.1| DNA replication and repair protein RecF [Streptococcus pneumoniae Taiwan19F-14] gi|298237338|gb|ADI68469.1| recombination protein F [Streptococcus pneumoniae TCH8431/19A] gi|327388971|gb|EGE87319.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA04375] Length = 365 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L S + + + +LS++ L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + +A Sbjct: 352 IFTIQDGKA 360 >gi|325567638|ref|ZP_08144305.1| recombination protein F [Enterococcus casseliflavus ATCC 12755] gi|325159071|gb|EGC71217.1| recombination protein F [Enterococcus casseliflavus ATCC 12755] Length = 370 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 93/374 (24%), Positives = 170/374 (45%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++S +RNY SL L F+ IF+G+N GKTNILE+I L+ + R +S ++ Sbjct: 1 MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + AR+ G +I LE + R ++N + + + L + Sbjct: 61 IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + IDP + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239 + + Q+ G KI +AR + L+ + QK + L + + + S Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEATS 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +++++ K L + + + TL GPHR DL +K + GS G+Q+ + + Sbjct: 236 LEEIQQQFVKALAQVKDRERFRQVTLAGPHRDDLDFLINEKNV-QTFGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358 LA L+ TG P+LLLD++ + LD+ ++ L + Q F+T T D + Sbjct: 295 KLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGK-VQTFLTTTTLEHVKDKM 353 Query: 359 NETAKFMRISNHQA 372 + A+ + Sbjct: 354 SVEAEIFYVEQGHI 367 >gi|257866279|ref|ZP_05645932.1| recombination protein F [Enterococcus casseliflavus EC30] gi|257873205|ref|ZP_05652858.1| recombination protein F [Enterococcus casseliflavus EC10] gi|257800237|gb|EEV29265.1| recombination protein F [Enterococcus casseliflavus EC30] gi|257807369|gb|EEV36191.1| recombination protein F [Enterococcus casseliflavus EC10] Length = 370 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 93/374 (24%), Positives = 170/374 (45%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++S +RNY SL L F+ IF+G+N GKTNILE+I L+ + R +S ++ Sbjct: 1 MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + AR+ G +I LE + R ++N + + + L + Sbjct: 61 IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + IDP + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS- 239 + + Q+ G KI +AR + L+ + QK + L + + + S Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEAST 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +++++ K L + + + TL GPHR DL +K + GS G+Q+ + + Sbjct: 236 LEEIQQQFVKALAQVKDRERFRQVTLAGPHRDDLDFLINEKNV-QTFGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358 LA L+ TG P+LLLD++ + LD+ ++ L + Q F+T T D + Sbjct: 295 KLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGK-VQTFLTTTTLEHVKDKM 353 Query: 359 NETAKFMRISNHQA 372 + A+ + Sbjct: 354 SVEAEIFYVEQGHI 367 >gi|15902031|ref|NP_346635.1| recombination protein F [Streptococcus pneumoniae TIGR4] gi|111658642|ref|ZP_01409292.1| hypothetical protein SpneT_02000232 [Streptococcus pneumoniae TIGR4] gi|148984530|ref|ZP_01817818.1| recombination protein F [Streptococcus pneumoniae SP3-BS71] gi|148988871|ref|ZP_01820286.1| recombination protein F [Streptococcus pneumoniae SP6-BS73] gi|149003094|ref|ZP_01828003.1| recombination protein F [Streptococcus pneumoniae SP14-BS69] gi|149007732|ref|ZP_01831341.1| recombination protein F [Streptococcus pneumoniae SP18-BS74] gi|149020146|ref|ZP_01835120.1| recombination protein F [Streptococcus pneumoniae SP23-BS72] gi|168491759|ref|ZP_02715902.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC0288-04] gi|168494012|ref|ZP_02718155.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC3059-06] gi|169832646|ref|YP_001695579.1| recombination protein F [Streptococcus pneumoniae Hungary19A-6] gi|237651040|ref|ZP_04525292.1| recombination protein F [Streptococcus pneumoniae CCRI 1974] gi|237821153|ref|ZP_04596998.1| recombination protein F [Streptococcus pneumoniae CCRI 1974M2] gi|307128490|ref|YP_003880521.1| DNA replication and repair protein RecF [Streptococcus pneumoniae 670-6B] gi|20978636|sp|Q97N44|RECF_STRPN RecName: Full=DNA replication and repair protein recF gi|226737842|sp|B1IAD9|RECF_STRPI RecName: Full=DNA replication and repair protein recF gi|14973738|gb|AAK76275.1| DNA replication and repair protein RecF [Streptococcus pneumoniae TIGR4] gi|147758835|gb|EDK65831.1| recombination protein F [Streptococcus pneumoniae SP14-BS69] gi|147760727|gb|EDK67699.1| recombination protein F [Streptococcus pneumoniae SP18-BS74] gi|147923307|gb|EDK74421.1| recombination protein F [Streptococcus pneumoniae SP3-BS71] gi|147925682|gb|EDK76758.1| recombination protein F [Streptococcus pneumoniae SP6-BS73] gi|147930824|gb|EDK81805.1| recombination protein F [Streptococcus pneumoniae SP23-BS72] gi|168995148|gb|ACA35760.1| DNA replication and repair protein RecF [Streptococcus pneumoniae Hungary19A-6] gi|183573999|gb|EDT94527.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC0288-04] gi|183575893|gb|EDT96421.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC3059-06] gi|301795136|emb|CBW37609.1| DNA replication and repair protein RecF [Streptococcus pneumoniae INV104] gi|301800959|emb|CBW33621.1| DNA replication and repair protein RecF [Streptococcus pneumoniae OXC141] gi|306485552|gb|ADM92421.1| DNA replication and repair protein RecF [Streptococcus pneumoniae 670-6B] gi|332077793|gb|EGI88252.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA41301] gi|332199049|gb|EGJ13130.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA47901] Length = 365 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L S + + + +LS++ L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + +A Sbjct: 352 IFTIQDGKA 360 >gi|322375204|ref|ZP_08049718.1| DNA replication and repair protein RecF [Streptococcus sp. C300] gi|321280704|gb|EFX57743.1| DNA replication and repair protein RecF [Streptococcus sp. C300] Length = 365 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 163/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G+ SI LE R ++N + + + H+ + Sbjct: 61 IHFDNEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ E G ++ R++ I L + + + +LS++ F + L Sbjct: 176 SVLDDQLIEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNF-TNEEQL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 TSSFKIALDKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I N + Sbjct: 352 IFNIQNGKI 360 >gi|87161857|ref|YP_492726.1| recombination protein F [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|97180982|sp|Q2FKQ2|RECF_STAA3 RecName: Full=DNA replication and repair protein recF gi|87127831|gb|ABD22345.1| DNA replication and repair protein recF [Staphylococcus aureus subsp. aureus USA300_FPR3757] Length = 370 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 93/376 (24%), Positives = 161/376 (42%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L SL LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNHQAL 373 + K RI+ + + Sbjct: 354 IMNNPKLYRINQGEII 369 >gi|291482373|dbj|BAI83448.1| recombination protein F [Bacillus subtilis subsp. natto BEST195] Length = 370 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 160/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L +S +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ Sbjct: 1 MYIQNLELSSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + +I ++ + + ++N + + + + L Sbjct: 61 IRWDKD-----YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFLD + + P + + +++++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238 + + Q+ E+ K+ + R++ L + +L+L LD Sbjct: 176 TMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPL 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + Y + R+ + TL GPHR D++ + + +GS G+Q+ + Sbjct: 236 DLSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNH 370 A R+ N Sbjct: 354 TLRQAGMFRVQNG 366 >gi|225869472|ref|YP_002745420.1| DNA replication and repair protein RecF [Streptococcus equi subsp. zooepidemicus] gi|259563673|sp|C0MGR5|RECF_STRS7 RecName: Full=DNA replication and repair protein recF gi|225702748|emb|CAX00903.1| DNA replication and repair protein RecF [Streptococcus equi subsp. zooepidemicus] Length = 369 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 158/369 (42%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK LN++ +RNY F +F+GDN GKTN LEAI FLS R R S D+ Sbjct: 1 MWIKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G ++LE R +IN + + + + + Sbjct: 61 IYFDERDC-----SISGTLERLSGRVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L DS + Sbjct: 116 FAPEDLQLVKGSPSLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDSDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ G ++ R+ + +L+ ++ Q + KLS++ F+ + Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEASKHHQAISNGLEKLSISYQASVSFEH-QQEI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + + T +GPHR DL+ D S G+ + +++ + +A Sbjct: 235 YQQFMDQLKATHQRDFLRKNTGVGPHRDDLVFYINDMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L + Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNIRQTKLLEAVKKENVQTFITTTSLEHLSQLPKDIS 352 Query: 364 FMRISNHQA 372 +++ Sbjct: 353 LFKVNKGTI 361 >gi|221232925|ref|YP_002512079.1| DNA replication and repair protein RecF [Streptococcus pneumoniae ATCC 700669] gi|225855720|ref|YP_002737232.1| recombination protein F [Streptococcus pneumoniae JJA] gi|225859998|ref|YP_002741508.1| recombination protein F [Streptococcus pneumoniae 70585] gi|254790490|sp|C1CBK4|RECF_STRP7 RecName: Full=DNA replication and repair protein recF gi|254790491|sp|B8ZQB8|RECF_STRPJ RecName: Full=DNA replication and repair protein recF gi|254790493|sp|C1CHM6|RECF_STRZJ RecName: Full=DNA replication and repair protein recF gi|220675387|emb|CAR69989.1| DNA replication and repair protein RecF [Streptococcus pneumoniae ATCC 700669] gi|225719969|gb|ACO15823.1| DNA replication and repair protein RecF [Streptococcus pneumoniae 70585] gi|225724158|gb|ACO20011.1| DNA replication and repair protein RecF [Streptococcus pneumoniae JJA] Length = 365 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 166/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L + D ++ Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L S + + + +LS++ L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + +A Sbjct: 352 IFTIQDGKA 360 >gi|194398177|ref|YP_002038823.1| recombination protein F [Streptococcus pneumoniae G54] gi|226737841|sp|B5E455|RECF_STRP4 RecName: Full=DNA replication and repair protein recF gi|194357844|gb|ACF56292.1| DNA replication and repair protein RecF [Streptococcus pneumoniae G54] Length = 365 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 166/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L + D ++ Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L S + + + +LS++ L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + +A Sbjct: 352 IFTIQDGKA 360 >gi|27466921|ref|NP_763558.1| recombination protein F [Staphylococcus epidermidis ATCC 12228] gi|38258564|sp|Q8CQK5|RECF_STAES RecName: Full=DNA replication and repair protein recF gi|27314463|gb|AAO03600.1|AE016744_3 DNA repair and genetic recombination protein [Staphylococcus epidermidis ATCC 12228] Length = 371 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 91/377 (24%), Positives = 162/377 (42%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFKSD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---FD 237 + + Q E +K+ + R I L +L L+L K ++ Sbjct: 176 TMLEVLNQQFVEYALKVTLRREHFIKELETLAQPIHAGITNDQETLTLDYVPSLKLSNYE 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + L EE L D + + L GPHR DL + +GS G+Q+ + Sbjct: 236 ANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFNVNGMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVEGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RIS + L Sbjct: 354 EIMNNAKLYRISQGEIL 370 >gi|154684522|ref|YP_001419683.1| recombination protein F [Bacillus amyloliquefaciens FZB42] gi|166220699|sp|A7Z0C6|RECF_BACA2 RecName: Full=DNA replication and repair protein recF gi|154350373|gb|ABS72452.1| RecF [Bacillus amyloliquefaciens FZB42] Length = 370 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 157/376 (41%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L ++ +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ Sbjct: 1 MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + I ++ + + ++N + + + + L Sbjct: 61 IRWDED-----YAKIEGRVMKRNGDIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFLD + + + + +++++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQRNHFLKQLQSRKQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238 + + Q+ E K+ R++ L + +L+L LD + Sbjct: 176 TMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPK 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + Y + ++ + TL GPHR D++ + + +GS G+Q+ + Sbjct: 236 DLSKIGNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHD 353 Query: 358 LNETAKFMRISNHQAL 373 A R+ N + Sbjct: 354 TLHQAGMFRVENGTLV 369 >gi|311032259|ref|ZP_07710349.1| recombination protein F [Bacillus sp. m3-13] Length = 373 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 163/374 (43%), Gaps = 16/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + +RNY SL VF+ + +G+N GKTN++E+I L+ + R ++ D+ Sbjct: 1 MYIEELTLRHYRNYESLHAVFEDGVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + ++EG + + L+ + + +IN + + + ++ I Sbjct: 61 IRWDEE-----YGKIEGRIHKRNGELPLQLVISKKGKKAKINHIEQTKLSQYIGNMNIVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + + PR+ + ++++++ RN L D Sbjct: 116 FAPEDLTLVKGSPQVRRRFIDMELGQVSPRYMHDLSRYQKVLQQRNHYLKQLQTRKQKDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+ EL + R E + L S + + +L++ + Sbjct: 176 TMLFVLTEQLIELAASVTEKRQEFVQLLQSWAQPIHKSISRGLEELTIIYKPSIDYVSET 235 Query: 241 CALK---EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L E Y +K + + TL GPHR DL+ K + GS G+Q+ + Sbjct: 236 TNLSKMIEAYNEKFDKIKDREIERGVTLFGPHRDDLLFQVNGKDV-QTFGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA LI + G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 SLKLAEIDLIHSVVGEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIDH 353 Query: 357 -SLNETAKFMRISN 369 +L + A + +S Sbjct: 354 QTLKQAATYEVVSG 367 >gi|77407728|ref|ZP_00784483.1| DNA replication and repair protein RecF [Streptococcus agalactiae COH1] gi|77173727|gb|EAO76841.1| DNA replication and repair protein RecF [Streptococcus agalactiae COH1] Length = 369 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ +RNY ++ F IF+G N GKTN LEAI FL+ R R S ++ Sbjct: 1 MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ++ G + L+ + R ++N + + + + + Sbjct: 61 VHFKHHD-----VQITGEVIRKSGHLNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+FLD + I + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFLDIDIGQIKSTYLAELSNYNHVLKQRNTYLKTTNNVDKTFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A+ G ++ R + I AL+ ++ + LS+ +F ++ Sbjct: 176 TVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEF-TDKSSI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + +L D + T IGPHR D+ D I GS G+Q+ +++ + LA Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI T PILLLD++ + LD ++ L + + Q F+T T +L + K Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351 Query: 364 FMRISNHQA 372 +S+ Sbjct: 352 IFNVSDGTI 360 >gi|319399911|gb|EFV88157.1| DNA replication and repair protein recF [Staphylococcus epidermidis FRI909] Length = 371 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 163/377 (43%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNSD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---FD 237 + + Q AE +K+ + R I L +L L+L K ++ Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNHRETLTLDYVPSLKLSNYE 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + L EE L D + + L GPHR DL + +GS G+Q+ + Sbjct: 236 ANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFNVNGMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVEGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RIS + L Sbjct: 354 EIMNNAKLYRISQGELL 370 >gi|331267332|ref|YP_004326962.1| recombination protein F [Streptococcus oralis Uo5] gi|326684004|emb|CBZ01622.1| recombination protein F [Streptococcus oralis Uo5] Length = 365 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + R+ G+ SI LE R ++N + + + H+ + Sbjct: 61 IHFDNEQL-----RLSGLLQKKTSSIPLEIDLTPKGRVTKVNYLKQARLSDYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ E G ++ R++ I L + + + +LS++ F L Sbjct: 176 SVLDDQLVEYGCRVIRHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNF-TDEEQL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L R D + T +GPHR D+ AI + GS G+ + +++ + LA Sbjct: 235 TSSFKMALEKSRSRDLFKKNTGVGPHRDDITFYIN--AIDASFGSQGQHRSLVLSVKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I N + Sbjct: 352 IFNIQNGKI 360 >gi|308171895|ref|YP_003918600.1| DNA repair and genetic recombination factor [Bacillus amyloliquefaciens DSM 7] gi|307604759|emb|CBI41130.1| DNA repair and genetic recombination factor [Bacillus amyloliquefaciens DSM 7] gi|328551704|gb|AEB22196.1| recombination protein F [Bacillus amyloliquefaciens TA208] gi|328909963|gb|AEB61559.1| DNA repair and genetic recombination factor [Bacillus amyloliquefaciens LL3] Length = 370 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 156/373 (41%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L ++ +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ Sbjct: 1 MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + I ++ + + ++N + + + + L Sbjct: 61 IRWDED-----YAKIEGRVMKRNGDIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFLD + + + + +++++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQRNHFLKQLQSRKQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238 + + Q+ E K+ R++ L + +L+L LD + Sbjct: 176 TMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPK 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + Y + ++ + TL GPHR D++ + + +GS G+Q+ + Sbjct: 236 DLSKIGNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNH 370 A R+ N Sbjct: 354 TLHQAGMFRVENG 366 >gi|303254888|ref|ZP_07340973.1| recombination protein F [Streptococcus pneumoniae BS455] gi|303259715|ref|ZP_07345691.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP-BS293] gi|303262182|ref|ZP_07348127.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP14-BS292] gi|303264617|ref|ZP_07350536.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS397] gi|303266074|ref|ZP_07351968.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS457] gi|303268482|ref|ZP_07354276.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS458] gi|301802888|emb|CBW35669.1| DNA replication and repair protein RecF [Streptococcus pneumoniae INV200] gi|302598159|gb|EFL65220.1| recombination protein F [Streptococcus pneumoniae BS455] gi|302636822|gb|EFL67312.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP14-BS292] gi|302639267|gb|EFL69726.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP-BS293] gi|302641983|gb|EFL72336.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS458] gi|302644378|gb|EFL74631.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS457] gi|302645987|gb|EFL76215.1| DNA replication and repair protein RecF [Streptococcus pneumoniae BS397] Length = 365 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTQTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L S + + + +LS++ L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + +A Sbjct: 352 IFTIQDGKA 360 >gi|82749781|ref|YP_415522.1| recombination protein F [Staphylococcus aureus RF122] gi|97180987|sp|Q2YUN8|RECF_STAAB RecName: Full=DNA replication and repair protein recF gi|82655312|emb|CAI79692.1| DNA replication and repair protein [Staphylococcus aureus RF122] Length = 370 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 93/376 (24%), Positives = 161/376 (42%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q AE +K+ R I L L LSL KFD Q Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELELLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + A EE L D + + +L GPHR D+ D +GS G+Q+ + Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 IMNNAKLYRINQGEII 369 >gi|239825588|ref|YP_002948212.1| recombination protein F [Geobacillus sp. WCH70] gi|259563662|sp|C5D330|RECF_GEOSW RecName: Full=DNA replication and repair protein recF gi|239805881|gb|ACS22946.1| DNA replication and repair protein RecF [Geobacillus sp. WCH70] Length = 374 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 161/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +RNY S + F I +G+N GKTN++EAI L+ + R + D+ Sbjct: 1 MFLTHLSLKNYRNYESETIEFANNVNIILGENAQGKTNMMEAIYVLAMAKSHRTTNDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + ++ LE + + + N + + + + HL I Sbjct: 61 IRWDED-----YAKIEGKAMKKNGALSLELIISKKGKKAKCNHIEQQRLSQYVGHLNIVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + + P + + +++L++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMLQTREQQDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+ L KI + R E + L + + +++ +D Sbjct: 176 TVLDILTEQLIPLAAKITLKRYEFLLLLQKWAAPIHHEISRGLETLQIQYRPSVDVSEKI 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E Y++K ++ + TL GPHR D+ K + I GS G+Q+ + Sbjct: 236 ELSRIIEAYSEKFATIKEREIQRGMTLAGPHRDDIAFSVNGKDVQI-FGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA LI + G PILLLD++ + LD+ ++ L + Q F+T T + Sbjct: 295 IKLAEIELIFSEIGDYPILLLDDVLSELDDFRQTHLLDTIRKK-VQTFVTTTSIEGIEHD 353 Query: 358 LNETAKFMRISNHQA 372 + + A ++ + Sbjct: 354 IIKEAAIYKVHSGHI 368 >gi|319945993|ref|ZP_08020242.1| recombination protein F [Streptococcus australis ATCC 700641] gi|319747801|gb|EFW00046.1| recombination protein F [Streptococcus australis ATCC 700641] Length = 362 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 96/369 (26%), Positives = 165/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I +FRNY + L F + IF+G N GKTN+LE+I FL+ R R S D+ Sbjct: 1 MWLKSIHIQKFRNYKDVDLQFHSGLNIFLGQNAQGKTNLLESIYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F V G+ SI LE R +IN + + ++ + Sbjct: 61 IHFQEEQF-----TVSGILEKKTGSIPLEISLSSKGRVTKINHLKQSKLSTYIGNMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 P ++ G RR+F+D + + P + + + +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGSPALRRKFIDIDLGQMKPVYLSDLTAYHHVLKQRNSYLKTATTVDPTFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q+A+ G ++ I R + + L E + + KL++ F Q L Sbjct: 176 DVLDEQLADYGSRVCIHRKDFLKKLEYFGQEKHFEISNQAEKLTIRYDSSIPF-QDEETL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ + L + R D + + T +GPHR D+ D GS G+ + V++ I LA Sbjct: 235 RQTFIILLRENRTKDLIKKTTSVGPHRDDITFYINDMN--ATFGSQGQHRSVVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI + T PILLLD++ + LD +++ L +++ Q F+T T L E K Sbjct: 293 ISLIESLTKEKPILLLDDVMSELDNNRQLHLLEVISR-DIQTFITTTTLDHLKDLPEDLK 351 Query: 364 FMRISNHQA 372 I + Q Sbjct: 352 IFNIHSGQV 360 >gi|257875896|ref|ZP_05655549.1| recombination protein F [Enterococcus casseliflavus EC20] gi|257810062|gb|EEV38882.1| recombination protein F [Enterococcus casseliflavus EC20] Length = 370 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 93/374 (24%), Positives = 170/374 (45%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++S +RNY SL L F+ IF+G+N GKTNILE+I L+ + R +S ++ Sbjct: 1 MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + AR+ G +I LE + R ++N + + + L + Sbjct: 61 IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + IDP + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS- 239 + + Q+ G KI +AR + L+ + QK + L + + + S Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEAST 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +++++ K L + + + TL GPHR DL +K + GS G+Q+ + + Sbjct: 236 LEEIQQQFVKALALVKDRERFRQVTLAGPHRDDLDFLINEKNV-QTFGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358 LA L+ TG P+LLLD++ + LD+ ++ L + Q F+T T D + Sbjct: 295 KLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGK-VQTFLTTTTLEHVKDKM 353 Query: 359 NETAKFMRISNHQA 372 + A+ + Sbjct: 354 SVEAEIFYVEQGHI 367 >gi|148993621|ref|ZP_01823092.1| recombination protein F [Streptococcus pneumoniae SP9-BS68] gi|168489301|ref|ZP_02713500.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP195] gi|147927842|gb|EDK78864.1| recombination protein F [Streptococcus pneumoniae SP9-BS68] gi|183572210|gb|EDT92738.1| DNA replication and repair protein RecF [Streptococcus pneumoniae SP195] gi|332071670|gb|EGI82163.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA17570] Length = 365 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L S + + + +LS++ L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + +A Sbjct: 352 IFTIQDGKA 360 >gi|288554609|ref|YP_003426544.1| recombination protein F [Bacillus pseudofirmus OF4] gi|288545769|gb|ADC49652.1| recombination protein F [Bacillus pseudofirmus OF4] Length = 371 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 161/374 (43%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L I +FRNY + L FD + +F+G+N GKTN +EAI L+ + R + ++ Sbjct: 1 MFIKSLLIRQFRNYERVELEFDERMNVFIGENAQGKTNTIEAIYVLALAKSHRTSKDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R FA+V+G I+L+ + +++N + R + E + + Sbjct: 61 IRWNDE-----FAKVQGQVQRQSGPIELDLVISTKGKKVKLNGLEQRKLSEYVGAVNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P + G RRRF+D + I P + + ++++++ RN LL + G Sbjct: 116 FAPEDLNLVKGSPQLRRRFIDMELGQISPVYLHHLGLYQKVLQQRNFLLKDLQIGKGSKD 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL--DGKFDQS 239 + Q+ EL V+I R + L E + + L + D + Sbjct: 176 MLDILTDQLIELAVQITKRRFVFLGQLQKWAEEIHRDISRAKETLKIIYKPSCDVLEEMD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +KE + + + ++ + TL GPHR DL + + +GS G+Q+ + + Sbjct: 236 MPKMKEVFIETYENKKQREIARGVTLFGPHRDDLGFLVNEHDV-QTYGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSL 358 LA LI G PILLLD++ + LD+ ++ L + Q F+T T V Sbjct: 295 KLAEIELIHAEVGEYPILLLDDVLSELDDYRQTHLLHTIGQ-RVQTFVTTTSITGVHHEA 353 Query: 359 NETAKFMRISNHQA 372 + A ++ Sbjct: 354 LDGASIFKVEQGTI 367 >gi|21911391|ref|NP_665659.1| recombination protein F [Streptococcus pyogenes MGAS315] gi|28896763|ref|NP_803113.1| recombination protein F [Streptococcus pyogenes SSI-1] gi|25453245|sp|Q8K5G2|RECF_STRP3 RecName: Full=DNA replication and repair protein recF gi|21905607|gb|AAM80462.1| RecF protein [Streptococcus pyogenes MGAS315] gi|28812017|dbj|BAC64946.1| RecF protein [Streptococcus pyogenes SSI-1] Length = 368 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L F + +F+G+N GKTN LEAI FLS R R + ++ Sbjct: 1 MWIKELELKHYRNYDQLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSQRTRADKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S +++ + G D+ I L + R +IN + + + + + Sbjct: 61 IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A G ++ R++ INAL + Q + LSL+ FD+ + Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + T +GPHR DL S G+ + +++ + +A Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L E + Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352 Query: 364 FMRISNHQA 372 ++ Sbjct: 353 IFHVTKGTV 361 >gi|229542312|ref|ZP_04431372.1| DNA replication and repair protein RecF [Bacillus coagulans 36D1] gi|229326732|gb|EEN92407.1| DNA replication and repair protein RecF [Bacillus coagulans 36D1] Length = 370 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 162/376 (43%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RNY +L + F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MYLQELELHNYRNYETLTIPFENKVNVILGENAQGKTNLMEAIYVLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A+++G S+ LE + + + N + + + ++ + Sbjct: 61 IRWDAE-----YAKIKGRLHKTHGSVPLELTISKKGKKAKYNHIEQKKLSRYIGNMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D + I P + M F+++++ RN L + D Sbjct: 116 FAPEDLNLVKGSPQVRRRFIDMEIGQISPVYLYDMSRFQKILQQRNHYLKQLQMKKQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+ E KI + R E + L + +++ ++ + Sbjct: 176 TMLDILTEQLIEQAAKIVMRRFEFVRMLEEWARPIHHSISRGLEQLEIQYKPSVNVSEEL 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + + Y K + R+ + T+ GPHR DL + + GS G+Q+ + Sbjct: 236 DWSKMIKSYENKFAEIREREIDRGVTMAGPHRDDLAFVVNGRDV-HTFGSQGQQRTAALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357 + LA LI + PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 VKLAEIELIYSEIREYPILLLDDVLSELDDYRQSHLLNAIQG-RVQTFVTTTSVDGVDHQ 353 Query: 358 LNETAKFMRISNHQAL 373 A + Q + Sbjct: 354 TLREASMYTVKAGQIV 369 >gi|329117358|ref|ZP_08246075.1| DNA replication and repair protein RecF [Streptococcus parauberis NCFD 2020] gi|326907763|gb|EGE54677.1| DNA replication and repair protein RecF [Streptococcus parauberis NCFD 2020] Length = 364 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 161/369 (43%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L ++ FRNY L + F IF+G+N GKTNILEAI F++ R R S ++ Sbjct: 1 MWLKELTLNHFRNYNDLNINFSEGLNIFIGNNAQGKTNILEAIYFIALTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + +EG +I LE R +IN + + E + + Sbjct: 61 IQFSTDRL-----SIEGKLNRLSGNISLEINLSDKGRITKINSLKQAKLSEYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D + Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHILKQRNAYLKAARTIDFDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ Q++ G ++ R++ I L + Q + L + QS + Sbjct: 176 VVLDQQLSYYGSRVIQQRIQFIADLEKEADAHHQAISNELESLQIKYISSIDTSQS-QLI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E++ ++L R+ D + T IGPHR D+ + S G+ + +++ I +A Sbjct: 235 QEKFMEQLERNRQRDIFRKNTSIGPHRDDIEFYINNMN--ANFASQGQHRSLILSIKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L +T K Sbjct: 293 VSLMKILTGDNPILLLDDVMSELDNTRQTKLIETVIQENVQTFITTTSLEHLSQLPKTLK 352 Query: 364 FMRISNHQA 372 +++ Sbjct: 353 TFHVTSGTI 361 >gi|148997971|ref|ZP_01825484.1| recombination protein F [Streptococcus pneumoniae SP11-BS70] gi|168576099|ref|ZP_02722004.1| DNA replication and repair protein RecF [Streptococcus pneumoniae MLV-016] gi|307068837|ref|YP_003877803.1| recombinational DNA repair ATPase [Streptococcus pneumoniae AP200] gi|147755981|gb|EDK63024.1| recombination protein F [Streptococcus pneumoniae SP11-BS70] gi|183578126|gb|EDT98654.1| DNA replication and repair protein RecF [Streptococcus pneumoniae MLV-016] gi|306410374|gb|ADM85801.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus pneumoniae AP200] gi|332198641|gb|EGJ12724.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA41317] Length = 365 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 166/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L + D ++ Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L S + + + +LS++ L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L + D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSKSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + +A Sbjct: 352 IFTIQDGKA 360 >gi|222153952|ref|YP_002563129.1| recombination protein F [Streptococcus uberis 0140J] gi|254790492|sp|B9DWE6|RECF_STRU0 RecName: Full=DNA replication and repair protein recF gi|222114765|emb|CAR43930.1| DNA replication and repair protein RecF [Streptococcus uberis 0140J] Length = 364 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 87/367 (23%), Positives = 161/367 (43%), Gaps = 9/367 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + FRNY ++ F +F+G+N GKTN LEAI FL+ R R + ++ Sbjct: 1 MWIKELQLRNFRNYGTVDTEFSPGLNVFIGNNAQGKTNFLEAIYFLALTRSHRTRTDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + ++ G ++ LE + R +IN + + + + + Sbjct: 61 IQFSKNNL-----QLIGKLNRISGALSLELQLSDKGRITKINALKQARLSDYIGTMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L +S + Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLSDLSNYNYVLKQRNTYLKTISTINSDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+A+ G K+ R++ I L+ ++ + + L +T Q + Sbjct: 176 SVLDEQLADYGSKVIKHRIDFIGELTREANKHHEAISNGLESLIITYESSVT-QQDHQTI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + L R+ D + T IGPHR D+ D S G+ + +++ + +A Sbjct: 235 KEAFLLNLQKNRQRDIFKKNTSIGPHRDDIHFFINDMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V + Q F+T T L + K Sbjct: 293 VSLMKEMTGDNPILLLDDVMSELDNTRQIKLLETVINENVQTFITTTSLDHLLHLPDKIK 352 Query: 364 FMRISNH 370 ++ Sbjct: 353 TFHVNQG 359 >gi|195979034|ref|YP_002124278.1| recombination protein F [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226737837|sp|B4U113|RECF_STREM RecName: Full=DNA replication and repair protein recF gi|195975739|gb|ACG63265.1| DNA replication and repair protein RecF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 369 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 157/369 (42%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK LN++ +RNY F +F+GDN GKTN LEAI FLS R R S D+ Sbjct: 1 MWIKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G ++LE R +IN + + + + + Sbjct: 61 IYFDERDC-----SISGTLERLSGRVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L DS + Sbjct: 116 FAPEDLQLVKGSPSLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDSDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ G ++ R+ + +L+ ++ Q + KLS++ F+ + Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEANKHHQAISNGLEKLSISYQASVSFEH-QQEI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + + T +GPHR DLI S G+ + +++ + +A Sbjct: 235 YQQFMDQLKTTHQRDFLRKNTGVGPHRDDLIFYINGMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L + Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNIRQTKLLEAVKKENVQTFITTTSLKHLSQLPKDIS 352 Query: 364 FMRISNHQA 372 +++ Sbjct: 353 LFKVNKGTI 361 >gi|327438159|dbj|BAK14524.1| recombinational DNA repair ATPase [Solibacillus silvestris StLB046] Length = 372 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L ++ +RNY SL L F + +F+G+N GKTN++E+I L+ + R A+ ++ Sbjct: 1 MNIERLQLTNYRNYESLTLDFSDKINVFIGENAQGKTNVMESIYVLAMAKSHRTANDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + ++EG+ + +E + + +IN + + + + Sbjct: 61 IRWDAD-----YGKIEGVVNKRYGGVPIELTISKKGKKGKINHLEQTKLSNYIGQMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P I G RRRF+D + I P + ++ F+++++ RN LL + S Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKILKQRNHLLKKNMGKQSLAS 175 Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 Q + ++I R + I L + KL + D S Sbjct: 176 DVMFEIYTEQYVQAAIQIIRKRFQFIELLQDWAEPIHFGISRGLEKLVIKYRPVTGMDAS 235 Query: 240 F--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + + + KKL + ++ + TLIGPHR DL D + + +GS G+Q+ + Sbjct: 236 WTAEEMADYLTKKLEEVKQREIERGVTLIGPHRDDLQFFVNDYDVQV-YGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356 + LA LI T PILLLD++ + LD+ +++ L + Q F+T T + + Sbjct: 295 SLKLAEIELIKQETKETPILLLDDVLSELDDYRQSHLLNTIQG-EVQTFVTTTSVEGIHH 353 Query: 357 SLNETAKFMRISNHQA 372 + AK R++ Sbjct: 354 DTIQHAKLFRVTQGTI 369 >gi|149012798|ref|ZP_01833743.1| recombination protein F [Streptococcus pneumoniae SP19-BS75] gi|147763229|gb|EDK70168.1| recombination protein F [Streptococcus pneumoniae SP19-BS75] Length = 365 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L S + + + +LS++ L Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L + D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 SESFKIALEKSKSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + +A Sbjct: 352 IFTIQDGKA 360 >gi|322388468|ref|ZP_08062071.1| recombination protein F [Streptococcus infantis ATCC 700779] gi|321140781|gb|EFX36283.1| recombination protein F [Streptococcus infantis ATCC 700779] Length = 363 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 89/368 (24%), Positives = 163/368 (44%), Gaps = 10/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L+I +FRNY + + F+ + +FVG N GKTN+LE+I FL+ R R + ++ Sbjct: 1 MWLKNLSIKQFRNYRDVEVNFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +V G+ SI LE + R ++N + + + H+ + Sbjct: 61 IQFEEEQL-----QVSGILQKKTASIPLEIDLTQKGRITKVNYLKQARLSDYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGAPAIRRKFIDIELGQIKPIYLSDLSSYNHVLKQRNTYLKSTQNIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ E G ++ R + I + + + LS+ F L Sbjct: 176 SVLDDQLVEYGCRVMNHRADFIQKMELFGKKKHFDISDQLENLSIRYQPFVNF-VDKKHL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L R D + T +GPHR D+I + + GS G+ + +++ I LA Sbjct: 235 AESFHIALQKSRPRDLFKKNTGVGPHRDDMIFMING--MEASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L + Sbjct: 293 IELMESITKESPILLLDDVMSELDNTRQLKLLETISH-NIQTFITTTSLDHLQNLPDNLS 351 Query: 364 FMRISNHQ 371 + N Q Sbjct: 352 VFTVDNGQ 359 >gi|319746166|gb|EFV98437.1| recombination protein F [Streptococcus agalactiae ATCC 13813] Length = 355 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 10/364 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ +RNY ++ F IF+G N GKTN LEAI FL+ R R S ++ Sbjct: 1 MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ++ G + L+ + R ++N + + + + + Sbjct: 61 VHFKHHD-----VQITGEVIRKSGHLNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+FLD + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+A+ G ++ R + I AL+ ++ + LS+ +F ++ Sbjct: 176 TVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEF-TDKSSI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E + +L D + T IGPHR D+ D I GS G+Q+ +++ + LA Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI T PILLLD++ + LD ++ L + + Q F+T T +L + K Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351 Query: 364 FMRI 367 + Sbjct: 352 IFNV 355 >gi|295402120|ref|ZP_06812079.1| DNA replication and repair protein RecF [Geobacillus thermoglucosidasius C56-YS93] gi|312109155|ref|YP_003987471.1| DNA replication and repair protein RecF [Geobacillus sp. Y4.1MC1] gi|294975803|gb|EFG51422.1| DNA replication and repair protein RecF [Geobacillus thermoglucosidasius C56-YS93] gi|311214256|gb|ADP72860.1| DNA replication and repair protein RecF [Geobacillus sp. Y4.1MC1] Length = 374 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 162/375 (43%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +RNY S + F I +G+N GKTN++EAI L+ + R A+ D+ Sbjct: 1 MFLTHLSLKNYRNYKSETIQFANNVNIILGENAQGKTNMMEAIYVLAMAKSHRTANDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG ++ LE + + + N V + + + HL I Sbjct: 61 IRWDED-----YAKIEGRATTKSGALSLELIISKKGKKAKCNHVEQQRLSQYVGHLNIVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + + P + + +++L++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMLQTREQQDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+ L KI + R E + L ++ + +++ +D Sbjct: 176 TVLDILTEQLIPLAAKITLKRHEFLLLLEKWAAPIHREISRGLETLQIQYRPSVDVSERM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E Y++K ++ + TL GPHR D++ K + GS G+Q+ + Sbjct: 236 ELSRIIEAYSEKFATIKEREIQRGMTLAGPHRDDILFSVNGKDV-QTFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA LI + G PILLLD++ + LD+ ++ L + Q F+T T + Sbjct: 295 IKLAEIELIFSEIGDYPILLLDDVLSELDDFRQTHLLDAIRQK-VQTFVTTTSIDGIEHD 353 Query: 358 LNETAKFMRISNHQA 372 + + A ++ + Sbjct: 354 IIKEAAIYKVHSGHV 368 >gi|225871475|ref|YP_002747422.1| DNA replication and repair protein RecF [Streptococcus equi subsp. equi 4047] gi|254790489|sp|C0MBG1|RECF_STRE4 RecName: Full=DNA replication and repair protein recF gi|225700879|emb|CAW95638.1| DNA replication and repair protein RecF [Streptococcus equi subsp. equi 4047] Length = 369 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 158/369 (42%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK LN++ +RNY F +F+GDN GKTN LEAI FLS R R S D+ Sbjct: 1 MWIKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G ++LE R +IN + + + + + Sbjct: 61 IYFDERDC-----SISGTLERLSGRVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D+ + Sbjct: 116 FAPEDLQLVKGSPNLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDNDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ G ++ R+ + +L+ ++ Q + KLS++ F+ + Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEANKHHQAISNGLEKLSISYQASVSFEH-QQEI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +++ +L + D + + T +GPHR DL+ D S G+ + +++ + +A Sbjct: 235 YQQFMNQLKTTHQRDFLRKNTGVGPHRDDLVFYINDMN--ANFASQGQHRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ TG PILLLD++ + LD ++ L V Q F+T T L + Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNTRQTKLLGAVKKENVQTFITTTSLEHLSQLPKDIS 352 Query: 364 FMRISNHQA 372 +++ Sbjct: 353 LFKVNKGTI 361 >gi|23097459|ref|NP_690925.1| recombination protein F [Oceanobacillus iheyensis HTE831] gi|51316469|sp|Q8EU85|RECF_OCEIH RecName: Full=DNA replication and repair protein recF gi|22775682|dbj|BAC11960.1| DNA repair and genetic recombination [Oceanobacillus iheyensis HTE831] Length = 369 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 165/373 (44%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L ++ +RNY L + FD Q + +G+N GKTN++EAI LS R R ++ Sbjct: 1 MHIEKLELTNYRNYDQLEIAFDDQINVIIGENAQGKTNLMEAIYVLSFARSHRTPREKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +A++EG + SI L+ + ++N + + + + + Sbjct: 61 IQWDKD-----YAKIEGRITKRNQSIPLQISITSKGKKAKVNHLEQHRLSDYIGSVNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I P + + ++++++ RN LL + D+ Sbjct: 116 FAPEDLTIVKGAPQIRRRFMDMELGQIQPTYIYHLAQYQKVLKQRNHLLKQLQRKPNSDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+ E + R + L + + +++ + ++ D Sbjct: 176 TMLEVLTDQLIEHASILLERRFIYLELLRKWAQPIHRGISRELEQLEIQYSPSIEVSEDA 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + Y K + ++ + TL GPHR DLI K + +GS G+Q+ + Sbjct: 236 NKEKIGNIYQMKFAEVKQKEIERGTTLAGPHRDDLIFFVNGKDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357 I LA LI G PILLLD++ + LD+ +++ L + Q F++ T + + Sbjct: 295 IKLAEIELIYQEVGEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVSTTSVEGIHHE 353 Query: 358 LNETAKFMRISNH 370 + A+ R+++ Sbjct: 354 TLQQAELFRVTDG 366 >gi|304405886|ref|ZP_07387544.1| DNA replication and repair protein RecF [Paenibacillus curdlanolyticus YK9] gi|304345129|gb|EFM10965.1| DNA replication and repair protein RecF [Paenibacillus curdlanolyticus YK9] Length = 367 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 90/374 (24%), Positives = 156/374 (41%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + +RNYA L L +++ +F+G N GKTN+LE+I L+ + R A ++ Sbjct: 1 MFLKRIALRNYRNYAELELDTNSKVNLFIGPNAQGKTNLLESIFALALTKSHRTAKDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A + G ++KL+ + +IN + R + + L + Sbjct: 61 IGWNGTD-----AHIHGEADKQYGTVKLDLMLSAQGKKAKINGLEQRRLSDFVGSLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P I G RRRFLD + + P + + + +++ RN L G Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVQPGYLHTLQQYSKVLVQRNNYLKTLWSSGGDKQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 AQ+A+ GVKI R I+ L + +L+++ +F+ Sbjct: 176 GLLEVWNAQLADFGVKIIKKRKYFIHKLQQWAEQIHAGITAGSEQLTVSYKPSFEFEDE- 234 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L E + KL ++ + TL+GPHR DL+ K GS G+Q+ + + Sbjct: 235 SVLFEHFMLKLTQVKEQEIRRGTTLVGPHRDDLMFFINGKE-AQTFGSQGQQRTTALSLK 293 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359 LA LI G P+LLLD++ + LD +++ L Q F+T T D Sbjct: 294 LAEIELIREEIGEYPLLLLDDVLSELDRNRQTQLIETFQSK-VQTFITATGLESVDVGKL 352 Query: 360 ETAKFMRISNHQAL 373 + A + + + Sbjct: 353 QDAGIYHVQEGRVM 366 >gi|317126745|ref|YP_004093027.1| DNA replication and repair protein RecF [Bacillus cellulosilyticus DSM 2522] gi|315471693|gb|ADU28296.1| DNA replication and repair protein RecF [Bacillus cellulosilyticus DSM 2522] Length = 373 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 156/376 (41%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + I ++RNY L L F+ + + +G+N GKTN++E+I L+ + R ++ Sbjct: 1 MYIKQITIRDYRNYDHLTLPFNNKINVIIGENAQGKTNLMESIYVLAMAKSHRTTKDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P FA+VEG + +++E + ++IN + + + E I Sbjct: 61 IRWDQP-----FAKVEGQINNKNGPLQMEVIFSTKGKKVKINHLEKKRLSEYIGSCNIVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEGYFD 179 P + G RRRFLD + I P + + + + ++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRRFLDMEMGQIHPVYLYYLSQYHKQLKQRNQWLKDVLQKKQKPD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFD 237 ++ + Q+ + R + I L + ++++ ++ D Sbjct: 176 ATMLDVMTDQLIISAGHVIEKRYDFIKKLQKWAAPIHHDISRGLESLEINYVPSINVSED 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L ++ + + TLIGPHR DL + I GS G+Q+ + Sbjct: 236 MDLSTLLTVLKEEFDRLKDNELRRGITLIGPHRDDLQFLVNGRDI-QTFGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T + Sbjct: 295 SVKLAELELIHEKVGEYPILLLDDVLSELDDHRQSHLLNTIQGK-VQTFVTTTSVDGIEH 353 Query: 357 SLNETAKFMRISNHQA 372 + A + + Sbjct: 354 ATLRNADMFYVQEGKI 369 >gi|314935204|ref|ZP_07842557.1| DNA replication and repair protein RecF [Staphylococcus hominis subsp. hominis C80] gi|313656539|gb|EFS20278.1| DNA replication and repair protein RecF [Staphylococcus hominis subsp. hominis C80] Length = 371 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 90/377 (23%), Positives = 165/377 (43%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY ++ L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYVLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNSE-----YAKIEGELSYRHGTMPLTMYITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKTDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q A+ + + + R + I L +L LSLT K + Sbjct: 176 TMLEVLNQQFAQYALNVTLRREQFIEELEALAQPIHAGITNQRETLSLTYLPSIKLSDTS 235 Query: 241 ---CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L +E L + ++ + L GPHR DL + D +GS G+Q+ + Sbjct: 236 KNKSELLDEVITLLNEYQQREMDRAVCLYGPHRDDLGFNVNDMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 EIMNNAKLYRINQGEII 370 >gi|222150257|ref|YP_002559410.1| recombination protein F [Macrococcus caseolyticus JCSC5402] gi|254790482|sp|B9E903|RECF_MACCJ RecName: Full=DNA replication and repair protein recF gi|222119379|dbj|BAH16714.1| recombination protein F [Macrococcus caseolyticus JCSC5402] Length = 369 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 96/373 (25%), Positives = 167/373 (44%), Gaps = 12/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L ++ +RNY + L F + IF+G N GKTN+LEAI L+ + R ++ ++ Sbjct: 1 MKLKTLTLTHYRNYETAELNFSDEVNIFIGINAQGKTNLLEAIYCLAMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F+ +EGM ++ L + + ++N + + + E H+ + Sbjct: 61 IGWGHE-----FSHIEGMLSYKHGTMPLSLSISKKGKKAKVNYLEQKRLTEYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P + G RRRF+D + I + + +++RL++ +N LL + D Sbjct: 116 FAPEDLNLVKGSPQIRRRFIDMEIGQISAVYLNDLSNYQRLLKQKNHLLKQMKLSNSNDM 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + I Q A+ VK+ + R I L +L + +LSL ++ + Sbjct: 176 TMLEVINEQFAQYAVKLTLRRKMFIEQLETLAIPIHTGITKDKERLSLRYNASLNYELAE 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + EE + L + ++L GPHR DL D + +GS G+Q+ + I Sbjct: 236 QEMFEETIRILNANMGKEIERTQSLYGPHRDDLSFKINDIDV-QTYGSQGQQRTTALSIK 294 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359 LA LI+ G PILLLD++ + LD+D++ L + Q F+T T + Sbjct: 295 LAEIELINQEIGEYPILLLDDVLSELDDDRQTHLLTTIQHK-VQTFVTTTSVEGIEHETI 353 Query: 360 ETAKFMRISNHQA 372 AK +S Q Sbjct: 354 NKAKLFNVSEGQI 366 >gi|315612172|ref|ZP_07887087.1| recombination protein F [Streptococcus sanguinis ATCC 49296] gi|315315733|gb|EFU63770.1| recombination protein F [Streptococcus sanguinis ATCC 49296] Length = 365 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 162/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY ++ F+ + +F+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G+ SI LE R ++N + + + H+ + Sbjct: 61 IHFDNEQL-----HLTGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+ + G ++ R++ I L + + + KLS++ F + L Sbjct: 176 SVLDDQLIDYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEKLSISYQSSVNF-TNEEQL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L R D + T +GPHR D+ + + GS G+ + +++ I LA Sbjct: 235 TSSFKIALDKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351 Query: 364 FMRISNHQA 372 I + Sbjct: 352 IFNIQKGKI 360 >gi|297582342|ref|YP_003698122.1| DNA replication and repair protein RecF [Bacillus selenitireducens MLS10] gi|297140799|gb|ADH97556.1| DNA replication and repair protein RecF [Bacillus selenitireducens MLS10] Length = 373 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 168/374 (44%), Gaps = 15/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L ++++RNY L L F+ + +F+G+N GKTN++EAI L+ R R A ++ Sbjct: 1 MHINELKLTDYRNYTKLHLTFENRVNVFLGENAQGKTNVMEAIYVLAMARSHRTAKDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P FARVEG + ++KLE + +++N + + + + I Sbjct: 61 IRWDQP-----FARVEGAVTNRNGAMKLEMIFSGRGKKVKLNALERKRLSDYIGACTIVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GYFD 179 P + G RRRFLD + I + + + +L++ RN L + FD Sbjct: 116 FAPEDLALVKGSPQIRRRFLDMEMGQIFTIYLYYLSQYYKLLKQRNTWLKQLQQKSSSFD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238 + Q+ E G ++ R +N L + + L+L K D Sbjct: 176 EGMWHVLTEQLVEAGAEVIQRRFSFLNKLEAWATPIHSAISRDKETLTLHYESTVKADDE 235 Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S +K+ + ++ + + T+IGPHR D+ D+ + +GS G+Q+ + Sbjct: 236 MSVDVIKQVFFEQFQQVMEQEIRRGTTIIGPHRDDVAFFVNDRNV-QTYGSQGQQRTAAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356 + LA LI TG PILLLD++ + LD+ ++ L + Q F+T T + + Sbjct: 295 SVKLAEIELIHEKTGEYPILLLDDVLSELDDHRQTHLLNSIQGK-VQTFVTTTSVEGIHH 353 Query: 357 SLNETAKFMRISNH 370 + E A +++ Sbjct: 354 EMLEKASTYLVNDG 367 >gi|225626554|ref|ZP_03784593.1| DNA replication and repair protein RecF [Brucella ceti str. Cudo] gi|260169593|ref|ZP_05756404.1| recombination protein F [Brucella sp. F5/99] gi|261759119|ref|ZP_06002828.1| DNA replication and repair protein recF [Brucella sp. F5/99] gi|225618211|gb|EEH15254.1| DNA replication and repair protein RecF [Brucella ceti str. Cudo] gi|261739103|gb|EEY27099.1| DNA replication and repair protein recF [Brucella sp. F5/99] Length = 384 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 165/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M R ++IN + D+L + R Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARTQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|253573851|ref|ZP_04851193.1| DNA replication and repair protein RecF [Paenibacillus sp. oral taxon 786 str. D14] gi|251846328|gb|EES74334.1| DNA replication and repair protein RecF [Paenibacillus sp. oral taxon 786 str. D14] Length = 370 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 90/375 (24%), Positives = 157/375 (41%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +RNY +L L + +G N GKTN+LEA+ L+ + R ++ Sbjct: 1 MFVNRLSLQNYRNYGTLTLDAFGAVNLIIGRNAQGKTNLLEALFVLALTKSHRTGKDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GS + A VE G ++LE R + ++N + R + + + + Sbjct: 61 IAFGSDHALVS-AEVEKKYG----PVQLELRLSPQGKKAKLNGLEQRKLSDFIGAMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRFLD + + P + + +++++ RN LL + G Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVQPSYLYHLQQYQKVLIQRNNLLKQAWGAGPEIK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238 + Q+ + GVKI R + I+ L + + +KL+ ++ Sbjct: 176 TMLEIWNEQLVQHGVKIIKKRKQFISKLQKWAEQIHEGITGGGETLKLAYLPSFGTAEEE 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L +++ KL + + TL GPHR DL + +GS G+Q+ + Sbjct: 236 DEAVLLQQFMIKLSQMKDQEIRRGMTLCGPHRDDLSF-IINGNEAQVYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357 + LA LI G PILLLD++ + LD ++ L Q F+T T +S+ S Sbjct: 295 LKLAEIELIHEEIGEYPILLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGIESINAS 353 Query: 358 LNETAKFMRISNHQA 372 + A + Q Sbjct: 354 RLQDASIFHVQEGQV 368 >gi|228474213|ref|ZP_04058950.1| DNA replication and repair protein RecF [Staphylococcus hominis SK119] gi|228271908|gb|EEK13245.1| DNA replication and repair protein RecF [Staphylococcus hominis SK119] Length = 371 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 91/377 (24%), Positives = 165/377 (43%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY ++ L + I +G+N GKTN+LE+I L+ + R A+ ++ Sbjct: 1 MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYVLALAKSHRTANDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFNSE-----YAKIEGELSYRHGTMPLTMYITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKTDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q A+ + + + R + I L +L LSLT K + Sbjct: 176 TMLEVLNQQFAQYALNVTLRREQFIEELEALAQPIHAGITNQRETLSLTYLPSIKLSDTS 235 Query: 241 ---CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L +E L + ++ + L GPHR DL + D +GS G+Q+ + Sbjct: 236 KNKSELLDEVITLLNEYQQREMDRAVCLYGPHRDDLGFNVNDMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTI-QYKVQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RI+ + + Sbjct: 354 EIMNNAKLYRINQGEII 370 >gi|326692338|ref|ZP_08229343.1| DNA replication and repair protein RecF [Leuconostoc argentinum KCTC 3773] Length = 375 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 160/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L ++ +RNYA L L F A +F+G+N GKTN+LE+I L+ R R +S D+ Sbjct: 1 MELTSLTLTNYRNYADLTLDFSAGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + S A + G L + ++N + + + L + Sbjct: 61 IRWQANS-----ATISGRVKKNVSETPLALHFSTKGKKARVNHLEQSKLSQYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D ++P + + R+++ RN L D Sbjct: 116 FAPEDLDLVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKDRNAYLKRLQMKQTTDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQ 238 + S + AQ+ ++G ++ +AR + L + + L+L F D Sbjct: 176 VFLSVLTAQLVDVGAQVFLARRRFLERLQVAAQPIHAEISNQQETLTLAYQTGVAFKRDD 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +K + L + M TL+GPHR D+ + + + GS G+Q+ + Sbjct: 236 DLETVKAAFEAALARQEAREIMQGTTLVGPHRDDIKFIVNENDVAV-FGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDS 357 + LA L+ TG P+LLLD++ + LD +++ L + D Q F+T T V Sbjct: 295 VKLAEIDLMQEETGEYPVLLLDDVLSELDANRQTHLLLAIQDK-VQTFITAPTLSDVARQ 353 Query: 358 LNETAKFMRISNHQA 372 L T K + + + Sbjct: 354 LIHTPKVFHVQHGEI 368 >gi|294851413|ref|ZP_06792086.1| DNA replication and repair protein recF [Brucella sp. NVSL 07-0026] gi|294820002|gb|EFG37001.1| DNA replication and repair protein recF [Brucella sp. NVSL 07-0026] Length = 384 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 165/371 (44%), Positives = 230/371 (61%), Gaps = 2/371 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M R + IN + D+L + R Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVCINGIAA-SADDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIVAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|166032887|ref|ZP_02235716.1| hypothetical protein DORFOR_02608 [Dorea formicigenerans ATCC 27755] gi|166027244|gb|EDR46001.1| hypothetical protein DORFOR_02608 [Dorea formicigenerans ATCC 27755] Length = 361 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 161/373 (43%), Gaps = 19/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L + FRNY L L FD IF GDN GKTNILEA+ + R + D+ Sbjct: 1 MKIKSLKLKNFRNYELLNLEFDDSTNIFYGDNAQGKTNILEAVYLSGTTKSHRGSKDRDM 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S G++ D+ +K + + IN + IR EL + + Sbjct: 61 IRFGAEESHIEVIVEKRGIQDQIDMHLK-----KNRPKGVAINKIPIRKAGELFGIVNLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180 + P I RR+F+D + +D + + ++ R++ RN LL + + Sbjct: 116 FFSPEDLNIIKNGPAGRRKFIDLELSQLDKVYFNHLSNYSRVVNQRNHLLKDSAYRQDAM 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ + G I R + ++ ++ ++ +K ++ L K Sbjct: 176 ETLDIWDLQLVQYGNAIIARRKQFVDEMNEIVSGIHKKLTGGKEEIRLIYEPSTK----- 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + L R+ D + T +GPHR D+ + I GS G+Q+ + + Sbjct: 231 ---NMSLEQALEMNRQRDIRMKSTSVGPHRDDVCFMVGNLDIR-RFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ TG P+LLLD++ + LD+ ++N L + DI + I TG D+ V E Sbjct: 287 LAEIELVKRVTGDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVDEFVNHRF-E 345 Query: 361 TAKFMRISNHQAL 373 K + N Q + Sbjct: 346 VNKVFHVQNGQVI 358 >gi|157690802|ref|YP_001485264.1| recombination protein F [Bacillus pumilus SAFR-032] gi|166918720|sp|A8F8Y7|RECF_BACP2 RecName: Full=DNA replication and repair protein recF gi|157679560|gb|ABV60704.1| recombination protein F [Bacillus pumilus SAFR-032] Length = 370 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 158/376 (42%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L ++ +RNY L FD + + +G+N GKTN++EAI LS + R ++ ++ Sbjct: 1 MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + + ++ + + ++N + + + L Sbjct: 61 IRWDQD-----YAKIEGRVIKKNGPLPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFLD + + + + +++++ RN L D Sbjct: 116 FAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQRNHYLKQLQTRKQTDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238 + + Q+ + K+ R+ L + L+L ++ Sbjct: 176 AMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYHTAIEVSEAS 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +K Y + R + TL GPHR DL+ + + +GS G+Q+ + Sbjct: 236 DLSKIKNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T D + Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVEGIDHA 353 Query: 358 LNETAKFMRISNHQAL 373 + A+ R+++ + + Sbjct: 354 TLKEAEIFRVASGKVI 369 >gi|322373988|ref|ZP_08048522.1| DNA replication and repair protein RecF [Streptococcus sp. C150] gi|321276954|gb|EFX54025.1| DNA replication and repair protein RecF [Streptococcus sp. C150] Length = 367 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 165/369 (44%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I FRNY+ + F IF+G N GKTNILEAI FL+ R R S ++ Sbjct: 1 MWLEKIDIQHFRNYSEAYVTFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + ++ G + LE R ++N + + + H+ + Sbjct: 61 IQFQQSTL-----KLSGTVHRRSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D + Sbjct: 116 FAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDIDFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S ++ Q+A+ G ++ R++ I L ++ + +L+++ + Q+ ++ Sbjct: 176 SVLDEQLADFGARVIEHRLDFIKQLEVEADKHHSLLSNQIERLNISYESNISL-QNHKSI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ + L K D + T +GPHR DL D + GS G+Q+ +++ + +A Sbjct: 235 RQAFLITLRQNHKRDIFKKNTGVGPHRDDLTFYINDMN--ASFGSQGQQRSLILSLKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 LI N TG PILLLD++ + LD ++ L + D Q FMT T +L K Sbjct: 293 IALIRNVTGEFPILLLDDVMSELDNHRQLKLLESI-DKEVQTFMTTTSLDHLTNLPPDLK 351 Query: 364 FMRISNHQA 372 + Sbjct: 352 AFVVEAGSI 360 >gi|299820838|ref|ZP_07052727.1| recombination protein F [Listeria grayi DSM 20601] gi|299817859|gb|EFI85094.1| recombination protein F [Listeria grayi DSM 20601] Length = 369 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 12/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY L + F +F+G+N GKTN+LEAI L+ + R A+ D Sbjct: 1 MHLENMVLRNFRNYPFLEVDFSPAVNVFLGENAQGKTNLLEAILMLALAKSHRTANDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S A++EG S+ LE + ++N + + + + +L + Sbjct: 61 INWDSEE-----AKIEGRVFRRGQSVPLELMITPKGKKAKVNHLEQKKLSQYVGNLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180 P + G RRRFL+ + + P + + ++R+++ RN+ L D Sbjct: 116 FAPEDLSLVKGAPGVRRRFLNMEIAQMQPVYLHELSQYQRVLQQRNQYLKAAQMSKKADP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q AE+ + I R E + L + + +L++ ++ Sbjct: 176 IMLDILNEQFAEIAITITKRRSEFVKKLIRFAAPLHYQISRELEQLTIRYAASIDLQETD 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + K +KL +K + TLIGPHR DL ++ + + GS G+Q+ + I Sbjct: 236 ESTKTSVMEKLQKNKKRELERGVTLIGPHRDDLHFYINEQDVQV-FGSQGQQRTTALSIK 294 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359 LA L+ G P+LLLD++ + LD+ +++ L + Q F+T T+ S D + Sbjct: 295 LAEIDLLKEEIGEYPVLLLDDVLSELDDFRQSHLLGAIEGK-VQTFVTTTNISGIDHNTI 353 Query: 360 ETAKFMRISNHQA 372 + A ++ Sbjct: 354 KQATTYTVTQGSV 366 >gi|194016619|ref|ZP_03055233.1| DNA replication and repair protein RecF [Bacillus pumilus ATCC 7061] gi|194012092|gb|EDW21660.1| DNA replication and repair protein RecF [Bacillus pumilus ATCC 7061] Length = 370 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 158/376 (42%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L ++ +RNY L FD + + +G+N GKTN++EAI LS + R ++ ++ Sbjct: 1 MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + + ++ + + ++N + + + L Sbjct: 61 IRWDQD-----YAKIEGRVIKKNGPLPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFLD + + + + +++++ RN L D Sbjct: 116 FAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQRNHYLKQLQTRKQKDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238 + + Q+ + K+ R+ L + L+L ++ Sbjct: 176 AMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYHTAIEVSEAS 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +K Y + R + TL GPHR DL+ + + +GS G+Q+ + Sbjct: 236 DLSKIKNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T D + Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVEGIDHA 353 Query: 358 LNETAKFMRISNHQAL 373 + A+ R+++ + + Sbjct: 354 TLKEAEIFRVASGKVI 369 >gi|323463205|gb|ADX75358.1| DNA replication and repair protein RecF [Staphylococcus pseudintermedius ED99] Length = 371 Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 159/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY + L + I +G+N GKTN+LE+I L+ + R + ++ Sbjct: 1 MKLKTLQLENYRNYEQISLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTTNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG + L + + +++N + + + HL + Sbjct: 61 IRFNAE-----YAKIEGELNFRHGMMPLTMFITKKGKKVKVNHLEQSRLTQYIGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ RN L + D+ Sbjct: 116 FAPEDLSIVKGAPQVRRRFIDMELGQISRLYLNDLSQYQRILKQRNHYLKQLQLKKTQDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--- 237 + + Q E VK+ R + I L L L+L K + Sbjct: 176 TMLEVLNHQFVEYAVKVTQRRQQFIKELELLAAPIHSGITNERETLTLQYLPSIKIEDVS 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 QS L ++ + + + + +L GPHR DL +GS G+Q+ + Sbjct: 236 QSEDVLIQQVLEDVQHHMEREIERGVSLYGPHRDDLAFQVNGMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNQEVGEYPILLLDDVLSELDDARQTHLLSTIQHK-VQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRISNHQA 372 + + AK RI+ Sbjct: 354 EIMKDAKVYRITQGNI 369 >gi|331270703|ref|YP_004397195.1| DNA replication and repair protein RecF [Clostridium botulinum BKT015925] gi|329127253|gb|AEB77198.1| DNA replication and repair protein RecF [Clostridium botulinum BKT015925] Length = 360 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 171/370 (46%), Gaps = 13/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + FRNY +L L F+ +FVGDN GKTNILE+I + G+ R ++ Sbjct: 1 MYIKNLQVINFRNYDNLVLEFNKGINVFVGDNAQGKTNILESIYYCGLGKSHRTNKDKEL 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + GS ++ S + E ++ DI I E + +++N + ++ + +L + Sbjct: 61 IKWGSKDAYVSIYVCKERLDKKIDIKIFKE-----GKKGVKVNSIKLKTISDLIGIFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P +I + RR+FLD + ++ ++ ++ + +++ RN +L + D Sbjct: 116 MFSPEDLKIVKESPLYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNTILRKWNSDKGVT 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++ G I R++ I +LS + K+ K +F + Sbjct: 176 EVYDHQLSKYGSFIIKERLKYIESLSIKGKRIHDEITSHKEKIEFKYITSIK---NFNNI 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + L D T GPHR D I++ + T GS G+Q+ ++ I LA Sbjct: 233 QSGFFDILRKNLDKDFEKGSTSFGPHRDDFIININNTD-TRTFGSQGQQRTAILTIKLAS 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362 +I TG P+LLLD++ + LD +++ + + Q +TGT ++ D L++ Sbjct: 292 LEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIKKF--QTIITGTGILNIKDYLDDHV 349 Query: 363 KFMRISNHQA 372 K +++N Sbjct: 350 KLFKVTNGTV 359 >gi|326802620|ref|YP_004320438.1| DNA replication and repair protein RecF [Aerococcus urinae ACS-120-V-Col10a] gi|326650777|gb|AEA00960.1| DNA replication and repair protein RecF [Aerococcus urinae ACS-120-V-Col10a] Length = 372 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 162/375 (43%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + +FRNY + + FD +F+GDN GKTN++EAI LS R R A +V Sbjct: 1 MHLKSLYLKDFRNYDQVTMDFDPGINVFIGDNAQGKTNLIEAIYMLSLARSHRTAKEREV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FAR+EG + I L + + ++N + + + + Sbjct: 61 IRFGAD-----FARIEGRVAKKNGEIPLSLTMTKKGKIAKLNRLQQERLSDYIGAFNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RR F+DR + ++P + +++ L++ RN L D Sbjct: 116 FAPEDLELVKGAPQLRRTFIDRELSQMNPTYLYDSSNYQHLLKQRNTYLKQLQRREAHDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + + Q+ + ++ + R + I L + + + L+L D+ Sbjct: 176 LYLNVLTEQLVDFASRMMVQRFQFIQKLEAYAKPIHAQLSMDKETLTLAYQASLTVDETS 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + LK E K ++ + T IGP R DL + DK + +GS G+Q+ ++ Sbjct: 236 TVDQLKTELMDKFQSIQEREIEVGSTQIGPQRDDLKLMINDK-VVQQYGSQGQQRTTVLS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA + T G PILLLD++ + LD+ ++ L + + Q F+T T + Sbjct: 295 LKLAEIECMHETLGEYPILLLDDVLSELDDQRQTHLLKTIEKK-VQTFLTTTSMEGIQAD 353 Query: 359 N-ETAKFMRISNHQA 372 + I Q Sbjct: 354 KIDDPDLFTIKAGQV 368 >gi|167461554|ref|ZP_02326643.1| recombination protein F [Paenibacillus larvae subsp. larvae BRL-230010] Length = 377 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 160/373 (42%), Gaps = 17/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RNY + LV D IFVG N GKTN+LE+I L+ + R ++ Sbjct: 1 MFLQRLTLHHYRNYQHVELVTDRNVNIFVGPNAQGKTNLLESIYVLALTKSHRTHHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S A ++G S L+ + +IN + + + + L + Sbjct: 61 IQWEGES-----ALLQGDVEKKYGSYSLDLAISSKGKKAKINGLEQKKLSQFIGALNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P I G RRRFLD + + P + + +++++ RN +L + + S Sbjct: 116 FAPEDLEIIKGNPGIRRRFLDMEIGQVYPGYLYDLSQYQKVLAQRNNMLKKAFPAPSAEH 175 Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-- 237 Q+A+ GVKI R I L + + +L++ Sbjct: 176 AAMLDIWNEQLAQFGVKIMKKRQNFIKKLQNWAEQIHDGITNGGEELTIRYQPSFAVQDF 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + L E++ KL + + +L GPHR DL+ DK + +GS G+Q+ + Sbjct: 236 EDETVLMEQFMIKLSQIKDQEIRRGVSLAGPHRDDLLFYINDKEV-QTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVF 355 + LA LI + G PILLLD++ + LDE ++ L + Q F+T T + Sbjct: 295 SLKLAEIELIHSEVGEYPILLLDDVLSELDEYRQTQLIQTFQKK-VQTFITTTGLESVHL 353 Query: 356 DSLNETAKFMRIS 368 D L E A R++ Sbjct: 354 DQL-EDASVFRVT 365 >gi|18308986|ref|NP_560920.1| recombination protein F [Clostridium perfringens str. 13] gi|110801062|ref|YP_694479.1| recombination protein F [Clostridium perfringens ATCC 13124] gi|110802319|ref|YP_697355.1| recombination protein F [Clostridium perfringens SM101] gi|168207733|ref|ZP_02633738.1| DNA replication and repair protein RecF [Clostridium perfringens E str. JGS1987] gi|168212007|ref|ZP_02637632.1| DNA replication and repair protein RecF [Clostridium perfringens B str. ATCC 3626] gi|168215270|ref|ZP_02640895.1| DNA replication and repair protein RecF [Clostridium perfringens CPE str. F4969] gi|168218303|ref|ZP_02643928.1| DNA replication and repair protein RecF [Clostridium perfringens NCTC 8239] gi|169343436|ref|ZP_02864436.1| DNA replication and repair protein RecF [Clostridium perfringens C str. JGS1495] gi|182627052|ref|ZP_02954777.1| DNA replication and repair protein RecF [Clostridium perfringens D str. JGS1721] gi|20978577|sp|Q8XPF9|RECF_CLOPE RecName: Full=DNA replication and repair protein recF gi|122956936|sp|Q0SWY1|RECF_CLOPS RecName: Full=DNA replication and repair protein recF gi|123345112|sp|Q0TV61|RECF_CLOP1 RecName: Full=DNA replication and repair protein recF gi|18143661|dbj|BAB79710.1| DNA repair and genetic recombination protein [Clostridium perfringens str. 13] gi|110675709|gb|ABG84696.1| DNA replication and repair protein RecF [Clostridium perfringens ATCC 13124] gi|110682820|gb|ABG86190.1| DNA replication and repair protein RecF [Clostridium perfringens SM101] gi|169298388|gb|EDS80477.1| DNA replication and repair protein RecF [Clostridium perfringens C str. JGS1495] gi|170660924|gb|EDT13607.1| DNA replication and repair protein RecF [Clostridium perfringens E str. JGS1987] gi|170710063|gb|EDT22245.1| DNA replication and repair protein RecF [Clostridium perfringens B str. ATCC 3626] gi|170713334|gb|EDT25516.1| DNA replication and repair protein RecF [Clostridium perfringens CPE str. F4969] gi|177907578|gb|EDT70217.1| DNA replication and repair protein RecF [Clostridium perfringens D str. JGS1721] gi|182379694|gb|EDT77173.1| DNA replication and repair protein RecF [Clostridium perfringens NCTC 8239] Length = 361 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 165/371 (44%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY +L + +F+GDN GKTN++EAI + + R ++ Sbjct: 1 MYIKSLQLINYRNYENLSIKLCPNVNVFIGDNAQGKTNVIEAIYYCGFAKSHRTNRDKEL 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 +F + ++ + D++I + + IN + I + EL + Sbjct: 61 IEWNKDRAFIRLDVHKDRLDKIIDVNI-----LKDGKKAISINSIKISKIGELIGTFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P +I RRRF+D + ++ R+ ++ + +++ RN +L + Sbjct: 116 MFSPEDLKIVKESPGIRRRFIDMELSQLNKRYYHNLVQYNKVLHERNLVLKNKNINEEML 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A+ G I R++ I L+ E ++ ++ K + Sbjct: 176 DIYDIQLAQYGENIIKTRLKYIEQLNKYSKEIHKEITSGKEEIEFKYISTVK---DLDNI 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K+ K L RK D R T IGPHR D + + I +GS G+Q+ ++ I A Sbjct: 233 KDSMIKLLEQNRKKDIDKRATSIGPHRDDFNIYLNNIDAKI-YGSQGQQRTSVLTIKFAS 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 ++I TG P+LLLD++ + LD +++ + + +I + I TG + + L+E +K Sbjct: 292 LKIIKEITGEYPVLLLDDVLSELDFNRKRYVLTSIKNIQTVITCTGIE-DLTSYLDENSK 350 Query: 364 FMRISNHQALC 374 R+ N + C Sbjct: 351 VFRVINGRIQC 361 >gi|253681218|ref|ZP_04862016.1| DNA replication and repair protein RecF [Clostridium botulinum D str. 1873] gi|253562456|gb|EES91907.1| DNA replication and repair protein RecF [Clostridium botulinum D str. 1873] Length = 360 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 169/370 (45%), Gaps = 13/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + FRNY +L L F +F+G+N GKTNILE+I + S G+ R ++ Sbjct: 1 MYIKNLQLVNFRNYENLVLEFSEGINVFIGNNAQGKTNILESIYYCSIGKSHRTNKDKEL 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + GS ++ S + ++ DI + E + +++N + ++ + +L + Sbjct: 61 IKWGSKNAYVSIYVCKNRLDKKIDIKVFKE-----GKKGIKVNSIKLKTISDLIGTFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P +I + RR+FLD + ++ ++ ++ + +++ RN +L + Sbjct: 116 MFSPEDLKIVKESPLYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNAILRRWNSNKDVT 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++ G I R++ I +LS + + K +F + Sbjct: 176 EVYDQQLSKYGSFIIKERLKYIESLSIKGKRIHDEITSQKENIEFKYITCIK---NFNNI 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + E+ + L + D T GPHR D I++ + T GS G+Q+ ++ I LA Sbjct: 233 ESEFFEILRKNLEKDFEKGSTSFGPHRDDFIININNTD-TRTFGSQGQQRTAILTIKLAS 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362 +I TG P+LLLD++ + LD +++ + + Q +TGT ++ D L+ Sbjct: 292 LEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIKKF--QTIITGTGILNIKDYLDNHV 349 Query: 363 KFMRISNHQA 372 K ++N Sbjct: 350 KLFEVTNGTV 359 >gi|126651998|ref|ZP_01724190.1| recombination protein F [Bacillus sp. B14905] gi|126591267|gb|EAZ85376.1| recombination protein F [Bacillus sp. B14905] Length = 371 Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 157/375 (41%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + ++ +RNY +L L F + +F+G+N GKTN++E+I L+ + R + ++ Sbjct: 1 MHIEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S + ++EG + +E + + +IN + + + + Sbjct: 61 IRWDSD-----YGKIEGAVQKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + I P + ++ F+++++ RN L + + Sbjct: 116 FAPEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMNQGKSMSND 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 Q +I R + ++ L + L + + + Sbjct: 176 VMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIHAGISQGKETLVIKYRTVAGIEKEH 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S ++ +KL + R+ + TL+GPHR DL + +GS G+Q+ + Sbjct: 236 SSSEIENTLHQKLMEAREREFDRGVTLVGPHRDDLQFLVNGYDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357 + LA LI T PILLLD++ + LD+ +++ L + Q F+T T + + Sbjct: 295 LKLAEIELIKQETNETPILLLDDVLSELDDYRQSHLLNTIQG-EVQTFVTTTSVEGIHHE 353 Query: 358 LNETAKFMRISNHQA 372 E A+ + Sbjct: 354 TMEQAQLFHVKQGAI 368 >gi|296110747|ref|YP_003621128.1| recombination protein F [Leuconostoc kimchii IMSNU 11154] gi|295832278|gb|ADG40159.1| recombination protein F [Leuconostoc kimchii IMSNU 11154] Length = 372 Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 156/375 (41%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNYA L+L F +F+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MELTSLKLVNYRNYADLKLDFSDGVNVFLGENAQGKTNLLESIYVLALTRSHRTSSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R A + G L + ++N + + + L + Sbjct: 61 IRWHEKE-----ATISGRVKKNISETPLSLHFSNKGKRARVNHLEQSKLSQYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D ++P + + R+++ RN L D+ Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKERNAYLKRLQMKQTTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + + Q+ ++G ++ +AR L + + +L+L F+ Sbjct: 176 VFLDVLTEQLVDVGAQVILARQAFTERLQAAAQPIHAEIANQLEQLTLIYQTSVDFESGD 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +K + + L + + M TL+GPHR DL D + I GS G+Q+ + Sbjct: 236 ELATVKLAFEQALKKQQAREIMQGSTLVGPHRDDLQFIVNDNDVAI-FGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDS 357 + LA L+ TG PILLLD++ + LD +++ L + D Q F+T T V Sbjct: 295 VKLAEIDLMQQETGEYPILLLDDVLSELDANRQTHLLLAIQDK-VQTFITSPTLSDVARQ 353 Query: 358 LNETAKFMRISNHQA 372 L T K + Sbjct: 354 LIHTPKIFHVQQGNI 368 >gi|169825625|ref|YP_001695783.1| hypothetical protein Bsph_0007 [Lysinibacillus sphaericus C3-41] gi|226737813|sp|B1HS35|RECF_LYSSC RecName: Full=DNA replication and repair protein recF gi|168990113|gb|ACA37653.1| RecF [Lysinibacillus sphaericus C3-41] Length = 371 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 157/375 (41%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + ++ +RNY +L L F + +F+G+N GKTN++E+I L+ + R + ++ Sbjct: 1 MHIEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S + ++EG + +E + + +IN + + + + Sbjct: 61 IRWDSD-----YGKIEGAVQKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + I P + ++ F+++++ RN L + + Sbjct: 116 FAPEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMNQGKSMSND 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 Q +I R + ++ L + L + + + Sbjct: 176 VMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIHAGISQGKETLIIKYRTVAGIEKEH 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S ++ +KL + R+ + TL+GPHR DL + +GS G+Q+ + Sbjct: 236 SSSEIENTLHQKLMEAREREFDRGVTLVGPHRDDLQFLVNGYDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357 + LA LI T PILLLD++ + LD+ +++ L + Q F+T T + + Sbjct: 295 LKLAEIELIKQETNETPILLLDDVLSELDDYRQSHLLNTIQG-EVQTFVTTTSVEGIHHE 353 Query: 358 LNETAKFMRISNHQA 372 E A+ + Sbjct: 354 TMEQAQLFHVKQGAI 368 >gi|257871392|ref|ZP_05651045.1| recombination protein F [Enterococcus gallinarum EG2] gi|257805556|gb|EEV34378.1| recombination protein F [Enterococcus gallinarum EG2] Length = 370 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 169/374 (45%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L ++ +RNY SL L FD IF+G+N GKTN+LE+I L+ + R S ++ Sbjct: 1 MRLNNLQLNNYRNYESLELSFDKNLVIFLGENAQGKTNVLESIYVLAMTKSHRTTSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A+V G +I LE + R ++N + + + L + Sbjct: 61 IRWDTAG-----AQVSGAVSRGHSTIPLELFLTKKGRKTKVNHIEQKKLSSYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + IDP + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLFEKKQNDE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-GKFDQS 239 + + + Q+ E G KI AR + L+ + QK + L + G S Sbjct: 176 LYLTVLTEQLIEFGSKIIFARQRFVKRLAFWANQLHQKISDEKEVLQIEYLSSVGTVSAS 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +++++ L + + M + +L+GPHR DL D+ + GS G+Q+ + + Sbjct: 236 LEQVQQQFKDALDQVKTREKMRQISLVGPHRDDLNFLINDRNV-QTFGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358 LA L+ TG P+LLLD++ + LD+ ++ L + Q F+T T D + Sbjct: 295 KLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGK-VQTFITTTTLEHVKDKM 353 Query: 359 NETAKFMRISNHQA 372 + A+ + Sbjct: 354 SVEAEIFYVDKGHI 367 >gi|315644303|ref|ZP_07897473.1| DNA replication and repair protein RecF [Paenibacillus vortex V453] gi|315280678|gb|EFU43967.1| DNA replication and repair protein RecF [Paenibacillus vortex V453] Length = 370 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 156/378 (41%), Gaps = 16/378 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ +RNY L+L + +G N GKTN++EA+ L+ + R + ++ Sbjct: 1 MFVKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSKDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + A V ++KLE + + +IN + R + + L + Sbjct: 61 I-----GFEQSHAHVSAEIDRKYGALKLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRFLD + + P + + +++++ RN LL + G + Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSAEQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQ 238 + +Q+AE GVKI R + I L Q LSL ++ Sbjct: 176 AMLDIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAEEE 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L E + KL ++ + TL GPHR DL K + +GS G+Q+ + Sbjct: 236 DEAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAFYINGKEV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--D 356 + LA LI G P+LLLD++ + LD ++ L Q F+T T D Sbjct: 295 LKLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGIESLNTD 353 Query: 357 SLNETAKFMRISNHQALC 374 L A + + Q Sbjct: 354 KLKG-ASIFHVHDGQVGS 370 >gi|319940193|ref|ZP_08014546.1| DNA replication and repair protein recF [Streptococcus anginosus 1_2_62CV] gi|319810664|gb|EFW06994.1| DNA replication and repair protein recF [Streptococcus anginosus 1_2_62CV] Length = 365 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 92/367 (25%), Positives = 155/367 (42%), Gaps = 10/367 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L I FRNY + + F + IF+G N GKTNILEAI FL+ R R S D+ Sbjct: 1 MWLKNLQIQHFRNYEATEIDFHSGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F ++ G +I LE R ++N + + + ++ + Sbjct: 61 I-----YFSKDTLKISGQLVKQTGNISLEIDLTPKGRITKVNHLKQSKLSDYVGNMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPALRRKFIDIELGQIKPIYLSDLSHYHHVLKQRNTYLKTAKTMDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ E G ++ R+E + L + + + L++ S L Sbjct: 176 AVLDDQLVEFGCRVMQHRIEFLKKLEHFGQQKHLELSSHLENLTIKYCSSVPLSDS-NKL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + L R D + T +GPHR D+ D GS G+ + V++ + LA Sbjct: 235 KESFQIALKQSRSRDLFKKNTGVGPHRDDIAFYINDMN--ANFGSQGQHRSVVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ T PILLLD++ + LD ++ L ++ Q FMT T S+ K Sbjct: 293 IELMETVTKEKPILLLDDVMSELDNSRQLNLLETISQ-NIQTFMTTTTLEHLQSMPSNIK 351 Query: 364 FMRISNH 370 I Sbjct: 352 IFSIHEG 358 >gi|322381375|ref|ZP_08055378.1| recF-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154951|gb|EFX47222.1| recF-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 383 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 161/375 (42%), Gaps = 17/375 (4%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 N + ++ L + +RNY + LV D IFVG N GKTN+LE+I L+ + R Sbjct: 5 NALFLQRLTLHHYRNYQHVELVTDRNVNIFVGPNAQGKTNLLESIYVLALTKSHRTHHDK 64 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ + S A ++G S L+ + +IN + + + + L + Sbjct: 65 ELIQWEGES-----ALLQGDVEKKYGSYSLDLAISSKGKKAKINGLEQKKLSQFIGALNV 119 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS- 181 P I G RRRFLD + + P + + +++++ RN +L + + S Sbjct: 120 VLFAPEDLEIIKGNPGIRRRFLDMEIGQVYPGYLYDLSQYQKVLAQRNNMLKKAFPAPSA 179 Query: 182 ----WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 Q+A+ GVKI R I L + + +L++ Sbjct: 180 EHAAMLDIWNEQLAQFGVKIMKKRQNFIKKLQNWAEQIHDGITNGGEELTIRYQPSFAVQ 239 Query: 238 --QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + L E++ KL + + +L GPHR DL+ DK + +GS G+Q+ Sbjct: 240 DFEDETVLMEQFMIKLSQIKDQEIRRGVSLAGPHRDDLLFYINDKEV-QTYGSQGQQRTT 298 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKS 353 + + LA LI + G PILLLD++ + LDE ++ L + Q F+T T + Sbjct: 299 ALSLKLAEIELIHSEVGEYPILLLDDVLSELDEYRQTQLIQTFQKK-VQTFITTTGLESV 357 Query: 354 VFDSLNETAKFMRIS 368 D L E A R++ Sbjct: 358 HLDQL-EDASVFRVT 371 >gi|295108630|emb|CBL22583.1| DNA replication and repair protein RecF [Ruminococcus obeum A2-162] Length = 363 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 158/372 (42%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY +L+L FD IF GDN GKTNILE++ + R + ++ Sbjct: 1 MYIKSLELKNYRNYQNLQLDFDKGTNIFYGDNAQGKTNILESVYLCGTTKSHRGSKDKEI 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S R + D+ ++ + + IN + I+ EL + + Sbjct: 61 IRFGEEESHIRMMIRKDEFSYKIDMHLR-----KNKAKGVAINGLPIKKARELFGIVNLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + +D + + + ++ RNRLL + Y + S Sbjct: 116 FFSPEDLNIIKNGPGERRRFMDLELCQLDQIYLTDLAGYNHIVNQRNRLLKDLYMNPSLK 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + QM + G KI R + + L+ +I + L + Sbjct: 176 ETLDIWDMQMLQYGTKIINKRKDFVRDLNQVIQDIHHNLTGGIEHLEVVY--------EP 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E++ L R+ D + T GPHR DL + I +GS G+Q+ + + Sbjct: 228 STEAEDFENVLKKNRERDIRMKMTSAGPHRDDLSLVVNGIDIR-KYGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ PILLLD++ + LD +++ L + DI + I TG D V + + Sbjct: 287 LSEIYLVKEKIKDTPILLLDDVLSELDSNRQTYLLDCIHDIQTLITCTGLDDFVSNQFHI 346 Query: 361 TAKFMRISNHQA 372 K R+ + Sbjct: 347 N-KVFRVIKGEV 357 >gi|172056049|ref|YP_001812509.1| DNA replication and repair protein RecF [Exiguobacterium sibiricum 255-15] gi|226737799|sp|B1YGB5|RECF_EXIS2 RecName: Full=DNA replication and repair protein recF gi|171988570|gb|ACB59492.1| DNA replication and repair protein RecF [Exiguobacterium sibiricum 255-15] Length = 384 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 155/375 (41%), Gaps = 13/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + +S +RNY SL L F + + +G+N GKTN+LEAI L+ + R ++ Sbjct: 1 MRLDSVRLSHYRNYESLELSFSEKTNVLIGENAQGKTNLLEAIYVLALAKSHRTTHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + ARVEG S E + ++N + R + + L I Sbjct: 61 IQWDAET-----ARVEGRIHKRRGSHSQEIAISSRGKKAKLNHLEQRRLSDYVGALNIVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P I G RRRFLD + + P + + + ++++ RN LL + D + Sbjct: 116 FAPEDLHIVKGSPQIRRRFLDMEIGQVSPVYLHELSQYLKVLKQRNALLKQLSMKGGDET 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--S 239 + + QM L VKI R I L + + +L L D + Sbjct: 176 FLDVLTEQMITLAVKIVQRRHHFIAQLEKWARPIHEGISRGQEQLVLIYRSDTFSNDLLD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + Y +K + + TL GPHR D ++ + + +GS G+Q+ + + Sbjct: 236 VEGMTASYMQKFGKMKTNEIRRGVTLFGPHRDDFEMEVNGRNV-QTYGSQGQQRTAALSL 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI G P+LLLD++ + LD+ ++ L + Q +T T Sbjct: 295 KLAEIELIHEEVGEYPLLLLDDVLSELDDHRQTHLLDTMQQK-VQTILTTTSVDGIAHET 353 Query: 359 NETAKFMRISNHQAL 373 + AK + + Sbjct: 354 IKQAKLFHVKQGAVI 368 >gi|289551837|ref|YP_003472741.1| DNA recombination and repair protein RecF [Staphylococcus lugdunensis HKU09-01] gi|289181368|gb|ADC88613.1| DNA recombination and repair protein RecF [Staphylococcus lugdunensis HKU09-01] Length = 371 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 160/377 (42%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY ++ L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFKAE-----YAKIEGELNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQYGHKTDV 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + + Q A+ + + + R I+ L +L LSL K Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIHDLEALAQPIHAGITNDKEALSLNYLPSIKLSDTS 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 Q L E L D + L GPHR DL + +GS G+Q+ + Sbjct: 236 QDESILLSEVITFLNDNLDREIDRGVCLFGPHRDDLGFNVNSMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + A+ RI + + Sbjct: 354 DIMNNARLYRIKQGEII 370 >gi|116617178|ref|YP_817549.1| DNA replication and repair protein RecF [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272621|sp|Q040E6|RECF_LEUMM RecName: Full=DNA replication and repair protein recF gi|116096025|gb|ABJ61176.1| DNA replication and repair protein RecF [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 374 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 91/373 (24%), Positives = 160/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + +RNY+ L L F + +F+G+N GKTN+LE+I L+ R R +S D+ Sbjct: 1 MELESLKLDHYRNYSDLTLEFSSGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + A + G + L + ++N + + L + Sbjct: 61 VQWQAKE-----ATISGRVKRSISETPLSLHFSNKGKKARVNHLEQSKLSHYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P + G RRRF+D ++P + ++R+++ RN L D+ Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYKRILKERNAYLKRLQLKQTTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+ ++G +I IAR E +N L + + +KL +D D Sbjct: 176 VFLDVLSEQLVDVGSQILIARQEFLNKLELAAQPIHAEISDQREALKLRYMSSVDFASDA 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S +K +A L R + M T++GPHR +L D + I GS G+Q+ + Sbjct: 236 SLEEVKSVFADALSRQRSREIMQGSTMVGPHRDELQFDVNGNNVAI-FGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L+ TG P+LLLD++ + LD ++ L + D Q F+T S Sbjct: 295 IKLAEIDLMQQETGEYPVLLLDDVLSELDASRQTHLLLAIQDK-VQTFITAPTLSDIARQ 353 Query: 358 LNETAKFMRISNH 370 L + + Sbjct: 354 LIRKPRVFHVKQG 366 >gi|314934957|ref|ZP_07842316.1| DNA replication and repair protein RecF [Staphylococcus caprae C87] gi|313652887|gb|EFS16650.1| DNA replication and repair protein RecF [Staphylococcus caprae C87] Length = 371 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 90/377 (23%), Positives = 162/377 (42%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLENYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFKAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSKLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD---GKFD 237 + + Q A+ +K+ + R I L L KL L ++ Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLGLKYLPSLKLSDYE 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + L EE + L D + + L GPHR DL + +GS G+Q+ + Sbjct: 236 KEESELLEEVIELLNDNLQREKERGVCLYGPHRDDLGFNVNGMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RIS + L Sbjct: 354 EIMNNAKLYRISQGELL 370 >gi|315659992|ref|ZP_07912850.1| recombination protein F [Staphylococcus lugdunensis M23590] gi|315494893|gb|EFU83230.1| recombination protein F [Staphylococcus lugdunensis M23590] Length = 371 Score = 338 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY ++ L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFKAE-----YAKIEGELNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RRRF+D + I + + ++R+++ +N L + + D Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQYGHKTDV 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + + Q A+ + + + R I+ L +L LSL K Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIHDLEALAQPIHAGITNDKEVLSLNYLPSIKLSDTS 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 Q L E L D + L GPHR DL + +GS G+Q+ + Sbjct: 236 QDESILLSEVITFLNDNLDREIDRGVCLFGPHRDDLGFNVNSMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + A+ RI+ + + Sbjct: 354 DIMNNARLYRINQGEII 370 >gi|295694691|ref|YP_003587929.1| DNA replication and repair protein RecF [Bacillus tusciae DSM 2912] gi|295410293|gb|ADG04785.1| DNA replication and repair protein RecF [Bacillus tusciae DSM 2912] Length = 370 Score = 338 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 160/373 (42%), Gaps = 13/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + FRNY L+L A +F+G+NG GKTN+LEAI L+ + R A+ Sbjct: 1 MRLESLRLLHFRNYPHLQLDTRAPVNVFIGENGQGKTNVLEAIDILALTKSHRTHRLAEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G FA +EG S +L S + + + + + + L + Sbjct: 61 IQWGEQ-----FALIEGRVQRNTGSSELSVTLTTSGKRAAVAGIERQRISDYVGMLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P ++ G RRRFLD + I P + R + + R + RN+LL + Sbjct: 116 FTPEDLQLIKGSPQVRRRFLDMEIGQISPLYLRDLQQYVRALSQRNQLLKSANHNPTERI 175 Query: 181 -SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q+A G +I + R + + L E + + LSL+ +Q+ Sbjct: 176 TDTLDIWDDQLARHGSRIILRRAQFVRTLERHAREIHSRVSGDREVLSLSYAK-VSPEQT 234 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + + Y +L R +D T +GPHR DL++ D+ A S G+Q+ + + Sbjct: 235 PEQVFQMYLHELRARRSLDLARGVTSVGPHRDDLVILLNDRE-AAAFASQGQQRTAALSL 293 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA LI G P+LLLD++ + LD ++ L + Q F+T T SL Sbjct: 294 KLAEIELIREEVGEYPVLLLDDVLSELDPVRQVHLVSAM-GAQVQTFLTTTHLEGLGSLA 352 Query: 360 ETAKFMRISNHQA 372 + + Q Sbjct: 353 GALQVFVVEAGQI 365 >gi|315273169|ref|ZP_07869215.1| DNA replication and repair protein RecF [Listeria marthii FSL S4-120] gi|313616205|gb|EFR89284.1| DNA replication and repair protein RecF [Listeria marthii FSL S4-120] Length = 370 Score = 338 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 159/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG S+ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + + Sbjct: 176 MLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + + Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHET 353 Query: 359 NETAKFMRISNHQA 372 + A + Sbjct: 354 LKQATTFYVEKGTV 367 >gi|299541762|ref|ZP_07052085.1| hypothetical protein BFZC1_22469 [Lysinibacillus fusiformis ZC1] gi|298725500|gb|EFI66141.1| hypothetical protein BFZC1_22469 [Lysinibacillus fusiformis ZC1] Length = 371 Score = 338 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 157/375 (41%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + ++ +RNY +L L F + +F+G+N GKTN++E+I L+ + R + ++ Sbjct: 1 MYIEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S + ++EG + +E + + +IN + + + + Sbjct: 61 IRWDSD-----YGKIEGAVKKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D + I P + ++ F+++++ RN L + + Sbjct: 116 FAPEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMNQGKSMSND 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 Q +I R + ++ L + L + + + Sbjct: 176 VMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIHAGISQGKETLVIKYRTVAGIEKEH 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S ++ +KL + R+ + TL+GPHR DL + +GS G+Q+ + Sbjct: 236 STSEIENTLHQKLIEAREREFDRGVTLVGPHRDDLQFLVNGYDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357 + LA LI T PILLLD++ + LD+ +++ L + Q F+T T + + Sbjct: 295 LKLAEIELIKQETKETPILLLDDVLSELDDYRQSHLLNTIQG-EVQTFVTTTSVEGIHHE 353 Query: 358 LNETAKFMRISNHQA 372 E A+ + Sbjct: 354 TMEQAQLFHVKQGAI 368 >gi|331083522|ref|ZP_08332634.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 6_1_63FAA] gi|330404215|gb|EGG83763.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 6_1_63FAA] Length = 361 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 90/375 (24%), Positives = 158/375 (42%), Gaps = 21/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY SL L FD IF GDN GKTNILEA S + R + ++ Sbjct: 1 MYIESIELKNYRNYNSLALEFDKGTNIFYGDNAQGKTNILEAAYLCSTTKSHRGSKDKEM 60 Query: 65 TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + F +G+ D+ +K + + I+ + IR EL L I Sbjct: 61 IKFDADEAHIRMFVNKDGISRKIDMHLK-----KSKPKGIAIDGIPIRKASELFGLLNIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + +D + + + ++ RN+LL + F S Sbjct: 116 FFSPEDLNIIKNGPGERRRFMDLELCQLDKLYLSNLSSYNHVLNQRNKLLKDIAFQESLK 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q + G +I R I+ ++ ++ + K+ L Sbjct: 176 DTLEIWDEQFVQYGKEIIETRRRFIDEINGIMEKIHSSITGNREKIELVY--------EP 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E + ++L R+ D ++T +GPHR D V I +GS G+Q+ + + Sbjct: 228 SVSDENFYQELSKNREKDCRFKQTSVGPHRDDFSVKVNGIDIR-RYGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359 L+ ++ P+LLLD++ + LD +++N L ++ Q +T T F D Sbjct: 287 LSEIYMVKKVIKDMPVLLLDDVLSELDSNRQNYLLNSISH--VQTMITCTGLDDFIDKRF 344 Query: 360 ETAKFMRISNHQALC 374 K ++ + C Sbjct: 345 HINKIFKVIDGDVFC 359 >gi|254930864|ref|ZP_05264223.1| recombination protein F [Listeria monocytogenes HPB2262] gi|293582409|gb|EFF94441.1| recombination protein F [Listeria monocytogenes HPB2262] gi|328476148|gb|EGF46854.1| recombination protein F [Listeria monocytogenes 220] gi|332310338|gb|EGJ23433.1| DNA replication and repair protein recF [Listeria monocytogenes str. Scott A] Length = 370 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG S+ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + + Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASITLNGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + I Sbjct: 236 PEVWKADLLQKIESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHET 353 Query: 359 NETAKFMRISNHQA 372 + A + Sbjct: 354 LKQATTFYVEKGTV 367 >gi|224498302|ref|ZP_03666651.1| recombination protein F [Listeria monocytogenes Finland 1988] Length = 370 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG S+ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIAKHGQSVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + + Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASITLNGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + I Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHET 353 Query: 359 NETAKFMRISNHQA 372 + A + Sbjct: 354 LKQATTFYVEKGTV 367 >gi|254830703|ref|ZP_05235358.1| recombination protein F [Listeria monocytogenes 10403S] gi|290892042|ref|ZP_06555039.1| recombination protein F [Listeria monocytogenes FSL J2-071] gi|290558636|gb|EFD92153.1| recombination protein F [Listeria monocytogenes FSL J2-071] Length = 370 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG S+ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + + Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + I Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHET 353 Query: 359 NETAKFMRISNHQA 372 + A + Sbjct: 354 LKQATTFYVEKGTV 367 >gi|296330040|ref|ZP_06872524.1| recombination protein F [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672702|ref|YP_003864373.1| recombination protein F [Bacillus subtilis subsp. spizizenii str. W23] gi|296153079|gb|EFG93944.1| recombination protein F [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410945|gb|ADM36063.1| recombination protein F [Bacillus subtilis subsp. spizizenii str. W23] Length = 370 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 161/373 (43%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L ++ +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ Sbjct: 1 MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + +I ++ + + ++N + + + + L Sbjct: 61 IRWDKD-----YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFLD + + P + + +++++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238 + + Q+ E+ K+ + R++ L + +L+L L+ + Sbjct: 176 TMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPK 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + Y + R+ + TL GPHR D++ + + +GS G+Q+ + Sbjct: 236 DLSKIGDSYQEAFSKLREKEIERGITLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNH 370 A R+ N Sbjct: 354 TLRQAGMFRVQNG 366 >gi|16802053|ref|NP_463538.1| recombination protein F [Listeria monocytogenes EGD-e] gi|46906229|ref|YP_012618.1| recombination protein F [Listeria monocytogenes serotype 4b str. F2365] gi|47097287|ref|ZP_00234845.1| DNA replication and repair protein RecF [Listeria monocytogenes str. 1/2a F6854] gi|224503072|ref|ZP_03671379.1| recombination protein F [Listeria monocytogenes FSL R2-561] gi|226222644|ref|YP_002756751.1| RecF protein [Listeria monocytogenes Clip81459] gi|254824775|ref|ZP_05229776.1| recombination protein F [Listeria monocytogenes FSL J1-194] gi|254827429|ref|ZP_05232116.1| recombination protein F [Listeria monocytogenes FSL N3-165] gi|254851837|ref|ZP_05241185.1| recombination protein F [Listeria monocytogenes FSL R2-503] gi|254899681|ref|ZP_05259605.1| recombination protein F [Listeria monocytogenes J0161] gi|254913116|ref|ZP_05263128.1| DNA replication and repair protein RecF [Listeria monocytogenes J2818] gi|254937497|ref|ZP_05269194.1| recombination protein F [Listeria monocytogenes F6900] gi|255520065|ref|ZP_05387302.1| recombination protein F [Listeria monocytogenes FSL J1-175] gi|284803261|ref|YP_003415126.1| recombination protein F [Listeria monocytogenes 08-5578] gi|284996402|ref|YP_003418170.1| recombination protein F [Listeria monocytogenes 08-5923] gi|300763381|ref|ZP_07073379.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL N1-017] gi|20978583|sp|Q8YAV8|RECF_LISMO RecName: Full=DNA replication and repair protein recF gi|51316269|sp|Q725G6|RECF_LISMF RecName: Full=DNA replication and repair protein recF gi|259563663|sp|C1L302|RECF_LISMC RecName: Full=DNA replication and repair protein recF gi|16409364|emb|CAC98220.1| RecF protein [Listeria monocytogenes EGD-e] gi|46879493|gb|AAT02795.1| DNA replication and repair protein RecF [Listeria monocytogenes serotype 4b str. F2365] gi|47014332|gb|EAL05307.1| DNA replication and repair protein RecF [Listeria monocytogenes str. 1/2a F6854] gi|225875106|emb|CAS03794.1| RecF protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599807|gb|EEW13132.1| recombination protein F [Listeria monocytogenes FSL N3-165] gi|258605129|gb|EEW17737.1| recombination protein F [Listeria monocytogenes FSL R2-503] gi|258610099|gb|EEW22707.1| recombination protein F [Listeria monocytogenes F6900] gi|284058823|gb|ADB69764.1| recombination protein F [Listeria monocytogenes 08-5578] gi|284061869|gb|ADB72808.1| recombination protein F [Listeria monocytogenes 08-5923] gi|293591118|gb|EFF99452.1| DNA replication and repair protein RecF [Listeria monocytogenes J2818] gi|293594014|gb|EFG01775.1| recombination protein F [Listeria monocytogenes FSL J1-194] gi|300515658|gb|EFK42707.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL N1-017] Length = 370 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG S+ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + + Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASITLNGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + I Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHET 353 Query: 359 NETAKFMRISNHQA 372 + A + Sbjct: 354 LKQATTFYVEKGTV 367 >gi|217965930|ref|YP_002351608.1| DNA replication and repair protein RecF [Listeria monocytogenes HCC23] gi|254790481|sp|B8DAQ5|RECF_LISMH RecName: Full=DNA replication and repair protein recF gi|217335200|gb|ACK40994.1| DNA replication and repair protein RecF [Listeria monocytogenes HCC23] gi|307569528|emb|CAR82707.1| DNA replication and repair protein [Listeria monocytogenes L99] Length = 370 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG S+ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + + Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + I Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHGT 353 Query: 359 NETAKFMRISNHQA 372 + A + Sbjct: 354 LKQATTFYVEKGTV 367 >gi|313625797|gb|EFR95414.1| DNA replication and repair protein RecF [Listeria innocua FSL J1-023] Length = 370 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 159/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG ++ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + + Sbjct: 176 MLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + + Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D + Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHNT 353 Query: 359 NETAKFMRISNHQA 372 A + Sbjct: 354 LNQATTFYVEKGTV 367 >gi|300172306|ref|YP_003771471.1| DNA replication and repair protein RecF [Leuconostoc gasicomitatum LMG 18811] gi|299886684|emb|CBL90652.1| DNA replication and repair protein RecF [Leuconostoc gasicomitatum LMG 18811] Length = 375 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 159/376 (42%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + +RNY L L F +F+G+N GKTN+LE+I L+ R R +S D+ Sbjct: 1 MELQSLRLVNYRNYTDLTLNFSDGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R A + G + L + ++N + + + L + Sbjct: 61 IRWQEKE-----ATISGRVKKSISDTPLSLHFSNKGKKARVNHLEQSKLSQYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D ++P + + R+++ RN L D+ Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKERNAYLKRLQMKQTTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + + Q+ ++G ++ +AR + L + + L+L LD + + Sbjct: 176 IFLDVLTEQLVDIGSQVLLARQTFLERLEVAAQPIHAEISNKRETLTLRYQTSLDFEKET 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +K + + L + + M TL+GPHR D+ D + + GS G+Q+ + Sbjct: 236 DLATIKLVFEQTLKKQQSREIMQGSTLVGPHRDDIQFIVNDNDVAV-FGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDS 357 I LA L+ TG PILLLD++ + LD +++ L + D Q F+T T V Sbjct: 295 IKLAEIDLMQQETGEYPILLLDDVLSELDANRQTHLLLAIQDK-VQTFITAPTLSDVARQ 353 Query: 358 LNETAKFMRISNHQAL 373 L + + + + Sbjct: 354 LIHAPRVFHVKQGEIV 369 >gi|308066842|ref|YP_003868447.1| DNA repair protein RecF [Paenibacillus polymyxa E681] gi|305856121|gb|ADM67909.1| DNA replication and repair protein RecF [Paenibacillus polymyxa E681] Length = 371 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 154/376 (40%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + ++RNY L L + +G N GKTN++EAI L+ + R + ++ Sbjct: 1 MFVNNIVLQQYRNYEQLELNEFGPVNLLIGQNAQGKTNLVEAIFVLALTKSHRTSRDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ S A V+ G + + L T+ ++ +IN + R + + L + Sbjct: 61 ISFGATSTH-LAADVDKKYGKIRLDLALSTQGKKA----KINGLEQRKLSDFIGSLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P I G RRRFLD + + P + + +++++ RN LL + + Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVAPGYLYHLQQYQKVLVQRNNLLKQAWGKDMASV 175 Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL--DGKFD 237 Q+ E GVKI R + I L + +L LT + Sbjct: 176 QLMLEVWNEQLVEHGVKIVKKRKQFITKLQKWAQAIHEGIAGGTEELKLTYVPSFSEPEE 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + L E + KL R+ + TL GPHR DL + + +GS G+Q+ + Sbjct: 236 EDEAVLLERFMIKLSQMREQEIRRGMTLAGPHRDDLAFAINGREV-HTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA LI G P+LLLD++ + LD ++ L Q F+T T ++ Sbjct: 295 SLKLAEIELIHEEIGEYPVLLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGVETLNA 353 Query: 358 LN-ETAKFMRISNHQA 372 + A + + Sbjct: 354 ERLKDANIYHVHDGHV 369 >gi|116491822|ref|YP_803557.1| recombination protein F [Pediococcus pentosaceus ATCC 25745] gi|122266714|sp|Q03I57|RECF_PEDPA RecName: Full=DNA replication and repair protein recF gi|116101972|gb|ABJ67115.1| DNA replication and repair protein RecF [Pediococcus pentosaceus ATCC 25745] Length = 374 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 158/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRNYA L + F + + +G+N GKTN+LE+I FL+ R R S D+ Sbjct: 1 MYLKTLELHNFRNYADLVVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTNSDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S+ + ARV G LE + ++N + + + L + Sbjct: 61 I-----SWKTKAARVSGSVQKEHTVTPLEINLSSKGKNAKVNHLEQSRLSQYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P I G RR+F+D + ++ + +++ RN+ + + F D Sbjct: 116 FAPEDLSIVKGSPAVRRKFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYIKQLQFNPKGDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q+A G +I R++ + L E ++ + KLS DQ Sbjct: 176 VYLDVLSDQLAAHGAEIIFQRIQFLKKLEKWSQEVHKEISQGKEKLSFQYVSPISSDQAD 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + R+ + +TL+GPH D+ DK ++ GS G+Q+ + Sbjct: 236 TTEKIYAALQALFQKQREKELQQGKTLVGPHLDDVRFMVNDKNVS-TFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDS 357 + LA L+ TG P+LLLD++ + LD+ ++ L + + Q F+T T S V Sbjct: 295 VKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQNK-VQTFITTTSLSGVAQQ 353 Query: 358 LNETAKFMRISNH 370 L I + Sbjct: 354 LINEPHVFNIDHG 366 >gi|261403880|ref|YP_003240121.1| DNA replication and repair protein RecF [Paenibacillus sp. Y412MC10] gi|261280343|gb|ACX62314.1| DNA replication and repair protein RecF [Paenibacillus sp. Y412MC10] Length = 370 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 156/378 (41%), Gaps = 16/378 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ +RNY L+L + +G N GKTN++EA+ L+ + R + ++ Sbjct: 1 MFVKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSKDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + A + +++LE + + +IN + R + + L + Sbjct: 61 I-----GFEQSSAHISAEIDRKYGTLRLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRFLD + + P + + +++++ RN LL + G + Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSTEQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQ 238 + +Q+AE GVKI R + I L Q LSL ++ Sbjct: 176 AMLEIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAEEE 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L E + KL ++ + TL GPHR DL K + +GS G+Q+ + Sbjct: 236 DEAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAFYINGKEV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--D 356 + LA LI G P+LLLD++ + LD ++ L Q F+T T D Sbjct: 295 LKLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGIESLNTD 353 Query: 357 SLNETAKFMRISNHQALC 374 L A + + Q Sbjct: 354 KLKG-ASIFHVHDGQVGS 370 >gi|321313671|ref|YP_004205958.1| recombination protein F [Bacillus subtilis BSn5] gi|320019945|gb|ADV94931.1| recombination protein F [Bacillus subtilis BSn5] Length = 370 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 83/373 (22%), Positives = 160/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L ++ +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ Sbjct: 1 MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + +I ++ + + ++N + + + + L Sbjct: 61 IRWDKD-----YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFLD + + P + + +++++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238 + + Q+ E+ K+ + R++ L + +L+L LD Sbjct: 176 TMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPL 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + Y + R+ + TL GPHR D++ + + +GS G+Q+ + Sbjct: 236 ELSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNH 370 A R+ N Sbjct: 354 TLRQAGMFRVQNG 366 >gi|16077072|ref|NP_387885.1| recombination protein F [Bacillus subtilis subsp. subtilis str. 168] gi|221307813|ref|ZP_03589660.1| recombination protein F [Bacillus subtilis subsp. subtilis str. 168] gi|221312135|ref|ZP_03593940.1| recombination protein F [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317068|ref|ZP_03598362.1| recombination protein F [Bacillus subtilis subsp. subtilis str. JH642] gi|221321331|ref|ZP_03602625.1| recombination protein F [Bacillus subtilis subsp. subtilis str. SMY] gi|132246|sp|P05651|RECF_BACSU RecName: Full=DNA replication and repair protein recF gi|467394|dbj|BAA05240.1| recombination protein [Bacillus subtilis] gi|2632271|emb|CAB11780.1| DNA repair and genetic recombination factor [Bacillus subtilis subsp. subtilis str. 168] Length = 370 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 83/373 (22%), Positives = 160/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L ++ +RNY L F+ + + +G+N GKTN++EAI LS + R ++ ++ Sbjct: 1 MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +A++EG + +I ++ + + ++N + + + + L Sbjct: 61 IRWDKD-----YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFLD + + P + + +++++ RN L D Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238 + + Q+ E+ K+ + R++ L + +L+L LD Sbjct: 176 TMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPL 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + Y + R+ + TL GPHR D++ + + +GS G+Q+ + Sbjct: 236 DLSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI G PILLLD++ + LD+ +++ L + Q F+T T D Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353 Query: 358 LNETAKFMRISNH 370 A R+ N Sbjct: 354 TLRQAGMFRVQNG 366 >gi|315221608|ref|ZP_07863528.1| recombination protein F [Streptococcus anginosus F0211] gi|315189442|gb|EFU23137.1| recombination protein F [Streptococcus anginosus F0211] Length = 365 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 91/367 (24%), Positives = 154/367 (41%), Gaps = 10/367 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L I FRNY + + F + IF+G N GKTNILEAI FL+ R R S D+ Sbjct: 1 MWLKKLQIQHFRNYEATEIDFHSGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F ++ G I LE R ++N + + + ++ + Sbjct: 61 I-----YFSKDTLKISGQLVKQTGKISLEIDLTPKGRITKVNHLKQSKLSDYVGNMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPALRRKFIDIELGQIKPIYLSDLSHYHHVLKQRNTYLKTAKTIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ E G ++ R+E + L + + + L++ S L Sbjct: 176 AVLDDQLVEFGCRVMQHRIEFLKKLEHFGQQKHLELSSHLENLTIKYCSSVPLSDS-NKL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + L R D + T +GPHR D+ D GS G+ + V++ + LA Sbjct: 235 KESFQIALKQSRSRDLFKKNTGVGPHRDDIAFCINDMN--ANFGSQGQHRSVVLSLKLAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 L+ T PILLLD++ + LD ++ L ++ Q FMT T ++ K Sbjct: 293 IELMETVTKEKPILLLDDVMSELDNSRQLNLLETISQ-NIQTFMTTTTLEHLQNVPSNIK 351 Query: 364 FMRISNH 370 I Sbjct: 352 IFSIHEG 358 >gi|329925052|ref|ZP_08279996.1| DNA replication and repair protein RecF [Paenibacillus sp. HGF5] gi|328940171|gb|EGG36503.1| DNA replication and repair protein RecF [Paenibacillus sp. HGF5] Length = 370 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 156/378 (41%), Gaps = 16/378 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ +RNY L+L + +G N GKTN++EA+ L+ + R + ++ Sbjct: 1 MFVKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSKDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + A + +++LE + + +IN + R + + L + Sbjct: 61 I-----GFEQSSAHISAEIDRKYGTLRLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRFLD + + P + + +++++ RN LL + G + Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSAEQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQ 238 + +Q+AE GVKI R + I L Q LSL ++ Sbjct: 176 AMLEIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAEEE 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L E + KL ++ + TL GPHR DL K + +GS G+Q+ + Sbjct: 236 DEAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAFYINGKEV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--D 356 + LA LI G P+LLLD++ + LD ++ L Q F+T T D Sbjct: 295 LKLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGIESLNTD 353 Query: 357 SLNETAKFMRISNHQALC 374 L A + + Q Sbjct: 354 KLKG-ASIFHVHDGQVGS 370 >gi|170016362|ref|YP_001727281.1| recombinational DNA repair ATPase (RecF pathway) [Leuconostoc citreum KM20] gi|226737812|sp|B1MW32|RECF_LEUCK RecName: Full=DNA replication and repair protein recF gi|169803219|gb|ACA81837.1| Recombinational DNA repair ATPase (RecF pathway) [Leuconostoc citreum KM20] Length = 378 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 158/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNYA+L L F +F+G+N GKTN+LE+I L+ R R +S D+ Sbjct: 1 MELTSLKLVNYRNYANLELDFSPGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G L + ++N + + + L + Sbjct: 61 INWTAKE-----TTISGRIKKNISETPLSLHFSSKGKKARVNHLEQSKLSQYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P + G RRRF+D ++P + + + R+++ RN L D+ Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNITQYRRILKDRNAYLKRLQLKQTKDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q+ +G ++ +AR + L + + + +L+L F++ Sbjct: 176 VFLDVLTDQLVSVGAEVILARQLFVRRLQAAAQPIHAEVSNQREQLTLVYQTSIDFEEHA 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +K +A L R + M T++GPHR DL + + + GS G+Q+ + Sbjct: 236 DLEQIKATFAATLNRQRTREVMQGSTVVGPHRDDLQFIVNENDVAV-FGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L++ TG PILLLD++ + LD ++ L + D Q F+T S Sbjct: 295 IKLAEIDLMAQETGEYPILLLDDVLSELDASRQTHLLLAIQDK-VQTFITAPSLSDVARQ 353 Query: 358 LNETAKFMRISNHQA 372 L T K + + Sbjct: 354 LIHTPKVFHVKQGEI 368 >gi|116871427|ref|YP_848208.1| recombination protein F [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460552|sp|A0AEJ1|RECF_LISW6 RecName: Full=DNA replication and repair protein recF gi|116740305|emb|CAK19423.1| DNA replication and repair protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 370 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 159/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG ++ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + + Sbjct: 176 MLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TL+GPHR D + + + GS G+Q+ + + Sbjct: 236 PDTWKADLLQKMESIKQREIDRGVTLVGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHDT 353 Query: 359 NETAKFMRISNHQA 372 + A + Sbjct: 354 LKQATTFYVEKGTV 367 >gi|227432903|ref|ZP_03914847.1| recombination protein F [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351336|gb|EEJ41618.1| recombination protein F [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 374 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 160/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + +RNY+ L L F + +F+G+N GKTN+LE+I L+ R R +S D+ Sbjct: 1 MELESLKLDHYRNYSDLTLEFSSGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + A + G + L + ++N + + L + Sbjct: 61 VQWQAKE-----ATISGRVKRSISETPLSLHFSNKGKKARVNHLEQSKLSHYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P + G RRRF+D ++P + ++++++ RN L D+ Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYKQILKERNAYLKRLQLKQTTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+ ++G +I IAR E +N L + + +KL +D D Sbjct: 176 VFLDVLSEQLVDVGSQILIARQEFLNKLELAAQPIHAEISNQREALKLRYMSSVDFASDA 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S +K +A L R + M T++GPHR +L D + I GS G+Q+ + Sbjct: 236 SLEEVKSVFADALSRQRSREIMQGSTMVGPHRDELQFDVNGNNVAI-FGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 I LA L+ TG P+LLLD++ + LD ++ L + D Q F+T S Sbjct: 295 IKLAEIDLMQQETGEYPVLLLDDVLSELDASRQTHLLLAIQDK-VQTFITAPTLSDIARQ 353 Query: 358 LNETAKFMRISNH 370 L + + Sbjct: 354 LIRKPRVFHVKQG 366 >gi|256851677|ref|ZP_05557065.1| recombination protein F [Lactobacillus jensenii 27-2-CHN] gi|260661606|ref|ZP_05862518.1| recombination protein F [Lactobacillus jensenii 115-3-CHN] gi|282934239|ref|ZP_06339516.1| DNA replication and repair protein RecF [Lactobacillus jensenii 208-1] gi|297205286|ref|ZP_06922682.1| recombination protein F [Lactobacillus jensenii JV-V16] gi|256615635|gb|EEU20824.1| recombination protein F [Lactobacillus jensenii 27-2-CHN] gi|260547663|gb|EEX23641.1| recombination protein F [Lactobacillus jensenii 115-3-CHN] gi|281301713|gb|EFA93980.1| DNA replication and repair protein RecF [Lactobacillus jensenii 208-1] gi|297149864|gb|EFH30161.1| recombination protein F [Lactobacillus jensenii JV-V16] Length = 374 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 154/374 (41%), Gaps = 15/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + +RN+ L F IF+G N GKTN+LEA+ FL+ R R S ++ Sbjct: 1 MYLKQLKLQNWRNFEELETDFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + + G + + L+ R + + IN + + L Sbjct: 61 IRFGQKAAI-----LSGHVVKSQVETDLQVRINTKGKKAWINRIEQSKLSRYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+P + + ++++ +N L + D Sbjct: 116 FSPEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A L +I R++ + LS E + +L + Sbjct: 176 VFLEVLSDQLAGLAAEIISRRLKYLAYLSEYAKEAYAAISNEKERLEVVYNPSVTLTSGQ 235 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + + Y + L + + TL GPHR DL DK + S G+Q+ + + Sbjct: 236 TSSESIYHEVLACFKKNEAGEIRTGTTLAGPHRDDLQF-LLDKKDAHLYASQGQQRTIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +LI TG P LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SLKLAEIQLIHQITGEYPTLLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNH 370 + +T K R+ Sbjct: 354 EIVKTPKIFRLKAG 367 >gi|254472181|ref|ZP_05085581.1| DNA replication and repair protein [Pseudovibrio sp. JE062] gi|211958464|gb|EEA93664.1| DNA replication and repair protein [Pseudovibrio sp. JE062] Length = 376 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 150/370 (40%), Positives = 223/370 (60%), Gaps = 5/370 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FRNY++ + +++ FVGDNG GKTNILEAISFLS GRG RRA+ D+ Sbjct: 7 VALSRLALTDFRNYSAASVELNSRMIAFVGDNGAGKTNILEAISFLSAGRGLRRATLGDI 66 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R ++ A ++G G I L + R ++I+ R + L ++LR+ W Sbjct: 67 ARADGAGGWAVSAVLDGEYGETRIGTGLTAGEP--GRRVRIDGEEARSSEALLEYLRVLW 124 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVPSMD +F+G + +RR+FLDR+V +++P H R + FE+ +R RNRLL+EG + Sbjct: 125 LVPSMDGLFTGSASDRRKFLDRLVLSLNPSHGRMVASFEKALRQRNRLLSEGGT-PEFLD 183 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTG-FLDGKFDQSFCA 242 +IEAQ+AELG + +AR E ++ L+ + Q FP ++ L G F S Sbjct: 184 AIEAQVAELGTAVALARSETVSLLAKTLETQKQLGLPFPSAEIHLQGAFETATIGMSASD 243 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++ Y + L +GR D + RTL GPHRSDL V + +K + A STGEQK +L+G+ LA Sbjct: 244 REDCYRELLVEGRFRDRAAGRTLDGPHRSDLYVVHSEKQMPAAQASTGEQKALLIGLVLA 303 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L S+ +G PILLLDE++AHLD +R ALF + +G Q+FMTGTD+++F L A Sbjct: 304 HADLTSSISGMTPILLLDEVAAHLDPGRREALFTRLEVLGGQVFMTGTDQNLFKDLPSAA 363 Query: 363 KFMRISNHQA 372 + + Sbjct: 364 QIFEVEGGGI 373 >gi|81427620|ref|YP_394617.1| recombination protein F [Lactobacillus sakei subsp. sakei 23K] gi|97180789|sp|Q38ZS1|RECF_LACSS RecName: Full=DNA replication and repair protein recF gi|78609259|emb|CAI54306.1| DNA repair and recombination protein RecF (Recombinational DNA repair ATPase) [Lactobacillus sakei subsp. sakei 23K] Length = 375 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 165/377 (43%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L ++ +RNY S+ + F + +G+N GKTN+LEAI L+ R R + ++ Sbjct: 1 MYLSELQLNHYRNYESVDVHFSPDTNVLIGENAQGKTNLLEAIYVLALARSHRTNTDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FA++ G+ + LE + + ++N + + + L + Sbjct: 61 IQWHED-----FAKITGLVQRSAGKTPLELVLSQKGKKAKVNHLEQAKLSQYIGQLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P I G RR F+D + ++ + ++ +++ RN+ L D Sbjct: 116 FAPEDLNIVKGSPAVRRHFIDMEFGQMSSKYLYNISQYKSILKQRNQYLKQLQRRQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFD 237 + + Q+A G ++ +AR + + + + Q+ L+ + + D Sbjct: 176 VYLGVLSDQLAAYGAEVTVARRQFLQQMEKWAQKLHQEITKDREVLTFKYQSQIPEEQLD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 QS L +++ + + TLIGPHR D+ DK + A GS G+Q+ + Sbjct: 236 QSVEELYQQFQTLYEKQQIREVEQGTTLIGPHRDDVQFLVNDKDV-QAFGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356 + LA L+ TG PILLLD++ + LD+ ++ L + + Q F+T T ++V Sbjct: 295 SVKLAEIDLMKAQTGEYPILLLDDVLSELDDLRQTHLLKTFQNK-VQTFLTTTSLENVKK 353 Query: 357 SLNETAKFMRISNHQAL 373 + T + ++N + Sbjct: 354 EIIATPRVFTVTNGVVI 370 >gi|310639475|ref|YP_003944233.1| DNA replication and repair protein recf [Paenibacillus polymyxa SC2] gi|309244425|gb|ADO53992.1| DNA replication and repair protein recF [Paenibacillus polymyxa SC2] Length = 371 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 154/376 (40%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + ++RNY L L + +G N GKTN++EAI L+ + R + ++ Sbjct: 1 MFVNNIVLQQYRNYEQLELNEFGPVNLLIGQNAQGKTNLVEAIFVLALTKSHRTSRDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ S A V+ G + + L T+ ++ +IN + R + + L + Sbjct: 61 ISFGATSTH-LAADVDKKYGKIRLDLSLSTQGKKA----KINGLEQRKLSDFIGSLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P I G RRRFLD + + P + + +++++ RN LL + + Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVAPGYLYHLQQYQKVLVQRNNLLKQAWGKDMASV 175 Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFD 237 Q+ E GVKI R + I L + +L LT + Sbjct: 176 QLMLEVWNEQLVEHGVKIVKKRKQFITKLQKWAQAIHEGIAGGTEELKLTYVPSFGEPEE 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + L E + KL R+ + TL GPHR DL + + +GS G+Q+ + Sbjct: 236 EDEAVLLERFMIKLSQMREQEIRRGMTLAGPHRDDLAFAINGREV-HTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA LI G PILLLD++ + LD ++ L Q F+T T ++ Sbjct: 295 SLKLAEIELIHEEIGEYPILLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGIETLNA 353 Query: 358 LN-ETAKFMRISNHQA 372 + A + + Sbjct: 354 ERLKGAHIYHVHDGHV 369 >gi|304385858|ref|ZP_07368202.1| recombination protein F [Pediococcus acidilactici DSM 20284] gi|304328362|gb|EFL95584.1| recombination protein F [Pediococcus acidilactici DSM 20284] Length = 374 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 157/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRNYA L + F + + +G+N GKTN+LE+I FL+ R R ++ D+ Sbjct: 1 MYLKTLELHNFRNYADLSVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTSNDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + ARV G +E + ++N + + + L + Sbjct: 61 IGWKAKE-----ARVLGTIQKEHTQTPVEIDISSKGKNAKVNHIEQGRLSQYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P I G RRRF+D + ++ + +++ RN+ L + D Sbjct: 116 FAPEDLSIVKGSPAVRRRFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYLKQLQIDPKGDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q+A G +I R++ + L ++ + KL+ K D+ Sbjct: 176 VYLDVLSDQLAAYGAEIIFQRIQFLKKLEEWSQAVHEEISQGLEKLTFQYVSPLKKDETT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S + + L R+ + +TL+GPH D+ K ++ GS G+Q+ + Sbjct: 236 STETIYTALQELLKKHRQRELQQGKTLVGPHLDDVKFIVNGKNVS-TFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDS 357 + LA L+ TG P+LLLD++ + LD+ ++ L + + Q F+T T S V Sbjct: 295 VKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQNK-VQTFITTTSLSGVAQQ 353 Query: 358 LNETAKFMRISNH 370 L I + Sbjct: 354 LINEPHVFNIDHG 366 >gi|227550643|ref|ZP_03980692.1| recombination protein F [Enterococcus faecium TX1330] gi|257896290|ref|ZP_05675943.1| recombination protein F [Enterococcus faecium Com12] gi|227180222|gb|EEI61194.1| recombination protein F [Enterococcus faecium TX1330] gi|257832855|gb|EEV59276.1| recombination protein F [Enterococcus faecium Com12] Length = 374 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 163/374 (43%), Gaps = 14/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A ++G ++ LE + R +IN + + + + + Sbjct: 61 IGWNDDQ-----AMIQGEIAKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238 + + Q+A G K+ AR + I L Q+ + +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++E++ L +K D T +GPHR DL K + +GS G+Q+ + Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 I LA LI TG PILLLD++ + LD++++ L + Q F+T T + Sbjct: 295 IKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353 Query: 358 LNETAKFMRISNHQ 371 + + + + Sbjct: 354 MTVEPEIFYVRQGK 367 >gi|86747131|ref|YP_483627.1| recombination protein F [Rhodopseudomonas palustris HaA2] gi|86570159|gb|ABD04716.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris HaA2] Length = 378 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 145/370 (39%), Positives = 211/370 (57%), Gaps = 3/370 (0%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY + L A+ + VG NG GKTN LEAISFLSPGRG RRA+ DV Sbjct: 5 RITRLTLTHFRNYRAAVLTTSAERVVLVGANGAGKTNCLEAISFLSPGRGLRRATLDDVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ A VEG GLA + ++ D + R +I+ + HLR+ Sbjct: 65 DNEGDGSWAVAAEVEGALGLATLGTGIDPPRADAATSRRCRIDREPVGSATAFGDHLRMV 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P+MD +F G + ERRRF DR+V AID +H R+ +R +R RNRLL Y D+ W Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSQHSGRVSALDRSLRSRNRLLEVRYPDAHWL 184 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242 +IE + AEL V + R + L++++ FP K+ L G+++ + A Sbjct: 185 DAIERETAELAVAVAAMRGQTAMRLAAMLDARGAASAFPSAKIMLDGWMESALLTEPATA 244 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ Y L +GR D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ LA Sbjct: 245 VEDRYRTILREGRPRDAAAGRTLDGPHLTDLEVVYAPKAMPARDASTGEQKALLIGLVLA 304 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA+L+S TG P+LLLDE+ AHLD +R ALF + +G+Q++MTG D + F + A Sbjct: 305 HAQLVSEMTGITPLLLLDEVVAHLDPSRRAALFEELAKLGAQVWMTGADPAAFAEIGSGA 364 Query: 363 KFMRISNHQA 372 + + + + Sbjct: 365 EIFTVESGRI 374 >gi|329576321|gb|EGG57836.1| DNA replication and repair protein RecF [Enterococcus faecalis TX1467] Length = 375 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 168/376 (44%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + Y D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKYPDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q+AE G K+ AR+ + L QK + L++ D Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235 Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S AL+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ + Sbjct: 236 LSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356 I LA L+ + TG P+LLLD++ + LD +++ L + Q F+T T D Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKD 353 Query: 357 SLNETAKFMRISNHQA 372 L + + Sbjct: 354 KLTVEPDIFYVQQGKI 369 >gi|257899274|ref|ZP_05678927.1| recombination protein F [Enterococcus faecium Com15] gi|293572721|ref|ZP_06683685.1| DNA replication and repair protein RecF [Enterococcus faecium E980] gi|257837186|gb|EEV62260.1| recombination protein F [Enterococcus faecium Com15] gi|291607213|gb|EFF36571.1| DNA replication and repair protein RecF [Enterococcus faecium E980] Length = 374 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 163/374 (43%), Gaps = 14/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A ++G ++ LE + R +IN + + + + + Sbjct: 61 IGWNDDQ-----AMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238 + + Q+A G K+ AR + I L Q+ + +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++E++ L +K D T +GPHR DL K + +GS G+Q+ + Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA LI TG PILLLD++ + LD++++ L + Q F+T T + Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353 Query: 358 LNETAKFMRISNHQ 371 + + + + Sbjct: 354 MTVEPEIFYVRQGK 367 >gi|257878649|ref|ZP_05658302.1| recombination protein F [Enterococcus faecium 1,230,933] gi|257812877|gb|EEV41635.1| recombination protein F [Enterococcus faecium 1,230,933] Length = 374 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 163/374 (43%), Gaps = 14/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A ++G ++ LE + R +IN + + + + + Sbjct: 61 I-----GWTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQTRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+A G K+ AR + + L Q+ +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITHQKEQLEIEYLTAVDSLETH 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++E++ L +K D T +GPHR DL K + +GS G+Q+ + Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA LI TG PILLLD++ + LD++++ L + Q F+T T + Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353 Query: 358 LNETAKFMRISNHQ 371 + + + + Sbjct: 354 MTVEPEIFYVQQGK 367 >gi|256060148|ref|ZP_05450330.1| recombination protein F [Brucella neotomae 5K33] gi|261324125|ref|ZP_05963322.1| DNA replication and repair protein recF [Brucella neotomae 5K33] gi|261300105|gb|EEY03602.1| DNA replication and repair protein recF [Brucella neotomae 5K33] Length = 384 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 165/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M R ++IN + D+L + R Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|16799084|ref|NP_469352.1| recombination protein F [Listeria innocua Clip11262] gi|20978613|sp|Q92FU8|RECF_LISIN RecName: Full=DNA replication and repair protein recF gi|16412426|emb|CAC95238.1| RecF protein [Listeria innocua Clip11262] Length = 370 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 159/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG ++ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + + Sbjct: 176 MLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + + Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D + Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHNT 353 Query: 359 NETAKFMRISNHQA 372 A + Sbjct: 354 LRQATTFYVEKGTV 367 >gi|270289889|ref|ZP_06196115.1| DNA replication and repair protein recF [Pediococcus acidilactici 7_4] gi|270281426|gb|EFA27258.1| DNA replication and repair protein recF [Pediococcus acidilactici 7_4] Length = 374 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 157/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRNYA L + F + + +G+N GKTN+LE+I FL+ R R ++ D+ Sbjct: 1 MYLKTLELHNFRNYADLSVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTSNDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + ARV G +E + ++N + + + L + Sbjct: 61 IGWKAKE-----ARVLGTIQKEHTQTPVEIDISSKGKNAKVNHIEQGRLSQYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P I G RRRF+D + ++ + +++ RN+ L + D Sbjct: 116 FAPEDLSIVKGSPAVRRRFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYLKQLQIDPKGDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q+A G +I R++ + L ++ + KL+ K D+ Sbjct: 176 VYLDVLSDQLAAYGAEIIFQRIQFLKKLEEWSQAVHEEISQGLEKLTFQYVSPLKKDETT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S + + L R+ + +TL+GPH D+ K ++ GS G+Q+ + Sbjct: 236 STETIYTALQELLKKHRQRELQQGKTLVGPHLDDVRFIVNGKNVS-TFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDS 357 + LA L+ TG P+LLLD++ + LD+ ++ L + + Q F+T T S V Sbjct: 295 VKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQNK-VQTFITTTSLSGVAQQ 353 Query: 358 LNETAKFMRISNH 370 L I + Sbjct: 354 LINEPHVFNIDHG 366 >gi|257888092|ref|ZP_05667745.1| recombination protein F [Enterococcus faecium 1,141,733] gi|293379371|ref|ZP_06625515.1| DNA replication and repair protein RecF [Enterococcus faecium PC4.1] gi|257824146|gb|EEV51078.1| recombination protein F [Enterococcus faecium 1,141,733] gi|292641894|gb|EFF60060.1| DNA replication and repair protein RecF [Enterococcus faecium PC4.1] Length = 374 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 163/374 (43%), Gaps = 14/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A ++G ++ LE + R +IN + + + + + Sbjct: 61 IGWNDDQ-----AMIQGEIAKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238 + + Q+A G K+ AR + I L Q+ + +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++E++ L +K D T +GPHR DL K + +GS G+Q+ + Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA LI TG PILLLD++ + LD++++ L + Q F+T T + Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353 Query: 358 LNETAKFMRISNHQ 371 + + + + Sbjct: 354 MTVEPEIFYVRQGK 367 >gi|227889154|ref|ZP_04006959.1| recombination protein F [Lactobacillus johnsonii ATCC 33200] gi|227850383|gb|EEJ60469.1| recombination protein F [Lactobacillus johnsonii ATCC 33200] Length = 374 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 161/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + +FRN+ L++ FD IF+G N GKTN+LEAI FL+ R R S ++ Sbjct: 1 MYLANFELKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FA ++G + + ++L+ R + + +N + + + + Sbjct: 61 IRFGSK-----FAGLQGKVHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLALVKGAPSTRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + + Q+A + +I R++ I L+S + + KL + K D Sbjct: 176 VFLDVLSDQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVKEITPD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + ++ R + TL GPHR DL DK S G+Q+ + + Sbjct: 236 DDVETIYQKVITSYKKNRPNEIRKGTTLSGPHRDDLDFLINDKN-AHDFASQGQQRTISL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T PILLLD++ + LD ++++L + +Q F+T TD Sbjct: 295 SVKLAEIQLVHELTQEYPILLLDDVMSELDNRRQSSLLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + K IS Sbjct: 354 EIVKEPKVYHISAGTI 369 >gi|260588814|ref|ZP_05854727.1| RecF protein [Blautia hansenii DSM 20583] gi|260540593|gb|EEX21162.1| RecF protein [Blautia hansenii DSM 20583] Length = 361 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 90/375 (24%), Positives = 158/375 (42%), Gaps = 21/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY SL L FD IF GDN GKTNILEA S + R + ++ Sbjct: 1 MYIESIELKNYRNYNSLALEFDKGTNIFYGDNAQGKTNILEAAYLCSTTKSHRGSKDREL 60 Query: 65 TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + F +G+ D+ +K + + I+ + IR EL L I Sbjct: 61 IKFDADEAHIRMFVNKDGISRKIDMHLK-----KSKPKGIAIDGIPIRKASELFGLLNIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + +D + + + ++ RN+LL + F S Sbjct: 116 FFSPEDLNIIKNGPGERRRFMDLELCQLDKLYLSNLSSYNHVLNQRNKLLKDIAFQESLK 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q + G +I R I+ ++ ++ + K+ L Sbjct: 176 DTLEIWDEQFVQYGREIIETRRRFIDEINGIMEKIHSSITGNREKIELVY--------EP 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E + ++L R+ D ++T +GPHR D V I +GS G+Q+ + + Sbjct: 228 SVPDENFYQELSKNREKDCRFKQTSVGPHRDDFSVKVNGIDIR-RYGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359 L+ ++ P+LLLD++ + LD +++N L ++ Q +T T F D Sbjct: 287 LSEIYMVKKVIKDMPVLLLDDVLSELDSNRQNYLLNSISH--VQTMITCTGLDDFIDKRF 344 Query: 360 ETAKFMRISNHQALC 374 K ++ + C Sbjct: 345 HINKIFKVIDGDVFC 359 >gi|69246709|ref|ZP_00604077.1| RecF protein [Enterococcus faecium DO] gi|257881315|ref|ZP_05660968.1| recombination protein F [Enterococcus faecium 1,231,502] gi|257890532|ref|ZP_05670185.1| recombination protein F [Enterococcus faecium 1,231,410] gi|257893107|ref|ZP_05672760.1| recombination protein F [Enterococcus faecium 1,231,408] gi|258615267|ref|ZP_05713037.1| recombination protein F [Enterococcus faecium DO] gi|260558230|ref|ZP_05830426.1| RecF protein [Enterococcus faecium C68] gi|261206920|ref|ZP_05921609.1| RecF protein [Enterococcus faecium TC 6] gi|289566503|ref|ZP_06446927.1| DNA replication and repair protein recF [Enterococcus faecium D344SRF] gi|293563254|ref|ZP_06677706.1| DNA replication and repair protein RecF [Enterococcus faecium E1162] gi|293569156|ref|ZP_06680462.1| DNA replication and repair protein RecF [Enterococcus faecium E1071] gi|294616656|ref|ZP_06696427.1| DNA replication and repair protein RecF [Enterococcus faecium E1636] gi|294623762|ref|ZP_06702590.1| DNA replication and repair protein RecF [Enterococcus faecium U0317] gi|314940128|ref|ZP_07847308.1| recombination protein F [Enterococcus faecium TX0133a04] gi|314943041|ref|ZP_07849845.1| recombination protein F [Enterococcus faecium TX0133C] gi|314948159|ref|ZP_07851555.1| recombination protein F [Enterococcus faecium TX0082] gi|314953427|ref|ZP_07856345.1| recombination protein F [Enterococcus faecium TX0133A] gi|314993834|ref|ZP_07859170.1| recombination protein F [Enterococcus faecium TX0133B] gi|314998141|ref|ZP_07863023.1| recombination protein F [Enterococcus faecium TX0133a01] gi|68195123|gb|EAN09582.1| RecF protein [Enterococcus faecium DO] gi|257816973|gb|EEV44301.1| recombination protein F [Enterococcus faecium 1,231,502] gi|257826892|gb|EEV53518.1| recombination protein F [Enterococcus faecium 1,231,410] gi|257829486|gb|EEV56093.1| recombination protein F [Enterococcus faecium 1,231,408] gi|260075404|gb|EEW63710.1| RecF protein [Enterococcus faecium C68] gi|260078548|gb|EEW66250.1| RecF protein [Enterococcus faecium TC 6] gi|289161712|gb|EFD09588.1| DNA replication and repair protein recF [Enterococcus faecium D344SRF] gi|291588125|gb|EFF19967.1| DNA replication and repair protein RecF [Enterococcus faecium E1071] gi|291590476|gb|EFF22214.1| DNA replication and repair protein RecF [Enterococcus faecium E1636] gi|291596716|gb|EFF27939.1| DNA replication and repair protein RecF [Enterococcus faecium U0317] gi|291604793|gb|EFF34275.1| DNA replication and repair protein RecF [Enterococcus faecium E1162] gi|313587853|gb|EFR66698.1| recombination protein F [Enterococcus faecium TX0133a01] gi|313591725|gb|EFR70570.1| recombination protein F [Enterococcus faecium TX0133B] gi|313594530|gb|EFR73375.1| recombination protein F [Enterococcus faecium TX0133A] gi|313598241|gb|EFR77086.1| recombination protein F [Enterococcus faecium TX0133C] gi|313640633|gb|EFS05213.1| recombination protein F [Enterococcus faecium TX0133a04] gi|313645413|gb|EFS09993.1| recombination protein F [Enterococcus faecium TX0082] Length = 374 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 163/374 (43%), Gaps = 14/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A ++G ++ LE + R +IN + + + + + Sbjct: 61 I-----GWTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+A G K+ AR + + L Q+ +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITHQKEQLEIEYLTAVDSLETH 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++E++ L +K D T +GPHR DL K + +GS G+Q+ + Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA LI TG PILLLD++ + LD++++ L + Q F+T T + Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353 Query: 358 LNETAKFMRISNHQ 371 + + + + Sbjct: 354 MTVEPEIFYVQQGK 367 >gi|291561641|emb|CBL40440.1| DNA replication and repair protein RecF [butyrate-producing bacterium SS3/4] Length = 361 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 162/372 (43%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + +S++RNY+ L + F + GDN GKTNILEA+ S + R + ++ Sbjct: 1 MFIESIELSDYRNYSHLHIDFHKGTNVLYGDNAQGKTNILEAVYVCSTTKSHRGSKDKEI 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ S R +G+ D+ +K + + +N V I+ EL + + Sbjct: 61 IRFGADESHIKMMVRRDGIPYRIDMHLK-----KNKAKGVAVNGVPIKKASELFGIVNVI 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + ++ + + + + + RN+LL + +++S Sbjct: 116 FFSPEDLNIIKNGPAERRRFVDLELCQLNRLYVYNLAQYNKTVIQRNKLLKDIDYNTSLK 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 Q+ + G ++ I R E I L+ LI E + LS+ + Sbjct: 176 ETLPMWNEQLLKYGTELIIMRSEFIKELNPLIAEIHAGLSGGKETLSIAYEPNVS----- 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E + ++L + + R+TL GPHR DL I GS G+Q+ + + Sbjct: 231 ---PENFREQLAKNQFQEIRQRQTLTGPHRDDLNFIVNGTDIR-RFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ P+LLLD++ + LD ++ L +T I + I TG D+ V Sbjct: 287 LAEIELVKKIVKDYPVLLLDDVLSELDSKRQEHLLSEITHIQTLITCTGLDEFVNSKFRM 346 Query: 361 TAKFMRISNHQA 372 K +I Sbjct: 347 D-KIFKIVEGTV 357 >gi|289433378|ref|YP_003463250.1| DNA replication and repair protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169622|emb|CBH26156.1| DNA replication and repair protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 370 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 158/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG ++ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIEKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + Sbjct: 176 LLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHSQISRGLETLKIEYKASVTLAGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + + Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D + Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHNT 353 Query: 359 NETAKFMRISNHQA 372 + A + Sbjct: 354 LKQATTFYVEKGTV 367 >gi|90421531|ref|YP_529901.1| recombination protein F [Rhodopseudomonas palustris BisB18] gi|90103545|gb|ABD85582.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris BisB18] Length = 379 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 142/370 (38%), Positives = 207/370 (55%), Gaps = 3/370 (0%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI L ++ FRNY + + + VG NG GKTN LEAIS LSPGRG RRA+ D+ Sbjct: 5 KIHRLTLTHFRNYRAASVTVRGDVVVLVGPNGAGKTNCLEAISLLSPGRGLRRATLDDIA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDELNKHLRIS 123 ++ A VEG GLA + ++ R + + R +I+ + HLR+ Sbjct: 65 DNHGDGSWAVSAEVEGALGLATLGTGIDPRTEAAATTRRCRIDRENVGSAAAFGDHLRMV 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P+MD +F G + ERRRF DR+V AID +H R+ +R +R RNRLL + DS W Sbjct: 125 WLTPAMDGLFLGAASERRRFFDRLVLAIDSQHSSRVSALDRSLRSRNRLLEQRSHDSHWL 184 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242 +IE + AEL V + R E + L++ + + FP ++L G+++ + A Sbjct: 185 DAIERETAELAVAVAAMRGETVTRLAAALAQRSADSAFPSATIALDGWMENALRSEPATA 244 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ Y L D R D+ + RTL GPH +DL V Y K + STGEQK +L+G+ LA Sbjct: 245 VEDRYRTSLRDNRARDAAAGRTLDGPHLTDLRVIYTPKNMPARDASTGEQKALLIGLVLA 304 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L++ TG P+LLLDE+ AHLD +R ALF + +G+Q++MTG D + F L E Sbjct: 305 HAYLVAEMTGITPLLLLDEVVAHLDPSRRKALFGELARLGAQVWMTGADPAAFVDLGEGG 364 Query: 363 KFMRISNHQA 372 + + N + Sbjct: 365 ELFEVDNGRI 374 >gi|294619748|ref|ZP_06699153.1| DNA replication and repair protein RecF [Enterococcus faecium E1679] gi|291594018|gb|EFF25487.1| DNA replication and repair protein RecF [Enterococcus faecium E1679] Length = 374 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 162/374 (43%), Gaps = 14/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A ++G ++ LE + R +IN + + + + + Sbjct: 61 I-----GWTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+A G K+ AR + + L Q+ +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITHQKEQLEIEYLTAVDSLETH 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++E++ L +K D T +GPHR DL K + +GS G+Q+ + Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA LI TG PILLLD++ + LD+ ++ L + Q F+T T + Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDSRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353 Query: 358 LNETAKFMRISNHQ 371 + + + + Sbjct: 354 MTVEPEIFYVQQGK 367 >gi|118443917|ref|YP_879295.1| recombination protein F [Clostridium novyi NT] gi|166220706|sp|A0Q3U3|RECF_CLONN RecName: Full=DNA replication and repair protein recF gi|118134373|gb|ABK61417.1| recF protein [Clostridium novyi NT] Length = 361 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 170/370 (45%), Gaps = 13/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + FRNY L L + +F+GDN GKTNILE+I + S G+ R ++ Sbjct: 1 MYIKNLELINFRNYEILSLKLHSGINVFIGDNAQGKTNILESIYYCSIGKSHRTNKDKEL 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G+ ++ S + E ++ DI I E + +++N + ++ + +L + Sbjct: 61 IKWGARDAYISVYISKERLDKKIDIKIFKE-----GKKGVRVNSIKLKTISDLIGVFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P +I RR+FLD + ++ ++ ++ + +++ RN +L + ++ Sbjct: 116 MFSPEDLKIVKESPSYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNTILRKWNSNTEVT 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++ G I R++ I +LS + + + K + Sbjct: 176 EVYDHQLSKYGSYIIKERLKYIESLSIRGNKIHKDITSQKENIEFKYITSIK---DLNNI 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + ++ L + K D T GPHR D V+ + T GS G+Q+ ++ I LA Sbjct: 233 QNDFYNLLRENVKKDFEKGSTSFGPHRDDFAVNINNTD-TRTFGSQGQQRTAVLTIKLAS 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETA 362 +I TG P+LLLD++ + LD +++ + + + Q +TGT + + L++ Sbjct: 292 LEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIREF--QTIITGTGLIDIREYLDDHV 349 Query: 363 KFMRISNHQA 372 K +++N Sbjct: 350 KLFKVTNGTV 359 >gi|56961786|ref|YP_173508.1| recombination protein F [Bacillus clausii KSM-K16] gi|81679102|sp|Q5WM28|RECF_BACSK RecName: Full=DNA replication and repair protein recF gi|56908020|dbj|BAD62547.1| DNA replication and repair protein RecF [Bacillus clausii KSM-K16] Length = 372 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L +S +RNY+ +VF + +FVG+N GKTN+LEAI ++ + R ++ Sbjct: 1 MIIHTLELSSYRNYSKTAVVFGEKINVFVGENAQGKTNLLEAIYVVALAKSHRTQKDKEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F A+ E G ++ I L + + +IN + R + + L + Sbjct: 61 IGFEEP-FARIHAKAEKRTGEVELDIILSAKGKKG----KINGLEQRRLSDYVGTLNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P + G RRRF+D + I P + + + ++++ RN LL S Sbjct: 116 FAPEDLDLVKGSPQVRRRFIDMELGQISPVYLNSLSLYGKILKQRNVLLKNMQQKRSQNY 175 Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238 + Q+ + + R E I+ L Q + L+L+ + + Sbjct: 176 AMVDVLTEQLIDKAAFVMKKRAEFISRLEEWATPIHQSISRGKEMLTLSYIPSIEVSDIE 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + +KE+ K R+ + TL GPHR D+ + ++GS G+Q+ + Sbjct: 236 NMSKIKEDLYKAYETKRETEVRRGTTLFGPHRDDVSFSVNGLDV-QSYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA LI G PILLLD++ + LD +++ L + Q F+T T S DS Sbjct: 295 VKLAEIDLIYAEIGDYPILLLDDVLSELDNYRQSHLLEAIQA-RVQTFVTTTSTSGLDDS 353 Query: 358 LNETAKFMRISNHQA 372 + A + Sbjct: 354 VLAEACLFSVDQGTV 368 >gi|255283817|ref|ZP_05348372.1| RecF protein [Bryantella formatexigens DSM 14469] gi|255265700|gb|EET58905.1| RecF protein [Bryantella formatexigens DSM 14469] Length = 360 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 154/372 (41%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + +FRNY SL+L FD+ IF GDN GKTNILEA+ + R + +V Sbjct: 1 MIVQSIELEKFRNYKSLKLKFDSGTNIFYGDNAQGKTNILEAVYLCGTTKSHRGSKDREV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + R++ I I + + + + IN V IR EL + Sbjct: 61 IQFQEEE---SHLRMKVERNNVPIEIDMHLK-KNKPKGIAINGVPIRKASELFGIANFVF 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---S 181 P I RR F+D + + + + ++ +++ RNRLL E F Sbjct: 117 FSPEDLNIIKDGPSVRRHFIDMELCQLHKVYLHHLSNYNKVINQRNRLLKESAFRPDILD 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + QMAE G K+ R I L+ +I + L + Sbjct: 177 TLDIWDIQMAEYGKKVIEERRAFIRRLNEIIDSIHGRLTGEKEHLRIIY--------EEN 228 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 EE+A+ L R+ D + ++ GPHR D+ I GS G+Q+ + + L Sbjct: 229 VTAEEFAEALRSSREKDLRMKMSMTGPHRDDICFQTNGVDIR-KFGSQGQQRTAALSLKL 287 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNE 360 + L+ G PILLLD++ + LD ++ L + DI Q F+T T F + Sbjct: 288 SEIELVKQEIGDTPILLLDDVLSELDSSRQKYLLDSIHDI--QTFITCTGLDDFVQNRFH 345 Query: 361 TAKFMRISNHQA 372 K + + Sbjct: 346 INKVFHVVEGKV 357 >gi|148560734|ref|YP_001258052.1| recombination protein F [Brucella ovis ATCC 25840] gi|148371991|gb|ABQ61970.1| recF protein [Brucella ovis ATCC 25840] Length = 384 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 165/371 (44%), Positives = 232/371 (62%), Gaps = 2/371 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M R ++IN + D+L + R Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMDR+F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDRLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q F+TGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFITGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|257885590|ref|ZP_05665243.1| recombination protein F [Enterococcus faecium 1,231,501] gi|257821446|gb|EEV48576.1| recombination protein F [Enterococcus faecium 1,231,501] Length = 374 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 163/374 (43%), Gaps = 14/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L + F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A ++G ++ LE + R +IN + + + + + Sbjct: 61 I-----GWTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+A G K+ AR + + L Q+ +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITHQKEQLEIEYLTAVDSLETH 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++E++ L +K D T +GPHR DL K + +GS G+Q+ + Sbjct: 236 TQEQIQEQFLALLNQNKKKDFFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA LI TG PILLLD++ + LD++++ L + Q F+T T + Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353 Query: 358 LNETAKFMRISNHQ 371 + + + + Sbjct: 354 MTVEPEIFYVQQGK 367 >gi|295398132|ref|ZP_06808181.1| recombination protein F [Aerococcus viridans ATCC 11563] gi|294973651|gb|EFG49429.1| recombination protein F [Aerococcus viridans ATCC 11563] Length = 371 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 161/377 (42%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + + +FRNY L + F +F+G+N GKT++LEAI +S R R A+ D Sbjct: 1 MQLNDIKLKDFRNYEDLTVTFSPGVNVFIGENAQGKTSLLEAIYMMSLARSHRTANEKDT 60 Query: 65 TRIGSPSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 FAR+EG + + + L +S + ++N + + + L + Sbjct: 61 IHWKQD-----FARIEGSISTRTNPDLPLALTITKSGKRAKVNHLNQNRMSDYIGKLNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFD 179 P + G RR+F+D + + P++ + + RL++ RN L + D Sbjct: 116 LFAPEDLELIKGAPQLRRKFIDMELGQMSPKYLYESVQYNRLLKQRNAYLKQLLYKETQD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFD 237 + + Q+A + R+ ++ L S + + L+ G + D Sbjct: 176 QIYLDILTEQLAASATHVIYQRLRFVDQLESWAKPIHSNISHGLEELTLAYRGPSELTLD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + A+ ++ K + + + TL+GPHR DL + + GS G+Q+ ++ Sbjct: 236 MTEDAIYQQLMTKFKEKKDHEFARGVTLVGPHRDDLTFKVNGRDV-QKFGSQGQQRTTVL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA + G PILLLD++ + LD++++ L + + Q F+T T Sbjct: 295 SMKLAEIECMHEVLGEYPILLLDDVLSELDDERQTHLLKSIQSK-VQTFLTTTSLDGIQR 353 Query: 357 SLNETAKFMRISNHQAL 373 L E + I + Sbjct: 354 ELIEEPRVFNIDAGAIV 370 >gi|229917452|ref|YP_002886098.1| DNA replication and repair protein RecF [Exiguobacterium sp. AT1b] gi|259563366|sp|C4KZZ0|RECF_EXISA RecName: Full=DNA replication and repair protein recF gi|229468881|gb|ACQ70653.1| DNA replication and repair protein RecF [Exiguobacterium sp. AT1b] Length = 372 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 156/374 (41%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + +RNY +L L F Q + +G+N GKTN+LE+I L+ + R ++ Sbjct: 1 MHLKSIRLQNYRNYETLELDFSEQTNVLIGENAQGKTNLLESIYVLALAKSHRTTQDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + S R+ G + S+ + ++ ++N + R + + + Sbjct: 61 IGWEADAA-SIEGRIHKRTGESVQSLSFSPKGKKA----KLNHLEQRRLSDYVGAFNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P I G RRRFLD + + P + + + + ++ RN LL + D + Sbjct: 116 FAPEDLAIVKGSPQGRRRFLDMEIGQVSPVYLHELNQYLKTLKQRNALLKQLSTKGGDET 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQS 239 + Q+ EL VKI + R I+ L L++ D K S Sbjct: 176 LLEVLTDQLIELAVKIVMRRYHFIDQLEKWANPIHSGITRDLETLTIQYVSDTFQKERFS 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + E Y +K R+ + TL GPHR D + ++ + GS G+Q+ + + Sbjct: 236 KEQMFETYRQKFDKIRENERRRGVTLFGPHRDDFELYVNNRNV-QTFGSQGQQRTAALSL 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI G P+LLLD++ + LD+ ++ L + Q +T T+ Sbjct: 295 KLAEIELIHEEVGEYPLLLLDDVLSELDDHRQTHLLDTM-GRKVQTILTTTNIDGIAHET 353 Query: 359 NETAKFMRISNHQA 372 + AK + + Sbjct: 354 IQQAKVFHVKQGEV 367 >gi|42518088|ref|NP_964018.1| recombination protein F [Lactobacillus johnsonii NCC 533] gi|51316301|sp|Q74M31|RECF_LACJO RecName: Full=DNA replication and repair protein recF gi|41582372|gb|AAS07984.1| DNA replication and repair protein RecF [Lactobacillus johnsonii NCC 533] gi|329666395|gb|AEB92343.1| recombination protein F [Lactobacillus johnsonii DPC 6026] Length = 374 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 161/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + +FRN+ L++ FD IF+G N GKTN+LEAI FL+ R R S ++ Sbjct: 1 MYLANFELKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FA ++G + + ++L+ R + + +N + + + + Sbjct: 61 IRFGSK-----FAGLQGKVHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLALVKGAPSIRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + + Q+A + +I R++ I L+S + + KL + K D Sbjct: 176 VFLDVLSDQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVKEITPD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + ++ R + TL GPHR DL DK S G+Q+ + + Sbjct: 236 DDVETIYQKVITSYKKNRPNEIRKGTTLSGPHRDDLDFLINDKN-AHDFASQGQQRTISL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T PILLLD++ + LD ++++L + +Q F+T TD Sbjct: 295 SVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSSLLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + K IS Sbjct: 354 EIVKEPKVYHISAGTI 369 >gi|331004663|ref|ZP_08328125.1| hypothetical protein HMPREF0491_02987 [Lachnospiraceae oral taxon 107 str. F0167] gi|330409590|gb|EGG89030.1| hypothetical protein HMPREF0491_02987 [Lachnospiraceae oral taxon 107 str. F0167] Length = 363 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 168/372 (45%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + ++RNY +L + + IF GDN GKTNILE+I + + R + D+ Sbjct: 1 MIIESLELKDYRNYENLDIKLSSGVNIFYGDNAQGKTNILESIYLATTSKSHRGSKDKDI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 + GS + ++ M S++L+ +S + + IN + IR + EL + Sbjct: 61 IKFGSNE-----SHIKLMIEKNSSSVRLDMHLKKSKSKGVAINGIPIRKLSELFGTCNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---S 180 + P I ERR F+D + ++ + ++ + +++ RN+LL E F Sbjct: 116 FFSPEDLNIIKRSPKERRNFVDMELCQLNKLYVSTLVTYNKVLDQRNKLLKEIGFKSGVE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ + G + R I L+ +I + K+++ + + Sbjct: 176 DTLDIWDMQLVKYGKDLIAYREAFIKELNEVIYGIHSLLSGGE-KINVVYEKNVE----- 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K+++ ++L R D + T +GPHR D + GS G+Q+ + + + Sbjct: 230 ---KDDFEEELKKSRTSDIRYKTTNVGPHRDDFSFFLNGEMDLKKFGSQGQQRSLALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ LI + G P+LLLD++ + LD +++ L + I + I TG + + SL + Sbjct: 287 LSEIELIKSRYGEFPVLLLDDVLSELDGKRQSHLLESIKHIQTLITCTGVEDFLNKSL-D 345 Query: 361 TAKFMRISNHQA 372 K +++N Sbjct: 346 IGKVFKVTNGTI 357 >gi|223043401|ref|ZP_03613447.1| DNA replication and repair protein RecF [Staphylococcus capitis SK14] gi|222443190|gb|EEE49289.1| DNA replication and repair protein RecF [Staphylococcus capitis SK14] Length = 371 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 90/377 (23%), Positives = 163/377 (43%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + ++RNY + L + I +G+N GKTN+LE+I L+ + R ++ ++ Sbjct: 1 MKLNTLQLEKYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +A++EG ++ L + + +++N + + + HL + Sbjct: 61 IRFKAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSKLTQYVGHLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + I + + ++R+++ +N L + D+ Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD---GKFD 237 + + Q A+ +K+ + R I L L KL L ++ Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLGLKYLPSLKLSDYE 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + L EE + L D + + L GPHR DL + +GS G+Q+ + Sbjct: 236 KEESELLEEVIELLNDNLQREKERGVCLYGPHRDDLGFNVNGMD-AQTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA L++ G PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353 Query: 357 SLNETAKFMRISNHQAL 373 + AK RIS + L Sbjct: 354 EIMNNAKLYRISQGELL 370 >gi|28376978|ref|NP_783870.1| recombination protein F [Lactobacillus plantarum WCFS1] gi|254555173|ref|YP_003061590.1| recombination protein F [Lactobacillus plantarum JDM1] gi|300769109|ref|ZP_07078998.1| recombination protein F [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179195|ref|YP_003923323.1| recombination protein F [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258550|sp|Q890K5|RECF_LACPL RecName: Full=DNA replication and repair protein recF gi|28269809|emb|CAD62706.1| DNA repair and genetic recombination protein RecF [Lactobacillus plantarum WCFS1] gi|254044100|gb|ACT60893.1| recombination protein F [Lactobacillus plantarum JDM1] gi|300493349|gb|EFK28528.1| recombination protein F [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044686|gb|ADN97229.1| recombination protein F [Lactobacillus plantarum subsp. plantarum ST-III] Length = 374 Score = 335 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 157/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRNYA L + F + +G+N GKTN+LEAI L+ R R A+ ++ Sbjct: 1 MYLENLVLHDFRNYADLTINFSQGVNVLLGENAQGKTNLLEAIYVLALTRSHRTANDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +T A ++G + ++ LE R + ++N + + + +L + Sbjct: 61 IRWQ-----TTTATLQGRLHKSTGAVPLELELGRRGKRAKVNHLEQAKLSQYVGNLNVIV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180 P I G RRRF+D + P++ + + +++ RN+ L + D Sbjct: 116 FAPEDLSIVKGAPAVRRRFMDMEFGQMSPKYLYNLSQYRTILKQRNQYLRQLNRQQAKDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + + Q+A G +I R++++ L + +L+ + Sbjct: 176 VYLGVLSDQLAAFGAEIIHKRLQLLQQLEKWAQAVHSEITQEQEQLTFHYVTQVPTADQT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S + + + + TL+GPHR DL K + GS G+Q+ + Sbjct: 236 SVDHIYQTLQALYQQQQAKEIFQGTTLLGPHRDDLQFGVNGKNV-QTFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG P+LLLD++ + LD ++ L + D Q F+T Sbjct: 295 VKLAEIDLMKAETGEYPVLLLDDVLSELDAARQTHLLTAIQDK-VQTFLTTPSLDGVARK 353 Query: 358 LNETAKFMRISNH 370 L K +S+ Sbjct: 354 LINAPKVFEVSHG 366 >gi|118590458|ref|ZP_01547860.1| recombination protein F [Stappia aggregata IAM 12614] gi|118436921|gb|EAV43560.1| recombination protein F [Stappia aggregata IAM 12614] Length = 382 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 161/369 (43%), Positives = 231/369 (62%), Gaps = 5/369 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L+++ FRNY++L L A+ FVG NG GKTNILEAISFL+ GRG RRA+ AD+ Sbjct: 8 QLTRLSLTGFRNYSALTLPLTAKMAAFVGPNGAGKTNILEAISFLTAGRGLRRAALADIA 67 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R G +S A V + + I S R ++I+ +R + L ++R+ WL Sbjct: 68 RKGGDGSWSVAATV--LLDGFETRIGTGLVAGTSGRKVRIDGEEVRGSESLLDYMRVLWL 125 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 VPSMD +F+G +RRRFLDR+ AIDP H RR+ DFE +R RNRLL +G D ++ S+ Sbjct: 126 VPSMDGLFTGPGSDRRRFLDRLTLAIDPTHGRRVSDFENALRQRNRLLDQGGSD-AYLSA 184 Query: 186 IEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSLTGFLDGKFD-QSFCAL 243 +E Q+AELG ++IAR E ++ LS +I + Q FPH +SL G + + S Sbjct: 185 LEQQVAELGTAVSIARTETVDLLSRMIAGQATQDLPFPHASVSLEGAFEAETAGLSASDR 244 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ Y + L DGR D + RTL GPH SDL V + KA+ + STGEQK +L+G+ LAH Sbjct: 245 EDRYRQMLQDGRHRDRAAGRTLNGPHLSDLTVFHAAKAMPASQSSTGEQKALLIGLILAH 304 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 A L + +G P+LLLDE++AHLD D+R+ALF + +G Q+FMTGTD+++F++L A+ Sbjct: 305 AELTAKVSGMTPVLLLDEVAAHLDPDRRSALFSKLDSLGGQVFMTGTDEALFEALPAEAE 364 Query: 364 FMRISNHQA 372 I H+ Sbjct: 365 VFEIREHKG 373 >gi|283797182|ref|ZP_06346335.1| RecF protein [Clostridium sp. M62/1] gi|291075140|gb|EFE12504.1| RecF protein [Clostridium sp. M62/1] gi|295090281|emb|CBK76388.1| DNA replication and repair protein RecF [Clostridium cf. saccharolyticum K10] gi|295115476|emb|CBL36323.1| DNA replication and repair protein RecF [butyrate-producing bacterium SM4/1] Length = 368 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 160/374 (42%), Gaps = 19/374 (5%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 N + ++ + + +RNY SL +VFD + GDN GKTN+LEA+ + + R + Sbjct: 6 NNMFVESIELKNYRNYGSLSMVFDPGTNVLYGDNAQGKTNVLEAVYVCATTKSHRGSKDK 65 Query: 63 DVTRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 ++ R S R + + D+ +K + + IN V IR EL + Sbjct: 66 EIIRFAEDESHIKMNIRKDNVPYRIDMHLK-----KNKTKGIAINGVPIRRASELFGIVN 120 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + + P I ERRRF+D + ++ + ++ + R + RN+LL E F Sbjct: 121 VVFFSPEDLNIIKNGPAERRRFVDLELCQLNRLYVHALVQYNRTLTQRNKLLKELPFKPE 180 Query: 182 W---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + Q+ G ++ R E L+ +I + ++ + +L + + + Sbjct: 181 LLETLDIWDMQLVSFGRELIRYRREFAGELNEMIRDIHRQLSGGREELVICYEPNTE--- 237 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +E + L GR+ D + TL GPHR DL I GS G+Q+ + Sbjct: 238 -----EEAFETALKRGREADIRQKTTLSGPHRDDLSFSVNGVDIR-RFGSQGQQRTAALS 291 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA L+ P+LLLD++ + LD ++ L + I + I TG D V + Sbjct: 292 LKLAEIELVKKIVKDYPVLLLDDVLSELDSGRQQHLLSGIRHIQTIITCTGLDDFVAHAF 351 Query: 359 NETAKFMRISNHQA 372 + + RI N Sbjct: 352 HID-RVFRIVNGTV 364 >gi|23500919|ref|NP_697046.1| recombination protein F [Brucella suis 1330] gi|161617994|ref|YP_001591881.1| recombination protein F [Brucella canis ATCC 23365] gi|163842280|ref|YP_001626684.1| recombination protein F [Brucella suis ATCC 23445] gi|254705188|ref|ZP_05167016.1| recombination protein F [Brucella suis bv. 3 str. 686] gi|254707296|ref|ZP_05169124.1| recombination protein F [Brucella pinnipedialis M163/99/10] gi|254709165|ref|ZP_05170976.1| recombination protein F [Brucella pinnipedialis B2/94] gi|256030689|ref|ZP_05444303.1| recombination protein F [Brucella pinnipedialis M292/94/1] gi|256158693|ref|ZP_05456572.1| recombination protein F [Brucella ceti M490/95/1] gi|256254094|ref|ZP_05459630.1| recombination protein F [Brucella ceti B1/94] gi|256368468|ref|YP_003105974.1| recombination protein F [Brucella microti CCM 4915] gi|260567346|ref|ZP_05837816.1| DNA replication and repair protein recF [Brucella suis bv. 4 str. 40] gi|261221234|ref|ZP_05935515.1| DNA replication and repair protein recF [Brucella ceti B1/94] gi|261314777|ref|ZP_05953974.1| DNA replication and repair protein recF [Brucella pinnipedialis M163/99/10] gi|261316662|ref|ZP_05955859.1| DNA replication and repair protein recF [Brucella pinnipedialis B2/94] gi|261755892|ref|ZP_05999601.1| DNA replication and repair protein recF [Brucella suis bv. 3 str. 686] gi|265987734|ref|ZP_06100291.1| DNA replication and repair protein recF [Brucella pinnipedialis M292/94/1] gi|265997195|ref|ZP_06109752.1| DNA replication and repair protein recF [Brucella ceti M490/95/1] gi|306843605|ref|ZP_07476206.1| DNA replication and repair protein RecF [Brucella sp. BO1] gi|38258604|sp|Q8G3E5|RECF_BRUSU RecName: Full=DNA replication and repair protein recF gi|23346772|gb|AAN28961.1| recF protein [Brucella suis 1330] gi|161334805|gb|ABX61110.1| DNA replication and repair protein RecF [Brucella canis ATCC 23365] gi|163673003|gb|ABY37114.1| DNA replication and repair protein RecF [Brucella suis ATCC 23445] gi|255998626|gb|ACU47025.1| recombination protein F [Brucella microti CCM 4915] gi|260156864|gb|EEW91944.1| DNA replication and repair protein recF [Brucella suis bv. 4 str. 40] gi|260919818|gb|EEX86471.1| DNA replication and repair protein recF [Brucella ceti B1/94] gi|261295885|gb|EEX99381.1| DNA replication and repair protein recF [Brucella pinnipedialis B2/94] gi|261303803|gb|EEY07300.1| DNA replication and repair protein recF [Brucella pinnipedialis M163/99/10] gi|261745645|gb|EEY33571.1| DNA replication and repair protein recF [Brucella suis bv. 3 str. 686] gi|262551663|gb|EEZ07653.1| DNA replication and repair protein recF [Brucella ceti M490/95/1] gi|264659931|gb|EEZ30192.1| DNA replication and repair protein recF [Brucella pinnipedialis M292/94/1] gi|306276296|gb|EFM57996.1| DNA replication and repair protein RecF [Brucella sp. BO1] Length = 384 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 165/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M R ++IN + D+L + R Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|306842702|ref|ZP_07475345.1| DNA replication and repair protein RecF [Brucella sp. BO2] gi|306287148|gb|EFM58650.1| DNA replication and repair protein RecF [Brucella sp. BO2] Length = 384 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 165/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M R ++IN + D+L + R Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRSLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|307276496|ref|ZP_07557616.1| recombination protein F [Enterococcus faecalis TX2134] gi|307287178|ref|ZP_07567249.1| recombination protein F [Enterococcus faecalis TX0109] gi|306501776|gb|EFM71067.1| recombination protein F [Enterococcus faecalis TX0109] gi|306506823|gb|EFM75973.1| recombination protein F [Enterococcus faecalis TX2134] gi|315165724|gb|EFU09741.1| recombination protein F [Enterococcus faecalis TX1302] Length = 375 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 167/376 (44%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQTVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q+AE G K+ AR+ + L QK + L++ D Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235 Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S AL+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ + Sbjct: 236 LSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356 I LA L+ + TG P+LLLD++ + LD +++ L + Q F+T T D Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKD 353 Query: 357 SLNETAKFMRISNHQA 372 L + + Sbjct: 354 KLTVEPDIFYVQQGKI 369 >gi|268318565|ref|YP_003292221.1| DNA replication and repair protein RecF [Lactobacillus johnsonii FI9785] gi|262396940|emb|CAX65954.1| DNA replication and repair protein RecF [Lactobacillus johnsonii FI9785] Length = 374 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 161/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + +FRN+ L++ FD IF+G N GKTN+LEAI FL+ R R S ++ Sbjct: 1 MYLANFELKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FA ++G + + ++L+ R + + +N + + + + Sbjct: 61 IRFGSK-----FAGLQGKIHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLALVKGAPSTRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + + Q+A + +I R++ I L+S + + KL + K D Sbjct: 176 VFLDVLSDQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVKEITPD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + ++ R + TL GPHR DL DK S G+Q+ + + Sbjct: 236 DDVETIYQKVITSYKKNRPNEIRKGTTLSGPHRDDLDFLINDKN-AHDFASQGQQRTISL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T PILLLD++ + LD ++++L + +Q F+T TD Sbjct: 295 SVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSSLLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + K IS Sbjct: 354 EIVKEPKVYHISAGTI 369 >gi|331092115|ref|ZP_08340946.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 2_1_46FAA] gi|330402316|gb|EGG81887.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 2_1_46FAA] Length = 361 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 164/372 (44%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + FRNY L L FD+ I GDN GKTNILEAI + R D+ Sbjct: 1 MIIKSLKLKNFRNYDLLNLDFDSATNILYGDNAQGKTNILEAIYLSGTTKSHRGTKDRDM 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S T +G+E DI +K S + + IN + IR EL + + Sbjct: 61 IRFGQEESHIETVIEKKGIEFKTDIHLK-----KNSPKGIAINKMPIRKASELFGVIHLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + +D + + ++ R++ RN+LL + Y Sbjct: 116 FFSPEDLNIIKNGPAERRRFIDMELSQLDKVYLNDLANYNRIINQRNKLLKDIYGREDLI 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + QMA G ++ R + I ++ +I K KL+L Sbjct: 176 STLDIWDMQMAHYGDRVMQRRAKFIAQINGIIENVHGKLTGGKEKLNLFYEKSIGD---- 231 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++++ + R+ D + T +GPHR D+ D I GS G+Q+ + + Sbjct: 232 ----ADFSEAILKNRERDIRMKSTSVGPHRDDICFKAGDLDIR-KFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ PILLLD++ + LD++++N L +++I + + TG D+ V Sbjct: 287 LSEIELVKLLINDTPILLLDDVLSELDKNRQNYLLDSISNIQTIVTCTGVDEFVNRRFLI 346 Query: 361 TAKFMRISNHQA 372 K ++ Q Sbjct: 347 N-KIFHVNGGQV 357 >gi|254718227|ref|ZP_05180038.1| recombination protein F [Brucella sp. 83/13] gi|265983183|ref|ZP_06095918.1| DNA replication and repair protein recF [Brucella sp. 83/13] gi|306839967|ref|ZP_07472761.1| DNA replication and repair protein RecF [Brucella sp. NF 2653] gi|264661775|gb|EEZ32036.1| DNA replication and repair protein recF [Brucella sp. 83/13] gi|306404931|gb|EFM61216.1| DNA replication and repair protein RecF [Brucella sp. NF 2653] Length = 384 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 165/371 (44%), Positives = 232/371 (62%), Gaps = 2/371 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M R ++IN + D+L + R Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D ++ RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRSLRDGRARDRVAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|116332685|ref|YP_794212.1| recombination protein F [Lactobacillus brevis ATCC 367] gi|122270619|sp|Q03UE1|RECF_LACBA RecName: Full=DNA replication and repair protein recF gi|116098032|gb|ABJ63181.1| DNA replication and repair protein RecF [Lactobacillus brevis ATCC 367] Length = 384 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 160/376 (42%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRNY + +L F + +G+N GKTN+LEAI L+ R R A+ D+ Sbjct: 1 MYLQELQLQQFRNYPTAKLTFGQGINVLLGENAQGKTNLLEAIYVLALTRSHRTANDHDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + A+V G A ++ LE R + ++N + + + L + Sbjct: 61 VNWQAKT-----AKVSGRVVKAAGAVPLELTFSRQGKRARVNHLEQARLSQYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P I G RRRF+D ++PR+ + + L++ RNR L + D Sbjct: 116 FAPEDLAIVKGAPTVRRRFMDMEFGQMNPRYLYNLSQYRTLLKQRNRYLKDLQHKQNKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + S + Q+A G +I R+ M+ L + + +L+ DQ Sbjct: 176 LFLSVLSDQLAAFGAEIIAQRLAMLQKLEHWAQAIHGEISQQREELTFHYATQVADDQLT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + + + TL+GPHR DL K + GS G+Q+ + Sbjct: 236 DVPTITAALSALYAKQQDKELYQGTTLVGPHRDDLHFQVNGKNV-QTFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG P+LLLD++ + LD+ ++ L + D Q F+T T S Sbjct: 295 VKLAEIDLMKEETGEYPVLLLDDVLSELDDARQTHLLTAIQDK-VQTFITTTSLSGITRQ 353 Query: 358 LNETAKFMRISNHQAL 373 L + ++ + Sbjct: 354 LIKDPTIFHVAEGTVV 369 >gi|229551100|ref|ZP_04439825.1| recombination protein F [Lactobacillus rhamnosus LMS2-1] gi|258538196|ref|YP_003172695.1| DNA replication and repair protein recF [Lactobacillus rhamnosus Lc 705] gi|229315561|gb|EEN81534.1| recombination protein F [Lactobacillus rhamnosus LMS2-1] gi|257149872|emb|CAR88844.1| DNA replication and repair protein recF [Lactobacillus rhamnosus Lc 705] Length = 372 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 155/373 (41%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNYA++ F + + +G+N GKTN+LEAI L+ R R + ++ Sbjct: 1 MKLDHLTLKNYRNYATVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G + +LE + +I+ + + + H + Sbjct: 61 IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + P++ + ++ ++ RN L + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + + +A G ++ AR +++ +S Q KL + Q Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAYQTQVTADLRQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E + + +L+GPHR D++ DK + GS G+Q+ + Sbjct: 236 DSEQVYEALGALFAKQQSREIEQGTSLVGPHRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAIQAK-VQTFLTTTSLDGIQKE 353 Query: 358 LNETAKFMRISNH 370 + ++ + Sbjct: 354 IITAPAIFQVQDG 366 >gi|225570328|ref|ZP_03779353.1| hypothetical protein CLOHYLEM_06425 [Clostridium hylemonae DSM 15053] gi|225160860|gb|EEG73479.1| hypothetical protein CLOHYLEM_06425 [Clostridium hylemonae DSM 15053] Length = 361 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 166/372 (44%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L + FRNY L+L FD IF GDN GKTNILE++ + R D+ Sbjct: 1 MKIKSLKLKSFRNYDFLKLEFDNATNIFYGDNAQGKTNILESVYLSGTTKSHRGTKDRDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G S T G+ D+ +K S + + IN + IR EL + I Sbjct: 61 VQFGKEESHIETVVEKNGITYQIDMHLK-----KNSPKGIAINKIPIRKASELFGIINIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + +D + + ++ R++ RN LL + + Sbjct: 116 FFSPEDLNIIKNGPSERRRFIDLELSQLDKVYLNNLSNYNRIVNQRNHLLKDITQQRNLM 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 E Q+ + G KI R + + ++ +I +K +++L ++ S Sbjct: 176 ETLDVWEIQLIQYGNKIIERRKQFVKEINKIISNIHKKLTGEKEEINLI------YEPSV 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L + + L R+ D + T +GPHR D+ D I GS G+Q+ + + Sbjct: 230 GNLT--FEQALAKNRERDMRIKSTSVGPHRDDICFMVGDLDIR-RFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ + P+LLLD++ + LD+ ++N L + DI + I TG D+ V + Sbjct: 287 LSEIELVKQSIHDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVDEFVNHRFSI 346 Query: 361 TAKFMRISNHQA 372 K + + Q Sbjct: 347 N-KVFHVQDGQV 357 >gi|258506999|ref|YP_003169750.1| DNA replication and repair protein recF [Lactobacillus rhamnosus GG] gi|257146926|emb|CAR85899.1| DNA replication and repair protein recF [Lactobacillus rhamnosus GG] gi|259648369|dbj|BAI40531.1| recombination protein RecF [Lactobacillus rhamnosus GG] Length = 372 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 155/373 (41%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNYA++ F + + +G+N GKTN+LEAI L+ R R + ++ Sbjct: 1 MKLDHLTLKNYRNYATVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G + +LE + +I+ + + + H + Sbjct: 61 IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + P++ + ++ ++ RN L + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + + +A G ++ AR +++ +S Q KL + Q Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAYQTQVAADLRQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E + + +L+GPHR D++ DK + GS G+Q+ + Sbjct: 236 DSEQVYEALGALFAKQQSREIEQGTSLVGPHRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAIQAK-VQTFLTTTSLDGIQKE 353 Query: 358 LNETAKFMRISNH 370 + ++ + Sbjct: 354 IITAPAIFQVQDG 366 >gi|254700821|ref|ZP_05162649.1| recombination protein F [Brucella suis bv. 5 str. 513] gi|261751327|ref|ZP_05995036.1| DNA replication and repair protein recF [Brucella suis bv. 5 str. 513] gi|261741080|gb|EEY29006.1| DNA replication and repair protein recF [Brucella suis bv. 5 str. 513] Length = 384 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 165/371 (44%), Positives = 230/371 (61%), Gaps = 2/371 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M R ++IN + D+L + R Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFIGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|29374665|ref|NP_813817.1| recombination protein F [Enterococcus faecalis V583] gi|227518105|ref|ZP_03948154.1| recombination protein F [Enterococcus faecalis TX0104] gi|227555688|ref|ZP_03985735.1| recombination protein F [Enterococcus faecalis HH22] gi|229547126|ref|ZP_04435851.1| recombination protein F [Enterococcus faecalis TX1322] gi|229550696|ref|ZP_04439421.1| recombination protein F [Enterococcus faecalis ATCC 29200] gi|255971552|ref|ZP_05422138.1| DNA replication and repair protein recF [Enterococcus faecalis T1] gi|255974525|ref|ZP_05425111.1| DNA replication and repair protein recF [Enterococcus faecalis T2] gi|256618524|ref|ZP_05475370.1| RecF protein [Enterococcus faecalis ATCC 4200] gi|256761857|ref|ZP_05502437.1| DNA replication and repair protein recF [Enterococcus faecalis T3] gi|256854984|ref|ZP_05560345.1| recombination protein F [Enterococcus faecalis T8] gi|256960821|ref|ZP_05564992.1| RecF protein [Enterococcus faecalis Merz96] gi|256963986|ref|ZP_05568157.1| RecF protein [Enterococcus faecalis HIP11704] gi|257078689|ref|ZP_05573050.1| RecF protein [Enterococcus faecalis JH1] gi|257081350|ref|ZP_05575711.1| recombination protein F [Enterococcus faecalis E1Sol] gi|257084007|ref|ZP_05578368.1| recombination protein F [Enterococcus faecalis Fly1] gi|257087837|ref|ZP_05582198.1| RecF protein [Enterococcus faecalis D6] gi|257088489|ref|ZP_05582850.1| recombination protein recF [Enterococcus faecalis CH188] gi|257418839|ref|ZP_05595833.1| recombination protein F recF [Enterococcus faecalis T11] gi|257421346|ref|ZP_05598336.1| recombination protein F [Enterococcus faecalis X98] gi|293382659|ref|ZP_06628587.1| DNA replication and repair protein RecF [Enterococcus faecalis R712] gi|293387929|ref|ZP_06632465.1| DNA replication and repair protein RecF [Enterococcus faecalis S613] gi|294781252|ref|ZP_06746599.1| DNA replication and repair protein RecF [Enterococcus faecalis PC1.1] gi|300861825|ref|ZP_07107905.1| DNA replication and repair protein RecF [Enterococcus faecalis TUSoD Ef11] gi|307268920|ref|ZP_07550284.1| recombination protein F [Enterococcus faecalis TX4248] gi|307274015|ref|ZP_07555225.1| recombination protein F [Enterococcus faecalis TX0855] gi|307284062|ref|ZP_07564232.1| recombination protein F [Enterococcus faecalis TX0860] gi|307296593|ref|ZP_07576413.1| recombination protein F [Enterococcus faecalis TX0411] gi|312901293|ref|ZP_07760576.1| recombination protein F [Enterococcus faecalis TX0470] gi|312903110|ref|ZP_07762291.1| recombination protein F [Enterococcus faecalis TX0635] gi|312908811|ref|ZP_07767750.1| recombination protein F [Enterococcus faecalis DAPTO 512] gi|312951717|ref|ZP_07770611.1| recombination protein F [Enterococcus faecalis TX0102] gi|312979547|ref|ZP_07791229.1| recombination protein F [Enterococcus faecalis DAPTO 516] gi|51316408|sp|Q839Z2|RECF_ENTFA RecName: Full=DNA replication and repair protein recF gi|29342123|gb|AAO79889.1| DNA replication and repair protein RecF [Enterococcus faecalis V583] gi|227074439|gb|EEI12402.1| recombination protein F [Enterococcus faecalis TX0104] gi|227175198|gb|EEI56170.1| recombination protein F [Enterococcus faecalis HH22] gi|229304129|gb|EEN70125.1| recombination protein F [Enterococcus faecalis ATCC 29200] gi|229307708|gb|EEN73695.1| recombination protein F [Enterococcus faecalis TX1322] gi|255962570|gb|EET95046.1| DNA replication and repair protein recF [Enterococcus faecalis T1] gi|255967397|gb|EET98019.1| DNA replication and repair protein recF [Enterococcus faecalis T2] gi|256598051|gb|EEU17227.1| RecF protein [Enterococcus faecalis ATCC 4200] gi|256683108|gb|EEU22803.1| DNA replication and repair protein recF [Enterococcus faecalis T3] gi|256709497|gb|EEU24544.1| recombination protein F [Enterococcus faecalis T8] gi|256951317|gb|EEU67949.1| RecF protein [Enterococcus faecalis Merz96] gi|256954482|gb|EEU71114.1| RecF protein [Enterococcus faecalis HIP11704] gi|256986719|gb|EEU74021.1| RecF protein [Enterococcus faecalis JH1] gi|256989380|gb|EEU76682.1| recombination protein F [Enterococcus faecalis E1Sol] gi|256992037|gb|EEU79339.1| recombination protein F [Enterococcus faecalis Fly1] gi|256995867|gb|EEU83169.1| RecF protein [Enterococcus faecalis D6] gi|256997301|gb|EEU83821.1| recombination protein recF [Enterococcus faecalis CH188] gi|257160667|gb|EEU90627.1| recombination protein F recF [Enterococcus faecalis T11] gi|257163170|gb|EEU93130.1| recombination protein F [Enterococcus faecalis X98] gi|291079965|gb|EFE17329.1| DNA replication and repair protein RecF [Enterococcus faecalis R712] gi|291082666|gb|EFE19629.1| DNA replication and repair protein RecF [Enterococcus faecalis S613] gi|294451715|gb|EFG20170.1| DNA replication and repair protein RecF [Enterococcus faecalis PC1.1] gi|295112343|emb|CBL30980.1| DNA replication and repair protein RecF [Enterococcus sp. 7L76] gi|300848350|gb|EFK76107.1| DNA replication and repair protein RecF [Enterococcus faecalis TUSoD Ef11] gi|306495929|gb|EFM65517.1| recombination protein F [Enterococcus faecalis TX0411] gi|306503433|gb|EFM72682.1| recombination protein F [Enterococcus faecalis TX0860] gi|306509323|gb|EFM78383.1| recombination protein F [Enterococcus faecalis TX0855] gi|306514728|gb|EFM83279.1| recombination protein F [Enterococcus faecalis TX4248] gi|310625249|gb|EFQ08532.1| recombination protein F [Enterococcus faecalis DAPTO 512] gi|310630290|gb|EFQ13573.1| recombination protein F [Enterococcus faecalis TX0102] gi|310633501|gb|EFQ16784.1| recombination protein F [Enterococcus faecalis TX0635] gi|311287729|gb|EFQ66285.1| recombination protein F [Enterococcus faecalis DAPTO 516] gi|311291670|gb|EFQ70226.1| recombination protein F [Enterococcus faecalis TX0470] gi|315026674|gb|EFT38606.1| recombination protein F [Enterococcus faecalis TX2137] gi|315030119|gb|EFT42051.1| recombination protein F [Enterococcus faecalis TX4000] gi|315033553|gb|EFT45485.1| recombination protein F [Enterococcus faecalis TX0017] gi|315143592|gb|EFT87608.1| recombination protein F [Enterococcus faecalis TX2141] gi|315148270|gb|EFT92286.1| recombination protein F [Enterococcus faecalis TX4244] gi|315151294|gb|EFT95310.1| recombination protein F [Enterococcus faecalis TX0012] gi|315153720|gb|EFT97736.1| recombination protein F [Enterococcus faecalis TX0031] gi|315155120|gb|EFT99136.1| recombination protein F [Enterococcus faecalis TX0043] gi|315158750|gb|EFU02767.1| recombination protein F [Enterococcus faecalis TX0312] gi|315163334|gb|EFU07351.1| recombination protein F [Enterococcus faecalis TX0645] gi|315168223|gb|EFU12240.1| recombination protein F [Enterococcus faecalis TX1341] gi|315573988|gb|EFU86179.1| recombination protein F [Enterococcus faecalis TX0309B] gi|315578842|gb|EFU91033.1| recombination protein F [Enterococcus faecalis TX0630] gi|315581939|gb|EFU94130.1| recombination protein F [Enterococcus faecalis TX0309A] gi|323479243|gb|ADX78682.1| DNA replication and repair protein recF [Enterococcus faecalis 62] gi|327533857|gb|AEA92691.1| recombination protein F [Enterococcus faecalis OG1RF] Length = 375 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 167/376 (44%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q+AE G K+ AR+ + L QK + L++ D Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235 Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S AL+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ + Sbjct: 236 LSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356 I LA L+ + TG P+LLLD++ + LD +++ L + Q F+T T D Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKD 353 Query: 357 SLNETAKFMRISNHQA 372 L + + Sbjct: 354 KLTVEPDIFYVQQGKI 369 >gi|220927463|ref|YP_002504372.1| DNA replication and repair protein RecF [Clostridium cellulolyticum H10] gi|254790470|sp|B8I3R5|RECF_CLOCE RecName: Full=DNA replication and repair protein recF gi|219997791|gb|ACL74392.1| DNA replication and repair protein RecF [Clostridium cellulolyticum H10] Length = 372 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 96/374 (25%), Positives = 171/374 (45%), Gaps = 12/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + +RN+ + R++F + IF GDNG GKTNILEAI + GR R + +++ Sbjct: 1 MIVKNLVLENYRNHTNTRILFSDRFNIFYGDNGQGKTNILEAIYLCASGRSHRTSRDSEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G +F S V GL D I++ + + ++IND+ I+ + L +L Sbjct: 61 IKFGCENF-SIAVHVSKTGGL-DKDIEISYY-ENQKKQIKINDIPIKKIGALMGNLYAVL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC- 183 P I ERRRF+D + I P + + ++++ RN LL + Sbjct: 118 FSPEDLFIVKQGPTERRRFVDITLSQIKPSYFYNLQQMSKILKQRNTLLKNISSNPKLMD 177 Query: 184 --SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQS 239 ++AE+ I AR LS + K+S Sbjct: 178 TVDIWNMRLAEVAAAIIKARRTFSIMLSGMAENQHNFLTGKSEKISFDYRCSFQISGQDD 237 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +++ Y +L + D + T +GPHR D + DK++ + +GS G+Q+ ++ + Sbjct: 238 TEQIEKLYLVQLEKSMQRDIVLGYTTVGPHRDDYDIMINDKSLKL-YGSQGQQRSAVLSL 296 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358 +A L+ T P+LLLD++ + LD++++ L + + Q F+T T+K F + L Sbjct: 297 KIAEIELVKKATNQYPVLLLDDVMSELDKNRQKYLMDSIKE--VQTFITCTNKEHFGNLL 354 Query: 359 NETAKFMRISNHQA 372 + + F +I Sbjct: 355 SANSNFFKIVGGNI 368 >gi|114704369|ref|ZP_01437277.1| DNA replication and repair protein [Fulvimarina pelagi HTCC2506] gi|114539154|gb|EAU42274.1| DNA replication and repair protein [Fulvimarina pelagi HTCC2506] Length = 385 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 167/375 (44%), Positives = 234/375 (62%), Gaps = 4/375 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + +I L + +FRNY L L F + +F G NG GKTN+LEA+S LSPGRG RRA Sbjct: 6 MGRQSEIGHLRLFDFRNYELLDLSFQKRFVVFAGPNGAGKTNLLEALSLLSPGRGLRRAP 65 Query: 61 YADVTRIGSPSFFSTFA--RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 Y ++ R G+ S FS A R+ E S++L+ S R ++I++ + +EL Sbjct: 66 YGEMARQGTQSGFSVKASVRIASEETTVVTSVRLDGEGPNS-RLVRIDETQAKSAEELLD 124 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 RI WL P+MD +F+G + +RRRFLDRMV +IDP H RR DFER MR RN+LL++ Sbjct: 125 IARIVWLTPAMDGLFTGPAGDRRRFLDRMVLSIDPTHGRRASDFERAMRSRNKLLSDNRI 184 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFD 237 D W + IE QMAELGV + +AR E++ L++ I FP L L+ GF +G D Sbjct: 185 DDRWLAGIEMQMAELGVAMAVARNELVANLTNAIALADPDLPFPKAGLVLSPGFEEGGLD 244 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +++ Y ++L R D+ + RTL GPHR+DL V + K + STGEQK +LV Sbjct: 245 GPAVQVEDRYRERLARDRYRDAGAGRTLEGPHRADLEVTHLAKHMPAGLSSTGEQKALLV 304 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 G+ +AHARL S +G APILLLDEI+AHLD +R +LF +V D+G Q FMTGTD+S+F++ Sbjct: 305 GLIIAHARLTSVLSGMAPILLLDEIAAHLDARRRASLFDLVGDLGGQTFMTGTDESLFEA 364 Query: 358 LNETAKFMRISNHQA 372 L + A+ + I++ Sbjct: 365 LGDRAQIITIADGAV 379 >gi|256957012|ref|ZP_05561183.1| RecF protein [Enterococcus faecalis DS5] gi|256947508|gb|EEU64140.1| RecF protein [Enterococcus faecalis DS5] gi|315036376|gb|EFT48308.1| recombination protein F [Enterococcus faecalis TX0027] Length = 375 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 167/376 (44%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+AE G K+ AR+ + L QK + L++ D + Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235 Query: 241 CALK---EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +L+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ + Sbjct: 236 LSLETLQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356 I LA L+ + TG P+LLLD++ + LD +++ L + Q F+T T D Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKD 353 Query: 357 SLNETAKFMRISNHQA 372 L + + Sbjct: 354 KLTVEPDIFYVQQGKI 369 >gi|257417429|ref|ZP_05594423.1| RecF protein [Enterococcus faecalis AR01/DG] gi|257159257|gb|EEU89217.1| RecF protein [Enterococcus faecalis ARO1/DG] Length = 375 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 167/376 (44%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 IGWEQAT-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q+AE G K+ AR+ + L QK + L++ D Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235 Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S AL+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ + Sbjct: 236 LSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356 I LA L+ + TG P+LLLD++ + LD +++ L + Q F+T T D Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKD 353 Query: 357 SLNETAKFMRISNHQA 372 L + + Sbjct: 354 KLTVEPDIFYVQQGKI 369 >gi|315650189|ref|ZP_07903264.1| recombination protein F [Eubacterium saburreum DSM 3986] gi|315487546|gb|EFU77854.1| recombination protein F [Eubacterium saburreum DSM 3986] Length = 363 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 165/370 (44%), Gaps = 19/370 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + ++RNY +L + IF GDN GKTNILE+I + + R + D+ Sbjct: 1 MIIESLELKDYRNYENLNIKLSTGVNIFYGDNAQGKTNILESIYLATTSKSHRGSKDKDI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + ++ M D S++++ + + + IN + IR + EL + Sbjct: 61 IRFGAGE-----SHIKLMIKRMDASVRMDMHIKKNKAKGVAINGIPIRKLSELFGTCNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---S 180 + P I ERR F+D + ++ + ++ + +++ RN+LL E F Sbjct: 116 FFSPEDLNIIKRSPKERRNFVDMELCQLNKVYVSTLVTYNKVLEQRNKLLKEIGFKTGLE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ + G + R E + L+ +I + + K+ + + + Sbjct: 176 DTLDIWDMQLIKYGTDLISYREEFVKKLNEVIFDIHSRLTGGE-KIKVIYEKNIE----- 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K+ + +L R D + T +GPHR D ++ GS G+Q+ + + + Sbjct: 230 ---KDNFEAELRKSRTNDIKYKTTNVGPHRDDFSFFLNNEMDLKKFGSQGQQRSLALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ LI G P+LLLD++ + LD +++ L + I + I TG + + SL + Sbjct: 287 LSEIELIKVRYGEFPVLLLDDVLSELDGKRQSHLLESIRHIQTLITCTGVEDFLNKSL-D 345 Query: 361 TAKFMRISNH 370 K ++N Sbjct: 346 IGKVFNVTNG 355 >gi|154483926|ref|ZP_02026374.1| hypothetical protein EUBVEN_01632 [Eubacterium ventriosum ATCC 27560] gi|149735417|gb|EDM51303.1| hypothetical protein EUBVEN_01632 [Eubacterium ventriosum ATCC 27560] Length = 362 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 169/372 (45%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + +S FRNY SL L D + I G N GKTN+LEAI S + R + A++ Sbjct: 1 MIVTKIELSNFRNYDSLSLELDDKTNILYGKNAQGKTNVLEAIYLCSTTKSHRSSKDAEL 60 Query: 65 TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + F +G E DI ++ + + IN + I+ EL + Sbjct: 61 IKFENNEGHIKLFINKKGREYRIDIHLR-----KNKSKGIAINGIPIKKASELFGIFNVI 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + +D + +I++ +++ RN+LL + Y Sbjct: 116 FFSPEDLDIIKNGPAERRRFVDMELCQLDKIYVYNLINYNKVLGQRNQLLKDIYMKPELE 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+AE G K+ R + I ++ +I +K ++ + D Sbjct: 176 DTLDVWDMQLAEYGSKVIKRREQFIKDINKIIKPIHRKLTENSEEIEVVYKKSCNED--- 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E K+ + RK D + T GPHR D++ D I +GS G+++ V + + Sbjct: 233 -----ELYNKIIENRKKDIKLKSTSAGPHRDDILFFNKDINIR-TYGSQGQKRTVALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ + P+LLLD++ + LD D++N L + + +I + I TG D+ + + + Sbjct: 287 LAEIELVKSLINDTPVLLLDDVLSELDSDRQNHLLKSLDEIQTVITCTGLDEFIENRFSI 346 Query: 361 TAKFMRISNHQA 372 K +++ + Sbjct: 347 N-KVFQVTKGKI 357 >gi|316931399|ref|YP_004106381.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris DX-1] gi|315599113|gb|ADU41648.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris DX-1] Length = 394 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 144/371 (38%), Positives = 203/371 (54%), Gaps = 4/371 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY S L A + VG NG GKTN LEA+S LSPGRG RRA D+ Sbjct: 20 RITRLTLTHFRNYRSASLTTTADQVVLVGPNGAGKTNCLEAVSLLSPGRGLRRARLEDIA 79 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ A VEG GLA + +E D + R +I+ + HLR+ Sbjct: 80 GHEGDGSWAVSAEVEGALGLATLGTGIEPPRGDVATTRRCRIDREPVGSAAAFGDHLRMV 139 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182 WL PSMD +F G + ERRRF DR+V AID H R+ +R +R RNRLL + DS W Sbjct: 140 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDIRNADSHW 199 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 +IE + AEL + + R + L+++I FP ++ L G+++ Sbjct: 200 LDAIERETAELAIAVAAQRGQTATKLAAMIDARGATSAFPSARIMLDGWMESALASEPAT 259 Query: 243 LKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + E+ Y L D R D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ L Sbjct: 260 VVEDRYRAVLRDNRSRDAAAGRTLDGPHLTDLEVIYAPKAMPAREASTGEQKALLIGLVL 319 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA+L++ TT P+LLLDE+ AHLD +R ALF ++ +G+Q++MTG D F + Sbjct: 320 AHAQLVAETTSITPLLLLDEVVAHLDPGRRAALFGELSRLGAQVWMTGADPLAFAEIGPA 379 Query: 362 AKFMRISNHQA 372 A + N + Sbjct: 380 AAIFDVDNGRI 390 >gi|229826861|ref|ZP_04452930.1| hypothetical protein GCWU000182_02245 [Abiotrophia defectiva ATCC 49176] gi|229788479|gb|EEP24593.1| hypothetical protein GCWU000182_02245 [Abiotrophia defectiva ATCC 49176] Length = 364 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 169/373 (45%), Gaps = 21/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK L +++FRN ++ + FD I GDN GKTNILE+I R + + ++ Sbjct: 1 MRIKSLALNDFRNIENISIEFDKGLNIIYGDNAQGKTNILESIYVAGTTRSHKGSKDKEM 60 Query: 65 TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++G + ++ D+ +K + + ++ + + ++ +++ Sbjct: 61 IKLGEDEAHIRIILEKDDLDRKIDMHLK-----KSKSKGVAVDGIPVHKSADIFGIVQLI 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P + ERRRF+D + I+ + + + +++ RN LL + +D+ Sbjct: 116 FFSPEDLSMIKDGPAERRRFIDMELSQIEKIYLYNLSKYNKILTQRNNLLKQISYDTGLS 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G++I +R + I+ L+ +I +K +L + + Sbjct: 176 DTLDVWDEQLVSTGLEIIKSRRKFISELNEIIKPIHEKLTGGKEELEIEY--------NP 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +E++ KL GR D + TL GP R D+ Y +K +GS G+Q+ + + Sbjct: 228 NVTEEDFKDKLKSGRNSDIYQKTTLTGPQRDDITF-YINKNDVRKYGSQGQQRSTALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359 L+ L TG PILLLD++ + LD ++N L + DI Q +T T F ++ Sbjct: 287 LSEIELFKKKTGDNPILLLDDVLSELDRSRQNYLIESIGDI--QTIITCTGLEEFVENKK 344 Query: 360 ETAKFMRISNHQA 372 + +I++ + Sbjct: 345 ADGRIYKINSGKI 357 >gi|293553550|ref|ZP_06674177.1| DNA replication and repair protein RecF [Enterococcus faecium E1039] gi|291602305|gb|EFF32530.1| DNA replication and repair protein RecF [Enterococcus faecium E1039] Length = 374 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 14/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY L F IF+G+N GKTN+LE+I L+ R R +S ++ Sbjct: 1 MRLNKLYLKNYRNYEELNTEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A ++G ++ LE + R +IN + + + + + Sbjct: 61 I-----GWTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + I+P + ++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238 + + Q+A G K+ AR + + L Q+ +++ +D Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITHQKEQLEIEYLTAVDSLETH 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++E++ L +K D T +GPHR DL K + +GS G+Q+ + Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA LI TG PILLLD++ + LD+ ++ L + Q F+T T + Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDSRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353 Query: 358 LNETAKFMRISNHQ 371 + + + + Sbjct: 354 MTVEPEIFYVQQGK 367 >gi|153854252|ref|ZP_01995551.1| hypothetical protein DORLON_01545 [Dorea longicatena DSM 13814] gi|149753027|gb|EDM62958.1| hypothetical protein DORLON_01545 [Dorea longicatena DSM 13814] Length = 374 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 21/376 (5%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + +K+ L + FRNY L + FD IF G+N GKTNILEA+ + R + Sbjct: 10 SELKVNSLKLKNFRNYDLLNVEFDGSTNIFYGNNAQGKTNILEAVYLSGTTKSHRGSKDR 69 Query: 63 DVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 D+ R G S T G+ D+ +K S + + IN + IR EL + Sbjct: 70 DMIRFGEDESHIETVVEKNGISYQIDMHLK-----KNSPKGIAINKMPIRKASELFGIVN 124 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GY 177 + + P I ERRRF+D + +D + + ++ R++ RN LL E G Sbjct: 125 LVFFSPEDLNIIKNGPAERRRFIDLELSQLDKVYLNNLSNYNRIVNQRNHLLKELSFGGK 184 Query: 178 FD-SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 D S E QM + G ++ R E + ++ +I + Q+ L + + Sbjct: 185 KDLSDTLEIWELQMVQYGERLIARRKEFVEQINGIIAKIHQRLTGGKESLKII------Y 238 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + S L + + L R+ D + T +GPHR D+ D I +GS G+Q+ Sbjct: 239 EPSTGDLP--FEQALNRYRERDLRMKSTTVGPHRDDIGFLIGDMDIR-KYGSQGQQRTAA 295 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + L+ L+ T PILLLD++ + LD+ ++N L + DI + I TG + V Sbjct: 296 LSLKLSEIELVKLATHDTPILLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVEDFVNH 355 Query: 357 SLNETAKFMRISNHQA 372 + K + N Q Sbjct: 356 RFSIN-KVFHVQNGQV 370 >gi|39933083|ref|NP_945359.1| recombination protein F [Rhodopseudomonas palustris CGA009] gi|39652708|emb|CAE25447.1| putative RecF protein [Rhodopseudomonas palustris CGA009] Length = 388 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 146/371 (39%), Positives = 204/371 (54%), Gaps = 4/371 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY L A + VG NG GKTN LEAISFLSPGRG RRA+ DV Sbjct: 14 RITRLTLTHFRNYRGASLTTTADQVVLVGPNGAGKTNCLEAISFLSPGRGLRRATLEDVA 73 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ +EG GLA + +E D + R +I+ + HLR+ Sbjct: 74 NHEGDGSWAVSTEIEGALGLATLGTGIEPPRGDTTTTRRCRIDREPVGSAAAFGDHLRMV 133 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182 WL PSMD +F G + ERRRF DR+V AID H R+ +R +R RNRLL + DS W Sbjct: 134 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDVRNADSHW 193 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 +IE + AEL + + R + L++++ FP KL L G+++ + Sbjct: 194 LDAIERETAELAIAVAAQRGQTALKLAAMLDARGATSAFPSAKLMLDGWMENALTSEPAT 253 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y L D R D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ L Sbjct: 254 AVEDRYRAILRDSRGRDAAAGRTLDGPHLTDLEVIYAPKAMPARDASTGEQKALLIGLVL 313 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA+L++ TT P+LLLDE+ AHLD +R ALF + +G+Q++MTG D F + Sbjct: 314 AHAQLVAETTSITPLLLLDEVVAHLDPGRREALFTELGKLGAQVWMTGADPMAFAEIGPA 373 Query: 362 AKFMRISNHQA 372 A + N Q Sbjct: 374 AGIFDVENGQI 384 >gi|199598230|ref|ZP_03211651.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus rhamnosus HN001] gi|199590833|gb|EDY98918.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus rhamnosus HN001] Length = 372 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 155/373 (41%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L++ +RNYA + F + + +G+N GKTN+LEAI L+ R R + ++ Sbjct: 1 MKLDHLSLKNYRNYAMVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G + +LE + +I+ + + + H + Sbjct: 61 IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + P++ + ++ ++ RN L + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + + +A G ++ AR +++ +S Q KL + Q Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAYQTQVAADLRQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + E + + +L+GPHR D++ DK + GS G+Q+ + Sbjct: 236 DSEQVYEALGALFAKQQSREIEQGTSLVGPHRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAIQAK-VQTFLTTTSLDGIQKE 353 Query: 358 LNETAKFMRISNH 370 + ++ + Sbjct: 354 IITAPAIFQVQDG 366 >gi|226309591|ref|YP_002769485.1| DNA replication and repair protein F [Brevibacillus brevis NBRC 100599] gi|254790466|sp|C0ZH40|RECF_BREBN RecName: Full=DNA replication and repair protein recF gi|226092539|dbj|BAH40981.1| DNA replication and repair protein F [Brevibacillus brevis NBRC 100599] Length = 372 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 88/375 (23%), Positives = 161/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L+++ +RNY ++ L FD +F+G+N GKTN LE+I L+ + R ++ Sbjct: 1 MFLKNLSLTNYRNYETMSLSFDGPIQLFIGNNAQGKTNALESIYVLALAKSHRTPRDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +A + S++LE + + +IN + + + L + Sbjct: 61 ISWDAD-----YATIRSDVLRRYGSVRLELQLTTKGKRAKINGMEQQKLSAYVGALNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P I G +RRRF+D + + P + + ++ +++ RN+LL + S Sbjct: 116 FAPEDLSIVKGAPAQRRRFIDMEIGQVSPTYLYYLSNYNKVLAQRNQLLKDLAMKKSNSL 175 Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + Q+A+L VK+ R E I L + E +LSL + Sbjct: 176 EMLAIWNTQLADLAVKLLRKRFEFIRKLETWAQEIHTGITDGRERLSLHYVNSSPVTEEM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++ + R + M TLIGPHR D + + + +GS G+Q+ + Sbjct: 236 TIDQAVDKMLAAYEEVRDREIMRGSTLIGPHRDDFSLKVNNMDV-QTYGSQGQQRTSALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357 I LA LI G P+LLLD++ + LDE ++ L + D Q F++ T Sbjct: 295 IKLAEIELIKEEVGEYPVLLLDDVLSELDEHRQTLLLETIQD-RVQTFVSTTGVEGLKHQ 353 Query: 358 LNETAKFMRISNHQA 372 + + A + + Sbjct: 354 VLQQASRFYVREGKI 368 >gi|254694809|ref|ZP_05156637.1| recombination protein F [Brucella abortus bv. 3 str. Tulya] gi|261215134|ref|ZP_05929415.1| DNA replication and repair protein recF [Brucella abortus bv. 3 str. Tulya] gi|260916741|gb|EEX83602.1| DNA replication and repair protein recF [Brucella abortus bv. 3 str. Tulya] Length = 384 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 166/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + FS A ++ M R ++IN + D+L + R Sbjct: 71 DDVARANAEGGFSIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINRIAA-SADDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|304392439|ref|ZP_07374380.1| DNA replication and repair protein RecF [Ahrensia sp. R2A130] gi|303295543|gb|EFL89902.1| DNA replication and repair protein RecF [Ahrensia sp. R2A130] Length = 391 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 11/378 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRNY +LRL+ D +H + G+NG GKTN+LEAISFLSPGRG RR SY V Sbjct: 11 VAITTLKLDHFRNYDTLRLLCDHRHVVLTGENGSGKTNLLEAISFLSPGRGLRRTSYDQV 70 Query: 65 TRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDR--SVRCLQINDVVIRVVDELN 117 + ++ A +E G I L+ + R + IN R ++L Sbjct: 71 AKADGSDSPRSGTWAVHAELETPAGELTIGTGLQRGPNGVDGQRRISINGAPKRTSEDLL 130 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 + LR+ WLVP+MD +F+G + +RRRFLDRMV AIDP H RR+ D+ER MR RN+LL E Sbjct: 131 ERLRVVWLVPAMDGLFTGAASDRRRFLDRMVLAIDPGHGRRVNDYERAMRSRNKLLDENR 190 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 D SW IEAQ+AE G I AR E++ LS FP +L L G L+ + Sbjct: 191 IDDSWLGGIEAQLAEQGTAIAFARSELVGLLSDHAAPENAS-PFPTARLLLEGALEEEIA 249 Query: 238 Q---SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + S +++ + +L R D + RTL GPHRS+L V + K + A STGEQK Sbjct: 250 RGEGSAADVEDSFRDRLSANRYRDRAAGRTLEGPHRSNLAVIHAPKNMAAALCSTGEQKA 309 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 +L G+ LAHA+L++ TG P+LLLDE +AHLD +R ALF ++ IG Q +MTGTD + Sbjct: 310 LLTGLVLAHAKLVAKLTGIPPVLLLDECAAHLDAQRRAALFDLIDTIGCQAWMTGTDAPL 369 Query: 355 FDSLNETAKFMRISNHQA 372 F++L + A++ + Sbjct: 370 FEALGDRAQYFTVHEGTV 387 >gi|315286765|ref|ZP_07872179.1| DNA replication and repair protein RecF [Listeria ivanovii FSL F6-596] gi|313630894|gb|EFR98586.1| DNA replication and repair protein RecF [Listeria ivanovii FSL F6-596] Length = 372 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 159/377 (42%), Gaps = 13/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEAI L+ + R + D Sbjct: 1 MFLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAILMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG ++ LE + + +IN + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIVKRGQTVPLELTITQKGKRAKINHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNKYLKMLQLKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIRKLEAYAAPIHNQISRGLETLKIEYKASVTLTGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + I Sbjct: 236 PKVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHDT 353 Query: 359 NETAKFMRISNHQALCI 375 + A + I Sbjct: 354 LKQATTFHVEKGTVKKI 370 >gi|17988224|ref|NP_540858.1| recombination protein F [Brucella melitensis bv. 1 str. 16M] gi|62288994|ref|YP_220787.1| recombination protein F [Brucella abortus bv. 1 str. 9-941] gi|82698935|ref|YP_413509.1| recombination protein F [Brucella melitensis biovar Abortus 2308] gi|189023271|ref|YP_001934039.1| recombination protein F [Brucella abortus S19] gi|225851549|ref|YP_002731782.1| recombination protein F [Brucella melitensis ATCC 23457] gi|237814484|ref|ZP_04593482.1| DNA replication and repair protein RecF [Brucella abortus str. 2308 A] gi|254690320|ref|ZP_05153574.1| recombination protein F [Brucella abortus bv. 6 str. 870] gi|254696437|ref|ZP_05158265.1| recombination protein F [Brucella abortus bv. 2 str. 86/8/59] gi|254731349|ref|ZP_05189927.1| recombination protein F [Brucella abortus bv. 4 str. 292] gi|256045793|ref|ZP_05448671.1| recombination protein F [Brucella melitensis bv. 1 str. Rev.1] gi|256112512|ref|ZP_05453433.1| recombination protein F [Brucella melitensis bv. 3 str. Ether] gi|256258574|ref|ZP_05464110.1| recombination protein F [Brucella abortus bv. 9 str. C68] gi|256264942|ref|ZP_05467474.1| recombination protein F [Brucella melitensis bv. 2 str. 63/9] gi|260546288|ref|ZP_05822028.1| recombination protein F [Brucella abortus NCTC 8038] gi|260563086|ref|ZP_05833572.1| recombination protein F [Brucella melitensis bv. 1 str. 16M] gi|260755859|ref|ZP_05868207.1| DNA replication and repair protein recF [Brucella abortus bv. 6 str. 870] gi|260759082|ref|ZP_05871430.1| DNA replication and repair protein recF [Brucella abortus bv. 4 str. 292] gi|260760808|ref|ZP_05873151.1| DNA replication and repair protein recF [Brucella abortus bv. 2 str. 86/8/59] gi|260884884|ref|ZP_05896498.1| DNA replication and repair protein recF [Brucella abortus bv. 9 str. C68] gi|265992208|ref|ZP_06104765.1| DNA replication and repair protein recF [Brucella melitensis bv. 1 str. Rev.1] gi|265993948|ref|ZP_06106505.1| DNA replication and repair protein recF [Brucella melitensis bv. 3 str. Ether] gi|297247411|ref|ZP_06931129.1| DNA replication and repair protein recF [Brucella abortus bv. 5 str. B3196] gi|20978586|sp|Q8YED7|RECF_BRUME RecName: Full=DNA replication and repair protein recF gi|81309491|sp|Q57G08|RECF_BRUAB RecName: Full=DNA replication and repair protein recF gi|97180679|sp|Q2YPM3|RECF_BRUA2 RecName: Full=DNA replication and repair protein recF gi|17983989|gb|AAL53122.1| recf protein [Brucella melitensis bv. 1 str. 16M] gi|62195126|gb|AAX73426.1| RecF, recF protein [Brucella abortus bv. 1 str. 9-941] gi|82615036|emb|CAJ09959.1| RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella melitensis biovar Abortus 2308] gi|189018843|gb|ACD71565.1| recombination protein F [Brucella abortus S19] gi|225639914|gb|ACN99827.1| DNA replication and repair protein RecF [Brucella melitensis ATCC 23457] gi|237789321|gb|EEP63531.1| DNA replication and repair protein RecF [Brucella abortus str. 2308 A] gi|260096395|gb|EEW80271.1| recombination protein F [Brucella abortus NCTC 8038] gi|260153102|gb|EEW88194.1| recombination protein F [Brucella melitensis bv. 1 str. 16M] gi|260669400|gb|EEX56340.1| DNA replication and repair protein recF [Brucella abortus bv. 4 str. 292] gi|260671240|gb|EEX58061.1| DNA replication and repair protein recF [Brucella abortus bv. 2 str. 86/8/59] gi|260675967|gb|EEX62788.1| DNA replication and repair protein recF [Brucella abortus bv. 6 str. 870] gi|260874412|gb|EEX81481.1| DNA replication and repair protein recF [Brucella abortus bv. 9 str. C68] gi|262764929|gb|EEZ10850.1| DNA replication and repair protein recF [Brucella melitensis bv. 3 str. Ether] gi|263003274|gb|EEZ15567.1| DNA replication and repair protein recF [Brucella melitensis bv. 1 str. Rev.1] gi|263095427|gb|EEZ19028.1| recombination protein F [Brucella melitensis bv. 2 str. 63/9] gi|297174580|gb|EFH33927.1| DNA replication and repair protein recF [Brucella abortus bv. 5 str. B3196] gi|326408014|gb|ADZ65079.1| recombination protein F [Brucella melitensis M28] gi|326537732|gb|ADZ85947.1| DNA replication and repair protein RecF [Brucella melitensis M5-90] Length = 384 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 165/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M R ++IN + D+L + R Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINRIAA-SADDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|191636828|ref|YP_001985994.1| recombination protein F [Lactobacillus casei BL23] gi|301065130|ref|YP_003787153.1| recombinational DNA repair ATPase [Lactobacillus casei str. Zhang] gi|226737807|sp|B3W6Q9|RECF_LACCB RecName: Full=DNA replication and repair protein recF gi|190711130|emb|CAQ65136.1| DNA replication and repair protein recF [Lactobacillus casei BL23] gi|300437537|gb|ADK17303.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus casei str. Zhang] gi|327380866|gb|AEA52342.1| DNA replication and repair protein recF [Lactobacillus casei LC2W] gi|327384031|gb|AEA55505.1| DNA replication and repair protein recF [Lactobacillus casei BD-II] Length = 371 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 153/373 (41%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNYA++ F + + +G N GKTN+LE+I L+ R R + ++ Sbjct: 1 MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G S +LE + +I+ + + + H + Sbjct: 61 IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + P++ + ++ ++ RN L + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + + +A G ++ AR +++ +S Q L + +D Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSYQTQVDPSLRG 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + + + +L+GP R D++ DK + GS G+Q+ + Sbjct: 236 DSEQVYTALGEMFAKQQAREIEQGTSLVGPQRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTTSLEGIQKE 353 Query: 358 LNETAKFMRISNH 370 + T ++ Sbjct: 354 IIATPAVFKVDEG 366 >gi|116493578|ref|YP_805312.1| recombination protein F [Lactobacillus casei ATCC 334] gi|227533503|ref|ZP_03963552.1| recombination protein F [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|122264959|sp|Q03D52|RECF_LACC3 RecName: Full=DNA replication and repair protein recF gi|116103728|gb|ABJ68870.1| DNA replication and repair protein RecF [Lactobacillus casei ATCC 334] gi|227188832|gb|EEI68899.1| recombination protein F [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 371 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 154/373 (41%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNYA++ F + + +G N GKTN+LE+I L+ R R + ++ Sbjct: 1 MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G S +LE + +I+ + + + H + Sbjct: 61 IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + P++ + ++ ++ RN L + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + + +A G ++ AR +++ +S Q L + +D Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSYQTQVDPSLRG 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + + + + +L+GP R D++ DK + GS G+Q+ + Sbjct: 236 NSEQVYTALGEMFAKQQAREIEQGTSLVGPQRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTTSLEGIQKE 353 Query: 358 LNETAKFMRISNH 370 + T ++ Sbjct: 354 IIATPAVFKVDEG 366 >gi|313635494|gb|EFS01731.1| DNA replication and repair protein RecF [Listeria seeligeri FSL N1-067] Length = 370 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 158/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MLLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG ++ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIVKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + Sbjct: 176 MLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHSQISRGLETLKIEYKASVTLAGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + + Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D + Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHNT 353 Query: 359 NETAKFMRISNHQA 372 + A + Sbjct: 354 LKQATTFYVEKGTV 367 >gi|296131554|ref|YP_003638801.1| DNA replication and repair protein RecF [Thermincola sp. JR] gi|296030132|gb|ADG80900.1| DNA replication and repair protein RecF [Thermincola potens JR] Length = 368 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 99/372 (26%), Positives = 176/372 (47%), Gaps = 12/372 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + FRNY +L L F + +FVGDN GKTNILEAI + GR R AD+ Sbjct: 1 MLIDKIALLNFRNYQTLTLSFHDKLNLFVGDNAQGKTNILEAIYYSGTGRSHRTNKDADL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + ++F E + G + I L + +++N V + ++ +++ Sbjct: 61 IKWN-ENYFILKISGENLHGRFVLEIGLNREGKKK---IKLNGVQKKRTGDILGTVKVIL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P + G + RR+F+D + I P + ++ ++R++ RN LL + + + Sbjct: 117 FSPEDLTLVKGSPVVRRKFIDTEISQISPGYYYNLLKYQRILVQRNALLKDIKMNKNLAD 176 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS--LTGFLDGKFDQS 239 S + Q+A G K+ +++++ L+ L +K +L + K + S Sbjct: 177 NLSVWDRQLALFGAKLIYKKLDVLKKLTPLTRLMHRKITNGKEELETRYISNVVDKDNLS 236 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +++ + +K+ R + T+IGPHR DL+ K + +GS G+Q+ + I Sbjct: 237 LEEIEKLFLEKIAANRDEELDRGITIIGPHRDDLVFYINGKEVK-HYGSQGQQRSCSLSI 295 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358 LA L+ TG P+LLLD++ + LDED+R L V Q F+T TD S+ ++L Sbjct: 296 KLAELELVKGETGEYPLLLLDDVMSELDEDRRQYLLESVQSK-IQTFITTTDASLLAENL 354 Query: 359 NETAKFMRISNH 370 + A + Sbjct: 355 KKNASLFTVREG 366 >gi|153815426|ref|ZP_01968094.1| hypothetical protein RUMTOR_01661 [Ruminococcus torques ATCC 27756] gi|317500888|ref|ZP_07959100.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 8_1_57FAA] gi|331089210|ref|ZP_08338112.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 3_1_46FAA] gi|145847285|gb|EDK24203.1| hypothetical protein RUMTOR_01661 [Ruminococcus torques ATCC 27756] gi|316897768|gb|EFV19827.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 8_1_57FAA] gi|330405762|gb|EGG85291.1| DNA replication and repair protein recF [Lachnospiraceae bacterium 3_1_46FAA] Length = 362 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 99/373 (26%), Positives = 162/373 (43%), Gaps = 18/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L L FD + I GDN GKTNILEA+ + R DV Sbjct: 1 MVIKSLKLKNYRNYDLLDLKFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDRDV 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G S T ++ D+ +K S + + I+ V IR EL + Sbjct: 61 IQFGYDESHIETIIEKRNIDFQIDMHLK-----KNSPKGIAIDKVPIRRAGELFGIVHFV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I RRRF+D + +D + + ++ R++ RN LL + Y + Sbjct: 116 FFSPEDLNIIKEGPAGRRRFIDLELSQLDKIYLNNLSNYNRIINQRNSLLKDIYGQRNLI 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+AE G KI R + I ++ +I + K +++LT ++ S Sbjct: 176 ETLDIWDMQLAEYGKKILERRKQFIKQVNDIIADIHYKLTGGKERITLT------YESSL 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + L R+ D + T +GPHR D+ GS G+Q+ + + Sbjct: 230 GNIT--FETALSKYRERDLRMKSTTVGPHRDDICFTTDAGLDIRKFGSQGQQRTAALSLK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ PILLLD++ + LD+ ++N L + +I + I TG D+ V + Sbjct: 288 LSEIELVKEELNDTPILLLDDVLSELDKHRQNYLLDSIDNIQTIITCTGLDEFVNHRFSI 347 Query: 361 TAKFMRISNHQAL 373 K I N A+ Sbjct: 348 N-KIFHIKNGHAV 359 >gi|158319063|ref|YP_001511570.1| DNA replication and repair protein RecF [Alkaliphilus oremlandii OhILAs] gi|166918719|sp|A8MEA3|RECF_ALKOO RecName: Full=DNA replication and repair protein recF gi|158139262|gb|ABW17574.1| DNA replication and repair protein RecF [Alkaliphilus oremlandii OhILAs] Length = 365 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 167/371 (45%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RNY + L F + +F+GDN GKTN++E+I S G+ FR ++ Sbjct: 1 MIVEELKLINYRNYEQMNLKFHPRLNVFIGDNAQGKTNLIESIYLCSAGKSFRTNHDQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + +V+ + I ++L + + L++N + + + EL +L + Sbjct: 61 INMNKKQAY-IHVKVKKVHSDVHIEVRL---NSERKKDLKVNQIPLVKMGELLGNLNVVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P ++ ERRRF+DR + I + + + ++++ RN+LL Sbjct: 117 FSPEDLKLVKEGPSERRRFMDREISQISTKFYYTLSQYNKILQHRNKLLKYNKGKEIDIE 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+A G + + R I +S L +K E+ ++++ + K + Sbjct: 177 VWDEQLAAAGAWLIVYRRNFIKKISILAKLMHRKITESIENLEVIYEPNVKVKENDEVDV 236 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +KE+ + L + +D T GPHR D+I+ + +GS G+Q+ ++ + LA Sbjct: 237 IKEKILQNLKENFNVDKQRGLTTCGPHRDDMILKINGLDVK-TYGSQGQQRTAVLSLKLA 295 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NET 361 L+ G PILLLD++ + LD +++ L + Q F+T T L E Sbjct: 296 ELELVKGEVGEYPILLLDDVMSELDSKRQHYLIHNLKS--VQTFITTTMMETLKDLKPED 353 Query: 362 AKFMRISNHQA 372 ++ Q Sbjct: 354 RAVFYVNKGQI 364 >gi|154503046|ref|ZP_02040106.1| hypothetical protein RUMGNA_00868 [Ruminococcus gnavus ATCC 29149] gi|153796287|gb|EDN78707.1| hypothetical protein RUMGNA_00868 [Ruminococcus gnavus ATCC 29149] Length = 361 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 103/372 (27%), Positives = 168/372 (45%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L + FD++ I GDN +GKTNILEA+ + R D+ Sbjct: 1 MVIKSLKLKNYRNYELLDMTFDSKTNILYGDNALGKTNILEALYLSGTTKSHRGTKDRDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G S T +GME D+ +K S + + IN + IR EL + Sbjct: 61 IQFGREESHLETIVEKKGMEFQIDMHLK-----KNSPKGIAINKIPIRKASELFGIVHFV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I RRRF+D + ID + + ++ R++ RN LL E Y Sbjct: 116 FFSPEDLNIIKDGPAGRRRFIDLELSQIDKVYLSNLSNYNRIINQRNSLLKELYHQDHLM 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+AE G K+ +R + I ++ +I + + ++ L+ ++ S Sbjct: 176 DTLDIWDMQLAEYGTKVIESRKQFIRQVNQIIADIHYRLTGGRERIELS------YESSL 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +L + L R+ D + T +GPHR DL D I GS G+Q+ + + Sbjct: 230 GSLS--LEQALKKNRERDIRMKSTSVGPHRDDLCFLSGDLDIR-KFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ PILLLD++ + LD+ ++N L + DI + I TG D+ V + Sbjct: 287 LSEIELVKEVIKDTPILLLDDVLSELDKHRQNYLLDSIHDIQTVITCTGLDEFVNHRFSI 346 Query: 361 TAKFMRISNHQA 372 K R+S+ Sbjct: 347 N-KIFRVSSGSV 357 >gi|168187274|ref|ZP_02621909.1| DNA replication and repair protein RecF [Clostridium botulinum C str. Eklund] gi|169294762|gb|EDS76895.1| DNA replication and repair protein RecF [Clostridium botulinum C str. Eklund] Length = 361 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 168/370 (45%), Gaps = 13/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + FRNY L L + +F+GDN GKTNILE+I + S G+ R ++ Sbjct: 1 MYIKNLELINFRNYERLSLNLHSGINVFIGDNAQGKTNILESIYYCSIGKSHRTNKDKEL 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G+ ++ S + E ++ DI I E + +++N + ++ + +L + Sbjct: 61 IKWGARDAYISIYVSKERLDKKIDIKIFKE-----GKKGVRVNSIKLKTISDLIGVFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P +I RR+FLD + ++ ++ ++ + +++ RN +L + + Sbjct: 116 MFSPEDLKIIKESPSYRRKFLDIELSKLNKKYYHSLVIYNKVLNERNTILRKWNSNKEVT 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++ G I R++ I +LS + + + K + Sbjct: 176 EVYDYQLSKYGSYIIKERLKYIESLSLRGNKIHKDITSQKENIEFKYITSIK---DLSNI 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + ++ L K D T GPHR D V+ I +GS G+Q+ ++ I LA Sbjct: 233 QNDFYNILRQNIKKDFEKGSTSFGPHRDDFAVNINATDTRI-YGSQGQQRTAVLTIKLAS 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETA 362 +I TG P+LLLD++ + LD +++ + + + Q +TGT + + L++ Sbjct: 292 LEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIREF--QTIITGTGLIDIREYLDDHV 349 Query: 363 KFMRISNHQA 372 K +++N Sbjct: 350 KLFKVTNGTV 359 >gi|313640122|gb|EFS04741.1| DNA replication and repair protein RecF [Listeria seeligeri FSL S4-171] Length = 370 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 158/374 (42%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MLLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG ++ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIVKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + Sbjct: 176 LLLDILTEQFADVAINLTKRRADFIRKLEAYAAPIHSQISRGLETLKIEYKASVTLAGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + + Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 LA LI TG P+LLLD++ + LD+ +++ L + Q F+T T S D + Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHNT 353 Query: 359 NETAKFMRISNHQA 372 + A + Sbjct: 354 LKQATTFHVEKGTV 367 >gi|239630808|ref|ZP_04673839.1| DNA replication and repair protein recF [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527091|gb|EEQ66092.1| DNA replication and repair protein recF [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 371 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 153/373 (41%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +RNYA++ F + + +G N GKTN+LE+I L+ R R + ++ Sbjct: 1 MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FARV G S +LE + +I+ + + + H + Sbjct: 61 IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRF+D + P++ + ++ ++ RN L + D Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + + +A G ++ AR +++ +S Q L + +D Sbjct: 176 VYLDVLTDSLAVFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSYQTQVDPSLRG 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + + + +L+GP R D++ DK + GS G+Q+ + Sbjct: 236 DSEQVYTALGEMFAKQQAREIEQGTSLVGPQRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ + TG P+LLLD++ + LD ++ L + + Q F+T T Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTTSLEGIQKE 353 Query: 358 LNETAKFMRISNH 370 + T ++ Sbjct: 354 IIATPAVFKVDEG 366 >gi|153811990|ref|ZP_01964658.1| hypothetical protein RUMOBE_02383 [Ruminococcus obeum ATCC 29174] gi|149831889|gb|EDM86975.1| hypothetical protein RUMOBE_02383 [Ruminococcus obeum ATCC 29174] Length = 362 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 90/374 (24%), Positives = 156/374 (41%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + FRNY L+L FD IF GDN GKTNILE++ + + + ++ Sbjct: 1 MYIESIELKNFRNYQDLQLDFDKGTNIFYGDNAQGKTNILESVYICGTTKSHKGSKDKEI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 R G + + M ++S K++ + + + IN + I+ EL + + Sbjct: 61 IRFGEEE-----SHIRMMVKKDELSYKIDMHLRKNKAKGVAINGLRIKKARELFGIVNLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + +D + + + ++ RNRLL + Y + S Sbjct: 116 FFSPEDLNIIKNGPGERRRFMDLELCQLDQIYLTDLAGYNHIVNQRNRLLKDLYQNPSLR 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + QM + G KI R + + L+ +I + + L + Sbjct: 176 ETLEIWDIQMLQYGKKIIEKRRDFVRDLNDVIQDIHRNLTGGEEHLEVIY--------EP 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E + + L R+ D + T GPHR DL I GS G+Q+ + + Sbjct: 228 STESECFEETLKKNRERDMRMKMTSAGPHRDDLCFMVNGIDIR-KFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359 L+ L+ PILLLD++ + LD +++ L + DI Q +T T F Sbjct: 287 LSEIYLVKEKIKDTPILLLDDVLSELDSNRQTYLLDSIHDI--QTLITCTGLDDFVSHQF 344 Query: 360 ETAKFMRISNHQAL 373 K ++ + Sbjct: 345 HINKVFKVVKGEVF 358 >gi|238855509|ref|ZP_04645814.1| DNA replication and repair protein RecF [Lactobacillus jensenii 269-3] gi|282931535|ref|ZP_06337034.1| DNA replication and repair protein RecF [Lactobacillus jensenii 208-1] gi|238831875|gb|EEQ24207.1| DNA replication and repair protein RecF [Lactobacillus jensenii 269-3] gi|281304342|gb|EFA96445.1| DNA replication and repair protein RecF [Lactobacillus jensenii 208-1] Length = 374 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 152/374 (40%), Gaps = 15/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + +RN+ L F IF+G N GKTN+LEA+ FL+ R R S ++ Sbjct: 1 MYLKQLKLQNWRNFEELETGFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + + G + + L+ R + + IN + + L Sbjct: 61 IRFGQKAAI-----LSGHVVKSQVETDLQVRINAKGKKAWINRIEQSKLSRYVGQLTAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+P + + ++++ +N L + D Sbjct: 116 FSPEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A L +I R++ + LS + + +L + Sbjct: 176 VFLEVLSDQLAGLAAEIISRRLKYLTYLSEYAKKAYAAISNEKEQLEVVYNPSVPLTSEQ 235 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + Y + L + + TL GPHR DL DK + S G+Q+ + + Sbjct: 236 ITSESIYHEVLACFKKNEAGEIRTGTTLSGPHRDDLKF-LLDKKDAHLYASQGQQRTIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +LI TG P LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SLKLAEIQLIHQITGEYPALLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNH 370 + + K R+ Sbjct: 354 EIVKKPKIFRLKAG 367 >gi|291548765|emb|CBL25027.1| recF protein [Ruminococcus torques L2-14] Length = 363 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 161/374 (43%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L L FD + I GDN GKTNILEA+ + R D+ Sbjct: 1 MIIKSLKLKNYRNYDLLDLTFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDRDM 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G S T +G+ D+ +K S + + I+ V IR EL + Sbjct: 61 IQFGYDESHLETVVEKKGIIFQIDMHLK-----KNSPKGIAIDKVPIRRASELFGIVHFV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I RRRF+D + +D + + ++ R++ RN LL + Y + Sbjct: 116 FFSPEDLNIIKEGPAGRRRFIDLELSQLDKIYLNNLSNYNRIINQRNSLLKDIYGSNQQH 175 Query: 183 ----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + Q+A G K+ R E + ++ +I E + +LSLT Sbjct: 176 LLETLDIWDMQLAAYGTKVLDRRKEFVRQVNEIISEIHFRLTGGKERLSLTYESSIG--- 232 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + L R+ D + T +GPHR DL D I GS G+Q+ + Sbjct: 233 -----EMSMEQALKKNRERDLRMKSTSVGPHRDDLCFLSGDLDIR-KFGSQGQQRTAALS 286 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA L+ G PILLLD++ + LD++++N L + DI + I TG D+ V Sbjct: 287 LKLAEIELVKRIIGDTPILLLDDVLSELDKNRQNYLLDSIHDIQTVITCTGLDEFVNHRF 346 Query: 359 NETAKFMRISNHQA 372 + K + + Sbjct: 347 SIN-KIFHVKSGHV 359 >gi|313904728|ref|ZP_07838102.1| DNA replication and repair protein RecF [Eubacterium cellulosolvens 6] gi|313470521|gb|EFR65849.1| DNA replication and repair protein RecF [Eubacterium cellulosolvens 6] Length = 362 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 161/372 (43%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY + L FD+ + GDN GKTN+LEAI L + + + +++ Sbjct: 1 MHVESLELKNFRNYERIVLDFDSGTNVLYGDNAQGKTNLLEAIHVLGTTKSHKGSHDSEM 60 Query: 65 TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G R G+ D+ +K + + I+ + IR +L + I Sbjct: 61 IRFGEDEAHMRLIFRKNGIAHKVDMHLK-----KNGKKGVAIDGLPIRKAADLFGMINIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 P I ERRRFLD + +D + + + D+ R++ RN LL + F+ S Sbjct: 116 LFSPEDLNIIKHGPKERRRFLDSELCQLDKIYYQNLADYNRILVQRNALLKDIPFNPSLE 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ LG I R L+ +++ + ++ + D Sbjct: 176 PTLDVWDMQLIRLGSHIIEQRSRFTRKLNEIVVGIHENLTGGREQIEIIYEPDV------ 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 EE+ +KL GR D + + GPHR D V I GS G+Q+ + + Sbjct: 230 --TAEEFEEKLTRGRPRDLKLKTSGTGPHRDDFRVQVNGIDIR-HFGSQGQQRSAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ G P+LLLD++ + LD +++ L + + DI + I TG D+ + ++ Sbjct: 287 LSEIYLVKEMIGDTPVLLLDDVLSELDRNRQKTLLQNMNDIQTLITCTGLDELIENNFPV 346 Query: 361 TAKFMRISNHQA 372 + I N Sbjct: 347 N-RAFHIVNGSV 357 >gi|291521104|emb|CBK79397.1| DNA replication and repair protein RecF [Coprococcus catus GD/7] Length = 365 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 157/372 (42%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RNY L + IF GDN GKTN+LEA+ + + R + ++ Sbjct: 1 MYVESLALENYRNYVHLSVNLSPGINIFFGDNAQGKTNVLEALYMCATTKSHRGSRDREI 60 Query: 65 TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G E + D+ +K + + I+ + IR EL + + Sbjct: 61 IRFGEEEAHIRMLLSKEHVRHKIDVHLK-----KNKSKGIAIDGIPIRKSGELFGLVHMI 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 P + ERRRFLD + +D + + ++ +++ RN LL + FDS+ Sbjct: 116 CFSPEDLAMIKNGPGERRRFLDLELCQLDKVYLHNISNYNKIVNQRNNLLKQIGFDSALK 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + QM G K+ R I L+ + + + KL L + Sbjct: 176 DTLDIWDMQMVNYGRKVIETRRLFIAQLNEWLEQIHGRLTGNREKLRLVYQPSTE----- 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E++ + L R D + + GPHR D + + I GS G+Q+ + + Sbjct: 231 ---PEDFERVLLSKRDQDIRMKMSGTGPHRDDFLFMVGEVDIR-KFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ + G P+LLLD++ + LD ++N L + DI + I TG D+ V N Sbjct: 287 LAEIELVRQSIGDEPVLLLDDVLSELDSSRQNYLLDCIKDIQTVITCTGLDEFVNHRFNI 346 Query: 361 TAKFMRISNHQA 372 + ++++ Sbjct: 347 D-RIFKVTDGTV 357 >gi|315640353|ref|ZP_07895469.1| recombination protein F [Enterococcus italicus DSM 15952] gi|315483889|gb|EFU74369.1| recombination protein F [Enterococcus italicus DSM 15952] Length = 373 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 86/372 (23%), Positives = 161/372 (43%), Gaps = 11/372 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + FRNY L+L F IF+G+N GKTN+LE+I L+ R R + ++ Sbjct: 1 MRLNSLTLRHFRNYDELQLPFAKDLIIFLGENAQGKTNLLESIYVLAMTRSHRTTNEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A + G+ +I LE + R ++N + + + L + Sbjct: 61 IEWDCAE-----AYLAGVVEKKQQTIPLELGLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+FLD + ID + ++ ++++++ RN+ L + D Sbjct: 116 FAPEDLSLVKGTPQLRRKFLDMEIGQIDSVYLYNLVQYQQVLKQRNQYLKQLAEKKQTDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239 + + Q+ G KI R+ + L + Q + L+L F++ + Sbjct: 176 LYLDILTEQLVTFGSKILWTRINFVKKLEYWANQLHQLISQEKETLTLHYDATVAFEEAN 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++ Y++ R + + TLIGPHR +L+ K + +GS G+Q+ + + Sbjct: 236 LADIEAAYSQAFAAIRAKELFRQMTLIGPHRDELVFFINGKNV-QTYGSQGQQRTTALSV 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA L+ TG PILLLD++ + LD+ ++ L + T T + V D + Sbjct: 295 KLAEIDLMKAETGEYPILLLDDVMSELDDSRQVHLLEAIEGKVQTFLTTTTIEHVRDKMT 354 Query: 360 ETAKFMRISNHQ 371 ++ + Sbjct: 355 VQPAIYYVNQGK 366 >gi|192288436|ref|YP_001989041.1| recombination protein F [Rhodopseudomonas palustris TIE-1] gi|192282185|gb|ACE98565.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris TIE-1] Length = 379 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 146/371 (39%), Positives = 205/371 (55%), Gaps = 4/371 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY L A + VG NG GKTN LEAISFLSPGRG RRA+ DV Sbjct: 5 RITRLTLTHFRNYRGASLTTTADQVVLVGPNGAGKTNCLEAISFLSPGRGLRRATLEDVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ A VEG GLA + +E D + R +I+ + HLR+ Sbjct: 65 NHEGDGSWAVSAEVEGALGLATLGTGIEPPRGDTPTTRRCRIDREPVGSAAAFGDHLRMV 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182 WL PSMD +F G + ERRRF DR+V AID H R+ +R +R RNRLL + DS W Sbjct: 125 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDIRNADSHW 184 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 +IE + AEL + + R + L++++ FP KL L G+++ + Sbjct: 185 LDAIERETAELAIAVAAQRGQTALKLAAMLDARGATSAFPSAKLMLDGWMENALTSEPAT 244 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y L D R D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ L Sbjct: 245 AVEDRYRAILRDSRGRDAAAGRTLDGPHLTDLEVIYAPKAMPARDASTGEQKALLIGLVL 304 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA+L++ TT P+LLLDE+ AHLD +R ALF + +G+Q++MTG D F + Sbjct: 305 AHAQLVAETTSITPLLLLDEVVAHLDPGRREALFTELGKLGAQVWMTGADPMAFAEIGPA 364 Query: 362 AKFMRISNHQA 372 A + + + Sbjct: 365 AGIFDVESGRI 375 >gi|260665213|ref|ZP_05866062.1| recombination protein F [Lactobacillus jensenii SJ-7A-US] gi|260560950|gb|EEX26925.1| recombination protein F [Lactobacillus jensenii SJ-7A-US] Length = 374 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 152/374 (40%), Gaps = 15/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + +RN+ L F IF+G N GKTN+LEA+ FL+ R R S ++ Sbjct: 1 MYLKQLKLQNWRNFEELETGFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + + G + + L+ R + + IN + + L Sbjct: 61 IRFGQKATI-----LSGHVVKSQVETDLQVRINAKGKKAWINRIEQSKLSRYVGQLTAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+P + + ++++ +N L + D Sbjct: 116 FSPEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A L +I R++ + LS + + +L + Sbjct: 176 VFLEVLSDQLAGLAAEIISRRLKYLTYLSEYAKKAYAAISNEKEQLEVVYNPSVPLTSEQ 235 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + Y + L + + TL GPHR DL DK + S G+Q+ + + Sbjct: 236 ITSESIYHEVLACFKKNEAGEIRTGTTLSGPHRDDLKF-LLDKKDAHLYASQGQQRTIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +LI TG P LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SLKLAEIQLIHQITGEYPALLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNH 370 + + K R+ Sbjct: 354 EIVKKPKIFRLKAG 367 >gi|254713411|ref|ZP_05175222.1| recombination protein F [Brucella ceti M644/93/1] gi|254716232|ref|ZP_05178043.1| recombination protein F [Brucella ceti M13/05/1] gi|261218005|ref|ZP_05932286.1| DNA replication and repair protein recF [Brucella ceti M13/05/1] gi|261321145|ref|ZP_05960342.1| DNA replication and repair protein recF [Brucella ceti M644/93/1] gi|260923094|gb|EEX89662.1| DNA replication and repair protein recF [Brucella ceti M13/05/1] gi|261293835|gb|EEX97331.1| DNA replication and repair protein recF [Brucella ceti M644/93/1] Length = 384 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 164/371 (44%), Positives = 230/371 (61%), Gaps = 2/371 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 DV R + F+ A ++ M R ++IN + D+L + R Sbjct: 71 DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I W+V SMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 130 ILWVVSSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 W +IE QMAELG I AR + + ++++I + FP L G L+ + ++ Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++FD+L Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369 Query: 361 TAKFMRISNHQ 371 A+F +S Q Sbjct: 370 DAQFFNVSAGQ 380 >gi|254503692|ref|ZP_05115843.1| RecF/RecN/SMC N terminal domain, putative [Labrenzia alexandrii DFL-11] gi|222439763|gb|EEE46442.1| RecF/RecN/SMC N terminal domain, putative [Labrenzia alexandrii DFL-11] Length = 385 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 153/372 (41%), Positives = 223/372 (59%), Gaps = 5/372 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L ++ FRNYA + + A FVG NG GKTNILEAISFL+ GRG RRA+ D+ Sbjct: 8 RLTRLTLTGFRNYAIMGIGLSAGMVAFVGANGAGKTNILEAISFLTAGRGLRRAALTDIA 67 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R+G +S A++ + + S+ R ++I+ +R + L ++R+ WL Sbjct: 68 RVGGDGTWSVSAKIHLDD--IETSLGTGATAGVPGRKVRIDGEDMRSSESLLDYMRVLWL 125 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 VPSMD +F+G +RRRFLDR+ AIDP H RR+ DFE +R RN+LL +G D ++ S+ Sbjct: 126 VPSMDGLFTGPGSDRRRFLDRLTLAIDPAHGRRVSDFENALRQRNKLLDQGGSD-AYLSA 184 Query: 186 IEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSLTGFLDGK-FDQSFCAL 243 +E Q+A LG ++ AR E + L +I ++ FP LSL G + + S Sbjct: 185 LELQVASLGTAVSFARQETVGLLKQMIDGRPIENTTFPQAMLSLEGTFEAETIGMSASDQ 244 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ Y + L GR D + RTL GPH SDL V + K + A STGEQK +L+G+ LAH Sbjct: 245 EDHYRRLLEQGRHRDRAAGRTLTGPHLSDLKVRHAAKDMPAAQSSTGEQKALLIGLVLAH 304 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 A L + +G P+LLLDE++AHLD D+R ALF + +G Q+FMTGTD S+FD+L ++ Sbjct: 305 AELTAKVSGMTPVLLLDEVAAHLDPDRRAALFERLDALGGQVFMTGTDASLFDALPVHSE 364 Query: 364 FMRISNHQALCI 375 + N++A I Sbjct: 365 VFEVGNNEARLI 376 >gi|325265439|ref|ZP_08132162.1| DNA replication and repair protein RecF [Clostridium sp. D5] gi|324029297|gb|EGB90589.1| DNA replication and repair protein RecF [Clostridium sp. D5] Length = 361 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 160/372 (43%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L L FD + I GDN GKTN+LEA+ + R D+ Sbjct: 1 MVIKSLKLKNYRNYELLDLTFDPKTNILYGDNAQGKTNVLEALYLSGTTKSHRGTKDRDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + T G+E D+ +K S + + IN + IR EL + Sbjct: 61 IQFERDEAHLETIVEKRGIEYQIDMHLK-----KNSPKGIAINKIPIRKASELFGIIHFV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I RRRF+D + +D + + ++ R++ RN LL + Y + Sbjct: 116 FFSPEDLNIIKDGPSGRRRFIDLELSQLDKVYLSNLSNYNRIINQRNSLLKDIYKQENLR 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G K+ +R I ++ +I K ++L+ ++ S Sbjct: 176 ETLDIWDMQLVEYGTKVMESRKRFIEDVNEIISNIHYKLTGGKENITLS------YECSV 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L + L R+ D + T +GPHR DL I GS G+Q+ + + Sbjct: 230 GNLT--LEQALKKNRERDMRLKSTSVGPHRDDLCFMAGSLDIR-KFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ + P+LLLD++ + LD+ ++N L + DI + I TG D+ V + Sbjct: 287 LSEIELVRSLIRDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTVITCTGLDEFVNHRFSI 346 Query: 361 TAKFMRISNHQA 372 K + N Q Sbjct: 347 N-KIFHVKNGQV 357 >gi|226326149|ref|ZP_03801667.1| hypothetical protein COPCOM_03968 [Coprococcus comes ATCC 27758] gi|225205691|gb|EEG88045.1| hypothetical protein COPCOM_03968 [Coprococcus comes ATCC 27758] Length = 361 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 98/372 (26%), Positives = 158/372 (42%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + ++RNY L + FD IF GDN GKTNILE + + R D+ Sbjct: 1 MIIKSLKLKDYRNYEILNIEFDHATNIFYGDNAQGKTNILEGVYLSGTTKSHRGTKDRDL 60 Query: 65 TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G T G+ D+ +K S + + IN V IR EL Sbjct: 61 IRFGQDEAHIETVIEKNGVPWQIDMHLK-----KNSPKGIAINKVPIRRASELFGLTNFV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180 + P I ERRRF+D + +D + + ++ R + RNRLL + Y+ Sbjct: 116 FFSPEDLNIIKNGPAERRRFMDLELSQLDKVYLSDLANYNRTLNQRNRLLKDAYYRDDIL 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ + G KI R+ I ++++I + K ++ L+ ++ Sbjct: 176 DTLDVWDMQLVQYGEKIIQRRLRFIEEVNAIIGDIHHKLTGGRERIGLS------YEPGC 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 AL L R+ D + T +GPHR D+ I GS G+Q+ + + Sbjct: 230 GALS--LEAALEKNRERDIRMKSTSVGPHRDDICFMAGGIDIR-RFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ P+LLLD++ + LD+ ++N L + DI + I TG D+ V + Sbjct: 287 LSEIELVRQIIKDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGLDEFVNHRFSI 346 Query: 361 TAKFMRISNHQA 372 K + N Sbjct: 347 N-KVFHVQNGHV 357 >gi|91974485|ref|YP_567144.1| recombination protein F [Rhodopseudomonas palustris BisB5] gi|91680941|gb|ABE37243.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris BisB5] Length = 378 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 145/370 (39%), Positives = 210/370 (56%), Gaps = 3/370 (0%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY + L + + VG NG GKTN LEAISFLSPGRG RRA+ DV+ Sbjct: 5 RITRLTLTHFRNYRAAALHTRGERVVLVGANGAGKTNCLEAISFLSPGRGLRRATLDDVS 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ A VEG GLA + ++ D + R +I+ + HLR+ Sbjct: 65 DHQGDGSWAVSAEVEGALGLATLGTGIDPPRADAATTRRCRIDREPVGSATAFGDHLRMV 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P+MD +F G + ERRRF DR+V AID +H R+ +R +R RNRLL E D W Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSQHSSRVSALDRSLRSRNRLLEERNADRHWL 184 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242 +IE + AEL V + R + L++++ FP K+ L G+++ + A Sbjct: 185 DAIERETAELAVAVAAMRGQTAARLAAMLDARGAASAFPSAKIMLDGWMESALLTEPATA 244 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ Y L DGR D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ LA Sbjct: 245 VEDRYRAILRDGRLRDAAAGRTLDGPHLTDLQVIYAPKAMPARDASTGEQKALLIGLVLA 304 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA+L+S TG P+LLLDE+ AHLD +R ALF + +G+Q++MTG D + F + A Sbjct: 305 HAQLVSEITGITPLLLLDEVVAHLDPARRRALFAELERLGAQVWMTGADPAGFAEIGPDA 364 Query: 363 KFMRISNHQA 372 + + + + Sbjct: 365 EIFTVESGRI 374 >gi|323486746|ref|ZP_08092065.1| DNA replication and repair protein recF [Clostridium symbiosum WAL-14163] gi|323399885|gb|EGA92264.1| DNA replication and repair protein recF [Clostridium symbiosum WAL-14163] Length = 360 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 156/374 (41%), Gaps = 19/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + +RNY L + FD + GDN GKTNILE++ + + R + ++ Sbjct: 1 MIIESLELKNYRNYKELHINFDPGTNVLYGDNAQGKTNILESVYVCATTKSHRGSKDREI 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G S R + + D+ +K + + IN + I EL + + Sbjct: 61 IEFGEEESHIKMNIRKDDVPYRIDMHLK-----KNKTKGVAINGIAIHKASELFGVVNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P + ERRRF+D + ++ + ++ + +++ RN+LL E F + Sbjct: 116 FFSPEDLNLIKNGPAERRRFVDLELCQLNRLYVHSLVQYNKIILQRNKLLKEIAFRPEYE 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G ++ R + I+ ++ +I + + +L + + + D Sbjct: 176 EMLDIYDMQLVSYGRELIHYRNDFIDQMNGIIRDIHFNLSGGKEELEIRYEPNTEAD--- 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K L R D + TL GPHR D+ + I GS G+Q+ + + Sbjct: 233 -----VLEKALKKSRMQDLRQKTTLTGPHRDDISFYVNNIDIR-KFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ PILLLD++ + LD ++ L ++ I + I TG D + Sbjct: 287 LAEIELVKKIVKDYPILLLDDVLSELDSGRQEHLLSGISHIQTVITCTGLD-DFISHCFQ 345 Query: 361 TAKFMRISNHQALC 374 K ++ N C Sbjct: 346 IDKTFKVVNGTVDC 359 >gi|315174179|gb|EFU18196.1| recombination protein F [Enterococcus faecalis TX1346] Length = 375 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 166/376 (44%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A++ G+ ++ LE R +N + + + L + Sbjct: 61 IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTMVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q+AE G K+ AR+ + L QK + L++ D Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235 Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S AL+ + ++L + RK + T +GPHR DL+ + + +GS G+Q+ + Sbjct: 236 LSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356 I LA L+ + TG P+LLLD++ + LD +++ L + Q F+T T D Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDRIKD 353 Query: 357 SLNETAKFMRISNHQA 372 L + + Sbjct: 354 KLTVEPDIFYVQQGKI 369 >gi|115522033|ref|YP_778944.1| recombination protein F [Rhodopseudomonas palustris BisA53] gi|115515980|gb|ABJ03964.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris BisA53] Length = 379 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 143/371 (38%), Positives = 211/371 (56%), Gaps = 4/371 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNYA+ L +A + G NG GKTN LEAIS LSPGRG RRA+ D+ Sbjct: 5 RIHRLTLTHFRNYAAASLRVNADLVVLAGPNGAGKTNCLEAISLLSPGRGLRRATLDDIA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLRI 122 ++ A +EG GLA + ++ R D + R +I+ + HLR+ Sbjct: 65 DNQGDGSWAVSAEIEGALGLATLGTGIDPRGDEAASTTRRCRIDRENVGSAAAFGDHLRM 124 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P+MD +F G + ERRRF DR+V AID +H R+ +R +R RNRLL + D+ W Sbjct: 125 VWLTPAMDALFMGAASERRRFFDRLVLAIDSQHSARVSALDRSLRSRNRLLEQRSGDTHW 184 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 ++E + AEL V + R E L++ + FP +++L G+++G + Sbjct: 185 LDAVERETAELAVAVAAMRGETATRLAAALSARGAASPFPSAEIALDGWMEGALRSEPAT 244 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y L DGR D+ + RTL GPH +DL V Y KA+ STGEQK +L+G+ L Sbjct: 245 AVEDRYRAILRDGRPRDAAAGRTLDGPHLTDLRVIYAPKAMPARDASTGEQKALLIGLIL 304 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA L++ TG P+LLLDE+ AHLD +R ALF + +G+Q++MTG D + F L + Sbjct: 305 AHAHLVAEMTGITPLLLLDEVVAHLDPSRRRALFEELAKLGAQVWMTGADPAAFVDLGAS 364 Query: 362 AKFMRISNHQA 372 + + N + Sbjct: 365 GEMFEVDNGRI 375 >gi|49474938|ref|YP_032979.1| recombination protein F [Bartonella henselae str. Houston-1] gi|49237743|emb|CAF26935.1| DNA replication and repair protein recF [Bartonella henselae str. Houston-1] Length = 377 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 168/376 (44%), Positives = 231/376 (61%), Gaps = 6/376 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +++ ++ L + +RNY S + F QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y Sbjct: 5 VHKVAVRQLKLLRYRNYFSFNIRFSGQHVVFTGHNGSGKTNLLEALSFLSPGRGLRRAAY 64 Query: 62 ADVT-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +DV+ G F FAR+E + G +I LE D+ R + IN V D L + Sbjct: 65 SDVSFANGGGEGFVVFARLECALYGEVNIGTALEMSDN--SRKVHINGVN-ETGDCLTDY 121 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 +S L PSMD +F+G S+ERRRFLDRMV AIDP H RR+ D++R+MR RNRL +G D Sbjct: 122 CHMSILTPSMDGLFTGSSLERRRFLDRMVLAIDPLHSRRIADYDRVMRARNRLFLDGNED 181 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238 +W ++E QMAEL I+ AR+++I L+ ++ + FP L + GFL+ + Sbjct: 182 CAWFDALEKQMAELATAISAARIDVIRLLNDMLARTPSQLPFPRAFLQIDGFLEAALSKI 241 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S ++E++ +L R +D + RTL GPHR+DL V Y DK + A STGEQK +L G Sbjct: 242 SAVEVEEQFCDRLQHNRAIDRAAGRTLEGPHRTDLQVFYADKNMAAASCSTGEQKALLTG 301 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + L HARL + PILLLDEI AHLD +R ALF I+ D+G Q FMTGTD +F++L Sbjct: 302 LVLCHARLTGLMSERTPILLLDEIVAHLDSHRRAALFDILDDLGGQTFMTGTDPILFNAL 361 Query: 359 NETAKFMRISNHQALC 374 A+F I + L Sbjct: 362 KGRAEFFAIKDGTLLQ 377 >gi|288959568|ref|YP_003449909.1| DNA replication and repair protein [Azospirillum sp. B510] gi|288911876|dbj|BAI73365.1| DNA replication and repair protein [Azospirillum sp. B510] Length = 394 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 143/374 (38%), Positives = 215/374 (57%), Gaps = 10/374 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + ++ FR Y S+RL D + +G NG GKTN+LEA+SFL+PGRG R A A+V R Sbjct: 20 VRRMTLTRFRGYDSVRLEPDHRPVALIGPNGAGKTNLLEAVSFLAPGRGLRGARLAEVER 79 Query: 67 IGSP--SFFSTFARVEGMEGLADISIKLETRDD-----RSVRCLQINDVVIRVVDELNKH 119 +GSP + ++ A ++ G +I E D R R ++I+ + L +H Sbjct: 80 LGSPPGAGWAVAATLDTPLGPVEIGTGREPHDGNRASDRDRRLVRIDGHPAKGQTALAEH 139 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + + WL P MDR+F + RRRFLDR+VF DP H R+ +E +R R RLL +G FD Sbjct: 140 VAMVWLTPQMDRLFLEGASGRRRFLDRLVFGFDPAHAGRLSRYEHALRERARLLRDGRFD 199 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 W ++E QMA G+ + AR E++ L + + FP L++ G ++ D+ Sbjct: 200 EGWLGALEDQMATTGIAVAAARREVVQRLRAACARSI--GPFPAADLAVAGTVERWLDEG 257 Query: 240 FC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 A ++ L GR+ D+ +GPH+SDL V + K + A STGEQK +L+ Sbjct: 258 PALAAEDSLRDSLRLGRRADADGGGATLGPHKSDLAVRHAPKDMPAALCSTGEQKALLIA 317 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 I LA+ARL++ G APILLLDE++AHLD ++R ALF + +G+Q +MTGTD+ +F+ L Sbjct: 318 IVLANARLLAAERGAAPILLLDEVAAHLDPERRAALFGEILALGAQAWMTGTDEGIFNPL 377 Query: 359 NETAKFMRISNHQA 372 E A+ RI + Sbjct: 378 GEDARRFRIEDAHI 391 >gi|75674202|ref|YP_316623.1| recombination protein F [Nitrobacter winogradskyi Nb-255] gi|74419072|gb|ABA03271.1| DNA replication and repair protein RecF [Nitrobacter winogradskyi Nb-255] Length = 385 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 138/379 (36%), Positives = 214/379 (56%), Gaps = 7/379 (1%) Query: 1 MTNRI---KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 M + +++ L+++ FRNY + + + VG NG GKTN LEAIS LSPGRG R Sbjct: 1 MPGVMIPSRVRRLSLTHFRNYRAATFETRSNMIVLVGPNGAGKTNCLEAISLLSPGRGLR 60 Query: 58 RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVVIRVVD 114 RA+ D+ ++ A ++G GLA + ++ + S R +I+ + Sbjct: 61 RATRDDIADNTGDGSWAVSAEMQGALGLATLGTGIDAPGNEAAPSGRRCRIDREPVASAA 120 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 HLR+ WL PSMD +F+G + +RRRFLDR+V AID H R+ ER +R RNRLL Sbjct: 121 AFGDHLRMVWLTPSMDGLFTGPASDRRRFLDRLVLAIDSEHSGRVSALERSLRSRNRLLE 180 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + D WC +IE + AEL V + R + + L++ + +FP + L G+++ Sbjct: 181 MRHHDDLWCEAIERKTAELAVAVAAMRAQTVTRLTAALEARGGGSSFPAASIHLDGWMEN 240 Query: 235 KF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + +++ Y + L R D+ + RTL GPH +DL V Y K + STGEQK Sbjct: 241 ALLTEPATVVEDRYREILRASRPRDAAAGRTLEGPHLTDLEVIYAPKNMPAKEASTGEQK 300 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 +L+G+ LAHARL++ TG P+LLLDE+ AHLD D+R ALF + +G+Q++M+G D + Sbjct: 301 ALLIGLVLAHARLVAEMTGIIPLLLLDEVVAHLDPDRRGALFGELAGLGAQVWMSGADPA 360 Query: 354 VFDSLNETAKFMRISNHQA 372 F +L+ ++ R+ + + Sbjct: 361 AFANLSAGSETFRVDSGRI 379 >gi|28209864|ref|NP_780808.1| recombination protein F [Clostridium tetani E88] gi|28202299|gb|AAO34745.1| recFprotein [Clostridium tetani E88] Length = 370 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 173/374 (46%), Gaps = 12/374 (3%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + +K+L + FRNY L + D +F+G+N GKTN+LE+I + S GR R + + Sbjct: 3 DMYVKYLKLINFRNYKELNIELDKNINVFIGNNAQGKTNVLESIYYASIGRSHRTSKDKE 62 Query: 64 VTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + + S+ + E ++ +I + + + +N + I + EL L + Sbjct: 63 LIKWQESNSYIKIYVAKERLDKTIEIRV-----LKEGKKAINVNSININKLSELFGILNV 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SS 181 P I RR+FLD + + ++ ++ +++++ RN LL +G + + Sbjct: 118 VIFSPEDLSIVKESPSFRRKFLDIELSKLSKQYYYNLVQYQKVLNERNMLLKKGGDEVPN 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-FDQSF 240 + Q+A G I R + + L+ + + + ++S T K + Sbjct: 178 IIGVYDEQLARFGSNIIREREKYLKKLNDIGKKIHLEITSDKEEISFTYLSSIKNKNMDD 237 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++E + +++ R D R T +GPHR D +++ + T ++GS G+Q+ + I Sbjct: 238 GKIEEIFLQEIIKNRNSDIEKRYTSVGPHRDDFLININNVN-TRSYGSQGQQRTATLTIK 296 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359 A +I + G P+LLLD++ + LD ++ + + DI Q +T T +++ L Sbjct: 297 FASLDIIKDEIGEYPVLLLDDVLSELDSSRQKYILSSIRDI--QTIITCTGIENIKKYLK 354 Query: 360 ETAKFMRISNHQAL 373 AK ++ N + + Sbjct: 355 NDAKIFKVENGECI 368 >gi|239830849|ref|ZP_04679178.1| DNA replication and repair protein RecF [Ochrobactrum intermedium LMG 3301] gi|239823116|gb|EEQ94684.1| DNA replication and repair protein RecF [Ochrobactrum intermedium LMG 3301] Length = 384 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 168/376 (44%), Positives = 237/376 (63%), Gaps = 4/376 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +R+ I+ L + FRNYA L L H + G+NG GKTN++EA+SFLSPGRG RRA+Y Sbjct: 11 PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAVSFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 DV R S F+ A ++ M G A+I R ++IN + D+L + Sbjct: 71 DDVARTSSLDGFAIHAALDCMIYGEAEIG-TGTAGGGEGGRKVRINGIAA-SGDDLLDYA 128 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 RI W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+ER MR RNRLL++G D Sbjct: 129 RILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYERAMRSRNRLLSDGNGDD 188 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 W +IE+QMAELG I AR E + ++++I + FP L G L+ + ++ Sbjct: 189 QWLDAIESQMAELGTAIAAARAEAMRLIAAMIERLPAEGPFPKADCFLEGTLEQRISVEA 248 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L+E++ + L DGR D + RTL GPHR+DLIV + KA+ A STGEQK +L+G+ Sbjct: 249 ALDLEEDFRRTLRDGRARDRAAGRTLEGPHRTDLIVQHRPKAMPAALCSTGEQKALLIGL 308 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++F++L Sbjct: 309 VLAHARLTAELSGMAPILLLDEIAAHLDTGRRAALFGILNELGGQAFMTGTDRALFEALE 368 Query: 360 ETAKFMRISNHQALCI 375 A+F ++ + Sbjct: 369 GEAQFFNVAAGTLTPL 384 >gi|238915980|ref|YP_002929497.1| DNA replication and repair protein RecF [Eubacterium eligens ATCC 27750] gi|259563364|sp|C4Z176|RECF_EUBE2 RecName: Full=DNA replication and repair protein recF gi|238871340|gb|ACR71050.1| DNA replication and repair protein RecF [Eubacterium eligens ATCC 27750] Length = 363 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 170/375 (45%), Gaps = 21/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + +FRNY L + F+ I GDN GKTNILE+I S + R + ++ Sbjct: 1 MIVESVELKDFRNYEFLDMNFNEHVNIIYGDNAQGKTNILESIYMCSTSKSHRGSKDREI 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S GM+ D+ +K + + +N + I+ EL + I Sbjct: 61 VRFGEDESHIKLNVLKHGMKYRIDMHLK-----KNKTKGIAVNGIPIKKAVELFGIINIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181 + P I ERRRF+D + +D + ++++ +++ RN+LL + F S Sbjct: 116 FFSPEDLNIIKNGPSERRRFMDMELSQLDKIYLSNLVNYNKVLNQRNKLLKDIAFSPSEQ 175 Query: 182 ---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + Q+ + G I R I ++++I + + + + D + Sbjct: 176 LMQTLDIWDMQLVKYGSLIIKGRKSFIEKINTIISDIHSRLTGGIENIKVCYVPDVDVN- 234 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 ++ +++ + R+ D + T GPH+ DLI D + +GS G+Q+ + Sbjct: 235 -------DFEEEVRNSRQKDIKYKVTGKGPHKDDLIFLINDNDVR-KYGSQGQQRTAALS 286 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + L+ L+ P+LLLD++ + LD +++N L + DI + + TG ++ + + + Sbjct: 287 LKLSEIELVKLVIKDTPVLLLDDVLSELDSNRQNFLINSIGDIQTIVTCTGLEEFINNRM 346 Query: 359 NETAKFMRISNHQAL 373 N K ++++ + Sbjct: 347 NIN-KIFKVTDGHVV 360 >gi|51316445|sp|Q899S7|RECF_CLOTE RecName: Full=DNA replication and repair protein recF Length = 367 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 173/373 (46%), Gaps = 12/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K+L + FRNY L + D +F+G+N GKTN+LE+I + S GR R + ++ Sbjct: 1 MYVKYLKLINFRNYKELNIELDKNINVFIGNNAQGKTNVLESIYYASIGRSHRTSKDKEL 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S+ + E ++ +I + + + +N + I + EL L + Sbjct: 61 IKWQESNSYIKIYVAKERLDKTIEIRV-----LKEGKKAINVNSININKLSELFGILNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182 P I RR+FLD + + ++ ++ +++++ RN LL +G + + Sbjct: 116 IFSPEDLSIVKESPSFRRKFLDIELSKLSKQYYYNLVQYQKVLNERNMLLKKGGDEVPNI 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-FDQSFC 241 + Q+A G I R + + L+ + + + ++S T K + Sbjct: 176 IGVYDEQLARFGSNIIREREKYLKKLNDIGKKIHLEITSDKEEISFTYLSSIKNKNMDDG 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++E + +++ R D R T +GPHR D +++ + T ++GS G+Q+ + I Sbjct: 236 KIEEIFLQEIIKNRNSDIEKRYTSVGPHRDDFLININNVN-TRSYGSQGQQRTATLTIKF 294 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNE 360 A +I + G P+LLLD++ + LD ++ + + DI Q +T T +++ L Sbjct: 295 ASLDIIKDEIGEYPVLLLDDVLSELDSSRQKYILSSIRDI--QTIITCTGIENIKKYLKN 352 Query: 361 TAKFMRISNHQAL 373 AK ++ N + + Sbjct: 353 DAKIFKVENGECI 365 >gi|323694888|ref|ZP_08109038.1| DNA replication and repair protein recF [Clostridium symbiosum WAL-14673] gi|323500978|gb|EGB16890.1| DNA replication and repair protein recF [Clostridium symbiosum WAL-14673] Length = 360 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 155/374 (41%), Gaps = 19/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + +RNY L + FD + GDN GKTNILE++ + + R + ++ Sbjct: 1 MIIESLELKNYRNYKELHINFDPGTNVLYGDNAQGKTNILESVYVCATTKSHRGSKDREI 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G S R + + D+ +K + + IN + I EL + + Sbjct: 61 IEFGEEESHIKMNIRKDDVPYRIDMHLK-----KNKTKGVAINGIAIHKASELFGVVNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P + ERRRF+D + ++ + ++ + +++ RN+LL E F + Sbjct: 116 FFSPEDLNLIKNGPAERRRFVDLELCQLNRLYVHSLVQYNKIILQRNKLLKEIAFRPEYE 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G ++ R + I+ ++ +I + +L + + + D Sbjct: 176 EMLDIYDMQLVSYGRELIHYRNDFIDQMNGIIRNIHFNLSGGKEELEIRYEPNTEAD--- 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K L R D + TL GPHR D+ + I GS G+Q+ + + Sbjct: 233 -----VLEKALKKSRMQDLRQKTTLTGPHRDDISFYVNNIDIR-KFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ PILLLD++ + LD ++ L ++ I + I TG D + Sbjct: 287 LAEIELVKKIVKDYPILLLDDVLSELDSGRQEHLLSGISHIQTVITCTGLD-DFISHCFQ 345 Query: 361 TAKFMRISNHQALC 374 K ++ N C Sbjct: 346 IDKTFKVVNGTVDC 359 >gi|227508131|ref|ZP_03938180.1| recombination protein F [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192360|gb|EEI72427.1| recombination protein F [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 373 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 90/375 (24%), Positives = 162/375 (43%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K +++ FRNY L F +F+G+N GKTN+LEAI L+ R R ++ ++ Sbjct: 1 MKLKDISLHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + A+++G + +E + +IN + + L + Sbjct: 61 INWQSQT-----AQLKGTIQKQLGKVPIELDLGTKGKRAKINHLEQAKLSSYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P I G RR+F+D + R+ +++++R RNR L + D Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q++ G +I R++++ L + + L+ +Q Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGFAKNVHTEISQGKEALTFLYQTAVPDEQLT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S + + K+ D ++ + TL+GPHR DL K + + GS G+Q+ + Sbjct: 236 SIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEV-QSFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA L+ T PILLLD++ + LD+ ++ L + D Q F+T T S Sbjct: 295 VKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQDK-VQTFLTTTSLSGVQQE 353 Query: 358 LNETAKFMRISNHQA 372 L K RI+N + Sbjct: 354 LLSNPKIFRIANGKV 368 >gi|326202775|ref|ZP_08192642.1| LOW QUALITY PROTEIN: DNA replication and repair protein RecF [Clostridium papyrosolvens DSM 2782] gi|325986852|gb|EGD47681.1| LOW QUALITY PROTEIN: DNA replication and repair protein RecF [Clostridium papyrosolvens DSM 2782] Length = 372 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 100/376 (26%), Positives = 162/376 (43%), Gaps = 12/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + +RN+ + RLVF + I GDNG GKTNILEAI + GR R A +++ Sbjct: 1 MIVKSLVLKNYRNHTNTRLVFSDRFNIIYGDNGQGKTNILEAIYLCASGRSHRTAKDSEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G SF DI IK + L+IN++ I+ + L +L Sbjct: 61 IKFGCDSFSINANVFNIGSLEKDIEIKY---YENQKNKLKINEIPIKKIGALMGNLYAVL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC- 183 P I ERRRF+D + I P + + ++++ RN LL + Sbjct: 118 FSPEDLFIVKQGPTERRRFVDITLSQIRPSYFYNLQQLTKILKQRNTLLKNINSNPKLMD 177 Query: 184 --SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQS 239 ++AE+ I AR LS+L K+S D Sbjct: 178 TVDIWNIRLAEVAASIITARRTFSKMLSNLAESQHNFLTEKSEKISFDYKCSFQITEDDD 237 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++ Y K L D + T +GPHR D + K++ + GS G+Q+ ++ + Sbjct: 238 KNKIQNLYIKSLEKTLSRDIILGYTTMGPHRDDYDIMVNGKSLKL-FGSQGQQRSAVLSL 296 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358 +A LI T P+LLLD++ + LD +++ L + + Q F+T T F++ L Sbjct: 297 KIAEIELIKRETEQYPVLLLDDVMSELDNNRQKYLMESIKE--VQTFVTCTSTEHFENLL 354 Query: 359 NETAKFMRISNHQALC 374 + + F +I C Sbjct: 355 SGESNFFKIVGGNIQC 370 >gi|182416742|ref|ZP_02624843.2| DNA replication and repair protein RecF [Clostridium butyricum 5521] gi|237669606|ref|ZP_04529584.1| DNA replication and repair protein RecF [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379399|gb|EDT76894.1| DNA replication and repair protein RecF [Clostridium butyricum 5521] gi|237654840|gb|EEP52402.1| DNA replication and repair protein RecF [Clostridium butyricum E4 str. BoNT E BL5262] Length = 360 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 167/371 (45%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + ++ +RNY +L L +F+GDN GKTN+LEAI + + + R + ++ Sbjct: 1 MYIKNIMLANYRNYETLSLELSKNVNVFIGDNAQGKTNVLEAIYYCAFAKSHRTSKDREL 60 Query: 65 TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ S + ++ DI+I RD + + +++N + + + EL + Sbjct: 61 INWKNDKAYISLLVGKDRLDKRIDINI---LRDGK--KAIKVNSIKVAKIGELFGTFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P ++ RR+ LD + I+ ++ ++ + +++ RN LL F+ Sbjct: 116 MFSPEDLKVIKEAPNLRRKLLDMELSQINKKYYFNLVQYNKILNERNILLKSRNFNEDVL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+ + I R+E I+ ++ + ++ ++ + Sbjct: 176 EVYDLQLVDYADYIISKRLEYIDKINFYGEKIHREITADKEEIKFKYSCNV----DLTNY 231 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K Y KKL D K D T +GPHR D V D GS G+Q+ ++ + + Sbjct: 232 KNNYLKKLQDNIKRDREKGLTSVGPHRDDFNVFLNDIDAK-TFGSQGQQRTAILTMKFSS 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA 362 ++I TG P+LLLD++ + LD +++ + + G Q +T T V D L++ A Sbjct: 291 LKIIKEITGEYPVLLLDDVLSELDVNRKKYILSTIH--GIQTIITCTGIEVLSDYLDDNA 348 Query: 363 KFMRISNHQAL 373 K +S+ + L Sbjct: 349 KIFNVSSGRIL 359 >gi|218134380|ref|ZP_03463184.1| hypothetical protein BACPEC_02274 [Bacteroides pectinophilus ATCC 43243] gi|217989765|gb|EEC55776.1| hypothetical protein BACPEC_02274 [Bacteroides pectinophilus ATCC 43243] Length = 358 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 163/372 (43%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +N+ ++RNY L + + I GDN GKTNILE++ + + R + ++ Sbjct: 1 MIVKSINLKDYRNYELLNIELSDKTNIIYGDNAQGKTNILESMYVGATTKSHRGSKDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 R G A ++ + DI +++ + + + +N + ++ EL + + Sbjct: 61 IRFGCDE-----AHIKMIVCRNDIDYRIDMHIKKNKAKGIAVNGIPLKRSVELFGIVNMV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180 + P I ERRRF+D + +D + ++ + +++ RN+LL + F Sbjct: 116 FFSPEDLNIIKDGPAERRRFMDMELSQLDKVYVFNLMQYNKVLMQRNKLLKDIAFRPDSM 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G ++ R E + L+ ++ K + +L + Sbjct: 176 DTLDVWDMQLVRYGEEVIKGRTEFVIKLNDIVSRIHSKLSGGREELKIEYL--------P 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A E R D T GPH+ D+ + Y + +GS G+Q+ + + Sbjct: 228 SADSGELGSCTASSRDKDIRFGATAYGPHKDDI-IFYINGNDVRKYGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ T PILLLD++ + LDE+++N L + DI + + TG ++ + + ++ Sbjct: 287 LAEIELVRQTINDTPILLLDDVLSELDENRQNFLMESMGDIQTVVTCTGLEEFINNRISL 346 Query: 361 TAKFMRISNHQA 372 K ++ N Sbjct: 347 D-KVFKVVNGHV 357 >gi|27375938|ref|NP_767467.1| recombination protein F [Bradyrhizobium japonicum USDA 110] gi|27349076|dbj|BAC46092.1| DNA replication and repair protein [Bradyrhizobium japonicum USDA 110] Length = 378 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 139/370 (37%), Positives = 208/370 (56%), Gaps = 3/370 (0%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FRNY + L A VG NG GKTN +EAISFLSPGRG RRA+ DV Sbjct: 5 RIHRLTLTHFRNYRAAGLETAADMVALVGPNGAGKTNCIEAISFLSPGRGLRRATLEDVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ A+VEG GLA + +E D R +I+ + H+R+ Sbjct: 65 DNQGDGSWAVSAQVEGALGLATLGTGIEPPRADAAVSRRCRIDREPVNSAAAFGDHIRMV 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P+MD +F G + ERRRF DR+V AID H R+ ER +R RNRLL +D WC Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRINALERSLRSRNRLLETRNYDDHWC 184 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242 +IE + AEL V + R + L+ ++ Q FP +++L G+++ ++ + Sbjct: 185 DAIERETAELAVAVAATRGQTAARLTGMLSARAQASAFPSAQIALDGWMENALLRETATS 244 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ Y + L D R D+++ RT GPH +DL V Y K + STGEQK +L+G+ LA Sbjct: 245 VEDRYRQILRDNRPRDAIAGRTTDGPHLTDLQVIYAPKGMPARDASTGEQKALLIGLVLA 304 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L++ TG P+LLLDE+ AHLD ++R ALF + +G+Q+++TG D + F + Sbjct: 305 HATLVAEMTGIVPLLLLDEVVAHLDPNRRAALFEELKKLGAQVWLTGADPAAFAEIGAGG 364 Query: 363 KFMRISNHQA 372 + + + + Sbjct: 365 EVFDVESGRV 374 >gi|116628687|ref|YP_813859.1| recombination protein F [Lactobacillus gasseri ATCC 33323] gi|238853342|ref|ZP_04643722.1| DNA replication and repair protein RecF [Lactobacillus gasseri 202-4] gi|311111573|ref|ZP_07712970.1| DNA replication and repair protein RecF [Lactobacillus gasseri MV-22] gi|122274315|sp|Q047F1|RECF_LACGA RecName: Full=DNA replication and repair protein recF gi|116094269|gb|ABJ59421.1| DNA replication and repair protein RecF [Lactobacillus gasseri ATCC 33323] gi|238834030|gb|EEQ26287.1| DNA replication and repair protein RecF [Lactobacillus gasseri 202-4] gi|311066727|gb|EFQ47067.1| DNA replication and repair protein RecF [Lactobacillus gasseri MV-22] Length = 374 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 159/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + +FRN+ L+ FD IF+G N GKTN+LEAI FL+ R R S ++ Sbjct: 1 MYLANFELKDFRNFKELKTDFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FA ++G + + ++L+ R + + +N + + + + Sbjct: 61 IRFGSK-----FAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKKLSAYVGQMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + ++++ RN L + D Sbjct: 116 FSPEDLALVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQLSIKKANDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A + +I R++ I L+S + + KL + K Sbjct: 176 VFLDVLSDQLAGIAAEIISRRIKYIKKLNSYAKAAHSEISGQAEKLQIFYRPSVKEIIPE 235 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++ Y K + R + TL GPHR DL +K S G+Q+ + + Sbjct: 236 DNVETIYRKVITSYKKNRPNEIRKGTTLSGPHRDDLEFLINEKN-AHDFASQGQQRTISL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T PILLLD++ + LD +++ L + +Q F+T TD Sbjct: 295 SVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSRLLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + K IS Sbjct: 354 EIVKEPKVYHISAGTI 369 >gi|126697570|ref|YP_001086467.1| DNA replication and repair protein [Clostridium difficile 630] gi|254977346|ref|ZP_05273818.1| DNA replication and repair protein [Clostridium difficile QCD-66c26] gi|255094676|ref|ZP_05324154.1| DNA replication and repair protein [Clostridium difficile CIP 107932] gi|255102903|ref|ZP_05331880.1| DNA replication and repair protein [Clostridium difficile QCD-63q42] gi|255308723|ref|ZP_05352894.1| DNA replication and repair protein [Clostridium difficile ATCC 43255] gi|255316430|ref|ZP_05358013.1| DNA replication and repair protein [Clostridium difficile QCD-76w55] gi|255519090|ref|ZP_05386766.1| DNA replication and repair protein [Clostridium difficile QCD-97b34] gi|255652273|ref|ZP_05399175.1| DNA replication and repair protein [Clostridium difficile QCD-37x79] gi|260681773|ref|YP_003213058.1| DNA replication and repair protein [Clostridium difficile CD196] gi|306521987|ref|ZP_07408334.1| DNA replication and repair protein [Clostridium difficile QCD-32g58] gi|123363673|sp|Q18C86|RECF_CLOD6 RecName: Full=DNA replication and repair protein recF gi|115249007|emb|CAJ66818.1| DNA replication and repair protein RecF [Clostridium difficile] gi|260207936|emb|CBA60047.1| DNA replication and repair protein [Clostridium difficile CD196] Length = 371 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 90/374 (24%), Positives = 171/374 (45%), Gaps = 11/374 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + FRNY L L F+ + + VG NG GKTNI+E+I LS G+ FR ++ Sbjct: 1 MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S + + + G + +E + + ++IN V ++ + EL +L + Sbjct: 61 VRFNSENLY-----IGGSFSKYNKYSLIELIIGKDKKGIRINKVPLQKIQELLGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P R+ ERR F+D+ + I P++ + + ++ + + R+R+L + D + Sbjct: 116 FSPEDLRLVKEGPKERRAFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKNIHVDEALLD 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYV--QKENFPHIKLSLTGFLDGKFDQSFCA 242 + +A+ G I I R + I ++++ + + ++ + + Sbjct: 176 VYDDTLAKYGSYIYILRRDFIKKIANISENMHMNLTNGVERLSIRYKNQINITDEDTIDT 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + ++ KL R D S+ T G H+ DL + D + GS G+Q+ + + L+ Sbjct: 236 VYNKFLAKLSSNRPNDIESKTTRYGIHKDDLNIFINDLDARL-FGSQGQQRTASISLKLS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE-T 361 LI N P+L+LD++ + LDE ++ L ++ Q+F+T + S +E Sbjct: 295 EIELIKNEVEEYPVLILDDVFSELDEARQKLLVNNLS--NVQMFITSAEVSHKKIFDEKN 352 Query: 362 AKFMRISNHQALCI 375 I N + I Sbjct: 353 VTIFNIENGDVISI 366 >gi|312869203|ref|ZP_07729375.1| DNA replication and repair protein RecF [Lactobacillus oris PB013-T2-3] gi|311095224|gb|EFQ53496.1| DNA replication and repair protein RecF [Lactobacillus oris PB013-T2-3] Length = 373 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 148/376 (39%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRNY + F + +G N GKTN+LEAI LS R R + ++ Sbjct: 1 MILSELHLHHFRNYEDQTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTNNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F + G+ A + LE + + + ++N + + + L Sbjct: 61 INWQEKSAF-----ISGVVQKASGRVPLELQFTKEGKRAKVNHLEQARLAQYIGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D + ++ + L+R RN+ L + D Sbjct: 116 FAPEDLSLVKGAPAVRRRFMDMEFSQMSSKYLYNASQYRSLLRQRNKYLKQLKYGQQHDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + Q+A G ++ +AR + L + + + KL L L + Sbjct: 176 VLLDVLSDQLAAYGAELVVARFHFLQQLEKWAADLHYQISLNAEKLRLVYATQLKVTAET 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++ + + + T+ GP R D+ K + + GS G+Q+ + Sbjct: 236 TVDDAYQQLLTIFKENKAREIDQGSTMFGPQRDDIRFLVNGKNV-QSFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG P+LLLD++ + LD ++ L + D Q F+T T S Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDTVRQTHLLTAIQDK-VQTFLTTTSLSDVARQ 353 Query: 358 LNETAKFMRISNHQAL 373 L I N + Sbjct: 354 LINEPTIFNIKNGTLI 369 >gi|325663386|ref|ZP_08151836.1| hypothetical protein HMPREF0490_02577 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086960|ref|ZP_08336036.1| hypothetical protein HMPREF0987_02339 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470840|gb|EGC74070.1| hypothetical protein HMPREF0490_02577 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409621|gb|EGG89060.1| hypothetical protein HMPREF0987_02339 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 361 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 163/370 (44%), Gaps = 19/370 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + FRNY L + FD IF GDN GKTNILEA+ + R D+ Sbjct: 1 MVIKSLKLKNFRNYDFLSIEFDHATNIFYGDNAQGKTNILEAVYLTGTTKSHRGTKDRDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G S T +G+E D+ +K S + + IN + IR EL + + Sbjct: 61 IQFGNEESHIETVIEKDGIEFQVDMHLK-----KNSPKGIAINKIPIRKASELFGLVHLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180 + P I ERRRF+D + +D + + ++ R++ RNRLL + + Sbjct: 116 FFSPEDLNIIKNGPAERRRFMDLELSQLDKVYLSDLANYNRIINQRNRLLKDCQNRAELN 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ + G +I R + + ++ +I K ++++ + Sbjct: 176 EMLDLWDMQLIQYGSRIMERREKFLEEVNEIISGIHYKLTGGRETITISYEKNIG----- 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + E+ L R+ D + T GPHR D+ D I GS G+Q+ + + Sbjct: 231 ---QMEFESVLKKNRERDIRMKSTSAGPHRDDICFLTKDIDIR-KFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ ++ P+LLLD++ + LD++++N L + DI + I TG D+ V + Sbjct: 287 LSEIEIVRKLIKDTPVLLLDDVLSELDKNRQNYLLDSIHDIQTLITCTGVDEFVNHRFSI 346 Query: 361 TAKFMRISNH 370 K +SN Sbjct: 347 N-KIFHVSNG 355 >gi|227511155|ref|ZP_03941204.1| recombination protein F [Lactobacillus buchneri ATCC 11577] gi|227085637|gb|EEI20949.1| recombination protein F [Lactobacillus buchneri ATCC 11577] Length = 373 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 161/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++K + + FRNY L F +F+G+N GKTN+LEAI L+ R R ++ ++ Sbjct: 1 MRLKDIALHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + A+++G + +E + +IN + + L + Sbjct: 61 INWQSQT-----AQLKGTIQKQLGKVPIELDLGTKGKRAKINHLEQAKLSSYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P I G RR+F+D + R+ +++++R RNR L + D Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q++ G +I R++++ L + + L+ +Q Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGFAKNVHTEISQGKEALTFLYQTAVPDEQLT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S + + K+ D ++ + TL+GPHR DL K + + GS G+Q+ + Sbjct: 236 SIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEV-QSFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA L+ T PILLLD++ + LD+ ++ L + D Q F+T T S Sbjct: 295 VKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQDK-VQTFLTTTSLSGVQQE 353 Query: 358 LNETAKFMRISNHQA 372 L K RI+N + Sbjct: 354 LLSNPKIFRIANGKV 368 >gi|291526543|emb|CBK92130.1| recF protein [Eubacterium rectale DSM 17629] gi|291529186|emb|CBK94772.1| recF protein [Eubacterium rectale M104/1] Length = 362 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 161/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + +S FRNY L + FD++ I GDN GKTNILEA + + + ++ Sbjct: 1 MIIKSIQLSNFRNYEKLDISFDSETNIIYGDNAQGKTNILEAAYLSGTTKSHKGSKDKEM 60 Query: 65 TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G T E D+ ++ + + IN + I+ EL L I Sbjct: 61 IRFGEDEAHIRTIVEKNDKEYRIDMHLR-----KNGAKGVAINKMPIKKASELFGILNIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P I ERRRF+D + +D + + + + + RNRLL + + Sbjct: 116 FFSPEDLNIIKNGPAERRRFIDLELCQLDKIYLSNLSKYNKTLVQRNRLLKDIAYRPDLI 175 Query: 184 S---SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G + R E +N L+ +I + + KL L K++ S Sbjct: 176 DTLQVWDMQLLEYGRHVIKKRREFVNELNEIIQDIHSNISGGREKLIL------KYEPSI 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + +L R D +T +GPHR D++ D +GS G+Q+ + + Sbjct: 230 DDIF--FEDELLKARSRDLKLCQTTVGPHRDDMLFSV-DGVDIRKYGSQGQQRTSALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ P+LLLD++ + LD +++N L ++D + I TG D+ V + Sbjct: 287 LSEISLVKKNINSTPVLLLDDVLSELDGNRQNYLLNSLSDTQTIITCTGLDEFVKNRFQV 346 Query: 361 TAKFMRISNHQALCI 375 K + Q I Sbjct: 347 D-KVFHVVKGQVEVI 360 >gi|330447267|ref|ZP_08310917.1| ssDNA and dsDNA binding, ATP binding [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491458|dbj|GAA05414.1| ssDNA and dsDNA binding, ATP binding [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 360 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 161/369 (43%), Gaps = 13/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN + L VG NG GKT++LEAI +L GR FR + V Sbjct: 1 MALTRLMVHDFRNIEACDLALATGFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV + + I L + D + ++I + V +L + L + Sbjct: 61 IRHEQSELF-IHGRVVDNQTQLMLPIGLNKKRDGTT-EVKIAGEPNQKVAQLAQILPLQL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G RR F+D VF ++P+ +RL + RN LL S Sbjct: 119 ITPEGFDLLIGGPKYRRAFIDWGVFHVEPKFYHAWSRLKRLTKQRNALLKTARSYRE-LS 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I++ R + I+A+ E Q P ++ L + + + Sbjct: 178 YWDQELALLAEQISVWRQDYISAVKEKAAEIFQ-VFLPEYEIQLGYYRGWEKETP----- 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T GPH++DL + + S G+ K+++ + LA Sbjct: 232 --YAELLKRNFERDCQLGYTASGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNETAK 363 ++ TG I L+D+ ++ LD +R L + + + +Q+F++ D V D L+E K Sbjct: 289 LHLTEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISDDQVADMLDENGK 348 Query: 364 FMRISNHQA 372 + + + Sbjct: 349 LFHVEHGKI 357 >gi|300362675|ref|ZP_07058851.1| recombination protein F [Lactobacillus gasseri JV-V03] gi|300353666|gb|EFJ69538.1| recombination protein F [Lactobacillus gasseri JV-V03] Length = 374 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 158/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + +FRN+ L+ FD IF+G N GKTN+LEAI FL+ R R S ++ Sbjct: 1 MYLANFELKDFRNFKELKTNFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FA ++G + + ++L+ R + + +N + + + + Sbjct: 61 IRFGSK-----FAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKRLSAYVGQMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + ++++ RN L + D Sbjct: 116 FSPEDLALVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQLSIKKANDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A + +I R++ I L+S + + KL + K Sbjct: 176 VFLDVLSDQLAGIAAEIISRRIKYIKKLNSYAQAAHSEISGQAEKLQIFYRPSVKEIIPE 235 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++ Y K + R + TL GPHR DL DK S G+Q+ + + Sbjct: 236 DDVETIYQKVITSYKKNRSNEIRKGTTLSGPHRDDLEFLINDKN-AHDFASQGQQRTISL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ PILLLD++ + LD +++ L + +Q F+T TD Sbjct: 295 SVKLAEIQLVHELKQEYPILLLDDVMSELDHRRQSRLLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + K IS Sbjct: 354 EIVKEPKVYHISAGTI 369 >gi|197302272|ref|ZP_03167331.1| hypothetical protein RUMLAC_00999 [Ruminococcus lactaris ATCC 29176] gi|197298703|gb|EDY33244.1| hypothetical protein RUMLAC_00999 [Ruminococcus lactaris ATCC 29176] Length = 370 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 155/374 (41%), Gaps = 19/374 (5%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + I+ L + +RNY L + FD + I GDN GKTNILEA+ + R Sbjct: 8 TDMVIRSLRLKNYRNYDLLDMSFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDR 67 Query: 63 DVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 D+ + G +G+ D+ +K S + + I+ + IR EL + Sbjct: 68 DMIQFGHDEAHLEMVVEKKGLTFQIDMHLK-----KNSPKGIAIDRIPIRKASELFGIVH 122 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + P I RRRF+D + +D + + ++ R++ RN LL + Y + Sbjct: 123 FVFFSPEDLNIIKEGPAGRRRFIDLELSQLDKIYLSNLTNYNRIINQRNALLKDIYNHQN 182 Query: 182 W---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + Q+AE G ++ R + I ++ +I + + ++ L+ Sbjct: 183 LAETLDIWDMQLAEYGTRVLERRQQFIEQVNGIISDIHYRLTGGKERICLSYESGTGGR- 241 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + L R D + T +GPHR D+ + I GS G+Q+ + Sbjct: 242 -------SLEEALKRNRDRDLRMKSTSVGPHRDDICFLSGELDIR-KFGSQGQQRTTALS 293 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA L+ P+LLLD++ + LD+ ++N L + DI + + TG D+ V Sbjct: 294 LKLAEIELVKQMIKDTPVLLLDDVLSELDKSRQNYLLDSIHDIQTVVTCTGLDEFVNHRF 353 Query: 359 NETAKFMRISNHQA 372 + K I + Sbjct: 354 SIN-KVFHIQDGTV 366 >gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF [Eubacterium rectale ATCC 33656] gi|259563365|sp|C4Z940|RECF_EUBR3 RecName: Full=DNA replication and repair protein recF gi|238874108|gb|ACR73815.1| DNA replication and repair protein RecF [Eubacterium rectale ATCC 33656] Length = 362 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 160/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + +S FRNY L + FD + I GDN GKTNILEA + + + ++ Sbjct: 1 MIIKSIQLSNFRNYEKLDISFDTETNIIYGDNAQGKTNILEAAYLSGTTKSHKGSKDKEM 60 Query: 65 TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G T E D+ ++ + + IN + I+ EL L I Sbjct: 61 IRFGEDEAHIRTIVEKNDKEYRIDMHLR-----KNGAKGVAINKMPIKKASELFGILNIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P I ERRRF+D + +D + + + + + RNRLL + + Sbjct: 116 FFSPEDLNIIKNGPAERRRFIDLELCQLDKIYLSNLSKYNKTLVQRNRLLKDIAYRPDLI 175 Query: 184 S---SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G + R E +N L+ +I + + KL L K++ S Sbjct: 176 DTLQVWDMQLLEYGRHVIKKRREFVNELNEIIQDIHSNISGGREKLIL------KYEPSI 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + +L R D +T +GPHR D++ D +GS G+Q+ + + Sbjct: 230 DDIF--FEDELLKARSRDLKLCQTTVGPHRDDMLFSV-DGVDIRKYGSQGQQRTSALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ P+LLLD++ + LD +++N L ++D + I TG D+ V + Sbjct: 287 LSEISLVKKNINSTPVLLLDDVLSELDGNRQNYLLNSLSDTQTIITCTGLDEFVKNRFQV 346 Query: 361 TAKFMRISNHQALCI 375 K + Q I Sbjct: 347 D-KVFHVVKGQVEVI 360 >gi|331700399|ref|YP_004397358.1| DNA replication and repair protein recF [Lactobacillus buchneri NRRL B-30929] gi|329127742|gb|AEB72295.1| DNA replication and repair protein recF [Lactobacillus buchneri NRRL B-30929] Length = 372 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 158/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + + FRNY L F +F+G+N GKTN+LEAI L+ R R + ++ Sbjct: 1 MKLTEIELHNFRNYVDQTLEFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTNNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + A+++G ++ +E + ++N + + L + Sbjct: 61 INWNSQT-----AQIKGRLQKRLGTVPIELDLGSKGKRAKVNHLEQAKLSTYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P I G RRRF+D + R+ ++++++ RNR L + D Sbjct: 116 FAPEDLSIVKGAPQVRRRFMDMEFAQMSNRYLYNSTQYKKILKQRNRYLKDLHYKRQKDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q++ G +I R++++ L + + +L+ + DQ Sbjct: 176 VYLDVLSDQLSAYGAEIVYQRLQLLKQLEKFAQNVHSEISQGKEQLAFDYHTTVEADQLG 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S ++ + K + + + TLIGP R DL K + + GS G+Q+ + Sbjct: 236 SVESIYQSLLKHFAAIKDKEILRSTTLIGPQRDDLHFVINGKEV-QSFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA L+ T PILLLD++ + LD+ ++ L + D Q F+T T S Sbjct: 295 VKLAEIDLMKEQTDEYPILLLDDVLSELDDFRQTHLLTAIQDK-VQTFLTTTSLSGVQQE 353 Query: 358 LNETAKFMRISNHQA 372 L + RIS Sbjct: 354 LLTNPRIFRISEGNV 368 >gi|225575694|ref|ZP_03784304.1| hypothetical protein RUMHYD_03787 [Blautia hydrogenotrophica DSM 10507] gi|225037098|gb|EEG47344.1| hypothetical protein RUMHYD_03787 [Blautia hydrogenotrophica DSM 10507] Length = 361 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 155/373 (41%), Gaps = 21/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + FRNY SL L FD I GDN GKTN+LEA+ + + + ++ Sbjct: 1 MYIESVQLKNFRNYQSLELEFDQGTNILFGDNAQGKTNVLEAVYLCGTTKSHKGSKDREM 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 S + E + D+ +K + + IN + I+ EL + Sbjct: 61 IHFDEEESHIRMIVKKEHISYKIDMHLK-----KNKAKGIAINGIPIKKARELFGIVNFV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRFLD + +D + + ++ R++ RN+LL + F Sbjct: 116 FFSPEDLNIIKNGPGERRRFLDMELCQLDRIYLNDLANYNRIVNQRNKLLKDLAFQPELQ 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 Q+A G KI R + L+ LI + Q KL +T + + Sbjct: 176 DTMDIWNQQLASHGKKIIEKRYSFVKELNELIQKIHQNLTGGTEKLEVTYEPNVE----- 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + +L + D R T +GPHR DL V I +GS G+Q+ + + Sbjct: 231 ---SNNFEGELQRQNRRDMQLRTTTVGPHRDDLCVTVNGIDIR-RYGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359 LA L+ P+LLLD++ + LD +++N L + DI Q +T T F + Sbjct: 287 LAEIYLVKKLIKDTPVLLLDDVLSELDRNRQNYLLDSIHDI--QTLITCTGLDDFVNHQF 344 Query: 360 ETAKFMRISNHQA 372 + K ++ Sbjct: 345 QINKVFKVIKGNV 357 >gi|255657642|ref|ZP_05403051.1| DNA replication and repair protein [Clostridium difficile QCD-23m63] gi|296452677|ref|ZP_06894368.1| recombination protein F [Clostridium difficile NAP08] gi|296880070|ref|ZP_06904039.1| recombination protein F [Clostridium difficile NAP07] gi|296258459|gb|EFH05363.1| recombination protein F [Clostridium difficile NAP08] gi|296428937|gb|EFH14815.1| recombination protein F [Clostridium difficile NAP07] Length = 371 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 90/374 (24%), Positives = 170/374 (45%), Gaps = 11/374 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + FRNY L L F+ + + VG NG GKTNI+E+I LS G+ FR ++ Sbjct: 1 MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S + + + G + +E + + +++N V ++ + EL +L + Sbjct: 61 VRFNSENLY-----IGGSFSKYNKYSLIELIIGKDKKGIRVNKVPLQKIQELLGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P R+ ERR F+D+ + I P++ + + ++ + + R+R+L + D + Sbjct: 116 FSPEDLRLVKEGPKERRTFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKSIHVDEALLD 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYV--QKENFPHIKLSLTGFLDGKFDQSFCA 242 + +A G I I R + I ++S+ + + ++ + + Sbjct: 176 VYDDTLARYGSYIYILRRDFIKKIASISENMHMNLTNGVERLSIRYKNQINITDEDTIDT 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + ++ KL R D S+ T G H+ DL + D + GS G+Q+ + + L+ Sbjct: 236 VYNKFLAKLSSNRPNDIESKTTRYGIHKDDLNIFINDLDARL-FGSQGQQRTASISLKLS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE-T 361 LI N P+L+LD++ + LDE ++ L ++ Q+F+T + S +E Sbjct: 295 EIELIKNEVEEYPVLILDDVFSELDEARQKLLVNNLS--NVQMFITSAEISHKKIFDEKN 352 Query: 362 AKFMRISNHQALCI 375 I N + I Sbjct: 353 VTIFNIENGDVISI 366 >gi|255527583|ref|ZP_05394447.1| DNA replication and repair protein RecF [Clostridium carboxidivorans P7] gi|296186781|ref|ZP_06855182.1| DNA replication and repair protein RecF [Clostridium carboxidivorans P7] gi|255508716|gb|EET85092.1| DNA replication and repair protein RecF [Clostridium carboxidivorans P7] gi|296048495|gb|EFG87928.1| DNA replication and repair protein RecF [Clostridium carboxidivorans P7] Length = 363 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 163/369 (44%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK+L + FRNY L + + +F+G+N GKTNILE+I + S G+ R ++ Sbjct: 1 MYIKYLQLINFRNYKELNIELNKNINVFIGNNAQGKTNILESIYYCSIGKSPRTNKDKEL 60 Query: 65 TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G ++ + + ++ +I I E + + +N + + + +L + Sbjct: 61 INWNGKEAYIKLYVSKDRIDKKIEIKIFKE-----GKKGVNVNSIKVNKISDLMGVFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182 P +I RR+FLD + + ++ ++ + +++ RN +L + + Sbjct: 116 MFSPEDLKIVKESPSHRRKFLDIELCKLSKKYYFNLVQYNKVLNERNVVLRKWDKKNLDM 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+A+ G I R + L+ + + + K S Sbjct: 176 LQVYDEQLAKYGAYIVKTRDHYVKKLTEKGIIIHKNITSGSENIEFNYITGVK---SIDN 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +EE L + R D R T GPHR D + + T ++GS G+Q+ ++ I A Sbjct: 233 SEEEILNLLENNRLKDFEKRITSFGPHRDDFSIKI-NGVDTRSYGSQGQQRTSVLTIKFA 291 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNET 361 +I T G P+LLLD++ + LD +++ + ++DI Q F+T T + + ++L + Sbjct: 292 SLEIIKETIGEYPVLLLDDVLSELDSNRQKYILNSISDI--QTFITCTGIEDIKNNLKKD 349 Query: 362 AKFMRISNH 370 ++ + Sbjct: 350 SQLFVVEKG 358 >gi|227523342|ref|ZP_03953391.1| recombination protein F [Lactobacillus hilgardii ATCC 8290] gi|227089448|gb|EEI24760.1| recombination protein F [Lactobacillus hilgardii ATCC 8290] Length = 373 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 161/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++K + + FRNY L F +F+G+N GKTN+LEAI L+ R R ++ ++ Sbjct: 1 MRLKDIALHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + A+++G + +E + +IN + + L + Sbjct: 61 INWQSQT-----AQLKGTIQKQLGKVPIELDLGTKGKRAKINHLEQAKLSSYVGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P I G RR+F+D + R+ +++++R RNR L + D Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q++ G +I R++++ L + + L+ +Q Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGFAKNVHTEISQGKEALTFLYQTVVPDEQLT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S + + K+ D ++ + TL+GPHR DL K + + GS G+Q+ + Sbjct: 236 SIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEV-QSFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA L+ T PILLLD++ + LD+ ++ L + D Q F+T T S Sbjct: 295 VKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQDK-VQTFLTTTSLSGVQQE 353 Query: 358 LNETAKFMRISNHQA 372 L K RI+N + Sbjct: 354 LLSNPKIFRIANGKV 368 >gi|150014896|ref|YP_001307150.1| recombination protein F [Clostridium beijerinckii NCIMB 8052] gi|189039620|sp|A6LPB4|RECF_CLOB8 RecName: Full=DNA replication and repair protein recF gi|149901361|gb|ABR32194.1| DNA replication and repair protein RecF [Clostridium beijerinckii NCIMB 8052] Length = 367 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 170/371 (45%), Gaps = 12/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +N+ +RNY L + +FVGDN GKTNILE++ + + + R + ++ Sbjct: 1 MYVKNINLLNYRNYKKLSVELTENVNVFVGDNAQGKTNILESVYYCAFAKSHRTSKDKEL 60 Query: 65 TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 S ++ S ++ DI+I RD + + +++N++ + + EL + Sbjct: 61 INWENSTAYISLLIGKNRLDKKIDINI---LRDGK--KAIKVNNIKVNKIGELFGIFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P ++ RRR LD + ++P + ++ + +++ RN LL F Sbjct: 116 MFSPEDLKVIKEAPSLRRRLLDMELSQVNPNYYFNLVQYNKVLGERNILLKSRSFSEDIL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++ I R+E IN ++ ++ +++ + Sbjct: 176 DVYDIQLSKYADYIISKRLEYINKINFYGDIIHREITSGKEEINFKYNCTVNLENG--KF 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K+ Y KKL D + D T +GPHR D V + I GS G+Q+ ++ + A Sbjct: 234 KDNYLKKLKDNIQKDREKGLTSVGPHRDDFSVFINNIDTKI-FGSQGQQRTSILTMKFAS 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362 ++I TG P+LLLD++ + LD +++ + R + DI Q +T + + D L++ Sbjct: 293 LKIIREITGEYPVLLLDDVLSELDLNRKKYILRSIKDI--QTIITCAGIEDLNDYLDDKV 350 Query: 363 KFMRISNHQAL 373 K +SN Q L Sbjct: 351 KIFNVSNGQIL 361 >gi|307243415|ref|ZP_07525572.1| putative recombination protein F [Peptostreptococcus stomatis DSM 17678] gi|306493225|gb|EFM65221.1| putative recombination protein F [Peptostreptococcus stomatis DSM 17678] Length = 371 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 179/374 (47%), Gaps = 11/374 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +RNY L + F+ + + +G NG GKTN++EAI F+S GR FR ++ Sbjct: 1 MYINSLKLVNYRNYDDLLVEFNKKVNLIIGMNGQGKTNLVEAIGFMSIGRSFRTNKDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + + ++ K+E + + +++N V I+ + EL +L + Sbjct: 61 IKFSAENLYCGC-----NFTRNNMDKKIEIVVAKDKKGVKVNGVSIKSMQELLGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P R+ ERR F+D+ + I PR+ + ++ +++ RN +L D + Sbjct: 116 FSPEDLRLVKDGPKERRSFIDKEISQIMPRYYSLLTNYNKILHQRNTVLKSYRIDENLLD 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQSFCA 242 + M+ +I + R + I +S + E + L++ +D + Q Sbjct: 176 VYDETMSTYASEIYLIRNKFIEKISKISSEIHKNLTMDKENLTIIYKNQVDLESGQDASQ 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++ + +KL + R D ++R T +GPH+ D+ + D + + +GS G+Q+ + + L+ Sbjct: 236 VRLKLLEKLRESRGGDMITRTTKVGPHKDDMKIFINDIDVRM-YGSQGQQRTASISLKLS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ET 361 LI G P+L+LD++ + LD+ ++ L + DI Q+F+T D + L+ + Sbjct: 295 EIELIKQEVGDYPVLILDDVFSELDQTRQKMLVEKLEDI--QMFVTSADPLHKNILDIDD 352 Query: 362 AKFMRISNHQALCI 375 I N + + + Sbjct: 353 YSIFNIENGRLVGV 366 >gi|167748046|ref|ZP_02420173.1| hypothetical protein ANACAC_02784 [Anaerostipes caccae DSM 14662] gi|167652526|gb|EDR96655.1| hypothetical protein ANACAC_02784 [Anaerostipes caccae DSM 14662] Length = 361 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 91/373 (24%), Positives = 163/373 (43%), Gaps = 19/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + +RNY L + F + I GDN GKTNILEA+ + + R + ++ Sbjct: 1 MYIQSLELKNYRNYDRLIIEFSSGTNILYGDNAQGKTNILEAVYLGATTKSHRGSKDKEI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + R+ M+ I + + R+ + I+ + I+ +L + + + Sbjct: 61 IRFGENE---SHIRIHLMKQDIGHQIDMHLKKSRT-KGAAIDRIPIKRSSDLLGFVPVIF 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I ERR+FLD + ++ + ++ + R+M RN LL + + Sbjct: 117 FSPEDLSIIKNGPSERRKFLDIELSQLEKMYLHQLSSYNRVMAQRNNLLKQLAYQRELLD 176 Query: 185 S---IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + + Q+ + G ++ R + I L+ +I E + K+ L +D Sbjct: 177 TLDSWDLQLVKYGSEVIRYRQKFIEDLNEIIREIHKNLTGKKEKIVLKYDYSVNYD---- 232 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 E+ L R++D T GPHR D+ I GS G+Q+ + + L Sbjct: 233 ----EFLTVLQRKREIDLKYASTGAGPHRDDIEFLVNGIDIR-KFGSQGQQRTAALSLKL 287 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNE 360 A L+ TG PILLLD++ + LD ++N L + DI Q +T T F +S + Sbjct: 288 AQIELVKRQTGETPILLLDDVLSELDSSRKNYLLDSIKDI--QTLITCTGLEEFINSHLQ 345 Query: 361 TAKFMRISNHQAL 373 K ++ + + + Sbjct: 346 IDKMFQVKSGKIV 358 >gi|253581084|ref|ZP_04858344.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847620|gb|EES75590.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 361 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 154/373 (41%), Gaps = 21/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + FRNY SL L IF G+N GKTNILEA+ + + + D+ Sbjct: 1 MYIESVQLKNFRNYDSLELDLAQGTNIFYGNNAQGKTNILEALYLCGTTKSHKGSRDKDM 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G S + + + D+ +K + + IN + IR EL + + Sbjct: 61 IQFGKDESHIRMMVKRDELSYRIDMHLK-----KNKAKGVAINGLPIRKASELFGVVNLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRFLD + +D + + + ++ RN+LL + S Sbjct: 116 FFSPEDLNIIKNGPGERRRFLDLELCQLDKIYLTDLASYNHIVNQRNKLLKDLSVQPSLK 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + QMAE G KI R E I L+ + + +L++ D Sbjct: 176 DTLDIWDIQMAEYGRKIIDKRSEFIKELNETVRKIHGNLTGGLEELNVIYEPD------- 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E+ + R+ D R T GPHR DL V I +GS G+Q+ + + Sbjct: 229 -CTAEKLESTICANRERDMRMRLTSAGPHRDDLCVMANGIDIR-KYGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359 L+ ++ P+LLLD++ + LD ++N L ++DI Q +T T F Sbjct: 287 LSEIYIVKRKIKDTPVLLLDDVLSELDSSRQNYLLDSISDI--QTLITCTGLDDFISHQF 344 Query: 360 ETAKFMRISNHQA 372 + K ++ Sbjct: 345 QINKVFQVVQGTV 357 >gi|153007350|ref|YP_001368565.1| recombination protein F [Ochrobactrum anthropi ATCC 49188] gi|151559238|gb|ABS12736.1| DNA replication and repair protein RecF [Ochrobactrum anthropi ATCC 49188] Length = 387 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 167/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 R+ I+ L + FRNYA L L H + G+NG GKTN++EAISFLSPGRG RRA+Y Sbjct: 11 PERVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70 Query: 62 ADVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 DV R S F+ A ++ M G A+I R ++IN + D++ + Sbjct: 71 DDVARANSLDGFAIHAALDCMIYGEAEIG-TGTAGGGEGGRKVRINGIAG-SGDDMLDYA 128 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 RI W+VPSMD +F+G + +RRRFLDRMV AID H +R++D+E+ MR RNRLL +G D Sbjct: 129 RILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDD 188 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 W +IE+QMAELG I AR E + ++++I + FP L G L+ + + ++ Sbjct: 189 QWLDAIESQMAELGTAIAAARAEAMRLIAAMIERLPVEGPFPKADCFLEGTLEQRINVEA 248 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L+E++ + L DGR D + RTL GPHR+DLIV + K++ A STGEQK +L+G+ Sbjct: 249 ALDLEEDFRRTLRDGRARDRAAGRTLEGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGL 308 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHARL + +G APILLLDEI+AHLD +R ALF I+ ++G Q FMTGTD+++F++L Sbjct: 309 VLAHARLTAELSGMAPILLLDEIAAHLDTGRRAALFGILDELGGQAFMTGTDRALFEALE 368 Query: 360 ETAKFMRISNH 370 A+F +S Sbjct: 369 GEAQFFNVSAG 379 >gi|302384448|ref|YP_003820270.1| DNA replication and repair protein RecF [Clostridium saccharolyticum WM1] gi|302195076|gb|ADL02647.1| DNA replication and repair protein RecF [Clostridium saccharolyticum WM1] Length = 361 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 157/374 (41%), Gaps = 19/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY L + F I GDN GKTN+LEAI + + R + ++ Sbjct: 1 MIIESIELKNYRNYDELHMDFSQGTNILYGDNAQGKTNVLEAIYVCATTKSHRGSKDKEI 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S R + D+ +K + + +N V I+ EL + + Sbjct: 61 IQFDRDESHIKLNIRKNNIPYRIDMHLK-----KNKAKGVAVNGVPIKKASELFGIVNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P + ERRRF+D + ++ + ++ + R++ RN+LL + F + Sbjct: 116 FFSPEDLNLIKNGPAERRRFVDLELCQLNRYYVHSLVQYNRIVTQRNKLLKDMAFRPDYE 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ + G ++ R E I L +I + + L + + Sbjct: 176 ETLDVWDMQLVQYGKEMIGYRKEFIEQLDGIIGSIHGQLSGEKEHLRILYEPNVG----- 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 EE+ + + R+ D + TL GPHR DL I +GS G+Q+ + + Sbjct: 231 ---AEEFEEAIRRSRQQDMKQKTTLTGPHRDDLSFVINGIDIR-RYGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ T PILLLD++ + LD ++N L + I + I TG ++ V + Sbjct: 287 LAEIELVEKTVFDYPILLLDDVLSELDNSRQNQLLAGINHIQTVITCTGLEEFVRNRFPV 346 Query: 361 TAKFMRISNHQALC 374 K R+ + Sbjct: 347 D-KIFRVVSGTVGS 359 >gi|167759581|ref|ZP_02431708.1| hypothetical protein CLOSCI_01938 [Clostridium scindens ATCC 35704] gi|167662808|gb|EDS06938.1| hypothetical protein CLOSCI_01938 [Clostridium scindens ATCC 35704] Length = 363 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 97/374 (25%), Positives = 162/374 (43%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI+ L + FRNY L+L FD IF GDN GKTNILEA+ + R A D+ Sbjct: 1 MKIESLKLKNFRNYDLLKLEFDEATNIFYGDNAQGKTNILEAVYLSGTTKSHRGAKDRDL 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S G+ D+ +K S + + IN + IR EL + + Sbjct: 61 IKFDQNESHIEAIVERNGINYQIDMHLK-----KNSPKGIAINKMPIRKASELFGIVNLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + +D + + ++ R++ RN LL + F Sbjct: 116 FFSPEDLNIIKNGPSERRRFVDLELSQLDKVYLNDLSNYNRIVNQRNHLLKDMGFGKQQD 175 Query: 183 ----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + Q+ + G +I R +++ ++ +I K L + ++ Sbjct: 176 LMDTLDIWDLQLIQYGTRIIDRRKKIVEEINKIISSIHGKLTGGKENLQVI------YEP 229 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S +L + L + D + T +GPHR D+ D I +GS G+Q+ + Sbjct: 230 SNGSLT--LEQALARNLERDLRMKSTSVGPHRDDICFMAGDLDIR-RYGSQGQQRTAALS 286 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + L+ L+ P+LLLD++ + LD+ ++N L + DI + I TG D+ V Sbjct: 287 LKLSEIELVKQAIHDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVDEFVNHRF 346 Query: 359 NETAKFMRISNHQA 372 + K + N Q Sbjct: 347 SIN-KVFHVQNGQV 359 >gi|326789143|ref|YP_004306964.1| DNA replication and repair protein RecF [Clostridium lentocellum DSM 5427] gi|326539907|gb|ADZ81766.1| DNA replication and repair protein RecF [Clostridium lentocellum DSM 5427] Length = 360 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 164/370 (44%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L ++ FRNY L + D IF GDN GKTNILE+I + R R ++ Sbjct: 1 MYIKELALTNFRNYEELNISLDKGINIFKGDNAQGKTNILESIYLCATARSHRTHKEKEI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S A V+ + ++ + IN + I + EL L I Sbjct: 61 IRWNEES-----AHVKLAVQKNYVQDIIDFHLTSKAKSAIINRMPIGRLGELFGCLNIVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSW 182 P ++ ERRRF+D + ID + + + ++++ RN L + D+S Sbjct: 116 FSPEDLQLIKNSPKERRRFIDIELCQIDKLYYYSLRQYHKVLKQRNLALKQYFSNKDASM 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+ E + R E I ++ + + + KL + + + Sbjct: 176 LDVWDMQLEEYASAVIKKRHEFIQEINEIASKIHDDISGHKEKLQVIYEPNVEVR----- 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++ KK+ R+ D + + T IGPHR DL D + +GS G+Q+ V++ + LA Sbjct: 231 ---DFGKKILKYREKDILYQTTSIGPHRDDLTFLINDMDVK-TYGSQGQQRSVVLSMKLA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++ G PILLLD++ + LD +++ LF+ +I + I TG ++SV+++ + Sbjct: 287 ELNIMKKYIGEEPILLLDDVLSELDHNRQGDLFKYTQNIQTLITCTGIEQSVWNT-QKIG 345 Query: 363 KFMRISNHQA 372 K + Sbjct: 346 KLYNVKAGSI 355 >gi|260584260|ref|ZP_05852007.1| DNA replication and repair protein RecF [Granulicatella elegans ATCC 700633] gi|260157778|gb|EEW92847.1| DNA replication and repair protein RecF [Granulicatella elegans ATCC 700633] Length = 369 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 92/375 (24%), Positives = 167/375 (44%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L ++ FRNY L L F IF+G+N GKTN++E+I L+ + R ++ Sbjct: 1 MRLVELQLNHFRNYEELFLEFGKGVHIFIGENAQGKTNLMESIYTLAMTKSHRTNQDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A ++G +I LE R + ++N + + + L + Sbjct: 61 IMWNEDT-----ATIKGKVEKKISNIPLEIRFSNKGKIGRVNHLEQKKLSSYLGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P + G RR+F+D + ++P + +++++RL++ RN L + S Sbjct: 116 FAPENLELVKGAPANRRKFMDMELGQMNPIYLHELVEYQRLIKQRNHYLKQLAIKKSSAD 175 Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q+ E I R+E + L +L ++ + + SL ++ Sbjct: 176 LYLEVLTEQVIEKATAILNHRLEFMEQLEALARPIHEQISLGREEFSLKYQTSLSIEKGM 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S +KE Y K+ +K + TL+GPHR DLI DK + GS G+Q+ ++ Sbjct: 236 SQDEVKELYQKQFEAVQKRELEQASTLVGPHRDDLIFYLNDKPV-QNFGSQGQQRSTVLS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA L++ TG PILLLD++ + LD+D++ L + + + Q F+T T Sbjct: 295 LKLAEIELMNIATGEYPILLLDDVLSELDDDRQTHLIKAIENK-VQTFITTTSLDGIRKQ 353 Query: 358 LNETAKFMRISNHQA 372 I Q Sbjct: 354 FINEPIVYPIHQGQV 368 >gi|194467406|ref|ZP_03073393.1| DNA replication and repair protein RecF [Lactobacillus reuteri 100-23] gi|194454442|gb|EDX43339.1| DNA replication and repair protein RecF [Lactobacillus reuteri 100-23] Length = 374 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 151/373 (40%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRNY L + F+ + +G N GKTN+LEAI LS + R ++ ++ Sbjct: 1 MILTELHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S A + G + I LE + + ++N + + + L Sbjct: 61 INWQEKS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR F+DR + ++ + L+R +N+ L + D Sbjct: 116 FAPEDLSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYKQQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLDGKFDQ 238 + Q+A G ++ IAR + L + Q+ + ++L L D Sbjct: 176 VLLGVLSDQLAAFGAEVIIARQHFLKHLEGWAADLHQEISLNKESLRLEYVNQLKVSDDT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + K D + + T+ GPHR D+ DK + A GS G+Q+ + Sbjct: 236 TVEEAYQALFKLYQDNEQREIEQGTTIYGPHRDDIRFLVNDKNV-QAFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG P+LLLD++ + LD ++ L + + Q F+T T S Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQNK-VQTFLTTTSLSDVARQ 353 Query: 358 LNETAKFMRISNH 370 L I + Sbjct: 354 LINEPTIFEIEHG 366 >gi|89074700|ref|ZP_01161158.1| recombination protein F [Photobacterium sp. SKA34] gi|89049464|gb|EAR55025.1| recombination protein F [Photobacterium sp. SKA34] Length = 360 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 92/369 (24%), Positives = 163/369 (44%), Gaps = 13/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN AS L A VG NG GKT++LEAI +L GR FR + V Sbjct: 1 MALTRLMVHDFRNIASCDLALAAGFNFLVGPNGSGKTSVLEAIHYLGHGRSFRSHLTSRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV + + I + + D + ++I + + +L + L + Sbjct: 61 IRHEQAELF-IHGRVVDNQTQLMLPIGINKKRDGTT-DVKIAGESNQKLAQLAQILPLQL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G RR F+D VF ++P+ +RL + RN LL S Sbjct: 119 ITPEGFDLLIGGPKYRRAFIDWGVFHVEPKFYHAWARLKRLTKQRNALLKTARSYRE-LS 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I++ R + I+A+ E Q P + L + + + Sbjct: 178 YWDQELALLAEEISVWRKDYISAVKEKAAEIFQ-VFLPEFDIQLGFYRGWEKETP----- 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T+ GPH++DL + + S G+ K+++ + LA Sbjct: 232 --YAELLQRNFERDCQLGYTVSGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNETAK 363 ++ TG I L+D+ ++ LD +R L + + + +Q+F++ D V D L+E K Sbjct: 289 LHLTEATGKQCIYLIDDFASELDSQRRALLAQRLKETNAQVFISAISDDQVADMLDENGK 348 Query: 364 FMRISNHQA 372 + + + Sbjct: 349 LFHVEHGKI 357 >gi|241895510|ref|ZP_04782806.1| recombination protein F [Weissella paramesenteroides ATCC 33313] gi|241871256|gb|EER75007.1| recombination protein F [Weissella paramesenteroides ATCC 33313] Length = 383 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 161/376 (42%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L ++ FRNY SL + F + +F+G N GKTN+LEAI L+ R R ++ ++ Sbjct: 1 MELMSLKLNNFRNYESLDVSFSSGVNVFLGPNAQGKTNLLEAIYVLALTRSHRTSTDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A+V G + L + + +IN + + L + Sbjct: 61 ISWQAKE-----AQVAGTVARQYSDVPLSLKFTNKGKKARINHLNQAKLANYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR F+DR + ++ ++ +++ RNR L + D Sbjct: 116 FAPEDLDLVKGAPSVRRNFIDREFSQMSAKYLYTANQYKEVLKQRNRYLKQLQSKQASDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINAL--SSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + + Q+ ++ RV +I L ++ ++ +N + + L+ + Sbjct: 176 LYLDVLTEQLVNFASELITRRVTLIKKLDAAAQPIQAAITQNNEQLHIQYVSQLNNESLA 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++K+ + R+ + + TL+GPHR DL D + + GS G+Q+ + Sbjct: 236 NIESVKQAMLSRFKQLREREIIMGTTLLGPHRDDLRFDVNEHDV-ANFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG P+LLLD++ + LD D++ L + D Q F+T S Sbjct: 295 VKLAEIDLMKEETGEYPVLLLDDVLSELDSDRQTHLLAAMQDK-VQTFITTPSLSDVARQ 353 Query: 358 LNETAKFMRISNHQAL 373 L K + + + Sbjct: 354 LIHEPKIFHVDSGHLV 369 >gi|259502127|ref|ZP_05745029.1| recombination protein F [Lactobacillus antri DSM 16041] gi|259169940|gb|EEW54435.1| recombination protein F [Lactobacillus antri DSM 16041] Length = 373 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 147/376 (39%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRNY + F + +G N GKTN+LEAI LS R R + ++ Sbjct: 1 MILSELHLHHFRNYEDQTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTTNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S A + G+ + LE + + + ++N + + + L Sbjct: 61 INWREKS-----ASISGVVQKTSGKVPLELQFTKEGKRAKVNHLEQARLAQYIGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D + ++ + L+R RN+ L + D Sbjct: 116 FAPEDLSLVKGAPAVRRRFMDMEFSQMSSKYLYNASQYRSLLRQRNKYLKQLKYGQQHDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + Q+A G ++ +AR + L + + + KL L L + Sbjct: 176 VLLDVLSDQLAAYGAELVVARFHFLQQLEKWAADLHYQISLNAEKLRLVYATQLKVTAET 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + ++ + + + T+ GP R D+ K + + GS G+Q+ + Sbjct: 236 TVDDAYQQLLTIFKENKGREIDQGSTMFGPQRDDIRFLVNGKNV-QSFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG P+LLLD++ + LD ++ L + D Q F+T T S Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDTVRQTHLLTAIQDK-VQTFLTTTSLSDVARQ 353 Query: 358 LNETAKFMRISNHQAL 373 L I N + Sbjct: 354 LINEPTIFNIKNGTLI 369 >gi|148543247|ref|YP_001270617.1| recombination protein F [Lactobacillus reuteri DSM 20016] gi|184152659|ref|YP_001841000.1| recombination protein F [Lactobacillus reuteri JCM 1112] gi|227364310|ref|ZP_03848403.1| recombination protein F [Lactobacillus reuteri MM2-3] gi|325683509|ref|ZP_08163025.1| recombination protein F [Lactobacillus reuteri MM4-1A] gi|166918724|sp|A5VHF6|RECF_LACRD RecName: Full=DNA replication and repair protein recF gi|226737809|sp|B2G4Y8|RECF_LACRJ RecName: Full=DNA replication and repair protein recF gi|148530281|gb|ABQ82280.1| DNA replication and repair protein RecF [Lactobacillus reuteri DSM 20016] gi|183224003|dbj|BAG24520.1| DNA replication and repair protein RecF [Lactobacillus reuteri JCM 1112] gi|227070623|gb|EEI08953.1| recombination protein F [Lactobacillus reuteri MM2-3] gi|324977859|gb|EGC14810.1| recombination protein F [Lactobacillus reuteri MM4-1A] Length = 374 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 150/373 (40%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRNY L + F+ + +G N GKTN+LEAI LS + R ++ ++ Sbjct: 1 MILTELHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S A + G + I LE + + ++N + + + L Sbjct: 61 INWQEKS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RR F+DR + ++ + L+R +N+ L D Sbjct: 116 FAPEDLSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYRQQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLDGKFDQ 238 + Q+A G ++ IAR + L + Q+ + ++L L D Sbjct: 176 VLLGVLSDQLAAFGAEVIIARQHFLKHLEGWAADLHQEISLNKESLRLEYVNQLKVSDDT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + K D + + T+ GPHR D+ DK + A GS G+Q+ + Sbjct: 236 TVEEAYQALFKLYQDNEQREIEQGTTIYGPHRDDIRFLVNDKNV-QAFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG P+LLLD++ + LD ++ L + + Q F+T T S Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQNK-VQTFLTTTSLSDVARQ 353 Query: 358 LNETAKFMRISNH 370 L I + Sbjct: 354 LINEPTIFEIEHG 366 >gi|163867417|ref|YP_001608614.1| recombination protein F [Bartonella tribocorum CIP 105476] gi|161017061|emb|CAK00619.1| DNA replication and repair protein [Bartonella tribocorum CIP 105476] Length = 377 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 166/375 (44%), Positives = 229/375 (61%), Gaps = 6/375 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +++ ++ L + +RNY+ + F QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y Sbjct: 5 VHKVSVRQLKLLRYRNYSFFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAY 64 Query: 62 ADVTRI-GSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +D++ I G F FA +E + G I LE D+ R + I+ V D L + Sbjct: 65 SDISFIDGGGEGFVVFACLECALYGEVKIGTALEVSDN--SRKVHIDGVN-EPSDCLTDY 121 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 IS L PSMD +F+G S+ERRRFLDRMV AIDP H RR+ D+++ MR RNRL +G D Sbjct: 122 CHISILTPSMDGLFTGPSLERRRFLDRMVLAIDPLHSRRIADYDKTMRARNRLFLDGNED 181 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQ 238 ++W +++E QMAEL I+ AR+++I L+ + + + FP L + GFL+ D Sbjct: 182 NAWFNALEKQMAELATAISAARIDVIRLLNDMFTQMPSQIPFPRAFLQIDGFLETALGDI 241 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S ++E++ L R MD + RTL GPHR+DL V Y DK STGEQK +L G Sbjct: 242 SATEVEEQFCDLLRRNRAMDRAAGRTLEGPHRTDLQVFYADKNRAATSCSTGEQKALLTG 301 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + L HARL + APILLLDE++AHLD +R ALF I+ D+ Q FMTGTD+ +FD L Sbjct: 302 LVLCHARLTGMISQRAPILLLDEMAAHLDSHRRAALFDILDDLSVQTFMTGTDRLLFDDL 361 Query: 359 NETAKFMRISNHQAL 373 A+F I + L Sbjct: 362 KGRAEFFEIKDGALL 376 >gi|315037234|ref|YP_004030802.1| recombination protein F [Lactobacillus amylovorus GRL 1112] gi|325955725|ref|YP_004286335.1| recombination protein F [Lactobacillus acidophilus 30SC] gi|312275367|gb|ADQ58007.1| recombination protein F [Lactobacillus amylovorus GRL 1112] gi|325332290|gb|ADZ06198.1| recombination protein F [Lactobacillus acidophilus 30SC] gi|327182553|gb|AEA31000.1| recombination protein F [Lactobacillus amylovorus GRL 1118] Length = 375 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 155/376 (41%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + FRN L + FD IF+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MYLDHFTVQNFRNLKKLDVDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F +A + G + + + L + + + IN V + + L Sbjct: 61 I-----GFDGEYANLLGHVQKSQVDLTLRVLITKKGKKVWINRVEQSKLSKYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D+ I+P + + +++ +N L + D Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINPEYLYFASKYRQVLMQKNNYLKQLSKGKAKDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL---DGKFD 237 + + Q+A + ++ R + + LS + + KL++ D + D Sbjct: 176 VFLDVLSDQLAGIAAEVISRRFKFLRYLSHYASDAYAHISLGGEKLAIAYHPSVSDIEAD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + + ++ + + T GPHR D+ K + + S G+Q+ + + Sbjct: 236 DNTETIYQKILASFERNKATEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + + I + + Sbjct: 354 EIIKKPRVYHIQSGKI 369 >gi|307942710|ref|ZP_07658055.1| DNA replication and repair protein RecF [Roseibium sp. TrichSKD4] gi|307773506|gb|EFO32722.1| DNA replication and repair protein RecF [Roseibium sp. TrichSKD4] Length = 379 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 152/370 (41%), Positives = 234/370 (63%), Gaps = 6/370 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L+++ FRNYASL L AQ FVG NG GKTNILEA+S+L+ GRG RRA+ AD+T Sbjct: 8 RLNRLSLTNFRNYASLDLDLAAQLVAFVGANGTGKTNILEAVSYLTAGRGLRRANLADIT 67 Query: 66 -RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +S ++V+ + D+SI + + + R ++I+ V R D L ++RI W Sbjct: 68 CKQVQEGGWSVASKVD--QDGLDVSIGTGLKQNEAGRRVRIDGVDQRTSDSLLDYVRILW 125 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MD +F+G +RRRFLDR+ +++P H R++ FE+ +R RNRLL +G +S+ + Sbjct: 126 LIPAMDGLFTGPGSDRRRFLDRLTLSLNPAHGRQVSSFEKALRQRNRLLEQG-GSASYLT 184 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD-QSFCA 242 ++E Q+AELG + ++R E ++ L + E + FP L LTG + + + S Sbjct: 185 AVEQQVAELGTSVALSRRETVSLLQGTLSEQAELGLPFPIAGLELTGDFEAETEGLSASD 244 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++ + K L DGR D + RTL GPH SDL V + K + + STGEQK +L+G+ LA Sbjct: 245 QEDHFRKLLEDGRPRDRAAGRTLTGPHLSDLHVRHTAKDMPASQSSTGEQKALLIGLILA 304 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L ++ +G PILLLDE++AHLD ++R ALF + +G Q+FMTGTD+S+F+SL + Sbjct: 305 HADLSASVSGLTPILLLDEVAAHLDPNRREALFARLDALGCQVFMTGTDESLFESLPIPS 364 Query: 363 KFMRISNHQA 372 + I + +A Sbjct: 365 QIFAIEDGKA 374 >gi|209883687|ref|YP_002287544.1| DNA replication and repair protein RecF [Oligotropha carboxidovorans OM5] gi|209871883|gb|ACI91679.1| DNA replication and repair protein RecF [Oligotropha carboxidovorans OM5] Length = 382 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 137/374 (36%), Positives = 205/374 (54%), Gaps = 7/374 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L+++EFR+Y + + + + VG NG GKTN LEAIS L+PGRG RRA + D+ Sbjct: 5 RILRLSLTEFRSYHAASVRPQSDLVVLVGPNGAGKTNCLEAISLLAPGRGLRRARFEDIA 64 Query: 66 RI---GSPSFFSTFARVEGMEGLADISIKL---ETRDDRSVRCLQINDVVIRVVDELNKH 119 ++ A VEG GLA + + + R +I+ + +H Sbjct: 65 NRAGDDGDGSWAVSAEVEGALGLATLGTGIDAPSAEGGNAKRRARIDREAVSSASAFGEH 124 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 LR+ WL P+MD +F+G + ERRRF DR+V AID H R+ ER +R RNRLL + FD Sbjct: 125 LRMVWLTPAMDGLFTGPASERRRFFDRLVLAIDKDHSSRVSALERSLRSRNRLLEDRNFD 184 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQ 238 WC +IE + AEL V + R + L+ ++ FP +++L G+++ + Sbjct: 185 PHWCEAIERETAELAVAVAAQRGHTLRRLAGMLAARGATSVFPSARITLDGWMENALMSE 244 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 A+++ Y L R +D+ + RTL GPH +DL V Y K + STGEQK +L+G Sbjct: 245 PATAVEDRYRDILRKSRLLDAAAGRTLNGPHLTDLHVIYAPKNMPAKEASTGEQKALLIG 304 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LAHA L++ TG P+LLLDE+ AHLD +R ALF + +G Q++MTG D + F Sbjct: 305 LILAHASLVAEMTGIVPLLLLDEVVAHLDPRRRAALFDELATLGGQVWMTGADPAAFAEA 364 Query: 359 NETAKFMRISNHQA 372 A+ + + Sbjct: 365 GSRAERFDVEDGAI 378 >gi|154250461|ref|YP_001411285.1| DNA replication and repair protein RecF [Parvibaculum lavamentivorans DS-1] gi|154154411|gb|ABS61628.1| DNA replication and repair protein RecF [Parvibaculum lavamentivorans DS-1] Length = 412 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 146/376 (38%), Positives = 220/376 (58%), Gaps = 6/376 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 + R ++ L +++FR+YA L D + + G+NG GKTN+LEA+S LSPGRG R A+Y Sbjct: 30 SPRARLSRLVVTDFRSYARAELALDGRPVVLTGENGAGKTNLLEAVSLLSPGRGLRGAAY 89 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKH 119 A++ R ++ A +E G + +E R ++I+ L H Sbjct: 90 AEIARDNGEGGWAVAATLEAEHGPVRLGTGIEPGMAPSSRSRSVRIDGEPA-GPSALAAH 148 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 LRI WL P+MDR+F + ERRRFLDR+V DP H R +ER +R R++LL + FD Sbjct: 149 LRIVWLTPAMDRLFVEGASERRRFLDRLVMGFDPAHGTRAAAYERALRERSKLLADDVFD 208 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 +W S +E+QMAE GV + AR+E++ L ++ + FP ++L G L+ ++ Sbjct: 209 DAWLSGLESQMAEHGVALAAARLEIVARLRG-ALDVAPEGPFPRAHVALEGSLETALAEA 267 Query: 240 FCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 E+ + +L + R D+ + R L GPHRSDL+V + K STGEQK +L+G Sbjct: 268 AAVDVEDGFRARLAEMRGRDAAAGRALDGPHRSDLLVRHTAKDREARQCSTGEQKALLIG 327 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 I LA+ARL++ G AP+LLLDE++AHLD +R ALF + +G Q FMTGTD S+F++L Sbjct: 328 IVLANARLLAAM-GRAPLLLLDEVAAHLDAGRRAALFDEIVSLGLQAFMTGTDPSLFETL 386 Query: 359 NETAKFMRISNHQALC 374 E A+ +R+++ Sbjct: 387 GERAQDLRVAHGTIQS 402 >gi|220930854|ref|YP_002507762.1| DNA replication and repair protein RecF [Halothermothrix orenii H 168] gi|254790480|sp|B8CZN7|RECF_HALOH RecName: Full=DNA replication and repair protein recF gi|219992164|gb|ACL68767.1| DNA replication and repair protein RecF [Halothermothrix orenii H 168] Length = 375 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 166/374 (44%), Gaps = 15/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + +FRN + D + +FVG NG GKTN LEA+ + R + ++ Sbjct: 1 MYIDRIYLKDFRNLTENLIKLDNRLNVFVGLNGQGKTNFLEAVYLMGTASSHRTNADREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R V+ E +K+ ++ V+ L+INDV V EL +L + Sbjct: 61 IRWNQDRAVVQLYLVKRDEK-----LKISLEINKKVKKLEINDVPQERVSELLGNLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P ++ RR+FLD + + P + + + ++ RN LL E D+ Sbjct: 116 FSPEDLKLVKEGPHFRRKFLDTELSQVKPYYHYLLKKYNHILSQRNNLLKELMTGNKSDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLSLTGFLDGK-FD 237 + + Q+ E+G KI R+E+I+ L + + + +I LS L + + Sbjct: 176 TLLEVWDEQLVEIGAKIIQNRIEVIDKLKILARLSHRQITDGLENITLSYESSLSDRIEE 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + +K + KL + R + TL GP R DL + I +GS G+Q+ + Sbjct: 236 KELEEIKIIFRNKLVNNRNEEITRGYTLAGPQRDDLKITMNGIDIR-KYGSQGQQRTAAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA + + G P+LLLD++ + LD +R+ L I+ Q F+T TD + Sbjct: 295 SLKLAELEFMKSEQGEYPVLLLDDVFSELDNKRRHRLIDIMAH-RVQTFITATDFFNLNE 353 Query: 358 LNETA-KFMRISNH 370 +N + K ++ N Sbjct: 354 INTPSIKVFKVRNG 367 >gi|210614351|ref|ZP_03290170.1| hypothetical protein CLONEX_02384 [Clostridium nexile DSM 1787] gi|210150695|gb|EEA81704.1| hypothetical protein CLONEX_02384 [Clostridium nexile DSM 1787] Length = 365 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 166/372 (44%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRNY L + FDA IF GDN GKTNILE+I + R D+ Sbjct: 1 MIVKSLKLKNFRNYNLLNIEFDAATNIFCGDNAQGKTNILESIYLSGTTKSHRGTKDRDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + G A +E + I +++ + S + + IN + IR EL + I Sbjct: 61 IQFGHDE-----AHIETVVEKNGIPFQIDMHLKKNSPKGIAINKIPIRKASELFGIINIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + +D + + ++ R++ RN+LL + Y + Sbjct: 116 FFSPEDLNIIKNGPAERRRFIDLELAQLDKLYLSDLSNYNRIINQRNKLLKDVYNRNDLL 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ + G KI R + I ++ +I E +K +L L ++ Sbjct: 176 ETLEIWDLQLIQYGNKIIERRKQFIGQVNEIISEVHRKLTGGREELKL------YYEPGI 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L E+ K L R+ D + T +GPHR D+ D I GS G+Q+ + + Sbjct: 230 GNL--EFEKALLKNRERDIRMKSTSVGPHRDDICFMTNDLDIR-KFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ PILLLD++ + LD+ ++N L + D+ + I TG D V + Sbjct: 287 LSEIELVKEIIKDTPILLLDDVLSELDKHRQNYLLDSIRDVQTLITCTGLDDFVNHRFSI 346 Query: 361 TAKFMRISNHQA 372 K + + + Sbjct: 347 N-KILYVKQGEV 357 >gi|259047901|ref|ZP_05738302.1| DNA replication and repair protein RecF [Granulicatella adiacens ATCC 49175] gi|259035578|gb|EEW36833.1| DNA replication and repair protein RecF [Granulicatella adiacens ATCC 49175] Length = 375 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 169/376 (44%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + FRNY S++L F +F+G+N GKTN++E+I L+ + R + ++ Sbjct: 1 MKLTNLQLQNFRNYESVQLEFTDGVHVFIGENAQGKTNLMESIYALAMTKSHRTTNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FA ++G LE + + + ++N + + + +L + Sbjct: 61 I-----GWKKDFATIKGTIEKTATKTNLELQFSKKGKIAKVNYLEQKRLSSYLGNLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + + ++++ R+++ RN L + Sbjct: 116 FAPENLTLVKGSPQNRRKFVDMELGQMSSLYLYDLVEYNRVLKQRNTYLKQLAIKKKQPD 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + ++EL KI R++ + L +L + + + K S++ + Sbjct: 176 EYLEVLSEMLSELASKIVFHRLDFMKQLEALAIPIHDQLSLGREKFSVSYQATIPLEDGL 235 Query: 241 CA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 A +KE Y + + ++ TLIGPHR DL + Y ++ +GS G+Q+ ++ Sbjct: 236 TASQMKEIYMNQFKKNQTREADQATTLIGPHRDDL-IFYLNEVPVQTYGSQGQQRSTVLS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 + LA L+ +TG P+LLLD++ + LD+D++ L + + + Q F+T T Sbjct: 295 LKLAEIELMKLSTGEYPLLLLDDVLSELDDDRQTHLIKAIENK-VQTFITTTSLDGIKQQ 353 Query: 358 LNETAKFMRISNHQAL 373 + I L Sbjct: 354 FINEPVVIPIEKGTIL 369 >gi|251777974|ref|ZP_04820894.1| DNA replication and repair protein RecF [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082289|gb|EES48179.1| DNA replication and repair protein RecF [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 361 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 168/371 (45%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + ++ +RNY +L L +F+GDN GKTN+LE+I + + + R + D+ Sbjct: 1 MYIKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDL 60 Query: 65 TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + ++ S + ++ DI I RD + + +++N + I + EL + Sbjct: 61 INWKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P +I RR+FLD + I ++ ++ + +++ RN +L F+ Sbjct: 116 MFSPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDIL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+ E I R+E I+ ++ + + KF ++F + Sbjct: 176 EVYDLQLVECADYIVKERLEYIDKINYYGKFIHNEITSGKEDIVFKYDSGVKFKENFKYV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + +KL + D T +GPHR D V + + GS G+Q+ ++ + + Sbjct: 236 ---FLEKLRNNLLKDREQGITSVGPHRDDFNVLINNIDVK-KFGSQGQQRTAVLTMKFSS 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA 362 ++I T PILLLD++ + LD +++ + ++DI Q +T T + D L++ + Sbjct: 292 LKIIKEITKEYPILLLDDVLSELDINRKRYVLSTLSDI--QTIITCTGINDLEDYLDDKS 349 Query: 363 KFMRISNHQAL 373 K + N + + Sbjct: 350 KVFNVCNGEIV 360 >gi|90960994|ref|YP_534910.1| recombination protein F [Lactobacillus salivarius UCC118] gi|122449496|sp|Q1WVP2|RECF_LACS1 RecName: Full=DNA replication and repair protein recF gi|90820188|gb|ABD98827.1| DNA replication and repair protein [Lactobacillus salivarius UCC118] gi|300213942|gb|ADJ78358.1| DNA replication and repair protein recF [Lactobacillus salivarius CECT 5713] Length = 379 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY + + F Q + +G N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MYLEKLELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +F A + G + KLE R + ++N + + + L + Sbjct: 61 V-----TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNHLEKARLSQYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D ID + + ++ ++R RN+ L E D Sbjct: 116 FAPEDLALVKGAPSVRRRFIDMEFGQIDALYLHTLTEYRAVLRQRNKYLKELQTKKATDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q++E G +I R+E + L + + L K Q Sbjct: 176 VYLEILSEQLSESGSQIIFKRLEFLQELEKYADKLHNQITQGKEHLQFQYESTLKEYQGK 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S LK+ ++ + TL+GPHR D+ DK + + +GS G+Q+ + Sbjct: 236 SVLELKQSLIEQYKTMMDKEIFQGTTLLGPHRDDVRFMLNDKNVQV-YGSQGQQRTAALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357 + LA L+ T PILLLD++ + LD ++ L + + + Q F+T V Sbjct: 295 VKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQNK-VQTFLTTPGLSDVAQQ 353 Query: 358 LNETAKFMRISNHQA 372 L K RI N + Sbjct: 354 LINKPKIFRIDNGKI 368 >gi|301300481|ref|ZP_07206680.1| DNA replication and repair protein RecF [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851928|gb|EFK79613.1| DNA replication and repair protein RecF [Lactobacillus salivarius ACS-116-V-Col5a] Length = 379 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 90/375 (24%), Positives = 157/375 (41%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY + + F Q + +G N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MYLEKLELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +F A + G + KLE R + ++N + + + L + Sbjct: 61 V-----TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNHLEKARLSQYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D ID + + ++ ++R RN+ L E D Sbjct: 116 FAPEDLALVKGAPSVRRRFIDMEFGQIDALYLHTLTEYRAVLRQRNKYLKELQTKKATDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS- 239 + + Q++E G +I R+E + L + + L K Q Sbjct: 176 VYLEILSEQLSESGSQIIFKRLEFLQELEKYADKLHNQITQGKEHLQFQYESTLKEYQGK 235 Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 LK+ ++ + TL+GPHR D+ DK + + +GS G+Q+ + Sbjct: 236 NVVELKQSLIEQYKTMMDKEIFQGTTLLGPHRDDVRFMLNDKNVQV-YGSQGQQRTAALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357 + LA L+ T PILLLD++ + LD ++ L + + + Q F+T V Sbjct: 295 VKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQNK-VQTFLTTPGLSDVAQQ 353 Query: 358 LNETAKFMRISNHQA 372 L K RI N + Sbjct: 354 LINKPKIFRIDNGKI 368 >gi|90581122|ref|ZP_01236921.1| recombination protein F [Vibrio angustum S14] gi|90437643|gb|EAS62835.1| recombination protein F [Vibrio angustum S14] Length = 360 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 92/369 (24%), Positives = 163/369 (44%), Gaps = 13/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN AS L A VG NG GKT++LEAI +L GR FR + V Sbjct: 1 MALTRLMVHDFRNIASCDLALAAGFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV + + I + + D + ++I + + +L + L + Sbjct: 61 IRHEQAELF-IHGRVVDNQTQLMLPIGINKKRDGTT-DVKIAGESNQKLAQLAQILPLQL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G RR F+D VF ++P+ +RL + RN LL S Sbjct: 119 ITPEGFDLLIGGPKYRRAFIDWGVFHVEPKFYHAWARLKRLTKQRNALLKTARSYRE-LS 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I++ R + I+A+ E Q P + L + + + Sbjct: 178 YWDQELALLAEEISVWRKDYISAVKEKAAEIFQ-VFLPEFDIQLGFYRGWEKETP----- 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T+ GPH++DL + + S G+ K+++ + LA Sbjct: 232 --YAELLQRNFERDCQLGYTVSGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNETAK 363 ++ TG I L+D+ ++ LD +R L + + + +Q+F++ D V D L+E K Sbjct: 289 LHLTEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISDDQVADMLDENGK 348 Query: 364 FMRISNHQA 372 + + + Sbjct: 349 LFHVEHGKI 357 >gi|51891142|ref|YP_073833.1| DNA repair and genetic recombination protein [Symbiobacterium thermophilum IAM 14863] gi|81692267|sp|Q67TK4|RECF_SYMTH RecName: Full=DNA replication and repair protein recF gi|51854831|dbj|BAD38989.1| DNA repair and genetic recombination protein [Symbiobacterium thermophilum IAM 14863] Length = 375 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 164/375 (43%), Gaps = 13/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FRNY SL + F + GDN GKTN+LEAI FL+ GR R + D+ Sbjct: 1 MYLSTLQLGAFRNYDSLTIHFSPGLNVLYGDNAQGKTNLLEAIHFLATGRSHRTSRDPDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 + G + A V +I+LE R R L+IN + R + L L + Sbjct: 61 VQEGREELLARAAVV-----RRTGTIELELRCGLQTRKQLKINGIAERKIARLVGSLAVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P ++ G RRRFLD + I + ++ + RL+ RN LL + D Sbjct: 116 LFSPDDLQLLKGPPSGRRRFLDLELSQISQTYLHHLMAYNRLVAQRNTLLKQPVIDEGLM 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + Q+ E G ++ + R E + LS + Y + L L G D L Sbjct: 176 AVYDEQLVETGAQLVVRRAEAVRRLSPIASRYHRMLAEDREDLELAYQSQGVGDDGAADL 235 Query: 244 K---EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + ++L R + + TL+GPHR D+ + + + S G+Q+ ++ + Sbjct: 236 ETVRRRLERELARLRSEERRRQVTLVGPHRDDVGFWVAGRDARL-YASQGQQRTAVLALK 294 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--DSL 358 LA +S G P+LLLD++++ LD +R+ L V + G Q F+T TD Sbjct: 295 LAELEFMSEEIGEPPLLLLDDVASELDPHRRHYLLSAVRE-GVQSFITCTDLEDLMVREW 353 Query: 359 NETAKFMRISNHQAL 373 + R+ + Sbjct: 354 PADHRLFRVRAGTVV 368 >gi|302872926|ref|YP_003841559.1| DNA replication and repair protein RecF [Clostridium cellulovorans 743B] gi|307687879|ref|ZP_07630325.1| recombination protein F [Clostridium cellulovorans 743B] gi|302575783|gb|ADL49795.1| DNA replication and repair protein RecF [Clostridium cellulovorans 743B] Length = 364 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 168/369 (45%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + FRNY L + + +F GDN GKTN+LEAI + S G+ R ++ Sbjct: 1 MFIENLKLRNFRNYKELNIDLYSGVNVFTGDNAQGKTNVLEAIYYCSLGKSHRTNKDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRIS 123 + ++E ++ K++ + + IN + ++ + EL + Sbjct: 61 ILWDA-----LSGQLEVTVNKTRLNKKIKIDILKEGKKAISINSIKLKKISELIGICNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SW 182 P +I RR+FLD + ++ ++ ++ + +++ RN +L ++ Sbjct: 116 MFSPEDLKIVKDSPSYRRKFLDIELCKLNSKYYFNLVQYNKVLNERNVVLKSNNGNNLDI 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+A+ G I RV+ IN L+ E + K+S + D K + Sbjct: 176 IEVYDMQLAKFGSHIVKDRVDYINKLNRYGQEIHKDITVSKEKISFSYITDAK---NLNG 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++ E L R+ D + + T +GPHR D ++ D T ++GS G+Q+ ++ I A Sbjct: 233 IEVELINLLKKNRQRDFIKKSTTVGPHRDDFSIEINDID-TRSYGSQGQQRTSILTIKFA 291 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNET 361 ++I G PILLLD++ + LD +++ + + D Q +T T + ++ LN+ Sbjct: 292 SLKIIKELIGEYPILLLDDVLSELDTNRQKYILNSIKD--VQTVITCTGMNEINNYLNDD 349 Query: 362 AKFMRISNH 370 K ++ Sbjct: 350 YKLFIVNEG 358 >gi|299133397|ref|ZP_07026592.1| DNA replication and repair protein RecF [Afipia sp. 1NLS2] gi|298593534|gb|EFI53734.1| DNA replication and repair protein RecF [Afipia sp. 1NLS2] Length = 383 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 138/371 (37%), Positives = 208/371 (56%), Gaps = 4/371 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L++++FR+Y + + + VG NG GKTN LEAIS L+PGRG RRA + D+ Sbjct: 9 RILRLSLTQFRSYRAASVTTRGDLVVLVGPNGAGKTNCLEAISLLAPGRGLRRARFEDIA 68 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ A VEG GLA + ++ D + R ++I+ + +HLR+ Sbjct: 69 NRAGDGSWAVSAEVEGAGGLATLGTGIDAPTGEDGSAKRRIRIDREAVSSASAFGEHLRM 128 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL PSMD +F+G + ERRR DR+V AID H R+ ER +R RNRLL + FD+ W Sbjct: 129 VWLTPSMDGLFTGPASERRRLFDRLVLAIDKDHSSRVSALERSLRSRNRLLEDRNFDAHW 188 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 C +IE + AEL V + R + LS+++ FP +++L G+++ + Sbjct: 189 CEAIERETAELAVAVAAQRGHTLQRLSAMLAARGATSAFPSARITLDGWMENALMSEPAT 248 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y L R +D+ + RTL GPH +DL V Y K + STGEQK +L+G+ L Sbjct: 249 AVEDHYRDILRKSRLLDAAAGRTLNGPHLTDLHVIYAPKEMPAKEASTGEQKALLIGLIL 308 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA L++ TG P+LLLDE+ AHLD +R ALF + +G+Q++MTG D + F Sbjct: 309 AHASLVAEMTGIVPLLLLDEVVAHLDPRRRAALFDELATLGAQVWMTGADPAAFTEAGTR 368 Query: 362 AKFMRISNHQA 372 A + + Sbjct: 369 ADRFEVEDGAI 379 >gi|323341104|ref|ZP_08081352.1| recombination protein F [Lactobacillus ruminis ATCC 25644] gi|323091525|gb|EFZ34149.1| recombination protein F [Lactobacillus ruminis ATCC 25644] Length = 386 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 156/376 (41%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + FRNY +L F + +G+N GKTN+LE+I L+ + R + ++ Sbjct: 1 MRLSNLKLKNFRNYHETKLEFSPNINVLIGENAQGKTNLLESIYVLAMTKSHRTTNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F +EG+ +++L + + ++N + + + L + Sbjct: 61 IEFSEKSAF-----LEGIVEKKTGNLRLSLSLSKKGKTARVNSLETPRLSQYIGKLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D ID + + + ++R RN L + D Sbjct: 116 FSPEDLSLVKGSPAVRRRFIDMEFGQIDAVYLYELTRYRTILRDRNVYLKQLQTKQSTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q+A+ G KI + R+E + L + L+ D Sbjct: 176 VYLEVLTEQLAKSGAKIILKRLEFLEELENYAKILHADITQQKENLTFKYKCTASIDDLE 235 Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + A++ + + TLIGPHR D+ K + +GS G+Q+ + Sbjct: 236 MNQDAIEIRLKETFETIVDKEIFQGTTLIGPHRDDVSFKVNGKNV-QTYGSQGQQRTTAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA L+ TG P+LLLD++ + LD +++ L + + D Q F+T + Sbjct: 295 AVKLAEIDLMRAKTGEYPVLLLDDVLSELDGERQTHLLKAIQDK-VQTFLTTPGLNDIAR 353 Query: 357 SLNETAKFMRISNHQA 372 L + + RI+ + Sbjct: 354 QLIKQPRLFRINAGKI 369 >gi|187932670|ref|YP_001884269.1| recombination protein F [Clostridium botulinum B str. Eklund 17B] gi|226737779|sp|B2THB7|RECF_CLOBB RecName: Full=DNA replication and repair protein recF gi|187720823|gb|ACD22044.1| DNA replication and repair protein RecF [Clostridium botulinum B str. Eklund 17B] Length = 361 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 166/371 (44%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + ++ +RNY +L L +F+GDN GKTN+LE+I + + + R + D+ Sbjct: 1 MYIKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDL 60 Query: 65 TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + ++ S + ++ DI I RD + + +++N + I + EL + Sbjct: 61 INWKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P +I RR+FLD + I ++ ++ + +++ RN +L F+ Sbjct: 116 MFSPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDIL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+ E I R+E I+ ++ + + KF F Sbjct: 176 EVYDLQLVECADYIVKERLEYIDKINYYGKFIHNEITSGKEDIVFKYDSGIKFKDDF--- 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K + +KL + D T IGPHR D V + + GS G+Q+ ++ + + Sbjct: 233 KYAFLEKLKNNLLRDREQGITSIGPHRDDFNVLINNIDVK-KFGSQGQQRTAVLTMKFSS 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA 362 ++I T PILLLD++ + LD +++ + + DI Q +T T + D L++ + Sbjct: 292 LKIIKEITKEYPILLLDDVLSELDINRKRYVLSTLNDI--QTIITCTGINDLEDYLDDKS 349 Query: 363 KFMRISNHQAL 373 K ++ N + + Sbjct: 350 KVFKVCNGEIV 360 >gi|300853236|ref|YP_003778220.1| putative DNA replication and repair protein RecF [Clostridium ljungdahlii DSM 13528] gi|300433351|gb|ADK13118.1| predicted DNA replication and repair protein RecF [Clostridium ljungdahlii DSM 13528] Length = 366 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 157/369 (42%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK+L + FRNY L + FD +F+GDN GKTNILE+I + S G+ R ++ Sbjct: 1 MYIKYLKLINFRNYKELEMEFDKNLNVFIGDNAQGKTNILESIYYCSIGKSPRTNKDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + L D I+++ + + + IN + + + EL + Sbjct: 61 INWNGKYAYIKAGVYSSSHNLNDKKIEIKIFKEGK-KGININSIRVNKLSELMGIFNVVM 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183 P +I RR+FLD + R+ ++ + +++ RN LL +S Sbjct: 120 FSPEDLKIIKESPSFRRKFLDIELCKFSKRYYYNLVQYNKVLSERNLLLRKRNNSNSDIL 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++ G I R + IN LS + + K+ + Sbjct: 180 DIYDIQLSKYGAVIIDLRNKYINKLSKMGKIIHEDITSQTEKIEFKYVTSIT---DLDNI 236 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + K L R+ D TL GPHR D + + GS G+Q+ ++ + A Sbjct: 237 ENSLFKVLETNRQRDIEKGITLYGPHRDDFVTSINGINVR-NFGSQGQQRTSVLTMKFAS 295 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362 +I TG P+LLLD++ + LD +++ + + +I Q F+TGT + ++ + Sbjct: 296 LEIIKEITGEYPVLLLDDVLSELDANRQKYILNSIDEI--QTFITGTGIGDIKKNVKKEN 353 Query: 363 KFMRISNHQ 371 + + + + Sbjct: 354 QIFIVKSGK 362 >gi|90420504|ref|ZP_01228411.1| DNA replication and repair protein recF [Aurantimonas manganoxydans SI85-9A1] gi|90335232|gb|EAS48985.1| DNA replication and repair protein recF [Aurantimonas manganoxydans SI85-9A1] Length = 407 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 163/373 (43%), Positives = 226/373 (60%), Gaps = 2/373 (0%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +++ L +++FRNY +L L F +FVGDNG GKTN+LEAIS L+PGRG RRA Y Sbjct: 18 PPAVRLDELRLADFRNYETLSLRFTRGFVVFVGDNGAGKTNLLEAISLLTPGRGLRRAPY 77 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHL 120 DV R G FS A + I+ K+ + R ++I++ + DEL L Sbjct: 78 QDVARKGGSGGFSVRANAASLGVETIIATKMMPDPAGAAARSVRIDETAAKSADELLDLL 137 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 RI WL P+MD +F+G + +RRRFLDRMV A+DP H RR D+ER +R RNRLL + D Sbjct: 138 RILWLTPAMDGLFTGPAGDRRRFLDRMVLAVDPTHGRRAADYERAVRSRNRLLADNRLDD 197 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQS 239 SW S IEAQMAELG+ + +AR E++ L+ +I FP L LT DG + Sbjct: 198 SWLSGIEAQMAELGIAMALARSELVGMLAGMIARTGAGSPFPSAGLELTSGYDGLDLARP 257 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +++E +L R D + RTL G HR++L V + KA+ A STGEQK +L+G+ Sbjct: 258 SADVEDEARMRLRSARYGDRAAGRTLEGAHRAELSVTHLAKAMPAALSSTGEQKALLIGL 317 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAHARL++ + P+LLLDEI+AHLD +R ALF ++ ++G Q FMTGTD S+F +L Sbjct: 318 VLAHARLVAAMSSLPPLLLLDEIAAHLDPGRRAALFDLIAELGVQAFMTGTDASLFAALG 377 Query: 360 ETAKFMRISNHQA 372 + A+ M +S Sbjct: 378 DRAQIMEVSGGTV 390 >gi|160878166|ref|YP_001557134.1| DNA replication and repair protein RecF [Clostridium phytofermentans ISDg] gi|189039622|sp|A9KPP4|RECF_CLOPH RecName: Full=DNA replication and repair protein recF gi|160426832|gb|ABX40395.1| DNA replication and repair protein RecF [Clostridium phytofermentans ISDg] Length = 360 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 165/372 (44%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L +S FRNY +L L F I GDN GKTNILEA+ + + + + ++ Sbjct: 1 MIVKSLELSNFRNYENLSLEFSPSTNILYGDNAQGKTNILEAVFLCATTKSHKGSKDREI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 ++ S A + D+ +L+ + + + I+ + I+ EL + + Sbjct: 61 IKLQSEE-----AHIRMRINRDDVDHRLDMHLKKNKPKGVAIDGIPIKRSSELFGIINVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P I ERRRF+D + + + +I++ +++ RN LL + F+ S Sbjct: 116 FFSPEDLSIIKNGPSERRRFIDMELCQLSKLYLHNLINYNKVLNQRNNLLKQIGFNKSLL 175 Query: 184 S---SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G + R + +++ LI+ +K + +L + Sbjct: 176 DTLYVWDQQLIHFGSALIKERDAFMKSMNELIIALHKKLSDGKEELEIVY--------EA 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + E+ KL + D + T +GPHR DL + + +GS G+Q+ + + Sbjct: 228 SVAESEFENKLKKSMERDIALKVTNVGPHRDDLSFLINGQDVR-KYGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ T PILLLD++ + LD ++N L + I + + TG ++ V + + E Sbjct: 287 LAEIELVKQVTKDKPILLLDDVLSELDRKRQNQLLDSIVGIQTIVTCTGLEEFVNNRI-E 345 Query: 361 TAKFMRISNHQA 372 T + ++ Sbjct: 346 TDRIYKVIQGTV 357 >gi|160941458|ref|ZP_02088793.1| hypothetical protein CLOBOL_06349 [Clostridium bolteae ATCC BAA-613] gi|158435604|gb|EDP13371.1| hypothetical protein CLOBOL_06349 [Clostridium bolteae ATCC BAA-613] Length = 361 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 155/373 (41%), Gaps = 19/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY L + F+ I GDN GKTNILEA+ + + A D+ Sbjct: 1 MIIESIELKNYRNYKELHMEFNQGTNILYGDNAQGKTNILEAVYVCCTSKSHKSAKDRDI 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R S R + D+ +K + + IN V IR EL + Sbjct: 61 IRFNQDESHIKLQIRKNNVPYRIDMHLK-----KNKPKGIAINGVPIRKASELFGIANVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + ++ + ++ + +++ RN+LL E +F + Sbjct: 116 FFSPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLLQRNKLLKELFFRPEYE 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G ++ R E I L+ +I +S++ Sbjct: 176 ETLDVWDMQLVNYGREVIKFRREFIKQLNEIIHAIHLSLTGGREDISISY--------EP 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +++ L R D + TL GPHR D+ I GS G+Q+ + + Sbjct: 228 FTREDQMEDILKKNRAQDMKQKTTLSGPHRDDISFIVNGIDIR-RFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ +L+ + PILLLD++ + LD ++N L + I + I TG D V + + Sbjct: 287 LSELQLVKQLSHDDPILLLDDVLSELDSSRQNHLLSAIKHIQTMITCTGLDDFVNNRF-Q 345 Query: 361 TAKFMRISNHQAL 373 K ++ + + Sbjct: 346 IDKVFKVIDGTVI 358 >gi|227891672|ref|ZP_04009477.1| recombination protein F [Lactobacillus salivarius ATCC 11741] gi|227866475|gb|EEJ73896.1| recombination protein F [Lactobacillus salivarius ATCC 11741] Length = 379 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY + + F Q + +G N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MYLEKLELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +F A + G + KLE R + ++N + + + L + Sbjct: 61 V-----TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNYLEKARLSQYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D ID + + ++ ++R RN+ L E D Sbjct: 116 FAPEDLALVKGAPSVRRRFIDMEFGQIDALYLHALTEYRAVLRQRNKYLKELQTKKATDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 + + Q++E G +I R+E + L + + L K Q Sbjct: 176 VYLEILSEQLSESGSQIIFKRLEFLQELEKYADKLHNQITQGKEHLQFQYESTLKEYQGK 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S LK+ ++ + TL+GPHR D+ DK + + +GS G+Q+ + Sbjct: 236 SVLELKQSLVEQYKTMMDKEIFQGTTLLGPHRDDVRFMLNDKNVQV-YGSQGQQRTAALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357 + LA L+ T PILLLD++ + LD ++ L + + + Q F+T V Sbjct: 295 VKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQNK-VQTFLTTPGLSDVAQQ 353 Query: 358 LNETAKFMRISNHQA 372 L K RI N + Sbjct: 354 LINKPKIFRIDNGKI 368 >gi|188590699|ref|YP_001919469.1| recombination protein F [Clostridium botulinum E3 str. Alaska E43] gi|226737778|sp|B2UX46|RECF_CLOBA RecName: Full=DNA replication and repair protein recF gi|188500980|gb|ACD54116.1| DNA replication and repair protein RecF [Clostridium botulinum E3 str. Alaska E43] Length = 361 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 167/371 (45%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + ++ +RNY +L L +F+GDN GKTN+LE+I + + + R + D+ Sbjct: 1 MYIKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDL 60 Query: 65 TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + ++ S + ++ DI I RD + + +++N + I + EL + Sbjct: 61 INWKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P +I RR+FLD + I ++ ++ + +++ RN +L F+ Sbjct: 116 MFSPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDIL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+ E I R+E I+ ++ + + KF +F Sbjct: 176 EVYDLQLVECADYIVKERLEYIDKINYYGKFIHNEITSGKEDIVFKYDSGIKFKDNF--- 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K + +KL + D T +GPHR D V + + GS G+Q+ ++ + + Sbjct: 233 KYAFLEKLRNNLLRDREQGITSVGPHRDDFNVLINNIDVK-KFGSQGQQRTAVLTMKFSS 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA 362 ++I T PILLLD++ + LD +++ + ++DI Q +T T + D L++ + Sbjct: 292 LKIIKEITKEYPILLLDDVLSELDINRKRYVLSTLSDI--QTIITCTGINDLEDYLDDKS 349 Query: 363 KFMRISNHQAL 373 K + N + + Sbjct: 350 KVFNVCNGEIV 360 >gi|227543722|ref|ZP_03973771.1| recombination protein F [Lactobacillus reuteri CF48-3A] gi|300908787|ref|ZP_07126250.1| recombination protein F [Lactobacillus reuteri SD2112] gi|77745333|gb|ABB02567.1| recombinational DNA repair ATPase [Lactobacillus reuteri] gi|227186290|gb|EEI66361.1| recombination protein F [Lactobacillus reuteri CF48-3A] gi|300894194|gb|EFK87552.1| recombination protein F [Lactobacillus reuteri SD2112] Length = 374 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 150/373 (40%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRNY L + F+ + +G N GKTN+LEAI LS + R ++ ++ Sbjct: 1 MILTELHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S A + G + I LE + + ++N + + + L Sbjct: 61 INWQEKS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR F+DR + ++ + L+R +N+ L + D Sbjct: 116 FAPEDLSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYKQQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238 + Q+A G ++ IAR + L + Q+ + L L L + Sbjct: 176 VLLGVLSDQLAAFGAEVIIARQYFLKHLEGWAADLHQEISLNKESLQLEYVNQLKVNDET 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + K D + + T+ GPHR D+ DK + A GS G+Q+ + Sbjct: 236 TAEEAYQALFKLYQDNEQREIEQGTTIYGPHRDDIRFLVNDKNV-QAFGSQGQQRTTALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG P+LLLD++ + LD ++ L + + Q F+T T S Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQNK-VQTFLTTTSLSDVARQ 353 Query: 358 LNETAKFMRISNH 370 L I + Sbjct: 354 LINEPTIFEIEHG 366 >gi|188584646|ref|YP_001916191.1| DNA replication and repair protein RecF [Natranaerobius thermophilus JW/NM-WN-LF] gi|226737815|sp|B2A2Y9|RECF_NATTJ RecName: Full=DNA replication and repair protein recF gi|179349333|gb|ACB83603.1| DNA replication and repair protein RecF [Natranaerobius thermophilus JW/NM-WN-LF] Length = 386 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 176/384 (45%), Gaps = 17/384 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + FRNY++L+L F +F G N GKTN+LEAI +L+ G+ R ++ Sbjct: 1 MKLTELCLKNFRNYSNLKLNFKKPIILFFGANAQGKTNLLEAIYYLATGKSHRAQKEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + F+ +E + + I ++ + + L++N++ K + + Sbjct: 61 IRWETSGFY-LKGELEKEQAQYTLEIITNYQNGK-NKNLKVNNLSQTNTRNFLKTMNVVI 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P + G RRRF+D+ + +DP + + ++ + +R RN+LL ++ Sbjct: 119 FSPEDLMLVKGTPDNRRRFIDQEITQVDPSYDFYLKNYFKALRQRNKLLKTYQDKNTLAQ 178 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238 Q+ G KI + R E+I+ + L +K L L +F+ Sbjct: 179 HLPPWNQQLVHYGSKIILKREEVIHKIRLLARLIYRKITNQTENLELDYSPSLEFEDCKF 238 Query: 239 ----SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 S L ++ L + + D R T IGPHR DLI +K GS G+Q+ Sbjct: 239 REQLSGEKLAHKFLNTLNENLQSDIEKRTTSIGPHRDDLIFKINNKD-ARQFGSQGQQRT 297 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 ++ + +A +I G PILLLD++ + LD++++ L +T+ Q F+T T Sbjct: 298 TVLALKMAELEMIKGEKGEFPILLLDDVLSELDDNRKKHLLN-LTEGRVQTFVTSTSMED 356 Query: 355 FD---SLNETAKFMRISNHQALCI 375 F+ + ++ RI N +A+ + Sbjct: 357 FNGDVDIKAKSQVFRIDNGEAVKL 380 >gi|58336358|ref|YP_192943.1| recombination protein F [Lactobacillus acidophilus NCFM] gi|227902591|ref|ZP_04020396.1| recombination protein F [Lactobacillus acidophilus ATCC 4796] gi|75507682|sp|Q5FN12|RECF_LACAC RecName: Full=DNA replication and repair protein recF gi|58253675|gb|AAV41912.1| DNA repair and genetic recombination protein [Lactobacillus acidophilus NCFM] gi|227869680|gb|EEJ77101.1| recombination protein F [Lactobacillus acidophilus ATCC 4796] Length = 375 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 154/376 (40%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FRN L + FD IF+G N GKTN+LEAI FL+ R R +S D+ Sbjct: 1 MYLDHLTVQNFRNLKKLDVDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTSSDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + + G + +++ L + + + IN + + + L Sbjct: 61 I-----GFDGEYTNLAGHVQKSQVTLNLRVLITKKGKKVWINRIEQAKLSKYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D+ I+ + + +++ +N L + D Sbjct: 116 FSPEDLELIKGAPSLRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL---DGKFD 237 + + Q+A + ++ R + + LS + + KLS+ D D Sbjct: 176 VFLDVLSDQLAGIAAELIYRRFKFLTYLSHYASDAYTHISLGSEKLSIAYHPSVSDITAD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + + ++ + + T GPHR D+ K + + S G+Q+ + + Sbjct: 236 DTTEEIYQKILNSFNRNKASEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SIKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + + I + Sbjct: 354 DIIKKPRVYHIQSGTI 369 >gi|167770841|ref|ZP_02442894.1| hypothetical protein ANACOL_02194 [Anaerotruncus colihominis DSM 17241] gi|167666881|gb|EDS11011.1| hypothetical protein ANACOL_02194 [Anaerotruncus colihominis DSM 17241] Length = 379 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 166/374 (44%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + I++FRN ASL L + GDNG GKTN +EA+ + + FR A A + Sbjct: 1 MRIDRIRITDFRNIASLELALCPGANVIYGDNGQGKTNFIEAVWMCTGAKSFRGAKDAQL 60 Query: 65 TRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+P G E A ++I+ R +N+V ++ EL Sbjct: 61 VRFGAPQAAVEAGFYAAGREQKALLTIE-------KRRAAALNEVPLKSAAELAGQFCAV 113 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 P+ + E+RRF+D + I P++ + + R++ RNRLL + +++S Sbjct: 114 VFSPAHLTLVKNGPQEKRRFIDTSICQIKPKYIHVLNQYTRVLDQRNRLLKDIMYETSLF 173 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 +A++A G + R + L+ E K D Sbjct: 174 DTLDIWDARLAAYGAVVIKTRATFLERLAPCAQEIYGGLAGGREKFGARYAPSLAVDPGA 233 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S +++ + L R D +R T GPHR D+ + D A GS G+Q+ ++ Sbjct: 234 SMSEIEQRALEDLRVHRGEDIRTRMTGAGPHRDDIDLTL-DGQSARAFGSQGQQRSCVLA 292 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA LI T G P++LLD++ + LD +R+ L + G QI MT D S F L Sbjct: 293 LKLAECELIRETRGEYPVVLLDDVMSELDAARRDYLLNHLQ--GRQIIMTSCDGSDFKGL 350 Query: 359 NETAKFMRISNHQA 372 + + +RI + +A Sbjct: 351 S-SGVSVRIEDGRA 363 >gi|167766861|ref|ZP_02438914.1| hypothetical protein CLOSS21_01378 [Clostridium sp. SS2/1] gi|167711409|gb|EDS21988.1| hypothetical protein CLOSS21_01378 [Clostridium sp. SS2/1] gi|291558401|emb|CBL37201.1| DNA replication and repair protein RecF [butyrate-producing bacterium SSC/2] Length = 361 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 162/373 (43%), Gaps = 19/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L + F + + GDN GKTNILE+I + + R ++ Sbjct: 1 MIIKSLELKNYRNYDELSMNFASGTNLLYGDNAQGKTNILESIYLSATTKSHRGNKDREL 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + +G++ D+ +K + + I+ + IR +L + + Sbjct: 61 IKFEENEAHIRIHFEKQGIDHQLDMHLK-----KNKAKGVAIDRIPIRRSSDLLGQIPVI 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 P +I ERR+FLD + ++ + ++ ++ +++ RN LL + F ++ Sbjct: 116 LFSPEDLKIVKSGPSERRKFLDIELSQMERLYLYQLTNYNKILVQRNNLLKQIRFQNNLI 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+ + G ++ R + I L + + K K+ L D +D Sbjct: 176 ETLEAWDIQLVKYGSEVIKYREKFIKHLGEVCQKIHNKLTGGKEKILLEYDRDVGYD--- 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 Y +L R+ D T +GPHR D+ I +GS G+Q+ + + Sbjct: 233 -----SYLTELAKKRQKDLKYSTTTVGPHRDDISFIVNGIDIR-KYGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA +L+ +PILLLD++ + LD +++ L + D + I TG D+ + L Sbjct: 287 LAQIQLMREVMKESPILLLDDVLSELDSNRKTYLLESIKDTQTIITCTGLDEFISKHLP- 345 Query: 361 TAKFMRISNHQAL 373 + +I + + Sbjct: 346 IQRMFQIKAGKIV 358 >gi|227893835|ref|ZP_04011640.1| recombination protein F [Lactobacillus ultunensis DSM 16047] gi|227864324|gb|EEJ71745.1| recombination protein F [Lactobacillus ultunensis DSM 16047] Length = 375 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 153/376 (40%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + FRN L + FD IF+G N GKTN+LEAI FL+ R R S ++ Sbjct: 1 MYLDRFTVQNFRNLKKLDVKFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + G + + + L + + + IN V + + L Sbjct: 61 IGFGGE-----YTNLLGHVQKSQVDLTLRVLITKKGKKVWINRVEQSKLSKYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D+ I+P + + +++ +N L + D Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINPEYLYFASKYRQVLIQKNNYLKQLSKGKAKDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL---DGKFD 237 + + Q+A + ++ R + + LS + + +L++ D K D Sbjct: 176 VFLDVLSDQLAGIAAEVISRRFKFLRYLSHYASDAYAHISLGSEQLAIAYHPSVSDIKAD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S + + + + T GPHR D+ K + + S G+Q+ + + Sbjct: 236 DSTEDIYHKILASFERNKDTEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + + I + + Sbjct: 354 EIIKKPRVYHIQSGKI 369 >gi|125974859|ref|YP_001038769.1| DNA replication and repair protein RecF [Clostridium thermocellum ATCC 27405] gi|256003885|ref|ZP_05428872.1| DNA replication and repair protein RecF [Clostridium thermocellum DSM 2360] gi|281418686|ref|ZP_06249705.1| DNA replication and repair protein RecF [Clostridium thermocellum JW20] gi|166220707|sp|A3DHZ7|RECF_CLOTH RecName: Full=DNA replication and repair protein recF gi|125715084|gb|ABN53576.1| DNA replication and repair protein RecF [Clostridium thermocellum ATCC 27405] gi|255992223|gb|EEU02318.1| DNA replication and repair protein RecF [Clostridium thermocellum DSM 2360] gi|281407770|gb|EFB38029.1| DNA replication and repair protein RecF [Clostridium thermocellum JW20] gi|316939070|gb|ADU73104.1| DNA replication and repair protein RecF [Clostridium thermocellum DSM 1313] Length = 369 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 96/373 (25%), Positives = 168/373 (45%), Gaps = 13/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + FRNY + F I G N GKTNI+EA+ + GR R + ++ Sbjct: 1 MYIDRILLKNFRNYKDETIKFSKNLNIIYGQNAQGKTNIIEAVFLCASGRSHRTSKDTEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 I + FS +E EG I I E + ++IN++ ++ + L +L Sbjct: 61 VNIDG-TGFSVLLDLESSEGRKKIEIDYECG---KKKVVKINEIPLKKIGNLMGNLLAVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I ERRRF+D + + P + + + +++ RN LL E + + Sbjct: 117 FSPEDILIIKEGPSERRRFIDITLCQLKPSYFYDLQQYNKVLSQRNMLLKEIQYKRNLLD 176 Query: 185 ---SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI--KLSLTGFLDGKFDQS 239 + +MAEL +I R E I L + + K ++ + +D + Sbjct: 177 TLEVWDYKMAELSSRIMTTRSEFIKRLCEISKKIHLKLTDGSEIMEIKYSPSVDLHDLSN 236 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +K E+ ++L R ++ TLIGPHR D ++ + + GS G+Q+ L+ + Sbjct: 237 PSEIKNEFIRQLNSIRDIELKRCVTLIGPHRDDYEMELNGLNLKM-FGSQGQQRTSLLSL 295 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA +I + T P+LLLD++ + LD +R L + Q F+T TDK +F++ N Sbjct: 296 KLAEIEIIKSETDEDPVLLLDDVMSELDFKRREFLLENIR--NVQTFITCTDKELFENRN 353 Query: 360 -ETAKFMRISNHQ 371 ++R+ + Sbjct: 354 FGDNLYIRVEAGR 366 >gi|225028835|ref|ZP_03718027.1| hypothetical protein EUBHAL_03122 [Eubacterium hallii DSM 3353] gi|224953831|gb|EEG35040.1| hypothetical protein EUBHAL_03122 [Eubacterium hallii DSM 3353] Length = 366 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ +RN+ SL++ F IF GDN GKTN+LE+I R R + D+ Sbjct: 1 MFVESIELNNYRNFDSLKVEFSPGVNIFFGDNAQGKTNLLESIYVSGTLRSHRGSRDKDL 60 Query: 65 TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G F R + + D+ +K + + +N V +R EL + I Sbjct: 61 IRFGEDEAHIRLFFRKDSLSHRLDVHLK-----KNKSKGVAVNGVPVRRSGELLGMMHIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I RRRFLD + ID + ++++ + +++ RN LL + + Sbjct: 116 FFSPEDLSIIKEGPAGRRRFLDMELSQIDKGYMQQLVAYSKILNERNNLLKQINLYPALI 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G + R E + L ++ + + ++ + + + Sbjct: 176 DTLDGWDEQLLAAGQFLIKKREEFVYFLDEMMAKIHGQLTGGKEQIKVEYEKNVE----- 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E++ ++L+ R D S T +GPHR DL I GS G+Q+ + + Sbjct: 231 ---AEKFREQLYSKRNKDISSGTTSVGPHRDDLRFKVGGIDIR-KFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ RLI TG PILLLD++ + LD +++ L + DI + I TG D V ++ Sbjct: 287 LSEIRLIEQVTGEKPILLLDDVLSELDAGRQSWLLESIQDIQTLISCTGLDDFVNSRISL 346 Query: 361 TAKFMRISNH 370 K R+ Sbjct: 347 D-KVFRVKEG 355 >gi|161936342|ref|YP_128267.2| recombination protein F [Photobacterium profundum SS9] Length = 359 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 164/369 (44%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN + L + VG NG GKT++LEAI +L GR FR + V Sbjct: 1 MALTRLIVKDFRNIEACDLALSPRFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV ++ + + + D + ++++ + + +L + L + Sbjct: 61 IRHEQQELF-IHGRV-LTNNQLELPLGINKKRDGTT-EVKVSGESGQKLSQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G RR F+D VF I+P+ +RL + RN LL S Sbjct: 118 ITPEGFELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIKRLTKQRNALLKTARSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I++ R E + A+ E Q P ++ L+ + + + Sbjct: 177 YWDQELAVLAEEISVWRDEYLIAVKQKAAEICQ-GFLPEYEIQLSYYRGWEKETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T+ GPH++DL + + S G+ K+++ + LA Sbjct: 231 --YAELLKRNFERDCQLGYTVNGPHKADLRMKVSGTPVEDVL-SRGQLKLMVCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNETAK 363 ++ TG I L+D+ ++ LD +R L + + + +Q+F++ ++ + D +E K Sbjct: 288 LHLTEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISNEQIADMHDENGK 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 MFHVEHGKI 356 >gi|146337178|ref|YP_001202226.1| recombination protein F [Bradyrhizobium sp. ORS278] gi|146189984|emb|CAL73976.1| DNA replication and repair protein recF [Bradyrhizobium sp. ORS278] Length = 378 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 142/370 (38%), Positives = 207/370 (55%), Gaps = 3/370 (0%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L+++ FR+Y + + A VG NG GKTN LEAISF +PGRG RRA+ DV Sbjct: 5 RINRLSLTHFRSYRAAGVSVQADMVALVGANGAGKTNCLEAISFFAPGRGLRRATLEDVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ A +EG GLA +E D + R +I+ + H+R+ Sbjct: 65 DNQGDGSWAISAEIEGALGLATFGTGIEPPRGDASTTRRCRIDREPVGSAAAFGDHIRMV 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL PSMD +F G + ERRRF DR+V AID H R+ ER +R RNRLL FD WC Sbjct: 125 WLTPSMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNFDDHWC 184 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242 +IE + AEL V + +R + L++++ + FP +++L G+++ + A Sbjct: 185 DAIERETAELAVAVAASRGQTAVKLAAMLRQRGAASAFPSAEIALDGWMENALLTEPALA 244 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ Y L D R D+ + RTL GPH +DL V Y K + STGEQK +L+G+ LA Sbjct: 245 VEDRYRALLRDNRARDAAAGRTLDGPHLTDLHVIYAPKNMPARDASTGEQKALLIGLILA 304 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L++ TTG P+LLLDEI AHLD +R ALF + +G+Q+++TG D + F L E Sbjct: 305 HATLVAETTGIVPMLLLDEIVAHLDPGRRTALFAELGTLGAQVWLTGADPAAFAELRELG 364 Query: 363 KFMRISNHQA 372 + + + Sbjct: 365 EIFDVEGGRI 374 >gi|158422636|ref|YP_001523928.1| recombination protein F [Azorhizobium caulinodans ORS 571] gi|158329525|dbj|BAF87010.1| DNA replication and repair protein [Azorhizobium caulinodans ORS 571] Length = 378 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 139/374 (37%), Positives = 218/374 (58%), Gaps = 5/374 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 R +++ L +S FR+Y++ ++ + G NG GKTNILEA+S LSPGRG RRA+ Sbjct: 3 APRARVRRLTLSRFRSYSAAQIEVADGPVVLTGPNGAGKTNILEAVSLLSPGRGLRRAAL 62 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHL 120 + G ++ A VEG G D+ + +R D S R +I+ + + HL Sbjct: 63 DAFAQAGGDGSWAVAAHVEGALGPVDLGTGSDASRPDGSTRRCRIDRESVSSANAFLDHL 122 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 ++ WL P MD +F+G +RRRFLDR+V A+D H R+ ER +R RNR+L +G D+ Sbjct: 123 KVVWLTPEMDGLFTGPPADRRRFLDRLVLAVDASHGTRVNALERALRSRNRVLEDG-GDN 181 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKF-DQ 238 S++E ++AELGV + AR+E + L+ I + + + FPH ++L G L+ D Sbjct: 182 RMLSAVEHELAELGVAVAAARLETVQRLAGEIAAHADETSPFPHADIALDGALERMLTDA 241 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +++ Y L D R D + RTL GPH DL+V + K + A STGEQK +L+G Sbjct: 242 PAVEVEDRYRALLQDNRPRDRAAGRTLEGPHLCDLVVAHGPKGLPAARCSTGEQKSLLIG 301 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + L+HARL++ G AP++LLD++ A+LD ++R+ +F + +G+Q++MTG D S F +L Sbjct: 302 LALSHARLVTAMQGLAPVVLLDDVVAYLDAERRSGMFAALKALGAQVWMTGADPSAFAAL 361 Query: 359 NETAKFMRISNHQA 372 + A+ +S Sbjct: 362 DG-AERFTVSPGAV 374 >gi|291165886|gb|EFE27933.1| DNA replication and repair protein RecF [Filifactor alocis ATCC 35896] Length = 355 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 174/368 (47%), Gaps = 18/368 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L + FRNY L L+F +FVG NG GKTN+LEAIS S GR FR D+ Sbjct: 1 MKIHQLTLKNFRNYEQLELLFKEGANVFVGQNGQGKTNVLEAISLFSVGRSFRTVRDLDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + A VE + G I +KL ++V+ IN V I + +L L I Sbjct: 61 VAFGQDAA-TVSAIVENLHGRYTIDMKLGKSIKKAVK---INSVPIEKLQDLFGVLNIVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P ++ ERR FLDR + + PR+ R + ++ +++ RN LL + D Sbjct: 117 FSPDDLKLVKDGPKERRLFLDREISQLKPRYYRILSEYYKVLNQRNTLLKQE-VDEVLLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 Q+A+ G +I+ R E I + E K + L + + + + Sbjct: 176 IYTQQIAKSGFQIHKMREEFIEHIREFAQEIHSKISSKKEVLEIEYEPNV-----YAISE 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EEY + L DG++ D + + + G H+ D+ + + I GS G+++ + + L+ Sbjct: 231 EEYFRYLMDGKEHDFIRKHSTRGIHKDDVALVINEMDIR-HFGSQGQKRSAAISLKLSEI 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 ++I TG PI+LLD+I + LD ++ L VT +Q+F+T +K + K Sbjct: 290 QMIYQDTGEYPIVLLDDIFSELDYSRQRMLLDYVT--NTQVFVTTAEK-----FLDNGKI 342 Query: 365 MRISNHQA 372 + N + Sbjct: 343 YAVENGKI 350 >gi|266620981|ref|ZP_06113916.1| DNA replication and repair protein RecF [Clostridium hathewayi DSM 13479] gi|288867362|gb|EFC99660.1| DNA replication and repair protein RecF [Clostridium hathewayi DSM 13479] Length = 361 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 19/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY L + F I GDN GKTNILEAI + + R + ++ Sbjct: 1 MIIESIELKNYRNYDKLHMDFSHGTNILYGDNAQGKTNILEAIYVCATTKSHRGSKDKEI 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S R + D+ +K + + +N V I+ EL + + Sbjct: 61 IQFDRDESHIKLNVRKRDVPYRIDMHLK-----KNRAKGVAVNGVPIKKASELFGIVNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P + ERRRF+D + ++ + ++ + +++ RN+LL + F + Sbjct: 116 FFSPEDLNLIKNGPAERRRFIDLELCQLNKLYVHSLVQYNKIITQRNKLLKDIMFRPDYE 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ + G ++ R ++ L+ LI ++ + L + + D Sbjct: 176 ETLDIWDMQLVQYGREVIRCREAFVSQLNDLIGTIHRQLSGEKESLHICYEPNVTADM-- 233 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + L R D R TL GPHR DL D I GS G+Q+ + + Sbjct: 234 ------FEDTLRKSRPSDLKQRTTLTGPHRDDLSFIINDIDIR-RFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ PILLLD++ + LD ++N L + I + I TG + V + Sbjct: 287 LAEIELVKKIVNDYPILLLDDVLSELDGSRQNHLLSGINHIQTMITCTGLEDFVNNRFRI 346 Query: 361 TAKFMRISNHQALC 374 K ++ + + Sbjct: 347 D-KIFKVVSGEVYS 359 >gi|225377588|ref|ZP_03754809.1| hypothetical protein ROSEINA2194_03238 [Roseburia inulinivorans DSM 16841] gi|225210564|gb|EEG92918.1| hypothetical protein ROSEINA2194_03238 [Roseburia inulinivorans DSM 16841] Length = 363 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 163/372 (43%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + + FRNY L + FD IF GDN GKTNILEA + + + ++ Sbjct: 1 MIIKSIELQNFRNYEDLNISFDEGTNIFYGDNAQGKTNILEAAYLSGTTKSHKCSKDKEM 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S T + E D+ +K + + IN V I+ EL L + Sbjct: 61 IRFGEQESHIRTVVVKKEKEYQIDMHLKHNRS-----KGIAINKVPIKKASELFGILNMV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRFLD + +D + + + +++ RN+LL + + Sbjct: 116 FFSPEDLNIIKNGPAERRRFLDSELCQLDKIYLSDLTTYNKILNQRNKLLKDMVYRPDLK 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G KI R + ++ L+ ++ + + + L L +++ S Sbjct: 176 DTLPVWDMQLVETGRKIIRRRKQFVDELNEIVHDIHYRISGEKEDLLL------QYEPSI 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + +L ++ D T +GPHR DL+ + I GS G+Q+ + + Sbjct: 230 EDIF--FEDELSRVKERDMRQCMTSVGPHRDDLLFSIGEVDIR-KFGSQGQQRTSALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ + P+LLLD++ + LD +++N L + D + I TG D+ V + + Sbjct: 287 LSEIELVKRSIHDTPVLLLDDVLSELDSNRQNYLLNSIHDTQTLITCTGLDEFVKNRFHI 346 Query: 361 TAKFMRISNHQA 372 K ++ Sbjct: 347 N-KIFKVVQGTV 357 >gi|90413730|ref|ZP_01221718.1| recombination protein F [Photobacterium profundum 3TCK] gi|90325199|gb|EAS41696.1| recombination protein F [Photobacterium profundum 3TCK] Length = 359 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 164/369 (44%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN + L + VG NG GK ++LEAI +L GR FR + V Sbjct: 1 MALTRLIVKDFRNIEACDLALSPRFNFLVGANGSGKNSVLEAIHYLGHGRSFRSHLTSRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV + ++ + + + D + ++++ + + +L + L + Sbjct: 61 IRHEQQELF-IHGRV-LTDNQLELPLGINKKRDGTT-EVKVSGESGQKLSQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G RR F+D VF I+P+ +RL + RN LL S Sbjct: 118 ITPEGFELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIKRLTKQRNALLKTARSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I++ R E + A+ E Q P ++ L+ + + + Sbjct: 177 YWDQELAVLAEEISVWRDEYLIAVKQKAAEICQ-GFLPEYEIQLSYYRGWEKETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T+ GPH++DL + + S G+ K+++ + LA Sbjct: 231 --YAELLKRNFERDCQLGYTVNGPHKADLRMKVAGTPVEDVL-SRGQLKLMVCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNETAK 363 ++ TG I LLD+ ++ LD +R L + + + +Q+F++ D+ + D +E K Sbjct: 288 LHLTEATGKQCIYLLDDFASELDSHRRALLAQRLKETNAQVFISAISDEQITDMHDENGK 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 MFHVEHGKI 356 >gi|168335261|ref|ZP_02693362.1| DNA replication and repair protein RecF [Epulopiscium sp. 'N.t. morphotype B'] Length = 359 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 166/372 (44%), Gaps = 17/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+++ FRNY L L IF GDN GKTN+LEAI + R R S +V Sbjct: 1 MYISTLSLTNFRNYQHLSLSLSKGINIFFGDNAQGKTNVLEAIYLCATARSHRTTSEKEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S + A V M ++ + + + +N + I + +L L + + Sbjct: 61 IKWDSEN-----ALVNLMLTKQYSLSTIDFIISKRYKSVLVNKLPINKLTKLFGVLNVVF 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSW 182 P + +RRRF+D + +D + ++ + ++++ RN L + + + Sbjct: 116 FAPENLDLIKKSPKDRRRFIDIELCQLDSMYVSQLSSYHKILKQRNCYLKQNVNNINYEF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ + + KI R E I L++ + + L L + + Sbjct: 176 LDILDENLYKYAKKIFYKRSEFIENLNTKAAAIHLELSGGKEHLKLIYEPNVDINI---- 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + +L R D ++ T GPHR D+ D ++ + GS G+Q+ ++ I A Sbjct: 232 ----FKSRLKFNRDRDIRTKTTNSGPHRDDINFLMNDHSLKL-FGSQGQQRTCILSIKFA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I+ TG PILLLD+I + LD +++ LF+ + ++ + I TG D ++F + N++ Sbjct: 287 QIDIITEITGETPILLLDDILSELDINRQKYLFKYINNLQTMITCTGVDPNLF-TWNDSI 345 Query: 363 KFMRISNHQALC 374 K + +C Sbjct: 346 KVFIVEKANIIC 357 >gi|319403603|emb|CBI77188.1| DNA replication and repair protein [Bartonella rochalimae ATCC BAA-1498] Length = 370 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 166/369 (44%), Positives = 224/369 (60%), Gaps = 6/369 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RNY SL L H +F G NG GKTN+LEA+SFLSPGRG RRA+Y+D+ Sbjct: 1 MAVRQLKLENYRNYCSLVLHLLGHHVVFTGRNGAGKTNLLEALSFLSPGRGLRRAAYSDI 60 Query: 65 T-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + GS + F FAR++ + G A+I LE D R + IN V D L + I Sbjct: 61 SYSEGSGTGFVVFARLQCALYGEANIGTALEVNDG--GRKVHINGVNEAS-DCLMDYCHI 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S L PSMD +F G +++RRRFLDRMV +ID H RR+ D++R+MR RNRL +G D W Sbjct: 118 SILTPSMDGLFIGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDGNNDRVW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFC 241 ++E QMAEL I ARV++I L+ + FP L + GFL+ + S Sbjct: 178 LDALEVQMAELATAIAAARVDVIQLLNDTFAQVSSCVPFPRAFLQVDGFLEKALREMSAI 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++E++ +L + R +D ++ RTL GPHR+DL V Y DK + STGEQK +L G+ L Sbjct: 238 EVEEQFLNRLRNNRAIDCVAGRTLEGPHRTDLQVFYADKNMNATLCSTGEQKALLAGLVL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 HARL S + PI LLDEI+AH D +R ALF I+ D+G Q FMTGTD +FDSL Sbjct: 298 CHARLTSMISNMTPIFLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357 Query: 362 AKFMRISNH 370 A+F I N Sbjct: 358 AEFFEIENG 366 >gi|15893302|ref|NP_346651.1| recombination protein F [Clostridium acetobutylicum ATCC 824] gi|20978635|sp|Q97N32|RECF_CLOAB RecName: Full=DNA replication and repair protein recF gi|15022821|gb|AAK77991.1|AE007513_4 RecF, ABC family ATPase [Clostridium acetobutylicum ATCC 824] gi|325507411|gb|ADZ19047.1| recombination protein F [Clostridium acetobutylicum EA 2018] Length = 363 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 162/370 (43%), Gaps = 12/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + FRNY ++ + F+ + I G+N GKTNILE+I + S G+ R ++ Sbjct: 1 MYIKNLYLDNFRNYDNIEIDFNKKVNILTGNNAQGKTNILESIFYCSLGKSHRTNKDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F R+ D I+++ + + IN + ++ + EL + Sbjct: 61 IKWDKDEAFI---RLNLSRKPLDKKIEIKIFKGGK-KGININSIKLKKISELFGIFNVVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSWC 183 P +I RR+FLD + +D R+ +++ + +++ RN +L F ++ Sbjct: 117 FSPEDLKIVKESPGHRRKFLDMEISKLDHRYYYKLVQYNKILDQRNIMLRNKKFLNNDMI 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S + Q+++ G + +R++ +N L+ ++ T K ++ + Sbjct: 177 SVYDEQLSKFGSSLIESRIKYLNKLNEKGKIIHSDITKGKEEIEFTYLTHVKGREN---I 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 EE D K D T +GPHR D + + + GS G+Q+ ++ I A Sbjct: 234 SEELFSLFKDSYKRDVEKGNTSVGPHRDDFSIKI-NGIDARSFGSQGQQRTSVLTIKFAS 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETA 362 ++I + P+LLLD++ + LDE ++ + + G Q +T T + L Sbjct: 293 IQIIKEISSETPVLLLDDVLSELDESRQEYILNSLE--GIQTLITCTGIGDIEKYLKNDF 350 Query: 363 KFMRISNHQA 372 RI N + Sbjct: 351 NVFRIDNGRI 360 >gi|260887488|ref|ZP_05898751.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC 35185] gi|330837870|ref|YP_004412450.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC 35185] gi|260862775|gb|EEX77275.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC 35185] gi|329745634|gb|AEB98990.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC 35185] Length = 369 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 94/376 (25%), Positives = 163/376 (43%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K K L + FRNY L L +F+G+N GKTNI EA+ + + GR R + AD+ Sbjct: 1 MKAKSLRLKCFRNYEELDLSLSPNINVFLGENAQGKTNIAEALYYAAIGRSHRTNADADL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 +P+ A++ + D+ LE + R R ++ N I+ EL Sbjct: 61 IAWDAPA-----AKIGLLFERLDVENTLEFQFQRGRRRSIRKNGEPIKT-KELFGVFNAV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181 P + G ERRRFLD + P + ++ + R++ RN LL + + Sbjct: 115 LFSPEDLFLIKGAPAERRRFLDGEISQASPSYGHELMQYTRILTQRNSLLKKIRERRAGK 174 Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S + Q+A+ I R + L+ L ++ + LSL+ L G ++ Sbjct: 175 EMLSLWDEQLAKSAAHIVEKRFLAVKKLNMLANLMQRRISAGKENLSLSYELCGAEEEPP 234 Query: 241 CALKE---EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 C +E Y KKL + +D + T +GP R D+ ++ + + GS G+Q+ ++ Sbjct: 235 CVTEELVPWYNKKLEESLDLDVLRGSTSVGPQRDDIRLEVNGVNLR-SFGSQGQQRTGVL 293 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + L+ + + TG P+LLLD++ + LD +R L + Q +T TD + Sbjct: 294 ALKLSELEFLRSETGEYPVLLLDDVMSELDGTRREKLLDFIGREHIQTLLTATDAAYLPE 353 Query: 358 LNETAKFMRISNHQAL 373 + + Sbjct: 354 -KFMGNIFHVRAGKIF 368 >gi|328541627|ref|YP_004301736.1| DNA replication and repair protein recF [polymorphum gilvum SL003B-26A1] gi|326411379|gb|ADZ68442.1| DNA replication and repair protein recF [Polymorphum gilvum SL003B-26A1] Length = 377 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 155/376 (41%), Positives = 225/376 (59%), Gaps = 7/376 (1%) Query: 1 MTNRI--KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 M++R+ I+ L +++FRNY+ L L A VGDNG GKTNILEAIS L+ GRG RR Sbjct: 1 MSSRVSVAIERLTLTDFRNYSLLVLEPSAPLVALVGDNGAGKTNILEAISLLTAGRGLRR 60 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 A+ AD+ R+ P ++ A + G + I + R ++I+ R + L Sbjct: 61 AALADIARLDGPGGWAISALLRTQAG--ETVIGTGYTPGEAGRRVRIDGTEARSSEALLD 118 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 HLR+ WLVPSMD +F+G ERRRFLDR+ ++DP H RR+ D+ER +R RNRLL EG Sbjct: 119 HLRVLWLVPSMDGLFTGPGSERRRFLDRLTLSLDPTHGRRVNDYERALRQRNRLLEEG-G 177 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFD 237 +++ SIE Q+AELG + +AR E ++ L I + FP L++ G + + Sbjct: 178 SAAYLDSIERQVAELGAAVALARGETVSLLQGCIDAQAATGLPFPRALLAVDGEFEVETQ 237 Query: 238 QSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + +E+ + L DGR D + RTL GPHRSDL+V + K I A STGEQK +L Sbjct: 238 GLGASDREDRLRRMLRDGRTRDRAAGRTLCGPHRSDLVVQHAAKGIPAAQSSTGEQKALL 297 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 VG+ LAHA L + G P+LLLDEI+AHLD +R ALF + + Q+ MTGTD +F+ Sbjct: 298 VGLILAHADLTAAVAGMTPVLLLDEIAAHLDPGRRAALFSRLEALACQVVMTGTDAGLFE 357 Query: 357 SLNETAKFMRISNHQA 372 ++ ++ + ++ ++A Sbjct: 358 AMPAGSEILAVAGNRA 373 >gi|121602459|ref|YP_989526.1| recombination protein F [Bartonella bacilliformis KC583] gi|120614636|gb|ABM45237.1| DNA replication and repair protein recF [Bartonella bacilliformis KC583] Length = 378 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 163/374 (43%), Positives = 225/374 (60%), Gaps = 6/374 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ + L ++ +RNY L + F ++H +F G NG GKTN+LEA+SFL+PGRG RRA+Y+ Sbjct: 2 HRVAVTQLKLAHYRNYHFLNVNFSSRHVVFTGHNGAGKTNLLEALSFLAPGRGLRRAAYS 61 Query: 63 DV-TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 DV G F FAR++ + G I LE S R L IN D L + Sbjct: 62 DVSCSRGEGEGFVVFARLQCALYGEVSIGTALEAGG--SNRRLHINGEN-EACDCLTDYC 118 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 IS L PSMD +F G +++RRRFLDRMV AID H RR+ D+++ MR RNRL +G D Sbjct: 119 HISALTPSMDGLFMGPTLDRRRFLDRMVLAIDSLHGRRIADYDKAMRARNRLFADGNDDR 178 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239 +W +++E QMAEL I AR++++ L+ ++ FP L + G L+ + S Sbjct: 179 AWFNALEMQMAELATAIAAARIDVVQLLNDTFVQMSASIPFPRAFLQIDGSLEEALRKMS 238 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++EE+ +L R MD + RTL GPHR+DL V Y DK + A STGEQK +L+G+ Sbjct: 239 AVDVEEEFLDRLRRNRAMDRAAGRTLEGPHRTDLQVFYADKNMAAASCSTGEQKALLIGL 298 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L HA L + API LLDE++AHLD +R ALF I+ D+G Q FMTGTD+ +FDSL Sbjct: 299 VLCHAHLTGVMSNMAPIFLLDEMAAHLDFYRRAALFDILDDLGGQTFMTGTDRILFDSLK 358 Query: 360 ETAKFMRISNHQAL 373 A+F I + L Sbjct: 359 GRAEFFEIEDGALL 372 >gi|319406519|emb|CBI80161.1| DNA replication and repair protein [Bartonella sp. 1-1C] Length = 370 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 166/369 (44%), Positives = 225/369 (60%), Gaps = 6/369 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RNY SL L H + G NGVGKTN+LEA+SFLSPGRG RRA+Y+D+ Sbjct: 1 MAVRQLKLENYRNYCSLALHLLGHHVVLTGRNGVGKTNLLEALSFLSPGRGLRRAAYSDI 60 Query: 65 -TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 G + F FAR++ + G A+I LE D R + IN V +D L + I Sbjct: 61 SCSEGGGTGFVVFARLQCTLYGEANIGTALEVNDG--GRKVHINGVN-EAIDCLMDYCHI 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S L PSMD +F+G +++RRRFLDRMV +ID H RR+ D++R+MR RNRL +G D W Sbjct: 118 SILTPSMDGLFTGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDGNDDRVW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFC 241 ++E QMAEL I ARV++I L+ + + FP L + G L+ + S Sbjct: 178 LDALEVQMAELATAIAAARVDVIQLLNDMFAQVSSCIPFPRAFLQVDGCLEKALREMSAI 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++E++ +L + R +D ++ RTL GPHR+DL V Y DK I STGEQK +L G+ L Sbjct: 238 EVEEQFLSRLRNNRAIDCVAGRTLEGPHRTDLKVFYADKNINATLCSTGEQKALLTGLVL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 HARL S + PILLLDEI+AH D +R ALF I+ D+G Q FMTGTD +FDSL Sbjct: 298 CHARLTSMISNMTPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357 Query: 362 AKFMRISNH 370 A+F I N Sbjct: 358 AEFFEIENG 366 >gi|332971207|gb|EGK10170.1| recombination protein F [Desmospora sp. 8437] Length = 372 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 158/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRN L+L + +FVG N GKTNILE++ L+ G+ R S+ ++ Sbjct: 1 MYVERLELKQFRNIEHLKLDCSGELHMFVGPNAQGKTNILESLYVLAIGKSHRTRSHREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R A V G E + I+L R R +R N V R + E L Sbjct: 61 IRWEQTGAL-LKAEVSGKESARRLEIRLTPRGKRVLR----NGVEQRRLSEYIGSLTAVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P I G RRRFLD + + P + + + +L++ RN LL E + Sbjct: 116 FAPEDLSIVKGSPQVRRRFLDMEIGQVSPAYIYHLTRYNQLLQQRNSLLKELGKGWGKQT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+ L + R +N LS E L+L + Sbjct: 176 ALLDVLNEQLVGLSTHLWSKRFSFVNILSRWAQEIHHSITQGSESLTLQYRPLAAVEPGM 235 Query: 241 --CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +++E ++L R+ + TLIGPHR DL + + GS G+Q+ + Sbjct: 236 DRSSMEEALTRELMQVREQEIQRGTTLIGPHRDDLRIA-ANGTDLHTFGSQGQQRTAALS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA LI TG PILLLD++ + LD+ ++ L + Q F+T T D Sbjct: 295 LKLAEIELIHQETGTYPILLLDDVLSELDDGRKTHLLEAIRG-RVQTFVTTTGLEGIDRE 353 Query: 358 LNETAKFMRISNHQA 372 E A+ R+ Sbjct: 354 TLERARIRRVHQGSI 368 >gi|184154480|ref|YP_001842820.1| recombination protein F [Lactobacillus fermentum IFO 3956] gi|226737808|sp|B2GEV1|RECF_LACF3 RecName: Full=DNA replication and repair protein recF gi|183225824|dbj|BAG26340.1| DNA replication and repair protein RecF [Lactobacillus fermentum IFO 3956] Length = 373 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 158/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +S +RNY L + F + +G+N GKTN+LEAI L+ + R A ++ Sbjct: 1 MILQELQLSHYRNYEELAVTFAPGINVLIGENAQGKTNLLEAIYLLAFTKSHRTAKDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ARV G+ A + LE + S + +++N + + + +L + Sbjct: 61 IGWHQK-----LARVSGVVERASGRLPLEVQISTSGKRVKVNHLFQKRLSTYVGNLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G + RR+F+D + ++ + F + + RN L + D Sbjct: 116 FAPEDLALVKGAPVNRRQFMDMEFGQMSSKYLYNVSRFNQQLAQRNAYLRQFKYGQQSDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 I Q+A +G ++ +AR +++ L E + +LSL + D Sbjct: 176 ILLGVITDQLASVGGEVVVARQQLVKRLGKWAAELHHHISKQKEELSLQYVSQVEVDDQT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + + + + + +LIGP R D+ + + GS G+Q+ + Sbjct: 236 TEEEAVAQLRRLYSENEEREIEHGTSLIGPQRDDIHFIVNGQNV-QRFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG P+LLLD++ + LD+D++ L + D Q F+T T S Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQDK-VQTFITTTSLSGVARQ 353 Query: 358 LNETAKFMRISNH 370 L I + Sbjct: 354 LIHHPTIFTIQSG 366 >gi|227514122|ref|ZP_03944171.1| recombination protein F [Lactobacillus fermentum ATCC 14931] gi|260662541|ref|ZP_05863436.1| DNA replication and repair protein RecF [Lactobacillus fermentum 28-3-CHN] gi|227087493|gb|EEI22805.1| recombination protein F [Lactobacillus fermentum ATCC 14931] gi|260553232|gb|EEX26175.1| DNA replication and repair protein RecF [Lactobacillus fermentum 28-3-CHN] gi|299782688|gb|ADJ40686.1| DNA replication and repair protein recF [Lactobacillus fermentum CECT 5716] Length = 373 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 158/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +S +RNY L + F + +G+N GKTN+LEAI L+ + R A ++ Sbjct: 1 MILQELQLSHYRNYEELAVTFAPGINVLIGENAQGKTNLLEAIYLLAFTKSHRTAKDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ARV G+ A + LE + S + +++N + + + +L + Sbjct: 61 IGWHQK-----LARVSGVVERASGRLPLEVQISTSGKRVKVNHLFQKRLSTYVGNLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G + RR+F+D + ++ + F + + RN L + D Sbjct: 116 FAPEDLALVKGAPVNRRQFMDMEFGQMSSKYLYNVSRFNQQLAQRNAYLRQFKYGQQSDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 I Q+A +G ++ +AR +++ L E + +LSL + D Sbjct: 176 ILLGVITDQLASVGGEVVVARQQLVKRLGKWAAELHHHISKQKEELSLQYVSQVEVDDQT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + + + + + +LIGP R D+ + + GS G+Q+ + Sbjct: 236 TEEEAVAQLRRLYSENEEREIEHGTSLIGPQRDDIHFIVNGQNV-QRFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG P+LLLD++ + LD+D++ L + D Q F+T T S Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQDK-VQTFITTTSLSGVARQ 353 Query: 358 LNETAKFMRISNH 370 L I + Sbjct: 354 LIHHPTIFTIQSG 366 >gi|291539809|emb|CBL12920.1| recF protein [Roseburia intestinalis XB6B4] Length = 368 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 164/373 (43%), Gaps = 19/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + ++ FRNY +L++ FD I GDN GKTNILEA + + + ++ Sbjct: 1 MIIQSIELNNFRNYENLQISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEM 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + + T G + D+ +K + + +N + ++ EL L I Sbjct: 61 IRFGTNEAHLRTMVLKNGKQYQIDMHLKHNRS-----KGIAVNKIPMKKASELFGILNIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERR FLD + +D + + ++ +++ RN+LL + + Sbjct: 116 FFSPEDLNIIKNGPSERRHFLDAELCQLDKIYLYDLSNYNKILNQRNKLLKDMVYRPELS 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+A+ G KI R + + L+ ++ E + + +L L+ D Sbjct: 176 DTLPVWDMQLADTGKKIIRRREKFVKELNEIVHEIHYRISGGREELFLSYEPSVSAD--- 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++L + D +T +GPHR DL+ I GS G+Q+ + + Sbjct: 233 -----LLEQELERVKPRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ + P+LLLD++ + LD +++N L + D + I TG D+ + + E Sbjct: 287 LSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDEFIRNRF-E 345 Query: 361 TAKFMRISNHQAL 373 K + + Q Sbjct: 346 INKVFEVISGQVF 358 >gi|254520693|ref|ZP_05132749.1| recombination protein F [Clostridium sp. 7_2_43FAA] gi|226914442|gb|EEH99643.1| recombination protein F [Clostridium sp. 7_2_43FAA] Length = 361 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 170/371 (45%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY SL + +F+GDN GKTNILEAI + + + R + ++ Sbjct: 1 MYIKRLQMLNYRNYKSLNITLGKNVNVFMGDNAQGKTNILEAIYYCAFAKSHRTSKDREL 60 Query: 65 TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 S S + S + ++ DI+I + ++IN + + + EL + + Sbjct: 61 INWNSDSAYVSLLVGKDRLDKNIDINI-----LKDGKKAIKINKIKVSKIGELFGNFNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P +I RR+F+D + ++ ++ ++ + +++ RN +L DS Sbjct: 116 MFSPEDLKIIKDSPGVRRKFIDMELCQLNSKYYYNLVQYNKVLNERNVVLKNRKLDSEIL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A G I I R++ IN L+ + + + + K + Sbjct: 176 DIYDIQLANFGYHIIIERLKYINKLNFYGNDIHKDISSGKENVEFKYISTIK---DLEDI 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + L RK D T IGPHR D IV D T + GS G+Q+ ++ I + Sbjct: 233 ENSFYELLRRNRKKDIEKGTTSIGPHRDDFIVLIND-VDTKSFGSQGQQRSAVLTIKFSS 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362 ++I T P+LLLD++ + LD +++ + + +I Q +T T + + + L+ ++ Sbjct: 292 LKIIKEMTSEYPVLLLDDVLSELDFNRKRYILSTIGEI--QTIITCTGIEDLTNYLDNSS 349 Query: 363 KFMRISNHQAL 373 + ++ + L Sbjct: 350 RVFKVKEGEIL 360 >gi|240849791|ref|YP_002971179.1| DNA replication and repair protein RecF [Bartonella grahamii as4aup] gi|240266914|gb|ACS50502.1| DNA replication and repair protein RecF [Bartonella grahamii as4aup] Length = 377 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 170/376 (45%), Positives = 226/376 (60%), Gaps = 6/376 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +++ ++ L + +RNY + F QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y Sbjct: 5 VHKVAVRQLKLLRYRNYPFFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAY 64 Query: 62 ADV-TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +DV G F FAR+E + G I LE D+ R + IN V D L + Sbjct: 65 SDVSFVDGGGGGFVVFARLECALYGEVKIGTALEVSDN--SRKVHINGVN-ESGDCLTDY 121 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 IS L PSMD +F G S+ERR FLDRMV AIDP HRRR+ D++R MR RNRL +G D Sbjct: 122 CHISVLTPSMDGLFIGPSLERRSFLDRMVLAIDPLHRRRIADYDRAMRARNRLFLDGNED 181 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238 +W ++E QMAEL I+ ARV++I L+ + + + FP L + GFL+ + Sbjct: 182 CAWFDALEKQMAELATAISAARVDVIRLLNDMFTQMPSQIPFPRAFLQIDGFLETALSEI 241 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S ++E++ +L R MD + RTL GPHR+DL V Y DK I STGEQK +L G Sbjct: 242 SAIEVEEKFCDRLRHNRAMDRAAGRTLEGPHRADLQVFYADKNIAATSCSTGEQKALLTG 301 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + L HARL + APILLLDE++AHLD +R ALF I+ D+ Q FMTGTD+ +FD L Sbjct: 302 LVLCHARLTGMMSEKAPILLLDEMAAHLDSHRRAALFDILDDLAVQTFMTGTDRLLFDDL 361 Query: 359 NETAKFMRISNHQALC 374 A+F I + L Sbjct: 362 KGRAEFFEIKDGALLS 377 >gi|303240060|ref|ZP_07326581.1| DNA replication and repair protein RecF [Acetivibrio cellulolyticus CD2] gi|302592329|gb|EFL62056.1| DNA replication and repair protein RecF [Acetivibrio cellulolyticus CD2] Length = 372 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 177/375 (47%), Gaps = 13/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRNY + F + I G+N GKTNI+EAI + GR R + ++ Sbjct: 1 MYIDSLQLRNFRNYKENVIDFSKNYNIIYGENAQGKTNIVEAIFLCASGRSHRTSKDIEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 I S S+ +++ + +I++ ++ + ++IN++ ++ + L +L Sbjct: 61 VNINSNSYDI---KLDATKNQEKTNIEISYEREKK-KVIKINEIPLKKMGNLMGNLLAVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P + + +RRRF+D + I P + + + +++ RN LL E + Sbjct: 117 FSPEDLSVINEGPSQRRRFIDITLSQIKPSYFYDLQLYNKILLQRNSLLKELQNNRGLID 176 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQS 239 + ++A++G +I AR E IN L+ +N +I+++ + ++ + Sbjct: 177 TLDIWDEKIADIGSRIIKARHEFINRLNKAAKYNHSILSDNNENIEINYSSSVETDNYED 236 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +K R ++ TL GPHR D + + + + GS G+++ V++ I Sbjct: 237 IDKIKANILMDFKRYRYIELKRNTTLKGPHRDDYEIFINNLDVK-SFGSQGQKRTVILSI 295 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L+ ++I TG P+LLLD++ + LD +R LF + I Q F+T T+K +FD + Sbjct: 296 KLSELQIIKEETGEYPVLLLDDVMSELDYKRREILFDNINHI--QTFITCTEKDIFDKKD 353 Query: 360 -ETAKFMRISNHQAL 373 + F+ + N + Sbjct: 354 FKDLLFVNVKNGNTI 368 >gi|332638149|ref|ZP_08417012.1| recombination protein F [Weissella cibaria KACC 11862] Length = 381 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 152/376 (40%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L ++ FRNY L + F +F+G N GKTN+LEAI L+ R R S ++ Sbjct: 1 MELLELKLNNFRNYQDLAVTFSPGVNVFLGPNAQGKTNLLEAIYVLALARSHRTTSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A V G+ + L + ++N + + L + Sbjct: 61 IGWDGKE-----AMVSGVVRRQYGKVPLSLAFTSKGKKARMNHLDQAKLGTYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR F+DR + P++ ++ +++ RN+ L + D Sbjct: 116 FAPEDLALVKGAPTIRRNFIDREFSQMSPKYLYIANQYKGVLKQRNQYLKQLQSKQAKDM 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238 + + Q+ ++ + R+++I L ++++ L+ + Sbjct: 176 LYLEVLTDQLTSFASELIVRRIQLIKKLGEAAAPIHADITQGGETLRIAYVSQLNEEELG 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +KE K+ + + M TL+GPHR DL D + GS G+Q+ + Sbjct: 236 DEQVIKEAMTKRFERLQSREVMMGTTLLGPHRDDLRFDVNGHDV-ATFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG PILLLD++ + LD +++ L + + Q F+T S Sbjct: 295 VKLAEIDLMKQETGEYPILLLDDVLSELDTNRQTHLLTAMQNK-VQTFITTPSLSDVARQ 353 Query: 358 LNETAKFMRISNHQAL 373 L K + Q + Sbjct: 354 LINEPKVFNVRAGQLV 369 >gi|170738370|ref|YP_001767025.1| DNA replication and repair protein RecF [Methylobacterium sp. 4-46] gi|168192644|gb|ACA14591.1| DNA replication and repair protein RecF [Methylobacterium sp. 4-46] Length = 382 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 138/372 (37%), Positives = 200/372 (53%), Gaps = 5/372 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +FRN+ASL L VG+NG GKTNILEA+S +PGRG RRA +A + Sbjct: 8 RVTRLIARDFRNHASLDLGVGRPFVALVGENGAGKTNILEALSLFAPGRGLRRADFAAMA 67 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G P F+ VEG G + E R++R R +I+ + LR+ Sbjct: 68 REGGPGGFAVSLSVEGPHGEHRVGTAWEPPQGREERGGRQCRIDGASAPSPTAFAEQLRV 127 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P +D +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E D W Sbjct: 128 VWLTPDLDALFRGPAGDRRRFLDRLVLAVDAGHGSRVSALERALRSRNRLLEERPEDGPW 187 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKFDQ-SF 240 +IE ++AEL + + +AR E + L LI+ FP + L G +D Sbjct: 188 LDAIEREVAELAIAVALARRETVERLDRLILATRDAASPFPWAGVRLEGDIDDLVAVWPA 247 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ + L R D + RTL GP SDL+V + K + STGEQK +L+G+ Sbjct: 248 VDAEDRFRATLRQNRFRDRAAGRTLAGPQASDLVVRHGPKDVPAGTASTGEQKALLIGLV 307 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL++ +G AP++LLDE++AHLD +R LF + + Q++MTG D ++F L Sbjct: 308 LAHARLVAGMSGLAPLVLLDEVAAHLDPRRRAGLFDALEALPGQVWMTGADPALFAELGS 367 Query: 361 TAKFMRISNHQA 372 + ++ Q Sbjct: 368 RGDVVAVAEGQV 379 >gi|229829521|ref|ZP_04455590.1| hypothetical protein GCWU000342_01613 [Shuttleworthia satelles DSM 14600] gi|229791952|gb|EEP28066.1| hypothetical protein GCWU000342_01613 [Shuttleworthia satelles DSM 14600] Length = 365 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 100/373 (26%), Positives = 165/373 (44%), Gaps = 19/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + +S +RNY SL + FD I GDN GKTNILE+I R R A ++ Sbjct: 1 MYIQSIELSNYRNYRSLEMEFDRGTNILFGDNAQGKTNILESIYLSGTSRSHRTARDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 R G A + D+S ++ ++ + + IN V ++ +L L I Sbjct: 61 IRFGQEE-----AHIRTNVRKNDLSYCIDIHIRQAKSKGIAINGVPVKKASDLFGLLGII 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDS 180 + P I +ERR F++ + ID + + ++ + + RN LL + Sbjct: 116 FFSPEDLNIVKNGPVERRHFINAELSQIDRIYLSDLSNYNKALNQRNSLLKGILDHPELR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G ++ R E I L ++ E +K + L L + D +F Sbjct: 176 ETLDVWDGQLVSYGKRLIARRREFIADLIPIVREIHRKLSGGIEDLLLAY--EPNIDDTF 233 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + +LF R D T +GPHR DL + I GS G+Q+ + + Sbjct: 234 ------FEDELFRARDRDMRMGTTTVGPHRDDLKLSIASVDIR-RFGSQGQQRTCALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA +++ G PILLLD++ + LD +++N L + DI + I TG D+ V + + Sbjct: 287 LAEIQMMEAKRGEKPILLLDDVLSELDSNRQNYLLESINDIQTIISCTGLDEFVKNKFSV 346 Query: 361 TAKFMRISNHQAL 373 + ISN QA Sbjct: 347 H-RVYEISNGQAF 358 >gi|332980608|ref|YP_004462049.1| DNA replication and repair protein RecF [Mahella australiensis 50-1 BON] gi|332698286|gb|AEE95227.1| DNA replication and repair protein RecF [Mahella australiensis 50-1 BON] Length = 363 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 166/371 (44%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L ++++RNY ++++ F+ +F GDNG GKTNILEAI S GR R + D+ Sbjct: 1 MYIKELTLTDYRNYNNVKINFNIGINVFWGDNGAGKTNILEAIYLTSAGRSHRTSRDKDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F +V +G D+++ + + +++N I + +L + Sbjct: 61 IRQGAQDAF-INIKVIRKDGEIDVNMMI---PQNGSKRIKVNGKYINRIAQLMGIVTAVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P ++ ERRRF+D + I P + + + +++ RN+ L + G+ Sbjct: 117 FSPEDLKLVKEGPEERRRFIDIFISQIKPDYLYNLQKYYKILENRNKTLKDIKYGHASRD 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+A +G ++ R+ ++ + + + + + L L Sbjct: 177 LLAVWNEQLAYIGTELLEQRLYFVDKICAEVSDIHEYITDHKENLKLRYKSTLSLS---G 233 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +K+ + L D T IGPHR D+I+ D + +GS G+Q+ + + L Sbjct: 234 NIKQNFISALNQRFDADINMGTTTIGPHRDDMIILVNDMDMRY-YGSQGQQRTAALSLKL 292 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 + + G +P+LLLD++ + LD ++N L + Q MT KS + + Sbjct: 293 GQLEVTEDLIGESPVLLLDDVMSELDIMRQNMLMSYMKRY--QTMMTCIRKSDYLEQYDK 350 Query: 362 AKFMRISNHQA 372 F + N Q Sbjct: 351 KTFFYVENGQV 361 >gi|302669378|ref|YP_003829338.1| DNA replication and repair protein RecF [Butyrivibrio proteoclasticus B316] gi|302393851|gb|ADL32756.1| DNA replication and repair protein RecF [Butyrivibrio proteoclasticus B316] Length = 372 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 90/384 (23%), Positives = 170/384 (44%), Gaps = 28/384 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L +++FRNY ++++ F + I GDN GKTNILEAI + + + + ++ Sbjct: 1 MIIKSLELADFRNYENVKIDFSSGTNILYGDNAQGKTNILEAIFVSATTKSHKGSKDKEI 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + T + E D+ ++ + + I+ I+ +L L + Sbjct: 61 IRFGKDEAHIRTILEKDNAEYRVDMHLR-----SSKTKGIAIDGQKIKRASDLIGMLNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181 + P I ERRRF+D + +D + + + +L+ RN++L + Y Sbjct: 116 FFSPEDLSIIKNGPSERRRFMDMELCQLDQIYLNSLSKYNKLVVERNKVLKDLYEHPENS 175 Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G I R + I L+ +I +K LS+ + D Sbjct: 176 VLLDVQDKQLCEYGSVIIKTREKFIRDLNEIIRPIHEKLTGNKEFLSVYYEPNVSAD--- 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV----------DYCDKAITIAHGSTG 290 E+ KKL R+ D+ +++T +GPH+ D +Y + +GS G Sbjct: 233 -----EFEKKLRAARQKDTYAKQTTVGPHKDDFSFVVQKKKADCDEYGEGIDIRKYGSQG 287 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + + L+ ++ P+LLLD++ + LD +++N L + DI + + TG Sbjct: 288 QQRTASLSLKLSEIEIVKRAKKENPVLLLDDVLSELDSNRQNYLLNTIGDIQTIVTCTGL 347 Query: 351 DKSVFDSLNETAKFMRISNHQALC 374 D+ V + E K ++++ Sbjct: 348 DEFVNNRF-EIDKLFKVTDGTISS 370 >gi|148251630|ref|YP_001236215.1| recombination protein F [Bradyrhizobium sp. BTAi1] gi|146403803|gb|ABQ32309.1| DNA replication and repair protein RecF [Bradyrhizobium sp. BTAi1] Length = 378 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 143/370 (38%), Positives = 208/370 (56%), Gaps = 3/370 (0%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L ++ FR+Y + + A VG NG GKTN LEAISF +PGRG RRA+ DV Sbjct: 5 RINRLALTHFRSYRAASVSVQADMVALVGANGAGKTNCLEAISFFAPGRGLRRATLEDVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 ++ A +EG GLA +E D VR +I+ + H+R+ Sbjct: 65 DNQGDGSWAISAEIEGALGLATFGTGIEPPRNDAAIVRRCRIDREPVGSAAAFGDHIRMV 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P+MD +F G + ERRRF DR+V AID H R+ ER +R RNRLL FD WC Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNFDDHWC 184 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242 +IE + AEL V + +R + L++++ + Q FP +++L G+++ + A Sbjct: 185 DAIERETAELAVAVAASRGQTAVKLAAMLRQRGQASAFPSAEIALAGWMENALLTEPALA 244 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ Y L D R D+ + RTL GPH +DL V Y K++ STGEQK +L+G+ LA Sbjct: 245 VEDRYRALLRDNRARDAAAGRTLDGPHLTDLHVIYAPKSMPARDASTGEQKALLIGLILA 304 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L++ TTG P+LLLDEI AHLD +R ALF + +G+Q+++TG D + F L E Sbjct: 305 HATLVAETTGIVPMLLLDEIVAHLDPGRRTALFAELGTLGAQVWLTGADPAAFAELRELG 364 Query: 363 KFMRISNHQA 372 + + + Sbjct: 365 EIFDVEGGRI 374 >gi|118578452|ref|YP_899702.1| recombination protein F [Pelobacter propionicus DSM 2379] gi|118501162|gb|ABK97644.1| DNA replication and repair protein RecF [Pelobacter propionicus DSM 2379] Length = 370 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 166/367 (45%), Gaps = 9/367 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I++FRN S+R + G NG GKTN+LEAI L R FR A D Sbjct: 1 MRLTRLSIADFRNIGSVRFTPGRCFNLIHGRNGQGKTNLLEAIYLLGSPRSFRNARLPDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G A + G A I ++ + + R ++++ I+ +L + + Sbjct: 61 IRHGEQR-----AHLHGEVESAGIHGRIGLSIENAGRRVELDGKGIQRASDLYGRINVVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + RRR+LDR ++ D + F+R+++ RN+LL D S Sbjct: 116 FSPDDTAMVRYGPETRRRYLDRTIYMCDIGYLHCWHAFQRILKQRNQLLKNS--DKSGLD 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+AE G +I + R + L+ ++ + + S+ +G Q ++ Sbjct: 174 TWTEQLAETGAEIIVRRRRFVERLNGMLQRHYGNISAGEETASVAYEPEGINSQEQQRVR 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EE + ++ D T GPHR DL + + + GSTG+QK ++ + +A Sbjct: 234 EELLELFQRSQQSDIRQGTTTAGPHRDDLKFRLDGRPLK-SFGSTGQQKSFVLALKMAEI 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAK 363 +++ G P+LLLD++S+ LD+ + L + ++ Q+FMT T +S V Sbjct: 293 DNLTDIFGEPPLLLLDDVSSELDDARSGNLLHFLLNMDIQVFMTTTQRSPVLLGAAAHCA 352 Query: 364 FMRISNH 370 + + Sbjct: 353 VFHVEHG 359 >gi|164686443|ref|ZP_02210471.1| hypothetical protein CLOBAR_00008 [Clostridium bartlettii DSM 16795] gi|164604454|gb|EDQ97919.1| hypothetical protein CLOBAR_00008 [Clostridium bartlettii DSM 16795] Length = 371 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 173/374 (46%), Gaps = 11/374 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + FRNY +L L F + VG NG GKTNI+EAI LS G+ FR ++ Sbjct: 1 MRLNNLQLINFRNYDNLHLNFKRNINLLVGKNGQGKTNIVEAIYMLSFGKSFRTNKDKEI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + GS + + + G +E + + +++N + I + EL +L + Sbjct: 61 IKFGSENLY-----IGGNYLKNSSKGLIEVAIGNNKKGIKVNKIHIHKIQELLGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P ++ ERR F+D+ + I P++ ++++ +++ RN+ L D + S Sbjct: 116 FSPEDLKLVKDGPRERRSFIDKEISQIMPKYYNYLVNYNKILIQRNKTLKNRIVDENLLS 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCA 242 + +A G I + R + I ++ + E +K N + ++ ++ + + Sbjct: 176 VYDESLANYGAYIYVLRRDFIKKIAKISNEMHKKLTGNNEELLITYKNQINLTDEDTVKD 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 K++ KL R+ D +R T G H+ DL + D + + +GS G+Q+ + + L+ Sbjct: 236 AKDKLLSKLESNRQRDIETRMTKYGIHKDDLNIFINDLDVKL-YGSQGQQRTASISLKLS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361 LI P+L+LD++ + LDE ++ L + D Q+F+T + + +E+ Sbjct: 295 EIELIKQEMNDNPVLILDDVFSELDETRQKLLVENLGD--VQMFITSAELAHKRIFDESE 352 Query: 362 AKFMRISNHQALCI 375 I + I Sbjct: 353 TAIFYIDKGKVTNI 366 >gi|153952674|ref|YP_001393439.1| recombination protein F [Clostridium kluyveri DSM 555] gi|189039621|sp|A5N460|RECF_CLOK5 RecName: Full=DNA replication and repair protein recF gi|146345555|gb|EDK32091.1| RecF [Clostridium kluyveri DSM 555] Length = 364 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 160/372 (43%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK+L + FRNY L + FD IFVGDN GKTNILE++ + S G+ R + ++ Sbjct: 1 MYIKYLKLINFRNYKELDIEFDKNINIFVGDNAQGKTNILESMYYCSIGKSPRTSKDKEL 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S+ + +I I E + + IN + + + EL L + Sbjct: 61 INWDNKESYIKVHILKKLFNKKIEIKIFKE-----GKKGININSIKVSKLSELMGVLNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--S 181 P +I + RR+FLD + ++ ++ + +++ RN +L + + Sbjct: 116 MFSPEDLKIIKESPVYRRKFLDIELCKFSKKYYYGLVQYNKVLTARNIILKKWNKGNYID 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+A+ G I R + LS + +F Sbjct: 176 ILQVYDKQLAKYGEVIIKLRNNYLKKLSEKGKVIHSDITSGIENIEFKYMTCLT---NFD 232 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++++ K L RK D TL GPHR D IV+ + GS G+Q+ ++ + Sbjct: 233 NIEDDLFKILEFNRKKDIYKGITLYGPHRDDFIVNINGVNVR-NFGSQGQQRTSILTMKF 291 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNE 360 A +I G P+LLLD++ + LD++++ + + DI Q F+T T + S+ + Sbjct: 292 ASLEIIKEIIGEYPVLLLDDVLSELDKNRQKYILSSIKDI--QTFITCTGIDDIKKSIID 349 Query: 361 TAKFMRISNHQA 372 A+ + + Sbjct: 350 EAQLFIVKKGKV 361 >gi|255659818|ref|ZP_05405227.1| DNA replication and repair protein RecF [Mitsuokella multacida DSM 20544] gi|260847893|gb|EEX67900.1| DNA replication and repair protein RecF [Mitsuokella multacida DSM 20544] Length = 365 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 157/371 (42%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RNY+ L L IF+G N GKTN++EA+ + S G R ++ Sbjct: 1 MYVRSLKLRNYRNYSELELALQPGINIFLGPNAQGKTNVVEAVYYASLGHSHRTHLDTEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + + + + R + +N IR + EL + Sbjct: 61 IRWDAGEGC-IILDFDRRGVMNHLEFQFSRA---KRRRILLNGHPIR-LKELIGSINTVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P + G RRRFLD + P + +++F R++ RN LL D S Sbjct: 116 FSPEDLFLIKGAPAGRRRFLDGEISQASPAYYHELVEFNRIISQRNSLLKRIRERRADKS 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + + Q+ KI R+E + L+ L ++ + L+++ + G D + Sbjct: 176 MLALWDEQLIASAEKIIRKRIEAVRKLNMLANLMQRRISSDQENLTVSYEVHGGEDMT-K 234 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 Y + L ++ D + T GPH DL++ + GS G+Q+ ++ + L Sbjct: 235 GFASWYNEMLRKSQETDILRGSTSYGPHHDDLVLTVNGINLR-TFGSQGQQRTGVLSLKL 293 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A + + TG PILLLD++ + LD +R L + + Q +T TD + F + Sbjct: 294 AELEFLRSETGEYPILLLDDVMSELDVKRRQQLLQFIRRERIQTLITATDAAYFPA-EGM 352 Query: 362 AKFMRISNHQA 372 ++ + + Q Sbjct: 353 GRYYHVQSGQI 363 >gi|219853347|ref|YP_002470469.1| hypothetical protein CKR_0004 [Clostridium kluyveri NBRC 12016] gi|219567071|dbj|BAH05055.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 367 Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 160/372 (43%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK+L + FRNY L + FD IFVGDN GKTNILE++ + S G+ R + ++ Sbjct: 4 MYIKYLKLINFRNYKELDIEFDKNINIFVGDNAQGKTNILESMYYCSIGKSPRTSKDKEL 63 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S+ + +I I E + + IN + + + EL L + Sbjct: 64 INWDNKESYIKVHILKKLFNKKIEIKIFKE-----GKKGININSIKVSKLSELMGVLNVV 118 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--S 181 P +I + RR+FLD + ++ ++ + +++ RN +L + + Sbjct: 119 MFSPEDLKIIKESPVYRRKFLDIELCKFSKKYYYGLVQYNKVLTARNIILKKWNKGNYID 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+A+ G I R + LS + +F Sbjct: 179 ILQVYDKQLAKYGEVIIKLRNNYLKKLSEKGKVIHSDITSGIENIEFKYMTCLT---NFD 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++++ K L RK D TL GPHR D IV+ + GS G+Q+ ++ + Sbjct: 236 NIEDDLFKILEFNRKKDIYKGITLYGPHRDDFIVNINGVNVR-NFGSQGQQRTSILTMKF 294 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNE 360 A +I G P+LLLD++ + LD++++ + + DI Q F+T T + S+ + Sbjct: 295 ASLEIIKEIIGEYPVLLLDDVLSELDKNRQKYILSSIKDI--QTFITCTGIDDIKKSIID 352 Query: 361 TAKFMRISNHQA 372 A+ + + Sbjct: 353 EAQLFIVKKGKV 364 >gi|306820917|ref|ZP_07454537.1| recombination protein F [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551031|gb|EFM39002.1| recombination protein F [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 356 Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 168/365 (46%), Gaps = 15/365 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I +N+ +RNY +L L F + +G NG GKTNI+EA+ FLS + FR +V Sbjct: 1 MQINNINLKNYRNYENLSLDFSENINMIIGQNGQGKTNIVEAVHFLSFAKSFRTNRDKEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S + + ++ ++ I I++ D ++V IN I + +L + + Sbjct: 61 INFGKDSAY-IKSSIQNIDDSYTIDIRISNLDKKAVN---INKNPISKISDLMGIVNVVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P +I S RR F+++ + I P + ++D+ + + +N LL D+ Sbjct: 117 FSPEDTKIVSDTPSFRRGFMNKEISQIKPLYYNILLDYNQTLENKNSLLKTQNPDTIMLD 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q++ KI R + I +S + E K + L + + K+++ K Sbjct: 177 IYDEQLSAYMEKIIAYRKDFIKQISVIANETHGKISSQKENLIINYSPNIKYEK-----K 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ K L R D + + G H+ D+ + D I GS G++K + + L+ Sbjct: 232 EDIFKLLSSSRADDMIRGTSSKGIHKDDIEIMIGDIDIR-KFGSQGQKKTATIALKLSEI 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 LI N P+++LD+I + LD ++R L + + Q F+T T+K D + K+ Sbjct: 291 ELIYNMKKEYPVVILDDIFSELDINRRKMLIEKL--LNIQTFITTTEKIDID---KEIKY 345 Query: 365 MRISN 369 + + Sbjct: 346 FEVKD 350 >gi|260437692|ref|ZP_05791508.1| DNA replication and repair protein RecF [Butyrivibrio crossotus DSM 2876] gi|292809918|gb|EFF69123.1| DNA replication and repair protein RecF [Butyrivibrio crossotus DSM 2876] Length = 361 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 163/372 (43%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ FRNY + ++ FD I GDN GKTNILEAI + + + +++ Sbjct: 1 MIIKSIDLQNFRNYETEKIEFDENTNILYGDNAQGKTNILEAIFLSGTSKSHKGSKDSEI 60 Query: 65 TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 S T + ++ DI I+ + + +N V I+ EL + I Sbjct: 61 INFLKDESHIKTVISKKEIDYRIDIHIR-----KNKSKGIAVNGVPIKKSSELYGIVNIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180 + P I RRRF+D + +D + +I++ + + RNRLL + YF Sbjct: 116 FFSPEDLNIIKAGPFARRRFMDMEMCQLDKIYVNSLINYNKAIDQRNRLLKDIYFSPYLE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + + G +I R IN L+ +I + + + + Sbjct: 176 DTMDIWDENILKYGSEIIRKRESFINELNEIIGKIHFTLSGGRENIVIKY--------EP 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 C +EE+ L R D + T GPHR D+ + D +GS G+Q+ + + Sbjct: 228 CVKEEEFESVLKSTRDRDKKQKSTCSGPHRDDI-IFLIDNVDIRKYGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA ++ G PILLLD++ + LD ++N L + +I + + TG D+ + + N Sbjct: 287 LAEIEIVKKQIGDTPILLLDDVLSELDSSRQNYLLNSIHNIQTIMTCTGLDEFINNRFNV 346 Query: 361 TAKFMRISNHQA 372 + +++N + Sbjct: 347 N-RIFKVTNGKV 357 >gi|118587496|ref|ZP_01544921.1| DNA repair protein RecF [Oenococcus oeni ATCC BAA-1163] gi|118432146|gb|EAV38887.1| DNA repair protein RecF [Oenococcus oeni ATCC BAA-1163] Length = 373 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 81/378 (21%), Positives = 155/378 (41%), Gaps = 16/378 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRNY SL++ F + +GDN GKTN+LEAI LS R R + D+ Sbjct: 1 MFLNSLKLKDFRNYKSLQVDFSNSINVLIGDNAQGKTNLLEAIYILSMARSHRDNNDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F+ + G LE R ++ + + +N + + + +L Sbjct: 61 INWSSD-----FSDITGEVQSKMGKFPLEVRITKTGKKVFVNHLTENRLSDYIGNLHTVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------Y 177 P + G RR+F+D + + ++ + +++ RN L Sbjct: 116 FAPEDLDLVKGSPGVRRKFIDSEFGQMSANYLFNLLQYRSVLKNRNAYLKNIKWIGNNPK 175 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-PHIKLSLTGFLDGKF 236 D + + Q+ + G +I R ++ L + + + + + F Sbjct: 176 IDEDYLKVLNDQLIDFGSEIIFQRFVLVKELEKYSYQIHKAISRNEKLTIKYASFSGIDD 235 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + + + + +L + + + T +GPH DL K + + S G+Q+ Sbjct: 236 QSTKEEISKIFNNQLLKNKTRELFLKSTSVGPHHDDLKFSINGKEVG-SFASQGQQRTTA 294 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA ++ TG PILLLD++ + LD D++ L + D Q F+T T S + Sbjct: 295 LSVRLAEIEMMKYETGEYPILLLDDVLSELDGDRQTQLLNFIQDK-VQTFLTTTSLSDVE 353 Query: 357 -SLNETAKFMRISNHQAL 373 L + K ++ + Sbjct: 354 RDLIKDPKIYQVKGGTLV 371 >gi|319405030|emb|CBI78640.1| DNA replication and repair protein [Bartonella sp. AR 15-3] Length = 370 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 166/369 (44%), Positives = 224/369 (60%), Gaps = 6/369 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RNY SL L QH + G NGVGKTN+LEA+SFLSPGRG RRA Y+D+ Sbjct: 1 MAVRQLKLENYRNYCSLALHLLGQHVVLTGRNGVGKTNLLEALSFLSPGRGLRRAPYSDI 60 Query: 65 -TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 GS + F FAR++ + G A+I LE D R + IN V D L + I Sbjct: 61 SCSEGSGTGFVVFARLQCALYGEANIGTALEANDG--GRKVHINGVNEAS-DCLMDYCHI 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S L PSMD +F+G +++RRRFLDRMV +ID H RR+ D++R+MR RNRL + D +W Sbjct: 118 SILTPSMDGLFTGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDRNDDRAW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFC 241 ++E QMAEL I ARV++I L+ + + FP L + GFL+ + S Sbjct: 178 LDALELQMAELATAIAAARVDIIQLLNDMFAQVSAWIPFPRAFLQVDGFLEKALSETSAI 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++E++ +L + R +D + R L GPHR+DL V Y DK + STGEQK +L G+ L Sbjct: 238 EVEEQFLYRLRNNRAIDCAAGRALEGPHRTDLQVFYADKNMDATFCSTGEQKALLTGLVL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 HARL S + PILLLDEI+AH D +R ALF I+ D+G Q FMTGTD +FDSL Sbjct: 298 CHARLTSTISKMTPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357 Query: 362 AKFMRISNH 370 A+F I N Sbjct: 358 AEFFEIENG 366 >gi|52424542|ref|YP_087679.1| recombination protein F [Mannheimia succiniciproducens MBEL55E] gi|81691468|sp|Q65VB6|RECF_MANSM RecName: Full=DNA replication and repair protein recF gi|52306594|gb|AAU37094.1| RecF protein [Mannheimia succiniciproducens MBEL55E] Length = 360 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 161/369 (43%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN +++ L FD VG+NG GKT++LEA+ +L GR F+ + V Sbjct: 1 MAIARLIVENFRNISAVDLEFDHGFNFLVGNNGSGKTSLLEALFYLGHGRSFKSSVTTRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F+ R+ E + S+ L+ + ++IN + +L L + Sbjct: 61 IRYDQP-HFTLHGRI--RELQHEWSVGLQKQRKDGNTIVKINGEDGNKISDLAHLLPMQI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F P RL++ RN L + Y D + Sbjct: 118 ITPEGLTLLNGGPSYRRAFLDWGLFHHQPNFHSAWSALHRLLKQRNAALNQTY-DYNMLK 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R + ALS I E + P + + ++ + D Sbjct: 177 PWDMELAKLAHQVSQWRADYAEALSPEI-EQTCRLFLPELDIHVSFHQGWEKDT------ 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + + D T+ GP ++D + S G+ K+++ + LA Sbjct: 230 -DYAQLLTENFERDKAIGYTVSGPQKADFRFKSNGLPVEDVL-SRGQLKLLMCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363 + I L+D+ ++ LDE KR L + + + SQ+F+T + E + Sbjct: 288 EHLMAQKNRHCIFLIDDFASELDETKRALLAQRLQNSNSQVFVTAISPEQLKQMQPEKHR 347 Query: 364 FMRISNHQA 372 ++ N Q Sbjct: 348 TFQVVNGQI 356 >gi|163814984|ref|ZP_02206371.1| hypothetical protein COPEUT_01137 [Coprococcus eutactus ATCC 27759] gi|158449667|gb|EDP26662.1| hypothetical protein COPEUT_01137 [Coprococcus eutactus ATCC 27759] Length = 369 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 91/359 (25%), Positives = 156/359 (43%), Gaps = 20/359 (5%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + I+ + ++ +RNY L++ F I G+N GKTNILE+I + + R Sbjct: 1 MVKDMYIESIELNNYRNYRKLKVEFGKNTNILYGNNAQGKTNILESIYMAATTKSHRGTK 60 Query: 61 YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 D+ RIG S F R + D+ ++ + + I+ + IR EL Sbjct: 61 DRDIIRIGEDESHIRLFLRKRDVSHKIDMHLR-----KSKNKGVAIDGIAIRRATELYGL 115 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 L + + P I ERRRF+D + I + + + + +++ RN LL + Y++ Sbjct: 116 LNVIFFSPEDLSIIKNGPAERRRFMDLELCQISRLYYQNLASYNKILNQRNNLLKQIYYN 175 Query: 180 SSW---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 S Q+ + G KI R I+ ++ +I + + KL + Sbjct: 176 KSLIDTLDVWNIQLVDYGSKIIKERKNFIDMMNDIICDIHSRLTGGREKLEIVY------ 229 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + + + L + + D T GPHR D+ + +GS G+Q+ V Sbjct: 230 --EYNVNENNFEDVLREKLETDLKYSSTQAGPHRDDISF-LINGIDARKYGSQGQQRTVA 286 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + + +A +L+ PILLLD++ + LD D+RNAL + DI Q +T T F Sbjct: 287 LSLKMAEIKLVKKIISDNPILLLDDVMSELDTDRRNALIDEIKDI--QTIITCTGYDEF 343 >gi|319407988|emb|CBI81642.1| DNA replication and repair protein [Bartonella schoenbuchensis R1] Length = 390 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 168/375 (44%), Positives = 231/375 (61%), Gaps = 6/375 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ ++ L ++ +RNY S + QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+ Sbjct: 9 HKVTVRQLKLTHYRNYCSFNIHLSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAYS 68 Query: 63 DVT-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 D++ G + F FAR++ + G +I LET D S R + IN V D L + Sbjct: 69 DISFSKGVGAAFVVFARLQCALYGEVNIGTTLETSD--SGRKVHINGVH-ESCDCLTDYC 125 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 +S L PSMD +F G S++RRRFLDRMV AID H RR+ D+++ MR RNRL +G + Sbjct: 126 HVSVLTPSMDGLFMGPSLDRRRFLDRMVLAIDSLHGRRIADYDKAMRARNRLFLDGNENC 185 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQS 239 +W ++EAQMAEL I ARV++I L+ + + FP L + GFL+ S Sbjct: 186 AWFDALEAQMAELATAIAAARVDVIQLLNDMSEQTSSYTPFPRAFLQIDGFLEKALGTTS 245 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++E++ +L R +D +RRTL GPHR+DL V Y DK I STGEQK +L G+ Sbjct: 246 AIEVEEQFLDRLRRNRPIDCAARRTLEGPHRTDLQVFYADKNIAATSCSTGEQKALLTGL 305 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L HARL + PILLLDE++AHLD +R ALF I+ D+GSQ FMTGTD+ +FDSL Sbjct: 306 VLCHARLTGMMSNMTPILLLDEMAAHLDSRRRAALFDILDDLGSQTFMTGTDRILFDSLK 365 Query: 360 ETAKFMRISNHQALC 374 A+F I + L Sbjct: 366 GRAEFFEIEDGALLQ 380 >gi|291536987|emb|CBL10099.1| recF protein [Roseburia intestinalis M50/1] Length = 368 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 19/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + ++ FRNY +L++ FD I GDN GKTNILEA + + + ++ Sbjct: 1 MIIQSIELNNFRNYENLQISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEM 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + + T G + D+ +K + + +N + ++ EL L I Sbjct: 61 IRFGTNEAHLRTMVLKNGKQYQIDMHLKHNRS-----KGIAVNKIPMKKASELFGILNIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERR FLD + +D + + ++ +++ RN+LL + + Sbjct: 116 FFSPEDLNIIKNGPSERRHFLDAELCQLDKIYLSDLSNYNKILNQRNKLLKDMVYRPELS 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ + G KI R + + L+ L+ E + + +L L+ D Sbjct: 176 DTLPVWDMQLIDTGKKIIRRREQFVKELNELVHEIHYRISGGREELFLSYEPSVSAD--- 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++L + D +T +GPHR DL+ I GS G+Q+ + + Sbjct: 233 -----LLEQELERVKPRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ + P+LLLD++ + LD +++N L + D + I TG D+ + + E Sbjct: 287 LSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDEFIRNRF-E 345 Query: 361 TAKFMRISNHQAL 373 K + + Q Sbjct: 346 INKVFEVISGQVF 358 >gi|254230347|ref|ZP_04923733.1| Recombinational DNA repair ATPase [Vibrio sp. Ex25] gi|262392781|ref|YP_003284635.1| DNA recombination and repair protein RecF [Vibrio sp. Ex25] gi|151937139|gb|EDN56011.1| Recombinational DNA repair ATPase [Vibrio sp. Ex25] gi|262336375|gb|ACY50170.1| DNA recombination and repair protein RecF [Vibrio sp. Ex25] Length = 359 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 81/369 (21%), Positives = 154/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEA+ L GR F+ + V Sbjct: 1 MPLSRLIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF +P + F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYQAWGRFKRLNKQRNALLKTANSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R I + + E + + P ++ L + D Sbjct: 177 YWDQEMAGLAENISQWRASYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YHEILEKNFERDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++ K Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDNGK 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 LFHVEHGRI 356 >gi|210624033|ref|ZP_03294150.1| hypothetical protein CLOHIR_02102 [Clostridium hiranonis DSM 13275] gi|210153240|gb|EEA84246.1| hypothetical protein CLOHIR_02102 [Clostridium hiranonis DSM 13275] Length = 368 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 175/371 (47%), Gaps = 12/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +RNY L + F+ + + +G NG GKTNI E+I L+ G+ FR ++ Sbjct: 1 MKLKNLQLVNYRNYDKLYIEFNDRINLLLGSNGQGKTNIAESIYLLAFGKSFRTNRDREL 60 Query: 65 TRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + + G G+ +I+I ++ + +++N + I + EL ++ + Sbjct: 61 IKFNTENLYVGGGYEKNGRNGMVEIAI------SKAKKGIKVNKIPIVKLAELLGNINVV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P R+ RR F+DR + I P + + + +++ RN+LL D + Sbjct: 115 IFSPEDLRLVKDGPKIRRSFIDREISQIVPGYYGLLTGYNKILANRNKLLKNMNPDLNLL 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + +A+ G KI + R + I ++ + + + L++ + + ++ Sbjct: 175 DVYDESLADYGSKIFMFRKKFIERIAEISKDMHARLTDNKEDLNVIYKSQIQINDE-SSV 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K+++ L D RK D R + G H+ D+++ + + +GS G+Q+ + + L+ Sbjct: 234 KDKFINILKDKRKHDLDMRISGYGIHKDDILIQINGLDVRL-YGSQGQQRTASISLKLSE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362 LI+ G P+L+LD++ + LDE ++ L + D Q+F+T + + L+ Sbjct: 293 IELINREVGEYPLLILDDVFSELDEKRQKLLVDNLKD--VQMFITTAEYLHKNVLDMNNT 350 Query: 363 KFMRISNHQAL 373 I N + + Sbjct: 351 TVFYIDNGKVV 361 >gi|116490130|ref|YP_809653.1| DNA replication and repair protein RecF [Oenococcus oeni PSU-1] gi|290889524|ref|ZP_06552614.1| hypothetical protein AWRIB429_0004 [Oenococcus oeni AWRIB429] gi|122277679|sp|Q04HR3|RECF_OENOB RecName: Full=DNA replication and repair protein recF gi|116090855|gb|ABJ56009.1| DNA replication and repair protein RecF [Oenococcus oeni PSU-1] gi|290480722|gb|EFD89356.1| hypothetical protein AWRIB429_0004 [Oenococcus oeni AWRIB429] Length = 373 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 155/378 (41%), Gaps = 16/378 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRNY SL++ F + +GDN GKTN+LEAI LS R R + D+ Sbjct: 1 MFLNSLKLKDFRNYKSLQVDFSNSINVLIGDNAQGKTNLLEAIYILSMARSHRDNNDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F+ + G LE R R+ + + +N + + + +L Sbjct: 61 INWSSD-----FSDITGEVQSKMGKFPLEVRITRTGKKVFVNHLTENRLSDYIGNLHTVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------Y 177 P + G RR+F+D + + ++ + +++ RN L Sbjct: 116 FAPEDLDLVKGSPGVRRKFIDSEFGQMSANYLFNLLQYRSVLKNRNAYLKNIKWIGNNPK 175 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-PHIKLSLTGFLDGKF 236 D + + Q+ + G +I R ++ L + + + + + F Sbjct: 176 IDEDYLKVLNDQLIDFGSEIIFQRFVLVKELEKYSYQIHKAISRNEKLTIKYASFSGIDD 235 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + + + + +L + + + T +GPH DL K + + S G+Q+ Sbjct: 236 QSTKEEISKIFNNQLLKNKTRELFLKSTSVGPHHDDLKFSINGKEVG-SFASQGQQRTTA 294 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA ++ TG PILLLD++ + LD D++ L + D Q F+T T S + Sbjct: 295 LSVRLAEIEMMKYETGEYPILLLDDVLSELDGDRQTQLLNFIQDK-VQTFLTTTSLSDVE 353 Query: 357 -SLNETAKFMRISNHQAL 373 L + K ++ + Sbjct: 354 RDLIKDPKIYQVKGGTLV 371 >gi|240145739|ref|ZP_04744340.1| DNA replication and repair protein RecF [Roseburia intestinalis L1-82] gi|257202155|gb|EEV00440.1| DNA replication and repair protein RecF [Roseburia intestinalis L1-82] Length = 368 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 89/373 (23%), Positives = 163/373 (43%), Gaps = 19/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + ++ FRNY +L + FD I GDN GKTNILEA + + + ++ Sbjct: 1 MIIQSIELNNFRNYENLHISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEM 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + + T G + D+ +K + + +N + ++ EL L I Sbjct: 61 IRFGTNEAHLRTMVLKNGKQYQIDMHLKHNRS-----KGIAVNKIPMKKASELFGILNIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERR FLD + +D + + ++ +++ RN+LL + + Sbjct: 116 FFSPEDLNIIKNGPSERRHFLDAELCQLDKIYLSDLSNYNKILNQRNKLLKDMVYRPELS 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+A+ G KI R + + L+ L+ E + + +L L+ D Sbjct: 176 DTLPVWDMQLADTGKKIIRRREKFVKELNELVHEIHYRISGGREELFLSYEPSVSAD--- 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++L + D +T +GPHR DL+ I GS G+Q+ + + Sbjct: 233 -----LLEQELERVKLRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ + P+LLLD++ + LD +++N L + D + I TG D+ + + E Sbjct: 287 LSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDEFIRNRF-E 345 Query: 361 TAKFMRISNHQAL 373 K + + Q Sbjct: 346 INKVFEVISGQVF 358 >gi|254437923|ref|ZP_05051417.1| hypothetical protein OA307_2793 [Octadecabacter antarcticus 307] gi|198253369|gb|EDY77683.1| hypothetical protein OA307_2793 [Octadecabacter antarcticus 307] Length = 369 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 130/368 (35%), Positives = 198/368 (53%), Gaps = 9/368 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +S FR++ L D + G NG GKTNILEA+S LSPGRG RRAS D+TR Sbjct: 6 LSHLTLSHFRSHKRATLDLDGRTVAIYGPNGAGKTNILEAVSILSPGRGLRRASSEDMTR 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + A + + +I E R + D L + R+ WL+ Sbjct: 66 RPEALGWKVTADLTSLNQRHEIESWSENGGSRQTKI----DGKAAAQTALGRIGRVLWLI 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P+MDR++ + RRRFLDR + +P H + +E+ MR RNRLL + D+ W S++ Sbjct: 122 PAMDRLWIEGAEGRRRFLDRATLSFEPGHADAALKYEKAMRERNRLLKDMVRDAHWYSAL 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E QMA+ G +I+ R+E ++ L++ + + FP L+LT D D + Sbjct: 182 ERQMADAGAQIHRNRLETLDLLTN--AQQAAQTAFPTAWLTLT-HSDPACDAPDDPI--A 236 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + R D + RTLIGPHR+DL + K + STGEQK +L+ + LA+AR Sbjct: 237 LLAAFANNRPRDMAAGRTLIGPHRADLDAIFAAKDVPAKDCSTGEQKALLISLILANARA 296 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 +++ G PILLLDE++AHLD +R AL+ ++ +G+Q FMTGT +FD L A+++ Sbjct: 297 LADDFGAPPILLLDEVAAHLDATRRAALYSEISALGAQAFMTGTGLELFDELGAAAQYVH 356 Query: 367 ISNHQALC 374 +++ + Sbjct: 357 VTDENGVS 364 >gi|188579290|ref|YP_001922735.1| DNA replication and repair protein RecF [Methylobacterium populi BJ001] gi|179342788|gb|ACB78200.1| DNA replication and repair protein RecF [Methylobacterium populi BJ001] Length = 385 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 141/377 (37%), Positives = 203/377 (53%), Gaps = 4/377 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + ++ L +FRN+ L L + VG+NG GKTNILEA+S PGRG RRA Sbjct: 4 LPGGTRLTRLIARDFRNHIDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRAD 63 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNK 118 A + R+G P F+ A +E E + E D R R +I+ ++ Sbjct: 64 LATMARVGGPGGFAVSATLETAEAEHRLGSGYEPPGYDGRGTRVCRIDGAPAPSPVAFSE 123 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 LRI WL P D +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E Sbjct: 124 FLRIVWLTPDFDGLFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPD 183 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD 237 D W ++E ++AELGV + +AR E + L LI E FP + L G LD Sbjct: 184 DGRWLDAVEREVAELGVAVALARRETVERLDRLIAETRDDAAPFPWASIRLEGDLDDLVA 243 Query: 238 Q-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ + + L GR D + RTLIGP +DL+V + K + A STGEQK +L Sbjct: 244 VWPALEAEDRFRRALMQGRHRDRAAGRTLIGPQTTDLLVRHGPKDVPAATASTGEQKALL 303 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +G+ LAHARL+ +G P++LLDE++AHLD +R LF + + Q++MTG D ++F Sbjct: 304 IGLVLAHARLVRAMSGLTPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFT 363 Query: 357 SLNETAKFMRISNHQAL 373 L A + I++ + + Sbjct: 364 ELQGRADMVNIADGRIV 380 >gi|319898311|ref|YP_004158404.1| DNA replication and repair protein [Bartonella clarridgeiae 73] gi|319402275|emb|CBI75814.1| DNA replication and repair protein [Bartonella clarridgeiae 73] Length = 380 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 170/377 (45%), Positives = 231/377 (61%), Gaps = 10/377 (2%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ ++ L ++ +RNY SL L QH + G NG GKTN+LEA+SFLSPGRG RRA+Y+ Sbjct: 9 HKVAVRQLKLANYRNYCSLVLHLLGQHVVLTGRNGAGKTNLLEALSFLSPGRGLRRAAYS 68 Query: 63 DVT---RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 DV+ R G+ F FAR+E + G +I LE D S R + IN + D L Sbjct: 69 DVSFSERKGA--GFVVFARLECALYGEVNIGTALEVND--SSRKVHINGINEAS-DCLTD 123 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + IS L PSMDR+F+G S++RRRFLDRMV +ID H RR+ D++R+MR RNRL + Sbjct: 124 YCHISILTPSMDRLFTGPSLDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDRNN 183 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D +W ++E QMAEL I AR+++I L+ + + FP L + GFL+ + Sbjct: 184 DRAWLDALEVQMAELATAIAAARIDVIQLLNDMFAQTSSCIPFPRALLKVDGFLEKALRE 243 Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S ++E++ +L R +D + RTL GPHR+DL V Y DK + STGEQK +L Sbjct: 244 TSAIEVEEQFLHRLRKNRAIDCAAGRTLEGPHRTDLQVFYADKNMDATFCSTGEQKALLT 303 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 G+ L HARL S + APILLLDEI+AH D +R ALF I+ D+G Q FMTGTD +FDS Sbjct: 304 GLVLCHARLTSTISNMAPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHVLFDS 363 Query: 358 LNETAKFMRISNHQALC 374 L A+F I N L Sbjct: 364 LKGRAEFFEIENGILLS 380 >gi|197334005|ref|YP_002154783.1| DNA replication and repair protein RecF [Vibrio fischeri MJ11] gi|226737848|sp|B5FEV5|RECF_VIBFM RecName: Full=DNA replication and repair protein recF gi|197315495|gb|ACH64942.1| DNA replication and repair protein RecF [Vibrio fischeri MJ11] Length = 359 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 163/369 (44%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I++FRN + + +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLIINDFRNITTCDIQLSPGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F R E L ++ I + + D + ++I + + +L K L + Sbjct: 61 IRNDCDELF-IHGRFTTPE-LFELPIGINKQRDGTT-EVKIGGESGQKLAQLAKVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF ++P +RL + RN LL S Sbjct: 118 IHPEGFELVTDGPKFRRAFIDWGVFHVEPAFYDAWSRVKRLTKQRNALLKTANSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L KI+ RV+ IN +S + Q P + L+ + + Sbjct: 177 YWDLELAQLSEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWDRETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T+ GP+++DL + + S G+ K+++ + LA Sbjct: 231 --YAELLKKNFERDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + +Q+F++ T + + D ++ +K Sbjct: 288 QHLTEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDDESK 347 Query: 364 FMRISNHQA 372 I + + Sbjct: 348 MFEIEHGKI 356 >gi|163802135|ref|ZP_02196030.1| recombination protein F [Vibrio sp. AND4] gi|159173940|gb|EDP58750.1| recombination protein F [Vibrio sp. AND4] Length = 359 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 154/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT+ILEA+ L GR F+ + V Sbjct: 1 MPLSRLIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSILEAVYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF +P F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R I + + E + + P ++ L + D Sbjct: 177 YWDQEMARLAENISQWRALYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YHEILEKNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + G+Q+F++ TD + D L++T K Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDNQIADMLDDTGK 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 LFHVEHGRI 356 >gi|167629174|ref|YP_001679673.1| DNA replication and repair protein recf [Heliobacterium modesticaldum Ice1] gi|226737804|sp|B0TAL0|RECF_HELMI RecName: Full=DNA replication and repair protein recF gi|167591914|gb|ABZ83662.1| DNA replication and repair protein recf [Heliobacterium modesticaldum Ice1] Length = 372 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 166/372 (44%), Gaps = 11/372 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ + ++ FRNY L++ F IFVG NG GKTN+LE+I+ LS G R A A++ Sbjct: 1 MQIQAIELAHFRNYRGLQVDFMPGVNIFVGANGQGKTNLLESIALLSGGGSHRDARDAEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + R++ M + +E + ++N+ +R + +L++ + Sbjct: 61 VQWQE-----AYYRIKAMGTADGQPVVIELAFGGERRKLAKVNNRRLRRIADLSETMNTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDS 180 P + G +RRR+LDR + P + + + R++ RN LL G + Sbjct: 116 VFSPEDLSLVKGSPAQRRRYLDRELSQASPAYGDVLSRYARVLTQRNSLLRRLREGSATA 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A L V+ R++ + ++ + + + ++ LT Sbjct: 176 AELELWDDQLAPLAVETLARRLDGLARIAPYARQIYRGLSRDKEQIELTYRSSFPLPDDR 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E Y K L + R + + TL GPHR DL + + I +GS G+Q+ + + + Sbjct: 236 SRWLEAYRKALQERRAEEIARQATLTGPHRDDLQLFLNGRDARI-YGSQGQQRSIALSLK 294 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359 LA I PI+LLD++ + LD D+R L + Q+F+T T F Sbjct: 295 LAEIAFIHQIKKEYPIVLLDDVMSELDPDRRQQLLSELESKNIQVFITTTHLHAFSPEQL 354 Query: 360 ETAKFMRISNHQ 371 A RI Q Sbjct: 355 GRAGIYRIQAGQ 366 >gi|255027379|ref|ZP_05299365.1| recombination protein F [Listeria monocytogenes FSL J2-003] Length = 340 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 149/342 (43%), Gaps = 11/342 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG S+ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + + Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASITLNGDD 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + I Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 LA LI TG P+LLLD++ + LD+ +++ L + Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK 336 >gi|240136786|ref|YP_002961253.1| putative RecF protein [Methylobacterium extorquens AM1] gi|240006750|gb|ACS37976.1| putative RecF protein [Methylobacterium extorquens AM1] Length = 385 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 143/377 (37%), Positives = 203/377 (53%), Gaps = 4/377 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + ++ L +FRN+ L L + VG+NG GKTNILEA+S PGRG RRA Sbjct: 4 LPGGPRLTRLIARDFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRAD 63 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNK 118 A + R+G P F+ A +E E E D R R +I+ ++ Sbjct: 64 LATMARVGGPGGFAVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSE 123 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 LRI WL P D +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E Sbjct: 124 FLRIVWLTPDFDGLFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPD 183 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD 237 D W ++E ++AELGV + +AR E + L LI E FP L L G LD Sbjct: 184 DGRWLDAVEREVAELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLDDLVA 243 Query: 238 Q-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ + + L GR D + RTLIGP +DL+V + K + A STGEQK +L Sbjct: 244 VWPALEAEDRFRRALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALL 303 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +G+ LAHARL+ +G AP++LLDE++AHLD +R LF + + Q++MTG D ++F Sbjct: 304 IGLVLAHARLVRAMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFA 363 Query: 357 SLNETAKFMRISNHQAL 373 L A + I++ + + Sbjct: 364 ELEGRADMVNIADGRIV 380 >gi|227529859|ref|ZP_03959908.1| recombination protein F [Lactobacillus vaginalis ATCC 49540] gi|227350228|gb|EEJ40519.1| recombination protein F [Lactobacillus vaginalis ATCC 49540] Length = 374 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 146/374 (39%), Gaps = 16/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRNY L + F + +G N GKTN+LEAI LS R R + ++ Sbjct: 1 MILSELHLHNFRNYEDLTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTHNNREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S A + G+ + LE + ++N + + L Sbjct: 61 INWQHKS-----ATISGIVQKTSGRVPLELEFTSKGKRAKVNHLEQARLSTYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR F+D + ++ + L+R RN+ L + D Sbjct: 116 FAPEDLSLVKGAPALRRHFMDMEFSQMSSKYLYNAGQYRTLLRQRNKYLKQLKYGQQHDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+A G ++ IAR + + L + +K + +L L K ++ Sbjct: 176 VLLGVLSDQLAAYGAEVIIARYQFLQHLEKWASQLHEKISLNAEQLRLDYITQLKLNEE- 234 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +++ Y L + T+ GP R D+ K + + GS G+Q+ + Sbjct: 235 TTVEQAYQDLLGLYQSHVNWEIEKGTTMYGPQRDDIHFMVNGKNV-QSFGSQGQQRTTAL 293 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA L+ TG P+LLLD++ + LD ++ L D Q F+T T + Sbjct: 294 SVKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAFQDK-VQTFLTTTSLNDVAR 352 Query: 357 SLNETAKFMRISNH 370 L K I + Sbjct: 353 QLIHQPKIFEIEHG 366 >gi|269962693|ref|ZP_06177038.1| recF protein [Vibrio harveyi 1DA3] gi|269832616|gb|EEZ86730.1| recF protein [Vibrio harveyi 1DA3] Length = 359 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 155/369 (42%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + V Sbjct: 1 MPLSRLIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF +P F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R I + S + E + + P ++ L + D Sbjct: 177 YWDQEMARLAENISQWRALYIEQMKS-VAETICQTFLPEFEIQLKYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YHEILEKNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++T K Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDTGK 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 LFHVEHGRI 356 >gi|218528086|ref|YP_002418902.1| DNA replication and repair protein RecF [Methylobacterium chloromethanicum CM4] gi|218520389|gb|ACK80974.1| DNA replication and repair protein RecF [Methylobacterium chloromethanicum CM4] Length = 385 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 143/377 (37%), Positives = 203/377 (53%), Gaps = 4/377 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + ++ L +FRN+ L L + VG+NG GKTNILEA+S PGRG RRA Sbjct: 4 LPGGPRLTRLIARDFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRAD 63 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNK 118 A + R+G P F+ A +E E E D R R +I+ ++ Sbjct: 64 LATMARVGGPGGFAVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSE 123 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 LRI WL P D +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E Sbjct: 124 FLRIVWLTPDFDGLFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPD 183 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD 237 D W ++E ++AELGV + +AR E + L LI E FP L L G LD Sbjct: 184 DGRWLDAVEREVAELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLDDLVA 243 Query: 238 Q-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ + + L GR D + RTLIGP +DL+V + K + A STGEQK +L Sbjct: 244 VWPALEAEDRFRRALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALL 303 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +G+ LAHARL+ +G AP++LLDE++AHLD +R LF + + Q++MTG D ++F Sbjct: 304 IGLVLAHARLVRAMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFA 363 Query: 357 SLNETAKFMRISNHQAL 373 L A + I++ + + Sbjct: 364 ELEGRADMVNIADGRIV 380 >gi|163797312|ref|ZP_02191265.1| recombination protein F [alpha proteobacterium BAL199] gi|159177403|gb|EDP61959.1| recombination protein F [alpha proteobacterium BAL199] Length = 410 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 144/383 (37%), Positives = 222/383 (57%), Gaps = 13/383 (3%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + +R+ ++ L ++ FRNYA+ L D + G NG GKTN+LEA+SFL+PGRG RRA Sbjct: 21 VPHRLAVRRLTLTRFRNYAAESLDIDGPAVVLTGPNGAGKTNLLEAVSFLTPGRGLRRAR 80 Query: 61 YADVTRI-------GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 ++V R+ S + ++ ARV+G G +I + D R ++++ R Sbjct: 81 LSEVDRLVPADTIDTSSTAWAVAARVDGKLGAVNIGTGRDPDSDGERRLVRVDGAPARSQ 140 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 L H+ +SWL P+MDR+F + RRRFLDRMVFA DP H R+ +E R RNRL+ Sbjct: 141 STLGDHVTVSWLTPAMDRLFLDGASGRRRFLDRMVFAFDPEHSTRVNHYEHAWRERNRLI 200 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 +G D +W +++E +A G+ + AR ++ L+ + E + FP +L+L G +D Sbjct: 201 KDGVRDPAWFAALEETLAATGIAVAAARSSLVARLNQVCAET--EPPFPAAELTLDGTVD 258 Query: 234 GKFDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 D++ +++ L GR+ S GPHRSDL+V + K + STGEQ Sbjct: 259 RWLDEAPALEIEDRLRATLAAGRRPGSPE---AEGPHRSDLLVRHVPKNMPAERCSTGEQ 315 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 K +LVGI LAHARL + G +PILLLDE++AHLD+ +R ALF V +G Q ++TGTD+ Sbjct: 316 KALLVGIVLAHARLQAIEEGASPILLLDEVAAHLDDRRRTALFEAVLALGGQAWLTGTDR 375 Query: 353 SVFDSLNETAKFMRISNHQALCI 375 VF + + A+ + +++ + + Sbjct: 376 GVFAPIADRAQIVEVTDGRLAPV 398 >gi|322830736|ref|YP_004210763.1| DNA replication and repair protein RecF [Rahnella sp. Y9602] gi|321165937|gb|ADW71636.1| DNA replication and repair protein RecF [Rahnella sp. Y9602] Length = 362 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 152/372 (40%), Gaps = 14/372 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEA+ L GR FR V Sbjct: 1 MALTRLLIKDFRNIEAADLDPSPGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F +G + I + + D VR I+ V EL + L + Sbjct: 61 IRHDQPEFVLHARVDDGGDRELSIGLSKSRQGDSKVR---IDGSDGHKVSELAQMLPMQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR F+D F DP + RL++ RN L + + Sbjct: 118 ITPEGFTLLNGGPKYRRAFIDWGCFHHDPGFFIAWSNLRRLLKQRNAALRQ-VSRYAQIR 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I + P LS + + Sbjct: 177 AWDQELIPLAGRISEWRAAYSDAIAADISATCA-QFLPEFALSFSFQRGWDKET------ 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EY + L + D T GPH++D + D S G+ K+++ + LA Sbjct: 230 -EYGELLERNFERDRALTYTASGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD D+R L + +Q+F++ + V D + E K Sbjct: 288 EFLTRQSGRRCLYLLDDFASELDADRRRLLADRLKATQAQVFVSAISAEQVTDMMGEKGK 347 Query: 364 FMRISNHQALCI 375 R+ + + Sbjct: 348 MFRVEQGKIAVL 359 >gi|91228346|ref|ZP_01262274.1| recombination protein F [Vibrio alginolyticus 12G01] gi|269965276|ref|ZP_06179397.1| recF protein [Vibrio alginolyticus 40B] gi|91188106|gb|EAS74410.1| recombination protein F [Vibrio alginolyticus 12G01] gi|269830077|gb|EEZ84305.1| recF protein [Vibrio alginolyticus 40B] Length = 359 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 80/369 (21%), Positives = 153/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEA+ L GR F+ + V Sbjct: 1 MPLSRLIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF +P + F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYQAWGRFKRLNKQRNALLKTANSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R I + + E + + P ++ L + D Sbjct: 177 YWDQEMAGLAENISQWRASYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YHEILEKNFERDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ G I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++ K Sbjct: 288 QHLTEMAGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDNGK 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 LFHVEHGRI 356 >gi|153835129|ref|ZP_01987796.1| DNA replication and repair protein RecF [Vibrio harveyi HY01] gi|156972779|ref|YP_001443686.1| recombination protein F [Vibrio harveyi ATCC BAA-1116] gi|166221877|sp|A7N1F1|RECF_VIBHB RecName: Full=DNA replication and repair protein recF gi|148868401|gb|EDL67515.1| DNA replication and repair protein RecF [Vibrio harveyi HY01] gi|156524373|gb|ABU69459.1| hypothetical protein VIBHAR_00444 [Vibrio harveyi ATCC BAA-1116] Length = 357 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 83/369 (22%), Positives = 154/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + V Sbjct: 1 MPLSRLIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF +P F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R I + + E + + P ++ L + D Sbjct: 177 YWDQEMAHLAENISQWRALYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YHEILEKNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++T K Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDTGK 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 LFHVEHGRI 356 >gi|283480417|emb|CAY76333.1| DNA replication and repair protein recF [Erwinia pyrifoliae DSM 12163] Length = 397 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 149/369 (40%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 37 MALTRLLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 96 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R+ G E + + D VR I+ V EL + L + Sbjct: 97 IRHEQDAF-VLHGRIAGAERETSVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 152 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F +P + RL++ RN L + Sbjct: 153 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIR 211 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++A L +I+ R A+++ I + P +LS + + Sbjct: 212 AWDQELAPLAEQISQWRAAYSRAIAADINATCA-QFLPEFQLSFSFQRGWDKES------ 264 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D T GPH++D + + S G+ K+++ + LA Sbjct: 265 -DYAGLLERNFERDRALTYTASGPHKADFRIRAQGTPVE-DLLSRGQLKLLMCALRLAQG 322 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ G + L+D+ ++ LDE +R+ L + +Q+F++ FD +E K Sbjct: 323 EFLTRQNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMADEKGK 382 Query: 364 FMRISNHQA 372 + + Sbjct: 383 MFHVEQGKI 391 >gi|220920057|ref|YP_002495358.1| DNA replication and repair protein RecF [Methylobacterium nodulans ORS 2060] gi|219944663|gb|ACL55055.1| DNA replication and repair protein RecF [Methylobacterium nodulans ORS 2060] Length = 382 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 136/370 (36%), Positives = 202/370 (54%), Gaps = 5/370 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +FRN+ASL L VG+NG GKTNILEA+S +PGRG RRA +A + Sbjct: 8 RVTRLIARDFRNHASLDLGVSRPFVALVGENGAGKTNILEALSLFAPGRGLRRADFAAMA 67 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G P F+ + G G + E TR++R+ R +I+ +HLR+ Sbjct: 68 REGGPGGFAVSLNLAGPHGEHRVGTAWEPPQTREERAGRLCRIDGASAPSPTAFAEHLRV 127 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P +D +F G + ERRRFLDR+V A+D H R+ ER +R RNRLL E D+ W Sbjct: 128 VWLTPDLDALFRGPAGERRRFLDRLVLAVDAGHGARVSALERALRSRNRLLEERPDDTPW 187 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFDQ-SF 240 ++E ++AEL + + +AR E + L LI + FP + L G +D Sbjct: 188 LDAVEREVAELAIAVALARRETVERLDRLILASRDEASPFPWAGVRLEGEIDDLVAVWPA 247 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ + L R D + RTL GP SDL+V + K + STGEQK +L+G+ Sbjct: 248 VDAEDRFRAMLRQNRFRDRAAGRTLAGPQASDLLVRHGPKDVPAGTASTGEQKALLIGLV 307 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LAHARL++ +G P++LLDE++AHLD +R LF + + Q++MTG D ++F L Sbjct: 308 LAHARLVAGMSGLPPLVLLDEVAAHLDPRRRAGLFDALEALPGQVWMTGADPALFAELGN 367 Query: 361 TAKFMRISNH 370 + +++ Sbjct: 368 RGDLIAVADG 377 >gi|21961124|gb|AAM87653.1|AE014012_10 ssDNA and dsDNA binding protein [Yersinia pestis KIM 10] gi|45438596|gb|AAS64142.1| DNA metabolism protein [Yersinia pestis biovar Microtus str. 91001] Length = 440 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L A VG NG GKT++LEA+ L GR FR V Sbjct: 80 MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 139 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E A + + + D VR I+ V EL + L + Sbjct: 140 IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 195 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 196 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 254 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + + Sbjct: 255 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 307 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 308 -DYGELLARQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 365 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 366 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 425 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 426 MFRVEHGKI 434 >gi|253987486|ref|YP_003038842.1| recombination protein F [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253778936|emb|CAQ82096.1| dna replication and repair protein recf [Photorhabdus asymbiotica] Length = 363 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 155/369 (42%), Gaps = 13/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN A L VG NG GKT++LEAI L GR FR V Sbjct: 1 MTLTRLFIRDFRNIADADLPLATGFNFLVGPNGSGKTSVLEAIYTLGHGRSFRSIQSGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F R+E E + SI L + + ++I+ + EL K L + Sbjct: 61 IRHNCDEF-VLHGRLEQRENARESSIGLSKNRNGDSK-VRIDGSDGGKIAELAKMLPMQL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR F+D F DPR ++ +RL++ RN L + S Sbjct: 119 ITPEGFTLLNGGPKYRRAFIDWGCFHNDPRFFSAWVNLKRLLKQRNAALRQ-VTHYSQIR 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +IN R E + + I + K+ P L + + Sbjct: 178 PWDQELAPLANQINQWRTEYVTNIIQGIADTC-KQFLPEFILRFSFQQGWDKES------ 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T GPH++DL + + S G+ K+++ + LA Sbjct: 231 -DYAELLERQFERDRALTYTASGPHKADLRIRVEGTPVEDML-SRGQLKLLMCALRLAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363 + G + LLD+ ++ LD +R L + +Q+F++ V D L+ ++ Sbjct: 289 EYFTRQNGQQCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAISPGQVTDMLDGNSR 348 Query: 364 FMRISNHQA 372 R+ N + Sbjct: 349 MFRVENGKI 357 >gi|269103822|ref|ZP_06156519.1| DNA recombination and repair protein RecF [Photobacterium damselae subsp. damselae CIP 102761] gi|268163720|gb|EEZ42216.1| DNA recombination and repair protein RecF [Photobacterium damselae subsp. damselae CIP 102761] Length = 360 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 155/369 (42%), Gaps = 13/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN A L +G NG GKT++LEA+ +L GR FR V Sbjct: 1 MALTRLIVKDFRNIADCDLELSPSFNFLIGANGSGKTSVLEAVHYLGHGRSFRSHLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+G + + + D + ++I + + +L + L + Sbjct: 61 IRHEQSELF-VHGRVQGEGTQLPQPVGINKKRDGTT-EVKIAGEGNQKLAQLAQILPLQL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G RR F+D VF ++P+ + +RL + RN LL S Sbjct: 119 ITPEGFDLLIGGPKFRRAFIDWGVFYVEPKFFQAWSRLKRLTKQRNALLKTATSYRE-LS 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +I++ R + + A+ E P + L + + + Sbjct: 178 YWDQELAQLAEQIDLWRSDYLAAVKQKANEIC-LGFLPEFDIQLGYYRGWEKETP----- 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D T GPH++DL + + S G+ K+++ + LA Sbjct: 232 --YGELLRRNFERDCQLGYTASGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ TG I L+D+ ++ LD +R L + + + +Q+F++ D +E K Sbjct: 289 LHLTEVTGKQCIYLIDDFASELDSHRRALLAQRLKETHAQVFISAISADQITDMQDEKGK 348 Query: 364 FMRISNHQA 372 + + + Sbjct: 349 MFLVEHGKI 357 >gi|260774983|ref|ZP_05883883.1| DNA recombination and repair protein RecF [Vibrio coralliilyticus ATCC BAA-450] gi|260609073|gb|EEX35232.1| DNA recombination and repair protein RecF [Vibrio coralliilyticus ATCC BAA-450] Length = 360 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 79/369 (21%), Positives = 150/369 (40%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEA+ L GR F+ + V Sbjct: 1 MPLSRLIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNDCDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF + F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R + ++ E Q P ++ L + D Sbjct: 177 YWDQEMARLAENISQWRATYVEQMTEKATEICQ-TFLPEFEIQLKYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y L + + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YQAILENNFERDQALGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG + L+D+ ++ LD +R L + + G+Q+F++ T+ + D L+E + Sbjct: 288 QHLTEMTGKQCVYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDENGR 347 Query: 364 FMRISNHQA 372 + + Sbjct: 348 MFHVEHGTI 356 >gi|229824638|ref|ZP_04450707.1| hypothetical protein GCWU000282_01985 [Catonella morbi ATCC 51271] gi|229786009|gb|EEP22123.1| hypothetical protein GCWU000282_01985 [Catonella morbi ATCC 51271] Length = 384 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 95/377 (25%), Positives = 160/377 (42%), Gaps = 18/377 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L +S FRNY + L TI G+N GKTN+LE+I LS + R +++ Sbjct: 1 MKLKTLKLSHFRNYQGIELCLGPGLTILTGENAQGKTNLLESIFLLSLAKSHRTNHDSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 AR+E + + I L + + Q+N + + Sbjct: 61 IEWDQEQ-----ARIEAVIETKNYEIPLALTLTKKGKVAQVNYLDQSKLSHFVGQFNTVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P ++ G RRRFLD + +P + ++ ++RL++ RN L + FD Sbjct: 116 FAPEDMQLIKGAPNLRRRFLDIELGQANPIYLNHLLTYQRLLKQRNSYLKQEGRGKKFDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+ + G + R+E + L + Q + +L L + Q Sbjct: 176 VFFEILTEQLCQEGAHLIQYRMEFLEKLGQIASPIHQNLSNGRDQLRLEYINGSQVYQPL 235 Query: 241 CALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 +L+E + L + R+ D TL GPHR D + DK GS G+Q+ + Sbjct: 236 -SLEERIKQLLDQASTYASRERD--QGTTLFGPHRDDFMTYVNDKKAQF-FGSQGQQRTI 291 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 ++ + LA LI G P+LLLD++ + LD+D+++ L + D I T T K + Sbjct: 292 VLSLKLAEIELIKQARGEYPVLLLDDVLSELDDDRQHILMSYIKDKVQTILTTATIKGLK 351 Query: 356 DSLNETAKFMRISNHQA 372 A+ IS Sbjct: 352 LHQLPHAEIFYISAGNI 368 >gi|310657320|ref|YP_003935041.1| DNA replication and repair protein recf [Clostridium sticklandii DSM 519] gi|308824098|emb|CBH20136.1| DNA replication and repair protein recF [Clostridium sticklandii] Length = 361 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 163/372 (43%), Gaps = 12/372 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + +S FRNY+ F + +G NG GKTN++EAI LS GR FR ++ Sbjct: 1 MLINNITLSNFRNYSKAEANFSENLNLIIGKNGQGKTNLIEAIYMLSLGRSFRTNKDKEM 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + ++ S+ G +I + + + + ++IN + I + +L + I Sbjct: 61 MMFDALNTYISSEITAMGRNYKIEIKLGKDIK-----KAVKINSIPIEKLTDLLGIINIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P ++ ERR F+DR + + P + + +++++ RN LL D + Sbjct: 116 IFSPEDLKLVREGPKERRGFMDREISQLRPNYYSLIHKYQKILVQRNNLLKNTKIDENLL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A + KI R E I+ ++ + + + KL++ + Sbjct: 176 DVYDEQLAIVSQKIMAYRKEFIDNITPIASANHYRISSGKEKLNIKYLPNITASSEIEFD 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K R D R T GPH+ D+ + D + + GS G+++ + + L+ Sbjct: 236 SSYIFNKFKTSRAEDIRRRTTTSGPHKDDIGIYLGDMDLR-SFGSQGQKRSAAISLKLSE 294 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +LI P++LLD+I + LD ++ L +++I Q F+T T+ F N+ K Sbjct: 295 IQLIFEEKNEYPVVLLDDIFSELDISRQKMLIDSLSEI--QTFVTTTEAIDF---NKEVK 349 Query: 364 FMRISNHQALCI 375 I N + + Sbjct: 350 TYLIENAKVSLL 361 >gi|332559821|ref|ZP_08414143.1| recombination protein F [Rhodobacter sphaeroides WS8N] gi|332277533|gb|EGJ22848.1| recombination protein F [Rhodobacter sphaeroides WS8N] Length = 363 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 141/370 (38%), Positives = 205/370 (55%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + R+ FD + FVG NG GKTN+LEAIS LSPGRG RRA+ ++ Sbjct: 4 LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A V G+ + +I E R VR D L + LRI W Sbjct: 64 ARRPEALGWKVAAAVTGLHSVHEIETWAEGGGARQVRI----DGKAATQVMLGRLLRIVW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR+++ + RRRFLDR+ + P H ++D+E+ MR RNRLL E D+ W Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E +MAE I R E + L + + + FP LS+ Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAVLSVAS-----------DDP 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ A +GR+ D + RTL+GPHR+DL Y K + A STGEQK +L+ + LA+A Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G AP+LLLDE++AHLDE +R ALF + +G+Q FMTGT +F +L + A+ Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 346 Query: 365 MRISNHQALC 374 + ++ Q L Sbjct: 347 IEVTEAQGLS 356 >gi|150387857|ref|YP_001317906.1| DNA replication and repair protein RecF [Alkaliphilus metalliredigens QYMF] gi|166918718|sp|A6TJ79|RECF_ALKMQ RecName: Full=DNA replication and repair protein recF gi|149947719|gb|ABR46247.1| DNA replication and repair protein RecF [Alkaliphilus metalliredigens QYMF] Length = 368 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 167/370 (45%), Gaps = 8/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + FRNY L+L + IFVG+N GKTN+LEA+ + G+ FR + ++ Sbjct: 1 MIIEGLKLINFRNYEQLQLQLHPKLNIFVGENAQGKTNVLEAVYLSAIGKSFRTSKDQEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + +V+ + +I ++L + +++N V + + EL +L I Sbjct: 61 IFVDKHQAY-VQVKVKRVVYENNIELRLNVD---KKKNIKVNQVPLLKLGELLGNLNIVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P +I ERR+F+D + I P++ + + ++++ RN+LL Sbjct: 117 FSPEDLKIIKEGPGERRKFIDGEISQIAPKYYYNLNQYNKILQQRNKLLKYHKGKKLDLE 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCA 242 Q+A +G + I R I ++ L +K +++ + K + Sbjct: 177 VWNEQLANIGASLIIYRRNFIKRIAILAKLMHRKITDGIETLEIEYKSSVLIKDHDTVDQ 236 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++ + K+L + TL+GPHR DL + + +GS G+Q+ ++ + LA Sbjct: 237 IRVGFLKELNQSADEERRRGVTLVGPHRDDLNFNINGLEVK-TYGSQGQQRTAVLSLKLA 295 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 LI G P+LLLD++ + LD ++N L + + + + T + ++ + A Sbjct: 296 ELELIKGEVGEYPVLLLDDVMSELDMKRQNDLIYHLKHVQTLVTTTMLEPLNIKNVQDKA 355 Query: 363 KFMRISNHQA 372 R+ + Sbjct: 356 -LFRVIKGEI 364 >gi|300719139|ref|YP_003743942.1| DNA replication and repair protein [Erwinia billingiae Eb661] gi|299064975|emb|CAX62095.1| DNA replication and repair protein [Erwinia billingiae Eb661] Length = 361 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 148/369 (40%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIENADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R+EG E + + D VR I+ V EL + L + Sbjct: 61 IRHEQDAF-VLHGRIEGAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F +P + RLM+ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFTAWSNLRRLMKQRNAALRQ-VSRYQQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A++ I + P KL+ + + Sbjct: 176 AWDQELVPLAEQISRWRAAYSDAIAEDINATCA-QFLPEFKLTFSFQRGWDKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EY + L + D T GPH++D + D S G+ K+++ + LA Sbjct: 229 -EYGELLERQFERDRALTYTASGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ G + L+D+ ++ LDE +R L + +Q+F++ FD +E K Sbjct: 287 EFLTRQNGRRCLYLIDDFASELDETRRQLLASRLKATHAQVFVSAISAEHVFDMTDEKGK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFHVEQGKI 355 >gi|295691866|ref|YP_003600476.1| DNA replication and repair protein recf [Lactobacillus crispatus ST1] gi|295029972|emb|CBL49451.1| DNA replication and repair protein recF [Lactobacillus crispatus ST1] Length = 375 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 155/376 (41%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + FRN L + FD+ IF+G N GKTN+LEAI FL+ R R + D+ Sbjct: 1 MYLDHFTVQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F + G + + + L + + + IN V + + L Sbjct: 61 IGFGGE-----FTNLLGHVHKSQVELDLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D+ I+ + + +++ +N L + D Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A + ++ R + + LS + + +LS+ Q+ Sbjct: 176 VFLDVLSDQLAGIAAEVVFRRFKFLKYLSHYASDAYAHISLGSEQLSIAYHPSVADIQAD 235 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + +E Y K L + + T GPHR D+ + + + S G+Q+ + + Sbjct: 236 DSTEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFKLDGQNAHL-YASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + + I + + Sbjct: 354 EIIKKPRVYHIQSGKI 369 >gi|59710618|ref|YP_203394.1| recombination protein F [Vibrio fischeri ES114] gi|75507126|sp|Q5E8Z0|RECF_VIBF1 RecName: Full=DNA replication and repair protein recF gi|59478719|gb|AAW84506.1| gap repair protein [Vibrio fischeri ES114] Length = 359 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 163/369 (44%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I++FRN + + + +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLIINDFRNITTCDIQLSSGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F R E ++ I + + D + ++I + + +L K L + Sbjct: 61 IRNDCDELF-IHGRFTTPEQF-ELPIGINKQRDGTT-EVKIGGESGQKLAQLAKVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF ++P +RL + RN LL S Sbjct: 118 IHPEGFELVTDGPKFRRAFIDWGVFHVEPAFYDAWSRVKRLTKQRNALLKTANSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L KI+ RV+ IN +S + Q P + L+ + + Sbjct: 177 YWDLELAQLSEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWDRETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T+ GP+++DL + + S G+ K+++ + LA Sbjct: 231 --YAELLKKNFERDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + +Q+F++ T + + D ++ +K Sbjct: 288 QHLTEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDDESK 347 Query: 364 FMRISNHQA 372 I + + Sbjct: 348 MFEIEHGKI 356 >gi|289422543|ref|ZP_06424386.1| DNA replication and repair protein RecF [Peptostreptococcus anaerobius 653-L] gi|289157115|gb|EFD05737.1| DNA replication and repair protein RecF [Peptostreptococcus anaerobius 653-L] Length = 371 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 176/374 (47%), Gaps = 11/374 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +RNY L + F+ + +G NG GKTNI+E+++ ++ G+ FR + ++ Sbjct: 1 MHINSLKLVNYRNYNDLSIDFNEHINLILGKNGQGKTNIVESLTLIAIGKSFRTSKDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S + + +I K+E + + +++N V ++ + +L +L + Sbjct: 61 IKFDKDSLY-----IGCSFTRNNIDKKIEIAIAKDKKGIKVNGVSVKSIQDLLGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P ++ ERR F+D+ + I PR+ + + +++ RN+LL Y D + + Sbjct: 116 FSPEDLKLIKDGPKERRSFIDKEISQIMPRYYSILTSYNKVLDERNKLLKSQYIDRNLLA 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFCA 242 +A +I + R + + LS + + QK +K+ ++ + Sbjct: 176 VYSETLANYAAEIYLIRRDFVGKLSIISSDLHQKLTSDKEVLKIRYKSQIEVTDQDDIRS 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E+ + D ++R T IGPHR D+++ D + + +GS G+Q+ + + L+ Sbjct: 236 MREKIISAHEENIDHDMLNRNTRIGPHRDDIVIYLNDIDVRL-YGSQGQQRTASISLKLS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ET 361 LI G P+L+LD++ + LD++++ L + DI Q+F+T D L + Sbjct: 295 EIELIKQEIGDYPVLILDDVFSELDQNRQKMLVEKLEDI--QMFVTTADPLHKLILGKDD 352 Query: 362 AKFMRISNHQALCI 375 I + + I Sbjct: 353 YSVFNIEAGKVVEI 366 >gi|310825639|ref|YP_003957996.1| DNA replication and repair protein RecF [Eubacterium limosum KIST612] gi|308737373|gb|ADO35033.1| DNA replication and repair protein RecF [Eubacterium limosum KIST612] Length = 371 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 165/374 (44%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +RNY L F + G N GKTN++E+I LS G + + D+ Sbjct: 1 MILTRLHLVHYRNYRDETLEFSPGINVICGQNAQGKTNLVESIHLLSRGYSHKTGTLMDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FF V+ D S L + + + +N D + L Sbjct: 61 VGFDESGFF-----VQADIVKEDTSHTLSIKMQDKKKTVLLNGKKETRRDAVLGVLTTIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P +I +RRRF++ + P + + ++ ++ RN LL E +DS+ Sbjct: 116 FEPDDLKIVKEGPEKRRRFMNNEISGFKPNYPYILKNYAKIHNQRNALLKEIKYDSTLAL 175 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 S + Q+ + G + R++ + L+ E ++ + +L L + + Q F Sbjct: 176 TLDSWDEQLVKYGSMLMRYRIDYLRRLNVKARELHRELSGGQEELVLFYQNNVLENPQEF 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L+ + +KL R+ D T GPH D+++ K +GS G+Q+ + + Sbjct: 236 SDLERIFREKLQASRQEDIARGSTTYGPHVDDIMIHLNGKDAK-KYGSQGQQRTAAISLK 294 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ + +TG P++LLD+I + LD+ ++ + I+ +Q F+T TD S + +E Sbjct: 295 LSQIEIYRESTGDYPVVLLDDILSELDDRRQRNILSILGK--TQAFITCTDPSFIEHYSE 352 Query: 361 -TAKFMRISNHQAL 373 +K ++I + + L Sbjct: 353 LPSKILKIEDGRQL 366 >gi|145597327|ref|YP_001161402.1| recombination protein F [Yersinia pestis Pestoides F] gi|145209023|gb|ABP38430.1| DNA replication and repair protein RecF [Yersinia pestis Pestoides F] Length = 425 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L A VG NG GKT++LEA+ L GR FR V Sbjct: 67 MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 126 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E A + + + D VR I+ V EL + L + Sbjct: 127 IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 182 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 183 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 241 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + + Sbjct: 242 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 294 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 295 -DYGELLARQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 352 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 353 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 412 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 413 MFRVEHGKI 421 >gi|126730158|ref|ZP_01745970.1| recombination protein F [Sagittula stellata E-37] gi|126709538|gb|EBA08592.1| recombination protein F [Sagittula stellata E-37] Length = 364 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 203/371 (54%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + + D + G NG GKTN++EA+S SPGRG RRAS D+ Sbjct: 1 MYLSHLTLSHFRSHKRVAIDVDLRPVAIWGPNGSGKTNLIEAVSLFSPGRGLRRASAQDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +EG +G +I T + R ++I+D V L + R W Sbjct: 61 ARRPESLGWKITGALEGPQGAHEI---AFTSEGGGARAVRIDDKPASQVA-LGRIARAVW 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MDR++ + RRRFLDR+ + P H + +D+E+ MR RNRLL + D W + Sbjct: 117 LIPAMDRLWIEGAEGRRRFLDRIALSFFPDHAQAALDYEKAMRERNRLLKDMVRDPHWYT 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E QMAE G +++ R+ ++ ++ + + FP L L D Sbjct: 177 ALERQMAEAGAALHVNRLAALDRIAE--AQDGAETRFPAATLDL-----VHGDGEMPGSA 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E L + RK D + RTL+GPHR+DLI + +K + A STGEQK +L+ + L++A Sbjct: 230 AELRIALEESRKRDLAAGRTLVGPHRADLIGTFAEKGVLAADCSTGEQKALLISLILSNA 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G PILLLDE++AHLD +R ALF + +G+Q +MTGT +F L + A+ Sbjct: 290 RALAADEGHPPILLLDEVAAHLDAGRRAALFDEICALGAQAWMTGTGPELFAELGDRAQA 349 Query: 365 MRISNHQALCI 375 + +S+ + + Sbjct: 350 LEVSDGPSGSV 360 >gi|188535560|ref|YP_001909357.1| recombination protein F [Erwinia tasmaniensis Et1/99] gi|226737797|sp|B2VCE1|RECF_ERWT9 RecName: Full=DNA replication and repair protein recF gi|188030602|emb|CAO98497.1| DNA replication and repair protein RecF [Erwinia tasmaniensis Et1/99] Length = 361 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R+ E + + D VR I+ V EL + L + Sbjct: 61 IRHDQDAF-VLHGRIATAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F +P + RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++A L +I+ R A+++ I + P +LS + + Sbjct: 176 AWDQELAPLAEQISQWRAAYSEAIAADISATCA-QFLPEFQLSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T GPH++D + + S G+ K+++ + LA Sbjct: 229 -HYAELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ G + L+D+ ++ LDE +R+ L + +Q+F++ FD +E K Sbjct: 287 EFLTRQNGQRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMTDEKGK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFHVEQGKI 355 >gi|108810131|ref|YP_654047.1| recombination protein F [Yersinia pestis Antiqua] gi|108814113|ref|YP_649880.1| recombination protein F [Yersinia pestis Nepal516] gi|167401621|ref|ZP_02307115.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|51591507|emb|CAH23179.1| DNA metabolism protein [Yersinia pseudotuberculosis IP 32953] gi|108777761|gb|ABG20280.1| DNA replication and repair protein RecF [Yersinia pestis Nepal516] gi|108782044|gb|ABG16102.1| DNA replication and repair protein RecF [Yersinia pestis Antiqua] gi|167049003|gb|EDR60411.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 427 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L A VG NG GKT++LEA+ L GR FR V Sbjct: 67 MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 126 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E A + + + D VR I+ V EL + L + Sbjct: 127 IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 182 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 183 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 241 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + + Sbjct: 242 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 294 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 295 -DYGELLARQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 352 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 353 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 412 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 413 MFRVEHGKI 421 >gi|83309737|ref|YP_420001.1| recombination protein F [Magnetospirillum magneticum AMB-1] gi|82944578|dbj|BAE49442.1| Recombinational DNA repair ATPase [Magnetospirillum magneticum AMB-1] Length = 394 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 143/378 (37%), Positives = 206/378 (54%), Gaps = 14/378 (3%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R ++ L +++FR Y +LRL D++ + G NG GKTNILEA+SFL PGRG RRA AD Sbjct: 14 RPAVRRLTLADFRCYRTLRLETDSRPVVLTGANGAGKTNILEALSFLVPGRGLRRAGAAD 73 Query: 64 VTRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 +TR G + S ++ A ++G G +I E +R R ++I+ + D L + Sbjct: 74 ITRHGLAAGSPWAVAATLDGPAGRVEIGTGREAGHER--RSVRIDGKPAKPGD-LAGLVS 130 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---- 177 WL P+MDR+F + RRRFLDR+VF + P H +E MR R RLL Sbjct: 131 ALWLTPAMDRLFIEGASGRRRFLDRLVFGLVPGHGAEAGAYEHAMRERTRLLRAARDGGP 190 Query: 178 -FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 D +W +++E MA G ++ +ARVE I L + FP L++ G ++G Sbjct: 191 RVDPAWMAALEEGMARHGTRVALARVESIRRLDEACRAGL--GPFPAAGLAVEGEIEGWL 248 Query: 237 D--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 S +E + L R D + +GPHRSDL+V + K + STGEQK Sbjct: 249 AGGLSPDEAEERFRGALRVARARDEAAGAATMGPHRSDLMVRHVPKDLPAGQCSTGEQKA 308 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 VLV I LA R+ + G AP+LLLDE++AHLDE +R ALF + + +Q +MTGTD + Sbjct: 309 VLVSIVLAQGRVQDQSGGRAPLLLLDEVAAHLDEVRRAALFDELCALKAQSWMTGTDAML 368 Query: 355 FDSLNETAKFMRISNHQA 372 F E A+F R+++ Sbjct: 369 FAGFGERAQFFRVTDATV 386 >gi|227328543|ref|ZP_03832567.1| recombination protein F [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 361 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F R++G E + + + D VR I+ V EL + L I Sbjct: 61 IRHDQPEF-VLHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL+R RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFAAWSNMKRLLRQRNAALRQ-VSHYGQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R + A+++ I + P LS + + Sbjct: 176 AWDQELVPLAERISEWRAQYSAAIANDIAATC-TQFLPEFSLSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D M T +GPH++D + A+ S G+ K+++ + LA Sbjct: 229 -EYAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ G + L+D+ ++ LD +R L + +Q+F++ D + E K Sbjct: 287 EFLTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|227877544|ref|ZP_03995604.1| recombination protein F [Lactobacillus crispatus JV-V01] gi|256843828|ref|ZP_05549315.1| recombination protein F [Lactobacillus crispatus 125-2-CHN] gi|256849617|ref|ZP_05555049.1| recombination protein F [Lactobacillus crispatus MV-1A-US] gi|293380894|ref|ZP_06626930.1| DNA replication and repair protein RecF [Lactobacillus crispatus 214-1] gi|227862843|gb|EEJ70302.1| recombination protein F [Lactobacillus crispatus JV-V01] gi|256613733|gb|EEU18935.1| recombination protein F [Lactobacillus crispatus 125-2-CHN] gi|256713733|gb|EEU28722.1| recombination protein F [Lactobacillus crispatus MV-1A-US] gi|290922567|gb|EFD99533.1| DNA replication and repair protein RecF [Lactobacillus crispatus 214-1] Length = 375 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 155/376 (41%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + FRN L + FD+ IF+G N GKTN+LEAI FL+ R R + D+ Sbjct: 1 MYLDHFTVQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F + G + + + L + + + IN V + + L Sbjct: 61 IGFGGE-----FTNLLGHVHKSQVDLDLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D+ I+ + + +++ +N L + D Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A + ++ R + + LS + + +LS+ Q+ Sbjct: 176 VFLDVLSDQLAGIAAEVVFRRFKFLKYLSHYASDAYAHISLGSEQLSIAYHPSVADIQAD 235 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + +E Y K L + + T GPHR D+ + + + S G+Q+ + + Sbjct: 236 DSTEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFKLDGQNAHL-YASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + + I + + Sbjct: 354 EIIKKPRVYHIQSGKI 369 >gi|28896787|ref|NP_796392.1| recombination protein F [Vibrio parahaemolyticus RIMD 2210633] gi|153839066|ref|ZP_01991733.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AQ3810] gi|260363486|ref|ZP_05776319.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus K5030] gi|260876545|ref|ZP_05888900.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AN-5034] gi|260897306|ref|ZP_05905802.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus Peru-466] gi|260901414|ref|ZP_05909809.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AQ4037] gi|32129958|sp|Q87TQ5|RECF_VIBPA RecName: Full=DNA replication and repair protein recF gi|28804995|dbj|BAC58276.1| RecF protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747449|gb|EDM58403.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AQ3810] gi|308087832|gb|EFO37527.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus Peru-466] gi|308090410|gb|EFO40105.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AN-5034] gi|308107203|gb|EFO44743.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus AQ4037] gi|308113567|gb|EFO51107.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus K5030] Length = 359 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 153/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + V Sbjct: 1 MPLSRLIIQQFRNIKACDIQLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF +P F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTASSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R I + + E + + P ++ L + D Sbjct: 177 YWDQEMARLAENISQWRSLYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YQEILEKNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++ K Sbjct: 288 QHLTAMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITENQIADMLDDNGK 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 LFHVEHGRI 356 >gi|310765872|gb|ADP10822.1| DNA replication and repair protein recF [Erwinia sp. Ejp617] Length = 397 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 147/369 (39%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 37 MALTRLLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 96 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R+ E + D VR I+ V EL + L + Sbjct: 97 IRHDQDAF-VLHGRIRAAEREISAGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 152 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F +P + RL++ RN L + Sbjct: 153 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIR 211 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++A L +I+ R A+++ I + P +LS + + Sbjct: 212 AWDQELAPLAEQISQWRAAYSKAIAADINATCA-QFLPEFQLSFSFQRGWDKES------ 264 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D T GPH++D + + S G+ K+++ + LA Sbjct: 265 -DYAGLLERNFERDRAFTYTASGPHKADFRIRAQGTPVE-DLLSRGQLKLLMCALRLAQG 322 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ G + L+D+ ++ LDE +R+ L + +Q+F++ FD +E K Sbjct: 323 EFLTRQNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMTDEKGK 382 Query: 364 FMRISNHQA 372 + + Sbjct: 383 MFHVEQGKI 391 >gi|163849460|ref|YP_001637503.1| DNA replication and repair protein RecF [Methylobacterium extorquens PA1] gi|254558656|ref|YP_003065751.1| RecF protein [Methylobacterium extorquens DM4] gi|163661065|gb|ABY28432.1| DNA replication and repair protein RecF [Methylobacterium extorquens PA1] gi|254265934|emb|CAX21683.1| putative RecF protein [Methylobacterium extorquens DM4] Length = 384 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 142/377 (37%), Positives = 203/377 (53%), Gaps = 4/377 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + ++ L +FRN+ L L + VG+NG GKTNILEA+S PGRG RRA Sbjct: 4 LPGGPRLTRLIARDFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRAD 63 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNK 118 A + R+G P F+ A +E E E D R R +I+ ++ Sbjct: 64 LATMARVGGPGGFAVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSE 123 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 LRI WL P D +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E Sbjct: 124 FLRIVWLTPDFDGLFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPD 183 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD 237 D W ++E ++AELGV + +AR E + L LI E FP L L G LD Sbjct: 184 DGRWLDAVEREVAELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLDDLVA 243 Query: 238 Q-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ + + L GR D + RTLIGP +DL+V + K + A STGEQK +L Sbjct: 244 VWPALEAEDRFRRALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALL 303 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +G+ LAHARL+ +G AP++LLDE++AHLD +R LF + + Q++MTG D ++F Sbjct: 304 IGLVLAHARLVRAMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFA 363 Query: 357 SLNETAKFMRISNHQAL 373 L A + +++ + + Sbjct: 364 ELEGRADLIGVADGRLV 380 >gi|149191878|ref|ZP_01870112.1| recombination protein F [Vibrio shilonii AK1] gi|148834270|gb|EDL51273.1| recombination protein F [Vibrio shilonii AK1] Length = 360 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 151/369 (40%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN + + +G NG GKT++LEAI L GR F+ + V Sbjct: 1 MPLTRLIVQQFRNIKACDIELSTGFNFIIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + + I + V+ I + + +L K L + Sbjct: 61 IQNDCQELFVHGRFLNSDQFEIPVGINKQRDGSTEVK---IGGQSGQKLAQLAKVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF +P F+RL + RN LL S Sbjct: 118 IHPEGFELLTDGPKFRRAFIDWGVFHSEPGFHEAWGRFKRLSKQRNALLKTATSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +A+L +I+ R + + L E Q P ++ L + + D Sbjct: 177 YWDRDLAQLAEQIDDWRRCYVEQMQPLAEEMCQS-FLPEFEIKLGYYRGWEKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T GP+++DL + + + S G+ K+++ + LA Sbjct: 231 --YAELLERNFERDQSLGYTFSGPNKADLRIKVNNTPVEDVL-SRGQLKLMMCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + +Q+F++ T V D ++E K Sbjct: 288 QHLAELTGKQCIYLIDDFASELDSLRRKRLADYLKQTNAQVFVSSITQSQVADMIDENGK 347 Query: 364 FMRISNHQA 372 + + Sbjct: 348 MFHVEHGTI 356 >gi|309795751|ref|ZP_07690166.1| recombination protein F [Escherichia coli MS 145-7] gi|308120630|gb|EFO57892.1| recombination protein F [Escherichia coli MS 145-7] Length = 357 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHDQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|298290589|ref|YP_003692528.1| DNA replication and repair protein RecF [Starkeya novella DSM 506] gi|296927100|gb|ADH87909.1| DNA replication and repair protein RecF [Starkeya novella DSM 506] Length = 385 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 138/368 (37%), Positives = 202/368 (54%), Gaps = 7/368 (1%) Query: 14 EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG----S 69 +FR+Y + + VG NG GKTN+LEAIS L+PGRG RRAS G Sbjct: 13 DFRSYHHADIRAGDGPVVLVGPNGAGKTNLLEAISLLAPGRGLRRASLDQFAARGPEGTQ 72 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWLVPS 128 + ++ A VEG G + LE + R +I+ + H+R+ WL P Sbjct: 73 AAGWAVSAVVEGAYGEVTLGTGLEADAGEARSRRCRIDGEPVGSAAAFADHVRVVWLTPD 132 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 MD +F+G ERRRFLDR+V A+D H R+ ER +R RNRLL E D + ++E Sbjct: 133 MDGLFTGPPSERRRFLDRLVLAVDAEHGARVNALERALRSRNRLLEEPSTDPRYLDAVEH 192 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCAL-KEE 246 ++A L V + AR+E + L++ I + + FP ++L G ++ + + +++ Sbjct: 193 ELAALAVAVAAARLETVRRLAANIAQSRDDTSLFPWASVALEGEVERALAREPATVVEDQ 252 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Y L R D + RTL GPH +DL+V + KAI A GSTGEQK +L+G+ LAHARL Sbjct: 253 YRLALRASRPRDRAAGRTLEGPHLTDLLVGHGPKAIPAAQGSTGEQKALLIGLALAHARL 312 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + G AP++LLD++ A+LD +R ALF + +GSQ++MTG D S F +L A+ Sbjct: 313 VGEMAGMAPVMLLDDVVAYLDPARRAALFEALEALGSQVWMTGADPSAFVALGARAERFE 372 Query: 367 ISNHQALC 374 + Q L Sbjct: 373 VRPGQVLS 380 >gi|209693645|ref|YP_002261573.1| recombination protein F [Aliivibrio salmonicida LFI1238] gi|226737766|sp|B6EP48|RECF_ALISL RecName: Full=DNA replication and repair protein recF gi|208007596|emb|CAQ77696.1| DNA replication and repair protein RecF [Aliivibrio salmonicida LFI1238] Length = 359 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 162/369 (43%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I++FRN + + +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLIINDFRNIETCDIQLSTGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F R E ++ I + + D + ++I + + +L K L + Sbjct: 61 IRNSCDELF-IHGRFTTPEQF-ELPIGINKQRDGTT-EVKIGGESGQKLAQLAKVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF ++P +RL + RN LL S Sbjct: 118 IHPEGFELVTDGPKFRRAFIDWGVFHVEPAFYEAWSRVKRLTKQRNALLKTAQSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L KI+ RV+ IN +S + Q P + L+ + + + Sbjct: 177 YWDLELANLAEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWERETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T+ GP+++DL + + S G+ K+++ + LA Sbjct: 231 --YAELLKRNFERDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + +Q+F++ T + + D +E +K Sbjct: 288 QHLTEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDEESK 347 Query: 364 FMRISNHQA 372 I + + Sbjct: 348 MFEIEHGKI 356 >gi|259910293|ref|YP_002650649.1| recombination protein F [Erwinia pyrifoliae Ep1/96] gi|224965915|emb|CAX57448.1| DNA replication and repair protein RecF [Erwinia pyrifoliae Ep1/96] Length = 361 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 149/369 (40%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R+ G E + + D VR I+ V EL + L + Sbjct: 61 IRHEQDAF-VLHGRIAGAERETSVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F +P + RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++A L +I+ R A+++ I + P +LS + + Sbjct: 176 AWDQELAPLAEQISQWRAAYSRAIAADINATCA-QFLPEFQLSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D T GPH++D + + S G+ K+++ + LA Sbjct: 229 -DYAGLLERNFERDRALTYTASGPHKADFRIRAQGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ G + L+D+ ++ LDE +R+ L + +Q+F++ FD +E K Sbjct: 287 EFLTRQNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMADEKGK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFHVEQGKI 355 >gi|301644372|ref|ZP_07244373.1| recombination protein F [Escherichia coli MS 146-1] gi|301077313|gb|EFK92119.1| recombination protein F [Escherichia coli MS 146-1] Length = 357 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTCYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|221640843|ref|YP_002527105.1| recombination protein F [Rhodobacter sphaeroides KD131] gi|221161624|gb|ACM02604.1| DNA replication and repair protein recF [Rhodobacter sphaeroides KD131] Length = 363 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 140/370 (37%), Positives = 203/370 (54%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + R+ FD + FVG NG GKTN+LEAIS LSPGRG RRA+ ++ Sbjct: 4 LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A V G+ +I E R VR D L + LRI W Sbjct: 64 ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRV----DGKAATQVMLGRLLRIVW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR+++ + RRRFLDR+ + P H ++D+E+ MR RNRLL E D+ W Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E +MAE I R E + L + + + FP LS+ Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAMLSVAS-----------DDP 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ +GR+ D + RTL+GPHR+DL Y K + A STGEQK +L+ + LA+A Sbjct: 227 EDLGAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G AP+LLLDE++AHLDE +R ALF + +G+Q FMTGT +F +L + A+ Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 346 Query: 365 MRISNHQALC 374 + ++ Q L Sbjct: 347 IEVTEAQGLS 356 >gi|323465561|gb|ADX69248.1| DNA replication and repair protein recF [Lactobacillus helveticus H10] Length = 375 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 154/376 (40%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + FRN L + FD IF+G N GKTN+LEAI FL+ R R S ++ Sbjct: 1 MYLDHFVVQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + G + + + L + + + IN V + + L Sbjct: 61 IGFGGE-----YTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D+ I+ + + +++ +N L + D Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A + ++ R + + LS + + KL++ ++ Sbjct: 176 VFLDVLSDQLAGIAAEVIFRRFKFLRYLSHYASDAYAHISLGGEKLAIAYHPSVSTIEAD 235 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++E Y K L + ++ T GPHR D+ K + + S G+Q+ + + Sbjct: 236 DTVEEIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T T Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTYLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + + I + + Sbjct: 354 EIIKKPRVYHIQSGKI 369 >gi|290959001|ref|YP_003490183.1| DNA replication protein [Streptomyces scabiei 87.22] gi|260648527|emb|CBG71638.1| DNA replication protein [Streptomyces scabiei 87.22] Length = 374 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 99/380 (26%), Positives = 167/380 (43%), Gaps = 21/380 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE ++ R +R D L +R Sbjct: 61 VRMGAD---RAVVRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233 D S + +A +G + R++++ A+ L + ++ + L Sbjct: 177 RTMDLSTLDVWDQHLARVGADLLAQRLDLVAAIQPLADKAYEQLAPGGGPVGLEYRPSSP 236 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G + L E+ L + RK + TL+GPHR D+ + + + S GE Sbjct: 237 GLVGHAREELYEQLTAALTESRKQEIERGVTLVGPHRDDVTLKL-GQLPAKGYASHGESW 295 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDK 352 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 296 SYALALRLASYDLLRAE-GNEPVLILDDVFAELDSRRRERLAELVA-PGEQVLVTAAVDD 353 Query: 353 SVFDSLNETAKFMRISNHQA 372 V D L T +S+ Sbjct: 354 DVPDVL--TGARYVVSDGTV 371 >gi|170767070|ref|ZP_02901523.1| DNA replication and repair protein RecF [Escherichia albertii TW07627] gi|170124508|gb|EDS93439.1| DNA replication and repair protein RecF [Escherichia albertii TW07627] Length = 357 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQVGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|312174327|emb|CBX82580.1| DNA replication and repair protein recF [Erwinia amylovora ATCC BAA-2158] Length = 361 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 146/369 (39%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIEDADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R+ E + + D VR I+ V EL + L + Sbjct: 61 IRHDRDAF-VLHGRIAATEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F +P + RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFNAWSNLRRLLKQRNAALRQ-VSRYQQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++A L +I+ R A+++ I + P +LS + D Sbjct: 176 AWDQELAPLAEQISQWRAAYSEAIAADINATCA-QFLPEFQLSFSFQRGWDKDSG----- 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T GPH++D + + S G+ K+++ + LA Sbjct: 230 --YAELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ G + L+D+ ++ LDE +R L + +Q+F++ FD +E K Sbjct: 287 EFLTRQNGRRCLYLIDDFASELDETRRQLLAAHLKATQAQVFVSAIAAEHVFDMADEKGK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFHVEQGKI 355 >gi|332345691|gb|AEE59025.1| DNA replication and repair protein RecF [Escherichia coli UMNK88] Length = 357 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTHYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|218702549|ref|YP_002410178.1| recombination protein F [Escherichia coli IAI39] gi|226737791|sp|B7NR02|RECF_ECO7I RecName: Full=DNA replication and repair protein recF gi|218372535|emb|CAR20410.1| gap repair protein [Escherichia coli IAI39] Length = 357 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|15804294|ref|NP_290333.1| recombination protein F [Escherichia coli O157:H7 EDL933] gi|15833889|ref|NP_312662.1| recombination protein F [Escherichia coli O157:H7 str. Sakai] gi|16131568|ref|NP_418155.1| gap repair protein [Escherichia coli str. K-12 substr. MG1655] gi|26250441|ref|NP_756481.1| recombination protein F [Escherichia coli CFT073] gi|74314014|ref|YP_312433.1| recombination protein F [Shigella sonnei Ss046] gi|89110313|ref|AP_004093.1| gap repair protein [Escherichia coli str. K-12 substr. W3110] gi|91213222|ref|YP_543208.1| recombination protein F [Escherichia coli UTI89] gi|117625976|ref|YP_859299.1| recombination protein F [Escherichia coli APEC O1] gi|157155989|ref|YP_001465185.1| recombination protein F [Escherichia coli E24377A] gi|157163180|ref|YP_001460498.1| recombination protein F [Escherichia coli HS] gi|168748584|ref|ZP_02773606.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4113] gi|168753589|ref|ZP_02778596.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4401] gi|168759886|ref|ZP_02784893.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4501] gi|168766187|ref|ZP_02791194.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4486] gi|168772265|ref|ZP_02797272.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4196] gi|168779922|ref|ZP_02804929.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4076] gi|168798735|ref|ZP_02823742.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC508] gi|170018064|ref|YP_001723018.1| recombination protein F [Escherichia coli ATCC 8739] gi|170083202|ref|YP_001732522.1| gap repair protein [Escherichia coli str. K-12 substr. DH10B] gi|170684195|ref|YP_001746028.1| recombination protein F [Escherichia coli SMS-3-5] gi|191165795|ref|ZP_03027633.1| DNA replication and repair protein RecF [Escherichia coli B7A] gi|193069194|ref|ZP_03050151.1| DNA replication and repair protein RecF [Escherichia coli E110019] gi|194435781|ref|ZP_03067884.1| DNA replication and repair protein RecF [Escherichia coli 101-1] gi|195936321|ref|ZP_03081703.1| recombination protein F [Escherichia coli O157:H7 str. EC4024] gi|208808901|ref|ZP_03251238.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4206] gi|208814025|ref|ZP_03255354.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4045] gi|208819308|ref|ZP_03259628.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4042] gi|209397495|ref|YP_002273226.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4115] gi|215489040|ref|YP_002331471.1| recombination protein F [Escherichia coli O127:H6 str. E2348/69] gi|217324896|ref|ZP_03440980.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. TW14588] gi|218556265|ref|YP_002389179.1| recombination protein F [Escherichia coli IAI1] gi|218560775|ref|YP_002393688.1| recombination protein F [Escherichia coli S88] gi|218691988|ref|YP_002400200.1| recombination protein F [Escherichia coli ED1a] gi|218697422|ref|YP_002405089.1| recombination protein F [Escherichia coli 55989] gi|218707346|ref|YP_002414865.1| recombination protein F [Escherichia coli UMN026] gi|227883921|ref|ZP_04001726.1| recombination protein F [Escherichia coli 83972] gi|237703500|ref|ZP_04533981.1| recombination protein F [Escherichia sp. 3_2_53FAA] gi|238902790|ref|YP_002928586.1| gap repair protein [Escherichia coli BW2952] gi|253771438|ref|YP_003034269.1| recombination protein F [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038917|ref|ZP_04872969.1| ssDNA and dsDNA binding protein [Escherichia sp. 1_1_43] gi|254163651|ref|YP_003046759.1| recombination protein F [Escherichia coli B str. REL606] gi|254795703|ref|YP_003080540.1| recombination protein F [Escherichia coli O157:H7 str. TW14359] gi|256025569|ref|ZP_05439434.1| recombination protein F [Escherichia sp. 4_1_40B] gi|260857889|ref|YP_003231780.1| gap repair protein RecF [Escherichia coli O26:H11 str. 11368] gi|260870431|ref|YP_003236833.1| gap repair protein RecF [Escherichia coli O111:H- str. 11128] gi|261225853|ref|ZP_05940134.1| gap repair protein [Escherichia coli O157:H7 str. FRIK2000] gi|261258898|ref|ZP_05951431.1| gap repair protein RecF [Escherichia coli O157:H7 str. FRIK966] gi|291285119|ref|YP_003501937.1| DNA replication and repair protein recF [Escherichia coli O55:H7 str. CB9615] gi|293407340|ref|ZP_06651262.1| DNA replication and repair protein recF [Escherichia coli FVEC1412] gi|293413154|ref|ZP_06655820.1| conserved hypothetical protein [Escherichia coli B354] gi|293417173|ref|ZP_06659800.1| DNA replication and repair protein recF [Escherichia coli B185] gi|293464024|ref|ZP_06664438.1| DNA replication and repair protein recF [Escherichia coli B088] gi|297518855|ref|ZP_06937241.1| recombination protein F [Escherichia coli OP50] gi|298383081|ref|ZP_06992676.1| DNA replication and repair protein recF [Escherichia coli FVEC1302] gi|300815053|ref|ZP_07095278.1| recombination protein F [Escherichia coli MS 107-1] gi|300824315|ref|ZP_07104431.1| recombination protein F [Escherichia coli MS 119-7] gi|300896029|ref|ZP_07114590.1| recombination protein F [Escherichia coli MS 198-1] gi|300903025|ref|ZP_07120967.1| recombination protein F [Escherichia coli MS 84-1] gi|300917470|ref|ZP_07134130.1| recombination protein F [Escherichia coli MS 115-1] gi|300925524|ref|ZP_07141399.1| recombination protein F [Escherichia coli MS 182-1] gi|300932331|ref|ZP_07147599.1| recombination protein F [Escherichia coli MS 187-1] gi|300940885|ref|ZP_07155412.1| recombination protein F [Escherichia coli MS 21-1] gi|300947539|ref|ZP_07161716.1| recombination protein F [Escherichia coli MS 116-1] gi|300956294|ref|ZP_07168596.1| recombination protein F [Escherichia coli MS 175-1] gi|300984542|ref|ZP_07177032.1| recombination protein F [Escherichia coli MS 45-1] gi|301020911|ref|ZP_07184966.1| recombination protein F [Escherichia coli MS 69-1] gi|301028493|ref|ZP_07191733.1| recombination protein F [Escherichia coli MS 196-1] gi|301047518|ref|ZP_07194594.1| recombination protein F [Escherichia coli MS 185-1] gi|301305954|ref|ZP_07212036.1| recombination protein F [Escherichia coli MS 124-1] gi|301325008|ref|ZP_07218558.1| recombination protein F [Escherichia coli MS 78-1] gi|306815947|ref|ZP_07450085.1| recombination protein F [Escherichia coli NC101] gi|307140400|ref|ZP_07499756.1| recombination protein F [Escherichia coli H736] gi|307313231|ref|ZP_07592856.1| DNA replication and repair protein RecF [Escherichia coli W] gi|312972008|ref|ZP_07786182.1| DNA replication and repair protein recF [Escherichia coli 1827-70] gi|331644424|ref|ZP_08345553.1| DNA replication and repair protein RecF [Escherichia coli H736] gi|331649526|ref|ZP_08350612.1| DNA replication and repair protein RecF [Escherichia coli M605] gi|331655360|ref|ZP_08356359.1| DNA replication and repair protein RecF [Escherichia coli M718] gi|331660042|ref|ZP_08360980.1| DNA replication and repair protein RecF [Escherichia coli TA206] gi|331665350|ref|ZP_08366251.1| DNA replication and repair protein RecF [Escherichia coli TA143] gi|331675190|ref|ZP_08375943.1| DNA replication and repair protein RecF [Escherichia coli TA280] gi|331679798|ref|ZP_08380468.1| DNA replication and repair protein RecF [Escherichia coli H591] gi|331685424|ref|ZP_08386010.1| DNA replication and repair protein RecF [Escherichia coli H299] gi|67471979|sp|P0A7H0|RECF_ECOLI RecName: Full=DNA replication and repair protein recF gi|67471980|sp|P0A7H1|RECF_ECOL6 RecName: Full=DNA replication and repair protein recF gi|67471981|sp|P0A7H2|RECF_ECO57 RecName: Full=DNA replication and repair protein recF gi|97180964|sp|Q3YWB4|RECF_SHISS RecName: Full=DNA replication and repair protein recF gi|122421840|sp|Q1R4N7|RECF_ECOUT RecName: Full=DNA replication and repair protein recF gi|166220709|sp|A1AHN5|RECF_ECOK1 RecName: Full=DNA replication and repair protein recF gi|166918721|sp|A7ZTQ6|RECF_ECO24 RecName: Full=DNA replication and repair protein recF gi|166918722|sp|A8A6G1|RECF_ECOHS RecName: Full=DNA replication and repair protein recF gi|189039623|sp|B1IYP4|RECF_ECOLC RecName: Full=DNA replication and repair protein recF gi|226737789|sp|B7MGC1|RECF_ECO45 RecName: Full=DNA replication and repair protein recF gi|226737790|sp|B5YXA2|RECF_ECO5E RecName: Full=DNA replication and repair protein recF gi|226737792|sp|B7M4I9|RECF_ECO8A RecName: Full=DNA replication and repair protein recF gi|226737793|sp|B1X9S9|RECF_ECODH RecName: Full=DNA replication and repair protein recF gi|226737794|sp|B7NF17|RECF_ECOLU RecName: Full=DNA replication and repair protein recF gi|226737796|sp|B1LL25|RECF_ECOSM RecName: Full=DNA replication and repair protein recF gi|254790475|sp|B7UMG7|RECF_ECO27 RecName: Full=DNA replication and repair protein recF gi|254790476|sp|B7L842|RECF_ECO55 RecName: Full=DNA replication and repair protein recF gi|254790477|sp|B7N204|RECF_ECO81 RecName: Full=DNA replication and repair protein recF gi|259563362|sp|C4ZYX7|RECF_ECOBW RecName: Full=DNA replication and repair protein recF gi|12518539|gb|AAG58897.1|AE005601_3 ssDNA and dsDNA binding, ATP binding [Escherichia coli O157:H7 str. EDL933] gi|26110871|gb|AAN83055.1|AE016769_170 DNA replication and repair protein recF [Escherichia coli CFT073] gi|41645|emb|CAA27870.1| unnamed protein product [Escherichia coli K-12] gi|147539|gb|AAA24511.1| RecF [Escherichia coli] gi|1790135|gb|AAC76723.1| gap repair protein [Escherichia coli str. K-12 substr. MG1655] gi|13364110|dbj|BAB38058.1| DNA repair and genetic recombination protein RecF [Escherichia coli O157:H7 str. Sakai] gi|73857491|gb|AAZ90198.1| ssDNA and dsDNA binding protein [Shigella sonnei Ss046] gi|85676344|dbj|BAE77594.1| gap repair protein [Escherichia coli str. K12 substr. W3110] gi|91074796|gb|ABE09677.1| ssDNA and dsDNA binding, ATP binding [Escherichia coli UTI89] gi|115515100|gb|ABJ03175.1| recombination protein F [Escherichia coli APEC O1] gi|157068860|gb|ABV08115.1| DNA replication and repair protein RecF [Escherichia coli HS] gi|157078019|gb|ABV17727.1| DNA replication and repair protein RecF [Escherichia coli E24377A] gi|169752992|gb|ACA75691.1| DNA replication and repair protein RecF [Escherichia coli ATCC 8739] gi|169891037|gb|ACB04744.1| gap repair protein [Escherichia coli str. K-12 substr. DH10B] gi|170521913|gb|ACB20091.1| DNA replication and repair protein RecF [Escherichia coli SMS-3-5] gi|187771421|gb|EDU35265.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4196] gi|188016945|gb|EDU55067.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4113] gi|189002585|gb|EDU71571.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4076] gi|189358910|gb|EDU77329.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4401] gi|189364573|gb|EDU82992.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4486] gi|189369691|gb|EDU88107.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4501] gi|189378816|gb|EDU97232.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC508] gi|190904119|gb|EDV63830.1| DNA replication and repair protein RecF [Escherichia coli B7A] gi|192957518|gb|EDV87964.1| DNA replication and repair protein RecF [Escherichia coli E110019] gi|194425324|gb|EDX41308.1| DNA replication and repair protein RecF [Escherichia coli 101-1] gi|208728702|gb|EDZ78303.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4206] gi|208735302|gb|EDZ83989.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4045] gi|208739431|gb|EDZ87113.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4042] gi|209158895|gb|ACI36328.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. EC4115] gi|209754128|gb|ACI75371.1| DNA polymerase III beta-subunit [Escherichia coli] gi|209754130|gb|ACI75372.1| DNA polymerase III beta-subunit [Escherichia coli] gi|209754132|gb|ACI75373.1| DNA polymerase III beta-subunit [Escherichia coli] gi|209754134|gb|ACI75374.1| DNA polymerase III beta-subunit [Escherichia coli] gi|209754136|gb|ACI75375.1| DNA polymerase III beta-subunit [Escherichia coli] gi|215267112|emb|CAS11559.1| gap repair protein [Escherichia coli O127:H6 str. E2348/69] gi|217321117|gb|EEC29541.1| DNA replication and repair protein RecF [Escherichia coli O157:H7 str. TW14588] gi|218354154|emb|CAV00754.1| gap repair protein [Escherichia coli 55989] gi|218363034|emb|CAR00673.1| gap repair protein [Escherichia coli IAI1] gi|218367544|emb|CAR05329.1| gap repair protein [Escherichia coli S88] gi|218429552|emb|CAR10375.1| gap repair protein [Escherichia coli ED1a] gi|218434443|emb|CAR15371.1| gap repair protein [Escherichia coli UMN026] gi|222035414|emb|CAP78159.1| DNA replication and repair protein recF [Escherichia coli LF82] gi|226838882|gb|EEH70909.1| ssDNA and dsDNA binding protein [Escherichia sp. 1_1_43] gi|226902764|gb|EEH89023.1| recombination protein F [Escherichia sp. 3_2_53FAA] gi|227839199|gb|EEJ49665.1| recombination protein F [Escherichia coli 83972] gi|238861285|gb|ACR63283.1| gap repair protein [Escherichia coli BW2952] gi|242379239|emb|CAQ34044.1| ssDNA and dsDNA binding, ATP binding, subunit of RecFOR complex [Escherichia coli BL21(DE3)] gi|253322482|gb|ACT27084.1| DNA replication and repair protein RecF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975552|gb|ACT41223.1| recombination protein F [Escherichia coli B str. REL606] gi|253979708|gb|ACT45378.1| recombination protein F [Escherichia coli BL21(DE3)] gi|254595103|gb|ACT74464.1| gap repair protein [Escherichia coli O157:H7 str. TW14359] gi|257756538|dbj|BAI28040.1| gap repair protein RecF [Escherichia coli O26:H11 str. 11368] gi|257766787|dbj|BAI38282.1| gap repair protein RecF [Escherichia coli O111:H- str. 11128] gi|260447282|gb|ACX37704.1| DNA replication and repair protein RecF [Escherichia coli DH1] gi|281180754|dbj|BAI57084.1| DNA replication and repair protein RecF [Escherichia coli SE15] gi|284923783|emb|CBG36881.1| DNA replication and repair protein [Escherichia coli 042] gi|290764992|gb|ADD58953.1| DNA replication and repair protein recF [Escherichia coli O55:H7 str. CB9615] gi|291321656|gb|EFE61092.1| DNA replication and repair protein recF [Escherichia coli B088] gi|291425631|gb|EFE98667.1| DNA replication and repair protein recF [Escherichia coli FVEC1412] gi|291431204|gb|EFF04197.1| DNA replication and repair protein recF [Escherichia coli B185] gi|291468287|gb|EFF10782.1| conserved hypothetical protein [Escherichia coli B354] gi|294492502|gb|ADE91258.1| DNA replication and repair protein RecF [Escherichia coli IHE3034] gi|298276917|gb|EFI18435.1| DNA replication and repair protein recF [Escherichia coli FVEC1302] gi|299878455|gb|EFI86666.1| recombination protein F [Escherichia coli MS 196-1] gi|300300578|gb|EFJ56963.1| recombination protein F [Escherichia coli MS 185-1] gi|300316881|gb|EFJ66665.1| recombination protein F [Escherichia coli MS 175-1] gi|300360089|gb|EFJ75959.1| recombination protein F [Escherichia coli MS 198-1] gi|300398378|gb|EFJ81916.1| recombination protein F [Escherichia coli MS 69-1] gi|300404931|gb|EFJ88469.1| recombination protein F [Escherichia coli MS 84-1] gi|300408375|gb|EFJ91913.1| recombination protein F [Escherichia coli MS 45-1] gi|300415274|gb|EFJ98584.1| recombination protein F [Escherichia coli MS 115-1] gi|300418364|gb|EFK01675.1| recombination protein F [Escherichia coli MS 182-1] gi|300452876|gb|EFK16496.1| recombination protein F [Escherichia coli MS 116-1] gi|300454366|gb|EFK17859.1| recombination protein F [Escherichia coli MS 21-1] gi|300459917|gb|EFK23410.1| recombination protein F [Escherichia coli MS 187-1] gi|300523202|gb|EFK44271.1| recombination protein F [Escherichia coli MS 119-7] gi|300531945|gb|EFK53007.1| recombination protein F [Escherichia coli MS 107-1] gi|300838805|gb|EFK66565.1| recombination protein F [Escherichia coli MS 124-1] gi|300848102|gb|EFK75862.1| recombination protein F [Escherichia coli MS 78-1] gi|305850343|gb|EFM50800.1| recombination protein F [Escherichia coli NC101] gi|306906914|gb|EFN37423.1| DNA replication and repair protein RecF [Escherichia coli W] gi|307555840|gb|ADN48615.1| DNA replication and repair protein RecF [Escherichia coli ABU 83972] gi|307628776|gb|ADN73080.1| recombination protein F [Escherichia coli UM146] gi|309704147|emb|CBJ03494.1| DNA replication and repair protein [Escherichia coli ETEC H10407] gi|310334385|gb|EFQ00590.1| DNA replication and repair protein recF [Escherichia coli 1827-70] gi|312948267|gb|ADR29094.1| recombination protein F [Escherichia coli O83:H1 str. NRG 857C] gi|315063006|gb|ADT77333.1| gap repair protein [Escherichia coli W] gi|315138284|dbj|BAJ45443.1| DNA replication and repair protein recF [Escherichia coli DH1] gi|315254613|gb|EFU34581.1| recombination protein F [Escherichia coli MS 85-1] gi|315285495|gb|EFU44940.1| recombination protein F [Escherichia coli MS 110-3] gi|315292858|gb|EFU52210.1| recombination protein F [Escherichia coli MS 153-1] gi|315296898|gb|EFU56186.1| recombination protein F [Escherichia coli MS 16-3] gi|315618594|gb|EFU99180.1| DNA replication and repair protein recF [Escherichia coli 3431] gi|320191200|gb|EFW65850.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7 str. EC1212] gi|320193754|gb|EFW68387.1| DNA recombination and repair protein RecF [Escherichia coli WV_060327] gi|320201272|gb|EFW75853.1| DNA recombination and repair protein RecF [Escherichia coli EC4100B] gi|320639425|gb|EFX09040.1| recombination protein F [Escherichia coli O157:H7 str. G5101] gi|320644868|gb|EFX13904.1| recombination protein F [Escherichia coli O157:H- str. 493-89] gi|320650132|gb|EFX18628.1| recombination protein F [Escherichia coli O157:H- str. H 2687] gi|320655480|gb|EFX23415.1| recombination protein F [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661106|gb|EFX28542.1| recombination protein F [Escherichia coli O55:H7 str. USDA 5905] gi|320666232|gb|EFX33238.1| recombination protein F [Escherichia coli O157:H7 str. LSU-61] gi|323155376|gb|EFZ41559.1| DNA replication and repair protein recF [Escherichia coli EPECa14] gi|323164688|gb|EFZ50483.1| DNA replication and repair protein recF [Shigella sonnei 53G] gi|323173318|gb|EFZ58947.1| DNA replication and repair protein recF [Escherichia coli LT-68] gi|323177712|gb|EFZ63296.1| DNA replication and repair protein recF [Escherichia coli 1180] gi|323182495|gb|EFZ67899.1| DNA replication and repair protein recF [Escherichia coli 1357] gi|323189565|gb|EFZ74845.1| DNA replication and repair protein recF [Escherichia coli RN587/1] gi|323376400|gb|ADX48668.1| DNA replication and repair protein RecF [Escherichia coli KO11] gi|323934949|gb|EGB31327.1| DNA replication and repair protein RecF [Escherichia coli E1520] gi|323939116|gb|EGB35330.1| DNA replication and repair protein RecF [Escherichia coli E482] gi|323944172|gb|EGB40252.1| DNA replication and repair protein RecF [Escherichia coli H120] gi|323949943|gb|EGB45827.1| DNA replication and repair protein RecF [Escherichia coli H252] gi|323955006|gb|EGB50784.1| DNA replication and repair protein RecF [Escherichia coli H263] gi|323959765|gb|EGB55415.1| DNA replication and repair protein RecF [Escherichia coli H489] gi|323971177|gb|EGB66423.1| DNA replication and repair protein RecF [Escherichia coli TA007] gi|324008036|gb|EGB77255.1| recombination protein F [Escherichia coli MS 57-2] gi|326337251|gb|EGD61086.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7 str. 1044] gi|326341622|gb|EGD65411.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7 str. 1125] gi|331036718|gb|EGI08944.1| DNA replication and repair protein RecF [Escherichia coli H736] gi|331042024|gb|EGI14168.1| DNA replication and repair protein RecF [Escherichia coli M605] gi|331047375|gb|EGI19453.1| DNA replication and repair protein RecF [Escherichia coli M718] gi|331053257|gb|EGI25290.1| DNA replication and repair protein RecF [Escherichia coli TA206] gi|331057860|gb|EGI29846.1| DNA replication and repair protein RecF [Escherichia coli TA143] gi|331067635|gb|EGI39037.1| DNA replication and repair protein RecF [Escherichia coli TA280] gi|331072970|gb|EGI44295.1| DNA replication and repair protein RecF [Escherichia coli H591] gi|331077795|gb|EGI49007.1| DNA replication and repair protein RecF [Escherichia coli H299] Length = 357 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|325124859|gb|ADY84189.1| DNA repair and genetic recombination protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 381 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ Sbjct: 1 MYLSRFKQSGFRNLAPLDLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G FA + G + + L + + +N V + + HL Sbjct: 61 IAFGQD-----FASLAGRVHKRQLDLDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D I+P + + +L++ RN L D Sbjct: 116 FSPEDMELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + Q+A ++ R + L+ E + + +L + K Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +K++ + + + T +GPHR DL K + S G+Q+ + + Sbjct: 236 DQPAQIKQKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +LI TG PILLLD++ + LD++++ AL + +Q F+T TD Sbjct: 295 SLKLAEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQTQTFITTTDLDSISQ 353 Query: 357 SLNETAKFMRISNHQAL 373 + + + I + Q + Sbjct: 354 EIVKQPRIFYIHSGQII 370 >gi|148378015|ref|YP_001252556.1| DNA replication and repair protein RecF [Clostridium botulinum A str. ATCC 3502] gi|148287499|emb|CAL81558.1| DNA replication and repair protein [Clostridium botulinum A str. ATCC 3502] Length = 367 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 165/373 (44%), Gaps = 15/373 (4%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D Sbjct: 3 RMYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKD 62 Query: 64 VTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + + + ++ T+ E ++ DI+I + + +N + I+ + EL +L + Sbjct: 63 LIKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNV 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SS 181 P RI RR+FLD + I+ + ++ + +++ RN L + Sbjct: 118 VMFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKIND 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+++ G I R + ++ L+ + +K ++ + K F Sbjct: 178 IIDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFD 234 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++E L RK D T IGPHR D V + I GS G+Q+ ++ + Sbjct: 235 NAEKELLIVLKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKF 293 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A +I N G P+LLLD++ + LD +++ + + I Q +T T D + Sbjct: 294 ASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDK 351 Query: 362 --AKFMRISNHQA 372 ++ ++N + Sbjct: 352 KQSQLYLVNNGKI 364 >gi|49473790|ref|YP_031832.1| recombination protein F [Bartonella quintana str. Toulouse] gi|49239293|emb|CAF25619.1| DNA replication and repair protein recF [Bartonella quintana str. Toulouse] Length = 377 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 165/375 (44%), Positives = 233/375 (62%), Gaps = 6/375 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +++ ++ L + +RNY+S + F QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y Sbjct: 5 VHKVTVRQLRLVRYRNYSSFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAY 64 Query: 62 ADVTRIGS-PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +DV+ S + F FAR++ + G DI + D+ R + IN V + D L + Sbjct: 65 SDVSFADSGNTGFVVFARLQCALYGEVDIGTAWDIDDN--SRKVHINGVN-KTGDCLTDY 121 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 +S L PSMD +F+G S+ERRRFLDRMV AIDP H RR++D++R MR RNRL ++G D Sbjct: 122 CHMSVLTPSMDGLFTGSSLERRRFLDRMVLAIDPFHGRRIMDYDRAMRARNRLFSDGSED 181 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238 +W ++E QMAEL I AR+++I L+ + + FP L + GFL+ + Sbjct: 182 RAWFDALEKQMAELATAIAAARIDIIRLLNGMFAQAPVHTPFPRAFLQVDGFLETALSKA 241 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S ++E++ +L R +D + RTL GPHR+DL + Y DK + A STGEQK ++ G Sbjct: 242 SAIEVEEQFCDRLQHNRAIDRAAGRTLEGPHRTDLQIFYADKNMAAASCSTGEQKALVTG 301 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + L HARL + APILLLDEI AHLD +R ALF ++ D+G Q FMTGTD +FD+L Sbjct: 302 LVLCHARLTGIMSERAPILLLDEIVAHLDSHRRAALFDLLDDLGGQTFMTGTDPILFDAL 361 Query: 359 NETAKFMRISNHQAL 373 A+F I + L Sbjct: 362 KGRAEFFEIKDGTLL 376 >gi|260101875|ref|ZP_05752112.1| recombination protein F [Lactobacillus helveticus DSM 20075] gi|260084303|gb|EEW68423.1| recombination protein F [Lactobacillus helveticus DSM 20075] gi|328468763|gb|EGF39734.1| recombination protein F [Lactobacillus helveticus MTCC 5463] Length = 375 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 154/376 (40%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + FRN L + FD IF+G N GKTN+LEAI FL+ R R S ++ Sbjct: 1 MYLDHFVVQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + G + + + L + + + IN V + + L Sbjct: 61 IGFGGE-----YTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D+ I+ + + +++ +N L + D Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A + ++ R + + LS + KL++ ++ Sbjct: 176 VFLDVLSDQLAGIAAEVIFRRFKFLRYLSHYASNAYAHISLGGEKLAIAYHPSVSTIEAD 235 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++E Y K L + ++ T GPHR D+ K + + S G+Q+ + + Sbjct: 236 DTVEEIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTDLEGISL 353 Query: 357 SLNETAKFMRISNHQA 372 + + + + + + Sbjct: 354 EIIKKPRVYHMQSGKI 369 >gi|227113114|ref|ZP_03826770.1| recombination protein F [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|253686412|ref|YP_003015602.1| DNA replication and repair protein RecF [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259563667|sp|C6DGH9|RECF_PECCP RecName: Full=DNA replication and repair protein recF gi|251752990|gb|ACT11066.1| DNA replication and repair protein RecF [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 361 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F R++G E + + + D VR I+ V EL + L I Sbjct: 61 IRHDQPEF-VLHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL+R RN L + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFAAWSNMKRLLRQRNAALRQ-VSHYGQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R + A+++ I + P LS + + Sbjct: 176 AWDQELVPLAERISEWRAQYSAAIANDIA-TTCTQFLPEFSLSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D M T +GPH++D + A+ S G+ K+++ + LA Sbjct: 229 -EYAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ G + L+D+ ++ LD +R L + +Q+F++ D + E K Sbjct: 287 EFLTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|262273132|ref|ZP_06050949.1| DNA recombination and repair protein RecF [Grimontia hollisae CIP 101886] gi|262222888|gb|EEY74196.1| DNA recombination and repair protein RecF [Grimontia hollisae CIP 101886] Length = 358 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 81/369 (21%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I + RN + L + VG NG GKT++LEA+ +L GR FR V Sbjct: 1 MALSRLSIHDLRNIEACDLSLSSGFNFLVGPNGSGKTSVLEAVYYLGHGRSFRSPLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R R++ + L + ++ V+ I + + + +L + L + Sbjct: 61 IRHQQDR-LVVHGRIQHGDTLLPVGLQKNRDGSTEVK---IGEERGQKLVQLAEVLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR F+D VF ++P+ +RL + RN L+ S Sbjct: 117 ITPEGFELLTGGPKFRRAFIDWGVFHVEPQFYPVWARVKRLTKQRNALMKTARSYRE-LS 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +A++A L +I+ R E I L+ + + P ++ L+ + Sbjct: 176 YWDAELAPLANQIDQWRKEYIEKLAERAAKLCEA-FLPEYEIRLSYSRGWDKETG----- 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA L D D T+ GPH++DL + + S G+ K+++ + LA Sbjct: 230 --YADLLRDNFLRDQQLGYTVSGPHKADLRLRVGGTPVEDVL-SRGQLKLMVCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363 + +++ I L+D+ ++ LD +R L + G+Q+F++ + +E +K Sbjct: 287 QQLTDDKKKQCIYLIDDFASELDSQRRALLAEQLKATGAQVFVSAISADQVAEMCDENSK 346 Query: 364 FMRISNHQA 372 + + + Sbjct: 347 MFHVEHGKI 355 >gi|238750287|ref|ZP_04611789.1| DNA replication and repair protein recF [Yersinia rohdei ATCC 43380] gi|238711520|gb|EEQ03736.1| DNA replication and repair protein recF [Yersinia rohdei ATCC 43380] Length = 361 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F RV+ E + + + D VR I+ V EL + L + Sbjct: 61 IRHDCPEF-VLHGRVDANERESSVGLSKSRLGDSKVR---IDGTDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + + Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAMAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|77464922|ref|YP_354426.1| recombination protein F [Rhodobacter sphaeroides 2.4.1] gi|77389340|gb|ABA80525.1| RecF protein [Rhodobacter sphaeroides 2.4.1] Length = 368 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 140/370 (37%), Positives = 203/370 (54%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + R+ FD + FVG NG GKTN+LEAIS LSPGRG RRA+ ++ Sbjct: 9 LAVTSLALSHFRSHRAARMGFDGRPVAFVGSNGAGKTNLLEAISLLSPGRGLRRAAADEI 68 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A V G+ +I E R VR D L + LRI W Sbjct: 69 ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRV----DGKAATQVMLGRLLRIVW 124 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR+++ + RRRFLDR+ + P H ++D+E+ MR RNRLL E D+ W Sbjct: 125 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 184 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E +MAE I R E + L + + + FP LS+ Sbjct: 185 ALEGRMAEAARAIRAHRDEAVARL--MAAQGAAETAFPRAMLSVAS-----------DDP 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ +GR+ D + RTL+GPHR+DL Y K + A STGEQK +L+ + LA+A Sbjct: 232 EDLGAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G AP+LLLDE++AHLDE +R ALF + +G+Q FMTGT +F +L + A+ Sbjct: 292 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 351 Query: 365 MRISNHQALC 374 + ++ Q L Sbjct: 352 IEVTEAQGLS 361 >gi|332997866|gb|EGK17474.1| DNA replication and repair protein recF [Shigella flexneri K-272] gi|333013661|gb|EGK33026.1| DNA replication and repair protein recF [Shigella flexneri K-227] Length = 357 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 157/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +PR + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPRFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|328471240|gb|EGF42142.1| recombination protein F [Vibrio parahaemolyticus 10329] Length = 359 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 153/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + V Sbjct: 1 MPLSRLIIQQFRNIKACDIQLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF +P F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTASSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R I + + E + + P ++ L + D Sbjct: 177 YWDQEMARLAENISQWRSLYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YQEILEKNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T+ + D L++ K Sbjct: 288 QHLTAMTGKQCIYLIDDFASELDSQRRKRLAACLKETGAQVFVSSITENQIADMLDDNGK 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 LFHVEHGRI 356 >gi|110644043|ref|YP_671773.1| recombination protein F [Escherichia coli 536] gi|191170384|ref|ZP_03031937.1| DNA replication and repair protein RecF [Escherichia coli F11] gi|300983651|ref|ZP_07176692.1| recombination protein F [Escherichia coli MS 200-1] gi|123343429|sp|Q0TB07|RECF_ECOL5 RecName: Full=DNA replication and repair protein recF gi|110345635|gb|ABG71872.1| DNA replication and repair protein RecF [Escherichia coli 536] gi|190909192|gb|EDV68778.1| DNA replication and repair protein RecF [Escherichia coli F11] gi|300306874|gb|EFJ61394.1| recombination protein F [Escherichia coli MS 200-1] gi|324012739|gb|EGB81958.1| recombination protein F [Escherichia coli MS 60-1] Length = 357 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSGGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|218551230|ref|YP_002385022.1| recombination protein F [Escherichia fergusonii ATCC 35469] gi|226737798|sp|B7LK42|RECF_ESCF3 RecName: Full=DNA replication and repair protein recF gi|218358772|emb|CAQ91429.1| gap repair protein [Escherichia fergusonii ATCC 35469] gi|323965761|gb|EGB61212.1| DNA replication and repair protein RecF [Escherichia coli M863] gi|323975233|gb|EGB70337.1| DNA replication and repair protein RecF [Escherichia coli TW10509] gi|324111597|gb|EGC05578.1| DNA replication and repair protein RecF [Escherichia fergusonii B253] gi|327250843|gb|EGE62545.1| DNA replication and repair protein recF [Escherichia coli STEC_7v] Length = 357 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAFI-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|188491708|ref|ZP_02998978.1| DNA replication and repair protein RecF [Escherichia coli 53638] gi|188486907|gb|EDU62010.1| DNA replication and repair protein RecF [Escherichia coli 53638] Length = 357 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 157/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAAHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|320157814|ref|YP_004190193.1| DNA recombination and repair protein RecF [Vibrio vulnificus MO6-24/O] gi|319933126|gb|ADV87990.1| DNA recombination and repair protein RecF [Vibrio vulnificus MO6-24/O] Length = 359 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 154/367 (41%), Gaps = 14/367 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + +G NG GKT++LEAI L GR F+ A V Sbjct: 1 MPLSRLIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECDQLFVHGRFLNSDQFELPIGINKQRDGTTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF +P F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R + + + S E + +E P + L + + + Sbjct: 177 YWDKEMARLAELISQWRADYVAQMQSKA-EQLCQEFLPEFHIQLKYYRGWEKETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + + D T+ GP+++DL + + + S G+ K+++ + LA Sbjct: 231 --YQQILEENFERDQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG + L+D+ ++ LD +R L + G+Q+F++ T+ + D +++ + Sbjct: 288 QHLTEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGR 347 Query: 364 FMRISNH 370 + Sbjct: 348 LFHVEQG 354 >gi|289826403|ref|ZP_06545515.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 357 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEECETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|325499507|gb|EGC97366.1| recombination protein F [Escherichia fergusonii ECD227] Length = 357 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 157/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAFI-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D + T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRLLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|255262668|ref|ZP_05342010.1| DNA replication and repair protein RecF [Thalassiobium sp. R2A62] gi|255105003|gb|EET47677.1| DNA replication and repair protein RecF [Thalassiobium sp. R2A62] Length = 368 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 137/371 (36%), Positives = 208/371 (56%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L IS FR++ + L DA+ G NGVGKTN++EAIS LSPGRG RR+S D+ Sbjct: 4 LRLSELTISHFRSHKRVALEIDARPVAIYGANGVGKTNLIEAISLLSPGRGLRRSSAEDI 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + A + + L +I E R V+ D L + R+ W Sbjct: 64 TRRPEAVGWKVRAVLHSLNQLHEIETWSEGGSARQVKV----DSKASTQVALGRIGRLLW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MDR++ + RRRFLDR + +P H ++ +++ MR RNRLL + D W Sbjct: 120 LIPAMDRLWIEGAEGRRRFLDRATLSFEPTHAEAVLTYDKAMRERNRLLKDQVRDGHWYV 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +IEAQMAE G++I R I+ L + + + FP L L + D+ A Sbjct: 180 AIEAQMAEAGLRITQNRAFAISEL--MAAQASARTAFPTAVLQL-----LEGDEGLPASV 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +++ L + R+ D + RTLIGPHR+DL Y K I STGEQK +L+ + LA+ Sbjct: 233 DDHRTALSENRQRDLYAGRTLIGPHRTDLGATYAAKDIPAKDCSTGEQKALLISLILANG 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ + G P+LLLDE++AHLD D+R AL+ +T +G+Q +MTGT +FD+L + A++ Sbjct: 293 RALAQSFGAPPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTGPELFDTLGDRAQY 352 Query: 365 MRISNHQALCI 375 + +S A + Sbjct: 353 LDVSEDCAALV 363 >gi|27364431|ref|NP_759959.1| recombination protein F [Vibrio vulnificus CMCP6] gi|32129961|sp|Q8DDJ1|RECF_VIBVU RecName: Full=DNA replication and repair protein recF gi|27360550|gb|AAO09486.1| DNA recombination and repair protein RecF [Vibrio vulnificus CMCP6] Length = 359 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 154/367 (41%), Gaps = 14/367 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + +G NG GKT++LEAI L GR F+ A V Sbjct: 1 MPLSRLIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECDQLFVYGRFLNSDQFELPIGINKQRDGTTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF +P F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R + + + S E + +E P + L + + + Sbjct: 177 YWDKEMARLAELISQWRADYVAQMQSKA-EQLCQEFLPEFHIQLKYYRGWEKETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + + D T+ GP+++DL + + + S G+ K+++ + LA Sbjct: 231 --YQQILEENFERDQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG + L+D+ ++ LD +R L + G+Q+F++ T+ + D +++ + Sbjct: 288 QHLTEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGR 347 Query: 364 FMRISNH 370 + Sbjct: 348 LFHVEQG 354 >gi|126460791|ref|YP_001041905.1| recombination protein F [Rhodobacter sphaeroides ATCC 17029] gi|126102455|gb|ABN75133.1| DNA replication and repair protein RecF [Rhodobacter sphaeroides ATCC 17029] Length = 363 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 141/370 (38%), Positives = 203/370 (54%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + R+ FD + FVG NG GKTN+LEAIS LSPGRG RRA+ ++ Sbjct: 4 LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A V G+ +I E R VR D L + LRI W Sbjct: 64 ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRI----DGKAATQVMLGRLLRIVW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR+++ + RRRFLDR+ + P H ++D+E+ MR RNRLL E D+ W Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E +MAE I R E + L + + + FP LS+ Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAVLSVAS-----------DDP 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ A +GR+ D + RTL+GPHR+DL Y K + A STGEQK +L+ + LA+A Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G AP+LLLDE++AHLDE +R ALF + +G+Q FMTGT +F +L A+ Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGYRAQR 346 Query: 365 MRISNHQALC 374 + ++ Q L Sbjct: 347 IEVTEAQGLS 356 >gi|262046285|ref|ZP_06019248.1| recombination protein F [Lactobacillus crispatus MV-3A-US] gi|260573615|gb|EEX30172.1| recombination protein F [Lactobacillus crispatus MV-3A-US] Length = 375 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 154/376 (40%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + FRN L + FD+ IF+G N GKTN+LEAI FL+ R R + D+ Sbjct: 1 MYLDHFTVQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F + G + + + L + + + IN V + + L Sbjct: 61 IGFGGE-----FTNLLGHVHKSQVDLDLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D+ I+ + + +++ +N L + D Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A + ++ R + + LS + + + S+ Q+ Sbjct: 176 VFLDVLSDQLAGIAAEVVFRRFKFLKYLSHYASDAYAHISLGSEQFSIAYHPSVADIQAD 235 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + +E Y K L + + T GPHR D+ + + + S G+Q+ + + Sbjct: 236 DSTEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFKLDGQNAHL-YASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + + I + + Sbjct: 354 EIIKKPRVYHIQSGKI 369 >gi|157368283|ref|YP_001476272.1| recombination protein F [Serratia proteamaculans 568] gi|166918726|sp|A8G7Q4|RECF_SERP5 RecName: Full=DNA replication and repair protein recF gi|157320047|gb|ABV39144.1| DNA replication and repair protein RecF [Serratia proteamaculans 568] Length = 361 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEA+ L GR FR V Sbjct: 1 MALTRLLIKDFRNIEAADLALAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F R++G E + + + D VR I+ V EL + L + Sbjct: 61 IRHDQPEFI-LHGRIDGAEREISVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I + P LS + + Sbjct: 176 AWDQELIPLAERISEWRAAYSDAIAADITATCA-QFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + L+D+ ++ LD +R L + +Q+F++ + V D E K Sbjct: 287 EFLTRQSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|292490134|ref|YP_003533029.1| DNA replication and repair protein RecF [Erwinia amylovora CFBP1430] gi|292901138|ref|YP_003540507.1| DNA replication and repair protein [Erwinia amylovora ATCC 49946] gi|291200986|emb|CBJ48125.1| DNA replication and repair protein [Erwinia amylovora ATCC 49946] gi|291555576|emb|CBA24169.1| DNA replication and repair protein recF [Erwinia amylovora CFBP1430] Length = 361 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 146/369 (39%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIEDADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R+ E + + D VR I+ V EL + L + Sbjct: 61 IRHDRDAF-VLHGRIAATEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F +P + RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFNAWSNLRRLLKQRNAALRQ-VSRYQQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++A L +I+ R A+++ I + P +LS + D Sbjct: 176 AWDQELAPLAEQISQWRAAYSEAIAADINATCA-QFLPEFQLSFSFQRGWDKDSG----- 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T GPH++D + + S G+ K+++ + LA Sbjct: 230 --YAELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ G + L+D+ ++ LDE +R L + +Q+F++ FD +E K Sbjct: 287 EFLTRQNGRRCLYLIDDFASELDETRRQLLAAHLKATQAQVFVSAIAAEHVFDMADEKGK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFHVEQGKI 355 >gi|256021282|ref|ZP_05435147.1| recombination protein F [Shigella sp. D9] gi|331670544|ref|ZP_08371383.1| DNA replication and repair protein RecF [Escherichia coli TA271] gi|332282513|ref|ZP_08394926.1| gap repair protein [Shigella sp. D9] gi|331062606|gb|EGI34526.1| DNA replication and repair protein RecF [Escherichia coli TA271] gi|332104865|gb|EGJ08211.1| gap repair protein [Shigella sp. D9] Length = 357 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 157/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ +++ K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMVDTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|104773261|ref|YP_618241.1| recombination protein F [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123378549|sp|Q1GC40|RECF_LACDA RecName: Full=DNA replication and repair protein recF gi|103422342|emb|CAI96850.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 381 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ Sbjct: 1 MYLSRFKQSGFRNLAPLNLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G FA + G + + L + + +N V + + HL Sbjct: 61 IAFGQD-----FASLAGRVHKRQLDLDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D I+P + + +L++ RN L D Sbjct: 116 FSPEDMELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + Q+A ++ R + L+ E + + +L + K Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +K++ + + + T +GPHR DL K + S G+Q+ + + Sbjct: 236 DQPAQIKQKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +LI TG PILLLD++ + LD++++ AL + +Q F+T TD Sbjct: 295 SLKLAEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQTQTFITTTDLDSISQ 353 Query: 357 SLNETAKFMRISNHQAL 373 + + + I + Q + Sbjct: 354 EIVKQPRIFYIHSGQII 370 >gi|254295378|ref|YP_003061401.1| DNA replication and repair protein RecF [Hirschia baltica ATCC 49814] gi|254043909|gb|ACT60704.1| DNA replication and repair protein RecF [Hirschia baltica ATCC 49814] Length = 396 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 136/382 (35%), Positives = 213/382 (55%), Gaps = 10/382 (2%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 + I+ L + FRN+AS L DA+ G NG GKTN+LEA+S L PG+G R AS Sbjct: 17 PQGLTIQRLALHNFRNHASTVLEMDARPVCLFGANGAGKTNLLEAVSMLGPGKGLRAASL 76 Query: 62 ADVTRIGSPS----FFSTFARVEGMEGLADISIKLETR-DDRSVRCLQINDVVIRVVDEL 116 + R+ + ++ AR++ IS+ L+ D R+ R +++D + L Sbjct: 77 PSLVRVEAGESVVGGWAISARMDDAGLDRQISVGLDVSPDGRTRRVAKLDDAPV-SQTNL 135 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 + +R+ WL P+MDR+F+G + +RR+F DR V A P H +E+ MR RN L +G Sbjct: 136 AELVRVVWLTPAMDRVFAGPAGDRRKFYDRQVLAHVPAHGSASAAYEKAMRERNALFEQG 195 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 D+SW ++EA++AE G I + R + + + I + + +FP LS+ G + Sbjct: 196 RMDASWLDALEARLAEAGAAIAVNRATALKRIQAAI-DARPEGHFPKADLSIAGKFEAMA 254 Query: 237 DQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 Q S A++ + L GR DS++ RTL G HRSDL V + K + A STGEQK Sbjct: 255 LQGDSQAAIEGAISDSLKVGRARDSVAGRTLAGVHRSDLQVVHRPKQLPAAQCSTGEQKA 314 Query: 295 VLVGIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 +L+G+ LA+A+ L+ P+LLLDE +AHLD +R AL+ + +G Q ++TGTD + Sbjct: 315 LLMGMILANAKALLEGDFAPNPLLLLDEAAAHLDSVRRAALYDELAALGGQAWLTGTDAA 374 Query: 354 VFDSLNETAKFMRISNHQALCI 375 +FD+ + A+ + N Q + + Sbjct: 375 LFDAFGDRAQRFCVENGQVIKV 396 >gi|283787600|ref|YP_003367465.1| DNA replication and repair protein [Citrobacter rodentium ICC168] gi|282951054|emb|CBG90732.1| DNA replication and repair protein [Citrobacter rodentium ICC168] Length = 357 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R SF R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHDQESF-VLHGRLQGDERETSIGLSKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R ++ + + Q + P LS + + + Sbjct: 176 PWDKELIPLAEQISAWRAAYSAGIAQDMADTCQ-QFLPEFTLSFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EYLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFNVEKGKI 355 >gi|193063850|ref|ZP_03044937.1| DNA replication and repair protein RecF [Escherichia coli E22] gi|194428115|ref|ZP_03060659.1| DNA replication and repair protein RecF [Escherichia coli B171] gi|209921177|ref|YP_002295261.1| recombination protein F [Escherichia coli SE11] gi|260846515|ref|YP_003224293.1| gap repair protein RecF [Escherichia coli O103:H2 str. 12009] gi|226737795|sp|B6I3T3|RECF_ECOSE RecName: Full=DNA replication and repair protein recF gi|192930565|gb|EDV83172.1| DNA replication and repair protein RecF [Escherichia coli E22] gi|194413873|gb|EDX30151.1| DNA replication and repair protein RecF [Escherichia coli B171] gi|209914436|dbj|BAG79510.1| DNA replication and repair protein RecF [Escherichia coli SE11] gi|257761662|dbj|BAI33159.1| gap repair protein RecF [Escherichia coli O103:H2 str. 12009] gi|323161048|gb|EFZ46967.1| DNA replication and repair protein recF [Escherichia coli E128010] gi|324018432|gb|EGB87651.1| recombination protein F [Escherichia coli MS 117-3] gi|324115948|gb|EGC09874.1| DNA replication and repair protein RecF [Escherichia coli E1167] Length = 357 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R + +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAQYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|110807610|ref|YP_691130.1| recombination protein F [Shigella flexneri 5 str. 8401] gi|123342286|sp|Q0SYP0|RECF_SHIF8 RecName: Full=DNA replication and repair protein recF gi|110617158|gb|ABF05825.1| ssDNA and dsDNA binding, ATP binding [Shigella flexneri 5 str. 8401] Length = 357 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGCV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMDDTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|24114990|ref|NP_709500.1| recombination protein F [Shigella flexneri 2a str. 301] gi|30065008|ref|NP_839179.1| recombination protein F [Shigella flexneri 2a str. 2457T] gi|51316304|sp|Q7BZ80|RECF_SHIFL RecName: Full=DNA replication and repair protein recF gi|24054242|gb|AAN45207.1| Rec protein [Shigella flexneri 2a str. 301] gi|30043269|gb|AAP18990.1| Rec protein [Shigella flexneri 2a str. 2457T] gi|281603073|gb|ADA76057.1| DNA replication and repair protein recF [Shigella flexneri 2002017] gi|313647708|gb|EFS12156.1| DNA replication and repair protein recF [Shigella flexneri 2a str. 2457T] gi|332750521|gb|EGJ80930.1| DNA replication and repair protein recF [Shigella flexneri K-671] gi|332750692|gb|EGJ81100.1| DNA replication and repair protein recF [Shigella flexneri 4343-70] gi|332751786|gb|EGJ82184.1| DNA replication and repair protein recF [Shigella flexneri 2747-71] gi|332764071|gb|EGJ94308.1| DNA replication/repair protein RecF [Shigella flexneri 2930-71] gi|332997495|gb|EGK17111.1| DNA replication and repair protein recF [Shigella flexneri K-218] gi|333013217|gb|EGK32590.1| DNA replication and repair protein recF [Shigella flexneri K-304] Length = 357 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMDDTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|62182324|ref|YP_218741.1| recombination protein F [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168233390|ref|ZP_02658448.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168260380|ref|ZP_02682353.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197251211|ref|YP_002148774.1| recombination protein F [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263684|ref|ZP_03163758.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244935|ref|YP_002217786.1| recombination protein F [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354577|ref|YP_002228378.1| recombination protein F [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859062|ref|YP_002245713.1| recombination protein F [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585635|ref|YP_002639434.1| recombination protein F [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913089|ref|ZP_04656926.1| recombination protein F [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|75505469|sp|Q57I02|RECF_SALCH RecName: Full=DNA replication and repair protein recF gi|226737826|sp|B5EYB2|RECF_SALA4 RecName: Full=DNA replication and repair protein recF gi|226737827|sp|B5FN08|RECF_SALDC RecName: Full=DNA replication and repair protein recF gi|226737828|sp|B5QUP8|RECF_SALEP RecName: Full=DNA replication and repair protein recF gi|226737829|sp|B5RFY9|RECF_SALG2 RecName: Full=DNA replication and repair protein recF gi|254790486|sp|C0Q2K7|RECF_SALPC RecName: Full=DNA replication and repair protein recF gi|62129957|gb|AAX67660.1| gap repair protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|197214914|gb|ACH52311.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241939|gb|EDY24559.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197939451|gb|ACH76784.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274358|emb|CAR39383.1| recF protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205332587|gb|EDZ19351.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205350391|gb|EDZ37022.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710865|emb|CAR35229.1| recF protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470163|gb|ACN47993.1| recombination protein F [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716815|gb|EFZ08386.1| recombination protein F [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326625572|gb|EGE31917.1| recombination protein F [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629713|gb|EGE36056.1| recombination protein F [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 357 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|261819373|ref|YP_003257479.1| recombination protein F [Pectobacterium wasabiae WPP163] gi|261603386|gb|ACX85872.1| DNA replication and repair protein RecF [Pectobacterium wasabiae WPP163] Length = 361 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 151/369 (40%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F R++G E + + + D VR I+ V EL + L I Sbjct: 61 IRHDQPEF-VLHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL+R RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHHEPGFLAAWSNMKRLLRQRNAALRQ-VSHYGQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R + ++S I + P LS + + Sbjct: 176 AWDQELVPLAERISEWRAQYSAGIASDIAATC-TQFLPEFSLSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D M T +GPH++D + A+ S G+ K+++ + L Sbjct: 229 -EYAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLVQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ G + L+D+ ++ LD +R L + +Q+F++ D + E K Sbjct: 287 EFLTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|320174826|gb|EFW49949.1| DNA recombination and repair protein RecF [Shigella dysenteriae CDC 74-1112] Length = 357 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|213424953|ref|ZP_03357703.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 357 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ RVE +A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRVEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|312967890|ref|ZP_07782102.1| DNA replication and repair protein recF [Escherichia coli 2362-75] gi|312287451|gb|EFR15359.1| DNA replication and repair protein recF [Escherichia coli 2362-75] Length = 357 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDRHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|125624996|ref|YP_001033479.1| recombination protein F [Lactococcus lactis subsp. cremoris MG1363] gi|166220713|sp|A2RNA8|RECF_LACLM RecName: Full=DNA replication and repair protein recF gi|124493804|emb|CAL98796.1| DNA replication and repair protein recF [Lactococcus lactis subsp. cremoris MG1363] gi|300071794|gb|ADJ61194.1| recombination protein F [Lactococcus lactis subsp. cremoris NZ9000] Length = 359 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 156/370 (42%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K + + FRNY L+L F IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MKLKQIELKNFRNYEDLKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +V G+ A ++ LE + R + N + + + L+I Sbjct: 61 IRWSGQEM-----KVSGLVEKAHATVPLEVQLSSKGRIAKANHLKENRLADYIGQLKILM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RRRF+D + I + + + R ++ RN L + D ++ Sbjct: 116 FAPENLELVKGSPATRRRFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDQAKIDKNF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + ++ Q+AE G KI R I L + ++ L +T + K D Sbjct: 176 LTVLDEQLAEHGNKIMFERKTFIEKLEIHAKKIHEQLTHGLETLKITYNQNVKTD----- 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++K+L + D +T +GPHR DL D + GS G+Q+ V + I LA Sbjct: 231 ----FSKELLSRQDHDIFRHQTTVGPHRDDLQFFINDINV-ADFGSQGQQRTVALSIKLA 285 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 LI TG PILLLD++ + LD ++ L T +L E Sbjct: 286 EIDLIFEETGEYPILLLDDVMSELDNHRQLDLIETSLGKTQTFIT-TTTLDHLKNLPENL 344 Query: 363 KFMRISNHQA 372 +++ Sbjct: 345 SIFHVTDGTI 354 >gi|194431058|ref|ZP_03063351.1| DNA replication and repair protein RecF [Shigella dysenteriae 1012] gi|194420513|gb|EDX36589.1| DNA replication and repair protein RecF [Shigella dysenteriae 1012] gi|320180041|gb|EFW54983.1| DNA recombination and repair protein RecF [Shigella boydii ATCC 9905] gi|332084050|gb|EGI89257.1| DNA replication and repair protein recF [Shigella dysenteriae 155-74] Length = 357 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLIKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|187732412|ref|YP_001882466.1| recombination protein F [Shigella boydii CDC 3083-94] gi|226737836|sp|B2TUS8|RECF_SHIB3 RecName: Full=DNA replication and repair protein recF gi|187429404|gb|ACD08678.1| DNA replication and repair protein RecF [Shigella boydii CDC 3083-94] Length = 357 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 157/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D + T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRLLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|332996042|gb|EGK15669.1| DNA replication and repair protein recF [Shigella flexneri VA-6] Length = 357 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 157/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +PR + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPRFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMDDTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|260431696|ref|ZP_05785667.1| recombination protein F [Silicibacter lacuscaerulensis ITI-1157] gi|260415524|gb|EEX08783.1| recombination protein F [Silicibacter lacuscaerulensis ITI-1157] Length = 366 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 11/363 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ R+ D + G NG GKTNILEA+S SPGRG RRAS A++ Sbjct: 3 LALTELTVSHFRSHKLARMALDGRPVALYGPNGAGKTNILEAVSLFSPGRGMRRASAAEM 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + ++ ++I E + R ++I+ +D L K R+ W Sbjct: 63 TRRPEALGWKLSGLLDVQGRRSEIETWSE---GGAARQVRIDGKAASQID-LGKLARVVW 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MDR++ + RRRFLDR+ + DP H + +E+ MR RNRLL E D+ W + Sbjct: 119 LMPAMDRLWIEGAEGRRRFLDRVTLSFDPSHAEAALTYEKAMRERNRLLKEQVRDAHWYA 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++EAQMAE G +I+ AR+ + L + + FP +L L D + Sbjct: 179 ALEAQMAETGHRIHTARMNALAQLR--AAQEQAETAFPSAELELVQPEGAMPDSA----- 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ + L + R D + RTL+GPHRSDL + K + + STGEQK +LV + L++A Sbjct: 232 QDLLEALAESRFRDLSAGRTLVGPHRSDLYGVFAAKGVAASECSTGEQKALLVSLILSNA 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G PILLLDE++AHLD D+R AL+ + +G+Q +MT T +F L E A+ Sbjct: 292 RALAAQVGAPPILLLDEVAAHLDADRRAALYDEICALGAQAWMTATGPELFAELGERAQA 351 Query: 365 MRI 367 + Sbjct: 352 FEV 354 >gi|170755060|ref|YP_001779630.1| recombination protein F [Clostridium botulinum B1 str. Okra] gi|226737780|sp|B1IDU6|RECF_CLOBK RecName: Full=DNA replication and repair protein recF gi|169120272|gb|ACA44108.1| DNA replication and repair protein RecF [Clostridium botulinum B1 str. Okra] Length = 364 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 164/372 (44%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ Sbjct: 1 MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + ++ T+ E ++ DI+I + + +N + I+ + EL +L + Sbjct: 61 IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182 P RI RR+FLD + I+ + ++ + +++ RN L + Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+++ G I R + ++ L+ + +K ++ + K F Sbjct: 176 IDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E L RK D T IGPHR D V + I GS G+Q+ ++ + A Sbjct: 233 TEKELLIVLKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361 +I N G P+LLLD++ + LD +++ + + I Q +T T D + Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349 Query: 362 -AKFMRISNHQA 372 ++ ++N + Sbjct: 350 QSQLYLVNNGKI 361 >gi|270264121|ref|ZP_06192388.1| DNA replication and repair protein RecF [Serratia odorifera 4Rx13] gi|270041770|gb|EFA14867.1| DNA replication and repair protein RecF [Serratia odorifera 4Rx13] Length = 361 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEA+ L GR FR V Sbjct: 1 MALTRLLIKDFRNIEAADLALAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F R+EG E + + + D VR I+ V EL + L + Sbjct: 61 IRHDQPEFI-LHGRIEGAEREISVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I + P LS + + Sbjct: 176 AWDQELIPLAERISEWRAAYSDAIAADITATCA-QFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D + T +GPH++D + + S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRVLTYTAVGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + L+D+ ++ LD +R L + +Q+F++ + V D E K Sbjct: 287 EFLTRQSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|329297783|ref|ZP_08255119.1| recombination protein F [Plautia stali symbiont] Length = 361 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 150/369 (40%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIEQADLTLAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R+EG E + + D VR I+ V EL + L + Sbjct: 61 IRHDQDAF-VLHGRIEGSERELAVGLSKNRAGDSKVR---IDGSDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F P + RL++ RN L + S Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHAYPGFFLAWSNLRRLLKQRNAALRQ-VARYSQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E A++S I + P LS + + Sbjct: 176 PWDQELVPLAEQISAWRAEYSAAIASEITATCS-QFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ + L + D T GPH++D + + S G+ K+++ + LA Sbjct: 229 -DFGELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ ++G + L+D+ ++ LD+ +R L + +Q+F++ + V D +E K Sbjct: 287 EYLTRSSGRRCLYLIDDFASELDDTRRRLLAECLKATQAQVFVSAIGVEHVIDMSDEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|160893408|ref|ZP_02074193.1| hypothetical protein CLOL250_00957 [Clostridium sp. L2-50] gi|156864803|gb|EDO58234.1| hypothetical protein CLOL250_00957 [Clostridium sp. L2-50] Length = 360 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 96/355 (27%), Positives = 159/355 (44%), Gaps = 20/355 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ LNI+ +RNY L + FD I GDN GKTNILE+I + + R + ++ Sbjct: 1 MYVESLNINNYRNYDELFITFDKNTNILYGDNAQGKTNILESIYMAATTKSHRGSKDREI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 +IG + + +DIS +++ + + + I+ + IR EL L + Sbjct: 61 IKIGEEE-----SHIRLCIKKSDISHRIDMHLRKNKNKGVAIDGLPIRRTTELFGLLNVI 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRFLD + + + + + + +++ RN LL + ++ S Sbjct: 116 FFSPEDLSIIKNGPSERRRFLDLELCQLSRLYYQNLSSYSKILNQRNNLLKQIVYNKSLM 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 Q+ + G K+ R I L++LI E K KL + + D Sbjct: 176 DTLDVWNIQLVDYGKKVIKERQNFIMMLNNLIGEIHSKLTSGKEKLEIIYDKNVSED--- 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E+ K L D +D T GPHR D++ + GS G+Q+ V + + Sbjct: 233 -----EFEKVLADKVHVDLNYMSTQTGPHRDDIMFMI-NGIDARRFGSQGQQRTVALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 +A +L+ N PILLLD++ + LD +R AL + DI Q +T T F Sbjct: 287 IAEIKLVKNIINDNPILLLDDVMSELDSSRREALLEEIKDI--QTIITCTGYDDF 339 >gi|114762140|ref|ZP_01441608.1| recombination protein F [Pelagibaca bermudensis HTCC2601] gi|114545164|gb|EAU48167.1| recombination protein F [Roseovarius sp. HTCC2601] Length = 369 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 199/371 (53%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + DA+ G NG GKTN++EA+S LSPGRG RRAS ++ Sbjct: 4 LHLSSLTLSHFRSHKRAAVEVDARPVAIFGPNGAGKTNLIEAVSLLSPGRGMRRASAQEM 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + A + G EG ++IS++ E+ R V +I+ L + R+ W Sbjct: 64 TRRPEALGWKIGAVLHGPEGASEISVRSESGGSRQV---EIDGKPA-PQTALGRIARVLW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+PSMDR++ RRRFLDRM + P H + +E+ MR RNRLL E D+ W + Sbjct: 120 LIPSMDRLWIEAPEGRRRFLDRMTLSFFPDHADASLTYEKAMRERNRLLKEQIRDAHWYA 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E QMA+ G I R + + +FP L+L + + Sbjct: 180 ALETQMAQSGALIQQNRQA--ALARLARAQDGAETSFPAADLALVST-----EADIPETE 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ +GR D + RTL+GPHRSDL + K + + STGEQK +L+ + LA+A Sbjct: 233 EDLRAVFAEGRFRDMAAGRTLVGPHRSDLYGVFAAKGVPASDCSTGEQKALLISLILANA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F L + A+ Sbjct: 293 RALAAEIGAPPLLLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFAELGDRAQR 352 Query: 365 MRISNHQALCI 375 ++++ + Sbjct: 353 LQVTEEAGQSV 363 >gi|16762489|ref|NP_458106.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143977|ref|NP_807319.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|168818304|ref|ZP_02830304.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|213052918|ref|ZP_03345796.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213581831|ref|ZP_03363657.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609169|ref|ZP_03368995.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|20978597|sp|Q8Z2N4|RECF_SALTI RecName: Full=DNA replication and repair protein recF gi|25300556|pir||AC0958 recF protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504794|emb|CAD03159.1| recF protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139613|gb|AAO71179.1| recF protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|205344501|gb|EDZ31265.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088257|emb|CBY98019.1| DNA replication and repair protein recF [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 357 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|149912810|ref|ZP_01901344.1| recombination protein F [Roseobacter sp. AzwK-3b] gi|149813216|gb|EDM73042.1| recombination protein F [Roseobacter sp. AzwK-3b] Length = 370 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 195/370 (52%), Gaps = 11/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L +S FR++ RL DA+ G NG GKTNILEA+S SPGRG RRA+ D+ Sbjct: 4 LHISRLTLSHFRSHKGARLDVDARPVAIYGPNGAGKTNILEAVSLFSPGRGLRRAAAQDM 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + + L ++ + E + + R +I+ L + R+ W Sbjct: 64 ARRPEALGWKVTGILHSLHQLHEVELWSE---EGAARQTRIDGKPA-AQTALGRIARVLW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVPSMDR++ + RRRFLDRM + P H + +E+ MR RNRLL + D+ W Sbjct: 120 LVPSMDRLWIEGTEGRRRFLDRMTLSFRPDHADISLTYEKAMRERNRLLKDQVRDAHWYV 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E Q+AE G I+ R+ ++ L + + FP L L + Sbjct: 180 ALERQLAETGAAIHANRLYALDQLRE--AQAQAETAFPAADLDLIST-----EADMPDTP 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + A+ L + R D + RTLIGPHR+DL Y K + STGEQK +LV + LA+A Sbjct: 233 ADLAEALAESRFRDLAAGRTLIGPHRADLYGVYAAKGVPARDCSTGEQKALLVSLILANA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F L + A++ Sbjct: 293 RALARDFGAPPLLLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFSDLGDRAQY 352 Query: 365 MRISNHQALC 374 + ++ + Sbjct: 353 IEVTETDGIS 362 >gi|161506638|ref|YP_001576586.1| recombination protein F [Lactobacillus helveticus DPC 4571] gi|172048333|sp|A8YW44|RECF_LACH4 RecName: Full=DNA replication and repair protein recF gi|160347627|gb|ABX26301.1| DNA repair and genetic recombination protein [Lactobacillus helveticus DPC 4571] Length = 375 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 154/376 (40%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + FRN L + FD IF+G N GKTN+LEAI FL+ R R S ++ Sbjct: 1 MYLDHFVVQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + G + + + L + + + IN V + + L Sbjct: 61 IGFGGE-----YTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + RRRF+D+ I+ + + +++ +N L + D Sbjct: 116 FSPEDLELIKSAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+A + ++ R + + LS + + KL++ ++ Sbjct: 176 VFLDVLSDQLAGIAAEVIFRRFKFLRYLSHYASDVYAHISLGGEKLAIAYHPSVSTIEAD 235 Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++E Y K L + ++ T GPHR D+ K + + S G+Q+ + + Sbjct: 236 DTVEEIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +L+ T P+LLLD++ + LD +++AL + +Q F+T TD Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + + + + + Sbjct: 354 EIIKKPRVYHMQSGKI 369 >gi|56415709|ref|YP_152784.1| recombination protein F [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364637|ref|YP_002144274.1| recombination protein F [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81678054|sp|Q5PKU8|RECF_SALPA RecName: Full=DNA replication and repair protein recF gi|226737832|sp|B5BIL2|RECF_SALPK RecName: Full=DNA replication and repair protein recF gi|56129966|gb|AAV79472.1| recF protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096114|emb|CAR61710.1| recF protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 357 Score = 312 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEEREMSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|161616953|ref|YP_001590918.1| recombination protein F [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168464834|ref|ZP_02698726.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|189039639|sp|A9MX74|RECF_SALPB RecName: Full=DNA replication and repair protein recF gi|161366317|gb|ABX70085.1| hypothetical protein SPAB_04774 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195632488|gb|EDX50972.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 357 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|153933867|ref|YP_001382414.1| recombination protein F [Clostridium botulinum A str. ATCC 19397] gi|153935303|ref|YP_001385966.1| recombination protein F [Clostridium botulinum A str. Hall] gi|168181119|ref|ZP_02615783.1| DNA replication and repair protein RecF [Clostridium botulinum NCTC 2916] gi|226947226|ref|YP_002802317.1| DNA replication and repair protein RecF [Clostridium botulinum A2 str. Kyoto] gi|166220704|sp|A7FPF3|RECF_CLOB1 RecName: Full=DNA replication and repair protein recF gi|254790469|sp|C1FPH6|RECF_CLOBJ RecName: Full=DNA replication and repair protein recF gi|152929911|gb|ABS35411.1| DNA replication and repair protein RecF [Clostridium botulinum A str. ATCC 19397] gi|152931217|gb|ABS36716.1| DNA replication and repair protein RecF [Clostridium botulinum A str. Hall] gi|182668165|gb|EDT80144.1| DNA replication and repair protein RecF [Clostridium botulinum NCTC 2916] gi|226842327|gb|ACO84993.1| DNA replication and repair protein RecF [Clostridium botulinum A2 str. Kyoto] Length = 364 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 164/372 (44%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ Sbjct: 1 MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + ++ T+ E ++ DI+I + + +N + I+ + EL +L + Sbjct: 61 IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182 P RI RR+FLD + I+ + ++ + +++ RN L + Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+++ G I R + ++ L+ + +K ++ + K F Sbjct: 176 IDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E L RK D T IGPHR D V + I GS G+Q+ ++ + A Sbjct: 233 AEKELLIVLKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361 +I N G P+LLLD++ + LD +++ + + I Q +T T D + Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349 Query: 362 -AKFMRISNHQA 372 ++ ++N + Sbjct: 350 QSQLYLVNNGKI 361 >gi|187777364|ref|ZP_02993837.1| hypothetical protein CLOSPO_00920 [Clostridium sporogenes ATCC 15579] gi|187774292|gb|EDU38094.1| hypothetical protein CLOSPO_00920 [Clostridium sporogenes ATCC 15579] Length = 364 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 164/372 (44%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ Sbjct: 1 MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + ++ T+ E ++ DI+I + + +N + I+ + EL +L + Sbjct: 61 IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182 P RI RR+FLD + I+ + ++ + +++ RN L + Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+++ G I R + ++ L+ + +K ++ + K F Sbjct: 176 IDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E L RK D T IGPHR D V + I GS G+Q+ ++ + A Sbjct: 233 AEKELLIALKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361 +I N G P+LLLD++ + LD +++ + + I Q +T T D + Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQRFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349 Query: 362 -AKFMRISNHQA 372 ++ ++N + Sbjct: 350 QSQLYLVNNGKI 361 >gi|313122779|ref|YP_004033038.1| DNA replication and repair protein recf [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279342|gb|ADQ60061.1| DNA replication and repair protein recF [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 381 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ Sbjct: 1 MYLGRFKQSGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G FA + G + I L + + +N V + + HL Sbjct: 61 IAFGQD-----FASLAGRVHKRQLDIDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D I+P + + ++++ RN L D Sbjct: 116 FSPEDLELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQMLQQRNNYLKQLARRQASDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + Q+A ++ R + L+ E + + +L + K Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +K++ + + + T +GPHR DL K + S G+Q+ + + Sbjct: 236 DQPAQIKQKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +LI TG PILLLD++ + LD++++ AL + +Q F+T TD Sbjct: 295 SLKLAEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQTQTFITTTDLDGISQ 353 Query: 357 SLNETAKFMRISNHQAL 373 + + + I + Q + Sbjct: 354 EIVKQPRIFYIHSGQII 370 >gi|322804282|emb|CBZ01832.1| DNA recombination and repair protein RecF [Clostridium botulinum H04402 065] Length = 364 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ Sbjct: 1 MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + ++ T+ E ++ DI+I + + +N + I+ + EL +L + Sbjct: 61 IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182 P RI RR+FLD + I+ + ++ + +++ RN L + Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+++ G I R + ++ L+ + +K ++ + K F Sbjct: 176 IDVYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E RK D T IGPHR D V + I GS G+Q+ ++ + A Sbjct: 233 AEKELLMLFKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361 +I N G P+LLLD++ + LD +++ + + I Q +T T D + Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349 Query: 362 -AKFMRISNHQA 372 ++ ++N + Sbjct: 350 QSQLYLVNNGKI 361 >gi|37678197|ref|NP_932806.1| recombination protein F [Vibrio vulnificus YJ016] gi|51316312|sp|Q7MQJ5|RECF_VIBVY RecName: Full=DNA replication and repair protein recF gi|37196936|dbj|BAC92777.1| Recombinational DNA repair ATPase [Vibrio vulnificus YJ016] Length = 359 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 154/367 (41%), Gaps = 14/367 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + +G NG GKT++LEAI L GR F+ A V Sbjct: 1 MPLSRLIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECDQLFVHGRFLNSDQFELPIGINKQRDGTTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF +P F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R + + + S E + +E P + L + + + Sbjct: 177 YWDKEMARLAELISQWRADYVAQMQSKA-EQLCQEFLPEFHIQLKYYRGWEKETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + + D T+ GP+++DL + + + S G+ K+++ + LA Sbjct: 231 --YQQILEENFERDQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG + L+D+ ++ LD +R L + G+Q+F++ T+ + D +++ + Sbjct: 288 QHLTEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGR 347 Query: 364 FMRISNH 370 + Sbjct: 348 LFNVEQG 354 >gi|317046241|ref|YP_004113889.1| DNA replication and repair protein RecF [Pantoea sp. At-9b] gi|316947858|gb|ADU67333.1| DNA replication and repair protein RecF [Pantoea sp. At-9b] Length = 361 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIEQADLSLAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P+F R+EG E + + + VR I+ V EL + L + Sbjct: 61 IRHDQPAF-VLHGRIEGSERELAVGLTKNRAGESKVR---IDGSDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F P + RL++ RN L + S Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHAAPGFFNAWSNLRRLLKQRNAALRQ-VTRYSQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +A+ S I + P +L+ + + Sbjct: 176 PWDQELVPLAEQISAWRAEYSDAICSEITATCA-QFLPEFELAFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GPH++D + + S G+ K+++ + LA Sbjct: 229 -DYGELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ ++G + L+D+ ++ LD+ +R L + +Q+F++ + V D +E K Sbjct: 287 EYLTRSSGRRCLYLIDDFASELDDVRRRLLAERLKATQAQVFVSAIGVEHVIDMSDEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|323493783|ref|ZP_08098901.1| recombination protein F [Vibrio brasiliensis LMG 20546] gi|323311917|gb|EGA65063.1| recombination protein F [Vibrio brasiliensis LMG 20546] Length = 360 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 147/369 (39%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + V Sbjct: 1 MPLSRLIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNDCNELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF + F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRSFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R I + E Q P ++ L + D Sbjct: 177 YWDQEMARLAENISQWRATYIEQMKVKAEEICQA-FLPEFEIQLKYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YQDILEKNFERDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + G+Q+F++ TD + D +E + Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDSQIADMRDENGR 347 Query: 364 FMRISNHQA 372 + + Sbjct: 348 MFHVEHGTI 356 >gi|167548875|ref|ZP_02342634.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325712|gb|EDZ13551.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 357 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFFLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|308188763|ref|YP_003932894.1| DNA replication and repair protein recF [Pantoea vagans C9-1] gi|308059273|gb|ADO11445.1| DNA replication and repair protein recF [Pantoea vagans C9-1] Length = 361 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 149/369 (40%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIEQADLQLAPGFNFLVGVNGSGKTSVLEAIHTLGHGRSFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R+E E + + D VR I+ V EL + L + Sbjct: 61 IRHDEAAF-VLHGRLESKEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F P + RL++ RN L + S Sbjct: 117 ITPEGFSLLNGGPKYRRAYVDWGCFHNTPGFFNAWNNMRRLLKQRNAALRQ-VSRYSQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E A+S+ I + P +L + + Sbjct: 176 PWDQELVPLAEQISQWRAEYSAAISAEITATCA-QFLPEFELRFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T GPH++D + + S G+ K+++ + LA Sbjct: 229 -DYAELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363 +++ +G I L+D+ ++ LDE +R L + +Q+F++ V D +E K Sbjct: 287 EFLTSQSGRRCIYLIDDFASELDESRRRLLADRLKATQAQVFVSAISAGHVIDMTDEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|290548|gb|AAA62051.1| recF (CG Site No. 308) [Escherichia coli] Length = 357 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAXRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|89052494|ref|YP_507945.1| recombination protein F [Jannaschia sp. CCS1] gi|88862043|gb|ABD52920.1| DNA replication and repair protein RecF [Jannaschia sp. CCS1] Length = 375 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 127/368 (34%), Positives = 197/368 (53%), Gaps = 13/368 (3%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +++ + L +S FR++ R+ D + G NG GKTN++EA+S LSPGRG RRA+ Sbjct: 11 VSKVFVSSLALSHFRSHRRARMELDGRPVALFGPNGAGKTNLMEAVSLLSPGRGLRRAAA 70 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 ++ R + A + G DI++ E R Q++ + L + LR Sbjct: 71 EEIIRRPEAIGWKVSAEISGPSINHDITLTAEPG---QPRTTQVDGKTAPQIA-LARLLR 126 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I WLVPS DR++S + RRRFLDR+ + P H ++ +E+ MR RNRLL + D + Sbjct: 127 IVWLVPSQDRLWSEGAEGRRRFLDRITLSFLPDHADAVLTYEKAMRERNRLLRDDARDPA 186 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 W ++EAQMA+ V+I R + + +S + FP L G + C Sbjct: 187 WYRALEAQMADAAVRIVNGRDDALTRIS--AAQNGAATAFPAADL-------GIETEHPC 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +++ + R D + RTLIGPHR+D+ Y DK + STGEQK +L+ + L Sbjct: 238 QTVDDFIQAFEGSRPRDLAAGRTLIGPHRADMSAIYRDKGVPAKQCSTGEQKALLISLIL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 ++AR + TG AP++LLDE++AHLD +R ALF + + +Q +MTGT +F L + Sbjct: 298 SNARALKAETGTAPLVLLDEVAAHLDAGRRAALFDEICALEAQAWMTGTGPELFAELGDR 357 Query: 362 AKFMRISN 369 A+ I+ Sbjct: 358 AQHFEITE 365 >gi|310816809|ref|YP_003964773.1| recombination protein F [Ketogulonicigenium vulgare Y25] gi|308755544|gb|ADO43473.1| recombination protein F [Ketogulonicigenium vulgare Y25] Length = 370 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 135/370 (36%), Positives = 197/370 (53%), Gaps = 12/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L FD + FVG NG GKTN++EAIS LSPGRG RRA D+ Sbjct: 4 LALNALKLSHFRSHKRAELAFDGRPVAFVGSNGAGKTNLIEAISLLSPGRGLRRAVTEDL 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A + + ++ + R+VR I+D V L + I W Sbjct: 64 ARRPESVGWKVQASLTRLHESHEVETAAAPGESRTVR---IDDKPAPQVA-LAAIMPIVW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR++ + RRRFLDRMV + P H +++E+ MR RNRLL +G D+ W + Sbjct: 120 LVPAMDRLWIEAAEGRRRFLDRMVMSFAPDHAALALEYEKAMRQRNRLLKDGVRDAHWYA 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +IE MA+ G ++ R+ +I L + FP L+LT D++ Sbjct: 180 AIERIMAKSGAEMTRNRLALIERLRD--AQASADTAFPAADLTLTSEGPSPVDEA----- 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R D ++ R+L+GPHR+DL + K + A STGEQK +L+ + LA+ Sbjct: 233 -ALADALEGSRPRDLLAGRSLVGPHRADLSAIWQAKGMIAADCSTGEQKALLISLVLANG 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G APILLLDE+SAHLD +R AL+ +T + Q FMTGT+ +F L A+ Sbjct: 292 RALAEDRGVAPILLLDEVSAHLDAARRAALYDEITAMAGQTFMTGTEVQLFAGLGPRAQG 351 Query: 365 MRISNHQALC 374 + A Sbjct: 352 FAVEEGPAGS 361 >gi|163738136|ref|ZP_02145552.1| DNA replication and repair protein RecF [Phaeobacter gallaeciensis BS107] gi|161388752|gb|EDQ13105.1| DNA replication and repair protein RecF [Phaeobacter gallaeciensis BS107] Length = 365 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 130/366 (35%), Positives = 196/366 (53%), Gaps = 11/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L D + G NG GKTNILEA+S SPGRG RRAS AD+ Sbjct: 2 LALTTLTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + ++ ++ E R ++I++ +D L + R+ W Sbjct: 62 ARRPEALGWKLKGQLTAARQSYEVETWSEAG---KARQVKIDNKAASQID-LGQICRVVW 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MDR++ + RRRFLDR+V + DP H + +E+ MR RNRLL E D++W Sbjct: 118 LIPAMDRLWIEAAEGRRRFLDRIVLSFDPGHAEATLLYEKAMRERNRLLKEQIRDAAWYR 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +E QMAE G +I+ AR ++ L + + + FP +L L + D Sbjct: 178 VLETQMAESGHRIHAARTAAVDRLR--MAQEAAETAFPAAELEL-----IQSDGGLPDTA 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + + +GR D + RTL+GPHR+DL+ Y K + STGEQK +LV + LA+A Sbjct: 231 ADLQEAFEEGRFRDLAAGRTLLGPHRTDLLGTYAAKGVPARDCSTGEQKALLVSLILANA 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R + G PILLLDE+SAHLD +R AL++ + +G+Q +MTGT +FD A+ Sbjct: 291 RALIAEGGAPPILLLDEVSAHLDVIRRAALYQEIVTLGAQAWMTGTGPELFDEFEGRAQM 350 Query: 365 MRISNH 370 + + Sbjct: 351 FTVEDG 356 >gi|304398066|ref|ZP_07379941.1| DNA replication and repair protein RecF [Pantoea sp. aB] gi|304354352|gb|EFM18724.1| DNA replication and repair protein RecF [Pantoea sp. aB] Length = 361 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 148/369 (40%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIEQADLQLAPGFNFLVGANGSGKTSVLEAIHTLGHGRSFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R+E E + + D VR I+ V EL + L + Sbjct: 61 IRHDEAAF-VLHGRLENAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F P + RL++ RN L + S Sbjct: 117 ITPEGFSLLNGGPKYRRAYVDWGCFHNTPGFFNAWNNMRRLLKQRNAALRQ-VSRYSQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E A+S+ I + P +L + + Sbjct: 176 PWDQELVPLAEQISQWRAEYSAAISAEITATCS-QFLPEFELRFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GPH++D + + S G+ K+++ + LA Sbjct: 229 -DYGELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363 +++ +G I L+D+ ++ LDE +R L + +Q+F++ V D +E K Sbjct: 287 EFLTSQSGRRCIYLIDDFASELDESRRRLLADRLKATQAQVFVSAISAGHVIDMTDEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|170759251|ref|YP_001785339.1| recombination protein F [Clostridium botulinum A3 str. Loch Maree] gi|226737781|sp|B1L1K9|RECF_CLOBM RecName: Full=DNA replication and repair protein recF gi|169406240|gb|ACA54651.1| DNA replication and repair protein RecF [Clostridium botulinum A3 str. Loch Maree] Length = 364 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 88/375 (23%), Positives = 163/375 (43%), Gaps = 15/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ Sbjct: 1 MYIKSVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + ++ T+ E ++ DI+I + + +N + I+ + EL +L + Sbjct: 61 IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182 P RI RR+FLD + I+ + ++ + +++ RN L + Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNRINDI 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+++ G I R + ++ L+ + +K ++ + K F Sbjct: 176 IDVYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E RK D T IGPHR D V + I GS G+Q+ ++ + A Sbjct: 233 AEKELLMLFKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361 +I N G P LLLD++ + LD +++ + + I Q +T T D + Sbjct: 292 SLEIIKNIIGEYPALLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349 Query: 362 -AKFMRISNHQALCI 375 ++ ++N + + Sbjct: 350 QSQLYLVNNGKIKKV 364 >gi|254507276|ref|ZP_05119412.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus 16] gi|219549736|gb|EED26725.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus 16] Length = 360 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 79/369 (21%), Positives = 147/369 (39%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLTRLIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNDCNELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF + F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R + + S E Q P + L + + Sbjct: 177 YWDQEMARLAENISQWRSVYVEQMKSKAEEICQ-TFLPEFDIQLKYYRGWDKETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YQQILEKNFERDQALGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG + L+D+ ++ LD +R L + + G+Q+F++ T + D +E K Sbjct: 288 QHLTEMTGKQCVYLIDDFASELDSQRRERLADCLKETGAQVFVSSITQSQIADMADENGK 347 Query: 364 FMRISNHQA 372 + + Sbjct: 348 MFHVEHGTI 356 >gi|50123357|ref|YP_052524.1| recombination protein F [Pectobacterium atrosepticum SCRI1043] gi|81693014|sp|Q6CYR6|RECF_ERWCT RecName: Full=DNA replication and repair protein recF gi|49613883|emb|CAG77335.1| DNA replication and repair protein [Pectobacterium atrosepticum SCRI1043] Length = 361 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 152/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F R++G E + + + D VR I+ V EL + L I Sbjct: 61 IRHDQPEF-VLHGRIDGTETERAVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL R RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFAAWSNMKRLQRQRNAALRQ-VSHYGQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R + A+++ I + P LS + + Sbjct: 176 AWDQELVPLAERISEWRAQYSAAIANDIAATC-TQFLPEFSLSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D M T +GPH++D + A+ S G+ K+++ + LA Sbjct: 229 -EYAELLERQFERDRMLGYTALGPHKADFRIRTSGVAVEDML-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ G + L+D+ ++ LD +R L + +Q+F++ D + E K Sbjct: 287 EFLTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|238783050|ref|ZP_04627077.1| DNA replication and repair protein recF [Yersinia bercovieri ATCC 43970] gi|238716051|gb|EEQ08036.1| DNA replication and repair protein recF [Yersinia bercovieri ATCC 43970] Length = 361 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L + VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E + + + + D VR I+ V EL + L + Sbjct: 61 IRHDCAEF-VLHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R +A+++ I P LS + + Sbjct: 176 PWDQEIVPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T IGPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRALTYTAIGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|332084890|gb|EGI90073.1| DNA replication and repair protein recF [Shigella boydii 5216-82] Length = 357 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLIKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -KYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|116513232|ref|YP_812138.1| recombination protein F [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275997|sp|Q04CX2|RECF_LACDB RecName: Full=DNA replication and repair protein recF gi|116092547|gb|ABJ57700.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 381 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 155/377 (41%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ Sbjct: 1 MYLSRFKQSGFRNLAPLNLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G FA + G + + L + + +N V + + HL Sbjct: 61 IAFGQD-----FASLAGRVHKRQLDLDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D I+P + + +L++ RN L D Sbjct: 116 FSPEDMELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + Q+A ++ R + L+ E + + +L + K Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +K++ + + + T +GPHR DL K + S G+Q+ + + Sbjct: 236 DQPAQIKQKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + L+ +LI TG PILLLD++ + LD++++ AL + +Q F+T TD Sbjct: 295 SLKLSEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQTQTFITTTDLDSISQ 353 Query: 357 SLNETAKFMRISNHQAL 373 + + + I + Q + Sbjct: 354 EIVKQPRIFYIHSGQII 370 >gi|238754006|ref|ZP_04615365.1| DNA replication and repair protein recF [Yersinia ruckeri ATCC 29473] gi|238707758|gb|EEQ00117.1| DNA replication and repair protein recF [Yersinia ruckeri ATCC 29473] Length = 361 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L A VG NG GKT++LEA+ L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLAPAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F RV+ E + + + D VR I+ V EL + L + Sbjct: 61 IRHDCPEF-VLHGRVDSGERELSVGLSKSRQGDSKVR---IDGSDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R +A+++ I P LS + + Sbjct: 176 PWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + + S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|238797843|ref|ZP_04641335.1| DNA replication and repair protein recF [Yersinia mollaretii ATCC 43969] gi|238718259|gb|EEQ10083.1| DNA replication and repair protein recF [Yersinia mollaretii ATCC 43969] Length = 361 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L + VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E + + + + D VR I+ V EL + L + Sbjct: 61 IRHDCAEF-VLHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R +A+++ I P LS + + Sbjct: 176 PWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T IGPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRALTYTAIGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|37524035|ref|NP_927379.1| recombination protein F [Photorhabdus luminescens subsp. laumondii TTO1] gi|51316319|sp|Q7NAD1|RECF_PHOLL RecName: Full=DNA replication and repair protein recF gi|36783458|emb|CAE12298.1| DNA replication and repair protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 363 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 156/369 (42%), Gaps = 13/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN A+ L VG NG GKT++LEAI L GR FR V Sbjct: 1 MTLTRLLIRDFRNIAAADLPLATGFNFLVGSNGSGKTSVLEAIYTLGHGRSFRSIQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F R+ E + SI L + + ++I+ + EL K L + Sbjct: 61 ILHGCDEF-VLHGRLGQQENERERSIGLSKNRNGDSK-VRIDGSDGGKIAELAKMLPMQL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR F+D F +PR ++ +RL++ RN L + S Sbjct: 119 ITPEGFTLLNGGPKYRRAFIDWGCFHNEPRFFSAWVNLKRLLKQRNAALRQ-VTRYSQIR 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +IN R E + ++ I K+ P LS + + Sbjct: 178 PWDQELIPLANQINQWRGEYVTNITQDITNTC-KQFLPEFTLSFSFQQGWDKES------ 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T GPH++DL + + S G+ K+++ + LA Sbjct: 231 -DYAELLERQFERDRTLTYTASGPHKADLRIRAEGTPVEDML-SRGQLKLLMCALRLAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 + +G + LLD+ ++ LD +R L + +Q+F++ + D L+ +K Sbjct: 289 EYFTRQSGQQCLYLLDDFASELDTSRRQLLAARLKSTQAQVFVSAINPDQITDMLDGNSK 348 Query: 364 FMRISNHQA 372 R+ N + Sbjct: 349 MFRVENGKI 357 >gi|85705683|ref|ZP_01036780.1| recombination protein F [Roseovarius sp. 217] gi|85669673|gb|EAQ24537.1| recombination protein F [Roseovarius sp. 217] Length = 369 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 201/368 (54%), Gaps = 11/368 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +S FR++ + RL DA+ G NG GKTN++EA+S LSPGRG RRA+ D+ R Sbjct: 6 LSELTLSHFRSHKAARLSLDARPVAIHGPNGAGKTNLIEAVSLLSPGRGLRRAAAQDMAR 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + + + ++ E + R L+I+ + L + R+ WLV Sbjct: 66 RPEALGWKITTILHSLHQVHEVETFAE---GSAARQLRIDGKTATQIA-LGRIARVLWLV 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P+MDR++ + RRRFLDRM + P H + +E+ MR RNRLL + D+ W ++ Sbjct: 122 PAMDRLWIEGAEGRRRFLDRMTMSFVPSHAEATLAYEKAMRERNRLLKDQVRDAQWYLAL 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E Q+A+ G +I+ R + ++ + + FP +L LT + + E+ Sbjct: 182 ERQLADAGAEIHANRQHALALIAG--AQMQAETAFPTAELELT-----QTEGEMPETAED 234 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + L + R D ++ RTLIGPHR+DL Y K + A STGEQK +LV + LA+AR Sbjct: 235 LRQALAESRFRDLVAGRTLIGPHRADLYGVYAAKGVPAADCSTGEQKALLVSLILANARA 294 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 ++ G P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F L + A+ + Sbjct: 295 LARDFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFSELGDRAQHIH 354 Query: 367 ISNHQALC 374 +++ + Sbjct: 355 VTDTAGIS 362 >gi|238787826|ref|ZP_04631623.1| DNA replication and repair protein recF [Yersinia frederiksenii ATCC 33641] gi|238724169|gb|EEQ15812.1| DNA replication and repair protein recF [Yersinia frederiksenii ATCC 33641] Length = 361 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L + VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E + + + + D VR I+ V EL + L + Sbjct: 61 IRHECAEF-VLHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + + Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|204928659|ref|ZP_03219858.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322092|gb|EDZ07290.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 357 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|82546036|ref|YP_409983.1| recombination protein F [Shigella boydii Sb227] gi|97180953|sp|Q31UV3|RECF_SHIBS RecName: Full=DNA replication and repair protein recF gi|81247447|gb|ABB68155.1| RecF [Shigella boydii Sb227] gi|320185535|gb|EFW60301.1| DNA recombination and repair protein RecF [Shigella flexneri CDC 796-83] gi|332089378|gb|EGI94482.1| DNA replication and repair protein recF [Shigella boydii 3594-74] Length = 357 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELIPLVEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|291615641|ref|YP_003518383.1| RecF [Pantoea ananatis LMG 20103] gi|291150671|gb|ADD75255.1| RecF [Pantoea ananatis LMG 20103] gi|327395907|dbj|BAK13329.1| DNA replication and repair protein RecF [Pantoea ananatis AJ13355] Length = 361 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIEQADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R+EG E + + + VR I+ V EL + L + Sbjct: 61 IRHDQAAF-VLHGRLEGQEREFSVGLSKNRAGESKVR---IDGSDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR ++D F P + RL++ RN L + S Sbjct: 117 ITPEGFTLLNGGPKYRRAYVDWGCFHNTPGFFNAWSNLRRLLKQRNAALRQ-VTRYSQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R + A+S+ I+ + P L + + Sbjct: 176 PWDQELVPLAEQISQWRADYSAAISAEIV-TTCAQFLPEFDLRFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T GPH++D + + S G+ K+++ + LA Sbjct: 229 -DYAELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + +Q+F++ D +E K Sbjct: 287 EFLTRQSGRRCVYLIDDFASELDDSRRRLLAERLKATQAQVFVSAISSEHVIDMTDEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|92115636|ref|YP_575365.1| recombination protein F [Nitrobacter hamburgensis X14] gi|91798530|gb|ABE60905.1| DNA replication and repair protein RecF [Nitrobacter hamburgensis X14] Length = 379 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 140/371 (37%), Positives = 207/371 (55%), Gaps = 4/371 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I+ L+++ FRNY + L + + VG NG GKTN LEAIS LSPGRG RRA+ +V Sbjct: 5 RIRRLSLTHFRNYRAAALETRSDVVVLVGPNGAGKTNCLEAISLLSPGRGLRRATREEVA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIRVVDELNKHLRI 122 ++ A VEG GLA + ++ S R +I+ HLR+ Sbjct: 65 DHRGDGSWAVSAEVEGALGLATLGTGIDAPGSDAASSGRRCRIDREPAGSAAAFGDHLRM 124 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL PSMD +F G + ERRRF DR+V AID H R+ ER +R RNRLL D W Sbjct: 125 VWLTPSMDGLFGGAASERRRFFDRLVLAIDSDHSGRVSALERSLRSRNRLLETRNSDDHW 184 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 C ++E Q AEL V + R + + L++ + FP ++ L G+++ + Sbjct: 185 CDAVERQTAELAVAVAAMRAQTVTRLAAALEARGAASAFPSARIGLDGWMENALLTEPAT 244 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y + L R D+ + RTL GPH +DL V Y K++ STGEQK +L+G+ L Sbjct: 245 AVEDRYREILRANRARDAAAGRTLDGPHLTDLEVIYAPKSMPARDASTGEQKALLIGLVL 304 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHA L++ TG AP+LLLDE+ AHLD D+R ALF + +G+Q++M+G D + F ++ Sbjct: 305 AHAGLVAEMTGIAPLLLLDEVVAHLDPDRRGALFGELKGLGAQVWMSGADPAAFANVGAG 364 Query: 362 AKFMRISNHQA 372 ++ + + Sbjct: 365 SEIFDVDAGRI 375 >gi|150260970|ref|ZP_01917698.1| DNA metabolism protein [Yersinia pestis CA88-4125] gi|161484720|ref|NP_671402.2| recombination protein F [Yersinia pestis KIM 10] gi|161511283|ref|NP_995265.2| recombination protein F [Yersinia pestis biovar Microtus str. 91001] gi|161760551|ref|YP_072416.2| recombination protein F [Yersinia pseudotuberculosis IP 32953] gi|162421418|ref|YP_001608446.1| recombination protein F [Yersinia pestis Angola] gi|165926115|ref|ZP_02221947.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. F1991016] gi|165936903|ref|ZP_02225469.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. IP275] gi|166009709|ref|ZP_02230607.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. E1979001] gi|166213283|ref|ZP_02239318.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. B42003004] gi|167422826|ref|ZP_02314579.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425451|ref|ZP_02317204.1| DNA replication and repair protein recF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022265|ref|YP_001718770.1| recombination protein F [Yersinia pseudotuberculosis YPIII] gi|218931072|ref|YP_002348947.1| recombination protein F [Yersinia pestis CO92] gi|229839802|ref|ZP_04459961.1| gap repair protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841887|ref|ZP_04462043.1| gap repair protein [Yersinia pestis biovar Orientalis str. India 195] gi|229896764|ref|ZP_04511927.1| gap repair protein [Yersinia pestis Pestoides A] gi|229904652|ref|ZP_04519763.1| gap repair protein [Yersinia pestis Nepal516] gi|270488363|ref|ZP_06205437.1| DNA replication and repair protein RecF [Yersinia pestis KIM D27] gi|294505623|ref|YP_003569685.1| recombination protein F [Yersinia pestis Z176003] gi|20978599|sp|Q8Z9U9|RECF_YERPE RecName: Full=DNA replication and repair protein recF gi|97181121|sp|Q663T4|RECF_YERPS RecName: Full=DNA replication and repair protein recF gi|226737852|sp|A9R5R3|RECF_YERPG RecName: Full=DNA replication and repair protein recF gi|226737853|sp|B1JGD5|RECF_YERPY RecName: Full=DNA replication and repair protein recF gi|115349683|emb|CAL22664.1| DNA metabolism protein [Yersinia pestis CO92] gi|149290378|gb|EDM40455.1| DNA metabolism protein [Yersinia pestis CA88-4125] gi|162354233|gb|ABX88181.1| DNA replication and repair protein recF [Yersinia pestis Angola] gi|165915145|gb|EDR33756.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. IP275] gi|165921975|gb|EDR39152.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. F1991016] gi|165991631|gb|EDR43932.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. E1979001] gi|166205581|gb|EDR50061.1| DNA replication and repair protein recF [Yersinia pestis biovar Antiqua str. B42003004] gi|166958218|gb|EDR55239.1| DNA replication and repair protein recF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055465|gb|EDR65258.1| DNA replication and repair protein recF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748799|gb|ACA66317.1| DNA replication and repair protein RecF [Yersinia pseudotuberculosis YPIII] gi|229678770|gb|EEO74875.1| gap repair protein [Yersinia pestis Nepal516] gi|229691226|gb|EEO83279.1| gap repair protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696168|gb|EEO86215.1| gap repair protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700202|gb|EEO88238.1| gap repair protein [Yersinia pestis Pestoides A] gi|262363787|gb|ACY60508.1| recombination protein F [Yersinia pestis D106004] gi|262367724|gb|ACY64281.1| recombination protein F [Yersinia pestis D182038] gi|270336867|gb|EFA47644.1| DNA replication and repair protein RecF [Yersinia pestis KIM D27] gi|294356082|gb|ADE66423.1| recombination protein F [Yersinia pestis Z176003] gi|320017425|gb|ADW00997.1| gap repair protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 361 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L A VG NG GKT++LEA+ L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E A + + + D VR I+ V EL + L + Sbjct: 61 IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + + Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLARQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|323496929|ref|ZP_08101957.1| recombination protein F [Vibrio sinaloensis DSM 21326] gi|323318003|gb|EGA70986.1| recombination protein F [Vibrio sinaloensis DSM 21326] Length = 360 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 146/369 (39%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLTRLIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + L + L + Sbjct: 61 IQNDCNELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAHLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF + F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTASSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R + + S E Q P + L + D Sbjct: 177 YWDQEMARLAENISQWRSIYVEQMKSKAEEICQ-TFLPEFDIQLKYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YQQILEKNFERDQSLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + G+Q+F++ T V D +E K Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRERLAECLKETGAQVFVSSITQSQVADMADENGK 347 Query: 364 FMRISNHQA 372 + + Sbjct: 348 MFHVEHGTI 356 >gi|156936080|ref|YP_001439996.1| recombination protein F [Cronobacter sakazakii ATCC BAA-894] gi|260595832|ref|YP_003208403.1| recombination protein F [Cronobacter turicensis z3032] gi|166220710|sp|A7MMZ8|RECF_ENTS8 RecName: Full=DNA replication and repair protein recF gi|156534334|gb|ABU79160.1| hypothetical protein ESA_03974 [Cronobacter sakazakii ATCC BAA-894] gi|260215009|emb|CBA26672.1| DNA replication and repair protein recF [Cronobacter turicensis z3032] Length = 357 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E + + + D +VR I+ V EL + + + Sbjct: 61 IRHEQDAFI-LHGRLQGDEREVSVGLTKDRNGDSTVR---IDGSDGHKVAELAQLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G RR FLD F +P + +RL++ RN L + Sbjct: 117 ITPEGFTLLGGGPKYRRAFLDWGCFHNEPGFFVAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R A+++ + + + P L+ + + + Sbjct: 176 PWDRELVPLAEQISQWRASYSEAIANDMADTCA-QFLPEFSLTFSFQRGWEKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L G + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERGFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + + SQ+F++ D ++ +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLAQRLKATQSQVFVSAISAEHILDMTDKNSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFAVDQGKI 355 >gi|153947001|ref|YP_001403093.1| recombination protein F [Yersinia pseudotuberculosis IP 31758] gi|166918727|sp|A7FPB5|RECF_YERP3 RecName: Full=DNA replication and repair protein recF gi|152958496|gb|ABS45957.1| DNA replication and repair protein recF [Yersinia pseudotuberculosis IP 31758] Length = 361 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L A VG NG GKT++LEA+ L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E A + + + D VR I+ V EL + L + Sbjct: 61 IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + + Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|302559663|ref|ZP_07312005.1| RecF protein [Streptomyces griseoflavus Tu4000] gi|302477281|gb|EFL40374.1| RecF protein [Streptomyces griseoflavus Tu4000] Length = 373 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 165/379 (43%), Gaps = 20/379 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYPRVEVPLGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE R+ R +R D L +R Sbjct: 61 VRMGADRAI---VRAQVRQGERQQLVELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALIKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 D S + +A G ++ R+++I AL L + ++ L+L Sbjct: 177 RTLDLSTLDVWDQHLAHAGAELLARRLDLIGALQPLADKAYEQLAPGGGPLTLEYKPSAP 236 Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + L E+ L + RK + TL+GPHR DL++ + + S GE Sbjct: 237 GEADTREDLFEQLMAALAEARKQEIERGVTLVGPHRDDLLLKL-GRLPAKGYASHGESWS 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 296 YALALRLASYDLLRAE-GNEPVLVLDDVFAELDTRRRERLAELVA-PGEQVLVTAAVDDD 353 Query: 354 VFDSLNETAKFMRISNHQA 372 V L T ++ Sbjct: 354 VPHVLAGT--RFTVAEGTV 370 >gi|238793145|ref|ZP_04636773.1| DNA replication and repair protein recF [Yersinia intermedia ATCC 29909] gi|238727518|gb|EEQ19044.1| DNA replication and repair protein recF [Yersinia intermedia ATCC 29909] Length = 370 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L A VG NG GKT++LEAI L GR FR V Sbjct: 10 MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 69 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E + I + + D VR I+ V EL + L + Sbjct: 70 IRHECAEF-VLHGRVDVNERESSIGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQL 125 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 126 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 184 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R +A+++ I P LS + + Sbjct: 185 PWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 237 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T IGPH++D + + S G+ K+++ + LA Sbjct: 238 -DYGELLERQFERDRALTYTAIGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 295 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 296 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 355 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 356 MFRVEHGKI 364 >gi|126734080|ref|ZP_01749827.1| DNA replication and repair protein RecF, putative [Roseobacter sp. CCS2] gi|126716946|gb|EBA13810.1| DNA replication and repair protein RecF, putative [Roseobacter sp. CCS2] Length = 366 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 133/371 (35%), Positives = 192/371 (51%), Gaps = 15/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + DA+ G NG GKTN+LEA S LSPGRG RRA D+ Sbjct: 4 LALTELTLSHFRSHKRAAITLDARPLAIFGPNGAGKTNVLEAASLLSPGRGLRRAGADDL 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + A ++ + +I E + R +R D L + RI W Sbjct: 64 TRRPEALGWKITAILQSLHQTHEIETWAEAGNPRQLRI----DGKAAPQTALGRIARILW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVPSMDR++ + RRRFLDR + +P H ++ +++ MR RNRLL + D W + Sbjct: 120 LVPSMDRLWIEGAEGRRRFLDRATLSFEPTHAEAVLTYDKAMRERNRLLKDMVRDPHWYT 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +IE QMAE G I R I L++ + FP L+LT S + Sbjct: 180 AIEGQMAEAGAAIQKNRHRAIAELTT--AQEAATTAFPTAMLTLT---------SAEPIP 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L D R D + RTLIGPHR+DL + DK + STGEQK +L+ + LA+ Sbjct: 229 DNLQTALADNRNRDMAAGRTLIGPHRADLDAVFADKGVPAKDCSTGEQKALLISLILANG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G PILLLDE++AHLD +R AL+ + +G+Q FMTGT +F L A++ Sbjct: 289 RALARDFGAPPILLLDEVAAHLDAARRAALYDEICSLGAQAFMTGTGAELFAELGRRAQY 348 Query: 365 MRISNHQALCI 375 + ++ I Sbjct: 349 VEVTETDGQSI 359 >gi|322617251|gb|EFY14156.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619061|gb|EFY15947.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625128|gb|EFY21956.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630179|gb|EFY26950.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634395|gb|EFY31129.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635280|gb|EFY31995.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642909|gb|EFY39492.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647624|gb|EFY44111.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650570|gb|EFY46977.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656404|gb|EFY52696.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661584|gb|EFY57807.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661665|gb|EFY57884.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668221|gb|EFY64379.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672850|gb|EFY68958.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674969|gb|EFY71055.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683659|gb|EFY79672.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687735|gb|EFY83704.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192050|gb|EFZ77285.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200532|gb|EFZ85610.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204958|gb|EFZ89943.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206701|gb|EFZ91658.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211773|gb|EFZ96606.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218635|gb|EGA03342.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220036|gb|EGA04506.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224806|gb|EGA09071.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232485|gb|EGA16587.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235260|gb|EGA19345.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241048|gb|EGA25085.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241402|gb|EGA25434.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248633|gb|EGA32563.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252068|gb|EGA35928.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258628|gb|EGA42291.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262341|gb|EGA45899.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268177|gb|EGA51653.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270591|gb|EGA54036.1| recombination protein F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 357 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|312882233|ref|ZP_07741979.1| recombination protein F [Vibrio caribbenthicus ATCC BAA-2122] gi|309370077|gb|EFP97583.1| recombination protein F [Vibrio caribbenthicus ATCC BAA-2122] Length = 360 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 81/369 (21%), Positives = 153/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + V Sbjct: 1 MPLSRLIIQQFRNIKACDIELSAGFNFLIGVNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G F + + I I + V+ I + + +L + L + Sbjct: 61 IQNGCDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF + F+RL + RN LL S Sbjct: 118 IHPEGFDLLTEGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTARH-YHELS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R + + + P + L+ + + + Sbjct: 177 YWDNEMAVLAENISQWREAYVEQMKKKAQQICGA-FLPEFDIQLSYYRGWEKETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YQEILKNNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + +++ TG I L+D+ ++ LD +R L + + G+Q+F++ TD+ + D +E K Sbjct: 288 QHLTDVTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDQQIADMRDENGK 347 Query: 364 FMRISNHQA 372 R+ + Sbjct: 348 MFRVEHGTI 356 >gi|163743746|ref|ZP_02151120.1| recombination protein F [Phaeobacter gallaeciensis 2.10] gi|161383007|gb|EDQ07402.1| recombination protein F [Phaeobacter gallaeciensis 2.10] Length = 365 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 130/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L D + G NG GKTNILEA+S SPGRG RRAS AD+ Sbjct: 2 LALTTLTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + ++ ++ E R ++I++ +D L + R+ W Sbjct: 62 ARRPEALGWKLKGQLTVARQSYEVETWSEAG---KARQVKIDNKAASQID-LGQICRVVW 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MDR++ + RRRFLDR+V + DP H + +E+ MR RNRLL E D+ W Sbjct: 118 LIPAMDRLWIEAAEGRRRFLDRIVLSFDPGHAEATLLYEKAMRERNRLLKEQIRDAGWYR 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +E QMAE G +I+ AR ++ L + + + FP +L L + D Sbjct: 178 VLETQMAESGHRIHAARTAAVDRLR--MAQEAAETAFPAAELEL-----IQSDGGLPDTA 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + + +GR D + RTL+GPHR+DL+ Y K + STGEQK +LV + LA+A Sbjct: 231 ADLQEAFEEGRFRDLAAGRTLLGPHRTDLLGTYAAKGVPARDCSTGEQKALLVSLILANA 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R + G PILLLDE+SAHLD +R AL++ + +G+Q +MTGT +FD A+ Sbjct: 291 RALIAEGGAPPILLLDEVSAHLDVIRRAALYQEIVTLGAQAWMTGTGPELFDEFEGRAQM 350 Query: 365 MRISNH 370 + + Sbjct: 351 FTVEDG 356 >gi|295425412|ref|ZP_06818110.1| recombination protein F [Lactobacillus amylolyticus DSM 11664] gi|295064914|gb|EFG55824.1| recombination protein F [Lactobacillus amylolyticus DSM 11664] Length = 375 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 157/376 (41%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + +RN + FD+ IF+G N GKTN+LEAI FL+ R R +S ++ Sbjct: 1 MYLDHFIVQNYRNLEKIDTNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTSSDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ +A + G + + + L + + + IN V + + L Sbjct: 61 IHFGND-----YANLMGHVHKSQVDLDLRVLITKKGKKVWINRVEQAKLSKYVGQLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D+ I+ + + +++ +N L + D Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLFQKNNYLKQLAKGQAKDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---FD 237 + + Q+A + ++ R + + LS + + + KL++ D Sbjct: 176 IFLDVLSDQLAGIAAEVISRRFKFLRYLSHSASDAYEHISLASEKLAIAYHPSVSNITGD 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + + + ++M+ TL GPHR D+ K + + S G+Q+ + + Sbjct: 236 DNTETIYHKVLNNFQKTKEMEIRKGTTLSGPHRDDIEFKLDGKDAHL-YASQGQQRSIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 I LA +L+ + T P+LLLD++ + LD ++ AL + +Q F+T TD Sbjct: 295 SIKLAEIQLVHHLTDEYPLLLLDDVMSELDHGRQRALLNYI-HGKTQTFITTTDLEGISW 353 Query: 357 SLNETAKFMRISNHQA 372 + + + I + + Sbjct: 354 EIIKQPRIYHIQSGKI 369 >gi|300721092|ref|YP_003710360.1| gap repair protein [Xenorhabdus nematophila ATCC 19061] gi|297627577|emb|CBJ88096.1| gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction [Xenorhabdus nematophila ATCC 19061] Length = 363 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 13/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN A+ L VG NG GKT+ILEAI L GR FR V Sbjct: 1 MILSRLLIRDFRNIANADLPLATGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSIQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F R++ +S+ L ++ + ++I+ + EL K L + Sbjct: 61 IRHDCEEFI-LHGRLDQQFHERSLSVGLS-KNRQGGSQVRIDGSDGHKIAELAKMLPMQL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR F+D F +PR + +RL++ RN L + + Sbjct: 119 ITPEGFTLLNGGPKYRRAFIDWGCFHNEPRFFMAWGNLKRLLKQRNAALRQ-VTRYNQIQ 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R E I +S I E K+ P LS++ + Sbjct: 178 HWDRELAPLATEISQWRAEYIAGISEDI-ERTCKQFLPEFTLSISFQQGWDKES------ 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D S G+ K+++ + LA Sbjct: 231 -EYAELLARQFERDRSLTYTASGPHKADLRIR-ADGTPVEDMLSRGQLKLLMCALRLAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + +G + LLD+ ++ LD +R L + +Q+F++ T V D ++ ++ Sbjct: 289 EYFTRQSGQKCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAITSGQVTDMIDVNSR 348 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 349 MFRVEDGKI 357 >gi|325685103|gb|EGD27234.1| recombination protein F [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 381 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 154/377 (40%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ Sbjct: 1 MYLGRFKQSGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G FA + G + + L + + +N V + + HL Sbjct: 61 IAFGQD-----FASLAGRVHKRQLDLDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D I+P + + +L++ RN L D Sbjct: 116 FSPEDLELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + Q+A ++ R + L+ E + + +L + K Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +K++ + + + T +GPHR DL K + S G+Q+ + + Sbjct: 236 DQPAQIKQKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +LI TG PILLLD++ + LD++++ AL + Q F+T TD Sbjct: 295 SLKLAEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQIQTFITTTDLDGISQ 353 Query: 357 SLNETAKFMRISNHQAL 373 + + + I + Q + Sbjct: 354 EIVKQPRIFYIHSGQII 370 >gi|256389236|ref|YP_003110800.1| DNA replication and repair protein RecF [Catenulispora acidiphila DSM 44928] gi|256355462|gb|ACU68959.1| DNA replication and repair protein RecF [Catenulispora acidiphila DSM 44928] Length = 381 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 177/385 (45%), Gaps = 24/385 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++++FR+YASL + T FVG NG GKTN++EAI +++ R A+ + Sbjct: 1 MRVTHLSLADFRSYASLDVALGGGVTAFVGPNGQGKTNLVEAIGYIATLDSHRVATDQPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+P A VE + I+L R +N + E+ LR Sbjct: 61 VRFGAPRAI-VRANVEREGRTQLVEIELNPGGANRAR---LNRNPVPRPREVLGVLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLVARWPRFAGVRADYDRVLKQRNTLLRTAAMARRNKA 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFLDG 234 + S + + +A G ++ AR+ +I+ALS L+ + YV+ ++ + Sbjct: 177 SGPNISTLDAWDHHLALAGAELVAARLALISALSPLVDKCYVEIAEGGQTRIGYRSTISA 236 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY----CDKAITIAHGSTG 290 + D + AL E++ L + R + TL+GPHR +++++ D + S G Sbjct: 237 EPDPTAAALTEQFMTALGEARANELDRGITLVGPHRDEMVLELTSSSGDNMPARGYASHG 296 Query: 291 EQKVVLVGIFLAHARLISN--TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 E + + LA L+ + + G P+L+LD++ A LD +R L V+ Q+ +T Sbjct: 297 ESWSYALALRLAAYDLLRSDGSDGGEPVLILDDVFAELDAKRRRRLAERVSGAD-QVLIT 355 Query: 349 -GTDKSVFDSLNETAKFMRISNHQA 372 D V + L + +++ Q Sbjct: 356 AAVDADVPEQL--IGQKFTVADGQV 378 >gi|16767121|ref|NP_462736.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992429|ref|ZP_02573527.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242055|ref|ZP_02666987.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194445873|ref|YP_002043086.1| recombination protein F [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450242|ref|YP_002047869.1| recombination protein F [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200387747|ref|ZP_03214359.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|20141706|sp|P24900|RECF_SALTY RecName: Full=DNA replication and repair protein recF gi|226737830|sp|B4TAU7|RECF_SALHS RecName: Full=DNA replication and repair protein recF gi|226737831|sp|B4SYA6|RECF_SALNS RecName: Full=DNA replication and repair protein recF gi|16422409|gb|AAL22695.1| gap repair protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194404536|gb|ACF64758.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408546|gb|ACF68765.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199604845|gb|EDZ03390.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205329422|gb|EDZ16186.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338680|gb|EDZ25444.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261248977|emb|CBG26834.1| recF protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996121|gb|ACY91006.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160369|emb|CBW19894.1| recF protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914966|dbj|BAJ38940.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225554|gb|EFX50609.1| DNA recombination and repair protein RecF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132197|gb|ADX19627.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990686|gb|AEF09669.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 357 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++ E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQSEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|283836133|ref|ZP_06355874.1| hypothetical protein CIT292_10554 [Citrobacter youngae ATCC 29220] gi|291068322|gb|EFE06431.1| DNA replication and repair protein RecF [Citrobacter youngae ATCC 29220] Length = 357 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R SF R++G E I + + D VR I+ V EL + + Sbjct: 61 IRHEQESF-VLHGRLQGEERETSIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E ++ + + Q + P LS + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLSFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|83855144|ref|ZP_00948674.1| recombination protein F [Sulfitobacter sp. NAS-14.1] gi|83842987|gb|EAP82154.1| recombination protein F [Sulfitobacter sp. NAS-14.1] Length = 365 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 199/367 (54%), Gaps = 14/367 (3%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + + + L +S FR++ + DA+ G NG GKTNILEA+S LSPGRG RR+S + Sbjct: 2 SGLYLSQLTLSHFRSHKRAVIHCDARPVSIFGPNGAGKTNILEAVSLLSPGRGLRRSSAS 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D+TR + A + + + ++ I E R VR D L + R+ Sbjct: 62 DMTRRPEALGWKITAHLHSLGQIHEVEIWSEAGAARQVRI----DGKATAQTGLGRIARV 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL+PSMDR++ + RRRFLDRM + P H + + +E+ MR RNRLL + + SW Sbjct: 118 LWLIPSMDRLWIEGAEGRRRFLDRMTLSFLPDHADQSLAYEKAMRERNRLLKDMVREPSW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++E QMAE G I+ RV + A++ + + FP L L Sbjct: 178 YVALEQQMAEAGSAIHANRVAALQAITE--AQAQAETAFPTATLDLIC--------DMPP 227 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E + L D R D + RTLIGPHR+DL Y K + STGEQK +LV + LA Sbjct: 228 TAEGLRQALADNRMRDLSAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +AR ++ G P+LLLDE++AHLD D+R AL+ ++ +G+Q +MTGT + +FD+L A Sbjct: 288 NARALAADFGAPPLLLLDEVAAHLDADRRAALYDELSALGAQAWMTGTGEELFDTLGPRA 347 Query: 363 KFMRISN 369 + + ++ Sbjct: 348 QRLEVTE 354 >gi|163733264|ref|ZP_02140708.1| recombination protein F [Roseobacter litoralis Och 149] gi|161393799|gb|EDQ18124.1| recombination protein F [Roseobacter litoralis Och 149] Length = 366 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 140/363 (38%), Positives = 203/363 (55%), Gaps = 11/363 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L IS FR++ RL+ DA+ G NG GKTN+LEA+S LSPGRG RRAS D+ Sbjct: 3 LHLTELMISHFRSHRVARLMVDARPVALFGPNGAGKTNVLEAVSLLSPGRGLRRASAQDM 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + A+V + +I E + + R ++IN L + R+ W Sbjct: 63 TRRPEALGWKVSAQVTSLGQSQEIETWSE---EGAARQVKINSKTA-AQTALGRVSRVLW 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+PSMDR++ + RRRFLDRM + +P H + +E+ MR RNRLL + SW Sbjct: 119 LIPSMDRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAMRERNRLLKNMVREPSWYQ 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E QMA+ GV I+ R + L+ + FP +L L + + Sbjct: 179 ALEVQMAQAGVVIDQNRRMALRQLA--AAQLDATTAFPAAELEL-----IHNEAPLPEGE 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 D R D + RTLIGPHR+DLI Y K + STGEQK +LV + LA+A Sbjct: 232 STLRDAFADSRSRDLAAGRTLIGPHRADLIGTYRAKGVAAKDCSTGEQKALLVSLILANA 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ +G AP+LLLDE++AHLD D+R AL+ +T +G+Q +MTGT+KS+FD+L + A++ Sbjct: 292 RALAQESGAAPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTEKSLFDTLGDDAQY 351 Query: 365 MRI 367 I Sbjct: 352 FEI 354 >gi|332163519|ref|YP_004300096.1| recombination protein F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667749|gb|ADZ44393.1| recombination protein F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861743|emb|CBX71917.1| DNA replication and repair protein recF [Yersinia enterocolitica W22703] Length = 361 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L + VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E + + + + D VR I+ V EL + L + Sbjct: 61 IRHECAEF-VLHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + + Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|256848503|ref|ZP_05553945.1| DNA replication and repair protein RecF [Lactobacillus coleohominis 101-4-CHN] gi|256714770|gb|EEU29749.1| DNA replication and repair protein RecF [Lactobacillus coleohominis 101-4-CHN] Length = 374 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 157/373 (42%), Gaps = 14/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ +++ FRNY L++VF I +G+N GKTN+LEAI L+ + R + ++ Sbjct: 1 MILQEMHLKHFRNYDELKVVFSPGINILIGENAQGKTNLLEAIHVLALTKSHRTSKDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + G + LE + + + +++N + + +L + Sbjct: 61 IQWKHKQAF-----LSGKVQKQVERVPLEIQLAQGGKRVKVNHLYQSRLSAYVGNLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G+ RR+F++ + + + + L++ RN+ L + D Sbjct: 116 FAPEDLALVKGVPQVRRQFMNMEFGQMSSAYLYNVSHYHSLLQQRNQYLKQLRSGEQTDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238 I Q+A+ G I +AR ++ L + + +L L D+ Sbjct: 176 VLLGVISDQLAQDGAAIVLARFRLLKQLEKWAQRLHEHISLQKEQLRLKYVTQLTIDEQT 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + L+ + K D + + TL GP R D+ + + GS G+Q+ + Sbjct: 236 TRENLETQLRKLFDDNLEREIALGTTLAGPQRDDIHFIVNGQNV-QHFGSQGQQRTTALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357 + LA L+ TG P+LLLD++ + LD+D++ L + D Q F+T T S Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQDK-VQTFLTTTSLSGVARQ 353 Query: 358 LNETAKFMRISNH 370 L + +I Sbjct: 354 LIKQPTIFKIVGG 366 >gi|261250637|ref|ZP_05943212.1| DNA recombination and repair protein RecF [Vibrio orientalis CIP 102891] gi|260939206|gb|EEX95193.1| DNA recombination and repair protein RecF [Vibrio orientalis CIP 102891] Length = 360 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 80/369 (21%), Positives = 148/369 (40%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + V Sbjct: 1 MPLSRLIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECNELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF + F+RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRSFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +MA L I+ R + + + Q E P + L + + Sbjct: 177 YWDQEMARLAENISQWRATYVEQMKLKAEQICQ-EFLPEFDIQLKYYRGWDKETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YQEILEKNFERDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + + G+Q+F++ TD + D +E + Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDSQIADMRDENGR 347 Query: 364 FMRISNHQA 372 + + Sbjct: 348 MFHVEHGTI 356 >gi|258622960|ref|ZP_05717975.1| recF protein [Vibrio mimicus VM573] gi|258626084|ref|ZP_05720935.1| recF protein [Vibrio mimicus VM603] gi|262166786|ref|ZP_06034523.1| DNA recombination and repair protein RecF [Vibrio mimicus VM223] gi|262172780|ref|ZP_06040458.1| DNA recombination and repair protein RecF [Vibrio mimicus MB-451] gi|258581610|gb|EEW06508.1| recF protein [Vibrio mimicus VM603] gi|258584743|gb|EEW09477.1| recF protein [Vibrio mimicus VM573] gi|261893856|gb|EEY39842.1| DNA recombination and repair protein RecF [Vibrio mimicus MB-451] gi|262026502|gb|EEY45170.1| DNA recombination and repair protein RecF [Vibrio mimicus VM223] Length = 363 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 158/368 (42%), Gaps = 12/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + P F E + + R ++I + + +L + L + Sbjct: 61 IQNECPELFVHGRICEHSLTSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRE-L 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S + ++A L +I+ R +N L S + E + + P + L + + DQ Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 Y L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++ Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350 Query: 363 KFMRISNH 370 K +++ Sbjct: 351 KTFHVAHG 358 >gi|85713966|ref|ZP_01044955.1| recombination protein F [Nitrobacter sp. Nb-311A] gi|85699092|gb|EAQ36960.1| recombination protein F [Nitrobacter sp. Nb-311A] Length = 381 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 139/371 (37%), Positives = 211/371 (56%), Gaps = 4/371 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L++S+FRNY+S L + + G NG GKTN LEAIS LSPGRG RRA+ D+ Sbjct: 5 RILRLSLSQFRNYSSAALKTRSNMVVLAGPNGAGKTNCLEAISLLSPGRGLRRATRDDIA 64 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVVIRVVDELNKHLRI 122 ++ A V+G GLA + ++ ++ R +I+ + HLR+ Sbjct: 65 DNRGDGSWAVSAEVQGPLGLATLGTGIDAPNNETAPGGRRCRIDREPVASAAAFGDHLRM 124 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL PSMD +F+G + +RRRFLDR+V AID H R+ ER +R RNRLL D W Sbjct: 125 VWLTPSMDGLFTGPASDRRRFLDRLVLAIDSDHSGRVSALERSLRSRNRLLEMRNHDDLW 184 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 C ++E + AEL V + R + I LS + +FP ++ L G+++ K + Sbjct: 185 CDAVERETAELAVAVAAMRAQTITRLSVALEARGSTSSFPSARIGLDGWMENKLLTEPAT 244 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ Y + L R D+ + RTL GPH +D V Y K + STGEQK +L+G+ L Sbjct: 245 AVEDRYREILRASRARDAAAGRTLEGPHLTDFEVIYAPKDMPAKEASTGEQKALLIGLVL 304 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHARL++ TG P+LLLDE+ AHLD +R+ALF + +G+Q++M+G D + F ++ Sbjct: 305 AHARLVAEMTGIIPLLLLDEVVAHLDPHRRDALFSELAGLGAQVWMSGADPAAFANVGAG 364 Query: 362 AKFMRISNHQA 372 ++ + + + Sbjct: 365 SETFNVDSGRI 375 >gi|290473097|ref|YP_003465958.1| gap repair protein [Xenorhabdus bovienii SS-2004] gi|289172391|emb|CBJ79158.1| gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction [Xenorhabdus bovienii SS-2004] Length = 363 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 157/369 (42%), Gaps = 13/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN A L VG NG GKT+ILEAI L GR FR V Sbjct: 1 MILSRLLIRDFRNIADADLTLATGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSIQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F R+E +++ L + ++I+ + EL K L + Sbjct: 61 IRHDCEEFI-LHGRLEQQFHERILAVGLSKNRLGDSK-VRIDGSDGHKIAELAKMLPMQL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR F+D F +PR ++ +RL++ RN L + Sbjct: 119 ITPEGFTLLNGGPKYRRAFIDWGCFHNEPRFFTAWVNLKRLLKQRNAALRQ-VTRYGQIQ 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L +I+ R E I ++ I E K+ P LS++ + Sbjct: 178 HWDRELAPLATEISQWRAEYIAGIAEDI-EKTCKQFLPEFTLSISFQQGWDKES------ 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + + S G+ K+++ + LA Sbjct: 231 -EYAELLARQFERDRTLTYTASGPHKADLRIRVDGTPVEDML-SRGQLKLLMCALRLAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + +G + LLD+ ++ LD +R L + +Q+F++ T V D ++ ++ Sbjct: 289 EYFTRQSGQKCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAITPGQVTDMIDVNSR 348 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 349 MFRVEHGKI 357 >gi|251787655|ref|YP_003002376.1| recombination protein F [Dickeya zeae Ech1591] gi|247536276|gb|ACT04897.1| DNA replication and repair protein RecF [Dickeya zeae Ech1591] Length = 361 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 155/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR A V Sbjct: 1 MALTRLLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F R+EG E + + D +VR I+ V EL + L I Sbjct: 61 IRHEQAEFI-LHGRIEGQERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL+R RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQ-VSHYGQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L I+ R E +A+++ I + P LS + + Sbjct: 176 AWDRELVPLAEGISRWRAEYSSAIAADIGSTCA-QFLPEFSLSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T +GPH++D + A+ S G+ K+++ + LA Sbjct: 229 -DYAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 ++ G + L+D+ ++ LD +R L + +Q+F++ T + + D + E K Sbjct: 287 EFLTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|254291125|ref|ZP_04961922.1| recF protein [Vibrio cholerae AM-19226] gi|150422970|gb|EDN14920.1| recF protein [Vibrio cholerae AM-19226] Length = 363 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 157/368 (42%), Gaps = 12/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + P F E + + R ++I + + +L + L + Sbjct: 61 IQNECPELFVHGRICEHSLTSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRE-L 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S + ++A L +I+ R +N L + E + + P + L + + DQ Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 Y L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++ Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350 Query: 363 KFMRISNH 370 K +++ Sbjct: 351 KTFHVAHG 358 >gi|261213261|ref|ZP_05927543.1| DNA recombination and repair protein RecF [Vibrio sp. RC341] gi|262402080|ref|ZP_06078644.1| DNA recombination and repair protein RecF [Vibrio sp. RC586] gi|260837535|gb|EEX64238.1| DNA recombination and repair protein RecF [Vibrio sp. RC341] gi|262351726|gb|EEZ00858.1| DNA recombination and repair protein RecF [Vibrio sp. RC586] Length = 363 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 158/368 (42%), Gaps = 12/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + P F E + + R ++I + + +L + L + Sbjct: 61 IQNECPELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRE-L 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S + ++A L +I+ R +N L S + E + + P + L + + DQ Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 Y L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++ Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350 Query: 363 KFMRISNH 370 K +++ Sbjct: 351 KTFHVAHG 358 >gi|168183730|ref|ZP_02618394.1| DNA replication and repair protein RecF [Clostridium botulinum Bf] gi|237793324|ref|YP_002860876.1| recombination protein F [Clostridium botulinum Ba4 str. 657] gi|259563360|sp|C3KXR0|RECF_CLOB6 RecName: Full=DNA replication and repair protein recF gi|182673206|gb|EDT85167.1| DNA replication and repair protein RecF [Clostridium botulinum Bf] gi|229261280|gb|ACQ52313.1| DNA replication and repair protein RecF [Clostridium botulinum Ba4 str. 657] Length = 364 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ Sbjct: 1 MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + ++ T+ E ++ DI+I + + +N + I+ + EL +L + Sbjct: 61 IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182 P RI RR+FLD + I+ + ++ + +++ RN L + Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+++ G I R + ++ L+ + +K ++ + K F Sbjct: 176 IDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E RK D T IGPHR D V + I GS G+Q+ ++ + A Sbjct: 233 AEKELLMFFKKNRKKDFERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361 +I N G P+LLLD++ + LD +++ + + I Q +T T D + Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349 Query: 362 -AKFMRISNHQA 372 ++ ++N + Sbjct: 350 QSQLYLVNNGKI 361 >gi|300811994|ref|ZP_07092450.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497020|gb|EFK32086.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 381 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 155/377 (41%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + S FRN A L L FD +F+G+N GKTN+LEAI FL+ R R ++ ++ Sbjct: 1 MYLGRFKQSGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G FA + G + + L + + +N V + + HL Sbjct: 61 IAFGQD-----FASLAGRVHKRQLDLDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRF+D I+P + + +L++ RN L D Sbjct: 116 FSPEDLELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQ 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 + Q+A ++ R + L+ E + + +L + K Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +K++ + + + T +GPHR DL K + S G+Q+ + + Sbjct: 236 DQPAQIKQKMLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA +LI TG PILLLD++ + LD++++ AL + +Q F+T TD Sbjct: 295 SLKLAEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQTQTFITTTDLDGISQ 353 Query: 357 SLNETAKFMRISNHQAL 373 + + + I + + + Sbjct: 354 EIVKQPRIFYIHSGKII 370 >gi|293393723|ref|ZP_06638031.1| recombination protein F [Serratia odorifera DSM 4582] gi|291423767|gb|EFE96988.1| recombination protein F [Serratia odorifera DSM 4582] Length = 362 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 151/369 (40%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEA+ L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLAPAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P + G E + + + D VR I+ V EL + L + Sbjct: 61 IRHDQPEYVLHGRVDSGSERELSVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 118 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I + P LS + + Sbjct: 177 AWDQELIPLAERISDWRAAYSDAIAADITATCA-QFLPEFALSFSFQRGWDKES------ 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 230 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + L+D+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 288 EFLTRQSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMVGEKGK 347 Query: 364 FMRISNHQA 372 R+ + Sbjct: 348 MFRVEQGKI 356 >gi|296100374|ref|YP_003610520.1| recombination protein F [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054833|gb|ADF59571.1| recombination protein F [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 357 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R SF R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQESF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E ++ + + K+ P L+ + + + Sbjct: 176 PWDMELIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVMDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|313203095|ref|YP_004041752.1| DNA replication and repair protein recf [Paludibacter propionicigenes WB4] gi|312442411|gb|ADQ78767.1| DNA replication and repair protein RecF [Paludibacter propionicigenes WB4] Length = 363 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 156/376 (41%), Gaps = 19/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N LVF F+G+NG+GKTNIL+AI FLS + + + Sbjct: 1 MRLNSLSILNYKNIREAELVFSPNINCFIGNNGMGKTNILDAIYFLSFCKSHSNSIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ F + + DI ++ R + + N + + L + Sbjct: 61 ILHGAE-FCLLQGKYTLGDQTEDIYCGMKMRQKKQFKR---NKKEYERLSDHIGLLPLVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P + G S ERR+F+D ++ + + ++ + ++ RN LL E D S Sbjct: 117 VSPDDSELIQGGSEERRKFIDGVISQYNKTYLNNLLQYNNALKQRNALLKSEKPVDDSLL 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E QMA G I R I+ + Y + + ++SL+ Sbjct: 177 DIWEEQMAAFGNYIYEQRKLFIDEFIPVFQNYYSYISVGNEQISLSYHSQHHDR------ 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + K+ R D + + G H+ DL + D I GS G+ K L+ + LA Sbjct: 231 --DIKTKMLATRDRDRILGYSTQGIHKDDLEMLLGDYPIKRV-GSQGQNKTYLISLKLAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV----FDSL 358 + T +P+LLLD+I LD + + +V+ D QIF+T T++ L Sbjct: 288 FDFLKRTHNLSPLLLLDDIFDKLDSVRVKKIIELVSGDTFGQIFITDTNREHLDLLLLQL 347 Query: 359 NETAKFMRISNHQALC 374 + A + N + C Sbjct: 348 EQDATIFTVENGEISC 363 >gi|237729022|ref|ZP_04559503.1| recombination protein F [Citrobacter sp. 30_2] gi|226909644|gb|EEH95562.1| recombination protein F [Citrobacter sp. 30_2] Length = 357 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R SF R++G E I + + D VR I+ V EL + + Sbjct: 61 IRHEQESF-VLHGRLQGEERETSIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E ++ + + Q + P LS + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLSFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|282863317|ref|ZP_06272376.1| DNA replication and repair protein RecF [Streptomyces sp. ACTE] gi|282561652|gb|EFB67195.1| DNA replication and repair protein RecF [Streptomyces sp. ACTE] Length = 376 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 163/382 (42%), Gaps = 23/382 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + D T+FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARAEVPLDPGVTVFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A +G I+LE R+ R +R D L +R Sbjct: 61 VRMGAERAVVRAAVTQGERSQL---IELEINPGRANRARVNRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 P + G ERRRFLD +V A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233 D S + + +G ++ R+++I L L + + L + Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYADVAPGGGPVALEYRSSVG 236 Query: 234 GKFDQS--FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + S L E+ L + RK + TL+GPHR DL++ + S GE Sbjct: 237 PEVGPSRTREELYEQVMAALAEARKQEIERGVTLVGPHRDDLVLGLRGMPAK-GYASHGE 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 296 SWSYALALRLASYDLLRGE-GNEPVLVLDDVFAELDTRRRERLAELVA-PGEQVLVTAAV 353 Query: 351 DKSVFDSLNETAKFMRISNHQA 372 D V L+ T +S Sbjct: 354 DDDVPGVLSGT--RYAVSEGAV 373 >gi|195941091|ref|ZP_03086473.1| recombination protein F [Escherichia coli O157:H7 str. EC4024] gi|295095338|emb|CBK84428.1| DNA replication and repair protein RecF [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 357 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R SF R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQESF-VLHGRLQGAERETAIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E ++ + + K+ P L+ + + + Sbjct: 176 PWDMELIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|307133245|ref|YP_003885261.1| gap repair protein [Dickeya dadantii 3937] gi|306530774|gb|ADN00705.1| gap repair protein [Dickeya dadantii 3937] Length = 361 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 92/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR A V Sbjct: 1 MALTRLLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F R+EG E + + D +VR I+ V EL + L I Sbjct: 61 IRHEQAEFI-LHGRIEGQERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL+R RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQ-VSHYGQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L I+ R + A+++ I + P LS + + Sbjct: 176 AWDRELVPLAEGISQWRADYSAAIAADIGSTCA-QFLPEFSLSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T +GPH++D + A+ S G+ K+++ + LA Sbjct: 229 -DYAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 ++ G + L+D+ ++ LD +R L + +Q+F++ T + + D + E K Sbjct: 287 EFLTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|297200943|ref|ZP_06918340.1| recombination protein F [Streptomyces sviceus ATCC 29083] gi|197716886|gb|EDY60920.1| recombination protein F [Streptomyces sviceus ATCC 29083] Length = 373 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 103/379 (27%), Positives = 168/379 (44%), Gaps = 20/379 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EAI +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAIGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE ++ R +R D L +R Sbjct: 61 VRMGADRAI---VRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 D S + +A +G ++ R+++I AL L + ++ ++L Sbjct: 177 RSMDLSTLDVWDQHLARVGAELLAQRLDLIAALQPLTDKAYEQLAPGGGPIALEYKPSAP 236 Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + AL E+ L + RK + TL+GPHR DL + + + S GE Sbjct: 237 GEAHTREALHEQLMAALAEARKQEIERGVTLVGPHRDDLNLKL-GQLPAKGYASHGESWS 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 296 YALALRLASYDLLRAE-GNEPVLILDDVFAELDTRRRERLAELVA-PGEQVLVTAAVDDD 353 Query: 354 VFDSLNETAKFMRISNHQA 372 V L T +S Sbjct: 354 VPHVLAGT--RYAVSEGAV 370 >gi|254994016|ref|ZP_05276206.1| recombination protein F [Listeria monocytogenes FSL J2-064] Length = 352 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 148/356 (41%), Gaps = 13/356 (3%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 L F +F+G+N GKTN+LEA+ L+ + R + D A++EG Sbjct: 1 LEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFIMWEKEE-----AKMEGR 55 Query: 83 EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142 S+ LE + + ++N + + + + +L + P + G RRR Sbjct: 56 IAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVKGAPGIRRR 115 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQMAELGVKIN 198 FL+ + + P + + +++R+++ RN+ L + D + Q A++ + + Sbjct: 116 FLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQFADVAINLT 175 Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKM 257 R + I L + + + L + + K + +K+ ++ Sbjct: 176 KRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASITLNGDDPEVWKADLLQKMESIKQR 235 Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317 + TLIGPHR D + + + GS G+Q+ + I LA LI TG P+L Sbjct: 236 EIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVL 294 Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQA 372 LLD++ + LD+ +++ L + Q F+T T S D + A + Sbjct: 295 LLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHETLKQATTFYVEKGTV 349 >gi|168235475|ref|ZP_02660533.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737823|ref|YP_002116780.1| recombination protein F [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|226737833|sp|B4TN05|RECF_SALSV RecName: Full=DNA replication and repair protein recF gi|194713325|gb|ACF92546.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291440|gb|EDY30792.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 357 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSVISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|153212933|ref|ZP_01948527.1| recF protein [Vibrio cholerae 1587] gi|124116159|gb|EAY34979.1| recF protein [Vibrio cholerae 1587] Length = 363 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 157/368 (42%), Gaps = 12/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + P F E + + R ++I + + +L + L + Sbjct: 61 IQNECPELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S + ++A L +I+ R +N L + E + + P + L + + DQ Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 Y L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++ Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350 Query: 363 KFMRISNH 370 K +++ Sbjct: 351 KTFHVAHG 358 >gi|257054093|ref|YP_003131925.1| recombination protein F [Saccharomonospora viridis DSM 43017] gi|256583965|gb|ACU95098.1| DNA replication and repair protein RecF [Saccharomonospora viridis DSM 43017] Length = 390 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 167/395 (42%), Gaps = 35/395 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR++ + L T+ VG NG GKTN+LEAI ++S R A+ A + Sbjct: 1 MYLRHLQVTDFRSWEHVDLPLAQGPTVLVGPNGQGKTNLLEAIGYISTLSSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G A V +++++LE R+ R +IN + ++ LR Sbjct: 61 VRHGCDRALVRAAVVNEG---RELTVELEIAPGRANRA-RINRGAVGKPRDVLGILRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------- 175 P + G ERRRFLD ++ PR+ +++R++R RN LL Sbjct: 117 FSPEDLALVRGDPSERRRFLDDLLVQRAPRYAGVRSEYDRVLRQRNALLKSVGRAGGRRG 176 Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228 + S + +A G ++ AR+ ++ L + +++ Sbjct: 177 AREETDPYALSTLQVWDNHLASAGAELLAARLNLVAELGPYVASSYADVAPDSRPARIAY 236 Query: 229 TGFLDGKFDQSF----------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 L G + + L E + L + R+ + +LIGPHR DL + Sbjct: 237 RSSLGGALPEGWGTPDGPEASTEQLGEILLRVLGEVRETELERGVSLIGPHRDDLELMLG 296 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 + A + S GE + + LA RL+ N +G P+LLLD++ A LD +R L + Sbjct: 297 E-APAKGYASHGESWSFALALRLASYRLLRNESGGEPVLLLDDVFAELDSRRRARLAEVA 355 Query: 339 TDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372 T Q+ +T D+ V +SN + Sbjct: 356 TKAE-QVLVTAAVDEDVPVEF--AGVRYAVSNGEV 387 >gi|146309670|ref|YP_001174744.1| recombination protein F [Enterobacter sp. 638] gi|166918723|sp|A4W4R3|RECF_ENT38 RecName: Full=DNA replication and repair protein recF gi|145316546|gb|ABP58693.1| DNA replication and repair protein RecF [Enterobacter sp. 638] Length = 357 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQVGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R SF R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQESFI-LHGRLQGSERETSIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQVR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E ++ + + K+ P L+ + + + Sbjct: 176 PWDMELVPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D ++ +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|116512900|ref|YP_811807.1| recombination protein F [Lactococcus lactis subsp. cremoris SK11] gi|123025165|sp|Q02WH8|RECF_LACLS RecName: Full=DNA replication and repair protein recF gi|116108554|gb|ABJ73694.1| DNA replication and repair protein RecF [Lactococcus lactis subsp. cremoris SK11] Length = 359 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 155/370 (41%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K + + FRNY L+L F IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MKLKQIELKNFRNYEDLKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +V G+ A ++ LE + R + N + + + L+I Sbjct: 61 ICWSGQEM-----KVSGLVEKAHATVPLEVQLSSKGRIAKANHLKENRLADYIGQLKILM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RRRF+D + I + + + R ++ RN L + D ++ Sbjct: 116 FAPENLELVKGSPATRRRFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDQAKIDKNF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + ++ Q+AE G KI R I L + ++ L +T + K D Sbjct: 176 LTVLDEQLAEHGNKIMFERKTFIEKLEIHAKKIHEQLTHGLETLKITYNQNVKTD----- 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++K+L + D +T +GPHR DL + + GS G+Q+ V + I LA Sbjct: 231 ----FSKELLSRQDHDIFRHQTTVGPHRDDLQFFINEINV-ADFGSQGQQRTVALSIKLA 285 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 LI TG PILLLD++ + LD ++ L T +L E Sbjct: 286 EIDLIFEETGEYPILLLDDVMSELDNHRQLDLIETSLGKTQTFIT-TTTLDHLKNLPENL 344 Query: 363 KFMRISNHQA 372 +++ Sbjct: 345 SIFHVTDGTI 354 >gi|225386350|ref|ZP_03756114.1| hypothetical protein CLOSTASPAR_00094 [Clostridium asparagiforme DSM 15981] gi|225047532|gb|EEG57778.1| hypothetical protein CLOSTASPAR_00094 [Clostridium asparagiforme DSM 15981] Length = 361 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 21/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY L + + I GDN GKTNILEA+ + + A D+ Sbjct: 1 MIIESIELKNYRNYEELHMELNEGTNILYGDNAQGKTNILEAVYVCCTSKSHKNAKDRDI 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R S R + D+ +K + + IN + IR EL + Sbjct: 61 IRFDQDESHIKMQIRKNDVPYRIDMHLK-----KNKPKGIAINGMPIRRASELFGIANVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 P I ERRRF+D + ++ + ++ + +++ RN+LL E F + Sbjct: 116 CFSPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLVQRNKLLKELAFRPDYG 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G ++ R + + L+ +I + + L + D Sbjct: 176 ETLDVWDMQLVNYGKEVMEYRGDFVCRLNEMIHGIHARLSGQKEDLKICYEPDTD----- 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ + L R D + TL GPHR D+ I GS G+Q+ + + Sbjct: 231 ---AAQFEEALKRSRPQDMKQKTTLCGPHRDDISFFVNGIDIR-KFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359 L+ L+ PILLLD++ + LD ++N L + DI Q +T T F ++ Sbjct: 287 LSELELVKQLIHDRPILLLDDVLSELDAGRQNHLLNAINDI--QTIITCTGLDDFVNNRF 344 Query: 360 ETAKFMRISNHQALC 374 + K ++ + + Sbjct: 345 KIDKIFKVIDGAVVS 359 >gi|161505633|ref|YP_001572745.1| recombination protein F [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189039638|sp|A9MJU2|RECF_SALAR RecName: Full=DNA replication and repair protein recF gi|160866980|gb|ABX23603.1| hypothetical protein SARI_03809 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 357 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D + T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRILTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D ++ +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFSVEKGKI 355 >gi|194472063|ref|ZP_03078047.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458427|gb|EDX47266.1| DNA replication and repair protein RecF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 357 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITSEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|146276062|ref|YP_001166221.1| recombination protein F [Rhodobacter sphaeroides ATCC 17025] gi|145554303|gb|ABP68916.1| DNA replication and repair protein RecF [Rhodobacter sphaeroides ATCC 17025] Length = 363 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 137/370 (37%), Positives = 202/370 (54%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ + R+ FD + FVG NG GKTN+LEAIS LSPGRG RRA+ ++ Sbjct: 4 LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNVLEAISLLSPGRGLRRAAADEI 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A V G+ ++ E R VR D L + LRI W Sbjct: 64 ARRPEALGWKVAAAVRGLHSDHEVETWAEGGGARQVRI----DGKAATQVMLGRLLRIVW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR+++ + RRRFLDR+ + P H ++D+E+ MR RNRLL E D+ W + Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPDHAEAVLDYEKAMRERNRLLKEQVADAHWHA 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E +MAE I R + L + + + FP LS+ Sbjct: 180 ALEGRMAEAARVIRAHREAAVARL--MAAQGAAETAFPRAMLSVAS-----------EDP 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ A +GR+ D + RTL+GPHR+DL Y K + A STGEQK +L+ + LA+ Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLLGPHRADLTAIYAAKGVPAAQCSTGEQKALLISLVLANG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G APILLLDE++AHLDE +R ALF + +G+Q +MTGT +F +L A+ Sbjct: 287 RALAEDLGAAPILLLDEVAAHLDEGRRAALFDEICALGAQAYMTGTGPELFTALGGRAQR 346 Query: 365 MRISNHQALC 374 + ++ + L Sbjct: 347 IEVTEAEGLS 356 >gi|153940655|ref|YP_001389373.1| recombination protein F [Clostridium botulinum F str. Langeland] gi|166220705|sp|A7G9B3|RECF_CLOBL RecName: Full=DNA replication and repair protein recF gi|152936551|gb|ABS42049.1| DNA replication and repair protein RecF [Clostridium botulinum F str. Langeland] gi|295317480|gb|ADF97857.1| DNA replication and repair protein RecF [Clostridium botulinum F str. 230613] Length = 364 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 163/372 (43%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +++ FRNY + L IFVG+N GKTNILE+I + S G+ R D+ Sbjct: 1 MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + ++ T+ E ++ DI+I + + +N + I+ + EL +L + Sbjct: 61 IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182 P RI RR+FLD + I+ + ++ + +++ RN L + Sbjct: 116 MFSPEDLRIIKDYPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+++ G I R + ++ L+ + +K ++ + K F Sbjct: 176 IDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E L RK D T IGPHR D V + I GS G+Q+ ++ + A Sbjct: 233 AEKELLIVLKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361 +I N G P+LLLD++ + LD +++ + + I Q +T T D Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLHKK 349 Query: 362 -AKFMRISNHQA 372 ++ ++N + Sbjct: 350 QSQLYLVNNGKI 361 >gi|239930172|ref|ZP_04687125.1| recombination protein F [Streptomyces ghanaensis ATCC 14672] gi|291438514|ref|ZP_06577904.1| RecF protein [Streptomyces ghanaensis ATCC 14672] gi|291341409|gb|EFE68365.1| RecF protein [Streptomyces ghanaensis ATCC 14672] Length = 373 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 166/379 (43%), Gaps = 20/379 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYPRVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE ++ R +R D L +R Sbjct: 61 VRVGADRAII---RAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 D S + +A G ++ R+++I L L + ++ LSL Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLITTLQPLADKAYERLAPGGGPLSLEYRPSAP 236 Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + L E+ L + RK + TL+GPHR DL++ + + S GE Sbjct: 237 GEAHTREDLFEQLTAALAEARKQEIERGVTLVGPHRDDLLLKL-GRLPAKGYASHGESWS 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 296 YALALRLASYDLLRAE-GNEPVLVLDDVFAELDTRRRERLAELVA-PGEQVLVTAAVDDD 353 Query: 354 VFDSLNETAKFMRISNHQA 372 V L+ T ++ Sbjct: 354 VPHVLSGT--RFAVAEGTV 370 >gi|325280925|ref|YP_004253467.1| DNA replication and repair protein recF [Odoribacter splanchnicus DSM 20712] gi|324312734|gb|ADY33287.1| DNA replication and repair protein recF [Odoribacter splanchnicus DSM 20712] Length = 364 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 157/376 (41%), Gaps = 21/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K LNI F+N A L F + FVG+NGVGKTN+L+AI LS + + Sbjct: 1 MTLKELNIINFKNIAEATLTFTSGFNCFVGNNGVGKTNVLDAIYHLSMCKSYFNLPDLQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P FF + E + ++ + + N + E + + Sbjct: 61 IRHEEP-FFVVQGKYERGGEELTVYCGVKRG---QKKVFKKNQKAYDKLSEHIGLIPLVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---FDSS 181 + P + G S ERR+ +D ++ D + R+I + + + RN LL D Sbjct: 117 ISPEDFILIDGGSEERRKLVDGIISQCDRVYLHRLIRYNKALTQRNMLLKSAAGKFLDPE 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 Q+AE G I R+ + S+ Y ++ + ++ L K Sbjct: 177 MLEVWNEQLAEHGEAIRQKRIAFLKEFRSVFQTYYERLSLGREEVCLEYKPSVK------ 230 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + + L D + T +G HR DL+++ D A+ GS G++K L+ + L Sbjct: 231 --EGNFLTALKQAADRDRLLTYTTVGIHRDDLVLNIGDYAVR-KIGSQGQKKTFLIALKL 287 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSLNE 360 A + + P+LLLD+I LD D+ + +IV ++ Q+F+T T++ D + Sbjct: 288 AQYHWLHQMSEVKPLLLLDDIFDKLDADRVEQIVKIVGGEMFGQVFITDTNRGHIDDILR 347 Query: 361 ----TAKFMRISNHQA 372 K ++ + Sbjct: 348 AQAVDYKLFTVTGGEI 363 >gi|123444340|ref|YP_001008305.1| recombination protein F [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166221878|sp|A1JT78|RECF_YERE8 RecName: Full=DNA replication and repair protein recF gi|122091301|emb|CAL14187.1| DNA metabolism protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 361 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L + VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E + + + + D VR I+ V EL + L + Sbjct: 61 IRHECAEF-VLHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + + Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L D T +GPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLERQFVRDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|309804122|ref|ZP_07698203.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 11V1-d] gi|309809779|ref|ZP_07703633.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN 2503V10-D] gi|308163890|gb|EFO66156.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 11V1-d] gi|308169958|gb|EFO71997.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN 2503V10-D] Length = 373 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 159/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ Sbjct: 1 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A + G +I L+ + IN + + + + Sbjct: 61 IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237 + + + Q+A L ++ RV ++ L + + L + F + Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S + ++ R + TL+GPHR DL V + +K + S G+Q+ +++ Sbjct: 236 DSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356 I LA L+ PILLLD++ + LD ++ L + +Q F+T TD S+ Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353 Query: 357 SLNETAKFMRISNHQA 372 + + + RI + Sbjct: 354 EMIKIPRIFRIVSGTV 369 >gi|289449549|ref|YP_003474443.1| putative DNA replication and repair protein RecF [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184096|gb|ADC90521.1| putative DNA replication and repair protein RecF [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 382 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 91/382 (23%), Positives = 169/382 (44%), Gaps = 18/382 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRNY L F + +F G NG GKTN+LEAI + GR R + AD+ Sbjct: 1 MIINKLELENFRNYDHLTASFIPEINVFYGFNGQGKTNLLEAIYLCTCGRSHRTSRDADL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLR 121 + + + E +SI + R R ++ + + + + +L Sbjct: 61 IKFEQLHYQVLIEFIPQDEYCETLSIAYKKDNFSSARGKRIIKHDGIELTRIVDLMGIFH 120 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 P ++ RRRFLD ++ ID + ++ F ++++ RN++L + +S Sbjct: 121 AVIFAPEDLQLLKDGPGIRRRFLDILISQIDKLYFIKLQQFVKIIQQRNKMLKDKNTNSK 180 Query: 182 W---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKF 236 W + Q+AEL I R++++N +S + E+ Q+ + I L Sbjct: 181 WQSLMDIWDFQLAELVTYIISKRIQVLNEISDMTKEFYQQISSGSEMIDLKYECTFKTNL 240 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + + +L R+ D T +GPH D+ +K + S G+ + ++ Sbjct: 241 KLEKEKVVQNIYDELQKQRQNDLYRGSTSLGPHHDDMQFFLNNKQAKLV-ASQGQTRSIV 299 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA ++ TG P+LLLD++ + LD+++RNAL + +Q+F+T T+ + Sbjct: 300 LALKLAELECLTEKTGIRPVLLLDDVMSELDQNRRNALIGAMKS--AQVFVTCTEPDQVE 357 Query: 357 SL-------NETAKFMRISNHQ 371 + K+ I N + Sbjct: 358 EFSFSKNTDKSSIKYFNIDNGK 379 >gi|254486983|ref|ZP_05100188.1| DNA replication and repair protein RecF [Roseobacter sp. GAI101] gi|214043852|gb|EEB84490.1| DNA replication and repair protein RecF [Roseobacter sp. GAI101] Length = 365 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 134/368 (36%), Positives = 193/368 (52%), Gaps = 14/368 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +S FR++ + D + G NG GKTNILEA+S LSPGRG RR+S D+TR Sbjct: 6 ISHLTLSHFRSHKRAIVDSDTRPVAIHGPNGAGKTNILEAVSLLSPGRGLRRSSALDMTR 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + A + + +I I E R VR D L + R+ WL+ Sbjct: 66 RPEALGWKVTALLHSLGSAHEIEIWSEAGAARQVRI----DGKATPQTALGRIARVLWLI 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 PSMDR++ + RRRFLDRM + P H + + +E+ MR RNRLL + + SW ++ Sbjct: 122 PSMDRLWIEGAEGRRRFLDRMTLSFLPDHAEQSLAYEKAMRERNRLLKDMVREPSWYLAL 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E Q+AE G I+ R + A++ + + FP LSL ++ Sbjct: 182 EQQLAEAGAAIHANRQSALQAITE--AQSQAETAFPTATLSLIC--------DMPTTAQD 231 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 L D R D + RTLIGPHR+DL Y K + STGEQK +LV + LA+AR Sbjct: 232 LRAALADNRMRDLAAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILANARA 291 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 ++ G P+LLLDE++AHLD +R AL+ +T +G+Q +MTGT +FDSL A+ + Sbjct: 292 LAADFGAPPLLLLDEVAAHLDASRRAALYDEITALGAQAWMTGTGAELFDSLGPRAQMLE 351 Query: 367 ISNHQALC 374 ++ + Sbjct: 352 VTETDGIS 359 >gi|186893347|ref|YP_001870459.1| recombination protein F [Yersinia pseudotuberculosis PB1/+] gi|226737851|sp|B2JYI8|RECF_YERPB RecName: Full=DNA replication and repair protein recF gi|186696373|gb|ACC87002.1| DNA replication and repair protein RecF [Yersinia pseudotuberculosis PB1/+] Length = 361 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L A VG NG GKT++LEA+ L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E A + + + D VR I+ V EL + L + Sbjct: 61 IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFFFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLARQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|315654134|ref|ZP_07907050.1| recombination protein F [Lactobacillus iners ATCC 55195] gi|315488830|gb|EFU78476.1| recombination protein F [Lactobacillus iners ATCC 55195] Length = 373 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 159/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ Sbjct: 1 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A + G +I L+ + IN + + + + Sbjct: 61 IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237 + + + Q+A L ++ RV ++ L + + L + F + Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S + ++ R + TL+GPHR DL V + +K + S G+Q+ +++ Sbjct: 236 DSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356 I LA L+ PILLLD++ + LD ++ L + +Q F+T TD S+ Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353 Query: 357 SLNETAKFMRISNHQA 372 + + + RI + Sbjct: 354 EMIKIPRIFRIVSGTV 369 >gi|318608023|emb|CBY29521.1| DNA recombination and repair protein RecF [Yersinia enterocolitica subsp. palearctica Y11] Length = 361 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L + VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E + + + + D VR I+ V EL + L + Sbjct: 61 IRHECAEF-VLHGRVDANERESSVGLSKSRQGDTRVR---IDGTDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + + Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|126738625|ref|ZP_01754330.1| recombination protein F [Roseobacter sp. SK209-2-6] gi|126720424|gb|EBA17130.1| recombination protein F [Roseobacter sp. SK209-2-6] Length = 375 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 133/369 (36%), Positives = 198/369 (53%), Gaps = 11/369 (2%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 + L +S FR++ + D + G NG GKTNILEA+S SPGRG RRAS A++T Sbjct: 13 ALTSLTLSHFRSHLRAEMHLDGRPVALFGANGAGKTNILEAVSLFSPGRGIRRASAAEMT 72 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R + ++ +I D+ + R ++I+ + L + R+ WL Sbjct: 73 RRPEGLGWKLKGVLQTSAQPYEIETW---SDEGAARQVRIDGKPANQIA-LGQICRVVWL 128 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 VP MDR++ + RRRFLDR+ + DP H + +E+ MR RN+LL E D W Sbjct: 129 VPVMDRLWVEAAEGRRRFLDRIALSFDPAHAEASLTYEKSMRERNKLLKEQVRDPVWYRV 188 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +EAQMA G +I++AR I L + + FP +L L +G+ QS + Sbjct: 189 LEAQMAASGHRIHMARTHAIEKLLD--AQRKAETAFPVAELQLLQS-EGEMPQS----EA 241 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E+ L + R D RTLIGPHRSDL+ Y K + STGEQK +LV + LA+AR Sbjct: 242 EFVDALAENRSRDLSVGRTLIGPHRSDLLGHYAAKGVAAKDCSTGEQKALLVSLILANAR 301 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 + TG P++LLDE++AHLD ++R AL+ + +G+Q +MTGT +F L + A+ + Sbjct: 302 ALMQETGAPPLVLLDEVAAHLDANRRQALYDEICALGAQAWMTGTGSELFAELKDRAQML 361 Query: 366 RISNHQALC 374 +S + Sbjct: 362 EVSEDAGIS 370 >gi|259500774|ref|ZP_05743676.1| recombination protein F [Lactobacillus iners DSM 13335] gi|302190775|ref|ZP_07267029.1| recombination protein F [Lactobacillus iners AB-1] gi|312874858|ref|ZP_07734877.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2053A-b] gi|325913713|ref|ZP_08176075.1| DNA replication and repair protein RecF [Lactobacillus iners UPII 60-B] gi|329919805|ref|ZP_08276756.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN 1401G] gi|259167468|gb|EEW51963.1| recombination protein F [Lactobacillus iners DSM 13335] gi|311089603|gb|EFQ48028.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2053A-b] gi|325477072|gb|EGC80222.1| DNA replication and repair protein RecF [Lactobacillus iners UPII 60-B] gi|328937152|gb|EGG33580.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN 1401G] Length = 373 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ Sbjct: 1 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A + G +I L+ + IN + + + + Sbjct: 61 IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237 + + + Q+A L ++ RV ++ L + + L + F + Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQKEILDIEYKASFPEFDEK 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S + ++ + + TL+GPHR DL V + +K + S G+Q+ +++ Sbjct: 236 DSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356 I LA L+ PILLLD++ + LD ++ L + +Q F+T TD S+ Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353 Query: 357 SLNETAKFMRISNHQA 372 + + + RI + Sbjct: 354 EMIKIPRIFRIVSGTV 369 >gi|238759586|ref|ZP_04620748.1| DNA replication and repair protein recF [Yersinia aldovae ATCC 35236] gi|238702245|gb|EEP94800.1| DNA replication and repair protein recF [Yersinia aldovae ATCC 35236] Length = 361 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 152/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L + VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E + + + + D VR I+ V EL + L + Sbjct: 61 IRHECAEF-VLHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R A+++ I P LS + + Sbjct: 176 PWDLEIIPLAERISEWRAAYSGAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T IGPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRALTYTAIGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ + V D + E K Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGK 346 Query: 364 FMRISNHQA 372 R+ + + Sbjct: 347 MFRVEHGKI 355 >gi|294630341|ref|ZP_06708901.1| RecF protein [Streptomyces sp. e14] gi|292833674|gb|EFF92023.1| RecF protein [Streptomyces sp. e14] Length = 373 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 101/379 (26%), Positives = 165/379 (43%), Gaps = 20/379 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + D T FVG NG GKTN++EA+ +L+ R A+ A + Sbjct: 1 MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLAALGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE R+ R +R D L +R Sbjct: 61 IRMGADRAVI---RAQVRQGERQQLVELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 D S + +A G ++ R+++I AL L + ++ L+L Sbjct: 177 RSMDMSTLDVWDQHLARAGAELLARRLDLIAALQPLADKAYEQLAPGGGPLALEYKPSAP 236 Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + L + L D RK + TL+GPHR DL++ + + S GE Sbjct: 237 GEAHTREDLYAQLTAALADARKQEIERGVTLVGPHRDDLLLKL-GQLPAKGYASHGESWS 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 296 YALALRLASYDLLRAE-GNEPVLILDDVFAELDARRRERLAELVA-PGEQVLVTAAVDDD 353 Query: 354 VFDSLNETAKFMRISNHQA 372 V L +S+ Sbjct: 354 VPHVL--AGARFTVSDGAV 370 >gi|260774539|ref|ZP_05883452.1| DNA recombination and repair protein RecF [Vibrio metschnikovii CIP 69.14] gi|260610445|gb|EEX35651.1| DNA recombination and repair protein RecF [Vibrio metschnikovii CIP 69.14] Length = 359 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 79/369 (21%), Positives = 153/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN + + + +G NG GKT++LEAI L GR F+ + V Sbjct: 1 MPLTRLVVQQFRNIKACDMTLSSGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECSELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + +RR F+D VF P F+RL + RN LL S Sbjct: 118 IHPEGFELLTDGPKQRRAFIDWGVFHSQPAFFDAWGRFKRLNKQRNALLKTAKSYRE-IS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +I+ R + + + E + + P +SLT + Sbjct: 177 YWDQELAQLAEQIDQWRQIYVEHMKK-VAEALCQSFLPEFSISLTYYRGWDKQTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D + T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YKEILQNNFARDQLLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D + +K Sbjct: 288 QHLTELTGKQCIYLIDDFASELDSQRRQRLADCLKATGAQVFVSSITESQVTDMIEPNSK 347 Query: 364 FMRISNHQA 372 + + Sbjct: 348 MFHVEHGTI 356 >gi|83941667|ref|ZP_00954129.1| recombination protein F [Sulfitobacter sp. EE-36] gi|83847487|gb|EAP85362.1| recombination protein F [Sulfitobacter sp. EE-36] Length = 365 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 198/367 (53%), Gaps = 14/367 (3%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + + + L +S FR++ + D + G NG GKTNILEA+S LSPGRG RR+S + Sbjct: 2 SGLYLSQLTLSHFRSHKRAVIDCDTRPVSIFGPNGAGKTNILEAVSLLSPGRGLRRSSAS 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D+TR + A + + + ++ I E R VR D L + R+ Sbjct: 62 DMTRRPEALGWKITAHLRSLGQIHEVEIWSEAGAARQVRI----DGKATAQTGLGRIARV 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL+PSMDR++ + RRRFLDRM + P H + + +E+ MR RNRLL + + SW Sbjct: 118 LWLIPSMDRLWIEGAEGRRRFLDRMTLSFLPDHADQSLAYEKAMRERNRLLKDMVREPSW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++E QMAE G I+ RV + A++ + + FP L L Sbjct: 178 YVALEQQMAEAGSAIHANRVAALQAITE--AQAQAETAFPTATLDLIC--------DMPT 227 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E + L D R D + RTLIGPHR+DL Y K + STGEQK +LV + LA Sbjct: 228 TAEGLRQALADNRMRDLSAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +AR ++ G P+LLLDE++AHLD ++R AL+ ++ +G+Q +MTGT + +FD+L A Sbjct: 288 NARALAADFGAPPLLLLDEVAAHLDANRRAALYDELSALGAQAWMTGTGEELFDTLGPRA 347 Query: 363 KFMRISN 369 + + ++ Sbjct: 348 QRLEVTE 354 >gi|21222284|ref|NP_628063.1| recombination protein F [Streptomyces coelicolor A3(2)] gi|256786616|ref|ZP_05525047.1| recombination protein F [Streptomyces lividans TK24] gi|289770509|ref|ZP_06529887.1| recombination protein F [Streptomyces lividans TK24] gi|548717|sp|P36176|RECF_STRCO RecName: Full=DNA replication and repair protein recF gi|436025|gb|AAA65213.1| putative [Streptomyces coelicolor A3(2)] gi|8247658|emb|CAB92996.1| DNA replication protein [Streptomyces coelicolor A3(2)] gi|289700708|gb|EFD68137.1| recombination protein F [Streptomyces lividans TK24] gi|1093582|prf||2104262B recF gene Length = 373 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 166/379 (43%), Gaps = 20/379 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G I+LE R+ R ++N ++ +R Sbjct: 61 VRMGAE---RAVIRAQVRQGERQQLIELELNPGRANRA-RVNRSSQVKPRDVLGIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 D S + +A G ++ R+++I ++ L + ++ ++L Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLIASVQPLADKAYEQLAPGGGPVALEYKPSAP 236 Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + L E+ L + RK + TL+GPHR DL++ + S GE Sbjct: 237 GEAHTREDLYEQLMAALAEARKQEIERGVTLVGPHRDDLLLKLGSLPAK-GYASHGESWS 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 296 YALALRLASFDLLRAE-GNEPVLVLDDVFAELDARRRERLAELVA-PGEQVLVTAAVDDD 353 Query: 354 VFDSLNETAKFMRISNHQA 372 V L ++ Sbjct: 354 VPHVL--AGARFTVAEGTV 370 >gi|110677618|ref|YP_680625.1| recombination protein F [Roseobacter denitrificans OCh 114] gi|109453734|gb|ABG29939.1| DNA replication and repair protein RecF, putative [Roseobacter denitrificans OCh 114] Length = 366 Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 135/365 (36%), Positives = 200/365 (54%), Gaps = 11/365 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ R D + G NG GKTNILEA+S LSPGRG RRAS D+ Sbjct: 3 LHLTDLMVSHFRSHRVARFALDQRPVALFGPNGAGKTNILEAVSLLSPGRGLRRASAQDM 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + A+V + ++ + + R ++IN L + R+ W Sbjct: 63 TRRPEALGWKITAQVMSLGQHQEVETW---SQEGAARQVRINGKTA-AQTALGRVSRVLW 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+PSMDR++ + RRRFLDRM + +P H + +E+ MR RNRLL + SW Sbjct: 119 LIPSMDRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAMRERNRLLKNMVREPSWYQ 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E QMA+ GV ++ R + L+ + FP +L L D + Sbjct: 179 ALELQMAQAGVVVDQNRRMALRQLA--AAQSDATTAFPAAELEL-----IHNDAPLPDGE 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 D R D + RTL+GPHR+DLI Y K + STGEQK +LV + LA+A Sbjct: 232 TALRDAFADSRSRDLAAGRTLVGPHRADLIGTYRAKGVAARDCSTGEQKALLVSLILANA 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ +G AP+LLLDE++AHLD D+R AL+ +T +G+Q +MTGT+KS+FD+L + A++ Sbjct: 292 RALAQDSGAAPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTEKSLFDTLGDGAQY 351 Query: 365 MRISN 369 I+ Sbjct: 352 FEITE 356 >gi|254477354|ref|ZP_05090740.1| DNA replication and repair protein RecF [Ruegeria sp. R11] gi|214031597|gb|EEB72432.1| DNA replication and repair protein RecF [Ruegeria sp. R11] Length = 365 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 134/366 (36%), Positives = 203/366 (55%), Gaps = 11/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L D + G NG GKTNILEA+S SPGRG RRAS AD+ Sbjct: 2 LALTALTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A + ++ E R ++I++ +D L + R+ W Sbjct: 62 ARRPEELGWKLRAELRAGRQTYEVETWSEAG---KARQVKIDNKSASQID-LGEICRVVW 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MDR++ + RRRFLDR+V + DP H + +E+ MR RNRLL E D++W Sbjct: 118 LIPAMDRLWIEGAEGRRRFLDRIVLSFDPGHAEATLAYEKAMRERNRLLKEQVRDAAWYR 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +E+QMA+ G +I+ AR ++ L + + + FP +L L DG + L+ Sbjct: 178 VLESQMAQAGHRIHAARTAAVDRLR--LAQEAAETAFPAAELELIQS-DGGLPDNAADLQ 234 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E +A+ GR D + RTL+GPHR+DL+ Y K + STGEQK +LV + LA+A Sbjct: 235 ESFAE----GRFRDLAAGRTLLGPHRTDLLGTYAAKGLPARDCSTGEQKALLVSLILANA 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R + G APILLLDE+SAHLD ++R AL++ + +G+Q +MTGT F + A+ Sbjct: 291 RALIAAGGAAPILLLDEVSAHLDVNRRAALYQEILGLGAQAWMTGTGPEQFAEFDGQAQM 350 Query: 365 MRISNH 370 + + + Sbjct: 351 LCVQDG 356 >gi|82779229|ref|YP_405578.1| recombination protein F [Shigella dysenteriae Sd197] gi|309784250|ref|ZP_07678889.1| DNA replication and repair protein recF [Shigella dysenteriae 1617] gi|97180962|sp|Q329B8|RECF_SHIDS RecName: Full=DNA replication and repair protein recF gi|81243377|gb|ABB64087.1| ssDNA and dsDNA binding, ATP binding [Shigella dysenteriae Sd197] gi|308927757|gb|EFP73225.1| DNA replication and repair protein recF [Shigella dysenteriae 1617] Length = 357 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSMLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNESGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +++ + + K+ P L+ + + + Sbjct: 176 PWDKELILLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|312871309|ref|ZP_07731407.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 3008A-a] gi|311093323|gb|EFQ51669.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 3008A-a] Length = 373 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ Sbjct: 1 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A + G +I L+ + IN + + + + Sbjct: 61 IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNAYLKQISSKKASDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237 + + + Q+A L ++ RV ++ L + + L + F + Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S + ++ + + TL+GPHR DL V + +K + S G+Q+ +++ Sbjct: 236 DSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356 I LA L+ PILLLD++ + LD ++ L + +Q F+T TD S+ Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353 Query: 357 SLNETAKFMRISNHQA 372 + + + RI + Sbjct: 354 EMIKIPRIFRIVSGTV 369 >gi|294638325|ref|ZP_06716578.1| DNA replication and repair protein RecF [Edwardsiella tarda ATCC 23685] gi|291088578|gb|EFE21139.1| DNA replication and repair protein RecF [Edwardsiella tarda ATCC 23685] Length = 361 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 152/371 (40%), Gaps = 16/371 (4%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ + L I +FRN S L + VG NG GKT++LEAI L GR FR Sbjct: 3 RMALTRLMIRDFRNIESADLAPSSGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSQQAGR 62 Query: 64 VTRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 V R +F R++ G E + + + D VR I+ V EL + L + Sbjct: 63 VIRHDCATFI-LHGRIDAGGEREWAVGLSKNRQGDSKVR---IDGSDGHKVAELAQMLPM 118 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + P + +G RR FLD F D + RL++ RN L + S Sbjct: 119 QLITPEGFTLLNGGPKYRRAFLDWGCFHGDGDFFTAWSNLRRLLKQRNAALRQ-VTRYSQ 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + ++ L K++ R A++ I + P LS + + Sbjct: 178 IRPWDQELVPLANKVSALRAAYSEAIAQDIAATCS-QFLPEYALSFSFMRGWDRES---- 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EY + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 233 ---EYGELLERHFERDRALTYTALGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLA 288 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNET 361 ++ +G + L+D+ ++ LD +R L + G+Q+F++ + D ++E Sbjct: 289 QGEYLTRHSGRQCLYLIDDFASELDAGRRRLLAERLKSTGAQVFVSAVNADQVGDMVDEK 348 Query: 362 AKFMRISNHQA 372 K R+ + Sbjct: 349 GKMFRVEQGKI 359 >gi|312872636|ref|ZP_07732701.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2062A-h1] gi|311091678|gb|EFQ50057.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2062A-h1] Length = 373 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ Sbjct: 1 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A + G +I L+ + IN + + + + Sbjct: 61 IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237 + + + Q+A L ++ RV ++ L + + L + F + Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S + ++ + + TL+GPHR DL V + +K + S G+Q+ +++ Sbjct: 236 DSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356 I LA L+ PILLLD++ + LD ++ L + +Q F+T TD S+ Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353 Query: 357 SLNETAKFMRISNHQA 372 + + + RI + Sbjct: 354 EMIKIPRIFRIVSGTV 369 >gi|227873173|ref|ZP_03991464.1| recombination protein RecF [Oribacterium sinus F0268] gi|227841004|gb|EEJ51343.1| recombination protein RecF [Oribacterium sinus F0268] Length = 360 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 19/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RN L+L ++ I GDN GKTN+LEAI F S G+ FR ++ Sbjct: 1 MIIESIELQNYRNIEKLKLPLGEKNNILYGDNAQGKTNLLEAIFFGSTGKSFRFCKDKEL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G + + +G+ DI +K + + I+ ++ EL I Sbjct: 61 IHFGAEEAHLKMILKKKGISHRIDIHLK-----KNKSKGVAIDGFPVKKSSELFGLGNII 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 P + ERRRF+D + +D + + + ++++ RN+LL E YF Sbjct: 116 IFSPEDLSLIKNGPKERRRFIDLELCQLDKIYLYHLSMYNKVLQQRNKLLKELYFRPKLE 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + ++ + G + R + + L + + + +L L+ + Sbjct: 176 ETLFAWDEELVKHGKMVISLRRDFVENLRKKVENIHGEISGKREELLLSYEENVS----- 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +E ++ +L R+ + + TL GPHR DL + I GS G+Q+ + + Sbjct: 231 ---EENFSLQLEKNREAEKKQQTTLSGPHRDDLSFQINGQDIR-HFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA L+ PILLLD++ + LD+ ++N L + ++ S I TG ++ V Sbjct: 287 LAEIDLVRERIQDNPILLLDDVFSELDQKRQNFLLEQLGNLQSLITCTGLEELVKHRFPI 346 Query: 361 TAKFMRISNHQALC 374 + N Q C Sbjct: 347 D-HVFYVENGQVQC 359 >gi|320539856|ref|ZP_08039515.1| putative gap repair protein [Serratia symbiotica str. Tucson] gi|320030042|gb|EFW12062.1| putative gap repair protein [Serratia symbiotica str. Tucson] Length = 361 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEA+ L GR FR V Sbjct: 1 MALTRLLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F R++G E + + + + VR I+ V EL + L + Sbjct: 61 IRHEQPEF-VLHGRIDGAEREISVGLSKNRQSESKVR---IDGSDSHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F DP +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNDPGFFTAWSHLKRLLKQRNAALRQ-VSRYAQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + Q+ L +I+ R + A+++ I + P LS + + + Sbjct: 176 AWDQQLIPLAERISEWRAKYSEAIAADITATCA-QFLPEFALSFSFQRGWEKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GPH++D + + S G+ K+++ + LA Sbjct: 229 -DYGELLERLFERDRTLTYTAAGPHKADFRIRAAGTPVE-DLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ +G + L+D+ ++ LD +R L + +Q+F++ + V D E K Sbjct: 287 EFLTRQSGRRCLYLIDDFASELDIGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|260574427|ref|ZP_05842431.1| DNA replication and repair protein RecF [Rhodobacter sp. SW2] gi|259023323|gb|EEW26615.1| DNA replication and repair protein RecF [Rhodobacter sp. SW2] Length = 366 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 132/372 (35%), Positives = 197/372 (52%), Gaps = 12/372 (3%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + + I L++S FR++ + RL FD + VG NG GKTN+LEA+S LSPGRG RRA Sbjct: 2 SGLAITSLSLSHFRSHRAARLHFDGRPVALVGPNGAGKTNVLEAVSLLSPGRGLRRAGVD 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ R + A + G+ ++ E R VR D L + R+ Sbjct: 62 EIARRPEAMGWKVGADLRGIGAAHEVETWAEAGQARQVRI----DGKHATQAMLGRIARM 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WLVP+MDR++ + RRRFLDRM + P H ++ +E+ MR RNRLL + D+ W Sbjct: 118 LWLVPAMDRLWIEAAEGRRRFLDRMTLSFAPDHAEAVLAYEKAMRDRNRLLKDQVTDAHW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 +EAQMA G I R + L L + + FP L++ + Sbjct: 178 YGVLEAQMAASGAAIMAHRRLAVARL--LAAQVGAETAFPQADLAIVA------EGDLPE 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + A+ +GR+ D + RTLIGPHR+DL + K + STGEQK +L+ + LA Sbjct: 230 TTDALAQAFAEGRRRDLAAGRTLIGPHRADLAARFAAKDVAADQCSTGEQKALLISLILA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +AR ++ G APILLLDE++AHLD D+R AL+ + +G+Q MTGT +FD+L Sbjct: 290 NARALAADLGVAPILLLDEVAAHLDADRRAALYDEICALGAQALMTGTGAELFDTLGARG 349 Query: 363 KFMRISNHQALC 374 + +++ + Sbjct: 350 QTFAVADEAGVS 361 >gi|56552480|ref|YP_163319.1| recombination protein F [Zymomonas mobilis subsp. mobilis ZM4] gi|241762427|ref|ZP_04760505.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56544054|gb|AAV90208.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp. mobilis ZM4] gi|241373021|gb|EER62679.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 376 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 137/376 (36%), Positives = 205/376 (54%), Gaps = 8/376 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L++ +FR++ +RL +A I G+NGVGKTNILEAIS LSPGRGFR + D+ Sbjct: 1 MFISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R F+ A++ +E I +I + S R +++N V + L++ L Sbjct: 61 VRREGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTT-SANALSEWLA 119 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDS 180 I WL P+MDR+F + RRRFLDR+ I P H R +E MR RN+LL+ E +D Sbjct: 120 ILWLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGYDP 179 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQ 238 W +E MAE I +AR ++++ LS I + + F L+L +D + Sbjct: 180 LWLDGLEQIMAEQATHILLARRQLVDLLSEEIAKQ-EDGLFAKADLALEEGVDSRDLVTH 238 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + R D+ RTL G HR+DL V + KA+ A STGEQK +L+G Sbjct: 239 NSEEIMPLLQNIWQKSRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGEQKALLLG 298 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA LI+ G P+LLLDE++AHLD +R LF I+ G Q++MTGT+ S+F++ Sbjct: 299 LVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLFETA 358 Query: 359 NETAKFMRISNHQALC 374 E A + ++ + + Sbjct: 359 GEAACYFQLDKGEIIS 374 >gi|229530200|ref|ZP_04419589.1| DNA recombination and repair protein RecF [Vibrio cholerae 12129(1)] gi|229332333|gb|EEN97820.1| DNA recombination and repair protein RecF [Vibrio cholerae 12129(1)] Length = 363 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 157/368 (42%), Gaps = 12/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + F E + + R ++I + + +L + L + Sbjct: 61 IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S + ++A L +I+ R +N L S + E + + P + L + + DQ Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 Y L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++ Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350 Query: 363 KFMRISNH 370 K +++ Sbjct: 351 KTFHVAHG 358 >gi|261341640|ref|ZP_05969498.1| hypothetical protein ENTCAN_08108 [Enterobacter cancerogenus ATCC 35316] gi|288315997|gb|EFC54935.1| DNA replication and repair protein RecF [Enterobacter cancerogenus ATCC 35316] Length = 357 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R SF R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQESF-VLHGRLQGAERETAIGLSKDKQGDSKVR---IDGTDGHKVAELALLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E ++ + + K+ P L+ + + + Sbjct: 176 PWDLELIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYADVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|269137361|ref|YP_003294061.1| recombinational DNA repair ATPase [Edwardsiella tarda EIB202] gi|267983021|gb|ACY82850.1| recombinational DNA repair ATPase [Edwardsiella tarda EIB202] gi|304557462|gb|ADM40126.1| DNA recombination and repair protein RecF [Edwardsiella tarda FL6-60] Length = 358 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 83/369 (22%), Positives = 152/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLVIRDFRNIEDADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++ G ++++ L +D + ++I+ V EL + L + Sbjct: 61 IRHDCAAF-VLHGRIDDGGGR-ELAVGLS-KDRQGDSKVRIDGSDGHKVAELAQMLPMQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F D + R+++ RN L + + Sbjct: 118 ITPEGFTLLNGGPKYRRAFLDWGCFHGDRGFFTAWNNLRRVLKQRNAALRQ-VTRYAQIR 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +++ R A++ I + P LS + + Sbjct: 177 PWDQELVPLAEQVSALRAAYSEAIAQDIAATCS-QFLPEYALSFSFMRGWDRES------ 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 230 -DYAALLERHFERDRALTYTALGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ +G + L+D+ ++ LD +R L + G+Q+F++ + D ++E K Sbjct: 288 EYLTRHSGRQCLYLIDDFASELDAGRRRLLAERLKATGAQVFVSAVNADQVGDMVDEKGK 347 Query: 364 FMRISNHQA 372 R+ + Sbjct: 348 MFRVEQGKI 356 >gi|15640046|ref|NP_062598.1| recombination protein F [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147675554|ref|YP_001218398.1| recombination protein F [Vibrio cholerae O395] gi|153819847|ref|ZP_01972514.1| recF protein [Vibrio cholerae NCTC 8457] gi|153821947|ref|ZP_01974614.1| recF protein [Vibrio cholerae B33] gi|227080251|ref|YP_002808802.1| recF protein [Vibrio cholerae M66-2] gi|229508299|ref|ZP_04397803.1| DNA recombination and repair protein RecF [Vibrio cholerae BX 330286] gi|229508862|ref|ZP_04398353.1| DNA recombination and repair protein RecF [Vibrio cholerae B33] gi|229515947|ref|ZP_04405404.1| DNA recombination and repair protein RecF [Vibrio cholerae TMA 21] gi|229517133|ref|ZP_04406579.1| DNA recombination and repair protein RecF [Vibrio cholerae RC9] gi|229606573|ref|YP_002877221.1| recombination protein F [Vibrio cholerae MJ-1236] gi|254225546|ref|ZP_04919155.1| recF protein [Vibrio cholerae V51] gi|254851579|ref|ZP_05240929.1| DNA replication and repair protein recF [Vibrio cholerae MO10] gi|298501199|ref|ZP_07010998.1| recombination protein F [Vibrio cholerae MAK 757] gi|13959488|sp|Q9KVX4|RECF_VIBCH RecName: Full=DNA replication and repair protein recF gi|172047499|sp|A5F493|RECF_VIBC3 RecName: Full=DNA replication and repair protein recF gi|254790498|sp|C3LP87|RECF_VIBCM RecName: Full=DNA replication and repair protein recF gi|9654405|gb|AAF93192.1| recF protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|125621866|gb|EAZ50191.1| recF protein [Vibrio cholerae V51] gi|126509608|gb|EAZ72202.1| recF protein [Vibrio cholerae NCTC 8457] gi|126520567|gb|EAZ77790.1| recF protein [Vibrio cholerae B33] gi|146317437|gb|ABQ21976.1| recF protein [Vibrio cholerae O395] gi|227008139|gb|ACP04351.1| recF protein [Vibrio cholerae M66-2] gi|227011983|gb|ACP08193.1| recF protein [Vibrio cholerae O395] gi|229346196|gb|EEO11168.1| DNA recombination and repair protein RecF [Vibrio cholerae RC9] gi|229347047|gb|EEO12009.1| DNA recombination and repair protein RecF [Vibrio cholerae TMA 21] gi|229354137|gb|EEO19069.1| DNA recombination and repair protein RecF [Vibrio cholerae B33] gi|229354572|gb|EEO19494.1| DNA recombination and repair protein RecF [Vibrio cholerae BX 330286] gi|229369228|gb|ACQ59651.1| DNA recombination and repair protein RecF [Vibrio cholerae MJ-1236] gi|254847284|gb|EET25698.1| DNA replication and repair protein recF [Vibrio cholerae MO10] gi|297540071|gb|EFH76133.1| recombination protein F [Vibrio cholerae MAK 757] Length = 363 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 83/368 (22%), Positives = 156/368 (42%), Gaps = 12/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + F E + + R ++I + + +L + L + Sbjct: 61 IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S + ++A L +I+ R +N L + E + + P + L + + DQ Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 Y L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++ Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350 Query: 363 KFMRISNH 370 K +++ Sbjct: 351 KTFHVAHG 358 >gi|121587253|ref|ZP_01677026.1| recF protein [Vibrio cholerae 2740-80] gi|153802501|ref|ZP_01957087.1| recF protein [Vibrio cholerae MZO-3] gi|229520186|ref|ZP_04409613.1| DNA recombination and repair protein RecF [Vibrio cholerae TM 11079-80] gi|262189753|ref|ZP_06048108.1| DNA recombination and repair protein RecF [Vibrio cholerae CT 5369-93] gi|297581952|ref|ZP_06943872.1| recombination protein recF [Vibrio cholerae RC385] gi|121548499|gb|EAX58555.1| recF protein [Vibrio cholerae 2740-80] gi|124121971|gb|EAY40714.1| recF protein [Vibrio cholerae MZO-3] gi|229342780|gb|EEO07771.1| DNA recombination and repair protein RecF [Vibrio cholerae TM 11079-80] gi|262034367|gb|EEY52752.1| DNA recombination and repair protein RecF [Vibrio cholerae CT 5369-93] gi|297533819|gb|EFH72660.1| recombination protein recF [Vibrio cholerae RC385] Length = 363 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 83/368 (22%), Positives = 156/368 (42%), Gaps = 12/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + F E + + R ++I + + +L + L + Sbjct: 61 IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S + ++A L +I+ R +N L + E + + P + L + + DQ Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 Y L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++ Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350 Query: 363 KFMRISNH 370 K +++ Sbjct: 351 KTFHVAHG 358 >gi|297558989|ref|YP_003677963.1| DNA replication and repair protein RecF [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843437|gb|ADH65457.1| DNA replication and repair protein RecF [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 377 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 160/374 (42%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FR+Y + ++FVG NG GKTN++EAI +++ R +S + Sbjct: 1 MYVSHLQLADFRSYREALVEMGPGVSVFVGANGQGKTNLVEAIGYVATLGSHRVSSDTPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+P R + + + + LE R+ R +IN E+ LR Sbjct: 61 VRQGAPRAI---VRAKVVRDERSMVVDLELNPGRANRA-RINQAPAGRPREVLGILRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------E 175 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDDLLVARAPRMAGVRSDYDRVLKQRNALLKSASGRMFRQR 176 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFPHIKLSLTGFL 232 D S ++ +AE G ++ AR+E++ L I E P + +G + Sbjct: 177 SAPDLSTLEVWDSHLAETGAELLAARLELVEELRPRIAEAYAGLTDSGGPAVPDYRSGAV 236 Query: 233 DGKFDQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + L E + + R + +L+GPHR DL++ + S G Sbjct: 237 PEGVEPPTGRPQLVETLRAAMAEARDRELQRGVSLVGPHRDDLVLRLGGMPAK-GYASQG 295 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 E + + LA L+ + G P+L+LD++ A LD ++R L V D Q+ +T Sbjct: 296 ESWSYALSLKLAAFDLL-RSDGDDPVLILDDVFAELDSERRRRLAERVGDAE-QVLVTAA 353 Query: 351 DKSVFDSLNETAKF 364 + A+F Sbjct: 354 VPEDIPKELDGARF 367 >gi|261368841|ref|ZP_05981724.1| DNA replication and repair protein RecF [Subdoligranulum variabile DSM 15176] gi|282569111|gb|EFB74646.1| DNA replication and repair protein RecF [Subdoligranulum variabile DSM 15176] Length = 367 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 161/372 (43%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L +++ RN A L D T+ G NG GKTN+LEA+ L+ G+ FR A A++ Sbjct: 1 MRLEHLELTDHRNIAHAVLDPDPNLTVLCGPNGQGKTNLLEAVWLLTGGKSFRGAKDAEL 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S F +G E +++ R R ++N V L + + Sbjct: 61 IRRGCEFSVLEGFFETDGSEKTIRLTVGA-KGSQRPGRTAKLNGVDQGRAAALAGNFQAV 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181 P + + G RRRFLD + + + + + RL+ +N LL + Sbjct: 120 VFEPDLLALVKGGPEGRRRFLDSALCQVFRPYLVALRRYMRLVAQKNALLKSYDITPNGA 179 Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+A+ G +I R + + AL+ + + + + SL + Sbjct: 180 LLLDAYNEQLAQYGGQIMAHRQKFVEALAPAAAQNYAEISHGAEEFSLRYQCCAAAPTAD 239 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A+KL R + + L GPHR DL + + I GS G+Q+ ++ + Sbjct: 240 AL-----AEKLAALRSAELRAGFCLTGPHREDLDLQLDGQPARI-FGSQGQQRSCVLAMK 293 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA A ++ G P+LLLD++ + LD+D++ L + + Q +T D + F Sbjct: 294 LAEATVVGEFFGQHPVLLLDDVLSELDDDRQTYLLTRMGE--HQTIVTTCDTAAFA--RT 349 Query: 361 TAKFMRISNHQA 372 K + + QA Sbjct: 350 NGKIVYVKGGQA 361 >gi|229524915|ref|ZP_04414320.1| DNA recombination and repair protein RecF [Vibrio cholerae bv. albensis VL426] gi|229338496|gb|EEO03513.1| DNA recombination and repair protein RecF [Vibrio cholerae bv. albensis VL426] Length = 363 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 83/368 (22%), Positives = 156/368 (42%), Gaps = 12/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + F E + + R ++I + + +L + L + Sbjct: 61 IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S + ++A L +I+ R +N L + E + + P + L + + DQ Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 Y L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++ Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADGLKGTGAQVFVSSITESQVADMLDESS 350 Query: 363 KFMRISNH 370 K +++ Sbjct: 351 KTFHVAHG 358 >gi|239624130|ref|ZP_04667161.1| DNA replication and repair protein RecF [Clostridiales bacterium 1_7_47_FAA] gi|239520516|gb|EEQ60382.1| DNA replication and repair protein RecF [Clostridiales bacterium 1_7_47FAA] Length = 361 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 159/372 (42%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +RNY L + F+ I GDN GKTNILEA+ + + A D+ Sbjct: 1 MIIESIELKNYRNYQELHMEFNQGTNILYGDNAQGKTNILEAVYVCCTSKSHKSAKDRDI 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R S R + D+ +K + + IN V IR EL + Sbjct: 61 IRFDQDESHIKLQIRKNNVPYRIDMHLK-----KNKPKGIAINGVPIRKASELFGIANVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P I ERRRF+D + ++ + ++ + +++ RN+LL E +F + Sbjct: 116 FFSPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLLQRNKLLKELFFKPEYE 175 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G ++ R E I+ L+ +I + + + ++ Sbjct: 176 ETLDVWDMQLVNYGKEVIRFRREFIDRLNEIIQDIHLSLSGNKEAIRISY--------EP 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++++ + L R D + TL GPHR D+ I GS G+Q+ + + Sbjct: 228 YTLEDQFEQTLKKNRPQDMKQKTTLSGPHRDDISFIVNGIDIR-RFGSQGQQRTAALSLK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ L+ + PILLLD++ + LD ++N L + DI + I TG D V + + Sbjct: 287 LSELELVKAVSRDNPILLLDDVLSELDSSRQNHLLSAIQDIQTMITCTGLDDFVNNRFHI 346 Query: 361 TAKFMRISNHQA 372 K ++ + Sbjct: 347 D-KIFKVIDGTV 357 >gi|83950588|ref|ZP_00959321.1| recombination protein F [Roseovarius nubinhibens ISM] gi|83838487|gb|EAP77783.1| recombination protein F [Roseovarius nubinhibens ISM] Length = 369 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 193/365 (52%), Gaps = 11/365 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L D + GDNG GKTN++EA+S +SPGRG RRA+ D+ Sbjct: 4 LYLSELKLSHFRSHLGSALQLDPRPVAIHGDNGSGKTNLIEAVSLISPGRGLRRAAAQDM 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + + + ++ I E + R +I+ V L + R+ W Sbjct: 64 GRQPEALGWKLRGVLHSLHQVHELEIWSE---GGAARQTRIDGKPAAQVA-LARIARVLW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+PSMDR++ + RRRFLDRMV + P H + +E+ MR RNRLL + D W Sbjct: 120 LIPSMDRLWIEGAEGRRRFLDRMVMSFVPDHADVTLAYEKAMRERNRLLKDQVRDGHWYV 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E QMAE G+ I R +I+ L+ + FP L+L + + + Sbjct: 180 ALERQMAEAGLAIQANRQRVIDRLAQ--AQEGAATAFPAADLTLE-----MAEGALPDGE 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EY L +GR+ D + RTL+GPHR+DL Y K + STGEQK +LV + LA+ Sbjct: 233 AEYRDALSEGRRRDLAAGRTLLGPHRADLQGVYAAKGVAAKDCSTGEQKALLVSLILANG 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R + G PILLLDE++AHLD +R AL+ + +GSQ +MTGT +F L A+ Sbjct: 293 RALREDFGAPPILLLDEVAAHLDAGRRAALYDEICALGSQAWMTGTGPELFAELGARAQH 352 Query: 365 MRISN 369 + + Sbjct: 353 VEVRE 357 >gi|312873299|ref|ZP_07733354.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2052A-d] gi|311091179|gb|EFQ49568.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF 2052A-d] Length = 373 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ Sbjct: 1 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A + G +I L+ + IN + + + + Sbjct: 61 IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237 + + + Q+A L ++ RV ++ L + + L + F + Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S + ++ + + TL+GPHR DL V + +K + S G+Q+ +++ Sbjct: 236 DSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356 I LA L+ PILLLD++ + LD ++ L + +Q F+T TD S+ Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353 Query: 357 SLNETAKFMRISNHQA 372 + + + RI + Sbjct: 354 EMIKIPRIFRIVSGTV 369 >gi|238018220|ref|ZP_04598646.1| hypothetical protein VEIDISOL_00044 [Veillonella dispar ATCC 17748] gi|237864691|gb|EEP65981.1| hypothetical protein VEIDISOL_00044 [Veillonella dispar ATCC 17748] Length = 366 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 164/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY + + F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVTIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + E + ++IKL + + +++ND I EL L Sbjct: 61 LMFNAEEA-GIVVKFEKKDTPQKVNIKLFRQGP---KDIRLNDTKI-SQKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RRRFLD + + +++ + RL++ RN +L E + Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAILKEYRGKQNIPL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A++ I R+E + ++ LI +K L++ + S Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYT 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + +++ D T +GPHR DL + D GS G+Q+ ++ + L+ Sbjct: 236 KEGFYERIKAALPQDRHRMTTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 I + G P+LLLD++ + LDE +R L + + Q F+T TD F L + + Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRANLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352 Query: 364 FMRISNHQA 372 F+ + Sbjct: 353 FISCEGGKV 361 >gi|317494669|ref|ZP_07953081.1| DNA replication and repair protein RecF [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917271|gb|EFV38618.1| DNA replication and repair protein RecF [Enterobacteriaceae bacterium 9_2_54FAA] Length = 358 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 152/370 (41%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLTIRDFRNIESADLAPAEGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R F R++ G E + + D VR I+ V EL + L + Sbjct: 61 IRHDQNEF-VLHGRIDTGAERELSVGLSKSRAGDSKVR---IDGSDGHKVAELAQMLPMQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + +G RR FLD F DP + +RL++ RN L + S Sbjct: 117 LITPEGFTLLNGGPKFRRAFLDWGCFHSDPGFFVAWSNLKRLLKQRNAALRQ-VTRYSQL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ L +I+ R + A++ I + P L+ + + Sbjct: 176 RPWDQELIPLAERISALRAQYSAAIAEDISATCA-QFLPEFALTFSFQRGWDKES----- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +Y + L + D T +GPH++D + + S G+ K+++ + LA Sbjct: 230 --DYVELLERQFERDRALTYTAVGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQ 286 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362 ++ +G + L+D+ ++ LD +R L + G+Q+F++ + V D ++E Sbjct: 287 GEYLTRHSGRRCLYLIDDFASELDTGRRRLLADRLKATGAQVFVSAVSAEQVSDMVDEKG 346 Query: 363 KFMRISNHQA 372 K R+ + Sbjct: 347 KMFRVEQGKI 356 >gi|319936687|ref|ZP_08011100.1| DNA replication and repair protein recF [Coprobacillus sp. 29_1] gi|319808244|gb|EFW04809.1| DNA replication and repair protein recF [Coprobacillus sp. 29_1] Length = 369 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 91/373 (24%), Positives = 164/373 (43%), Gaps = 17/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + + FRNY + F IF+G N GKTN+LEAI LS + F+ + Sbjct: 1 MKINHIELKNFRNYKDCSVDFAPFINIFIGKNAQGKTNLLEAIYILSLSKSFKTKVIEEF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FA++ G + I LE + + IN I+ + +L + Sbjct: 61 IYFNED-----FAKIHGRVNSHEKDIDLEVVLSKYGKKAIINHKEIKKTSDYVGYLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 +P + G RR+ +D + I P + + + +L++ RN+ L + Sbjct: 116 FIPEDLMLIKGSPRLRRKLMDMEISKISPIYMYNLNKYNKLLKERNKYLKMLHEKHRRYD 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + QMA L V + R+E ++ L+ + + KL + + D S+ Sbjct: 176 EYLDVLSEQMARLQVDLIKKRIEFVDLLNDISSTMYDYISLHKEKLRIE-YKCIYKDLSY 234 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + E+Y K + D +T+ G H+ D+++ DK +A+ S G+Q+ +++ I Sbjct: 235 EGILEKYQK----NYQRDISYSQTVDGLHKDDMLMSLDDKD-AVAYASQGQQRSIVLAIK 289 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLN 359 + LI G PILLLD++ + LD+ ++ L ++ Q F+T T V + Sbjct: 290 IGLLELIKKEIGEYPILLLDDVLSELDDVRKTKLLNLIQGK-VQTFLTSTSIDGVHHQVI 348 Query: 360 ETAKFMRISNHQA 372 + AK + I + Q Sbjct: 349 DMAKKIMIEDGQV 361 >gi|116326858|ref|YP_796578.1| recombinational DNA repair ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329805|ref|YP_799523.1| recombinational DNA repair ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282419|sp|Q04WF5|RECF_LEPBJ RecName: Full=DNA replication and repair protein recF gi|122285291|sp|Q056V0|RECF_LEPBL RecName: Full=DNA replication and repair protein recF gi|116119602|gb|ABJ77645.1| Recombinational DNA repair ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123494|gb|ABJ74765.1| Recombinational DNA repair ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 365 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 99/372 (26%), Positives = 172/372 (46%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FR+Y L L F+++ FVGDNG GKTN+LEAI LS + FR + +++ Sbjct: 1 MFLKHLTLQNFRSYEELSLDFNSRLIFFVGDNGEGKTNLLEAICMLSWLKSFRESEDSNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS ++F +++G + + + + + R L+ N ++ +L Sbjct: 61 IRWGSENYF-LRGKIKGDQKESVLEVGFTAKPTVK-RKLKFNQEEVKKRTDLIGKFITVL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P +I G ERR+F+D + + DP + ++++ ++++ RN LL G D+S S Sbjct: 119 LTPMDLKIIEGGPAERRKFIDAFISSFDPFYLECLLEYNKILKHRNALLKTGISDASHLS 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ E GV I R E++ L+S + K + +L + + K K Sbjct: 179 IWDRKLIEKGVLILNKRKEIVFGLNSFYQPNLNKLSGGKDELEMIYGPNVKD-------K 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +E+ +KL D T +G HR DL + DK GS G+++ ++ + A Sbjct: 232 DEFVEKLGRNLGKDLRLGYTSVGIHRDDLFIG-ADKRDITEFGSQGQKRSTVIALKAATF 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS----LNE 360 N P+LL+D++ LD +R +V + G Q F T TD L + Sbjct: 291 NYYRNVLDTMPVLLIDDVIRELDVKRREYFVDLVINAG-QAFFTTTDLEGIQDYVGKLKD 349 Query: 361 TAKFMRISNHQA 372 + I Sbjct: 350 QKQIFLIQQGNI 361 >gi|260753853|ref|YP_003226746.1| recombination protein F [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553216|gb|ACV76162.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 376 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 136/376 (36%), Positives = 205/376 (54%), Gaps = 8/376 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L++ +FR++ +RL +A I G+NGVGKTNILEAIS LSPGRGFR + D+ Sbjct: 1 MFISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R F+ A++ +E I +I + S R +++N V + L++ L Sbjct: 61 VRREGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTT-SANALSEWLA 119 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDS 180 I WL P+MDR+F + RRRFLDR+ I P H R +E MR RN+LL+ E +D Sbjct: 120 ILWLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGYDP 179 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQ 238 W +E MAE I +AR ++++ LS I + + F L+L +D + Sbjct: 180 LWLDGLEQIMAEQATHILLARRQLVDLLSEEIAKQ-EDGLFAKADLALEEGVDSRDLVTH 238 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + R D+ RTL G HR+DL V + KA+ A STGEQK +L+G Sbjct: 239 NSEEIMPLLQNIWQKSRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGEQKALLLG 298 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA LI+ G P+LLLDE++AHLD +R LF I+ G Q++MTGT+ S+F++ Sbjct: 299 LVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLFETA 358 Query: 359 NETAKFMRISNHQALC 374 + A + ++ + + Sbjct: 359 EDAACYFQLDKGEIIS 374 >gi|242237463|ref|YP_002985644.1| recombination protein F [Dickeya dadantii Ech703] gi|242129520|gb|ACS83822.1| DNA replication and repair protein RecF [Dickeya dadantii Ech703] Length = 361 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR A V Sbjct: 1 MALTRLLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F R+ G E + + D +VR I+ V EL + L I Sbjct: 61 IRHDQAEFI-LHGRIAGAERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL+R RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFMAWSNLKRLLRQRNAALRQVNH-YGQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R E A+++ I + P LS + + Sbjct: 176 AWDQELVPLAERISQWRAEYSAAIATDIASTCA-QFLPEFSLSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T +GPH++D + A+ S G+ K+++ + LA Sbjct: 229 -DYAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 ++ G + L+D+ ++ LD +R L + +Q+F++ T + + D + E K Sbjct: 287 EFLTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|294794200|ref|ZP_06759336.1| DNA replication and repair protein RecF [Veillonella sp. 3_1_44] gi|294454530|gb|EFG22903.1| DNA replication and repair protein RecF [Veillonella sp. 3_1_44] Length = 366 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 92/369 (24%), Positives = 166/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY +++ F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + E + ++IKL + + +++ND I EL L Sbjct: 61 LMFNAEEA-GIVVKFEKKDTPQKVNIKLFRQGP---KDIRLNDTKI-SQKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RRRFLD + + +++ + RL++ RN +L E ++ Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A++ I R+E + ++ LI +K L++ + S Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYT 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + +++ D T +GPHR DL + D GS G+Q+ ++ + L+ Sbjct: 236 KEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 I + G P+LLLD++ + LDE +R L + + Q F+T TD F L + + Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352 Query: 364 FMRISNHQA 372 F+ Q Sbjct: 353 FISCEGGQV 361 >gi|320009753|gb|ADW04603.1| DNA replication and repair protein RecF [Streptomyces flavogriseus ATCC 33331] Length = 376 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 96/373 (25%), Positives = 161/373 (43%), Gaps = 20/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A +G I+LE R+ R +R D L +R Sbjct: 61 VRMGAERAVVRAAVTQGERSQL---IELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233 D S + + +G ++ R+++I L L + + L + Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYADVAPGGGPVTLEYRSSVG 236 Query: 234 GKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + + ++ L E+ L RK + TL+GPHR DL++ + S GE Sbjct: 237 DEVEPARTREELYEQVMAALVQARKQEIERGVTLVGPHRDDLVLGLRGMPAK-GYASHGE 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 296 SWSYALALRLASYDLLRTE-GNEPVLVLDDVFAELDARRRERLAELVA-PGEQVLVTAAV 353 Query: 352 KSVFDSLNETAKF 364 + A++ Sbjct: 354 DDDVPGVLAGARY 366 >gi|157144342|ref|YP_001451661.1| recombination protein F [Citrobacter koseri ATCC BAA-895] gi|166220702|sp|A8ACL2|RECF_CITK8 RecName: Full=DNA replication and repair protein recF gi|157081547|gb|ABV11225.1| hypothetical protein CKO_00046 [Citrobacter koseri ATCC BAA-895] Length = 357 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R SF R++G E I + + D VR I+ V EL + + Sbjct: 61 IRHEQESF-VLHGRLQGEERETAIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E ++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D ++ +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|170748658|ref|YP_001754918.1| DNA replication and repair protein RecF [Methylobacterium radiotolerans JCM 2831] gi|170655180|gb|ACB24235.1| DNA replication and repair protein RecF [Methylobacterium radiotolerans JCM 2831] Length = 384 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 140/369 (37%), Positives = 201/369 (54%), Gaps = 4/369 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + +++ L +FRN+A L L A+ VG+NG GKTN+LEA+S PGRG RRA +A Sbjct: 14 SSLRVTRLIARDFRNHADLELTPRARFVALVGENGAGKTNLLEALSLFVPGRGLRRAEFA 73 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHL 120 + R G P F+ ++ + LE D R+ R +I+ ++ L Sbjct: 74 AMARSGGPGGFAVSLTLDREGAEHRLGTGLEPPGPDGRASRLCRIDGATAASPVAFSEFL 133 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 R+ WL P +D +F G + +RRRFLDR+V A+D H R+ ER +R RNRLL E D Sbjct: 134 RVVWLTPDLDGLFRGAAGDRRRFLDRLVLAVDAAHGARVSAMERALRSRNRLLEERPDDD 193 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQ- 238 W ++E ++AELGV + +AR E L LI E + FP + L G LD Sbjct: 194 RWLDAVEREVAELGVAVALARRETAERLDRLIAETRDDAQPFPWAAIRLEGDLDDLVAVW 253 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 ++ Y L +GR D + RTLIGP SDL+V + K + STGEQK +L+G Sbjct: 254 PAIEAEDRYRMALRNGRNRDRAAGRTLIGPQSSDLVVRHGPKDVPAGTASTGEQKALLIG 313 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LAHARL+ +G AP++LLDE++AHLD +R LF + + Q++MTG D F Sbjct: 314 LVLAHARLVRAMSGIAPLILLDEVAAHLDPRRRAGLFEALEALPGQVWMTGADPGAFAQA 373 Query: 359 NETAKFMRI 367 + +RI Sbjct: 374 GTRTEVLRI 382 >gi|239942667|ref|ZP_04694604.1| recombination protein F [Streptomyces roseosporus NRRL 15998] gi|239989126|ref|ZP_04709790.1| recombination protein F [Streptomyces roseosporus NRRL 11379] gi|291446128|ref|ZP_06585518.1| recombination protein F [Streptomyces roseosporus NRRL 15998] gi|291349075|gb|EFE75979.1| recombination protein F [Streptomyces roseosporus NRRL 15998] Length = 376 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 162/381 (42%), Gaps = 21/381 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGITAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A +G ++LE R+ R +R D L +R Sbjct: 61 VRMGAERAVIRAAVTQGERSQL---VELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 P + G ERRRFLD +V A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 D S + + +G ++ R+++I L L + ++L Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVG 236 Query: 236 FDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 D + ++E ++L RK + TL+GPHR DL++ + S GE Sbjct: 237 EDVGPESTRDELYEQLMAALAGVRKQEIERGVTLVGPHRDDLLLGLRGMPAK-GYASHGE 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + LA L+ + G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 296 SWSYALALRLASYELLRSE-GNEPVLVLDDVFAELDARRRERLAELVA-PGEQVLVTAAV 353 Query: 352 KSVFDSLNETAKFMRISNHQA 372 + +S + Sbjct: 354 ADDVPGVL-AGTRYAVSAGEV 373 >gi|294792394|ref|ZP_06757541.1| DNA replication and repair protein RecF [Veillonella sp. 6_1_27] gi|294456293|gb|EFG24656.1| DNA replication and repair protein RecF [Veillonella sp. 6_1_27] Length = 366 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 92/369 (24%), Positives = 165/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY +++ F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLYGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + E + ++IKL + + +++ND I EL L Sbjct: 61 LMFNVEEA-GIVVKFEKKDTPQKVNIKLFRQGP---KDIRLNDTKI-SQKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RRRFLD + + +++ + RL++ RN +L E ++ Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A++ I R+E + ++ LI +K L++ + S Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYT 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + +++ D T +GPHR DL + D GS G+Q+ ++ + L+ Sbjct: 236 KEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 I + G P+LLLD++ + LDE +R L + + Q F+T TD F L + + Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352 Query: 364 FMRISNHQA 372 F+ Q Sbjct: 353 FISCEGGQV 361 >gi|298246029|ref|ZP_06969835.1| DNA replication and repair protein RecF [Ktedonobacter racemifer DSM 44963] gi|297553510|gb|EFH87375.1| DNA replication and repair protein RecF [Ktedonobacter racemifer DSM 44963] Length = 401 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 168/396 (42%), Gaps = 31/396 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FRNY L L F G+N GKTN+LEA+S L+ F +S +V Sbjct: 1 MYLTHLTLEYFRNYKHLDLTLGPGLFFFCGENAQGKTNLLEAVSMLATATSFHASSDREV 60 Query: 65 TRIGSPSFFS-TFARVEGMEGLADISI---------------------KLETRDDRSVRC 102 +P + RV E A I I L+ + + Sbjct: 61 VNWQAPDHVAHLQGRVSRHEDDAQIEISVFDPTPPTFSQDDTSQQTSRGLDLPANTPRKR 120 Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 ++N V R +D + +++ P + G ERRRF DR + + P + + ++ + Sbjct: 121 YKLNGVPRRTID-IIGQMKVVLFAPVDLHLVDGSPEERRRFFDRALCQVSPHYCQALVRY 179 Query: 163 ERLMRGRNRLLTEGY---FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 +++ R+ LL D ++ Q+ +L +I R M+ +++ L Q Sbjct: 180 RKVVTQRSALLKRIRDHQEDPRLIDYLDDQLTQLANQIMHERHHMLTSINQLANPLQQAI 239 Query: 220 NFPHIKLSLTGFLDGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 + +L + D+S ++ Y ++L R+ ++M L+GPHR DL Sbjct: 240 SGGRERLEIIYRPSFSVDESLSLPEAQKHYQQQLQAIRRKETMQGVCLLGPHRDDLEFLV 299 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + +++GS G+Q+ + LA + + TG P+LLLD++ + LD +R L + Sbjct: 300 NGVNM-LSYGSRGQQRTAALSTKLAELAFMRSNTGDEPVLLLDDVFSELDAVRRQYLLQE 358 Query: 338 VTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNHQA 372 V Q+ +T TD F + + A + + Sbjct: 359 VLSHQ-QVLLTATDLESFPPEIAQKAHIYHVQHGNI 393 >gi|329938635|ref|ZP_08288031.1| DNA recombination and repair protein RecF [Streptomyces griseoaurantiacus M045] gi|329302126|gb|EGG46018.1| DNA recombination and repair protein RecF [Streptomyces griseoaurantiacus M045] Length = 373 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 102/380 (26%), Positives = 168/380 (44%), Gaps = 22/380 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + DA T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYAHVEVPLDAGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE R+ R +R D L +R Sbjct: 61 VRMGAERAI---VRAQVRQGERQQLLELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176 Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233 D S + +A G ++ R+++I AL L + ++ + L Sbjct: 177 RSLDLSTLDVWDQHLARAGAELLARRLDLIAALRPLTDKAYEQLAPGGGPVGLEYRPSAP 236 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G+ + L E+ L + RK + TL+GPHR DL++ + + S GE Sbjct: 237 GE-AHTREDLHEQLLAALAEARKQEIERGVTLVGPHRDDLLLKL-GQLPAKGYASHGESW 294 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDK 352 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 295 SYALALRLASYDLLRAE-GNEPVLVLDDVFAELDVRRRERLAELVA-PGEQVLVTAAVDD 352 Query: 353 SVFDSLNETAKFMRISNHQA 372 V D L +S Sbjct: 353 DVPDVL--AGARYTVSGGTV 370 >gi|254467269|ref|ZP_05080680.1| DNA replication and repair protein RecF [Rhodobacterales bacterium Y4I] gi|206688177|gb|EDZ48659.1| DNA replication and repair protein RecF [Rhodobacterales bacterium Y4I] Length = 365 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 200/365 (54%), Gaps = 11/365 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L FD + G+NG GKTNILEA+S SPGRG RRAS A++ Sbjct: 2 LALTALTLSHFRSHLRAELRFDGRPVAIYGNNGAGKTNILEAVSLFSPGRGLRRASAAEM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + ++ E + R ++I++ + L + R+ W Sbjct: 62 ARQPEALGWKLKGELRAPRQAYEVETWSE---GGAARQVKIDNKSASQLA-LGQVARVVW 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MDR++ + RRRFLDR+ + +P H + +E+ MR RNRLL E D++W Sbjct: 118 LIPAMDRLWIEAAEGRRRFLDRIALSFEPGHAEASLVYEKAMRERNRLLKEQVRDAAWYR 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +E +MA G +I+ ARV+ + L E + FP +L L + S + + Sbjct: 178 VLEDRMAAAGHRIHAARVQAVELLQQAQAE--AETAFPAAELELLQS-----EGSMPSSE 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ + L + R D + RTL+GPHR+DL+ Y K I STGEQK +LV + LA+A Sbjct: 231 TDFKEALEESRFRDLAAGRTLVGPHRTDLLGTYRAKGIPAKDCSTGEQKALLVSLILANA 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G PILLLDE++AHLD +R AL+ + +G+Q +MTGT +F L A+ Sbjct: 291 RALAQREGAPPILLLDEVAAHLDAGRRAALYDEICALGTQAWMTGTGPELFAELEGRAQV 350 Query: 365 MRISN 369 + +S+ Sbjct: 351 LEVSD 355 >gi|303237205|ref|ZP_07323775.1| DNA replication and repair protein RecF [Prevotella disiens FB035-09AN] gi|302482592|gb|EFL45617.1| DNA replication and repair protein RecF [Prevotella disiens FB035-09AN] Length = 371 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 168/376 (44%), Gaps = 19/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L A+ F+G NGVGKTN+L+A+ +LS + ++V Sbjct: 1 MRLDKLSIINYKNIQAATLNLSAKLNCFIGHNGVGKTNLLDAVYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F E + ++ ++ + + + N + + E L + + Sbjct: 61 MCHESDFFVLEGDYTMDSEEIEQVTCGMKRG---TKKHFKRNRKAYKKLSEHIGLLPLIF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + PS + G S ERR+ +D ++ D + ++ + + ++ RN LL E D++ Sbjct: 118 VSPSDISLIEGGSEERRKLMDVVISQYDRPYIETLLRYNKALQQRNSLLKQEEEPDTTLL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QMAE G +I R + L + E Q + ++SL G+ Sbjct: 178 ELLEMQMAEYGTEIYKKRAAFVEQLVPVFQEIYQAISQNREQVSLEYISHGQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + R D + +L G H+ DL++ + GS G+ K ++ + LA Sbjct: 230 RGDLLDVIQRDRAKDRIMGYSLHGIHKDDLLMTLGGFPMKRE-GSQGQNKTFVLALKLAQ 288 Query: 304 ARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + T G P+LLLD+I LD D+ + ++V D QIF+T T++ D + + Sbjct: 289 FNFLKQTAGNRTPLLLLDDIFDKLDADRVEQIVKLVAGDSFGQIFITDTNRDHLDKILSS 348 Query: 362 A----KFMRISNHQAL 373 + K + N + + Sbjct: 349 SNFDYKLFAVENGEII 364 >gi|23428630|gb|AAM12398.1| recombinase F [Zymomonas mobilis subsp. mobilis CP4] Length = 376 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 136/376 (36%), Positives = 205/376 (54%), Gaps = 8/376 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L++ +FR++ +RL +A I G+NGVGKTNILEAIS LSPGRGFR + D+ Sbjct: 1 MFISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R F+ A++ +E I +I + S R +++N V + L++ L Sbjct: 61 VRREGDGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTT-SANALSEWLA 119 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDS 180 I WL P+MDR+F + RRRFLDR+ I P H R +E +R RN+LL+ E +D Sbjct: 120 ILWLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAIRQRNKLLSDEKGYDP 179 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQ 238 W +E MAE I +AR ++++ LS I + + F L+L +D + Sbjct: 180 LWLDGLEQIMAEQATHILLARRQLVDLLSEEIAKQ-EDGLFAKADLALEEGVDSRDLVTH 238 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + R D+ RTL G HR+DL V + KA+ A STGEQK +L+G Sbjct: 239 NSEEIMPLLQNIWQKSRTSDAAIGRTLQGVHRTDLKVTHHAKAMPAAQSSTGEQKALLLG 298 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA LI+ G P+LLLDE++AHLD +R LF I+ G Q++MTGT+ S+F++ Sbjct: 299 LVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLFETA 358 Query: 359 NETAKFMRISNHQALC 374 E A + ++ + + Sbjct: 359 GEAACYFQLDKGEIIS 374 >gi|288932895|ref|YP_003436954.1| DNA replication and repair protein RecF [Klebsiella variicola At-22] gi|288887624|gb|ADC55942.1| DNA replication and repair protein RecF [Klebsiella variicola At-22] Length = 357 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E A+ + + Q + P L+ + + + Sbjct: 176 PWDLELIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D ++ +K Sbjct: 287 EFLTRVSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEKGKI 355 >gi|206579462|ref|YP_002235888.1| DNA replication and repair protein RecF [Klebsiella pneumoniae 342] gi|290511691|ref|ZP_06551059.1| DNA replication and repair protein recF [Klebsiella sp. 1_1_55] gi|226737806|sp|B5XT53|RECF_KLEP3 RecName: Full=DNA replication and repair protein recF gi|206568520|gb|ACI10296.1| DNA replication and repair protein RecF [Klebsiella pneumoniae 342] gi|289775481|gb|EFD83481.1| DNA replication and repair protein recF [Klebsiella sp. 1_1_55] Length = 357 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E A+ + + Q + P L+ + + + Sbjct: 176 PWDLELIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D ++ +K Sbjct: 287 EFLTRVSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEKGKI 355 >gi|152972607|ref|YP_001337753.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330005215|ref|ZP_08305174.1| DNA replication and repair protein RecF [Klebsiella sp. MS 92-3] gi|166220712|sp|A6TG02|RECF_KLEP7 RecName: Full=DNA replication and repair protein recF gi|150957456|gb|ABR79486.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328536347|gb|EGF62709.1| DNA replication and repair protein RecF [Klebsiella sp. MS 92-3] Length = 357 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQDAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E A+ + + Q + P L+ + + + Sbjct: 176 PWDLELIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D ++ +K Sbjct: 287 EFLTRVSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEKGKI 355 >gi|332685538|ref|YP_004455312.1| DNA recombination and repair protein RecF [Melissococcus plutonius ATCC 35311] gi|332369547|dbj|BAK20503.1| DNA recombination and repair protein RecF [Melissococcus plutonius ATCC 35311] Length = 353 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 159/355 (44%), Gaps = 14/355 (3%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 + F IF+G+N GKTN+LE+I L+ R R + ++ + A++ G Sbjct: 1 MNFSKNLNIFLGENAQGKTNLLESIYVLAMTRSHRTNNEKELIQWQE-----LQAKINGS 55 Query: 83 EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142 +I LE + R +IN + + + L + P + G RR+ Sbjct: 56 IDKYSGTIPLEIQLSNKGRKTKINYIEQKRLSAYIGQLNVILFAPEDLSLVKGPPQIRRK 115 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKIN 198 F++ + +D + ++ ++ +++ RN+ L + D + + Q+AE G K+ Sbjct: 116 FINMELGQVDLVYLHNLVQYQGVLKHRNQYLKQLAEKKEKDFLYLDILSEQLAEFGSKVL 175 Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--SFCALKEEYAKKLFDGRK 256 +AR+ +I L + +K + +L++T + L++E+ ++L + RK Sbjct: 176 LARLSLIKKLEYWANQLHKKISHDKEQLTITYSSSITLPTILTQETLQQEFLRQLKENRK 235 Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316 + T IGPHR DLI + D+ + I +GS G+Q+ + I LA + G PI Sbjct: 236 RELFKMTTFIGPHRDDLIFNINDQNVQI-YGSQGQQRTTALSIKLAEIDWMHEELGEYPI 294 Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNH 370 LLLD++ + LD +++ L + Q F+T T+ D L + Sbjct: 295 LLLDDVMSELDNERQLHLLETIEGK-VQTFLTTTNLEHLTDKLTVEPDIFTVHKG 348 >gi|182437496|ref|YP_001825215.1| recombination protein F [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778151|ref|ZP_08237416.1| DNA replication and repair protein recF [Streptomyces cf. griseus XylebKG-1] gi|226737838|sp|B1VPF3|RECF_STRGG RecName: Full=DNA replication and repair protein recF gi|178466012|dbj|BAG20532.1| putative DNA recombination and repair protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658484|gb|EGE43330.1| DNA replication and repair protein recF [Streptomyces cf. griseus XylebKG-1] Length = 376 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 165/384 (42%), Gaps = 21/384 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A +G I+LE R+ R +R D L +R Sbjct: 61 VRMGAERAVIRAAVTQGERSQL---IELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 D S + + +G ++ R+++I L L + ++L Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVG 236 Query: 236 FDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 D ++E ++L RK + TL+GPHR DL++ + S GE Sbjct: 237 GDVGPARTRDELYEQLTAALVGVRKQEIERGVTLVGPHRDDLLLGLRGMPAK-GYASHGE 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + LA L+ + G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 296 SWSYALALRLASYELLRSE-GNEPVLVLDDVFAELDARRRERLAELVV-PGEQVLVTAAV 353 Query: 352 KSVFDSLNETAKFMRISNHQALCI 375 + A++ +S + + Sbjct: 354 AEDVPGVLAGARY-AVSAGEVARV 376 >gi|15673957|ref|NP_268132.1| recombination protein F [Lactococcus lactis subsp. lactis Il1403] gi|281492578|ref|YP_003354558.1| DNA replication and repair protein RecF [Lactococcus lactis subsp. lactis KF147] gi|13959468|sp|Q9CE70|RECF_LACLA RecName: Full=DNA replication and repair protein recF gi|12725018|gb|AAK06073.1|AE006427_8 RecF protein [Lactococcus lactis subsp. lactis Il1403] gi|281376242|gb|ADA65733.1| DNA replication and repair protein RecF [Lactococcus lactis subsp. lactis KF147] Length = 358 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 155/370 (41%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K + + FRNY L+L F IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +V G+ A ++ LE + R + N + + + L+I Sbjct: 61 ISWSQQEM-----KVSGVVEKAHATVPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RR+F+D + I + + + R ++ RN L + D ++ Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S ++ Q+AE G KI + R I+ L + ++ L + + K D Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTD----- 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++K+L + D +T +GPHR DL + + GS G+Q+ V + I LA Sbjct: 231 ----FSKELLSRQDHDIFRHQTSVGPHRDDLQFFINEINV-ADFGSQGQQRTVALSIKLA 285 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 LI TG PILLLD++ + LD ++ L T +L E Sbjct: 286 EIDLIFEETGEYPILLLDDVMSELDNHRQLDLIETSLGKTQTFIT-TTTLDHLKNLPENL 344 Query: 363 KFMRISNHQA 372 ++ Sbjct: 345 SIFHVNAGTI 354 >gi|238917986|ref|YP_002931500.1| recombination protein F [Edwardsiella ictaluri 93-146] gi|259563363|sp|C5BHC7|RECF_EDWI9 RecName: Full=DNA replication and repair protein recF gi|238867554|gb|ACR67265.1| DNA replication and repair protein RecF [Edwardsiella ictaluri 93-146] Length = 358 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 147/370 (39%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLVIRDFRNIEEADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R S F R++ G + + + + D VR I+ V EL + L + Sbjct: 61 IRHDC-SAFVLHGRIDDGGGRERAVGLSKDRQGDSKVR---IDGSDGHKVAELAQMLPMQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + +G RR FLD F + + R+++ RN L + + Sbjct: 117 LITPEGFTLLNGGPKYRRAFLDWGCFHGERSFFTAWNNLRRVLKQRNAALRQ-VTRYAQI 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ L +++ R A++ I + P LS + + Sbjct: 176 RPWDQELVPLAEQVSALRAAYSEAIAQDIAATCS-QFLPEYALSFSFMRGWDRES----- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +YA L + D T GPH++D + D S G+ K+++ + LA Sbjct: 230 --DYAALLERHFERDRALTYTAQGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQ 286 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA 362 ++ +G + L+D+ ++ LD +R L + G+Q+F++ + D ++E Sbjct: 287 GEYLTRHSGRQCLYLIDDFASELDAGRRRLLAERLKSTGAQVFVSAVNADQIGDMVDEKG 346 Query: 363 KFMRISNHQA 372 K + + Sbjct: 347 KMFHVEQGKI 356 >gi|29830862|ref|NP_825496.1| recombination protein F [Streptomyces avermitilis MA-4680] gi|51316400|sp|Q82FD5|RECF_STRAW RecName: Full=DNA replication and repair protein recF gi|29607975|dbj|BAC72031.1| putative DNA recombination and repair protein [Streptomyces avermitilis MA-4680] Length = 373 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 166/379 (43%), Gaps = 20/379 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + + ++LE ++ R +R D L +R Sbjct: 61 VRMGAERAII---RAQVRQDERRQLVELELNPGKANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALIKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKTAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 D S + +A G ++ R+++I AL L + ++ ++L Sbjct: 177 RSMDLSTLDVWDQHLARAGAELLAQRLDLIAALQPLADKAYEQLAPGGGPIALEYKPSAP 236 Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + AL E+ L + RK + TL+GP R +L++ + + S GE Sbjct: 237 GEAHTRDALYEQLMAALAEARKQEIERGVTLVGPQRDELLLKL-GQLPAKGYASHGESWS 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 296 YALALRLASYDLLRAE-GNEPVLVLDDVFAELDTRRRERLAELVA-PGEQVLVTAAVDDD 353 Query: 354 VFDSLNETAKFMRISNHQA 372 V L T +S Sbjct: 354 VPGVLAGT--RYTVSEGTV 370 >gi|238897210|ref|YP_002921958.1| recombination protein F [Klebsiella pneumoniae NTUH-K2044] gi|238549540|dbj|BAH65891.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 357 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIEHADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQDAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E A+ + + Q + P L+ + + + Sbjct: 176 PWDLELIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D ++ +K Sbjct: 287 EFLTRVSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEKGKI 355 >gi|332884241|gb|EGK04509.1| hypothetical protein HMPREF9456_00836 [Dysgonomonas mossii DSM 22836] Length = 369 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 162/377 (42%), Gaps = 21/377 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L+I ++N L + F+G NG+GKTN+L+AI +LS + + Sbjct: 1 MILERLSILNYKNIEQAELNLSPKINCFLGSNGMGKTNLLDAIYYLSFCKSHNNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRCLQINDVVIRVVDELNKHLRIS 123 R + FA ++G L D + + + + N + + L + Sbjct: 61 IRHDAD-----FAVIQGWYVLGDKQEEFFCSLRRKQKKQFKRNKKEYERLSDHIGFLPLI 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + PS + +G S ERR+F+D + D + +I + + ++ RN LL + Y D + Sbjct: 116 MVSPSDTELINGGSDERRKFMDMFLSQFDKEYLHSLIRYNKALQQRNALLKTDSYIDETL 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+ E G I R + I + + + K+ L + FD + Sbjct: 176 FDLWDEQLIEEGKIIYSKRKDFIEKFIPIFQRFYDFICLSNEKVELRY--ESHFDDA--- 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++A+ L R+ D + T IG H+ DL + +I GS G+ K +V + LA Sbjct: 231 ---DFARSLKQKRERDRILGYTSIGVHKDDLDMQMDGYSIKRV-GSQGQNKTYVVALKLA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 287 QFDFLRKATETTPVLLLDDIFDKLDSTRVEQIVKLVLDKDFGQIFVTDTNREHLDEILSH 346 Query: 359 -NETAKFMRISNHQALC 374 N + +S + + Sbjct: 347 TNSSYHLYEVSGGEVVQ 363 >gi|260771049|ref|ZP_05879977.1| DNA recombination and repair protein RecF [Vibrio furnissii CIP 102972] gi|260613938|gb|EEX39129.1| DNA recombination and repair protein RecF [Vibrio furnissii CIP 102972] gi|315178624|gb|ADT85538.1| DNA replication and repair protein RecF [Vibrio furnissii NCTC 11218] Length = 359 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 76/369 (20%), Positives = 152/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN + + + +G NG GKT++LEAI L GR F+ V Sbjct: 1 MPLTRLIVQQFRNIKACDIPLSSGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSTLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I + + +L + L + Sbjct: 61 IQNECSELFVHGRFLTSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + +RR F+D VF + F+RL + RN LL S Sbjct: 118 IHPEGFELLTDGPKQRRAFIDWGVFHTEVAFFDAWGRFKRLNKQRNALLKTASSYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L I+ R + + + E + + P +++L + + + Sbjct: 177 YWDQELARLAENIDQWRGAYVEQMKRVAEE-LCRTFLPEFEITLKYYRGWEKETP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y + L + D + T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YHEILQKNFERDQLLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D + +K Sbjct: 288 QHLTELTGKQCIYLIDDFASELDSQRRKRLADCLKATGAQVFVSSITESQVADMVEPNSK 347 Query: 364 FMRISNHQA 372 + + Sbjct: 348 MFHVEHGTI 356 >gi|268593490|ref|ZP_06127711.1| DNA replication and repair protein RecF [Providencia rettgeri DSM 1131] gi|291310912|gb|EFE51365.1| DNA replication and repair protein RecF [Providencia rettgeri DSM 1131] Length = 364 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 156/369 (42%), Gaps = 12/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L +G NG GKT+ILEAI L GR FR V Sbjct: 1 MILSRLLIRDFRNIENADLSLANGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F E D+S+ L D + ++I+ + EL K L + Sbjct: 61 IRHEQEQFILHGKLSHLDEQRNDLSLGLSKNRDGDSK-VRIDGTDGHKIAELAKLLPMQL 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR F+D F DP D +RL++ RN L + Sbjct: 120 ITPEGFTLLNGGPKYRRAFIDWGCFHNDPLFFSVWSDLKRLLKQRNAALRQ-VTRYEQIR 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A L +I+ R I ++ I + Q + P LS++ + Sbjct: 179 HWDKQLAPLSEQISQWRHNYIAGIAENIEQTCQ-QFLPEFSLSVSFQRGWDKEI------ 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y+++L + D T GPH++DL + + S G+ K+++ + LA Sbjct: 232 -DYSEQLERQFERDRALTYTASGPHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQG 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ T + V D ++ +K Sbjct: 290 EFFTHQSGQRCLYLLDDFASELDAGRRQLLAARLKATQAQVFVSAITPEQVNDMIDANSK 349 Query: 364 FMRISNHQA 372 + + + Sbjct: 350 MFSVEHGKI 358 >gi|1107710|emb|CAA61549.1| recF [Lactococcus lactis] Length = 357 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 155/370 (41%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K + + FRNY L+L F IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +V G+ A +I LE + R + N + + + L+I Sbjct: 61 ISWSQQEM-----KVSGVGEKAHATIPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RR+F+D + I + + + R ++ RN L + D ++ Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S ++ Q+AE G KI + R I+ L + ++ L + + K D Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTD----- 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++K+L + D +T +GPHR DL + + GS G+Q+ V + I LA Sbjct: 231 ----FSKELLSRQDHDIFRHQTSVGPHRDDLQFFINEINV-ADFGSQGQQRTVALSIKLA 285 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 LI TG PILLLD++ + LD ++ L T +L E Sbjct: 286 EIDLILEETGEYPILLLDDVMSELDNHRQLDLIETSLGKTQTFIT-TTTLDHLKNLPENL 344 Query: 363 KFMRISNHQA 372 ++ Sbjct: 345 SIFHVNAGTI 354 >gi|311277335|ref|YP_003939566.1| DNA replication and repair protein RecF [Enterobacter cloacae SCF1] gi|308746530|gb|ADO46282.1| DNA replication and repair protein RecF [Enterobacter cloacae SCF1] Length = 357 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 151/369 (40%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R SF R++G I + + D VR I+ V EL + + Sbjct: 61 IRHEQESF-VLHGRLQGETRETAIGLTKDKLGDSKVR---IDGTDGHKVAELALLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E ++ + + ++ P L+ + + + Sbjct: 176 PWDRELIPLAEQISAWRAEYSAGIADDMADTC-RQFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D +E +K Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 Query: 364 FMRISNHQA 372 + + Sbjct: 347 MFTVEKGKI 355 >gi|282848763|ref|ZP_06258158.1| putative recombination protein F [Veillonella parvula ATCC 17745] gi|282581549|gb|EFB86937.1| putative recombination protein F [Veillonella parvula ATCC 17745] Length = 366 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 166/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY +++ F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + E + ++IKL + + +++N+ I EL L Sbjct: 61 LMFNAEEA-GIVVKFEKKDTPQKVNIKLFRQGP---KDIRLNETKI-SQKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RRRFLD + + +++ + RL++ RN +L E ++ Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A++ I R+E + ++ LI +K L++ + S Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYT 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + +++ D T +GPHR DL + D GS G+Q+ ++ + L+ Sbjct: 236 KEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 I + G P+LLLD++ + LDE +R L + + Q F+T TD F L + + Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352 Query: 364 FMRISNHQA 372 F+ Q Sbjct: 353 FISCEGGQV 361 >gi|325288204|ref|YP_004264385.1| DNA replication and repair protein RecF [Syntrophobotulus glycolicus DSM 8271] gi|324963605|gb|ADY54384.1| DNA replication and repair protein RecF [Syntrophobotulus glycolicus DSM 8271] Length = 366 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 164/371 (44%), Gaps = 12/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L FRNY+ + F I VG NG GKTN+LE I +L G+ +R +++ Sbjct: 1 MLIHNLYFKNFRNYSEQEITFTNGINILVGSNGQGKTNVLEGIYYLLMGKSYRVNQESEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G +F+ + + LE+ ++ + ++IN + + + E + + + Sbjct: 61 IYWGQKNFY-----LRANFEAYERKYCLESYYEKGKKAIKINQLACQKLSEYVGMINVVF 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDSS 181 P I +ERRRF+D ++ + P H + + R+++ ++ LL + Sbjct: 116 FTPDDLNIIKSGPLERRRFIDLLLIQVKPAHISLLNTYIRILKQKSILLKRSLNKAAAND 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 Q+ E G ++ R EM L + + K H + L G+ +S Sbjct: 176 QLLVWNEQLLETGSRVIRNRYEMTEKLQNQCGKMFSKVFGCHENMDLQYVSLGR--KSLD 233 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + + L R + R L+GPHR D+IV+ ++ + S G+Q+ +++ + L Sbjct: 234 EALAYFPEALEKQRDAEIERRAVLVGPHRDDIIVNINGRSARY-YASQGQQRSLVLCLKL 292 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A +I+ PILLLD++ + LDE +R L +++ Q +T TD + + Sbjct: 293 AEMEIINKEKEEYPILLLDDVLSELDEGRREYLMEYISNSNKQTMITTTDLGQIEKQKDP 352 Query: 362 AKFMRISNHQA 372 A ++ + Sbjct: 353 AVYI-VKQGTI 362 >gi|152977691|ref|YP_001343320.1| recombination protein F [Actinobacillus succinogenes 130Z] gi|171472900|sp|A6VK88|RECF_ACTSZ RecName: Full=DNA replication and repair protein recF gi|150839414|gb|ABR73385.1| DNA replication and repair protein RecF [Actinobacillus succinogenes 130Z] Length = 358 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 158/367 (43%), Gaps = 14/367 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I FRN A++ L FD VG+NG GKT++LE+I +L GR F+ + + Sbjct: 1 MAISRLIIENFRNLAAVDLEFDHGFNFLVGNNGSGKTSLLESIFYLGHGRSFKSSVSTRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P +F+ R+ E + S+ L+ + + ++IN + +L L + Sbjct: 61 ITYDKP-YFTLHGRI--WEQQHEWSVGLQKQRKEGLTLVKINGEDGNKISDLAHLLPMQM 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F P RL++ RN L + Y D + Sbjct: 118 ITPEGLTLLNGGPSYRRAFLDWGLFHHRPNFHSAWSALNRLLKQRNAALQQTY-DYTDLQ 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++++L ++++ R + AL I E + P + + ++ + Sbjct: 177 VWDVELSKLAHQVSLWRTDYAEALRPEI-EQTCRLFLPELDIQVSFHQGWDKNT------ 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 230 -DYGDLLRENFARDKHIGYTVSGPQKADFRFKANGFPVEDVL-SRGQLKLLMCALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + + I L+D+ ++ LDE KR L + SQ+F+T T + + E + Sbjct: 288 EHLMVQKNRSCIFLIDDFASELDETKRGLLAERLRQSHSQVFVTAITAEQLKQMQPENHR 347 Query: 364 FMRISNH 370 ++N Sbjct: 348 TFSVNNG 354 >gi|121727885|ref|ZP_01680944.1| recF protein [Vibrio cholerae V52] gi|121629829|gb|EAX62244.1| recF protein [Vibrio cholerae V52] Length = 363 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 82/368 (22%), Positives = 156/368 (42%), Gaps = 12/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + F E + + R ++I + + +L + L + Sbjct: 61 IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S + ++A L +I+ R +N L + E + + P + L + + DQ Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 Y L + D + GP+++DL + + S G+ K+++ + +A Sbjct: 235 ---YQSILEKNFERDQQLGYSFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++ Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350 Query: 363 KFMRISNH 370 K +++ Sbjct: 351 KTFHVAHG 358 >gi|302552698|ref|ZP_07305040.1| recombination protein F [Streptomyces viridochromogenes DSM 40736] gi|302470316|gb|EFL33409.1| recombination protein F [Streptomyces viridochromogenes DSM 40736] Length = 373 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 164/379 (43%), Gaps = 20/379 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYPRVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE R+ R +R D L +R Sbjct: 61 VRMGAERAII---RAQVRQGDRQQLVELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 D S + +A G ++ R+++I + L + ++ ++L Sbjct: 177 RSMDMSTLDVWDQHLARAGAELLAQRLDLIATIQPLADKAYEQLAPGGGPVALEYKPSAP 236 Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + L E+ L + RK + TL+GPHR DL + + + S GE Sbjct: 237 GEAHTREDLYEQLTAALAESRKQEIERGVTLVGPHRDDLQLKL-GQLPAKGYASHGESWS 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 296 YALALRLASYDLLRAE-GNEPVLVLDDVFAELDTRRRERLAELVA-PGEQVLVTAAVDDD 353 Query: 354 VFDSLNETAKFMRISNHQA 372 V L + +S Sbjct: 354 VPHVL--SGARYAVSEGAV 370 >gi|149186139|ref|ZP_01864453.1| recombinational DNA repair ATPase [Erythrobacter sp. SD-21] gi|148830170|gb|EDL48607.1| recombinational DNA repair ATPase [Erythrobacter sp. SD-21] Length = 359 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 136/368 (36%), Positives = 209/368 (56%), Gaps = 13/368 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++++ FRN+ + L A+ + VG+NG GKTN+LEA+S L+PGRG RRA+ AD+ + Sbjct: 2 LDRISLTRFRNHEATELGATARFNLLVGENGAGKTNVLEALSLLAPGRGLRRANLADIVQ 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F A + EG S R ++IN L + + ++WL Sbjct: 62 HGVDEGFGVGASLLVDEGEPVRLATYSESAQPSRRRVRINGADA-SAAALGEWIALTWLT 120 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P+MD +F+G + +RRRF+DRM A+DP H + +E +R RNRLL++ +S+W + Sbjct: 121 PAMDGLFTGPAADRRRFIDRMALALDPAHAQHAARYEGALRERNRLLSDDRPPESAWLDA 180 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 IEAQM E G ++ R +++ L + I K P + +LT G E Sbjct: 181 IEAQMVEHGGRLIAGRAALVDTLMARIAHMPSK---PFARPALTYAPGG------ADSAE 231 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ LF+GR+ D ++RTL GPHR +L V + K + A STGEQK +LV I LAHA Sbjct: 232 ALSQALFEGRQRDRAAQRTLAGPHRDELEVIHASKRVPAAQSSTGEQKAMLVAITLAHAG 291 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L + G A ILLLDE++AHLD +R ALF + G+Q++MTGT+ + FDS+ + A Sbjct: 292 LAAQ--GRAGILLLDEVAAHLDPVRRAALFDQLAASGAQVWMTGTEIAPFDSIADQAAVW 349 Query: 366 RISNHQAL 373 +++ + + Sbjct: 350 KVAGGRVI 357 >gi|313893465|ref|ZP_07827035.1| DNA replication and repair protein RecF [Veillonella sp. oral taxon 158 str. F0412] gi|313441908|gb|EFR60330.1| DNA replication and repair protein RecF [Veillonella sp. oral taxon 158 str. F0412] Length = 366 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 166/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY +++ F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + E + ++IKL + + +++ND I EL L Sbjct: 61 LMFNAEEA-GIVVKFEKKDTPQKVNIKLFRQG---AKDIRLNDTKI-SQKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RRRFLD + + +++ + RL++ RN +L E ++ Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNNIPL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A++ I R+E + ++ LI +K L++ + S Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMENGSLEYT 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + +++ D T +GPHR DL + D GS G+Q+ ++ + L+ Sbjct: 236 KEGFYERIKAALPQDRHRLTTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 I + G P+LLLD++ + LDE +R L + + Q F+T TD F L + + Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRANLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352 Query: 364 FMRISNHQA 372 F+ + Sbjct: 353 FISCEGGKV 361 >gi|148656558|ref|YP_001276763.1| DNA replication and repair protein RecF [Roseiflexus sp. RS-1] gi|148568668|gb|ABQ90813.1| DNA replication and repair protein RecF [Roseiflexus sp. RS-1] Length = 398 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 89/399 (22%), Positives = 176/399 (44%), Gaps = 27/399 (6%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + + L++ +FRNY L L + + G N GKT +LEAI FL+ R R + Sbjct: 1 MVAGMHVSHLSLRDFRNYERLDLTLEPGVILLYGPNAAGKTTVLEAIYFLATTRSPRAGA 60 Query: 61 YADVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDR--------SVRCLQIN 106 ++ R + F V +G + + ++ R D +++ ++++ Sbjct: 61 DRELVRFEAQGDIGVPPFARLVCDVVRADGRVRLEVVVQRRSDEESPGSISPTIKTVRVD 120 Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 +R +D L +LR+ P+ + +G ERRR+LD + I+ R+ R + +++++ Sbjct: 121 RKTVRALD-LVGNLRVVLFTPADIALVTGAPAERRRYLDVTLSQIEGRYVRTLAHYQKVV 179 Query: 167 RGRNRLLTEG-------YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 + RN LL + + + ++A G + R+ + L++L + Sbjct: 180 QQRNSLLRAWRDGRRPLRYAGDELAFWDRELAMAGAYLLRERLRAVVDLNALAGPLYCRM 239 Query: 220 NFPHIKLSLTGFLDGKFDQSFCA---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 + L +T +++ + L R + +TLIGPHR DL++ Sbjct: 240 SGSDTPLVVTYQSSVAGIDPASDSRMIEQAFLAHLVHLRDDEIGRGQTLIGPHRDDLLIT 299 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 + + +GS G+Q+ + + L A L+ TG P+LLLD++ + LD ++R + Sbjct: 300 VGNIPMGA-YGSRGQQRSATLALKLGEAELMRARTGDTPVLLLDDVLSELDAERRAYVQD 358 Query: 337 IVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQALC 374 ++ G Q +T T F + A+ R+ + + Sbjct: 359 VIERPGQQTIVTATGTDDFSVEFLKRARRWRVEDGRLYS 397 >gi|262040464|ref|ZP_06013707.1| DNA replication and repair protein RecF [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042217|gb|EEW43245.1| DNA replication and repair protein RecF [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 357 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIEHADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ V EL + + Sbjct: 61 IRHEQDAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E A+ + + Q + P L+ + + + Sbjct: 176 PWDLELIPLAEQISRWRAEYSAAVVEDMADTCQ-QFLPEFTLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D M T GPH++D + D A S G+ K+++ + LA Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D ++ +K Sbjct: 287 EFLTRVSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEKGKI 355 >gi|326407512|gb|ADZ64583.1| DNA replication and repair protein RecF [Lactococcus lactis subsp. lactis CV56] Length = 358 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 155/370 (41%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K + + FRNY L+L F IF+G N GKTNILEAI FL+ R R + ++ Sbjct: 1 MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +V G+ A ++ LE + R + N + + + L+I Sbjct: 61 ISWSQQEM-----KVSGVVEKAHATVPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G RR+F+D + I + + + R ++ RN L + D ++ Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S ++ Q+AE G KI + R I+ L + ++ L + + K D Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTD----- 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++K+L + D +T +GPHR DL + + GS G+Q+ V + I LA Sbjct: 231 ----FSKELLIRQDHDIFRHQTSVGPHRDDLQFFINEINV-ADFGSQGQQRTVALSIKLA 285 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 LI TG PILLLD++ + LD ++ L T +L E Sbjct: 286 EIDLIFEETGEYPILLLDDVMSELDNHRQLDLIETSLGKTQTFIT-TTTLDHLKNLPENL 344 Query: 363 KFMRISNHQA 372 ++ Sbjct: 345 SIFHVNAGTI 354 >gi|254387093|ref|ZP_05002367.1| recombination protein F [Streptomyces sp. Mg1] gi|194345912|gb|EDX26878.1| recombination protein F [Streptomyces sp. Mg1] Length = 378 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 98/383 (25%), Positives = 164/383 (42%), Gaps = 23/383 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + D T FVG NG GKTN++EAI +L+ R +S A + Sbjct: 1 MHVSHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAIGYLAVLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A +G ++LE R+ R +R D L +R Sbjct: 61 VRMGADRAVIRAAVTQGERQQL---VELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 P + G ERRRFLD +V A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233 D S + +A G ++ R+++I + L + ++ + L+ Sbjct: 177 RSMDLSTLDVWDQHLARAGAELLAQRLDLIATMLPLADKAYEQLAPGGGPLGLAYKSSAG 236 Query: 234 GKFDQSFCALKEEYAK----KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 D +E + L D RK + TL+GPHR D+++ + + S Sbjct: 237 EAVDSGEARTREALYEVLLGALSDVRKQEIERGVTLVGPHRDDVLLRLGELPAK-GYASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + LA L+ + G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 296 GESWSYALALRLASYELLRSE-GAEPVLILDDVFAELDARRRERLAELVA-PGEQVLVTA 353 Query: 350 TDKSVFDSLNETAKFMRISNHQA 372 + A+ +S + Sbjct: 354 AVDDDVPGVLVGAR-FGVSGGEV 375 >gi|1074046|pir||I64106 recF protein - Haemophilus influenzae (strain Rd KW20) Length = 375 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 159/368 (43%), Gaps = 15/368 (4%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A Sbjct: 16 NMAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNR 75 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + P F+ F +++ + I ++ + + ++IN + +L L + Sbjct: 76 IISYDEP-HFTLFGQIQESQHQWSIGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQ 131 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 132 LITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-I 190 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++A+L +++ R E ALS I + Q P ++++++ + + Sbjct: 191 KIWDVELAKLAHQVSEWRAEYAEALSPEIEQTCQ-LFLPELEINVSFHQGWEKN------ 243 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 244 -ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQ 301 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E Sbjct: 302 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 361 Query: 363 KFMRISNH 370 K + N Sbjct: 362 KMFSVHNG 369 >gi|149202935|ref|ZP_01879906.1| recombination protein F [Roseovarius sp. TM1035] gi|149143481|gb|EDM31517.1| recombination protein F [Roseovarius sp. TM1035] Length = 369 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 11/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ S RL+ DA+ G NG GKTN++EAIS LSPGRG RRA+ D+ Sbjct: 4 LYLSELTLSHFRSHKSGRLLLDARPVAIHGPNGAGKTNLIEAISLLSPGRGLRRAAAQDM 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A + + + ++ E + R ++I+ + L + R+ W Sbjct: 64 ARRPEALGWKITAILNSLHQVHEVETFAE---GTAARQVRIDSKTATQLA-LGRIARLLW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR++ + RRRFLDRM + P H + +++ MR RNRLL + D+ W Sbjct: 120 LVPAMDRLWIEGADGRRRFLDRMTMSFIPAHAEVTLAYDKAMRERNRLLKDQVRDAQWYL 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E QMA+ G +I+ R + + + + + FP +L LT D + Sbjct: 180 ALERQMADAGAEIHANRQHALALI--MGAQMQAETAFPTAELELTQTEGEMPDSA----- 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ + L + R D M+ RTLIGPHR+DL Y K + A STGEQK +LV + LA+A Sbjct: 233 DDLRQALAESRFRDLMAGRTLIGPHRADLYGVYAAKGVPAADCSTGEQKALLVSLILANA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F L A+ Sbjct: 293 RALARDFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFSELGNRAQH 352 Query: 365 MRISNHQALC 374 + +++ + Sbjct: 353 IHVTDTAGIS 362 >gi|320531088|ref|ZP_08032117.1| putative recombination protein F [Selenomonas artemidis F0399] gi|320136670|gb|EFW28623.1| putative recombination protein F [Selenomonas artemidis F0399] Length = 373 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 96/376 (25%), Positives = 165/376 (43%), Gaps = 17/376 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +RNY L L FD IF+G N GKTNI+EA+ + S GR R S A++ Sbjct: 1 MRITRLELHSYRNYEILDLRFDPGVQIFLGANAQGKTNIIEALYYASFGRSHRTTSDAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+ + R++ D+ +L +R R + EL L + Sbjct: 61 IRMEESA-----GRIDLSFLRHDVPGELSFTFERGHRRRILRAGEPLRQRELVGLLPMVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---S 181 P + G RRR+LD + P + ++ + ++R R +L + Sbjct: 116 FSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAILKDIRERLVPVD 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-------LDG 234 + Q+A +I R+ L + + VQ +L+++ L G Sbjct: 176 ALEPWDVQLARSAARIVTRRIAAAERLGA-LSGRVQAVLAAGEELTISYEIAHVPDDLPG 234 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + D L+ Y K L + R D T +GPH DL++ ++ ++GS G+Q+ Sbjct: 235 EKDGMADRLEVWYNKALSEFRFRDIARGSTGVGPHLDDLVLSVGGMSLR-SYGSQGQQRT 293 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + LA + ++ G APILLLD++ + LD D+R AL + Q F+T TD + Sbjct: 294 GALALKLAELFYLRDSVGEAPILLLDDVMSELDADRRAALLSFIRSEHIQTFITATDAAY 353 Query: 355 FDSLNETAKFMRISNH 370 F + A + +++ Sbjct: 354 FPAEEMGATYRYVTHG 369 >gi|282860299|ref|ZP_06269368.1| DNA replication and repair protein RecF [Prevotella bivia JCVIHMP010] gi|282586896|gb|EFB92132.1| DNA replication and repair protein RecF [Prevotella bivia JCVIHMP010] Length = 368 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 164/375 (43%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L + F+G NG GKTN+L+AI +LS + ++V Sbjct: 1 MRLDKLSIINYKNIQAATLELSPKLNCFIGHNGEGKTNLLDAIYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F G A+ R + + + N + + + + + + Sbjct: 61 MCH-TADFLVLEGDYTTEAGDAEQVYCGMKRGSK--KHFKRNKKEYKRLSQHIGLVPLIF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P+ + +G S ERR +D ++ D + + + + ++ RN LL E D + Sbjct: 118 ISPADSSLITGGSEERRHLMDVVISQYDALYMESLSRYNKALQQRNSLLKQEEEPDETLL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QMAE G K+ R + L + Q + H ++SLT G+ Sbjct: 178 ELLEGQMAEYGEKVFKKRTAFVEDLQPVFQRIYQAISNEHEQVSLTYVSHGQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + R D + +L G H+ DL++ + +I GS G+ K ++ + LA Sbjct: 230 RGDLLNVIQRDRAKDRIMGYSLHGIHKDDLVMQLGNYSIKRE-GSQGQNKTYVLALKLAQ 288 Query: 304 ARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSLNE- 360 + TT P+LLLD+I LD ++ + R+V +D QIF+T T++ D + + Sbjct: 289 FDFLRRTTANNTPLLLLDDIFDKLDANRVEQIIRLVSSDDFGQIFITDTNRDHLDKILQG 348 Query: 361 ---TAKFMRISNHQA 372 K + N + Sbjct: 349 GAFNYKLFSVENGEV 363 >gi|304319869|ref|YP_003853512.1| recombination protein F [Parvularcula bermudensis HTCC2503] gi|303298772|gb|ADM08371.1| recombination protein F [Parvularcula bermudensis HTCC2503] Length = 375 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 145/365 (39%), Positives = 205/365 (56%), Gaps = 5/365 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +S FR+Y S F+ + T F G NG GKTNILEA+S + PGRG RRA+ D+T Sbjct: 7 RVTRLALSSFRSYRSAEWRFEKRQTAFYGPNGAGKTNILEALSLMGPGRGLRRAALGDLT 66 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R GS + + EG ++++ E + R +Q++ +R L +R WL Sbjct: 67 RQGSDGGWGIGVDLGTGEGRRRLALRAEGVPLK--RHVQVDGEPVRSTGTLLDSVRFQWL 124 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P+ DR+F+ ERRRFLDRMV A P H R + FE +R R L G+ + Sbjct: 125 TPAQDRLFTDSPGERRRFLDRMVLARCPSHGRDTLTFENALRQRQAALEAGWP-PAILEP 183 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCALK 244 +EAQMAE G+ I+ AR + + AL E VQ+ FP LSL+G F D + A + Sbjct: 184 LEAQMAEAGIAIDEARRQTLAALQVN-YERVQETAFPRAGLSLSGPFEDIAGIPTLAARR 242 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E YA L GR+ D + RTL+GPHRSDL V + K STGEQK +L+G+ LAHA Sbjct: 243 ESYADLLERGRRRDREAGRTLLGPHRSDLEVVHLGKDQPARLCSTGEQKALLIGLVLAHA 302 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 T +LLLDE++AHLDED+R AL ++ + +FMTGTD+++FD+ + Sbjct: 303 TASLAATQAPLVLLLDEVAAHLDEDRRAALAAMLDQLAICVFMTGTDRALFDAWGDRVDR 362 Query: 365 MRISN 369 + + Sbjct: 363 LHVDG 367 >gi|329767181|ref|ZP_08258708.1| hypothetical protein HMPREF0428_00405 [Gemella haemolysans M341] gi|328836848|gb|EGF86495.1| hypothetical protein HMPREF0428_00405 [Gemella haemolysans M341] Length = 378 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 81/381 (21%), Positives = 163/381 (42%), Gaps = 20/381 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK L + FRNY S+ + + VG+N GKTNI+E+I L+ GR +R S ++ Sbjct: 1 MRIKSLKLLYFRNYLSMNIDVHPSLNVLVGNNANGKTNIIESIFCLALGRSYRTKSDSEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + D ++ + + +I V + + L + Sbjct: 61 IMFGETATAMSCVV-----NKNDKNLDIMLGISNKGKSAKIAGVKKTKLTDFVGELNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P ++ G RR F++R + + + + ++ L++ RN L + + Sbjct: 116 FSPEDLQLVKGSPSLRREFINREFYQFSRIYHKYYLMYQHLLKQRNSYLKDMRKNPKDEM 175 Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 ++ ++ +Q+A++ + I RV + +S L + + + L + Sbjct: 176 SLAYLETLTSQLAKVAIYITKERVSFVQDISELTYKNMMNISNGQESLKIRYKSSVLESL 235 Query: 239 SFCAL------KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + + +E K + D M T IGPH+ DL D + + S G+Q Sbjct: 236 NIADITDEGFTEENLTKVMMKKFFDDIMRGSTKIGPHQDDLEFYINDLDAKM-YASQGQQ 294 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD- 351 + +++ + LA + + TG P+LLLD++ + LD++++ L + + Q F+T Sbjct: 295 RSIVLSLKLAEINYLKSKTGTYPVLLLDDVLSELDKNRQLKLLDAINE-NVQTFITTPSI 353 Query: 352 KSVFDSLNETAKFMRISNHQA 372 + + L + AK +I N Sbjct: 354 SDIKEDLLKKAKVFKIENGNI 374 >gi|78173107|gb|ABB29470.1| RecF [Streptomyces argillaceus] Length = 373 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 99/380 (26%), Positives = 167/380 (43%), Gaps = 22/380 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ R + +G ++LE ++ R +R D L +R Sbjct: 61 VRMGAD---RAVVRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR D+ER++R RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLRQRNTLLKSAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233 D S + +A +G ++ AR++++ A+ L + ++ + L Sbjct: 177 RTMDLSTLDVWDQHLARVGAELLAARLDLVAAVQPLADKAYEQLAPGGGPVALEYKASAP 236 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G+ + L E+ L + RK + TL GPHR D+++ + + S GE Sbjct: 237 GE-AHAREDLYEQLMGALAEVRKQEIERGVTLAGPHRDDVLLKL-GQLPAKGYASHGESW 294 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDK 352 + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 295 SYALALRLASYDLLRAE-GNEPVLILDDVFAELDSRRRERLAELVA-PGEQVLVTAAVDD 352 Query: 353 SVFDSLNETAKFMRISNHQA 372 V L ++ Sbjct: 353 DVPHVL--AGARYAVAQGTV 370 >gi|307331910|ref|ZP_07611006.1| DNA replication and repair protein RecF [Streptomyces violaceusniger Tu 4113] gi|306882428|gb|EFN13518.1| DNA replication and repair protein RecF [Streptomyces violaceusniger Tu 4113] Length = 380 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 102/386 (26%), Positives = 168/386 (43%), Gaps = 27/386 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + D T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYTRAEVALDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A V+G I+LE ++ R +R D L LR Sbjct: 61 VRMGAERAVVRAAVVQGDRQQL---IELELNPGKANRARINRSSQVRPRDVL-GILRSVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARVPRMAGVRSDYDRVLKQRNTLLKTAALARRHGS 176 Query: 175 -EGYFDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLT 229 G D++ + +A G ++ R+++I L L + ++ + L Sbjct: 177 RSGGGDAALSTLDVWDQHLARAGAELLAQRLDLIAVLQPLADKAYEQLAPGGGPVLLEYR 236 Query: 230 GFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 G + S L E L + RK + TL+GPHR DL++ + + Sbjct: 237 GSAGEGLTEAGSREELCELLMAALTEARKQEIERGVTLVGPHRDDLVLKL-GRLPAKGYA 295 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + LA L+ G P+L+LD++ A LDE +R L +V G Q+ + Sbjct: 296 SHGESWSYALALRLASYDLLRTEAGE-PVLVLDDVFAELDERRRERLAELVA-PGEQVLV 353 Query: 348 T-GTDKSVFDSLNETAKFMRISNHQA 372 T + V L+ T +S + Sbjct: 354 TAAVEDDVPQVLSGT--RYAVSEGEV 377 >gi|304315541|ref|YP_003850686.1| DNA replication and repair protein RecF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777043|gb|ADL67602.1| DNA replication and repair protein RecF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 362 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 173/370 (46%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L I F+N ++ F A + G N GK+N+LE I LS G+ FR + D+ Sbjct: 1 MYLKELTIDNFKNLRQQKVTFSAGTNVIYGTNAQGKSNLLECIRILSIGKSFRNSKNKDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDD-RSVRCLQINDVVIRVVDELNKHLRIS 123 S ++ ++G+ + + I +ET R ++N+ I+ + EL + + Sbjct: 61 VNFNSDYYY-----IKGIFDIDNEEITVETGYKLNQNRFFKVNNNKIKSISELIGVILTT 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181 P I G RRR++D + I + +I + +++ RN++L F S Sbjct: 116 IFSPDDLNIVKGSPFIRRRYMDASISMIKRNYLYDIIQYNKVLANRNKVLKNIKFKSENL 175 Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 ++ Q++ G KI + R + IN L+ ++ + + + +++ + K D Sbjct: 176 KLLDIMDEQLSIYGSKIMMYRKQYINNLNLIVKKILHDISDEEVEICYWSNVMDKID-DI 234 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +KE + KL R++D T GPHR D+ + Y + + + S G+Q+ + + + Sbjct: 235 KYIKESLSNKLKLNREIDIKYGDTRYGPHRDDIKI-YVNGHDSRIYASQGQQRTIALCLK 293 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA +I + PILLLD++ + LD ++R + VT G Q F+T T+K Sbjct: 294 LAEHEMIKSENHENPILLLDDVMSELDLNRRRYILNKVT--GCQTFITHTEKDDIKG--- 348 Query: 361 TAKFMRISNH 370 K+ IS+ Sbjct: 349 -DKYFLISDG 357 >gi|254511198|ref|ZP_05123265.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium KLH11] gi|221534909|gb|EEE37897.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium KLH11] Length = 365 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 11/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ RL D + G NG GKTNILEA+S SPGRG RRAS A++ Sbjct: 3 LALTELTVSHFRSHKLARLFLDGRPVALHGPNGAGKTNILEAVSLFSPGRGIRRASAAEM 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + + ++ E R VR D +L + R+ W Sbjct: 63 TRRPEALGWKLSGVLRAQGQSFEVETWSEGGAARQVRV----DEKAASQIDLGRLTRVVW 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+PSMDR++ + RRRFLDR+ + +P H + + +E+ MR RNRLL E D+ W + Sbjct: 119 LIPSMDRLWIEGAEGRRRFLDRIALSFEPSHAQASLTYEKAMRERNRLLKEQVRDAHWYA 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E QMAE+G +I+ R+ + L + + FP L L + + + Sbjct: 179 ALEGQMAEMGHRIHSTRLTALEHLR--AAQDQAETAFPSADLEL-----VQTEGAMPETA 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ + L + R D + RTL+GPHRSDL + K + STGEQK +LV + L++A Sbjct: 232 EDLHEALNESRFRDLAAGRTLVGPHRSDLYGVFAAKGVPAKDCSTGEQKALLVSLILSNA 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G PI+LLDE++AHLD +R AL+ + +G+Q +MTGT +F L + A+ Sbjct: 292 RALAAMVGAPPIVLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFAELGDRAQT 351 Query: 365 MRISNH 370 + +S+ Sbjct: 352 LIVSDG 357 >gi|89069839|ref|ZP_01157174.1| recombination protein F [Oceanicola granulosus HTCC2516] gi|89044640|gb|EAR50756.1| recombination protein F [Oceanicola granulosus HTCC2516] Length = 366 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 138/372 (37%), Positives = 206/372 (55%), Gaps = 11/372 (2%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I L +S FR++ + DA+ G NG GKTN+LEA+S LSPGRG RRA A Sbjct: 2 SRLAITRLTLSHFRSHKRAAVEVDARPVAIYGANGAGKTNLLEAVSILSPGRGLRRAGAA 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++TR + A V + +I E + R ++I+ V L + +R+ Sbjct: 62 EMTRRPETVGWKVTAEVAAPDRPHEIETWSEAS---AARQVRIDGKAAAQVA-LGRVVRV 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL+PSMDR++ + RRRFLDR V + D H + +E+ MR RNRLL + D SW Sbjct: 118 LWLIPSMDRLWIEGADGRRRFLDRAVLSFDADHAAETLAYEKAMRERNRLLKDEVRDPSW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++EAQMA G +I+ RVE++ AL+ + + FP L+L +G+ A Sbjct: 178 YGALEAQMARAGARIHAGRVEVLAALAE--AQEGAETAFPVATLALEQS-EGELPGDEAA 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L+E +A GR D + RTL GPHR+DL Y K + STGEQK +L+ + LA Sbjct: 235 LRETFA----AGRGRDMAAGRTLAGPHRTDLAATYAAKDVPARDCSTGEQKALLISLILA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +AR ++ TG P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F L + A Sbjct: 291 NARALAARTGMPPLLLLDEVAAHLDAARRAALYEEIVALGAQAWMTGTGPELFAELGDRA 350 Query: 363 KFMRISNHQALC 374 + + + + Sbjct: 351 QRLEVRETDGVS 362 >gi|312897425|ref|ZP_07756849.1| putative recombination protein F [Megasphaera micronuciformis F0359] gi|310621486|gb|EFQ05022.1| putative recombination protein F [Megasphaera micronuciformis F0359] Length = 370 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 162/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + RNY + F A + G+NG GKTN+LEA+ G+ +R + D+ Sbjct: 1 MNISRIRLLNIRNYEEADISFPATVIVLYGNNGQGKTNLLEALYTGCIGKSYRGVTDVDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + + +I I + + + +ND +R EL L+ Sbjct: 61 LRKSATNGSVIIDFIRNK-TEQNIKIVFSLHEK---KRVSVNDTKVRT-RELFGILQEVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RRRFLD + +P + + ++ + + + RN LL ++ Sbjct: 116 FSPEDLQLIKGNPALRRRFLDMEISQTNPSYYKMLLQYNKAVSQRNILLKRMKYEKDISL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A L I R E + +S ++ E + + LT K + Sbjct: 176 HEWDLQLARLAAYIVNKRKESLEKISVVVKEIYRNLTSEKEIVKLTYIQPYKGS-TVEDT 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ Y + L R+ D + T IGPHR D +V+ D GS G+Q+ ++ + +A Sbjct: 235 EDVYYELLRKNREKDIYRQSTSIGPHRDDFVVE-NDLGELKKFGSQGQQRTAVLALKMAE 293 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 I G PILLLD++ + LDE++RNAL V Q F+T TD S F E + Sbjct: 294 LEFIKKENGEYPILLLDDVMSELDEERRNALLSFVQGK-VQTFITTTDDSFFRKEKEYS- 351 Query: 364 FMRISNHQA 372 F+ + + Sbjct: 352 FLYVEKGKV 360 >gi|148980122|ref|ZP_01815902.1| recombination protein F [Vibrionales bacterium SWAT-3] gi|145961423|gb|EDK26729.1| recombination protein F [Vibrionales bacterium SWAT-3] Length = 359 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 74/369 (20%), Positives = 153/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN + + + +G NG GKT++LEA+ L GR F+ + + Sbjct: 1 MPLSRLIVKQFRNIEACDIQPSSGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F R + ++ I + + D + ++I+ + + +L + L + Sbjct: 61 IQNECSELF-VHGRFMTSDQF-ELPIGINKQRDGTT-EVKISGQTGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF + +RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L I+ R +N L + E P ++ + + D Sbjct: 177 YWDQELARLAESISEWRATYVNQLKEVAEEICA-TFLPEFEIKINYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + +Q+F++ T + D +E ++ Sbjct: 288 QHLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATEAQVFVSSITADQIADMHDENSR 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 MFHVEHGKI 356 >gi|284007065|emb|CBA72340.1| dna replication and repair protein [Arsenophonus nasoniae] Length = 362 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 94/369 (25%), Positives = 161/369 (43%), Gaps = 12/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L +G NG GKT+ILEAI L GR FR A V Sbjct: 1 MMLSRLLIRDFRNIESADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQAARV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F V ++++ L +D ++IN + EL K L + Sbjct: 61 IRHEQDNFILHGRLVPLEPESRELTLGLS-KDRNGDSKVRINGSDGHKIAELAKLLPMQL 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P+ D +RL++ RN L + + S Sbjct: 120 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPQFFAAWSDLKRLLKQRNAALRQATRYNE-LS 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L KI+ R I ++ I E K+ P LS++ + Sbjct: 179 HWDYELIPLAHKISEWRANYIAGIAKDI-ENTCKQFLPEFSLSISYQRGWDKET------ 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y+ L + D M T +GPH++DL + A+ S G+ K+++ + LA Sbjct: 232 -DYSDILVRQFERDRMLTYTALGPHKADLRLRVGGIAVEDIL-SRGQLKLLMCALKLAQG 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + +G + LLD+ ++ LD+D+R L + +Q+F++ T V D L+ ++ Sbjct: 290 EYFTRQSGQRCLYLLDDFASELDKDRRQLLAERLKATQAQVFVSAITIAQVKDMLDGNSR 349 Query: 364 FMRISNHQA 372 + + + Sbjct: 350 MFCVKHGKI 358 >gi|332288917|ref|YP_004419769.1| recombination protein F [Gallibacterium anatis UMN179] gi|330431813|gb|AEC16872.1| recombination protein F [Gallibacterium anatis UMN179] Length = 359 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 83/373 (22%), Positives = 162/373 (43%), Gaps = 17/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI FRN ++ L ++ +G NG GKT++LEAI FL GR F+ + + Sbjct: 1 MALSQLNIQHFRNLKAVNLALNSGFNFLIGHNGSGKTSLLEAIYFLGHGRSFKSSVVNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + FA+VE ++ + ++ + + ++R IN + +L L + Sbjct: 61 IQYEQAEF-TLFAKVEELQQSWALGLQKTRQGENTIR---INGKDGHKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F ++P+ RL++ RN L + D + Sbjct: 117 ITPEGLTLINGGPSYRRAFLDWGLFHLEPQFHHHWSAMNRLLKQRNAAL-QQVDDYALLK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+ +L +I+ R + L + I + + P +++ + + + Sbjct: 176 IWDQQLCQLAQQISEWRQRYADELKTEITQTC-RLFLPEVEIEVHFYQGWNKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + + D T+ GP R+D S G+ K+++ + LA Sbjct: 229 -DYADILIENFQRDKSVGYTMSGPQRADFKFRANGMPAEDIL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS--LNETA 362 + I L+D+ ++ LD +KR L + + + SQ+ +T E + Sbjct: 287 EHLMRQQQRHCIFLIDDFASELDPNKRALLAQRLKESQSQVIITAITPEQLQQPYWQEGS 346 Query: 363 KFMRISNHQALCI 375 K ++ N + L + Sbjct: 347 K-FQLQNGELLPL 358 >gi|24753765|gb|AAN64013.1|AF434658_10 recombination protein RecF [Leptospira interrogans] Length = 365 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 170/375 (45%), Gaps = 15/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L I FRN+ L L FD++ FVGDNG GKTN+LEAI LS + FR + +++ Sbjct: 1 MFLKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS ++F +++ + + I ++ R L+ N I+ +L Sbjct: 61 IRWGSENYF-LRGKIKDNLKESVLEIGFTSKPSVK-RKLKFNQEEIKKRTDLIGKFITVL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P +I G ERR+F+D + + DP + ++++ ++++ RN LL G D S S Sbjct: 119 LTPMDLKIIEGGPAERRKFIDAFISSFDPFYLESLLEYNKILKHRNALLKSGNPDISHLS 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ E G+ I R E++ L+S + K + L L + K + Sbjct: 179 IWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSGGKDGLELIYKPNVKD-------Q 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +E+ +KL D T +G HR DL + D+ GS G+++ ++ + A Sbjct: 232 DEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQRDITEFGSQGQKRSTVIALKAATF 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS----LNE 360 N P+LL+D++ LD +R +V G Q F T TD L + Sbjct: 291 NYYKNILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTDLEGIQDYVGKLKD 349 Query: 361 TAKFMRISNHQALCI 375 + I + I Sbjct: 350 QKQIFLIRQGKVEPI 364 >gi|47879|emb|CAA44366.1| recF protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 355 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 155/368 (42%), Gaps = 15/368 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG N GKT++LEAI L GR FR V Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGPNASGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++ E I + + + D VR I+ + ++ + + Sbjct: 61 IRHEQEAF-VLHGRLQSEERETSIGLTKDKQGDSKVR---IDGTDGHKIADVAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F + + +RL++ RN L + Sbjct: 117 ITPEGFTLLTGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALAQ-VSRYEQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E +A++ + + Q + P L+ + + + Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D M T GPH++D + CD A S G+ K+++ + LA Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRM-LCDGAPVEDTLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + ++ +G + L+D ++ LD+ +R L + SQ+F++ + V D +E +K Sbjct: 287 QFLTRESGR-CLYLIDAFASELDDGRRGLLASRLKATQSQVFVSELAEHVIDMSDENSKM 345 Query: 365 MRISNHQA 372 + + Sbjct: 346 FTVEKGKI 353 >gi|304437929|ref|ZP_07397875.1| recombination protein F [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369069|gb|EFM22748.1| recombination protein F [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 372 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 96/362 (26%), Positives = 159/362 (43%), Gaps = 16/362 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +R+Y +L L FD IF+G N GKTNI+EA+ + + GR R +S A++ Sbjct: 1 MQITELTLRSYRSYETLHLAFDPGVQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A + D+ +L R R +L L + Sbjct: 61 IRAGADG-----AHIGLSFRRHDVPGELSFTFARGARRRITYAGESLRQRDLVGLLPMVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181 P + G RRR+LD + P + ++ + R+++ RN +L + Sbjct: 116 FSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTRILKQRNAVLKDIRERLAAPD 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 +AQ+A I R+ + L + + VQ +L+L + G + F Sbjct: 176 DLPPWDAQLARSAAYIVTRRIAAVAQLGA-LSARVQAVLAAGEELTLAYEIAGAGAEDFA 234 Query: 242 A------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 L Y K L +GR D T +GPH DL++ ++ ++GS G+Q+ Sbjct: 235 EDDMTESLHLWYNKMLCEGRARDIARAATGVGPHLDDLVLRVGGMSLR-SYGSQGQQRTG 293 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + + LA + G APILLLD++ + LD D+R AL + Q F+T TD + F Sbjct: 294 ALALKLAELFYLQENIGEAPILLLDDVMSELDADRRRALLDFIRHEHIQTFITATDAAYF 353 Query: 356 DS 357 + Sbjct: 354 PA 355 >gi|254462172|ref|ZP_05075588.1| DNA replication and repair protein RecF [Rhodobacterales bacterium HTCC2083] gi|206678761|gb|EDZ43248.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium HTCC2083] Length = 368 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 193/370 (52%), Gaps = 11/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L +S FR++ R+ G NG GKTNILEA+S SPGRG RRAS D+ Sbjct: 2 LAITELTLSHFRSHKLARISCGPLPVAIYGPNGAGKTNILEAVSLFSPGRGMRRASAEDM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + ++ + +I + E + S R + N + + L + R+ W Sbjct: 62 TRRPEALGWKVTGLLQTQDQTHEIEMWSE---NGSARSTKANSKPV-PQNRLAELSRVLW 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MDR++ + RRRFLDRM + P H + +E+ MR RN+LL E D W Sbjct: 118 LIPAMDRLWIEGAEGRRRFLDRMALSFFPNHAEASLTYEKTMRERNKLLKENVRDPMWYG 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +E ++AE G I+ RV + LS+ + K FP L LT D S Sbjct: 178 VLETRLAETGAVIHENRVRTLTFLSN--AQAQAKTPFPTADLELTHAEDAMPVDSV---- 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + R D + RTL+GPHR+DL + K + STGEQK +L+ + LA+A Sbjct: 232 -DLKDAFEASRFRDLAAGRTLVGPHRADLYGVFTAKGVPAKDCSTGEQKALLISLILANA 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G PILLLDE++AHLD +R AL+ ++ +G+Q +MTGT +FDSL+ + Sbjct: 291 RALAGQIGAPPILLLDEVAAHLDATRRAALYAEISALGAQAWMTGTGAELFDSLSSQSVH 350 Query: 365 MRISNHQALC 374 + ++ + + Sbjct: 351 LEVTENDGIS 360 >gi|269797073|ref|YP_003310973.1| DNA replication and repair protein RecF [Veillonella parvula DSM 2008] gi|269093702|gb|ACZ23693.1| DNA replication and repair protein RecF [Veillonella parvula DSM 2008] Length = 366 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 165/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY +++ F+ + + G NG GKTNILE+I + G+ R +D+ Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + E + ++IKL + + +++ND I EL L Sbjct: 61 LMFNAEEA-GIVVKFEKKDTPQKVNIKLFRQG---AKDIRLNDTKI-SQKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RRRFLD + + +++ + RL++ RN +L E ++ Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A++ I R+E + ++ LI +K L++ + S Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYT 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + +++ D T +GPHR DL + D GS G+Q+ ++ + L+ Sbjct: 236 KEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 I + G P+LLLD++ + LDE +R L + + Q F+T TD F L + + Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRVNLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352 Query: 364 FMRISNHQA 372 F+ Sbjct: 353 FISCEGGNV 361 >gi|167755162|ref|ZP_02427289.1| hypothetical protein CLORAM_00667 [Clostridium ramosum DSM 1402] gi|237733415|ref|ZP_04563896.1| recombination protein F [Mollicutes bacterium D7] gi|167705212|gb|EDS19791.1| hypothetical protein CLORAM_00667 [Clostridium ramosum DSM 1402] gi|229383450|gb|EEO33541.1| recombination protein F [Coprobacillus sp. D7] Length = 365 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 94/375 (25%), Positives = 162/375 (43%), Gaps = 21/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + FRNY + FD I +G NG GKTN++EAI LS G+ F+ + Sbjct: 1 MKVNSLCLDNFRNYNHFFIEFDRDINILIGSNGQGKTNLIEAIYLLSVGKSFKTHINKQM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FA+V+G + LE + +I+D I + E L + Sbjct: 61 IMFDCE-----FAKVKGEVTSNNKLRSLEMILGSDFKRAKIDDQDIYKISEYVGLLNVVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 VP + G RRRF+D + I P + + + L++ RN+ L + Sbjct: 116 FVPDDLYLIKGSPNNRRRFIDLELSKISPIYVFNLSKYNNLLKERNKYLKILNQKNRDGD 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFLDGKFD 237 + ++ QMA L V++ R++ I L+ I + K + I L + FL + Sbjct: 176 EYLEVLDEQMARLQVELIKKRIDFIKNLNQKVTSIYNLIAKNDNEKISLRYSCFLKQEL- 234 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 E + D ++ +G H+ DL + + + S G+Q+ +++ Sbjct: 235 -----TYENILALYKKNHQRDIRYMQSHLGIHKDDLKI-FMNGNAADLFASQGQQRTIVL 288 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + +A LI + G P+LLLD++ + LDE ++N L I+ Q F+T T + Sbjct: 289 SLKIALIELIKDEIGEYPVLLLDDVLSELDEARKNMLLDILNQK-IQTFITTTSIDGINH 347 Query: 358 -LNETAKFMRISNHQ 371 + E AK + I + Sbjct: 348 QIVEKAKKIYIKGGK 362 >gi|150005151|ref|YP_001299895.1| DNA replication and repair protein RecF [Bacteroides vulgatus ATCC 8482] gi|254883286|ref|ZP_05255996.1| DNA replication and repair protein recF [Bacteroides sp. 4_3_47FAA] gi|294778962|ref|ZP_06744378.1| DNA replication and repair protein RecF [Bacteroides vulgatus PC510] gi|319642660|ref|ZP_07997306.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_40A] gi|166220701|sp|A6L3K9|RECF_BACV8 RecName: Full=DNA replication and repair protein recF gi|149933575|gb|ABR40273.1| DNA replication and repair protein RecF [Bacteroides vulgatus ATCC 8482] gi|254836079|gb|EET16388.1| DNA replication and repair protein recF [Bacteroides sp. 4_3_47FAA] gi|294447271|gb|EFG15855.1| DNA replication and repair protein RecF [Bacteroides vulgatus PC510] gi|317385748|gb|EFV66681.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_40A] Length = 371 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 21/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N L F + F+G NG+GKTN+L+A+ +LS + + Sbjct: 1 MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G ++ L+ R + + N + + + + Sbjct: 61 IRH-EGEFFVIQGFYETDQGEPEEVYCGLKRRQKKQFKR---NKKEYNRLSDHIGFIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S RRRF+D ++ D + +I + + + RN LL E FD Sbjct: 117 MVSPADAELIAGGSDGRRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEFDEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA G + R E I + + K++L A Sbjct: 177 MLVWEEMMASAGEVVFKKRSEFIAEFIPTFQSFYSYISQDKEKVNLAY--------ESHA 228 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + + R+ D + +L G H+ DLI+ D I GS G+ K L+ + LA Sbjct: 229 MSGGLLDIIKESRRRDRVMGYSLKGVHKDDLIMQLGDFPIKRE-GSQGQNKTYLIALKLA 287 Query: 303 HARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360 + T G P+LLLD+I LD + + ++V D QIF+T T++ D + + Sbjct: 288 QFDFLKKTGGNTTPLLLLDDIFDKLDAFRVEQIVKLVAGDRFGQIFITDTNRDHLDKILK 347 Query: 361 T----AKFMRISNHQA 372 K + + + Sbjct: 348 KIEREYKVFAVEDGEV 363 >gi|24212703|ref|NP_710184.1| recombination protein RecF [Leptospira interrogans serovar Lai str. 56601] gi|51316470|sp|Q8FA32|RECF_LEPIN RecName: Full=DNA replication and repair protein recF gi|24193334|gb|AAN47202.1| recombination protein RecF [Leptospira interrogans serovar Lai str. 56601] Length = 365 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 170/375 (45%), Gaps = 15/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L I FRN+ L L FD++ FVGDNG GKTN+LEAI LS + FR + +++ Sbjct: 1 MFLKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS ++F +++ + + I ++ R L+ N I+ +L Sbjct: 61 IRWGSENYF-LRGKIKDNLKESVLEIGFTSKPSVK-RKLKFNQEEIKKRTDLIGKFITVL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P +I G ERR+F+D + + DP + ++++ ++++ RN LL G D S S Sbjct: 119 LTPMDLKIIEGGPAERRKFIDAFISSFDPFYLESLLEYNKILKHRNALLKSGNPDISHLS 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ E G+ I R E++ L+S + K + L L + K + Sbjct: 179 IWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSGGKDGLELIYKPNVKD-------Q 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +E+ +KL D T +G HR DL + D+ GS G+++ ++ + A Sbjct: 232 DEFLEKLNHNLSRDLRLGYTSVGIHRDDLFIG-SDQRDITEFGSQGQKRSTVIALKAATF 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS----LNE 360 N P+LL+D++ LD +R +V G Q F T TD L + Sbjct: 291 NYYKNILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTDLEGIQDYVGKLKD 349 Query: 361 TAKFMRISNHQALCI 375 + I + I Sbjct: 350 QKQIFLIRQGKVESI 364 >gi|198275605|ref|ZP_03208136.1| hypothetical protein BACPLE_01774 [Bacteroides plebeius DSM 17135] gi|198271234|gb|EDY95504.1| hypothetical protein BACPLE_01774 [Bacteroides plebeius DSM 17135] Length = 396 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 158/376 (42%), Gaps = 21/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N L F + +G NG+GKTN+++A+ +LS + + Sbjct: 24 MWLKRISILNYKNLEQAELAFSRKMNCIIGKNGMGKTNLMDAVYYLSFCKSATNPIDSQN 83 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G ++ L+ R + + N + + + + Sbjct: 84 IRHEQD-FFVLQGFYETEDGDPEEVYCGLKRRQKKQFKR---NKKEYTRLSDHIGLIPLV 139 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E D Sbjct: 140 MVSPADTLLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALVQRNTLLKAELEPDEEL 199 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + E MA G + R + I+ + Y + ++ L+ A Sbjct: 200 MNVWEEMMASTGEVVFRKRQQFIDEFIPIFQSYYSYISQNQEEVKLSYQSH--------A 251 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + L R+ D + +L G H+ DLI+ + + GS G+ K L+ + LA Sbjct: 252 AEGDLLALLRANRQRDRVMGYSLKGIHKDDLIMQLGEFPMKRE-GSQGQNKTYLIALKLA 310 Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD---- 356 + T +G P++LLD+I LD + + ++V D QIF+T T++ D Sbjct: 311 QFEFLKRTGSGTTPLILLDDIFDKLDALRVEQIVKLVAGDNFGQIFITDTNRDHLDRILK 370 Query: 357 SLNETAKFMRISNHQA 372 + K + N + Sbjct: 371 KIEGDYKLFEVENGEV 386 >gi|302390801|ref|YP_003826621.1| DNA replication and repair protein RecF [Acetohalobium arabaticum DSM 5501] gi|302202878|gb|ADL11556.1| DNA replication and repair protein RecF [Acetohalobium arabaticum DSM 5501] Length = 374 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 93/375 (24%), Positives = 174/375 (46%), Gaps = 13/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FRNY +L L + IF+GDN GKTNILEAI LS G R +++ Sbjct: 1 MYLTNLFLKNFRNYHTLELKLNRNLNIFIGDNAEGKTNILEAIYLLSTGDSHRTNITSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 SF+ + + + K+E + ++IND ++ +++L ++ Sbjct: 61 VNWQQDSFY-----ISSLVNRKEQEFKIEFLFKNRKKEVKINDNKLQKLEDLLGYINAII 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSS 181 P + G +RR+F++ + ++ + + ++ R+++ RN LL EG Sbjct: 116 FSPEDLELVKGSPSKRRKFINLEISQVNSYYYHNLQEYRRIVKQRNNLLKEIREGKSSKD 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQS 239 Q+ ELG KI R+ ++ LS L +K ++LS LD + S Sbjct: 176 MLVVWNQQLIELGSKIITKRLNALDKLSILARLMHRKITDGLETLELSYQSSLDLNGNNS 235 Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 ++ + KKL ++ + ++ GPHR D+I + D T GS G+Q+ + Sbjct: 236 TTEEIETVFTKKLKANQQKEIDRGVSIFGPHRDDIIFEINDIN-TRKFGSQGQQRTAALA 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA + + G PILLLD++ + LD +++ L +++ + Q F+T T+ + L Sbjct: 295 LKLAELEFMKSEIGEYPILLLDDVFSELDNNRQQYLLKVIEN-RIQTFITSTEINRLHKL 353 Query: 359 NETAKFMRISNHQAL 373 + ++ + + Sbjct: 354 EKNKNIYQVKGGKVM 368 >gi|328883700|emb|CCA56939.1| DNA recombination and repair protein RecF [Streptomyces venezuelae ATCC 10712] Length = 373 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 162/369 (43%), Gaps = 20/369 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLSSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A +G I+LE R+ R +R D L +R Sbjct: 61 VRMGAERAVIRAAVTQGERSQL---IELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLSLVKGDPGERRRFLDELITARTPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233 D S + +A G ++ R+E+I L L + ++ I L Sbjct: 177 RGMDLSTLDVWDQHLARAGAELLAQRLELIAVLQPLADKAYEQLAPGGGPILLEYRPSAP 236 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G + L + L + RK + TL+GPHR +L++ D + S GE Sbjct: 237 GAGH-TREELYAQLIDALAEVRKQEIERGVTLVGPHRDELLLKLGDLPAK-GYASHGESW 294 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDK 352 + + LA L+ + G P+L+LD++ A LD +R L +V G Q+ +T D Sbjct: 295 SYALALRLASYDLLRSE-GNEPVLVLDDVFAELDARRRERLAELVAG-GEQVLVTAAVDD 352 Query: 353 SVFDSLNET 361 V L T Sbjct: 353 DVPGVLAGT 361 >gi|313894734|ref|ZP_07828295.1| DNA replication and repair protein RecF [Selenomonas sp. oral taxon 137 str. F0430] gi|312976643|gb|EFR42097.1| DNA replication and repair protein RecF [Selenomonas sp. oral taxon 137 str. F0430] Length = 373 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 97/376 (25%), Positives = 163/376 (43%), Gaps = 18/376 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +RNY L L FD IF+G N GKTNI+EA+ + S GR R S A++ Sbjct: 1 MRITRLELHSYRNYEILDLRFDPGVQIFLGANAQGKTNIIEALYYASFGRSHRTTSDAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G + R++ D+ +L +R R + EL L + Sbjct: 61 IRMGESA-----GRIDLSFLRHDVPGELSFTFERGHRRRILRAGEPLRQRELVGLLPMVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---S 181 P + G RRR+LD + P + ++ + ++R R +L + Sbjct: 116 FSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAILKDIRERLVPVD 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-------LDG 234 + Q+A +I R+ L + + VQ +L+++ L G Sbjct: 176 ALEPWDVQLARSAARIVTRRIAAAERLGA-LSGRVQAVLAAGEELTISYEIAHVPDDLPG 234 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + D L+ Y K L + R D T +GPH DL++ ++ ++GS G+Q+ Sbjct: 235 EKDGMADRLEVWYNKALSEFRFRDIARGSTGVGPHLDDLVLSVGGMSLR-SYGSQGQQRT 293 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + LA + ++ G APILLLD++ + LD D+R AL + Q F+T TD + Sbjct: 294 GALALKLAELFYLRDSVGEAPILLLDDVMSELDADRRAALLSFIRSEHIQTFITATDAAY 353 Query: 355 FDSLNETAKFMRISNH 370 F + + N Sbjct: 354 FPE-EQMGTVRYVRNG 368 >gi|271498581|ref|YP_003331606.1| DNA replication and repair protein RecF [Dickeya dadantii Ech586] gi|270342136|gb|ACZ74901.1| DNA replication and repair protein RecF [Dickeya dadantii Ech586] Length = 361 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 154/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L VG NG GKT++LEAI L GR FR A V Sbjct: 1 MALTRLLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F R+EG+E + + D +VR I+ V EL + L I Sbjct: 61 IRHEQAEFI-LHGRIEGLERERAVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL+R RN L + Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQ-VSHYGQLR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L I+ R E A+++ I + P LS + + Sbjct: 176 AWDRELVPLAEGISRWRAEYSAAIAADIASTCA-QFLPEFSLSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D T +GPH++D + A+ S G+ K+++ + LA Sbjct: 229 -DYADLLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 ++ G + L+D+ ++ LD +R L + +Q+F++ T + + D + E K Sbjct: 287 EFLTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGK 346 Query: 364 FMRISNHQA 372 R+ + Sbjct: 347 MFRVEQGKI 355 >gi|238926600|ref|ZP_04658360.1| possible recombination protein RecF [Selenomonas flueggei ATCC 43531] gi|238885546|gb|EEQ49184.1| possible recombination protein RecF [Selenomonas flueggei ATCC 43531] Length = 377 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 97/363 (26%), Positives = 161/363 (44%), Gaps = 18/363 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +R+Y +L L FD IF+G N GKTNI+EA+ + + GR R +S A++ Sbjct: 1 MQITELTLRSYRSYETLHLAFDPGVQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R+G+ + + R + G + R R ++ +R D L L + Sbjct: 61 IRVGADGAHIALSFRRHDVPGALSFTFARGAR-----RRIEYAGESLRQRD-LVGILPMV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---S 180 P + G RRR+LD + P + ++ + R+++ RN +L + Sbjct: 115 LFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTRILKQRNAVLKDIRERLAAP 174 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL------DG 234 +AQ+A+ I R + L + + VQ +L+L + G Sbjct: 175 DDLLPWDAQLAKSAAYIVTRRTSAVAQLGA-LSARVQSVLAAGEELTLVYDIAGAAPESG 233 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 D L Y K L +GR D T +GPH DL++ + + GS G+Q+ Sbjct: 234 AKDDMTEQLYLWYNKMLREGRARDIARAATGVGPHLDDLVLRVGGMNLR-SFGSQGQQRT 292 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + LA + G APILLLD++ + LD D+R AL + Q F+T TD + Sbjct: 293 GALALKLAELFYLQENVGEAPILLLDDVMSELDADRRRALLDFIRHENIQTFITATDAAY 352 Query: 355 FDS 357 F + Sbjct: 353 FPA 355 >gi|86139415|ref|ZP_01057984.1| recombination protein F [Roseobacter sp. MED193] gi|85823918|gb|EAQ44124.1| recombination protein F [Roseobacter sp. MED193] Length = 365 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 136/370 (36%), Positives = 196/370 (52%), Gaps = 11/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L D + G NG GKTNILEA+S SPGRG RRAS AD+ Sbjct: 2 LALTELTLSHFRSHLRAELHLDGRPVAIHGKNGAGKTNILEAVSLFSPGRGLRRASAADM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + A ++ + +I E R VR D L + R+ W Sbjct: 62 VRRPEGLGWKLKAVLQAPDQAYEIETWSEEGAARQVRI----DNKASNQIALGQICRVVW 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP MDR++ + RRRFLDR+ + DP H + +E+ MR RNRLL E D++W Sbjct: 118 LVPVMDRLWVEAAEGRRRFLDRIALSFDPSHAEATLTYEKAMRERNRLLKEQVRDAAWYR 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +EAQM G +I+ AR + L + + FP L L +G+ QS + Sbjct: 178 VVEAQMGTAGHRIHTARCSAVQRLIE--AQDKAETAFPTAHLDLVQS-EGEMPQS----E 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + + L +GR D R+L+GPHRSDLI Y K I STGEQK +LV + LA+A Sbjct: 231 ADLVQALAEGRMRDMKVGRSLVGPHRSDLIGTYVHKGIAAKECSTGEQKALLVSLILANA 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ + G PILLLDE++AHLD +R AL+ + +G+Q +MTGT +F L A+ Sbjct: 291 RALTASEGAPPILLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGAELFAELGTRAQV 350 Query: 365 MRISNHQALC 374 + + + + + Sbjct: 351 LEVGDMEGIS 360 >gi|84514652|ref|ZP_01002016.1| recombination protein F [Loktanella vestfoldensis SKA53] gi|84511703|gb|EAQ08156.1| recombination protein F [Loktanella vestfoldensis SKA53] Length = 366 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 189/365 (51%), Gaps = 15/365 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S R++ L D + G NG GKTNILEA+S LSPGRG RRA D+ Sbjct: 4 LALLQLTLSHLRSHKRAVLDLDPRPLAIFGPNGAGKTNILEAVSLLSPGRGLRRAGADDL 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + ++ + + +I E R L+I+ V L + R+ W Sbjct: 64 ARRPEALGWKITGVLQSLYQVHEIETWAEAG---QPRQLRIDGKTAPQVA-LGRIARVLW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR+++ + RRRFLDR + +P H ++ +E+ MR RNRLL + D W + Sbjct: 120 LVPAMDRLWTEGADGRRRFLDRATLSFEPGHADVVLTYEKAMRERNRLLKDMVRDPHWYA 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +IE QMA +I R + + + + FP +L+LT L Sbjct: 180 AIEGQMAAAATQITANRTK--AIAALMAAQAAAVSAFPTAQLTLTYS---------DPLP 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L D R D + RTL+GPHR+DL + DK + STGEQK +L+ + LA+A Sbjct: 229 TDLQSALADHRSRDMAAGRTLLGPHRADLDAVFADKHVPARDCSTGEQKALLISLILANA 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G PILLLDE++AHLD +R AL+ + +G+Q FMTGT +F L A++ Sbjct: 289 RALAQDFGAPPILLLDEVAAHLDATRRAALYDEICALGAQAFMTGTGPELFAELGSRAQY 348 Query: 365 MRISN 369 ++ Sbjct: 349 AEVTE 353 >gi|145634167|ref|ZP_01789878.1| recombination protein F [Haemophilus influenzae PittAA] gi|145268611|gb|EDK08604.1| recombination protein F [Haemophilus influenzae PittAA] Length = 359 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 84/367 (22%), Positives = 157/367 (42%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + I ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGKIQESQHQWSIGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ + + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + I L+D+ ++ LD+DKR L + GSQ+F+T K + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|15595201|ref|NP_064723.1| recombination protein F [Pseudomonas aeruginosa PAO1] gi|116053723|ref|YP_788158.1| recombination protein F [Pseudomonas aeruginosa UCBPP-PA14] gi|254243117|ref|ZP_04936439.1| RecF protein [Pseudomonas aeruginosa 2192] gi|296386475|ref|ZP_06875974.1| recombination protein F [Pseudomonas aeruginosa PAb1] gi|313111475|ref|ZP_07797276.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa 39016] gi|13959479|sp|Q9I7C3|RECF_PSEAE RecName: Full=DNA replication and repair protein recF gi|122262142|sp|Q02V78|RECF_PSEAB RecName: Full=DNA replication and repair protein recF gi|9945821|gb|AAG03393.1|AE004440_3 RecF protein [Pseudomonas aeruginosa PAO1] gi|115588944|gb|ABJ14959.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa UCBPP-PA14] gi|126196495|gb|EAZ60558.1| RecF protein [Pseudomonas aeruginosa 2192] gi|310883778|gb|EFQ42372.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa 39016] Length = 369 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 17/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I GDNG GKT++LEAI L R FR A V Sbjct: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F +V G+A ++ I E + + ++I+ R +L + L + Sbjct: 61 IQY-EEAACTVFGQVMLANGIASNLGISRERQGE---FTIRIDGQNARSAAQLAETLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + +++ +I+ R I AL + E + E L+L+ + D+ Sbjct: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLA-ELVSLDDLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --DLLEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHN-AAEILSRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 LI+ + L+D++ + LDE R AL R++ D+G Q+F+T D + + Sbjct: 288 GHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDT 347 Query: 361 TAKFMRISNHQA 372 + + + Sbjct: 348 PVSMFHVEHGKV 359 >gi|303228584|ref|ZP_07315411.1| putative DNA replication and repair protein RecF [Veillonella atypica ACS-134-V-Col7a] gi|302516763|gb|EFL58678.1| putative DNA replication and repair protein RecF [Veillonella atypica ACS-134-V-Col7a] Length = 366 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 94/369 (25%), Positives = 162/369 (43%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY L L + + G NG GKTNILEAI + G+ R +D+ Sbjct: 1 MRINSLQLFQFRNYKDLTLDLQPEIIVLYGTNGAGKTNILEAIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + E E ++IKL + + +++ND I EL L Sbjct: 61 LLFNANEA-GIVVNFEKKETPQKVNIKLFRQGP---KDIRLNDTKI-SQKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RRRFLD + + +++ + RL++ RN LL E + Sbjct: 116 FCPEDLQLIKGSPSGRRRFLDMEISQTSATYYHQLLQYNRLLQQRNTLLKEYRGKQNIPL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + Q+A++ I R+E + ++ LI +K L++ + Sbjct: 176 AEWDVQLADMAAFIVKKRMESLKKINLLIDLMNRKLTGGLENLTIGYEQPYGEEGHMVYT 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + L + D T +GPHR DL + D GS G+Q+ ++ + L+ Sbjct: 236 KEAFYDLLQEALPQDRHRMTTSVGPHRDDLRF-FSDAIDLKKFGSQGQQRTAVLSLKLSE 294 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 I + G P+LLLD++ + LDE +RN L + + Q +T TD F+++ + + Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDEARRNNLLQFI-HKRIQTVITTTDIHDFENM-QGVQ 352 Query: 364 FMRISNHQA 372 F++ Sbjct: 353 FIQCQEGHI 361 >gi|197286952|ref|YP_002152824.1| recombination protein F [Proteus mirabilis HI4320] gi|227354807|ref|ZP_03839224.1| recombination protein F [Proteus mirabilis ATCC 29906] gi|132248|sp|P22839|RECF_PROMI RecName: Full=DNA replication and repair protein recF gi|226737819|sp|B4F0U7|RECF_PROMH RecName: Full=DNA replication and repair protein recF gi|150880|gb|AAA83960.1| putative [Proteus mirabilis] gi|194684439|emb|CAR46163.1| dna replication and repair protein [Proteus mirabilis HI4320] gi|227165125|gb|EEI49956.1| recombination protein F [Proteus mirabilis ATCC 29906] Length = 362 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 153/369 (41%), Gaps = 12/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I FRN L VG NG GKT+ILEAI L GR FR A V Sbjct: 1 MILSRLLIRHFRNIEQADLPLADGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSAQANRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +F R+ G++ + ++D ++I+ + EL K L + Sbjct: 61 IQHDENAFI-LHGRLSGLDEESRGYSIGLSKDREGNSTVRIDGSDGHKIAELAKLLPMQL 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR F+D F +PR D +R+++ RN L + Sbjct: 120 ITPEGFTLLNGGPKYRRAFIDWGCFHNEPRFFAAWSDLKRVLKQRNAALRQASSYRQLL- 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R E ++ I E Q P L ++ + Sbjct: 179 PWDKELILLTEQISQWRAEYTEDIAKDIEETCQ-LFLPEFTLKVSFQRGWDKET------ 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D + T +G H++DL + + S G+ K+++ + LA Sbjct: 232 -DYAQLLERQFERDKVLSYTSLGAHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQG 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + G + LLD+ ++ LD ++R L + +Q+F++ T V D L+ ++ Sbjct: 290 EYFTRKNGQRCLYLLDDFASELDANRRQLLAERLKSTQAQVFVSAITSGQVKDMLDVNSR 349 Query: 364 FMRISNHQA 372 + + + Sbjct: 350 LFSVEHGKI 358 >gi|45655917|ref|YP_000003.1| DNA repair and genetic recombination protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|51316280|sp|Q72WD4|RECF_LEPIC RecName: Full=DNA replication and repair protein recF gi|45599150|gb|AAS68640.1| DNA repair and genetic recombination protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 365 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 170/375 (45%), Gaps = 15/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L I FRN+ L L FD++ FVGDNG GKTN+LEAI LS + FR + +++ Sbjct: 1 MFLKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS ++F +++ + + I ++ R L+ N I+ +L Sbjct: 61 IRWGSENYF-LRGKIKNNLKESVLEIGFTSKPSVK-RKLKFNQEEIKKRTDLIGKFITVL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P +I G ERR+F+D + + DP + ++++ ++++ RN LL G D S S Sbjct: 119 LTPMDLKIIEGGPAERRKFIDAFISSFDPFYLEFLLEYNKILKHRNALLKSGNLDISHLS 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ E G+ I R E++ L+S + K + L L + K + Sbjct: 179 IWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSGGKDGLELIYKPNVKD-------Q 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +E+ +KL D T +G HR DL + D+ GS G+++ ++ + A Sbjct: 232 DEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQRDITEFGSQGQKRSTVIALKAATF 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS----LNE 360 + P+LL+D++ LD +R +V G Q F T TD L + Sbjct: 291 NYYKDILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTDLEGIQDYVGKLKD 349 Query: 361 TAKFMRISNHQALCI 375 + I + I Sbjct: 350 QKQIFLIRQGKVEPI 364 >gi|84394123|ref|ZP_00992857.1| recombination protein F [Vibrio splendidus 12B01] gi|84375269|gb|EAP92182.1| recombination protein F [Vibrio splendidus 12B01] Length = 359 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 73/369 (19%), Positives = 149/369 (40%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN + + + +G NG GKT++LEA+ L GR F+ + + Sbjct: 1 MPLSRLIVKQFRNIEACDIQPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + I I + V+ I+ + + +L + L + Sbjct: 61 IQNECSELFVHGRFLTSDQFELPIGINKQRDGTTEVK---ISGQTGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF + +RL + RN LL + S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTAT-NYRELS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L I+ R + L + E P ++ + + D Sbjct: 177 YWDQELARLAESISQWRATYVEQLKEVAEEICA-TFLPEFEIKINYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + +Q+F++ T + D +E ++ Sbjct: 288 QHLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSR 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 MFHVEHGKI 356 >gi|167036435|ref|YP_001664013.1| recombination protein F [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114861|ref|YP_004185020.1| DNA replication and repair protein RecF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226737846|sp|B0KAG3|RECF_THEP3 RecName: Full=DNA replication and repair protein recF gi|166855269|gb|ABY93677.1| DNA replication and repair protein RecF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927952|gb|ADV78637.1| DNA replication and repair protein RecF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 362 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 157/372 (42%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRN ++ F IF G N GK+N+LE+I LS GR FR + ++ Sbjct: 1 MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G F E + + K + +++N I+ EL L Sbjct: 61 IKFGEDYFYVKAIICQENNDKKIEFGYK-----KNENKVIKVNGNKIKSTSELLGQLLTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181 P I RR++LD + ++ + ++ + +++ RN+LL + S Sbjct: 116 IFSPEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGKSKS 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+ E G KI + R + + I +++ + + ++ + K Sbjct: 176 ILEIFDDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +K+ +KL +D T +GPHR D + + + + S G+Q+ + + L Sbjct: 236 IVKKRLKEKLSKNIDVDLRYFTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTAALCLKL 294 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 + ++ T P+LLLD++ + LDE+++ + + G Q F+T T K Sbjct: 295 SEFEILKKETSEKPVLLLDDVMSELDENRKKYVLERLK--GFQTFITHTTKRYLKG---- 348 Query: 362 AKFMRISNHQAL 373 + +ISN + Sbjct: 349 DCYFKISNGVVI 360 >gi|303230615|ref|ZP_07317365.1| putative DNA replication and repair protein RecF [Veillonella atypica ACS-049-V-Sch6] gi|302514670|gb|EFL56662.1| putative DNA replication and repair protein RecF [Veillonella atypica ACS-049-V-Sch6] Length = 366 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 163/369 (44%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + +FRNY L L + + G NG GKTNILEAI + G+ R +D+ Sbjct: 1 MRINSLQLFQFRNYKDLTLDLQPEIIVLYGTNGAGKTNILEAIYVGTIGKSHRTNDTSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + E E L ++IKL + + +++ND I EL L Sbjct: 61 LLFNANEA-GIVVNFEKKETLQKVNIKLFRQGP---KDIRLNDTKI-SQKELIGTLNTVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RRRFLD + + +++ + RL++ RN LL E + Sbjct: 116 FCPEDLQLIKGSPSGRRRFLDMEISQTSATYYHQLLQYNRLLQQRNTLLKEYRGKQNIPL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + Q+A++ I R+E + ++ LI +K L++ + Sbjct: 176 AEWDVQLADMAAFIVKKRMESLKKINLLIDLMNRKLTGGLENLTIGYEQPYGEEGHMVYT 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KE + L + D T +GPHR DL + D GS G+Q+ ++ + L+ Sbjct: 236 KEAFYDLLQEALPQDRHRMTTSVGPHRDDLRF-FSDAIDLKKFGSQGQQRTAVLSLKLSE 294 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 I + G P+LLLD++ + LDE +RN L + + Q +T TD F+++ + + Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDEARRNNLLQFI-HKRIQTVITTTDIHDFENM-QGVQ 352 Query: 364 FMRISNHQA 372 F++ Sbjct: 353 FIQCQEGHI 361 >gi|302543961|ref|ZP_07296303.1| RecF protein [Streptomyces hygroscopicus ATCC 53653] gi|302461579|gb|EFL24672.1| RecF protein [Streptomyces himastatinicus ATCC 53653] Length = 383 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 96/388 (24%), Positives = 163/388 (42%), Gaps = 28/388 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + T FVG NG GKTN++EA+ +L+ R +S A + Sbjct: 1 MHVTHLSLADFRSYARAEVALGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A V+G ++LE ++ R +R D L LR Sbjct: 61 VRMGAERAVVRAAVVQGDRQQL---VELELNPGKANRARINRSSQVRPRDAL-GILRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDDLITARAPRMAGIRSDYDRVLKQRNSLLKTAAMARRHGS 176 Query: 181 ------------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKL 226 + + +A G ++ R ++I+ L L + ++ + L Sbjct: 177 RSGSGGSGDAALATLDVWDQHLARTGAELLAQRFDLISVLQPLADKAYEQLAPGGGPVLL 236 Query: 227 SLTGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 G S L E L D RK + TL+GPHR DL++ + Sbjct: 237 EYRGSAGEDLAAAGSREELYERLMAALADARKQEIERGVTLVGPHRDDLVLKL-GRLPAK 295 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 + S GE + + LA L+ G P+L+LD++ A LD +R L +V G Q Sbjct: 296 GYASHGESWSYALALRLASYDLLRAE-GAEPVLVLDDVFAELDSRRRERLAELVA-PGEQ 353 Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372 + +T + + E ++ ++ + Sbjct: 354 VLVTAAVEEDVPEVLEGVRY-AVAEGEV 380 >gi|29840206|ref|NP_829312.1| recombination protein F [Chlamydophila caviae GPIC] gi|33301500|sp|Q823G6|RECF_CHLCV RecName: Full=DNA replication and repair protein recF gi|29834554|gb|AAP05190.1| recF protein [Chlamydophila caviae GPIC] Length = 367 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 96/368 (26%), Positives = 158/368 (42%), Gaps = 10/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L + FRNY + G+N GKTN+LEA+ LS GR FR + Sbjct: 1 MKILSLRLKNFRNYKEAEVSLSPDMNYIFGENAQGKTNLLEALYVLSLGRSFRTTHLTEA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GS FF +E L T D+ + + + I+ + +L + I Sbjct: 61 IFFGSSHFF-----LEMTFEKDGFCHTLSTYVDKQGKKILCDHSPIKTLSQLIGMVPIVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + SG +RR FL+ ++ DP+++ + + R + RN LL +S S Sbjct: 116 FSSKDRSLISGAPADRRLFLNLLLSQCDPQYKHTLSYYHRALLQRNTLLKTKQ--TSTLS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A LG + ++R L+ L+ E +++ L + + S A+ Sbjct: 174 VWDEQLATLGAYLTVSRYFCCEQLNQLVQELWSNSLSEQLRIKFKSSLIKQGNLSQEAII 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EE K+L D T +GPHR D + D ++ S G++ +L + LA Sbjct: 234 EELRKQLTTALHRDLELGTTSVGPHREDFTLMINDLSV-AQFSSEGQKHSLLAILRLAEC 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 I N P+ +D+I A LD + + L + +G Q MT T+ SL+ET+K Sbjct: 293 LYIKNIYNACPLFCMDDIHAGLDNHRISQLLDLAPTLG-QTLMTSTNIPH-QSLSETSKI 350 Query: 365 MRISNHQA 372 ++ Q Sbjct: 351 FSVNQAQI 358 >gi|107098997|ref|ZP_01362915.1| hypothetical protein PaerPA_01000003 [Pseudomonas aeruginosa PACS2] gi|218888749|ref|YP_002437613.1| recombination protein F [Pseudomonas aeruginosa LESB58] gi|254237754|ref|ZP_04931077.1| RecF protein [Pseudomonas aeruginosa C3719] gi|226737820|sp|B7V0N8|RECF_PSEA8 RecName: Full=DNA replication and repair protein recF gi|126169685|gb|EAZ55196.1| RecF protein [Pseudomonas aeruginosa C3719] gi|218768972|emb|CAW24730.1| RecF protein [Pseudomonas aeruginosa LESB58] Length = 369 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 17/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I GDNG GKT++LEAI L R FR A V Sbjct: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F +V G+A ++ I E + + ++I+ R +L + L + Sbjct: 61 IQY-EEAACTVFGQVMLANGIASNLGISRERQGE---FTIRIDGQNARSAAQLAETLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + +++ +I+ R I AL + E + E L+L+ + D+ Sbjct: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLA-ELVSLDDLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --DLLEVLASSLLRDQQMGHTQAGPQRADLRIRLSGHN-AAEILSRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 LI+ + L+D++ + LDE R AL R++ D+G Q+F+T D + + Sbjct: 288 GHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDT 347 Query: 361 TAKFMRISNHQA 372 + + + Sbjct: 348 PVSMFHVEHGKV 359 >gi|218708100|ref|YP_002415721.1| recombination protein F [Vibrio splendidus LGP32] gi|254790499|sp|B7VGI6|RECF_VIBSL RecName: Full=DNA replication and repair protein recF gi|218321119|emb|CAV17069.1| DNA replication and repair protein recF [Vibrio splendidus LGP32] Length = 359 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 73/369 (19%), Positives = 152/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN + + + +G NG GKT++LEA+ L GR F+ + + Sbjct: 1 MPLSRLIVKQFRNIEACDIQPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLSGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F R + ++ I + + D + ++I+ + + +L + L + Sbjct: 61 IQNECSELF-VHGRFMTSDQF-ELPIGINKQRDGTT-EVKISGQTGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF + +RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L I+ R + L + E P ++ + + D Sbjct: 177 YWDQELARLAESISQWRATYVEQLKEVAEEICA-TFLPEFEIKINYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + +Q+F++ T + D +E ++ Sbjct: 288 QHLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSR 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 MFHVEHGKI 356 >gi|49086132|gb|AAT51330.1| PA0003 [synthetic construct] Length = 370 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 17/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I GDNG GKT++LEAI L R FR A V Sbjct: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F +V G+A ++ I E + + ++I+ R +L + L + Sbjct: 61 VQY-EEAACTVFGQVMLANGIASNLGISRERQGE---FTIRIDGQNARSAAQLAETLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + +++ +I+ R I AL + E + E L+L+ + D+ Sbjct: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLA-ELVSLDDLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --DLLEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHN-AAEILSRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 LI+ + L+D++ + LDE R AL R++ D+G Q+F+T D + + Sbjct: 288 GHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDT 347 Query: 361 TAKFMRISNHQA 372 + + + Sbjct: 348 PVSMFHVEHGKV 359 >gi|145628067|ref|ZP_01783868.1| recombination protein F [Haemophilus influenzae 22.1-21] gi|144979842|gb|EDJ89501.1| recombination protein F [Haemophilus influenzae 22.1-21] Length = 359 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 83/367 (22%), Positives = 157/367 (42%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLNFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I E + P ++++++ + + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALCPEI-EQTCRLFLPELEINVSFHQGWEKNT------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T GP ++D + S G+ K+++ + LA Sbjct: 229 -DYAEVLEQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T K + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITKRQLKEMQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|167038679|ref|YP_001661664.1| recombination protein F [Thermoanaerobacter sp. X514] gi|256751452|ref|ZP_05492330.1| DNA replication and repair protein RecF [Thermoanaerobacter ethanolicus CCSD1] gi|300913761|ref|ZP_07131078.1| DNA replication and repair protein RecF [Thermoanaerobacter sp. X561] gi|307723222|ref|YP_003902973.1| DNA replication and repair protein RecF [Thermoanaerobacter sp. X513] gi|226737847|sp|B0K0X1|RECF_THEPX RecName: Full=DNA replication and repair protein recF gi|166852919|gb|ABY91328.1| DNA replication and repair protein RecF [Thermoanaerobacter sp. X514] gi|256749671|gb|EEU62697.1| DNA replication and repair protein RecF [Thermoanaerobacter ethanolicus CCSD1] gi|300890446|gb|EFK85591.1| DNA replication and repair protein RecF [Thermoanaerobacter sp. X561] gi|307580283|gb|ADN53682.1| DNA replication and repair protein RecF [Thermoanaerobacter sp. X513] Length = 362 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRN ++ F IF G N GK+N+LE+I LS GR FR + ++ Sbjct: 1 MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G F E + + K + +++N I+ EL L Sbjct: 61 IKFGEDYFYVKAIICQENNDKKIEFGYK-----KNENKVIKVNGNKIKSTSELLGQLLTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181 P I RR++LD + ++ + ++ + +++ RN+LL + S Sbjct: 116 IFSPEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGKSKS 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+ E G KI + R + + I +++ + + ++ + K Sbjct: 176 ILEIFDDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +K+ +KL +D T +GPHR D + + + + S G+Q+ + + L Sbjct: 236 IVKKRLKEKLSKNIDVDLRYFTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTAALCLKL 294 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 + ++ T P+LLLD++ + LDE+++ + + G Q F+T T K L Sbjct: 295 SEFEILKKETSEKPVLLLDDVMSELDENRKKYVLERLK--GFQTFITHTTKR---DLKGD 349 Query: 362 AKFMRISNHQAL 373 + +ISN + Sbjct: 350 C-YFKISNGVVI 360 >gi|16272929|ref|NP_439154.1| recombination protein F [Haemophilus influenzae Rd KW20] gi|260580082|ref|ZP_05847912.1| recombination protein F [Haemophilus influenzae RdAW] gi|1172892|sp|P43767|RECF_HAEIN RecName: Full=DNA replication and repair protein recF gi|1574021|gb|AAC22653.1| DNA/ATP binding protein (recF) [Haemophilus influenzae Rd KW20] gi|260093366|gb|EEW77299.1| recombination protein F [Haemophilus influenzae RdAW] Length = 359 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 84/367 (22%), Positives = 159/367 (43%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + I ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSIGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E ALS I + Q P ++++++ + + Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALSPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|86147177|ref|ZP_01065493.1| recombination protein F [Vibrio sp. MED222] gi|85835061|gb|EAQ53203.1| recombination protein F [Vibrio sp. MED222] Length = 359 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 73/369 (19%), Positives = 153/369 (41%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN + ++ + +G NG GKT++LEA+ L GR F+ + + Sbjct: 1 MPLSRLIVKQFRNIEACDILPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F R + ++ I + + D + ++I+ + + +L + L + Sbjct: 61 IQNECSELF-VHGRFMTSDQF-ELPIGINKQRDGTT-EVKISGQTGQKLAQLAQVLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D VF + +RL + RN LL S Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE-LS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A L I+ R + L + E P ++ + + D Sbjct: 177 YWDQELARLAESISQWRATYVEQLKEVAEEICA-TFLPEFEIKINYYRGWDKDTP----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T GP+++DL + + S G+ K+++ + +A Sbjct: 231 --YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + ++ TG I L+D+ ++ LD +R L + +Q+F++ T + D +E ++ Sbjct: 288 QHLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSR 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 MFHVEHGKI 356 >gi|145638187|ref|ZP_01793797.1| recombination protein F [Haemophilus influenzae PittII] gi|145272516|gb|EDK12423.1| recombination protein F [Haemophilus influenzae PittII] gi|309751343|gb|ADO81327.1| DNA replication and repair protein RecF [Haemophilus influenzae R2866] Length = 359 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 83/367 (22%), Positives = 157/367 (42%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLHFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ + + Sbjct: 176 VWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + I L+D+ ++ LD+DKR L + GSQ+F+T K + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|307565627|ref|ZP_07628105.1| DNA replication and repair protein RecF [Prevotella amnii CRIS 21A-A] gi|307345659|gb|EFN91018.1| DNA replication and repair protein RecF [Prevotella amnii CRIS 21A-A] Length = 368 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 162/376 (43%), Gaps = 19/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L + F+G NG GKTN+L+AI +LS + ++V Sbjct: 1 MRLDKLSIINYKNIQTATLELSPKLNCFIGHNGEGKTNLLDAIYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ +FF G + R + + + N + + + + + + Sbjct: 61 IQHGT-NFFVIEGNYTNEHGDKEQVYCGMKRGQK--KHFKRNKKEYKRLSQHIGLVPLVF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 + P+ + G S ERR+ +D ++ D + + + + ++ RN LL + D + Sbjct: 118 ISPADSSLIEGGSEERRKLMDVVISQYDAAYIEALTRYNKALQQRNSLLKQEEGLDETLL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QMAE G + R + L + + + H K+SLT G+ Sbjct: 178 ELLEMQMAEYGEYVFKKRTVFVEELQPIFQNIYKCISNDHEKVSLTYMSHGQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + R D + +L G H+ DL++ D I +GS G+ K ++ + LA Sbjct: 230 RGNLLDIIRNSRDKDKIMGYSLHGVHKDDLVMLLGDYPIK-RYGSQGQNKTYVLSLKLAQ 288 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE- 360 + P+LLLD+I LD ++ + +V+ D QIF+T T++ D + Sbjct: 289 FDFLCRTALHNTPLLLLDDIFDKLDSNRVKQIINLVSGDDFGQIFITDTNREHLDKILHG 348 Query: 361 ---TAKFMRISNHQAL 373 K + + + Sbjct: 349 GDFKYKLFSVESGDVI 364 >gi|145637297|ref|ZP_01792958.1| recombination protein F [Haemophilus influenzae PittHH] gi|145269549|gb|EDK09491.1| recombination protein F [Haemophilus influenzae PittHH] Length = 359 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 156/367 (42%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ + + Sbjct: 176 VWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T K + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITKRQLKEMQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|302346673|ref|YP_003814971.1| DNA replication and repair protein RecF [Prevotella melaninogenica ATCC 25845] gi|302150770|gb|ADK97031.1| DNA replication and repair protein RecF [Prevotella melaninogenica ATCC 25845] Length = 368 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 81/375 (21%), Positives = 160/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L+I ++N + L A+ F+G NG GKTN+L+A+ +LS + ++V Sbjct: 1 MQLEKLSIINYKNIQAATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +F G + R + + + N + + + + + + Sbjct: 61 MRHDAD-YFVLEGDYCTDTGEHEQVYCGMKRGSK--KHFKRNKKEYKRLSQHIGLVPLIF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P+ + G S ERR+ +D ++ D + + + + ++ RN LL E D++ Sbjct: 118 VSPADATLIEGGSEERRKLMDVVISQYDTPYIESLSRYNKALQQRNSLLKQEEEPDATLL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QMAE G + R + L+ + Q ++SL + Sbjct: 178 ELLEMQMAEHGEAVYKKRAAFVEELTPVFQRIYQTICSEREQVSLEYVSHCQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + R D + +L G H+ DL++ + GS G+ K ++ + LA Sbjct: 230 RGDLLDVIQRDRAKDRIMGYSLHGTHKDDLVMKLGGYPMKRE-GSQGQNKTYVLALKLAQ 288 Query: 304 ARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE- 360 + T G P+LLLD+I LD + + R+V+ D QIF+T T++ D + + Sbjct: 289 FDFLRRTAGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIFITDTNRDHLDKILQG 348 Query: 361 ---TAKFMRISNHQA 372 K + + Sbjct: 349 SGFNYKLFSVEGGEI 363 >gi|323141434|ref|ZP_08076324.1| putative DNA replication and repair protein RecF [Phascolarctobacterium sp. YIT 12067] gi|322414090|gb|EFY04919.1| putative DNA replication and repair protein RecF [Phascolarctobacterium sp. YIT 12067] Length = 375 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 164/377 (43%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L FRNY S L + +F G N GKTN+LEAI + + G R ++ ++ Sbjct: 1 MKINSLYAVNFRNYESCSLQLSSMINVFYGQNAQGKTNLLEAIFYSAFGMSHRTSAEEEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ++G+ + + + G ++ IK + +R + + ++ +R E L Sbjct: 61 LKMGADA-MAVGVEYASVSGSHEVKIKKYRQHERWQKEILLDGARVR-PKEHYGALNTVM 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181 P ++ G RRRF D + DP + ++ + R+++ RNRLL E + Sbjct: 119 FSPEDLQLVKGEPALRRRFFDMQIAQTDPVYYDLLLKYNRVLQQRNRLLKELRDNGGTPD 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-----F 236 + L I R+ + L ++ E L + + Sbjct: 179 ILQPWNEEFIRLAAAIVRRRLAALGKLQAIAGEIYSSITKGSEMLQVRYEQKANNSTLLY 238 Query: 237 DQSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 QS A E+ Y ++L + +++D + T IGPHR DL + ++ GS G+Q+ Sbjct: 239 PQSAEAAAEDFYREQLSERQRLDILRGNTGIGPHRDDLQLLLNGLSLRA-FGSQGQQRSG 297 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + + L+ + + N G P+LLLD++ + LD +R L + D Q F+T D+ + Sbjct: 298 ALALKLSQLQYVKNELGEFPVLLLDDVMSELDNSRRAQLLLFI-DGRVQTFITVNDRELI 356 Query: 356 DSLNETAKFMRISNHQA 372 L A + +IS Sbjct: 357 PELAGNA-YFKISGGSI 372 >gi|152985186|ref|YP_001345399.1| recombination protein F [Pseudomonas aeruginosa PA7] gi|166220723|sp|A6UX64|RECF_PSEA7 RecName: Full=DNA replication and repair protein recF gi|150960344|gb|ABR82369.1| RecF protein [Pseudomonas aeruginosa PA7] Length = 369 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 162/372 (43%), Gaps = 17/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I GDNG GKT++LEAI L R FR A V Sbjct: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F +V G+A ++ I E + + ++I+ R +L + L + Sbjct: 61 IQY-EEAACTVFGQVMLANGIASNLGISRERQGE---FTIRIDGQNARSAAQLAETLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + +++ +I+ R I AL + E + E L+L+ + D+ Sbjct: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLA-ELVSLDDLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --DLQDVLASSLLRDQQMGHTQAGPQRADLRIRLAGHN-AAEILSRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 LI+ + L+D++ + LDE R AL R++ D+G Q+F+T D + + Sbjct: 288 GHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDT 347 Query: 361 TAKFMRISNHQA 372 + + + Sbjct: 348 PVAMFHVEHGKV 359 >gi|255023617|ref|ZP_05295603.1| recombination protein F [Listeria monocytogenes FSL J1-208] Length = 317 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 73/323 (22%), Positives = 141/323 (43%), Gaps = 11/323 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG S+ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P + G RRRFL+ + + P + + +++R+++ RN+ L + D Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + Q A++ + + R + I L + + + L + + + Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDN 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K + +K+ ++ + TLIGPHR D + + + GS G+Q+ + I Sbjct: 236 PDVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294 Query: 300 FLAHARLISNTTGFAPILLLDEI 322 LA LI TG P+LLLD++ Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDV 317 >gi|260581930|ref|ZP_05849726.1| recombinational DNA repair ATPase [Haemophilus influenzae NT127] gi|260095123|gb|EEW79015.1| recombinational DNA repair ATPase [Haemophilus influenzae NT127] Length = 359 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 83/367 (22%), Positives = 157/367 (42%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLNFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ + + Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALCPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + I L+D+ ++ LD+DKR L + GSQ+F+T K + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|319775075|ref|YP_004137563.1| DNA replication and repair protein RecF [Haemophilus influenzae F3047] gi|329123014|ref|ZP_08251585.1| recombination protein F [Haemophilus aegyptius ATCC 11116] gi|317449666|emb|CBY85872.1| DNA replication and repair protein RecF [Haemophilus influenzae F3047] gi|327471945|gb|EGF17385.1| recombination protein F [Haemophilus aegyptius ATCC 11116] Length = 359 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 83/367 (22%), Positives = 159/367 (43%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E ALS I + Q P ++++++ + + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALSPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFAGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|288802280|ref|ZP_06407720.1| RecF protein [Prevotella melaninogenica D18] gi|288335247|gb|EFC73682.1| RecF protein [Prevotella melaninogenica D18] Length = 368 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 81/375 (21%), Positives = 160/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L+I ++N + L A+ F+G NG GKTN+L+A+ +LS + ++V Sbjct: 1 MQLEKLSIINYKNIQAATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +F G + R + + + N + + + + + + Sbjct: 61 MRHDAD-YFVLEGDYCTDAGEHEQVYCGMKRGSK--KHFKRNKKEYKRLSQHIGLVPLIF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P+ + G S ERR+ +D ++ D + + + + ++ RN LL E D++ Sbjct: 118 VSPADATLIEGGSEERRKLMDVVISQYDTPYIESLSRYNKALQQRNSLLKQEEEPDATLL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QMAE G + R + L+ + Q ++SL + Sbjct: 178 ELLEMQMAEHGEAVYKKRAAFVEELTPVFQRIYQTICSEREQVSLEYVSHCQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + R D + +L G H+ DL++ + GS G+ K ++ + LA Sbjct: 230 RGDLLDVIQRDRAKDRIMGYSLHGTHKDDLVMKLGGYPMKRE-GSQGQNKTYVLALKLAQ 288 Query: 304 ARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE- 360 + T G P+LLLD+I LD + + R+V+ D QIF+T T++ D + + Sbjct: 289 FDFLRRTAGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIFITDTNRDHLDKILQG 348 Query: 361 ---TAKFMRISNHQA 372 K + + Sbjct: 349 SGFNYKLFSVEGGEI 363 >gi|114798067|ref|YP_759290.1| DNA replication and repair protein RecF [Hyphomonas neptunium ATCC 15444] gi|114738241|gb|ABI76366.1| DNA replication and repair protein RecF [Hyphomonas neptunium ATCC 15444] Length = 370 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 130/370 (35%), Positives = 208/370 (56%), Gaps = 9/370 (2%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 + L++++FRNYA L L DA+ G NG GKTN+LEA+S PGRG R A +++T Sbjct: 3 ALTRLSLTDFRNYAGLTLRLDARPVCLYGSNGAGKTNLLEAVSQFGPGRGLRSAQLSEMT 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R +P ++ A ++ + ISI L+T + R ++I+ +L + +RI WL Sbjct: 63 RRDAPGGWALAATLDDEQK---ISITLDTA-GTAKRTVRIDGAPA-SPGDLAERIRIVWL 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P+MD +F G + +RRRF DR+V A P H + +++ + RN L+ G+ D +W + Sbjct: 118 TPAMDGVFRGGASDRRRFFDRLVMAHLPAHGKAAARYDKALAERNALIERGHVDPAWADA 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS--LTGFLDGKFDQSFCAL 243 IEA++AE G ++ I R ++ AL I + + +FP L+ + F + Sbjct: 178 IEARLAEAGTEMAINRAIVLEALQIAI-DARPEGHFPKADLTLEGAAEAAALKGEDFRTI 236 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + GR+ D + RTL GPHR+DL V + A STG+QK +L+G+ LA Sbjct: 237 FDLLVDAYHSGRRRDIGAGRTLSGPHRTDLAVIHRPTAAPAGEASTGQQKALLIGLVLAS 296 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 A +S +G +P+LLLDE +AHLD D+R ALF +T +G Q ++TGT+ +F++ + A Sbjct: 297 ATALSAGGSGPSPLLLLDEAAAHLDPDRRAALFDELTVLGGQAWLTGTEAFLFEAFGDRA 356 Query: 363 KFMRISNHQA 372 + +R+ A Sbjct: 357 QRIRVDEGSA 366 >gi|297543502|ref|YP_003675804.1| DNA replication and repair protein RecF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841277|gb|ADH59793.1| DNA replication and repair protein RecF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 362 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 162/371 (43%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRN R+ F IF G N GK+N+LE+I LS GR FR + ++ Sbjct: 1 MYVKELFVDNFRNLEKQRIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKSTEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F + + + D I+ + D + +++N I+ + EL L Sbjct: 61 VRFGENYF---YVKAIICQENNDKKIEFGYKKD-GNKVIKVNSNKIKSISELLGQLLTVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF--DSSW 182 P I RR++LD + I+ + ++ + +++ RN+LL + Sbjct: 117 FSPEDLNIIKEGPSHRRKYLDSCISIIEKNYLYNLMQYNKILMNRNKLLKNIKEGKSKNI 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+ E G KI + R + L I +++ + + ++ + K Sbjct: 177 LEIFDDQLVEYGAKIIMVRQNYLKNLEINIKKFLLEISNEKAEIVYLNSVGLKDASDEET 236 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +K+ +KL +D T +GPHR D + + + + S G+Q+ + + L+ Sbjct: 237 VKKRLKEKLSKNIDLDLKYLTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTAALCLKLS 295 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++ T P+LLLD++ + LDE+++ + + G Q F+T T K L Sbjct: 296 EFEILKKATNEKPVLLLDDVMSELDENRKKYVLEKLK--GFQTFITHTTKR---DLKGDC 350 Query: 363 KFMRISNHQAL 373 + +ISN + Sbjct: 351 -YFKISNGVVI 360 >gi|229846049|ref|ZP_04466161.1| recombination protein F [Haemophilus influenzae 7P49H1] gi|229811053|gb|EEP46770.1| recombination protein F [Haemophilus influenzae 7P49H1] Length = 359 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 83/367 (22%), Positives = 158/367 (43%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + I ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGKIQESQHQWSIGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I E + P ++++++ + + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEI-EQTCRLFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|183597170|ref|ZP_02958663.1| hypothetical protein PROSTU_00413 [Providencia stuartii ATCC 25827] gi|188023484|gb|EDU61524.1| hypothetical protein PROSTU_00413 [Providencia stuartii ATCC 25827] Length = 364 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 152/371 (40%), Gaps = 16/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L +G NG GKT++LEAI L GR FR V Sbjct: 1 MILSRLLIRDFRNIEDADLALANGFNFLIGPNGSGKTSVLEAIYTLGHGRAFRSIQANRV 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R F ++ + + D VR I+ + EL K L + Sbjct: 61 IRHEQAQFILHGKLGHLDASRKALSLGLSKNREGDSKVR---IDGTDGHKIAELAKLLPM 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + P + +G RR F+D F +P D +RL++ RN L + Sbjct: 118 QLITPEGFTLLNGGPKYRRAFIDWGCFHNEPLFFSVWSDLKRLLKQRNAALRQ-VSRYEQ 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+A L +I+ R E I ++ I + Q + P LS++ + Sbjct: 177 IRHWDQQLAPLAEQISQWRSEYIAGIAENIEQTCQ-QFLPEFVLSVSFQRGWDKEI---- 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +Y++ L + D M T GPH++DL + + S G+ K+++ + LA Sbjct: 232 ---DYSELLERQFERDKMLTYTASGPHKADLRIRANGTPVEDML-SRGQLKLLMCALRLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNET 361 + +G + LLD+ ++ LD +R L + +Q+F++ T + V D ++ Sbjct: 288 QGEFFTQQSGQRCLYLLDDFASELDSGRRQLLAARLKATQAQVFVSAITPEQVKDMIDVN 347 Query: 362 AKFMRISNHQA 372 +K + + + Sbjct: 348 SKMFSVEHGKI 358 >gi|219847382|ref|YP_002461815.1| DNA replication and repair protein RecF [Chloroflexus aggregans DSM 9485] gi|254790467|sp|B8G3J6|RECF_CHLAD RecName: Full=DNA replication and repair protein recF gi|219541641|gb|ACL23379.1| DNA replication and repair protein RecF [Chloroflexus aggregans DSM 9485] Length = 392 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 97/392 (24%), Positives = 169/392 (43%), Gaps = 25/392 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRNY + + G N GKT++LEAI +L+ R R +S D+ Sbjct: 1 MYIHHLALRDFRNYRRQDVALSPTTILLYGPNAAGKTSLLEAIFYLATTRSPRLSSDRDL 60 Query: 65 TRI------GSPSFFSTFARVEGMEGLADISIKLETRDDRSV-------RCLQINDVVIR 111 R G+P F A VE G + I ++ R D + ++I+ R Sbjct: 61 VRWDAVGEAGAPPFARIAADVERRIGPVRLEILVQRRLDDGGQPLNGAQKLVRIDKRPAR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 +D L LR+ P+ + G ERRR+LD + +DP + R + +++++ RN Sbjct: 121 AID-LIGQLRVVLFTPTDVMLVDGPPAERRRYLDITLSQLDPHYVRTLAYYQKILLQRNS 179 Query: 172 LLTEGYFDSSW-------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 LL + ++A G + R+ + LS+L +K + Sbjct: 180 LLRAWREQRRLPRNVDAELGYWDQELAAAGGYLLAERLRAVVELSALAGSIYRKISGGEH 239 Query: 225 KLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 +L + D + +L E R + +TL GPHR DL+ + + Sbjct: 240 ELQIEYIASCDLDAARDAGSLAERLRLAFAAQRTDELARGQTLCGPHRDDLVFNVAGVNL 299 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 +GS G+Q+ + + + + A L+ G AP+LLLD++ + LD +R L ++ Sbjct: 300 G-RYGSRGQQRTIALALKIGEAELMQQRGGDAPVLLLDDVLSELDNRRRMHLLDLILRPQ 358 Query: 343 SQIFMTGTDKSVFDS-LNETAKFMRISNHQAL 373 Q +T T+ S F + A+ R+ + Q Sbjct: 359 QQTLLTATNLSDFSADFLAAARRFRVEDGQLF 390 >gi|212694619|ref|ZP_03302747.1| hypothetical protein BACDOR_04149 [Bacteroides dorei DSM 17855] gi|212663120|gb|EEB23694.1| hypothetical protein BACDOR_04149 [Bacteroides dorei DSM 17855] Length = 371 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N L F + F+G NG+GKTN+L+A+ +LS + + Sbjct: 1 MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G ++ L+ R + + N + + + + Sbjct: 61 IRH-EGDFFVIQGFYETNQGDPEEVYCGLKCRQKKQFKR---NKKEYSRLSDHIGFIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E D Sbjct: 117 MVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA G + R E I + + K++L A Sbjct: 177 MLVWEEMMAFAGEIVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAY--------ESHA 228 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + + RK D + +L G H+ DL++ D I GS G+ K L+ + LA Sbjct: 229 MNGNLLDIIKESRKRDRIMGYSLRGIHKDDLVMQLGDFPIKRE-GSQGQNKTYLIALKLA 287 Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360 + T + P+LLLD+I LD + + ++V D QIF+T T++ D + + Sbjct: 288 QFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLDKILK 347 Query: 361 T----AKFMRISNH 370 + + + Sbjct: 348 KIEREYRVFSVEDG 361 >gi|224023819|ref|ZP_03642185.1| hypothetical protein BACCOPRO_00535 [Bacteroides coprophilus DSM 18228] gi|224017041|gb|EEF75053.1| hypothetical protein BACCOPRO_00535 [Bacteroides coprophilus DSM 18228] Length = 374 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 156/374 (41%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F + +G NG+GKTN+++A+ +LS + + Sbjct: 1 MWLKRISILNYKNLEQVDLAFSRKMNCIIGRNGMGKTNLMDAVYYLSFCKSATNPVDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 FF E +G ++ L+ R + + N + + + + Sbjct: 61 ICHDQD-FFVVQGFYETDDGDPEEVYCGLKRRQKKQFKR---NKKEYTRLSDHIGLIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 117 MVSPADSLLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALLQRNTLLKAEVEPEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + E MA G + R E I+ + Y + ++SL A Sbjct: 177 MAVWEEAMAASGEVVYRKRREFIDEFIPVFQSYYSYISQGREQVSLAY--------ESHA 228 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + L R+ D + +L G H+ DLI+ D I GS G+ K L+ + LA Sbjct: 229 AEGNLLELLAASRQRDRIMGYSLKGVHKDDLIMQLGDFPIKRE-GSQGQNKTYLIALKLA 287 Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD---- 356 + T + PI+LLD+I LD + + ++V D QIF+T T++ D Sbjct: 288 QFEFLKRTGSHTTPIVLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLDKILK 347 Query: 357 SLNETAKFMRISNH 370 + K + N Sbjct: 348 KIEGDYKLFEVDNG 361 >gi|241889743|ref|ZP_04777041.1| DNA replication and repair protein RecF [Gemella haemolysans ATCC 10379] gi|241863365|gb|EER67749.1| DNA replication and repair protein RecF [Gemella haemolysans ATCC 10379] Length = 378 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 159/381 (41%), Gaps = 20/381 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L + FRNY S + + VG+N GKTNI+E+I L+ G+ +R S ++ Sbjct: 1 MKIKSLKLLYFRNYLSTNIEVHPSLNVLVGNNANGKTNIIESIFCLALGKSYRTKSDSEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + + D + + + + +I + + + L + Sbjct: 61 IMFGETATAMSC-----IVNKNDRELDIMLGINNKGKSAKIAGIKKTKLTDFVGELNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P +I G RR F++R + + + + ++ L++ RN L + + Sbjct: 116 FSPEDLQIVKGSPALRREFMNREFYQFSRIYHKYYLMYQHLLKQRNSYLKDMRKNPKDEM 175 Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 ++ ++ +Q+ ++ + I RV + +S L + + + L + Sbjct: 176 SLAYLETLTSQLVKVALYITKERVSFVRDISKLTYKNMLNISNGQETLKIKYKSSVLDAL 235 Query: 239 SFCAL------KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + + +E K + D M T IGP DL D + + S G+Q Sbjct: 236 NIAEINDESFTEENLTKVMMKKSFDDIMRGSTKIGPQHDDLEFYINDLDAKM-YASQGQQ 294 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD- 351 + +++ + LA + TG P+LLLD++ + LD++++ L + + Q F+T Sbjct: 295 RSIVLSLKLAEINFLKEKTGTYPVLLLDDVLSELDKNRQLKLLDAINE-NVQTFITTPSI 353 Query: 352 KSVFDSLNETAKFMRISNHQA 372 + + L + AK +I + Sbjct: 354 SDIKEDLLKKAKVFKIEDGNI 374 >gi|259418051|ref|ZP_05741970.1| recombination protein F [Silicibacter sp. TrichCH4B] gi|259346957|gb|EEW58771.1| recombination protein F [Silicibacter sp. TrichCH4B] Length = 365 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 133/370 (35%), Positives = 202/370 (54%), Gaps = 11/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S FR++ L DA+ G+NG GKTNILEA+S SPGRG RRAS AD+ Sbjct: 2 LALTSLFMSHFRSHLRADLHLDARPVAIHGNNGAGKTNILEAVSLFSPGRGIRRASAADM 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + ++ ++ E + R V+ D L + R+ W Sbjct: 62 ARRPEALGWKLKGLLQTTGPTFEVETSSEGGNARQVKI----DNKAASQVALGRIARVVW 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L+P+MDR++ + RRRFLDR+ + DP H + +E+ MR RNRLL + D++W Sbjct: 118 LIPAMDRLWIEGAEGRRRFLDRIALSFDPDHAEATLAYEKAMRERNRLLKDNVRDAAWYR 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +E QMAE G +I+ RV+ ++ L++ E + FP +L L +G+ +S Sbjct: 178 VLEGQMAEAGFRIHQTRVDAVSRLTAAQKE--AETAFPVAELQLI-QAEGEMPESV---- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ L GR D RTL+GPHRSDL+ Y K + STGEQK +LV + LA+A Sbjct: 231 DDLRAALDAGRARDLAVGRTLVGPHRSDLMGAYAAKGLPAKDCSTGEQKALLVSLILANA 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R + G APILLLDE++AHLD ++R AL+ + +G+Q +MTGT +F L + A+ Sbjct: 291 RALQAEEGSAPILLLDEVAAHLDGNRRAALYDEICALGTQAWMTGTGPELFQELGDRAQH 350 Query: 365 MRISNHQALC 374 + + + + Sbjct: 351 LEVVDQNGVS 360 >gi|289577269|ref|YP_003475896.1| DNA replication and repair protein RecF [Thermoanaerobacter italicus Ab9] gi|289526982|gb|ADD01334.1| DNA replication and repair protein RecF [Thermoanaerobacter italicus Ab9] Length = 362 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 162/371 (43%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRN R+ F IF G N GK+N+LE+I LS GR FR + ++ Sbjct: 1 MYVKELFVDNFRNLEKQRIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKSTEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F + + + D I+ + D + +++N I+ + EL L Sbjct: 61 VRFGENYF---YVKAIICQENNDKKIEFGYKKD-GNKVIKVNSNKIKSISELLGQLLTVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF--DSSW 182 P I RR++LD + I+ + ++ + +++ RN+LL + Sbjct: 117 FSPEDLNIIKEGPSHRRKYLDSCISIIEKNYLYNLMQYNKILMNRNKLLKNIKEGKSKNI 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+ E G KI + R + L I +++ + + ++ + K Sbjct: 177 LEIFDNQLVEYGAKIIMVRQNYLKNLEINIKKFLLEISNEKAEIVYLNSVGLKDASDEET 236 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +K+ +KL +D T +GPHR D + + + + S G+Q+ + + L+ Sbjct: 237 VKKRLKEKLSKNIDLDLKYLTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTAALCLKLS 295 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++ T P+LLLD++ + LDE+++ + + G Q F+T T K L Sbjct: 296 EFEILKKATNEKPVLLLDDVMSELDENRKKYVLEKLK--GFQTFITHTTKR---DLKGDC 350 Query: 363 KFMRISNHQAL 373 + +ISN + Sbjct: 351 -YFKISNGVVI 360 >gi|323705851|ref|ZP_08117423.1| DNA replication and repair protein RecF [Thermoanaerobacterium xylanolyticum LX-11] gi|323534847|gb|EGB24626.1| DNA replication and repair protein RecF [Thermoanaerobacterium xylanolyticum LX-11] Length = 362 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 166/374 (44%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + F+N +++F A + G N GK+N+LE I LS G+ FR + D+ Sbjct: 1 MYLKELIVDNFKNLKHQKVIFSAGTNVIYGSNAQGKSNLLECIRLLSIGKSFRNSKNRDM 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + V+G E + KL R ++N+ I+ + EL + + Sbjct: 61 VCFDVDYYYIKGVFDVDGEEVTVETGYKL-----NQNRFFKVNNNKIKNISELIGVILTT 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181 P I G RRR++D + I + +I + +++ RN++L + F Sbjct: 116 IFSPDDLNIVKGSPSLRRRYMDASISMIKRNYLYDIIQYNKVLANRNKVLKDVKFKKESA 175 Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 ++ Q++ G KI + R + IN L ++ + VQ + + L + K D Sbjct: 176 RLLDIMDEQLSFFGSKIIMYRRQYINNLDLIVKKIVQDISCEKVDLIYWNNVTDKID-DI 234 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++K+ KL R +D T GPHR D+ + I S G+Q+ + + + Sbjct: 235 KSIKDLLLNKLILNRDVDIKYGDTKYGPHRDDVKIFINGHDSRI-FASQGQQRTIALCLK 293 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA +I + G PILLLD++ + LDE++R + V G Q F+T T+K Sbjct: 294 LAEYEVIRSENGENPILLLDDVMSELDENRRKYILNKVE--GCQTFITHTEKKDVKG--- 348 Query: 361 TAKFMRISNHQALC 374 K+ IS+ + Sbjct: 349 -DKYFLISDGLIIS 361 >gi|302388603|ref|YP_003824424.1| DNA replication and repair protein RecF [Thermosediminibacter oceani DSM 16646] gi|302199231|gb|ADL06801.1| DNA replication and repair protein RecF [Thermosediminibacter oceani DSM 16646] Length = 367 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 158/373 (42%), Gaps = 12/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + +FRN+ + F + GDNG GKTN+LEAI FL R R DV Sbjct: 1 MHLTKIRLFDFRNFREAEVEFSGGLNVLYGDNGQGKTNLLEAIHFLCNLRPVRTTREQDV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G D + L D + VR V + EL + + Sbjct: 61 IAWDKTKAY-LKGVFDTSSGPVDRELLLVAGDRKKVREC---GVERHRLSELYWQIHAVF 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P + G ERRRFLD ++ + P++ R + ++ R + RNRLL + + + Sbjct: 117 FSPDDLSLVKGRPSERRRFLDLIIARLKPQYGRYLSEYNRALFHRNRLLKDLKKNRTLIT 176 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSF 240 + + Q++ LG I R L L+ +Y + ++ + S Sbjct: 177 ALDAWDEQLSSLGTVILKTRAAFTEKLFPLVRKYYLYFSREEREIEIKYAGSIVSTGTSP 236 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ E + L D S T +GPHR DL + + GS GEQ+ + + + Sbjct: 237 ESIHEAFLAALRKSLPQDLASGYTRVGPHRDDLQFLLGGRDLRY-FGSQGEQRTLSLSLK 295 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLN 359 A R+ TTG PILLLD+ + LD ++R + + Q+F+T D S + + + Sbjct: 296 FAERRVFFETTGVYPILLLDDAMSELDANRRRWILE--GEEPCQVFVTTVDLSAIPEDIL 353 Query: 360 ETAKFMRISNHQA 372 + ++ R+ Sbjct: 354 KKSRVYRVRAGSV 366 >gi|229843949|ref|ZP_04464090.1| recombination protein F [Haemophilus influenzae 6P18H1] gi|229812943|gb|EEP48631.1| recombination protein F [Haemophilus influenzae 6P18H1] Length = 359 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 158/367 (43%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ + + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|237711116|ref|ZP_04541597.1| DNA replication and repair protein RecF [Bacteroides sp. 9_1_42FAA] gi|229454960|gb|EEO60681.1| DNA replication and repair protein RecF [Bacteroides sp. 9_1_42FAA] Length = 371 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N L F + F+G NG+GKTN+L+A+ +LS + + Sbjct: 1 MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G ++ L+ R + + N + + + + Sbjct: 61 IRH-EGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKR---NKKEYSRLSDHIGFIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E D Sbjct: 117 MVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA G + R E I + + K++L A Sbjct: 177 MLVWEEMMAFAGEVVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAY--------ESHA 228 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + + RK D + +L G H+ DL++ D I GS G+ K L+ + LA Sbjct: 229 MNGNLLDIIKESRKRDRIMGYSLRGIHKDDLVMQLGDFPIKRE-GSQGQNKTYLIALKLA 287 Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360 + T + P+LLLD+I LD + + ++V D QIF+T T++ D + + Sbjct: 288 QFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLDKILK 347 Query: 361 T----AKFMRISNH 370 + + + Sbjct: 348 KIEREYRVFSVEDG 361 >gi|255746804|ref|ZP_05420750.1| DNA recombination and repair protein RecF [Vibrio cholera CIRS 101] gi|262155883|ref|ZP_06029005.1| DNA recombination and repair protein RecF [Vibrio cholerae INDRE 91/1] gi|262167102|ref|ZP_06034817.1| DNA recombination and repair protein RecF [Vibrio cholerae RC27] gi|255735561|gb|EET90960.1| DNA recombination and repair protein RecF [Vibrio cholera CIRS 101] gi|262024488|gb|EEY43174.1| DNA recombination and repair protein RecF [Vibrio cholerae RC27] gi|262030335|gb|EEY48977.1| DNA recombination and repair protein RecF [Vibrio cholerae INDRE 91/1] Length = 357 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 82/361 (22%), Positives = 153/361 (42%), Gaps = 12/361 (3%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 2 IQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNECSE 61 Query: 72 FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130 F E + + R ++I + + +L + L + + P Sbjct: 62 LFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQLIHPEGF 121 Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190 + + +RR F+D VF +P F+RL + RN LL S + ++ Sbjct: 122 ELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-LSYWDQEL 180 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 A L +I+ R +N L + E + + P + L + + DQ Y Sbjct: 181 ARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP-------YQSI 232 Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 L + D T GP+++DL + + S G+ K+++ + +A + ++ Sbjct: 233 LEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQGQHLTEL 291 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRISN 369 TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K +++ Sbjct: 292 TGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSKTFHVAH 351 Query: 370 H 370 Sbjct: 352 G 352 >gi|311897310|dbj|BAJ29718.1| putative DNA replication and repair protein RecF [Kitasatospora setae KM-6054] Length = 387 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 166/370 (44%), Gaps = 19/370 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + D T FVG NG GKTN++EA+ +++ R A+ A + Sbjct: 1 MHVAHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYVATLGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ + V G G ++LE ++ R +R D L LR Sbjct: 61 IRLGAERAVIRASVVAG--GGRATLVELELTAGKANRARLNRSDNVRPRDVL-GVLRTVL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 118 FAPEDLALVKGDPGERRRFLDELLTARTPRLAGVRSDYERVLKQRNALLKTAATARRAGG 177 Query: 177 --YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFL 232 D + + +A G ++ R++++ AL L+ E ++ + L Sbjct: 178 GKSADLATLEVWDGHLARAGAELTAFRIQLVAALQPLVAEAYRQLAPDGGDTVLEYRSSF 237 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +G+ S + + L R+ + TL+GPHR +L++ + S GE Sbjct: 238 EGELPTSREQAERQLLDALQSLRRQEIERGLTLVGPHRDELLLRLGPLPAK-GYASHGES 296 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTD 351 + + LA L+ G P+L+LD++ A LD +R+ L +V G Q+ +T Sbjct: 297 WSYALALRLASYELLRAE-GEEPVLVLDDVFAELDARRRDRLAELVAG-GEQVLVTAAVA 354 Query: 352 KSVFDSLNET 361 + V +L+ Sbjct: 355 EDVPKALHGA 364 >gi|265750702|ref|ZP_06086765.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_33FAA] gi|263237598|gb|EEZ23048.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_33FAA] Length = 371 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N L F + F+G NG+GKTN+L+A+ +LS + + Sbjct: 1 MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G ++ L+ R + + N + + + + Sbjct: 61 IRH-EGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKR---NKKEYSRLSDHIGFIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E D Sbjct: 117 MVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA G + R E I + + K++L A Sbjct: 177 MLVWEEMMAFAGEIVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAY--------ESHA 228 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + + RK D + +L G H+ DL++ D I GS G+ K L+ + LA Sbjct: 229 MNGNLLDIIKESRKRDRIMGYSLRGIHKDDLVMQLGDFPIKRE-GSQGQNKTYLIALKLA 287 Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360 + T + P+LLLD+I LD + + ++V D QIF+T T++ D + + Sbjct: 288 QFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLDKILK 347 Query: 361 T----AKFMRISNH 370 + + + Sbjct: 348 KIEREYRVFSVEDG 361 >gi|157959833|ref|YP_001499867.1| recombination protein F [Shewanella pealeana ATCC 700345] gi|189039643|sp|A8GYE5|RECF_SHEPA RecName: Full=DNA replication and repair protein recF gi|157844833|gb|ABV85332.1| DNA replication and repair protein RecF [Shewanella pealeana ATCC 700345] Length = 360 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 163/373 (43%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I FRN +S +L + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLSRLHIESFRNISSAQLQPGDGLNLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + FA +E + + I ++ D V+ IN ++ + L + L I Sbjct: 61 IKND-DDALTLFANMESGDEQSKIGLRRFRSGDIEVK---INGDKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DPR ++ R+++ RN+LL +G SS Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDPRFYAAWVNVRRILKQRNQLLRDGSPYSS-IQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + R + +++L+ L+ + E P + + ++ K Sbjct: 176 FWDKEFIRYAELVTDIRKQYVDSLNELLKGII-GEFLPQVDVKVSFTRGW-------DAK 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L D + T+ GPH++DL + A S G+ K+++ + +A Sbjct: 228 TEYAQLLETQYPRDLATGYTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--DSLNETA 362 +L+ I L+D++ + LD R L + + D G+Q+F+T + + + + Sbjct: 287 KLLKQQIDKKSIYLVDDLPSELDAKHRKLLLQQLADTGAQVFVTAIEPAAIVDSLITPPS 346 Query: 363 KFMRISNHQALCI 375 K + + I Sbjct: 347 KMFHVEQGRVTVI 359 >gi|163849398|ref|YP_001637442.1| DNA replication and repair protein RecF [Chloroflexus aurantiacus J-10-fl] gi|222527396|ref|YP_002571867.1| DNA replication and repair protein RecF [Chloroflexus sp. Y-400-fl] gi|189039618|sp|A9WDD4|RECF_CHLAA RecName: Full=DNA replication and repair protein recF gi|254790468|sp|B9LH68|RECF_CHLSY RecName: Full=DNA replication and repair protein recF gi|163670687|gb|ABY37053.1| DNA replication and repair protein RecF [Chloroflexus aurantiacus J-10-fl] gi|222451275|gb|ACM55541.1| DNA replication and repair protein RecF [Chloroflexus sp. Y-400-fl] Length = 392 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 99/392 (25%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRNY L L T+F G N GKT++LEAI +L+ R R +S ++ Sbjct: 1 MYVHHLFLRDFRNYRRLDLALAPATTLFYGPNAAGKTSLLEAIFYLATTRSPRLSSDREL 60 Query: 65 TRI------GSPSFFSTFARVEGMEGLADISIKLETRDD-------RSVRCLQINDVVIR 111 R G+P F A VE G + + ++ R D + + ++I+ R Sbjct: 61 VRWDAVGEAGTPPFARIAADVERRIGPVRLEVLVQRRADDDGQPLNGAQKLVRIDKRPAR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 +D L LR+ P+ + G ERRR+LD + +DP + R + +++++ RN Sbjct: 121 AID-LIGQLRVVLFTPTDLTLVDGPPAERRRYLDITLSQLDPHYVRTLAHYQKILLQRNS 179 Query: 172 LLTEGYFDS-------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 LL + + + ++A G + R+ I L+ L Q+ + Sbjct: 180 LLRAWREQRRVPRHVDAELAYWDQELAAAGGYLLAERLRAIVELNDLAGPLYQEMSGGED 239 Query: 225 KLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 +L + D + L E R + +TL GPHR DLI + Sbjct: 240 RLQIEYAASCDLGTARDAGGLAERLLLAFAAQRSDELARGQTLCGPHRDDLIFTVAGINL 299 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 +GS G+Q+ + + + + A L+ +G AP+LLLD++ + LD +R L ++ Sbjct: 300 G-RYGSRGQQRSIALALKIGEAGLMRRRSGEAPVLLLDDVLSELDAQRRAHLLALIHHPD 358 Query: 343 SQIFMTGTDKSVFDS-LNETAKFMRISNHQAL 373 Q +T TD S F + + R+ + Q Sbjct: 359 QQTLLTATDLSDFSADFLAAVRRYRVEDGQVF 390 >gi|329770366|ref|ZP_08261748.1| hypothetical protein HMPREF0433_01512 [Gemella sanguinis M325] gi|328836489|gb|EGF86149.1| hypothetical protein HMPREF0433_01512 [Gemella sanguinis M325] Length = 378 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 170/381 (44%), Gaps = 20/381 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L + FRNY SL + + VGDN GKTNI+E+I L+ G+ +R S ++ Sbjct: 1 MKIKTLKLLYFRNYLSLNIEVHPSLNVLVGDNANGKTNIIESIFCLALGKSYRTKSDSEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + +E + + DI + + + + +I + + + L + Sbjct: 61 IMFGEEAAAMSCV-LEKNDKMLDIMLGI----NNKGKSAKIAGLKKTKLTDFVGELNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P +I G RR F++R + + + + ++ L++ RN L + + Sbjct: 116 FSPEDLQIIKGSPSLRREFINREFYQFSRIYHKYYLLYQHLLKQRNSYLKDMRKNPKDEF 175 Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FL 232 ++ +I +Q+ ++ + I R I LS L + + + L L L Sbjct: 176 SLAYLETITSQLVKIAMYITKERSLFIKNLSKLAQKNMLNISNHKEDLELKYKSSILDML 235 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + + +E KK+ D D M T IGPH+ DL + +K + S G+Q Sbjct: 236 NINSVEDKDFNEENIIKKIMDKSYDDIMRGSTRIGPHQDDLEF-FINKLDAKMYASQGQQ 294 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD- 351 + +++ + L+ + + TG PILLLD++ + LD +++ L + + Q F+T Sbjct: 295 RSIVLSLKLSEIDYLKSKTGSYPILLLDDVLSELDRNRQLKLLDAINE-NVQTFITTPSI 353 Query: 352 KSVFDSLNETAKFMRISNHQA 372 + + L + AK +I+N Sbjct: 354 SDIKEDLLKKAKVFKINNGTI 374 >gi|319897497|ref|YP_004135694.1| DNA replication and repair protein recf [Haemophilus influenzae F3031] gi|317433003|emb|CBY81374.1| DNA replication and repair protein RecF [Haemophilus influenzae F3031] Length = 359 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 157/367 (42%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPGFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L +++ R E AL I + Q P ++++++ + + Sbjct: 176 IWDVELTKLAHQVSQWRTEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|300725946|ref|ZP_07059408.1| RecF protein [Prevotella bryantii B14] gi|299776797|gb|EFI73345.1| RecF protein [Prevotella bryantii B14] Length = 368 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 157/375 (41%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + +++ ++N + LV + F+G NGVGKTN+L+A+ +LS + Sbjct: 1 MVLNNISVINYKNIRTADLVLSPKINCFIGQNGVGKTNLLDAVYYLSFCHSAYNPMDSQC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FF G ++ R + + + N + + + + + + Sbjct: 61 ITHDED-FFVLEGNYSTDNGDSENIYCGMKRGTK--KHFKRNKKEYKRLSQHIGLIPLIF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + PS + G S RR+ +D ++ D + + ++ + ++ RN LL E D S Sbjct: 118 ISPSDSFLIEGGSEGRRKLMDVVISQYDNTYMDALNNYNKALQQRNALLKMEDEPDVSLL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E +MAE G I R + +N L + E +K + +SL G+ Sbjct: 178 DIWEHEMAEQGTLIYQKRDDFVNKLVPVFQEIYRKISGDRETVSLRYVSHGQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + R D +L G HR DL + D + GS G+ K ++ + LA Sbjct: 230 RGDLYDVISRDRFKDRAVGYSLHGVHRDDLEMLIGDYQMKRE-GSQGQNKTFVLALKLAQ 288 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSLNET 361 + +G P+LLLD+I LD D+ + +V+ QIF+T T++ D + + Sbjct: 289 FDFLKRTASGTTPLLLLDDIFDKLDADRVEQIVNLVSSNNYGQIFITDTNRDHLDRILKH 348 Query: 362 A----KFMRISNHQA 372 + K + N + Sbjct: 349 SNNVYKIFSVENGEI 363 >gi|163745037|ref|ZP_02152397.1| recombination protein F [Oceanibulbus indolifex HEL-45] gi|161381855|gb|EDQ06264.1| recombination protein F [Oceanibulbus indolifex HEL-45] Length = 365 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 127/372 (34%), Positives = 196/372 (52%), Gaps = 14/372 (3%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 ++ + L++S FR++ + D + G NG GKTNI+EAIS LSPGRG RR S Sbjct: 2 TQLYLSNLSLSHFRSHRRAVIDVDVRPVALYGPNGAGKTNIIEAISLLSPGRGLRRTSAQ 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D+ R + + G L +I + E R + D L + R+ Sbjct: 62 DMARRPEALGWKMSGLLHGPSVLHEIEVWSEAGAARQTKI----DGKAAAQTALGRVARV 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL+P+MDR++ + RRRFLDR+ ++ P H + +E+ MR RNRLL + + +W Sbjct: 118 LWLIPAMDRLWIEGAEGRRRFLDRVTLSMLPDHAELSLSYEKAMRERNRLLKDMVREPAW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 +++EA+MAE G +I+ R++ + + + FP L L + Sbjct: 178 YAALEARMAETGAQIHANRLQ--ALAALEAAQEEAQTAFPVATLELQCAMPSDV------ 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E + L D R D + RTLIGPHR+DL Y K + STGEQK +LV + LA Sbjct: 230 --EALRRALSDNRMRDLSAGRTLIGPHRADLEGTYAAKGVAARDCSTGEQKALLVSLILA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +AR I+ G P+LLLDE++AHLD +R AL+ + +G+Q +MTGT +F+SL + A Sbjct: 288 NARAIAADFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFESLGDRA 347 Query: 363 KFMRISNHQALC 374 +++ ++ L Sbjct: 348 QYVEVTEEDGLS 359 >gi|251791866|ref|YP_003006586.1| recombination protein F [Aggregatibacter aphrophilus NJ8700] gi|247533253|gb|ACS96499.1| DNA replication and repair protein RecF [Aggregatibacter aphrophilus NJ8700] Length = 358 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 161/372 (43%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN ++ L +D VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLTVENFRNLQAVDLEWDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDQP-HFTLFGQIQEQQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F RL++ RN L + Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVSFYNLWASLSRLLKQRNAAL-QQVSSYQQMK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L ++++ R E AL I E + P + +S++ + DQ+ Sbjct: 176 IWDVELVKLAEQVSLLRAEYAQALQPEI-EQTCRLFLPELDISVSFHQGWEKDQN----- 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 230 --YAELLARNFERDRTLGYTVSGPQKADFRFKANGLPVEDIL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363 + I L+D+ ++ LD+ KR+ L + + GSQ+F+T ++ + + + + Sbjct: 287 EHLMQQKQRHCIFLIDDFASELDQTKRSLLAERLQNSGSQVFVTAITQNQLNEMQPKKHR 346 Query: 364 FMRISNHQALCI 375 +I + Q + Sbjct: 347 TFKIESGQIESL 358 >gi|239980784|ref|ZP_04703308.1| recombination protein F [Streptomyces albus J1074] gi|291452642|ref|ZP_06592032.1| recombination protein F [Streptomyces albus J1074] gi|291355591|gb|EFE82493.1| recombination protein F [Streptomyces albus J1074] Length = 377 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 162/386 (41%), Gaps = 24/386 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA L D T FVG NG GKTN++EA+ +L+ R +S + Sbjct: 1 MHVSHLSLADFRSYARADLALDPGVTAFVGPNGQGKTNLVEAVGYLATLSSHRVSSDQPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A G +I+LE ++ R +IN ++ +R Sbjct: 61 VRAGAERAVIRAAV---EHGERRRTIELELNPGKANRA-RINRSSQVKPRDVLGIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD +V A PR D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYDRVLKQRNTLLKTAALARRHGG 176 Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233 D S + +A G ++ R+++I L L + ++ + L Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLIATLQPLTDKAYEQLAPGGGPVHLEYKPSAA 236 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G + L + L + RK + TL+GPHR ++ + S GE Sbjct: 237 GTG-TTREELYGSLLEALAEVRKQEIERGVTLVGPHRD-DLLLRLGDLPAKGYASHGESW 294 Query: 294 VVLVGIFLAHARLISNTTGF---APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349 + + + LA L+ G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 295 SLALALRLASYDLLRTEGGEATGEPVLVLDDVFAELDARRRERLAELVA-PGEQVLVTAA 353 Query: 350 TDKSVFDSLNETAKFMRISNHQALCI 375 D+ V L R++ + + Sbjct: 354 VDEDVPPVL--AGARFRVTRGEVARV 377 >gi|237727469|ref|ZP_04557950.1| DNA replication and repair protein recF [Bacteroides sp. D4] gi|229434325|gb|EEO44402.1| DNA replication and repair protein recF [Bacteroides dorei 5_1_36/D4] Length = 371 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N L F + F+G NG+GKTN+L+A+ +LS + + Sbjct: 1 MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSAINPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G ++ L+ R + + N + + + + Sbjct: 61 IRH-EGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKR---NKKEYSRLSDHIGFIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E D Sbjct: 117 MVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA G + R E I + + K++L A Sbjct: 177 MLVWEEMMAFAGEVVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAY--------ESHA 228 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + + RK D + +L G H+ DL++ D I GS G+ K L+ + LA Sbjct: 229 MNGNLLDIIKESRKRDRIMGYSLRGIHKDDLVMQLGDFPIKRE-GSQGQNKTYLIALKLA 287 Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360 + T + P+LLLD+I LD + + ++V D QIF+T T++ D + + Sbjct: 288 QFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLDKILK 347 Query: 361 T----AKFMRISNH 370 + + + Sbjct: 348 KIEREYRVFSVEDG 361 >gi|301154705|emb|CBW14168.1| gap repair protein [Haemophilus parainfluenzae T3T1] Length = 360 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 81/369 (21%), Positives = 157/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLIVEKFRNLNAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + +IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTIAKINGEDGNKIADLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L++ S+ Sbjct: 117 ITPEGLTLLNGGPSFRRAFLDWGLFHHHNSFHSSWVALNRLLKQRNAALSQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ + + Sbjct: 176 IWDIELAKLAHQVSDWRAEYAEALRPEIEKTCQ-LFLPELEITVSFHQGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EY + L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 229 -EYGELLAQNFERDKAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T + + K Sbjct: 287 EHLMIQKQRHCIFLIDDFASELDQHKRALLAERLQQSGSQVFVTAITQGQLKEMQVGKGK 346 Query: 364 FMRISNHQA 372 ++ + Sbjct: 347 LFQVDTGKI 355 >gi|309811297|ref|ZP_07705084.1| DNA replication and repair protein RecF [Dermacoccus sp. Ellin185] gi|308434604|gb|EFP58449.1| DNA replication and repair protein RecF [Dermacoccus sp. Ellin185] Length = 440 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 87/400 (21%), Positives = 163/400 (40%), Gaps = 40/400 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L++ +FR+Y + T FVG NG GKTN++EA +L+ R ++ A + Sbjct: 1 MRLRHLSLRDFRSYTEAEVELADGVTTFVGLNGQGKTNLVEAAGYLATLGSHRVSTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F A V + ++LE R+ R +I ++ LR Sbjct: 61 VRFGAERAFVRAAVV---RDSHETVLELEIIPGRANRA-RIGRAAAGRPRDILGSLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D++++++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDDLLVARQPRWAGARSDYDKILKQRNALLRSAQSALKKGA 176 Query: 178 -----------FDSSWCSS---IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + +A +G + AR+ ++ L+ + + + + Sbjct: 177 RGARLSADQEVSRETALDTLVEWNTHLASVGSALVYARLRLLKDLAPYVAQAYDEVSAGR 236 Query: 224 --IKLSLTGFLDGKFD--------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 +L+ L L++ + + R + TL+GPHR D+ Sbjct: 237 SDARLAYVSSLPESTAARIASGEVPERDELEKAFHEAFELQRTREIERGVTLVGPHRDDV 296 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 + D + S GE + + LA L+ + G P+L+LD++ A LD +R Sbjct: 297 TLTLGDLPAK-GYASHGESWSFALALRLAAFHLLRHDLGTDPVLVLDDVFAELDAGRRER 355 Query: 334 LFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372 L +V+D Q+ +T ++ V L + + ++ Sbjct: 356 LADMVSDAE-QVLITAAVEEDVPARL--SGQVFHVTKGHV 392 >gi|212712614|ref|ZP_03320742.1| hypothetical protein PROVALCAL_03709 [Providencia alcalifaciens DSM 30120] gi|212684830|gb|EEB44358.1| hypothetical protein PROVALCAL_03709 [Providencia alcalifaciens DSM 30120] Length = 364 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 152/373 (40%), Gaps = 20/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L +G NG GKT+ILEAI L GR FR V Sbjct: 1 MILSRLLIRDFRNIEDADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIRVVDELNKHL 120 R F + G G D K+ + R ++I+ + EL K L Sbjct: 61 IRHDQEQFI-----LHGKLGHPDTERKVLSLGLSKNREGDSKVRIDGTDGHKIAELAKLL 115 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + + P + +G RR F+D F + D +RL++ RN L + Sbjct: 116 PMQLITPEGFTLLNGGPKYRRAFIDWGCFHNEALFFSTWSDLKRLLKQRNAALRQ-VTRY 174 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+A + +I+ R E I ++ I E K+ P LS++ + Sbjct: 175 EQIRHWDQQLAPISEQISQWRGEYIAGIAENI-EQTCKQFLPEFSLSVSFQRGWDKEI-- 231 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +Y+++L + D T GPH++DL + + S G+ K+++ + Sbjct: 232 -----DYSEQLERQFERDRALTYTSSGPHKADLRIRANGIPVEDML-SRGQLKLLMCALR 285 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLN 359 LA + +G + LLD+ ++ LD +R L + +Q+F++ T V D ++ Sbjct: 286 LAQGEYFTQQSGQQCLYLLDDFASELDSGRRQLLAARLKATQAQVFVSAITPAQVNDMID 345 Query: 360 ETAKFMRISNHQA 372 +K + + Sbjct: 346 ANSKMFSVEQGKI 358 >gi|84684519|ref|ZP_01012420.1| recombination protein F [Maritimibacter alkaliphilus HTCC2654] gi|84667498|gb|EAQ13967.1| recombination protein F [Rhodobacterales bacterium HTCC2654] Length = 371 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 200/371 (53%), Gaps = 9/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +S FR++ L DA+ G NG GKTNILEA+S +SPGRG R AS D+ Sbjct: 4 LYLRELTLSHFRSHRRAVLSLDARPIAIFGRNGAGKTNILEAVSLMSPGRGLRGASAEDM 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + ++ + + ++ E R + I+ V L + R++W Sbjct: 64 ARRPESVGWKLTGVLQSLHQVHEVETWAEPGGS---RNVTIDGKTAAQVA-LGRISRVTW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP MDR++ + RR+FLDRM + +P H ++ +E+ MR RNRLL +G+ D+ W Sbjct: 120 LVPVMDRLWMEGADGRRKFLDRMAMSFEPGHGEAVLTYEKAMRDRNRLLKDGHRDAHWYG 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++EAQMA+ G I R + + + + FP +L L L + ++ + Sbjct: 180 ALEAQMAKAGAAIQENRRRTVALIVG--AQMSAQTAFPAAELQL---LHAEGAETGPEGE 234 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E A+ + R D M+ RTL+GPHR+DL Y +KA+ STGEQK +LV + LAH Sbjct: 235 AELAEAYAESRPRDLMAGRTLVGPHRADLAATYAEKAMPARECSTGEQKALLVSLILAHG 294 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G P+LLLDE+SAHLD D+R AL+ + +G+Q F+TGT +F L A Sbjct: 295 RALAQDFGAPPMLLLDEVSAHLDADRRAALYDEIVALGAQAFLTGTGPELFTELGARAMH 354 Query: 365 MRISNHQALCI 375 + + + + Sbjct: 355 IEVRDEAGQSL 365 >gi|293376414|ref|ZP_06622648.1| DNA replication and repair protein RecF [Turicibacter sanguinis PC909] gi|325839307|ref|ZP_08166773.1| DNA replication and repair protein RecF [Turicibacter sp. HGF1] gi|292644970|gb|EFF63046.1| DNA replication and repair protein RecF [Turicibacter sanguinis PC909] gi|325490589|gb|EGC92904.1| DNA replication and repair protein RecF [Turicibacter sp. HGF1] Length = 377 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 86/372 (23%), Positives = 155/372 (41%), Gaps = 14/372 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +FRNY + + F I +G+N GKT+++E++ LS + R + + + Sbjct: 1 MFIKKLVVKQFRNYENACVEFKKNINIIIGNNAQGKTSLIESMYVLSTTKSHRTSKDSQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ FAR+E L + + N +V + + + L + Sbjct: 61 ILFGTD-----FARIEADIKREQDDFSLSLVLSKKGKKASYNGIVQKKLSDYVGKLIVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P + G RRRF+D + + P + + + +L++ RN LL + + Sbjct: 116 FAPEDLSLVKGGPQYRRRFMDMEIGQLSPSYLFHLGQYSKLLKQRNELLKQLRINRQNEL 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 I Q+ V + R+E + L S + + + ++ L K + Sbjct: 176 LLDVITEQLVPHAVYVLNKRIEFLKQLESFCKDVHGEISKQKEEIQLDYINSFK---NIE 232 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +E +K + D T +GPHR D V T GS G+Q+ + + L Sbjct: 233 LDEESILQKYRELYDQDIQLGSTNLGPHRDDFSVSINGIN-THQFGSQGQQRTASLSMKL 291 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNE 360 A LI + PILLLD++ + LD+ ++ L + + Q F+T T+ D + E Sbjct: 292 AEIELIYSVLHEYPILLLDDVLSELDDTRQTQLLNTIKNK-VQTFITTTNIDGIDDEVIE 350 Query: 361 TAKFMRISNHQA 372 A I+N + Sbjct: 351 LADIFTINNAEI 362 >gi|325577773|ref|ZP_08148048.1| recombination protein F [Haemophilus parainfluenzae ATCC 33392] gi|325160518|gb|EGC72644.1| recombination protein F [Haemophilus parainfluenzae ATCC 33392] Length = 360 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 157/369 (42%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLIVEKFRNLNAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + +IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWAVGLQ---KLRQGNTIAKINGEDGNKIADLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L++ S Sbjct: 117 ITPEGLTLLNGGPSFRRAFLDWGLFHHHNSFHSSWVALNRLLKQRNAALSQNQP-YSTIK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ + + Sbjct: 176 IWDIELAKLAHQVSDWRAEYAEALRPEIEKTCQ-LFLPELEITVSFHQGWEKET------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EY + L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 229 -EYGELLAQNFERDKAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T + + E K Sbjct: 287 EHLMIQKQRHCIFLIDDFASELDQHKRALLAERLQQSGSQVFVTAITQGQLKEMQVEKGK 346 Query: 364 FMRISNHQA 372 ++ + Sbjct: 347 LFQVDTGKI 355 >gi|297184290|gb|ADI20407.1| recombinational DNA repair ATPase (recf pathway) [uncultured alpha proteobacterium EB080_L43F08] Length = 364 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 135/368 (36%), Positives = 205/368 (55%), Gaps = 12/368 (3%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +RI + L IS FR+Y ++ ++ G NG GKTNILEA+S LSPGRG RR+ Sbjct: 2 SRIAVTNLKISHFRSYKNVEILTSGCPVALFGSNGAGKTNILEALSLLSPGRGLRRSRVD 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ R + A ++ + + +I RSVR D + L + RI Sbjct: 62 EMERKPEGIGWKISATLQSLGQIHEIETIYSGDGSRSVRI----DGKVTTQTALGRIARI 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WLVP MDR++ + RRRFLDR+ + +P H + +D+ER MR RN++L EG D +W Sbjct: 118 VWLVPVMDRLWVDGAEGRRRFLDRLSMSFEPSHAQYTLDYERAMRERNKMLKEGINDPAW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S++E+QMAE G KI R+ I+ + + + +FP +L L G + Sbjct: 178 YSAVESQMAESGRKIEQNRLYTIDRIME--AQTNVQTSFPTAQLGLVG------ANNEAI 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + ++ + R+ D + RTL+GPHR DL Y K STGEQK +LV + LA Sbjct: 230 IVDDLKDAFANNRRADLFAGRTLVGPHRDDLTAMYSAKETAAKLCSTGEQKALLVSLILA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + R +S G APILLLDE+SAHLD +++NAL+ + +G+Q +MTGT K +F++ + A Sbjct: 290 NGRALSQDFGSAPILLLDEVSAHLDIERQNALYEEIISLGAQAWMTGTGKELFEAFGDRA 349 Query: 363 KFMRISNH 370 +F+ ++ Sbjct: 350 QFLEVNEA 357 >gi|114769642|ref|ZP_01447252.1| recombination protein F [alpha proteobacterium HTCC2255] gi|114549347|gb|EAU52229.1| recombination protein F [alpha proteobacterium HTCC2255] Length = 364 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 136/368 (36%), Positives = 205/368 (55%), Gaps = 12/368 (3%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +RI + L IS FR+Y ++ ++ G NG GKTNILEA+S LSPGRG RR+ Sbjct: 2 SRIAVTNLKISHFRSYKNVEILTSGCPVALFGSNGAGKTNILEALSLLSPGRGLRRSRVD 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ R + A ++ + + +I RSVR D + L + RI Sbjct: 62 EMERKPEGIGWKISATLQSLGQIHEIETIYSGDGSRSVRI----DGKVTTQTALGRIARI 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WLVP MDR++ + RRRFLDR+ + +P H + +D+ER MR RN++L EG D +W Sbjct: 118 VWLVPVMDRLWVDGAEGRRRFLDRLSMSFEPSHAQYTLDYERAMRERNKMLKEGINDPAW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S++E+QMAE G KI R+ I+ + + + +FP +L L G + Sbjct: 178 YSAVESQMAESGRKIEQNRLYTIDRIME--AQTNVQTSFPTAQLGLVG------ANNEAI 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + ++ + R+ D + RTLIGPHR DL Y K STGEQK +LV + LA Sbjct: 230 IVDDLKDAFANNRRADLFAGRTLIGPHRDDLTAMYSAKETAAKLCSTGEQKALLVSLILA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + R +S G APILLLDE+SAHLD +++NAL+ + +G+Q +MTGT K +F++ + A Sbjct: 290 NGRALSQDFGSAPILLLDEVSAHLDIERQNALYEEIISLGAQAWMTGTGKELFEAFGDRA 349 Query: 363 KFMRISNH 370 +F+ ++ Sbjct: 350 QFLEVNEA 357 >gi|281424150|ref|ZP_06255063.1| RecF protein [Prevotella oris F0302] gi|281401711|gb|EFB32542.1| RecF protein [Prevotella oris F0302] Length = 366 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 147/374 (39%), Gaps = 18/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I ++N + + F+G NGVGKTN+L+A+ +LS R + V Sbjct: 1 MILNRLSILNYKNIREATISLSPKLNCFIGSNGVGKTNVLDAVHYLSFCRSAFNPIDSQV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F EG + R + + + N R + + + + + Sbjct: 61 IMHNQD-FLVLEGNYTTDEGEEEQIYCGMKRGTK--KHFKRNKKEYRRLSQHIGLIPLVF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 PS + G S ERRR LD ++ D + + + + ++ RN LL E D + Sbjct: 118 ASPSDSVLIEGGSEERRRLLDLVISQYDHAYIEALSAYNKALQQRNALLKMEDEPDKALL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E QMA G I R + L + + H +SL G+ Sbjct: 178 EIWEEQMAMNGEVIYQKRDAFVKRLVPVFQNIYSHISGDHETVSLNYISHGQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + R D +L G HR DL + + GS G+ K + + LA Sbjct: 230 RGSLLDTIQRDRYKDRAVGYSLHGVHRDDLEMLLDGYQMKRE-GSQGQHKTYALALKLAQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSLNETA 362 + +T+ P+LLLD+I LD D+ + ++V G QIF+T T++ D + Sbjct: 289 FDFLRHTSNSTPLLLLDDIFDKLDADRVEQIVQLVGGEGFGQIFITDTNRDHLDRILANG 348 Query: 363 KF----MRISNHQA 372 F ++ + Sbjct: 349 DFDYRLFSVNKGEI 362 >gi|169351629|ref|ZP_02868567.1| hypothetical protein CLOSPI_02410 [Clostridium spiroforme DSM 1552] gi|169291851|gb|EDS73984.1| hypothetical protein CLOSPI_02410 [Clostridium spiroforme DSM 1552] Length = 365 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 94/375 (25%), Positives = 167/375 (44%), Gaps = 21/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K LN+ FRNY+ + F I +G+NG GKTN++EAI LS G+ FR + Sbjct: 1 MIVKSLNLYNFRNYSHFVIDFSQDINILIGNNGQGKTNLIEAIYLLSVGKSFRSHVNKQM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FAR++G LE + + +I++ I + E L + Sbjct: 61 IMFDNE-----FARIKGKVISNSKQRNLEIILGSNFKNAKIDNQDIHKISEFVGLLNVVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180 +P + G RRRF+D + I P + + + L++ RN+ L + Sbjct: 116 FIPDDLYLVKGNPSNRRRFIDLEISKISPIYVFNLSKYSNLLKERNKYLKILNKKNSSGD 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFD 237 + ++ Q+++L V++ R++ I+ L + QK + IKL + FL + Sbjct: 176 EYLEVLDEQLSKLQVELIKKRLQFISRLDQKVSLIYQKIAQKDNEAIKLRYSCFLKDDLN 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 E + D ++ IG H+ DL + D + S G+Q+ V++ Sbjct: 236 ------YENILNLYKKNHRRDIKYMQSHIGIHKDDLKIYMND-NDACLYASQGQQRTVVL 288 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + +A LI G P+LLLD++ + LD+ ++N L I+ Q F+T T + Sbjct: 289 SLKIALIELIKEEIGEYPVLLLDDVLSELDKTRKNMLLDILNQK-IQTFITTTSIDDINH 347 Query: 358 -LNETAKFMRISNHQ 371 + E AK + I + + Sbjct: 348 QIIERAKKIYIESGK 362 >gi|149375633|ref|ZP_01893402.1| recombination protein F [Marinobacter algicola DG893] gi|149360035|gb|EDM48490.1| recombination protein F [Marinobacter algicola DG893] Length = 379 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 89/380 (23%), Positives = 164/380 (43%), Gaps = 22/380 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L FRN + + F + G NG GKT++LEAI +L GR FR + + V Sbjct: 1 MALVKLQSENFRNLSPAPVSFSPSINLLYGANGSGKTSVLEAIGYLGLGRSFRVSRHQAV 60 Query: 65 TRIGSPSFFSTFARVEGMEG--------LADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 G +GM G + + + L+++ +R + L Sbjct: 61 VSHGQHKLTVFGGLDQGMSGAEQKPSSGELNHRVGISRDVTAKETTLRVDGEAVRNLSSL 120 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 +HL +S + P + I +G +RR+FLD VF ++P +R+ RN++L G Sbjct: 121 ARHLPVSVIDPGVFDIVAGGPGKRRQFLDWAVFHVEPSFASVWQQCQRVTSQRNQILRNG 180 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGK 235 D + ++Q EL ++ AR E + + + + P + L L ++ Sbjct: 181 RIDDALMKVWDSQYTELAERLTQARNETFRLFTKAFHSLLGEIDAPWVDGLKLDYYVGWD 240 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 QS + L R+ + TL GP+R+D+ + Y + + S G+QK + Sbjct: 241 ASQSLVEV-------LRSHREQEQKMGHTLYGPNRADIRLRYQGRPVAETF-SRGQQKTL 292 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 ++ + +A ++S+ G LLD+I+A LD R L + + ++ Q+F+T + Sbjct: 293 VILMKIAQGMVLSD-LGKQVTFLLDDINAELDVVHRAMLAQKLHELRCQVFVTSIEAPRP 351 Query: 356 DSL----NETAKFMRISNHQ 371 D L + + + + Sbjct: 352 DELWRHTMPEYRLFHVEHGK 371 >gi|302535569|ref|ZP_07287911.1| recombination protein F [Streptomyces sp. C] gi|302444464|gb|EFL16280.1| recombination protein F [Streptomyces sp. C] Length = 378 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 160/384 (41%), Gaps = 25/384 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + T FVG NG GKTN++EAI +L+ R +S A + Sbjct: 1 MHVSHLSLADFRSYARAEVPLAPGVTAFVGPNGQGKTNLVEAIGYLATLGSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A +G ++LE R+ R +R D L +R Sbjct: 61 VRMGADRAVIRAAVTQGERQQL---VELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 P + G ERRRFLD +V A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGG 176 Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233 D S + +A G ++ R+++I L L + ++ + L+ Sbjct: 177 RSMDLSTLDVWDQHLARAGAELLAQRLDLIATLLPLADKAYEQLAPGGGPLALAYKSSAG 236 Query: 234 GKFDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 D +EE + L RK + TL GPHR ++ + S Sbjct: 237 DPVDNGAARTREELYEVLLATLSQVRKQEIERGVTLAGPHRD-DLLLRLGDLPAKGYASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT- 348 GE + + LA L+ + G P+L+LD++ A LD +R L +V G Q+ +T Sbjct: 296 GESWSYALALRLASYELLRSE-GAEPVLILDDVFAELDARRRERLAELVAG-GEQVLVTA 353 Query: 349 GTDKSVFDSLNETAKFMRISNHQA 372 D V L T +S + Sbjct: 354 AVDDDVPGVL--TGTRFGVSGGEV 375 >gi|254393576|ref|ZP_05008709.1| RecF [Streptomyces clavuligerus ATCC 27064] gi|294813743|ref|ZP_06772386.1| DNA replication and repair protein recF [Streptomyces clavuligerus ATCC 27064] gi|326442164|ref|ZP_08216898.1| recombination protein F [Streptomyces clavuligerus ATCC 27064] gi|197707196|gb|EDY53008.1| RecF [Streptomyces clavuligerus ATCC 27064] gi|294326342|gb|EFG07985.1| DNA replication and repair protein recF [Streptomyces clavuligerus ATCC 27064] Length = 381 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 95/390 (24%), Positives = 164/390 (42%), Gaps = 28/390 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + + + FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYARVEVPLGPGVSSFVGANGQGKTNLVEAVGYLATLASHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A +G I+LE R+ R +R D L +R Sbjct: 61 VRAGAQRAVIRAAVTQGDRSQL---IELELNPGRANRARINRSSQVRPRDAL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 P + G +RRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGDRRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGF 231 D S + +A +G ++ R++++ L L + + ++L Sbjct: 177 SRSGADLSTLDVWDQHLARVGAELLARRLDLVATLRPLADKAYESLAPGGGPLELEYRSS 236 Query: 232 LDG-----KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 + L + L + RK + TL+GPHR +L++ + + Sbjct: 237 AGATAPPEDGAEGREELYGLLLEALGEARKQEIERGVTLVGPHRDELLLKLGELPAK-GY 295 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + + LA L+ + G P+L+LD++ A LD +R L +V G Q+ Sbjct: 296 ASHGESWSYALALRLASYELLRSE-GHEPVLVLDDVFAELDAKRRERLAELVA-PGEQVL 353 Query: 347 MT-GTDKSVFDSLNETAKFMRISNHQALCI 375 +T D V L + +S + + Sbjct: 354 VTAAVDDDVPQVL--SGARYAVSGGEVTRV 381 >gi|317495091|ref|ZP_07953462.1| DNA replication and repair protein RecF [Gemella moribillum M424] gi|316914798|gb|EFV36273.1| DNA replication and repair protein RecF [Gemella moribillum M424] Length = 380 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 160/381 (41%), Gaps = 20/381 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI+ L + FRNY SL + IF GDN GKTNI+E+I LS G+ +R S + Sbjct: 1 MKIRELKLLYFRNYTSLNIATHPSLNIFFGDNANGKTNIVESIFCLSLGKSYRTKSDTEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + + ++ + + +I + + E L + Sbjct: 61 IMFGEDAAAMSCVL-----NKNNKNLDIMLGISNKGKSAKIAGIKKNKLTEFVGELNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P +I G RR F++R + + + + ++ L++ RN L + + Sbjct: 116 FSPEDLQIVKGSPSLRREFINREFYQFSRIYHKYHLMYQHLLKQRNSYLKDMKKNPKDEI 175 Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 ++ ++ +Q+ ++ + I RV + ++ L E + + + L + Sbjct: 176 SLTYLETLTSQLVKIAMYITRERVSFVKDIAKLAYENMLNISNGNEILEIKYKSSILDVL 235 Query: 239 SFCAL------KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 ++ +E + + D M T IGPH+ DL + + S G+Q Sbjct: 236 GVSSVSDAKFSEENIVELMMKKSFDDIMRGNTKIGPHQDDLEFFINNLE-ARTYASQGQQ 294 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD- 351 + +++ + L+ + TG PILLLD++ + LD++++ L + D Q F+T Sbjct: 295 RSIVLSLKLSEIHYLKQKTGDYPILLLDDVLSELDKNRQLKLLDAI-DENVQTFITTPSI 353 Query: 352 KSVFDSLNETAKFMRISNHQA 372 + + L E AK +I N Sbjct: 354 TDIKEDLLEKAKVFKIDNGNI 374 >gi|260590842|ref|ZP_05856300.1| RecF protein [Prevotella veroralis F0319] gi|260537193|gb|EEX19810.1| RecF protein [Prevotella veroralis F0319] Length = 368 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 160/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L A+ F+G NG GKTN+L+A+ +LS R ++V Sbjct: 1 MQLNKLSIINYKNIEAATLDLSAKLNCFIGHNGEGKTNLLDAVYYLSFCRSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + F + ++ + + + N + + + + + Sbjct: 61 MRHDADYFVLEGDYTTDGGDKEQVYCGMKRG---TKKHFKRNKKEYKRLSMHIGQVPLIF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P+ + G S ERRR +D ++ D + + + + ++ RN+LL E DS+ Sbjct: 118 VSPADATLIDGGSEERRRLMDVVISQYDTPYIEDLNRYNKALQQRNKLLKQEEEPDSTLM 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QMAE G I R + L+ + Q ++SL + Sbjct: 178 ELLEMQMAEYGEAIYKKRAAFVEELTPVFQRIYQTICENREQVSLEYVSHCQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + R D + +L G H+ DL++ D I GS G+ K ++ + LA Sbjct: 230 RGSLLDVIRRDRAKDRIMGYSLHGIHKDDLVMKLGDYPIRRE-GSQGQNKTYVLALKLAQ 288 Query: 304 ARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + T+G P+LLLD+I LD + + R+V+ D QIF+T T++ D + + Sbjct: 289 FDFLRRTSGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDYGQIFITDTNRDHLDKILQG 348 Query: 362 A----KFMRISNHQA 372 + K + + Sbjct: 349 SSFSYKIFSVEGGEI 363 >gi|330718065|ref|ZP_08312665.1| DNA replication and repair protein RecF [Leuconostoc fallax KCTC 3537] Length = 343 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 71/347 (20%), Positives = 137/347 (39%), Gaps = 14/347 (4%) Query: 33 VGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKL 92 +G+N GKTN+LE+I L+ R R ++ D+ + + G + L Sbjct: 1 MGENAQGKTNLLESIYVLALARSHRTSNDKDLIQWQQKE-----TTISGRVHRRTGDLPL 55 Query: 93 ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152 + ++N + + + L + P + G RRRF+D ++ Sbjct: 56 SLNFSNKGKKARVNHLEQSKLSQYVGQLNVILFAPEDLELVKGAPTIRRRFIDMEFGQMN 115 Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINAL 208 P + ++++++ RN L D+ + + Q+ + G ++ +AR + L Sbjct: 116 PLYLYHSAQYKKILKNRNAYLKRLQLGQTKDTVFLDVLTEQLVDTGSQVILARQAFLKNL 175 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLI 266 + + KL+L + + +K ++ + L + + T + Sbjct: 176 ELAAQPIHTEISNQQEKLTLKYQSSVDLSENTNIDQIKSQFLESLRQQYQREKSQGSTAL 235 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 GPHR D+ K + GS G+Q+ + + LA L+ TG P+LLLD++ + L Sbjct: 236 GPHRDDVQFWVNGKDV-ATFGSQGQQRTAALSVKLAEIHLMQQETGEYPVLLLDDVLSEL 294 Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKFMRISNHQA 372 D ++ L + D Q F+T V L K + Q Sbjct: 295 DASRQTHLLLAIQDK-VQTFITAPSLSDVAKQLIHAPKVFHVKQGQI 340 >gi|332827263|gb|EGK00033.1| hypothetical protein HMPREF9455_03622 [Dysgonomonas gadei ATCC BAA-286] Length = 368 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 153/376 (40%), Gaps = 19/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L+I ++N L + F+G NG+GKTN+L+AI +LS + + Sbjct: 1 MILERLSILNYKNIEQAELTLSPKINCFLGSNGMGKTNLLDAIYYLSFSKSHNNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F E + + L + + + N + + L + Sbjct: 61 ILHDAE-FAVIQGWYEIGDKQEEFFCSLR---RKQKKQFKRNKKEYERLSDHIGLLPLVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + PS + +G S ERR+F+D + D + +I + + ++ RN LL + D + Sbjct: 117 VSPSDTELINGGSDERRKFMDLFLSQFDKEYLYSLIRYNKALQQRNALLKVDAPVDDTLL 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+A G I R + I+ ++ + K+ L + F+ Sbjct: 177 GLWDEQLANEGKIIYRKRKDFIDKFIPTFQKFYDFICSSNEKVELKY--ESHFENP---- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ + L R+ D + T G H+ DL + +I GS G+ K +V + LA Sbjct: 231 --DFPELLKSRRQRDKILGYTTAGIHKDDLDMQMDGYSIKRV-GSQGQNKTYVVALKLAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL---- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 FDFLHKATETTPVLLLDDIFDKLDSSRVEQIIKLVLDKDFGQIFVTDTNREHLDEILSRT 347 Query: 359 NETAKFMRISNHQALC 374 N + + + Sbjct: 348 NSNYHLYEVEKGEVIQ 363 >gi|309973509|gb|ADO96710.1| DNA replication and repair protein RecF [Haemophilus influenzae R2846] Length = 359 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 156/367 (42%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ + + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCVLRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T + + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEIQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|68249576|ref|YP_248688.1| recombination protein F [Haemophilus influenzae 86-028NP] gi|145632377|ref|ZP_01788112.1| recombination protein F [Haemophilus influenzae 3655] gi|145640665|ref|ZP_01796248.1| recombination protein F [Haemophilus influenzae R3021] gi|81335995|sp|Q4QLR9|RECF_HAEI8 RecName: Full=DNA replication and repair protein recF gi|68057775|gb|AAX88028.1| DNA replication and repair protein RecF [Haemophilus influenzae 86-028NP] gi|144987284|gb|EDJ93814.1| recombination protein F [Haemophilus influenzae 3655] gi|145274591|gb|EDK14454.1| recombination protein F [Haemophilus influenzae 22.4-21] gi|301169717|emb|CBW29318.1| gap repair protein [Haemophilus influenzae 10810] Length = 359 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 158/367 (43%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E AL I + Q P ++++++ + + Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCVLRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F+T T + + + E K Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346 Query: 364 FMRISNH 370 + N Sbjct: 347 MFSVHNG 353 >gi|291457886|ref|ZP_06597276.1| RecF protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291419430|gb|EFE93149.1| RecF protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 379 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 157/371 (42%), Gaps = 17/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + FRNY +L L I G+N GKTN+LEAI + +R D+ Sbjct: 1 MQIDSLELQNFRNYENLSLHLCRGSNILYGENAQGKTNLLEAIFMACTAKSYRFTKDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G ++ +G A I + + + + I+++ IR EL I Sbjct: 61 IRFGEEEA---HIKLILRKGSAPYRIDMHLK-RNQSKGIAIDEIPIRRASELFGIANIVC 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + + RRRFLD + ++ + + + + R++ RNRLL + F + Sbjct: 117 FSPEDLSLIKDGPVVRRRFLDLELCQLNRGYLQELGRYGRILNQRNRLLRDIPFKAGLLD 176 Query: 185 ---SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+ G+ + R + LS +I E + + K+ + + K Sbjct: 177 TLSVWDEQLLSSGIALIEIRSAFMKRLSPIISEIHGRLSGGREKIEVDYEPNVK------ 230 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 E + KKL R+ + +L GPHR D+ + I GS G+Q+ + + L Sbjct: 231 --AENFRKKLSLLRESELKQHLSLAGPHRDDISFRIDGRDIR-KFGSQGQQRTAALALKL 287 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 + L+ PILLLD++ + LD ++N L +I+ D + I TG D + Sbjct: 288 SEIELVREMIDDTPILLLDDVLSELDSARQNYLLKILKDTQNIISCTGLDDFLSKRFPID 347 Query: 362 AKFMRISNHQA 372 + ++ + Sbjct: 348 -QLYQVEGGKI 357 >gi|120596836|ref|YP_961410.1| recombination protein F [Shewanella sp. W3-18-1] gi|166221867|sp|A1RDX9|RECF_SHESW RecName: Full=DNA replication and repair protein recF gi|120556929|gb|ABM22856.1| DNA replication and repair protein RecF [Shewanella sp. W3-18-1] gi|319424420|gb|ADV52494.1| DNA replication and repair protein RecF [Shewanella putrefaciens 200] Length = 360 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 163/373 (43%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI FRN +L+ + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLTRLNIEAFRNIQFAQLIPAPGINVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + FA + G + I ++ + V+ I+ ++ + L + L I Sbjct: 61 INNDNDK-LTLFATLNLARGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DP+ + R+++ RN+LL G + Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGAVYTH-IQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ R +++L+ L+ + E P + + ++ K Sbjct: 176 FWDQEFVRYAEQVTEIRNHYVDSLNGLLKGII-GEFLPSVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++A+ L + D + T+ GPH++DL + + A S G+ K+++ + +A Sbjct: 228 TDFAELLENQYSRDLATGHTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362 +L+ I L+D++ + LD R L + +TD G+Q+F+T D + DSL+ Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPN 346 Query: 363 KFMRISNHQALCI 375 + + + + Sbjct: 347 RMFHVEQGRVTVV 359 >gi|325270881|ref|ZP_08137468.1| recombination protein F [Prevotella multiformis DSM 16608] gi|324986678|gb|EGC18674.1| recombination protein F [Prevotella multiformis DSM 16608] Length = 368 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 163/377 (43%), Gaps = 23/377 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L A+ F+G NG GKTN+L+A+ +LS + ++V Sbjct: 1 MQLDKLSIINYKNIQAATLNLSARLNCFIGRNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R S F + G +G +K T+ + + N + + + + + Sbjct: 61 IRHDSDYFVLEGDYTTDAGEQGQVYCGMKRGTK-----KHFKWNRKEYKRLSQHIGKVPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSS 181 ++ P+ + G S ERRR +D ++ D + + + + ++ RN LL EG D + Sbjct: 116 IFVSPADAALIEGGSEERRRLMDVVISQYDTPYIEALGRYNKALQQRNSLLKQEGEPDPT 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 +E QMAE G + R + L+ + Q ++SL + Sbjct: 176 LMELLEMQMAEHGETLYRKRKAFVQELTPVFQRIYQTICCNREQVSLEYVSHCQ------ 229 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + + R D + +L G H+ DL++ + GS G+ K ++ + L Sbjct: 230 --RGSLLDVIQRDRTKDRIMGFSLHGTHKDDLVMKLGGYPMKRE-GSQGQNKTYVLALKL 286 Query: 302 AHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLN 359 A + T+G P+LLLD+I LD + + R+V+ D QIF+T T++ D + Sbjct: 287 AQFDFLHRTSGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIFITDTNRDHLDRIL 346 Query: 360 E----TAKFMRISNHQA 372 + K + N + Sbjct: 347 QGSGFDYKLFSVENGEI 363 >gi|56695076|ref|YP_165423.1| recombination protein F [Ruegeria pomeroyi DSS-3] gi|56676813|gb|AAV93479.1| DNA replication and repair protein RecF [Ruegeria pomeroyi DSS-3] Length = 366 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 137/361 (37%), Positives = 198/361 (54%), Gaps = 11/361 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + IS FR++ LRL D + G NG GKTNILEA+S SPGRG RRAS A++ Sbjct: 3 LALTAITISHFRSHRLLRLSLDERPVAIHGPNGAGKTNILEAVSMFSPGRGMRRASAAEM 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 TR + A + +I E + R ++I+D V L + +R+ W Sbjct: 63 TRRPEVLGWKLSAELVAGHQRHEIETWSE---GGAARQVRIDDKAASQVA-LGRLVRMVW 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVPSMDR++ RRRFLDRM + +P H ++ +E+ MR RNRLL E D+ W Sbjct: 119 LVPSMDRLWIEGPEGRRRFLDRMTMSFEPDHAEAVLVYEKAMRERNRLLREQVRDAHWYL 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++E QMA G +I+ AR + + + +FP +L L +G +S L+ Sbjct: 179 ALETQMAAAGHRIHAARQS--TLTALAAAQTQAETSFPTAELELI-QTEGALPESEGDLR 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E L + R D + RTL+GPHRSDL Y K + + STGEQK +LV + LA+A Sbjct: 236 E----ALAESRFRDLAAGRTLVGPHRSDLYGVYAAKGVPASDCSTGEQKALLVSLILANA 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ G P+LLLDEI+AHLD +R AL+ + +G+Q +MTGT +F L A+ Sbjct: 292 RALARQVGAPPVLLLDEIAAHLDAGRRAALYDEICALGAQAWMTGTGPELFSELGARAQT 351 Query: 365 M 365 + Sbjct: 352 I 352 >gi|89898370|ref|YP_515480.1| recombination protein F [Chlamydophila felis Fe/C-56] gi|123483260|sp|Q254F3|RECF_CHLFF RecName: Full=DNA replication and repair protein recF gi|89331742|dbj|BAE81335.1| DNA replication and repair protein [Chlamydophila felis Fe/C-56] Length = 367 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 91/368 (24%), Positives = 157/368 (42%), Gaps = 10/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRNY ++ G+N GKTN+LEA+ LS GR FR + + Sbjct: 1 MNILSLRLKNFRNYKEAKISLSPNMNYIFGENAQGKTNLLEALYVLSLGRSFRTSHLTEA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GS FF +E S KL D+ + + + I+ + +L + I Sbjct: 61 ISFGSAYFF-----LEMTCEKDGFSHKLSIYVDKHGKKILSDQSPIKTLSQLIGMVPIVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + SG +RR FL+ ++ DP+++ + + R + RN LL S S Sbjct: 116 FSSKDRLLISGSPSDRRLFLNLLLSQCDPQYKHTLSYYHRALLQRNSLLKTKQI--STLS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A LG + ++R L+ L+ + HI++ L + S ++ Sbjct: 174 VWDEQLATLGAYLTLSRFTCCEQLNQLVQKLWNNSLSEHIRIKFKSSLIKQDKLSKESII 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EE K+L D T +GPHR D + D ++ S G++ +L + LA Sbjct: 234 EELRKQLTSSLHRDLELGSTSVGPHREDFTLMINDLPVS-QFSSEGQKHSLLAILRLAEC 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 I N P+ +D+I + LD + + L + +G Q MT T +L++ ++ Sbjct: 293 LYIKNIHNVCPLFCMDDIHSGLDNHRISQLLDLAPTLG-QTLMTSTHLPH-QTLSKNSRI 350 Query: 365 MRISNHQA 372 ++ Q Sbjct: 351 FLVNQAQV 358 >gi|317481502|ref|ZP_07940567.1| DNA replication and repair protein RecF [Bacteroides sp. 4_1_36] gi|316902348|gb|EFV24237.1| DNA replication and repair protein RecF [Bacteroides sp. 4_1_36] Length = 370 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 153/375 (40%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R + FF E +G +I ++ R + + N + + L + Sbjct: 61 IRHDAD-FFVIQGFYEAADGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + + K+ L+ + Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFIREFIPIFQSFYSFISQDREKVGLSYDSHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 231 --ASLLEVLKESRVRDQIMGYSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDSFGQIFITDTNREHLDRILHK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ Sbjct: 348 VGSDYKMFRVEQGTV 362 >gi|19551253|ref|NP_599255.1| recombination protein F [Corynebacterium glutamicum ATCC 13032] gi|62388896|ref|YP_224298.1| recombination protein F [Corynebacterium glutamicum ATCC 13032] gi|51316227|sp|Q6M8X7|RECF_CORGL RecName: Full=DNA replication and repair protein recF gi|21322768|dbj|BAB97397.1| Recombinational DNA repair ATPase [Corynebacterium glutamicum ATCC 13032] gi|41324229|emb|CAF18569.1| DNA REPAIR AND GENETIC RECOMBINATION PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 394 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 98/388 (25%), Positives = 172/388 (44%), Gaps = 31/388 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + ++R++ L++ + T+F+G NG GKTNI+EAI +L+ R +S A + Sbjct: 1 MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R + + S A +G E A + IK + +N +R EL ++ Sbjct: 61 VRAHAENARVSAVAVNQGRELAAHLLIK-----PHAANQASLNRTKVRTPRELLGVVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174 P + G ERRR+LD ++ PR D++++++ RN LL Sbjct: 116 LFAPEDLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQRNALLKTATIALRRG 175 Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV---QKENFPHI--- 224 EG S + + Q+A LG ++ AR ++N L I E E+ P Sbjct: 176 YGTEEGAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNY 235 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 K ++ L + ++ +L R+ + +L+GPHR D+ + D+ Sbjct: 236 KTTIDQGLSQFSEFDAGIIEATLLTELAAKRQREIERGSSLVGPHRDDVDLMLGDQPAK- 294 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 S GE + + +A L+ + G PIL+LD++ + LD +R L I ++ Q Sbjct: 295 GFASHGETWSFALSLRIAEFNLLK-SDGTDPILILDDVFSELDAGRREKLVGIAQEVE-Q 352 Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372 + +T +V D L E K + + H Sbjct: 353 VLITA---AVHDDLPENLKKVLTAQHTV 377 >gi|261346740|ref|ZP_05974384.1| DNA replication and repair protein RecF [Providencia rustigianii DSM 4541] gi|282565140|gb|EFB70675.1| DNA replication and repair protein RecF [Providencia rustigianii DSM 4541] Length = 364 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 151/369 (40%), Gaps = 12/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN L +G NG GKT+ILEAI L GR FR V Sbjct: 1 MILSRLLIRDFRNIEDADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F +S+ L + + ++I+ + EL K L + Sbjct: 61 IRHDQEQFILHGKLGHLDSDRKALSLGLSKNREGDSK-VRIDGTDGHKIAELAKLLPMQL 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR F+D F + D +RL++ RN L + Sbjct: 120 ITPEGFTLLNGGPKYRRAFIDWGCFHNEALFFSTWSDLKRLLKQRNAALRQ-VTRYEQIR 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A + +I+ R E I ++ I + Q + P LS++ + Sbjct: 179 HWDQQLAPISEQISQWRGEYIAGIAENIEQTCQ-QFLPEFSLSVSFQRGWDKEI------ 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y+++L + D T GPH++DL + D S G+ K+++ + LA Sbjct: 232 -DYSEQLERQFERDRALTYTSSGPHKADLRIR-ADGIPVEDMLSRGQLKLLMCALRLAQG 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 ++ +G + LLD+ ++ LD +R L + +Q+F++ T V D ++ +K Sbjct: 290 EYLTQQSGQRCLYLLDDFASELDSGRRQLLATRLKATQAQVFVSAITPAQVNDMIDANSK 349 Query: 364 FMRISNHQA 372 + + Sbjct: 350 MFSVEQGKI 358 >gi|209966327|ref|YP_002299242.1| recombination protein F [Rhodospirillum centenum SW] gi|209959793|gb|ACJ00430.1| DNA replication and repair protein RecF, putative [Rhodospirillum centenum SW] Length = 377 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 145/372 (38%), Positives = 210/372 (56%), Gaps = 10/372 (2%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L ++ FR+Y + RL DA+ + G NG GKTN+LEA+SFL+PGRG RRA A++ R Sbjct: 2 TRLTVTRFRSYLTARLDCDARPVVLTGPNGAGKTNLLEAVSFLAPGRGLRRARLAEIERT 61 Query: 68 G-----SPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHL 120 G + ++ A +E G +I + + R +QI+ + L +H+ Sbjct: 62 GPAEGWAGPGWAVAATLETPAGPVEIGTGRDPAAGPESERRLVQIDGRAAKGQIALARHV 121 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + WL P MDR+F + RRRFLDR+VF DP H R+ +E +R R RLL EG D Sbjct: 122 AVVWLTPQMDRLFLEAASGRRRFLDRLVFGFDPAHAGRLSQYEAALRERARLLREGPADP 181 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W +++E +MA LGV + AR +M+ L++ V FP +++ G +D Sbjct: 182 AWLTTLEDRMATLGVAVAAARADMVARLAAAAALGV--GPFPAPGMAMAGGVDDLVAAGP 239 Query: 241 C-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 A ++ + L D R+ D+ + IGPHRSDL V K + GSTGEQK +L+ I Sbjct: 240 ALAAEDALRRTLRDSRRRDAEAGGAAIGPHRSDLCVTCRAKEMPAERGSTGEQKALLIAI 299 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA+ARL+ TG AP+LLLDE++AHLD D+R ALF + GSQ +MTGTD VF L Sbjct: 300 VLANARLMKAETGTAPLLLLDEVAAHLDADRRAALFAEILATGSQAWMTGTDAQVFAELG 359 Query: 360 ETAKFMRISNHQ 371 A +R+ + + Sbjct: 360 AAASHVRVEDSR 371 >gi|255007766|ref|ZP_05279892.1| putative DNA replication and repair protein [Bacteroides fragilis 3_1_12] gi|313145469|ref|ZP_07807662.1| DNA replication and repair protein recF [Bacteroides fragilis 3_1_12] gi|313134236|gb|EFR51596.1| DNA replication and repair protein recF [Bacteroides fragilis 3_1_12] Length = 370 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 156/375 (41%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E M+G +I ++ R + + N + + + + Sbjct: 61 IRHEQD-FFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKR---NKKEYSRLSDHIGFIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I+ + + + ++ LT + Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHARG------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 231 --ASLLEVLKESRVRDKIMGYSLRGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILYK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ N Sbjct: 348 VGSDYKMFRVENGAI 362 >gi|85374625|ref|YP_458687.1| recombination protein F [Erythrobacter litoralis HTCC2594] gi|84787708|gb|ABC63890.1| recombinational DNA repair ATPase [Erythrobacter litoralis HTCC2594] Length = 361 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 134/368 (36%), Positives = 196/368 (53%), Gaps = 14/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + +S RN+A RL A+ + VG+NG GKTN+LEAIS L+PGRG RRA+ D+ Sbjct: 1 MALDRITLSNLRNHAETRLQGTARFNLLVGENGAGKTNVLEAISLLAPGRGLRRAALPDI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 R G F+ A + +G + + R R +++N V L + L I Sbjct: 61 ARAGGGGGFTVGASLTPGDGGEPVQLGTMVDPARPGRRRVRVNGAEASAVS-LGEWLAIG 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSW 182 WL P+MD IF G + +RRRF+DRM A+DP H R +E ++R RNRLL E D +W Sbjct: 120 WLTPAMDGIFMGPAGDRRRFVDRMALALDPLHARHASRYENVLRERNRLLGDEREPDPTW 179 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 IEAQMA+ G + +R ++ L + + + P + L + F++ Sbjct: 180 LDGIEAQMAKHGSALAQSRARLVGVLVETLASHPDE---PFARPLLAILTESPFEE---- 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E L R D + RTLIGPHR DL V K A STGEQK +L+ I LA Sbjct: 233 --EALRVALRANRGRDRRAGRTLIGPHRDDLTVTMAGKDTPAASCSTGEQKAMLIAITLA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 H L + G ++LLDE++AH+D +R ALF + + G+Q++MTGT+ + F ++ A Sbjct: 291 HGELAAR--GRPGVMLLDEVAAHIDPVRREALFERLRETGAQVWMTGTELAPFAAIEAEA 348 Query: 363 KFMRISNH 370 R+S Sbjct: 349 AVWRVSGG 356 >gi|146280400|ref|YP_001170553.1| recombination protein F [Pseudomonas stutzeri A1501] gi|166220726|sp|A4VFG0|RECF_PSEU5 RecName: Full=DNA replication and repair protein recF gi|145568605|gb|ABP77711.1| DNA replication and repair protein RecF [Pseudomonas stutzeri A1501] Length = 370 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 158/374 (42%), Gaps = 15/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+++ RN + L + I GDNG GKT++LEAI L R FR V Sbjct: 1 MSLSRLSVTGVRNLHPVTLSPSPRINILFGDNGSGKTSLLEAIHLLGLARSFRSIRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P+ + F +VE + + ++ + VR ++I+ +R EL L + Sbjct: 61 ITYEQPAC-TVFGQVELPDQHSR-ALGVSRDRSGEVR-IRIDGQSVRSAAELADTLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P R+ G RR+FLD VF ++ R ++ +R RN L G DS+ + Sbjct: 118 INPDSFRLLEGAPKLRRQFLDWGVFHVEHRFMSAWQRLQQALRQRNSWLRHGTLDSASDA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +++ +I+ R I AL + E K L+L+ + D+ + Sbjct: 178 AWSRELSLASDEIDGYRRAYIQALKPVF-ETTLKALLDLDGLTLSYYRGWDKDRPLVDV- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L + D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 ------LASSLERDRAMGHTQSGPQRADLRLKVGSHNAAEVL-SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNE--T 361 L+S I L+D++ + LD R AL R++ + Q+F+T D +V E Sbjct: 289 HLVSEAKRGQCIYLVDDLPSELDAQHRLALCRLLEQLNCQVFITCVDSTVLQEGWGEQTP 348 Query: 362 AKFMRISNHQALCI 375 + + Q + Sbjct: 349 VSMFHVEHGQITQL 362 >gi|317503542|ref|ZP_07961566.1| recombination protein F [Prevotella salivae DSM 15606] gi|315665354|gb|EFV04997.1| recombination protein F [Prevotella salivae DSM 15606] Length = 366 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 151/374 (40%), Gaps = 18/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N ++ ++ F+G NGVGKTN+L+A+ +LS R A V Sbjct: 1 MILKRLSVINYKNIREATILLSSKLNCFIGSNGVGKTNVLDAVHYLSFCRSAFNPIDAQV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FF + EG + R + + + N R + + + + + Sbjct: 61 ITHNQD-FFVLDGKYSSDEGDEEQIYCGMKRGTK--KHFKRNKKEYRRLSQHIGLIPLVF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P+ + G S ERRR LD ++ D + + + + ++ RN LL E D + Sbjct: 118 ASPADSILIEGGSEERRRLLDVVISQYDHAYIEALSAYNKALQQRNALLKMEEEPDKALL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E QMA G I R + L + + + H ++L G+ Sbjct: 178 EIWEEQMALNGEIIYQKRNSFVERLVPVFQDIYTHISGGHETVALNYVSHGQRGP----- 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + R D +L G HR DL + + GS G+ K + + LA Sbjct: 233 ---LLDTIQRDRHRDRAVGYSLHGVHRDDLEMLLDGYQMKRE-GSQGQHKTYALALKLAQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSLNETA 362 + T+ P+LLLD+I LD ++ + ++V D QIF+T T++ D + Sbjct: 289 FDFLRRTSNNTPLLLLDDIFDKLDANRVEKIVQLVGGDEFGQIFITDTNRDHLDQILARG 348 Query: 363 ----KFMRISNHQA 372 K + N + Sbjct: 349 DFDYKLFSVDNGEI 362 >gi|46447340|ref|YP_008705.1| putative DNA replication and repair protein recF [Candidatus Protochlamydia amoebophila UWE25] gi|51316228|sp|Q6MAG9|RECF_PARUW RecName: Full=DNA replication and repair protein recF gi|46400981|emb|CAF24430.1| putative DNA replication and repair protein recF [Candidatus Protochlamydia amoebophila UWE25] Length = 359 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 93/364 (25%), Positives = 155/364 (42%), Gaps = 10/364 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY L F Q + G N GKT +LEAI L GR FR + Y D+ Sbjct: 1 MTLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + SFF +E I L+ + R + N + + L + Sbjct: 61 IQQQFESFF-----LEAQFYKHGIEQTLKFGFHTTDRKIIYNSTPLATLSNLLGLIPGVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P ++ G RR+FLD + +DP + + + R ++ RN LL S Sbjct: 116 ITPDDVQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQRNHLLKMKQQIS--ID 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 S E +M + R + I L +L +Y + + L+L + S +K Sbjct: 174 SWEQEMTHSAAYLIQQRYQTITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSIDEIK 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + K+L R+ + TL GPH+ DL V + I S G+Q+ + + A Sbjct: 234 KLLVKQLCKNRQREMQIGYTLSGPHKDDLFVAIGGRDIRY-FASEGQQRSCVNALHFAEW 292 Query: 305 -RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 RL G P+ ++D+I LD ++++ L + +G Q+F+T TD D ++ K Sbjct: 293 NRLHQRGDGDFPLFMIDDIGMSLDSNRKDRLVEQLQSVG-QVFLTTTDPKFLDHIDADKK 351 Query: 364 FMRI 367 + Sbjct: 352 IFTL 355 >gi|223940285|ref|ZP_03632143.1| DNA replication and repair protein RecF [bacterium Ellin514] gi|223891052|gb|EEF57555.1| DNA replication and repair protein RecF [bacterium Ellin514] Length = 361 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 169/369 (45%), Gaps = 19/369 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRNY L + F + +GDN GKTNILEAI ++ R FR + + Sbjct: 1 MHLAHLRLRDFRNYPRLDVDFAPGFQVLLGDNAQGKTNILEAIYLMATLRSFRGVGGSQM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G +F V G D IK+ + R L +++ IR + + +R+ Sbjct: 61 VRHGQKGYFVGGKVV----GQGDHEIKMYWSP--AERKLSLDNQPIRKLADYFGAIRVVI 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 ++ G S RRRF+D ++ P + + + +R RN LL + D S Sbjct: 115 FCTEDLQLVKGTSRARRRFVDLLLSQTHPTYLPLLQRYASALRSRNALLKQRVQDESALE 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 S A++ +LG + R E+I LS L ++ + +L L ++K Sbjct: 175 SFTAELVKLGNDLIRMRHELIPKLSPLARLAYRRISNDAEELRLEYQP---------SVK 225 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +++A +L R + R TLIGPHR ++ + D++ GS G+++ + + + +A A Sbjct: 226 KDFAVELAQTRARERTYRSTLIGPHRDEVQLLLNDRS-AAQFGSEGQKRTLAIALKMAQA 284 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNA---LFRIVTDIGSQIFMTGTDKSVFDSLNET 361 ++ G APILL+D+I LD +R+ L Q+FMT T+++ L Sbjct: 285 EYLTGLHGSAPILLIDDIMGELDAKRRSGLLPLLERAHHTRGQVFMTCTEENWPRELGRD 344 Query: 362 AKFMRISNH 370 + + Sbjct: 345 LHRWEVRSG 353 >gi|225181145|ref|ZP_03734591.1| DNA replication and repair protein RecF [Dethiobacter alkaliphilus AHT 1] gi|225168114|gb|EEG76919.1| DNA replication and repair protein RecF [Dethiobacter alkaliphilus AHT 1] Length = 369 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 163/375 (43%), Gaps = 12/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + + +RNY+SL L + + G N GKTN+LE+++F++ GR FR + ++ Sbjct: 1 MRLETIELRNYRNYSSLSLELNPNINLLFGSNAQGKTNLLESVAFIAAGRSFRTRNEGEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + ARV G + + + + +N + + L Sbjct: 61 ILWGENNC-TASARVCNRMGRETLKVSFDAGSRN--KIFSVNGLTMNR-SNYAGRLVTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181 P I G RR+F D + I P + + ++++R RN LL + S Sbjct: 117 FTPEDLSIVKGSPAVRRKFFDDEISKISPVYEYELGRLQQIIRQRNNLLKKFRQKVLGSQ 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 +S Q+A L KI I RV I + L + L + D Sbjct: 177 ELASWNEQLAILSAKILIKRVTAIRRIGLLARLSHRNLTGRDESLEILYQSFLPLDDGIL 236 Query: 242 A---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +++ L + + ++ +TL+GPHR D++ + + + + S G+Q+ +++ Sbjct: 237 DAQVIQDALLAGLEEKKHEEARLGQTLLGPHRDDIVFNINGRNARL-YASQGQQRTLVLA 295 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA I TG P+LL D++ + LDE +R L + D Q F+TGT+ Sbjct: 296 LKLAELEFIKGETGEYPVLLFDDVFSELDERRRRLLVETI-DGRIQTFITGTEAEKLRQF 354 Query: 359 NETAKFMRISNHQAL 373 E+ K ++ + + Sbjct: 355 KESGKMFKVREGEVV 369 >gi|327478615|gb|AEA81925.1| recombination protein F [Pseudomonas stutzeri DSM 4166] Length = 370 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 157/374 (41%), Gaps = 15/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+++ RN + L + I GDNG GKT++LEAI L R FR V Sbjct: 1 MSLSRLSVTGVRNLHPVTLTPSPRINILFGDNGSGKTSLLEAIHLLGLARSFRSIRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P+ + F +VE + + ++ + VR ++I+ +R EL L + Sbjct: 61 ITYEQPAC-TVFGQVELPDQHSR-ALGVSRDRSGEVR-IRIDGQSVRSAAELADTLPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P R+ G RR+FLD VF ++ R ++ +R RN L G D + + Sbjct: 118 INPDSFRLLEGAPKLRRQFLDWGVFHVEHRFMSAWQRLQQALRQRNSWLRHGTLDGASDA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +++ +I+ R I AL + E K L+L+ + D+ + Sbjct: 178 AWSRELSLASDEIDGYRRAYIQALKPVF-ETTLKALLDMDGLTLSYYRGWDKDRPLVDV- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L + D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 ------LASSLERDRAMGHTQSGPQRADLRLKVGSHNAAEVL-SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNE--T 361 L+S I L+D++ + LD R AL R++ + Q+F+T D +V E Sbjct: 289 HLVSEAKRGQCIYLVDDLPSELDAQHRLALCRLLEQLNCQVFITCVDSTVLQEGWGELTP 348 Query: 362 AKFMRISNHQALCI 375 + + Q + Sbjct: 349 VSMFHVEHGQITQL 362 >gi|290968151|ref|ZP_06559696.1| putative recombination protein F [Megasphaera genomosp. type_1 str. 28L] gi|290781826|gb|EFD94409.1| putative recombination protein F [Megasphaera genomosp. type_1 str. 28L] Length = 367 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 164/372 (44%), Gaps = 10/372 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + + FRNY ++ L F IF G+NG GKTN+LE++ G+ +R + ++ Sbjct: 1 MKITGVRLFNFRNYKNMELNFHNMIHIFYGNNGQGKTNLLESLYIAGIGKTYRGIADREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S R + I L S + L IN+ + E + Sbjct: 61 IRWEQEEG-SIIVRFLRNHVEQQVKIILSRV---SSKQLWINETKT-IGREFFGSIPEIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 P ++ G RR+F+D + ++ + R ++ + ++ RN LL E +D + Sbjct: 116 FSPDDLQLIKGAPSLRRKFMDMELSQVNRMYYRCLLQYNHILAQRNALLKEVRYDKNISF 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + Q+A L + R+EM+ ++ L + ++ L + D+ L Sbjct: 176 AEWDTQLAVLAADMVKKRLEMLKKINVLADKIHKELTQGKESLHVYYKQPYNQDRHTVIL 235 Query: 244 KE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + +YA+ L + DS T IGPHR D K + S G+Q+ ++ + LA Sbjct: 236 QASQYARLLQENIAADSYKNATSIGPHRDDFTFCIEGKEAK-KYASQGQQRTAILSLKLA 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + + G PILLLD++ + LD +R L + V Q F+T TD +F L E Sbjct: 295 ELEFVYSEIGEYPILLLDDVMSELDLLRRKQLLQFVHQ-RIQTFITTTDPLLFSMLQEGC 353 Query: 363 KFMRISNHQALC 374 + +I + + + Sbjct: 354 Q-WKIEDGKVIQ 364 >gi|212632927|ref|YP_002309452.1| recombination protein F [Shewanella piezotolerans WP3] gi|226737834|sp|B8CH73|RECF_SHEPW RecName: Full=DNA replication and repair protein recF gi|212554411|gb|ACJ26865.1| DNA replication and repair protein RecF [Shewanella piezotolerans WP3] Length = 360 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 164/373 (43%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I FRN S +L + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLNRLHIEAFRNITSAQLQPGDGLNVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + FA ++ E + I ++ + V+ IN ++ + L + L I Sbjct: 61 INNDADA-LTLFANMQSAEDESKIGLRRFRSGEIEVK---INGDKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DPR ++ R+++ RN+LL + SS Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDPRFYAAWVNVRRILKQRNQLLRDESPYSS-IQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + R + +++L+ L+ ++ E P + + ++ K Sbjct: 176 FWDKEFIRYAELVTEIRKQYVDSLNELLKGIIE-EFLPQVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EYA+ L D + T+ GPH++DL + A S G+ K+++ + +A Sbjct: 228 TEYAQLLETQYPRDLATGFTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--DSLNETA 362 +L+ I L+D++ + LD R L + + D G+Q+F+T + + + + Sbjct: 287 KLLKQQIDKKSIYLVDDLPSELDAQHRKLLLQQLADTGAQVFVTAIEPAAIVDSLITPPS 346 Query: 363 KFMRISNHQALCI 375 K + + + I Sbjct: 347 KMFHVEHGRVTVI 359 >gi|329942796|ref|ZP_08291575.1| DNA replication and repair RecF family protein [Chlamydophila psittaci Cal10] gi|332287388|ref|YP_004422289.1| recombination protein F [Chlamydophila psittaci 6BC] gi|313847968|emb|CBY16965.1| DNA replication and repair protein [Chlamydophila psittaci RD1] gi|325506793|gb|ADZ18431.1| recombination protein F [Chlamydophila psittaci 6BC] gi|328815056|gb|EGF85045.1| DNA replication and repair RecF family protein [Chlamydophila psittaci Cal10] gi|328914637|gb|AEB55470.1| recF protein [Chlamydophila psittaci 6BC] Length = 368 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 92/368 (25%), Positives = 157/368 (42%), Gaps = 10/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRNY + F G+N GKTN++EA+ LS GR FR + + Sbjct: 1 MNILSLRLKNFRNYKEAEVSFSPNINYIFGENAQGKTNLIEALYVLSLGRSFRTSHLTEA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GS FF +E + L T D+ + + + I+ + +L + I Sbjct: 61 IFFGSSYFF-----LEMTFEKDGVPHTLSTYVDKQGKKIFCDQSPIKTLSQLIGMIPIVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + SG +RR FL+ ++ DP+++ + + R + RN LL +S S Sbjct: 116 FSAKDRCLISGSPSDRRLFLNLLLSQCDPQYKHSLSYYHRALLQRNTLLKTKQ--TSTLS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A LG + ++R L+ LI E + + L + S A+K Sbjct: 174 VWDEQLATLGSYLCLSRYTCCTQLNQLIQELWNNSLSERLFIKFKSPLIKQCKISQEAVK 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E K+L D T +GPHR D + D + S G+++ +L + LA + Sbjct: 234 NELHKQLSASLHRDLELGNTSVGPHREDFTLMINDLPV-AQFSSEGQKQSLLAVLKLAES 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 I + P+ +D+I A LD + + L + +G Q +T T +L+ET + Sbjct: 293 LYIKSIHNVYPLFCMDDIHAGLDNQRISQLLGLAPSLG-QTLITSTTLPH-QTLSETHRI 350 Query: 365 MRISNHQA 372 ++ Q Sbjct: 351 FSVNQAQI 358 >gi|299141070|ref|ZP_07034208.1| RecF protein [Prevotella oris C735] gi|298578036|gb|EFI49904.1| RecF protein [Prevotella oris C735] Length = 366 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 147/374 (39%), Gaps = 18/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I ++N + + F+G NGVGKTN+L+A+ +LS R + V Sbjct: 1 MILNRLSILNYKNIREATISLSPKLNCFIGSNGVGKTNVLDAVHYLSFCRSAFNPIDSQV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F EG + R + + + N R + + + + + Sbjct: 61 IMHNQD-FLVLEGNYTTDEGEEEQIYCGMKRGTK--KHFKRNKKEYRRLSQHIGLIPLVF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 PS + G S ERRR LD ++ D + + + + ++ RN LL E D + Sbjct: 118 ASPSDSVLIEGGSEERRRLLDLVISQYDHAYIEALSAYNKALQQRNALLKMEDEPDKALL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E QMA G I R + L + + H +SL G+ Sbjct: 178 EIWEEQMATNGEVIYQKRDTFVKRLVPVFQNIYSHISGGHETVSLNYVSHGQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + R D +L G HR DL + + GS G+ K + + LA Sbjct: 230 RGLLLDTIQRDRYKDRAVGYSLHGVHRDDLEMLLDGYQMKRE-GSQGQHKTYALALKLAQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSLNETA 362 + +T+ P+LLLD+I LD D+ + ++V G QIF+T T++ D + Sbjct: 289 FDFLRHTSNSTPLLLLDDIFDKLDADRVEQIVQLVGGEGFGQIFITDTNRDHLDRILANG 348 Query: 363 KF----MRISNHQA 372 F ++ + Sbjct: 349 DFDYRLFSVNRGEI 362 >gi|117618875|ref|YP_854530.1| DNA replication and repair protein RecF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560282|gb|ABK37230.1| DNA replication and repair protein RecF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 367 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 154/370 (41%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S+FRN L I VG NG GKT++LEAI +L GR FR V Sbjct: 1 MSLVKLQLSDFRNIQQASLALSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F+ FA+ E I + +D L+I + + EL + L + Sbjct: 61 IRQG-ERAFTLFAQCELEGRQVPIGL---AKDKSGETQLKIAGAQAQRLAELAELLPVQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR +LD VF +P RL++ RN LL + + Sbjct: 117 IHPDGFNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQS-SQYRQLA 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ LG ++ R A++ LI E + P +SL + + D AL Sbjct: 176 YWDQELVRLGGELAEFRASYCQAITPLIKEMTA-DFLPEFDISLGFYRGWEKDTPLNAL- 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L G + D T +GP ++D+ + + S G+ K+++ + LA Sbjct: 234 ------LEAGFERDRALGYTGVGPQKADVRLK-ANGVPAQDILSRGQLKLLVCAMRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--TA 362 ++ + I L+D+ ++ LD DKR L + SQ+F+T D + + Sbjct: 287 LYLNQHSSRGCIFLIDDFASELDVDKRRLLAARLKQCASQVFITAIDTGQLADMMDANDC 346 Query: 363 KFMRISNHQA 372 K + + Sbjct: 347 KLFHVEQGKI 356 >gi|217979344|ref|YP_002363491.1| DNA replication and repair protein RecF [Methylocella silvestris BL2] gi|217504720|gb|ACK52129.1| DNA replication and repair protein RecF [Methylocella silvestris BL2] Length = 398 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 140/372 (37%), Positives = 214/372 (57%), Gaps = 6/372 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +++FR+YASL + AQ + GDNG GKTN+LEA+S L+PGRG RRA +D R Sbjct: 23 VRRLTLADFRSYASLDMEILAQTVVLTGDNGAGKTNVLEALSLLTPGRGLRRAELSDCAR 82 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125 F+ ++ G + +E + R +I+ + H+R+ WL Sbjct: 83 NFGGGGFAVSIEIDAEGGRLQLGTGVEPNGGAALARKFRIDREPAPSIRAFCDHIRVVWL 142 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF--DSSWC 183 P+MD +F G +RRRFLDR+V ++D H R+ ER +R RNRLL E + W Sbjct: 143 TPAMDGLFVGSPGDRRRFLDRLVLSLDADHGARVNALERALRSRNRLLEERGAGNERLWL 202 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFD-QSF 240 ++E ++AEL + + AR E ++ L++LI + + FP +LSL G +D + + Sbjct: 203 DAVEREVAELAIAVAAARFETVSKLAALIAQAGPETEGGFPLAELSLDGDIDRLIETRPA 262 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++EY K L D R D+ + RTLIGP SDL V + K +H STGEQK +LVG+ Sbjct: 263 LEAEDEYRKILRDNRGRDAAAGRTLIGPQSSDLAVRHARKQAAASHSSTGEQKALLVGLI 322 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA ARLI +G AP++LLDEI+AH D +R AL+ ++ +G+Q+++TG D S F L Sbjct: 323 LAQARLIKAMSGLAPLVLLDEIAAHFDPKRRAALYELLGALGAQVWLTGADPSAFAELEG 382 Query: 361 TAKFMRISNHQA 372 A+ ++++ Sbjct: 383 KAQMLQVTPGAI 394 >gi|315634817|ref|ZP_07890099.1| recombination protein F [Aggregatibacter segnis ATCC 33393] gi|315476369|gb|EFU67119.1| recombination protein F [Aggregatibacter segnis ATCC 33393] Length = 358 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 80/369 (21%), Positives = 159/369 (43%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN ++ L D VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDQP-HFTLFGQIQEQQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F RL++ RN L + Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVSFYTLWASLSRLLKQRNAAL-QQVSSYQQMK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L ++++ R E AL I E + P + +S++ + +Q+ Sbjct: 176 IWDVELVKLAEQVSLLRAEYAQALQPEI-EQTCRLFLPELDISVSFHQGWEKEQN----- 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 230 --YAELLARNFERDRALGYTVSGPQKADFRFKANGLPVEDIL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363 + I L+D+ ++ LD+ KR+ L + + + GSQ+F+T ++ + + + Sbjct: 287 EHLMQQKQRHCIFLIDDFASELDQTKRSLLAQRLQNSGSQVFVTAITQNQLKEMQPKKHR 346 Query: 364 FMRISNHQA 372 +I + + Sbjct: 347 TFKIESGKI 355 >gi|313885421|ref|ZP_07819171.1| DNA replication and repair protein RecF [Eremococcus coleocola ACS-139-V-Col8] gi|312619151|gb|EFR30590.1| DNA replication and repair protein RecF [Eremococcus coleocola ACS-139-V-Col8] Length = 327 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 149/333 (44%), Gaps = 12/333 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K +++S +RNY++L+L + TI VG+N GKTN+LEAI LS + R ++ Sbjct: 1 MKLKSIHLSHYRNYSNLQLELNDGLTILVGNNAQGKTNLLEAIFLLSVTKSHRTNHDQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G FA VEG + S L + + + N + + L + Sbjct: 61 IQWGQD-----FALVEGQVQTENYSYPLSLQISSKGKQAKFNYIDQAKLSSFIGKLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG----YFDS 180 P +I G RR+F+D + P + + ++ + RL++ RNR L + FD Sbjct: 116 FAPEDLQIIKGAPGLRRKFIDTELGQSHPVYLQELLTYHRLLKQRNRYLKDYGRSTKFDD 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLDGKFDQ 238 + + Q E VK+ R + + L+ L E ++ + + +S Q Sbjct: 176 LYFEVLSQQFIEQAVKVIGYRTKFVQDLARLAQEIQEELSGQKDQLTISYDASHSRLNYQ 235 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L + + ++ + TL GPHR DL K GS G+Q+ +++ Sbjct: 236 EIDQLAQAFTDLFAANQQREKDQGVTLYGPHRDDLSFYLDGKPAQF-FGSQGQQRTIVLS 294 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 + LA LI G P+LLLD++ + LD ++ Sbjct: 295 LKLAEIELIKELKGHYPVLLLDDVLSELDAHRQ 327 >gi|94502203|ref|ZP_01308698.1| recombination protein F [Oceanobacter sp. RED65] gi|94425664|gb|EAT10677.1| recombination protein F [Oceanobacter sp. RED65] Length = 357 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 167/371 (45%), Gaps = 20/371 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + RN + + + G+NG GKT+ LEAI +L+ + FR ++ Sbjct: 1 MAIELLMLQGVRNLSPTNVSPSPLVNLIYGENGSGKTSFLEAIYYLAYCKSFRTHKQKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + + G L + +E + R +++N V + EL L I Sbjct: 61 IQHGQNT-------MTGFCQLPHKQLGVERNQEGQ-RRIKLNGVCLNSAAELASVLPIQL 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P+M R+ G RR ++D VF ++P+ F+R + RN LL G S Sbjct: 113 LDPTMFRLLEGSPQLRREYIDWGVFHVEPQFFGIWKQFKRAHQTRNALLRAGGASESERK 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +++L +I R+ + L L Y+ + N + ++++ + K DQ Sbjct: 173 IWHSSLSDLANQITSMRIAYLERLKPLFDHYMARLNDG-LGVTMSFYQGWKKDQ------ 225 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L K D S T GP R+DL + + + S G+QK+V+ + LA A Sbjct: 226 -DYYELLESSWKSDIESGYTKSGPQRADLRIK-AENVPAMDVLSRGQQKMVVCALKLAQA 283 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD---SLNET 361 L +G I L+D+++A LD + R AL R++ ++ Q+F+T + + S + Sbjct: 284 DLYKQVSGSPCIFLVDDLAAELDINHRKALCRLLEELKCQVFVTAVESTQIQGCWSPSSQ 343 Query: 362 AKFMRISNHQA 372 K + + Sbjct: 344 LKTFHVEHGTI 354 >gi|146291114|ref|YP_001181538.1| recombination protein F [Shewanella putrefaciens CN-32] gi|166221865|sp|A4Y1A6|RECF_SHEPC RecName: Full=DNA replication and repair protein recF gi|145562804|gb|ABP73739.1| DNA replication and repair protein RecF [Shewanella putrefaciens CN-32] Length = 360 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 163/373 (43%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI FRN +L+ + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLTRLNIEAFRNIQFAQLIPAPGINVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + FA + G + I ++ + V+ I+ ++ + L + L I Sbjct: 61 INNDNDK-LTLFATLNLARGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DP+ + R+++ RN+LL G + Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHADPQFYGAWTNVRRVIKQRNQLLRNGAVYTH-IQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ R +++L+ L+ + E P + + ++ K Sbjct: 176 FWDQEFVRYAEQVTEIRNHYVDSLNGLLKGII-GEFLPSVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++A+ L + D + T+ GPH++DL + + A S G+ K+++ + +A Sbjct: 228 TDFAELLENQYSRDLATGHTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362 +L+ I L+D++ + LD R L + +TD G+Q+F+T D + DSL+ Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPN 346 Query: 363 KFMRISNHQALCI 375 + + + + Sbjct: 347 RMFHVEQGRVTVV 359 >gi|126172260|ref|YP_001048409.1| recombination protein F [Shewanella baltica OS155] gi|160873129|ref|YP_001552445.1| recombination protein F [Shewanella baltica OS195] gi|166221862|sp|A3CYH7|RECF_SHEB5 RecName: Full=DNA replication and repair protein recF gi|189039641|sp|A9KU74|RECF_SHEB9 RecName: Full=DNA replication and repair protein recF gi|125995465|gb|ABN59540.1| DNA replication and repair protein RecF [Shewanella baltica OS155] gi|160858651|gb|ABX47185.1| DNA replication and repair protein RecF [Shewanella baltica OS195] gi|315265354|gb|ADT92207.1| DNA replication and repair protein RecF [Shewanella baltica OS678] Length = 360 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 164/373 (43%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI FRN S +L+ + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLTRLNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FA + G + I ++ + VR I+ ++ + L + L I Sbjct: 61 INND-DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DP+ + R+++ RN+LL G S+ Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGSAYSN-IQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ R +++L+ L+ + E P + + ++ K Sbjct: 176 FWDQEFVRYAEQVTEIRNHYVDSLNELLKGII-GEFLPSVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++A+ L + D + T+ GPH++DL + A S G+ K+++ + +A Sbjct: 228 TDFAELLENQYSRDLATGHTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362 +L+ I L+D++ + LD R L + +TD G+Q+F+T D + DSL+ + Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346 Query: 363 KFMRISNHQALCI 375 + + + I Sbjct: 347 RMFHVEQGRVTVI 359 >gi|145297127|ref|YP_001139968.1| DNA replication and repair protein RecF [Aeromonas salmonicida subsp. salmonicida A449] gi|142849899|gb|ABO88220.1| DNA replication and repair protein RecF [Aeromonas salmonicida subsp. salmonicida A449] Length = 367 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 154/370 (41%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S+FRN L I VG NG GKT++LEAI +L GR FR V Sbjct: 1 MSLVKLQLSDFRNIQQASLKLSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F+ FA+ E I + +D L+I + + +L + L + Sbjct: 61 IRQG-ERAFTLFAQCELEGRQVPIGL---AKDKSGETQLKIAGAQAQRLADLAELLPVQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR +LD VF +P RL++ RN LL + + Sbjct: 117 IHPDGFNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQST-QYRQLA 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ LG ++ R A++ LI E + P +SL + + D L Sbjct: 176 FWDQELVRLGGELAEFRASYCQAITPLIKEMTA-DFLPEFDISLGFYRGWEKDTPLGDL- 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L G + D T +GP ++D+ + + S G+ K+++ + LA Sbjct: 234 ------LEAGFERDRTLGYTGVGPQKADVRLK-ANGVPAQDILSRGQLKLLVCAMRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--TA 362 ++ + I L+D+ ++ LD DKR L + GSQ+F+T D + + Sbjct: 287 LYLNQHSSRGCIFLIDDFASELDVDKRRLLATRLKQCGSQVFITAIDTGQLADMMDANDC 346 Query: 363 KFMRISNHQA 372 K + + Sbjct: 347 KLFHVEQGKI 356 >gi|217971219|ref|YP_002355970.1| recombination protein F [Shewanella baltica OS223] gi|304412707|ref|ZP_07394310.1| DNA replication and repair protein RecF [Shewanella baltica OS183] gi|307305828|ref|ZP_07585574.1| DNA replication and repair protein RecF [Shewanella baltica BA175] gi|254790487|sp|B8E3P6|RECF_SHEB2 RecName: Full=DNA replication and repair protein recF gi|217496354|gb|ACK44547.1| DNA replication and repair protein RecF [Shewanella baltica OS223] gi|304348917|gb|EFM13332.1| DNA replication and repair protein RecF [Shewanella baltica OS183] gi|306911321|gb|EFN41747.1| DNA replication and repair protein RecF [Shewanella baltica BA175] Length = 360 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 164/373 (43%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI FRN S +L+ + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLTRLNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FA + G + I ++ + VR I+ ++ + L + L I Sbjct: 61 INND-DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DP+ + R+++ RN+LL G S+ Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGSSYSN-IQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ R +++L+ L+ + E P + + ++ K Sbjct: 176 FWDQEFVRYAEQVTEIRNHYVDSLNELLKGII-GEFLPSVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++A+ L + D + T+ GPH++DL + A S G+ K+++ + +A Sbjct: 228 TDFAELLENQYSRDLATGHTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362 +L+ I L+D++ + LD R L + +TD G+Q+F+T D + DSL+ + Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346 Query: 363 KFMRISNHQALCI 375 + + + I Sbjct: 347 RMFHVEQGRVTVI 359 >gi|313892256|ref|ZP_07825849.1| DNA replication and repair protein RecF [Dialister microaerophilus UPII 345-E] gi|313119394|gb|EFR42593.1| DNA replication and repair protein RecF [Dialister microaerophilus UPII 345-E] Length = 356 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 159/350 (45%), Gaps = 8/350 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + + RN+ ++ + D TIF G NG GKTN+LE+++ S G+ FR ++ Sbjct: 1 MKIKKFRLIQVRNFENIEIETDKNITIFTGKNGAGKTNLLESVNLASFGKSFRTNKDEEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G +I IK+ + + + +N+ I+ D L + Sbjct: 61 IKFDKNECTTILTFNSGKSN-HEIKIKISKTNGKQ---IFLNENRIKNKD-LVGIFKTVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182 P ++ G +RRRFLD + I+PR+ I+++R ++ RN L Sbjct: 116 FNPDEMQLIKGNPQKRRRFLDMEISQINPRYYYEWINYKRAVQQRNAELKNAQIRGVKPQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+A+ I R+E I L+ I + ++ L L Sbjct: 176 TDIWDMQIAKGAAYIVRKRIEAIQKLNESIEKTEERLTKNRENLKLYYIQKESKKNETNF 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E Y KL + R D +T +GPHR D++ K I+ +GS G+Q+ ++ I L+ Sbjct: 236 DVEWYIHKLLEKRHEDIKFCQTSVGPHRDDILFLLNGKDIS-KYGSQGQQRTAILSIKLS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 I TG P+LLLD++ + LD +++ LF V + Q MT T+K Sbjct: 295 EMEFIKKETGEYPVLLLDDVGSELDGERKKVLFEYVKEKDIQTIMTMTEK 344 >gi|148555709|ref|YP_001263291.1| recombination protein F [Sphingomonas wittichii RW1] gi|259563672|sp|A5VA37|RECF_SPHWW RecName: Full=DNA replication and repair protein recF gi|148500899|gb|ABQ69153.1| DNA replication and repair protein RecF [Sphingomonas wittichii RW1] Length = 356 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 135/369 (36%), Positives = 202/369 (54%), Gaps = 17/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FR+YAS + + G+NG GKTNILEA+S L PGRG R A+ A++ Sbjct: 1 MTVARLMLTDFRSYASATIAAGPGFVVLTGENGAGKTNILEAVSMLGPGRGLRGAALAEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F+ A + L + R ++IN L + L + W Sbjct: 61 AREGGAGGFAVAAELSDEVRLGTGTTP----AAPERRQVRINGAPA-SATALGEWLSLLW 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 L P+MDR+F+ + RRRFLDR+V AI+P H R + ++ MR RN+LL EG D++W Sbjct: 116 LTPAMDRLFTEGAEGRRRFLDRLVLAIEPGHARHVSRYDAAMRARNKLLAAEGPPDAAWL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++EAQ+ + G I AR + AL+ I F L++ G++ + Sbjct: 176 DALEAQLGQHGQAIAEARARTVTALALRIAAE-PDAPFARAALAIEGWVPSRRP------ 228 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 A++L GR D + RTL GPHR DL V + K A STGEQK +L+GI LAH Sbjct: 229 ---LAEELRHGRARDVAAGRTLSGPHRQDLAVSHAAKQQPAARASTGEQKALLLGIVLAH 285 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 A L++ G PILL+DE++AHLD +R ALF + G QI++TGT++++FD + E A Sbjct: 286 ADLVAERRGRRPILLMDEVAAHLDPVRRAALFERLGRSGGQIWLTGTERALFDGIGE-AT 344 Query: 364 FMRISNHQA 372 ++ + + Sbjct: 345 WLAVRAGRV 353 >gi|329962146|ref|ZP_08300157.1| DNA replication and repair protein RecF [Bacteroides fluxus YIT 12057] gi|328530794|gb|EGF57652.1| DNA replication and repair protein RecF [Bacteroides fluxus YIT 12057] Length = 369 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 154/373 (41%), Gaps = 20/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEQVELTFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R + FF E +G +I ++ R + + N + + L + Sbjct: 61 IRHEAD-FFVIQGFYEASDGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 117 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + + ++ L+ + Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFIQEFIPIFQSFYSFISQDKEQVGLSYDSHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L + R D + +L G H+ +L + D I GS G+ K L+ + LA Sbjct: 231 --TSLLEVLKESRVRDRIMGYSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLIALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V G QIF+T T++ D + Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIIKLVASDGFGQIFITDTNREHLDRILHK 347 Query: 359 -NETAKFMRISNH 370 K +R+ Sbjct: 348 VGSDYKMLRVEQG 360 >gi|305666506|ref|YP_003862793.1| DNA replication and repair protein RecF [Maribacter sp. HTCC2170] gi|88708773|gb|EAR01008.1| DNA replication and repair protein RecF, ABC family ATPase [Maribacter sp. HTCC2170] Length = 359 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 86/372 (23%), Positives = 164/372 (44%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N+ S FD++ FVG NGVGKTN L+AI LS G+G+ Sbjct: 1 MFLKKLSLINYKNFDSQTFEFDSKTNCFVGPNGVGKTNALDAIYHLSFGKGYFNPVATQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FF E + I L+ + ++ N + + L + Sbjct: 61 IKH-EEDFFVVDGEFEKFDRKEKIVCSLKRGMK---KIIKRNGKPYERLSDHIGLLPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + + S RR+F+D ++ D + + +I + +++ RN LL FD+ Sbjct: 117 ISPADRDLITEGSDTRRKFIDGVISQSDKEYLQILIKYNKVLVQRNSLLKYFVANQTFDA 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S S + Q+ G +I R++ + + E + + +++L+ D K ++ Sbjct: 177 STLSVYDEQLHNYGSEIFKKRLDFVATFIPIFKEQYAAISGGNEEVTLSY--DSKLHEN- 233 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + L + D M + T +G H+ DL I GS G+QK L+ + Sbjct: 234 -----DLLTLLATNVEKDRMLQYTSVGIHKDDLSFQIAGHPIK-KFGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVF 355 A I PILLLD+I LDE++ + +V + QIF++ T + + Sbjct: 288 FAQFHFIKKQAKATPILLLDDIFDKLDENRVAQIVGMVDNENFGQIFISDTHAERTEEIV 347 Query: 356 DSLNETAKFMRI 367 +++++ + ++ Sbjct: 348 KNIHQSYQIFKL 359 >gi|332654822|ref|ZP_08420564.1| DNA replication and repair protein RecF [Ruminococcaceae bacterium D16] gi|332516165|gb|EGJ45773.1| DNA replication and repair protein RecF [Ruminococcaceae bacterium D16] Length = 372 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 163/377 (43%), Gaps = 16/377 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + FRNYA + F + + GDN GKTN+LEAI++LS R R ++ Sbjct: 1 MKLNRLELDFFRNYAHVEATFHPRVNLIYGDNAQGKTNLLEAIAYLSSARSHRARYDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + P + ++G + + LE + R R L N + ++ EL L Sbjct: 61 IMLNEPQGY-----IKGEVDSRERTFILEAKLCRGKTRQLWSNGLRLKTAGELAGILTTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + + RRRFLD + + PR+ + + ++ RL + R+L + + S Sbjct: 116 LFCPEDLYLIREGAAARRRFLDGAICQLRPRYAQALAEYNRLYEHKTRILRDWQENPSLL 175 Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +++ +MA+ G +I R + L + +L L Sbjct: 176 DTLDDFNLRMAQFGARIIHYRAHFVRRLGEQAPAIHADFSGGREQLGLRYETVSTVQDPL 235 Query: 241 CALK---EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +++ E + R+ + SR+ L GPH+ DL+V+ D GS G+ + + Sbjct: 236 GSVQDIFESLMRHQESHRRAELDSRQCLSGPHKDDLVVEL-DGQSAKQFGSQGQTRTAAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA + TG P+LLLD++ + LD +++ + + G Q+F+T + D Sbjct: 295 SLKLAQREIFQQETGEWPVLLLDDVLSELDGKRQSFVLNRIQ--GGQVFITCCEPEKLDG 352 Query: 358 LNETAKFMRISNHQALC 374 L E K +I L Sbjct: 353 L-ERGKSFQIQGGSVLS 368 >gi|293391839|ref|ZP_06636173.1| DNA replication and repair protein RecF [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952373|gb|EFE02492.1| DNA replication and repair protein RecF [Aggregatibacter actinomycetemcomitans D7S-1] Length = 358 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 155/372 (41%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN ++ L D VG+NG GKT++LEAI +L GR F+ A V Sbjct: 1 MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + ++ + + ++IN + +L L + Sbjct: 61 ISYDQP-HFTLFGQIQEQRHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F RL++ RN L + S Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVAFYNLWASLNRLLKQRNAAL-QPTSAYSQMK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L +++ R + AL I E + P + +S++ + +Q Sbjct: 176 IWDVELVKLAEQVSQLRADYALALQPEI-EQTCRLFLPELDISVSFHQGWEKEQ------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 229 -YYAELLERNFERDRALGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + I L+D+ ++ LD+ KR L + + GSQ+F+T T + + + + Sbjct: 287 EHLMRQKQRHCIFLIDDFASELDQTKRRLLAERLQNSGSQVFVTAITSNQLKEMQPKKHR 346 Query: 364 FMRISNHQALCI 375 +I + + Sbjct: 347 TFKIDTGKIALL 358 >gi|225016756|ref|ZP_03705948.1| hypothetical protein CLOSTMETH_00668 [Clostridium methylpentosum DSM 5476] gi|224950424|gb|EEG31633.1| hypothetical protein CLOSTMETH_00668 [Clostridium methylpentosum DSM 5476] Length = 376 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 158/376 (42%), Gaps = 17/376 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI FRN + L D + G N GKTN++EAI S + FR + + Sbjct: 1 MKITEFKAHNFRNLQDIVLTPDPGINLIYGQNAQGKTNLIEAIWLFSGEKSFRGNKDSRM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + + E I+L ++ +N V + + L + Sbjct: 61 IWF-EEQFATLSLSFDDGEREQHAQIRLGEKNS-----CTLNRVEQKSLSALAGAFQCVV 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181 P+ + G RR+FLD + I P + + +ER++ RN LL E Sbjct: 115 FSPTHLAVVQGGPSLRRKFLDSAICQIRPDYHGYLGQYERVLAQRNSLLKEIARYSYLRD 174 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL---DGKFDQ 238 + Q+A+LG + I R + + + + +L L+ D D Sbjct: 175 TIEVWDRQLAKLGTIVTILRQDYVCKVEKFAKHSYAGISSDREQLGLSYQSTAFDSLLDH 234 Query: 239 SFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++ K + Y +L + D T IG HR DL + A+ +GS G+Q+ ++ Sbjct: 235 AYTQDKVDCYFSRLEESLDQDIRQGFTGIGVHRDDLELLINGLAVK-TYGSQGQQRSTIL 293 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA ARL+ + TG P++LLD++ + LD +++ L + + +Q+F+T D S Sbjct: 294 ALKLAEARLLKSITGNHPVILLDDVMSELDISRQDYLLNHIRE--NQVFITCCDSSNTLR 351 Query: 358 LNETAKFMRISNHQAL 373 L ++ + I + L Sbjct: 352 L-QSGRVFHIDGGKLL 366 >gi|160890975|ref|ZP_02071978.1| hypothetical protein BACUNI_03420 [Bacteroides uniformis ATCC 8492] gi|270294288|ref|ZP_06200490.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156859196|gb|EDO52627.1| hypothetical protein BACUNI_03420 [Bacteroides uniformis ATCC 8492] gi|270275755|gb|EFA21615.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 370 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 152/375 (40%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + FF E +G +I ++ R + + N + + L + Sbjct: 61 ICHDAD-FFVIQGFYEAADGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + + K+ L+ + Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFIREFIPIFQSFYSFISQDREKVGLSYDSHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 231 --ASLLEVLKESRARDQIMGYSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDSFGQIFITDTNREHLDRILHK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ Sbjct: 348 VGSDYKMFRVEQGTV 362 >gi|260912771|ref|ZP_05919257.1| recombination protein F [Pasteurella dagmatis ATCC 43325] gi|260633149|gb|EEX51314.1| recombination protein F [Pasteurella dagmatis ATCC 43325] Length = 358 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 157/367 (42%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I FRN ++ L FD VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLIENFRNLTAVDLEFDRGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F A+++ + ++ + + +++N + +L L + Sbjct: 61 ISYEQPHFI-LHAKIQEQNHQWSVGLQ---KLRQGNSLVKVNGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F ++ RL++ RN L + S Sbjct: 117 ITPEGLILLNGGPSYRRAFLDWGLFHHHNHFHLAWVNLNRLLKQRNAAL-QQVTHYSELE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L +++ R E AL I E + P +++S++ + D+ Sbjct: 176 IWDRELVKLAQQVSEWRKEYAEALRPEI-EQTCRLFLPELEISVSFHQGWEKDR------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 229 -DYAELLATNFERDRAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + + L+D+ ++ LDE KR L + GSQ+F+T T+ + E + Sbjct: 287 EHLMKQKQRHCLFLIDDFASELDEHKRALLAERLKQSGSQVFVTAITESQLKQMQPEKHR 346 Query: 364 FMRISNH 370 R+ N Sbjct: 347 TFRVENG 353 >gi|167031026|ref|YP_001666257.1| recombination protein F [Pseudomonas putida GB-1] gi|189039633|sp|B0KEV1|RECF_PSEPG RecName: Full=DNA replication and repair protein recF gi|166857514|gb|ABY95921.1| DNA replication and repair protein RecF [Pseudomonas putida GB-1] Length = 367 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 157/374 (41%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR + V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSSRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVDELNKHLRIS 123 + P+ + F VE EG + KL +R ++I+ R +L + L + Sbjct: 61 IQYEQPAC-TVFGEVELTEG---GTCKLGVSRERQGEFTIRIDGQNARSAAQLAELLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + E L+L+ + D+ Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAGNNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|258513370|ref|YP_003189592.1| DNA replication and repair protein RecF [Desulfotomaculum acetoxidans DSM 771] gi|257777075|gb|ACV60969.1| DNA replication and repair protein RecF [Desulfotomaculum acetoxidans DSM 771] Length = 376 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 164/353 (46%), Gaps = 14/353 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK L I+ FRNY SL + IF+GDN GKTNILEAI FL GR FR + ++ Sbjct: 1 MRIKELFINNFRNYKSLHIKPKENLNIFIGDNAQGKTNILEAICFLLQGRSFRTSHEKEI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S ++ I I L + ++IN+ EL + Sbjct: 61 INFDSEQ-SKLKTELKAYNQNYSIDISLS---RTKPKIIKINNSTTSKP-ELATNFGTIV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P I G ERRRFLD + + P+++ +++++++ RN LL E Sbjct: 116 FTPDQLSIIKGSPKERRRFLDLELASFYPQYKYYFVNYQKVLLQRNNLLKELKEKKQADT 175 Query: 181 -SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q+ G KI +AR+E++ L + + + KL++ + + Sbjct: 176 FDLLELWDNQLISYGAKILMARMEILKKLIPMAQQIHNQITSDKEKLTIRYRSSLNLNSN 235 Query: 240 FCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 F + +++ + + R+ D + +T +GPHR DL+ +K IT GS G+Q+ +++ Sbjct: 236 FREELIYDQFREVILKNRQQDYLKGQTTVGPHRDDLVFLINNKNIT-DFGSQGQQRTIIL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + A L S P+LLLD++ LD ++ +F ++ Q+F+T T Sbjct: 295 TLKFAIINLWSCELNDVPVLLLDDVFFELDSKRQKYIFDLLNK-DVQVFITST 346 >gi|152998558|ref|YP_001364239.1| recombination protein F [Shewanella baltica OS185] gi|166221863|sp|A6WH87|RECF_SHEB8 RecName: Full=DNA replication and repair protein recF gi|151363176|gb|ABS06176.1| DNA replication and repair protein RecF [Shewanella baltica OS185] Length = 360 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 163/373 (43%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI FRN S +L+ + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLTRLNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FA + G + I ++ + VR I+ ++ + L + L I Sbjct: 61 INND-DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DP + R+++ RN+LL G S+ Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHADPLFYGAWTNVRRVLKQRNQLLRNGSSYSN-IQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ R +++L+ L+ + E P + + ++ K Sbjct: 176 FWDQEFVRYAEQVTEIRNHYVDSLNELLKGII-GEFLPSVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++A+ L + D + T+ GPH++DL + A S G+ K+++ + +A Sbjct: 228 TDFAELLENQYSRDLATGHTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362 +L+ I L+D++ + LD R L + +TD G+Q+F+T D + DSL+ + Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346 Query: 363 KFMRISNHQALCI 375 + + + I Sbjct: 347 RMFHVEQGRVTVI 359 >gi|332882412|ref|ZP_08450040.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679796|gb|EGJ52765.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 365 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 163/376 (43%), Gaps = 21/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ ++N A L F + F+G NG GKTN+L+A+ FLS + + + Sbjct: 1 MILKKISVLNYKNIAQAELAFSPKMNCFIGHNGEGKTNLLDAVYFLSFCKSATNSVDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G FF E G ++ L+ + + + + + + E + + Sbjct: 61 IRHGED-FFMLQGEYEHESGEPEEVYCGLKRKQKKRFKRNK---KEYKRLSEHIGLVPVV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + SG S ERRRF+D ++ D + ++ + + ++ RN LL E D + Sbjct: 117 LVSPADADLISGGSEERRRFMDMVIVQYDHEYLDALVRYNKALQQRNVLLKQEEEPDEAL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G KI R + + ++ + + + L G+ Sbjct: 177 MGLWEEMMAQEGEKIYEKRKAYVEEFIPVFQDFYARISRGKEHVGLRYISHGQ------- 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + E + R D + +L G H+ DL + + I GS G+ K L+ + LA Sbjct: 230 -RGELLDVIRRDRAKDRIMGYSLHGVHKDDLEMTLGEFPIKRE-GSQGQNKTYLIALKLA 287 Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL-- 358 + T + P+LLLD+I LD D+ + ++V+ QIF+T T++ D + Sbjct: 288 QFDFLRRTGSRTTPLLLLDDIFDKLDADRVEQIVKLVSGEQFGQIFVTDTNREHLDRILE 347 Query: 359 --NETAKFMRISNHQA 372 +E K + N + Sbjct: 348 KTDEDYKLFYVENGEI 363 >gi|60680428|ref|YP_210572.1| putative DNA replication and repair protein [Bacteroides fragilis NCTC 9343] gi|81316502|sp|Q5LGW6|RECF_BACFN RecName: Full=DNA replication and repair protein recF gi|60491862|emb|CAH06620.1| putative DNA replication and repair protein [Bacteroides fragilis NCTC 9343] Length = 370 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 157/375 (41%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E M+G +I ++ R + + N + + + + Sbjct: 61 IRHEQD-FFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKR---NKKEYSRLSDHIGFIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I+ + + + ++ LT + Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHAR------- 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 K + L + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 230 -KASLLEVLKESRVRDKIMGYSLRGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILYK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ + Sbjct: 348 VGSDYKMFRVESGAI 362 >gi|309774993|ref|ZP_07670009.1| DNA replication and repair protein RecF [Erysipelotrichaceae bacterium 3_1_53] gi|308917247|gb|EFP62971.1| DNA replication and repair protein RecF [Erysipelotrichaceae bacterium 3_1_53] Length = 366 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 163/370 (44%), Gaps = 9/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + +FRNYA + + F I G N GKTN+LE+I +LS R R + D+ Sbjct: 1 MRLETLRLHDFRNYADINVSFSDGIHILTGKNAQGKTNLLESILYLSTTRSHRTSEDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G +FF A + + DI + + + + L I + V + Sbjct: 61 IKEGEEAFF-IKASIAKEQKTEDIRVTV----NEKGKNLFIYQNPVNRVSDFIGEFNSVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P +F RRRF+D + I ++ + RL++ RN L + D S+ Sbjct: 116 FCPDDMNLFQASPRVRRRFVDMELSKISKKYVSTLYVATRLLKERNAYLKQERVDRSYLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + AQ+ + V I R + L + ++ + +++ F + LK Sbjct: 176 VLTAQLVDASVIIIKQRHFFLEELLEKCRAFYRQLSNDDTDITVRYLSCVPFSEKEQELK 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + KK D + ++T G H+ D I + +K + +++ S G+++ VL+ + + Sbjct: 236 DALLKKYQKHLDRDLLLKQTTAGIHKEDFIFEMNNKEL-VSYASQGQKRSVLLALKIGMI 294 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 +I T P+LLLD++ + LD ++ L + + QIF++ TD + +N + Sbjct: 295 HMIHEITQEYPVLLLDDVFSELDSYRKAELLKSLPQ-EVQIFISTTDTVDMEDINSNRRV 353 Query: 365 --MRISNHQA 372 ++N Sbjct: 354 TLWYVNNGTI 363 >gi|288924856|ref|ZP_06418793.1| RecF protein [Prevotella buccae D17] gi|288338643|gb|EFC76992.1| RecF protein [Prevotella buccae D17] Length = 372 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 154/375 (41%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L+I ++N + + +G NGVGKTN L+A+ +LS R + + Sbjct: 1 MVLRKLSIVNYKNIRVANVDLSPKMNCLIGHNGVGKTNFLDAVYYLSFCRSAFNPVDSQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F G E I ++ + + + N + + + + + + Sbjct: 61 ITHGEDFFVLEGEYDTGAEDSEQIYCGMKRG---TKKHFKRNKKEYKRLSQHIGLIPLVF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 + PS + G S ERR LD ++ D + + + + ++ RN LL +G D + Sbjct: 118 VSPSDTSLIEGASEERRHLLDVVIAQYDRSYMESLAAYNKALQQRNALLKTEDGEPDETL 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E +MA G I R + + L + + Q + +SL + Sbjct: 178 MEIWEEEMARNGELIYQKRNDFVRELIPVFQDIYQHISQQREIVSLKYVSHCQRGP---- 233 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + R D +L G HR DL + D GS G+ K ++ + LA Sbjct: 234 ----LLEVIRRDRFKDRAVGYSLHGVHRDDLEM-LIDGYQLKKEGSQGQNKTFVLALKLA 288 Query: 303 HARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360 + NTT G P+LLLD+I LD + + ++V+ D QIF+T T++ D + Sbjct: 289 QFNFLKNTTSGTTPLLLLDDIFDKLDAQRVEQIVKLVSGDNFGQIFITDTNRDHLDKILH 348 Query: 361 TA----KFMRISNHQ 371 ++ K + N + Sbjct: 349 SSAMDYKIFAVENGE 363 >gi|326390361|ref|ZP_08211920.1| DNA replication and repair protein RecF [Thermoanaerobacter ethanolicus JW 200] gi|325993638|gb|EGD52071.1| DNA replication and repair protein RecF [Thermoanaerobacter ethanolicus JW 200] Length = 362 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 86/372 (23%), Positives = 160/372 (43%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRN ++ F IF G N GK+N+LE+I LS GR FR + ++ Sbjct: 1 MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G F E + + K + +++N I+ EL L Sbjct: 61 IKFGEDYFYVKAIICQENNDKKIEFGYK-----KNENKVIKVNGNKIKSTSELLGQLLTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181 P I RR++LD + ++ + ++ + +++ RN+LL + S Sbjct: 116 IFSPEDLNIIKEGPSYRRKYLDSCISVVEKNYLYNLMQYNKILINRNKLLKTIKEGKSRS 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+ E G KI + R + + I +++ + + ++ + K Sbjct: 176 ILEVFDDQLVEYGAKIIVVRQSYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +K+ +KL +D T +GPHR D + + + + S G+Q+ V + + L Sbjct: 236 IVKKRLKEKLLKNIDLDLKYLTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTVALCLKL 294 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 + ++ TG PILLLD++ + LDE+++ + + G Q F+T T K L Sbjct: 295 SEFEILKKETGEKPILLLDDVMSELDENRKKYILERLQ--GFQTFITHTTKR---DLKGD 349 Query: 362 AKFMRISNHQAL 373 + +ISN + Sbjct: 350 C-YFKISNGVVI 360 >gi|281419667|ref|ZP_06250666.1| RecF protein [Prevotella copri DSM 18205] gi|281406196|gb|EFB36876.1| RecF protein [Prevotella copri DSM 18205] Length = 405 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 154/376 (40%), Gaps = 19/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I F+N S L + +G NG+GKTN L+AI +LS R + + + Sbjct: 41 MILKNISIINFKNIKSANLELSPKINCLIGHNGMGKTNFLDAIYYLSFCRSAYNSIDSQI 100 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P FF + +G + R + + + N + + + + + Sbjct: 101 ITHDEP-FFMLEGNYDNDKGEIENVYCGMKRGTK--KHFKRNKKEYKRLSQHIGLIPLIL 157 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + PS + G S ERR+ +D ++ D + + ++ + ++ RN LL E D + Sbjct: 158 VSPSDVSLIEGGSEERRKLMDVVISQYDYSYIEALSNYNKALQQRNALLKMEEEPDITIL 217 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E QMA G + R ++ L L + Q+ + ++ L + Sbjct: 218 ELWEQQMASNGELLYQKRQAFVDELVPLFQQIYQQISGDKEQVRLHYVSHCQRGP----- 272 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + R D +L G HR DL D + GS G+ K ++ + LA Sbjct: 273 ---LLDVIQRDRFKDRAVGYSLHGVHRDDLEFLLGDYPMKRE-GSQGQNKTFVIALKLAQ 328 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + ++ P+LLLD+I LD + A+ ++V D QIF+T T++ D + Sbjct: 329 FTFLQRTSSNTLPLLLLDDIFDKLDAQRVEAIVKLVAGDHFGQIFITDTNRDHLDKILHN 388 Query: 362 AK----FMRISNHQAL 373 + + N + + Sbjct: 389 MQGDHTIFYVENGEII 404 >gi|148826361|ref|YP_001291114.1| recombination protein F [Haemophilus influenzae PittEE] gi|148716521|gb|ABQ98731.1| recombination protein F [Haemophilus influenzae PittEE] Length = 360 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 80/363 (22%), Positives = 154/363 (42%), Gaps = 15/363 (4%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A Sbjct: 9 NMAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNR 68 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 69 IISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQ 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 125 LITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-I 183 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++A+ +++ R E AL I + Q P ++++++ + + Sbjct: 184 KIWDVELAKFAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------ 236 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 237 -ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQ 294 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362 + I L+D+ ++ LD+ KR L + GSQ+F+T K + E Sbjct: 295 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 354 Query: 363 KFM 365 K + Sbjct: 355 KIV 357 >gi|330995529|ref|ZP_08319432.1| DNA replication and repair protein RecF [Paraprevotella xylaniphila YIT 11841] gi|329575309|gb|EGG56854.1| DNA replication and repair protein RecF [Paraprevotella xylaniphila YIT 11841] Length = 365 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 21/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ ++N A L F + F+G NG GKTN+L+A+ FLS + + + Sbjct: 1 MILKKISVLNYKNIAQAELAFSPKMNCFIGHNGEGKTNLLDAVYFLSFCKSATHSVDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G FF E G ++ L+ + + + + + + E + + Sbjct: 61 IRHGED-FFMLQGEYEHESGEPEEVYCGLKRKQKKRFKRNK---KEYKRLSEHIGLVPVV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + SG S ERRRF+D ++ D + ++ + R ++ RN LL E D + Sbjct: 117 LVSPADADLISGGSEERRRFMDMVIVQYDHEYLDALVRYNRALQQRNVLLKQEEEPDEAL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G KI R + + ++ + + + L G+ Sbjct: 177 IGLWEEMMAQEGEKIYEKRKAYVEEFVPVFQDFYARISRGKEHVGLRYISHGQ------- 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + + + R D + +L G H+ DL + + I GS G+ K L+ + LA Sbjct: 230 -RGDLLEVIRRDRAKDRIMGYSLHGVHKDDLEMTLGEFPIKRE-GSQGQNKTYLIALKLA 287 Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL-- 358 + T + P+LLLD+I LD D+ + ++V+ QIF+T T++ D + Sbjct: 288 QFDFLRRTGSRTTPLLLLDDIFDKLDADRVEQIVKLVSGEQFGQIFVTDTNRDHLDRILE 347 Query: 359 --NETAKFMRISNHQA 372 +E K + N + Sbjct: 348 KTDEDYKLFYVENGEI 363 >gi|315607883|ref|ZP_07882876.1| recombination protein F [Prevotella buccae ATCC 33574] gi|315250352|gb|EFU30348.1| recombination protein F [Prevotella buccae ATCC 33574] Length = 372 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 154/375 (41%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L+I ++N + + +G NGVGKTN L+A+ +LS R + + Sbjct: 1 MVLRKLSIVNYKNIRVTNVDLSPKMNCLIGHNGVGKTNFLDAVYYLSFCRSAFNPVDSQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F G E I ++ + + + N + + + + + + Sbjct: 61 ITHGEDFFVLEGEYDTGAEDSEQIYCGMKRG---TKKHFKRNKKEYKRLSQHIGLIPLVF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 + PS + G S ERR LD ++ D + + + + ++ RN LL +G D + Sbjct: 118 VSPSDTSLIEGASEERRHLLDVVIAQYDRSYMESLAAYNKALQQRNALLKTEDGEPDETL 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E +MA G I R + + L + + Q + +SL + Sbjct: 178 MEIWEEEMARNGELIYEKRNDFVRKLIPVFQDIYQHISQQREIVSLKYVSHCQRGP---- 233 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + R D +L G HR DL + D GS G+ K ++ + LA Sbjct: 234 ----LLEVIRRDRFKDRAVGYSLHGVHRDDLEM-LIDGYQLKKEGSQGQNKTFVLALKLA 288 Query: 303 HARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360 + NTT G P+LLLD+I LD + + ++V+ D QIF+T T++ D + Sbjct: 289 QFNFLKNTTSGTTPLLLLDDIFDKLDAQRVEQIVKLVSGDNFGQIFITDTNRDHLDKILH 348 Query: 361 TA----KFMRISNHQ 371 ++ K + N + Sbjct: 349 SSAMDYKIFAVENGE 363 >gi|307244804|ref|ZP_07526903.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253758|ref|ZP_07535612.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258215|ref|ZP_07539958.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854249|gb|EFM86455.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863242|gb|EFM95182.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867675|gb|EFM99520.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 360 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 150/370 (40%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + Sbjct: 1 MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F R++ + + I+ + D L+IN + +L L + Sbjct: 61 IHYQAEDF-VLHGRIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + +RL++ RN L + + Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+ ++ R + AL I + Q P +++ ++ + Sbjct: 176 PWDIELAKFAETVSQMRAKYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D T+IGP ++D + S G+ K+++ + LA Sbjct: 229 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360 + + L+D+ ++ LD KR L + + GSQ+F+T K + + E Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346 Query: 361 TAKFMRISNH 370 ++ Sbjct: 347 QDSLFQVQQG 356 >gi|218129656|ref|ZP_03458460.1| hypothetical protein BACEGG_01235 [Bacteroides eggerthii DSM 20697] gi|317477510|ref|ZP_07936735.1| DNA replication and repair protein RecF [Bacteroides eggerthii 1_2_48FAA] gi|217988386|gb|EEC54709.1| hypothetical protein BACEGG_01235 [Bacteroides eggerthii DSM 20697] gi|316906311|gb|EFV28040.1| DNA replication and repair protein RecF [Bacteroides eggerthii 1_2_48FAA] Length = 378 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 152/375 (40%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKHISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R + FF E +G +I ++ R + + N + + L + Sbjct: 61 IRHDAD-FFVIQGFYEASDGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 117 MVSPADSALINGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKNEMPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R E I + + + K+ L + Sbjct: 177 FLVWEEMMAQAGEVVFRKREEFIKEFIPIFQSFYSFISQDKEKVGLIYDSHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 231 --ASLLEVLKESRTRDQIMGFSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGATVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRILHK 347 Query: 359 -NETAKFMRISNHQA 372 K + Sbjct: 348 VGSDYKMFCVEQGAV 362 >gi|282877403|ref|ZP_06286226.1| DNA replication and repair protein RecF [Prevotella buccalis ATCC 35310] gi|281300455|gb|EFA92801.1| DNA replication and repair protein RecF [Prevotella buccalis ATCC 35310] Length = 405 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 81/375 (21%), Positives = 147/375 (39%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N L F + +G NG GKTN+L+A+ +LS R + V Sbjct: 16 MILKKISILNYKNIQVADLTFSPKLNCLIGHNGEGKTNLLDAVYYLSFCRSAFNPIDSQV 75 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + M I ++ + + + N + + + + + + Sbjct: 76 ITHDRDFFVLDGLYLNDMGDEERIYCGMKRG---TRKRFKRNQKEYKRLSQHIGLIPLIF 132 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P+ + G S RRRFLD +V +D + + + + + RN LL E DS+ Sbjct: 133 VSPADTALIDGGSDARRRFLDMVVSQLDHSYIELLSRYNKALTQRNALLKAEQEPDSALM 192 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E +MA G I R + + + H +SL + Sbjct: 193 EILEQEMATQGEAIYAKRDAFVREFIPVFQTIYDHVSGCHETVSLQYISHAQRGP----- 247 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + R D +L G HR DL + + GS G+ K ++ + LA Sbjct: 248 ---LLDVIQRDRHKDRAVGYSLHGVHRDDLEMMIGGYQLKRE-GSQGQNKTYVLALKLAQ 303 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + + P+LLLD+I LD + + +V D QIF+T T++ DS+ Sbjct: 304 FDFLKRTASSTTPLLLLDDIFDKLDAGRVERIVNMVAGDAYGQIFITDTNRDHLDSILRR 363 Query: 362 ----AKFMRISNHQA 372 K +++ + Sbjct: 364 HSFDYKLFEVAHGEI 378 >gi|306834801|ref|ZP_07467865.1| recombination protein F [Corynebacterium accolens ATCC 49726] gi|304569329|gb|EFM44830.1| recombination protein F [Corynebacterium accolens ATCC 49726] Length = 397 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 96/377 (25%), Positives = 168/377 (44%), Gaps = 27/377 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L++ +FR++ L+L T+FVG NG GKTNI+EA+ + + R + + + Sbjct: 1 MFIRDLDVRDFRSWPELKLELGPGITLFVGRNGFGKTNIVEAVGYTAHLSSHRVSHDSPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ S S A +G E + IK + QIN +R EL ++ Sbjct: 61 VRQGAQSARVSLTAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176 P + G RR +LD ++ + PR D++++++ RN LL G Sbjct: 116 LFSPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRG 175 Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228 Y DS S + +AQ+A LG ++ AR+ +++AL I + Sbjct: 176 YGDSDGASALSTLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYAGLAPESRPAHVEY 235 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 +D + A+ +L + R+ + +L+GPHR DL++ D+ S Sbjct: 236 KSTIDTSDREVLEAV---MLTELANARQREIERGISLVGPHRDDLVLHLGDQPAK-GFAS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G P+L+LD++ A LD +R L + Q+ +T Sbjct: 292 HGETWSYAIALRLAEFELLREEGGSDPVLILDDVFAELDAKRRTQLVH-LAATAEQVLIT 350 Query: 349 -GTDKSVFDSLNETAKF 364 D+ + D+L ++ Sbjct: 351 AAVDEDLPDNLEPIVRY 367 >gi|189462141|ref|ZP_03010926.1| hypothetical protein BACCOP_02823 [Bacteroides coprocola DSM 17136] gi|189431114|gb|EDV00099.1| hypothetical protein BACCOP_02823 [Bacteroides coprocola DSM 17136] Length = 373 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 155/374 (41%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + + F + +G NG+GKTN+L+A+ +LS + A + Sbjct: 1 MWLKRISILNYKNLEQVEVAFSRKMNCIIGKNGMGKTNLLDAVYYLSFCKSATNAIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 FF E EG ++ L+ R + + N + + + + Sbjct: 61 ILHDRD-FFVVQGFYETDEGEPEEVYCGLKRRQKKQFKR---NKKEYSRLSDHIGLIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 117 MVSPADSWLIAGGSEERRRFIDVVISQFDREYLEALIRYNKALLQRNSLLKADVEPEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA G + R I+ + Y + ++SL+ A Sbjct: 177 MLVWEEMMAASGETVYAKRKAFIDEFIPVFQSYYSYISQDREQVSLSY--------ESHA 228 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 K ++L + R+ D + + G H+ DLI+ D I GS G+ K L+ + LA Sbjct: 229 AKGNLLEQLKEVRQRDRILGYSTRGIHKDDLIMQLGDFPIKRE-GSQGQNKTYLIALKLA 287 Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD---- 356 + T + PI+LLD+I LD + + ++V D QIF+T T++ D Sbjct: 288 QFEFLKRTGSRTTPIVLLDDIFDKLDASRVEQIVKLVAGDSFGQIFVTDTNRDHLDKILR 347 Query: 357 SLNETAKFMRISNH 370 + K + Sbjct: 348 KIEGDYKLFEVDGG 361 >gi|148262088|ref|YP_001228794.1| recombination protein F [Geobacter uraniireducens Rf4] gi|189039625|sp|A5GDX3|RECF_GEOUR RecName: Full=DNA replication and repair protein recF gi|146395588|gb|ABQ24221.1| DNA replication and repair protein RecF [Geobacter uraniireducens Rf4] Length = 364 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 166/371 (44%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + + FRN + L + IF G N GKTN+LE+I L + F+ A +++ Sbjct: 1 MKLNKIYLLSFRNLEKIELTPAHRFNIFYGKNAQGKTNLLESIFLLGTMKSFKMAKNSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS + ++G ++ ++ D+ + ++++ + VDE +L + Sbjct: 61 VRWGSDQ-----SLIKGWVERDGVTREIALFIDKQGKKIKLDRKSVTKVDEFFGNLNVVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G+ RR++LDR VF+ D + D+ ++++ RN LL G + S Sbjct: 116 FTPEEINMVRGVPDLRRKYLDRAVFSSDVTYLHAYHDYCKILKNRNILLKSG--EKSGLD 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++AE G K+ R++ ++ + L+ ++ + + + +++ Sbjct: 174 VWTEKLAEYGRKVINKRLDYLHEIQELLSKFYNDISGTEEVVEIRYRPHLMDMENYEKDN 233 Query: 245 -EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ L + TL+GPHR D+ +A+ GS G+Q+ ++ + ++ Sbjct: 234 CGALSEALVKCAAEEQRRGTTLVGPHRDDIDFVLNGRALK-QFGSQGQQRSYVLALKMSE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362 + PILLLD++++ LD+D+ L + Q+F+T T E Sbjct: 293 IDCLHQKFDSPPILLLDDMTSELDQDRNRNLMEFLKKKEMQVFITTTSLQNISLEGIENH 352 Query: 363 KFMRISNHQAL 373 + +S + L Sbjct: 353 RTFLVSEGKVL 363 >gi|165975460|ref|YP_001651053.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226737765|sp|B0BRG1|RECF_ACTPJ RecName: Full=DNA replication and repair protein recF gi|165875561|gb|ABY68609.1| DNA replication and repair protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 360 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 151/370 (40%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + Sbjct: 1 MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F AR++ + + I+ + D L+IN + +L L + Sbjct: 61 IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + +RL++ RN L + + Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L ++ R AL I + Q P +++ ++ + Sbjct: 176 PWDIELAKLAEIVSQMRASYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D T+IGP ++D + S G+ K+++ + LA Sbjct: 229 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360 + + L+D+ ++ LD KR L + + GSQ+F+T K + + E Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346 Query: 361 TAKFMRISNH 370 ++ Sbjct: 347 QDSLFQVQQG 356 >gi|311741697|ref|ZP_07715519.1| recombination protein F [Corynebacterium pseudogenitalium ATCC 33035] gi|311303218|gb|EFQ79299.1| recombination protein F [Corynebacterium pseudogenitalium ATCC 33035] Length = 391 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 164/380 (43%), Gaps = 26/380 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FR++ L + T+FVG NG GKTNI+EAI + + R + A + Sbjct: 1 MYVRDLDVRDFRSWPELNVQLGPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVSHDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ S S A +G E + IK + QIN +R EL ++ Sbjct: 61 VRQGADSARVSITAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176 P + G RR +LD ++ + PR D++++++ RN LL G Sbjct: 116 LFSPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASGSLRRG 175 Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228 Y DS + + +AQ+A LG ++ AR+ +++AL I + Sbjct: 176 YSDSDGAAALATLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYSGLAPESRPAHVEY 235 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 +D + A+ +L R+ + +L+GPHR DL+++ D+ S Sbjct: 236 KSTIDTSDREVLEAV---LLTELAAARQREIERGISLVGPHRDDLVLNLGDQPAK-GFAS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G P+L+LD++ A LD +R L + + Q+ +T Sbjct: 292 HGETWSYAIALRLAEFNLLRQEGGSDPVLILDDVFAELDAKRRKQLVHLAAEAE-QVLIT 350 Query: 349 GTDKSVFDSLNETAKFMRIS 368 E R+S Sbjct: 351 AAVDEDLPGNLEPIVRYRVS 370 >gi|145294046|ref|YP_001136867.1| recombination protein F [Corynebacterium glutamicum R] gi|166220708|sp|A4Q9S2|RECF_CORGB RecName: Full=DNA replication and repair protein recF gi|140843966|dbj|BAF52965.1| hypothetical protein [Corynebacterium glutamicum R] Length = 394 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 97/388 (25%), Positives = 171/388 (44%), Gaps = 31/388 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + ++R++ L++ + T+F+G NG GKTNI+EAI +L+ R +S A + Sbjct: 1 MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R + + S A +G E A + IK + +N +R EL ++ Sbjct: 61 VRAHAENARVSAVAVNQGRELAAHLLIK-----PHAANQASLNRTKVRTPRELLGVVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174 P + G ERRR+LD ++ PR D++++++ RN LL Sbjct: 116 LFAPEDLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQRNALLKTATIALRRG 175 Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV---QKENFPHI--- 224 EG S + + Q+A LG ++ AR ++N L I E E+ P Sbjct: 176 YGTEEGAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNY 235 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 K ++ L + ++ +L R+ + +L+GPHR D+ + D+ Sbjct: 236 KTTIDQGLSQFSEFDAGIIEATLLTELAAKRQREIERGSSLVGPHRDDVDLMLGDQPAK- 294 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 S GE + + +A L+ + PIL+LD++ + LD +R L I ++ Q Sbjct: 295 GFASHGETWSFALSLRIAEFNLLK-SDDTDPILILDDVFSELDAGRRQKLVGIAQEVE-Q 352 Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372 + +T +V D L E K + + H Sbjct: 353 VLITA---AVHDDLPENLKKVLTAQHTV 377 >gi|167765194|ref|ZP_02437307.1| hypothetical protein BACSTE_03580 [Bacteroides stercoris ATCC 43183] gi|167696822|gb|EDS13401.1| hypothetical protein BACSTE_03580 [Bacteroides stercoris ATCC 43183] Length = 378 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 153/375 (40%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R S FF E +G +I ++ R + + N + + L + Sbjct: 61 IRHDSD-FFVIQGFYEAADGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + SG S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 117 MVSPADSVLISGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSEMPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R E I + + + K+ LT + Sbjct: 177 FLVWEEMMAQAGEVVFHKREEFIREFIPIFQSFYSFISQDKEKVGLTYDSHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 231 --ASLLAVLKENRMRDQIMGFSLRGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRILHK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ Sbjct: 348 VGSDYKMFRVEKGNI 362 >gi|134096624|ref|YP_001102285.1| recombination protein F [Saccharopolyspora erythraea NRRL 2338] gi|291005722|ref|ZP_06563695.1| recombination protein F [Saccharopolyspora erythraea NRRL 2338] gi|166221860|sp|A4F5N5|RECF_SACEN RecName: Full=DNA replication and repair protein recF gi|133909247|emb|CAL99359.1| DNA replication and repair protein [Saccharopolyspora erythraea NRRL 2338] Length = 391 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 86/396 (21%), Positives = 162/396 (40%), Gaps = 37/396 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR++ L F+ T+ VG NG GKTN++EA+ +++ R A+ A + Sbjct: 1 MYVRHLQVTDFRSWPHADLTFEPGPTVLVGSNGQGKTNLVEALGYVATLGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A V ++ ++LE ++ R + D L LR Sbjct: 61 VRYGTQRAVVRAAVVN---HGRELLVELEITPGKANRARINRGAAGKPRDVL-GILRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR+ D++R++R R+ LL Sbjct: 117 FAPEDMAMVRGDPGERRRFLDDLLVARAPRYAGVRSDYDRVLRQRSALLKSAGAAKRGGS 176 Query: 179 --DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK---------LS 227 D + +A G ++ R++++ A++ + + + Sbjct: 177 GGDLRTLEVWDGHLARYGAELLAGRLDLVAAIAPHVTSAYANVAATAEETAPSGRVADVR 236 Query: 228 LTGFLDGKFDQSF----------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 L + + L++ +L R + +L+GPHR DL + Sbjct: 237 YRSSLGESLPEGYGVPRGEPADVEVLEKALLAELERVRAQELERGVSLVGPHRDDLELML 296 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + + S GE + + LA L++ G P+L+LD++ A LD +R+ L + Sbjct: 297 GELPAK-GYASHGESWSFALALRLASYHLLAE-DGAEPVLILDDVFAELDRRRRSRLAEL 354 Query: 338 VTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372 V Q+ +T + V + L T + + Sbjct: 355 VAGAE-QVLVTAAVAEDVPEEL--TGVRFDVREGEV 387 >gi|325851995|ref|ZP_08171078.1| DNA replication and repair protein RecF [Prevotella denticola CRIS 18C-A] gi|325484551|gb|EGC87467.1| DNA replication and repair protein RecF [Prevotella denticola CRIS 18C-A] Length = 368 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 156/375 (41%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L + F+G NG GKTN+L+A+ +LS + ++V Sbjct: 1 MQLDRLSIINYKNIQTATLNLSGKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + FF G + R + + + N R + + L + + Sbjct: 61 MRHDAD-FFVLEGDYTTDTGEQEQVYCGMKRGAK--KHFKRNKKEYRRLSQHIGRLPLIF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P+ + G S ERRR +D ++ D + + + + ++ RN LL E D + Sbjct: 118 VSPADATLIEGGSEERRRLMDVVISQYDTPYIESLGRYNKALQQRNSLLKQEEEPDPTLM 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QMAE G + R + L+ Q + ++SL + Sbjct: 178 ELLEMQMAEHGEAVYRKRAAFVQELTPCFRRIYQTISNNREQVSLEYVSHCQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + R D + +L G H+ DL++ + GS G+ K ++ + LA Sbjct: 230 RGSLLDIIQRDRVKDRIMGFSLHGTHKDDLMMKLGGYPMKRE-GSQGQNKTYVLALKLAQ 288 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + G P+LLLD+I LD + + R+V+ D QIF+T T++ D + + Sbjct: 289 FDFLRRTAGGRTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIFITDTNREHLDKILQG 348 Query: 362 A----KFMRISNHQA 372 + K + + Sbjct: 349 SGFSYKLFSVEGGEI 363 >gi|330827703|ref|YP_004390655.1| DNA replication and repair protein recF [Aeromonas veronii B565] gi|328802839|gb|AEB48038.1| DNA replication and repair protein recF [Aeromonas veronii B565] Length = 367 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 90/370 (24%), Positives = 153/370 (41%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S+FRN L I VG NG GKT++LEAI +L GR FR V Sbjct: 1 MSLVKLQLSDFRNIQQASLKLSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F+ FA+ E I + +D L+I + + +L + L + Sbjct: 61 IRQG-ERAFTLFAQCELEGRQVPIGL---AKDKSGETQLKIAGAQAQRLADLVELLPVQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR +LD VF +P RL++ RN LL + + Sbjct: 117 IHPDGFNLLTGGPQARRAWLDWGVFHQEPTFFALWGRVRRLLKQRNALLRQST-QYRQLA 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ LG ++ R A++ LI E + P +SL + + D L Sbjct: 176 FWDQELVRLGGELAEFRASYCQAITPLIKEMTA-DFLPEFDISLGFYRGWEKDTPLGDL- 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L G + D T +GP ++D+ + + S G+ K+++ + LA Sbjct: 234 ------LEAGFERDRALGYTGVGPQKADVRLK-ANGVPAQDILSRGQLKLLVCAMRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--TA 362 ++ + I L+D+ ++ LD DKR L + SQ+F+T D + + Sbjct: 287 LYLNQHSSRGCIFLIDDFASELDVDKRRLLAARLKQCASQVFITAIDTGQLADMMDANDC 346 Query: 363 KFMRISNHQA 372 K + + Sbjct: 347 KLFHVEQGKI 356 >gi|237801662|ref|ZP_04590123.1| recombination protein F [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024521|gb|EGI04577.1| recombination protein F [Pseudomonas syringae pv. oryzae str. 1_6] Length = 367 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + RD + ++I+ R +L + L + Sbjct: 61 IQYDQPSC-TVFGQVDLAQGGHSNLGV---ARDRQGDFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDVASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ + +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCQASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LDE R AL R++ ++ Q+F+T D+ + Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDEHHRQALCRLLEELRCQVFITCVDQEFLREGWQTDT 347 Query: 361 TAKFMRISNHQALC 374 + + + Sbjct: 348 PVALFHVEHGRITQ 361 >gi|53712250|ref|YP_098242.1| DNA replication and repair protein RecF [Bacteroides fragilis YCH46] gi|253563714|ref|ZP_04841171.1| DNA replication and repair protein recF [Bacteroides sp. 3_2_5] gi|265762438|ref|ZP_06091006.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_16] gi|81690735|sp|Q64XR8|RECF_BACFR RecName: Full=DNA replication and repair protein recF gi|52215115|dbj|BAD47708.1| DNA replication and repair protein RecF [Bacteroides fragilis YCH46] gi|251947490|gb|EES87772.1| DNA replication and repair protein recF [Bacteroides sp. 3_2_5] gi|263255046|gb|EEZ26392.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_16] Length = 370 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 88/375 (23%), Positives = 156/375 (41%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E M+G +I ++ R + + N + + + + Sbjct: 61 IRHEQD-FFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKR---NKKEYSRLSDHIGFIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I+ + + + ++ LT + Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHAR------- 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 230 -NASLLEVLKESRVRDKIMGYSLRGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILYK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ + Sbjct: 348 VGSDYKMFRVESGAI 362 >gi|330961507|gb|EGH61767.1| recombination protein F [Pseudomonas syringae pv. maculicola str. ES4326] Length = 367 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 162/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + P+ + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPAC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPMQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCLASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLNRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LDE R AL R++ ++ Q+F+T D+ + Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDEHHRQALCRLLEELRCQVFITCVDQEFLREGWQTDT 347 Query: 361 TAKFMRISNHQALC 374 + + + Sbjct: 348 PVALFHVEHGRITQ 361 >gi|261868625|ref|YP_003256547.1| recombination protein F [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413957|gb|ACX83328.1| DNA replication and repair protein RecF [Aggregatibacter actinomycetemcomitans D11S-1] Length = 358 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 157/372 (42%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN ++ L D VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDQP-HFTLFGQIQEQQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F RL++ RN L + Y S Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVAFYNLWASLNRLLKQRNAALQQTYA-YSQMK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L +++ R + AL I E + P + +S++ + +Q Sbjct: 176 IWDMELVKLAEQVSQLRADYALALQPEI-EQTCRLFLPELDISVSFHQGWEKEQ------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA+ L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 229 -HYAELLERNFERDRALGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMSALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + I L+D+ ++ LD+ KR L + + GSQ+F+T T + + + + Sbjct: 287 EHLMRQKQRHCIFLIDDFASELDQTKRRLLAERLQNSGSQVFVTAITSNQLKEMQPKKHR 346 Query: 364 FMRISNHQALCI 375 +I + + Sbjct: 347 TFKIDTGKIALL 358 >gi|329121617|ref|ZP_08250238.1| recombination protein F [Dialister micraerophilus DSM 19965] gi|327468772|gb|EGF14249.1| recombination protein F [Dialister micraerophilus DSM 19965] Length = 356 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 8/350 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + + RN+ ++ + D TIF G NG GKTN+LE+++ S G+ FR ++ Sbjct: 1 MKIKKFRLIQVRNFENIEIETDKNITIFTGKNGAGKTNLLESVNLASFGKSFRTNKDEEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G +I IK+ + + + +N+ I+ D L + Sbjct: 61 IKFDKNECTTILTFNSGKSN-HEIKIKISKTNGKQ---IFLNENRIKNKD-LVGIFKTVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182 P ++ G +RRRFLD + I+PR+ I+++R ++ RN L Sbjct: 116 FNPDEMQLIKGNPQKRRRFLDMEISQINPRYYYEWINYKRAVQQRNAELKNAQIRGIKPQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+A+ I R+E I L+ I + + L L Sbjct: 176 TDLWDMQIAKGAAYIVRKRIEAIQKLNESIEKTEEILTKNRENLKLYYIQKESKKNETNF 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E Y KL + R++D +T +GPHR D++ K I+ +GS G+Q+ ++ I L+ Sbjct: 236 DVEWYIHKLLEKRQVDIKFCQTSVGPHRDDILFLLNGKDIS-KYGSQGQQRTAILSIKLS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 I TG P+LLLD++ + LD +++ LF V + Q MT T+K Sbjct: 295 EMEFIKKETGEYPVLLLDDVGSELDRERKKVLFEYVKEKDIQTIMTMTEK 344 >gi|329957035|ref|ZP_08297603.1| DNA replication and repair protein RecF [Bacteroides clarus YIT 12056] gi|328523792|gb|EGF50884.1| DNA replication and repair protein RecF [Bacteroides clarus YIT 12056] Length = 422 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 154/376 (40%), Gaps = 20/376 (5%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + +K ++I ++N + L F + F G NG+GKTN+L+A+ FLS + + Sbjct: 44 HMILKRISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQ 103 Query: 64 VTRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R + FF E +G +I ++ R + + N + + L + Sbjct: 104 NIRHDAD-FFVIQGFYEAADGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPL 159 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSS 181 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 160 VMVSPADSALINGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSETPVEEE 219 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 E MA+ G + R E I + + + K+ LT + Sbjct: 220 LFLVWEEMMAQAGEVVFRKREEFIREFIPIFQSFYSFISQDKEKVGLTYDSHARD----- 274 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + L + R D + +L G H+ +L + D I GS G+ K LV + L Sbjct: 275 ---ASLLEVLKESRTRDQIMGFSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKL 330 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL-- 358 A + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 331 AQFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRILH 390 Query: 359 --NETAKFMRISNHQA 372 K R+ Sbjct: 391 KVGSDYKMFRVEKGAV 406 >gi|227502244|ref|ZP_03932293.1| recombination protein F [Corynebacterium accolens ATCC 49725] gi|227077068|gb|EEI15031.1| recombination protein F [Corynebacterium accolens ATCC 49725] Length = 396 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 95/377 (25%), Positives = 167/377 (44%), Gaps = 27/377 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L++ +FR++ L+L T+FVG NG GKTNI+EA+ + + R + + + Sbjct: 1 MFIRDLDVRDFRSWPELKLELGPGITLFVGRNGFGKTNIVEAVGYTAHLSSHRVSHDSPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ S S A +G E + I+ + QIN +R EL ++ Sbjct: 61 VRQGAQSARVSLTAVNQGRELTTHLLIQ-----PHAANQAQINRTRLRSPRELLGVVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176 P + G RR +LD ++ + PR D++++++ RN LL G Sbjct: 116 LFSPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRG 175 Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228 Y DS S + +AQ+A LG ++ AR+ +++AL I + Sbjct: 176 YGDSDGASALSTLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYAGLAPESRPAHVEY 235 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 +D + A+ +L R+ + +L+GPHR DL++ D+ S Sbjct: 236 KSTIDTSDREVLEAV---MLTELASARQREIERGISLVGPHRDDLVLHLGDQPAK-GFAS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G P+L+LD++ A LD +R L + Q+ +T Sbjct: 292 HGETWSYAIALRLAEFELLREEGGSDPVLILDDVFAELDAKRRTQLVH-LAATAEQVLIT 350 Query: 349 -GTDKSVFDSLNETAKF 364 D+ + D+L ++ Sbjct: 351 AAVDEDLPDNLEPIVRY 367 >gi|301161961|emb|CBW21505.1| putative DNA replication and repair protein [Bacteroides fragilis 638R] Length = 370 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 88/375 (23%), Positives = 156/375 (41%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E M+G +I ++ R + + N + + + + Sbjct: 61 IRHEQD-FFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKR---NKKEYSRLSDHIGFIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I+ + + + ++ LT + Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHAR------- 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 230 -NASLLEVLQESRVRDKIMGYSLRGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILYK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ + Sbjct: 348 VGSDYKMFRVESGAI 362 >gi|313900878|ref|ZP_07834368.1| DNA replication and repair protein RecF [Clostridium sp. HGF2] gi|312954298|gb|EFR35976.1| DNA replication and repair protein RecF [Clostridium sp. HGF2] Length = 366 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 159/370 (42%), Gaps = 9/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + FRNYA + + F I G N GKTN+LE+I +LS R R + D+ Sbjct: 1 MRLESLRLHNFRNYADVNVSFTDGIHILTGKNAQGKTNLLESILYLSTTRSHRTSEDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G +FF A + + +I + + + + L I + V + Sbjct: 61 IKEGEQAFF-IKALIAKEQKTEEIRVTV----NEKGKNLFIYQNPVNRVSDFIGEFNSVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P +F RRRF+D + I ++ + RL++ RN L + D S+ Sbjct: 116 FCPDDMNLFQASPRVRRRFVDMELSKISKKYVSTLYVATRLLKERNAYLKQERVDRSYLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +Q+ + V I R + L + ++ + +++ F S ALK Sbjct: 176 VLTSQLVDASVVIMKQRHFFLEELLDKCRTFYRQLSNDDTDITVRYLSCVPFSDSEEALK 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E KK + D + ++T G H+ D I + + ++ S G+++ VL+ + + Sbjct: 236 EALLKKYQKHQDRDLLLKQTTAGIHKEDFIFEMNGHEL-VSFASQGQKRSVLLALKIGMI 294 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL--NETA 362 +I P+LLLD++ + LD ++ L + + QIF++ TD D + + Sbjct: 295 HMIHEIIQEYPVLLLDDVFSELDSYRKQELLKSLPK-EVQIFISTTDFVEMDDMKSDRRV 353 Query: 363 KFMRISNHQA 372 +SN Sbjct: 354 TLWNVSNGTI 363 >gi|333030065|ref|ZP_08458126.1| DNA replication and repair protein recF [Bacteroides coprosuis DSM 18011] gi|332740662|gb|EGJ71144.1| DNA replication and repair protein recF [Bacteroides coprosuis DSM 18011] Length = 372 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 161/378 (42%), Gaps = 20/378 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I +++ ++N + L F + F+G+NG+GKTNIL+ I +LS + + Sbjct: 1 MVITHISVLNYKNLEEVELEFSPKLNCFLGENGMGKTNILDTIYYLSFCKSSINPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G FF + + G ++ L+ R + + + + + + + Sbjct: 61 IKHGED-FFVIQGFYDSLSGEIEEVYCGLKRRKKKQFKRNK---KEYTRLSDHIGLVPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P R+ G S ERR+F+D ++ D + +I + + M+ RN LL E D Sbjct: 117 MVSPDDARLIDGGSDERRKFMDMVISQYDKDYLSALIQYNKAMQQRNSLLKSENPIDPQL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S +E MAE G+ + R + I L EY + +SL+ D K Sbjct: 177 FSVLEELMAESGIVVYKKRAQFIEEFIPLFQEYYSSISQDKESVSLSYDSDLK------- 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + L + R D + +L G H+ DLI+ D +I GS G+ K LV + LA Sbjct: 230 -ENDLLTLLKESRARDLIMGYSLKGIHKDDLIMSLGDFSIK-KEGSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + P+LLLD+I LD + + +V + QIF+T T++S + + Sbjct: 288 QFSFLRKINNKTPLLLLDDIFDKLDALRVEQIMHLVAGEEFGQIFITDTNRSHLEKILHK 347 Query: 362 ----AKFMRISNHQALCI 375 K + + Sbjct: 348 VKSDYKLFMVKGGAVDLL 365 >gi|330898606|gb|EGH30025.1| recombination protein F [Pseudomonas syringae pv. japonica str. M301072PT] Length = 367 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 162/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 F + + Sbjct: 348 PVAFFHVEQGRITQ 361 >gi|327312442|ref|YP_004327879.1| DNA replication and repair protein RecF [Prevotella denticola F0289] gi|326946310|gb|AEA22195.1| DNA replication and repair protein RecF [Prevotella denticola F0289] Length = 368 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 158/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+I ++N + L A+ F+G NG GKTN+L+A+ +LS + ++V Sbjct: 1 MQLDRLSIINYKNIQTATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + FF G + R + + + N R + + L + + Sbjct: 61 MRHDAD-FFVLEGDYTTDTGEQEQVYCGMKRGAK--KHFKRNKKEYRRLSQHIGRLPLIF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P+ + G S ERRR +D ++ D + + + + ++ RN LL E D + Sbjct: 118 VSPADATLIEGGSEERRRLMDVVISQYDTPYIESLGRYNKALQQRNSLLKQEEEPDPTLM 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QMAE G + R + L+ + Q + ++SL + Sbjct: 178 ELLEMQMAEHGEAVYRKRAAFVQELTPVFRRIYQTISNNREQVSLEYVSHCQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + R D + +L G H+ DL++ + GS G+ K ++ + LA Sbjct: 230 RGSLLDIIQRDRVKDRIMGFSLHGTHKDDLMMKLGGYPMKRE-GSQGQNKTYVLALKLAQ 288 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + G P+LLLD+I LD + + R+V+ D QIF+T T++ D + + Sbjct: 289 FDFLCRTAGGRTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIFITDTNREHLDKILQG 348 Query: 362 A----KFMRISNHQA 372 + K + + Sbjct: 349 SGFSYKLFSVEGGEI 363 >gi|197106846|ref|YP_002132223.1| recombinational DNA repair ATPase [Phenylobacterium zucineum HLK1] gi|196480266|gb|ACG79794.1| recombinational DNA repair ATPase [Phenylobacterium zucineum HLK1] Length = 377 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 136/374 (36%), Positives = 207/374 (55%), Gaps = 10/374 (2%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R + L++++FR+YAS L D + G NG GKTN+LEA+SFL PGRG R AS A+ Sbjct: 2 RTALTRLSLTDFRSYASAELALDGRPVWLAGPNGSGKTNLLEAVSFLIPGRGLRGASIAE 61 Query: 64 VTRI--GSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 V R G ++ A V + +E + S R ++++ L +H Sbjct: 62 VGRRLPGETVGRAWAVSATVAAAGDEVRLGTGVE-QPGASRRVVRVDGEPA-PPGRLAEH 119 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 +R WL P+ DR+F + ERRRFLDR+VFA +P H + +E+ MR R RLLTEG D Sbjct: 120 MRQVWLTPAQDRLFLEGAGERRRFLDRLVFAAEPGHAAHVQAYEKAMRERMRLLTEGPAD 179 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238 +W ++EA++AE G + +R + AL++ I ++ FP +LSLTG + + Sbjct: 180 PTWLDALEARLAEAGALMADSRSRTLAALAAEIGARGER-PFPQARLSLTGAWEQMAAEG 238 Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++ A+ L + R D+ + R L GPHR DL V + +K A STGEQK +++ Sbjct: 239 AGIADVEARLARALREARDRDAAAGRALTGPHRGDLAVVHAEKDRAAAECSTGEQKALIL 298 Query: 298 GIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + LA A ++ P+LLLDE++AHLD +R ALF + +G Q F+TGTD+ +F+ Sbjct: 299 NLVLAQAARLARADSAPAPVLLLDEVAAHLDRVRRAALFDEIEALGLQAFLTGTDEHLFE 358 Query: 357 SLNETAKFMRISNH 370 +L + R+ Sbjct: 359 ALAGRGQGWRMDAG 372 >gi|99079844|ref|YP_611998.1| recombination protein F [Ruegeria sp. TM1040] gi|99036124|gb|ABF62736.1| DNA replication and repair protein RecF [Ruegeria sp. TM1040] Length = 357 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 132/357 (36%), Positives = 193/357 (54%), Gaps = 11/357 (3%) Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 S FR++ L D + G+NG GKTNILEA+S SPGRG RRAS AD+ R Sbjct: 2 SHFRSHLRADLHLDTRPVAIHGNNGAGKTNILEAVSLFSPGRGLRRASAADMARQPEALG 61 Query: 73 FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 + ++ ++ E + R V+ D L + R+ WLVP+MDR+ Sbjct: 62 WKLRGVLQSSGQAYEVETSSEVGNARQVKI----DNKSASQVALGRIARVVWLVPAMDRL 117 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 + + RRRFLDR+ + DP H + +E+ MR RNRLL + D++W +E QMAE Sbjct: 118 WIEGAEGRRRFLDRIALSFDPDHAEASLSYEKAMRERNRLLKDNVRDAAWYRVLEGQMAE 177 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252 G +I+ AR++ + L++ + + FP +L L + + A E + L Sbjct: 178 TGFRIHQARMDAVARLTA--AQAEAETAFPVAQLQL-----VQAEGDMPASAEALREMLD 230 Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312 GR D RTL+GPHRSDLI + K + STGEQK +LV + LA+AR + G Sbjct: 231 AGRMRDLTVGRTLVGPHRSDLIGTFLAKGLPAKDCSTGEQKALLVSLILANARALQAQEG 290 Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 APILLLDE++AHLD +R AL+ + +G+Q +MTGT +F L A+ + +S+ Sbjct: 291 AAPILLLDEVAAHLDAGRRAALYDEICALGTQAWMTGTGPELFQELGSRAQHLTVSD 347 >gi|222053120|ref|YP_002535482.1| DNA replication and repair protein RecF [Geobacter sp. FRC-32] gi|254790478|sp|B9M7S3|RECF_GEOSF RecName: Full=DNA replication and repair protein recF gi|221562409|gb|ACM18381.1| DNA replication and repair protein RecF [Geobacter sp. FRC-32] Length = 364 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 167/371 (45%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + + FRN L+ IF G+NG GKTN+LE+I ++ + F+ A +D+ Sbjct: 1 MKLNKIYLQSFRNLQETMLMPAQHFNIFYGNNGQGKTNLLESIFIMATMKSFKTARSSDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + ++G ++ ++ D + ++++ + +D+ HL + Sbjct: 61 VRWGA-----ISSLLKGWVERDGVTREIAVFLDNQGKKIRVDQKAVTRIDDFFGHLNVVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + GL RR++LDR VF+ D + + ++++ RN LL G + + Sbjct: 116 FTPEEVNMVKGLPELRRKYLDRAVFSSDITYLSVYHAYSKILKNRNMLLKRG--EKASFD 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-LDGKFDQSFCAL 243 ++ E G I ++R+ ++AL L+ + ++ + + ++ + Sbjct: 174 IWTEKLVEQGKNIILSRLAYLDALRDLLKRFYREISGNEEAVDISYRPYHMDLADCRGDV 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + +A+ L + TL GPHR D+ + + GS G+QK ++ + +A Sbjct: 234 ADAFAEALAKTATEEERRGTTLAGPHRDDVEFILNGRPLK-QFGSQGQQKSYVLALKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETA 362 + PI LLD++S+ LD++++ L + Q+F+T T + E Sbjct: 293 TEYLQKKFHSQPIFLLDDLSSELDQERKKNLMEFLKKRDMQVFITTTSLQNINVDEIENY 352 Query: 363 KFMRISNHQAL 373 + RI + L Sbjct: 353 RTYRIEEGKVL 363 >gi|327482927|gb|AEA77334.1| DNA recombination and repair protein RecF [Vibrio cholerae LMA3894-4] Length = 357 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 81/361 (22%), Positives = 151/361 (41%), Gaps = 12/361 (3%) Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71 I +FRN + + A +G NG GKT++LEAI L GR F+ + + + Sbjct: 2 IQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNECSE 61 Query: 72 FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130 F E + + R ++I + + +L + L + + P Sbjct: 62 LFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQLIHPEGF 121 Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190 + + +RR F+D VF +P F+RL + RN LL S + ++ Sbjct: 122 ELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-LSYWDQEL 180 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 A L +I+ R +N L + E + + P + L + + DQ Y Sbjct: 181 ARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP-------YQSI 232 Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 L + D T GP+++DL + + S G+ ++ + +A + ++ Sbjct: 233 LEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLFKMVCALRVAQGQHLTEL 291 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRISN 369 TG I L+D+ ++ LD +R L + G+Q+F++ T+ V D L+E++K +++ Sbjct: 292 TGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSKTFHVAH 351 Query: 370 H 370 Sbjct: 352 G 352 >gi|132245|sp|P24718|RECF_ACTPL RecName: Full=DNA replication and repair protein recF gi|38953|emb|CAA45173.1| RecF [Actinobacillus pleuropneumoniae] Length = 360 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 82/370 (22%), Positives = 150/370 (40%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + Sbjct: 1 MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F AR++ + + I+ + D L+IN + +L L + Sbjct: 61 IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + +RL++ RN L + + Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L ++ R L I + Q P +++ ++ + Sbjct: 176 PWDIELAKLAEIVSQMRASYAEGLRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D T+IGP ++D + S G+ K+++ + LA Sbjct: 229 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360 + + L+D+ ++ LD KR L + + GSQ+F+T K + + E Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346 Query: 361 TAKFMRISNH 370 ++ Sbjct: 347 QDSLFQVQQG 356 >gi|289677552|ref|ZP_06498442.1| recombination protein F [Pseudomonas syringae pv. syringae FF5] Length = 367 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++IN R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRINGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|147676338|ref|YP_001210553.1| recombination protein F [Pelotomaculum thermopropionicum SI] gi|189039631|sp|A5D6E6|RECF_PELTS RecName: Full=DNA replication and repair protein recF gi|146272435|dbj|BAF58184.1| recombinational DNA repair ATPase [Pelotomaculum thermopropionicum SI] Length = 364 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 156/373 (41%), Gaps = 15/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRN+A + + G N GKTNILE+I GR FR A ++ Sbjct: 1 MLLRRLEMLNFRNFARQAVEPGLYFNVLSGRNAQGKTNILESIYLACTGRSFRTAREKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S E ++ + L + +++N V+ + Sbjct: 61 IKR-EKEFSSIRCLFETRGREVEVKVTLVP----GRKRIEVNGVL--KSGHPFGWPGVVL 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P + G ERRRFLD + P + + + R++ RN LL E + Sbjct: 114 FTPDDLVMIKGSPAERRRFLDYDLGPFHPHYAHCLDRYNRVLSQRNALLREAKEKRTTGG 173 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQS 239 + Q+ G ++ RV ++ I ++ E +I++S L + Sbjct: 174 PLEVWDEQLCRYGSRLLFLRVSLLKKFFPAIRALHRELTEGAENIEISYLSSLKIGEECG 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + E ++ +L R + +TL+GPHR DL + + + S G+Q+ +++ + Sbjct: 234 EDEIYERFSGELRLVRDEEIARMQTLVGPHRDDLHIKVDGHDARV-YCSQGQQRTIVLTL 292 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 + + TG PILLLD++ LD+++R AL + + Q F+T T + FD Sbjct: 293 KVFLIEQWRSETGEYPILLLDDVLFELDDNRREALMCRLGGL-VQTFLTCT-RVNFDIEG 350 Query: 360 ETAKFMRISNHQA 372 AK +S + Sbjct: 351 FKAKVFTVSGGEV 363 >gi|307260453|ref|ZP_07542148.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869856|gb|EFN01638.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 367 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 82/370 (22%), Positives = 151/370 (40%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN SL L VG NG GKT++LEA+ +L GR F+ + Sbjct: 8 MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAVFYLGHGRSFKSHISNRI 67 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F AR++ + + I+ + D L+IN + +L L + Sbjct: 68 IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 123 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + +RL++ RN L + + Sbjct: 124 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 182 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L ++ R AL I + Q P +++ ++ + Sbjct: 183 PWDIELAKLAEIVSQMRASYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D T+IGP ++D + S G+ K+++ + LA Sbjct: 236 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 293 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360 + + L+D+ ++ LD KR L + + GSQ+F+T K + + E Sbjct: 294 EYLVAQKERQCLFLIDDFASELDPIKRELLAYRLRESGSQVFVTAITKDQLNQMQWQESE 353 Query: 361 TAKFMRISNH 370 ++ Sbjct: 354 QDSLFQVQQG 363 >gi|111219509|ref|YP_710303.1| recombination protein F [Frankia alni ACN14a] gi|122954749|sp|Q0RUP6|RECF_FRAAA RecName: Full=DNA replication and repair protein recF gi|111147041|emb|CAJ58688.1| DNA replication and repair protein recF [Frankia alni ACN14a] Length = 378 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 161/384 (41%), Gaps = 24/384 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y SL L VG NG GKTN++EAI +++ R ++ A + Sbjct: 1 MHLTHLSLVDFRSYPSLDLTLGPGVVTLVGRNGQGKTNLIEAIGYVATLASHRVSADAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ S AR+ + A ++LE R+ R ++N + ++ L Sbjct: 61 VRQGA-SHAVVRARIVRGDRAA--LVELEIVPGRANRA-RLNRAPVPRPRDVLGLLCTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P + G RR+FLD ++ A PR + D++R+++ R+ LL G Sbjct: 117 FAPEDLALVKGDPAGRRQFLDELLVARTPRMAAVLADYDRVLKQRSTLLRTAGAARRAGG 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP------HIKLSLTG 230 D + +A G ++ AR+ ++ AL + + S+ Sbjct: 177 KGDLRTLDVWDGYLASYGAELLTARLALVEALRPGVAGAYAAVAGAQAAVGFEYRASVPQ 236 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 +E +L R + +TL+GPHR DL++ D + S G Sbjct: 237 PAPDPVRPDRERWEEAIRAELVAARPREIERGQTLVGPHRDDLLLTV-DGLPARGYASHG 295 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349 E + + + LA L+ P+LLLD++ A LD +R+ L +V Q+ +T Sbjct: 296 ESWSLALALRLASFELL-RADDREPVLLLDDVFAELDVQRRSRLAELVAPAE-QVLVTAA 353 Query: 350 TDKSVFDSLNETAKFMRISNHQAL 373 + V L T ++ + L Sbjct: 354 VEADVPAEL--TGTRYVVAAGEVL 375 >gi|325297260|ref|YP_004257177.1| DNA replication and repair protein recF [Bacteroides salanitronis DSM 18170] gi|324316813|gb|ADY34704.1| DNA replication and repair protein recF [Bacteroides salanitronis DSM 18170] Length = 372 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 79/374 (21%), Positives = 152/374 (40%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F + +G NG+GKTN+++A+ +LS + + Sbjct: 1 MWLKRISILNYKNLEQVELAFSKKLNCIIGKNGMGKTNLMDAVYYLSFCKSATNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 FF E G ++ L+ R + + N + + + + Sbjct: 61 ILH-ERDFFVIQGFYETDGGEPEEVYCGLKRRQKKQFKR---NKKEYSRLSDHIGLIPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + ++ RN LL E + Sbjct: 117 MVSPADSWLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALQQRNALLKAEIEPEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + E MA G + R + ++ + Y + ++SL A Sbjct: 177 MALWEEAMASTGKLVFQKRKDFVDEFIPVFQSYYAYISQGREQVSLMY--------ESHA 228 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L + R+ D + + G H+ DLI++ + GS G+ K L+ + LA Sbjct: 229 AHGNLLQLLKESRQRDRILGYSTKGIHKDDLIMELGGFPMKRE-GSQGQNKTYLIALKLA 287 Query: 303 HARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL-- 358 + PI+LLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRAGNRTVPIVLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDKILS 347 Query: 359 --NETAKFMRISNH 370 E + Sbjct: 348 EVGEDYNLFEVEGG 361 >gi|330952330|gb|EGH52590.1| recombination protein F [Pseudomonas syringae Cit 7] Length = 367 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 163/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + IF G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINIFYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ A+ Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSAV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|282898562|ref|ZP_06306550.1| RecF protein [Cylindrospermopsis raciborskii CS-505] gi|281196430|gb|EFA71339.1| RecF protein [Cylindrospermopsis raciborskii CS-505] Length = 369 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 162/374 (43%), Gaps = 13/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY ++ F A TI VG+N GK+N+LE++ L+ R R D Sbjct: 1 MYLQSLELRHFRNYQEQKVEFTAPKTILVGNNAQGKSNLLESVELLATLRSHRLGKDRDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ A +E + G+ D+++ L RSV IN +R + L Sbjct: 61 IQEGAE-IAQVSAILERITGVNDLTLHLRRNGRRSV---AINGEKVRRQMDFLGILNAVE 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 + G RR +LD ++ ++P + + + +++R RN L Sbjct: 117 FSSLDLELVRGSPAIRRTWLDTLLVQLEPLYAHILHQYNQVLRQRNAFLKTSQQKGIKNH 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S + +AQ+ G K+ R I L+ + + + KL + + Sbjct: 177 DSELAIWDAQLVTTGTKVMRRRNRAIQRLAPIATNWHSSISGKTEKLEINYMPNVPILID 236 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L + + ++ ++ TL+GPHR ++ + ++ + S G+Q+ +++ + Sbjct: 237 -EELPQFFLDRVQQHSPIELHRGTTLVGPHRDEIEL-IVNRTPARQYASQGQQRTLVLAL 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358 LA +LI P+LLLD++ A LD ++N L + D Q +T T FD+ Sbjct: 295 KLAELQLIEEVVNDTPLLLLDDVLAELDLSRQNQLLDAIQD-RFQTLITTTHLGAFDAQW 353 Query: 359 NETAKFMRISNHQA 372 +++ + + + Sbjct: 354 LNSSQILFVKSGTI 367 >gi|104779319|ref|YP_605817.1| recombination protein F [Pseudomonas entomophila L48] gi|122985999|sp|Q1IH46|RECF_PSEE4 RecName: Full=DNA replication and repair protein recF gi|95108306|emb|CAK13000.1| DNA replication, recombinaison and repair protein [Pseudomonas entomophila L48] Length = 367 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 157/374 (41%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L+++ RN + L + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRLSVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F +VE EG +++ + E + + ++I+ R +L + L + Sbjct: 61 IQYEQQTC-TVFGQVELAEGGTSNLGVSRERQGE---FTIRIDGQNARSAAQLAEMLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D+ Sbjct: 117 LINPDSFRLLEGAPKVRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAVSQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + E L+L+ + D+ Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --ELNEVLATSLLRDQQMGHTQAGPQRADLRLRLGANNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LDE R AL R++ ++ Q+F+T D Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDEQHRRALCRLLEELNCQVFITCVDHEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|84501258|ref|ZP_00999463.1| recombination protein F [Oceanicola batsensis HTCC2597] gi|84390549|gb|EAQ03037.1| recombination protein F [Oceanicola batsensis HTCC2597] Length = 367 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 191/368 (51%), Gaps = 11/368 (2%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 R+ + L +S FR+Y L D + G NG GKT++LEA+S SPGRG RRA+ Sbjct: 2 GRLCLTRLTLSHFRSYRHAALAPDGRPVAIHGANGAGKTSLLEAVSMFSPGRGLRRAAAE 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D+ R + + + + ++ E RSVR D L + R+ Sbjct: 62 DLIRRPEALGWKLTGVLTSLRQVHELESTAEPGAARSVRI----DGKAAAQAALGRVARV 117 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WLVPSMDR++ + RRRFLDRM + P H + +E+ MR RNRLL + D W Sbjct: 118 LWLVPSMDRLWIEGAEGRRRFLDRMTLSFLPGHAEAALAYEKAMRERNRLLKDMVRDEHW 177 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++EAQMAE G +I R ++ ++ P + LS +G+ A Sbjct: 178 YVALEAQMAEAGARITANRTRALSLIAGATAGAATAFPAPELSLS---HAEGELPDDAAA 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L L +GR+ D + RTLIGPHR DL + K I STGEQK +L+ + LA Sbjct: 235 L----RLALAEGRRRDLQAGRTLIGPHRVDLGARWAAKGIAARDASTGEQKALLISLILA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +AR ++ G PILLLDE++AHLD +R AL+ V +G+Q +MTGT +F L + A Sbjct: 291 NARALAGDFGAPPILLLDEVAAHLDAARRAALYDEVCALGAQAWMTGTGPELFADLGDRA 350 Query: 363 KFMRISNH 370 + MR++ Sbjct: 351 QVMRVTEE 358 >gi|89892749|ref|YP_516236.1| DNA replication and repair protein recF [Desulfitobacterium hafniense Y51] gi|219666074|ref|YP_002456509.1| DNA replication and repair protein RecF [Desulfitobacterium hafniense DCB-2] gi|122484263|sp|Q252K0|RECF_DESHY RecName: Full=DNA replication and repair protein recF gi|254790474|sp|B8FXW8|RECF_DESHD RecName: Full=DNA replication and repair protein recF gi|89332197|dbj|BAE81792.1| DNA replication and repair protein recF [Desulfitobacterium hafniense Y51] gi|219536334|gb|ACL18073.1| DNA replication and repair protein RecF [Desulfitobacterium hafniense DCB-2] Length = 365 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 166/372 (44%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK+L++ FRNY + F TI G+NG GKTNILE I +L G+ +R ++ Sbjct: 1 MEIKWLHLKSFRNYQDQEVDFRPGLTILQGENGQGKTNILEGIYYLLTGKSYRVHREQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F + G + ++LE+ + ++IN + R + E + + + Sbjct: 61 ARWGENEF-----HLYGDFIVQRRKLRLESHYQDKRKIIKINQIPCRKLSEYVGTINVVF 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180 P + G ERRRFLD + +H + + + ++++ +N LL +G Sbjct: 116 FSPDDLVMVKGGPAERRRFLDLHIAQHHSKHIQLLNAYNKVLQQKNALLKQGQGGSKSQI 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ +G +I R E LS E + + +L++ GK + Sbjct: 176 AQIELWNEQILRIGSEIIRNRWEFTGLLSRKGQEIYGQISSGKEELTMDYHALGK--NNL 233 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + K L + ++ + LIGPHR D++ +++ + +GS G+Q+ +++ Sbjct: 234 EEALAAFPKLLAEKMSLEMERKMVLIGPHRDDILFKLNERSARL-YGSQGQQRSIVLSTK 292 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA +I G P+LLLD++ + LD +R+ L + Q MT T Sbjct: 293 LAELEVIRQEKGDYPLLLLDDVLSELDRFRRDYLLDYTKSLQ-QTIMTMTSAETLT--QR 349 Query: 361 TAKFMRISNHQA 372 + +++ Q Sbjct: 350 ASLLLKVEKGQI 361 >gi|53729132|ref|ZP_00134098.2| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207491|ref|YP_001052716.1| recombination protein F [Actinobacillus pleuropneumoniae L20] gi|166220695|sp|A3MY75|RECF_ACTP2 RecName: Full=DNA replication and repair protein recF gi|126096283|gb|ABN73111.1| DNA replication and repair protein RecF [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 360 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 151/370 (40%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + Sbjct: 1 MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F AR++ + + I+ + D L+IN + +L L + Sbjct: 61 IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + +RL++ RN L + + Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L ++ R AL I + Q P +++ ++ + Sbjct: 176 PWDTELAKLAEIVSQMRANYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D T+IGP ++D + S G+ K+++ + LA Sbjct: 229 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCVLRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360 + + L+D+ ++ LD KR L + + GSQ+F+T K + + E Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346 Query: 361 TAKFMRISNH 370 ++ Sbjct: 347 QDSLFQVQQG 356 >gi|294138804|ref|YP_003554782.1| DNA replication and repair protein RecF [Shewanella violacea DSS12] gi|293325273|dbj|BAJ00004.1| DNA replication and repair protein RecF [Shewanella violacea DSS12] Length = 365 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 91/373 (24%), Positives = 165/373 (44%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I FRN AS +L+ + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLTRLHIETFRNIASAQLLPAEGINLIYGLNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S + FA++ + I ++ + V+ I+ I+ + L + L I Sbjct: 61 IQH-SDDKLTLFAKLNVQNKESKIGLRRFRSGETEVK---IDGDKIKRLSTLAESLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F D ++ +R+++ RN+LL S Sbjct: 117 ITPESFALLFDGPKSRRQFIDWGAFHCDKSFHSAWVNVKRILKQRNQLLKNEAG-YSQIQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ + R + +N+L+ + + E P + + ++ K Sbjct: 176 YWDTELVRYSEVVTDIRTQYVNSLNEQLKGII-GEFLPQVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L D S T GPH++DL + + A S G+ K+++ + +A Sbjct: 228 TDYAQLLETQYPRDVSSGNTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN-ETA 362 +L+ I L+D++ + LD R L + +TD G+Q+F+T + ++ DSLN + Sbjct: 287 KLLKQQIDKNSIYLVDDLPSELDAKHRQLLLQQLTDTGAQVFVTAIEPAAILDSLNTPPS 346 Query: 363 KFMRISNHQALCI 375 K + + I Sbjct: 347 KVFHVEQGRVTVI 359 >gi|292669296|ref|ZP_06602722.1| recombination protein F [Selenomonas noxia ATCC 43541] gi|292649137|gb|EFF67109.1| recombination protein F [Selenomonas noxia ATCC 43541] Length = 373 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 164/379 (43%), Gaps = 18/379 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L++ +RNY L L FD IF+G N GKTNI+EA+ + + GR R +S A++ Sbjct: 1 MQITELSLRSYRNYEDLALGFDDGAQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G A + D+ +L R R +L L + Sbjct: 61 IRMGDDG-----AHIGLRFVRHDVPRELSFTFQRGARRRIEYAGENLRQRDLVGILPMVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRR+LD + P + ++ + ++R R +L + + Sbjct: 116 FSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAVLKDIRERLAPVD 175 Query: 185 S---IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + +AQ+A I R+ + L + + VQ +L+L+ + G + Sbjct: 176 ALLPWDAQLARSAAWIVTRRIAAVADLGA-LSTRVQAVLADGEELTLSYEIAGADEDVPG 234 Query: 242 A-------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 A L+ Y + L + R D + T GPH DL++ ++ ++GS G+Q+ Sbjct: 235 AKEGMAQRLELWYNEMLIENRARDIVRAATGTGPHLDDLVLRVDGMSLR-SYGSQGQQRT 293 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + +A + T APILLLD++ + LD D+R AL + Q F+T TD + Sbjct: 294 GALALKIAELFYLREKTSEAPILLLDDVMSELDADRRRALLDFIRCERIQTFITATDAAY 353 Query: 355 FDSLNETAKFMRISNHQAL 373 F + + + Q L Sbjct: 354 FPA-ERMGTYRHVQAGQVL 371 >gi|170718431|ref|YP_001783358.1| recombination protein F [Haemophilus somnus 2336] gi|189039626|sp|B0UUM0|RECF_HAES2 RecName: Full=DNA replication and repair protein recF gi|168826560|gb|ACA31931.1| DNA replication and repair protein RecF [Haemophilus somnus 2336] Length = 358 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 79/369 (21%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I+ FRN ++ L F+ +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLIINHFRNLTAIDLEFERGFNFIIGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F +++ + + ++ + + + ++IN + + +L L + Sbjct: 61 ISYQQPHFI-LHGKIQEQQHQWSVGLQKQRQGNT---LMKINGEDAKKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR +LD +F + RL++ RN L + Sbjct: 117 ITPEGLTLLNGGPSYRRAYLDWGLFHHNASFYNAWSSLNRLLKQRNSAL-QQVCSYEKLK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L +++ R AL S I + Q P +++S++ + Sbjct: 176 IWDRELTKLAYQVSYWREAYAEALRSEIEKTCQ-LFLPELEISVSFHQGWDKNM------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D T GP ++D + S G+ K+++ + LA Sbjct: 229 -DYADLLQQNFERDRALGYTFSGPQKADFRFKANGLPVEDIL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363 + I LLD+ ++ LD+ KR L + GSQ+F+T + + E + Sbjct: 287 EHLMQQKKRHCIFLLDDFASELDQYKRTLLAERLQKNGSQVFVTAITREQLQQIQPEKHR 346 Query: 364 FMRISNHQA 372 + N + Sbjct: 347 TFYLENGRI 355 >gi|269303216|gb|ACZ33316.1| DNA replication and repair protein RecF [Chlamydophila pneumoniae LPCoLN] Length = 364 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 94/368 (25%), Positives = 157/368 (42%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L + FRN++ L + + VG N GKTN+LEA+ LS GR FR D Sbjct: 3 MKICSLKLKNFRNHSDLEISLAPKLNYIVGKNAQGKTNLLEALYVLSLGRSFRTQHLTDT 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GS FF +E + L D+ + + N + I+ + +L + I Sbjct: 63 ITFGSSHFF-----LETQFEKDHLPQALSIYTDKQGKKIFYNQLPIKTLSQLIGKVPIVL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + SG +RR FL+ ++ D + + + R ++ RN LL +S + Sbjct: 118 FSSKDRLLISGAPADRRLFLNLLLSQCDSHYTLCLSYYHRALQQRNALLKSKQ--TSTVA 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+ + G ++I R LS L E + L L D S A+ Sbjct: 176 IWDEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNNLKEQLALKFKSSLIKNSDISETAVA 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EE+ K+L D T +GPHR D ++ ++ S G++ +L + LA Sbjct: 236 EEFHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQMPVS-QFSSEGQKHSLLAILRLAEC 294 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + + +P++ LD+I A LD ++ L + +G Q +T T + L +T+ Sbjct: 295 LYLKQSHHVSPLVCLDDIHAGLDNERVGQLLDLAPTLG-QTLITSTH--MHGELPKTSLV 351 Query: 365 MRISNHQA 372 + I N Q Sbjct: 352 LSIENAQV 359 >gi|325275334|ref|ZP_08141285.1| recombination protein F [Pseudomonas sp. TJI-51] gi|324099525|gb|EGB97420.1| recombination protein F [Pseudomonas sp. TJI-51] Length = 367 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 156/374 (41%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F V+ EG +++ + E + D ++I+ R +L + L + Sbjct: 61 IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGD---FTIRIDGQNARSAAQLAELLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + E L+L+ + D+ Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELGGLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAANNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|190149272|ref|YP_001967797.1| DNA replication and repair protein RecF [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262583|ref|ZP_07544214.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226737764|sp|B3GZJ3|RECF_ACTP7 RecName: Full=DNA replication and repair protein recF gi|189914403|gb|ACE60655.1| DNA replication and repair protein RecF [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872081|gb|EFN03794.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 360 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 151/370 (40%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + Sbjct: 1 MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F AR++ + + I+ + D L+IN + +L L + Sbjct: 61 IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + +RL++ RN L + + Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L ++ R AL I + Q P +++ ++ + Sbjct: 176 PWDIELAKLAEIVSQMRASYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D T+IGP ++D + S G+ K+++ + LA Sbjct: 229 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCVLRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360 + + L+D+ ++ LD KR L + + GSQ+F+T K + + E Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346 Query: 361 TAKFMRISNH 370 ++ Sbjct: 347 QDSLFQVQQG 356 >gi|170724373|ref|YP_001758399.1| recombination protein F [Shewanella woodyi ATCC 51908] gi|226737835|sp|B1KCX5|RECF_SHEWM RecName: Full=DNA replication and repair protein recF gi|169809720|gb|ACA84304.1| DNA replication and repair protein RecF [Shewanella woodyi ATCC 51908] Length = 365 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 160/373 (42%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I FRN +S +L + G NG GKT++LEAI FL GR FR V Sbjct: 1 MSLTRLHIETFRNISSAQLHPSDGLNLIYGQNGSGKTSVLEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + FA + E + I ++ + V+ IN I+ + L + L I Sbjct: 61 IQH-QDDKLTLFANLSLGEQESKIGLRRFRSGETEVK---INGDKIKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F D + +R+++ RN+LL S Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDKSFHSAWANVKRILKQRNQLLKN-QVSYSQIQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ + + R E +++L+ + + E P +++ ++ K Sbjct: 176 FWDKELVRYSELVTLIRKEYVDSLNEQLKGII-VEFLPQVEVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ + L D + T GPH++DL + + A S G+ K+++ + +A Sbjct: 228 TDFGQLLETQYLRDVAAGNTGSGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL-NETA 362 +L+ T I L+D++ + LD R L + + D G+QIF+T D + DSL + Sbjct: 287 KLLKQQTDKNSIYLVDDLPSELDAKHRQLLLQQLMDTGAQIFVTAIDPAAIVDSLTTPPS 346 Query: 363 KFMRISNHQALCI 375 K + I Sbjct: 347 KMFHVEQGCVTVI 359 >gi|113460284|ref|YP_718343.1| recombination protein F [Haemophilus somnus 129PT] gi|123327073|sp|Q0I0Y5|RECF_HAES1 RecName: Full=DNA replication and repair protein recF gi|112822327|gb|ABI24416.1| DNA replication and repair protein RecF [Haemophilus somnus 129PT] Length = 358 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 79/369 (21%), Positives = 153/369 (41%), Gaps = 15/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I+ FRN ++ L F+ +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLIINHFRNLTAIDLEFERGFNFIIGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F +++ + + ++ + + + ++IN + + +L L + Sbjct: 61 ISYQQPHFI-LHGKIQEQQHQWSVGLQKQRQGNT---LMKINGEDAKKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR +LD +F + RL++ RN L + Sbjct: 117 ITPEGLTLLNGGPSYRRAYLDWGLFHHNASFYNAWSSLNRLLKQRNSAL-QQVCSYEKLK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L +++ R AL S I + Q P +++S++ + Sbjct: 176 IWDRELTKLAYQVSYWREAYAEALRSEIEKTCQ-LFLPELEISVSFHQGWDKNM------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D T GP ++D + S G+ K+++ + LA Sbjct: 229 -DYADLLQQNFERDRALGYTFSGPQKADFRFKANGLPVEDIL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363 + I LLD+ ++ LD+ KR L + GSQ+F+T + + E + Sbjct: 287 EHLMQQKKRHCIFLLDDFASELDQYKRTLLAERLQKNGSQVFVTAITQEQLQQIQPEKHR 346 Query: 364 FMRISNHQA 372 + N + Sbjct: 347 TFYLENGRI 355 >gi|28867246|ref|NP_789865.1| DNA replication and repair protein RecF [Pseudomonas syringae pv. tomato str. DC3000] gi|213968439|ref|ZP_03396582.1| DNA replication and repair protein RecF [Pseudomonas syringae pv. tomato T1] gi|301384273|ref|ZP_07232691.1| recombination protein F [Pseudomonas syringae pv. tomato Max13] gi|302063877|ref|ZP_07255418.1| recombination protein F [Pseudomonas syringae pv. tomato K40] gi|302131960|ref|ZP_07257950.1| recombination protein F [Pseudomonas syringae pv. tomato NCPPB 1108] gi|38258486|sp|Q88BK1|RECF_PSESM RecName: Full=DNA replication and repair protein recF gi|28850480|gb|AAO53560.1| DNA replication and repair protein RecF [Pseudomonas syringae pv. tomato str. DC3000] gi|213926727|gb|EEB60279.1| DNA replication and repair protein RecF [Pseudomonas syringae pv. tomato T1] gi|330876357|gb|EGH10506.1| recombination protein F [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964179|gb|EGH64439.1| recombination protein F [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017723|gb|EGH97779.1| recombination protein F [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 367 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 162/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCLASDEIDEFRRAYIKALKPVFEKTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLNRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ + Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTDT 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|296282365|ref|ZP_06860363.1| recombination protein F [Citromicrobium bathyomarinum JL354] Length = 361 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 127/368 (34%), Positives = 195/368 (52%), Gaps = 14/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++I +FRN+ L A+ + VG NG GKTN+LEA+S L+PGRG RRA ++ Sbjct: 1 MALDRISILDFRNHRQTALEDTARFNLLVGANGAGKTNVLEALSLLAPGRGLRRAKLPEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123 RI P F+ AR++ +G + + + R +++N + L++ L + Sbjct: 61 ARIDGPGGFTVAARLQPADGAEPVQLGTVVDAAQPNRRRVRVNGAERSALG-LSEWLSVR 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 WL P+MD +F+ + RRR+LDR+ A P H +E +R RNRLL+ + D W Sbjct: 120 WLTPAMDGLFTDSAGARRRYLDRLALATAPGHAALSNRYETALRNRNRLLSDDAPPDPQW 179 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++EAQ+AE G I R ++ L+ + E FP L++ + + Sbjct: 180 LDALEAQLAEHGAAIAANRRALVEELNREL-EAQADALFPRPLLAI--------EPTGPE 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 A L R+ + + RTLIGPHR++L V DK + A STGEQK +L+ I LA Sbjct: 231 EHTALADALRGNRRTERRAGRTLIGPHRAELAVTLADKGVPAARASTGEQKAMLIAITLA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 H L + G A +LLLDE++AHLD +R ALF + G Q++MTGT++ FD + A Sbjct: 291 HGALATR--GRAGLLLLDEVAAHLDPQRREALFARLAANGEQVWMTGTERMPFDPILPDA 348 Query: 363 KFMRISNH 370 +S Sbjct: 349 AVWDVSGG 356 >gi|66043274|ref|YP_233115.1| recombination protein F [Pseudomonas syringae pv. syringae B728a] gi|81308684|sp|Q500U5|RECF_PSEU2 RecName: Full=DNA replication and repair protein recF gi|63253981|gb|AAY35077.1| RecF protein [Pseudomonas syringae pv. syringae B728a] Length = 367 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSIHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|333025716|ref|ZP_08453780.1| putative recombination protein F [Streptomyces sp. Tu6071] gi|332745568|gb|EGJ76009.1| putative recombination protein F [Streptomyces sp. Tu6071] Length = 413 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 98/394 (24%), Positives = 157/394 (39%), Gaps = 36/394 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 27 MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 86 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F A +G ++LE R+ R +R D L +R Sbjct: 87 VRAGAERAFVRAAVTQGERSQL---VELEINPGRANRARINRSSQVRPRDVL-GIVRTVL 142 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 143 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 202 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLTGFL 232 D S + +A G ++ R ++I AL L+ E + P + L Sbjct: 203 RTLDLSTLDIWDQHLARAGAELLAQRTDLIAALQPLVDKSYEQLAPGGGPAL-LEYRPSA 261 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 G Q + L + RK + TL+GPHR ++ + S GE Sbjct: 262 PGT-AQGREEFYAQLLAALGEVRKQEIERGVTLVGPHRD-DLLLKLGDLPAKGYASHGES 319 Query: 293 KVVLVGIFLAHARLISNT-------------TGFAPILLLDEISAHLDEDKRNALFRIVT 339 + + LA L+ P+L+LD++ A LD +R+ L V Sbjct: 320 WSYALALRLASYDLLRAEPWAPQTAPGPEGQRSGEPVLILDDVFAELDARRRDRLAEHVA 379 Query: 340 DIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372 G Q+ +T ++ V L +S Sbjct: 380 -PGEQVLVTAAVEEDVPAPL--KGTRYAVSEGTV 410 >gi|330937294|gb|EGH41305.1| recombination protein F [Pseudomonas syringae pv. pisi str. 1704B] gi|330976404|gb|EGH76461.1| recombination protein F [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 367 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|307249202|ref|ZP_07531199.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858726|gb|EFM90785.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 360 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 151/370 (40%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + Sbjct: 1 MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F AR++ + + I+ + D L+IN + +L L + Sbjct: 61 IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEGGNKISDLAHLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + +RL++ RN L + + Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L ++ R AL I + Q P +++ ++ + Sbjct: 176 PWDTELAKLAEIVSQMRANYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEK-------G 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D T+IGP ++D + S G+ K+++ + LA Sbjct: 228 ADYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCVLRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360 + + L+D+ ++ LD KR L + + GSQ+F+T K + + E Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346 Query: 361 TAKFMRISNH 370 ++ Sbjct: 347 QDSLFQVQQG 356 >gi|330500917|ref|YP_004377786.1| recombination protein F [Pseudomonas mendocina NK-01] gi|328915203|gb|AEB56034.1| recombination protein F [Pseudomonas mendocina NK-01] Length = 367 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 159/372 (42%), Gaps = 17/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + ++ RN S L + I G NG GKT++LEAI L R FR V Sbjct: 1 MSLTRITVTAVRNLHSSSLQPSPRINILYGANGSGKTSVLEAIHLLGLARSFRSTRLQPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 P+ + F +V+ EG +++ I +RD + ++I+ R +L L + Sbjct: 61 IHYEQPAC-TIFGQVQLAEGGYSNLGI---SRDRQGQLQIRIDGQNARSAAQLADLLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++ R ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEHRFLGAWQRLQKALRQRNSWLRHGTLDGASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + E LSL+ + D+ Sbjct: 177 AAWDRELCGASEEIDTYRRAYIQALKPVFERTLA-ELLRLEGLSLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E ++ L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --ELSEVLATSLLRDQQLGHTQAGPQRADLRLRLAGHN-AAEILSRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L++ I L+D++ + LDE R AL R++ D+ Q+F+T D + ++ Sbjct: 288 GHLVNEAKRGQCIYLVDDLPSELDEQHRQALCRLLEDLRCQVFITCVDHELLREGWQMDT 347 Query: 361 TAKFMRISNHQA 372 + + + Sbjct: 348 PVAMFHVEHGRI 359 >gi|327404856|ref|YP_004345694.1| DNA replication and repair protein recF [Fluviicola taffensis DSM 16823] gi|327320364|gb|AEA44856.1| DNA replication and repair protein recF [Fluviicola taffensis DSM 16823] Length = 364 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 151/365 (41%), Gaps = 18/365 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRN++ F+A VG NG GKTN+L+A+ +LS R + + Sbjct: 1 MFVESLSLVNFRNHSEAEFQFEAGVNCIVGKNGSGKTNVLDAVHYLSMCRSYLNPTDKQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R FF E ++ ++ S + + N + + H + Sbjct: 61 IRFNEQ-FFVIQGCWMKDEQPFNLYCGVKAG---SKKVFKKNKKEYNRLADHIGHFPVVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P + S S RRR++D ++ D + + + +++ RN LL G+F+ Sbjct: 117 ISPYDTDLISEGSEVRRRWMDGIISQFDHEYLSDLQRYNKVLDQRNALLKLQFENGFFER 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ + G I+ RV I+A L Y + + +SL + K ++ Sbjct: 177 ESIEIWDEQLIKYGTAIHNKRVSFIDAFIPLFQHYYKWISQEQESVSLNY--ESKLSET- 233 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ + D T +G H+ D+ I GS G+QK L+ + Sbjct: 234 -----DFRTLIQQAYPKDMRVHYTSVGIHKDDITFLLEGLPIK-RFGSQGQQKSFLIALR 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSLN 359 LA + PILLLD+I LD + L +V+ Q+ +T TD+ ++ Sbjct: 288 LAQFDWLKERLNQTPILLLDDIFDKLDNLRVAQLMELVSKNTFGQVLVTDTDEIRVSAIF 347 Query: 360 ETAKF 364 ET + Sbjct: 348 ETIQV 352 >gi|303251824|ref|ZP_07337995.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249126|ref|ZP_07531133.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649254|gb|EFL79439.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854414|gb|EFM86610.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 360 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 150/370 (40%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + Sbjct: 1 MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F R++ + + I+ + D L+IN + +L L + Sbjct: 61 INYQSEDF-VLHGRIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + +RL++ RN L + + Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L ++ R AL I + Q P +++ ++ + Sbjct: 176 PWDTELAKLAEIVSQMRANYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEK-------G 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D T+IGP ++D + S G+ K+++ + LA Sbjct: 228 ADYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCVLRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360 + + L+D+ ++ LD KR L + + GSQ+F+T K + + E Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346 Query: 361 TAKFMRISNH 370 ++ Sbjct: 347 QDSLFQVQQG 356 >gi|330470836|ref|YP_004408579.1| recombination protein F [Verrucosispora maris AB-18-032] gi|328813807|gb|AEB47979.1| recombination protein F [Verrucosispora maris AB-18-032] Length = 377 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 90/382 (23%), Positives = 168/382 (43%), Gaps = 23/382 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + + + I +G NGVGKTN++EA+ +++ R A+ A + Sbjct: 1 MYVRRLELVDFRSYERVGVDLEPGPNILIGANGVGKTNLVEALGYVATLDSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ + A V ++ ++LE ++ R ++ R ++ LR+ Sbjct: 61 VRMGATAAVIRCAVVHEG---RELLVELEIVPGKANRA-RLGRSPARRARDVLGALRLVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRR+LD ++ PR+ D++R+++ RN LL Y Sbjct: 117 FAPEDLELVRGDPAERRRYLDDLLVLRQPRYAGVRADYDRVVKQRNALLRTAYLARKTGG 176 Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 D S + + +A G ++ R+E++ AL+ + + ++ Sbjct: 177 TRGGDLSTLAVWDTHLARHGAELLAGRLELVAALTPHVAKAYDAVAAGRGAAAIAYRPSV 236 Query: 235 KFDQSF---CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + + L + A L + R + TL+GPHR DL ++ + S GE Sbjct: 237 ELTEPTTDRETLAKVLAAALEEQRSAEIERGTTLVGPHRDDLTLNLGPLPAK-GYASHGE 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350 + + LA L+ N G P+L+LD++ A LD +R+ L +V SQ+ +T Sbjct: 296 SWSYALALRLAGYDLLRN-DGIEPVLVLDDVFAELDAGRRDRLADLVGGA-SQLLVTCAV 353 Query: 351 DKSVFDSLNETAKFMRISNHQA 372 V D+L +S Sbjct: 354 ADDVPDAL--RGARYEVSEGTV 373 >gi|26986757|ref|NP_742182.1| recombination protein F [Pseudomonas putida KT2440] gi|38258508|sp|Q88RW7|RECF_PSEPK RecName: Full=DNA replication and repair protein recF gi|24981348|gb|AAN65646.1|AE016191_3 DNA replication and repair protein RecF [Pseudomonas putida KT2440] Length = 367 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F V+ EG +++ + E + + ++I+ R +L + L + Sbjct: 61 IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGE---FTIRIDGQNARSAAQLAELLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + E L+L+ + D+ Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAGNNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|298490844|ref|YP_003721021.1| DNA replication and repair protein RecF ['Nostoc azollae' 0708] gi|298232762|gb|ADI63898.1| DNA replication and repair protein RecF ['Nostoc azollae' 0708] Length = 371 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 172/376 (45%), Gaps = 13/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ +FRNY ++ F A TI VG+N GK+N LEA+ L+ R R A D+ Sbjct: 1 MYLKTLHLRQFRNYQDQKIEFTAPKTILVGNNAQGKSNFLEAVELLATLRSHRLARDHDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + A +E G++D+++ L RSV IN ++R + L Sbjct: 61 IRDG-DAIAQINATLERALGISDLTLTLHRHARRSV---AINSEIVRRQMDFLGVLNAVE 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-----YFD 179 + G RR +LD ++ ++P + + + +++R RN L + Sbjct: 117 FSSLDLELVRGSPENRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAFLKKSQESGVRSQ 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S S +AQ+ G ++ I R I L+ + + + L + + ++ Sbjct: 177 ESQLSIWDAQLVTAGTRLIIRRDRAIQRLAPIAAGWHASISGSTEVLQIQYAPNVPLAKN 236 Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +++ + K+ + TL+GPHR ++ + K +GS G+Q+ +++ Sbjct: 237 HAEEVQQAFLGKIQQRTASELHRSTTLVGPHRDEVKLSINQKP-ARQYGSQGQQRTLVLA 295 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357 + LA +LI +P+LLLD++ A LD ++N L + + Q +T T FDS Sbjct: 296 LKLAELQLIEEVINESPLLLLDDVLAELDPFRQNQLLDAIQE-RFQTLITTTHLGAFDSQ 354 Query: 358 LNETAKFMRISNHQAL 373 ++++ + + + + Sbjct: 355 WLKSSQILYVRTGKII 370 >gi|313496420|gb|ADR57786.1| RecF [Pseudomonas putida BIRD-1] Length = 367 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F V+ EG +++ + E + + ++I+ R +L + L + Sbjct: 61 IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGE---FTIRIDGQNARSAAQLAELLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + E L+L+ + D+ Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAGNNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELHCQVFITCVDHELLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|170719190|ref|YP_001746878.1| recombination protein F [Pseudomonas putida W619] gi|226737821|sp|B1J3Y4|RECF_PSEPW RecName: Full=DNA replication and repair protein recF gi|169757193|gb|ACA70509.1| DNA replication and repair protein RecF [Pseudomonas putida W619] Length = 367 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 156/374 (41%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F V+ EG +++ + E D ++I+ + +L + L + Sbjct: 61 IQY-EQAACTVFGEVQLSEGGTSNLGVSRERAGD---FTIRIDGQNAKSAAQLAELLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMPAWQRLQKALRQRNSWLRHGTLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + D+ Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFEQTLS-ELVELDGLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --ELNEVLASSLLRDQQMGHTQAGPQRADLRLRLAANNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|148545262|ref|YP_001265364.1| recombination protein F [Pseudomonas putida F1] gi|166220725|sp|A5VWC0|RECF_PSEP1 RecName: Full=DNA replication and repair protein recF gi|148509320|gb|ABQ76180.1| DNA replication and repair protein RecF [Pseudomonas putida F1] Length = 367 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGSNGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F V+ EG +++ + E + + ++I+ R +L + L + Sbjct: 61 IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGE---FTIRIDGQNARSAAQLAELLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + E L+L+ + D+ Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAGNNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|307265435|ref|ZP_07546991.1| DNA replication and repair protein RecF [Thermoanaerobacter wiegelii Rt8.B1] gi|306919549|gb|EFN49767.1| DNA replication and repair protein RecF [Thermoanaerobacter wiegelii Rt8.B1] Length = 362 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRN ++ F IF G N GK+N+LE+I LS GR FR + ++ Sbjct: 1 MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G F E + + K + +++N I+ EL L Sbjct: 61 IKFGEDYFYVKAIICQENNDKKIEFGYK-----KNENKVIKVNGNKIKSTSELLGQLLTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181 P I RR++LD + ++ + ++ + +++ RN+LL + S Sbjct: 116 IFSPEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILINRNKLLKTIKEGKSRS 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+ E G KI + R + + I +++ + + ++ + K Sbjct: 176 ILEIFDDQLVEYGAKIIVVRQSYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +K+ +KL +D T +GPHR D + + + + S G+Q+ V + + L Sbjct: 236 IVKKRLKEKLLKNIDLDLKYLTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTVALCLKL 294 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 + ++ T PILLLD++ + LDE+++ + + G Q F+T T K L Sbjct: 295 SEFEILKKETSEKPILLLDDVMSELDENRKKYILERLQ--GFQTFITHTTKR---DLKGD 349 Query: 362 AKFMRISNHQAL 373 + +ISN + Sbjct: 350 C-YFKISNGVVI 360 >gi|167621944|ref|YP_001672238.1| recombination protein F [Shewanella halifaxensis HAW-EB4] gi|189039642|sp|B0TLA6|RECF_SHEHH RecName: Full=DNA replication and repair protein recF gi|167351966|gb|ABZ74579.1| DNA replication and repair protein RecF [Shewanella halifaxensis HAW-EB4] Length = 365 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 158/373 (42%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I FRN + +L + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLTRLHIETFRNISLAQLDPGDGLNLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + FA + E + I ++ + V+ IN I+ + L + L I Sbjct: 61 IQHN-DDKLTLFANLSVCEQESKIGLRRFRNGETEVK---INGDNIKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F D + R+++ RN+LL S Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDKSFHLAWANVRRILKQRNQLLKN-QVSYSQIQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ ++ R + +++L+ + + E P +++ ++ K Sbjct: 176 YWDKELVRYSEQVTEIRKQYVDSLNEQLKGII-GEFLPLVEVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ + L D + T GPH++DL + + A S G+ K+++ + +A Sbjct: 228 TDFGQLLETQYLRDVAAGNTGSGPHKADLRLRVGVLPVQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362 +L+ T I L+D++ + LD R L + + D G+Q+F+T + + DSL + Sbjct: 287 KLLKQQTDKNSIYLVDDLPSELDAQHRKLLLQQLMDTGAQVFVTAIEPAAIVDSLATPPS 346 Query: 363 KFMRISNHQALCI 375 K + I Sbjct: 347 KMFHVEQGCVTVI 359 >gi|322513483|ref|ZP_08066593.1| recombination protein F [Actinobacillus ureae ATCC 25976] gi|322120702|gb|EFX92586.1| recombination protein F [Actinobacillus ureae ATCC 25976] Length = 360 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 150/370 (40%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN S+ L VG NG GKT++LEAI +L GR F+ + Sbjct: 1 MPLSRLIINNFRNLQSIDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F R++ + + I+ + D L+IN + +L L + Sbjct: 61 IHYQAEDF-VLHGRIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + +RL++ RN L + Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSYWANLKRLLKQRNAALHQ-VRSYVELK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L ++ R AL I + Q P +++ ++ + Sbjct: 176 PWDIELVKLAETVSQMRASYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWE-------QG 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D + T+IGP ++D + S G+ K+++ + LA Sbjct: 228 ADYAEILAQGFERDKATGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360 + + L+D+ ++ LD KR L + + GSQ+F+T K + + E Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346 Query: 361 TAKFMRISNH 370 + +I Sbjct: 347 QDRLFQIQQG 356 >gi|189423085|ref|YP_001950262.1| recombination protein F [Geobacter lovleyi SZ] gi|226737802|sp|B3E8N9|RECF_GEOLS RecName: Full=DNA replication and repair protein recF gi|189419344|gb|ACD93742.1| DNA replication and repair protein RecF [Geobacter lovleyi SZ] Length = 368 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 91/368 (24%), Positives = 159/368 (43%), Gaps = 10/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + ++RN + T+ G NG GKTN LE++ L R FR A D+ Sbjct: 1 MFLKQVWLEQYRNIQKACIQPARHLTVLYGRNGQGKTNFLESLYLLGNARPFRAAKVPDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GS S A V G+ A + + + S R + I+D + +L+ L + Sbjct: 61 ISHGSRS-----AAVRGLVLAAGVESTIVLHVENSTRRVTIDDKAVHRAADLHGKLAVVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + RRR+LDR ++A D + R+++ RN LL + Sbjct: 116 FSPDDTAMVKLGPETRRRYLDRSLYASDAAFLSDYHTYYRILKQRNALLKTNQ--QAGLD 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 Q+A G+++ R + L+ L+ + Q+ K+S+ D Sbjct: 174 LWTEQLATAGIRLMQHRQHYTSRLNQLLQQKYQQIAGEQEKVSVVYQPDVICTAEENGT- 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + + D + T GPHR DL+ D+ + + GS G+Q+ ++ + +A Sbjct: 233 ELLLNVFRNQHEQDLRYKSTGRGPHRDDLLFSIGDRPLK-SFGSQGQQRSFVLALKMAEL 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363 + T G P+LLLD+I++ LD ++ L V Q+ +T TD + F L + +K Sbjct: 292 DHLQETFGEMPLLLLDDIASELDRERMTNLLSYVRQREVQVLITTTDVTPFLPVLQQDSK 351 Query: 364 FMRISNHQ 371 R+ + Sbjct: 352 LFRVEEGR 359 >gi|192361120|ref|YP_001980527.1| recombination protein F [Cellvibrio japonicus Ueda107] gi|226737773|sp|B3PEM4|RECF_CELJU RecName: Full=DNA replication and repair protein recF gi|190687285|gb|ACE84963.1| RecF protein [Cellvibrio japonicus Ueda107] Length = 365 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 164/375 (43%), Gaps = 17/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + RN S+ + ++ + G NG GKT++LEAI+ L+ GR FR + + Sbjct: 1 MSLARLRVHHLRNLESVDIEPSSRVNLIYGLNGSGKTSLLEAINVLALGRSFRSHKHKPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +F + F RV + A+I I ++ V L+ N + + +L L + Sbjct: 61 ISHQQLAF-TIFGRV-LADDAAEIPIGIQRNQQGEV-MLKANGANVGSIADLAIFLPVQV 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + G RR+F+D +VF ++ + + +R ++ RN LL D S Sbjct: 118 INSDTFLLLEGSPKVRRQFMDWLVFHVEHQFYPQWKSLQRCLKHRNSLLRRDRIDPFELS 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ +L +I+ R + + + + +Q E L L + Sbjct: 178 TWDQELVQLTEQIHCFREQCMALFVPVFEQLLQ-EFVVLEGLELHYQRGWDKHK------ 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L D + D T G HR++L + + S G+QK+++ + +A Sbjct: 231 -DYAQVLQDSFERDKRLGVTHAGSHRAELRITLNGQD-AAEILSRGQQKLLVCALKIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-----FDSLN 359 + S TG I L+D++ A LDE R L + + +Q+F+TG ++ D Sbjct: 289 LVFSQVTGRKCIYLVDDLPAELDEQHRQRLVDWLYRMDTQVFITGVERQALLAGWLDKPE 348 Query: 360 ETAKFMRISNHQALC 374 T K + + + C Sbjct: 349 ITPKMFHVEHGRVSC 363 >gi|119947310|ref|YP_944990.1| DNA replication and repair protein RecF [Psychromonas ingrahamii 37] gi|166220727|sp|A1T0X6|RECF_PSYIN RecName: Full=DNA replication and repair protein recF gi|119865914|gb|ABM05391.1| DNA replication and repair protein RecF [Psychromonas ingrahamii 37] Length = 359 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L F+ + + VG NG GKT +LEAI FL GR FR + V Sbjct: 1 MSLSRLIIHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S SF + F+ ++ G I ++ + L+IN + + L ++L + Sbjct: 61 VEHESKSF-TLFSEIQNNNGSIPIGLQKSKSGET---LLKINGSYCKKLANLTQYLPLQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + SG RR FLD VF DP +RL++ RN L + + Sbjct: 117 ITPEGYTLLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQRNAALKQCKTYNE-LQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R L L+ + + + P ++ F + Sbjct: 176 IWDNELCILSEEISQQREAYFELLMPLVKQTLA-DFLPDFSITSQFFCGWDKNN------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + LFD D T GP ++DL ++ S G+ K+ + + LA Sbjct: 229 KSLQDYLFDNFYRDKQIGYTSAGPQKADLRFKINGIPVSDVL-SRGQLKLFVYALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363 +++ + L+D+ S+ LD++K+ L + + + +QIF++ D L + Sbjct: 288 LFLNSFDNKQCVFLIDDFSSELDQNKQQILAKHIINSNAQIFISVIAAENIDRLFGQEQT 347 Query: 364 FMRISNHQA 372 + + + Sbjct: 348 VFHVEHGKI 356 >gi|289628212|ref|ZP_06461166.1| recombination protein F [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330870077|gb|EGH04786.1| recombination protein F [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987021|gb|EGH85124.1| recombination protein F [Pseudomonas syringae pv. lachrymans str. M301315] Length = 367 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|284047391|ref|YP_003397730.1| DNA replication and repair protein RecF [Acidaminococcus fermentans DSM 20731] gi|283951612|gb|ADB46415.1| DNA replication and repair protein RecF [Acidaminococcus fermentans DSM 20731] Length = 378 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 75/378 (19%), Positives = 157/378 (41%), Gaps = 16/378 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + FRNY + + TIF GDN GKTN+LE I + G FR ++ Sbjct: 1 MRLENLRLLHFRNYEQVSIPLGHNITIFYGDNAQGKTNLLEGIHTAARGFSFRTRHEEEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ + + + G + + +K R + +N + ++ + + Sbjct: 61 PSFGAEEWAAEL-QYRDRYGSSRLLVKRYPVRGRMKKENLLNGNPVTPREQY-GLVNLVL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P ++ G RR+FLD + + P + + + R+++ RNR L + Sbjct: 119 FTPDDLQLVKGDPALRRKFLDMEIAQVSPVYYDLLAQYNRVLQQRNRFLKQCRDREKLEE 178 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-------FLD 233 + + +A+L I R++ ++ + + L+L+ Sbjct: 179 AQLLVWDGALAQLAAGILDHRLQALSGILQAARQVYDGITGTQEALTLSYVQKRGDGEET 238 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + + A + Y ++L ++D + T +GPHR DL + + + + +GS G+Q+ Sbjct: 239 VRENPGPGAWEGFYREQLRLRHRLDYLRGYTSLGPHRDDLEIFHEGRPLRA-YGSQGQQR 297 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + L+ I + P+LLLD++ + LD+ +R L + Q F+T + Sbjct: 298 TAALALKLSELEFIRSVREEYPVLLLDDVLSELDQHRREKLLGFINGT-VQTFLT-VNDR 355 Query: 354 VFDSLNETAKFMRISNHQ 371 ++ R+ + Sbjct: 356 HLAPVDGDVAAYRVREGR 373 >gi|303250482|ref|ZP_07336679.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251524|ref|ZP_07533431.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256024|ref|ZP_07537812.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302650470|gb|EFL80629.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860988|gb|EFM92994.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865446|gb|EFM97341.1| DNA replication and repair protein recF [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 360 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 150/370 (40%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN SL L VG NG GKT++LEAI +L GR F+ + Sbjct: 1 MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F R++ + + I+ + D L+IN + +L L + Sbjct: 61 INYQSEDF-VLHGRIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + +RL++ RN L + + Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSYWANLKRLLKQRNAALHQ-VRSYAELK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L ++ R AL I + Q P +++ ++ + Sbjct: 176 PWDTELAKLAEIVSQMRANYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEK-------G 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D T+IGP ++D + S G+ K+++ + LA Sbjct: 228 ADYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCVLRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360 + + L+D+ ++ LD KR L + + GSQ+F+T K + + E Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346 Query: 361 TAKFMRISNH 370 ++ Sbjct: 347 QDSLFQVQQG 356 >gi|312142412|ref|YP_003993858.1| DNA replication and repair protein RecF [Halanaerobium sp. 'sapolanicus'] gi|311903063|gb|ADQ13504.1| DNA replication and repair protein RecF [Halanaerobium sp. 'sapolanicus'] Length = 373 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 173/376 (46%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + FRN+ + L ++ IF+GDNG GKTN+LEAI ++ R + +++ Sbjct: 1 MHLKRVLCRNFRNFDEIILDLNSNLNIFLGDNGQGKTNLLEAIYIMATTNSHRSSVCSEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A ++ + + +IKL R D+ R +++ND + V E+ +L Sbjct: 61 INWKKEE-----ALIQLLLERREGNIKLAMRLDKGGRRVELNDNPLDKVKEMVGYLNAVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180 P ++ RR F++ + + + + ++ +++ RN LL Sbjct: 116 FSPEDLKLVKEGPSHRREFINLEISQVSRYYNHLLSKYDHILKQRNNLLKSIRDGKKSSE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLSLTGFLDG-KFD 237 + S + Q++ +G KI + R+E+++ L + + + E +++ LDG Sbjct: 176 NMLSIWDEQLSTIGAKIILKRIEVVDKLKILARLSQRQITEGKEELEIEYDISLDGFSEK 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L+ + K L + R+ + T+IGPHR DLI+ + + +GS G+Q+ + Sbjct: 236 MGEAELRGLFNKNLKEKREQEINRGYTVIGPHRDDLILKINEMDLR-KYGSQGQQRTAAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA + + TG P+LLLD++ + LD +R AL I+ + Q +T TD Sbjct: 295 ALKLAELEFMKSETGEYPVLLLDDVFSELDSLRRKALINIIANK-IQTIITATDGENLSG 353 Query: 358 LNETA-KFMRISNHQA 372 L + R+ + Sbjct: 354 LKNNSYHVYRVKEGKI 369 >gi|296137755|ref|YP_003644998.1| DNA replication and repair protein RecF [Tsukamurella paurometabola DSM 20162] gi|296025889|gb|ADG76659.1| DNA replication and repair protein RecF [Tsukamurella paurometabola DSM 20162] Length = 401 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 90/384 (23%), Positives = 164/384 (42%), Gaps = 29/384 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++ + + T+FVG NG GKTN++EA+++L+ R ++ + Sbjct: 1 MYVRRLRLHDFRSWDDVDIELGPGVTVFVGRNGFGKTNLIEALNYLATLGSHRVSTDQPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ S + A V +++ +++ R+ + +IN R +L L+ Sbjct: 61 IRVGTESA-TVLATVHNAG--RELTAEVDIVAGRANKA-RINTAPSRRPRDLLGILQSVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G RRRFLD + PR D++R+++ R LL Y + Sbjct: 117 FAPEDLSLVRGDPGGRRRFLDELAILRTPRIAAEKADYDRVLKQRTALLKTAYAAARRGG 176 Query: 181 -------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + + Q+A G ++ AR+E++ AL + PH + + + Sbjct: 177 PDAESMLATLDVWDVQLARFGAEMLAARLEVVAALQPHLTVAYGAL-APHSRAATMEYTS 235 Query: 234 GKFDQSF---------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 G FD F L+E L R + L+GPHR DL + ++ Sbjct: 236 GLFDDEFGGDPATATVAELEEAMLAGLQRARSREIDRGVCLVGPHRDDLDLRLGNEPAK- 294 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 S GE + + LA L+ G P+LLLD++ A LD +R AL + + Sbjct: 295 GFASHGESWSYALALRLASLELL-RAGGSDPVLLLDDVFAELDTKRRTALADVAAETEQV 353 Query: 345 IFMTGTDKSVFDSLNETAKFMRIS 368 I + + +L A+ ++ Sbjct: 354 IVTAAVPEDLPPTL--RARTFEVT 375 >gi|257485597|ref|ZP_05639638.1| recombination protein F [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011885|gb|EGH91941.1| recombination protein F [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 367 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + P+ + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPAC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|323342251|ref|ZP_08082483.1| recombination protein F [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463363|gb|EFY08557.1| recombination protein F [Erysipelothrix rhusiopathiae ATCC 19414] Length = 361 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 172/366 (46%), Gaps = 10/366 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + +FRN ++L L F+ +FVGDNG GKTNI+E++ +LS GR FR +S + Sbjct: 1 MKVKNLELKQFRNISNLNLSFNKNINVFVGDNGQGKTNIIESLVYLSSGRSFRVSSDEYL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ F S A +E ++ + L + + + LQ+N ++ + E + Sbjct: 61 IQYGNE-FLSVIADIEDQNNTQNLKVVLSS----AGKYLQVNQQPLKKMTEFIGRCNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P +S +RRR +D + + R+ ++ +L+ RN L D + Sbjct: 116 FNPEDINFYSNSPRKRRREIDFELGKMSKRYLNQLSLSNKLLSERNAYLKNKNVDQDYLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ + + I R + ++AL+ +I Y + + L + LK Sbjct: 176 ILTEKLVDASILIIEMRAKFVHALNPIINHYYHLLSDSKDHIVLHYKAPISLE---GDLK 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ K+ D + D + T G HR D I D + + S G+++++++ LA Sbjct: 233 EQLLSKMQDSFQRDCDFKVTQNGIHRDDFIFMINDIPV-VNVSSQGQKRMLIIAFKLAIV 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 LI + PIL LD++ + LD +R + ++ + Q+F+T TD S + + F Sbjct: 292 ELIFQSRKTYPILCLDDLFSELDNVRRERVLNVLHE-EMQVFITTTDLDYVKSKRDKSVF 350 Query: 365 MRISNH 370 +S + Sbjct: 351 KVVSGN 356 >gi|330881906|gb|EGH16055.1| recombination protein F [Pseudomonas syringae pv. glycinea str. race 4] Length = 367 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPPPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCYASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|302185842|ref|ZP_07262515.1| recombination protein F [Pseudomonas syringae pv. syringae 642] Length = 367 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCLASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|297158794|gb|ADI08506.1| recombination protein F [Streptomyces bingchenggensis BCW-1] Length = 407 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 97/414 (23%), Positives = 165/414 (39%), Gaps = 50/414 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + T FVG NG GKTN++EA+ +++ R ++ A + Sbjct: 1 MHVTHLSLADFRSYARAEVALGPGVTAFVGPNGQGKTNLVEAVGYVATLGSHRVSADAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A VEG ++LE ++ R +R D L LR Sbjct: 61 VRMGADRAVVRAAIVEGDRQQL---VELELNPGKANRARINRSSQVRPRDVL-GILRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRADYERVLKQRNTLLKTAALARRHGG 176 Query: 181 ----------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSL 228 S + +A G ++ R+++I AL L + ++ I Sbjct: 177 GRGSGGDGALSTLDVWDQHLARAGAELLAQRLDLIAALQPLTDKAYEQLAPGGGPIGFDY 236 Query: 229 TGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 + + L E+ + L RK + TL+GPHR DLI+ + + Sbjct: 237 RSSVGDGLAAAGTREELYEQLSAALTAARKQEIERGVTLVGPHRDDLILRLGELPAK-GY 295 Query: 287 GSTGEQKVVLVGIFLAHARLISN-------------------------TTGFAPILLLDE 321 S GE + + LA L+ P+L+LD+ Sbjct: 296 ASHGESWSYALALRLASYDLLRADISWAPGGLSAEAAEAAGGGEAGAVRRAGEPVLVLDD 355 Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 + A LDE +R L +V G Q+ +T + + A++ +S + + Sbjct: 356 VFAELDERRRERLAELVA-PGEQVLVTAAVEDDVPGVLAGARY-AVSEGEVRPL 407 >gi|320321690|gb|EFW77789.1| recombination protein F [Pseudomonas syringae pv. glycinea str. B076] gi|320331108|gb|EFW87079.1| recombination protein F [Pseudomonas syringae pv. glycinea str. race 4] Length = 367 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCYASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|224538410|ref|ZP_03678949.1| hypothetical protein BACCELL_03304 [Bacteroides cellulosilyticus DSM 14838] gi|224519969|gb|EEF89074.1| hypothetical protein BACCELL_03304 [Bacteroides cellulosilyticus DSM 14838] Length = 370 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 150/373 (40%), Gaps = 20/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F + F G NG+GKTN+L+AI FLS + + Sbjct: 1 MILKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAIYFLSFCKSSGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G +I ++ R + + N + + L + Sbjct: 61 IRHDQE-FFVIQGFYEAPDGTLEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEVPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I+ + + + ++ LT + Sbjct: 177 FLIWEEMMAQAGEIVFRKREAFISEFIPIFQSFYSFISQDKEQVGLTYDSHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 231 --ASLLDVIKASRVRDQIMGYSLHGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRILHK 347 Query: 359 -NETAKFMRISNH 370 K ++ Sbjct: 348 VGSDYKMFQVDQG 360 >gi|189467918|ref|ZP_03016703.1| hypothetical protein BACINT_04310 [Bacteroides intestinalis DSM 17393] gi|189436182|gb|EDV05167.1| hypothetical protein BACINT_04310 [Bacteroides intestinalis DSM 17393] Length = 370 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 151/373 (40%), Gaps = 20/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F + F G NG+GKTN+L+AI FLS + + Sbjct: 1 MILKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAIYFLSFCKSSGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E ++G +I ++ R + + N + + L + Sbjct: 61 IRHDQE-FFVIQGFYEALDGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEVPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I+ + + + ++ LT + Sbjct: 177 FLIWEEMMAQAGEIVFRKREAFISEFIPIFQSFYSFISQDKEQVGLTYDSHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 231 --ASLLDVIKASRVRDQIMGYSLHGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGTAVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRILHK 347 Query: 359 -NETAKFMRISNH 370 K ++ Sbjct: 348 VGSDYKMFQVDQG 360 >gi|146305045|ref|YP_001185510.1| recombination protein F [Pseudomonas mendocina ymp] gi|166220724|sp|A4XN62|RECF_PSEMY RecName: Full=DNA replication and repair protein recF gi|145573246|gb|ABP82778.1| DNA replication and repair protein RecF [Pseudomonas mendocina ymp] Length = 367 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 158/374 (42%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + ++ RN + L + I G NG GKT++LEAI L R FR V Sbjct: 1 MSLSRIMVTAVRNLHPVTLSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSTRLQPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 P+ + F +V+ EG +++ I +RD + ++I+ R +L L + Sbjct: 61 IHYEQPAC-TVFGQVQLAEGGSSNLGI---SRDRQGELQIRIDGQNARSAAQLADLLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++ R ++ +R RN L G D + Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEHRFLGAWQRLQKALRQRNSWLRHGTLDGASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + E L+L+ + D+ Sbjct: 177 AAWDRELCSASQEIDTYRRAYIQALKPVFERTLA-ELLQLEGLTLSYYRGWDKDR----- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E ++ L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 --ELSEVLASSLLRDQQLGHTQAGPQRADLRLRLAGHN-AAEILSRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L++ I L+D++ + LDE R AL R++ D+ Q+F+T D + + Sbjct: 288 GHLVNEAKRGQCIYLVDDLPSELDEQHRQALCRLLEDLHCQVFITCVDHELLREGWHTDT 347 Query: 361 TAKFMRISNHQALC 374 + + + Sbjct: 348 PVAMFHVEHGRITQ 361 >gi|319901304|ref|YP_004161032.1| DNA replication and repair protein RecF [Bacteroides helcogenes P 36-108] gi|319416335|gb|ADV43446.1| DNA replication and repair protein RecF [Bacteroides helcogenes P 36-108] Length = 369 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 20/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+AI FLS + + Sbjct: 1 MILKRISILNYKNLEQVELSFSAKLNCFFGQNGMGKTNLLDAIYFLSFCKSAGNPVDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + FF E +G +I ++ R + + N + + L + Sbjct: 61 ICHDAD-FFVIQGGYESTDGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQLVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + + ++ LT + Sbjct: 177 FLIWEEMMAQAGEVVFRKREAFIQEFIPIFQSFYSFISQDKERVGLTYDSHAR------- 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++ L + R D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 230 -NASLSEVLKESRMRDQIMGYSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDCILHK 347 Query: 359 -NETAKFMRISNH 370 K R+ Sbjct: 348 VGSDYKMFRVDQG 360 >gi|29349663|ref|NP_813166.1| DNA repair protein RecF [Bacteroides thetaiotaomicron VPI-5482] gi|253569966|ref|ZP_04847375.1| DNA replication and repair protein recF [Bacteroides sp. 1_1_6] gi|298383927|ref|ZP_06993488.1| RecF protein [Bacteroides sp. 1_1_14] gi|51316448|sp|Q89ZW6|RECF_BACTN RecName: Full=DNA replication and repair protein recF gi|29341573|gb|AAO79360.1| DNA replication and repair protein RecF, ABC family ATPase [Bacteroides thetaiotaomicron VPI-5482] gi|251840347|gb|EES68429.1| DNA replication and repair protein recF [Bacteroides sp. 1_1_6] gi|298263531|gb|EFI06394.1| RecF protein [Bacteroides sp. 1_1_14] Length = 369 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 152/373 (40%), Gaps = 20/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + + F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEQVEIGFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G +I ++ R + + N + L + Sbjct: 61 IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + + ++ L+ + Sbjct: 177 FLVWEEMMAQAGEIVFRKREAFIEEFIPIFQSFYSFISQDKEQVGLSYDSHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L R+ D + +L G H+ +L + D I GS G+ K LV + LA Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGDFPIK-KEGSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + T P+LLLD+I LD + + ++V D QIF+T T++ D + + Sbjct: 288 QFDFLKRTGQTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILQK 347 Query: 362 ----AKFMRISNH 370 K R+ Sbjct: 348 VGSDYKVFRVDQG 360 >gi|330970327|gb|EGH70393.1| recombination protein F [Pseudomonas syringae pv. aceris str. M302273PT] Length = 367 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMITWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSIHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|293400052|ref|ZP_06644198.1| DNA replication and repair protein RecF [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306452|gb|EFE47695.1| DNA replication and repair protein RecF [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 366 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 165/368 (44%), Gaps = 9/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + + +FRNY L+ VF + G N GKTN+LEA+ +LS R R + D+ Sbjct: 1 MRVSEIRLHDFRNYEDLQAVFSDGIHVLAGKNAQGKTNLLEALLYLSTTRSHRTNTDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S +FF A++E DI I + + + L I + V + Sbjct: 61 IREKSEAFF-IRAKIEKEHKKEDIQITV----NEKGKNLFIYQNPVNRVSDFIGEFNAVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P +F+ RRRF+D + I ++ + +L++ RN L + + D ++ Sbjct: 116 FCPDDMSLFNASPRVRRRFVDMELSKISKKYVSTLYVALKLLKERNAYLKQEHVDKAYLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +Q+ E V I R + L ++ ++ + L+++ FD+ +K Sbjct: 176 VLTSQLIEEEVVIIRQRHYFLKELLEKCQKFYKELSQDDTLLNISYDSCIPFDEDKNVMK 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E KK D ++T+IG H+ D DK + + S G+++ VL+ + + Sbjct: 236 EALKKKYAKHLARDIYLKQTIIGIHKEDFTFMINDKDL-ATYASQGQKRSVLLALKIGMV 294 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--TA 362 +I + P+LLLD++ + LD +R L + QIF++ TD + + + + Sbjct: 295 YMIRDIIQEFPVLLLDDVFSELDVYRREKLLTSLPA-EVQIFISTTDTTEAEKIRKLRKV 353 Query: 363 KFMRISNH 370 +++N Sbjct: 354 TLWKVANG 361 >gi|255324006|ref|ZP_05365131.1| DNA replication and repair protein RecF [Corynebacterium tuberculostearicum SK141] gi|255298863|gb|EET78155.1| DNA replication and repair protein RecF [Corynebacterium tuberculostearicum SK141] Length = 403 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 92/380 (24%), Positives = 162/380 (42%), Gaps = 26/380 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FR++ L + T+FVG NG GKTNI+EAI + + R + A + Sbjct: 1 MYVRDLDVRDFRSWPELNVQLGPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVSYDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ S S A +G E + IK + QIN +R EL ++ Sbjct: 61 VRQGADSARVSITAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174 P + G RR +LD ++ + PR D++++++ RN LL Sbjct: 116 LFSPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRG 175 Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228 +G + + +AQ+A LG ++ AR+ +++AL I + Sbjct: 176 YSNSDGAAALATLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYSGLAPESRPAHVEY 235 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 +D + A+ +L R+ + +L+GPHR DL+++ D+ S Sbjct: 236 KSTIDTSDREVLEAV---LLTELAAARQREIERGISLVGPHRDDLVLNLGDQPAK-GFAS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G P+L+LD++ A LD +R L + + Q+ +T Sbjct: 292 HGETWSYAIALRLAEFNLLRQEGGSDPVLILDDVFAELDAKRRKQLVHLAAEAE-QVLIT 350 Query: 349 GTDKSVFDSLNETAKFMRIS 368 E R+S Sbjct: 351 AAVDEDLPGNLEPIVRYRVS 370 >gi|302520519|ref|ZP_07272861.1| recombination protein F [Streptomyces sp. SPB78] gi|318058968|ref|ZP_07977691.1| recombination protein F [Streptomyces sp. SA3_actG] gi|302429414|gb|EFL01230.1| recombination protein F [Streptomyces sp. SPB78] Length = 387 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 156/393 (39%), Gaps = 34/393 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F A +G ++LE R+ R +R D L +R Sbjct: 61 VRAGAERAFVRAAVTQGERSQL---VELEINPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233 D S + +A G ++ R ++I AL L+ + ++ L Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLARRTDLIAALQPLVDKTYEQLAPGGGPALLEYRPSAP 236 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G Q + L + RK + TL+GPHR ++ + S GE Sbjct: 237 GT-AQGREEFYAQLLAALGEVRKQEIERGVTLVGPHRD-DLLLKLGDLPAKGYASHGESW 294 Query: 294 VVLVGIFLAHARLISNT-------------TGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + + LA L+ P+L+LD++ A LD +R+ L V Sbjct: 295 SYALALRLASYDLLRAEPWAPQTAPGPEGQRSGEPVLILDDVFAELDARRRDRLAEHVAS 354 Query: 341 IGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372 G Q+ +T ++ V L +S Sbjct: 355 -GEQVLVTAAVEEDVPAPL--KGTRYAVSEGTV 384 >gi|298484611|ref|ZP_07002716.1| DNA recombination and repair protein RecF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160868|gb|EFI01884.1| DNA recombination and repair protein RecF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 367 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 162/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHN-AVDILSRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|77456231|ref|YP_345736.1| recombination protein F [Pseudomonas fluorescens Pf0-1] gi|97180883|sp|Q3KKF9|RECF_PSEPF RecName: Full=DNA replication and repair protein recF gi|77380234|gb|ABA71747.1| DNA replication and repair protein RecF [Pseudomonas fluorescens Pf0-1] Length = 367 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 157/374 (41%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + + I G NG GKT++LEAI L R FR V Sbjct: 1 MSLSRVSVTAVRNLHPVTFSPSPRINILYGANGSGKTSVLEAIHLLGLARSFRSTRLLPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F +VE EG + I +RD + ++I+ R +L + L + Sbjct: 61 IQYEQLAC-TVFGQVELAEGGHSALGI---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D+ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAVSQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + ++ + +I+ R I AL + + + E L+L+ + D+ A+ Sbjct: 177 AVWDRELCQASAEIDEYRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKDRELSAV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L + D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LAGSVQRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LDE R AL R++ D+ Q+F+T D + Sbjct: 288 GHLVSQARRGQCIYLVDDLPSELDESHRRALCRLLEDLRCQVFITCVDHELLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|317123181|ref|YP_004097293.1| DNA replication and repair protein RecF [Intrasporangium calvum DSM 43043] gi|315587269|gb|ADU46566.1| DNA replication and repair protein RecF [Intrasporangium calvum DSM 43043] Length = 424 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 85/410 (20%), Positives = 150/410 (36%), Gaps = 47/410 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + F T +G NG GKTN++EAI +L+ R A+ + Sbjct: 1 MHVRHLTLKDFRSYPGAEIAFSPGVTTLIGLNGQGKTNLVEAIGYLATLGSHRVAADQPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A + G + I+LE R+ R ++ + ++ LR Sbjct: 61 VRFGASQAIVRGAVMSGG---HETMIELEITPGRANRA-RLGRAPVSRPRDVLGTLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ PR D++++++ RN LL Sbjct: 117 FAPEDLALVKGDPSERRRFLDDLLVQRQPRWAGVRADYDKIVKQRNALLKSAAPVLRPGR 176 Query: 179 ----------------DS----------SWCSSIEAQMAELGVKINIARVEMINALSSLI 212 D +A +G ++ AR+ ++ L + Sbjct: 177 RGSGGGGRAAARSRPGDPPVDEARESALHTLDVWNEHLATVGSQLLYARLRLLRDLRPDL 236 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFD----------QSFCALKEEYAKKLFDGRKMDSMSR 262 + + + L++ L R + Sbjct: 237 SASYDAVSASEAGATAQYKSSLHEEAAARLAAGEVPEIPELRQSLLDSLAAVRGAEIERG 296 Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322 L+GPHR D+++ + + S GE +G+ LA RL++ G P+L+LD++ Sbjct: 297 VGLVGPHRDDVVLTLGNLPAK-GYASHGESWSFALGLKLAAYRLLARDLGDDPVLVLDDV 355 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 A LD +R L ++ D I V L E + Q Sbjct: 356 FAELDSGRRERLAELIGDCEQVIITAAVGADVPVQLRERGHTYEVELGQI 405 >gi|24371610|ref|NP_715652.1| DNA replication and repair protein RecF [Shewanella oneidensis MR-1] gi|51316466|sp|Q8EKT0|RECF_SHEON RecName: Full=DNA replication and repair protein recF gi|24345360|gb|AAN53097.1|AE015452_10 DNA replication and repair protein RecF [Shewanella oneidensis MR-1] Length = 360 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 160/373 (42%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI FRN +L + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLIRLNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FA + G + I ++ + V+ I+ ++ + L + L I Sbjct: 61 INNDQDK-LTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DP+ ++ R+++ RN++L G Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGSP-YDQIQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ R +++L+ L+ + E P + + ++ K Sbjct: 176 YWDREFIRYTEQVTEIRNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++A+ L D + T+ GPH++DL + A S G+ K+++ + +A Sbjct: 228 TDFAQLLESQYPRDLATGHTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362 +L+ I L+D++ + LD R L + + D G+Q+F+T + + DSL+ + Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHTPPS 346 Query: 363 KFMRISNHQALCI 375 + + + + I Sbjct: 347 RMFHVEHGRVTVI 359 >gi|312892157|ref|ZP_07751654.1| DNA replication and repair protein RecF [Mucilaginibacter paludis DSM 18603] gi|311295287|gb|EFQ72459.1| DNA replication and repair protein RecF [Mucilaginibacter paludis DSM 18603] Length = 366 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 81/375 (21%), Positives = 158/375 (42%), Gaps = 22/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ F+NY ++ + F G+NG GKTN+L+A+ +LS + + + Sbjct: 1 MYLKQLSLLNFKNYTQAEIILEPGVNAFAGNNGAGKTNLLDAVHYLSLCKSYFNPIDSQQ 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ FF + I+ L+ + + N + + + + Sbjct: 61 IKQGAD-FFMVNGVFSKDDKAEVIACGLKRNQKKQFKR---NKKEYQRLADHIGLFPLVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P I S ERR+F+D ++ D + +I + +++ RN LL G +D Sbjct: 117 ISPYDISIIIEGSEERRKFIDNVISQTDNGYLDELIAYNKILLNRNALLKLIADTGRYDP 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G +I R + + + + + + + L Sbjct: 177 QMLEVYDEQLVLSGTRIFEKRKKFMEVFIGIFNRHYRFISDEAEMVELNY--------ES 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L ++A+ L + D RT G H+ DL A+ GS G+QK L+ + Sbjct: 229 QLLTGDFAQLLKKSTERDRALERTTNGVHKDDLHFTIHGMAMK-KFGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS----VF 355 LA ++ G+ P+LLLD+I LDE++ L ++V++ Q+F+T T +F Sbjct: 288 LAQYTFLNEQKGYKPLLLLDDIFDKLDENRTRKLMQMVSNNDFGQVFITDTSGERVSRIF 347 Query: 356 DSLNETAKFMRISNH 370 + L+ + ++ Sbjct: 348 NDLDVQIRIFKVDKG 362 >gi|319440152|ref|ZP_07989308.1| recombination protein F [Corynebacterium variabile DSM 44702] Length = 391 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 168/385 (43%), Gaps = 28/385 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FR++ASL L T+F G NG GKTNI+EA+ +L+ R + A + Sbjct: 1 MYLRSLHLGDFRSWASLDLELTPGVTVFAGPNGNGKTNIVEAVGYLAHLSSHRVSGDAAL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S S A G E A + I + R +N +R L +R + Sbjct: 61 VREGCDSARVSATAVNHGRELTAHLVI-----NARGSNKAAVNRTSLRNQRGLAGIVRTT 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---S 180 P + G +RR FLD++V A PR D+++++R RN LL + Sbjct: 116 MFAPEDLALVRGEPEQRRHFLDQVVAARYPRLAGVRADYDKVLRQRNALLKSASSPVAVA 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFD 237 +AQ+A LG +I ARV++++ L+ + E + + P + +S T +D + Sbjct: 176 DTLDVWDAQLAHLGGEIMSARVQVVHDLAPHVEESYARLAPGSRPAL-ISYTSTVDAELA 234 Query: 238 Q-----------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 + +L R + TL GPHR DL + Sbjct: 235 DVGVDPGGTYLVDPDVAEAVLLSRLAQRRNAEVERGITLTGPHRDDLQL-ILGTQPAKGF 293 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + + LA R + G P+++LD++ A LD +R AL + + Q+ Sbjct: 294 ASHGESWSFALTLRLASHR-MQRADGTEPLVILDDVFAELDRARRRALVDLAGEAE-QVL 351 Query: 347 MT-GTDKSVFDSLNETAKFMRISNH 370 +T D+ + L E A+ + H Sbjct: 352 ITAAVDEDIPADLREIAQVHAVRAH 376 >gi|120552948|ref|YP_957299.1| DNA replication and repair protein RecF [Marinobacter aquaeolei VT8] gi|166220714|sp|A1TWJ3|RECF_MARAV RecName: Full=DNA replication and repair protein recF gi|120322797|gb|ABM17112.1| DNA replication and repair protein RecF [Marinobacter aquaeolei VT8] Length = 373 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 162/378 (42%), Gaps = 20/378 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L FRN S + F + G NG GKT++LEAI +L GR FR + + V Sbjct: 1 MALVKLQTQHFRNLLSAPVEFSPSFNLLYGANGSGKTSVLEAIGYLGLGRSFRVSRHQAV 60 Query: 65 TRIGSPSFFSTFARVEGM-----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 G A G+ + I + L+++ +R + L H Sbjct: 61 VAHGQSKLTVFGALDSGLLAQESSEKVEHRIGISRDVSLKETQLRVDGEAVRSLSFLAMH 120 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 L +S + P + I +G +RR+FLD +VF ++P +R+ RN++L G D Sbjct: 121 LPVSVIDPGVFDIVAGGPGKRRQFLDWLVFHVEPSFSSLWQQVQRVTSQRNQMLRNGRLD 180 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGKFDQ 238 S ++Q L ++ R + + + + P ++ L + + Sbjct: 181 ESLMRVWDSQYGALAESLSDIRETVFQRFKIAFESVLAELDAPWVEGLKMDFYPGWDRST 240 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + L + R+ + TL GP+R+D+ + + + + S G+QK +++ Sbjct: 241 ALTEV-------LVNHREQERRMGHTLYGPNRADIRLKFGGRPVAETF-SRGQQKTLVIL 292 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + +A +++S+ G LLD+I+A LD R L R + ++ Q+F+T + D+L Sbjct: 293 MKIAQGKVLSD-LGKQVTFLLDDINAELDVRHRVMLARNLQELRCQVFITSIEHPEPDTL 351 Query: 359 NETA-----KFMRISNHQ 371 + + + Q Sbjct: 352 WHDGDTPEYRMFHVEHGQ 369 >gi|294672977|ref|YP_003573593.1| DNA replication and repair protein RecF [Prevotella ruminicola 23] gi|294473002|gb|ADE82391.1| DNA replication and repair protein RecF [Prevotella ruminicola 23] Length = 366 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 154/375 (41%), Gaps = 23/375 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ ++N A L F + +G NGVGKTN+L+AI +LS + V Sbjct: 1 MILEKLSVINYKNIAEATLDFSPKINCLIGQNGVGKTNVLDAIYYLSFCHSANNPIDSQV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF EG D+ I + + + N R + E + + Sbjct: 61 IRHGAE-FFVLEGAYEG-----DLHIYCGMKRGTK-KHFKRNKKEYRRLSEHIGLIPVVV 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + PS + G S ERRR +D ++ + + M + + ++ RN +L + + Sbjct: 114 VSPSDTLLIEGGSEERRRLMDMVIAQYEHGYMEAMNRYNKALQQRNAMLKLDEEPNLDVI 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S E QMA G +I +R + L+ + + + +++L + Sbjct: 174 SLFEEQMAYEGERIYKSRKAFVEELTPIFQRIHETISGNREQVALNYVSHCQRGP----- 228 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + R D +L G HR DL + + GS G+ K ++ + LA Sbjct: 229 ---LLEVIQRDRFKDRAIGYSLHGVHRDDLEITLGGHLMKRE-GSQGQNKTFVIALKLAQ 284 Query: 304 ARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + T + P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 285 FDFLKRTNSKTTPLLLLDDIFDKLDAQRVEQIVKLVAGDDYGQIFITDTNRDHLDLILSR 344 Query: 362 ----AKFMRISNHQA 372 K + + Sbjct: 345 QTLDYKIFHVDKGEI 359 >gi|326329134|ref|ZP_08195462.1| RecF protein [Nocardioidaceae bacterium Broad-1] gi|325953021|gb|EGD45033.1| RecF protein [Nocardioidaceae bacterium Broad-1] Length = 382 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 89/385 (23%), Positives = 169/385 (43%), Gaps = 24/385 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y ++ + +A T FVG NG GKTN++EAI +LS + R A+ A + Sbjct: 1 MYVSHLSLHDFRSYPNVEVPLEAGVTAFVGRNGQGKTNLVEAIDYLSRLQSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A V ++++E R+ + +IN + +L +R Sbjct: 61 VRAGAEQAVVRAAVVRDGRTA---TLEVEINAGRANKA-RINKSPLPRTRDLVGLVRTVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G +RRRFLD ++ PR D++R+++ RN LL Sbjct: 117 FSPEDLTLVKGDPSDRRRFLDDLMILRAPRLAGVRSDYDRVLKQRNSLLKTAGLARGSAR 176 Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGFL 232 + + + +A +G +I R+ ++ AL + + + + +++ + Sbjct: 177 EGALATLAVWDDHLATIGAEILSQRLSLVEALKPYVGKAYETVARGASRDDAEITYKPVV 236 Query: 233 D--GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHG 287 + S L++ ++L +K + +L+GPHR DL++ A + Sbjct: 237 ELVETTTPSVETLRQAILEELARRQKDELDRGISLVGPHRDDLLLHISAGAERLPVKGYA 296 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + LA L+ G PIL+LD++ A LD +R L +V D Q+ + Sbjct: 297 SHGESWSFALALRLAAYDLL-RADGDDPILILDDVFAELDSQRRVQLAELVADAE-QVLV 354 Query: 348 TGTDKSVFDSLNETAKFMRISNHQA 372 T + A++ + + Sbjct: 355 TAAVPEDVPAALAGARY-HVKAGEV 378 >gi|300781941|ref|YP_003762232.1| DNA replication and repair protein RecF [Amycolatopsis mediterranei U32] gi|299791455|gb|ADJ41830.1| DNA replication and repair protein RecF [Amycolatopsis mediterranei U32] Length = 384 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 99/391 (25%), Positives = 168/391 (42%), Gaps = 33/391 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR++ L + T+ VG NG GKTN+LEAI +++ R A+ A + Sbjct: 1 MYLRHLQVTDFRSWPQADLALEPGPTVLVGQNGRGKTNLLEAIGYVATLGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G A V +++++LE R+ R V R D L LR Sbjct: 61 IRHGCERALVRVAVVNDD---RELTVELEITAGRANRARVNRGAVGRPRDVL-GILRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------EGYF 178 P + G ERRRFLD ++ PR+ D+E++++ RN LL G Sbjct: 117 FSPEDLALVRGDPGERRRFLDELLVLRAPRYAGVRADYEKVLKQRNALLKTAGKRRTGRE 176 Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV---QKENFPHIKLSLTGFL 232 D S + +AE G ++ AR+ ++ L+ ++ P K++ L Sbjct: 177 DPYALSTLEVWDDHLAEAGAELLAARLNLVADLAPHAASAYMGVAPDSRP-AKITYRSSL 235 Query: 233 DGKFDQSF----------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 +++ LK+ K L + RK + +L+GPHR +L + +A Sbjct: 236 GAAMPETYGVPDGERAQPEVLKDVLLKALGEARKAELERGISLVGPHRDELEL-ILGEAP 294 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S GE + + L L+ G P+LLLD++ A LD +R L V Sbjct: 295 AKGYASHGESWSFALALRLGSYELLRAEAGE-PVLLLDDVFAELDRKRRARLAE-VAASA 352 Query: 343 SQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372 Q+ +T D+ V L T +++ + Sbjct: 353 EQVLVTAAVDEDVPGELAGT--RFVVADGEI 381 >gi|326388134|ref|ZP_08209737.1| recombination protein F [Novosphingobium nitrogenifigens DSM 19370] gi|326207300|gb|EGD58114.1| recombination protein F [Novosphingobium nitrogenifigens DSM 19370] Length = 395 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 139/369 (37%), Positives = 199/369 (53%), Gaps = 14/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FRN+A+ RL A + VG+NG GKTN+LEAIS SPGRG RRA AD+ Sbjct: 37 MALTRLSLRDFRNHAATRLDGMATFNVLVGENGAGKTNVLEAISLFSPGRGMRRAHPADM 96 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F+ A +E + + T R+VR IN L + L ++W Sbjct: 97 ASNKGAGDFAVAAELEDGAVQLNTATTPATPGRRTVR---INGAET-PATRLAEWLAMTW 152 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 L P+MDR+F+ + RRRFLDR+V A +P H R +E +R RNRLL E D W Sbjct: 153 LTPAMDRLFAEGATARRRFLDRLVLAGEPGHARIATRYEGALRERNRLLGEADEPDPVWL 212 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++E QMAE G ++ +R ++ L++ + +++ P + L + D S Sbjct: 213 DALETQMAETGAQLAASRRALVERLNTALA---AQDDGPFARPILAYNGETPVDAS---- 265 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +A L +GR+ D + RTL GPHR DL V K AH STGEQK +L+ I LAH Sbjct: 266 --AFAAALRNGRRRDRAAGRTLTGPHRDDLDVVMAAKNAPAAHCSTGEQKALLISIVLAH 323 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 A L +LLLDEI+AHLD +R+AL+ + G+Q++MTGT+ S F L A Sbjct: 324 AALPDAGGERPRLLLLDEIAAHLDPLRRSALYERLAASGAQVWMTGTEPSPFADLPAPAA 383 Query: 364 FMRISNHQA 372 F R+ + Sbjct: 384 FWRVDEGKV 392 >gi|62185059|ref|YP_219844.1| recombination protein F [Chlamydophila abortus S26/3] gi|81312775|sp|Q5L648|RECF_CHLAB RecName: Full=DNA replication and repair protein recF gi|62148126|emb|CAH63883.1| DNA replication and repair protein [Chlamydophila abortus S26/3] Length = 367 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 88/368 (23%), Positives = 153/368 (41%), Gaps = 10/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRNY + G+N GKTN++EA+ LS GR FR + + Sbjct: 1 MNILSLRLKNFRNYKEAEVSLSPNINYIFGENAQGKTNLIEALYVLSLGRSFRTSHLTEA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GS FF +E + L T D+ + + + I+ + +L + I Sbjct: 61 IFFGSSYFF-----LEMTFEKDGVPHTLSTYVDKHGKKIFCDQSPIKTLSQLIGMIPIVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + +G +RR FL+ ++ DP+++ + + R + RN LL +S S Sbjct: 116 FSAKDRCLIAGAPSDRRLFLNLLLSQCDPQYKHSLSYYHRALLQRNTLLKTKQ--TSTLS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A LG + ++R L+ LI + + L + S A+K Sbjct: 174 VWDEQLATLGSYLCLSRYTCCAQLNQLIQTLWNNSLSERLFIKFKSSLIKQCKISQEAVK 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E K+L D T +GPHR D + D + S G++ +L + LA + Sbjct: 234 NELHKQLTASLHRDLELGNTSVGPHREDFTLMINDLPV-AQFSSEGQKHSLLAVLKLAES 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 I + P+ +D+I A LD + + L + +G Q +T T +L+E + Sbjct: 293 LYIKSLHNVYPLFCMDDIHAGLDNQRISQLLGLAPSLG-QTLITSTTLPH-QTLSEANRI 350 Query: 365 MRISNHQA 372 ++ Q Sbjct: 351 FSVNQAQI 358 >gi|157373149|ref|YP_001471749.1| DNA replication and repair protein RecF [Shewanella sediminis HAW-EB3] gi|189039644|sp|A8FP48|RECF_SHESH RecName: Full=DNA replication and repair protein recF gi|157315523|gb|ABV34621.1| DNA replication and repair protein RecF [Shewanella sediminis HAW-EB3] Length = 360 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I FRN S +L+ + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLTRLHIETFRNITSAQLLPGEGINLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S + FA + ++ + I ++ + V+ I+ ++ + L + L I Sbjct: 61 IQH-SDDKLTLFANLNVLDKESKIGLRRFRSGETEVK---IDGDKVKRLSTLAESLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F D ++ +R+++ RN+LL S Sbjct: 117 ITPESFALLFEGPKSRRQFIDWGAFHCDKSFHSAWVNVKRILKQRNQLLKNETS-YSQIQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ + R +N+L+ + + E P + + ++ K Sbjct: 176 FWDKELVRYSEVVTDIRTRYVNSLNEQLKGII-GEFLPLVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L D S T GPH++DL + + A S G+ K+++ + +A Sbjct: 228 TDYAQLLEMQYPRDLASGNTGSGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL-NETA 362 +L+ I L+D++ A LD R L + + D G+Q+F+T + ++ DSL + Sbjct: 287 KLLKQQIDKNSIYLVDDLPAELDAKHRQLLLQQLIDTGAQVFVTAIEPAAILDSLITPPS 346 Query: 363 KFMRISNHQALCI 375 K + + + I Sbjct: 347 KTFHVEHGRVTVI 359 >gi|258646401|ref|ZP_05733870.1| DNA replication and repair protein RecF [Dialister invisus DSM 15470] gi|260403802|gb|EEW97349.1| DNA replication and repair protein RecF [Dialister invisus DSM 15470] Length = 355 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 166/367 (45%), Gaps = 14/367 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ ++ E RN+ + T+ G NG GKTNI+E+I F S G+ FR ++ ++ Sbjct: 1 MRCGKTHLIEIRNFEDFSIDPAENMTVLTGKNGTGKTNIIESIYFASVGKSFRTSNDEEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+ + +I IKL + + IN+ + EL R Sbjct: 61 IRLNKEEG-TILLDFSVRGVTHEIKIKLSRN---KGKKILINETATKK-RELMGMFRTVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182 P ++ G RRRF+D + + PR+ ++ + R ++ RN E F ++ Sbjct: 116 FTPDDLQLIKGAPQNRRRFIDLEISQVSPRYYEEILRYGRAVQQRNAAFKEARFHGFTAD 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+A+ I R+E I ++ ++ + + G ++ F Sbjct: 176 VDVWDMQIAKGASYIVKKRMETIGKINEIVSSMESLLTDEKESILIKYRKSGNQEERFD- 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +E Y +KL R+ DS T IGPHR DLI I+ ++GS G+Q+ ++ + LA Sbjct: 235 -EEWYLEKLALSREEDSRFCHTSIGPHRDDLIFLMNGNDIS-SYGSQGQQRTAILSVKLA 292 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + TG P+LLLD++ + LD+++R+ALF + + Q +T D +SL Sbjct: 293 ELEFVKKETGEYPLLLLDDVGSELDKERRDALFSYLIEKEIQTIITTAD----ESLGAYG 348 Query: 363 KFMRISN 369 K ++I Sbjct: 349 KEIKIEG 355 >gi|224541291|ref|ZP_03681830.1| hypothetical protein CATMIT_00451 [Catenibacterium mitsuokai DSM 15897] gi|224525795|gb|EEF94900.1| hypothetical protein CATMIT_00451 [Catenibacterium mitsuokai DSM 15897] Length = 364 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 159/372 (42%), Gaps = 20/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK LN+ +FRNY F I +GDN GKTNILEAI LS R F+ ++ Sbjct: 1 MEIKTLNLIQFRNYEKQTFHFHPLVNIIIGDNAQGKTNILEAIYLLSTTRSFKSRMLDEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ++ RV G L+ + + IND + + + + Sbjct: 61 IMFDQ-----SYTRVSGHIVNGTRPYDLKVVVSKEGKKAFINDKAVSKTSDYLGYFNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSS 181 P ++ G RR +D + I P + + + +LM+ RN+ L +G+ + Sbjct: 116 FTPQDLQLIKGSPKMRRTLIDTEISKISPIYMFNLNKYNKLMKERNKYLKMLYDGHKEPD 175 Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + +MAEL + R++ I L+ + + + KL L K Sbjct: 176 MYLEVLSEEMAELEEDLIQRRMKFIELLNEISGQMYAYISG-KEKLVLRYHTQFK----- 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 KE K K D T+ G H+ DL + + D+ S G+Q+ +++ + Sbjct: 230 DISKEGILDKYKKNYKRDIFQGTTVDGIHKDDLKI-FLDENDAGMFASQGQQRSIILSMK 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSL 358 +A ++ G P+LLLD++ + LDE+++ L ++ Q F+T T D SL Sbjct: 289 IALVEIVKMQIGEYPVLLLDDVLSELDEERKMKLLNLIDHK-VQTFITTTHFDLGYHHSL 347 Query: 359 NETAKFMRISNH 370 ++ A +RI Sbjct: 348 DD-ALVLRIEKG 358 >gi|91791372|ref|YP_561023.1| DNA replication and repair protein RecF [Shewanella denitrificans OS217] gi|123357292|sp|Q12TC6|RECF_SHEDO RecName: Full=DNA replication and repair protein recF gi|91713374|gb|ABE53300.1| DNA replication and repair protein RecF [Shewanella denitrificans OS217] Length = 360 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 164/373 (43%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I FRN A+ L+ + G NG GKT++LEAI FL GR FR V Sbjct: 1 MSLQRISIESFRNIAAANLLPSEGLNLIYGHNGSGKTSVLEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + FA++ G + + ++ + V+ I+ ++ + L + L I Sbjct: 61 IRHDEDK-LTLFAQLSHHNGESKVGLRRHRNGEIEVK---IDGDRVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F D + + +R+++ RN+LL G + Sbjct: 117 ITPESFSLLFEGPKARRQFVDWGAFHSDEQFYTAWSNVKRILKQRNQLLRNGSSYGNIL- 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ ++ R +++L+ L+ ++ E P + +S++ L Sbjct: 176 FWDKELVRYAEQVTQIRNHYVDSLNELLKGIIE-EFLPQVNISISFTRGWDSKTDLALL- 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L D + T+ GPH++DL + + + A S G+ K+++ + +A Sbjct: 234 ------LESQYSRDLATGHTVSGPHKADLRLRVGNLPVQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362 +L+ I L+D++ + LD R L + +T+ G+QIF+T + + DSL Sbjct: 287 KLLKQQKDKQSIYLVDDLPSELDAQHRQLLLKQLTETGAQIFVTAIEPAAIVDSLASPPN 346 Query: 363 KFMRISNHQALCI 375 K + + I Sbjct: 347 KVFHVEQGRVTVI 359 >gi|260428922|ref|ZP_05782899.1| DNA replication and repair protein RecF [Citreicella sp. SE45] gi|260419545|gb|EEX12798.1| DNA replication and repair protein RecF [Citreicella sp. SE45] Length = 368 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 122/361 (33%), Positives = 187/361 (51%), Gaps = 13/361 (3%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FR++ + DA+ G NG GKTN++EA+S LSPGRG RRA+ ++ R + Sbjct: 13 FRSHRRAEIAVDARPVAIYGPNGAGKTNLIEAVSLLSPGRGMRRAAAQEIARRPEALGWR 72 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 A + +G+ +I I+ E + R + I+ L + R+ WLVPSMDR++ Sbjct: 73 IGAELHAPDGVHEIDIRAEAG---AARQVSIDGKPA-PQTALARITRVLWLVPSMDRLWI 128 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 RRRFLDRM + P H + +E+ MR RNRLL + D+ W +++E QMA+ G Sbjct: 129 EAPEGRRRFLDRMTLSFFPDHADASLTYEKAMRERNRLLKDQVRDAHWYAALEGQMAQAG 188 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 ++ R + + FP +L L + E L + Sbjct: 189 AQLQSNRQA--ALARLAQAQEGAETQFPAAELELVST-----EADIPETAEGLRAALSES 241 Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314 R D + RTLIGPHR+DL + K ++ + STGEQK +L+ + LA+AR ++ G Sbjct: 242 RFRDMAAGRTLIGPHRADLHGVFAAKGVSASDCSTGEQKALLISLILANARALAADLGAP 301 Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI--SNHQA 372 PILLLDE++AHLD +R AL+ + +G+Q +MTGT +F L A+ + + Q+ Sbjct: 302 PILLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFGELGARAQRLEVREEGGQS 361 Query: 373 L 373 Sbjct: 362 F 362 >gi|253698659|ref|YP_003019848.1| DNA replication and repair protein RecF [Geobacter sp. M21] gi|259563661|sp|C6E7Q7|RECF_GEOSM RecName: Full=DNA replication and repair protein recF gi|251773509|gb|ACT16090.1| DNA replication and repair protein RecF [Geobacter sp. M21] Length = 364 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 162/371 (43%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L ++ FRN ++ L + +F G+NG GKTN+LE+I L+ + F++A A++ Sbjct: 1 MKLIKLKLASFRNLQNIELAPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQARNAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G FA V+G + ++ ++ + +++ ++ +D+ +L + Sbjct: 61 IAFGGE-----FALVKGTVERDQVRREIAVLIEKQGKKAKVDAKLMTRLDDFFGNLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRR+LDR VF D + D+ ++++ RN LL +++ Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLGYLTAYHDYAKILKNRNALLK--VNETAGIE 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL- 243 Q+ + + + R ++ + L+ + + + + + L G + F Sbjct: 174 VWTEQLVQAALLVIERRKAYLDRIGRLLQGFYSEISGNDETVQIEYRLHGVDARLFAEDP 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E + L + T IGPHR DL + S G+Q+ ++ + +A Sbjct: 234 AEALNQALRAHAAEERRRGSTAIGPHRDDLYFGLNGRG-ARQFASQGQQRSFVLALKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETA 362 I+ P+LLLD++++ LD ++ L + Q+F+T T D + Sbjct: 293 IEHITRCFEAPPVLLLDDMTSELDRERNRNLMEFLKKREMQVFITTTSLHNVDVDELQDN 352 Query: 363 KFMRISNHQAL 373 + RI + L Sbjct: 353 RTFRIKEGKIL 363 >gi|153807585|ref|ZP_01960253.1| hypothetical protein BACCAC_01867 [Bacteroides caccae ATCC 43185] gi|149129947|gb|EDM21159.1| hypothetical protein BACCAC_01867 [Bacteroides caccae ATCC 43185] Length = 369 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 149/373 (39%), Gaps = 20/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + + F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEEVEIDFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G +I ++ R + + N + L + Sbjct: 61 IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYGRFSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 117 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSEFPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + + + L+ + Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFIKEFIPIFQSFYSFISQDKESVGLSYESHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L R+ D + +L G H+ +L + + I GS G+ K LV + LA Sbjct: 231 --TSLLDVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNREHLDRILHK 347 Query: 359 -NETAKFMRISNH 370 K R+ Sbjct: 348 VGSDYKIFRVEQG 360 >gi|160932421|ref|ZP_02079811.1| hypothetical protein CLOLEP_01256 [Clostridium leptum DSM 753] gi|156868380|gb|EDO61752.1| hypothetical protein CLOLEP_01256 [Clostridium leptum DSM 753] Length = 368 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 156/372 (41%), Gaps = 10/372 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L ++RN L+ Q + GDN GKTN+LEA+ + GR FR A ++ Sbjct: 1 MKVNRLGFRDYRNLKENELIPGPQVNVICGDNAQGKTNLLEAVWLFTGGRSFRGARDQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S + E E I + + R Q+N V L Sbjct: 61 IAFSSRAGAVLALDFEAEEREQTAKITIGRGAKK--RAAQLNGVDQPAASSLIGKFCAVV 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P + RR+FLD + P + R + + R + RN LL + + S Sbjct: 119 FSPDHLSLVKEGPSMRRKFLDAALCQRKPAYARLLSQYSRTLAQRNTLLKDISYHSELLE 178 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + +++ LG I I R + LS E + + ++ D Sbjct: 179 TLEIWDEKLSGLGAAIIIERKRYLERLSEAAGEIYDGISQGRERFAVRYDSGLLRDGGEE 238 Query: 242 A-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A +E L +GRK D + T GPHR DL+V +K+ +GS G+Q+ ++ + Sbjct: 239 AGYRERLFSLLQNGRKEDLNAGFTTKGPHRDDLLVTVQEKS-AREYGSQGQQRSCVLALK 297 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 LA A L++ G P++LLD++ + LD +++ L + G Q+F+T D + L++ Sbjct: 298 LAEAALLAEALGEKPVILLDDVMSELDASRQDYLLNKIQ--GWQVFITCCDPNSISGLSQ 355 Query: 361 TAKFMRISNHQA 372 + + N + Sbjct: 356 -GRTFYVENGEI 366 >gi|282881520|ref|ZP_06290190.1| DNA replication and repair protein RecF [Prevotella timonensis CRIS 5C-B1] gi|281304631|gb|EFA96721.1| DNA replication and repair protein RecF [Prevotella timonensis CRIS 5C-B1] Length = 370 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 94/378 (24%), Positives = 159/378 (42%), Gaps = 23/378 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N L F ++ +G NG GKTN+L+AI +LS R + + Sbjct: 1 MLLKKISILNYKNIEVADLEFSSKLNCLIGHNGEGKTNLLDAIYYLSFCRSAFNPIDSQL 60 Query: 65 TRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 G F T+ R +G E L +K TR + + ND + + E + + Sbjct: 61 ILHGRDFFSLQGTYLRDDGDEELIHCGLKRGTR-----KRFKRNDKDYKRLSEHIGLIPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSS 181 ++ PS + G S ERRRFLD ++ ++ + + + + + RN LL E D S Sbjct: 116 IFVSPSDTILIEGGSEERRRFLDMVISQLNRTYIEHLSRYNKALAQRNALLKNEDAPDLS 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 +E +MA G I R I + + H ++SL + Sbjct: 176 LLEILEQEMAVQGEAIFAIRQSFIEEFIPVFQSIYDSISGHHEEVSLQYISHAQRGP--- 232 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + R D +L G HR DL + D + GS G+ K ++ + L Sbjct: 233 -----LLDVIQRDRMKDRAVGYSLHGVHRDDLQMMIGDYQMKRE-GSQGQNKTYVLALKL 286 Query: 302 AHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSLN 359 A + T+ P+LLLD+I LD ++ + +VT QIFMT T+++ D + Sbjct: 287 AQFDFLQRTSSATQPLLLLDDIFDKLDAERVERIVDLVTSTTYGQIFMTDTNRAHLDRIL 346 Query: 360 E----TAKFMRISNHQAL 373 K ++N + Sbjct: 347 SSHSFDYKLFVVNNGDIV 364 >gi|169627112|ref|YP_001700761.1| recombination protein F [Mycobacterium abscessus ATCC 19977] gi|169239079|emb|CAM60107.1| DNA replication and repair protein RecF [Mycobacterium abscessus] Length = 401 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 90/383 (23%), Positives = 160/383 (41%), Gaps = 20/383 (5%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + ++ L + +FR++ + L + T+FVG NG GKTN++EA+ + S R A+ A Sbjct: 18 TEVYVRQLGLRDFRSWERVNLELEPGRTVFVGPNGYGKTNLVEALWYSSTLGSHRVATDA 77 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + R G+ + V +++I LE R+ + ++N +R E+ L Sbjct: 78 PLIRTGAERAVVSTIVVNDG---RELAIDLEIAAGRANKA-RVNRSPVRSPREVLGILHA 133 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------EG 176 P + G +RRRFLD ++ PR D+++++R R LL Sbjct: 134 VLFAPEDLSLVRGDPADRRRFLDDLLIQRRPRMAGVRADYDKVLRQRTALLKTAMAALRQ 193 Query: 177 YFDSS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGF 231 D S + + G ++ AR+E++ L L+ + Q ++ Sbjct: 194 RHDQSVLDTLDVWDGHLVAHGAELLSARIELVGELHPLVEKSYQLLAPASRPADIAYRSS 253 Query: 232 LDG-KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 ++G + S L + L R + L+GPHR DL + D S G Sbjct: 254 VEGVEAGLSVEHLADALQAGLVAKRSAEIERGVCLVGPHRDDLELRLGDGPAK-GFASHG 312 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349 E + + LA L+ G P+L+LD++ A LD +R +L + D Q+ +T Sbjct: 313 ESWSFALALRLAAFDLL-RADGTDPVLMLDDVFAELDGARRRSLATVAADAE-QVLVTAA 370 Query: 350 TDKSVFDSLNETAKFMRISNHQA 372 V + L+ + + A Sbjct: 371 VPDDVPEELSARTVTVEVQEGPA 393 >gi|261493354|ref|ZP_05989880.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496620|ref|ZP_05993000.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307823|gb|EEY09146.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310998|gb|EEY12175.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 372 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 78/372 (20%), Positives = 147/372 (39%), Gaps = 18/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN L F VG NG GKT++LE+I +L GR F+ + Sbjct: 12 MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIFYLGHGRSFKSHISNRI 71 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F +++ + + I+ + + L+IN + +L L + Sbjct: 72 IHYDKDDF-VLHGKIDEAKHSWSVGIQKFRSGETT---LKINGEDGNKIADLAHLLPMQV 127 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F P + RL++ RN L + Sbjct: 128 ITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQRNSAL-QQVRSYQELK 186 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ + ++ R E AL I + Q P I++ L+ + Sbjct: 187 AWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQ-FFLPEIEIGLSFHQGWEK-------G 238 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D T+IG ++D + S G+ K+++ + LA Sbjct: 239 ADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 297 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD--SLNETA 362 + + L+D+ ++ LD KR L + + GSQ+F+T + + + + Sbjct: 298 EHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQDQLNQMQWQDRS 357 Query: 363 K--FMRISNHQA 372 + N + Sbjct: 358 DDCLFTVKNGEI 369 >gi|159045915|ref|YP_001534709.1| recombination protein F [Dinoroseobacter shibae DFL 12] gi|157913675|gb|ABV95108.1| DNA replication and repair protein RecF [Dinoroseobacter shibae DFL 12] Length = 361 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 125/361 (34%), Positives = 196/361 (54%), Gaps = 10/361 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++S FR++ L L D + + G NG+GKTN+LEA+SFLSPGRG RRA V Sbjct: 4 VAVTSLSLSHFRSHTHLTLSLDERPVVLHGPNGIGKTNVLEALSFLSPGRGLRRAKTEAV 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + A V+ ++ + D + R +Q++ + + L + + + W Sbjct: 64 GQSEAGLGWRVSALVKSGGREREV---MTRSDAGASRTVQLDGKPVPQMA-LAELVPMVW 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 LVP+MDR++ + RR+FLDRM H R ++ +ER MR RNRLL +G D W Sbjct: 120 LVPAMDRLWIEAAEGRRKFLDRMTLNFVTTHGRDVLAYERAMRDRNRLLKDGVRDPHWYH 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++EAQMAE G +I R ++ + + FP L + + ++ K Sbjct: 180 ALEAQMAEAGARITQNRQRCLSEIE--AAQADATTAFPFAGLQI----EAHDGRAPLRTK 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E L R MD + RTL GPHR DL Y K STGEQK +L+ + L+ + Sbjct: 234 GEIENTLRCNRYMDQTAGRTLDGPHRDDLAAVYVSKGTPARDCSTGEQKALLISLILSMS 293 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R + + G AP++LLDE++AHLD++++ AL+ + +G+Q +MTGT +F L E A+F Sbjct: 294 RAVKSLVGQAPLVLLDEVAAHLDQERQRALYDEICALGAQAWMTGTGAELFQPLGERAQF 353 Query: 365 M 365 + Sbjct: 354 I 354 >gi|163751707|ref|ZP_02158926.1| DNA replication and repair protein RecF [Shewanella benthica KT99] gi|161328446|gb|EDP99602.1| DNA replication and repair protein RecF [Shewanella benthica KT99] Length = 365 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 92/373 (24%), Positives = 167/373 (44%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I FRN AS +L+ + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLTRLHIETFRNIASAQLLPGEGINLIYGLNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S + FA + + I ++ + V+ I+ ++ + L + L I Sbjct: 61 IQH-SDDKLTLFANLTVQGKESKIGLRRFRSGETEVK---IDGDKVKRLSTLAEFLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F D R I+ +R+++ RN+LL + Sbjct: 117 ITPESFALLFEGPKSRRQFIDWGAFHCDERFHSAWINVKRILKQRNQLLKNE-ASYAQIQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ + R + +N+L+ L+ ++ E P + + ++ K Sbjct: 176 YWDRELVRYSEVVTDIRTQYVNSLNELLKGIIE-EFLPQVDVKISFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L D S T GPH++DL + + A S G+ K+++ + +A Sbjct: 228 TDYAQLLETQYPRDVSSGNTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN-ETA 362 +L+ I L+D++ + LD R L + +TD G+Q+F+T + ++ DSLN + Sbjct: 287 KLLKQQIDKNSIYLVDDLPSELDAKHRQLLLQQLTDTGAQVFVTAIEPAAILDSLNTPPS 346 Query: 363 KFMRISNHQALCI 375 K + + I Sbjct: 347 KVFHVEQGRVTVI 359 >gi|289649102|ref|ZP_06480445.1| recombination protein F [Pseudomonas syringae pv. aesculi str. 2250] Length = 367 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 160/374 (42%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHDTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|256374164|ref|YP_003097824.1| recombination protein F [Actinosynnema mirum DSM 43827] gi|255918467|gb|ACU33978.1| DNA replication and repair protein RecF [Actinosynnema mirum DSM 43827] Length = 371 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 166/378 (43%), Gaps = 20/378 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR++ L F+ + VG NG GKTN++EA+ +++ R AS A + Sbjct: 1 MYVRHLQVTDFRSWEHADLAFEPGVNVLVGRNGHGKTNLVEALGYVATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A V ++ ++LE R+ R ++N + ++ LR Sbjct: 61 IRSGAQRAVVRTAVVNEG---RELLVELEITPGRANRA-RVNRGPVPRPRDVLGILRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G ERRRFLD ++ PR+ D+ER++R R LL + Sbjct: 117 FAPEDLSLVRGDPGERRRFLDELLTLRAPRYAGVRSDYERVLRQRGALLKTVRSVRSAEL 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFD 237 + +A+ G ++ AR++++ A++ + E+ P + LS L F Sbjct: 177 GTLDVWDGHLAKHGAELLAARLDLVAAIAPHAAAAYAEVAPESRPAL-LSYRSSLGEAFP 235 Query: 238 --QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 L++ +L R + L+GPHR DL + + + S GE Sbjct: 236 GTHDREVLEDALLAELHRLRPQEIDRGVCLVGPHRDDLELSLGELPAK-GYASHGESWSF 294 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSV 354 + + L L+ G P+L+LD++ A LD +R L + V Q+F+T + V Sbjct: 295 ALALRLGAYELLREE-GAEPVLVLDDVFAELDRGRRRQLAK-VAAAAEQVFITAAVAEDV 352 Query: 355 FDSLNETAKFMRISNHQA 372 + L+ A + + + Sbjct: 353 PEELD--AARFHVGHGEV 368 >gi|227541368|ref|ZP_03971417.1| recombination protein F [Corynebacterium glucuronolyticum ATCC 51866] gi|227182919|gb|EEI63891.1| recombination protein F [Corynebacterium glucuronolyticum ATCC 51866] Length = 374 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 161/371 (43%), Gaps = 12/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++ L L T+F G NG GKTNI+E+I +L+ R A + Sbjct: 1 MFVRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V G ++ +++ + + Q+N +R EL +R Sbjct: 61 VRAGADVAQLAATVVSGG---RELVVRMTVKP-HAANLAQLNRTRLRHPRELLGGVRCVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 P + +G RRR +D ++ PR ++ER+++ RN LL + + Sbjct: 117 FSPEDLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSM 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 ++Q+A LG ++ AR +I L L+ E PH + +L ++ Sbjct: 177 HGMLDVWDSQLASLGAELVTARSALITRLHPLVEAAY-LEIAPHSRPPAISYLTRDQAET 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + L + R + + RTLIGPH+ DL + Y +A S GE + + Sbjct: 236 TADTEALLLTSLAEIRPREIDAGRTLIGPHKDDLGL-YLGEAPAKGFASHGETWSFAIAL 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 +A RL S T G PIL+LD++ A LD +R AL ++ + T + L Sbjct: 295 KIAVFRLFS-TGGHIPILILDDVFAELDNPRRQALTSMIRSAEQVLITTAVPTDIPTDLT 353 Query: 360 ETAKFMRISNH 370 T + + + Sbjct: 354 HTDHTVLLKDG 364 >gi|288800759|ref|ZP_06406216.1| RecF protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332220|gb|EFC70701.1| RecF protein [Prevotella sp. oral taxon 299 str. F0039] Length = 369 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 158/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + ++N + L + F+G NGVGKTN+L+A+ +LS R + V Sbjct: 1 MILKKITLLNYKNIEDITLDLSPKMNCFIGHNGVGKTNMLDAVYYLSFCRSSSNTVDSQV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FF ++ R + + + N + + + + + + Sbjct: 61 MMHD-KDFFVLEGLYTNEANDEELIYCGMKRGSK--KHFKRNKKEYKRLSQHIGFIPLVF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 + PS + G S +RRRFLD ++ +D + ++ + + ++ RN LL + D++ Sbjct: 118 VSPSDVALIEGPSEDRRRFLDIVISQLDVTYMEALLRYSKALQQRNALLKQENEPDNTLI 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S E +MAE G + R+ + + + Q+ + +SL + Sbjct: 178 SLFEEEMAEQGTIVYQKRLAFVENFIPVFQQIYQQISGGKETVSLNYISHCQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + + R D +L G HR DL + + GS G+ K ++ + LA Sbjct: 230 RGDLLEVIQRDRFKDRAVGYSLHGIHRDDLEMLLGGYQMK-KEGSQGQNKTFVLALKLAQ 288 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE- 360 + + P+LLLD+I LD ++ + +V D QIF+T T++ DS+ + Sbjct: 289 FDFLKRTASKTTPLLLLDDIFDKLDANRVERIVNLVANDSYGQIFITDTNRDHLDSILKM 348 Query: 361 ---TAKFMRISNHQA 372 K + N Q Sbjct: 349 GNFDYKLFHVDNGQI 363 >gi|317054735|ref|YP_004103202.1| DNA replication and repair protein RecF [Ruminococcus albus 7] gi|315447004|gb|ADU20568.1| DNA replication and repair protein RecF [Ruminococcus albus 7] Length = 376 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 81/378 (21%), Positives = 148/378 (39%), Gaps = 15/378 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+++ F+N ++ + + IF G N GKTN++EAI S R FR + Sbjct: 1 MFITDLSVNGFKNLKNIEIKPHEKINIFCGKNAQGKTNLIEAIWLCSGARSFRSTKDRRM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + DI + + + + + +N V ++ +L L Sbjct: 61 I-GDDEQVMEICLSFKNSFREQDIRYAM-AKPNIKEKSVFLNGVKLKAPSKLFGGLNCVI 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P + G RRRF D V I + +E+L+ RN LL G Sbjct: 119 FTPEDLELSKGSPDNRRRFADLSVSQIKNSYSAVTEKYEKLIDQRNTLLKNISYGRGRRE 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-------LDG 234 + Q+A++G I++ R L ++ + + + +L + + L G Sbjct: 179 ELEMWDIQLAQMGAYISLLRFNYTRKLCAIAKKLYSEISGGSEELDIDYYSTVYDTKLLG 238 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 L E+Y L + D + T G HR DLI + S G+ + Sbjct: 239 AASVYTGELTEQYLNVLKNNIDDDIRAGFTQKGVHRDDLICRINGSPVR-EDASQGQHRS 297 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 V + + L+ A ++ P++LLD++ + LD ++ + + D+ Q+F+T D ++ Sbjct: 298 VALIMKLSQAYILHEEIDDHPVILLDDVLSELDPSRQKFVISKIHDM--QVFITCCDMNI 355 Query: 355 FDSLNETAKFMRISNHQA 372 + K I Q Sbjct: 356 PFDEKQHGKIFNIEKGQI 373 >gi|71736050|ref|YP_272318.1| recombination protein F [Pseudomonas syringae pv. phaseolicola 1448A] gi|97180865|sp|Q48QJ8|RECF_PSE14 RecName: Full=DNA replication and repair protein recF gi|71556603|gb|AAZ35814.1| DNA replication and repair protein RecF [Pseudomonas syringae pv. phaseolicola 1448A] Length = 367 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 IQYVQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + ++ + Sbjct: 177 AAWDRELCYASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 348 PVALFHVEQGRITQ 361 >gi|134297885|ref|YP_001111381.1| recombination protein F [Desulfotomaculum reducens MI-1] gi|172044201|sp|A4J0F3|RECF_DESRM RecName: Full=DNA replication and repair protein recF gi|134050585|gb|ABO48556.1| DNA replication and repair protein RecF [Desulfotomaculum reducens MI-1] Length = 371 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 150/372 (40%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++K L++ FRNY + + I G N GKTN+LEAI + G FR DV Sbjct: 1 MRVKKLSLRNFRNYKEAQFIPHPSINIITGPNAQGKTNLLEAIYYSLRGCSFRAEKDRDV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 T S + L+ IKL+ + + L +N V R EL + Sbjct: 61 TNWESN-----HTVINTEVNLSSRLIKLQWKIQEGSKKLSLNGVE-RPRSEL-DLFGVVL 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDSS 181 P + G ERR FLD V + P + + + +++ RN LL E Sbjct: 114 FCPEDLSLIKGSPQERRHFLDYEVGTLSPGYSQLWRQYAKILSQRNSLLKEIRDHRSKQE 173 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+ G K+ R++++ L + + +L + Sbjct: 174 VLEVWDEQLYRYGAKVIYLRLQVLKKLIPIARKTHFGLTGGTEELQAKYLSSLVLEPGLS 233 Query: 242 A--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + + ++ R+M+ +TL+GPHR DL + + GS G+Q+ V + + Sbjct: 234 EGQIYQVFSSSSKKIRQMELKRCQTLLGPHRDDLSLAI-NGVEAKTFGSQGQQRTVTLSL 292 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358 L+ L + G P+LLLD++ LD ++N L + + Q F+T + + + Sbjct: 293 KLSQLDLWYHEFGEYPVLLLDDVLFELDRSRQNMLIDKILNK-VQTFITTSFTGGIEETI 351 Query: 359 NETAKFMRISNH 370 +++ Sbjct: 352 KGAGLLWQVNAG 363 >gi|197116405|ref|YP_002136832.1| DNA replication/repair protein RecF [Geobacter bemidjiensis Bem] gi|226737801|sp|B5E7P8|RECF_GEOBB RecName: Full=DNA replication and repair protein recF gi|197085765|gb|ACH37036.1| DNA replication and repair protein RecF [Geobacter bemidjiensis Bem] Length = 364 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 80/372 (21%), Positives = 164/372 (44%), Gaps = 12/372 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L ++ FRN ++ L + +F G+NG GKTN+LE+I L+ + F++A A++ Sbjct: 1 MKLIKLKLASFRNLQNIELAPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQARNAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +F FA V+G + ++ ++ + +++ ++ +D+ +L + Sbjct: 61 I-----AFAGEFALVKGTVERDQVRREIAVLIEKQGKKAKVDAKLMTRLDDFFGNLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRR+LDR VF D + D+ ++++ RN LL +++ Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLGYLTAYHDYAKILKNRNALLK--VNETTGIE 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 Q+ + + + R ++ + L+ + + + + + L G ++ Sbjct: 174 VWTEQLVQAALLVIERRKAYLDRIGKLLQGFYSEISGNDETVQIEYRLHGVDERLLAEDP 233 Query: 245 E-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + T IGPHR DL ++ S G+Q+ ++ + +A Sbjct: 234 AGALNQALRAHAAEERRRGTTAIGPHRDDLYFGLNGRS-ARQFASQGQQRSFVLALKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS--VFDSLNET 361 I+ P+LLLD++++ LD ++ L + Q+F+T T D L + Sbjct: 293 IEHITRCFEAPPVLLLDDMTSELDRERNRNLMEFLKKREMQVFITTTSLHNVDIDELQDN 352 Query: 362 AKFMRISNHQAL 373 + RI + L Sbjct: 353 -RTFRIKEGKIL 363 >gi|322417548|ref|YP_004196771.1| DNA replication and repair protein RecF [Geobacter sp. M18] gi|320123935|gb|ADW11495.1| DNA replication and repair protein RecF [Geobacter sp. M18] Length = 364 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 165/371 (44%), Gaps = 10/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L ++ FRN ++ LV + +F G+NG GKTN+LE+I L+ + F++A ++ Sbjct: 1 MKLIKLKLASFRNLQNIELVPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQAKNVEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GS FA ++G+ ++ ++ ++ + +I+ + +D+ +L + Sbjct: 61 IAFGSE-----FALIKGVVERDRVTREIALLLEKQGKKAKIDAKLATRLDDFFGNLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRR+LDR VF D + D+ ++++ RN LL G + S Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLSYLGAYHDYSKILKSRNALLKLG--EGSGIE 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL- 243 Q+ + + R + + L+ + + + + + L G ++++ Sbjct: 174 VWTEQLIQSAQLVIERRKAYLAEIGKLLQGFYSEISGNDETVQIEYRLHGVDEKAYAEDP 233 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + + T IGPHR DL ++ S G+Q+ ++ + +A Sbjct: 234 AAALSDALKAHAAEEKRRQTTAIGPHRDDLYFGLNGRS-ARHFASQGQQRSFVLALKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362 I+ P+LLLD++++ LD ++ L + Q+F+T T + E Sbjct: 293 IEYITGCFEAPPVLLLDDMTSELDRERNRNLMDFLKKREMQVFITTTSLQNVAIEDMEDN 352 Query: 363 KFMRISNHQAL 373 + RI + L Sbjct: 353 RTFRIKEGKIL 363 >gi|254360631|ref|ZP_04976780.1| DNA recombination protein RecF [Mannheimia haemolytica PHL213] gi|153091171|gb|EDN73176.1| DNA recombination protein RecF [Mannheimia haemolytica PHL213] Length = 361 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 78/372 (20%), Positives = 147/372 (39%), Gaps = 18/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN L F VG NG GKT++LE+I +L GR F+ + Sbjct: 1 MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F +++ + + I+ + + L+IN + +L L + Sbjct: 61 IHYDKDDF-VLHGKIDEAKHSWSVGIQKFRSGETT---LKINGEDGNKIADLAHLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F P + RL++ RN L + Sbjct: 117 ITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQRNSAL-QQVRSYQELK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ + ++ R E AL I + Q P I++ L+ + Sbjct: 176 AWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQ-FFLPEIEIGLSFHQGWEK-------G 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA+ L G + D T+IG ++D + S G+ K+++ + LA Sbjct: 228 ADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD--SLNETA 362 + + L+D+ ++ LD KR L + + GSQ+F+T + + + + Sbjct: 287 EHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQDQLNQMQWQDRS 346 Query: 363 K--FMRISNHQA 372 + N + Sbjct: 347 DDCLFTVKNGEI 358 >gi|119773157|ref|YP_925897.1| recombination protein F [Shewanella amazonensis SB2B] gi|166221861|sp|A1S1H1|RECF_SHEAM RecName: Full=DNA replication and repair protein recF gi|119765657|gb|ABL98227.1| DNA replication and repair protein RecF [Shewanella amazonensis SB2B] Length = 360 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 164/372 (44%), Gaps = 16/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I FRN S +L A + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLSRLSIDAFRNIDSAQLAPGAGLNLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + FA EG G + I ++ D V+ I+ ++ + +L + L I Sbjct: 61 IQNDAD-CLTLFAVAEGQAGDSRIGLRRHRSGDTEVK---IDGEKVKRLSQLAEALPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F + ++ R+++ RN+LL +G + Sbjct: 117 ITPESFSLLFEGPSARRQFIDWGAFHASKQFHLAWMNTRRILKQRNQLLRDGASYEH-IA 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +++ R + + +L+ ++ + E P + + ++ K Sbjct: 176 FWDKELIRYALEVTAIRNDYVGSLNGVLKGII-GEFLPDVDIRVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++++ L D T+ GPH++DL + + A S G+ K+++ + +A Sbjct: 228 TDFSELLQSQYARDLAIGHTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362 +L+ I L+D++ + LD R L + + D G+Q+F+T + S DSL Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAKHRQLLLKELIDTGAQLFVTAIEPSAIVDSLPVPPD 346 Query: 363 KFMRISNHQALC 374 + + + Sbjct: 347 RMFHVQAGRVTQ 358 >gi|291297542|ref|YP_003508820.1| DNA replication and repair protein RecF [Stackebrandtia nassauensis DSM 44728] gi|290566762|gb|ADD39727.1| DNA replication and repair protein RecF [Stackebrandtia nassauensis DSM 44728] Length = 378 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 90/383 (23%), Positives = 169/383 (44%), Gaps = 24/383 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR+Y + + ++FVG NG GKTN++E++ +L+ G R S A + Sbjct: 1 MHVRRLELTDFRSYGHVDVELPEGPSVFVGPNGHGKTNLIESLGYLATGSSHRVTSDAPL 60 Query: 65 TRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S + A V EG E LA+++I ++ R ++N + +L L+ Sbjct: 61 VRAGCESATARAAIVHEGRELLAELTIT----PGKANRA-RLNRSPLPRSRDLIGALKAV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174 P + G +RRR LD ++ A PR D++R+++ RN LL Sbjct: 116 VFAPEDLNLIRGEPEQRRRLLDELLIARHPRFAGVRADYDRVVKQRNALLRTAYLARKTG 175 Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 G D + +A +A+ G + R+ +I + +++ + + + L+ Sbjct: 176 GRGNTDLHTLDTWDAHLAQHGADLLAGRLALIEDYTPYVVKAYEAVSAGRGRPRLSYHSA 235 Query: 234 GKFDQSFCALKE----EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 ++ ++ + L R + TL+GPHR DL + D + S Sbjct: 236 LGENEPLSPDRDLLTARLSAALATARSREVERGTTLVGPHRDDLKLVLGDLPAK-GYASH 294 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + L A L+ + G AP+L+LD++ A LD +R L +V Q+ +T Sbjct: 295 GESWSYALALRLGAAELLRD-NGTAPVLILDDVYAELDSQRRERLAELVARAP-QVLVTC 352 Query: 350 TDKSVFDSLNETAKFMRISNHQA 372 + ++ I + + Sbjct: 353 AVAEDVPAQMSGGRY-DIHDGEV 374 >gi|183603361|ref|ZP_02711713.2| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC1087-00] gi|183569922|gb|EDT90450.1| DNA replication and repair protein RecF [Streptococcus pneumoniae CDC1087-00] Length = 327 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 74/331 (22%), Positives = 141/331 (42%), Gaps = 10/331 (3%) Query: 43 ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102 +LEAI FL+ R R + ++ + G+ SI LE + R Sbjct: 1 MLEAIYFLALTRSHRTRTDKNLIHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRV 55 Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 ++N + + + H+ + P ++ G RR+F+D + I P + + ++ Sbjct: 56 TKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNY 115 Query: 163 ERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 +++ RN L D ++ S ++ Q+ + G ++ R++ I L S + + + Sbjct: 116 NHILKQRNTYLKSVQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSN 175 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 +LS++ L E + L R D + T +GPHR D+ Sbjct: 176 QIEELSISYQSSVNI-TDKQNLSESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING-- 232 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + + GS G+ + +++ I LA L+ + T +PILLLD++ + LD ++ L ++ Sbjct: 233 MDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ- 291 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 Q F+T T +L E I N +A Sbjct: 292 SIQTFITTTSLDHLQNLPENLSIFTIQNGKA 322 >gi|269793362|ref|YP_003312817.1| DNA replication and repair protein RecF [Sanguibacter keddieii DSM 10542] gi|269095547|gb|ACZ19983.1| DNA replication and repair protein RecF [Sanguibacter keddieii DSM 10542] Length = 414 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 91/418 (21%), Positives = 164/418 (39%), Gaps = 57/418 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y + + + T VG NG GKTN++EA+ +++ R +S A + Sbjct: 1 MHVSHLSLLDFRSYTQVDVELEPGVTTLVGPNGQGKTNLVEALGYVATLGSHRVSSDAAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V G +++E R+ R Q+N ++ ++ R Sbjct: 61 IRAGASRAVVRTRIVRGDRASV---VEIEIAQGRANRA-QLNRSPVQRPRDVLGIARTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 P + G RRRFLD + + PR D+ER++R R+ LL Sbjct: 117 FAPEDLVLVKGDPDARRRFLDDLTVLLLPRMAGVFSDYERVLRQRSALLKSAGAARRSSN 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLD- 233 D +A++A++G +I R++++ AL + + + H +++ LD Sbjct: 177 PPDLRTLDVWDAKLAQVGAQIVAVRLQLVAALRPHVAVAYDQVSSGQGHAEIAYRSSLDA 236 Query: 234 -----------------------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270 G S L+ + L R + L+GPHR Sbjct: 237 VLSGVDDRSISGLAAEPVPAPDAGAGAPSSEHLEARLLEALAAVRPKELERGVCLVGPHR 296 Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN----------------TTGFA 314 DL + + S GE + + LA RL+++ Sbjct: 297 DDLTLTLGGLPAK-GYASHGESWSFALALRLASYRLLTDGPDPSTAEAAFWFADTGPDTE 355 Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 PIL+LD++ A LD +R L +V SQ+ +T + + A+ + +S Sbjct: 356 PILVLDDVFAELDSRRRGRLAELVAGA-SQVLITAAVGEDIPAQLDGAR-LAVSGGTV 411 >gi|302205160|gb|ADL09502.1| Recombination protein F [Corynebacterium pseudotuberculosis C231] gi|302329718|gb|ADL19912.1| Recombination protein F [Corynebacterium pseudotuberculosis 1002] gi|308275401|gb|ADO25300.1| Recombination protein F [Corynebacterium pseudotuberculosis I19] Length = 404 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 97/383 (25%), Positives = 161/383 (42%), Gaps = 34/383 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L++ +FR++A + + T+FVG NG GKTNI+EAI +++ R + + + Sbjct: 1 MYIRELSLRDFRSWADCHVNLEPGVTVFVGRNGFGKTNIVEAIGYIAHLGSHRVSQDSPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G S S A +G E A + IK + QIN ++ L +R Sbjct: 61 VHQGKDSARVSVTAVNQGRELTAHMLIK-----SKGTNQAQINRTRLKSPRGLLGVVRTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181 P + G ERRR+LD +V PR D++++++ RN LL Sbjct: 116 LFSPEDLSLVRGEPGERRRYLDHIVATRKPRLAGVKADYDKVLKQRNSLLKTASASLRRG 175 Query: 182 ---------WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTG 230 +AQ+A LG ++ AR ++ L+ L+ + +++ Sbjct: 176 YGADDGTLCTLDVWDAQLARLGSELIHARHSLVEELTPLVHSAYARIAPESRPARINYES 235 Query: 231 FLDGKFD-----------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 + L+ +L RK + TL+GPHR DL V D Sbjct: 236 TVPVPVAVTDAEEASSSIPDLDVLEASMLSQLGVQRKKEIDRGLTLVGPHRDDLAVLLGD 295 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + S GE + + + LA L+S G PIL+LD++ A LD +R L I Sbjct: 296 YPAK-GYASHGETWSMALALRLAEFHLLS-ADGSEPILILDDVFAELDSKRRQKLVGIAM 353 Query: 340 DIGSQIFMT-GTDKSVFDSLNET 361 + Q+ +T + D+L E+ Sbjct: 354 EAE-QVLITAAVGDDLPDNLAES 375 >gi|218291097|ref|ZP_03495120.1| DNA replication and repair protein RecF [Alicyclobacillus acidocaldarius LAA1] gi|218238982|gb|EED06189.1| DNA replication and repair protein RecF [Alicyclobacillus acidocaldarius LAA1] Length = 371 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 75/371 (20%), Positives = 148/371 (39%), Gaps = 12/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +FRNYA + + VG+NG GKTN LEA+ ++ G+ R D+ Sbjct: 1 MDIRRVELIDFRNYAQAEIELSPGVNVLVGENGQGKTNALEAMLLIAVGKSHRAHRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G ++++L R N V + + E +++ Sbjct: 61 IRWEQDRA-RVSLEASTRYGDRRLTLEL----GPEGRRAFANGVQVGRMTEFVGQVQVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--FDSSW 182 P + G RRRFLD + ++P + + + R + RNR L D Sbjct: 116 FAPEDLDLVKGGPRVRRRFLDTELGQMEPLYLHHLSLYNRALLQRNRWLKASPLSPDDDV 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQS 239 ++ + Q+A G + R+ + L + + +L + + Sbjct: 176 LATFDGQLAFHGAHVIHRRLRFLARLRAYAARIYSDIASGREEFALAYRSSVSGVAEGMT 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + + + L R D T +GPHR D+++ + + + S G+Q+ + + + Sbjct: 236 VEEMADTMQRALERNRAQDLRVGTTSVGPHRDDILLFLDGREVHTS-ASQGQQRTIALSL 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA + G P+LLLD++ + LD+ ++ L ++ Q +T T + Sbjct: 295 RLAEIDFMHEELGEYPVLLLDDVLSELDDLRQRNLVLGMSRK-VQTVITTTSLNRLGQEL 353 Query: 360 ETAKFMRISNH 370 + + R+ + Sbjct: 354 DDFRLFRVCSG 364 >gi|332139413|ref|YP_004425151.1| Recombinational DNA repair ATPase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549435|gb|AEA96153.1| Recombinational DNA repair ATPase [Alteromonas macleodii str. 'Deep ecotype'] Length = 362 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 166/371 (44%), Gaps = 15/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + I++FRN S+ L TI G+NG GK++++EA+ +L GR FR ++ V Sbjct: 1 MKLDRVQITQFRNLTSVSLSPSPALTIIKGENGSGKSSLIEALYYLGFGRSFRTNKHSSV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + SF S FA + EG ++ + + R IN + +L + + Sbjct: 61 IQNEKDSF-SVFASCKTEEGD-ELKLGFQ-RSRNETFTCSINGEHSNKLSDLVSLVPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P + G ERRRF D +F ++ + + + + ++ RN LL + + Sbjct: 118 FTPQSTDLIIGSPSERRRFCDWGLFHVEHQFQSLANQYGKFLKHRNALLKQQANLSAPQN 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E+Q +ELG ++ R E ++ L+ + +Y Q E P+ + L+ + + D Sbjct: 178 QYWESQFSELGESLSATRQEYVDTLTPIFKQYAQ-EFLPNFDVELSYYKGWEKDVGLS-- 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L R+ D T GPH++DL + S G+ ++ + + ++ Sbjct: 235 -----ESLVKKREYDGKIGHTSSGPHKADLRLKVNGVN-AQELLSRGQLRMAVAALQMSQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--T 361 +L ++ T I LLD++ A LD DKR + + +Q+F+T + S + + Sbjct: 289 TKLFNSATQRKSIFLLDDVGAELDADKREQFIDGLLKMDTQVFVTAIESSQLAFIQKYNE 348 Query: 362 AKFMRISNHQA 372 K + + Sbjct: 349 KKMFHVEHGSV 359 >gi|223983626|ref|ZP_03633804.1| hypothetical protein HOLDEFILI_01085 [Holdemania filiformis DSM 12042] gi|223964393|gb|EEF68727.1| hypothetical protein HOLDEFILI_01085 [Holdemania filiformis DSM 12042] Length = 368 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 162/369 (43%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + + FRNY S + + D + +G N GKTN+LE+I LS R R D+ Sbjct: 1 MKINQIRLKNFRNYDSCQFIPDPHMNVIIGKNAQGKTNLLESIVLLSTTRSHRAVRDQDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F R+ + + L + L I+ + E L Sbjct: 61 IREGQD-FCKAECRLN-----TEPEMVLSAVIHGKGKTLMIHQKPVSRSSEFIGKLNAVL 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 PS +F RRR +D + + PR+ + + +L++ RN LL + D++ Sbjct: 115 FAPSDLELFEAPPKVRRRLMDVEIGKVSPRYMQALSAMMKLLKERNSLLKREHLDNAMLE 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++ QM E + I R + I ++ + ++S A++ Sbjct: 175 VLDQQMIEQQLTIIAMRRQFIAKMNESLSRTYSALAEEEAQVSAAYH-TITEQTEPDAMR 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EE ++KL + R+ D + + T G HR DL + + +++ S G+++++++ L+ Sbjct: 234 EEISRKLLENRERDRILKTTSSGVHRDDLSFQLNGRDV-LSYASQGQRRMIVLAWKLSLI 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 I+ P+LLLD++ + LD+ KR LF +++ Q F+T T+ + L+ K Sbjct: 293 DFIAERLNELPVLLLDDVLSELDQQKRVNLFSLIS-PEIQTFITTTEIAELLPFLSRKPK 351 Query: 364 FMRISNHQA 372 I + Q Sbjct: 352 IAEIDSGQI 360 >gi|304382224|ref|ZP_07364731.1| recombination protein F [Prevotella marshii DSM 16973] gi|304336581|gb|EFM02810.1| recombination protein F [Prevotella marshii DSM 16973] Length = 371 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 152/375 (40%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++I F+N L + F+GDNG GKTN L+A+ +LS R + + Sbjct: 1 MILSKISIINFKNIREAVLELSPKMNCFIGDNGEGKTNFLDAVYYLSFCRSASNPIDSQI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FF R + EG ++S+ + + + N + + E + + Sbjct: 61 ICHEQD-FFMLEGRYQTDEGE-EVSVACSMKRGTK-KHFKRNRKEYKRLSEHIGFIPLIQ 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + PS + G S ERRR +D ++ D + + + + ++ RN LL + D + Sbjct: 118 VSPSDITLIEGSSEERRRLMDIVISQYDRTYLETLTRYNKALQQRNTLLKMDDEPDETLL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E +MA+ G I R + L + Q+ + ++SL + Sbjct: 178 DIWETEMADAGELIFRRRDAFVQELMPTFQNFYQRISGDQEQVSLHYISHCQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + R D +L G HR DL + + GS G+ K ++ + LA Sbjct: 230 RGRLLDVIRRDRAKDRAVGHSLHGIHRDDLEMMLGGYPMKRE-GSQGQNKTFIISLKLAQ 288 Query: 304 ARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + T G P+LLLD+I LD + + +V + QIF+T T++ D + Sbjct: 289 FDFLRRTGNGTTPLLLLDDIFDKLDARRVEQIVHLVAGNHFGQIFITDTNRDHLDRILHN 348 Query: 362 A----KFMRISNHQA 372 K +++ + Sbjct: 349 GDFDYKLFSVAHGEI 363 >gi|284028003|ref|YP_003377934.1| DNA replication and repair protein RecF [Kribbella flavida DSM 17836] gi|283807296|gb|ADB29135.1| DNA replication and repair protein RecF [Kribbella flavida DSM 17836] Length = 379 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 93/384 (24%), Positives = 156/384 (40%), Gaps = 24/384 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FR+Y + T FVG NG GKTN++EAI + + R A+ A + Sbjct: 1 MYVTALGLLDFRSYQQAEVELTPGVTAFVGPNGHGKTNLVEAIHYTATLGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+P V G D+ I+LE ++ R +IN + E+ LR Sbjct: 61 VRAGAPRAIVRT-EVRGQY-ERDVVIELEINPGKANRA-RINRSPVPRPREVLGLLRTVL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P + G ERRRFLD ++ PR D++R+++ RN LL Sbjct: 118 FAPEDLALVKGDPSERRRFLDELLTLRTPRMAGVRQDYDRVLKQRNSLLRSASMARRQNR 177 Query: 183 ----------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 +A +A G ++ R+E++ AL L+ L Sbjct: 178 GAAAEGQLRTLEIWDANLARTGAELLATRLELLEALRPLVAGGYDAVARGKGDARLEYKS 237 Query: 233 DGKFDQ---SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + + S L E + + R + +L+GPHR D+++ D + S Sbjct: 238 SVRLEPGVTSREQLAEVLLATVHEKRADELDRGVSLVGPHRDDVLLGLGDLPAK-GYASH 296 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT- 348 GE + + LA L+ G P+L+LD++ A LD +R+ L +V Q+ +T Sbjct: 297 GESWSFALALRLASYELL-RADGGEPVLILDDVFAELDTQRRDRLAELVAPAE-QVLVTA 354 Query: 349 GTDKSVFDSLNETAKFMRISNHQA 372 V + L + + + Sbjct: 355 AVGADVPEEL--SGVRFAVGDGSV 376 >gi|296118606|ref|ZP_06837184.1| RecF protein [Corynebacterium ammoniagenes DSM 20306] gi|295968505|gb|EFG81752.1| RecF protein [Corynebacterium ammoniagenes DSM 20306] Length = 418 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 172/372 (46%), Gaps = 30/372 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L++ +FR++ L+L D +FVG NG GKTNI+EA+ +++ R A + Sbjct: 1 MYIRELDLRDFRSWTELKLDLDPGIVLFVGRNGFGKTNIVEALGYVAHLSSHRVNQDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ S S A +G E A + IK + QIN + EL ++ Sbjct: 61 VRQGTASARVSATAVNQGRELTAHMLIK-----PHAANQAQINRTRCKSPRELLGVVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176 P + G ERRR+LD ++ PR D+++++R RN LL G Sbjct: 116 LFSPEDLALVRGEPAERRRYLDDIIATRTPRLAGVKADYDKVLRQRNALLKSASAAMRRG 175 Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLS 227 Y D+ + + Q+A LG ++ AR+E+I+ LS E + E+ P ++ Sbjct: 176 YGDTEGASALATLDVWDTQLATLGAQVINARLELIDELSDLIPAAYEGLAPESRP-AHIA 234 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 +D A+ +L R+ + +L+GPHR DL + + A Sbjct: 235 YKATIDTSDRDVLEAV---MLAELGTKRQREIERGISLVGPHRDDLEL-HLGTAPAKGFA 290 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + A +L+ + PIL+LD++ + LD +R L ++ D+ Q+F+ Sbjct: 291 SHGETWSYAIALRFAEFQLLRSEDSD-PILILDDVFSELDAKRREKLVKLAADVE-QVFI 348 Query: 348 T-GTDKSVFDSL 358 T D+ + ++L Sbjct: 349 TAAVDEDLPENL 360 >gi|38232645|ref|NP_938412.1| recombination protein F [Corynebacterium diphtheriae NCTC 13129] gi|51316242|sp|Q6NKL5|RECF_CORDI RecName: Full=DNA replication and repair protein recF gi|38198903|emb|CAE48514.1| DNA replication and repair protein [Corynebacterium diphtheriae] Length = 397 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 101/386 (26%), Positives = 166/386 (43%), Gaps = 29/386 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L++ +FR++ + + T+FVG NG GKTNI+EAI +++ R + + Sbjct: 1 MYIRELSLRDFRSWPECTVTLEPGVTLFVGRNGFGKTNIVEAIGYVAHLGSHRVFHDSAL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S S A G E A + IK + QIN ++ EL ++ Sbjct: 61 VRQGKESARVSVTAVNHGRELTAHLLIK-----AKGANQAQINRTRLKSPRELLGVVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176 P + G ERRR+LD ++ PR D+++++R RN LL G Sbjct: 116 LFSPEDLSLVRGDPAERRRYLDHVIATRKPRLGGVKADYDKVLRQRNSLLKTAGAALRRG 175 Query: 177 YFDS----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTG 230 Y S ++Q+A LG ++ AR ++ L L+ + + + Sbjct: 176 YGADDGALSTLDVWDSQLARLGGQLIHARHSVVRELGPLVHDAYARIAPESRPAHIRYVS 235 Query: 231 ---FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 F D S + +L R + +L+GPHR DL V D Sbjct: 236 TVPFADVVELPSPEEFEAAMLAELGQCRDKEIDRGVSLVGPHRDDLDVVLGDYPAK-GFA 294 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + + LA L+ N G P+L+LD++ A LD +R L VT Q+ + Sbjct: 295 SHGETWSMCLSLRLAEFHLLRN-DGTDPVLILDDVFAELDTQRREKLVS-VTAEAEQVLI 352 Query: 348 T-GTDKSVFDSLNETA---KFMRISN 369 T + D+L E+A F+ +++ Sbjct: 353 TAAVGDDLPDTLTESAVHRHFVSVAD 378 >gi|239993752|ref|ZP_04714276.1| Recombinational DNA repair ATPase [Alteromonas macleodii ATCC 27126] Length = 362 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 165/371 (44%), Gaps = 15/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + I++FRN S+ L TI G+NG GK++++EA+ +L GR FR ++ V Sbjct: 1 MKLDRVQITQFRNLTSVSLSPSPALTIIKGENGSGKSSLIEALYYLGFGRSFRTNKHSSV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + SF S FA + EG ++ + + R IN + +L + + Sbjct: 61 IQNEKDSF-SVFASCKTEEGD-ELKLGFQ-RSRNETFTCSINGEHSNKLSDLVSLVPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P + G ERRRF D +F ++ + + + + ++ RN LL + + Sbjct: 118 FTPQSTDLIIGSPSERRRFCDWGLFHVEHQFQSLANQYGKFLKHRNALLKQQANLSAPQN 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E+Q +ELG ++ R E ++ L+ + +Y Q E P+ + L+ + + D Sbjct: 178 QYWESQFSELGESLSATRQEYVDTLTPIFKQYAQ-EFLPNFDVELSYYKGWEKDVGLS-- 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L R+ D T GPH++DL + S G+ ++ + + ++ Sbjct: 235 -----ESLVKKREYDGKIGHTSSGPHKADLRLKVNGVN-AQELLSRGQLRMAVAALQMSQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--T 361 +L + T I LLD++ A LD DKR + + +Q+F+T + + + + Sbjct: 289 TKLFNKATQRKSIFLLDDVGAELDADKREQFIDGLLKMDTQVFVTAIESTQLAFIQKYNE 348 Query: 362 AKFMRISNHQA 372 K + + Sbjct: 349 KKMFHVEHGSV 359 >gi|119385560|ref|YP_916615.1| recombination protein F [Paracoccus denitrificans PD1222] gi|119376155|gb|ABL70919.1| DNA replication and repair protein RecF [Paracoccus denitrificans PD1222] Length = 358 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 198/363 (54%), Gaps = 17/363 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR++A L + D + G NG GKTNILEA+S LSPGRG R A+ D Sbjct: 1 MTLSLLHLTQFRSWARLEIEADHRPVAIHGPNGAGKTNILEAVSMLSPGRGMRGAAPGDQ 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + A + G + L R + I++ + L + +R+ W Sbjct: 61 ARKGPEVGWQIRAEI----GTHQV---LTRALPGQPREVVIDEKPSTQIA-LGRLMRVIW 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P+MDR+++ +RRRFLDR+ + P H + +E+ MR RNRLL + D+ W Sbjct: 113 LTPAMDRLWTDAPEQRRRFLDRVTLSFTPGHAEDALGYEKAMRERNRLLRDEVRDAGWYR 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++EAQMAE G + R++ I + + + FP L+L D Sbjct: 173 ALEAQMAETGAALTRNRLDAIARI--MAAQEGAGTAFPSASLTLLPGEGSADDPD----A 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E A +L +GR D + RTL GPHR+DL + +A+ A STGEQK +L+ + LA+A Sbjct: 227 ESIAARLAEGRGRDMAAGRTLTGPHRADLGAHWGPQAMPAALSSTGEQKALLLSLILANA 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R ++ +P+LLLDE++AHLD D+R AL+ + + +Q ++TGT +F++L A+F Sbjct: 287 RALAE---ESPVLLLDEVAAHLDADRRAALYDEICALRAQAWLTGTGPELFEALRGRAQF 343 Query: 365 MRI 367 + + Sbjct: 344 LAV 346 >gi|309791752|ref|ZP_07686242.1| DNA replication and repair protein RecF [Oscillochloris trichoides DG6] gi|308226245|gb|EFO79983.1| DNA replication and repair protein RecF [Oscillochloris trichoides DG6] Length = 390 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 96/389 (24%), Positives = 174/389 (44%), Gaps = 27/389 (6%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 ++ +FRNY + L T+F G N GKT++LEA+ +L+ R R S D+ R Sbjct: 2 SQFSLRDFRNYQRIDLQLAPGITLFYGSNASGKTSLLEALFYLATTRSPRSRSDHDLVRW 61 Query: 68 GSPS------FFSTFARVEGMEGLADISIKLETRDDR-------SVRCLQINDVVIRVVD 114 + F A VE G + + ++ R D + + ++++ R +D Sbjct: 62 DAQGEAGVLPFARVAAEVERRMGRVRLEVLVQRRADEDGQLTNGAQKLVRVDKRPARALD 121 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 L LR+ P + G ERRR++D + +DPR+ R + ++R+++ RN +L Sbjct: 122 -LVGQLRVVLFTPVDLALVDGPPAERRRYIDITLSQLDPRYVRTLAQYQRIVQQRNSMLR 180 Query: 175 EGYFDS-------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 + + ++++ G + R+ IN L+ ++ + LS Sbjct: 181 AWRERRRPLRGIDDELAYWDQELSQAGGFLLAERLRAINELNQIVGPLFGAISGEPHPLS 240 Query: 228 LTGFLDGKFDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 +T + D + A L + + +L R+ + +TLIGPHR D+ + Sbjct: 241 ITYRASIELDAALTAPDLSQRLSAELRRLRQDEVARGQTLIGPHRDDMSFSVAGIDLG-R 299 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 +GS G+Q+ V + + L A L+ +G P+LLLD++ + LD +R L + Q Sbjct: 300 YGSRGQQRSVTLALKLGEAELMRQRSGETPVLLLDDMLSELDTQRRTHLIAAIRRPAQQT 359 Query: 346 FMTGTDKSVFDS--LNETAKFMRISNHQA 372 +T TD F + L E ++ R+ Q Sbjct: 360 VLTATDLGDFGATFLAEISRM-RVEGGQV 387 >gi|85711019|ref|ZP_01042080.1| Recombinational DNA repair ATPase [Idiomarina baltica OS145] gi|85695423|gb|EAQ33360.1| Recombinational DNA repair ATPase [Idiomarina baltica OS145] Length = 362 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 84/367 (22%), Positives = 148/367 (40%), Gaps = 14/367 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L FRN+ + G NG GKT+++EAI L GR FR Y + Sbjct: 1 MRLNALKAINFRNFKRFDFEPSPYANLIGGLNGSGKTSLIEAIYLLGFGRSFRPGGYKQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + + + I + R L++N + + E+ + + + Sbjct: 61 INSSESDFTVFCEAMSDRDEVFKIGL---RRTSEGEVQLRLNGETVHKLSEIARFIPVQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RR+F+D VF ++ + + + ++ RN LL D S Sbjct: 118 FTPESVELILGGPSLRRQFMDWGVFHVEHTFYELWVAYTKSLKQRNFLLR-SKGDVRQDS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 AQ+A LG +I R+ I + + I + P +KL + L +DQS Sbjct: 177 FWRAQLARLGEEIIQLRIRYIQEIENFITK-SATFFLPDVKLEV--GLKQGWDQSLS--- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L + D T IGPH++D+ + + S G+ K+++ + LA A Sbjct: 231 --LADALDKHTERDRRYGHTSIGPHKADIKLTVDGIDAKLVL-SRGQLKLLVASLKLAQA 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363 + + I L+D+I++ LDE + + + Q F+T D S L + K Sbjct: 288 AHYNEKKDSSCIFLVDDITSELDEANQKKFITALEGLKCQSFITAIDSSPVARLFKQNPK 347 Query: 364 FMRISNH 370 + + Sbjct: 348 MFHVEHG 354 >gi|315925614|ref|ZP_07921824.1| recombination protein F [Pseudoramibacter alactolyticus ATCC 23263] gi|315621155|gb|EFV01126.1| recombination protein F [Pseudoramibacter alactolyticus ATCC 23263] Length = 372 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 153/375 (40%), Gaps = 13/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRNYAS + F + G N GKTN+LEA+ FL+ G R + AD+ Sbjct: 1 MIITDLQLKHFRNYASEQFDFSDHINVITGANAQGKTNLLEALFFLARGYSHRATTVADL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + P+FF+ V I ++ R + + L I+ K + Sbjct: 61 LQFEQPAFFARAGIV-----RDGIRHEISARYENRRKVLTIDGKKEPKHAAAGKIVHTIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181 P RI +RRRF++ + P + + + + + RN LL E S Sbjct: 116 FEPDDLRIVKAGPEKRRRFMNEEISGHMPGYLPVLGHYRKALAQRNALLKEIRHAASLKS 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SF 240 + +AQ+ G ++ R + L+++ + + L L+ + Sbjct: 176 LLAGWDAQLVHYGARLIRYRQAYLKRLNAVAQQLHTGLSDGREALRLSYRNNVIDQPADQ 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A+ + ++L + D T GP D+ V D + S G+Q+ + + Sbjct: 236 EAIARRFDERLKASVEEDIARGSTATGPQVDDMQVCI-DGREARKYASQGQQRTAAIALK 294 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ + + TG PI+LLD+I + LD ++ + I+ +Q F+T TD + + Sbjct: 295 LSQIEIYRHATGDWPIVLLDDILSELDAVRQEKILAILG--RTQAFITCTDSRFAERYPD 352 Query: 361 TAK-FMRISNHQALC 374 K + I + + Sbjct: 353 AMKRVLTIQDGHWIS 367 >gi|331693902|ref|YP_004330141.1| DNA replication and repair protein recF [Pseudonocardia dioxanivorans CB1190] gi|326948591|gb|AEA22288.1| DNA replication and repair protein recF [Pseudonocardia dioxanivorans CB1190] Length = 380 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 90/374 (24%), Positives = 163/374 (43%), Gaps = 14/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR++ L D T+ VG NG GKTN++EA+ +++ R A+ A + Sbjct: 1 MHLRRLAVTDFRSWEQADLDLDPGVTVLVGSNGEGKTNLVEAVGYIATLGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V +++++LE ++ R ++N + ++ LR Sbjct: 61 IRRGASRAVVRGVVVN---QRRELAVELEITAGKANRA-RVNRSPVPRTRDVLGILRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182 P + G ERRRFLD ++ A PR+ D+ER++R R+ LL D Sbjct: 117 FAPEDLALVRGDPGERRRFLDDLLVARYPRYAGVRADYERVLRQRSALLKTARAGGDLRT 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSF 240 + +A G ++ R++++ L+ + L L+G+ Sbjct: 177 LDVWDGHLARHGSELLAGRLDLVAGLAPPATAAFADVAPSSDPAALQYRSSLEGELPADA 236 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 AL+E + L R+ + L+GPHR DL + D + S GE + + + Sbjct: 237 AALEELLLEALGRVRRQEVDRGVCLVGPHRDDLEIRLGDGPAK-GYASHGESWALALALR 295 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLN 359 L RL+ P+L+LD++ A LD +R AL + Q+ +T + V L Sbjct: 296 LGSYRLL-QADDVEPVLILDDVFAELDTRRRRALAAVALQAE-QVLVTAAVAEDVPAELG 353 Query: 360 ETAKFMRISNHQAL 373 + +S A+ Sbjct: 354 --GARITVSGGTAV 365 >gi|323343966|ref|ZP_08084193.1| recombination protein F [Prevotella oralis ATCC 33269] gi|323095785|gb|EFZ38359.1| recombination protein F [Prevotella oralis ATCC 33269] Length = 372 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 147/375 (39%), Gaps = 18/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I +RN + L + +G NGVGKTN L+A+ +LS R + V Sbjct: 1 MILRKISILNYRNIRDVSLTLSPKINCLIGHNGVGKTNFLDAVYYLSFCRSAFNPIDSQV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + V + + R + + + N + + E + + + Sbjct: 61 IMHDEDFFMLQGSYVNDTDEEIEDIYCGMKRGTK--KHFKRNGKEYKRLSEHIGLIPLVF 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P+ + S ERRR +D ++ D + + ++ + ++ RN LL E D + Sbjct: 119 VSPADASLIDNGSEERRRLMDVVISQYDHSYIDALSNYNKALQQRNVLLRQEAEPDVALM 178 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E +MA G + R + + + ++ L + Sbjct: 179 EIWEEEMARNGELLYRKRDAFVKEFIPVFQRIYSSISGDKEQVELGYRSHCQ-------- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + R D +L G HR DL + D + GS G+ K ++ + LA Sbjct: 231 RGSLLEVIRHDRSKDRAVGYSLHGVHRDDLEM-LLDGYLMKREGSQGQTKTFVLALKLAQ 289 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + + P+LLLD+I LD + + +V+ D QIF+T T++ D + + Sbjct: 290 FDFLKRTASNTTPLLLLDDIFDKLDAARVEQIVHLVSGDSYGQIFITDTNRDHLDRILQN 349 Query: 362 ----AKFMRISNHQA 372 K ++N Sbjct: 350 NRHAYKLFSVTNGDI 364 >gi|113968349|ref|YP_732142.1| recombination protein F [Shewanella sp. MR-4] gi|123325558|sp|Q0HPD2|RECF_SHESM RecName: Full=DNA replication and repair protein recF gi|113883033|gb|ABI37085.1| DNA replication and repair protein RecF [Shewanella sp. MR-4] Length = 360 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 159/373 (42%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI FRN +L + + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLIRLNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FA + G + I ++ + V+ I+ ++ + L + L I Sbjct: 61 IN-NEQDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DP+ ++ R+++ RN+LL Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRN-NSSYDQIQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ R +++L+ L+ + E P + + ++ K Sbjct: 176 YWDREFVRYTEQVTEIRNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++A+ L D + T+ GPH++DL + A S G+ K+++ + +A Sbjct: 228 TDFAQLLESQYPRDLATGHTVSGPHKADLRLRVGSLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362 +L+ I L+D++ + LD R L + + D G+Q+F+T + + DSL+ + Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHTPPS 346 Query: 363 KFMRISNHQALCI 375 + + + I Sbjct: 347 RMFHVEQGRVTVI 359 >gi|114045516|ref|YP_736066.1| recombination protein F [Shewanella sp. MR-7] gi|123131882|sp|Q0I0U6|RECF_SHESR RecName: Full=DNA replication and repair protein recF gi|113886958|gb|ABI41009.1| DNA replication and repair protein RecF [Shewanella sp. MR-7] Length = 360 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 159/373 (42%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI FRN +L + + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLIRLNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FA + G + I ++ + V+ I+ ++ + L + L I Sbjct: 61 IN-NEQDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DP+ ++ R+++ RN+LL Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRN-NSSYEQIQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ R +++L+ L+ + E P + + ++ K Sbjct: 176 YWDREFVRYTEQVTEIRNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++A+ L D + T+ GPH++DL + A S G+ K+++ + +A Sbjct: 228 TDFAQLLESQYPRDLATGHTVSGPHKADLRLRVGSLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362 +L+ I L+D++ + LD R L + + D G+Q+F+T + + DSL+ + Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHTPPS 346 Query: 363 KFMRISNHQALCI 375 + + + I Sbjct: 347 RMFHVEQGRVTVI 359 >gi|282896236|ref|ZP_06304259.1| RecF protein [Raphidiopsis brookii D9] gi|281198925|gb|EFA73803.1| RecF protein [Raphidiopsis brookii D9] Length = 371 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 160/375 (42%), Gaps = 13/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY ++ F A TI VG+N GK+N+LE++ L+ R R +D Sbjct: 1 MYLQSLELRNFRNYQEQKVEFTAPKTILVGNNAQGKSNLLESVELLATLRSHRLGKDSDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G A ++ G++++++ L S R + IN +R + L Sbjct: 61 IQEGQDMA-RINAILDRTTGISNLTLNLRRN---SRRTVAINGETVRRQMDFLGILNAVE 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 + G RR +LD ++ ++P + + + +++R RN L Sbjct: 117 FSSLDLELVRGSPAIRRSWLDTLLVQLEPVYAHILHQYNQVLRQRNAFLKTIQQKGIKNH 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-Q 238 S + +AQ+ G K+ R I L + + + KL + + Sbjct: 177 DSELAIWDAQLVTTGTKVMRRRNRAIQRLGPIATHWHSSISGKMEKLEINYMPNVPILID 236 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L + + ++ + ++S TL+GPHR ++ + + S G+Q+ +++ Sbjct: 237 EQQELLQFFLDRVQEHSAIESYRGTTLVGPHRDEIELVVNGTP-ARQYASQGQQRTLVLA 295 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357 + LA +LI P+LLLD++ A LD ++N L + D Q +T T FD+ Sbjct: 296 LKLAELQLIEEVVNDTPLLLLDDVLAELDLSRQNQLLDAIQD-RFQTLITTTHLGAFDAQ 354 Query: 358 LNETAKFMRISNHQA 372 +++ + + Sbjct: 355 WLNSSQILFVKCGSI 369 >gi|119475238|ref|ZP_01615591.1| recombination protein F [marine gamma proteobacterium HTCC2143] gi|119451441|gb|EAW32674.1| recombination protein F [marine gamma proteobacterium HTCC2143] Length = 366 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 158/370 (42%), Gaps = 15/370 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L I+ RN S+ L + I GDNG GKT++LEAI LS + FR + Sbjct: 4 IRRLEIAGVRNLTSVSLPLLSTINILYGDNGAGKTSVLEAIHLLSSAKSFRGHKLKPLIN 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125 S F ++ + G + +E SV +++ +R L ++L + + Sbjct: 64 SDMDSC-VCFGEID-LPGQGFQPVGVERFKASSVPAVIKVAGQTVRSASALAENLPLQVI 121 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 ++ G RR+F+D VF ++ + + +R ++ RN LL G D S + Sbjct: 122 CSDTFKLLEGSPAVRRQFMDWGVFHVEHQFHSIWKNAQRCLKQRNSLLRHGRLDDSELAV 181 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 ++ G ++++ R + L + E + + LSL + D+S C + Sbjct: 182 WTQELVGFGEQLDVFRKSYFDRLVPIFEETLSRL-LDIDGLSLKYYRGWDSDRSLCDV-- 238 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 L D T GPHR+DL Y S G+QK+V+ + +A Sbjct: 239 -----LAANLNRDKEVTHTQAGPHRADLKFRYRSANAADIL-SRGQQKLVVCALRVAQGY 292 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD---SLNETA 362 L+S G + + L+D++ + LD R AL ++ ++G Q+F+T D S++ Sbjct: 293 LLSQEKGRSCVYLIDDLPSELDRGHRKALCMLLEELGCQVFVTCVDHRDLAECWSVDMPV 352 Query: 363 KFMRISNHQA 372 + + Sbjct: 353 SMFHVEHGNI 362 >gi|271961614|ref|YP_003335810.1| recombinational DNA repair ATPase (RecF pathway)-like protein [Streptosporangium roseum DSM 43021] gi|270504789|gb|ACZ83067.1| Recombinational DNA repair ATPase (RecF pathway)- like protein [Streptosporangium roseum DSM 43021] Length = 390 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 154/394 (39%), Gaps = 34/394 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y ++ L + T FVG NG GKTN++EA+ +++ R A+ + Sbjct: 1 MHVANLSLTDFRSYDTVDLGLEPGVTAFVGPNGQGKTNLVEALGYVATQSSHRVATDGPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V I+LE ++ R ++N + ++ LR Sbjct: 61 VRQGAARAIVRSVVVREDRRAL---IELEINPGKANRA-RLNRSPVSRPRDVIGLLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G ERRR+LD ++ A PR D++R+++ R LL Sbjct: 117 FAPEDLSMVKGDPSERRRYLDDLLVARTPRFAGVRADYDRVLKQRGALLRTAAQARRGGR 176 Query: 181 --------------------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE- 219 S +A +A G ++ AR+E++ AL L+ Sbjct: 177 SGRRADNDAAFAAAGAGDPLSTLEVWDAHLARHGAELLAARLELVEALRPLVAASYAALA 236 Query: 220 -NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 N L G L + L+E L + R + TL+GPHR DL + Sbjct: 237 PNSAPAALEYRGTLSTEEGSDRATLEERLRAGLLEVRTSEIERGVTLVGPHRDDLFLGLG 296 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 + + S GE + + LA L+ G P+L+LD++ A LD +R L IV Sbjct: 297 ELP-ARGYASHGESWSFALALRLAAYDLL-RADGGDPVLILDDVFAELDNQRRGRLAGIV 354 Query: 339 TDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 + V L ++ Sbjct: 355 APAEQVLITAAVAADVPAEL--VGARFDVTEGSV 386 >gi|163757040|ref|ZP_02164146.1| putative DNA replication and repair protein [Kordia algicida OT-1] gi|161323044|gb|EDP94387.1| putative DNA replication and repair protein [Kordia algicida OT-1] Length = 376 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 163/372 (43%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N+ + F+ + VG+NGVGKTN+L+AI LS G+ + + Sbjct: 18 MFLKKLSLINYKNFETNSFDFNQKINCLVGNNGVGKTNVLDAIYHLSFGKSYFNPVASQN 77 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G FF E + +I L+ + V+ N + E L + Sbjct: 78 IRHGED-FFVIDGLYEKADRDENIICSLKKGQKKMVKR---NGKPYDKLSEHIGFLPLVI 133 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S RR+F+D ++ + ++ +I++ +++ RN LL FD Sbjct: 134 ISPADRDLIIEGSDTRRKFMDSVISQSNKKYLHNLINYNKVLSQRNSLLKYFALNSTFDG 193 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S Q+ E G +I R ++A + M + ++++ Sbjct: 194 DTLSIYNDQLHEFGSQIYAERSAFLDAFLPIFMTRYNAISNEKEIVNISYK--------S 245 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++++ L + D + + T +G H+ DL+ I GS G+QK L+ + Sbjct: 246 QLHEKDFRSLLEESLAKDKVLQYTSVGTHKDDLLFTIETYPIK-KFGSQGQQKSFLIALK 304 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVF 355 LA I PILLLD+I LDED+ + +V + QIF++ T +S+ Sbjct: 305 LAQFDFIKQLANVTPILLLDDIFDKLDEDRVAQIMALVNNEDFGQIFISDTHVERTESIV 364 Query: 356 DSLNETAKFMRI 367 ++++ + ++ Sbjct: 365 KEIHQSYEIFKL 376 >gi|127510938|ref|YP_001092135.1| DNA replication and repair protein RecF [Shewanella loihica PV-4] gi|166221864|sp|A3Q8S8|RECF_SHELP RecName: Full=DNA replication and repair protein recF gi|126636233|gb|ABO21876.1| DNA replication and repair protein RecF [Shewanella loihica PV-4] Length = 360 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 155/373 (41%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I FRN AS +L + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLSRLHIDSFRNIASAQLQLGDGLNLIYGQNGSGKTSILEAIFFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + FA++E E I ++ + V+ N ++ + L + L I Sbjct: 61 IQNDQDK-LTLFAQLEQGEQETKIGLRRYRSGETEVKM---NGEKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F D + R+++ RN++L Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHTDKSFYTAWANVRRILKHRNQMLKSETP-YQQIQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ + R + +L+ + ++ E P + + ++ K Sbjct: 176 FWDKELVRYAEIVTEIRKRYVGSLNERLKGIIE-EFLPQVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y L D + T GPH++DL + + A S G+ K+++ + +A Sbjct: 228 TDYQTLLQAQYPRDLAAGHTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362 +L+ I L+D++ + LD R L + ++D G+Q+F+T + + DSLN Sbjct: 287 KLLKQQIDKNSIYLVDDLPSELDARHRQLLLQQLSDTGAQVFVTAIEPAAIMDSLNTPPV 346 Query: 363 KFMRISNHQALCI 375 K + + I Sbjct: 347 KVFHVEQGRVTVI 359 >gi|70733516|ref|YP_257155.1| recombination protein F [Pseudomonas fluorescens Pf-5] gi|97180867|sp|Q4KKS8|RECF_PSEF5 RecName: Full=DNA replication and repair protein recF gi|68347815|gb|AAY95421.1| DNA replication and repair protein RecF [Pseudomonas fluorescens Pf-5] Length = 367 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 89/373 (23%), Positives = 159/373 (42%), Gaps = 15/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + + + G NG GKT++LEAI L R FR A V Sbjct: 1 MSLSRVSVTAVRNLHPVTFSPSPRINLLYGANGSGKTSVLEAIHLLGLARSFRSARLLPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + F +VE +G S+ + RD + ++I+ R +L + L + Sbjct: 61 IQYEQLAC-TVFGQVELAQGGHS-SLGIS-RDRQGEFQIRIDGQNARSAAQLAEILPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P R+ G RR+FLD VF ++PR ++ +R RN L G D++ + Sbjct: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALRQRNSWLRHGTLDAASQA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ + +I+ R I AL + E E L+L+ + D+ Sbjct: 178 AWDRELCQASAEIDEYRRAYIKALKPVF-ERTLGELLQLEGLTLSYYRGWDKDR------ 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E ++ L D T GP R+DL + S G+QK+V+ + +A Sbjct: 231 -ELSEVLATALHRDQQMGHTQAGPQRADLRLRLGGHNAADIL-SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNET 361 L+S I L+D++ + LDE R AL R++ D+ Q+F+T D + Sbjct: 289 HLVSQARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELLREGWQTETP 348 Query: 362 AKFMRISNHQALC 374 + + Sbjct: 349 VALFHVEQGRITQ 361 >gi|160914816|ref|ZP_02077030.1| hypothetical protein EUBDOL_00823 [Eubacterium dolichum DSM 3991] gi|158433356|gb|EDP11645.1| hypothetical protein EUBDOL_00823 [Eubacterium dolichum DSM 3991] Length = 366 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 162/368 (44%), Gaps = 9/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + ++RNY L++ I G N GKTN+LEAI +LS R R A D+ Sbjct: 1 MRLTKLRLHDYRNYEDLQITLKNGIHILSGKNAQGKTNVLEAILYLSTTRSHRTACDEDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G +FF A +E ++ I + R + L + + V + Sbjct: 61 IKEGKEAFF-IKAEIEKTNRKEELQISVNERG----KNLFMYKNPVSKVSDFIGEFNAVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P +F+ RRRF+D + + + + ++L++ RNR L + + + + Sbjct: 116 FCPDDMMLFNASPRVRRRFVDMELSKLSKTYVNTLFVAQKLLKERNRYLKQEHVNKEYLD 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+ E + + R + L + ++ ++ + ++ + + + L+ Sbjct: 176 VVTMQLIEATMVVMKQRHHFLKQLLTKCAQFYKRLSNDGTQIEVIYESCVPYTEDEQLLR 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + +K R+ D R T +G H+ D I + + + S G+++ +L+ + + Sbjct: 236 DRLTEKYEKSRERDLAMRVTSVGIHKEDFIFQINGREV-ATYASQGQKRSILLALKVGMI 294 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN--ETA 362 +I + P+LLLD++ + LD D+R L + + QIF++ TD F L+ + Sbjct: 295 YMIEDIIHDYPVLLLDDVFSELDMDRRKELLHSLPN-EVQIFISTTDIEEFKHLDIHQPI 353 Query: 363 KFMRISNH 370 I++ Sbjct: 354 TIWSIASG 361 >gi|117918470|ref|YP_867662.1| recombination protein F [Shewanella sp. ANA-3] gi|166221866|sp|A0KR37|RECF_SHESA RecName: Full=DNA replication and repair protein recF gi|117610802|gb|ABK46256.1| DNA replication and repair protein RecF [Shewanella sp. ANA-3] Length = 360 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 159/373 (42%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI FRN +L + + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLIRLNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FA + G + I ++ + V+ I+ ++ + L + L I Sbjct: 61 IN-NEQDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DP+ ++ R+++ RN+LL Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRN-NSSYDQIQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ R +++L+ L+ + E P + + ++ K Sbjct: 176 YWDREFVRYTEQVTEIRNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++A+ L D + T+ GPH++DL + A S G+ K+++ + +A Sbjct: 228 TDFAQLLESQYPRDLATGHTVSGPHKADLRLRVGSLPAQDAM-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362 +L+ I L+D++ + LD R L + + D G+Q+F+T + + DSL+ + Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHMPPS 346 Query: 363 KFMRISNHQALCI 375 + + + I Sbjct: 347 RMFHVEQGRVTVI 359 >gi|326383912|ref|ZP_08205596.1| recombination protein F [Gordonia neofelifaecis NRRL B-59395] gi|326197371|gb|EGD54561.1| recombination protein F [Gordonia neofelifaecis NRRL B-59395] Length = 405 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 169/385 (43%), Gaps = 33/385 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++ R T+FVG NG GKTN+LE++ +++ R R +S A + Sbjct: 1 MFVRELTLRDFRSWPQARFTLSPGTTVFVGRNGFGKTNLLESLFYVATLRSHRVSSDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + + EG E +++I + IN +R E+ LR Sbjct: 61 VRTGADAARVTATVENEGRELTVELTI-----PAQGANKATINTRPVRRTREVLGILRAV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174 P + G ERRRF+D +V + P +D++R++R R+ LL Sbjct: 116 LFAPEDLALVRGDPGERRRFIDELVAQLRPLAAGAKVDYDRVLRQRSALLKTASAAMRRG 175 Query: 175 --EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH---IKLSLT 229 + S +AQ+AELG ++ +R+ ++ L+ + + PH +S Sbjct: 176 GEQAESVLSTLDVWDAQLAELGAQVTASRLAVVRQLAPFVTDAYSSI-APHSRPAHISYR 234 Query: 230 GFLDGKFDQS------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 D S A+++ A++L + R + L+GPHR DL + D+ Sbjct: 235 SAAGESVDASPGGDAEIDAIRDVLAQRLVELRSKEIDRGLCLVGPHRDDLFLGLGDEPAK 294 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 S GE + + L L+ G PI++LD++ A LD +R L T Sbjct: 295 -GFASHGESWSFALSLRLGSVELL-RADGVEPIIMLDDVFAELDVTRRRLLAEF-TASAD 351 Query: 344 QIFMTGTDKSVFDSLNETAKFMRIS 368 Q+ +T +V D + E+ RIS Sbjct: 352 QLLITA---AVPDDIPESIVGRRIS 373 >gi|150006868|ref|YP_001301611.1| putative DNA replication and repair protein [Parabacteroides distasonis ATCC 8503] gi|262384383|ref|ZP_06077518.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_33B] gi|298377294|ref|ZP_06987247.1| RecF protein [Bacteroides sp. 3_1_19] gi|301308691|ref|ZP_07214643.1| RecF protein [Bacteroides sp. 20_3] gi|166220722|sp|A6L8H5|RECF_PARD8 RecName: Full=DNA replication and repair protein recF gi|149935292|gb|ABR41989.1| putative DNA replication and repair protein [Parabacteroides distasonis ATCC 8503] gi|262294086|gb|EEY82019.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_33B] gi|298265708|gb|EFI07368.1| RecF protein [Bacteroides sp. 3_1_19] gi|300833215|gb|EFK63833.1| RecF protein [Bacteroides sp. 20_3] Length = 365 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 157/375 (41%), Gaps = 22/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N ++F + F G+NG+GKTN+L+AI +LS + + + Sbjct: 1 MILKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKSHVNTPDSQI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +I + R + + N + E L + Sbjct: 61 INSDQD-LCVVQGNYDYEGREEEIFCAMRRRQRK---QFKRNKKEYDKLSEHIGLLPLVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P+ + G S ERRRFLD ++ D + +I + + + RN LL + D+S Sbjct: 117 VSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSMDASLYE 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCA 242 +E Q+ G + R +++ + + EY Q + + L L+ Sbjct: 177 VLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQTICGSAEEVGLHYISQLE--------- 227 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + E A KL R+ D + T G H+ +L + I GS G+ K L+ + LA Sbjct: 228 -ETELAGKLAMSRERDRILGYTSSGIHKDELEMTLGGYLIRRV-GSQGQNKTYLIALKLA 285 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL--- 358 ++ PILLLD+I LD + + ++V++ G QIF+T T++ D + Sbjct: 286 QFAFLNKRGQTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLDEILLA 345 Query: 359 -NETAKFMRISNHQA 372 N R+ + Sbjct: 346 MNHDYALFRVERGEV 360 >gi|56459115|ref|YP_154396.1| recombinational DNA repair ATPase [Idiomarina loihiensis L2TR] gi|81678377|sp|Q5QY37|RECF_IDILO RecName: Full=DNA replication and repair protein recF gi|56178125|gb|AAV80847.1| Recombinational DNA repair ATPase [Idiomarina loihiensis L2TR] Length = 354 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 86/367 (23%), Positives = 162/367 (44%), Gaps = 18/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ LN+S FRN++ + L + I GDNG GKT++LEAI L GR FR + + Sbjct: 1 MFIETLNLSHFRNFSEVALSPSPKINIITGDNGSGKTSLLEAIYLLGFGRSFRPGGFRQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G S F+ F R D +I + D + L++N ++ + ++ + + + Sbjct: 61 IKEG-NSGFTVFCR------SQDYAIGVRRSTD-GEQSLRLNGANVQRMSDVARLVPVQL 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P I +RR+F+D VF ++ + + +L++ RN LL + Sbjct: 113 LTPESVDILLEGPGQRRQFIDWGVFHVEHSFYSDWVAYTQLLKQRNSLLKQRSLPVREDR 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A G +I+ +R + + L+ I E + K + + + QS Sbjct: 173 YWKEQLAYYGERISKSREKYLEELNDYIQE-LAKSFLSDVTMEVRLKSGWDTSQS----- 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L + D T +G H++D+ V D S G+ K + + LA Sbjct: 227 --LFDALESHTEKDKKYGFTSVGAHKADIKV-IADGVEVKHRLSRGQLKTAITALKLAQG 283 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + I L+D++++ LD + L R + ++ +Q+F+T T K + D ++ + Sbjct: 284 KHYQKIKRQPCIYLVDDLTSELDSKNQALLCRELENLDAQVFITAITGKQLSDKFQKSPR 343 Query: 364 FMRISNH 370 + + Sbjct: 344 MFHVEHG 350 >gi|293369424|ref|ZP_06616009.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CMC 3f] gi|292635591|gb|EFF54098.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CMC 3f] Length = 375 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 4 MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 63 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G +I ++ R + + N + L + Sbjct: 64 IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 120 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFPVEEEL 179 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + + + L+ + Sbjct: 180 FLVWEEMMAQAGAIVFQKREAFIREFIPIFQSFYSFISQDKEVVGLSYESHARD------ 233 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L R+ D + +L G H+ +L + + I GS G+ K LV + LA Sbjct: 234 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 291 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRGHLDRILHK 350 Query: 359 -NETAKFMRISNHQA 372 K R+ Sbjct: 351 VGSDYKIFRVEEGTI 365 >gi|15603024|ref|NP_246096.1| recombination protein F [Pasteurella multocida subsp. multocida str. Pm70] gi|13959473|sp|Q9CLQ6|RECF_PASMU RecName: Full=DNA replication and repair protein recF gi|12721507|gb|AAK03243.1| RecF [Pasteurella multocida subsp. multocida str. Pm70] Length = 358 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 155/367 (42%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I FRN ++ L FD VG+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLIENFRNLTAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F A+++ + ++ + + ++IN + +L L + Sbjct: 61 ISYEQPHFI-LHAKIQEQAHQWSVGLQ---KLRQGNSVVKINGEDGNKIADLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G + RR FLD +F ++ RL++ RN L + + Sbjct: 117 ITPEGLTLLNGGPVYRRAFLDWGLFHHHNHFHLAWVNLNRLLKQRNAALQQATHYQA-LE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ +L +++ R + AL I E + P +++S++ + D Sbjct: 176 IWDRELVKLAHQVSEWRAQYAEALRPEI-EQTCRLFLPELEISVSFHQGWEKDS------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L + D T+ GP ++D + S G+ K+++ + LA Sbjct: 229 -DYADLLVRHFERDRAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 + I L+D+ ++ LD+ KR L + GSQ+F++ T+ + + + Sbjct: 287 EHLMKQKERHCIFLIDDFASELDQYKRALLAERLKQSGSQVFVSAITETQLKQMQPQQHR 346 Query: 364 FMRISNH 370 R+ Sbjct: 347 TFRVEEG 353 >gi|313887660|ref|ZP_07821342.1| DNA replication and repair protein RecF [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846269|gb|EFR33648.1| DNA replication and repair protein RecF [Peptoniphilus harei ACS-146-V-Sch2b] Length = 357 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 166/369 (44%), Gaps = 12/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + FRNY L V + G N GKTN+LE+I FR D+ Sbjct: 1 MKLKHLRLFNFRNYKGLDFVPGENINVLYGLNASGKTNLLESIYMSIRATSFRSLKDFDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 I S S R + D I++ +++ L IND + E K + Sbjct: 61 INIDENS-SSIITRYMTEDYKDDYRIEISKFENKK---LFINDDKVNT-KEYRKSRFVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I ERR+FLD ++ ID + M + RL+ RN+LL D + Sbjct: 116 FNPEDLNIIKYSPKERRKFLDDLLSNIDLNYDFYMYKYRRLLFERNKLLK-INMDRNLLD 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ G KI I R++ I L+ + ++ + + + ++ + D+ L Sbjct: 175 VYDREIVRNGTKIIIMRLKTIKKLNEIAKKHYKNLSGDDLNITYLSTVPVFVDEE--ELM 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E Y + L + D R T IGPHR DL +K + ++GS GEQ+ +++ + LA A Sbjct: 233 ENYLRILKESLPKDLEKRYTTIGPHRDDLDFKI-NKFSSKSYGSQGEQRSIVLSLKLAEA 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 LI + P+LLLD++ + +D + L + D+ Q F+T T+ F + A F Sbjct: 292 DLIRDLYKTKPLLLLDDVFSEIDSKRSRYLLHSLKDL--QTFITTTEADEFLK-SVDANF 348 Query: 365 MRISNHQAL 373 R+S + L Sbjct: 349 YRVSQGRIL 357 >gi|300777028|ref|ZP_07086886.1| recombination protein F [Chryseobacterium gleum ATCC 35910] gi|300502538|gb|EFK33678.1| recombination protein F [Chryseobacterium gleum ATCC 35910] Length = 359 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 167/372 (44%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L++ F+N+ + F Q FVG+NGVGKTNIL+A+ +LS G+ F + + Sbjct: 1 MIIKKLSLYNFKNHTEKKFEFSPQINCFVGNNGVGKTNILDALHYLSVGKSFLGNTDLNN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FF+ A ++ + I I T+ + + ++ ND + + +L Sbjct: 61 IKK-EEDFFTIDAEIQNEDSEDIIRI---TQPKEAKKVIKKNDKSYDRLADHIGYLPSVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180 + P + S RR+FLD M+ D + +I +++ ++ RN LL +D Sbjct: 117 ISPYDSNLISDSGESRRKFLDSMISQTDSGYLFDLIQYQKTIQQRNALLKYFAKNRTWDK 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + G KI R E + L+ ++ + + + +S+ Sbjct: 177 DSLEIYDDPIIRFGTKIFNKRKEFVEQLNPIVQNFYKIISGGKETVSVIY--------ES 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L++ + L + + D M T G H+ DL+ + D + GS G+QK L+ + Sbjct: 229 HLLEDSFENLLKESLEKDRMLTYTSKGIHKDDLLFEM-DHVLIKKIGSQGQQKSFLISLK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS----VF 355 LA L+ T PILLLD+I LD+ + + L +V + QIF+T T + V Sbjct: 288 LAQMSLVKELTKKTPILLLDDIFDKLDDIRVSQLIELVNRESFGQIFITDTHRERTESVV 347 Query: 356 DSLNETAKFMRI 367 +NE + + Sbjct: 348 KKINEESIIFEV 359 >gi|218261320|ref|ZP_03476188.1| hypothetical protein PRABACTJOHN_01854 [Parabacteroides johnsonii DSM 18315] gi|218224101|gb|EEC96751.1| hypothetical protein PRABACTJOHN_01854 [Parabacteroides johnsonii DSM 18315] Length = 367 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 157/376 (41%), Gaps = 24/376 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L+I ++N + F F G+NG+GKTN+L+A+ +LS + + + Sbjct: 1 MILKKLSILNYKNILQAEVSFSPDINCFFGNNGMGKTNLLDAVHYLSFCKSHINTPDSQL 60 Query: 65 TRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G EG E +I+ R + N + E L + Sbjct: 61 INNGQDMCVLQGNYDYEGREEEIFCAIRRRQRK-----QFKRNKKEYDKLSEHIGLLPLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P+ + G S ERRRFLD ++ D + +I + + + RN LL + D+S Sbjct: 116 MVSPADSELIQGGSEERRRFLDVIISQQDKPYLHALIQYNKALLQRNSLLKDQCTDASLY 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFC 241 +E Q+ G + R ++N + EY Q + + L L+ Sbjct: 176 EVLEMQLDMYGRMVYEKRQMLVNDFIPIFNEYYQTICRSTEQVGLRYISQLE-------- 227 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 K + L R+ D + T G H+ +L + D I GS G+ K L+ + L Sbjct: 228 --KGNLSDMLAANRERDRILGYTSTGIHKDELEMTLNDYLIRRV-GSQGQNKTYLIALKL 284 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360 A +S PILLLD+I LD D+ + ++V+ D QIF+T T++ D++ + Sbjct: 285 AQYVFLSRRGQACPILLLDDIFDKLDADRVEQIVKLVSGDQFGQIFITDTNRKYLDAILQ 344 Query: 361 T----AKFMRISNHQA 372 + R+ + Sbjct: 345 SINHGYALFRVEQGEV 360 >gi|297570616|ref|YP_003696390.1| DNA replication and repair protein RecF [Arcanobacterium haemolyticum DSM 20595] gi|296930963|gb|ADH91771.1| DNA replication and repair protein RecF [Arcanobacterium haemolyticum DSM 20595] Length = 410 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 104/413 (25%), Positives = 173/413 (41%), Gaps = 54/413 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L +++FR+Y + + F T FVG+NG GKTN++EAI +L+ R + A + Sbjct: 1 MYISDLALNDFRSYRDVVVSFSPGITTFVGENGQGKTNLVEAIGYLATFSSHRVNADAAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + R + M G + ++LE R+ R +IN + D L +R Sbjct: 61 VRQGANAAV---VRAKVMHGDSPTMVELEILSGRANRA-RINRGNAQPSDVL-GIVRTVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P + G RRRFLD ++ + PR + D+E++ R R LL G Sbjct: 116 FAPEDLELIKGDPGVRRRFLDDVMVQLRPRMAQVKADYEKVARQRAALLKTIWKARRRGG 175 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH------------- 223 D + ++Q+A LG +I R +++AL + Y ++ + Sbjct: 176 PVDETMLDIFDSQLAALGARIIGQRARIVSALRPYVEAYYREVSGGKGVARIDYAANIDA 235 Query: 224 -----------IKLSLTGFLDGKFDQSFCALKEE------YAKKLFDGRKMDSMSRRTLI 266 I +G L + Q L++E L + R+ + L+ Sbjct: 236 RSGWDFPAITDISADSSGALAAEIAQHERELQDESATAARLQATLREWREQEIERGVNLV 295 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN------TTGFAPILLLD 320 GPHR D V + + S GE + + LA R++ + T PIL+LD Sbjct: 296 GPHRDDF-VTFLGTLPAKGYASHGESWSYALSLRLASWRVLRDDDSGNWTDDGEPILILD 354 Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372 ++ A LD +R L IV + GSQ+F+T + D L+ + Sbjct: 355 DVFAELDARRRQRLAAIVRE-GSQVFVTAAVGDDLPDELD--GATFYVHGGTV 404 >gi|146297979|ref|YP_001192570.1| DNA replication and repair protein RecF [Flavobacterium johnsoniae UW101] gi|189039624|sp|A5FNH5|RECF_FLAJO RecName: Full=DNA replication and repair protein recF gi|146152397|gb|ABQ03251.1| DNA replication and repair protein RecF [Flavobacterium johnsoniae UW101] Length = 359 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 154/372 (41%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ ++N++ FD + FVG NG+GKTN+L+AI L+ G+ + Sbjct: 1 MHLNKLSLFNYKNFSEAGFDFDIKINCFVGKNGIGKTNVLDAIYHLAYGKSYFNPLAVQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G FF A +E + I L+ + L+ N + + + Sbjct: 61 IKHGEE-FFVIDAELEKNDRTEQIVCSLK---KGQKKVLKRNGKAYDKFSDHIGFIPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S RR+F+D ++ +D + ++I +++++ RN LL FD+ Sbjct: 117 ISPADRDLIVEGSETRRKFMDSVISQLDSTYLHQLIQYQKVIVQRNALLKYFALNHTFDN 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S Q+ E G I R E + + + Q + L Sbjct: 177 DTLSIYNEQLNEFGKSIFEKRKEFLEEFIPIFNVHHQAITGSEESVQLVY--------ES 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +++ L + D T G H+ DL + I GS G+QK L+ + Sbjct: 229 HLFEKDLLTLLQENINKDRALHYTSSGIHKDDLSFEIDSHPIK-KFGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL- 358 LA + +G PILL D+I LDE + + +V ++ Q+F++ T +++ Sbjct: 288 LAQFEFLKKQSGVKPILLFDDIFDKLDETRVAKIVEMVNSETFGQLFISDTHPERTEAIV 347 Query: 359 ---NETAKFMRI 367 ++T K + Sbjct: 348 KSTHQTYKIFNL 359 >gi|160887072|ref|ZP_02068075.1| hypothetical protein BACOVA_05088 [Bacteroides ovatus ATCC 8483] gi|260171615|ref|ZP_05758027.1| DNA repair protein RecF [Bacteroides sp. D2] gi|315919929|ref|ZP_07916169.1| DNA replication and repair protein recF [Bacteroides sp. D2] gi|156107483|gb|EDO09228.1| hypothetical protein BACOVA_05088 [Bacteroides ovatus ATCC 8483] gi|313693804|gb|EFS30639.1| DNA replication and repair protein recF [Bacteroides sp. D2] Length = 372 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 151/375 (40%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G +I ++ R + + N + L + Sbjct: 61 IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + +++ RN LL + Sbjct: 117 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKVLAQRNTLLKSEFPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + + + L+ + Sbjct: 177 FLVWEEMMAQAGAIVFQKREAFIREFIPIFQSFYSFISQDKEVVGLSYESHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L R+ D + +L G H+ +L + + I GS G+ K LV + LA Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRGHLDRILHK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ Sbjct: 348 VGSDYKIFRVEEGTI 362 >gi|312958105|ref|ZP_07772628.1| DNA replication and repair protein recF [Pseudomonas fluorescens WH6] gi|311287536|gb|EFQ66094.1| DNA replication and repair protein recF [Pseudomonas fluorescens WH6] Length = 367 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 160/372 (43%), Gaps = 17/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + + I G NG GKT++LEAI L R FR A V Sbjct: 1 MSLSRVSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F +VE EG +++ I +RD ++I+ R +L + L + Sbjct: 61 IQYEQLAA-TVFGQVELAEGGHSNLGI---SRDRGGEFQIRIDGQNARSAAQLAEILPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D++ Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + + E L+L+ + D+ A+ Sbjct: 177 AAWDRELCLASDEIDEYRRAYIKALKPVFEQTLS-ELLDLEGLTLSYYRGWDKDRELSAV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L + D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+S I L+D++ + LDE R AL R++ D+ Q+F+T D + Sbjct: 288 GHLVSQARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELLREGWQTET 347 Query: 361 TAKFMRISNHQA 372 + + Sbjct: 348 PVALFHVEQGRI 359 >gi|83591343|ref|YP_425095.1| recombination protein F [Rhodospirillum rubrum ATCC 11170] gi|83574257|gb|ABC20808.1| RecF protein [Rhodospirillum rubrum ATCC 11170] Length = 375 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 131/380 (34%), Positives = 188/380 (49%), Gaps = 20/380 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VT 65 ++ L ++ FR Y LRL + + G NG GKTN+LEA+SFL+PGRG RRA+ AD Sbjct: 2 VERLTLTAFRCYDRLRLDVGPRPLVLTGPNGAGKTNLLEALSFLAPGRGLRRAALADPCR 61 Query: 66 RIGSPSF-----FSTFARVEGMEGL------ADISIKLETRDDRSVRCLQINDVVIRVVD 114 R+G + ++ A + G D+ LE R ++I+ Sbjct: 62 RVGGDAATAGPPWAVAAHLRLPAGPGTLGRGVDVGTGLERATAGERRLVRIDGATAGQAA 121 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 L + WL P MD +F G + ERRRFLDR+V +DP H R + + R R RLL Sbjct: 122 -LGDLFSVLWLTPEMDGLFRGGASERRRFLDRLVNGLDPDHAGRTAAYAQAQRERARLLR 180 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 EG W +E MA GV I AR ++++ L + + FP ++ L +DG Sbjct: 181 EGRASRGWLDGLEDVMARHGVAIVAARRDLVDRLGAAVRA--ATGPFPGARIDLVSEVDG 238 Query: 235 KFDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 A ++ L R ++ + GPHR DL V + K I STGEQK Sbjct: 239 WLAAGPALAAEDRLRAALAMARGPEAPA----PGPHRDDLAVRHGPKDIPAVQASTGEQK 294 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 VL+ + LA AR+ AP+LLLDE AHLD +R AL ++ G Q +++GT+ Sbjct: 295 AVLIALILAQARVQEAARAVAPLLLLDEGVAHLDAPRRAALGEALSGQGLQAWVSGTEAQ 354 Query: 354 VFDSLNETAKFMRISNHQAL 373 FDS + A+F+RI+ L Sbjct: 355 AFDSWAKNAQFLRIAEGAVL 374 >gi|304439075|ref|ZP_07398994.1| recombination protein F [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372434|gb|EFM26021.1| recombination protein F [Peptoniphilus duerdenii ATCC BAA-1640] Length = 361 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 98/368 (26%), Positives = 177/368 (48%), Gaps = 13/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + FRNY L+L+ +FVG N GKTN++E+I+ G FR + A++ Sbjct: 1 MKLKSLQLINFRNYEDLKLIPSETLNLFVGKNAQGKTNLIESIAVSISGSSFRTSKNAEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +G+ S + + +E L SI +++ + IN I + + K Sbjct: 61 IELGNKS-SNIISEIEKKGRLEKRSIYIDSSGIK----HSING-KITTLKDFTKSSAAVI 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I +RRR+LD ++ +D +R + +++++ +N+ L D + Sbjct: 115 FKPDDLYIIKNSPSDRRRYLDDIISNLDSIYRYNLNSYKKVLYEKNKALKVNNND-TLLD 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+++ +I I R+ +I L S EY + + K++ ++ ++ L Sbjct: 174 IYDRQLSKFASEILIKRLNIIKILESYAKEYYKTLSGCDFKITYLSTIN--LKKTREELV 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EE+ L R +D T IGPHR D+ DK++ GS GE + ++ + LA Sbjct: 232 EEFLNALRSRRHIDKRKLYTSIGPHRDDIDFKINDKSVK-NFGSQGEIRSSILVLKLAEL 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETAK 363 + I N P+LLLD++ + LD +R+AL + G Q F+T T+ + DS +++ +K Sbjct: 291 KYILNVLNITPVLLLDDVLSELDSTRRDALLTSIE--GIQTFITSTNSEIIDSYIDDNSK 348 Query: 364 FMRISNHQ 371 I N + Sbjct: 349 VFMIENGK 356 >gi|255016100|ref|ZP_05288226.1| putative DNA replication and repair protein [Bacteroides sp. 2_1_7] Length = 365 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 157/375 (41%), Gaps = 22/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N ++F + F G+NG+GKTN+L+AI +LS + + + Sbjct: 1 MILKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKSHVNTPDSQI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +I + R + + N + E L + Sbjct: 61 INSDQD-LCVVQGNYDYEGREEEIFCAMRRRQRK---QFKRNKKEYDKLSEHIGLLPLVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P+ + G S ERRRFLD ++ D + +I + + + RN LL + D+S Sbjct: 117 VSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSMDASLYE 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCA 242 +E Q+ G + R +++ + + EY Q + + L L+ Sbjct: 177 VLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQTICGSAEEVGLHYISQLE--------- 227 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + E A KL R+ D + T G H+ +L + I GS G+ K L+ + LA Sbjct: 228 -ETELAGKLAMSRERDRILGYTSSGIHKDELEMTLGGYLIRRV-GSQGQNKTYLIALKLA 285 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL--- 358 ++ PILLLD+I LD + + ++V++ G QIF+T T++ D + Sbjct: 286 QFAFLNKRGRTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLDEILLA 345 Query: 359 -NETAKFMRISNHQA 372 N R+ + Sbjct: 346 MNHDYALFRVERGEV 360 >gi|257464818|ref|ZP_05629189.1| recombination protein F [Actinobacillus minor 202] gi|257450478|gb|EEV24521.1| recombination protein F [Actinobacillus minor 202] Length = 361 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 74/370 (20%), Positives = 156/370 (42%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FRN ++ L Q +G NG GKT++LE+I +L GR F+ + Sbjct: 1 MPLSRLIVQNFRNLQAVDLTLSPQFNFIIGANGSGKTSLLESIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F ++E + + I+ + + + L+IN + +L + L + Sbjct: 61 IHHDAD-HFVLHGKIEEAQHSWSVGIQKQRSGETT---LKINGEDGNKIADLAQLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR FLD +F ++ +RL++ RN L + Sbjct: 117 ITPEGLTLLNDGPSYRRAFLDWGLFHQHAEFYSDWVNLKRLLKQRNAALHQVRSYFE-LK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++A+L K++ R + A+ I + + P + + ++ + + Sbjct: 176 AWDIELAKLAEKVSQMRAAYVEAILPEIDKTC-RFFLPELDIQISFYQGWEK-------G 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L G + D T++GP ++DL + + S G+ K+++ + LA Sbjct: 228 ADYADILAQGFERDQNLGYTMMGPQKADLRIKANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL----NE 360 + + L+D+ ++ LD KR L + + + SQ+F+T K + + ++ Sbjct: 287 EFLMTQKARQCLFLVDDFASELDPTKRELLSQRLRESHSQVFVTAITKEQLNQMQWQEHQ 346 Query: 361 TAKFMRISNH 370 T + Sbjct: 347 TDSSFEVKEG 356 >gi|309388285|gb|ADO76165.1| DNA replication and repair protein RecF [Halanaerobium praevalens DSM 2228] Length = 374 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 15/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + FRN+ L L + IF+G NG GKTN LE+I ++ R + +++ Sbjct: 1 MYLERVLCRNFRNFKELMLDLNPNLNIFLGANGQGKTNFLESIYLMATANSHRSSISSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + V+ + + IKL R +++ + ++IND + V EL +L Sbjct: 61 INWQQNK-----SLVQLLLRRREGKIKLAMRLEKNNKQVEINDNPLDKVKELFGYLNAVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180 P ++ RR F+D + + P + + ++ L+ RN+LL + Sbjct: 116 FSPEDLKLIKEGPSHRREFIDLEISQVSPYYNHLLSKYDHLLSQRNKLLKSIREGKSKNR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLSLTGFL-DGKFD 237 + Q+A +G KI + R+E+IN L + + + E +++L L Sbjct: 176 EMLPVWDEQLATIGTKIILKRIEVINKLKILARLSQRKITEGRENLELEYDTSLNHFSPK 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 L+ + L R + T+IGPHR D+I+ + + +GS G+Q+ + Sbjct: 236 MGEAELRNLFIDSLISKRDQEISRGYTVIGPHRDDIILRVNEMNLR-KYGSQGQQRTAAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA + + TG P+LLLD++ + LD +R AL I+ D Q +T TD Sbjct: 295 ALKLAELEFMKSETGEYPVLLLDDVFSELDGLRRKALINIIADK-IQTIITATDGENLSG 353 Query: 358 LNETA-KFMRISNHQA 372 L + ++ + Sbjct: 354 LKNNSYNVYQVKKGRI 369 >gi|310817865|ref|YP_003950223.1| DNA replication and repair protein RecF [Stigmatella aurantiaca DW4/3-1] gi|309390937|gb|ADO68396.1| DNA replication and repair protein RecF [Stigmatella aurantiaca DW4/3-1] Length = 481 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 92/375 (24%), Positives = 161/375 (42%), Gaps = 14/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L FRN + L TI VG NG GKTN+LEA+ FL+ + R A++ Sbjct: 1 MRLLALQAQNFRNLHQVSLAPSPHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ ARV G L ++ VR ++ ++E + + Sbjct: 61 VRWGTKG-----ARVSGRFLLKGAEREISVEVGGGVRQAFVDGKKASSLEEYFGGVAVVA 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSWC 183 P + G RR FLDR VF P + D+ R ++ RNRLL +G ++++ Sbjct: 116 FTPDDLEVVKGGPEARRTFLDRAVFNRFPAFLKESRDYARALKNRNRLLRDGPAAEAAYL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + +A G ++ + R ++ L+ + + G+ Q F + Sbjct: 176 DAYDETLARAGARVYVRRRALMAELAPRAQATFASIGR-TVDPAAYGYHPAHLAQEFAEV 234 Query: 244 KEEYAKKLFD-----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 E R+ D T +GPH D+ V ++ + S G+Q+ +++G Sbjct: 235 DEVRLADALLEALAGRRRRDLERGFTSVGPHVDDVAVTLGGRSARA-YASQGQQRALVLG 293 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 +A + GF P+LLLD++S+ LD ++ L + G+Q+F+T TD S+ + Sbjct: 294 WKIAEIENLHAALGFLPLLLLDDVSSELDPERNAYLMGYLAASGAQVFLTTTDASLVRAA 353 Query: 358 LNETAKFMRISNHQA 372 +M + Q Sbjct: 354 AAHDTLWMDVHAGQV 368 >gi|33151998|ref|NP_873351.1| recombination protein F [Haemophilus ducreyi 35000HP] gi|51316363|sp|Q7VMW3|RECF_HAEDU RecName: Full=DNA replication and repair protein recF gi|33148220|gb|AAP95740.1| DNA replication and repair protein RecF [Haemophilus ducreyi 35000HP] Length = 360 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 77/371 (20%), Positives = 149/371 (40%), Gaps = 18/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN ++ L VG NG GKT++LEAI +L GR F+ + Sbjct: 1 MPLSRLLINNFRNLQAIDLELSPDFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +F ++++ + + ++ D L+IN + + +L L + Sbjct: 61 IHHHAENF-VLHSKIDETQHQWSVGLQKNRAGDT---LLKINGEDGKKIADLAHLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + +RL++ RN L + S Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHQHLEFYSYWANLKRLLKQRNAALPQ-VKSYSELK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L + R E AL I E + P + + ++ + Sbjct: 176 AWDIELVRLAHLVTKMRTEYAEALRPEI-EKTCRFFLPELPIRVSFHQGWE-------NG 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L G + D T++GP ++D + S G+ K+++ + LA Sbjct: 228 ADYADVLRQGFERDQNIGYTMVGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360 + + L+D+ ++ LD KR L + + GSQ+F+T + ++ Sbjct: 287 EYLVTQKKRQCLFLIDDFASELDPMKRELLAHRLRETGSQVFVTAITAEQLNQMHWQEYA 346 Query: 361 TAKFMRISNHQ 371 K + + Sbjct: 347 QDKLFHLKEGK 357 >gi|229587581|ref|YP_002869700.1| recombination protein F [Pseudomonas fluorescens SBW25] gi|259563668|sp|C3KDU4|RECF_PSEFS RecName: Full=DNA replication and repair protein recF gi|229359447|emb|CAY46288.1| DNA replication and repair protein RecF [Pseudomonas fluorescens SBW25] Length = 367 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 158/373 (42%), Gaps = 15/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + + I G NG GKT++LEAI L R FR A V Sbjct: 1 MSLSRVSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + F +VE EG S+ + RD ++I+ R +L + L + Sbjct: 61 IQYEQLAC-TVFGQVELAEGGHS-SLGIS-RDRGGEFQIRIDGQNARSAAQLAEILPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P R+ G RR+FLD VF ++PR ++ +R RN L G D++ + Sbjct: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ +I+ R I AL + + + E L+L+ + ++ A+ Sbjct: 178 AWDRELCLASDEIDEYRRAYIKALKPVFEQTLS-ELLDLEGLTLSYYRGWDKERELSAV- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L + D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 ------LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNET 361 L+S I L+D++ + LDE R AL R++ ++ Q+F+T D + Sbjct: 289 HLVSQARRGQCIYLVDDLPSELDEQHRRALCRLLEELRCQVFITCVDHELLREGWQTETP 348 Query: 362 AKFMRISNHQALC 374 + + Sbjct: 349 VALFHVEQGRITQ 361 >gi|258510024|ref|YP_003183458.1| DNA replication and repair protein RecF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476750|gb|ACV57069.1| DNA replication and repair protein RecF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 371 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 77/371 (20%), Positives = 148/371 (39%), Gaps = 12/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +FRNYA + + VG+NG GKTN LEA+ ++ G+ R D+ Sbjct: 1 MDIRRVELHDFRNYAKAEIELSPGVNVLVGENGQGKTNALEAMLLIAVGKSHRAHRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G ++++L R N V + + E +++ Sbjct: 61 IRWEQDRA-RILLEASTRYGDRRLTLEL----GPEGRRAFANGVQVGRMTEFVGQVQVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--FDSSW 182 P + G RRRFLD + ++P + + + R + RNR L D Sbjct: 116 FAPEDLDLVKGSPRVRRRFLDTELGQMEPLYLHHLSLYNRALLQRNRWLKTAPLSPDDDV 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQS 239 ++ + Q+A G + R+ + L + + +L + + S Sbjct: 176 LATFDRQIAFHGAHVIHRRLRFLARLRAYAARIYSDIASGREEFALAYRSSVSGVEEGMS 235 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + + + L R D T GPHR D+++ + + A S G+Q+ + + + Sbjct: 236 VEEMADTVQRALEKNRAQDLRFGTTSAGPHRDDILLFLDGREVHTA-ASQGQQRTIALSL 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA + G P+LLLD++ + LD+ ++ L ++ Q +T T + Sbjct: 295 RLAEIDFMHEELGEYPVLLLDDVLSELDDLRQRNLVLGMSRK-VQTVITTTSLNRLGQEL 353 Query: 360 ETAKFMRISNH 370 + + R+ + Sbjct: 354 DDFRLFRVCSG 364 >gi|108763273|ref|YP_628527.1| DNA replication and repair protein RecF [Myxococcus xanthus DK 1622] gi|122981391|sp|Q1DFP6|RECF_MYXXD RecName: Full=DNA replication and repair protein recF gi|108467153|gb|ABF92338.1| DNA replication and repair protein RecF [Myxococcus xanthus DK 1622] Length = 380 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 165/374 (44%), Gaps = 12/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++ +FRN ++L A TI VG NG GKTN+LEA+ FL+ + R +++ Sbjct: 1 MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS ARV G L ++ R ++ +++ + + Sbjct: 61 VRWGSQG-----ARVTGRFLLKGAEREIAVEVGGGTRQAFVDGKKASSLEDYFGGVSVVA 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P + G RR FLDR VF P R ++ R ++ RNRLL EG+ D+ + Sbjct: 116 FTPDDLEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNRNRLLREGHTVDAVYL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF---PHIKLSLTGFLDGKFDQSF 240 + + +A+ G +I R ++ L+ P + L+G F + Sbjct: 176 EAYDETLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAAD 235 Query: 241 CALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + L + D T +GPH D+ V ++ + S G+Q+ +++G Sbjct: 236 ETALAAMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSARA-YASQGQQRALVLGW 294 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358 +A + GF P+LLLD++S+ LD ++ L + G+Q+ +T TD S+ + Sbjct: 295 KIAEIENLEAAMGFLPLLLLDDVSSELDPERNAYLMGYLAQSGAQVVLTTTDGSLVRGAA 354 Query: 359 NETAKFMRISNHQA 372 + ++ + Q Sbjct: 355 ADDTLWLDVHGGQV 368 >gi|154491038|ref|ZP_02030979.1| hypothetical protein PARMER_00957 [Parabacteroides merdae ATCC 43184] gi|154088786|gb|EDN87830.1| hypothetical protein PARMER_00957 [Parabacteroides merdae ATCC 43184] Length = 367 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 157/376 (41%), Gaps = 24/376 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L+I ++N + F + F G+NG+GKTN+L+A+ +LS + + + Sbjct: 1 MILKKLSILNYKNILQAEVSFSPEINCFFGNNGMGKTNLLDAVHYLSFCKSHINTPDSQL 60 Query: 65 TRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G EG E +I+ R + N + E L + Sbjct: 61 INNGQDMCVLQGNYDYEGREEEIFCAIRRRQRK-----QFKRNKKEYDKLSEHIGLLPLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P+ + G S ERRRFLD ++ D + +I + + + RN LL + D+S Sbjct: 116 MVSPADSELIQGGSEERRRFLDVIISQQDKPYLHALIQYNKALLQRNSLLKDQCIDASLY 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFC 241 +E Q+ G + R ++N + EY Q + + L L+ Sbjct: 176 EVLEMQLDMYGRMVYEKRQMLVNDFIPIFNEYYQTICRSTEQVGLRYISQLE-------- 227 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 K A L R+ D + T G H+ +L + I GS G+ K L+ + L Sbjct: 228 --KGSLADMLAANRERDRILGYTSTGIHKDELEMTLNGHLIRRV-GSQGQNKTYLIALKL 284 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360 A +S PILLLD+I LD D+ + ++V+ D QIF+T T++ D++ + Sbjct: 285 AQYVFLSCRGQARPILLLDDIFDKLDADRVEQIVKLVSGDQFGQIFITDTNRKYLDAILQ 344 Query: 361 T----AKFMRISNHQA 372 + R+ + Sbjct: 345 SINHGYALFRVEQGEV 360 >gi|154496130|ref|ZP_02034826.1| hypothetical protein BACCAP_00414 [Bacteroides capillosus ATCC 29799] gi|150274685|gb|EDN01749.1| hypothetical protein BACCAP_00414 [Bacteroides capillosus ATCC 29799] Length = 367 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 91/373 (24%), Positives = 159/373 (42%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + FRNY L F + G+N GKTN+LEAI +LS R ++ Sbjct: 1 MIVKSITLDFFRNYPHLETAFSPDVNVICGENAQGKTNLLEAIGYLSTASSRRARYDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 + G A V+ + LE R RSVR L N V ++ EL L Sbjct: 61 IQFG-----VDHAFVKAEVFSRERDFTLEARLGRSVRRQLLSNGVKLKTAGELAGVLNTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + + ERRRFLD + + PR+ + ++ RL + R+L + S Sbjct: 116 FFCPEDLMLIREGAAERRRFLDECICQLRPRYAAALAEYRRLHEQKTRILRDWEEKPSLL 175 Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +++ +MA+ G + R + L ++ + +L L Sbjct: 176 DTLDDFNLRMAQTGAILIHYRAHFVRRLRETAPPIHREFSGGREELGLKYETVSTVTDPE 235 Query: 241 CALKEEYAKKLFDG---RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +K+ + + R+ + +R+ L GPH+ DL V+ S G+ + + Sbjct: 236 GGVKDILSALIAHQESHRRAELEARQCLSGPHKDDLTVEL-GGVAARQFASQGQTRTAAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA + TG P+LLLD++ + LD+ +++ + + G Q+F+T + + Sbjct: 295 SLKLAAREIFYGDTGEWPVLLLDDVLSELDQRRQSFVLNRIK--GGQVFITCCEDEKLEH 352 Query: 358 LNETAKFMRISNH 370 L E K +RI N Sbjct: 353 L-EGGKVLRIHNG 364 >gi|261880338|ref|ZP_06006765.1| recombination protein F [Prevotella bergensis DSM 17361] gi|270333029|gb|EFA43815.1| recombination protein F [Prevotella bergensis DSM 17361] Length = 375 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 159/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N ++ +L F + F+G+NG GKTN+L+AI +LS V Sbjct: 1 MVLKNISIINYKNISAAQLAFSPKINCFIGNNGEGKTNLLDAIYYLSFCHSCFTNIDGQV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F V + +I++ L+ + N + + E + + + Sbjct: 61 LMHDKEFFVIDGEYVTDSGEIENINVGLKRGRG---KRFSRNKKNYKRLSEHIGLIPLIF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 PS + +G ERR+ +D ++ D R+ + + + + RN LL E D++ Sbjct: 118 ASPSDMTLVNGGGEERRKLMDIVIAQYDNRYIDALNAYNKAWQQRNALLKMEEEPDNTLL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E +MAE G + R + L+ + E Q + K+SL G+ Sbjct: 178 DLWETEMAEQGEIVYRKRDSFVKELTPVFQEIYQYISGQQEKVSLRYVSHGQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + R D +L G HR +L + D + GS G+ K ++ + LA Sbjct: 230 RGNLLEVIQRDRFKDRAVGYSLHGIHRDELEMLIGDYPMKRE-GSQGQIKTYVLALKLAQ 288 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + + P+LLLD+I LD + + R+V+ D QIF+T T++ D + Sbjct: 289 FDFLRRTASNTTPLLLLDDIFDKLDSQRVEQIVRLVSGDNFGQIFITDTNRGHLDKILSH 348 Query: 359 -NETAKFMRISNHQA 372 + K + + + Sbjct: 349 NHGEYKLFDVKSGEI 363 >gi|237721344|ref|ZP_04551825.1| DNA replication and repair protein RecF [Bacteroides sp. 2_2_4] gi|229449140|gb|EEO54931.1| DNA replication and repair protein RecF [Bacteroides sp. 2_2_4] Length = 372 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G +I ++ R + + N + L + Sbjct: 61 IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 117 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNALLKSEFSVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + + + L+ + Sbjct: 177 FLVWEEMMAQAGAIVFQKREAFIREFIPIFQSFYSFISQDKEVVGLSYESHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L R+ D + +L G H+ +L + + I GS G+ K LV + LA Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGWTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRGHLDRILHK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ Sbjct: 348 VGSDYKIFRVEEGTI 362 >gi|119961476|ref|YP_945837.1| recombination protein F [Arthrobacter aurescens TC1] gi|166220697|sp|A1R0S5|RECF_ARTAT RecName: Full=DNA replication and repair protein recF gi|119948335|gb|ABM07246.1| putative DNA replication and repair protein RecF [Arthrobacter aurescens TC1] Length = 399 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 167/392 (42%), Gaps = 41/392 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++++FR+YA + L T+ VG NG+GKTN++EAI +L+ R ++ A + Sbjct: 1 MYLEHLSLTDFRSYAQVDLKLGPGVTVLVGSNGIGKTNLMEAIGYLATLSSHRVSTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ R + + G I+LE R+ R +R D L + Sbjct: 61 LRFGTERALI---RAKLVRGEQSTVIELEINAGRANRGRINRSNPVRARDIL-GICQTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------F 178 P + G RRRFLD ++ ++ PRH D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPSNRRRFLDELLVSLVPRHAATRSDYDRVLKQRNALLKSARTGKFTAG 176 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFL 232 + + MA G ++ AR+E++ L + K+ + ++ G L Sbjct: 177 HEATLDVWDQHMARAGAELLHARLELVERLRPHLNSAYAQLTDASKDAGAVYRSTIQGVL 236 Query: 233 DGKFDQ-----------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 D S L E Y + RK + +L+GPHR +L + Sbjct: 237 DDDGGPTDHGTEPSPSVDDLRLLSVDELTERYVQAFAASRKKELERGISLVGPHRDELEL 296 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAP--ILLLDEISAHLDEDK 330 +A + S GE + + + LA ++ + T G AP IL+LD++ A LD + Sbjct: 297 -VLGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGTAPILILILDDVFAELDVHR 355 Query: 331 RNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361 R L IV Q+ +T D + + L Sbjct: 356 RRKLAAIVAGAE-QVLVTAAVDADIPEELAGR 386 >gi|255693357|ref|ZP_05417032.1| RecF protein [Bacteroides finegoldii DSM 17565] gi|260620834|gb|EEX43705.1| RecF protein [Bacteroides finegoldii DSM 17565] Length = 369 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 152/373 (40%), Gaps = 20/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEEVELGFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G +I ++ R + + N + L + Sbjct: 61 IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL E + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNTLLKSELPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + + ++ L+ + Sbjct: 177 FLVWEEMMAQAGEVVFKKREVFIKEFIPIFQSFYSFISQDKEQVGLSYDSHAR------- 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + L R+ D + +L G H+ +L + + I GS G+ K LV + LA Sbjct: 230 -EASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILHK 347 Query: 359 -NETAKFMRISNH 370 K + Sbjct: 348 VGSDYKMFLVEKG 360 >gi|300857420|ref|YP_003782403.1| DNA replication and repair protein [Corynebacterium pseudotuberculosis FRC41] gi|300684874|gb|ADK27796.1| DNA replication and repair protein [Corynebacterium pseudotuberculosis FRC41] Length = 421 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 97/383 (25%), Positives = 161/383 (42%), Gaps = 34/383 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L++ +FR++A + + T+FVG NG GKTNI+EAI +++ R + + + Sbjct: 18 VYIRELSLRDFRSWADCHVNLEPGVTVFVGRNGFGKTNIVEAIGYIAHLGSHRVSQDSPL 77 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G S S A +G E A + IK + QIN ++ L +R Sbjct: 78 VHQGKDSARVSVTAVNQGRELTAHMLIK-----SKGTNQAQINRTRLKSPRGLLGVVRTV 132 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181 P + G ERRR+LD +V PR D++++++ RN LL Sbjct: 133 LFSPEDLSLVRGEPGERRRYLDHIVATRKPRLAGVKADYDKVLKQRNSLLKTASASLRRG 192 Query: 182 ---------WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTG 230 +AQ+A LG ++ AR ++ L+ L+ + +++ Sbjct: 193 YGADDGTLCTLDVWDAQLARLGSELIHARHSLVEELTPLVHSAYARIAPESRPARINYES 252 Query: 231 FLDGKFD-----------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 + L+ +L RK + TL+GPHR DL V D Sbjct: 253 TVPVPVAVTDAEEASSSIPDLDVLEASMLSQLGVQRKKEIDRGLTLVGPHRDDLAVLLGD 312 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + S GE + + + LA L+S G PIL+LD++ A LD +R L I Sbjct: 313 YPAK-GYASHGETWSMALALRLAEFHLLS-ADGSEPILILDDVFAELDSKRRQKLVGIAM 370 Query: 340 DIGSQIFMT-GTDKSVFDSLNET 361 + Q+ +T + D+L E+ Sbjct: 371 EAE-QVLITAAVGDDLPDNLAES 392 >gi|330890247|gb|EGH22908.1| recombination protein F [Pseudomonas syringae pv. mori str. 301020] Length = 368 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 161/375 (42%), Gaps = 18/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + + ++++ RN + L + I G NG GKT++LEAI L R FR + Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLP 60 Query: 64 VTRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 V + PS + F +V+ G +++ + +RD + ++I+ R +L + L + Sbjct: 61 VIQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPL 116 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + P R+ G RR+FLD VF ++PR ++ ++ RN L G D++ Sbjct: 117 QLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAAS 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ + ++ +I+ R I AL + + + E L+L+ + ++ Sbjct: 177 QAAWDRELCSASDEIDEFRRAYIKALKPVFEQTL-GELVELEGLTLSYYRGWDKEKELST 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 V-------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LN 359 L+S I L+D++ + LD++ R AL R++ ++ Q+F+T D+ Sbjct: 288 QGHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTE 347 Query: 360 ETAKFMRISNHQALC 374 + + Sbjct: 348 TPVALFHVKQGRITQ 362 >gi|298372052|ref|ZP_06982042.1| RecF protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274956|gb|EFI16507.1| RecF protein [Bacteroidetes oral taxon 274 str. F0058] Length = 364 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 156/374 (41%), Gaps = 19/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +NI +RN LVF + +F G+NG+GKTN+L+A+ +LS + A + Sbjct: 1 MYLKKINILNYRNIEESELVFSPKINLFWGNNGMGKTNLLDAVYYLSFCKSHLNAIDNQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + FF + +A +S ++ R + N + + + + Sbjct: 61 IRHDTD-FFIIQGEYVFPDSIAKVSCSVKRRRKKQ---FLYNKKEYERLADHIGRIPLVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 + PS + S S ERRRF+D ++ + + +I + ++ RN +L Y D + Sbjct: 117 VSPSDSSLISEGSDERRRFMDIIISQYNREYLDNLISYNSALKSRNAMLKNNDYIDETML 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ I R E I + ++ ++ + ++ L + Sbjct: 177 EVFDEKLCANAAPIFRERTEFITNFIPVFKDFYRRISNKKEEVDLRYLSSLEH------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E KL R D T G H+ DL + ++ S G+ K LV + LA Sbjct: 230 -TELRDKLLQSRAKDKYLGFTTAGIHKDDLDMTLDGFSLKRT-ASQGQSKSYLVAMKLAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL---- 358 + +G PILLLD+I LD ++ + R ++ D QIF+T T+ D L Sbjct: 288 FVFLKQISGKTPILLLDDIFDKLDAERVENIIREISEDDFGQIFITNTNHEHIDKLISNN 347 Query: 359 NETAKFMRISNHQA 372 ++ + I + Sbjct: 348 SQDFRLFAIEEGKV 361 >gi|188995431|ref|YP_001929683.1| putative DNA replication and repair protein RecF [Porphyromonas gingivalis ATCC 33277] gi|226737817|sp|B2RL41|RECF_PORG3 RecName: Full=DNA replication and repair protein recF gi|188595111|dbj|BAG34086.1| putative DNA replication and repair protein RecF [Porphyromonas gingivalis ATCC 33277] Length = 364 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 96/376 (25%), Positives = 157/376 (41%), Gaps = 18/376 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L+I F++ A+ F + VG+NG+GKTN+L+A+ FLS R V Sbjct: 1 MIIEELHIVNFKSIAAADCRFSPKVNCLVGNNGMGKTNLLDALHFLSFCRSHLSVPDNMV 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + R E +G I + L R + + L+ N + + H + Sbjct: 61 VRHGEEMALLQGLYRDESGDG---IELLLSIRPGK-HKVLRRNKKEYERLSDHIGHFPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P ++ G S ERRRF+D+ + DPR+ +I + R ++ RN +L + D + Sbjct: 117 IVSPQDYQLILGGSDERRRFMDQQLCQQDPRYLSALIQYNRHLQQRNTMLKQDRHDDALM 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QM +I R I + + + K+SL+ L Sbjct: 177 DVLELQMGSYAAEIYNKRSRFIEDFLPVFNDLYSDISGSAEKVSLSYRSHLADGIPLEEL 236 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L R D + + G H+ +L + + GS G+ K L+ + LA Sbjct: 237 -------LRRSRPKDYLLGFSSCGVHKDELEM-LLGGVLIRKIGSEGQNKTFLISMKLAQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL---- 358 R PILLLD+I LD + + R+V G QIF+T T++ D + Sbjct: 289 FRHQQLHGDETPILLLDDIFDKLDATRVERIIRLVGGNGFGQIFITDTNRKNLDEIIASW 348 Query: 359 NETAKFMRISNHQALC 374 +E + I N Q Sbjct: 349 SEDYRLFEIENGQIFQ 364 >gi|78043999|ref|YP_361489.1| DNA recombination/replication protein RecF [Carboxydothermus hydrogenoformans Z-2901] gi|123575248|sp|Q3A8P5|RECF_CARHZ RecName: Full=DNA replication and repair protein recF gi|77996114|gb|ABB15013.1| DNA recombination/replication protein RecF [Carboxydothermus hydrogenoformans Z-2901] Length = 353 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 161/368 (43%), Gaps = 16/368 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FRNY L + F + G NG GKTN++EAI +L G+ FR + Sbjct: 1 MFVDRLQLLNFRNYEELLIDFSPGKILIYGANGQGKTNLIEAIYYLVIGKSFRG-KDNSL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ SF A++ + ++ + + N + + +L+ Sbjct: 60 IRFGAESF-QIGAKISKNGQKTTLGVEYSVKG----KFFLKNGQKQKSFSSILGNLKGVL 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P IF G RR+ LD + + +I +++++ +N LL + + + Sbjct: 115 FTPDEPVIFFGFPANRRKALDLFLAQTSKTYLLNLIYYQKVLTNKNALLKQVWNVDNLIE 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++AE G +I R + + L+ +I E + F L G ++ + S K Sbjct: 175 AWNYKLAEFGAEIIKEREKCLKILNDIINELNAQLRF------LPGKIEASYKTSGADDK 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ + L + ++ L GPHR DL + + I GS G++K L+ L+ A Sbjct: 229 EKIFELLKQKYTEEKDKKQALFGPHRDDLNFYVNGRDLKI-FGSQGQKKGALLLFKLSQA 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 ++ +G P++LLD++ + D++KR AL Q+F+T T+ L + Sbjct: 288 VYMAKVSGEKPVVLLDDLYSEFDKEKREALEGFFLKYSDQVFITATEPI---DLKNYHQV 344 Query: 365 MRISNHQA 372 + I N + Sbjct: 345 VFIENGKV 352 >gi|88860614|ref|ZP_01135251.1| gap repair protein with nucleoside triP hydrolase domain [Pseudoalteromonas tunicata D2] gi|88817209|gb|EAR27027.1| gap repair protein with nucleoside triP hydrolase domain [Pseudoalteromonas tunicata D2] Length = 364 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 165/374 (44%), Gaps = 17/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRN A L I G+NG GKT++LEAI +LS G+ FR Y + Sbjct: 1 MSLELVTVKNFRNLADLSFSPVDGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTIKYKTI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +F A+ + L + I D L+I V R + EL + + + Sbjct: 61 IQHHQDTF-VIHAKKRIDQLLLPVGISKNQAGDTE---LKIQGKVSRKIAELAELIPVQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SWC 183 + P +F G ERR+FLD +F ++ + F +L++ RN LL + + Sbjct: 117 ITPESYALFFGGPKERRKFLDFGLFHVEHHFFSLWLSFNKLLKQRNALLKQKPHNYHEQI 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + L ++IN R + S+ + + L+L L+ K++ + Sbjct: 177 KYWDKEFVRLSLEINTLRKTYLERFRSVFFDKIAAN------LTLIVNLEIKYNSGWKD- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + E ++ L D T GPH++DL D ++ + S G+ K+++ + + Sbjct: 230 EAELSELLIQSFTRDVKQGFTSFGPHKADLTFSVND-SLVENYFSRGQLKLLIYALKVTQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 +I T ILL+D++S+ L D R + +++ SQIF+T + ++ E K Sbjct: 289 NYIIEAETQKQSILLIDDLSSELSIDTRKDVGQLLAQCNSQIFITAIESESISAVLEPMK 348 Query: 364 ----FMRISNHQAL 373 + + + + Sbjct: 349 RKLEMFHVKHGKLI 362 >gi|25026560|ref|NP_736614.1| recombination protein F [Corynebacterium efficiens YS-314] gi|259508308|ref|ZP_05751208.1| RecF protein [Corynebacterium efficiens YS-314] gi|51316473|sp|Q8FUL4|RECF_COREF RecName: Full=DNA replication and repair protein recF gi|23491839|dbj|BAC16814.1| putative DNA replication and repair protein RecF [Corynebacterium efficiens YS-314] gi|259164126|gb|EEW48680.1| RecF protein [Corynebacterium efficiens YS-314] Length = 398 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 93/377 (24%), Positives = 161/377 (42%), Gaps = 27/377 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + +FR++ L++ TIF+G NG GKTNI+EAI +L+ R ++ A + Sbjct: 1 MYIRSLELRDFRSWPELKVELKPGITIFIGRNGFGKTNIVEAIGYLAHLSSHRVSTDAPL 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R + + S A +G E A + IK + QIN ++ EL ++ Sbjct: 61 VRANAGDARISAVAVNQGRELAAHLLIK-----PHAANQGQINRTRVKSPRELLGVIKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174 P + G ERRR+LD ++ PR D++++++ RN LL Sbjct: 116 LFAPEDLALVRGEPAERRRYLDDIIATRRPRMAGVKADYDKVLKQRNALLKTATIALRRG 175 Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228 EG + + + Q+A LG ++ AR ++ LSS I + Q ++ Sbjct: 176 YGTEEGAAALATLDTWDGQLARLGAEVMAARFALVQDLSSQIRDAYQTIAPESRPAAVNY 235 Query: 229 TGFLDGKFDQ----SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 +D Q ++ +L R+ + +L+GPHR DL + + Sbjct: 236 KTTIDQGLAQFGEFDAGIIEATLLTELAAKRQREIERGMSLVGPHRDDLEL-HLGGQPAK 294 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 S GE + + +A L+ + G PIL+LD++ + LD +R L I D Sbjct: 295 GFASHGETWSFALSMRIAEFNLL-RSDGTDPILILDDVFSELDAGRREKLVGIARDAEQV 353 Query: 345 IFMTGTDKSVFDSLNET 361 I + +L + Sbjct: 354 IITAAVSDDLPANLADA 370 >gi|323137241|ref|ZP_08072320.1| DNA replication and repair protein RecF [Methylocystis sp. ATCC 49242] gi|322397599|gb|EFY00122.1| DNA replication and repair protein RecF [Methylocystis sp. ATCC 49242] Length = 391 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 206/367 (56%), Gaps = 5/367 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +S+FR+YA R +A+ G+NG GKTN+LEA+S SPGRG RRA A+ R Sbjct: 26 VRRLTLSDFRSYAQARCDIEARLVALSGENGAGKTNVLEALSMFSPGRGLRRAELAECAR 85 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F+ +E + L + R +I+ I H+R+ WL Sbjct: 86 RDGAGGFAVSIEIEIGGVTTQLGHGLTEDGE---RRFRIDRAPIGSARAFADHIRVLWLT 142 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P+MD +F+G + ERRRFLDR+ +D H R+ ER +R RNRLL EG D W + Sbjct: 143 PAMDGLFAGPAGERRRFLDRLALGVDADHGARVNRLERALRNRNRLLEEGVSDRRWLDAA 202 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-ALKE 245 E ++A +GV AR E ++ LS+LI + FP ++++ G ++ ++ A+++ Sbjct: 203 EQEIASIGVAAAAARRETVSRLSALIAS-GGESPFPWAEIAIQGEIETMLAEAPALAVED 261 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 + + L R+ D+ + RTL GP SDL V + K STGEQK +L+G+ LAHAR Sbjct: 262 RFREMLAATRRRDAAAGRTLTGPQTSDLAVRHGPKNEAARDCSTGEQKALLMGLTLAHAR 321 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L++ T AP+LLLDE++AH D +R ALF + +G Q++MTG D +F SL A+ + Sbjct: 322 LVTAMTRKAPLLLLDEVAAHFDVKRREALFDELESLGGQVWMTGADPLLFASLQGRAEML 381 Query: 366 RISNHQA 372 +++ + Sbjct: 382 QVTPGRI 388 >gi|332291116|ref|YP_004429725.1| DNA replication and repair protein RecF [Krokinobacter diaphorus 4H-3-7-5] gi|332169202|gb|AEE18457.1| DNA replication and repair protein RecF [Krokinobacter diaphorus 4H-3-7-5] Length = 363 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 163/377 (43%), Gaps = 24/377 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N+ S FDA+ FVG+NGVGKTNIL+AI LS G+ + + Sbjct: 1 MILKSLSLINYKNFESKDFTFDAKINCFVGNNGVGKTNILDAIYHLSFGKSYFNPVTSQN 60 Query: 65 TRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + F +G + +S K S + ++ N + + L + Sbjct: 61 INHDADFFVVNGVYEKDGRDEKVVVSAK-----KGSKKVIKRNAKIYERFADHIGFLPLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 + P+ + + S RR+F+D ++ D + ++ + +++ RN LL F+ Sbjct: 116 IISPADRDLITEGSDTRRKFIDGVISQSDKSYLSNLLGYSKILAQRNALLKYFAANSTFN 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + Q+ G I R + + + + E + + ++LT S Sbjct: 176 ADTLAVYNEQLEGFGTPIFEKRKQFLERFAPIFNERYKAISGGTEHVTLTYSSTL----S 231 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 LK L D + T +G H+ DL + + GS G+QK L+ + Sbjct: 232 DMPLKHSLTNALA----KDRSLQYTSVGIHKDDLQFEINGHPVK-KFGSQGQQKSYLIAL 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTD----KSV 354 LA I +G P+LLLD+I LDE + + +V T+ Q+F++ T +SV Sbjct: 287 KLAQFDFIKQESGTTPLLLLDDIFDKLDESRVQHIIELVNTNDFGQLFISDTHPERTESV 346 Query: 355 FDSLNETAKFMRISNHQ 371 +++++ + + Q Sbjct: 347 VKNIHQSYELFHLERAQ 363 >gi|256842142|ref|ZP_05547647.1| DNA replication and repair protein recF [Parabacteroides sp. D13] gi|256736458|gb|EEU49787.1| DNA replication and repair protein recF [Parabacteroides sp. D13] Length = 365 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 158/375 (42%), Gaps = 22/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N ++F + F G+NG+GKTN+L+AI +LS + + + Sbjct: 1 MILKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKSHVNTPDSQI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +I + R + + N + E L + Sbjct: 61 INSDQD-LCVVQGNYDYEGREEEIFCAMRRRQRK---QFKRNKKEYDKLSEHIGLLPLVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P+ + G S ERRRFLD ++ D + +I + + + RN LL + D+S Sbjct: 117 VSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSMDASLYE 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCA 242 +E Q+ G + R +++ + + EY Q + + L L+ Sbjct: 177 VLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQTICGSAEEVGLHYISQLE--------- 227 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + E A KL R+ D + T G H+ +L + + + GS G+ K L+ + LA Sbjct: 228 -ETELAGKLAMSRERDRILGYTSSGIHKDELEMTL-GRYLIRRVGSQGQNKTYLIALKLA 285 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL--- 358 ++ PILLLD+I LD + + ++V++ G QIF+T T++ D + Sbjct: 286 QFAFLNKRGQTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLDEILLA 345 Query: 359 -NETAKFMRISNHQA 372 N R+ + Sbjct: 346 MNHDYALFRVERGEV 360 >gi|39995113|ref|NP_951064.1| recombination protein F [Geobacter sulfurreducens PCA] gi|81703762|sp|Q74H90|RECF_GEOSL RecName: Full=DNA replication and repair protein recF gi|39981875|gb|AAR33337.1| recF protein [Geobacter sulfurreducens PCA] gi|307634642|gb|ADI82866.2| DNA replication and repair protein RecF [Geobacter sulfurreducens KN400] Length = 365 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 12/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + IS FRN + + FD + + G NG GKT++LEAI L + FR A D+ Sbjct: 1 MHLNAIAISAFRNIDHVEISFDRRFNVLHGANGQGKTSVLEAIYLLGTMKSFRMAKAHDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +P + V G A + ++ R R +I+ + + + + Sbjct: 61 IAWNAP-----HSLVRGDIDKAGVRREIALYLGREGRKARIDRKPVTKLADFFGAVNAVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRR+LDR +F D + ++ RL++ RN LL G D Sbjct: 116 FSPEEIGMARGGPELRRRYLDRAIFNGDLGYLLLHHEYHRLLKQRNALLRRGERDG--LE 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 Q+AE G ++ + R ++ + L+ ++ + ++ L G Sbjct: 174 VWTIQLAEAGARLMVKRRAYLSQIEPLVRQFYRDIAGAGQEVGLAYRCHGLASAEGERDC 233 Query: 245 EEYAKKLFDGRKMDS-MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++L + + T +GPHR D+ + + HGS GEQ+ ++ + +A Sbjct: 234 AAALRELMAAHEAEELRRGATGVGPHRDDVDF-ILNGRVIRHHGSQGEQRSFVLAVKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV--FDSLNET 361 + G P+LLLD+IS+ LD ++ L + Q+F+T TD S + ++ Sbjct: 293 IEYLERLNGAPPVLLLDDISSELDPERNANLMTFLRGKRMQVFITTTDVSTLRLEGIDTH 352 Query: 362 AKFMRISNHQALCI 375 A R+S + Sbjct: 353 AS-FRVSRGTVTPV 365 >gi|262193329|ref|YP_003264538.1| DNA replication and repair protein RecF [Haliangium ochraceum DSM 14365] gi|262076676|gb|ACY12645.1| DNA replication and repair protein RecF [Haliangium ochraceum DSM 14365] Length = 382 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 91/382 (23%), Positives = 160/382 (41%), Gaps = 23/382 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + RN A L L + +F GDNG GKTN+LE I + R FR A++ Sbjct: 1 MLVRALKLEGIRNLAPLTLTPGPRFNVFHGDNGQGKTNLLETIYVVGALRSFRTQRLAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +F A + + E + R ++++ +R + + + Sbjct: 61 I-----AFERDRAYIGARIQRGGLERVYELVQRQRGRQVRLDGKAVRPISKYFGDFNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------Y 177 P ++ G ERRRFLDR VF PR+ + ++++++ RN LL E Sbjct: 116 FAPEDLQVPRGSPAERRRFLDRAVFNRSPRYLGEVQAYDKVVKNRNALLRELGSGKRSLR 175 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDG- 234 + + + Q+AELG + RV ++ + E Q + +S +D Sbjct: 176 QAGDFLAVFDQQLAELGALLMRYRVHFLDEIRPRFQEAFQSITHTGLAVDVSYASAVDIT 235 Query: 235 ------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + L A + + R D + +GPHR DL+ + D A S Sbjct: 236 QASDSAESGPGSEQLTRALAAAIAERRPRDLARGSSSVGPHRDDLVFEL-DGHPAAAFAS 294 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+ + +++ A +L+++T G P+LLLD++S+ LD + LF + Q F+T Sbjct: 295 QGQLRALVLAWKTAEMQLLAHTHGEEPVLLLDDVSSELDATRNGYLFEFLKARRGQCFIT 354 Query: 349 GTDKSVFDSLNETAKFMRISNH 370 T L+ + R+ Sbjct: 355 TTHPRHV-LLSSEREDYRVEGG 375 >gi|227506185|ref|ZP_03936234.1| recombination protein F [Corynebacterium striatum ATCC 6940] gi|227197209|gb|EEI77257.1| recombination protein F [Corynebacterium striatum ATCC 6940] Length = 392 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 166/380 (43%), Gaps = 27/380 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L++ +FR++ L + T+FVG NG GKTNI+EAI +++ R + A + Sbjct: 1 MFIRELDVRDFRSWPELSIELGPGITLFVGRNGYGKTNIVEAIGYVAHLSSHRVSHDAPL 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R + + ST A +G E A + IK + QIN ++ EL ++ Sbjct: 61 VRQSAVNARISTTAVNQGRELTAHLLIK-----PHAANQAQINRTRLKSPRELLGVVKSV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176 P + G ERR +LD ++ + PR D++++++ RN LL G Sbjct: 116 LFSPEDLAVVRGEPAERRTYLDNIIASRTPRLAGVKADYDKVLKQRNALLKSASSSLRRG 175 Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228 Y DS + +AQ+A LG ++ AR+ +++ALS LI + Sbjct: 176 YGDSDGASALATLDVWDAQLARLGAQVIEARLALVDALSELIPSAYAGLAPESRPAHIEY 235 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 +D + A+ +L R+ + +L+GPHR DL+++ + S Sbjct: 236 KSTIDVSDREVLEAV---MLTELAAKRQREIERGISLVGPHRDDLVLNLGTQPAK-GFAS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G PIL+LD++ A LD +R L + + Q+ +T Sbjct: 292 HGETWSYAISLRLAEFNLLRQ-DGTDPILILDDVFAELDAKRREKLVHLAAEAE-QVLIT 349 Query: 349 GTDKSVFDSLNETAKFMRIS 368 E ++ Sbjct: 350 AAVDEDLPGNLEPIVRYEVT 369 >gi|262200049|ref|YP_003271257.1| DNA replication and repair protein RecF [Gordonia bronchialis DSM 43247] gi|262083396|gb|ACY19364.1| DNA replication and repair protein RecF [Gordonia bronchialis DSM 43247] Length = 397 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 158/378 (41%), Gaps = 29/378 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FR++ + L A+ T+F G NG GKTNILEA+ +L+ R R ++ A + Sbjct: 1 MFVRELHLRDFRSWRTADLELAAEPTVFTGRNGFGKTNILEALQYLATLRSHRVSTDAPL 60 Query: 65 TRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G+ S T G E A + I E IN+ R E+ LR Sbjct: 61 VHSGATSALVTATVENSGRELTAQLRINAE-----GANKASINNGPPRRAREVIGILRTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176 P + G +RRRF+D +V P H D++R++R R LL G Sbjct: 116 LFAPEDLSLVRGDPTDRRRFIDELVAQRGPLHVAARSDYDRVLRQRAALLKTAGAAMRRG 175 Query: 177 YFDS----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 D+ S +AQ+AE G + ARV+++N L + E PH + + +L Sbjct: 176 GGDAASVISTLDVWDAQLAEHGAAVTAARVDVLNELRPHVTEAYASI-APHSRPTDLAYL 234 Query: 233 DGKFDQ---------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 A+ E +L R + L+GPHR D+ + D I Sbjct: 235 PAAGPDVLPPAGARADVAAIGETLLAQLAQVRTKEIERGVCLVGPHRDDVGIILGD-DIA 293 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 S GE + + + L ++ G P+++LD++ A LD +R L +D Sbjct: 294 KGFASHGESWSLALALRLGSV-ALTRAEGVEPVIMLDDVFAELDATRRRKLATFTSDAEQ 352 Query: 344 QIFMTGTDKSVFDSLNET 361 + + + D + Sbjct: 353 LLVTAAVAEDIPDEIGGR 370 >gi|108796985|ref|YP_637182.1| recombination protein F [Mycobacterium sp. MCS] gi|119866069|ref|YP_936021.1| recombination protein F [Mycobacterium sp. KMS] gi|123369971|sp|Q1BG58|RECF_MYCSS RecName: Full=DNA replication and repair protein recF gi|166220717|sp|A1U8S3|RECF_MYCSK RecName: Full=DNA replication and repair protein recF gi|108767404|gb|ABG06126.1| DNA replication and repair protein RecF [Mycobacterium sp. MCS] gi|119692158|gb|ABL89231.1| DNA replication and repair protein RecF [Mycobacterium sp. KMS] Length = 380 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 164/376 (43%), Gaps = 18/376 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR++A L + T+FVG NG GKTN++EA+ + + R AS A + Sbjct: 1 MFVRHLTLTDFRSWARADLELEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+P + V ++++ LE R+ + ++N +R E+ LR Sbjct: 61 IRVGAPRAVVSTIVVNEG---RELAVDLEITTGRANKA-RLNRSPVRSPREVLGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G ERRR+LD + P D++R++R R LL D Sbjct: 117 FAPEDLALVRGDPGERRRYLDELATTRRPSIAGVRADYDRVIRQRTALLKSAAGARYRGD 176 Query: 180 SS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234 S + +A G + AR ++++ L+ + + Q + +D Sbjct: 177 RSVLETLDVWDGHLAAHGALLMAARADLVHHLAPEVEKAYQLLAPGSRPAAIRYRTSIDA 236 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + D S + + R + L+GPHR DL + D+ + + S GE Sbjct: 237 EDDVSAEYYEAALLDAMTRRRDAELERGVCLVGPHRDDLELRLGDQ-MAKGYASHGESWS 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + + LA L+ T G P+LLLD++ A LD +R AL V Q+ +T + Sbjct: 296 MALSLRLAAYELL-RTDGSDPVLLLDDVFAELDAARRRALAE-VAASAEQVLVTAAVAED 353 Query: 354 VFDSLNETAKFMRISN 369 + + +R+ + Sbjct: 354 IPADWDARRIMIRMQD 369 >gi|299148571|ref|ZP_07041633.1| RecF protein [Bacteroides sp. 3_1_23] gi|298513332|gb|EFI37219.1| RecF protein [Bacteroides sp. 3_1_23] Length = 372 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G +I ++ R + + N + L + Sbjct: 61 IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 117 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFSVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E MA+ G + R I + + + + L+ + Sbjct: 177 FLVWEEMMAQAGAIVFQKREAFIREFIPIFQSFYSFISQDKEVVGLSYESHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L R+ D + +L G H+ +L + + I GS G+ K LV + LA Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGWTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRGHLDRILHK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ Sbjct: 348 VGSDYKIFRVEEGTI 362 >gi|323703939|ref|ZP_08115569.1| DNA replication and repair protein RecF [Desulfotomaculum nigrificans DSM 574] gi|323531097|gb|EGB21006.1| DNA replication and repair protein RecF [Desulfotomaculum nigrificans DSM 574] Length = 367 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 80/372 (21%), Positives = 153/372 (41%), Gaps = 15/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + ++ FRNYA + I G N GKTN+LE+I + G FR DV Sbjct: 1 MRVENITLNNFRNYAKVSFKPHPSINIITGHNAQGKTNLLESIYYSLKGHSFRADRDRDV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + A + ++ ++ S + ++N + + + Sbjct: 61 IKWQQET-----AVINTEIMVSSRQFLIQWLIKASGKKFRLNGTEVPRAE--LDQFGVVL 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P + G ERRRFLD V + P + + R++ RN LL E + Sbjct: 114 FCPEDLYLVKGSPQERRRFLDLEVGPLHPGYSHACRQYARVLSQRNILLKEIRGRQANPD 173 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+ G ++ R++++ L + + +L D SF Sbjct: 174 ILDIWDEQLYRHGARVIFLRLQVLKKLIPVARSIHLELTNGLEQLQAKYLSSLVLDLSFS 233 Query: 242 A--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + + +++ RK++ +TL+GPHR D+ + + A GS G+Q+ V + + Sbjct: 234 EEQIYQVFSQAAKQIRKLEIDRCQTLLGPHRDDISLAI-NGAEAKTFGSQGQQRTVTLSL 292 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358 L+ L G P+LLLD++ LD +++ L + D Q F+T + D+ + Sbjct: 293 KLSVLELWYREFGHYPVLLLDDVLFELDHNRQTMLLDKLQDK-VQTFITTSFPGGIDNQI 351 Query: 359 NETAKFMRISNH 370 + + R+ Sbjct: 352 KQVGQVWRVHAG 363 >gi|126432617|ref|YP_001068308.1| recombination protein F [Mycobacterium sp. JLS] gi|166220716|sp|A3PSE0|RECF_MYCSJ RecName: Full=DNA replication and repair protein recF gi|126232417|gb|ABN95817.1| DNA replication and repair protein RecF [Mycobacterium sp. JLS] Length = 380 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 163/376 (43%), Gaps = 18/376 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR++A L + T+FVG NG GKTN++EA+ + + R AS A + Sbjct: 1 MFVRHLTLTDFRSWARADLELEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+P + V ++++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGAPRAVVSTIVVNEG---RELAVDLEITTGRANKA-RLNRSPVRSPREVLGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G ERRR+LD + P D++R++R R LL D Sbjct: 117 FAPEDLALVRGDPGERRRYLDELATTRRPSIAGVRADYDRVIRQRTALLKSAAGARYRGD 176 Query: 180 SS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234 S + +A G + AR ++++ L+ + + Q + +D Sbjct: 177 RSVLETLDVWDGHLAAHGALLMAARADLVHHLAPEVEKAYQLLAPGSRPAAIRYRTSIDA 236 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + D S + + R + L+GPHR DL + D+ + + S GE Sbjct: 237 EDDVSAEYYEAALLDAMTRRRDAELERGVCLVGPHRDDLELRLGDQ-MAKGYASHGESWS 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + + LA L+ T G P+LLLD++ A LD +R AL V Q+ +T + Sbjct: 296 MALSLRLAAYELL-RTDGSDPVLLLDDVFAELDAARRRALAE-VAASAEQVLVTAAVAED 353 Query: 354 VFDSLNETAKFMRISN 369 + + +R+ + Sbjct: 354 IPADWDARRIVIRMQD 369 >gi|219871719|ref|YP_002476094.1| recombination protein F [Haemophilus parasuis SH0165] gi|254790479|sp|B8F744|RECF_HAEPS RecName: Full=DNA replication and repair protein recF gi|219691923|gb|ACL33146.1| DNA replication and repair protein RecF [Haemophilus parasuis SH0165] Length = 361 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 76/371 (20%), Positives = 161/371 (43%), Gaps = 18/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN ++ L + F+G NG GKT++LEAI +L G+ F+ + Sbjct: 1 MSLSRLIINNFRNLTAVDLELNHGFNFFIGANGSGKTSLLEAIFYLGHGKSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + F +++ E + S+ L+ ++ + L+IN + + +L L + Sbjct: 61 IKYNQEEF-TLFGKIQ--EEKHECSVGLQ-KNRQGETILRINGESNKKIADLAYLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G + RR FLD +F + +RL++ RN L + + Sbjct: 117 ITPEGLTLLNGGPIYRRAFLDWGLFHQNTDFYHNWNSLKRLLKQRNAALVQTRHYNE-LK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++++ ++ +R + ++ + I + Q P ++++ T + + ++ Sbjct: 176 PWDVELSKFAQIVSQSRAVYVESILTYIEKNCQ-FFLPELEITATFYQGWEKER------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L G + D T++GP ++D + S G+ K+++ + LA Sbjct: 229 -DYADLLAQGFERDRSVGYTMVGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL----NE 360 I L+D+ ++ LD K L + GSQ+F+T + + + Sbjct: 287 EYFIAQKNRQCIFLIDDFASELDTQKCELLADRLYQSGSQVFVTAITQEQLKPIQGKRQD 346 Query: 361 TAKFMRISNHQ 371 A I + + Sbjct: 347 NATSFFIKDGK 357 >gi|72160410|ref|YP_288067.1| recombination protein F [Thermobifida fusca YX] gi|97181072|sp|Q47U20|RECF_THEFY RecName: Full=DNA replication and repair protein recF gi|71914142|gb|AAZ54044.1| DNA replication and repair protein RecF [Thermobifida fusca YX] Length = 377 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 158/381 (41%), Gaps = 21/381 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L ++++R+Y + L + + F+G NG GKTN++EAI +++ R A A + Sbjct: 1 MHVSHLQLADYRSYEAAYLELEPGVSTFIGPNGQGKTNLVEAIGYVATHSSHRVAHDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A V I+LE R+ R ++N + ++ L Sbjct: 61 VRRGAQRAVIRAAVV---RHGQTALIELEINPGRANRA-RLNRSPNTRMRDVLGILHTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------E 175 P + G ERRRFLD ++ A PR+ D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARAPRYAGVRSDYERVLKQRNALLKSAAAQNLHHR 176 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 G D + +A++G ++ AR+ ++ L L + + +SL Sbjct: 177 GGRDLPTLDVWDEHLAQIGAELLAARLALVAELQPLAAKAYGELTATQDPISLRYRCSAT 236 Query: 236 FDQ----SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 ++ + L E L R + +L+GPHR DL + D + S GE Sbjct: 237 DEELDTTNRPQLVEILRAALLRARPDELRRGVSLVGPHRDDLQLWLNDLPAK-GYASQGE 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + LA L+ G P+LLLD++ A LD ++R L V Q+ +T Sbjct: 296 SWSYALALRLAGFELL-RADGDDPVLLLDDVFAELDAERRRRLASYVRTAE-QVLVTAAV 353 Query: 352 KSVFDSLNETAKFMRISNHQA 372 A+ R++ Sbjct: 354 PDDVPQELSGAR-FRVTGGSV 373 >gi|294647035|ref|ZP_06724648.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CC 2a] gi|294809889|ref|ZP_06768565.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens SD CC 1b] gi|292637612|gb|EFF56017.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CC 2a] gi|294442918|gb|EFG11709.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens SD CC 1b] Length = 375 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 4 MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 63 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G +I ++ R + + N + L + Sbjct: 64 IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 120 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALVQRNTLLKSEFPVEEEL 179 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E M++ G + R I + + + + L+ + Sbjct: 180 FLVWEEMMSQAGEIVFRKREAFIREFIPIFQSFYSFISQDKEAVGLSYESHARD------ 233 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L R+ D + +L G H+ +L + + I GS G+ K LV + LA Sbjct: 234 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 291 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRGHLDRILHK 350 Query: 359 -NETAKFMRISNHQA 372 K R+ Sbjct: 351 VGSDYKIFRVEEGTI 365 >gi|240950077|ref|ZP_04754379.1| recombination protein F [Actinobacillus minor NM305] gi|240295452|gb|EER46207.1| recombination protein F [Actinobacillus minor NM305] Length = 361 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 73/370 (19%), Positives = 156/370 (42%), Gaps = 18/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FRN ++ L Q +G NG GKT++LE+I +L GR F+ + Sbjct: 1 MPLSRLIVQNFRNLQAVDLTLSPQFNFIIGANGSGKTSLLESIFYLGHGRSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F ++E + + I+ + + + L+IN + +L + L + Sbjct: 61 IHHDAD-HFVLHGKIEETQHSWSVGIQKQRSGETT---LKINGEDGNKIADLAQLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR FLD +F ++ +RL++ RN L + Sbjct: 117 ITPEGLTLLNDGPSYRRAFLDWGLFHQHTEFYNDWVNLKRLLKQRNAALHQVRSYFE-LK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ +L K++ R + A+ I + + P +++ ++ + + Sbjct: 176 AWDIELVKLAEKVSQMRAAYVEAILPEIDKTC-RFFLPELEIQMSFYQGWER-------G 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L G + D T++GP ++DL + + S G+ K+++ + LA Sbjct: 228 ADYADILAQGFERDQSLGYTMMGPQKADLRIKANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL----NE 360 + + L+D+ ++ LD KR L + + + SQ+F+T K + + ++ Sbjct: 287 EFLMTQKARQCLFLVDDFASELDPTKRELLSQRLRESHSQVFVTAITKEQLNQMQWQEHQ 346 Query: 361 TAKFMRISNH 370 T + Sbjct: 347 TDLSFEVKEG 356 >gi|330444455|ref|YP_004377441.1| DNA replication and repair protein recF [Chlamydophila pecorum E58] gi|328807565|gb|AEB41738.1| DNA replication and repair protein recF [Chlamydophila pecorum E58] Length = 358 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 154/365 (42%), Gaps = 11/365 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L + FR+Y + F + G N GKTN+LEA+ LS GR FR ++ Sbjct: 1 MKIVSLTLKNFRSYKDTEVSFAPRVNYISGSNAQGKTNLLEALYILSLGRSFRTQHLSEA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ FF A S L D+ + L ++ ++ + E+ + + Sbjct: 61 IAFGASYFFLKIA-----FEKFSCSHTLSIYVDKYGKKLLFDNAPVKTLSEMIGKVPMVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + SG +RR FL+ ++ DP + + +++ + RN LL +++ S Sbjct: 116 FSSKDRLLISGAPADRRLFLNLLLSQCDPYYTHTLSYYQQALLQRNALLK--TKNTATIS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 Q+A+LG I R + L+ L+ H+ L L L Sbjct: 174 VWNEQLAKLGGYITFQRYTCCDKLNVLMQSLWSNPLKEHLLLKFKSSLIKTPAPKEEELS 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +E K+L D + T +GPHR D + ++ S G++ L + LA + Sbjct: 234 QELLKQLLHSLPRDLELKSTSVGPHREDFTLMM-NQEPASTFASEGQKHSFLTILRLAES 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + + +P++ +D++ A LD + + L ++ + G Q +T T +L E +K Sbjct: 293 LYLQHHHNLSPLVCIDDLHASLDSQRASQLLQLAPNFG-QTLITST--QPLYTLPENSKS 349 Query: 365 MRISN 369 + I N Sbjct: 350 LHIKN 354 >gi|220915126|ref|YP_002490430.1| DNA replication and repair protein RecF [Anaeromyxobacter dehalogenans 2CP-1] gi|254790458|sp|B8J6Y3|RECF_ANAD2 RecName: Full=DNA replication and repair protein recF gi|219952980|gb|ACL63364.1| DNA replication and repair protein RecF [Anaeromyxobacter dehalogenans 2CP-1] Length = 372 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 161/370 (43%), Gaps = 9/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L++ +FRN A++ L + T+ +G+NG GKTN+LEAI FL+ + R A++ Sbjct: 1 MKLLSLHVQDFRNLAAVELAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + EG G+ +++++ + + R +D+ + L Sbjct: 61 VRFGAEQG-AVAGDFEGPGGVRRVAVQVAAGGRTATLDGKALGSGAR-LDDYFEGLASVC 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + RRRFLDR F P ++ R +R RN L G + + Sbjct: 119 FSPDDLLLVKAGPDGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRAGPAEVE--A 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFC 241 S + G +I + R +++ L+ + + + P L+ + Sbjct: 177 SFREPLVRAGARILVRRRDLVAELAPRLQAAFAEISGPAAPEAHLAYRAAGGVDVEHPEA 236 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + A L + D T GPH DL++ K + +GS G+Q+ +++ + + Sbjct: 237 EVAARLAHALEARLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLALKI 295 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360 A + G P+LLLD++S+ LD K L + + +Q F+T TD+ + + + Sbjct: 296 AEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTSTDRRLIEPAAGP 355 Query: 361 TAKFMRISNH 370 F + + Sbjct: 356 DTAFFEVRSG 365 >gi|319954276|ref|YP_004165543.1| DNA replication and repair protein recf [Cellulophaga algicola DSM 14237] gi|319422936|gb|ADV50045.1| DNA replication and repair protein recF [Cellulophaga algicola DSM 14237] Length = 361 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 163/372 (43%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N++S FD++ FVG NG+GKTNIL+AI LS G+ + Sbjct: 1 MFLKKLSLINYKNFSSENFDFDSKINCFVGQNGIGKTNILDAIYHLSFGKSYFNPIATQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G FF E ++ I L+ + ++ N + + L + Sbjct: 61 IKHGED-FFVIEGNFEKLDREEKIVCSLKKGMKK---IIKKNGKAYDKLSDHIGFLPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + PS + + S RR+F+D ++ D + + ++ + +++ RN LL FD Sbjct: 117 ISPSDRDLITEGSDTRRKFIDGVISQSDKDYLQTLLKYNKILSQRNSLLKYFAVNHTFDK 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + S Q+ G I RV + + E Q + + ++SL Sbjct: 177 TNLSVYNEQLTTYGTVIFNKRVAFLETFIPIFKEQYQVISGGNEEVSLIYDSKILETNLL 236 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L + D + T +G H+ DL D + I GS G+QK L+ + Sbjct: 237 ELL--------EKNIEKDRAIQYTSVGIHKDDLNFDLGEHPIK-KFGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVF 355 LA I + PILLLD+I LDE++ + + +V D Q+F++ T ++V Sbjct: 288 LAQFHFIKEQSSTTPILLLDDIFDKLDENRVSHIISLVNDENFGQLFISDTHADRTENVI 347 Query: 356 DSLNETAKFMRI 367 +++++ K ++ Sbjct: 348 KNIHQSYKMFKL 359 >gi|51316249|sp|Q6YI30|RECF_SODGL RecName: Full=DNA replication and repair protein recF gi|37359208|gb|AAN73890.1| DNA recombinase F [Sodalis glossinidius] Length = 364 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 148/370 (40%), Gaps = 14/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L A VG NG GKT++LEAI L GR FR V Sbjct: 1 MALSRLMIRDFRNISVADLSLAADFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQSGRV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R P F R+E G S+ L R+ ++I+ V EL + L + Sbjct: 61 IRHEQPEF-VLHGRIEAGNVDARATSVGLS-RNRLGDSTVRIDGSDGHKVAELAQLLPMQ 118 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + +G RR F+D F +P + RL++ RN L + Sbjct: 119 LITPEGFTLLNGGPKYRRAFMDWGCFHNEPGFFTAWSNLRRLLKQRNAALRQ-VSRYQQL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ L +I+ R + +A + + + P +L + + Sbjct: 178 RVWDQELIPLANRISEWRADY-SAAIAADITATCAQFLPEFRLDFSFQRGWDKES----- 231 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ + L + D T GPH++D + + S G+ K+++ + LA Sbjct: 232 --DFGELLERQFERDRALTYTASGPHKADFRIRAEGVPVEDIL-SRGQLKLLMCALRLAQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETA 362 +++ G + L+D+ ++ LD +R L + +Q+F++ + +E Sbjct: 289 GEFLTHRNGRRCLYLIDDFASELDTGRRRLLAERLKATHAQVFVSAVSADQIRDIPDEKG 348 Query: 363 KFMRISNHQA 372 K ++ + Sbjct: 349 KMFKVEQGKI 358 >gi|309807875|ref|ZP_07701807.1| putative recombination protein F [Lactobacillus iners LactinV 01V1-a] gi|308168977|gb|EFO71063.1| putative recombination protein F [Lactobacillus iners LactinV 01V1-a] Length = 347 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 74/341 (21%), Positives = 144/341 (42%), Gaps = 13/341 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ Sbjct: 1 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A + G +I L+ + IN + + + + Sbjct: 61 IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237 + + + Q+A L ++ RV ++ L + + L + F + Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQKEILDIEYKASFPEFDEK 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S + ++ + + TL+GPHR DL V + +K + S G+Q+ +++ Sbjct: 236 DSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 I LA L+ PILLLD++ + LD ++ I+ Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKIYLIIL 335 >gi|258650275|ref|YP_003199431.1| DNA replication and repair protein RecF [Nakamurella multipartita DSM 44233] gi|258553500|gb|ACV76442.1| DNA replication and repair protein RecF [Nakamurella multipartita DSM 44233] Length = 380 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 83/363 (22%), Positives = 146/363 (40%), Gaps = 24/363 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR++ ++ + + VG NG GKTN++EA+ +L+ R A+ A + Sbjct: 1 MYVRHLALTDFRSWPAVDVPLQPGVNVLVGRNGTGKTNLMEALGYLATLGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G A V G ++ +++E DR +IN + +L LR Sbjct: 61 VRSGCTRSILRAAVVSGD---RELLLEMEIARDRRN-TARINRAPLTRPRDLLGVLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G ERRRFLD ++ PR D++R+++ RN LL D Sbjct: 117 FAPEDLALVRGDPTERRRFLDEVLMMRAPRLAGVKADYDRVLKQRNALLKTAGAARRTGD 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S + + + G ++ AR+ ++ L + + L Sbjct: 177 LSTLDAWDEHLVAAGAELIHARLALVAQLRPPVTAAYADVAGADQVVDLVYRSTVPLGPD 236 Query: 240 FCALKEEYA------------KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 + A +L R + L+GPHR DL + + Sbjct: 237 PASAAGTIAVPDRAALAEAMLAELGRMRSKELERGICLVGPHRDDLEL-LLGTDPAKGYA 295 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + LA L+ + G P+L+LD++ A LD +R L +V Q+ + Sbjct: 296 SHGESWSFALALRLASFSLL-RSDGVDPVLILDDVFAELDAGRRGRLAELVAGAE-QVLI 353 Query: 348 TGT 350 T Sbjct: 354 TAA 356 >gi|298481402|ref|ZP_06999594.1| RecF protein [Bacteroides sp. D22] gi|295086818|emb|CBK68341.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens XB1A] gi|298272266|gb|EFI13835.1| RecF protein [Bacteroides sp. D22] Length = 372 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G +I ++ R + + N + L + Sbjct: 61 IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E M++ G + R I + + + + L+ + Sbjct: 177 FLVWEEMMSQAGEIVFRKREAFIREFIPIFQSFYSFISQDKEAVGLSYESHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L R+ D + +L G H+ +L + + I GS G+ K LV + LA Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRGHLDRILHK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ Sbjct: 348 VGSDYKIFRVEEGTI 362 >gi|315022216|gb|EFT35244.1| DNA replication and repair protein recF [Riemerella anatipestifer RA-YM] gi|325336656|gb|ADZ12930.1| Recombinational DNA repair ATPase (RecF pathway) [Riemerella anatipestifer RA-GD] Length = 380 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 163/373 (43%), Gaps = 22/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L ++ F+N+ F ++ FVG+NGVGKTNIL+A+ +LS G+ F S + Sbjct: 21 MIIKKLYLTNFKNHQERVFDFSSEINSFVGNNGVGKTNILDALHYLSVGKSFLGNSDVNN 80 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G FF+ A V+ E + I + + + ++ ND + + L Sbjct: 81 ILTGED-FFTLEAVVDDGEKETILKI---IQSKDAKKLVKKNDKSYARLSDHIGFLPSVM 136 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180 + P + S RRRFLD M+ +D + ++ +++ ++ RN LL YFD Sbjct: 137 ISPYDANLISDSGESRRRFLDAMISQVDAEYLHSIMQYQKALKQRNALLKSFAKNRYFDK 196 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + + I R I L + + + ++ + D + Sbjct: 197 DSLEIYDEPLCQYAGVIFEKRSLFITQLLPTFLHFYNMISNGKEEVDIVYQSDLE----- 251 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ A+ L + D + T G H+ +L + + GS G+QK L+ + Sbjct: 252 ---EQTMAEVLSQNVEKDRVLTYTSKGIHKDELRFEMSG-DLIKKIGSQGQQKSFLIALK 307 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS----VF 355 LA I TG P+LLLD+I LD+ + L +V + QIF+T T K V Sbjct: 308 LAQINRIKEITGKTPLLLLDDIFDKLDDRRVAQLIELVNKEHFGQIFITDTHKERTEAVV 367 Query: 356 DSLNETAKFMRIS 368 ++NE ++ I+ Sbjct: 368 KNINEESRIFEIT 380 >gi|300780156|ref|ZP_07090012.1| recombination protein F [Corynebacterium genitalium ATCC 33030] gi|300534266|gb|EFK55325.1| recombination protein F [Corynebacterium genitalium ATCC 33030] Length = 392 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 99/381 (25%), Positives = 165/381 (43%), Gaps = 32/381 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FR++ L L + T+F G NG GKTNI+EA + + R + + Sbjct: 1 MYLRELDLRDFRSWPELNLALEPGVTVFSGRNGHGKTNIVEAAIYTATLASHRVSQDQPL 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + + V G E + IK+ R QIN ++ E+ LR Sbjct: 61 IRTGANNARISATTVNAGRELTTHLLIKV-----REQNQAQINRTRLKSPREMLGVLRTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL-------LTEG 176 P + +G ERRRFLD + PR D+++++R RN L L G Sbjct: 116 VFAPEDLALVTGEPAERRRFLDTLASIRTPRFGGAKADYDKVLRQRNALLRSSNMALRRG 175 Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228 Y D S + +AQ+A G ++ R +I+ LS + + Sbjct: 176 YNDDSGAAALSTLDAWDAQLAAFGAQVVAGRRMLIDVLSDPVHNSYSSVAPESRPAAIEY 235 Query: 229 TGFLD-------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 + LD G+ L+ + ++L R+ + TL+GPHR DL++ D+ Sbjct: 236 SSTLDKAVAELAGEPSNDPAILEAAFLQELARRRRDEIDRGTTLVGPHRDDLLLTLGDQP 295 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + LA L+S G P+L+LD++ A LD +R L V Sbjct: 296 AK-GYASHGETWSFALALHLAEYALLSE-DGVDPVLILDDVFAELDAKRRERLV-AVAQQ 352 Query: 342 GSQIFMT-GTDKSVFDSLNET 361 Q+ +T + D+L+E Sbjct: 353 AEQVLITAAVGDDLPDNLDEH 373 >gi|116668572|ref|YP_829505.1| recombination protein F [Arthrobacter sp. FB24] gi|166220698|sp|A0JQT5|RECF_ARTS2 RecName: Full=DNA replication and repair protein recF gi|116608681|gb|ABK01405.1| DNA replication and repair protein RecF [Arthrobacter sp. FB24] Length = 401 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 165/392 (42%), Gaps = 41/392 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++++FR+YA + L + T+ VG NG+GKTN++EAI +L+ R +S A + Sbjct: 1 MYLEKLSLTDFRSYAQVDLTLEPGVTVLVGYNGIGKTNLMEAIGYLATLSSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V G + ++LE R+ R +R D L + Sbjct: 61 LRFGTERALIRAKLVRGGQSTV---LELEINGSRANRGRINRSNPVRARDIL-GICQTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G RRRFLD ++ ++ PRH D++R+++ RN LL G Sbjct: 117 FAPEDLALVKGDPSNRRRFLDELLVSLMPRHSATRTDYDRVLKQRNALLKSGRSGKFTAG 176 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKF 236 + + MA G ++ AR+E++ + + + L G Sbjct: 177 HEATLDVWDQHMARAGAELLYARLELVERIRPHLKAAYAQLTDGSKEADAIYRSTLQGIL 236 Query: 237 DQ-----------------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 D S L + Y + R+ + +L+GPHR D+ Sbjct: 237 DDDGAGAGYAAEPAAVERVEDLRALSVEELTQRYVQAFAASRRKELERGISLVGPHRDDV 296 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDEDK 330 + +A + S GE + + + LA ++ + T G APIL+LD++ A LD + Sbjct: 297 EL-ILGEAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELDVQR 355 Query: 331 RNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361 R L IV+ Q+ +T D + D L Sbjct: 356 RRKLAAIVSGAE-QVLVTAAVDADIPDELAGR 386 >gi|315500822|ref|YP_004079709.1| DNA replication and repair protein recf [Micromonospora sp. L5] gi|315407441|gb|ADU05558.1| DNA replication and repair protein RecF [Micromonospora sp. L5] Length = 376 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 164/371 (44%), Gaps = 21/371 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + + + + VG NGVGKTN++EA+ +++ R A+ A + Sbjct: 1 MYVRRLELVDFRSYERVGVDLEPGPNVLVGANGVGKTNLVEALGYVATLDSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ S A V ++ ++LE ++ R ++ R ++ LR+ Sbjct: 61 VRMGAASAVIRCAVVHEG---RELLVELEIVPGKANRA-RLGRSPARRARDVLGALRLVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRR+LD ++ PR+ D+ER+++ RN LL Y Sbjct: 117 FAPEDLELVRGDPAERRRYLDDLLVTRQPRYAGVRADYERVVKQRNALLRTSYLARKTGG 176 Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 D S + +A +A+ G + R+E++ AL+ + + + Sbjct: 177 TRGGDLSTLAVWDAHLAQHGADLLAGRLELVAALTPHVAKAYDAVAAGRGAAGIAYRPSV 236 Query: 235 KFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + + AL E A L R + TL+GPHR DL + + S GE Sbjct: 237 ELPEPGADRAALAEALAAALTANRAAEIERGTTLVGPHRDDLALTLGPLPAK-GYASHGE 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350 + + LA L+ G P+L+LD++ A LD +R L +V SQ+ +T Sbjct: 296 SWSYALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRERLAELVGGA-SQLLVTCAV 353 Query: 351 DKSVFDSLNET 361 D V +L T Sbjct: 354 DDDVPATLRGT 364 >gi|256821231|ref|YP_003145194.1| DNA replication and repair protein RecF [Kangiella koreensis DSM 16069] gi|256794770|gb|ACV25426.1| DNA replication and repair protein RecF [Kangiella koreensis DSM 16069] Length = 369 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 95/376 (25%), Positives = 162/376 (43%), Gaps = 20/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L+I FRN RL F Q I G+N GKT+ILE++ L GR FR + ++ + Sbjct: 1 MHIQSLSIQNFRNLQPSRLHFSPQLNIIYGNNAAGKTSILESLFILGHGRSFRTSRHSKL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 SF + F+ + + ++ +D +VR +N + + +L + I Sbjct: 61 INYEQDSF-TLFSELYSHNVQQRLGVQRFRNNDVNVR---LNQEPLAKLSDLVSLIPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P + + RR+ LD VF ++ +R +R++ RN+LL G Sbjct: 117 LAPEHYELLTKGPSGRRKLLDWGVFHVEHSFLKRWQACQRIILQRNKLLK-GSLSYKDLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++Q+ L ++N R + ++LS E + + P ++LSL + + L Sbjct: 176 AWDSQLIPLSDQVNQYRQDYCDSLSPYFHE-IASQFLPDVQLSLEFYKGWQGKDLESLLV 234 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+Y K D T ++DL + K + + S G+QK+V + LA Sbjct: 235 EQYLK--------DKKLGYTQSTIQKADLKI-LSGKRLAADYLSRGQQKLVTTALKLAQL 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSL---N 359 RL P+ LLD+I A LDE+ + L + QIF+T SL Sbjct: 286 RLAQERGQQYPVFLLDDIGAELDENHQKLLLNFLAKQPEKQQIFITCVHLDPLKSLINRY 345 Query: 360 ETAKFMRISNHQALCI 375 A+ + + I Sbjct: 346 NNARLFHVEHGAVSII 361 >gi|269118645|ref|YP_003306822.1| DNA replication and repair protein RecF [Sebaldella termitidis ATCC 33386] gi|268612523|gb|ACZ06891.1| DNA replication and repair protein RecF [Sebaldella termitidis ATCC 33386] Length = 362 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 81/372 (21%), Positives = 164/372 (44%), Gaps = 14/372 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L+++ FR + ++ FD + G NG GKT+++EA+ FL+ G+ FR ++ Sbjct: 1 MKLKQLSLNNFRCLENKKIEFDPDFNLIYGKNGQGKTSLIEAVYFLATGKSFRTKKVKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 T + + G +I ++ +D+ + N + L + Sbjct: 61 TSYDKIRTIVYGSFESKLSGK---TIAIDFNNDKKEYYVDKNKT---KYIDYVGILNVIS 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P I G RR F + + + + ++DFE++++ RN+L+ E + Sbjct: 115 FIPEDIEIIIGNPSVRRGFFNYEISQTKNIYLKTLVDFEKILKTRNKLIKERKTNKELYH 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242 + E G KI + R E + +S L+ +K ++L F+D + Sbjct: 175 IYNEKFIEEGSKIILMRKEYVKNISRLLNLNYRKLFDANSELRLKYDSFIDNIDKMTLEE 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +KE++ ++ + TL+GP + D + + K S GE+K ++ + +A Sbjct: 235 IKEKFREETVKKHDREKRYGYTLVGPQKEDFVFELNGKNAKA-FSSQGEKKSIIFSLKIA 293 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++ P+ L+D+IS++ DE ++N++ + Q F+T T+K L+ Sbjct: 294 EIDMLIKEKNEIPVFLIDDISSYFDEIRKNSILNYFKNKNIQCFITSTEK-----LDIEG 348 Query: 363 KFMRISNHQALC 374 K + I + L Sbjct: 349 KKIYIDKGRILS 360 >gi|85057981|ref|YP_453683.1| recombination protein F [Sodalis glossinidius str. 'morsitans'] gi|97180974|sp|Q2NX47|RECF_SODGM RecName: Full=DNA replication and repair protein recF gi|84778501|dbj|BAE73278.1| DNA metabolism protein RecF [Sodalis glossinidius str. 'morsitans'] Length = 364 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 148/370 (40%), Gaps = 14/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L A VG NG GKT++LEAI L GR FR V Sbjct: 1 MALSRLMIRDFRNISVADLSLAADFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQSGRV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R P F R+E G S+ L R+ ++I+ V EL + L + Sbjct: 61 IRHEQPEF-VLHGRIEAGNVDARATSVGLS-RNRLGDSTVRIDGSDGHKVAELAQLLPMQ 118 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + +G RR F+D F +P + RL++ RN L + Sbjct: 119 LITPEGFTLLNGGPKYRRAFMDWGCFHNEPAFFTAWSNLRRLLKQRNAALRQ-VSRYQQL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ L +I+ R + +A + + + P +L + + Sbjct: 178 RVWDQELIPLANRISEWRADY-SAAIAADITATCAQFLPEFRLDFSFQRGWDKES----- 231 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ + L + D T GPH++D + + S G+ K+++ + LA Sbjct: 232 --DFGELLERQFERDRALTYTASGPHKADFRIRAEGVPVEDIL-SRGQLKLLMCALRLAQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETA 362 +++ G + L+D+ ++ LD +R L + +Q+F++ + +E Sbjct: 289 GEFLTHRNGRRCLYLIDDFASELDTGRRRLLAERLKATHAQVFVSAVSADQIRDIPDEKG 348 Query: 363 KFMRISNHQA 372 K ++ + Sbjct: 349 KMFKVEQGKI 358 >gi|323357954|ref|YP_004224350.1| recombinational DNA repair ATPase [Microbacterium testaceum StLB037] gi|323274325|dbj|BAJ74470.1| recombinational DNA repair ATPase [Microbacterium testaceum StLB037] Length = 383 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 96/388 (24%), Positives = 175/388 (45%), Gaps = 25/388 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRNYA + + +FVG NG GKTN++EA+++L+ R +S A + Sbjct: 1 MIVEQLGLRDFRNYAEVDVSLSTGANVFVGRNGQGKTNLVEAVAYLATLGSHRVSSDAPM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ + R G + ++L+ S R ++N V +R EL ++ ++ Sbjct: 61 VKDGTDAAI---VRARLAHGERSVLLELQLNRQGSNRA-RVNGVNVRTA-ELPRYAQVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P +I G RRRF D+++ PR + D++R++R R LL Sbjct: 116 FAPEDLQIVRGDPSARRRFADQLIVQRTPRMAAVVADYDRVLRQRTALLKSARARGVRGD 175 Query: 182 ---WCSSIEAQMAELGVKINIARVEMINALSSLI------MEYVQKENFPHIKLSLTGFL 232 + ++ LG ++ AR+ + + LS + + E LS+ G Sbjct: 176 ALGTLDVWDDKLVTLGTELIEARLALASDLSEPVASAYAAIAGADHEPRLEWALSVGGGD 235 Query: 233 DGKFDQSFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + D + A L E++ L R + TL+GPHR DL++ + + S Sbjct: 236 PEEGDAATSAPGGPLAEQFRAALAARRSAELERGLTLVGPHRDDLVLRVRGLPVK-GYAS 294 Query: 289 TGEQKVVLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 GE V + + LA A ++ + P+L+LD++ A LD +R L +V I Sbjct: 295 HGESWSVALALRLASAEILRAESRLGDPVLILDDVFAELDAGRRARLAELVGGYEQVIVT 354 Query: 348 TGTDKSVFDSLNETAKFMRISNHQALCI 375 + ++ V D+L A +R+ Q + + Sbjct: 355 SAVEEDVPDAL--RAHVVRVEAGQIVTV 380 >gi|103487192|ref|YP_616753.1| recombination protein F [Sphingopyxis alaskensis RB2256] gi|98977269|gb|ABF53420.1| DNA replication and repair protein RecF [Sphingopyxis alaskensis RB2256] Length = 369 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 200/370 (54%), Gaps = 6/370 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FRN+A L GDNG GKTNILEAIS L+PGRG RRA +D+ Sbjct: 1 MTLVRLSLTDFRNHAGADLAAAPGLVALHGDNGAGKTNILEAISLLAPGRGLRRAPLSDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 R G+ F+ FA V EGL +++ + R ++IN L + L I Sbjct: 61 VRDGAHGGFAVFAEVAAAEGLPPVALGTGIEPAQPRRRIVRINGAPA-AATALGEWLAIL 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182 WL P+MDR+F + RRRFLDR+V A+DPRH + +E +R R +LL + D +W Sbjct: 120 WLTPAMDRLFVETAGNRRRFLDRLVLALDPRHAQHGNRYEAALRARGKLLADLAAADETW 179 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 +S+EAQ+AE G ++ AR++ + ALS E + + P + LT ++S Sbjct: 180 LTSLEAQLAEHGAAMDAARLDTLAALS---AELAGQPDAPFARPLLTLVDSEGAERSAPH 236 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E R++D+ + R GPHR DL+ + A STGEQK +L+ + LA Sbjct: 237 SAEALKALFAARRRIDAAAGRATAGPHRDDLVAVHAVTGRAAARCSTGEQKAMLLSLVLA 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 H ++ G P+LLLDE++AHLD +R AL+ + G Q ++TGT+ ++FD++ Sbjct: 297 HGDCVARRRGQRPVLLLDEVAAHLDPLRRAALYERLAGQGGQAWLTGTEAALFDAMPGPV 356 Query: 363 KFMRISNHQA 372 RI + Sbjct: 357 TRYRIIGGRI 366 >gi|237715558|ref|ZP_04546039.1| DNA replication and repair protein RecF [Bacteroides sp. D1] gi|262408567|ref|ZP_06085113.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229444267|gb|EEO50058.1| DNA replication and repair protein RecF [Bacteroides sp. D1] gi|262353432|gb|EEZ02526.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 372 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K ++I ++N + L F A+ F G NG+GKTN+L+A+ FLS + + Sbjct: 1 MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R FF E +G +I ++ R + + N + L + Sbjct: 61 IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182 + P+ + +G S ERRRF+D ++ D + +I + + + RN LL + Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALVQRNTLLKSEFPVEEEL 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E M++ G + R I + + + + L+ + Sbjct: 177 FLVWEEMMSQAGEIVFRKREAFIREFIPIFQSFYSFISQDKEAVGLSYESHARD------ 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L R+ D + +L G H+ +L + + I GS G+ K LV + LA Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL--- 358 + T P+LLLD+I LD + + ++V D QIF+T T++ D + Sbjct: 288 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRGHLDRILHK 347 Query: 359 -NETAKFMRISNHQA 372 K R+ Sbjct: 348 VGSDYKIFRVEEGTI 362 >gi|119471660|ref|ZP_01614045.1| gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction [Alteromonadales bacterium TW-7] gi|119445439|gb|EAW26726.1| gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction [Alteromonadales bacterium TW-7] Length = 364 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 160/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRN +L L I G+NG GKT++LEAI +LS G+ FR + + Sbjct: 1 MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTPKHKSI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 F + G + + D+SI + R L+I R + EL + + + Sbjct: 61 IAHQQEQFV-----IHGRKMVHDLSIPIGISKTRLGETNLKIQGKASRKISELAQLMPVQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SW 182 + P +F G ERR+FLD +F ++ F ++++ RN LL + Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFYLWQSFNKVLKQRNALLKSKPKNYFDQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + L +IN R+ I+ + + E L+L L+ F+ + Sbjct: 176 IKFWDKEFVRLAEEINKLRLAYISRFKQQFFDKMCSE------LTLIRDLEMTFNAGWKE 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E A L + D+ T GPH++D ++ S G+ K++L + + Sbjct: 230 -NESLADALEQNFERDARQGFTSKGPHKADFSFSVAGNSVENTF-SRGQLKLLLYALKVT 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ----IFMTGTDKSVFDSL 358 LI + T ILL+D++ + L ED + + ++++ SQ ++ + +V + + Sbjct: 288 QNSLIESETDKQSILLIDDLPSELGEDTKEKVGQLLSHCSSQIFISSILSESISAVVEPM 347 Query: 359 NETAKFMRISNHQAL 373 K + + + Sbjct: 348 QRELKMFHVKHGNLI 362 >gi|194363781|ref|YP_002026391.1| recombination protein F [Stenotrophomonas maltophilia R551-3] gi|226737839|sp|B4SR07|RECF_STRM5 RecName: Full=DNA replication and repair protein recF gi|194346585|gb|ACF49708.1| DNA replication and repair protein RecF [Stenotrophomonas maltophilia R551-3] Length = 364 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 153/372 (41%), Gaps = 10/372 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ L + + R + ++ L + GDNG GKT+ILEA+ ++ GR FR + Sbjct: 1 MQIRRLALHQLRRFNAVELSPQPGLNLLTGDNGAGKTSILEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + E K R +++ + + L L + Sbjct: 61 VRQGQEALEIFVEWDEQRASHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQGGPSR-MLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R + L + + E P + + + + + Sbjct: 180 TWDHELAEAGEPLTSRRQHYLERLQQRTVA-LAAELAPQLGIQ-----AMELSPGWRRHE 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T +GPHR+D VD+ + A S G+ K+ + LA A Sbjct: 234 LPLADALLLARERDRQAGYTSVGPHRADWSVDFHNIPGRDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 + G P++ LD++++ LD + + + +QIF+T T+ + L A+ Sbjct: 293 EDYAEQRGEWPVIALDDLASELDRTHQARVLERLLGGPAQIFVTATETPAALQELTHIAR 352 Query: 364 FMRISNHQALCI 375 + + Q + + Sbjct: 353 -FHVEHAQIVAV 363 >gi|126724508|ref|ZP_01740351.1| recombination protein F [Rhodobacterales bacterium HTCC2150] gi|126705672|gb|EBA04762.1| recombination protein F [Rhodobacterales bacterium HTCC2150] Length = 371 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 199/365 (54%), Gaps = 11/365 (3%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 + +S FR++ L D + G NG GKTNILEA+S LSPGRG RRA+ D++R Sbjct: 11 IALSHFRSHKLLNQPLDGRPVAIFGPNGAGKTNILEAVSLLSPGRGLRRATADDLSRKPE 70 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 + A + +I+++ E R V D L + +I WLVP+M Sbjct: 71 ALGWKVSATLNSPHRTHEIAMRAEAGASRVVTI----DEKTAPQVALGRIAQILWLVPAM 126 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 DR++ + ERRRFLDR+ + P H ++ +++ MR RNRLL + D+ W ++E Q Sbjct: 127 DRLWIEGAGERRRFLDRITLSFQPNHAEAVLSYDKAMRERNRLLKDHVRDAHWYLALEGQ 186 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 MA+ G +I+ R++ ++ L+ + K FP L+L + +++ + + Sbjct: 187 MAKSGAEIHRNRIDALSLLAK--AQSNAKTAFPAADLTL-----IEGEENIGFDEASLRE 239 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 L + R D + RTL+GPHRSD+ + K I STGEQK +L+ + L++AR ++ Sbjct: 240 VLANNRPNDLRAGRTLVGPHRSDVAALFAAKGIDARQCSTGEQKALLISLILSNARALAT 299 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 PI+LLDE++AHLD+++R AL+ +T IG+Q FMTGT +F + A+ + +S Sbjct: 300 LNDAPPIILLDEVAAHLDDNRRAALYDEITAIGAQAFMTGTGVELFAEMKGRAQALYVSE 359 Query: 370 HQALC 374 L Sbjct: 360 SGGLS 364 >gi|330806660|ref|YP_004351122.1| DNA replication and repair protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374768|gb|AEA66118.1| DNA replication and repair protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 357 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 150/363 (41%), Gaps = 17/363 (4%) Query: 16 RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFST 75 RN + + I G NG GKT++LEA+ L R FR V + + + Sbjct: 2 RNLHPVTFSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLLPVIQYDQLAC-TV 60 Query: 76 FARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +VE EG + I +RD + ++I+ R +L + L + + P R+ Sbjct: 61 FGQVELAEGGHSALGI---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPDSFRLLE 117 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 G RR+FLD VF ++PR ++ +R RN L G D+ + + ++ + Sbjct: 118 GAPKIRRQFLDWGVFHVEPRFMTTWQRLQKALRQRNSWLRHGTLDAVSQAVWDRELCQAS 177 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 +I+ R I AL + + + E L+L+ + D+ + L Sbjct: 178 AEIDEYRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKDRELSTV-------LAGS 229 Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314 + D T GP R+DL + S G+QK+V+ + +A L+S Sbjct: 230 LQRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQGHLVSQARRGQ 288 Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNETAKFMRISNHQ 371 I L+D++ + LDE R AL R++ D+ Q+F+T D + + + Sbjct: 289 CIYLVDDLPSELDEAHRRALCRLLEDLRCQVFITCVDHELLREGWQTETPVALFHVEQGR 348 Query: 372 ALC 374 Sbjct: 349 ITQ 351 >gi|254447440|ref|ZP_05060906.1| DNA replication, recombinaison and repair protein [gamma proteobacterium HTCC5015] gi|198262783|gb|EDY87062.1| DNA replication, recombinaison and repair protein [gamma proteobacterium HTCC5015] Length = 357 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 164/373 (43%), Gaps = 19/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I R A++ + + G N GKT++LEAI LS GR FR + + + Sbjct: 1 MSLQQLTIQNIRRLATVEMALSPSLNVIYGLNASGKTSLLEAIHLLSTGRSFRTSRFTEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A V +G I ++ R+ +++ ++ V EL + L Sbjct: 61 LSHEAKQA-VVAATVHQPDGACRIGVQRSARE----WLMKVGGERVQRVSELARWLPTQV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR+FL+ VF ++ R + ++R ++ RN L + D+ Sbjct: 116 IHPDSHFLLTAGPSYRRQFLNWGVFHVEHRFYPAWVRYQRALKQRNSALRQK--DARMDG 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +++++ I+ R E + L+ ++ +V ++ + +Q+ + Sbjct: 174 AWDSELSRAASFIHELREEYVADLNRILPRFVAAM-MGQQEVQMVYQPGWDSEQTLATV- 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L D R+ D T GPHR+DL S G+QK+++ + LA A Sbjct: 232 ------LRDYREKDRYRGHTQQGPHRADLSFKVNGYKAQAEI-SRGQQKMLVSALRLAQA 284 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS--VFDSLNETA 362 L +G + ++++D++ A LDE RNAL ++ D+ SQ+ +T + ++ E Sbjct: 285 ALYQEQSGQSCLIMMDDLPAELDEKHRNALMGLLADMQSQVLVTCVEAEQIPLNAWKE-Y 343 Query: 363 KFMRISNHQALCI 375 K + + + + Sbjct: 344 KLFHVEHGKVQAV 356 >gi|302864512|ref|YP_003833149.1| DNA replication and repair protein RecF [Micromonospora aurantiaca ATCC 27029] gi|302567371|gb|ADL43573.1| DNA replication and repair protein RecF [Micromonospora aurantiaca ATCC 27029] Length = 377 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 164/371 (44%), Gaps = 21/371 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + + + + VG NGVGKTN++EA+ +++ R A+ A + Sbjct: 1 MYVRRLELVDFRSYERVGVDLEPGPNVLVGANGVGKTNLVEALGYVATLDSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ S A V ++ ++LE ++ R ++ R ++ LR+ Sbjct: 61 VRMGAASAVIRCAVVHEG---RELLVELEIVPGKANRA-RLGRSPARRARDVLGALRLVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRR+LD ++ PR+ D+ER+++ RN LL Y Sbjct: 117 FAPEDLELVRGDPAERRRYLDDLLVTRQPRYAGVRADYERVVKQRNALLRTSYLARKTGG 176 Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 D S + +A +A+ G + R+E++ AL+ + + + Sbjct: 177 TRGGDLSTLAVWDAHLAQHGADLLAGRLELVAALTPHVAKAYDAVAAGRGAAGIAYRPSV 236 Query: 235 KFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + + AL E A L R + TL+GPHR DL + + S GE Sbjct: 237 ELPEPGADRAALAEALAAALTANRAAEIERGTTLVGPHRDDLALTLGPLPAK-GYASHGE 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350 + + LA L+ G P+L+LD++ A LD +R L +V SQ+ +T Sbjct: 296 SWSYALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRERLAELVGGA-SQLLVTCAV 353 Query: 351 DKSVFDSLNET 361 D V +L T Sbjct: 354 DDDVPATLRGT 364 >gi|78221231|ref|YP_382978.1| recombination protein F [Geobacter metallireducens GS-15] gi|97180732|sp|Q39ZS1|RECF_GEOMG RecName: Full=DNA replication and repair protein recF gi|78192486|gb|ABB30253.1| DNA replication and repair protein RecF [Geobacter metallireducens GS-15] Length = 365 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 155/374 (41%), Gaps = 12/374 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + IS FRN A+ + FD + + G NG GKT++LEAI L + FR A D+ Sbjct: 1 MFVTKIQISSFRNIAAAEIRFDRRFNVLHGANGQGKTSVLEAIYLLGTMKSFRLAKTPDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +P A + G + ++ + R +++ + + + ++ Sbjct: 61 VSWNTP-----HALLRGWAERDGVGREIALYLGKEGRKARVDQKPVTRLADFFGNVNAVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + RRR+LDR +F+ D + ++ RL++ RN LL G + Sbjct: 116 FSPEEIAMARSGPDLRRRYLDRAIFSGDLGYLLLHHEYHRLLKQRNALLKRGSREG--LD 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 Q+AE G ++ + R+ + + L+ + ++ + L Sbjct: 174 IWTGQLAEAGTRLMVKRMGYLAEIEPLVQRFYREIAGGEEEAGLAYRPHLTTPDLVSREG 233 Query: 245 EEYAKKLFDGRKMDS-MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + LF + + T++GPHR D+ + + HGS G+Q+ ++ + +A Sbjct: 234 TDALLALFGAHEAEELRRGTTVVGPHRDDVDF-VLNGRVIRTHGSQGQQRSFVLALKMAE 292 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 + P+LLLD+IS+ LD + L + + Q+F+T TD S L A Sbjct: 293 IEYLERLNDAPPVLLLDDISSELDPQRNANLMTFLREKRMQVFITTTDVSTL-RLAGIAT 351 Query: 364 F--MRISNHQALCI 375 +S + Sbjct: 352 HASFHVSRGTVTPL 365 >gi|256823909|ref|YP_003147869.1| DNA replication and repair protein RecF [Kytococcus sedentarius DSM 20547] gi|256687302|gb|ACV05104.1| DNA replication and repair protein RecF [Kytococcus sedentarius DSM 20547] Length = 390 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 159/387 (41%), Gaps = 30/387 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + +FR+Y L A T+FVG NG GKTN++EA +L+ R +S + Sbjct: 1 MRLRHLAVRDFRSYEQADLDLPAGVTVFVGRNGQGKTNLVEAAGYLATLGSHRVSSDQPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ A + ++L+ R+ R Q+ + ++ LR Sbjct: 61 VRVGAEHAIIRGAVDHDG---RETVLELQINPGRANRA-QLGRSPVPRARDVLGTLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G RR FLD ++ A PR D+ + ++ RN LL + Sbjct: 117 FAPEDLALVKGDPAGRRAFLDALLVARQPRWAGVQADYAQALKQRNALLRDVRASRSAPS 176 Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---------------F 221 + + + +A G + AR+ ++ L + + ++ + Sbjct: 177 SSTVAMLEAWDEHLAVGGASLLYARLRLVQDLRRFVEKAYRQVSEAASEAGLTYRWSLVG 236 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 +L+G G L ++ L R+ + TL+GPHR DL + Sbjct: 237 DEADAALSGLTGGGPVPERDDLARLFSASLGAMRQRELERGITLVGPHRDDLDLTLGPVP 296 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + + LA L+ G P+L+LD++ A LD +R L +V D Sbjct: 297 AK-GYASHGESWSLALSLRLAAFELLRTDLGTDPVLVLDDVFAELDTGRRERLAELVADA 355 Query: 342 GSQIFMT-GTDKSVFDSLNETAKFMRI 367 Q+ +T + V +L E A + + Sbjct: 356 E-QVLVTAAVETDVPQTLRERAHHVDV 381 >gi|307543592|ref|YP_003896071.1| recombination protein F [Halomonas elongata DSM 2581] gi|307215616|emb|CBV40886.1| recombination protein F [Halomonas elongata DSM 2581] Length = 371 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 18/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L RN +L L + +F+GDNG GKT++LE I L GR FR Sbjct: 1 MPLDRLAFQGLRNLQALELSPGPRINLFIGDNGTGKTSLLEGIHVLGMGRSFRTRQLRHA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + R+ G + I + R D +++ + V +L + L + Sbjct: 61 IAH-EEDGVTLHGRLSG---EPPLPIGVRRRRDSDELEMRLAGERVGRVSQLVETLPLQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P R+ G RR FLD VF + F R ++ RN LL G + Sbjct: 117 INPDAFRLLEGSPAGRREFLDWGVFHVKHDFLDAWKRFRRALKHRNALLRHGRMSDASMG 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCAL 243 + E ++A G +++ R I+A + E ++ P ++L D Sbjct: 177 AWERELAHWGARLDELRRAWIDAFLPVFQETLEGLIALPGLQLRYARGWD---------R 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K + A L R+ D T GP R+DL + + I S G+QK+V+ + LA Sbjct: 228 KRQLADVLEQSRETDRQMGFTQQGPQRADLGIRL-GRRPAIEILSRGQQKLVVSALKLAQ 286 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD---SLNE 360 RL+ TG + + L+D++ A LD + R + + Q F+T D + ++ Sbjct: 287 GRLLERLTGRSCVYLIDDLPAELDGEHRRVFCEWLAHMRCQAFITSVDPNALTGSWDVDT 346 Query: 361 TAKFMRISNHQA 372 + + +A Sbjct: 347 PVSMFHVKHTEA 358 >gi|325678551|ref|ZP_08158162.1| DNA replication and repair protein RecF [Ruminococcus albus 8] gi|324109770|gb|EGC03975.1| DNA replication and repair protein RecF [Ruminococcus albus 8] Length = 379 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 154/379 (40%), Gaps = 15/379 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+++ F+N + + + IF G N GKTN++EAI S R FR + Sbjct: 1 MFITELSVNGFKNLKGISIKPHEKINIFCGRNAQGKTNLIEAIWLCSGARSFRSTKDRRM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + R + +I+ + + + + + +N V ++ +L L Sbjct: 61 I-GDDEQVMNIGLRFKNSFREQEIAFAM-AKPNIKEKNVTLNGVKLKAPSKLFGGLNCVI 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P + G RR+F+D V I + +E L+ RN LL G Sbjct: 119 FTPEDLELSKGSPDNRRQFIDLSVAQIKNSYSAVTYKYEALIERRNLLLKNINYGKAGKD 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+A++G I++ R LS+ ++ + KL ++ + + Sbjct: 179 ELEMWDVQLAQMGAFISLHRYNYTKKLSAYAQMLYEEISGGSEKLDISYYSTVYDSEMLD 238 Query: 242 -------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 LK+ Y + L + D + T G HR DLI + + S G+ + Sbjct: 239 KATEYTGELKDRYFEVLKNNISDDLRAGFTQKGVHRDDLICKINGRPVR-EDASQGQHRS 297 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + L+ A ++++ P++LLD++ + LD ++ + + D+ Q+F+T D ++ Sbjct: 298 AALIMKLSQAYILNDEIDDFPVILLDDVLSELDPSRQRFVISKIHDM--QVFITCCDMNI 355 Query: 355 FDSLNETAKFMRISNHQAL 373 + K I Q + Sbjct: 356 PFDESSHGKIFNIEKGQII 374 >gi|307150124|ref|YP_003885508.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7822] gi|306980352|gb|ADN12233.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7822] Length = 384 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 174/387 (44%), Gaps = 25/387 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + FRNY R+ FD+Q TI VG+N GK+N+LEA+ L+ + R + D+ Sbjct: 1 MYLKTVQLRSFRNYREQRVNFDSQKTIIVGNNAQGKSNLLEAVELLATLKSHRVSRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ S A +E G A++++ L R + +N +R + L Sbjct: 61 VLEGAASG-QILAALERAYGQAELALILRISGR---RTVILNQEPLRRQMDFLGVLNAVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 + G RR ++D ++ ++P + + + ++++ RN LL Sbjct: 117 FSSLDLDLVRGAPDARRSWIDTLLIQLEPIYAHILSQYYQVLKQRNALLKKFRQREEDNL 176 Query: 175 -------EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 + D S + Q+AE G ++ R ++ L+ L ++ + L Sbjct: 177 NPEIIVEQLPSDISQLKLWDVQLAEAGSRVTRRRARVLERLTPLAQQWHSNISGKTEVLE 236 Query: 228 LTGFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 + + + + +K+ + +K+ R + T++GPHR D+ + + Sbjct: 237 IKYIPNVSWTEDDPLEVKQAFLEKIEKRRMAEQQLGTTVVGPHRDDIEF-IINHTPAKYY 295 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 GS G+Q+ +++ + LA +LI G P+LLLD++ A LD +++N L + D Q Sbjct: 296 GSQGQQRTLVLALKLAELQLIEEVVGEPPLLLLDDVLAELDPNRQNQLLEAIQD-RFQTL 354 Query: 347 MTGTDKSVFDS-LNETAKFMRISNHQA 372 +T T FDS ++++ + + + Sbjct: 355 ITTTHLHSFDSGWLKSSQILSVEAGEI 381 >gi|158334838|ref|YP_001516010.1| recombination protein F [Acaryochloris marina MBIC11017] gi|189039615|sp|B0CB57|RECF_ACAM1 RecName: Full=DNA replication and repair protein recF gi|158305079|gb|ABW26696.1| DNA replication and repair protein RecF [Acaryochloris marina MBIC11017] Length = 374 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 92/376 (24%), Positives = 174/376 (46%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FRNY + ++ F A TI VG N GK+N+LEA+ LS + R + D+ Sbjct: 1 MYLQQLHLIQFRNYVAQQVEFSAPKTILVGPNAQGKSNLLEAVELLSTLKSHRVSRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G S A ++ G D+S+ L R + +N IR + HL I Sbjct: 61 VKDG-ESLSQVTATLQRESGPLDLSLTLRANGR---RTVSVNSETIRRQLDFLGHLNIVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 + G ERR +LD ++ ++P + + ++++++ RN L Sbjct: 117 FSSLDMDLVRGGPGERRNWLDAVLVQLEPVYAHLLQQYQQVLKQRNAYLKHHRADDAPQL 176 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D Q+A G ++ R M+ L L + Q + +L + + +D Sbjct: 177 DPQQLVLWNQQLAASGSRVIQRRQRMLMRLVPLAGHWHQTISGHQEQLEILYTPNVSYDP 236 Query: 239 SFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 F L ++ +L + ++ + +L+GPHR ++ + + +GS G+Q+ +++ Sbjct: 237 QFPEQLYPQFLSQLEEKSMLEQLQGLSLVGPHRDEVTL-LINGTPARQYGSQGQQRTLVL 295 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA +LI G AP+LLLD++ A LD +++N L + Q +T T FD+ Sbjct: 296 ALKLAELKLIEEVVGEAPLLLLDDVLAELDLNRQNQLLDAI-QTRFQTLITTTHLGAFDA 354 Query: 358 -LNETAKFMRISNHQA 372 ++A+ + + Q Sbjct: 355 KWLDSAQILTVKAGQV 370 >gi|149912066|ref|ZP_01900657.1| recombination protein F [Moritella sp. PE36] gi|149804862|gb|EDM64899.1| recombination protein F [Moritella sp. PE36] Length = 361 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 12/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LN ++FRN + A I +GDNG GK+++LEAI +L GR FR + V Sbjct: 1 MGLVKLNFTDFRNIKQASMQPGAGINIILGDNGSGKSSVLEAIHYLGLGRSFRTHLTSRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G F + F++ + I+ + S L+I + EL L + Sbjct: 61 VQHGEKDF-TLFSQCQQRLNDDRITTIGLKKSKNSDTELKIAGQKAERLAELPGILPLQL 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + S RR+F+D VF ++ RL++ RN +L G + + Sbjct: 120 IHPESFTLLSSGPKLRRQFVDWGVFHLETEFFATWAKLTRLLKQRNAILKSGKRYAE-LA 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + A G I R + L+ +I + + P + D AL Sbjct: 179 YWDKEFAVQGTIIAQMRRRYLEQLNPIIKSALA-DFLPEYDFDIRYHQGWDSDIELAAL- 236 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L D T +GP ++D+ + + S G+ K+ + + L+ Sbjct: 237 ------LKQNFMRDQQLGYTSLGPQKADIRIR-ANGVPAHDILSRGQLKLAVCAMRLSQG 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 +S + L+D+ S+ LD+ KR L + + + +Q+F+T DKS +L E K Sbjct: 290 LFLSQHSNKRCTFLIDDFSSELDDSKRKLLAQYLIESKAQVFVTAIDKSQVTALLTEDCK 349 Query: 364 FMRISNHQAL 373 + + + + Sbjct: 350 MFHVEHGKLI 359 >gi|145592571|ref|YP_001156868.1| recombination protein F [Salinispora tropica CNB-440] gi|189039640|sp|A4X0U0|RECF_SALTO RecName: Full=DNA replication and repair protein recF gi|145301908|gb|ABP52490.1| DNA replication and repair protein RecF [Salinispora tropica CNB-440] Length = 377 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 165/385 (42%), Gaps = 23/385 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + + + + VG NGVGKTN++EA+ +++ R A+ A + Sbjct: 1 MYVRRLELVDFRSYERVGVDLEPGANVLVGPNGVGKTNLIEALGYVATLDSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ + A V ++ ++LE R+ R ++ R ++ LR+ Sbjct: 61 VRMGAAAGIIRCAVVHEG---RELLVELEIVPGRANRA-RLGRSPARRARDVLGALRLVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G +RRR+LD ++ PR+ D+ER++R RN LL Y Sbjct: 117 FAPEDLELVRGDPAQRRRYLDDLLVLRQPRYAGVRTDYERVVRQRNALLRTAYLARKTGG 176 Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 D S + + +A G ++ R++++ AL+ + + Sbjct: 177 TRGGDLSTLAVWDDHLARHGAELLAGRLDLVAALAPHVNRAYDAVAAGAGAAGIAYRSSV 236 Query: 235 KFDQSF---CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + S L + L GR + TL+GPHR +L + + S GE Sbjct: 237 ELASSTADRADLTAALSDALAAGRTAEIERGTTLVGPHRDELTLTLGPLPAK-GYASHGE 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350 + + LA L+ G P+L+LD++ A LD +R+ L +V D SQ+ +T Sbjct: 296 SWSFALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRDRLAELVGDA-SQLLVTCAV 353 Query: 351 DKSVFDSLNETAKFMRISNHQALCI 375 ++ + L + + + Sbjct: 354 EEDLPARL--RGARFVVREGEVQRV 376 >gi|325285177|ref|YP_004260967.1| DNA replication and repair protein recF [Cellulophaga lytica DSM 7489] gi|324320631|gb|ADY28096.1| DNA replication and repair protein recF [Cellulophaga lytica DSM 7489] Length = 359 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 162/372 (43%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N+ S FDA+ FVG NGVGKTNIL+AI LS G+ + + Sbjct: 1 MLLKKLSLVNYKNFDSKEFDFDAKINCFVGSNGVGKTNILDAIYHLSFGKSYFNPIASQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G FF + I L+ + ++ N + L + Sbjct: 61 IKHGED-FFVVDGLFFKNDREEKIICSLKKGA---KKVIKKNGKAYDKFSDHIGFLPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S RR+F+D ++ + + ++ + +++ RN LL FD Sbjct: 117 ISPADRDLILEGSDTRRKFIDGVISQSNKEYLTALLKYNKILLQRNSLLKYFAVNHTFDK 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + S Q+ E G I+ RV +N + E + +++T + Sbjct: 177 TTLSVYNEQLQEYGTIIHKERVAFLNEFIPIFKEQYAAISGGKEDVTITY--------NS 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L ++ + + + D + T +G H+ DL + + + GS G+QK L+ + Sbjct: 229 KLLDKDLLQLFNESLEKDRAVQYTTVGTHKDDLSFEINNYPVK-KFGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVF 355 LA I PILLLD+I LDE++ + +V D QIF++ T ++V Sbjct: 288 LAQFNFIKAQAKTTPILLLDDIFDKLDENRVAQIVSLVDDDNFGQIFISDTHADRTENVV 347 Query: 356 DSLNETAKFMRI 367 +++++ K +I Sbjct: 348 KNIHQSYKIFKI 359 >gi|34540225|ref|NP_904704.1| recF protein [Porphyromonas gingivalis W83] gi|51316314|sp|Q7MX24|RECF_PORGI RecName: Full=DNA replication and repair protein recF gi|34396537|gb|AAQ65603.1| recF protein [Porphyromonas gingivalis W83] Length = 364 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 95/376 (25%), Positives = 157/376 (41%), Gaps = 18/376 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L+I F++ A+ F + VG+NG+GKTN+L+A+ FLS R V Sbjct: 1 MIIEELHIVNFKSIAAADCRFSPKVNCLVGNNGMGKTNLLDALHFLSFCRSHLSVPDNMV 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + R E +G I + L R + + L+ N + + + Sbjct: 61 VRHGEEMALLQGLYRDESGDG---IELLLSIRPGK-HKVLRRNKKEYERLSDHIGRFPLV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P ++ G S ERRRF+D+ + DPR+ +I + R ++ RN +L + D + Sbjct: 117 IVSPQDYQLILGGSDERRRFMDQQLCQQDPRYLSALIQYNRHLQQRNTMLKQDRHDDALM 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +E QM +I R I + + + K+SL+ L Sbjct: 177 DVLELQMGSYAAEICNKRSRFIEDFLPVFNDLYSDISGSAEKVSLSYRSHLADGIPLEEL 236 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L R D + + G H+ +L + + GS G+ K L+ + LA Sbjct: 237 -------LRRSRPKDYLLGFSSCGVHKDELEM-LLGGVLIRKIGSEGQNKTFLISMKLAQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL---- 358 R PILLLD+I LD + + R+V G QIF+T T++ D + Sbjct: 289 FRHQQLHGDETPILLLDDIFDKLDATRVERIIRLVGGNGFGQIFITDTNRKNLDEIIASW 348 Query: 359 NETAKFMRISNHQALC 374 +E + +I N Q Sbjct: 349 SEDYRLFKIENGQIFQ 364 >gi|86142885|ref|ZP_01061307.1| DNA replication and repair protein RecF, ABC family ATPase [Leeuwenhoekiella blandensis MED217] gi|85830330|gb|EAQ48789.1| DNA replication and repair protein RecF, ABC family ATPase [Leeuwenhoekiella blandensis MED217] Length = 359 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 160/374 (42%), Gaps = 26/374 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N+ S+ DA+ FVG+NGVGKTN+L+A+ LS G+ + Sbjct: 1 MILKALSLINYKNFESISFDLDAKINCFVGNNGVGKTNVLDAVYHLSFGKSYFNPITTQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + F ++G+ D K+ R + ++ N + + L + Sbjct: 61 INHDAD-----FFVIDGIYDKNDREEKVIVSAKRGQKKVIKRNGKIYERFSDHIGFLPLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 + P+ + S RR+F+D ++ D + +I + +++ RN LL F+ Sbjct: 116 IISPADRDLIIEGSETRRKFMDGVISQSDKAYLDTLIKYNKILSQRNALLKYFNANHTFN 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + QM ELG + R + + + + + + ++ L Sbjct: 176 PDTLAIYNEQMHELGTSLYKKRKQFLEDFTPIFKKRYAAISGDKEEVKLKY--------- 226 Query: 240 FCALKEEYAKKLF-DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L + +LF + K D + T +G HR DL I GS G+QK L+ Sbjct: 227 KSQLNDAPLNQLFEENLKKDRALQYTSVGTHRDDLNFKIESHPIK-KFGSQGQQKSYLIA 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KS 353 + LA I + PILLLD+I LDE + + +V D Q+F++ T ++ Sbjct: 286 LKLAQFDFIKAQSNTTPILLLDDIFDKLDESRVTQIIDLVNDDNFGQLFISDTHADRTEA 345 Query: 354 VFDSLNETAKFMRI 367 + +++T K ++ Sbjct: 346 IVKEIHQTYKLFKL 359 >gi|167855650|ref|ZP_02478408.1| recombination protein F [Haemophilus parasuis 29755] gi|167853222|gb|EDS24478.1| recombination protein F [Haemophilus parasuis 29755] Length = 361 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 76/371 (20%), Positives = 160/371 (43%), Gaps = 18/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I+ FRN ++ L + F+G NG GKT++LEAI +L G+ F+ + Sbjct: 1 MSLSRLIINNFRNLTAVDLELNHGFNFFIGANGSGKTSLLEAIFYLGHGKSFKSHISNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + F +++ E + S+ L+ ++ + L+IN + + +L L + Sbjct: 61 IKYNQEEF-TLFGKIQ--EEKHECSVGLQ-KNRQGETILRINGESNKKIADLAYLLPMQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G + RR FLD +F + +RL++ RN L + + Sbjct: 117 ITPEGLTLLNGGPIYRRAFLDWGLFHQNTDFYHNWNSLKRLLKQRNAALVQTRHYNE-LK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++++ ++ +R ++ + I + Q P ++++ T + + ++ Sbjct: 176 PWDVELSKFAQIVSQSRAVYAESILTYIEKNCQ-FFLPELEITATFYQGWEKER------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +YA L G + D T++GP ++D + S G+ K+++ + LA Sbjct: 229 -DYADLLAQGFERDRSVGYTMVGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL----NE 360 I L+D+ ++ LD K L + GSQ+F+T + + + Sbjct: 287 EYFIAQKNRQCIFLIDDFASELDTQKCELLADRLYQSGSQVFVTAITQEQLKPIQGKRQD 346 Query: 361 TAKFMRISNHQ 371 A I + + Sbjct: 347 NATSFFIKDGK 357 >gi|308047725|ref|YP_003911291.1| DNA replication and repair protein RecF [Ferrimonas balearica DSM 9799] gi|307629915|gb|ADN74217.1| DNA replication and repair protein RecF [Ferrimonas balearica DSM 9799] Length = 355 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 21/370 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+I RN + L + GDNG GKT++LEAI FLS GR FR Sbjct: 1 MGIDRLHIQNLRNIQAATLEPAGGLNLIYGDNGSGKTSVLEAIWFLSVGRSFRTHLAPRA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 R P+ FAR E KL R R ++IN + +L L + Sbjct: 61 IRHDEPN-LVLFARTTAGE-------KLGLRRGRDGDNEVRINGERPERLADLAACLPLQ 112 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RR F+D F DP+ + RL++ RN+LL + D + Sbjct: 113 LISPESFALLLEGPQARREFIDWGAFHSDPQFIGIWSRYRRLLKQRNQLLRQQAPDHQF- 171 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + Q++E G + R +++L+ + + + P + + ++ A Sbjct: 172 AIWDKQLSEYGEALTAIRKRWVSSLNDTLTGII-NQFLPDLPIRVSFSQGWDSKSPLSA- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ + D T+ GPH++DL + + + S G+ K+++ + +A Sbjct: 230 ------QIQGQLERDKQLGYTVSGPHKADLRLRVGNLPVQDGL-SRGQLKLLVCALKIAQ 282 Query: 304 ARLI-SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +++ T I L+D++++ LDE R L + G Q+F+T + + Sbjct: 283 GKILGQKDTSRGCIYLVDDLASELDESHRTLLLEQLISTGEQVFVTAIEPGQLAMIPWD- 341 Query: 363 KFMRISNHQA 372 K + + Sbjct: 342 KRFHVEQGRV 351 >gi|228473756|ref|ZP_04058501.1| RecF protein [Capnocytophaga gingivalis ATCC 33624] gi|228274777|gb|EEK13600.1| RecF protein [Capnocytophaga gingivalis ATCC 33624] Length = 359 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 89/360 (24%), Positives = 153/360 (42%), Gaps = 20/360 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L I F+N S F +GDNGVGKTN L+AI L + + +S Sbjct: 1 MFLKRLYILNFKNIESRDFSFSPSLNCLIGDNGVGKTNSLDAIYHLGMTKSYFSSSTLMN 60 Query: 65 TRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R+G + EG E S+K + L+ N + + + I Sbjct: 61 IRLGEDFYLIEGNFEKEGREETVVCSVK-----KGQKKILKRNGKLYEKLADHIGAFPIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 + PS + S RR+FLD ++ + P + ++ + +++ RN LL Y D Sbjct: 116 IISPSDRDLIHEGSEARRKFLDGLLSQLYPSYLDTLLRYNKVLAQRNTLLKSFHERQYLD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q++ G KI R+ + + + E + ++S+ Sbjct: 176 PDTLDIYDDQLSLYGNKIFQVRLAFLESFLPIFQEQYTHLSQGKEEVSIRY--------E 227 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L +++ L + DS ++ T IG H+ DL++D + + S G+QK L+ + Sbjct: 228 SRLLGQDFKNLLKESFPQDSAAQYTTIGIHKDDLLLDINGQLVK-KFASQGQQKSFLIAL 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358 LA + T PILLLD+I LD + L +VT Q+F++ TDK +++ Sbjct: 287 KLAQFHCLYKQTNTTPILLLDDIFDKLDSKRVAQLISLVTRPPFGQVFLSDTDKERTENI 346 >gi|332991511|gb|AEF01566.1| Recombinational DNA repair ATPase [Alteromonas sp. SN2] Length = 362 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 159/371 (42%), Gaps = 15/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + ++ FRN +S L TI G NG GK++++E+I +L GR FR + V Sbjct: 1 MKLDKVQLTNFRNISSANLSPSPALTIIRGVNGSGKSSLVESIFYLGFGRSFRTNKHTSV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G F S FA + E +++ + R + + C IN + +L + + Sbjct: 61 IKTGEEEF-SVFASCKNEESE-TLNLGFQRRRNDTFTC-SINGEHSNKLSDLVSLVPVQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P + G ERRRF D +F ++ + + F + ++ RN LL + + Sbjct: 118 FTPQSTDLILGSPSERRRFCDWGLFHVEHDFQMLSVQFSKFLKHRNALLKQQSDLSAPQN 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E E ++I R + I+ L+ I E K+SL + + D S Sbjct: 178 QYWEQCFLERAEALSIKREDYISKLTP-IFEKYATTFLAEYKVSLNYYKGWEKDAS---- 232 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 A+ L R+ D T GPH++D+ + S G+ ++ + + +A Sbjct: 233 ---LAESLVKKREYDGKIGHTTSGPHKADIRLKINGVN-AQELLSRGQLRMAVAALQMAQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--T 361 L + T I LLD++ A LD DKR + D+ +Q+F+T + S + + + Sbjct: 289 TELFNTLTNRKSIFLLDDVGAELDADKRELFIDGLLDMDTQVFVTAIESSQLEFIQKYNE 348 Query: 362 AKFMRISNHQA 372 K + + Sbjct: 349 KKMFHVEHGSV 359 >gi|305681550|ref|ZP_07404356.1| DNA replication and repair protein RecF [Corynebacterium matruchotii ATCC 14266] gi|305658710|gb|EFM48211.1| DNA replication and repair protein RecF [Corynebacterium matruchotii ATCC 14266] Length = 382 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 88/375 (23%), Positives = 155/375 (41%), Gaps = 24/375 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L++ +FR++ + T+FVG NG GKTN++EAI +++ R A A + Sbjct: 1 MFIRELSLRDFRSWPHCHVRLGPGITLFVGRNGHGKTNLVEAIGYVAHLGSHRVAQDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G P+ S A + E A + I + IN + EL +R Sbjct: 61 VRHGQPNARVSATAVRDDRELTAHLLI-----NASGANQASINRTRLNSPRELLGVVRTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178 P + G ERRR+LD ++ PR D+E+++R R LL Sbjct: 116 LFCPEDLALVRGEPAERRRYLDNIIATRRPRLAGVKADYEKVLRQRTTLLKTSSAALRRG 175 Query: 179 ------DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTG 230 + +AQ+A G ++ AR ++ L L+ E ++ Sbjct: 176 YSGDDGSLATLDVWDAQLARQGAQMIAARRALVTELDPLVHEAYAGIAPESRPAHIAYES 235 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + ++ +L R + R+L+GPHR DL++ D S G Sbjct: 236 TVP-DVGEDPALIEAAMLAELGRMRPKEIDRGRSLVGPHRDDLVITLGDVPAK-GFASHG 293 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349 E +++ + L +L+ G P+L+LD++ A LD +R L + D+ Q+ +T Sbjct: 294 ETWSMVLALRLGEFQLL-RADGTDPVLILDDVFAELDALRRERLVHLTQDVE-QVLITVA 351 Query: 350 TDKSVFDSLNETAKF 364 + L + + Sbjct: 352 VPDDLPPDLGDIHRI 366 >gi|295133310|ref|YP_003583986.1| DNA replication and repair protein RecF [Zunongwangia profunda SM-A87] gi|294981325|gb|ADF51790.1| DNA replication and repair protein RecF [Zunongwangia profunda SM-A87] Length = 359 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 154/374 (41%), Gaps = 26/374 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N S FD + VG NGVGKTN+L++I L+ G+ + + Sbjct: 1 MHLKHLSLLNYKNLESSSFDFDPKINCMVGHNGVGKTNVLDSIYHLAFGKSYFNPITSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FF E + I + + + ++ N V E + Sbjct: 61 INHEAD-FFVVDGTFEKNDKEEQILVSAKRG---QKKVIKRNQKPYEKVSEHIGFIPAVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S RR+F+D ++ D + +I++ +++ RN LL FD Sbjct: 117 ISPADRDLIIEGSETRRKFMDGVISQSDSGYLNDLINYSKIVSQRNSLLKYFAANHTFDR 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238 Q+ +LG K+ RV+ + + + + N + + L K Sbjct: 177 DTLEVYNLQLNDLGTKLYKKRVDFLQEFVPIFNKRYAEITNNKEPVSIEYKSQLSHK--- 233 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +K L D + D + + T +G H+ DL + I GS G+QK LV Sbjct: 234 -------TLSKLLEDQLQKDMVLQYTSVGTHKDDLSFEIEGHPIK-KFGSQGQQKSFLVA 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS---- 353 + LA I +G PILLLD++ LDE + + +V QIF++ T Sbjct: 286 LKLAQFDFIKKISGVNPILLLDDVFDKLDEQRVAHIVALVATNELGQIFISDTHAERTEK 345 Query: 354 VFDSLNETAKFMRI 367 V N+T K ++ Sbjct: 346 VVKESNQTYKIFKL 359 >gi|255535750|ref|YP_003096121.1| DNA recombination and repair protein RecF [Flavobacteriaceae bacterium 3519-10] gi|255341946|gb|ACU08059.1| DNA recombination and repair protein RecF [Flavobacteriaceae bacterium 3519-10] Length = 359 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 169/372 (45%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + +F+N++ L F Q FVG+NGVGKTN+L+A+ +LS G+ F + + Sbjct: 1 MVIQKLQLIQFKNHSQQTLEFSPQINCFVGNNGVGKTNVLDALHYLSVGKSFLGNTDLNN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FF+ ++ E I I++ + + ++ ND + + L Sbjct: 61 IQTDGD-FFAIEGKIYDGEKENIIKIQM---PRDAKKLIKKNDKSYDRMADHIGFLPSVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180 + P + S RR+FLD M+ D + +I +++ ++ RN LL YFD Sbjct: 117 ISPYDSNLISDSGESRRKFLDAMISQTDSDYLYNLIQYQKTIQQRNALLKSFAKNRYFDP 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + G I I R E ++++ LI Y + + ++++ D K Sbjct: 177 ENLEIYNEPLIRFGTAIFIKRTEFLDSILPLIQSYYSIISNGNEQVTVDYHSDLKTS--- 233 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + L + D + T G H+ DL+ + ++ GS G+QK L+ + Sbjct: 234 -----SFEELLNENLDKDRVLTYTSKGIHKDDLVFEMNGNSLKRT-GSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDS-- 357 L+ I TG P+LLLD+I LD+ + L +V + QIF+T T+K +S Sbjct: 288 LSQMNRIKELTGKTPVLLLDDIFDKLDDSRVLQLIELVNREHFGQIFITDTNKERTESVV 347 Query: 358 --LNETAKFMRI 367 +NE +K I Sbjct: 348 RKINEESKIFEI 359 >gi|226303493|ref|YP_002763451.1| DNA replication and repair protein RecF [Rhodococcus erythropolis PR4] gi|259563669|sp|C0ZLE4|RECF_RHOE4 RecName: Full=DNA replication and repair protein recF gi|226182608|dbj|BAH30712.1| DNA replication and repair protein RecF [Rhodococcus erythropolis PR4] Length = 409 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 162/387 (41%), Gaps = 34/387 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++ +FR++ SL L T+F+G NG GKTN+LE++ +LS R ++ A + Sbjct: 1 MFVRRFSLRDFRSWDSLTLDLTPGTTVFLGSNGHGKTNVLESLGYLSTLSSHRVSTDAPM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS S F+ V +++I +E + +S R +IN R E+ L+ Sbjct: 61 IRSGSASAFAGATVVNNG---RELTIDVELIEGKSNRA-RINQSPTRRPREVLGILQSVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 P + G +RRR+LD ++ + PR D+++++R R+ LL Sbjct: 117 FAPEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDKVLRQRSALLKTAGAALRRGS 176 Query: 180 --------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLT 229 S + +A G ++ R+E+++ L+ + E + + Sbjct: 177 RGGESDNVLSTLEVWDGHLAAHGAQLLAGRLELVHDLAPHLAESYRSIAPESRPASIRYK 236 Query: 230 GFLDGKFDQSFCA------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 L D F L+E + +L R + L+GPHR DL + Sbjct: 237 SSLGSSLDPEFTDPARISGIDDVAYLEERFHLELAQMRSKEIDRGVCLVGPHRDDLELVL 296 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 D S GE + + LA L+ G P+L+LD++ A LD +R AL Sbjct: 297 GDSPAK-GFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRRRRRALA-T 353 Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKF 364 V Q+ +T E AKF Sbjct: 354 VAATAEQVLITAAVPEDVPDELEAAKF 380 >gi|296127873|ref|YP_003635123.1| DNA replication and repair protein RecF [Cellulomonas flavigena DSM 20109] gi|296019688|gb|ADG72924.1| DNA replication and repair protein RecF [Cellulomonas flavigena DSM 20109] Length = 398 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 87/379 (22%), Positives = 158/379 (41%), Gaps = 39/379 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + L + T VG NG GKTN++EA+ +++ R S A + Sbjct: 1 MYVAHLSLTDFRSYPQVELPLEPGITALVGPNGQGKTNLVEAVGYVATLGSHRVPSDAAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ R + + +++E ++ R R D L LR Sbjct: 61 VRAGTS---RAVVRAKVVREERSTLVEVEITPGKANRSRVNGGSPGRARDVL-GILRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G RRRFLD ++ + PR + D+ER++R R+ LL Sbjct: 117 FAPEDLALVKGDPDGRRRFLDELLVQLTPRIAGVLGDYERVLRQRSALLKSAAAATRARA 176 Query: 179 --DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDG 234 D +A++A+ G ++ +AR ++ AL + ++ + + L+ LD Sbjct: 177 GADLRTLDVWDAKLAQTGAQVVVARQALVRALQPRAADAYRQVSAGQGELVLTYRSSLDA 236 Query: 235 KFDQSFCAL-----------KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 D++ AL + + R + L+GPHR DL+++ Sbjct: 237 ALDEAPDALTGAPDVGVELVEARLLDAMGRLRGKEIERGVCLVGPHRDDLVLELGGLPAK 296 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGF------------APILLLDEISAHLDEDKR 331 + S GE V + + LA L+++ P+L+LD++ A LD +R Sbjct: 297 -GYASHGESWSVALALRLASYGLLTHGVDDAGAWSADWGPDGEPVLILDDVFAELDARRR 355 Query: 332 NALFRIVTDIGSQIFMTGT 350 L +V Q+ +T Sbjct: 356 ERLAELVAPAR-QVLVTAA 373 >gi|328472402|gb|EGF43269.1| DNA replication and repair protein recF [Lactobacillus rhamnosus MTCC 5462] Length = 341 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 133/327 (40%), Gaps = 13/327 (3%) Query: 36 NGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETR 95 N GKTN+LEAI L+ R R + ++ R GS FARV G + +LE Sbjct: 6 NAQGKTNLLEAIYVLALARSHRTNNDKELIRFGSD-----FARVSGQISRQSGTHQLELI 60 Query: 96 DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + +I+ + + + H + P I G RRRF+D + P++ Sbjct: 61 ISHQGKRARIDRIEQSKLSQYLGHFNVILFAPEDLAIVKGSPAGRRRFIDMEFGQMSPKY 120 Query: 156 RRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 + ++ ++ RN L + D + + +A G ++ AR +++ +S Sbjct: 121 LYNLSQYKTFLKQRNAYLKQLKYHQAKDLVYLDVLTDSLAAFGAELITARAKLLQTMSDY 180 Query: 212 IMEYVQKENFPHIKLSLTG--FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 Q KL + Q + E + + +L+GPH Sbjct: 181 AATIQQDITKGREKLQFAYQTQVAADLRQDSEQVYEALGALFAKQQSREIEQGTSLVGPH 240 Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 R D++ DK + GS G+Q+ + + LA L+ + TG P+LLLD++ + LD Sbjct: 241 RDDVLFIVNDKDV-ANFGSQGQQRTTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAI 299 Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFD 356 ++ L + + Q F+T T Sbjct: 300 RQTHLLKAI-QTKVQTFLTTTSLDGIQ 325 >gi|256820016|ref|YP_003141295.1| DNA replication and repair protein RecF [Capnocytophaga ochracea DSM 7271] gi|256581599|gb|ACU92734.1| DNA replication and repair protein RecF [Capnocytophaga ochracea DSM 7271] Length = 373 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 150/355 (42%), Gaps = 20/355 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ ++N S F FVGDNGVGKTN+L+AI L + + S Sbjct: 2 MFLKQISVVNYKNILSQAYAFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQN 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHLRIS 123 R G F +EG + ++ + + + N + + + Sbjct: 62 VRHGEE-----FYLIEGQFRQEEREEQIVCSLKKGQKKVMKHNGKAYERLADHIGKYPMV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFD 179 + PS + S RR+FLD ++ D + ++ + R + RN LL + G F Sbjct: 117 LISPSDRDLIVEGSETRRKFLDSVISQTDRAYLELLLRYNRTLLQRNTLLKQMTEGGVFS 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q+A LG I R + + E + ++SL D QS Sbjct: 177 LETLHIYDEQLAPLGQHIYEKRRTFMEEFLPIFSEQYAYISGGKERVSLHY--DSSLHQS 234 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + A +L + + D ++ T G H+ DL+ + + +GS G+QK L+ + Sbjct: 235 ------DLATQLVENTERDRSAQYTTAGIHKDDLLFEIEGYPMK-KYGSQGQQKSFLIAL 287 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTDKS 353 L+ ++ + G PI+LLD+I LD+ + L ++VT Q+F+T T Sbjct: 288 KLSQFEVLKQSLGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITDTHPQ 342 >gi|260063479|ref|YP_003196559.1| DNA replication and repair protein RecF [Robiginitalea biformata HTCC2501] gi|88782923|gb|EAR14097.1| DNA replication and repair protein RecF, ABC family ATPase [Robiginitalea biformata HTCC2501] Length = 359 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 160/372 (43%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ ++N+ S FD++ VG NG+GKTN+L+AI L+ G+ + Sbjct: 1 MHLNRLSLLNYKNFESRDFSFDSKINCLVGPNGIGKTNVLDAIYHLAFGKSYFNPVTTQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G FF + I + + L+ ND + + + + Sbjct: 61 IRHGED-FFVIDGVFDKEGEAEHIVCSFKKGVR---KVLKRNDKAYDRISDHIGTVPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S RR+FLD ++ D + + ++D+++++ RN LL FDS Sbjct: 117 VSPADRDLILEGSETRRKFLDGVISQSDRGYLQDVLDYQKVLSQRNALLKYFAANHRFDS 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 QMA LG +I+ R + + E Q + + L Q Sbjct: 177 ETLEVYNMQMAALGSRIHGKRAAFMEEFQPIFSEQYQAISGGDETVGLAY-----ESQLA 231 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A EE L + D + + T G H+ DL + I GS G+QK L+G+ Sbjct: 232 DAPLEEL---LRRSLEKDRVLQYTTQGIHKDDLSMTIEGHPIK-KFGSQGQQKSFLIGLK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD----KSVF 355 A + + PILLLD+I LDE++ + +V D+ QIF++ T ++V Sbjct: 288 FAQFQFMKARRPGTPILLLDDIFDKLDENRVAHIISLVNRDLFGQIFISDTHADRTEAVV 347 Query: 356 DSLNETAKFMRI 367 ++++ F+ + Sbjct: 348 KKIHQSYAFIEL 359 >gi|220910787|ref|YP_002486096.1| recombination protein F [Arthrobacter chlorophenolicus A6] gi|254790459|sp|B8H7D1|RECF_ARTCA RecName: Full=DNA replication and repair protein recF gi|219857665|gb|ACL38007.1| DNA replication and repair protein RecF [Arthrobacter chlorophenolicus A6] Length = 402 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 94/394 (23%), Positives = 165/394 (41%), Gaps = 43/394 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++++FR+YA + LV T+ VG NG+GKTN++EAI +L+ R +S + Sbjct: 1 MYLEHLSLTDFRSYAQVDLVLSPGVTVLVGYNGIGKTNLMEAIGYLATLSSHRVSSDGPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V + ++LE R+ R +IN +L + Sbjct: 61 LRFGTERALVRARLVRNGQTTV---LELEINAGRANRG-RINRSNPVRARDLLGICQTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------F 178 P + G RRRFLD ++ ++ P H D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPSNRRRFLDELLASLVPHHAATRSDYDRVLKQRNALLKSARAGRVTAA 176 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKF 236 + + MA+ G ++ AR+E++ L + + L + Sbjct: 177 HEATLDVWDQHMAKAGAELLHARLELVELLRPHLARAYAELTDASKPADAIYRSTLQNQM 236 Query: 237 DQ-------------------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 D S L + Y + + RK + +L+GPHR Sbjct: 237 DDDGASLGATGRPGPGDAAAAEDLRGLSIEELTQRYVRAFGESRKKELERGISLVGPHRD 296 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDE 328 DL + +A + S GE + + + LA ++ + T G APIL+LD++ A LD Sbjct: 297 DLEL-VLGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELDV 355 Query: 329 DKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361 +R L IV+ Q+ +T D + + L+ Sbjct: 356 QRRRKLAAIVSGAE-QVLVTAAVDADIPEELSGR 388 >gi|313205904|ref|YP_004045081.1| DNA replication and repair protein recf [Riemerella anatipestifer DSM 15868] gi|312445220|gb|ADQ81575.1| DNA replication and repair protein RecF [Riemerella anatipestifer DSM 15868] Length = 360 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 163/373 (43%), Gaps = 22/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L ++ F+N+ F ++ FVG+NGVGKTNIL+A+ +LS G+ F S + Sbjct: 1 MIIKKLYLTNFKNHQERVFDFSSEINSFVGNNGVGKTNILDALHYLSVGKSFLGNSDVNN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G FF+ A V+ E + I + + + ++ ND + + L Sbjct: 61 ILTGED-FFTLEAVVDDGEKETILKI---IQSKDAKKLVKKNDKSYARLSDHIGFLPSVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180 + P + S RRRFLD M+ +D + ++ +++ ++ RN LL YFD Sbjct: 117 ISPYDANLISDSGESRRRFLDAMISQVDAEYLHSIMQYQKALKQRNALLKSFAKNRYFDK 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + + I R I L + + + ++ + D + Sbjct: 177 DSLEIYDEPLCQYAGVIFEKRSLFITQLLPTFLHFYNMISNGKEEVDIVYQSDLE----- 231 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ A+ L + D + T G H+ +L + + GS G+QK L+ + Sbjct: 232 ---EQTMAEVLSQNVEKDRVLTYTSKGIHKDELRFEMSG-DLIKKIGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS----VF 355 LA I TG P+LLLD+I LD+ + L +V + QIF+T T K V Sbjct: 288 LAQINRIKEITGKTPLLLLDDIFDKLDDRRVAQLIELVNKEHFGQIFITDTHKERTEAVV 347 Query: 356 DSLNETAKFMRIS 368 ++NE ++ I+ Sbjct: 348 KNINEESRIFEIT 360 >gi|213966253|ref|ZP_03394437.1| DNA replication and repair protein RecF [Corynebacterium amycolatum SK46] gi|213951105|gb|EEB62503.1| DNA replication and repair protein RecF [Corynebacterium amycolatum SK46] Length = 399 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 96/389 (24%), Positives = 167/389 (42%), Gaps = 32/389 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I++L++ +FR++ L + F T+F G NG GKTNI+EA+ +LS R + A + Sbjct: 1 MHIRYLSLRDFRSWPELEVEFTPGITVFTGQNGYGKTNIVEAVGYLSTLGSHRVSMDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+PS S A +G E A + I + QIN ++ EL ++ Sbjct: 61 VRSGTPSARISATAVNDGRELTAHLLI-----NPHRANQAQINRTRLKSPRELLGIVKSV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174 + P + G RRR++D ++ P I +++++R +N LL Sbjct: 116 FFSPEDLTLVKGEPASRRRYIDDLLALRRPLSAGIRIQYDKILRQKNALLKSAGSTLRRG 175 Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH---IKLS 227 EG S + +AQ+A++G + AR+++I LS + E PH ++ Sbjct: 176 YSSSEGQAALSTLDTWDAQLAQVGAALMAARMDLIAELSEHVSEAYATL-APHSRPATIA 234 Query: 228 LTGFLD----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 +D G L+ K+ + R + L+GPHR DL + Sbjct: 235 YAPKVDSLDGGPLPSEPELLEALLLTKMAERRTAEIERGSCLVGPHRDDLDL-ILGNDPA 293 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 S GE + + L L+ G PIL+LD++ A LD +R AL I Sbjct: 294 KGFASHGETWSFALALRLGAYFLL-RADGPDPILVLDDVFAELDRHRREALMEIAQQAEQ 352 Query: 344 QIFMTGTDKSVFDSLNETAKFMRISNHQA 372 + + + + +L + + +++H Sbjct: 353 VLITSAVGEELPQALIDDS---SVTHHTV 378 >gi|68535065|ref|YP_249770.1| recombination protein F [Corynebacterium jeikeium K411] gi|260579563|ref|ZP_05847434.1| DNA replication and repair protein recF [Corynebacterium jeikeium ATCC 43734] gi|97180706|sp|Q4JYF5|RECF_CORJK RecName: Full=DNA replication and repair protein recF gi|68262664|emb|CAI36152.1| DNA replication and repair protein RecF [Corynebacterium jeikeium K411] gi|258602334|gb|EEW15640.1| DNA replication and repair protein recF [Corynebacterium jeikeium ATCC 43734] Length = 425 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 95/412 (23%), Positives = 165/412 (40%), Gaps = 55/412 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +S +R++ L L TIF G NG GKTNI+EA+ +L+ R S A + Sbjct: 1 MYVSNLRLSNYRSWEELDLQLSPGITIFSGPNGHGKTNIVEALGYLAHLSSHRVNSDAAL 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + S A G E A ++I+ R IN + +L +R + Sbjct: 61 VRRGEEIANISATAVNNGRELTAHLAIR-----ARGSNRAHINRAAMNSQRDLLGVVRTT 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 P + G +RR FLD ++ A PR D+++ +R RN LL + F Sbjct: 116 LFSPEDLALIRGEPEQRRHFLDAIMVARYPRLAAVKADYDKALRQRNALLRQSAFALRLV 175 Query: 183 -------------------------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217 ++Q+A LG +I ARV++++ L+ + + Q Sbjct: 176 VGAPKGASHNLSEDIKADAESALATLDVWDSQLAALGAQIMSARVQIVHDLAPHLQQTYQ 235 Query: 218 K---ENFPHIKLSLTGFLDGKFDQ-----------------SFCALKEEYAKKLFDGRKM 257 ++ P +S T +D + S + + + R Sbjct: 236 SLAPQSRP-AHMSYTSTIDVELADLGIRLGVSEPNQPTALLSPEIAEATLLQAFANKRPQ 294 Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317 + TL+GPHR D+ + + S GE + + LA A + G P++ Sbjct: 295 EVERGTTLLGPHRDDVNL-ILGHQPAKGYASHGESWSFALSLRLA-AFFMQRGDGVEPVV 352 Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 +LD++ A LD +R L +++ + D+ + ++L + AK I Sbjct: 353 ILDDVFAELDSSRRQHLVDLISSAEQVLITAAVDEDIPEALRDVAKIYTIDE 404 >gi|227831833|ref|YP_002833540.1| DNA replication and repair protein [Corynebacterium aurimucosum ATCC 700975] gi|262183097|ref|ZP_06042518.1| recombination protein F [Corynebacterium aurimucosum ATCC 700975] gi|254790471|sp|C3PE74|RECF_CORA7 RecName: Full=DNA replication and repair protein recF gi|227452849|gb|ACP31602.1| DNA replication and repair protein [Corynebacterium aurimucosum ATCC 700975] Length = 392 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 93/380 (24%), Positives = 163/380 (42%), Gaps = 27/380 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L++ +FR++ L L T+FVG NG GKTNI+EAI + + R A A + Sbjct: 1 MYIRDLDVRDFRSWPELTLRLKPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVAHDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + S A +G E A + IK + QIN ++ EL ++ Sbjct: 61 VRQGAHNARISATAVNQGRELTAHLLIK-----PHAANQAQINRTRLKSPRELLGVVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176 P + G RR++LD ++ + PR D++++++ RN LL G Sbjct: 116 LFSPEDLSLVRGEPAARRQYLDDIIASRTPRLAGVKADYDKVLKQRNALLKSASPSLRRG 175 Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228 Y DS + + Q++ LG ++ AR+ +++ L LI + Sbjct: 176 YSDSDGASALATLDVWDTQLSSLGAQVIQARLALVDELRELIPAAYAGLAPESRPAAIDY 235 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 +D + A+ +L R+ + +L+GPHR DL+++ + S Sbjct: 236 KSTVDISDREVIEAM---MLTELATKRQREIERGISLVGPHRDDLVLNL-GTSPAKGFAS 291 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + LA L+ G PIL+LD++ A LD +R L R+ Q+ +T Sbjct: 292 HGETWSYAISLRLAEFNLLRQ-DGTDPILILDDVFAELDAKRREKLVRLAAGAE-QVLIT 349 Query: 349 GTDKSVFDSLNETAKFMRIS 368 + + ++ Sbjct: 350 AAVDEDLPGNLQPIERFTVT 369 >gi|315225438|ref|ZP_07867252.1| recombination protein F [Capnocytophaga ochracea F0287] gi|314944711|gb|EFS96746.1| recombination protein F [Capnocytophaga ochracea F0287] Length = 374 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 151/355 (42%), Gaps = 20/355 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ ++N S VF FVGDNGVGKTN+L+AI L + + S Sbjct: 2 MFLKQISVVNYKNILSQAYVFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQN 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHLRIS 123 R G F +EG + ++ + + + N + + + Sbjct: 62 VRHGEE-----FYLIEGQFRQEEREEQIVCSLKKGQKKVMKHNGKAYERLADHIGKYPMV 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFD 179 + PS + S RR+FLD ++ D + ++ + R + RN LL + G F Sbjct: 117 LISPSDRDLIVEGSETRRKFLDSVISQTDRAYLELLLRYNRTLLQRNTLLKQMAEGGVFS 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q+A LG I R + + E + ++SL D QS Sbjct: 177 LETLHIYDEQLAPLGQHIYEKRRAFMKEFLPIFSEQYAYISGGKERVSLQY--DSSLHQS 234 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + A +L + + D ++ T G H+ DL+ + + +GS G+QK L+ + Sbjct: 235 ------DLATQLAENTERDRSAQYTTAGIHKDDLLFEIEGYPMK-KYGSQGQQKSFLIAL 287 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTDKS 353 L+ ++ + G PI+LLD+I LD+ + L ++VT Q+F+T T Sbjct: 288 KLSQFEVLKQSLGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITDTHSQ 342 >gi|209524390|ref|ZP_03272939.1| DNA replication and repair protein RecF [Arthrospira maxima CS-328] gi|209495181|gb|EDZ95487.1| DNA replication and repair protein RecF [Arthrospira maxima CS-328] Length = 379 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 178/381 (46%), Gaps = 19/381 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ +FRNY + + FDA TI VG+N GK+N+LEA+ LS + R D+ Sbjct: 1 MYLKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + A +E G D+++ L ++ R + IN ++ + L + Sbjct: 61 V-LDNHAIAQITATLERDSGTLDLALTLRSQGR---RTVAINGQSVKRHLDFLSILNVVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSS 181 + G ERR +LDR++ ++P + + + R++R RN LL G Sbjct: 117 FSSLDLDLVRGSPAERRHWLDRLLIQLEPVYAYMLDQYNRVLRQRNALLKRGPMAGTTPE 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238 + +AQ+A G ++ R +I L L + Q + L++T + + Sbjct: 177 ELAVWDAQLAVAGARVLRRRDRVIERLEPLARMWHQSISGSRETLNITYQPNIEPPSKQQ 236 Query: 239 ------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +++ + K+ + TL+GPHR D+I ++ +GS+G+Q Sbjct: 237 QRWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFTI-NQTPARQYGSSGQQ 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + +++ + LA +LI + G P+LLLD++ A LD ++N L + +++ Q +T T Sbjct: 296 RTLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLITTTHL 354 Query: 353 SVFDS-LNETAKFMRISNHQA 372 FD + ++ + + + Sbjct: 355 GAFDHQWLQQSQILMVEQGKI 375 >gi|108248035|emb|CAK32505.1| hypothetical protein [uncultured microorganism] Length = 370 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 154/378 (40%), Gaps = 21/378 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-AD 63 + + I ++N A RL F + +G+NG GKTN+L+AI +LS R F S + Sbjct: 1 MTLNTATIVNYKNIAEARLEFSPKLNCLIGNNGQGKTNVLDAIYYLSMCRSFASTSDNSA 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDELNKHLRI 122 V R G P + ++G + +++ R R + + + + + + L + Sbjct: 61 VIRHGEP-----YMMLQGSYTRQETPLEISVALQRGKRKVVRRDGKEYQRLSQHIGLLPV 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + P + G ERRRF+D ++ D + +I + + + RN ++ + D Sbjct: 116 VMVSPMDWDLVRGSGEERRRFMDLIISQNDNEYLDALIRYNKAVEQRNAMIKKEMRDPLL 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++E MA+ I+ R + + + M Y + +SL Sbjct: 176 YETVEQAMAQHAALIHQRRSQWVEQFLPIFMHYYHAVAGDNETVSLHYKSHLNDGT---- 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L R+ D + T G HR D+ + D + GS G+ K + + A Sbjct: 232 ----MQEHLAATRERDLIIGHTTRGIHRDDIELMLDDYPMRHT-GSQGQCKTYTIALRFA 286 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL--- 358 + PILLLD+I LD + + +V +D QIF+T T+++ D + Sbjct: 287 QFDFLKANNATVPILLLDDIFDRLDASRVERIVDVVSSDRFGQIFITDTNRTHLDEIVAR 346 Query: 359 -NETAKFMRISNHQALCI 375 M++ N + Sbjct: 347 HGGGHCLMQVENGNVTTL 364 >gi|229491171|ref|ZP_04384999.1| DNA replication and repair protein RecF [Rhodococcus erythropolis SK121] gi|229321909|gb|EEN87702.1| DNA replication and repair protein RecF [Rhodococcus erythropolis SK121] Length = 409 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 162/387 (41%), Gaps = 34/387 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++ +FR++ SL L T+F+G NG GKTN+LE++ +LS R ++ A + Sbjct: 1 MFVRRFSLRDFRSWDSLTLDLTPGTTVFLGSNGHGKTNVLESLGYLSTLSSHRVSADAPM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS S F+ V +++I +E + +S R +IN R E+ L+ Sbjct: 61 IRSGSASAFAGATVVNNG---RELTIDVELIEGKSNRA-RINQSPTRRPREVLGILQSVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 P + G +RRR+LD ++ + PR D+++++R R+ LL Sbjct: 117 FAPEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDKVLRQRSALLKTAGAALRRGS 176 Query: 180 --------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLT 229 S + +A G ++ R+E+++ L+ + E + + Sbjct: 177 RGGESDNVLSTLEVWDGHLAAHGAQLLAGRLELVHDLAPHLAESYRSIAPESRPASIRYK 236 Query: 230 GFLDGKFDQSFCA------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 L D F L+E + +L R + L+GPHR DL + Sbjct: 237 SSLGSSLDPEFTDPARISGIDDVAYLEERFHHELAQMRSKEIDRGVCLVGPHRDDLELIL 296 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 D S GE + + LA L+ G P+L+LD++ A LD +R AL Sbjct: 297 GDSPAK-GFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRRRRRALA-T 353 Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKF 364 V Q+ +T E AKF Sbjct: 354 VAATAEQVLITAAVPEDVPDELEAAKF 380 >gi|325105363|ref|YP_004275017.1| DNA replication and repair protein RecF [Pedobacter saltans DSM 12145] gi|324974211|gb|ADY53195.1| DNA replication and repair protein RecF [Pedobacter saltans DSM 12145] Length = 368 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 156/377 (41%), Gaps = 23/377 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ F+NY L F F GDNG GKTN+L+AI +L+ + + + Sbjct: 1 MYLKNLSLINFKNYDEAELSFSEGANAFSGDNGAGKTNLLDAIHYLALCKSYFNPIDSQQ 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + E + +K + + N + + + + Sbjct: 61 IKQEQDFFMIQGVFDKNTEEIVACGVK-----RNQKKQFKRNKKEYQRLADHIGLFPLVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 + P+ + S ERR+F+D ++ DP++ +I + + + RN LL G +D Sbjct: 116 ISPNDVSLILDGSEERRKFIDNVISQTDPKYLDELIIYNKNLLNRNSLLKNIAETGKYDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 ++ Q+ G I R + + ++ K+ L Sbjct: 176 YLLEILDEQLVNSGRIIFEKRAAFMERFVPIFNQHYSYLTDDAEKVELIY--------DS 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ + L + D + +RT G H+ +LI + + GS G+QK L+ + Sbjct: 228 PLQSGDFQELLQKSIEKDRILQRTTTGIHKDELIFSVHEMPLK-KFGSQGQQKSFLIALK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS----VF 355 LA + GF P+LLLD+I LD+ + L ++V+ D QIF+T T+ VF Sbjct: 287 LAKYSFLYQEKGFKPLLLLDDIFDKLDDKRITKLMKMVSEDDFGQIFITDTNPERLKRVF 346 Query: 356 DSLNETAKFMRISNHQA 372 + ++ I+N Q Sbjct: 347 NDISVALNLFHINNQQV 363 >gi|188989399|ref|YP_001901409.1| recombination protein F [Xanthomonas campestris pv. campestris str. B100] gi|167731159|emb|CAP49331.1| DNA replication and repair protein [Xanthomonas campestris pv. campestris] Length = 397 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 79/370 (21%), Positives = 146/370 (39%), Gaps = 9/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ + + GDNG GKT++LEA+ ++ GR FR + Sbjct: 24 MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFRGRVRDGL 83 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G E + + + R +++ + + L L + Sbjct: 84 IRQGGQDLEIFVEWRERAGDSTERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 143 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 144 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPQMLD 202 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R++ + L ++ P + LS F G Sbjct: 203 AWDHELAESGETLTSRRLQYLERLQERLVPVATAI-APSLGLSALTFAPGWRRHEVS--- 258 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T GPHR+D + A S G+ K+ + LA A Sbjct: 259 --LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDAL-SRGQAKLTALACLLAQA 315 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ G PI+ LD++ + LD + + + + +Q+ +T T+ +T Sbjct: 316 EDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATELPPGLADAGKTLH 375 Query: 364 FMRISNHQAL 373 + + Q + Sbjct: 376 RFHVEHGQLV 385 >gi|226362898|ref|YP_002780678.1| recombination protein F [Rhodococcus opacus B4] gi|254790485|sp|C1B7T0|RECF_RHOOB RecName: Full=DNA replication and repair protein recF gi|226241385|dbj|BAH51733.1| DNA replication and repair protein RecF [Rhodococcus opacus B4] Length = 410 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 165/392 (42%), Gaps = 39/392 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FR++ +L L T+FVG NG GKTN+LEA+ +LS R +S A + Sbjct: 1 MFVRALSLRDFRSWDALGLNLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F+ V ++++ LE + +S R +IN R E+ L+ Sbjct: 61 IRTGTAQAFAGATVVNTG---RELTVDLELNEGKSNRA-RINQSPTRRPREILGILQTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 P + G +RRR+LD ++ + PR D+ER++R R+ LL Sbjct: 117 FAPEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYERVLRQRSALLKTAGGALRRSS 176 Query: 175 --------EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--I 224 +G + + +A G ++ R+ +++ L+ + E Q Sbjct: 177 RGGGRPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPA 236 Query: 225 KLSLTGFLDGKFDQSFCA------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 + L F A L+E + ++L R + L+GPHR D Sbjct: 237 SIRYRSSLGSSLPPEFTAPARAPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDD 296 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 L + D S GE + + LA L+ G P+L+LD++ A LD +R Sbjct: 297 LELHLGDTPAK-GFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRKRRR 354 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 AL ++ D Q+ +T + +F Sbjct: 355 ALAKVALDAE-QVLITAAVPEDVPEELDAVRF 385 >gi|88803287|ref|ZP_01118813.1| DNA replication and repair protein RecF, ABC family ATPase [Polaribacter irgensii 23-P] gi|88780853|gb|EAR12032.1| DNA replication and repair protein RecF, ABC family ATPase [Polaribacter irgensii 23-P] Length = 359 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 159/372 (42%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ F+N + F + FVG+NGVGKTNIL+AI +LS + + + Sbjct: 1 MYLKKISLLNFKNLEAQSFDFQQKINCFVGNNGVGKTNILDAIYYLSFAKSYFNSVAIQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ SFF I L+ + L+ N E L + Sbjct: 61 IRHGA-SFFMVEGDYVIDHRNEKIVCSLK---KGQKKVLKRNGKSYEKFSEHIGQLPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + + S RR+F+D ++ + + ++ + +++ RN LL FD+ Sbjct: 117 ISPADRDLVTEGSDTRRKFIDGVISQQNKNYLLDLLAYNKVLTQRNALLKYFAANRTFDA 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S +AQ++E G +I R + + E Q + ++ L + D S Sbjct: 177 LNLSVYDAQLSEYGTRIYEVRKAFLEKFIPIFNEKYQVISNDKERVDLV-YKSQLNDFSM 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +L L + D + + T G H+ DL + D I GS G+QK L+ + Sbjct: 236 NSL-------LQKSLEKDKILQYTTAGTHKDDLSFEIGDYPIK-KFGSQGQQKSYLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL- 358 A I + PILLLD+I LDE + + +V D QIF+T T +++ Sbjct: 288 FAQFEFIKQQSNVVPILLLDDIFDKLDESRVLQIINLVNNDEFGQIFITDTHSERTENIV 347 Query: 359 ---NETAKFMRI 367 N+ K ++ Sbjct: 348 KQSNKPYKIFKL 359 >gi|291543408|emb|CBL16517.1| recF protein [Ruminococcus sp. 18P13] Length = 370 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 154/377 (40%), Gaps = 15/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L FRN ++L D ++ + VG N GKTN+LEAI L+ R FR D+ Sbjct: 1 MHLTGLEAEHFRNLEHIQLEPDPRYNLIVGQNAQGKTNLLEAIWLLTGCRSFRGVRERDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A + + I + + + +N V +R L + Sbjct: 61 VSFDQEVMRMQAAF---RDSRREQHITYAIQKSSREKKITLNGVPLRGGSRLFAQFQCVV 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P + GL +RR FLD I P++ + FE L RN++L G Sbjct: 118 FTPDDTMLIKGLPDKRRNFLDLCCAQIRPKNMDVLRRFENLTIQRNQVLRSIGAGNGTPL 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + +AQ+A G ++ R + + + +L++ D Sbjct: 178 DLAIWDAQLAVAGAHLSHIRHSYVQRFAPVCARLYNIITGGREQLTVEYQSGMYRDYEMP 237 Query: 242 A-----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +++ Y +KL D T IG R DL+ K + GS G++K Sbjct: 238 ETVTEPMQDYYLRKLTMSSTDDIRLGYTSIGASRDDLLFKINGKPVR-DFGSQGQKKSTA 296 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA A + ++ G +P++LLD++ LD+ ++ ++ IV ++ Q+F+T ++ Sbjct: 297 LVLKLAQAEIYRHSQGQSPVVLLDDVMGELDKSRQELVYSIVQEM--QVFITTCNEGAVL 354 Query: 357 SLNETAKFMRISNHQAL 373 ++ + I N + L Sbjct: 355 G-SDRGMRITIENGKIL 370 >gi|159035678|ref|YP_001534931.1| recombination protein F [Salinispora arenicola CNS-205] gi|189039637|sp|A8LVH1|RECF_SALAI RecName: Full=DNA replication and repair protein recF gi|157914513|gb|ABV95940.1| DNA replication and repair protein RecF [Salinispora arenicola CNS-205] Length = 376 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 91/382 (23%), Positives = 165/382 (43%), Gaps = 23/382 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + + + + VG NGVGKTN++EA+ +++ R A+ A + Sbjct: 1 MYVRRLELVDFRSYERVGVDLEPGANVLVGHNGVGKTNLIEALGYVATLDSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ + A V ++ I+LE R+ R ++ R ++ LR+ Sbjct: 61 VRMGAGAAVIRCAVVHEG---RELLIELEIVPGRANRA-RLGRSPARRARDVLGALRLVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRR+LD ++ PR+ D+ER++R RN LL Y Sbjct: 117 FAPEDLELVRGDPAERRRYLDDLLVLRQPRYAGVRADYERVVRQRNALLRTAYLARKTGG 176 Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 D S + + +A G ++ R++++ AL+ + + Sbjct: 177 TRGGDLSTLAVWDDHLARHGAELLAGRLDLVAALAPHVTRAYDAVAAGTGAAGIAYRPSV 236 Query: 235 KFDQSFCA---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + L + L GR + TL+GPHR DL + + S GE Sbjct: 237 ELPTPTTDRADLTAALSAALAAGRSAEIERGTTLVGPHRDDLTLTLGPLPAK-GYASHGE 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350 + + + LA L+ G P+L+LD++ A LD +R+ L ++V D SQ+ +T Sbjct: 296 SWSLALALRLAGYDLL-RVDGIEPVLVLDDVFAELDTGRRDRLAQLVGDA-SQLLVTCAV 353 Query: 351 DKSVFDSLNETAKFMRISNHQA 372 ++ V L + + Sbjct: 354 EEDVPARL--RGARFVVRGGEV 373 >gi|311696596|gb|ADP99469.1| DNA replication and repair protein recF [marine bacterium HP15] Length = 375 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 89/380 (23%), Positives = 161/380 (42%), Gaps = 22/380 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + FRN +S + F + + G+NG GKT++LEAI +L GR FR + V Sbjct: 1 MALVKFQTENFRNLSSAPVSFSSSFNMLYGENGSGKTSVLEAIGYLGLGRSFRVNRHQAV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADIS-------IKLETRDDRSVRCLQINDVVIRVVDELN 117 G G++ S + + + L+++ +R + L Sbjct: 61 VSHGEQRLTVFGGLDHGLDSRRHGSETDLVHRLGISRDVGQKETMLRVDGEAVRSLSALA 120 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 KHL +S + P + + +G +RR+FLD +VF ++P +R+ RN+ L G Sbjct: 121 KHLPVSVIDPGVFDVVAGGPGKRRQFLDWLVFHVEPSFGSLWQQCQRVTSQRNQTLRNGR 180 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGFLDGKF 236 D + + Q A L +I AR + V++ P L L + Sbjct: 181 LDEALMRVWDHQYATLSERITEARAGTFGRFKLAFEKLVREVEVPWTEGLKLEYYPGWDV 240 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + L L D R + TL GP+R+D+ + + + + S G+QK ++ Sbjct: 241 SRPLAEL-------LVDHRDQERKVGHTLYGPNRADIRLKFQGRPVAETF-SRGQQKTLV 292 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + +A ++S+ G LLD+I+A LDE R L + + Q+F+T ++ + D Sbjct: 293 ILMKIAQGMVLSDM-GKQVTFLLDDINAELDEGHRAMLAIRLQALRCQVFITSIERPMVD 351 Query: 357 SL-----NETAKFMRISNHQ 371 L + + + + Sbjct: 352 QLWPEGNAPDYRLFHVEHGK 371 >gi|332533698|ref|ZP_08409557.1| DNA recombination and repair protein RecF [Pseudoalteromonas haloplanktis ANT/505] gi|332036862|gb|EGI73323.1| DNA recombination and repair protein RecF [Pseudoalteromonas haloplanktis ANT/505] Length = 364 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 159/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRN +L L I G+NG GKT++LEAI +LS G+ FR + + Sbjct: 1 MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTPKHKSI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 F + G + + D+SI + ++ L+I R + EL + + + Sbjct: 61 IAHQQEQFV-----IHGRKTIHDLSIPIGISKTQTGETNLKIQGKASRRISELAQLMPVQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SW 182 + P +F G ERR+FLD +F ++ F ++++ RN LL + Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKTKPKNYFDQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + L +IN R+ I+ + + E L+L L+ F + Sbjct: 176 IKFWDKEFVRLAEEINKLRLAYISRFKQQFFDKMCAE------LTLVRDLEMTFSAGWKE 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E A L + D+ T GPH++D ++ S G+ K++L + + Sbjct: 230 T-ESLADALEQNFERDARQGFTSKGPHKADFSFSVAGNSVENTF-SRGQLKLLLYALKVT 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ----IFMTGTDKSVFDSL 358 LI + T ILL+D++ + L ED + + +++ SQ ++ + +V + + Sbjct: 288 QNSLIESETDKQSILLIDDLPSELGEDTKEKVGQLLAHCSSQIFISSILSESISAVVEPM 347 Query: 359 NETAKFMRISNHQAL 373 + + + + Sbjct: 348 QRELQMFHVKHGNLI 362 >gi|294665501|ref|ZP_06730784.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604704|gb|EFF48072.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 368 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 78/369 (21%), Positives = 146/369 (39%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MHVVRLSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ EG + + + R +++ + + L L + Sbjct: 61 IQQGANDLEVFVEWKEGGGAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQG-AQPRLLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R+ + L ++ P + LS F G Sbjct: 180 AWDNELAESGENLTSRRMRYLERLQDRMVPVADAI-APALGLSALTFAPGWKRHEVS--- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T GPHR+D + + A S G+ K+ + LA A Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWMPSFLALPAKDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 + G P++ LD++ + LD + + + + +Q+ +T T+ + Sbjct: 293 EDFAFERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATETPPGLADAAARLQ 352 Query: 364 FMRISNHQA 372 + + Q Sbjct: 353 QFHVEHGQI 361 >gi|90408444|ref|ZP_01216604.1| recombination protein F [Psychromonas sp. CNPT3] gi|90310428|gb|EAS38553.1| recombination protein F [Psychromonas sp. CNPT3] Length = 360 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 158/372 (42%), Gaps = 14/372 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I +FRN S L F+ Q + GDNG GKT +LEAI FL GR FR + Sbjct: 1 MPITKLVIHQFRNIHSATLHFNKQINVITGDNGSGKTALLEAIYFLGLGRSFRSHLSNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F FA ++ I +K + + L+IN + + +L +HL + Sbjct: 61 ITHEHPEFI-LFAEIDEQGVQVPIGLK---KTRKGESILKINTRIATKLADLTQHLPLQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + SG RR FLD VF DP + +RL++ RN L + + Sbjct: 117 ITPDSINLLSGSPKNRRAFLDWGVFYHDPLFYQTWARIKRLLKQRNAALKQCKTYNE-LQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L +I+ R L LI + + + P + ++ F + Sbjct: 176 LWDNELCFLSTEISDQRQRYFQQLIPLIEKTIA-DFLPEFSIKMSFFC------GWDNTN 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + + D + D T GP ++D+ + S G+ K+ + + LA Sbjct: 229 KSLQQYFIDNFERDKQLGYTTAGPQKADIRFKIGSYPLADVL-SRGQLKLFVYALRLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363 ++N + L+D+ S+ LD+ K+ L + + +Q+F++ DK+ ++L + Sbjct: 288 LFLNNVNNKKCVFLIDDFSSELDQSKQQILAKHIIQSDAQLFISVIDKNHIENLFEQQCS 347 Query: 364 FMRISNHQALCI 375 + + + I Sbjct: 348 VFHVKHGKITNI 359 >gi|90019652|ref|YP_525479.1| RecF protein [Saccharophagus degradans 2-40] gi|123278091|sp|Q21PV3|RECF_SACD2 RecName: Full=DNA replication and repair protein recF gi|89949252|gb|ABD79267.1| DNA replication and repair protein RecF [Saccharophagus degradans 2-40] Length = 367 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 89/373 (23%), Positives = 169/373 (45%), Gaps = 18/373 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 + L + +FRN + + + G+NG GKT++LEAIS L+ R FR Y + Sbjct: 3 HLSNLKVQQFRNLGLVDITPSPTLNLVYGENGSGKTSLLEAISVLAHCRSFRTHKYRRLI 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + + + F+ FA VEG + + ++ E + + ++ + + +L +L + + Sbjct: 63 Q-DTTTAFTVFATVEGSDAFK-VGVQREWSGKSTAK---LDGLSAKSSAQLATNLPVQII 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 + G S RR+F D +VF + + ++ + ++ RN LL S Sbjct: 118 DAHTFALLEGGSKARRKFFDWLVFHVKHEFKTAWANYVKCVKQRNSLLRHDKIAYSDLRP 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A L I+ RVE I L + + + ++ L+L K + Sbjct: 178 WDEQIAGLAATIDECRVECITPLIQAFKALMGECKFADNVDLTLAYQPGWKEGEL----- 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + K+L D T++GPH+SDL + + + + S G+QK V+ + +A A Sbjct: 233 -SFPKQLEQAFARDRKLGYTILGPHKSDLKIT-ANGSPAVEVLSRGQQKAVINALHIAEA 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-----N 359 ++ G P+ LLD++ + LD + L ++++G+Q+F+TG D + S+ N Sbjct: 291 QVYKTQIGRTPVFLLDDMPSELDANHIAILSGWLSNLGAQVFVTGVDANKLASVWPLQKN 350 Query: 360 ETAKFMRISNHQA 372 E K + + Sbjct: 351 EAIKMFHVKQGEV 363 >gi|163838773|ref|YP_001623178.1| recombination protein F [Renibacterium salmoninarum ATCC 33209] gi|189039634|sp|A9WR32|RECF_RENSM RecName: Full=DNA replication and repair protein recF gi|162952249|gb|ABY21764.1| DNA replication and repair protein [Renibacterium salmoninarum ATCC 33209] Length = 398 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 169/399 (42%), Gaps = 43/399 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++++FR+Y L + +F+G NG+GKTN++EA+ +L+ R + + Sbjct: 1 MYLEQLSLTDFRSYQQADLGLEPGVNVFIGSNGLGKTNLVEALGYLASLSSHRVSQDGPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ R + G + +++E R+ R +IN E+ R Sbjct: 61 IRFGAEQALI---RGNLVRGTQRLGLEVEINASRANRA-RINRANPVRAREILGLCRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G RRRFLD ++ ++ PR D+ER+++ RN LL S Sbjct: 117 FAPEDLSLVKGDPGNRRRFLDDLLQSLHPRFAGLRADYERVLKQRNALLKSARGHSRSRQ 176 Query: 181 -------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLS 227 S + A ++ AR++++ L + Q KE + S Sbjct: 177 APSADFLSTIEVWDQHFANHAAQLLSARLKVLEQLKPEMSRAYQELTDGSKELSARYRSS 236 Query: 228 LTGFLDGKFD--------------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 L G+ + D S +L E Y L R+ + TLIGPHR ++ Sbjct: 237 LDGYQEDSDDAAEIHDDEAASLVSASVESLTEHYLLALAAVRQREIERGLTLIGPHRDEV 296 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS---NTTGFAPILLLDEISAHLDEDK 330 + +A + S GE V + + LA ++ G PIL+LD++ A LD + Sbjct: 297 ELGL-GQAPARGYASHGETWSVALALRLASYYVLKADQEIDGADPILVLDDVFAELDSSR 355 Query: 331 RNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 R+ L +V Q+ +T D V L + + +R+S Sbjct: 356 RSKLAHMVAGAE-QVLVTAAVDDDVPAEL--SGRRIRVS 391 >gi|284988633|ref|YP_003407187.1| DNA replication and repair protein RecF [Geodermatophilus obscurus DSM 43160] gi|284061878|gb|ADB72816.1| DNA replication and repair protein RecF [Geodermatophilus obscurus DSM 43160] Length = 399 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 161/388 (41%), Gaps = 25/388 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRN+ + L T+FVG NG GKTN++EA+ +L+ R A A + Sbjct: 1 MYLRHLQLGSFRNWDRVDLALRPGPTVFVGRNGEGKTNLVEAVGYLATMGSHRVAGDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A ++ +++E R+ R +++N + EL ++ Sbjct: 61 VRQGASQAVVRAAL---RREDRELLVEIEINPGRANR-VRVNRAPLPRPRELLGLVKSVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G ERRRFLD ++ + PR D++R+++ RN LL Sbjct: 117 FAPEDLVLVRGDPAERRRFLDDLLVSRTPRLAGVRSDYDRVLKQRNALLKTARMARGDAL 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--------- 231 + + + +LG ++ AR+ ++ L+ + ++ G+ Sbjct: 177 ATLDVWDGHLVDLGGQLLAARLRLVADLAPHVARAYAGVAGADAAVAALGYASTVPLAGD 236 Query: 232 ----LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 +G L +++ + R + TL+GPHR DL++ Sbjct: 237 GTPVAEGTPLPDAAELSAALRERVAERRGDEVDRGMTLVGPHRDDLVISLGSTPAK-GFA 295 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + + L L+ G PIL+LD++ A LD D+R AL + + Sbjct: 296 SHGESWSLALALKLGCFELL-RADGDEPILVLDDVFATLDADRRAALATVARSAEQSLVT 354 Query: 348 TGTDKSVFDSLNETAKFMRISNHQALCI 375 V L + ++++ QA+ + Sbjct: 355 AAVLDDVPAEL--RSTVVQVAGGQAVPL 380 >gi|86131710|ref|ZP_01050307.1| DNA replication and repair protein RecF [Dokdonia donghaensis MED134] gi|85817532|gb|EAQ38706.1| DNA replication and repair protein RecF [Dokdonia donghaensis MED134] Length = 363 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 162/376 (43%), Gaps = 22/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N+ S FDA+ FVG+NGVGKTN+L+AI LS G+ + + Sbjct: 1 MILKSLSLINYKNFESKAFTFDAKINCFVGNNGVGKTNVLDAIYHLSFGKSYFNPVTSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FF E E + + + + ++ N + + L + Sbjct: 61 INHNAD-FFVIDGLYEKKERDEKVVV---SAKKGQKKVIKRNAKIYDRFADHIGFLPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + + S RR+F+D ++ D + ++ + +++ RN LL F++ Sbjct: 117 ISPADRDLITEGSDTRRKFIDGVISQSDKSYLSDLLGYSKILSQRNALLKYFAANNTFNT 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G I R + + + + E + + ++LT ++ S Sbjct: 177 DTLAVYNEQLEGFGTPIFEKRQQFLERFAPIFNERYKAISGDTENVTLT------YNSSL 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + L + D + T +G H+ DL + + GS G+QK L+ + Sbjct: 231 NTMP--LKHSLTNALAKDRSLQYTSVGIHKDDLQFEINGHPVK-KFGSQGQQKSYLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS----VF 355 LA I +G P+LLLD+I LDE++ + +V T+ Q+F++ T V Sbjct: 288 LAQFDFIKQESGTTPLLLLDDIFDKLDENRVQHIIELVNTNDFGQLFISDTHPERTENVV 347 Query: 356 DSLNETAKFMRISNHQ 371 ++++ + + Q Sbjct: 348 KKIHQSYELFHLERAQ 363 >gi|118467917|ref|YP_884426.1| recombination protein F [Mycobacterium smegmatis str. MC2 155] gi|152060497|sp|A0QND8|RECF_MYCS2 RecName: Full=DNA replication and repair protein recF gi|152060498|sp|P0C561|RECF_MYCSM RecName: Full=DNA replication and repair protein recF gi|1321896|emb|CAA63251.1| recF [Mycobacterium smegmatis] gi|118169204|gb|ABK70100.1| DNA replication and repair protein RecF [Mycobacterium smegmatis str. MC2 155] Length = 384 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 85/389 (21%), Positives = 160/389 (41%), Gaps = 25/389 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FR++A + L + T+FVG NG GKTN++EA+ + + R A+ A + Sbjct: 1 MFARHLGLTDFRSWARVDLDLEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V ++++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGAERAIVSTIVVNEG---RELAVDLEITSGRANKA-RLNRSPVRSAREILGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G +RRR+LD + P D+++++R R LL D Sbjct: 117 FSPEDLSLVRGDPGDRRRYLDELATTRRPALAGVRADYDKVVRQRTALLKTAAGARYRGD 176 Query: 180 SS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTG 230 S + +A G + +RV+++ L + + Q + + S+ Sbjct: 177 RSVIDTLEVWDGHLAAHGAALVASRVKLVEELQPEVEKAYQLLAPASRPAAIRYRSSVEA 236 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D +S + L R + L+GPHR DL + D+ S G Sbjct: 237 IEDAPGPESVEFYEAALLDALARRRDAELERGVCLVGPHRDDLELRLGDQPAK-GFASHG 295 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349 E + + + L L+ + G P+LLLD++ A LD +R AL V Q+ +T Sbjct: 296 ESWSMALALRLGAYELLC-SDGVEPVLLLDDVFAELDTSRRRALA-TVAGSAEQVLVTAA 353 Query: 350 TDKSVFDSLNET---AKFMRISNHQALCI 375 + + + + + + + + Sbjct: 354 VGEDIPEDWDARRVEIRMVEDDGGRVSMV 382 >gi|311742166|ref|ZP_07715976.1| recombination protein F [Aeromicrobium marinum DSM 15272] gi|311314659|gb|EFQ84566.1| recombination protein F [Aeromicrobium marinum DSM 15272] Length = 373 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 89/379 (23%), Positives = 169/379 (44%), Gaps = 20/379 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FR+Y L L A FVG NG GKTN++EA+ +L+ R A+ A + Sbjct: 1 MHVARLALHDFRSYTELDLELSAGPVAFVGANGQGKTNLVEAVDYLARLDSHRVAADAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ R E + +++E RS R ++N + ++ LR Sbjct: 61 VRAGAE---RAVVRAEVVREDRRALLEVEITPGRSNRA-RVNRGDLPRARDIVGILRTVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---FDSS 181 P + G +RRRFLD ++ PR D++R+++ RN LL G D S Sbjct: 117 FSPEDLALVKGDPSDRRRFLDALLVMRLPRLAGVKADYDRVLKQRNALLKSGRNRQVDIS 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFD-- 237 + ++A LG ++ + R+ +++ L + + ++ + +T D Sbjct: 177 TLDIWDDKLATLGAELLVHRLTLLDDLGPHLAQAYREVATLAAADRRDVTAVYRSATDGV 236 Query: 238 ---QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + ++E + + + R+ + +L+GPHR ++++ D + S GE Sbjct: 237 TGTRDVAEIREALLRAVAERRRDELDRGISLVGPHRDEVVLAVGDLPAK-GYASHGESWS 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + + LA L+ + P+L+LD++ A LD +R+ L +V Q+ +T Sbjct: 296 LALALRLASFELLRSEDDD-PVLILDDVFAELDAGRRDHLAALVGSAE-QVLVTAAVAAD 353 Query: 354 VFDSLNETAKFMRISNHQA 372 V L T + R+++ Sbjct: 354 VPAGL--TGRRFRVADGTV 370 >gi|301629590|ref|XP_002943921.1| PREDICTED: DNA replication and repair protein recF-like [Xenopus (Silurana) tropicalis] Length = 367 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 91/373 (24%), Positives = 158/373 (42%), Gaps = 15/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++++ RN + + I G NG GKT++LEAI L R FR A V Sbjct: 1 MSLSRVSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + F +VE EG S+ + RD + ++I+ R +L + L + Sbjct: 61 IQYEQLAC-TVFGQVELAEGGHS-SLGIS-RDRQGEFQIRIDGQNARSAAQLAEILPLQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P R+ G RR+FLD VF ++PR ++ +R RN L G D++ + Sbjct: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ +I+ R I AL + E E L+L+ + D+ A+ Sbjct: 178 AWDRELCLASAEIDEYRRAYIKALKPVF-EQTLSELLELEGLTLSYYRGWDKDRELSAV- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L + D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 ------LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNET 361 L+S I L+D++ + LDE R AL R++ D+ Q+F+T D + Sbjct: 289 HLVSQARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELLREGWQTETP 348 Query: 362 AKFMRISNHQALC 374 + + Sbjct: 349 VALFHVEQGRITQ 361 >gi|197120424|ref|YP_002132375.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. K] gi|226737767|sp|B4UJV1|RECF_ANASK RecName: Full=DNA replication and repair protein recF gi|196170273|gb|ACG71246.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. K] Length = 372 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 9/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L++ +FRN A++ L + T+ +G+NG GKTN+LEAI FL+ + R A++ Sbjct: 1 MKLLSLHVQDFRNLAAVALAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + EG G+ +++++ + + R +D+ + L Sbjct: 61 VRFGADQG-AVAGDFEGPGGVRRVAVQVAAGGRTATLDGKALGSGAR-LDDYFEGLASVC 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + RRRFLDR F P ++ R +R RN L G + + Sbjct: 119 FSPDDLLLVKAGPDGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRAGPAEVE--A 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFC 241 S + G ++ + R E++ L+ + + + P L+ Sbjct: 177 SFREPLVRAGARLLVRRRELVAELAPRLQAAFAEISGPEAPEAHLAYRAAGGVDVAHPEA 236 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + A L + D T GPH DL++ K + +GS G+Q+ +++ + + Sbjct: 237 EVAARLAHALEARLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLALKI 295 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360 A + G P+LLLD++S+ LD K L + + +Q F+T TD+ + + + Sbjct: 296 AEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTSTDRRLIEPAAGP 355 Query: 361 TAKFMRISNH 370 F + + Sbjct: 356 DTAFFEVRSG 365 >gi|332798027|ref|YP_004459526.1| DNA replication and repair protein recF [Tepidanaerobacter sp. Re1] gi|332695762|gb|AEE90219.1| DNA replication and repair protein recF [Tepidanaerobacter sp. Re1] Length = 364 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 163/370 (44%), Gaps = 13/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN+ L L F IF GDN GKTN+LEAI F++ R R +V Sbjct: 1 MYLYNLRLYDFRNFLELDLEFKNGINIFYGDNAQGKTNLLEAIYFITELRATRAFREQEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P F G D + + + V+ + EL+ + + Sbjct: 61 IRYDQPLAF-LKGLFSTKAGDIDRQVTIYRNQKKEVKEGEN---KKSRWSELDPSISAVY 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P + G RRRF+D +++ I P + + ++R++ RN LL Sbjct: 117 FSPEDIDLVKGEPSLRRRFIDNLIYRIRPSFYKYLQGYQRVLTQRNTLLKTIKIKPGMTK 176 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q++ELG ++ R++M+ +SSL +Y + L ++ + F + Sbjct: 177 TLDPWDEQLSELGSQLINERLKMLQRISSLSQDYFKTFTHKRNDLRISYRSEIDFS-NPE 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +K +Y KL R+ D T +GPHR D+ K I + S G+Q++ ++ + Sbjct: 236 LIKADYKNKLILNREKDINRSFTSVGPHRDDIDFFIDGKNIK-HYASQGQQRLTVLCLMF 294 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNE 360 A L+ G PILLLD++ + LD +R + + Q+F+T TD K + + + E Sbjct: 295 AQRNLLYTEKGEYPILLLDDVMSELDIHRRQLI---LGQENHQVFITTTDLKFIPEEILE 351 Query: 361 TAKFMRISNH 370 + I Sbjct: 352 KSFLYPIKAG 361 >gi|86738727|ref|YP_479127.1| recombination protein F [Frankia sp. CcI3] gi|86565589|gb|ABD09398.1| DNA replication and repair protein RecF [Frankia sp. CcI3] Length = 399 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 90/404 (22%), Positives = 156/404 (38%), Gaps = 45/404 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y +L L FVG NG GKTN++EAIS+++ R A A + Sbjct: 1 MHLTHLSLVDFRSYPALDLTLGPGVATFVGGNGQGKTNVIEAISYVATLASHRVAGDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V G +++E ++ R ++N + ++ L Sbjct: 61 VRDGASRAVIRARIVRGDRAAL---VEIEIVPGKANRA-RLNRAPVARPRDIVGLLCTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P + G +RR+FLD ++ A PR + D++R+++ R+ LL G Sbjct: 117 FAPEDLALVKGDPAQRRQFLDELLIARTPRMAAVLADYDRVLKQRSTLLRTAGTARRAGG 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSS---------------LIMEYVQKENF 221 D + +A G ++ AR+ +++AL ++Y Sbjct: 177 QGDLRTLDVWDGYLAAHGAEVLAARLALVDALRPAVAAAYEAVAGAESATALDYRSSVTL 236 Query: 222 PHI------------KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 P I L E L R + TL+GPH Sbjct: 237 PDILHASGPPGPPGQPEQPGAGRPDPAAPDRTMLAEAIRADLEAARPREVERGMTLVGPH 296 Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 R DL++ + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 297 RDDLLLSINGLP-ARGYASHGESWSLALALKLASFDLL-RADDREPVLLLDDVFAELDTR 354 Query: 330 KRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372 +R L +V Q+ +T + V L T ++ + Sbjct: 355 RRGRLAELVASAE-QVLVTAAVETDVPTEL--TGVRYAVAGGEV 395 >gi|152994046|ref|YP_001338881.1| recombination protein F [Marinomonas sp. MWYL1] gi|189039628|sp|A6VR67|RECF_MARMS RecName: Full=DNA replication and repair protein recF gi|150834970|gb|ABR68946.1| DNA replication and repair protein RecF [Marinomonas sp. MWYL1] Length = 368 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 91/352 (25%), Positives = 164/352 (46%), Gaps = 13/352 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+IS RN +S+R Q + VG NG GKT++LEAI LS GR FR + Sbjct: 1 MPLVRLDISHVRNLSSVRFEPSPQVNVIVGKNGSGKTSVLEAIHLLSFGRSFRSHKHKTY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + FA++ +G + I + L+ D + ++I + V EL + L + Sbjct: 61 IQHENDACI-VFAQLHQKQG-SPIRVGLQRHRDGQI-DVRIQGQRAQSVIELAERLPVQL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P R+ G RR+F+D F D + +++ ++ RN LL G S + Sbjct: 118 INPDAFRLLEGSPSIRRQFIDWGAFHFDKDFIQAWRGWQKALKQRNTLLRRGKISLSLLA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ LG ++N +R + L+ ++ + + +SL F + Sbjct: 178 AFDQELIRLGEQVNQSRKAYVEKLTPHFVKVLSLLT-TELSVSLQFFQGW-------DAQ 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + A + GR+ D T GP R+DL V S G+QK+V+ + +A Sbjct: 230 KNLAMAVEAGRERDIELGYTHTGPQRADLRVKTATGDALDTL-SRGQQKLVVSALKIAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +L+ + G + L+D++ A LD + R L +++ + SQIF+T + D Sbjct: 289 QLLIDM-GRPLVFLVDDLPAELDANHRQKLCQLLESLNSQIFITSVEPDTTD 339 >gi|213961968|ref|ZP_03390233.1| RecF protein [Capnocytophaga sputigena Capno] gi|213955321|gb|EEB66638.1| RecF protein [Capnocytophaga sputigena Capno] Length = 360 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 83/354 (23%), Positives = 152/354 (42%), Gaps = 18/354 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ ++N S F FVGDNGVGKTN+L+AI L + + S Sbjct: 1 MFLKQISVVNYKNIPSQTYAFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F+ + + I L+ + ++ N + + + Sbjct: 61 VRHGEE-FYLIEGQFQNETREEQIVCSLKKGQKKVMKH---NGKAYERLADHIGKYPMVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 + PS + S RR+FLD ++ D + ++ + R++ RN LL + G F Sbjct: 117 ISPSDRDLIVEGSETRRKFLDSVISQTDRAYLELLLRYNRILLQRNTLLKQMAENGVFSV 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S + Q+A LG + R + + E + +++L + + QS Sbjct: 177 ETLSIYDEQLAPLGQHLYEKRRAFMEEFLPVFSEQYAYISGGKERVNLQY--ESQLHQS- 233 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + A L + + D ++ T G H+ DL+ + + +GS G+QK L+ + Sbjct: 234 -----DLATLLRENAERDRSAQYTTSGIHKDDLLFEIEGFPMK-KYGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTDKS 353 L+ +++ G PI+LLD+I LD+ + L ++VT Q+F+T T Sbjct: 288 LSQFKILQQELGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITDTHSQ 341 >gi|325961454|ref|YP_004239360.1| DNA replication and repair protein RecF [Arthrobacter phenanthrenivorans Sphe3] gi|323467541|gb|ADX71226.1| DNA replication and repair protein RecF [Arthrobacter phenanthrenivorans Sphe3] Length = 403 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 93/395 (23%), Positives = 164/395 (41%), Gaps = 44/395 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++++FR+YA + L T+ VG NG+GKTN++EAI +L+ R +S A + Sbjct: 1 MYLEHLSLTDFRSYAQVDLALGPGVTVLVGYNGIGKTNLMEAIGYLATMSSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V G + ++LE R+ R +IN +L + Sbjct: 61 LRFGTDRALVRARLVRGGQITI---LELEINAGRANRG-RINRSNPVRARDLLGICQTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------F 178 P + G RRRFLD ++ ++ P H D++R+++ RN LL Sbjct: 117 FAPEDLALVKGDPSNRRRFLDELLASLVPHHAATRSDYDRVLKQRNALLKSARAGKFTSA 176 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKF 236 + + MA G ++ AR+E++ L + + L + Sbjct: 177 HEATLDVWDQHMARAGAELLHARLELVERLRPHLARAYAQLTDESKPADAVYRSTLQNQM 236 Query: 237 DQS--------------------------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270 D L E Y + + R+ + +L+GPHR Sbjct: 237 DDDGAALVGAGGTAAGGASAGAEDLLSFGVEQLTERYVQAFAESRRKELERGISLVGPHR 296 Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLD 327 +L + +A + S GE + + + LA ++ + T G APIL+LD++ A LD Sbjct: 297 DELEL-VLGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELD 355 Query: 328 EDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361 +R L IV+ Q+ +T D + + L+ Sbjct: 356 VQRRRKLAAIVSGAE-QVLVTAAVDADIPEELSGR 389 >gi|298208521|ref|YP_003716700.1| putative DNA replication and repair protein [Croceibacter atlanticus HTCC2559] gi|83848444|gb|EAP86313.1| putative DNA replication and repair protein [Croceibacter atlanticus HTCC2559] Length = 359 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 157/373 (42%), Gaps = 24/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N+ S FD++ VG NG+GKTN+L++I LS G+ + + Sbjct: 1 MHLKQLSLINYKNFESETFEFDSKINCLVGANGIGKTNVLDSIYHLSLGKSYFNPITSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + F ++G D + K+ R + ++ N E L + Sbjct: 61 IKHHED-----FFVIDGEFVKQDRTEKIVVSAKRGQKKVIKRNSKAYERFSEHVGLLPVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 + P+ + + S RR+F+D ++ D + +I + +++ RN LL F+ Sbjct: 116 IISPADRDLITEGSDTRRKFMDGIISQNDKTYLDNLISYNKVLAQRNALLKYFAANRTFE 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 SS Q++ +I R + + + E Q + +++++ K Sbjct: 176 SSTLEVYNEQLSNYASEIFETRTLFLESFIPIFKERYQTISNNKEQVTISYKSQLK---- 231 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 K A + + D + T +G H+ DL + I GS G+QK L+ + Sbjct: 232 ----KGNLASLFEERLQKDLQRQYTTVGTHKDDLDFGIENHPIK-RFGSQGQQKSFLIAL 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358 LA I + PILLLD++ LDE + + +V+ Q+F++ T +++ Sbjct: 287 KLAQYDFIKAKSKVNPILLLDDVFDKLDEQRVEQIVSLVSTGELGQLFISDTHPDRTEAV 346 Query: 359 ----NETAKFMRI 367 + K R+ Sbjct: 347 VKNTAQDYKMFRL 359 >gi|294627436|ref|ZP_06706020.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598257|gb|EFF42410.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 368 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 78/369 (21%), Positives = 146/369 (39%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MHVVRLSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ EG + + + R +++ + + L L + Sbjct: 61 IQQGANDLEVFVEWKEGGGAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQG-AQPRLLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R+ + L ++ P + LS F G Sbjct: 180 AWDNELAESGENLTSRRMRYLERLQDRMVPVADAI-APALGLSALTFAPGWKRHEVS--- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T GPHR+D + + A S G+ K+ + LA A Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWMPSFLALPGKDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 + G P++ LD++ + LD + + + + +Q+ +T T+ + Sbjct: 293 EDFAFERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATETPPGLADAAARLQ 352 Query: 364 FMRISNHQA 372 + + Q Sbjct: 353 QFHVEHGQI 361 >gi|87199175|ref|YP_496432.1| recombination protein F [Novosphingobium aromaticivorans DSM 12444] gi|87134856|gb|ABD25598.1| DNA replication and repair protein RecF [Novosphingobium aromaticivorans DSM 12444] Length = 357 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 142/370 (38%), Positives = 194/370 (52%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FRN+A+ RL + VG+NG GKTN+LEAIS L+PGRG RRA A++ Sbjct: 1 MSLTRLTLRDFRNHAATRLEGMRAFNVLVGENGAGKTNVLEAISLLAPGRGLRRAQPAEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ A +E +G I D R ++IN V L + L I+W Sbjct: 61 AGREGPGGFAIAAEME--DGAVQIGTATSP-DAPGRRSVRINGVEG-PAARLAEWLSITW 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183 L P+MDRIF+ + RRRFLDR+V A DP H R +E +R RNRLL E D W Sbjct: 117 LTPAMDRIFAESAGSRRRFLDRLVLARDPGHARNATRYETALRERNRLLGEVAEPDPLWL 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 IEAQMAE G + AR E++ LS ++E V + F L + D Sbjct: 177 DGIEAQMAETGAAMAAARTELVADLSR-VLETVPDQPFARPSLRYASEVPPDAD------ 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L +GR+ D + R+LIGPHR DL V K A STGEQK +L+ I LAH Sbjct: 230 --GLRAMLREGRRRDRAAGRSLIGPHRDDLAVLLAAKNAPAADCSTGEQKAMLIAIVLAH 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 A L + +LLLDEI+AHLD +R ALF + G+Q++MTGT+ + F + + Sbjct: 288 AGLTAGE--RPRLLLLDEIAAHLDPVRRGALFERLATSGAQVWMTGTEMAPFAQIAGESA 345 Query: 364 FMRISNHQAL 373 + + Sbjct: 346 IWSVRDGAVF 355 >gi|332188891|ref|ZP_08390596.1| DNA replication and repair RecF family protein [Sphingomonas sp. S17] gi|332011073|gb|EGI53173.1| DNA replication and repair RecF family protein [Sphingomonas sp. S17] Length = 347 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 138/360 (38%), Positives = 197/360 (54%), Gaps = 17/360 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +++FRN+A L L A + G+NG GKTN+LEA+S L+PGRG RRA+ + + R Sbjct: 2 LTRLVLTDFRNHADLALNPGAGFVVLTGENGAGKTNVLEAVSLLAPGRGLRRAALSAMAR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F A + G D+ I R + + L L + WL Sbjct: 62 QGGKGGFGVAATLNG-----DVEIATGALPSAPERRVVRVQGAGASANALADWLSVLWLT 116 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185 P+MDR+F + ERRRFLDR+V A+ P H ++ MR RNRLL ++G D W S+ Sbjct: 117 PAMDRLFVEPASERRRFLDRLVLALAPAHGMHATRYDAAMRERNRLLASDGPVDPDWLSA 176 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +EA+M E G ++ ARV + AL + E V F L+L G Sbjct: 177 LEARMVEHGAALDAARVAAVAALDQRLEE-VPDSVFARASLALEG---------EAVDPA 226 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 +A L GR+ D+ + RTL+GPHR+DL+V + K A STGEQK +L+GI LAHA Sbjct: 227 AFAHALAMGRRRDAAAGRTLVGPHRADLLVTHVAKGQAAALCSTGEQKALLLGIVLAHAD 286 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L++ G AP+LLLDE++AHLD +R ALF + G Q++MTGT+ ++F + A + Sbjct: 287 LVTERRGAAPVLLLDEVAAHLDPSRRAALFERLAGRG-QVWMTGTEPALFVDVPGEATRI 345 >gi|238061916|ref|ZP_04606625.1| recombination protein F [Micromonospora sp. ATCC 39149] gi|237883727|gb|EEP72555.1| recombination protein F [Micromonospora sp. ATCC 39149] Length = 377 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 21/370 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + + + I +G NG GKTN++EA+ +++ R A+ A + Sbjct: 1 MYVRRLELVDFRSYERVGVDLEPGPNILIGANGTGKTNLVEALGYVATLDSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ S A V ++ ++LE ++ R ++ R ++ LR+ Sbjct: 61 VRLGATSAVIRCAVVHDG---RELLVELEIVPGKANRA-RLGRSPARRARDVLGALRLVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRR+LD ++ + PR+ D+ER+++ RN LL Y Sbjct: 117 FAPEDLELVRGDPAERRRYLDDLLVSRQPRYAGVRADYERVIKQRNALLRTSYLARKTGG 176 Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 D S + + +A G ++ R+E++ AL + + + Sbjct: 177 TRGGDLSTLAVWDTHLARHGAELLAGRLELVAALGPHVTKAYDAVAAGRGAAGIAYRPSV 236 Query: 235 KFDQSFCA---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + L E L + R + TL+GPHR DL + + S GE Sbjct: 237 ELTDPVADRAALAEALLAALAESRSAEVERGTTLVGPHRDDLALTLGPLPAK-GYASHGE 295 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350 + + LA L+ + G P+L+LD++ A LD +R L +V SQ+ +T Sbjct: 296 SWSFALALRLAGYDLL-RSDGIEPVLVLDDVFAELDVGRRERLAGLVGGA-SQLLVTCAV 353 Query: 351 DKSVFDSLNE 360 D V +L Sbjct: 354 DDDVPAALRG 363 >gi|296447171|ref|ZP_06889102.1| DNA replication and repair protein RecF [Methylosinus trichosporium OB3b] gi|296255336|gb|EFH02432.1| DNA replication and repair protein RecF [Methylosinus trichosporium OB3b] Length = 382 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 141/371 (38%), Positives = 207/371 (55%), Gaps = 4/371 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +++ L +++FR+YA+L + + G+NG GKTNILEA+S SPGRG R A A+ Sbjct: 11 RVRRLRLADFRSYAALDIAILSPLVALTGENGAGKTNILEALSLFSPGRGLRGAEIAECA 70 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123 R F+ ++ + L + E + R +I+ V + HLR Sbjct: 71 RRQGAGGFAVSIDLDSDDRLMQLGHGFEIGAPGETPARRFRIDRVPVSSARAFADHLRPL 130 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P+MD +F+G + +RRRFLDR+ ++D H R ER +R RNRLL E DS W Sbjct: 131 WLTPAMDGLFAGSAGDRRRFLDRLTMSVDAEHGARAARLERALRNRNRLLAEEQADSRWL 190 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 ++ E ++A L V + AR + + L +LI E FP +LS+ G L+ ++ Sbjct: 191 TAAEREIAALAVAVAAARRDTVERLRALIAAERDDASPFPFAELSIDGELERLVGEEPAL 250 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +++ Y L R+ D+ + RTL GP SDL+V + K STGEQK +L G+ L Sbjct: 251 RVEDHYRSVLAAMRRRDAAAGRTLSGPQASDLLVRHGPKDEAARACSTGEQKALLTGLVL 310 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHARL++ TTG AP+LLLDEI+AH D +R ALF + IG Q++MTG D VFDSL Sbjct: 311 AHARLVAATTGTAPLLLLDEIAAHFDALRREALFEALARIGGQVWMTGADPRVFDSLTGR 370 Query: 362 AKFMRISNHQA 372 A +R++ + Sbjct: 371 ADLLRVTPGRV 381 >gi|254521265|ref|ZP_05133320.1| DNA replication, recombinaison and repair protein [Stenotrophomonas sp. SKA14] gi|219718856|gb|EED37381.1| DNA replication, recombinaison and repair protein [Stenotrophomonas sp. SKA14] Length = 364 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 154/372 (41%), Gaps = 10/372 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ L + + R +++ L+ + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MQIRRLALHQLRRFSAADLLPQPGLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + E K R +++ + + L L + Sbjct: 61 VRQGQEALEIFVEWDEQRANHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQGGPSR-MLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R + L + + P + + + + + Sbjct: 180 TWDHELAEAGEPLTSRRQHYLERLQQRTVS-LAATLAPQLGIQ-----GLELSPGWRRHE 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T +GPHR+D VD+ A S G+ K+ + LA A Sbjct: 234 LPLADALLLARERDRQAGYTSVGPHRADWSVDFHSIPGRDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 + G P++ LD++++ LD + + + + D +QIF+T T+ S L + + Sbjct: 293 EDYAEQRGEWPVIALDDLASELDRTHQARVLQRLLDGPAQIFITATETPSALQDLADITR 352 Query: 364 FMRISNHQALCI 375 + + Q + + Sbjct: 353 -FHVEHAQIVAV 363 >gi|83588879|ref|YP_428888.1| DNA replication and repair protein RecF [Moorella thermoacetica ATCC 39073] gi|97180817|sp|Q2RMJ4|RECF_MOOTA RecName: Full=DNA replication and repair protein recF gi|83571793|gb|ABC18345.1| DNA replication and repair protein RecF [Moorella thermoacetica ATCC 39073] Length = 370 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 94/369 (25%), Positives = 159/369 (43%), Gaps = 20/369 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + FR+Y L I G N GKTN+LEAI +L+ R FR+ + Sbjct: 6 LQQLQLINFRSYKCLTWDCRPGLNIIFGPNAAGKTNLLEAIGYLALARSFRQQQDQQLLT 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ SF +V G+ I+L + + L IN R++ EL + + Sbjct: 66 WGASSF-----QVRGLCHSNGEKIELVINYQQHNKRLTINGNRNRLI-ELLGIFPVIYFG 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183 P + G RR FLDR + D + R + D+ R++ RN LL G Sbjct: 120 PDDLHLLKGGPAYRRHFLDREISMGDRLYCRNLQDYRRILFQRNLLLRAIKAGRGKEGEL 179 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+ G I R + +L+ + + +L+L + A Sbjct: 180 EPWDIQLLATGKAICEKRSCFLQSLAPRVAATYRDMAGGE-ELALIY-------RPGVAS 231 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +EE+A++L GR+ + + TL GPHR D D S G+Q+ +++ + LA Sbjct: 232 QEEWAERLKVGREREVQAGMTLWGPHRDDFTFTL-DGHEARYFASQGQQRAIVLALKLAE 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETA 362 AR P+LLLD++ + LDE + AL ++ Q F+T T+ + + L + + Sbjct: 291 ARYYRELLHVMPVLLLDDVFSELDEAHQGALLELLAGAD-QAFLTTTEVGLLPARLIQRS 349 Query: 363 KFMRISNHQ 371 ++ + Sbjct: 350 HLWELARGR 358 >gi|255530448|ref|YP_003090820.1| DNA replication and repair protein RecF [Pedobacter heparinus DSM 2366] gi|255343432|gb|ACU02758.1| DNA replication and repair protein RecF [Pedobacter heparinus DSM 2366] Length = 367 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 91/377 (24%), Positives = 152/377 (40%), Gaps = 22/377 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + F+NY + F FVGDNG GKTN+L+AI +L +G+ Sbjct: 1 MWLKNITLLNFKNYTDANVSFSKTVNAFVGDNGAGKTNLLDAIHYLCLCKGYFNPIDTQQ 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G F + E I+ ++ + + N + + Sbjct: 61 IKAGQD-LFLIQGDFDRQEKNEKITCGVKRNQKKQFKR---NKKEYDKLANHIGLFPLVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 + P I S ERRRF+D ++ D + +I + R + RN LL + +D Sbjct: 117 ISPYDTNIIMEGSEERRRFMDNVISQTDTNYLDELILYNRHLLNRNALLKQIAVTRSYDP 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G+KI R + + L +Y Q ++SL Sbjct: 177 TLLEIYNDQLVASGLKIYAKRQQFMIEFIPLFDKYYQFLTEDQERVSLQYQSQLND---- 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + L + D + RT G H+ +LI D A+ GS G+QK L+ + Sbjct: 233 ----AAFEQLLQQSVEKDKVLERTTTGIHKDELIFTISDMALK-KFGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS----VF 355 LA + GF P+LLLD+I LD+ + + L +V+ QIF+T T K VF Sbjct: 288 LAQYAYLQKYKGFKPLLLLDDIFDKLDDKRMHKLMEMVSHHDFGQIFITDTGKERVLAVF 347 Query: 356 DSLNETAKFMRISNHQA 372 + + ++N Sbjct: 348 NKIQVPVTLFEVNNGAI 364 >gi|315125114|ref|YP_004067117.1| gap repair protein [Pseudoalteromonas sp. SM9913] gi|315013627|gb|ADT66965.1| gap repair protein [Pseudoalteromonas sp. SM9913] Length = 364 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 160/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRN +L L I G+NG GKT++LEAI +LS G+ FR + + + Sbjct: 1 MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGCGKTSLLEAIYYLSHGKSFRTSKHKSI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 F + G + L D+SI + ++ L+I R V EL + + + Sbjct: 61 IAHQQDQFV-----IHGRKALYDLSIPIGISKTQAGETNLKIQGKASRKVSELAQLMPVQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SW 182 + P +F G ERR+FLD +F ++ F ++++ RN LL + Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKSKPKNYFDQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + L +IN R+ I + + E L+L L+ F+ + Sbjct: 176 IKFWDKEFVRLAEQINKLRIAYITRFKQQFFDKMCAE------LTLIRDLEISFNAGWKE 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E L + DS T GPH++D ++ S G+ K++L + + Sbjct: 230 -SESLCDALEQSFERDSRQGFTSKGPHKADFSFSVAGSSVENVF-SRGQLKLLLYALKVT 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ----IFMTGTDKSVFDSL 358 LI + T ILL+D++ + L ED + + +++T SQ ++ + +V + + Sbjct: 288 QNSLIESETDKQSILLIDDLPSELSEDTKEKVGQLLTHCSSQIFISSILSESISAVVEPM 347 Query: 359 NETAKFMRISNHQAL 373 K + + + Sbjct: 348 QRELKMFHVKHGNLI 362 >gi|21229481|ref|NP_635398.1| recombination protein F [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766355|ref|YP_241117.1| recombination protein F [Xanthomonas campestris pv. campestris str. 8004] gi|25453248|sp|Q8PEH3|RECF_XANCP RecName: Full=DNA replication and repair protein recF gi|81307651|sp|Q4V0S6|RECF_XANC8 RecName: Full=DNA replication and repair protein recF gi|21110941|gb|AAM39322.1| DNA replication and repair RecF protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571687|gb|AAY47097.1| DNA replication and repair RecF protein [Xanthomonas campestris pv. campestris str. 8004] Length = 368 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 79/370 (21%), Positives = 147/370 (39%), Gaps = 9/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ + + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G E + + + R +++ + + L L + Sbjct: 61 IRQGGQDLEIFVEWRERAGDSTERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPQMLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R++ + L ++ P + LS F G Sbjct: 180 AWDHELAESGETLTSRRLQYLERLQERLVPVATAI-APSLGLSALTFAPGWRRHEVS--- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T GPHR+D + A S G+ K+ + LA A Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ G PI+ LD++ + LD + + + + +Q+ +T T+ +T + Sbjct: 293 EDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATELPPGLADAGKTLR 352 Query: 364 FMRISNHQAL 373 + + Q + Sbjct: 353 RFHVEHGQLV 362 >gi|226942173|ref|YP_002797246.1| recombination protein F [Azotobacter vinelandii DJ] gi|259563355|sp|C1DFU4|RECF_AZOVD RecName: Full=DNA replication and repair protein recF gi|226717100|gb|ACO76271.1| DNA replication and repair protein ,RecF [Azotobacter vinelandii DJ] Length = 365 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 152/374 (40%), Gaps = 18/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + ++ RN + L + I G NG GKT++LEAI L R FR + V Sbjct: 1 MSLGRVTVTAVRNLHPVTLNPSPRINILYGPNGSGKTSLLEAIHLLGLARSFRSQRLSPV 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + P+ + F +V +G ++ + R+ ++I+ +R +L + L + Sbjct: 61 IQHEQPAC-TVFGQVLWNDGRVRNLGV---ARNRLGELQIRIDGQNVRSAAQLAESLPLQ 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++ R + +R RN L G D Sbjct: 117 LINPDSFRLLEGAPKVRRQFLDWGVFHVEQRFLPAWHRLQTALRQRNSWLRHGRIDPVSQ 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I L + E V E L+L+ + ++S + Sbjct: 177 AAWDRELCLASEEIDSYRRSYIQVLKPVF-ESVLHELVELDGLTLSYYRGWDRERSLGEV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L D T GP R+DL + S G+QK+V+ + +A Sbjct: 236 -------LAASLPRDQQLGHTQAGPQRADLRLRLAAHN-AADLLSRGQQKLVVCALKIAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360 L+ I L+D++ + LDE R AL R++ ++ Q+F+T D + Sbjct: 288 GHLVDRAR-RECIYLVDDLPSELDEQHRRALCRLLEELHCQVFITCVDLEALREGWRTDT 346 Query: 361 TAKFMRISNHQALC 374 + + Sbjct: 347 PVALFHVEQGRITQ 360 >gi|258542324|ref|YP_003187757.1| recombination protein F [Acetobacter pasteurianus IFO 3283-01] gi|256633402|dbj|BAH99377.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-01] gi|256636461|dbj|BAI02430.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-03] gi|256639514|dbj|BAI05476.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-07] gi|256642570|dbj|BAI08525.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-22] gi|256645625|dbj|BAI11573.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-26] gi|256648678|dbj|BAI14619.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-32] gi|256651731|dbj|BAI17665.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654722|dbj|BAI20649.1| DNA replication and repair protein RecF [Acetobacter pasteurianus IFO 3283-12] Length = 382 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 133/366 (36%), Positives = 196/366 (53%), Gaps = 4/366 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +S FRNY L DA + G+NG GKTN+LEA+S LSPGRG R A Sbjct: 13 RLLKLTLSNFRNYERLAWSPDASLLVLTGENGSGKTNLLEAVSLLSPGRGLRAAPLTQFG 72 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R+G+ + + AR+E + ++ + +R R +N IR + L W+ Sbjct: 73 RMGATN-WGVSARIETEDEFLELGTGTQGGQERPRRVFLLNGRQIRGQEAWEDTLATVWI 131 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P MDR+FS + RRRFLDR+V A+ P H R + ++R M RNRLL + + SW S Sbjct: 132 TPQMDRLFSEGASGRRRFLDRLVMAVTPHHARELAAYDRAMTQRNRLLQTRFSEHSWLSG 191 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-ALK 244 +EA MA V + AR E + + + FP +L + K + S A++ Sbjct: 192 LEASMARHAVAVAAARQETVRQICHYAQNGL--GAFPAAIATLECAVAQKLETSPALAVE 249 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + +KL D R+ D+ R G HRSD +++ A STG+QK +L+G+ LAHA Sbjct: 250 DWLREKLADLREDDAARGRATFGTHRSDFLLEDLTSRQPAALASTGQQKSLLIGVVLAHA 309 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 RL+++ G PILLLDE HLD +R +L IV D + + +TGTD++ F L +TA+F Sbjct: 310 RLVTDYRGQPPILLLDEPLVHLDAARRASLLEIVQDFRTTVLLTGTDQAPFAPLKQTAQF 369 Query: 365 MRISNH 370 + N Sbjct: 370 ETLKNG 375 >gi|21240777|ref|NP_640359.1| recombination protein F [Xanthomonas axonopodis pv. citri str. 306] gi|25453249|sp|Q8PRG0|RECF_XANAC RecName: Full=DNA replication and repair protein recF gi|21106041|gb|AAM34895.1| DNA replication and repair RecF protein [Xanthomonas axonopodis pv. citri str. 306] Length = 368 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 149/371 (40%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MHVVRLSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ EG + + + R +++ + + L L + Sbjct: 61 IQQGANDLEVFVEWKEGGGAAVERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQG-AQPRMLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R+ + L ++ P + LS F G Sbjct: 180 AWDNELAESGETLTSRRMRYLERLQDRLVPVADAI-APALGLSALTFAPGWKRHEVS--- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T GPHR+D + + A S G+ K+ + LA A Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWMPSFHALPGKDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA-- 362 + G P++ LD++ + LD + + + + +Q+ +T T+ L + A Sbjct: 293 EDFAFERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATET--PPGLADAAAL 350 Query: 363 -KFMRISNHQA 372 + + + Q Sbjct: 351 LQQFHVEHGQI 361 >gi|312193900|ref|YP_004013961.1| DNA replication and repair protein RecF [Frankia sp. EuI1c] gi|311225236|gb|ADP78091.1| DNA replication and repair protein RecF [Frankia sp. EuI1c] Length = 374 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 88/379 (23%), Positives = 154/379 (40%), Gaps = 17/379 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FR+Y +L L A FVG NG GKTN+LEA+ +++ R + A + Sbjct: 1 MHVTHLQLVDFRSYPALELTLPAGVVTFVGANGQGKTNLLEAVGYVATLGSHRVSGDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V G ++E R+ + +++N + EL L + Sbjct: 61 IREGAERAVIRSRIVNGDRAALA---EIEIVTGRANK-VRLNRRPLSRPRELLGLLSVVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G ERRRFLD ++ A PR + D+ER++R R LL + D Sbjct: 117 FAPEDLAMVKGDPGERRRFLDELLVARTPRLAAVIADYERVLRQRTTLLR-AHGDLRTLE 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--------IKLSLTGFLDGKF 236 S + +A G ++ AR+ +++ L + + + ++ Sbjct: 176 SWDEALARHGAELLAARLALVDDLRPRVQAAYAAVAGTADEDATEKGVGVDYRCGVELPE 235 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 A+ ++L R + TL+GPHR +L + + + S GE + Sbjct: 236 GADRDAIAAALIEELARVRPREIERGVTLVGPHRDELALAVGGRP-ARGYASHGESWSLA 294 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA L+ AP+LLLD++ A LD +R L +V + V Sbjct: 295 LALRLASYELL-EADDRAPVLLLDDVFAELDAHRRRRLAELVAPAEQVLITAAVGADVPA 353 Query: 357 SLNETAKFMRISNHQALCI 375 L + + L + Sbjct: 354 ELGGP--RFTVQRGEVLDV 370 >gi|154243961|ref|YP_001414919.1| recombination protein F [Xanthobacter autotrophicus Py2] gi|154158046|gb|ABS65262.1| DNA replication and repair protein RecF [Xanthobacter autotrophicus Py2] Length = 378 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 135/379 (35%), Positives = 210/379 (55%), Gaps = 11/379 (2%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M + I+ L ++ FR+Y S ++ + + G NG GKTNILEA+SFLSPGRG RRA Sbjct: 1 MPHA-AIRKLTLTAFRSYPSAQVSVEDGPVVLTGPNGAGKTNILEALSFLSPGRGLRRAQ 59 Query: 61 YADVTRI-----GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 ++ G P ++ A VEG G + + + VR +I+ + Sbjct: 60 LGEIGHRAPGAAGEP-PWAVSALVEGALGEVRLGTGYDPVQEGGVRRCRIDGEPAPSANA 118 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 HL++ WL P MD +F G +RRR+LDR+V A+D H R+ ER +R RNRLL E Sbjct: 119 FLDHLKVLWLTPEMDGLFLGPPGDRRRYLDRLVLAVDGAHGTRVNGLERALRSRNRLLEE 178 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDG 234 + + ++E ++AEL V + AR+E + L + I + + FP +L+L G ++ Sbjct: 179 -NGSARFLDAVEHEVAELAVAVAAARLETVARLGAEIAAHRDDASLFPFAELALDGAVER 237 Query: 235 KFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 +++ Y L D R D + RTL GPH +DL V + +K + A STGEQK Sbjct: 238 LIAVHPALEVEDRYRALLRDNRPRDRAAGRTLEGPHLTDLSVSHGEKQLPAARCSTGEQK 297 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 +L+G+ L+HARL+++ GF+PILLLD++ A+LD +R LF + +G+Q +MTG D + Sbjct: 298 SLLIGLTLSHARLVASMQGFSPILLLDDVVAYLDAARRTGLFEALARLGAQAWMTGADPT 357 Query: 354 VFDSLNETAKFMRISNHQA 372 F +L+ A+ ++ Sbjct: 358 AFSALDG-AERFEVAPGTI 375 >gi|120401032|ref|YP_950861.1| recombination protein F [Mycobacterium vanbaalenii PYR-1] gi|166220720|sp|A1T105|RECF_MYCVP RecName: Full=DNA replication and repair protein recF gi|119953850|gb|ABM10855.1| DNA replication and repair protein RecF [Mycobacterium vanbaalenii PYR-1] Length = 386 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 159/374 (42%), Gaps = 24/374 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR++A + L + T+FVG NG GKTN++EA+ + + R AS A + Sbjct: 1 MYVRHLALTDFRSWARVELELEPGRTVFVGSNGFGKTNLIEALWYSATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V ++++ L+ R+ + ++N +R E+ LR Sbjct: 61 IRAGAERAVVSTIVVNDG---RELAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G ERRR+LD + PR D+++++R R LL Sbjct: 117 FAPEDLALVRGDPGERRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASGARYRGD 176 Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234 +A G ++ ARV+++N L+ + + Q + +D Sbjct: 177 RGALETLDVWNGHLASHGAQLISARVQLVNELAPEVEKAYQLLAPGSRPAAIRYRSGVDV 236 Query: 235 KFDQSFCALKEE------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 ++ +E L R + L+GPHR DL + D+ + S Sbjct: 237 VEAEAAAGNSDEEMFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQ-VAKGFAS 295 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + + + LA L+ G P+LLLD++ A LD +R AL + V Q+ +T Sbjct: 296 HGESWSMALALRLAAYELL-RVEGSDPVLLLDDVFAELDSARRQALAQ-VAATAEQVLVT 353 Query: 349 -GTDKSVFDSLNET 361 ++ + + Sbjct: 354 AAVEEDIPAEWDAR 367 >gi|284052471|ref|ZP_06382681.1| recombination protein F [Arthrospira platensis str. Paraca] Length = 379 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 177/381 (46%), Gaps = 19/381 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ +FRNY + + FDA TI VG+N GK+N+LEA+ LS + R D+ Sbjct: 1 MYLKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + A +E D+++ L ++ R + IN ++ + L + Sbjct: 61 V-LDNHAIAQITATLERDSSTLDLALTLRSQGR---RTVAINGQSVKRHLDFLSILNVVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSS 181 + G ERR +LDR++ ++P + + + +++R RN LL G Sbjct: 117 FSSLDLDLVRGSPAERRHWLDRLLIQLEPVYAYMLDQYNQVLRQRNALLKRGPMGGTTPE 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238 + +AQ+A G ++ R +I L L + Q + L++T + + Sbjct: 177 ELAVWDAQLAVTGARVLRRRDRVIERLEPLARMWHQSISGSSETLNITYQPNIEPPCKPQ 236 Query: 239 ------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +++ + K+ + TL+GPHR D+I ++ +GS+G+Q Sbjct: 237 QRWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFTI-NQTPARQYGSSGQQ 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + +++ + LA +LI + G P+LLLD++ A LD ++N L + +++ Q +T T Sbjct: 296 RTLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLITTTHL 354 Query: 353 SVFDS-LNETAKFMRISNHQA 372 FD + ++ + + + Sbjct: 355 GAFDHQWLQQSQILMVQQGKI 375 >gi|78484349|ref|YP_390274.1| DNA replication and repair protein RecF [Thiomicrospira crunogena XCL-2] gi|123556168|sp|Q31JS3|RECF_THICR RecName: Full=DNA replication and repair protein recF gi|78362635|gb|ABB40600.1| DNA replication and repair protein RecF [Thiomicrospira crunogena XCL-2] Length = 362 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 158/369 (42%), Gaps = 13/369 (3%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI + FRN L F + VGDN GKT ++EAI L+ GR FR A + Sbjct: 3 KILQFQLQHFRNIEQASLTFGEGLNLIVGDNAAGKTALIEAIWTLASGRSFRTAKPHQLI 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + + G AD K+ L+I+ + + +++ L + L Sbjct: 63 QQNQSELV-----LFGTLTEADRIHKIGLARTSDKVTLKIDGELAKTQADMSAKLPVQLL 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P R+ RR+F+D F + ++R ++ RN L + +S Sbjct: 118 TPESHRLLEEGPKARRQFMDWGCFHHNADFIHLWRHYQRALKQRNHALKK-RLPASQIQL 176 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +AQ+ + KI++ R + I L+ ++E+ Q P I +S + + + E Sbjct: 177 WDAQLVDAAEKIDVIRADYITRLTPYLVEFCQAL-MPEITVS----PECHYRPGWPKTAE 231 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 Y + L D D++ T G HR+D+ + + + S G+QK+ + + LA A Sbjct: 232 SYRQLLADNFAKDTLQGHTQYGSHRADIKFRFNGQE-ALMILSRGQQKLFVCALLLAQAT 290 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAKF 364 L + I+L+D++ A LD R L +++ + Q +T T + + L E AK Sbjct: 291 LYQQHSQNPVIMLIDDLPAELDAKHRETLLKLLNLLDIQHILTSTAQDLIPVLEPEKAKI 350 Query: 365 MRISNHQAL 373 RI + + + Sbjct: 351 WRIQHGELI 359 >gi|153002882|ref|YP_001377207.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. Fw109-5] gi|166220696|sp|A7H677|RECF_ANADF RecName: Full=DNA replication and repair protein recF gi|152026455|gb|ABS24223.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. Fw109-5] Length = 369 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 84/370 (22%), Positives = 159/370 (42%), Gaps = 12/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L + +FRN A + L+ + T+ +G+NG GKTN+LEAI FL+ + R A A++ Sbjct: 1 MKLLSLAVQDFRNLAQVELLPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRTARLAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + +G G +++++ R ++ +D L Sbjct: 61 VRHGAQTGL-VAGDFDGPGGTRRVAVQV----APGGRVALLDGKPQERLDAYFDGLAAVC 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRRFLDR F P ++ R +R RN L G + + Sbjct: 116 FAPDDLLLVKGGPEGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRGGSPEVE--A 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFC 241 S + G +I R +++ L+ + ++ + P + + + + Sbjct: 174 SFRGPLVRAGARIVRRRRDLVEELAPRVSTAFREISGPAAPEARFAYRPAAGVQAEVGEA 233 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L E L + D T +GPH +L++ + + S G+Q+ +++ + + Sbjct: 234 ELAERLEHALAQRLERDRDRGFTSVGPHMDELVLALDGRGARA-YASQGQQRALVLALKI 292 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360 A + G P+LLLD++S+ LD K L + + +Q F+T TD+ + + + Sbjct: 293 AEIENLRAALGRPPLLLLDDVSSELDPTKNRYLLAYLAALPAQAFLTTTDRRLIEPAAGP 352 Query: 361 TAKFMRISNH 370 F ++ Sbjct: 353 DTAFYKVEGG 362 >gi|110640083|ref|YP_680293.1| DNA replication and repair protein [Cytophaga hutchinsonii ATCC 33406] gi|123354188|sp|Q11NR3|RECF_CYTH3 RecName: Full=DNA replication and repair protein recF gi|110282764|gb|ABG60950.1| DNA replication and repair protein [Cytophaga hutchinsonii ATCC 33406] Length = 377 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 145/377 (38%), Gaps = 23/377 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ +++ F+NY L L F A +F G NG GKTN+L++I L + F + Sbjct: 1 MYIEKISLLNFKNYPELELSFSAGINLFAGLNGSGKTNLLDSIYCLCLTKSFLSTTDQQT 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F + G K++ D + ++ + E Sbjct: 61 ITTGQGYFSAL-----GWFQENAKEFKIQYDFDGKKKSFTVDKKPYAKISEHIGRFPAIV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180 L P + S +RRRF D + D + +I + ++ RN LL + D Sbjct: 116 LTPHDTDLIRNSSEDRRRFFDTLFSQADHVYLDALIRYNHFIKQRNALLKQAADGMLVDR 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + + + G I R E + L + EY + H + Sbjct: 176 ILMDAYDHNLLQSGKIIAQKRDEYLKRLLPIFQEYYSLLSPDHEATDIEY--------ET 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L ++ + D D + +RT G H+ D ++ I +GS G+QK ++ + Sbjct: 228 NVLSADFEQVFKDSYSKDLILQRTNKGVHKDDFKFLINNEPIK-HYGSQGQQKTFVIALK 286 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKS----VF 355 LA L+ TG PILL+D+I LD+ + L +V I Q+F++ F Sbjct: 287 LAQYELLKACTGHNPILLMDDIFDKLDDLRIEKLIHLVQKYITGQLFISDARPDRSSIFF 346 Query: 356 DSLNETAKFMRISNHQA 372 S + + I + Sbjct: 347 QSNTKDFRMFIIDRGKV 363 >gi|77358985|ref|YP_338560.1| gap repair protein [Pseudoalteromonas haloplanktis TAC125] gi|97180877|sp|Q3IDE8|RECF_PSEHT RecName: Full=DNA replication and repair protein recF gi|76873896|emb|CAI85117.1| gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction [Pseudoalteromonas haloplanktis TAC125] Length = 364 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 161/375 (42%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRN +L L I G+NG GKT++LEAI +LS G+ FR + + + Sbjct: 1 MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTSKHKSI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123 F + G + + D+SI + ++ L+I R + EL + + + Sbjct: 61 IAHQQEQFV-----IHGRKAIHDLSIPIGISKTQAGETNLKIQGKASRKISELAQLMPVQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SW 182 + P +F G ERR+FLD +F ++ F ++++ RN LL + Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKSKPKNYFDQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + L +IN R+ I+ + + E L+L L+ F+ + Sbjct: 176 IKFWDKEFVRLAEQINKLRMAYISRFKQQFFDKMCAE------LTLIRDLEISFNAGWKE 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E + L + D+ T GPH++D ++ S G+ K++L + + Sbjct: 230 -SESLSDALELNFERDARQGFTSKGPHKADFSFSVAGSSVENIF-SRGQLKLLLYALKVT 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ----IFMTGTDKSVFDSL 358 LI + T ILL+D++ + L ED + + +++ SQ ++ + +V + + Sbjct: 288 QNSLIESETDKQSILLIDDLPSELSEDTKEKVGQLLAHCSSQIFISSILSESISAVVEPM 347 Query: 359 NETAKFMRISNHQAL 373 + + + + Sbjct: 348 QRELQMFHVKHGNLI 362 >gi|126663370|ref|ZP_01734368.1| putative DNA replication and repair protein [Flavobacteria bacterium BAL38] gi|126625028|gb|EAZ95718.1| putative DNA replication and repair protein [Flavobacteria bacterium BAL38] Length = 359 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 164/372 (44%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N A + FDA+ FVG NGVGKTNIL+AI L+ G+ + Sbjct: 1 MFLKQLSLLNYKNLAQIEFEFDAKINCFVGKNGVGKTNILDAIYHLAYGKSYFNPLAIQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G FF A +E I L+ ++++ N + + E + + Sbjct: 61 IRHGEE-FFVIDALLEKNNKEEKIVCSLKKGQKKTIKR---NGKIYDKLSEHLGLIPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + PS + S RR+F+D ++ +D + + +I +++++ RN LL FD+ Sbjct: 117 ISPSDSDLIVEGSETRRKFIDSVIATLDNSYLQLLIQYQKIVAQRNALLKYFALNQTFDA 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S Q++ G I R + ++ + ++ + + K++L Sbjct: 177 DNLSIYNEQLSHSGQLIFEKRKQFLSDFIPIFEKHHTNISGGNEKVALKY--------ES 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K+ L + + D + + T G H+ DLI + I GS G+QK L+ + Sbjct: 229 QLFKKNLLLLLEESLQKDRIIQYTSAGIHKDDLIFEIEGYPIK-KFGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKS----VF 355 LA + +G PILL D+I LDE + + +V D + QIF++ T + Sbjct: 288 LAQFEFMKKQSGELPILLFDDIFDKLDETRVQKIVTMVNDAVFGQIFISDTHAKRTELII 347 Query: 356 DSLNETAKFMRI 367 +++ K I Sbjct: 348 KETHQSYKIFSI 359 >gi|238765486|ref|ZP_04626405.1| DNA replication and repair protein recF [Yersinia kristensenii ATCC 33638] gi|238696310|gb|EEP89108.1| DNA replication and repair protein recF [Yersinia kristensenii ATCC 33638] Length = 323 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 138/337 (40%), Gaps = 14/337 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L + VG NG GKT++LEAI L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E + + + + D VR I+ V EL + L + Sbjct: 61 IRHECAGFI-LHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYAQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ L +I+ R +A+++ I P LS + + Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T +GPH++D + D S G+ K+++ + LA Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 ++ +G + LLD+ ++ LD +R L + Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKAT 323 >gi|91214642|ref|ZP_01251615.1| DNA replication and repair protein RecF [Psychroflexus torquis ATCC 700755] gi|91187069|gb|EAS73439.1| DNA replication and repair protein RecF [Psychroflexus torquis ATCC 700755] Length = 364 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 163/373 (43%), Gaps = 21/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L++ ++N+ L L FD++ FVG NG+GKTN+L+AI L+ G+ + + Sbjct: 1 MIIKKLSLINYKNFEQLTLEFDSKINCFVGKNGIGKTNVLDAIYHLAFGKSYFNPVTSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FF E I + + + ++ N + + + + Sbjct: 61 IKH-EEEFFMLEGEFLNGEKEERI---ITSFKRGQGKLIKRNGKEYEKISDHIGTIPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S RR+F+D ++ D + ++ + +++ RN LL FD Sbjct: 117 ISPTDRDLILEGSETRRKFMDGVIAQGDKLYLNTLLKYNKIVSQRNALLKYFAVNRTFDE 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+ E G I R + I ++ + Q+ + +SLT +S Sbjct: 177 TSLEVYDDQIIEFGEIIFEKRQQFIKEFKPILKKRYQEISNSREDISLTY-------KSQ 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E + + L G K D + + G H+ DLI ++ GS G+QK L+ + Sbjct: 230 FNNGESFKEVLKFGLKTDLQRQFSNFGTHKDDLIFKIKSHSVK-KFGSQGQQKSYLIALK 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL- 358 A + + G PILLLD+I LDED+ + + ++VTD Q+ ++ T +++ Sbjct: 289 FAQYDFLKSHYGVKPILLLDDIFDKLDEDRVSKIVKMVTDTELGQMCISDTHPERTENVV 348 Query: 359 ---NETAKFMRIS 368 + K + + Sbjct: 349 KKNTDHYKMINLE 361 >gi|15834965|ref|NP_296724.1| recombination protein F [Chlamydia muridarum Nigg] gi|270285139|ref|ZP_06194533.1| recombination protein F [Chlamydia muridarum Nigg] gi|270289161|ref|ZP_06195463.1| recombination protein F [Chlamydia muridarum Weiss] gi|301336534|ref|ZP_07224736.1| recombination protein F [Chlamydia muridarum MopnTet14] gi|13959495|sp|Q9PKW5|RECF_CHLMU RecName: Full=DNA replication and repair protein recF gi|7190387|gb|AAF39207.1| recF protein, putative [Chlamydia muridarum Nigg] Length = 365 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY+ LRL + G N GKTNILEA+ LS GR FR + + Sbjct: 1 MRVHSLFLKDFRNYSELRLELGPEMNSIFGLNAQGKTNILEALYILSLGRSFRTSRLTEA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FF +E + + L + D+ + + + I + L + Sbjct: 61 IRFGSSHFF-----IEAVFSQNQVFHTLSIQVDKRGKKILFDGAPITKLSALVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 I G ERRRFLD ++ ++ ++ + + + RN + D + Sbjct: 116 FSVKDTTIIEGSPAERRRFLDLLLAQASEKYTGQIALYHKALDQRNAAIK--TQDYKTIA 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + G + + R E L + + L L + + Sbjct: 174 AWNSPLIAYGSLVALLRYECAKKLHKIFQNLWDNTLKETLSLRYESSLITTESPTLNDIA 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y ++L D T +GPHR +LI+ D ++ S G++ +L + A Sbjct: 234 SNYYEQLRLANTKDFELGYTTVGPHRDELIITLNDLPVS-KFSSEGQKHSLLAVLRFAEC 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + P+L +D+I A LD+++ + LF++ T +G + + + DS + Sbjct: 293 VYLQEEFLIHPLLCMDDIHACLDQNRLDQLFQLSTSLGQTVTTSTICPNHLDS---NSSI 349 Query: 365 MRISNHQALCI 375 ++ Q + Sbjct: 350 FHVTQAQVSLV 360 >gi|332304389|ref|YP_004432240.1| DNA replication and repair protein RecF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171718|gb|AEE20972.1| DNA replication and repair protein RecF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 363 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 150/373 (40%), Gaps = 19/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + I RN + L +G NG GK++ILEAI +L GR FR + V Sbjct: 1 MKLDSVQIRNLRNLQQVSLNPSHGVNFILGINGSGKSSILEAIHYLGFGRSFRTTKHKHV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + SF + F + E + + I D V + IN V + EL L + Sbjct: 61 IQSDQESF-TVFCQCTDQESVKRLGISRNIND---VVSVSINGVRGNKISELVSQLPVQI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P I G RR+++D +F ++ + +L++ N L + GY D Sbjct: 117 FTPQSSDILLGSPKLRRKYIDWCLFHVEHPFLICSNSYTKLLKHNNALCRKHQVGYADPQ 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 +A+ G + R M+ L LI ++ P + ++ + + Sbjct: 177 RI-YWTEHLAKYGETLTQFRNTMMERLIPLITSNLEH-FLPEFCVEISYYRGWEKGL--- 231 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + + L D + +GPH++D+ K S G+ ++++ + L Sbjct: 232 ----DLIEALAKASDRDYRNGYISVGPHKADVRFKIDGKPAHEVL-SRGQLRMLVAALQL 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-- 359 A + + + T I LLD++ A LD KR + + +Q+F+T + + ++ Sbjct: 287 ATTQCLMSYTQKTCIFLLDDVGAELDAAKREVFIDKLLESNTQLFVTAIEAHQLEFIDKY 346 Query: 360 ETAKFMRISNHQA 372 + K + + Q Sbjct: 347 QNKKMFHVEHGQV 359 >gi|111020658|ref|YP_703630.1| recombination protein F [Rhodococcus jostii RHA1] gi|123340329|sp|Q0SAG4|RECF_RHOSR RecName: Full=DNA replication and repair protein recF gi|110820188|gb|ABG95472.1| DNA replication and repair protein [Rhodococcus jostii RHA1] Length = 410 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 165/392 (42%), Gaps = 39/392 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FR++ +L L T+FVG NG GKTN+LEA+ +LS R +S A + Sbjct: 1 MFVRALSLRDFRSWDALGLTLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F+ V ++++ LE + +S R +IN R E+ L+ Sbjct: 61 IRTGTGQAFAGATVVNAG---RELTVDLELNEGKSNRA-RINQSPTRRPREILGILQTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 P + G +RRR+LD ++ + PR D++R++R R+ LL Sbjct: 117 FAPEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDRVLRQRSALLKTAGGALRRVS 176 Query: 175 --------EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--I 224 +G + + +A G ++ R+ +++ L+ + E Q Sbjct: 177 RGSGRPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPA 236 Query: 225 KLSLTGFLDGKFDQSFCA------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 + L F L+E + ++L R + L+GPHR D Sbjct: 237 SIRYRSSLGSSLPPEFTEPARVPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDD 296 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 L + D S GE + + LA L+ + G P+L+LD++ A LD +R Sbjct: 297 LELHLGDTPAK-GFASHGESWSFALSLRLAGFALL-RSDGSDPVLMLDDVFAELDRRRRR 354 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 AL ++ D Q+ +T + +F Sbjct: 355 ALAKVALDAE-QVLITAAVPEDVPEELDAVRF 385 >gi|326335178|ref|ZP_08201375.1| recombination protein F [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692708|gb|EGD34650.1| recombination protein F [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 378 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 91/360 (25%), Positives = 153/360 (42%), Gaps = 18/360 (5%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++ +K L I F+N + F + VG+NGVGKTN L+AI LS + + + Sbjct: 19 QMFLKQLYILNFKNIENKEFSFSPKLNCLVGNNGVGKTNSLDAIYHLSMTKSYFNTTTLY 78 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R+G F+ + + I ++ + L+ N V + E I Sbjct: 79 NIRLGED-FYLIEGNFQKEDRQEHIVCSVKRG---QKKILKRNGKVYEKLSEHIGAFPIV 134 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 + PS + S RRRFLD M+ I P + ++ + +++ RN LL + YFD Sbjct: 135 IVSPSDRDLIHEGSETRRRFLDSMLSQIQPHYLEDLLHYNKILSQRNSLLKIMAEKQYFD 194 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + Q++ G KI R + + E ++ + + + Sbjct: 195 DITLDIYDEQLSLYGEKIFQERSAFLTSFLPYFQEQYKRLSQGRETVDIHY--------E 246 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 KE+ L + D + + T +G H+ DLI ++ + GS G+QK L+ + Sbjct: 247 SSLKKEKLKTLLKRSIEQDRIVQYTTVGIHKDDLIFSINNQPVK-KFGSQGQQKSFLIAL 305 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358 LA I T PILLLD+I LD + L +VT+ Q+F++ TDK + + Sbjct: 306 KLAQFHSIYKQTSVTPILLLDDIFDKLDAQRVTQLIHLVTEAPFGQVFISDTDKDRTERI 365 >gi|237806779|ref|YP_002891219.1| DNA replication and repair protein RecF [Tolumonas auensis DSM 9187] gi|237499040|gb|ACQ91633.1| DNA replication and repair protein RecF [Tolumonas auensis DSM 9187] Length = 357 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 88/368 (23%), Positives = 158/368 (42%), Gaps = 16/368 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L I FRN + + +G NG GK+++LEAI +LS GR FR V Sbjct: 2 LHKLQIQHFRNLGQTEIYPSGGMNLLLGLNGSGKSSVLEAIHYLSLGRSFRTHLTNRVIM 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G +F + FA++E E I ++ + + D L+I + +L L + + Sbjct: 62 QGEKAF-TLFAQLELDEQSISIGLQKDRQGDTQ---LKIGGKSADKLAQLASLLPLQLIH 117 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + +G +RR F+D VF ++ RL++ RN LL + + + Sbjct: 118 PEGYNLLTGGPQQRRAFIDWGVFHVEQAFFPLWGKVRRLLKQRNALLRQSSHYAP-LAYW 176 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + Q+AE +++ R + AL L+ + Q E P T + + +Q L Sbjct: 177 DQQLAEFSEALSVFRQQYCQALLPLVQQICQ-ELLPEYTFQATFYAGWQQEQGLHLL--- 232 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 L +G + D T IGPHR+DL + + S G+ K+++ + LA Sbjct: 233 ----LQEGFERDRQLGHTAIGPHRADLRLR-AEGVPVQDLLSRGQLKLLVCALRLAQGLY 287 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--TAKF 364 + + + L+D+ ++ LD +KR L + + SQ+F+T D+ + + + Sbjct: 288 LRQNSEKTCLFLIDDFASELDAEKRYVLAKRLQQCESQVFITAIDQQPLQEMMQEFDCRL 347 Query: 365 MRISNHQA 372 + Sbjct: 348 FHVKQGNI 355 >gi|300814773|ref|ZP_07095021.1| putative DNA replication and repair protein RecF [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511160|gb|EFK38412.1| putative DNA replication and repair protein RecF [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 358 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 93/356 (26%), Positives = 155/356 (43%), Gaps = 11/356 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + F+ + FRNY SL+L + I G N GKTN+LEAI F+ D+ Sbjct: 1 MNLSFIGLYNFRNYKSLKLNTGPKINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 E + I++ + V+ IN+ D + I Sbjct: 61 INFSKNEAC-ILGTYENNCYKDNYRIEITRNN---VKKYFINEQKTNSKD-FRQARHIIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I +RRRF+D + ID + + + +++ RN+LL + S Sbjct: 116 FSPVDLNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLK-ISKNMSLLE 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +++++G KI I R+ I L+ ++ Q + + +L T + ++ Sbjct: 175 IYDRELSKIGSKIIIMRLIAIKELNKYANKHYQNLSK-NDRLKTTYLSTIPLSSNEEEIR 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L + D + T IGPHR D+ DK+ T A GS GEQ+ V++ + L+ Sbjct: 234 ENFYNFLKLNQYKDFQRKNTSIGPHRDDIDFKINDKS-TKAFGSQGEQRSVVLSLKLSEF 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359 LI ILLLD++ + LDE + L + D +Q F+T T+ K F +LN Sbjct: 293 DLIYKKFNDKSILLLDDVFSELDEKRTMYLLDSIKD--TQTFITTTEFKDYFKNLN 346 >gi|325922761|ref|ZP_08184495.1| DNA replication and repair protein RecF [Xanthomonas gardneri ATCC 19865] gi|325546757|gb|EGD17877.1| DNA replication and repair protein RecF [Xanthomonas gardneri ATCC 19865] Length = 368 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 79/369 (21%), Positives = 147/369 (39%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MHVVRLSIHRLRRFQTVELYPASSLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ E ++ S + R +++ + + L L + Sbjct: 61 IQQGADDLEVFVEWRERSGETSERSRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPRMLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R+ ++ L ++ P + LS F G Sbjct: 180 AWDHELAESGESLTSRRLRYLDRLQERLIPVATAI-APSLGLSALTFAPGWKRHEVS--- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T GPHR+D + D S G+ K+ + LA A Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWTPAF-DALPGKDTLSRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ G P++ LD++ + LD + + + + +Q+ +T T+ E Sbjct: 293 EDFAHERGEWPVIALDDLGSELDRHHQARVLQRLASAPAQVLITATEIPPGLADAGELLH 352 Query: 364 FMRISNHQA 372 + + Q Sbjct: 353 LFHVEHGQI 361 >gi|291571835|dbj|BAI94107.1| DNA replication and repair protein RecF [Arthrospira platensis NIES-39] Length = 379 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 177/381 (46%), Gaps = 19/381 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ +FRNY + + FDA TI VG+N GK+N+LEA+ LS + R D+ Sbjct: 1 MYLKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + A +E D+++ L ++ R + IN ++ + L + Sbjct: 61 V-LDNHAIAQITATLERDSSTLDLALTLRSQGR---RTVAINGQSVKRHLDFLSILNVVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSS 181 + G ERR +LDR++ ++P + + + +++R RN LL G Sbjct: 117 FSSLDLELVRGGPAERRHWLDRLLIQLEPVYAYMLDQYNQVLRQRNALLRRGPMGGTTPE 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238 + +AQ+A G ++ R +I L L + Q + L++T + + Sbjct: 177 ELAVWDAQLAVTGARVLRRRDRVIERLEPLARMWHQSISGSRETLNITYQPNIEPPCKPQ 236 Query: 239 ------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 +++ + K+ + TL+GPHR D+I ++ +GS+G+Q Sbjct: 237 QRWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFTI-NQTPARQYGSSGQQ 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + +++ + LA +LI + G P+LLLD++ A LD ++N L + +++ Q +T T Sbjct: 296 RTLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLITTTHL 354 Query: 353 SVFDS-LNETAKFMRISNHQA 372 FD + ++ + + + Sbjct: 355 GAFDHQWLQQSQILMVQQGKI 375 >gi|218442160|ref|YP_002380489.1| recombination protein F [Cyanothece sp. PCC 7424] gi|226737786|sp|B7KID4|RECF_CYAP7 RecName: Full=DNA replication and repair protein recF gi|218174888|gb|ACK73621.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7424] Length = 384 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 176/387 (45%), Gaps = 25/387 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + FRNY ++ F++Q TI VG+N GK+N+LEA+ L+ + R + D+ Sbjct: 1 MYLKTVQLRSFRNYREQQVNFESQKTIIVGNNAQGKSNLLEAVELLATLKSHRVSRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ + A +E GLA++ + L R + +N +R + L Sbjct: 61 VLEGATTG-QILATLERAYGLAELGLILRVSGR---RTVILNQEPLRRQLDFLGVLNAVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 + G RR ++D ++ ++P + + + ++++ RN LL + Sbjct: 117 FSSLDLDLVRGSPESRRSWIDTLLVQLEPIYAHILSQYYQVLKQRNALLKKIRQQEEDSQ 176 Query: 179 -----------DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 D S ++Q+AE G ++ R ++ L+ L ++ + +L Sbjct: 177 NPSLSSEQLSNDISQLKLWDSQLAETGSRVTRRRARVLERLTPLAQKWHANISGKTEQLE 236 Query: 228 LTGFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 + + + + +++ + +K+ R + T++GPHR ++ ++ + Sbjct: 237 IQYMPNVNWTEDEPMQVQQAFLEKIEKRRIAEQQLGTTVVGPHRDEIEF-IINQTPAKYY 295 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 GS G+Q+ +++ + LA LI G P+LLLD++ A LD ++N L + D Q Sbjct: 296 GSQGQQRTLVLALKLAELHLIEEVVGEPPLLLLDDVLAELDPHRQNQLLDAIED-RFQTL 354 Query: 347 MTGTDKSVFDS-LNETAKFMRISNHQA 372 +T T + F++ ++++ + I Q Sbjct: 355 ITTTHLNSFETKWLKSSQILSIDGGQI 381 >gi|315441700|ref|YP_004074579.1| DNA replication and repair protein RecF [Mycobacterium sp. Spyr1] gi|315260003|gb|ADT96744.1| DNA replication and repair protein RecF [Mycobacterium sp. Spyr1] Length = 389 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 84/363 (23%), Positives = 154/363 (42%), Gaps = 25/363 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR+++ + L T+FVG NG GKTN++EA+ + + R AS A + Sbjct: 1 MYVRHLALTDFRSWSRVELELSPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V ++++ L+ R+ + ++N +R E+ LR Sbjct: 61 IRAGAERAVVSTIIVNEG---RELAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G +RRR+LD + PR D+++++R R LL Sbjct: 117 FAPEDLALVRGDPGDRRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASSARFRGD 176 Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + +A G ++ ARV++++ L+ + + Q P + + + G Sbjct: 177 RGALETLDVWDGHLAAHGAQLIAARVDLVHELAPEVEKAYQ-LLAPASRPATVRYRSGVE 235 Query: 237 ---------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 + + L R + L+GPHR DL + D+ Sbjct: 236 VVEAEAAAGNSDPEVFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQPAK-GFA 294 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + + LA L+ G P+LLLD++ A LD +R AL + V Q+ + Sbjct: 295 SHGESWSMALSLRLAAYELL-RADGSDPVLLLDDVFAELDSARRQALAQ-VAASAEQVLV 352 Query: 348 TGT 350 T Sbjct: 353 TAA 355 >gi|114561191|ref|YP_748704.1| DNA replication and repair protein RecF [Shewanella frigidimarina NCIMB 400] gi|122301223|sp|Q08A49|RECF_SHEFN RecName: Full=DNA replication and repair protein recF gi|114332484|gb|ABI69866.1| DNA replication and repair protein RecF [Shewanella frigidimarina NCIMB 400] Length = 360 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 83/373 (22%), Positives = 161/373 (43%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + +NI FRN S L + G NG GKT+ILEAI FL GR FR V Sbjct: 1 MSLSRINIGSFRNITSASLQPCDGLNLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FA + + I ++ + V+ I+ ++ + L + L I Sbjct: 61 INND-DDKLTLFAHLIDADRDCKIGLRRHRSGEIEVK---IDGEKVKRLSTLAETLPIQV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + RR+F+D F DP + ++ ++++ RN+LL + Sbjct: 117 ITPESFSLLFEGPKARRQFIDWGAFHSDPHFYQAWVNTRKVLKQRNQLLRN-QSSYNQIQ 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ ++ R + +++L+ ++++ + P I + ++ K Sbjct: 176 FWDKELVRYAEQVTDIRNQYVDSLN-VLLKGIIGVFLPRIDIKVSFTRGWDS-------K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++A+ L + D + T GPH++DL + + A S G+ K+++ + +A Sbjct: 228 TDFAQLLENQYSRDLAAGNTGSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362 +L+ I L+D++ + LD R L +++T+ G+QIF+T D DSL+ Sbjct: 287 KLLKQQLDKNSIYLVDDLPSELDAQHRQLLLQLLTETGAQIFVTAIDPQAIVDSLSSPPN 346 Query: 363 KFMRISNHQALCI 375 + + I Sbjct: 347 RMFHVEQGLVTVI 359 >gi|149370654|ref|ZP_01890343.1| DNA replication and repair protein RecF, ABC family ATPase [unidentified eubacterium SCB49] gi|149356205|gb|EDM44762.1| DNA replication and repair protein RecF, ABC family ATPase [unidentified eubacterium SCB49] Length = 359 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 164/373 (43%), Gaps = 24/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ ++N+ FD F G NGVGKTN L+AI LS G+ + + Sbjct: 1 MILNSLSLLNYKNFEVQTFEFDPNINCFTGHNGVGKTNALDAIYHLSFGKSYFNPITSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 R G F VEG D K+ + + ++ N + L + Sbjct: 61 IRHGEE-----FFVVEGQYIKTDRPEKIVVSAKKGQKKVIKRNGKAYDRFSDHIGFLPLV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 + P+ + S RR+F+D ++ D + + ++ + +++ RN LL + +W Sbjct: 116 IISPADRDLIIEGSDTRRKFIDGVISQGDSLYLKDILSYGKILVQRNSLLKYFAANHTWN 175 Query: 183 ---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + Q++ELG +I+ +R E + + + +E + + + L D+ Sbjct: 176 KDNLAIYDLQLSELGERIHKSRKEFLKEFTPIFLEKYKAISSGTETVGLDYKSQLNEDR- 234 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L D MS+ T +G H+ DLI + I GS G+QK L+ + Sbjct: 235 -------MEHLLQQNVHKDKMSQYTSVGTHKDDLIFTIDEHPIK-KFGSQGQQKSFLIAL 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSV 354 LA I N PILLLD+I LDE++ + ++V D Q+F++ T ++V Sbjct: 287 KLAQFEFIKNVHKVHPILLLDDIFDKLDEERVAHIIKLVDDENFGQLFISDTHADRTEAV 346 Query: 355 FDSLNETAKFMRI 367 ++++ KF ++ Sbjct: 347 VKKVSQSYKFFKL 359 >gi|67458427|ref|YP_246051.1| recombination protein F [Rickettsia felis URRWXCal2] gi|67003960|gb|AAY60886.1| DNA replication and repair protein RecF [Rickettsia felis URRWXCal2] Length = 420 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 189/368 (51%), Gaps = 9/368 (2%) Query: 3 NRIK---IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59 +++K + L + +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A Sbjct: 55 HKMKNIFLHSLTLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSA 114 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 AD+ + A ++ GLA+ + + + +R R + N+ I +EL+K Sbjct: 115 KLADICKASEDQCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKF 170 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + WL P M+ IF+ S +RR+FLDR+V+ D +H + +E M RN++L E D Sbjct: 171 TSMVWLTPQMEGIFTSGSSDRRKFLDRIVYNFDSKHAELVSKYEYYMYERNKILAEDIRD 230 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 +W IE +MA++ I R++ + + I E + FP LS+ G ++ K Sbjct: 231 DNWLKIIEEKMADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDG 288 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + +L+ R D + RT G H+SD +V + K I STGEQK +L+ I Sbjct: 289 KENIVNFITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAI 348 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LA T APILLLDE+ HLD+ +R L T + Q+++T TD ++ Sbjct: 349 ILAEMNYAIKLTKIAPILLLDEVFVHLDDKRRGYLIEFFTGLNMQLWVTATDLEGIENFA 408 Query: 360 ETAKFMRI 367 A+ +++ Sbjct: 409 NKAQLIKL 416 >gi|190572095|ref|YP_001969940.1| recombination protein F [Stenotrophomonas maltophilia K279a] gi|226737840|sp|B2FT82|RECF_STRMK RecName: Full=DNA replication and repair protein recF gi|190010017|emb|CAQ43622.1| putative DNA replication and repair protein RecF [Stenotrophomonas maltophilia K279a] Length = 364 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 81/372 (21%), Positives = 151/372 (40%), Gaps = 10/372 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + + R ++++ L + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MLIRRLALHQLRRFSAVDLSPQPGLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + E K R +++ + + L L + Sbjct: 61 VRQGQEALEIFVEWDEQRADHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQGGPSR-MLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R + L + P + + + + + Sbjct: 180 TWDHELAEAGEPLTSRRQHYLERLQQRTVALAASL-APQLGIQ-----GLELSPGWRRHE 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T +GPHR+D VD+ A S G+ K+ + LA A Sbjct: 234 LPLADALLLARERDRQAGYTSVGPHRADWSVDFHSIPGRDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 + G P++ LD++++ LD + + + + +QIF+T T+ + L A+ Sbjct: 293 EDYAEQRGEWPVIALDDLASELDRTHQARVLERLLNGPAQIFITATETPAALLDLTHIAR 352 Query: 364 FMRISNHQALCI 375 + + Q + + Sbjct: 353 -FHVEHAQIVAV 363 >gi|183219430|ref|YP_001837426.1| DNA replication and repair protein RecF [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909576|ref|YP_001961131.1| recombinational DNA repair ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226737810|sp|B0S909|RECF_LEPBA RecName: Full=DNA replication and repair protein recF gi|226737811|sp|B0SK33|RECF_LEPBP RecName: Full=DNA replication and repair protein recF gi|167774252|gb|ABZ92553.1| Recombinational DNA repair ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777852|gb|ABZ96150.1| DNA replication and repair protein RecF [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 367 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 169/354 (47%), Gaps = 13/354 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + I FRN+ +L F ++ F+G+NG GKTN+LE+IS LS + FR + + Sbjct: 1 MFLKKIYIKNFRNHEETQLTFKSRLVFFIGNNGEGKTNLLESISLLSYLKSFRESDQNQL 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R S +F EG E L + I+ + L++N + + + + R Sbjct: 61 LRWDTSDTFIRAEFESEGNEYLFEYGIE---HSQTKRKKLKVNGEEFKKISDYVGYFRSI 117 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P I ++ERRRFLD + + + + +++I++ERL++ RN L + Sbjct: 118 VMSPPDILIIEDGNVERRRFLDAFISSTNRYYLKQLIEYERLIKQRNAALKKENASDREI 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + E +I R + I +L+ + + + + LT + Sbjct: 178 GIWDEPIIEHDSEIREIRTKTIQSLAGYFHQNLLQLSSGKDPYFLTY-------KPNITS 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 KEE+ +KL D + D T G HR L + + DK ++ GS G+++ ++ + A Sbjct: 231 KEEHKQKLIDNLRKDKAIGYTSCGNHRDTLPIGFDDKDLS-GFGSQGQKRSAVIALKTAC 289 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 ++I +TTG AP+LL+D+I LD +R ++++ G Q F T TD + Sbjct: 290 FQMIRDTTGEAPVLLIDDIIRELDVKRREYFVNLISECG-QAFFTTTDLEGINE 342 >gi|240172093|ref|ZP_04750752.1| recombination protein F [Mycobacterium kansasii ATCC 12478] Length = 388 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 160/382 (41%), Gaps = 26/382 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A L T+FVG NG GKTN++EA+ + S R + A + Sbjct: 1 MYVRHLGLRDFRSWAHADLELHPGRTVFVGPNGFGKTNLIEALWYSSTLGSHRVGTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + ++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGADRAVISTIVVSDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVVGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G +RRR+LD + P D+++++R R LL D Sbjct: 117 FAPEDLALVRGDPADRRRYLDDLATVRRPAVAAVRADYDKVLRQRTALLKSVAGARYRGD 176 Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP------HIKLSLTG 230 ++++AE G ++ AR+++++ L+ + + Q + S+T Sbjct: 177 RGVLDTLDVWDSRLAEHGAELMAARMDLVSQLAPEVAKAYQLLAPESRTASIEYRASMTS 236 Query: 231 FLDGKFDQSFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 + G + A L+ L R + L+GPHR DL + D+ Sbjct: 237 VVPGSDEPDGTADRGYLEARLLAALAARRDAEVERGVCLVGPHRDDLELRLGDQPAK-GF 295 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + V + LA L+ G P+LLLD++ A LD +R AL + + Sbjct: 296 ASHGESWSMAVALRLAAYELL-RVEGSDPVLLLDDVFAELDTRRRRALASVAESAEQVVV 354 Query: 347 MTGTDKSVFDSLNETAKFMRIS 368 + + + AK ++I Sbjct: 355 TAAVPEDIPAGWD--AKRVQID 374 >gi|21326651|gb|AAL30091.1| RecF protein [Xanthomonas campestris pv. campestris] Length = 391 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 78/370 (21%), Positives = 146/370 (39%), Gaps = 9/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ + + GDNG GKT++LEA+ ++ GR F + Sbjct: 24 MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFLGRVRDGL 83 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G E + + + R +++ + + L L + Sbjct: 84 IRQGGQDLEIFVEWRERAGDSTERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 143 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 144 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPQMLD 202 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R++ + L ++ P + LS F G Sbjct: 203 AWDHELAESGETLTSRRLQYLERLQERLVPVATAI-APSLGLSALTFAPGWRRHEVS--- 258 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T GPHR+D + A S G+ K+ + LA A Sbjct: 259 --LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDAL-SRGQAKLTALACLLAQA 315 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 ++ G PI+ LD++ + LD + + + + +Q+ +T T+ +T + Sbjct: 316 EDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATELPPGLADAGKTLR 375 Query: 364 FMRISNHQAL 373 + + Q + Sbjct: 376 RFHVEHGQLV 385 >gi|295101861|emb|CBK99406.1| recF protein [Faecalibacterium prausnitzii L2-6] Length = 373 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 158/381 (41%), Gaps = 28/381 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RN AS L + T+ G+NG GKTN+LEAI L+ G+ FR A++ Sbjct: 1 MRLLSLEVENYRNIASASLTPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETR-------DDRSVRCLQINDVVIRVVDELN 117 R G P + + + + R R R + +N ++ L Sbjct: 61 VRRGEPFAVLKASTLRAQQEEQETEEPNRIRLTVGAPDSPRPGRTVSVNGGAVKRAASLA 120 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG- 176 P + G RR+FLD + + P + + R ++ +N LL Sbjct: 121 GSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLTLYRRYVRALQQKNALLRRSS 180 Query: 177 -------YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 + + ++A+ G I R + ALS L ++ + LSL Sbjct: 181 NGIERPYAEKRALLEVLNLELAQQGEAIQQRRRAYLAALSPLACANYEELSRGAETLSLR 240 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 +F+ A+ L + + ++L GPHR DL + D + S Sbjct: 241 YA--AQFEPGG------LARLLQQKMPEELRAGQSLCGPHREDLDL-LLDGQPAKVYASQ 291 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ V++ + +A A ++ TG P++LLD++ + LD+ ++ L + + Q F+T Sbjct: 292 GQQRSVVLSLKMAEAAAAASITGEHPVMLLDDVLSELDDGRKQYLLTRMREK--QTFVTS 349 Query: 350 TDKSVFDSLNETAKFMRISNH 370 D + F L + R++ Sbjct: 350 CDDTAF--LKTDGEVYRMNGG 368 >gi|282881774|ref|ZP_06290432.1| DNA replication and repair protein RecF [Peptoniphilus lacrimalis 315-B] gi|281298384|gb|EFA90822.1| DNA replication and repair protein RecF [Peptoniphilus lacrimalis 315-B] Length = 358 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 92/356 (25%), Positives = 154/356 (43%), Gaps = 11/356 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + F+ + FRNY SL+L I G N GKTN+LEAI F+ D+ Sbjct: 1 MNLSFIGLYNFRNYKSLKLNTGPNINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 E + I++ + ++ IN+ D + I Sbjct: 61 INFSKNEAC-ILGTYENNCYKDNYRIEITRNN---IKKYFINEQKTNSKD-FRQARHIVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P I +RRRF+D + ID + + + +++ RN+LL + S Sbjct: 116 FSPVDLNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLK-ISKNMSLLE 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +++++G KI I R+ I L+ ++ Q + + +L T + ++ Sbjct: 175 IYDRELSKIGSKIIIMRLIAIKELNKYANKHYQNLSK-NDRLKTTYLSTIPLSSNEEEIR 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L + D + T IGPHR D+ DK+ T A GS GEQ+ V++ + L+ Sbjct: 234 ENFYNFLKLNQYKDFQRKNTSIGPHRDDIDFKINDKS-TKAFGSQGEQRSVVLSLKLSEF 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359 LI ILLLD++ + LDE + L + D +Q F+T T+ K F +LN Sbjct: 293 DLIYKKFNDKSILLLDDVFSELDEKRTLYLLDSIKD--TQTFITTTEFKDYFKNLN 346 >gi|89891571|ref|ZP_01203075.1| DNA replication and repair protein RecF [Flavobacteria bacterium BBFL7] gi|89516118|gb|EAS18781.1| DNA replication and repair protein RecF [Flavobacteria bacterium BBFL7] Length = 359 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 165/372 (44%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + FL++ +++++S D + FVG+NGVGKTN+L+AI L+ + + Sbjct: 1 MHLDFLSLVNYKSFSSAEFELDEKINCFVGNNGVGKTNVLDAIYHLAFAKSYFNPITVQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FF + E + + + R ++ N + E + + Sbjct: 61 IKHDQD-FFVINGNFQKKENQEKVVVSAKRGHK---RVVKRNGKAYEKLSEHIGLIPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S RRRF+D ++ + + +++ + +L++ RN LL FD Sbjct: 117 ISPADRDLIIEGSDTRRRFMDSVISLDNQDYLNQLVTYNKLIQQRNALLKYFQANRTFDR 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + Q+ L I+ RV+ + + + + +Y + +++ K D + Sbjct: 177 AGLEVYDEQLIVLATFIHKTRVQFLESFTPIFKKYYAYISQSEEDVNIYY----KSDLND 232 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A KE + L + D + + G H+ DL A+ +GS G+QK L + Sbjct: 233 TAAKEVFESAL----QKDMQLQYSSAGTHKDDLYFLLNGHAVK-KYGSQGQQKSFLTALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS----VF 355 LA I + +G PILLLD+I LDE++ + + +V D Q+F++ T V Sbjct: 288 LAQFEFIKSQSGTVPILLLDDIFDKLDENRVSQIINMVNDEQFGQLFISDTHPERTEQVV 347 Query: 356 DSLNETAKFMRI 367 ++++ K ++ Sbjct: 348 KEIHQSYKIFKL 359 >gi|186686202|ref|YP_001869398.1| recombination protein F [Nostoc punctiforme PCC 73102] gi|226737816|sp|B2IVZ4|RECF_NOSP7 RecName: Full=DNA replication and repair protein recF gi|186468654|gb|ACC84455.1| DNA replication and repair protein RecF [Nostoc punctiforme PCC 73102] Length = 374 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 168/377 (44%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K LN+ +FRNY ++ F A TI VG+N GK+N+LEA+ L+ R R D+ Sbjct: 1 MYLKTLNLRQFRNYQDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMTRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + A +E G++D+++ L RSV +N IR + L Sbjct: 61 VQEG-EAIAQINATLERQTGVSDLTLTLRRNGRRSV---ALNGESIRRQMDFLGVLNAVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GYF 178 + G RR +LD ++ ++P + + + ++R RN L Sbjct: 117 FSSLDLDLVRGGPEGRRNWLDTLLIQLEPVYAHILQQYNHVLRQRNAFLKRHVETLDATS 176 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFD 237 S + +AQ+A G ++ R I L+ + + + L + + D Sbjct: 177 LHSELAVWDAQLATTGTRVIRRRDRAIQRLAPIASAWHASISGSTEALQIKYLPNIPSED 236 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +++ + K+ + TL+GPHR ++ + ++ +GS G+Q+ +++ Sbjct: 237 NHPEEVQQAFLVKIQQRAIAELHQGTTLVGPHRDEIELTI-NQTPARQYGSQGQQRTLVL 295 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA +LI P+LLLD++ A LD ++N L + D Q +T T FDS Sbjct: 296 ALKLAELQLIEEVVKEPPLLLLDDVLAELDLSRQNQLLDAIQD-RFQTLITTTHLGSFDS 354 Query: 358 -LNETAKFMRISNHQAL 373 ++++ + + + + Sbjct: 355 QWLKSSQILFVKAGEII 371 >gi|15891955|ref|NP_359669.1| recombination protein F [Rickettsia conorii str. Malish 7] gi|20978615|sp|Q92JN5|RECF_RICCN RecName: Full=DNA replication and repair protein recF gi|15619066|gb|AAL02570.1| RecF protein [Rickettsia conorii str. Malish 7] Length = 360 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 121/361 (33%), Positives = 189/361 (52%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + LN+ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A A+V + Sbjct: 6 LHSLNLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCK 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S A ++ GLA+ + + + +R R + N+ I +EL+K + WL Sbjct: 66 T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W I Sbjct: 122 PHMEGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDRRDDNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T APILLLDE+ HLD+ +R L +T + Q+++T T+ D+ A+ ++ Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIDNFATKAQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|145221418|ref|YP_001132096.1| recombination protein F [Mycobacterium gilvum PYR-GCK] gi|189039630|sp|A4T4U1|RECF_MYCGI RecName: Full=DNA replication and repair protein recF gi|145213904|gb|ABP43308.1| DNA replication and repair protein RecF [Mycobacterium gilvum PYR-GCK] Length = 389 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 84/363 (23%), Positives = 154/363 (42%), Gaps = 25/363 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +++FR+++ + L T+FVG NG GKTN++EA+ + + R AS A + Sbjct: 1 MYVRHLALTDFRSWSRVELELSPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V ++++ L+ R+ + ++N +R E+ LR Sbjct: 61 IRAGAERAVVSTIIVNEG---RELAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G +RRR+LD + PR D+++++R R LL Sbjct: 117 FAPEDLALVRGDPGDRRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASSARFRGD 176 Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + +A G ++ ARV++++ L+ + + Q P + + + G Sbjct: 177 RGALETLDVWDGHLAAHGAQLIAARVDLVHELAPEVEKAYQ-LLAPASRPATVRYRSGVE 235 Query: 237 ---------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 + + L R + L+GPHR DL + D+ Sbjct: 236 VVEAEAAAGNSDPEVFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQPAK-GFA 294 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + + LA L+ G P+LLLD++ A LD +R AL + V Q+ + Sbjct: 295 SHGESWSMALSLRLAAYELL-RADGSDPVLLLDDVFAELDSARRQALAQ-VAASAEQVLV 352 Query: 348 TGT 350 T Sbjct: 353 TAA 355 >gi|326802597|ref|YP_004320416.1| DNA replication and repair protein recF [Sphingobacterium sp. 21] gi|326553361|gb|ADZ81746.1| DNA replication and repair protein recF [Sphingobacterium sp. 21] Length = 365 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 157/377 (41%), Gaps = 22/377 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + F+NY L F F GDNG GKTNIL+A+ +LS + + + Sbjct: 1 MWVKELTVINFKNYEEASLTFAPGVNAFTGDNGAGKTNILDALHYLSLCKSYFNPIDSQQ 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + FF E + ++ L+ + + + + + + + + Sbjct: 61 IKQQAD-FFMVQGVFEKGDQEDVLACSLKRNQKKQFKKNKKD---YQRLADHIGVYPLVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG----YFDS 180 + P+ I S S ERR+F+D ++ D R+ +I + + ++ RN LL + +D Sbjct: 117 ISPNDSFIISEGSEERRKFIDNVISQTDNRYLDDLILYNKYLQSRNSLLKQQALSKNYDD 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ +G +I R IN + ++ Q + L Sbjct: 177 DLLAVYNEQLVLVGEQIFEKRKLFINPFIEIFNKHYQHLTNDTEPVELVY--------ES 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + L + D RT G H+ DL+ + GS G+QK L+ + Sbjct: 229 QLFENRFVDLLNNTLSKDRALERTTTGIHKDDLLFTIHGMPLK-KFGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD----KSVF 355 LA + GF P+LLLD+I LD+ + L +V+ D QIF+T T ++ F Sbjct: 288 LAQYSFLRERKGFKPLLLLDDIFDKLDDKRTRKLMEMVSHDDFGQIFITDTSAERVRNTF 347 Query: 356 DSLNETAKFMRISNHQA 372 ++ + +SN + Sbjct: 348 HGIDVDVRIFEVSNGKI 364 >gi|150026041|ref|YP_001296867.1| DNA replication and repair protein RecF [Flavobacterium psychrophilum JIP02/86] gi|226737800|sp|A6H141|RECF_FLAPJ RecName: Full=DNA replication and repair protein recF gi|149772582|emb|CAL44065.1| DNA replication and repair protein RecF [Flavobacterium psychrophilum JIP02/86] Length = 359 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 81/372 (21%), Positives = 159/372 (42%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ F+N++ F+ + FVG NGVGKTN+L+AI LS G+ + Sbjct: 1 MYLKKISLFNFKNFSDTSFNFEHKINCFVGKNGVGKTNVLDAIYHLSFGKSYFNTLAVQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FF + E +I L+ + L+ N + + + + Sbjct: 61 IKHDED-FFVIDGEFDKQERSENILCSLK---KGQKKILKRNGKIYEKFSDHLGFIPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S RR+F+D ++ +D ++ + +I +++++ RN LL F++ Sbjct: 117 ISPTDADLIREGSETRRKFIDSVISQLDNQYLQGLILYQKVLSQRNALLKYFAVNRIFET 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 Q+ +LG I R + +N + + Q + + L + Sbjct: 177 GTLDIYNEQLNDLGQSIFEKRKQFLNDFIPIFNSFYQNISNSAETVQLEYESQLE----- 231 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K++ L + D + T +G H+ DL + I GS G+QK L+ + Sbjct: 232 ---KQDLLSLLQENINKDRSLQYTSVGVHKDDLSFNIAHYPIK-KFGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTD----KSVF 355 LA + +G PILL D+I LDE + + +V D Q+F++ T +++ Sbjct: 288 LAQFEFVKKQSGEKPILLFDDIFDKLDETRVEKIVAMVNNDDFGQLFISDTHSQRTENIV 347 Query: 356 DSLNETAKFMRI 367 +++ K + Sbjct: 348 KMTHQSYKIFNL 359 >gi|329113487|ref|ZP_08242268.1| DNA replication and repair protein RecF [Acetobacter pomorum DM001] gi|326697312|gb|EGE48972.1| DNA replication and repair protein RecF [Acetobacter pomorum DM001] Length = 382 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 131/366 (35%), Positives = 193/366 (52%), Gaps = 4/366 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +S FRNY L +A + G+NG GKTN+LEA+S LSPGRG R A Sbjct: 13 RLLKLTLSNFRNYERLVWSPNASLLVLTGENGSGKTNLLEAVSLLSPGRGLRAAPLTQFG 72 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R+G+ + + AR+E + ++ + +R R +N IR + L W+ Sbjct: 73 RMGAIN-WGVSARIETKDEFLELGTGTQGGQERPRRVFLLNGRQIRGQEAWEDTLATVWI 131 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P MDR+FS + RRRFLDR+V A+ P H R + ++R M RNRLL + + SW S Sbjct: 132 TPQMDRLFSEGASGRRRFLDRLVMAVTPHHARELAAYDRAMTQRNRLLQTRFSEHSWLSG 191 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +EA MA V + AR E + + + FP +L + K + S E Sbjct: 192 LEASMARHAVAVAAARQETVRQICHYAQNGL--GAFPAAIATLQCAIAQKLETSPALTVE 249 Query: 246 EYA-KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ KL + R+ D+ R G HRSD +++ A STG+QK +L+GI LAHA Sbjct: 250 DWLCAKLAELREDDAARGRATFGTHRSDFLLEDLSSRQPAALASTGQQKSLLIGIVLAHA 309 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 RL+++ G PILLLDE HLD +R +L IV D + + +TGTD++ F L +A+F Sbjct: 310 RLVTDYRGQPPILLLDEPLVHLDAARRASLLEIVQDFRTTVLLTGTDQAPFAPLKHSAQF 369 Query: 365 MRISNH 370 + N Sbjct: 370 ETLKNG 375 >gi|218283253|ref|ZP_03489314.1| hypothetical protein EUBIFOR_01903 [Eubacterium biforme DSM 3989] gi|218216008|gb|EEC89546.1| hypothetical protein EUBIFOR_01903 [Eubacterium biforme DSM 3989] Length = 363 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 154/369 (41%), Gaps = 12/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + ++ L FRNY ++ F + G N GKTN++EAI FLS R FR Sbjct: 1 MNVEKLTCFHFRNYETMSFSFVPKCIHFLYGKNAQGKTNLIEAIYFLSHLRSFRTNQMDS 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G F A VE ++ + ++ + R ++ + Sbjct: 61 MIMHGCNEFC-VQAIVESNHRKEELKVIVDHQKKHLFRF----QNPVKKYSDFIGIENAI 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P +F+ RRRF+D + + + + +++L++ RN+ L + D Sbjct: 116 LFCPDDLSLFTSSPKNRRRFIDMELMKLSRTYTSTLSSYQKLLKQRNQALKQSNIDECLV 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 QM E+ I R E +N+L + E + ++ D + Sbjct: 176 QIYLDQMIEVQSVIIKQRNEFLNSLMNKARELYPFFSNEKEEIGAKYMTFIPIDPDMKSH 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E K+F+ + +TLIG HR D++ + + + S G+++ ++ + L Sbjct: 236 MKEAYDKVFE---KEKRYHQTLIGIHRDDILFELNENPV-CEVASQGQKRSFVLALKLGL 291 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 A++I +G PILLLD++ + LD+ ++ L + QIF+T T++ + N + Sbjct: 292 AQIIYEKSGQYPILLLDDVFSELDDFRKRQLIEKLPR-DMQIFITTTERLNIN-WNREVR 349 Query: 364 FMRISNHQA 372 F I + Sbjct: 350 FYDIEKGRI 358 >gi|254449439|ref|ZP_05062876.1| DNA replication and repair protein RecF [Octadecabacter antarcticus 238] gi|198263845|gb|EDY88115.1| DNA replication and repair protein RecF [Octadecabacter antarcticus 238] Length = 341 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 121/343 (35%), Positives = 181/343 (52%), Gaps = 9/343 (2%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 G NG GKTNILEA+S LSPGRG RRAS ++TR + A + + ++ Sbjct: 3 IYGPNGAGKTNILEAVSILSPGRGLRRASSEEMTRRPEALGWKVTADLTSLNKRHEVEAW 62 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 E R + D L + R+ WL+P+MDR++ + RRRFLDR + Sbjct: 63 SENGASRQTKI----DGKAAAQTALGRIGRVLWLIPAMDRLWIEAAEGRRRFLDRATLSF 118 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 +P H + +E+ MR RNRLL + D+ W +++E QMA+ G +I+ R++ I+ L+ Sbjct: 119 EPMHADAALTYEKAMRERNRLLKDMVRDAHWYTALERQMADAGAQIHRNRMQAIDLLTD- 177 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 + + FP L+LT A L R D + RTLIGPHR+ Sbjct: 178 -AQQAAQTAFPIALLTLTHSDPVCDAPDDPAAL---LAALAGNRPRDMAAGRTLIGPHRA 233 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 DL + K + STGEQK +L+ + LA+AR +++ G PILLLDE++AHLD +R Sbjct: 234 DLGAIFAAKDVPAKDCSTGEQKALLISLILANARALADDFGAPPILLLDEVAAHLDATRR 293 Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374 AL+ +T +G+Q FMTGT +F L A++ ++ + Sbjct: 294 AALYSEITALGAQAFMTGTGPELFGELGTAAQYAYVTEENGVS 336 >gi|78045559|ref|YP_361734.1| recombination protein F [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|97181094|sp|Q3BZS9|RECF_XANC5 RecName: Full=DNA replication and repair protein recF gi|78033989|emb|CAJ21634.1| DNA replication and repair protein RecF [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 368 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 77/369 (20%), Positives = 144/369 (39%), Gaps = 9/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MHVVRLSIHRLRRFHTVELHPSSTLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ EG + + + R +++ + + L L + Sbjct: 61 IQQGANDLEVFVEWKEGNGAAGERTRRAGLRHRGQEWTGRLDGEDVAQLGALCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTMWRRYARALKQRNALLKQG-AQPRMLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R + L ++ P + LS F G Sbjct: 180 AWDHELAESGESLTSRRTRYLERLQERLVPVADAI-APALGLSALTFAPGWKRHEVS--- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T GPHR+D + + A S G+ K+ + LA A Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWVPSFQALPGRDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 + G P++ LD++ + LD + + + + +Q+ +T T+ + Sbjct: 293 EDFAYERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATETPPGLADAGALLQ 352 Query: 364 FMRISNHQA 372 + + Sbjct: 353 QFHVEHGHI 361 >gi|297625207|ref|YP_003686970.1| DNA replication and repair protein recF [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296920972|emb|CBL55509.1| DNA replication and repair protein recF [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 433 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 83/402 (20%), Positives = 152/402 (37%), Gaps = 44/402 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FR+Y + +L ++FVG NG GKTN++EA+ +LS R ++ A + Sbjct: 1 MFVDHLELKDFRSYEAAKLDIGPGVSVFVGPNGHGKTNLVEAVEYLSTLSSHRVSADAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V G + + ++LE R+ +IN +R + + LR Sbjct: 61 IRAGTSQAIVRALVVAGRDDPRKLLLELEINAGRAN-HARINRAPVRRMRDFIGALRTVV 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P + G +RR FLD +V PR D++R++R RN LL Sbjct: 120 FSPEDLAMVKGDPTDRRAFLDALVITRWPRLAGVKSDYDRVLRQRNTLLKTLARRSSRVD 179 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------ 230 D + ++A+ G ++ AR+ ++ L + ++ Sbjct: 180 GGDVATLDVWNERLAQFGAELLAARLATLSDLMPYARASYAAIAPVNNRVDARYKSSLSG 239 Query: 231 ----------FLDGKFDQSFCALKEE-------------YAKKLFDGRKMDSMSRRTLIG 267 G+ ++ E + R + TL+G Sbjct: 240 LSELLGYATDGAPGELPEAPDTDDEVRTPAPGPDQLAVLMMDAMAARRGDELARGVTLVG 299 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 PHR D+ + + S GE + + + L ++ P+L+LD++ A LD Sbjct: 300 PHRDDVTLTI-GTLPAKGYASHGESWSLALALRLGSLDML-RADDVEPVLVLDDVFAELD 357 Query: 328 EDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 +R+ L V Q+ +T V L + + Sbjct: 358 VTRRDRLADAVAKAE-QVLVTAAVGSDVPGQL--NGQRFDVD 396 >gi|156742186|ref|YP_001432315.1| DNA replication and repair protein RecF [Roseiflexus castenholzii DSM 13941] gi|189039636|sp|A7NF69|RECF_ROSCS RecName: Full=DNA replication and repair protein recF gi|156233514|gb|ABU58297.1| DNA replication and repair protein RecF [Roseiflexus castenholzii DSM 13941] Length = 394 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 95/391 (24%), Positives = 178/391 (45%), Gaps = 27/391 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FRNY L L + T+ G N GKT +LEAI FL+ R R + ++ Sbjct: 1 MYVTHLSLRDFRNYERLDLNLEPGVTLLYGPNAAGKTTVLEAIYFLATTRSPRAGADREL 60 Query: 65 TRIGSPS------FFSTFARVEGMEGLADISIKLETRDDR--------SVRCLQINDVVI 110 R + F V +G + + ++ R + +++ ++I+ + Sbjct: 61 VRFEAQGDLGVPPFARLVCDVVRADGYVRLEVVVQRRAEEESAIGATPTIKTVRIDRKAV 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 R +D L +LR+ P+ + +G ERRR+LD + ID R+ R + ++++++ RN Sbjct: 121 RALD-LVGNLRVVLFTPADIALVTGAPAERRRYLDVTLSQIDGRYVRTLAHYQKVVQQRN 179 Query: 171 RLLTEG-------YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 LL + + + ++A G + R+ + L++L + + Sbjct: 180 SLLRAWREGRRPLRYADDELAFWDRELAMAGAYLLRERLHAVVDLNALAGPLYCRMSGGD 239 Query: 224 IKLSLTGFLDGKFDQSFC---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 L+L S A+++ + L R + +TLIGPHR DL++ Sbjct: 240 TPLTLAYQSSVAGIDSVTDSRAIEQAFLAHLTRLRDDEIGRGQTLIGPHRDDLLIAVGGV 299 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 I +GS G+Q+ + + L A+L+ TG AP+LLLD++ + LD ++R+ + I+ Sbjct: 300 PIGA-YGSRGQQRSATLSLKLGEAKLMRIRTGDAPVLLLDDLLSELDAERRSHVQDILER 358 Query: 341 IGSQIFMTGTDKSVFD-SLNETAKFMRISNH 370 Q +T T FD A+ R+ + Sbjct: 359 PDQQTIVTATGTDDFDLKFLTRARRWRVESG 389 >gi|295691339|ref|YP_003595032.1| DNA replication and repair protein RecF [Caulobacter segnis ATCC 21756] gi|295433242|gb|ADG12414.1| DNA replication and repair protein RecF [Caulobacter segnis ATCC 21756] Length = 387 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 204/378 (53%), Gaps = 16/378 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 + L +++FR+Y RL + G NG GKTN+LEAIS L+PG+G R A+ A+V Sbjct: 5 ALLSLTLTDFRSYERARLETSGRSVYLFGPNGAGKTNLLEAISLLTPGKGLRGANLAEVG 64 Query: 66 RI--GSPSF--FSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R G + ++ A VE G + I +E + S R ++++ + L H+ Sbjct: 65 RRLPGEATGRPWAVAAEVESGPDAPVRIGTGVE-QGGASRRTVRLDGETV-SPGRLADHV 122 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TE 175 R WL P+ DR+F + ERRRF DR+VFA +P+H +++ R R RLL Sbjct: 123 RPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPQHAANANAYDKAQRERMRLLIEAVERG 182 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 D++W +++EA++AE G + AR + AL + I + FP +L+LTG + Sbjct: 183 APPDATWLNALEARLAESGALMAQARARTLQALQAEIDGRGDR-PFPQARLTLTGDWEKL 241 Query: 236 FDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + F ++E+ A L R D + R L GPHR DL + + +K A STGEQK Sbjct: 242 ALEGVPFAEIEEKLAAALLSARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQK 301 Query: 294 VVLVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +++ + LA ARL + P++LLDE++AHLD +R AL +T + Q F+TGTD+ Sbjct: 302 ALILNLVLAQAARLSRAESAPNPVILLDEVAAHLDLARRAALADELTALKLQAFLTGTDE 361 Query: 353 SVFDSLNETAKFMRISNH 370 S+FD L A +R+ + Sbjct: 362 SLFDHLKGRALGVRVCDA 379 >gi|169830222|ref|YP_001716204.1| DNA replication and repair protein RecF [Candidatus Desulforudis audaxviator MP104C] gi|226737788|sp|B1I1H6|RECF_DESAP RecName: Full=DNA replication and repair protein recF gi|169637066|gb|ACA58572.1| DNA replication and repair protein RecF [Candidatus Desulforudis audaxviator MP104C] Length = 360 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 145/370 (39%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + FRN+ L + A I G N GKTN +EA+ F G FR ++ Sbjct: 1 MRLTRIKAGNFRNFQHLDVQPAAGLNIVRGRNAQGKTNFIEAVFFALRGHSFRSLRDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S F A +EG +G + +L + V + EL L Sbjct: 61 VTWGQESAF-VEAELEGKDGRTRVRAELNPAGKKIVWA----GEPVGKA-ELAVRLGTVL 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSW 182 P + G ERRRFLD + P + + + R + RN LL G S Sbjct: 115 FTPDDLSLIKGGPRERRRFLDLELGIFVPGYLTALQLYRRALEQRNHLLRMGGGRRYSEL 174 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ + G+ + R+E++ + L + + + G + Sbjct: 175 LDLWTDEVCKYGMMLLSGRLEILKEFAPLACRLFGAWAGEELAVRYRSSV-GLSNGVRTP 233 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + + L R+ + + +T GPH DL K S G+Q+ V++ + LA Sbjct: 234 GAGDLRETLAAVRQDEIRAGQTQAGPHLDDLAFMVNGKE-GRPFASQGQQRSVVLALKLA 292 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 L TG AP++LLD++ D ++R+ + + + Q+F+T ++ + + Sbjct: 293 QVFLWKRHTGEAPVVLLDDLLFEFDRERRDKVLETLQN-DVQVFITTGER-----VLSGS 346 Query: 363 KFMRISNHQA 372 + + + Sbjct: 347 RVFCVHSGNI 356 >gi|313676601|ref|YP_004054597.1| DNA replication and repair protein recf [Marivirga tractuosa DSM 4126] gi|312943299|gb|ADR22489.1| DNA replication and repair protein RecF [Marivirga tractuosa DSM 4126] Length = 367 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 83/378 (21%), Positives = 165/378 (43%), Gaps = 23/378 (6%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++K++ + +++F+NY F F+G NG+GKTN+L+AI +L+ + A D Sbjct: 3 KMKLQNIRLAQFKNYPQANFSFVDGINCFLGRNGIGKTNLLDAIYYLAFTKSAFNAIDKD 62 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 +FFS A E + ++ + + + VR + E L + Sbjct: 63 NILH-EEAFFSIKANFEVEDKNIEMLCAVRLGEKKVVRW---GGKEYEKLSEHIGKLPLV 118 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 +VP I S RR+F D ++ +D + + ++++ L++ RN LL + F Sbjct: 119 MIVPQDTDIVREASEMRRKFFDNLLCQLDQEYLKLLVNYNHLLKQRNALLKSFLEKNRFS 178 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + + M L +KI+ R +++ + E+ + + ++++ Sbjct: 179 ADQLAPYDELMIPLAMKISDERNKLMENFLPIFQEFYKDLSDNQEEVAINY--------- 229 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + + + + D RT +G H+ D + K + GS G+QK ++ + Sbjct: 230 DTRVTKSFQSDFKGQHQKDFRQGRTTMGIHKDDYVFLSEGKPVK-KFGSQGQQKSFVIAL 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT----DKSV 354 LA L+ +T P+LLLD+I LD+ + L +++ D QIF+T K Sbjct: 289 KLAQFELLKSTKNQKPLLLLDDIFDKLDDKRIAYLLKMMADGRFGQIFLTDARPERSKEY 348 Query: 355 FDSLNETAKFMRISNHQA 372 ++ KF + ++A Sbjct: 349 LKKIDTEKKFFELDLNRA 366 >gi|119714276|ref|YP_921241.1| recombination protein F [Nocardioides sp. JS614] gi|166220721|sp|A1SCL9|RECF_NOCSJ RecName: Full=DNA replication and repair protein recF gi|119534937|gb|ABL79554.1| DNA replication and repair protein RecF [Nocardioides sp. JS614] Length = 420 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 91/425 (21%), Positives = 158/425 (37%), Gaps = 64/425 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+YA+ + T F+G NG GKTN++EAI +LS R AS A + Sbjct: 1 MYVAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A V +++E RS R ++N + +L +R Sbjct: 61 VRAGADQAVVRAAVVRDGRTAV---LEVELNPGRSNRA-RVNRSPLPRARDLVGLVRTVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G +RRRFLD ++ PR D++R++R RN LL Sbjct: 117 FSPEDLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQRNTLLKTARKGGFARK 176 Query: 178 ---------------------------------------FDSSWCSSIEAQMAELGVKIN 198 + +A +A G ++ Sbjct: 177 GGFARKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELL 236 Query: 199 IARVEMINALSSLIMEYVQKENFPH----IKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 R+ ++ AL + + + ++ D + L E ++ Sbjct: 237 AERLALVEALRPYVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEVERR 296 Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-----IAHGSTGEQKVVLVGIFLAHARLISN 309 R + +L+GPHR +L++ + + S GE + + LA L+ Sbjct: 297 RGDELDRGVSLVGPHRDELLLTLGHGSPDSRLPVKGYASHGESWSFALALRLAAYDLL-R 355 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 G PIL+LD++ A LD ++R L +V Q+ +T V L + Sbjct: 356 ADGDDPILILDDVFAELDTERRAQLADLVAGAE-QVLVTAAVAADVPAGL--AGARFAVG 412 Query: 369 NHQAL 373 N + L Sbjct: 413 NGEVL 417 >gi|289667647|ref|ZP_06488722.1| recombination protein F [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 368 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 79/370 (21%), Positives = 149/370 (40%), Gaps = 13/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ L + + G+NG GKT++LEA+ ++ GR FR + Sbjct: 1 MHVVRLSIHRLRRFQTVELHPASALNLLTGNNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ EG + + + R +++ + + L L + Sbjct: 61 IQQGANDLEVFVEWKEGSGVAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPRMLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R+ + L ++ P + LS F G Sbjct: 180 AWDHELAESGETLTSRRMRYLERLQDRLIPVAGAI-APSLGLSALAFAPGWKRHEVS--- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T GPHR+D + + A S G+ K+ + LA A Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWMPRFDVLPGKDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA-- 362 + G P++ LD++ + LD + + + + +Q+ +T T+ L + A Sbjct: 293 EDFAFERGEWPVIALDDLGSELDRHHQARVLQRLVSAPAQVLITATET--PPGLVDAAAL 350 Query: 363 -KFMRISNHQ 371 + + + Q Sbjct: 351 LQRFHVEHGQ 360 >gi|237784640|ref|YP_002905345.1| DNA replication and repair protein RecF [Corynebacterium kroppenstedtii DSM 44385] gi|237757552|gb|ACR16802.1| DNA replication and repair protein RecF [Corynebacterium kroppenstedtii DSM 44385] Length = 429 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 88/397 (22%), Positives = 154/397 (38%), Gaps = 41/397 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + FR++ L L T+F G NG GKTN++EA+ +++ R ++ A + Sbjct: 1 MYIRALQLRNFRSWPELDLHLGPGITVFSGPNGHGKTNVVEALDYVAHLGSHRVSTDAPL 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + S A G E A + IK R QIN + +L ++ Sbjct: 61 VREGREYTTVSATAINSGRELTAHMLIK-----ARGSNKAQINRAPCKSPRQLLGIVKTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178 P + G RRRFLD ++ PR D+++++R RN LL Sbjct: 116 LFSPEDLALVRGEPEHRRRFLDDLLIGRFPRWAGTRSDYDKILRQRNTLLKRASRTLRQG 175 Query: 179 -------DSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLS 227 DS+ + ++ +A G ++ R+ + + LS + Q+ +++ Sbjct: 176 YGGGNDSDSALDTLDTWDSHLAAAGAQVMAQRIVLAHVLSPYVKNAYQRLAPESRPAQIT 235 Query: 228 LTGFLDGKFDQ--------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 +D + + ++ +L R D + GPHR D+ Sbjct: 236 YRSTVDKALVEAGITPETVANDVAGATPVIEAVLLSELARRRDTDIQRGTSTCGPHRDDV 295 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 + + S GE + + LA G PIL+LD++ A LD +R A Sbjct: 296 EL-LLGTQPARGYASHGESWSFALALRLASFE-WQREQGTDPILILDDVFAELDAARRRA 353 Query: 334 LFRIVTDIGSQIFMTGTDKSVF--DSLNETAKFMRIS 368 L + D Q +T D +N + + + Sbjct: 354 LATVAKDAE-QTLVTAAVGDDLPQDLVNSDIRVLTVE 389 >gi|172039683|ref|YP_001799397.1| recombination protein F [Corynebacterium urealyticum DSM 7109] gi|171850987|emb|CAQ03963.1| DNA replication and repair protein RecF [Corynebacterium urealyticum DSM 7109] Length = 472 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 93/402 (23%), Positives = 162/402 (40%), Gaps = 47/402 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++ L L D T+F G NG GKTNI+EA+ +L+ R + + + Sbjct: 1 MFVRSLELHDFRSWRELSLQLDPGVTVFSGPNGHGKTNIVEALGYLAHLGSHRVNTDSAL 60 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + S A E A I+I+ IN + EL +R + Sbjct: 61 VREGQQIARVSATAVNHNRELTAHIAIR-----GHGSNRAHINRTQLATTSELLGIVRTT 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178 P + G +RR+FLD ++ A PR D+++ +R RN LL + Sbjct: 116 LFSPEDLALVRGEPEQRRKFLDEIMVARYPRLAAVKADYDKSLRQRNALLRNNAYALRIA 175 Query: 179 ---------DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLS 227 + +AQ+A LG +I ARV++ + L+ + + + ++ Sbjct: 176 PENDAERLSALATLDVWDAQLAALGGQIMSARVQIAHDLAPHVAQTYARLAPESRPAHMA 235 Query: 228 LTGFLDGKFDQ---------------------SFCALKEEYAKKLFDGRKMDSMSRRTLI 266 T +D Q S + + R + TLI Sbjct: 236 YTSTVDADLAQVGVLLGEAELERDPAAELALLSPEVAEATLLQAYARKRTQEVDRGTTLI 295 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 GPHR DL++ + S GE + + L A + G P+++LD++ A L Sbjct: 296 GPHRDDLVLMLGTQPAK-GFASHGESWSFALALRLG-AFFMQREDGVEPVVILDDVFAEL 353 Query: 327 DEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367 D +R L ++T+ Q+ +T + + L + A F + Sbjct: 354 DSSRRQQLVGLLTEAE-QVLITAAVGEDIPAELRDIATFHDV 394 >gi|229818506|ref|YP_002880032.1| DNA replication and repair protein RecF [Beutenbergia cavernae DSM 12333] gi|259563356|sp|C5BUP6|RECF_BEUC1 RecName: Full=DNA replication and repair protein recF gi|229564419|gb|ACQ78270.1| DNA replication and repair protein RecF [Beutenbergia cavernae DSM 12333] Length = 397 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 157/403 (38%), Gaps = 39/403 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FR+YA L + + T FVG NG GKTN++EAI +L R + A + Sbjct: 1 MYVSDLALTDFRSYADLVIGLEPGITAFVGPNGQGKTNLVEAIGYLGTFSSHRVSGDAAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ R + + ++LE R+ R +++ + V E R Sbjct: 61 VRWGAE---RAVVRAKVVRRARPTLVELEIVAGRANRA-RVDRSPVSRVREAAGIARSVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G RRRFLD ++ + PR ++ER++R R LL Sbjct: 117 FAPEDLALVKGDPDGRRRFLDDLLVQLSPRLAGVRSEYERVLRQRTALLKSAGPARRRSG 176 Query: 181 -------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + +A G ++ ARV ++ L + ++ + + ++ Sbjct: 177 DGEPAALRTLDVWDGHLARAGAELVAARVRLVQDLRPHVGATYEQVSAAQSEARISYRAS 236 Query: 234 GKFDQSFCA-----------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 + + A ++ + + R + +L+GPHR DL++ Sbjct: 237 VEEARPDDAPTEVVESVETELTRADLVEARLLEAMARLRTREIERGVSLVGPHRDDLVLT 296 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLIS----NTTGFAPILLLDEISAHLDEDKRN 332 D + S GE + + LA L+ G P+L+LD++ A LD +R Sbjct: 297 LADMPAK-GYASHGESWSYALALRLASYALLRDDGEAGGGGEPVLVLDDVFAELDARRRT 355 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 L IV Q+ +T E A+ + + L + Sbjct: 356 RLASIVASAE-QVLVTAAVAEDVPEELEGARM-DVMGGEVLRV 396 >gi|227538439|ref|ZP_03968488.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33300] gi|227241721|gb|EEI91736.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33300] Length = 368 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 160/377 (42%), Gaps = 21/377 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ F+NY L F + F G+NG GKTN+L+AI +LS + + + Sbjct: 1 MWLKQLSVLNFKNYTESALEFLPEVNAFAGENGAGKTNLLDAIHYLSLCKSYFNPIDSQH 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G +F E + IS L+ + + + + + + + Sbjct: 61 IKQGMD-WFMVQGSFENDTRIDVISCSLKKNQKKQFKKNKKD---YPRLADHIGQFPLVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 + P+ I + S ERR+F+D ++ D + ++I + ++M RN +L + G D Sbjct: 117 ISPNDSMIITDGSEERRKFMDNVISQTDHHYLDKLITYNKVMLQRNVMLKQARESGQLDL 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E+G +I R + + ++ ++SL Sbjct: 177 GLLEVLNLQLVEVGAQIFEKRQQFMKDFLPEFEKHYHFLTESAEQVSLVY--------ES 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + ++ L + D RT G H+ DL+ + GS G+QK L+ + Sbjct: 229 PLMTVDFQDLLDRNLERDRALERTSQGIHKDDLLFTIHEGMPLKKFGSQGQQKSFLIALK 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS----VF 355 LA + + GF P+LLLD+I LDE + L ++V+ D QIF+T TD +F Sbjct: 289 LAQYSFLQSRKGFKPLLLLDDIFDKLDERRTRKLMQMVSEDDFGQIFLTDTDSERVQRIF 348 Query: 356 DSLNETAKFMRISNHQA 372 + + + + I Sbjct: 349 EEIAQPIRIFDIKGGTI 365 >gi|163787893|ref|ZP_02182339.1| DNA replication and repair protein RecF, ABC family ATPase [Flavobacteriales bacterium ALC-1] gi|159876213|gb|EDP70271.1| DNA replication and repair protein RecF, ABC family ATPase [Flavobacteriales bacterium ALC-1] Length = 359 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 154/372 (41%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ ++N+ S FDA+ FVG NGVGKTN L+AI L+ G+ + Sbjct: 1 MNLNTLSLVNYKNFESQVFDFDAKINCFVGANGVGKTNALDAIYHLAFGKSYFNPIALQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FF E + I + L+ + ++ N E + + Sbjct: 61 INHNAE-FFVVDGNFTKNERVEKIIVSLKRG---QKKIIKRNGKAYEKFSEHIGFIPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S RR+F+D ++ D + +I + +++ RN LL F+ Sbjct: 117 ISPADRDLIIEGSDTRRKFIDSVISQSDKTYLIELISYNKVLSQRNALLKYFALNNTFNR 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ G +I R + + E + + + L D Sbjct: 177 DTLTIYNEQLHTYGTEIFKKRDAFLKIFIPIFKERYEAISQSKESIDLNYKSD------- 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + L + D + T +G H+ DL+ I GS G+QK L+ + Sbjct: 230 -LFEGKLEDLLNNNINKDKTLQYTSVGTHKDDLMFLIDSFPIK-KFGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTD----KSVF 355 LA I +G +PILLLD+I LDE++ + +V D QIF++ T ++V Sbjct: 288 LAQFDFIKQQSGVSPILLLDDIFDKLDENRVAQIISLVDDEHFGQIFISDTHAERTENVI 347 Query: 356 DSLNETAKFMRI 367 ++++ K ++ Sbjct: 348 KQIHQSYKIFKL 359 >gi|90415376|ref|ZP_01223310.1| recombination protein F [marine gamma proteobacterium HTCC2207] gi|90332699|gb|EAS47869.1| recombination protein F [marine gamma proteobacterium HTCC2207] Length = 370 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 160/370 (43%), Gaps = 13/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I + RN +++L Q I G NG GKT++LE+I L GR FR V Sbjct: 1 MFLSKLDIFQVRNLQAVQLSCHPQANIIFGANGSGKTSLLESIYLLGRGRSFRHRDLRVV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + AR+ + + + R + +I+ ++ +L L + Sbjct: 61 VNSNAAELIVS-ARLNRDVSGSSHQLGI-KRTSKGQFEARIDGQALQSAVQLVSELPLQL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + G ++RR+FLD VF ++ + F++ ++ RN+LL G S Sbjct: 119 IDAHSFMLLEGGPLQRRQFLDWGVFHVEHTYTEVWRRFQKTLKQRNQLLRHGRMGEDMLS 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + A++ L +I R ++ LS I + + ++SL + +S + Sbjct: 179 TWTAELIPLCEQITEFRQAYLSQLSKQIQIALSAFDGLG-EISLEYYCGWDDSRSLQDVY 237 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + D ++ T G HR+D+ + D H S G+ K+++ + LA A Sbjct: 238 -------VQDQARDIATKTTNHGAHRADIRIKV-DGQPAADHLSRGQIKLLVYALKLAQA 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA-- 362 G + + LLD++ A LD R + + D+G Q F+TG DK F+ L E Sbjct: 290 GHYREKLGESCLFLLDDLPAELDYQHRGQVIAYLNDLGCQYFITGVDKQDFECLLEKMPH 349 Query: 363 KFMRISNHQA 372 K + + +A Sbjct: 350 KMFHMEHGEA 359 >gi|260912286|ref|ZP_05918837.1| recombination protein F [Prevotella sp. oral taxon 472 str. F0295] gi|260633587|gb|EEX51726.1| recombination protein F [Prevotella sp. oral taxon 472 str. F0295] Length = 371 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 149/375 (39%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++I ++N ++ L + F+G NG GKTN L+A+ +LS R + + Sbjct: 1 MILNSISIINYKNLRAVNLQLSPKTNCFIGHNGSGKTNFLDALYYLSFCRSAYNPIDSQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + + ++ ++ + + N + + + + + Sbjct: 61 ITHEQDFFVIEGDYLSEVGDTENVYCGMKRGAKKQFKR---NKKTYKRLSQHIGLIPLVL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P+ + G S ERRR +D ++ D + + + ++ RN LL E D + Sbjct: 118 VSPADAALIDGGSEERRRLMDMVIAQYDTTYIEALTRCNKALQQRNALLRMEAEPDLALL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E +MA G + + R + + ++ + ++SL + Sbjct: 178 ELWEEEMAAQGEVVYVKRAAFVEEFIPVFQNIHERISGGSEQVSLRYISHCQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + + R D +L G HR DL + + GS G+ K + + LA Sbjct: 230 RGDLLEVIRKDRHKDRAVGYSLHGVHRDDLEMLIDGYQLKRE-GSQGQSKTYALAMKLAQ 288 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + + P+LLLD+I LD + + +V+ D QIF+T T++ D + ++ Sbjct: 289 FDFLKRTASKTTPLLLLDDIFDKLDSQRVERIVELVSGDSYGQIFITDTNREHLDRILQS 348 Query: 362 A----KFMRISNHQA 372 K + N + Sbjct: 349 GTTEYKLFYVENGEI 363 >gi|157827903|ref|YP_001494145.1| recombination protein F [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932591|ref|YP_001649380.1| recombination protein F [Rickettsia rickettsii str. Iowa] gi|166221859|sp|A8GQG2|RECF_RICRS RecName: Full=DNA replication and repair protein recF gi|189039635|sp|B0BVU8|RECF_RICRO RecName: Full=DNA replication and repair protein recF gi|157800384|gb|ABV75637.1| recombination protein F [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907678|gb|ABY71974.1| DNA replication and repair protein [Rickettsia rickettsii str. Iowa] Length = 360 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 119/361 (32%), Positives = 189/361 (52%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A A+V + Sbjct: 6 LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCK 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S A ++ GLA+ + + + +R R + N+ I +EL+K + WL Sbjct: 66 T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W I Sbjct: 122 PHMEGIFTSGSNDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKENIVSF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T APILLLDE+ HLD+ +R L +T + Q+++T T+ ++ A+ ++ Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFANKAQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|34581007|ref|ZP_00142487.1| RecF protein [Rickettsia sibirica 246] gi|28262392|gb|EAA25896.1| RecF protein [Rickettsia sibirica 246] Length = 360 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 189/361 (52%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A A+V + Sbjct: 6 LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCK 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S A ++ GLA+ + + + +R R + N+ I +ELNK + WL Sbjct: 66 T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELNKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W I Sbjct: 122 PHMEGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T APILLLDE+ HLD+ +R L +T + Q+++T T+ ++ A+ ++ Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFATKAQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|288928367|ref|ZP_06422214.1| RecF protein [Prevotella sp. oral taxon 317 str. F0108] gi|288331201|gb|EFC69785.1| RecF protein [Prevotella sp. oral taxon 317 str. F0108] Length = 371 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 73/375 (19%), Positives = 147/375 (39%), Gaps = 19/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++I ++N ++ L + F+G NG GKTN L+A+ +LS R + + Sbjct: 1 MILNSISIINYKNLRAVNLQLSPKTNCFIGHNGSGKTNFLDALYYLSFCRSAYNPIDSQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + ++ ++ + + N + + + + + Sbjct: 61 ITHEQDFFVLEGDYISEGGDAENVYCGMKRGSKKQFKR---NKKAYKRLSQHIGLIPLVL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P+ + G S ERRR +D ++ D + + + ++ RN LL E D + Sbjct: 118 VSPADAALIDGGSEERRRLMDMVIAQYDTTYIEALTRCNKALQQRNALLRMEAEPDLALL 177 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 E +MA G + R + + ++ + ++SL G+ Sbjct: 178 ELWEEEMAAQGKVVYAKRAAFVEEFIPVFQSIHERISGGSERVSLRYISHGQ-------- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + + R D +L G HR DL + + GS G+ K + + LA Sbjct: 230 RGDLLDVIRKDRHKDRAVGYSLHGVHRDDLEMLIDGYQLKRE-GSQGQSKTYALAMKLAQ 288 Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361 + + P+LLLD+I LD + + +V+ D QIF+T T++ D + ++ Sbjct: 289 FDFLKRTASKTTPLLLLDDIFDKLDSQRVERIVELVSGDSYGQIFITDTNREHLDRILQS 348 Query: 362 A----KFMRISNHQA 372 K + N + Sbjct: 349 GTTDYKLFYVENGEI 363 >gi|268610500|ref|ZP_06144227.1| recombination protein F [Ruminococcus flavefaciens FD-1] Length = 382 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 162/377 (42%), Gaps = 16/377 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + I F+N + D ++ I VG N GKTN+LEA+ LS + FR + D Sbjct: 1 MIVTYAEIDGFKNLKGVSFAPDPKYNIIVGANAQGKTNLLEAMWILSGCKSFRGSKEKDY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S+ +V+ I+ ++ + S + + +N V R L + Sbjct: 61 ICLDGQR-MSSAVKVQDSVREQKITFEM-AKGGNSPKLIHLNGVKQRGTRALFDVFKCIA 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 +P I G +RR F+D ++P + +M RN LL E + Sbjct: 119 FIPDDTDIIKGSPEKRRSFIDMAASQLNPMFVMHLNKNNAIMNQRNALLKEISQRNASAD 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----FLDGKFD 237 + Q ++ G I+ R E ++ ++ + + +LSL + F+ Sbjct: 179 VLEIWDRQASKEGAVISWMRNEYVSKINEICGRLYNTISGGAEELSLEYRSNVYKPEDFE 238 Query: 238 QSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + EE Y ++L + + D + T G +R ++ + + GS G+ K Sbjct: 239 KPIGEEAEELYYRRLRETSEYDIRTGSTHSGVNRDEISIKI-NGVSARDFGSQGQIKSAA 297 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + LA A + + AP++ LD++ LDE+++ +F I+ D+ Q+F+T ++S Sbjct: 298 LVMKLAQAEIYMKKSKDAPVVFLDDVMGELDENRQRFVFDIIRDM--QVFVTTPNESAL- 354 Query: 357 SLNE-TAKFMRISNHQA 372 L E K +RIS + Sbjct: 355 -LPEIKGKILRISGGRI 370 >gi|109896335|ref|YP_659590.1| DNA replication and repair protein RecF [Pseudoalteromonas atlantica T6c] gi|123361468|sp|Q15ZZ5|RECF_PSEA6 RecName: Full=DNA replication and repair protein recF gi|109698616|gb|ABG38536.1| DNA replication and repair protein RecF [Pseudoalteromonas atlantica T6c] Length = 363 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 152/373 (40%), Gaps = 19/373 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + I RN + +G NG GK++ILEAI +L GR FR + + +V Sbjct: 1 MKLDSVQIRNLRNLQHVTFKPSHGVNFILGINGSGKSSILEAIHYLGFGRSFRTSKHKNV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + SF E +E + L + +V + IN + V +L L + Sbjct: 61 IQNEQESF---TVFCECLEDSTTQRLGLSRSINDTV-SVSINGIKGNKVSDLVSLLPVQI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P I G RR+++D +F ++ + RL++ N L + GY + Sbjct: 117 FTPQSSDILLGAPKLRRKYIDWCLFHVEHSFLTCSNAYSRLLKHNNALCRKQQVGYANPQ 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 +A+ G ++ R M+ L LI + + P + ++ + + Sbjct: 177 RV-YWTDLLAQYGSELTEFRNAMMTRLIPLITSNLA-QFLPEFCVEISYYRGWEKGL--- 231 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 E + L D + +GPH++D+ K S G+ ++++ + L Sbjct: 232 ----ELNEALTKSADRDYKNGYISVGPHKADVRFKISGKPAQEVL-SRGQLRMLVAALQL 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-- 359 A + + + T I LLD++ A LD KR + + +Q+F+T ++ + ++ Sbjct: 287 ATTQCLMSYTQKTCIFLLDDVGAELDAAKREVFIDRLLESNTQLFVTAIEEHQLEFIDKY 346 Query: 360 ETAKFMRISNHQA 372 + K + + Q Sbjct: 347 QNKKMFHVEHGQV 359 >gi|157825165|ref|YP_001492885.1| recombination protein F [Rickettsia akari str. Hartford] gi|166221858|sp|A8GLV2|RECF_RICAH RecName: Full=DNA replication and repair protein recF gi|157799123|gb|ABV74377.1| recombination protein F [Rickettsia akari str. Hartford] Length = 360 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 119/361 (32%), Positives = 189/361 (52%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A D+ + Sbjct: 6 LHSLSLANYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLDDICK 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + A ++ GLA+ S ++ +R R + N+ I +EL+K + WL Sbjct: 66 A-SEDYCIVKALLQSQLGLAEFSTHIKRNSNR--RITEYNESKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ S +RR+FLDR+V+ P+H + +E M RN++L E D +W I Sbjct: 122 PQMEGIFTSGSSDRRKFLDRIVYNFYPKHAELVSKYEYYMHERNKILAEDIRDDNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA++ I R++ + + I E + FP LS+ G ++ + L Sbjct: 182 EGKMADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQRILDGEENLVNF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + T APILLLDE+ HLD+ +R L T + Q+++T T+ ++ A+ ++ Sbjct: 300 VIKLTKIAPILLLDEVFVHLDDTRRQYLIEFFTTLSMQLWVTDTNLEGIENFASKAQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|159027176|emb|CAO86808.1| recF [Microcystis aeruginosa PCC 7806] Length = 375 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 88/380 (23%), Positives = 177/380 (46%), Gaps = 17/380 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNYA L F+++ TI +G+N GK+N+LEAI L+ + R + D+ Sbjct: 1 MYLEHLHLHSFRNYAEQLLKFESKKTILLGNNAQGKSNLLEAIELLATLKSHRVSKDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S S FARV + G +++S+ L + R + + +R + + Sbjct: 61 V-LESDSEARIFARVNRLYGASELSLILRSSGR---RTVIRDRQPLRRHLDFLGVINAVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 + G RR +LD ++ ++P + + + +++R RN LL E Sbjct: 117 FSSLDLDLVRGGPEARRDWLDTLLIQLEPLYVHILQQYNQVLRQRNALLKEIRKQELEGK 176 Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 Y D S + Q+AE G ++ R ++ L L ++ + + L L + Sbjct: 177 VYADLSQLKLWDLQLAETGSRVTRRRARVLQRLIPLAQKWHESISGKTEYLELQYIPNVP 236 Query: 236 F-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + ++ + K+ R + +++GPHR ++ ++ ++GS G+Q+ Sbjct: 237 WVEDDVNGVQTAFLDKIETRRLAEKQLGTSVVGPHRDEVDF-LINQNPAKSYGSQGQQRT 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 +++ + LA +L+ G P+LLLD++ A LD +++N L + D Q +T T S Sbjct: 296 LVLALKLAELQLLEQIIGEPPLLLLDDVLAELDIERQNQLLDAIED-RFQTLITTTHLSS 354 Query: 355 FDS-LNETAKFMRISNHQAL 373 F+S ++++ + Sbjct: 355 FESRWLQSSQIFSVKKGHIF 374 >gi|320527131|ref|ZP_08028318.1| putative recombination protein F [Solobacterium moorei F0204] gi|320132459|gb|EFW25002.1| putative recombination protein F [Solobacterium moorei F0204] Length = 363 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 162/373 (43%), Gaps = 16/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + + FRNY + + F+ + G N GKTN+LE++ +LS R R + Sbjct: 1 MYIKNIQLRNFRNYENAYIEFNPSINLITGANAQGKTNLLESLVYLSLTRSHRIVDDKKL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R V+ E ++ I + + L I+ ++ E L + Sbjct: 61 IRNDEMFAGIDCKFVDTDEKDIEVIIH------PNGKTLMIHKRPLKKSSEFIGLLNVVL 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P RIF+ ERRR +++ + + ++ + F+ ++ RN LL D ++ Sbjct: 115 FSPDDLRIFNDQPKERRRVMNQEITKVSTKYLLSLNQFQMYLKDRNALLKSDKIDFNYLD 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++ QM+++ I R + I + S+I + Q+ + IKL + F + ++ Sbjct: 175 ILDEQMSKVEAHIIRERRKFIEVIQSVISKIYQELSGSQIKLEIAY---KTFVEDTEEIE 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ + + R+ D T +G H DLI D+ + I S G++++V++ LA Sbjct: 232 EKILEIHRESRQKDMEYHITKVGIHLDDLIFKMDDQNL-IYFASQGQKRMVMLSFKLALL 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 I T PILLLD++ + LD ++ L ++V Q +T T+ + A Sbjct: 291 NYIKLMTKKQPILLLDDVLSELDYSRQKKLLQMVQR-DFQCIITTTE---IPDFLKHADM 346 Query: 365 --MRISNHQALCI 375 RI + + Sbjct: 347 TEFRIEGGKIFPL 359 >gi|169335586|ref|ZP_02862779.1| hypothetical protein ANASTE_02001 [Anaerofustis stercorihominis DSM 17244] gi|169258324|gb|EDS72290.1| hypothetical protein ANASTE_02001 [Anaerofustis stercorihominis DSM 17244] Length = 366 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 161/369 (43%), Gaps = 12/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + I+ FRN + F+ ++ IF G N GKTN LEA+S G R + ++ Sbjct: 1 MYIENIEITNFRNIEKINTSFNKKYNIFYGKNAQGKTNFLEALSLTLNGMSHREKNTSNF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G FS + E D IK +D R +IN I+ EL + + Sbjct: 61 IKNGED--FSLISAKVIKEDDIDTFIKCVIKDK---RKYEINSSPIKSRTELLREYNLVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSS 181 P +I G +RR+FL+ + I P + + + + ++ RN +L + SS Sbjct: 116 FTPEDLKIIKGYPADRRKFLNESISHIFPSYHSALRKYNKALKQRNAILRDYSKRNIASS 175 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + + +G I R+ ++ + + E ++ + + + Sbjct: 176 LLEVYDETLYTIGSDIIKIRINVLKKIEKITNELNKEVSKDEEVRFFYSSNVLENAKDLK 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 +K Y K L + R D M T IG H D+ + D T S G+Q+ + + + L Sbjct: 236 DIKSLYKKALKNSRNDDLMKGSTTIGVHHDDINIFLNDLD-TKKFASQGQQRSISLCMKL 294 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 + +L+ + PI+LLD++ + LD+ ++ + ++ D +Q F+T + S + +++ Sbjct: 295 SLIKLLHDKFDDYPIVLLDDVMSDLDKFRQKQILNLIKD--TQSFITCVNYSFLEDIDD- 351 Query: 362 AKFMRISNH 370 K +I Sbjct: 352 YKIYKIEKG 360 >gi|148271182|ref|YP_001220743.1| recombination protein F [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166220703|sp|A5CLT6|RECF_CLAM3 RecName: Full=DNA replication and repair protein recF gi|147829112|emb|CAN00009.1| DNA replication and repair protein RecF [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 404 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 161/397 (40%), Gaps = 38/397 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FRNY + T+FVG NG GKTN++EA+ FLS R ++ + Sbjct: 1 MIVRHLSLGDFRNYTRADVALLPGATLFVGSNGQGKTNLVEALGFLSTLGSHRVSTDQAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123 R G+ S A + + A +++E + +RS Q+N + EL ++ Sbjct: 61 IRQGAES-----AVIRALLQHAGRELRVEVQINRSAANRAQVNSTPTK-PRELPRYFSSV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178 P + G RRR LD+++ PR + D++R ++ RN LL Sbjct: 115 LFAPEDLALVRGDPSGRRRLLDQLLVLRTPRLAGVLSDYDRALKQRNTLLKSARARGMKA 174 Query: 179 -DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV----QKENFPHIKLSLTGFLD 233 + ++ +G +I AR ++ AL + ++ P + L+ D Sbjct: 175 DQLGTLDIWDERLVAIGSQIIAARGALVEALQPELARAYLAVAGSDHGPSARPELSILAD 234 Query: 234 GKFDQSFC---------------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 + + + + R + TL+GPHR D++ Sbjct: 235 DPGEDDIADETGARDGGRFTRSDDVVPVFTAAIARMRPRELERGLTLVGPHRDDVLFRLN 294 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRI 337 + S GE + + LA A L+ + P+L+LD++ A LD+ +R L Sbjct: 295 GLPAK-GYASHGESWSFALALKLASAELLRRDSQTGDPVLILDDVFAELDQARRGRLAEA 353 Query: 338 VTDIGSQIFMTGTD-KSVFDSLNETAKFMRISNHQAL 373 VT Q+ +T + V L A + I + + Sbjct: 354 VTGFE-QVLITAAVFEDVPAHLAANA--VHIRAGEIV 387 >gi|238650345|ref|YP_002916197.1| recombination protein F [Rickettsia peacockii str. Rustic] gi|259563671|sp|C4K0P8|RECF_RICPU RecName: Full=DNA replication and repair protein recF gi|238624443|gb|ACR47149.1| recombination protein F [Rickettsia peacockii str. Rustic] Length = 360 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 119/361 (32%), Positives = 189/361 (52%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A A+V + Sbjct: 6 LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCK 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S A ++ GLA+ + + + +R R + N+ I +EL+K + WL Sbjct: 66 T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W I Sbjct: 122 PHMEGIFTSGSNDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKENIVSF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T APILLLDE+ HLD+ +R L +T + Q+++T T+ ++ A+ ++ Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFATKAQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|257067226|ref|YP_003153481.1| DNA replication and repair protein RecF [Brachybacterium faecium DSM 4810] gi|256558044|gb|ACU83891.1| DNA replication and repair protein RecF [Brachybacterium faecium DSM 4810] Length = 414 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 94/416 (22%), Positives = 166/416 (39%), Gaps = 52/416 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++++FR+Y+ L L T+ VG NG GKTN++EA+ +L+ R A + Sbjct: 1 MQLTSLDLTDFRSYSRLTLPVRPGITVLVGQNGQGKTNVVEAVWYLATLSSHRVPHDAAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + V + + LE +S R ++ + + +L +R Sbjct: 61 VHRGESTAIVRASFVRAG---RPLQVDLEITPGKSNRA-RLQGQNVPRLRDLLGEVRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + RRRFLD ++F I PR D++R+++ R LL + Sbjct: 117 FAPEDLGLIKADPEGRRRFLDELLFEIAPRFASVKADYDRVLKQRGNLLKQMRSMRRGSS 176 Query: 179 ------------DSSWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIK 225 SS + Q+A G ++ AR+ ++N LS + Y++ + Sbjct: 177 GRSVGGLDPAETASSTLEVWDQQLARYGAELLRARLHLVNRLSPHLGYSYLRVSTDEGAE 236 Query: 226 LSLTGFLDGKFD------------------------QSFCALKEEYAKKLFDGRKMDSMS 261 +L D + D + + + + L G + Sbjct: 237 QALDLPPDQRGDVDSPAEIRYRSAVLDQLGAPAGSLPATREIHDGMLEMLAAGHDEEIDR 296 Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF----APIL 317 TL GPHR D+ + D + S GE + + + LA L+ G PIL Sbjct: 297 GATLTGPHRDDMEIRLHDFPAK-GYASHGESWSLALALRLASYDLLRLEEGDLGDGEPIL 355 Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 +LD++ + LD +R L RIVT + T D + DSL + ++ A+ Sbjct: 356 ILDDVFSELDTRRRERLGRIVTTASQVLITTANDGDIPDSLEGEIHVVDVTLGAAV 411 >gi|254483301|ref|ZP_05096532.1| RecF/RecN/SMC N terminal domain, putative [marine gamma proteobacterium HTCC2148] gi|214036396|gb|EEB77072.1| RecF/RecN/SMC N terminal domain, putative [marine gamma proteobacterium HTCC2148] Length = 373 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 168/380 (44%), Gaps = 20/380 (5%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M++ + L I+ RN +RL + +F G NG GKT++LEAI L R FR + Sbjct: 1 MSSDSSLSRLQINHVRNLLGVRLEGIQRVNVFFGHNGSGKTSVLEAIHLLGMARSFRGSI 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + G + F +E ++ ++ V+ ++I +R V EL ++L Sbjct: 61 -KSLVTHGQD-HCTVFGALE----PRSTTLGVQRGVTGEVK-IKIAGSPVRTVAELVEYL 113 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + + + +G RR++LD VF ++ R + F+R ++ RN+LL + Sbjct: 114 PVQVINADSFNLLTGSPGARRQYLDWGVFHVEHRFFDQWQRFQRGIKQRNKLLRRVKMPT 173 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + ++A+ G ++ R N L+ +E + + SLTG L+ ++ + + Sbjct: 174 EELAVWTRELAQSGEVLSGYRESYFNRLTPRFIEIMA-----QLAPSLTG-LELRYRKGW 227 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E Y + L + D T +GP R D+ V + + S G+QK+V+ G+ Sbjct: 228 DKQLE-YQQALENSTMTDIEQGYTHVGPQRGDVRV-LTEGHVAADTLSRGQQKLVVCGLK 285 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-- 358 LA +L++ L+D++ + LD + + ++ + +Q+F+T ++ ++ Sbjct: 286 LAQGQLMAEMGRGNCTYLVDDLPSELDLQHSSLVCGLLAGMNAQVFITCVHQNDIQAVWP 345 Query: 359 ---NETAKFMRISNHQALCI 375 + + + + Sbjct: 346 EEKQQELAMFHVEHGSVTPL 365 >gi|152963976|ref|YP_001359760.1| DNA replication and repair protein RecF [Kineococcus radiotolerans SRS30216] gi|189039627|sp|A6W3V7|RECF_KINRD RecName: Full=DNA replication and repair protein recF gi|151358493|gb|ABS01496.1| DNA replication and repair protein RecF [Kineococcus radiotolerans SRS30216] Length = 391 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 167/394 (42%), Gaps = 31/394 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ ++R+Y +L L T FVG NG GKTN++EAI +++ R + A + Sbjct: 1 MHVAHLSLVDYRSYPTLELDLRPGTTTFVGLNGQGKTNLVEAIGYVATLGSHRVSGDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ R + G ++LE ++ R ++N +R ++ LR Sbjct: 61 VRQGAE---RAVVRAQLERGGRRALVELEITPGKANRA-RLNGNPVRRTRDVLGVLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177 P + G ERRR+LD ++ PR D++R++R R LL G Sbjct: 117 FAPEDLALVKGDPGERRRYLDELLVTRWPRIAGVRADYDRILRQRTALLKSAGSAMRSGR 176 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD---- 233 D+ + +A G ++ AR+ ++ L S + + L L Sbjct: 177 ADTHTLDVWDEHLATTGAELLSARLALLADLRSPTDSAYRAVSGGQGDLELGYRSSLPLL 236 Query: 234 --------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 G + AL+E + + RK + L+GPHR DL++ Sbjct: 237 AEGVATTPGGEAPTRDALREALLASMLEQRKSELDRGVCLVGPHRDDLVLTLGGMPAK-G 295 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFA----PILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE V +G+ LA RL+ P+L+LD++ A LD +R L +V D Sbjct: 296 YASHGESWSVALGLRLASYRLLLADDEVDDPGGPVLVLDDVFAELDAGRRERLSEVVADA 355 Query: 342 GSQIFMT-GTDKSVFDSL-NETAKFMRISNHQAL 373 Q+ +T + V +L E + +++ A+ Sbjct: 356 E-QVLVTAAVPEDVPAALRGEHTDRVHVTSGAAV 388 >gi|149280279|ref|ZP_01886401.1| DNA replication and repair protein RecF, ABC family ATPase [Pedobacter sp. BAL39] gi|149228968|gb|EDM34365.1| DNA replication and repair protein RecF, ABC family ATPase [Pedobacter sp. BAL39] Length = 367 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 151/379 (39%), Gaps = 26/379 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + F+NY+ + F FVG+NG GKTN+L+AI +L +G+ + Sbjct: 1 MWLKNITLLNFKNYSDANISFSKTVNAFVGNNGAGKTNLLDAIHYLCLCKGYFNPIDSQQ 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + F + E I+ ++ + + N + + Sbjct: 61 IKT-AEDLFLIQGDFDRKEKNEKITCGVKRNQKKQFKR---NKKEYDKLASHIGLFPLVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 + P + S ERR+F+D ++ D + +I + R ++ RN LL + +D Sbjct: 117 ISPYDTNLIMEGSEERRKFMDNVISQTDGSYLDELIFYNRHLQNRNALLKQMSITRSYDP 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQ 238 S Q+ G KI R + + L +Y + E+ + L L Sbjct: 177 SLLEIYNDQLVASGNKIYAKRQQFMTEFIPLFDQYYRFLTEDKEEVNLQYQSQLADV--- 233 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + L + D + RT G H+ +L+ + GS G+QK L+ Sbjct: 234 -------SFEQLLLQSIEKDKVLERTTTGIHKDELVFTIRTTPLK-KFGSQGQQKSFLIA 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS---- 353 + LA + GF P+LLLD+I LDE + L +V+ D QIF+T T + Sbjct: 286 LKLAQYAYLQRYKGFKPLLLLDDIFDKLDEFRMQKLMEMVSHDDFGQIFITDTGRERVMA 345 Query: 354 VFDSLNETAKFMRISNHQA 372 VF + + N Sbjct: 346 VFQKIQVPITLFEVVNGSI 364 >gi|54021967|ref|YP_116209.1| recombination protein F [Nocardia farcinica IFM 10152] gi|81680365|sp|Q5Z3Z6|RECF_NOCFA RecName: Full=DNA replication and repair protein recF gi|54013475|dbj|BAD54845.1| putative recombination and repair protein [Nocardia farcinica IFM 10152] Length = 388 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 96/375 (25%), Positives = 162/375 (43%), Gaps = 25/375 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FR++ + L T+F+G NG GKTN+LEA+ +L+ R ++ A + Sbjct: 1 MFVRALSLRDFRSWEHVELELSTGRTVFLGANGNGKTNLLEAVGYLATLGSHRVSADAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V ++ I +E + R QIN +R E+ L+ Sbjct: 61 IRSGAQRARVGANVVNAG---RELRIDVELNQGSANRA-QINRSPVRRTREILGILQTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------EGYF 178 P + G ERRRFLD + A PR D++R++R R+ LL Sbjct: 117 FAPEDLALVRGDPGERRRFLDELCTARLPRLAGVRADYDRVLRQRSALLKTAGRHARSTA 176 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGK 235 D S + +A + R+ +++ L + E + E+ P + +L G+ Sbjct: 177 DLSTLDVWDGHLAGHAAVLVAQRLRLVHDLFPYLAEAYRSLAPESRPAAIGYRSAYLPGE 236 Query: 236 F--------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 F D AL+E ++L R+ + L+GPHR +L + D Sbjct: 237 FLDPARAPRDDDAAALEEIILRELAAARRKELERGVCLVGPHRDELELMLGDTPAK-GFA 295 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + LA L+ +T P+LLLD++ A LD +R A V Q+ + Sbjct: 296 SHGESWSFALALRLASFDLL-RSTSAEPVLLLDDVFAELDRRRRTA-LAAVAADAEQVLI 353 Query: 348 T-GTDKSVFDSLNET 361 T + V L+ T Sbjct: 354 TAAVPEDVPAELSAT 368 >gi|237736250|ref|ZP_04566731.1| DNA replication and repair protein recF [Fusobacterium mortiferum ATCC 9817] gi|229421598|gb|EEO36645.1| DNA replication and repair protein recF [Fusobacterium mortiferum ATCC 9817] Length = 365 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 70/371 (18%), Positives = 155/371 (41%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I +N FRN + F + +F G NG GKT++LEA+ F + G+ FR + ++ Sbjct: 1 MEILEINYINFRNLIDGSVKFFPKLNLFFGKNGQGKTSLLEAVYFNATGKSFRTSKANEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + G +++K + N+ + DE L + Sbjct: 61 MKYGVKR-TGVYIVYRDNIGEKTLTVKFNDN----KKEYYYNNKKV-PYDEFYGKLNVVT 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + + + + + ++ +L++ RN+ L E + Sbjct: 115 YIPEDIVLITGSPSIRRTFFDGEIAQTNSEYFQDLKNYNKLLKIRNKYLKEERTKDTEYL 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCA 242 E + + G K+ R+E + +S ++ +K +N + LS L S Sbjct: 175 VYEDEFIKYGAKVIEKRLEYVQKISIILNLNYRKLFDNKKELSLSYECHLGNIKKLSLKE 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ +K+ + +L GP + D + + S GE+K ++ + L+ Sbjct: 235 IEKLLREKIKKNFSQEKRYGFSLCGPQKDDFLFILNGHEAK-STASQGEKKSIIFSLKLS 293 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++ P+L++D+IS++ D +++ ++ + Q+ ++ T DS + Sbjct: 294 EIDMVIREKKENPVLIIDDISSYFDSNRKESILNYLEKRNIQVLVSSTGDLGIDSND--- 350 Query: 363 KFMRISNHQAL 373 + + + Sbjct: 351 --FYVEGGEIV 359 >gi|170780467|ref|YP_001708799.1| recombination protein F [Clavibacter michiganensis subsp. sepedonicus] gi|189039619|sp|B0RH73|RECF_CLAMS RecName: Full=DNA replication and repair protein recF gi|169155035|emb|CAQ00131.1| DNA replication protein [Clavibacter michiganensis subsp. sepedonicus] Length = 408 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 90/390 (23%), Positives = 161/390 (41%), Gaps = 36/390 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FRNY + T+FVG NG GKTN++EA+ FLS R ++ + Sbjct: 1 MIVRHLSLGDFRNYTRADVALLPGATLFVGSNGQGKTNLVEALGFLSTLGSHRVSTDQAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123 R G+ S A + + A +++E + +RS Q+N + EL ++ Sbjct: 61 VRQGAES-----AVIRALLQHAGRELRVEVQINRSAANRAQVNGTATKT-RELPRYFSSV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178 P + G RRR LD+++ PR + D++R ++ RN LL Sbjct: 115 LFAPEDLALVRGDPSGRRRLLDQLLVLRTPRLAGVLSDYDRALKQRNTLLKSARARGMKA 174 Query: 179 -DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV----QKENFPHIKLSLTGFLD 233 S + ++ +G +I AR ++ +L + ++ P + L+ D Sbjct: 175 DQLSTLDIWDERLVAIGSQIIAARGALVESLQPELARAYLAVAGSDHGPSARPELSILAD 234 Query: 234 GKFDQSF---------------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 + + + + R + TL+GPHR D++ Sbjct: 235 DPGEDDVADETGARDGGRFTRTEDVVPVFTAAIARMRPRELERGLTLVGPHRDDVLFRLN 294 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRI 337 + S GE + I LA A L+ + P+L+LD++ A LD+ +R L Sbjct: 295 GLPAK-GYASHGESWSFALAIKLASAELLRRDSQTGDPVLILDDVFAELDQARRGRLAEA 353 Query: 338 VTDIGSQIFMTGTD-KSVFDSLNETAKFMR 366 VT Q+ +T + V + L A +R Sbjct: 354 VTGFE-QVLITAAVFEDVPEHLAANAVHIR 382 >gi|296167141|ref|ZP_06849548.1| recombination protein F [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897463|gb|EFG77062.1| recombination protein F [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 385 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 158/382 (41%), Gaps = 23/382 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A L + T+FVG NG GKTN++EA+ F + R S + Sbjct: 1 MYVRHLGLRDFRSWAHADLELEPGRTVFVGSNGFGKTNLVEALWFSATLGSHRVGSDTPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + ++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGADRAVVSTIVVNEG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G ERRR+LD + P D+++++R R LL D Sbjct: 117 FAPEDLALVRGDPAERRRYLDDLATVRRPAVAGVRADYDKVLRQRTALLKSAAGMRHRAD 176 Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234 ++++AE G ++ AR++++N L+ + + Q ++ L Sbjct: 177 RGALDTLDVWDSRLAEHGAELMAARIDLVNQLTPEVEKAYQLLAPASRPASIAYRSSLGA 236 Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + E+ L + R + L+GPHR DL + D+ S Sbjct: 237 QLAADGGGHDREFLEAALLAALAERRDAELERGMCLVGPHRDDLELWLGDQPAK-GFASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT- 348 GE V + LA L+ G P+LLLD++ A LD +R AL V + Q+ +T Sbjct: 296 GESWSFAVALRLAAYELL-RADGSEPVLLLDDVFAELDAARRRALA-TVAEAAEQVLVTA 353 Query: 349 GTDKSVFDSLNETAKFMRISNH 370 + + ++ + + Sbjct: 354 AVVEDIPAGWAARQVYIDLRDG 375 >gi|86133307|ref|ZP_01051889.1| DNA replication and repair protein RecF [Polaribacter sp. MED152] gi|85820170|gb|EAQ41317.1| DNA replication and repair protein RecF [Polaribacter sp. MED152] Length = 359 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 158/372 (42%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ F+N AS F + FVG+NGVGKTN+L+AI +LS + + + Sbjct: 1 MYLQQLSLVNFKNIASQSFDFQEKINCFVGNNGVGKTNVLDAIYYLSFTKSYFNSVAVQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + SFF + I L+ + L+ N + I Sbjct: 61 IKHN-ESFFMIEGNYLLNDRKETIVCSLK---KGQKKILKRNGKTYDRFSDHIGQFPIVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + + S RR+F+D ++ + + + +I + +++ RN LL FD+ Sbjct: 117 ISPADRDLVTEGSDLRRKFIDGVISQQNKSYLKDLIGYNKVLTQRNALLKYFAANRTFDA 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S + Q+++ G KI R + + E + + ++L + D S Sbjct: 177 LNLSVYDEQLSDFGTKIYEVRRHFLEEFIPIFNEKYKVISGDKENVNL-NYKSQLHDFSM 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L L + D + + + G H+ DL + D I GS G+QK L+ + Sbjct: 236 PDL-------LQKSLEKDKILQYSTSGIHKDDLNFEIGDYPIK-KFGSQGQQKSYLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL- 358 LA I PILLLD+I LDE++ + +V D QIF+T T +++ Sbjct: 288 LAQFEFIKQQAKITPILLLDDIFDKLDENRVAQIIDLVNNDEFRQIFITDTHAERTENIL 347 Query: 359 ---NETAKFMRI 367 N+ + ++ Sbjct: 348 KEGNKQYQIFKL 359 >gi|300769989|ref|ZP_07079868.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33861] gi|300762465|gb|EFK59282.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33861] Length = 368 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 159/377 (42%), Gaps = 21/377 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ F+NY L F + F G+NG GKTN+L+AI +LS + + + Sbjct: 1 MWLKQLSVLNFKNYTESALEFLPEVNAFAGENGAGKTNLLDAIHYLSLCKSYFNPIDSQH 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G +F E IS L+ + + + + + + + Sbjct: 61 IKQGMD-WFMVQGSFENDTRTDVISCSLKKNQKKQFKKNKKD---YPRLADHIGQFPLVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 + P+ I + S ERR+F+D ++ D + ++I + +++ RN +L + G D Sbjct: 117 ISPNDSMIITDGSEERRKFMDNVISQTDHHYLDKLITYNKVILQRNIMLKQARESGQLDL 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E+G +I R + + ++ ++SL Sbjct: 177 GLLEVLNLQLVEVGAQIFEKRQQFMKDFLPEFEKHYHFLTESAEQVSLVY--------ES 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + ++ L + D RT G H+ DL+ + GS G+QK L+ + Sbjct: 229 PLMTIDFQDLLDRNLERDRALERTSQGIHKDDLLFTIHEGMPLKKFGSQGQQKSFLIALK 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS----VF 355 LA + + GF P+LLLD+I LDE + L ++V+ D QIF+T TD +F Sbjct: 289 LAQYSFLQSRKGFKPLLLLDDIFDKLDERRTRKLMQMVSEDDFGQIFLTDTDSERVQRIF 348 Query: 356 DSLNETAKFMRISNHQA 372 + + + + I Sbjct: 349 EEIAQPIRIFDIKGGAI 365 >gi|94495802|ref|ZP_01302381.1| DNA replication and repair protein RecF [Sphingomonas sp. SKA58] gi|94424494|gb|EAT09516.1| DNA replication and repair protein RecF [Sphingomonas sp. SKA58] Length = 357 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 199/368 (54%), Gaps = 17/368 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +S+FRN+A ++ D + GDNG GKTNILEA+S L+PGRG R A+ + R Sbjct: 2 IGRLTLSDFRNHADALILPDHAFVLLTGDNGAGKTNILEAVSMLAPGRGLRGAALGAMAR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F A V+G+ + + R VR V + L HL I+WL Sbjct: 62 QEGAGGFGIAAEVDGVV--LGTGVAASAPERRQVRI----GGVGSSANALADHLAITWLT 115 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185 P+MDR+F RRRFLDR+ A+ P H ++ MR RNRLL + D +W S+ Sbjct: 116 PAMDRLFLDSPGGRRRFLDRLTLALHPGHAAHSARYDAAMRARNRLLGDLRTADPAWLSA 175 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +EAQM + G+ ++ AR +++ L+ ++ + + P + + +++ +E Sbjct: 176 LEAQMDDHGLVLSAARADLVARLNDILAR---QPDAPFARPMI------AIEEAEPQGEE 226 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 A +L R+ D+ + R+L GPHR DL V + K A STGEQK +L+ I LAHA Sbjct: 227 PLAMRLARQRRRDAAAGRSLSGPHRHDLAVTHVAKGQAAALCSTGEQKALLLSILLAHAA 286 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L+++ G P+LLLDE++AHLD +R ALF + + G QI+MTGT+ S+F L A + Sbjct: 287 LVADERGQPPVLLLDEVAAHLDPLRRAALFDRLAETGGQIWMTGTEPSLFSDLT-AATRL 345 Query: 366 RISNHQAL 373 ++ Sbjct: 346 TVTAGHVF 353 >gi|189345561|ref|YP_001942090.1| DNA replication and repair protein RecF [Chlorobium limicola DSM 245] gi|259563358|sp|B3EDN1|RECF_CHLL2 RecName: Full=DNA replication and repair protein recF gi|189339708|gb|ACD89111.1| DNA replication and repair protein RecF [Chlorobium limicola DSM 245] Length = 363 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 151/353 (42%), Gaps = 10/353 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI+ + + +FRN+ +L + G NG GKT++LE I + + +GF A ++ Sbjct: 1 MKIEQIQLVQFRNHKNLSYGPAEGINLLYGPNGSGKTSVLEGIHYCALTKGFVTAYDSEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F + + + + + L +N + + + Sbjct: 61 LAFGESFFLINGRFISDALKEDGVKVVYSRDNGKK---LTVNGQDLTSFSQHIGSIPCIT 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL---LTEGYFDSS 181 P+ + +G +ERRRFLD + D R+ + M+++ R++ RN L L E Sbjct: 118 FSPAEMSVINGSPVERRRFLDNAICQADCRYLQSMLNYRRVLLQRNALLLQLKERVQSIE 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-KLSL-TGFLDGKFDQS 239 + + Q++E I AR+ ++ + + + + +++ + + + + Sbjct: 178 MLNVLTEQLSEYAADIVFARLRFLDEILPGLKAILSSVSVKEEPRITYRSSLVPSVYALT 237 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L + ++ ++ + T GPHR D++ I + S G+Q+ L+ + Sbjct: 238 KEELINYFREQYAKKKQDEIARGLTAGGPHRDDIVFFLNQHEIK-KYASQGQQRSFLIAM 296 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +A S+ P+ L D++ + LD + LF ++ G Q+F+T T+K Sbjct: 297 KMALYGYFSDKLNEKPVCLFDDLFSELDRSRVEVLFALLASFG-QVFITATEK 348 >gi|269124281|ref|YP_003297651.1| DNA replication and repair protein RecF [Thermomonospora curvata DSM 43183] gi|268309239|gb|ACY95613.1| DNA replication and repair protein RecF [Thermomonospora curvata DSM 43183] Length = 379 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 90/384 (23%), Positives = 160/384 (41%), Gaps = 25/384 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+YA+ + + ++FVG NG GKTN++EAI +++ R A+ A + Sbjct: 1 MHVAHLSLQDFRSYATAEIALEPGVSVFVGPNGQGKTNLMEAIGYVAAHSSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+P V I+LE RS R ++N + E+ LR Sbjct: 61 IRQGAPRAIVRAGVVRDDRKAL---IELEINPGRSNRA-RLNRAPVPRPREILGMLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G ERRRFLD ++ A PR D++R++R RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARAPRLAGVRADYDRVLRQRNALLKSAAAHRRPPG 176 Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDG 234 + ++ +A +G ++ AR++++ LS L + L+ L Sbjct: 177 PEMLATLEVWDSHLARVGAELLAARLKLVADLSPLAAKAYAALAPGGGIASLAYRSSLGE 236 Query: 235 KFDQSFCALKEE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + + + + + L + R+ + +L+GPHR +L++ S Sbjct: 237 RLPEDRMPVPRQTLAPLIEEALREVRRQELERGVSLVGPHRDELVLQLGGMP-ARGFASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT- 348 GE + + A + G P+L+LD++ A LD +R L +V Q+ +T Sbjct: 296 GESWSLALA-LRLAAFELLRADGDDPVLILDDVFAELDTGRRRRLAELVAPAE-QVLITA 353 Query: 349 GTDKSVFDSLNETAKFMRISNHQA 372 V L + + N Sbjct: 354 AVPADVPAELRGAS--FTVENGAV 375 >gi|291515283|emb|CBK64493.1| recF protein [Alistipes shahii WAL 8301] Length = 415 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 83/373 (22%), Positives = 156/373 (41%), Gaps = 18/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + F+N + L VGDNG GKTN+++A+ +LS + + Sbjct: 1 MHLKKIALLNFKNISQEELALCPGINCLVGDNGAGKTNVVDAVYYLSMCKSSLPMTDGQS 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF G + + +R + + L+ N + + + Sbjct: 61 IRHGAD-FFLVEGTYASDAGKRETIVCSFSR--KGGKVLKRNGKEYERLSDHVGLIPAVI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P+ + S + ERRR+L+ + +D + ++ + ++ RNRLL D + Sbjct: 118 VSPADSALISDAADERRRYLNAFISQLDRAYLGSVMRYNAVLAERNRLLKT-RPDETMLQ 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+ E G I+ R E L + Y + ++ L + Sbjct: 177 IYDMQLCEHGKAIHARRQEFAERLQPVTAAYYSILSGDREQVELHYKSELNDRP------ 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + + L D R+ D ++ T G HR DL++ + +GS G+QK L+ + LA Sbjct: 231 --FEEILLDARQKDIVNEFTTAGIHRDDLVLKIGGYPLR-KYGSQGQQKSFLIALKLAQY 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSLNETA- 362 +++ T G PILLLD++ LD + L R+V+D QI +T + + + + A Sbjct: 288 AVVAQTKGERPILLLDDLFDKLDAGRVEQLIRLVSDNTFGQILITDCNPTRLKRILDKAG 347 Query: 363 ---KFMRISNHQA 372 ++ Sbjct: 348 GDYTLFSVAEGTV 360 >gi|312112798|ref|YP_004010394.1| DNA replication and repair protein RecF [Rhodomicrobium vannielii ATCC 17100] gi|311217927|gb|ADP69295.1| DNA replication and repair protein RecF [Rhodomicrobium vannielii ATCC 17100] Length = 400 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 147/388 (37%), Positives = 212/388 (54%), Gaps = 18/388 (4%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 T+RI I L +++FRNY ++ LV + G NG GKTN LEA+S L+ GRG R + Sbjct: 4 TDRIAIAKLTLTDFRNYRAVTLVTGLGPVVLAGANGAGKTNCLEAVSLLTAGRGLRSLPF 63 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD-----RSVRCLQINDVVIRVVDEL 116 ++ R G ++ A + I ++ D R+ R ++I+ + + L Sbjct: 64 PELARSGGSGGWAVAAELGVAGEDMHIGTGIQLPPDGMLTPRAARTVKIDHALAKGSGAL 123 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 + +R+ WL PSMD +F+G + ERRRFLDR+V ++DP + FER MR RN+ L E Sbjct: 124 VR-IRMLWLTPSMDGLFTGPAAERRRFLDRLVLSLDPGYGAAASAFERAMRQRNKALEE- 181 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLD 233 + ++IEAQMA V + +AR I ALS I ++ FP L+L G L+ Sbjct: 182 FDSPPMLTAIEAQMAAAAVAMAVARARAIAALSGEIEAERNRDPDSLFPWAALTLNGTLE 241 Query: 234 GK-----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + D L++ YA+ L GR D + RTL GPHRSDL V + KA+ S Sbjct: 242 EQAAALSEDTMRDELRDGYARALAQGRDRDRAAGRTLSGPHRSDLDVAHGPKAMPARMCS 301 Query: 289 TGEQKVVLVGIFLAHARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 TGEQK +LVG+ LA ARLI G AP++LLDEI+AHLD +R ALF + + +Q++M Sbjct: 302 TGEQKALLVGLVLAQARLIKRAADGIAPLILLDEIAAHLDIGRREALFSSIVALNAQVWM 361 Query: 348 TGTDKSVFDSLNET--AKFMRISNHQAL 373 TGTD + F L + +SN + Sbjct: 362 TGTDLATFTPLRNATETQLFVVSNGTIM 389 >gi|97180901|sp|Q4UNG8|RECF_RICFE RecName: Full=DNA replication and repair protein recF Length = 364 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 119/361 (32%), Positives = 185/361 (51%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A AD+ + Sbjct: 6 LHSLTLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICK 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 A ++ GLA+ + + + +R R + N+ I +EL+K + WL Sbjct: 66 ASEDQCL-VKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ S +RR+FLDR+V+ D +H + +E M RN++L E D +W I Sbjct: 122 PQMEGIFTSGSSDRRKFLDRIVYNFDSKHAELVSKYEYYMYERNKILAEDIRDDNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA++ I R++ + + I E + FP LS+ G ++ K + Sbjct: 182 EEKMADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDGKENIVNF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T APILLLDE+ HLD+ +R L T + Q+++T TD ++ A+ ++ Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRGYLIEFFTGLNMQLWVTATDLEGIENFANKAQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|229586258|ref|YP_002844759.1| recombination protein F [Rickettsia africae ESF-5] gi|259563670|sp|C3PM56|RECF_RICAE RecName: Full=DNA replication and repair protein recF gi|228021308|gb|ACP53016.1| DNA replication and repair protein RecF [Rickettsia africae ESF-5] Length = 360 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 118/361 (32%), Positives = 188/361 (52%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A A+V + Sbjct: 6 LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCK 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S A ++ GLA+ + + + +R R + N+ I +EL+K + WL Sbjct: 66 T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W I Sbjct: 122 PHMEGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T APILLLDE+ HLD+ +R L + + Q+++T T+ ++ A+ ++ Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFLIGLNMQLWVTTTNLEGIENFATKAQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|166362989|ref|YP_001655262.1| recombination protein F [Microcystis aeruginosa NIES-843] gi|189039629|sp|B0JM53|RECF_MICAN RecName: Full=DNA replication and repair protein recF gi|166085362|dbj|BAG00070.1| DNA replication and repair protein [Microcystis aeruginosa NIES-843] Length = 375 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 88/380 (23%), Positives = 177/380 (46%), Gaps = 17/380 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNYA L F+++ TI +G+N GK+N+LEAI L+ + R + D+ Sbjct: 1 MYLEHLHLHSFRNYAEQVLKFESKKTILLGNNAQGKSNLLEAIELLATLKSHRVSKDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S S FARV + G +++S+ L + R + + +R + + Sbjct: 61 V-LESDSEARIFARVNRLYGASELSLILRSSGR---RTVIRDRQPLRRHLDFLGVINAVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 + G RR +LD ++ ++P + + + +++R RN LL E Sbjct: 117 FSSLDLDLVRGGPEARRDWLDTLLIQLEPLYVHILQQYNQVLRQRNALLKEIRKQELEGK 176 Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 Y D S + Q+AE G ++ R ++ L L ++ + + L L + Sbjct: 177 VYGDLSQLKLWDLQLAETGSRVTRRRARVLQRLIPLAQKWHESISGKTELLELQYIPNVP 236 Query: 236 F-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + ++ + K+ R + +++GPHR ++ ++ ++GS G+Q+ Sbjct: 237 WVEDDVNGVQRAFLDKIETRRLAEKQLGTSVVGPHRDEVDF-LINQNPAKSYGSQGQQRT 295 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 +++ + LA +L+ G P+LLLD++ A LD +++N L + D Q +T T S Sbjct: 296 LVLALKLAELQLLEQIIGEPPLLLLDDVLAELDIERQNQLLDAIED-RFQTLITTTHLSS 354 Query: 355 FDS-LNETAKFMRISNHQAL 373 F+S ++++ + Sbjct: 355 FESRWLQSSQVFSVKKGHIF 374 >gi|312137518|ref|YP_004004854.1| DNA replication and repair protein recf [Rhodococcus equi 103S] gi|311886857|emb|CBH46165.1| DNA replication and repair protein RecF [Rhodococcus equi 103S] Length = 408 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 165/394 (41%), Gaps = 37/394 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++ +FR++ ++ + + T+FVG NG GKTN+LEA+ +LS R +S A + Sbjct: 1 MFVRKFSLRDFRSWDAVTVDLEPGCTVFVGRNGHGKTNLLEALGYLSTLSSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+P +A ++ I +E D R+ R +IN R E+ L+ Sbjct: 61 IRAGAP---QAYAGALIANHGRELGIDIEINDGRANRA-RINQSPARRPREIVGILQTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 P + G +RRRFLD ++ A PR D+++++R R+ LL Sbjct: 117 FAPEDLSLVRGDPGDRRRFLDELLTARRPRMAGVRADYDKVLRQRSALLKTAGGALRRGA 176 Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLT 229 +G + + +A G ++ +R+ +++ L+ ++ + + Sbjct: 177 RSSDGASALATLDIWDGHLAAHGAQLLASRLRLVHDLAPHLVASYRSLAPESRPASVRYK 236 Query: 230 GFLDGKFDQSFCA------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 L L+ + +L + R+ + L+GPHR DL + Sbjct: 237 SSLGTSLPPELLDPTREPDPDDVELLEVSFLNELSEMRQREIERGVCLVGPHRDDLELIL 296 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 D+ S GE + + L L+ + G P+L+LD++ A LD +R A Sbjct: 297 GDQPAK-GFASHGESWSFALSMRLGAFFLLRD-DGSDPVLMLDDVFAELDRKRRAA-LAG 353 Query: 338 VTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNH 370 V Q+ +T + V L +A + H Sbjct: 354 VAAQAEQVLITAAVAEDVPAEL--SATRFGVEAH 385 >gi|91204849|ref|YP_537204.1| recombination protein F [Rickettsia bellii RML369-C] gi|122426139|sp|Q1RKJ9|RECF_RICBR RecName: Full=DNA replication and repair protein recF gi|91068393|gb|ABE04115.1| DNA replication and repair protein RecF [Rickettsia bellii RML369-C] Length = 360 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 121/361 (33%), Positives = 191/361 (52%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + +RN+ +L L D +G+NG GKTNILEAIS PGRG R A AD+ R Sbjct: 6 LHSLIVENYRNFKNLELKTDNIPITIIGENGSGKTNILEAISLFYPGRGLRSARLADICR 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S A ++ GLA+ S +++ +R R + N+ I +EL+K + WL Sbjct: 66 -ESEDHCSVRALLQSKLGLAEFSTQIKRISNR--RTTEYNNSKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ + +RR+F DR+V+ DP+H + +E M+ RN++L E +D++W +I Sbjct: 122 PQMEGIFTSGTSDRRKFFDRIVYNFDPKHAELVSKYEHYMQERNKILAEDMWDNNWLKTI 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA+ + I R++ + + I + + FP +LS+ G ++ K + Sbjct: 182 EEKMADTSIYIANNRLKTLEFMQQAIDDL--ENEFPKAELSIDGMVEQKILNGEEDVVGF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 A +L R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 IAAELHKTRDKDKLLGRTSFGVHKSDFLVKHKHKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T APILLLDE+ HLD+ +RN L I Q+++T TD + ++ ++ Sbjct: 300 AIKLTKTAPILLLDEVFVHLDDRRRNYLTEFFISINLQLWVTATDLKGIEEFGNKSQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|332521002|ref|ZP_08397462.1| DNA replication and repair protein RecF [Lacinutrix algicola 5H-3-7-4] gi|332043532|gb|EGI79728.1| DNA replication and repair protein RecF [Lacinutrix algicola 5H-3-7-4] Length = 359 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 81/372 (21%), Positives = 153/372 (41%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N+ S F+ VG+NGVGKTN+L+AI LS G+ + + Sbjct: 1 MILKSLSLLNYKNFDSKTFEFNDTINCLVGNNGVGKTNVLDAIYHLSFGKSYFNPIASQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FF I + L+ + ++ N E L + Sbjct: 61 IKHDED-FFVVNGEYNKENKSEKIVVSLKRG---QKKVIKRNAKAYEKFSEHIGFLPLVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + + S+ RR+F+D ++ D + +I + + + RN LL F+ Sbjct: 117 ISPADRDLITEGSVTRRKFIDSVISQSDKFYLEHLIKYNKALAQRNSLLKYFALNNTFNQ 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 AQ+ G ++ R + + Q + + + L D Sbjct: 177 DTLDIYNAQLHTFGTEVFNKRNSFLETFIPIFKSRYQAISNGNEIVDLVYKSD------- 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E L D + T +G H+ DL+ + + I GS G+QK L+ + Sbjct: 230 -LFDNELESLLKKVINKDKAVQYTSVGVHKDDLLFNIDEHPIK-KFGSQGQQKSFLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVF 355 LA I +G PILLLD+I LDE++ + ++V D Q+F++ T ++ Sbjct: 288 LAQFDFIKQQSGVNPILLLDDIFDKLDEERVTQIIKLVDDENFGQLFISDTHAERTENAV 347 Query: 356 DSLNETAKFMRI 367 ++++ + ++ Sbjct: 348 KQVHQSYEIFKL 359 >gi|220933196|ref|YP_002512095.1| DNA replication and repair protein RecF [Thioalkalivibrio sp. HL-EbGR7] gi|254790497|sp|B8GSS3|RECF_THISH RecName: Full=DNA replication and repair protein recF gi|219994506|gb|ACL71108.1| DNA replication and repair protein RecF [Thioalkalivibrio sp. HL-EbGR7] Length = 360 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 154/367 (41%), Gaps = 14/367 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + R +R+ + + G NG GKT++LEAI LS G FR + + Sbjct: 1 MILNRLEVRGLRILRHVRMDPVSGLNLVHGVNGAGKTSLLEAIHLLSTGHSFRTRQLSPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + AR++ G + + R R +I +R + +L + L + Sbjct: 61 LAPDCDA-VEVVARIQSTGGGEPWPVGI--RKTRDSTTARIRGENVRSLADLARLLPLQV 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + SG RR FLD F DP + + L+ RN L + + S Sbjct: 118 MHPESHLLVSGGPGYRRAFLDWGCFHTDPAYHDHWRRYRHLLCQRNAALRDRSP-ARLLS 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + E G +++AR + L + Q+ L+L ++S Sbjct: 177 AWDTALGEAGSALDLARATHLQTLLPYLDSLKQELP-ETSGLALEYRRGWNPEESLS--- 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L + D + T +GPHR++L+ + + S G+QK V++ + +A + Sbjct: 233 ----ESLAHSVQRDRSAGFTQVGPHRAELLCRLDGRPVAQV-ASRGQQKSVVLMLKMAQS 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + T GF P++L+D++ A LD R L + +GSQ+F+T + ++ + Sbjct: 288 LWLMETLGFPPVVLVDDLPAELDARHRGWLMNCLQGLGSQVFVTAIESDQVPLSGWDSWQ 347 Query: 364 FMRISNH 370 + + Sbjct: 348 MFHVEHG 354 >gi|308175817|ref|YP_003915223.1| DNA replication and repair protein RecF [Arthrobacter arilaitensis Re117] gi|307743280|emb|CBT74252.1| DNA replication and repair protein RecF [Arthrobacter arilaitensis Re117] Length = 387 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 159/393 (40%), Gaps = 32/393 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+++ FR+YA + + +G NGVGKTNI+E+I +L+ R ++ A + Sbjct: 1 MYISQLSLTGFRSYAQADVHLAPGINVLIGPNGVGKTNIVESIGYLANLSSHRVSNDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S G ++++E + R +IN E+ +R Sbjct: 61 LNFESDRALIRGTV---HRGPQTTTLEVEITSGKINRA-RINRANPVRAREILGMVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G RR+FLD ++ A+ P D++R+++ RN LL Sbjct: 117 FAPEDLALIKGDPSNRRKFLDELLVALRPIESGTKNDYDRIVKQRNALLKSIRGKSKLST 176 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGK 235 + + + Q+ G ++ R++++ + + + + L+G+ Sbjct: 177 SQENTLKAWDLQLTMTGARLIRGRLDVLALIRPYMQAAYADLADGAKDARAVYRSSLEGE 236 Query: 236 FDQ-----------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 D+ ++E + R + +L GPHR DL + A Sbjct: 237 LDENSLPAEDLESLEQEEIQELLLTAIEANRSREVDRGISLFGPHRDDLTLILGP-APAK 295 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + LA R+ + G PIL+LD++ A LD +R+ L IV Sbjct: 296 GYASHGETWSFALALRLAAYRVFGDDDPRPGSGPILILDDVFAELDTTRRDRLAHIVAGA 355 Query: 342 GSQIFMT-GTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T + V ++L F ++S Q + Sbjct: 356 E-QVLVTAAVVEDVPEAL--KGHFFQVSPGQVV 385 >gi|313112549|ref|ZP_07798213.1| putative recombination protein F [Faecalibacterium cf. prausnitzii KLE1255] gi|310625131|gb|EFQ08422.1| putative recombination protein F [Faecalibacterium cf. prausnitzii KLE1255] Length = 373 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 162/382 (42%), Gaps = 30/382 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L ++ +RN A+ +L + T+ G+NG GKTN+LEAI L+ G+ FR A++ Sbjct: 1 MRLLSLEVANYRNIAAAQLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGL-------ADISIKLETRD-DRSVRCLQINDVVIRVVDEL 116 R G +F A + A++ I + T D R R +N + L Sbjct: 61 VRRG-ETFAVLEAVTQRTRQEDQEPDEPANVRITVGTPDAQRPGRYASVNGSPPKRAAGL 119 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 P + G RRRFLD + + P + + R ++ +N LL Sbjct: 120 AGSFPAVVFDPGHLSLVKGAPEGRRRFLDAALCQLYPGYLATYRRYVRALQQKNALLRHS 179 Query: 177 YFDS--------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 + + + ++A G I R E + L+ L + + ++++ Sbjct: 180 AGGTERPWAEKCALLEVLNVELAAQGEAIQKRRREYLALLTPLACANYAELSHGAERMAV 239 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 +F+ + L + + + ++L G HR D+ + D+ + S Sbjct: 240 RYA--AQFEPGG------LSALLKQRQNEELRAGQSLCGIHREDVELLLDDQPAKV-FAS 290 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+Q+ V++ + +A A + TG P+LLLD++ + LDE ++ L + + Q F+T Sbjct: 291 QGQQRSVVLSLKMAEAAAAARITGEHPVLLLDDVLSELDEGRKQYLLTRMKEK--QTFVT 348 Query: 349 GTDKSVFDSLNETAKFMRISNH 370 D + F L + R++ Sbjct: 349 SCDDTAF--LKTDGEVYRMNGG 368 >gi|92112139|ref|YP_572067.1| recombination protein F [Chromohalobacter salexigens DSM 3043] gi|122421034|sp|Q1R1P0|RECF_CHRSD RecName: Full=DNA replication and repair protein recF gi|91795229|gb|ABE57368.1| DNA replication and repair protein RecF [Chromohalobacter salexigens DSM 3043] Length = 361 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 145/372 (38%), Gaps = 16/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ LN RN A+L + + G NG GKT++LE + L R FR Sbjct: 1 MPLERLNFLGLRNLAALDMRPGPGINLITGANGSGKTSLLEGMHVLGMARSFRTQKLKHA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + RV G +++ + D S ++++ V L + L + Sbjct: 61 IAHDADA-VTLHGRVAGD---PPVALGVRRARDASELEIRLDGERGVRVARLAEALPLQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P R+ G RR FLD VF + R ++ RN LL D+ Sbjct: 117 INPDAFRLLEGSPAARREFLDWGVFHVKHEFFEAWRRVRRALKHRNALLRHDRIDARSMR 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 E ++A ++ R E + + + + E P LSL + + Sbjct: 177 VWEQELAHWSELLDALRSEYMAQFAKAFEDTLH-ELLPLSGLSLRYYRGWDKQRG----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L GR D T GP R+DL + K + S G+QK+V+ + LA Sbjct: 231 --LLEVLEGGRDTDRQMGFTQQGPQRADLRLRI-GKRAAVEELSRGQQKLVVSALKLAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE---T 361 RL+ TG + L+D++ A LD R + + Q+F+T ++ + + Sbjct: 288 RLLDELTGRTCVYLIDDLPAELDVTHRRIFCHWLERLRCQVFITSVEREALANAWQSETD 347 Query: 362 AKFMRISNHQAL 373 + + + L Sbjct: 348 VAMFHVEHGRLL 359 >gi|323143412|ref|ZP_08078097.1| putative DNA replication and repair protein RecF [Succinatimonas hippei YIT 12066] gi|322416817|gb|EFY07466.1| putative DNA replication and repair protein RecF [Succinatimonas hippei YIT 12066] Length = 359 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 155/350 (44%), Gaps = 12/350 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L IS+FRN L + G NG GK+++LEA+S+L+ GR FR +Y + Sbjct: 1 MFLSRLVISDFRNLEMLDFKPAPGFNVIYGPNGSGKSSVLEAVSYLALGRSFRGYNYQYL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G SF S FA V +I + + ++IN ++ + +L + + Sbjct: 61 IKNGRKSF-SVFASVNENHAALTDNIGI-AKGRGEDLQIKINGSKVQRLIDLVDKICVQI 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + + RR F+D V+ +P+ + +++R+++ RN LL D S Sbjct: 119 IHPQGIELVTQGPELRRNFIDWGVYYSEPKFKDLWFNYKRVIKQRNILLKSKASDFE-IS 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ L KI+ R + L+ + + ++ P L D Sbjct: 178 VWDDLLSSLSEKIDEFRCSYLEKLN-VFLSAQCEQFLPKFSLKFELHSGWNKDF------ 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L + D + T G HR+DL + D A S G+ K+++ + LA Sbjct: 231 -KLRDLLAQNLEKDRVLGYTFYGCHRADLKIK-SDSVSAGATLSRGQLKLLVCAMRLAQG 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 L+ + TG + I L+D++++ LD + + L + Q+F+T + + Sbjct: 289 LLLKHETGRSCIYLIDDLNSELDSNSQKILLENLKQCSCQVFITNISREM 338 >gi|221135257|ref|ZP_03561560.1| Recombinational DNA repair ATPase [Glaciecola sp. HTCC2999] Length = 366 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 162/374 (43%), Gaps = 18/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + IS+FRN S + A + +G NG GK++ LE++ +L GR FR + V Sbjct: 1 MKLDKVQISQFRNIESATIYPSAHLNVVIGQNGSGKSSFLESLHYLGFGRSFRTNKHRHV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G S FS FA + + I L R+++ IN + + +L + + Sbjct: 61 IQSG-LSQFSVFAECSDINN-DNHKIGL-MRNNKDEFLCSINGKRSQRIADLVSQIPVQI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180 P + G RR+FLD +F ++ +++ ++++ RN LL + Sbjct: 118 FTPQSTELLLGSPSNRRKFLDWGLFHVEQSFFNLSLNYSKILKQRNALLKYKQTGKPVSN 177 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 Q+A G I+ R + I+ L +I + + K+ P L ++ + Sbjct: 178 DEMDYWSHQLAIYGENIDTYRQKYISEL-KMIFKRISKQFLPEFSLEISYNKGWDSSVN- 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + L + D+ T IG H++D+ + D + S G+ ++++ + Sbjct: 236 ------FVSALREKLLYDTRMGYTSIGIHKADIKIK-ADNIVATERLSRGQLRMLVAALQ 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ + +T + + LLD+I A LDEDKR + +Q+F+T +KS + + Sbjct: 289 LSQTLHLFESTNKSGVFLLDDIGAELDEDKRYHFIDALLATNTQLFVTAIEKSHLSFVEK 348 Query: 361 --TAKFMRISNHQA 372 K + + Sbjct: 349 YNDKKMFHVEHGHV 362 >gi|157964093|ref|YP_001498917.1| recombination protein F [Rickettsia massiliae MTU5] gi|166918725|sp|A8F0D4|RECF_RICM5 RecName: Full=DNA replication and repair protein recF gi|157843869|gb|ABV84370.1| DNA replication and repair protein RecF [Rickettsia massiliae MTU5] Length = 360 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 119/361 (32%), Positives = 188/361 (52%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A AD+ + Sbjct: 6 LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICK 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S A ++ GLA+ + + + +R R + N+ I +EL+K + WL Sbjct: 66 T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W I Sbjct: 122 PHMEGIFTSSSSDRRKFLDRIVYNFDPKHTELVSKYEYYMHERNKILVEDIRDDNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA++ I R++ + + I + + FP LS+ G ++ K + Sbjct: 182 EEKMADISNHIANNRLKTLEFMQHAIDDL--ENEFPKADLSIDGIVEQKILNGEENIVSF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 ITAELYQTRNNDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T APILLLDE+ HLD+ +R L T + Q+++T T+ ++ A+ ++ Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFFTGLNMQLWVTTTNLEGIENFATKAQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|325677517|ref|ZP_08157181.1| recombination protein F [Rhodococcus equi ATCC 33707] gi|325551764|gb|EGD21462.1| recombination protein F [Rhodococcus equi ATCC 33707] Length = 408 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 88/394 (22%), Positives = 165/394 (41%), Gaps = 37/394 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++ +FR++ ++ + + T+FVG NG GKTN+LEA+ +LS R +S A + Sbjct: 1 MFVRKFSLRDFRSWDAVTVDLEPGCTVFVGRNGHGKTNLLEALGYLSTLSSHRVSSDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+P +A ++ I +E D ++ R +IN R E+ L+ Sbjct: 61 IRAGAP---QAYAGALIANHGRELGIDIEINDGKANRA-RINQSPARRPREIVGILQTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 P + G +RRRFLD ++ A PR D+++++R R+ LL Sbjct: 117 FAPEDLSLVRGDPGDRRRFLDELLTARRPRMAGVRADYDKVLRQRSALLKTAGGALRRGA 176 Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLT 229 +G + + +A G ++ +R+ +++ L+ ++ + + Sbjct: 177 RSSDGASALATLDIWDGHLAAHGAQLLASRLRLVHDLAPHLVASYRSLAPESRPASVRYK 236 Query: 230 GFLDGKF------------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 L L+ + +L + R+ + L+GPHR DL + Sbjct: 237 SSLGTSLPTELLDPTREPEPDDVELLEVSFLNELSEMRQREIERGVCLVGPHRDDLELIL 296 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 D+ S GE + + L L+ + G P+L+LD++ A LD +R A Sbjct: 297 GDQPAK-GFASHGESWSFALSMRLGAFFLLRD-DGSDPVLMLDDVFAELDRKRRAA-LAG 353 Query: 338 VTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNH 370 V Q+ +T + V L +A + H Sbjct: 354 VAAQAEQVLITAAVAEDVPAEL--SATRFGVEAH 385 >gi|157826419|ref|YP_001495483.1| recombination protein F [Rickettsia bellii OSU 85-389] gi|226737824|sp|A8GUF0|RECF_RICB8 RecName: Full=DNA replication and repair protein recF gi|157801723|gb|ABV78446.1| recombination protein F [Rickettsia bellii OSU 85-389] Length = 360 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 121/361 (33%), Positives = 190/361 (52%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + +RN+ +L L D +G+NG GKTNILEAIS PGRG R A AD+ R Sbjct: 6 LHSLIVENYRNFKNLELKTDNIPITIIGENGSGKTNILEAISLFYPGRGLRSARLADICR 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S A ++ GLA+ S +++ +R R + N+ I +EL+K + WL Sbjct: 66 -ESEDHCSVRALLQSKLGLAEFSTQIKRISNR--RTTEYNNSKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF + +RR+F DR+V+ DP+H + +E M+ RN++L E +D++W +I Sbjct: 122 PQMEGIFMSGTSDRRKFFDRIVYNFDPKHAELVSKYEHYMQERNKILAEDMWDNNWLKTI 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA+ + I R++ + + I + + FP +LS+ G ++ K + Sbjct: 182 EEKMADTSIYIANNRLKTLEFMQQAIDDL--ENEFPKAELSIDGMVEQKILNGEEDVVGF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 A +L R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 IAAELHKTRDKDKLLGRTSFGVHKSDFLVKHKHKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T APILLLDE+ HLD+ +RN L I Q+++T TD + ++ ++ Sbjct: 300 AIKLTKTAPILLLDEVFVHLDDRRRNYLTEFFISINLQLWVTATDLKGIEEFGNKSQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|120435150|ref|YP_860836.1| DNA replication and repair protein RecF [Gramella forsetii KT0803] gi|226737803|sp|A0LZH4|RECF_GRAFK RecName: Full=DNA replication and repair protein recF gi|117577300|emb|CAL65769.1| DNA replication and repair protein RecF [Gramella forsetii KT0803] Length = 359 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 157/374 (41%), Gaps = 26/374 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ ++N + FD + VG+NGVGKTN+L++I LS G+ + + Sbjct: 1 MHLKNLSLLNYKNLKTAEFDFDEKINCLVGNNGVGKTNVLDSIYLLSFGKSYFNPITSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S FF + + I L + + ++ N+ V + + Sbjct: 61 INHDSD-FFVVEGEFKKNDKAEKI---LASAKKGQKKIIKRNNKAYEKVSDHIGFIPTVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S RR+F+D ++ D + +++ + +L+ RN LL F+ Sbjct: 117 ISPADRDLIIEGSETRRKFMDGVISQSDQSYLNKLLQYTKLVSQRNSLLKYFAANNTFER 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238 QM+ LG + R E + + + N + ++ L FD Sbjct: 177 DTLEVYNLQMSSLGQDLFEKRKEFLKEFIPIFNKRYADITNNKEIVDINYKSQL---FDN 233 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S L L + + D + T +G H+ DL + I GS G+QK L+ Sbjct: 234 SLANL-------LEENLQKDMALQYTSVGTHKDDLSFEIEGHPIK-KFGSQGQQKSFLIA 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS---- 353 + LA I + PILLLD+I LDE++ + +V TD QIF++ T Sbjct: 286 LKLAQFDFIKKISKVNPILLLDDIFDKLDENRVAHIVALVATDELGQIFLSDTHAERTEK 345 Query: 354 VFDSLNETAKFMRI 367 V S N++ K ++ Sbjct: 346 VVKSSNQSYKIFKL 359 >gi|299143459|ref|ZP_07036539.1| DNA replication and repair protein RecF [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517944|gb|EFI41683.1| DNA replication and repair protein RecF [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 361 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 176/373 (47%), Gaps = 18/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L +S FRNY L Q + G+N +GKTN+LEAI L+ G+ FR +++ Sbjct: 1 MKILNLELSNFRNYKYLYYNPKGQINVITGENAMGKTNLLEAIYVLTVGKSFRTVKDSEL 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 +IG + E D++I + ++ S+ +N + + + Sbjct: 61 IQIGGEQTNLKALSINFEYEDYLDVNIYKDKKNKYSINSDDMN------LSQYRRDFSSV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 PS + ERR++LD ++ + + + + +++ RN+LL + + Sbjct: 115 IFSPSDLNMVKFSPSERRKYLDSLILKLSSVYEHNLYRYRKIIFERNKLLKK-NINYDLL 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+A+ GVKI R++++ + + ++ +K++ + D+ Sbjct: 174 EVYDFQLAKYGVKILRERLKILKEFENYVKYHFLNLSGGESLKITYLSTIPLMSDEE--E 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ + L + RK D + T IGPHR D+ + + +GS GE + V++ + L+ Sbjct: 232 MEKIFLDSLKNCRKRDLEIKFTTIGPHRDDIDFKIENLSAK-TYGSQGEIRTVVLSLKLS 290 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSLNE 360 +I N +P+LLLD++ + LD+++ + L + ++ Q F+T T ++ F SL Sbjct: 291 EVDIIKNYQKNSPLLLLDDVFSELDKNRASYLINSLKNM--QTFITSTNLNEENFRSL-- 346 Query: 361 TAKFMRISNHQAL 373 A F I N Q + Sbjct: 347 NADFYEIKNGQII 359 >gi|257437731|ref|ZP_05613486.1| DNA replication and repair protein RecF [Faecalibacterium prausnitzii A2-165] gi|257200038|gb|EEU98322.1| DNA replication and repair protein RecF [Faecalibacterium prausnitzii A2-165] Length = 373 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 85/381 (22%), Positives = 157/381 (41%), Gaps = 28/381 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L ++ +RN AS L + T+ G+NG GKTN+LEAI L+ G+ FR A++ Sbjct: 1 MRLLSLEVTNYRNIASASLTPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLAD------ISIKLETRDD-RSVRCLQINDVVIRVVDELN 117 R G P + + + + + + + T D R R +N R L Sbjct: 61 VRRGEPFAVLEASTLRAQQEEQEPDEPNRVRLTVGTPDSQRPGRYASVNGAAPRRAAGLA 120 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 P + G RR+FLD + + P + + R ++ +N LL Sbjct: 121 GSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLTVYRRYLRALQQKNALLRRSP 180 Query: 178 FDS--------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 + + ++A G I R + L+ L ++ + ++ L Sbjct: 181 AGQERPYAEKMALLEVLNTELAAQGEAIQQRRRAYLERLAPLACANYEELSHGAERMELR 240 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 +F+ A L + + + ++L GPHR D+ + D S Sbjct: 241 YA--AQFEPGG------LAALLKARQNEEVRAGQSLCGPHREDMEL-LLDGQPARVFASQ 291 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ V++ + +A A + TG P+LLLD++ + LD+ ++ L + + Q F+T Sbjct: 292 GQQRSVVLSLKMAEAAAAAAITGEHPVLLLDDVLSELDDGRKQYLLTRMREK--QTFVTS 349 Query: 350 TDKSVFDSLNETAKFMRISNH 370 D + F L + R++ Sbjct: 350 CDDTAF--LKTDGEVYRMNGG 368 >gi|194332856|ref|YP_002014716.1| DNA replication and repair protein RecF [Prosthecochloris aestuarii DSM 271] gi|226737818|sp|B4S937|RECF_PROA2 RecName: Full=DNA replication and repair protein recF gi|194310674|gb|ACF45069.1| DNA replication and repair protein RecF [Prosthecochloris aestuarii DSM 271] Length = 370 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 81/363 (22%), Positives = 155/363 (42%), Gaps = 10/363 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + I FR ++ L + G NG GKTNILEAI + + +GF R + Sbjct: 1 MRLDEIKIQNFRKHSELIFSPSEGINLIFGPNGSGKTNILEAIHYCALTKGFNRTTDRQC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + SF + + T +S + +N+ + L + Sbjct: 61 MNFSAESFLLKSLFTSDTGCQYRVHVDFSTNGGKS---ISLNNSQLEKFSALIGLIPCIL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P+ I G ERRRFLD + I + +++ + R+++ RN LL + SS Sbjct: 118 FSPAEITIVHGSPQERRRFLDNALCQISKSYLEQLLQYRRILQQRNALLHSSWDRSSPAP 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-KLSLTGFLDGKFDQSF 240 + +AE G I R++ ++ + I +L+ L S Sbjct: 178 DMNIWTELLAESGAFIIKERMDFLDEFQPYFSNAYAILDTGEIPRLTYRSSLGKALVSSD 237 Query: 241 CA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 A + + + + + + + ++TL+GPHR +++ Y D + + S G+ + L+ + Sbjct: 238 RAGIADSLMHRFGEIQHQEQVRKQTLLGPHRDEILF-YLDGSDVKKYASQGQTRTFLIAL 296 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 +A R + + G I LLD+I + LD+ + + ++ G Q +T T+K+ L+ Sbjct: 297 KVALQRFLFDKKGEQSIFLLDDIFSELDQRRVERVLEMIAGFG-QSLITSTEKTGLSFLH 355 Query: 360 ETA 362 E + Sbjct: 356 EIS 358 >gi|289662281|ref|ZP_06483862.1| recombination protein F [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 368 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 145/368 (39%), Gaps = 9/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + L+I R + ++ L + + G+NG GKT++LEA+ ++ GR FR + Sbjct: 1 MHAVRLSIHRLRRFQTVELHPASALNLLTGNNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ EG + + + R +++ + + L L + Sbjct: 61 IQQGANDLEVFVEWKEGSGVAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPRMLE 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R+ + L ++ P + LS F G Sbjct: 180 AWDHELAESGETLTSRRMRYLERLQDRLIPVAGAI-APSLGLSALAFAPGWKRHEVS--- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R+ D + T GPHR+D + + A S G+ K+ + LA A Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWMPRFDVLPGKDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 + G P++ LD++ + LD + + + + +Q+ +T T+ + Sbjct: 293 EDFAFERGEWPVIALDDLGSELDRHHQARVLQRLVSAPAQVLITATETPPGLVDAGALLQ 352 Query: 364 FMRISNHQ 371 + + Q Sbjct: 353 RFHVEHGQ 360 >gi|283457092|ref|YP_003361655.1| recombinational DNA repair ATPase [Rothia mucilaginosa DY-18] gi|283133070|dbj|BAI63835.1| recombinational DNA repair ATPase [Rothia mucilaginosa DY-18] Length = 450 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 88/388 (22%), Positives = 157/388 (40%), Gaps = 26/388 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I +++ ++R YA L L A T+F+G NGVGKTNI+EAI + + R + + Sbjct: 38 VYIDHISLLDYRTYALLSLPLSAGVTVFLGSNGVGKTNIVEAIDYAASLSSHRVSHDGPL 97 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + R + G + E +S R ++IN E R Sbjct: 98 VRAGAS---RAYIRTRTVRGSQQTVTEFEIAPGQSNR-VRINRAAPVRAKEALGIARTVL 153 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P ++ G RRRF+D + ++ P ++ER++R RN LL ++ Sbjct: 154 FSPEDLQLVKGDPAGRRRFVDDLASSLRPVVSGYRSEYERILRQRNSLLKSMQRNARDEN 213 Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-------- 230 S S + Q++ LG ++ AR ++ + ++ Sbjct: 214 ALSTLSVWDEQLSTLGAQLLSARFRLLQRFLPQLRRAYAGLTDGSKEVGFNYESTVFSSM 273 Query: 231 ---FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 ++ LKE + + R+ + TL+GPHR D+ + + Sbjct: 274 GERSIEHAALMRVEDLKEALMRGFAERRRDEIERGVTLVGPHREDITLLLGGMPVKY-FA 332 Query: 288 STGEQKVVLVGIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 S GE + + LA + G +PIL+LD++ A LD +R+ L +V D Q Sbjct: 333 SHGESWSFALALKLASWFVHVEDDSSVGSSPILILDDVFAELDSARRHRLGAMVADAE-Q 391 Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372 + +T S + + ++ +A Sbjct: 392 VLITCAVLSDIPEELGDYRLVSVTAGRA 419 >gi|227549439|ref|ZP_03979488.1| recombination protein F [Corynebacterium lipophiloflavum DSM 44291] gi|227078516|gb|EEI16479.1| recombination protein F [Corynebacterium lipophiloflavum DSM 44291] Length = 394 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 100/393 (25%), Positives = 173/393 (44%), Gaps = 33/393 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ +FR++ L L + T+F G NG GKTNI+EA+ + S R ++ A + Sbjct: 1 MYVRDLDLRDFRSWPELTLTLEQGATVFAGRNGHGKTNIVEALHYTSTLGSHRVSTDAPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G S +G E + IK QIN ++ E+ LR Sbjct: 61 IRSGCSDARVSVTTVNDGRELTTHLLIK-----ANGANQAQINRTRLKSAREVLGVLRTV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL-------LTEG 176 P ++ +G ERRRFLD + + PR D+++++R RN L L G Sbjct: 116 MFSPEDLKLVAGEPAERRRFLDDLATSRAPRLGGAKADYDKVLRQRNALLRSSAHELRRG 175 Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228 Y D + + Q+A LG ++ R+E+++ LS I E +S Sbjct: 176 YGDDTGASALATLDVWDLQLARLGAEVTAGRLELLDVLSPHIAESYAAVAPESRPASVSY 235 Query: 229 TGFLD-------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 + +D G+ + ++ +L R+ + TL+GPHR D+++ D Sbjct: 236 SSTVDDAVRSLAGEPSRDPGVIEAAMLTELARRRREEIERTTTLVGPHRDDMVLMLGDTP 295 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + LA L+++ G P+L+LD++ A LD +R L V Sbjct: 296 AK-GYASHGETWSYALALHLAEYELLASE-GSHPVLILDDVFAELDALRRQRLV-AVAHS 352 Query: 342 GSQIFMT-GTDKSVFDSLNET-AKFMRISNHQA 372 Q+ +T + D+L + + +S H+A Sbjct: 353 AEQVLITAAVGDDLPDNLADAVSARYLVSMHEA 385 >gi|225012738|ref|ZP_03703173.1| DNA replication and repair protein RecF [Flavobacteria bacterium MS024-2A] gi|225003271|gb|EEG41246.1| DNA replication and repair protein RecF [Flavobacteria bacterium MS024-2A] Length = 359 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 86/354 (24%), Positives = 153/354 (43%), Gaps = 18/354 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + ++ ++N S F+ + F+G+NGVGKTNIL+AI L+ G+ + Sbjct: 1 MHLKQITLTNYKNITSKTFDFNPKINCFIGNNGVGKTNILDAIYHLAFGKSYFNPISIQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +IG+ FF+ R E E I ++ + L+ N + + + + Sbjct: 61 IQIGTD-FFALEGRYETNEREEKIICSVK---KGQKKTLKRNGKIYDRIADHIGLIPTVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S S RR+F+D ++ D R +I++ +++ RN LL FD+ Sbjct: 117 ISPADRDLISEGSSTRRKFIDAVIGQTDAEFLRNLIEYNKILSQRNALLKYFALNHTFDA 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 Q+ G I+ R + + E + + L+ +D Sbjct: 177 DTLEIYNEQLTTRGQPIHEKRKLFMEQFIPIFKERYHSISDKKETVDLS------YDSQL 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + L + D M + T G H+ D+ + D+ GS G+QK LV + Sbjct: 231 HTISHKIL--LEESLSKDRMIQHTTTGIHKDDIHL-LKDEQPIKKFGSQGQQKTFLVALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS 353 LA + TG APILLLD+ LD+ + + + +V QIF+T T + Sbjct: 288 LAQFDFLKAETGVAPILLLDDAFDKLDQQRVSQIISLVDQNDFGQIFITDTHED 341 >gi|332881092|ref|ZP_08448760.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681004|gb|EGJ53933.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 359 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 82/359 (22%), Positives = 149/359 (41%), Gaps = 18/359 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + ++N +S L F A FVG+NG GKTN+L+AI L G+ + S Sbjct: 1 MFLKKVTVVNYKNISSKTLEFSATINCFVGNNGAGKTNLLDAIYHLGMGKSYFSPSAVQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F+ E I L+ + ++ N + + + Sbjct: 61 IRHDED-FYLIDGFFESNSREEQIVCSLKKGQKKMMKH---NGKAYERLSDHIGKYPMVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 + P+ + S RR+FLD ++ D + +I + RL+ RN LL + Sbjct: 117 ISPADRDLIVEGSETRRKFLDSVIAQTDREYLELLIRYNRLLLQRNTLLKQIAESGISAF 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +AQ+A LG I R + + + + ++ + Sbjct: 177 DTLQVYDAQLAPLGQFIYEKRRQFMEGFAPIFSYQYAYIAGGQEEVKVVY--------ES 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ L ++ D ++ T G H+ DL ++ I +GS G+QK +L+ + Sbjct: 229 MLHEQTQEALLAQHQQRDLQAQYTTAGIHKDDLRLEIQGYPIK-KYGSQGQQKSLLIALK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTDKSVFDSL 358 L+ L+ +T G PI+LLD+I LD+ + L ++VT Q+F+T T + + Sbjct: 288 LSQFELLKHTLGITPIVLLDDIFDKLDDTRVAQLVQLVTQNHFGQLFITDTHSQRTEEV 346 >gi|285016824|ref|YP_003374535.1| DNA replication and repair protein RecF [Xanthomonas albilineans GPE PC73] gi|283472042|emb|CBA14549.1| probable dna replication and repair protein recf [Xanthomonas albilineans] Length = 366 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 144/375 (38%), Gaps = 16/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+ R + S+ L + GDNG GKT ILEA+ ++ GR FR + Sbjct: 1 MHLFRLDFHHLRRFPSIELTPAPGMNLITGDNGAGKTTILEAMHLMAYGRSFRCRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDD----RSVRCLQINDVVIRVVDELNKHL 120 R G VE E AD R +++ + + L L Sbjct: 61 IRQGQAGLD---VFVEWHEQAADTGQTRRRRAGLQHSGQDWRGRLDGQDVPYLGTLCAAL 117 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + P + SG RRRF+D +F ++P + R ++ RN LL G + Sbjct: 118 AVVTFEPGSHVLVSGGGEARRRFVDWGLFHVEPDFLSLWRRYARALKQRNALLKSGGAGA 177 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + + ++AE G + R + P + +L G +F + Sbjct: 178 A-LDAWDHELAEAGEPLTSRRQHY-----LDRLLRRLLILAPELAPAL-GIEQLQFSPGW 230 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + A L R D T +GPHR+D + + A S G+ K+ + Sbjct: 231 RRHEISLADALLLNRDRDRQLGYTTVGPHRADWSLSFAAIPGRDAL-SRGQAKLTALACL 289 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359 LA A + G P++ LD++++ LD+ + + + + +Q+F+T T+ Sbjct: 290 LAQAEDYAEQRGEWPVIALDDLASELDQHHQARVLQRLRAGPAQVFLTATETPQALSDAG 349 Query: 360 ETAKFMRISNHQALC 374 + + Q L Sbjct: 350 LPIARFHVEHGQILS 364 >gi|50953929|ref|YP_061217.1| recombination protein F [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648822|sp|Q6AHN3|RECF_LEIXX RecName: Full=DNA replication and repair protein recF gi|50950411|gb|AAT88112.1| DNA replication and repair protein RecF [Leifsonia xyli subsp. xyli str. CTCB07] Length = 385 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 171/391 (43%), Gaps = 31/391 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++++FRNY + + F+A +FVG NG GKTN++E++ +LS R +S + Sbjct: 1 MRVTHLSLTDFRNYGTAEVHFEAGANLFVGRNGQGKTNLVESLGYLSALGSHRVSSDQAM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ AR++ ++ ++++ + R Q+N I+ EL ++ Sbjct: 61 IRQGAE-LAVVRARIQ--HEARELLVEVQLNRGAANRA-QVNRAAIK-PRELPRYFSSVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P + G RRRFLD+++ +PR + ++ER+++ RN LL Sbjct: 116 FAPEDLALVRGEPGVRRRFLDQLLIQRNPRLSAVIAEYERVLKQRNTLLKSARASRFRED 175 Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--------FPHIKLSLTG 230 + ++ LG ++ AR++++ LS+ ++ + P + +S Sbjct: 176 QLGTLDIWDDRLLTLGAELINARLDLMARLSNPLVAAYRSVAGDDHHPRLLPQLTISGAH 235 Query: 231 FLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 D D +F + + + L R + TL+GPHR D++ + Sbjct: 236 VEDEDDDSVADMTSAFGDTTDVFRQALAGVRWKELERGLTLVGPHRDDVLFELNGLPAK- 294 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNT--TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S GE + + LA A L+ TG P+L+LD++ A LD +R L V Sbjct: 295 GYASHGESWSFALALKLASAELLRRESVTGD-PVLILDDVFAELDWARRRMLATTVAGYE 353 Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 + + V L A +RI + Sbjct: 354 QVLITAAVYEDVPAEL--AAHTIRIEAGAIV 382 >gi|16124414|ref|NP_418978.1| recombination protein F [Caulobacter crescentus CB15] gi|221233097|ref|YP_002515533.1| recombination protein F [Caulobacter crescentus NA1000] gi|239977550|sp|B8GXP9|RECF_CAUCN RecName: Full=DNA replication and repair protein recF gi|239977551|sp|P0CAW1|RECF_CAUCR RecName: Full=DNA replication and repair protein recF gi|13421272|gb|AAK22146.1| recF protein [Caulobacter crescentus CB15] gi|220962269|gb|ACL93625.1| DNA replication and repair protein recF [Caulobacter crescentus NA1000] Length = 387 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 130/378 (34%), Positives = 199/378 (52%), Gaps = 16/378 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 + L +++FR+Y RL + G NG GKTN+LEAIS LSPG+G R S A+V Sbjct: 5 ALLSLTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGKGLRGVSLAEVG 64 Query: 66 RI--GSP--SFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R G ++ A V+ G + I +E + + R +++ + L H+ Sbjct: 65 RRLPGEAVGRAWAVAAEVQSGEDAPVRIGTGVE-QGGAARRTVRLEGETV-PPGRLADHV 122 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----- 175 R WL P+ DR+F + ERRRF DR+VFA +P H +++ R R RLL + Sbjct: 123 RPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPAHAANANGYDKAQRERMRLLVDAAETG 182 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-- 233 D++W +++EA++AE G + AR + AL + I + FP +L LTG + Sbjct: 183 APADAAWLTALEARLAEFGALLAQARARTLLALQAEIDGRGDR-PFPLARLGLTGEWERM 241 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 F ++ + A+ L R D + R L GPHR DL + + +K A STGEQK Sbjct: 242 ALEGAPFAEIELKLAQALASARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQK 301 Query: 294 VVLVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +++ + LA ARL + P++LLDE++AHLD +R AL +T + Q F+TGTD+ Sbjct: 302 ALILNLVLAQAARLSRAESAPNPVILLDEVAAHLDLTRRAALADELTALKLQAFLTGTDE 361 Query: 353 SVFDSLNETAKFMRISNH 370 S+FD L A +R+ + Sbjct: 362 SLFDHLKGRALGVRVGDA 379 >gi|84621660|ref|YP_449032.1| recombination protein F [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123523723|sp|Q2P9L9|RECF_XANOM RecName: Full=DNA replication and repair protein recF gi|84365600|dbj|BAE66758.1| DNA replication and repair protein recF [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 362 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 147/371 (39%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MHVMRLSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ EG + + + R +++ + + L L + Sbjct: 61 IQQGANDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQG-AQPRMLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R+ + L ++ V P + LS F G Sbjct: 180 AWDHELAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPGWKRHEVS--- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R D + T GPHR+D + + A S G+ K+ + LA A Sbjct: 236 --LADALLLARDRDRQNGYTSQGPHRADWMPHFDVLPGKDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + P++ LD++ + LD + + + +Q+ +TGT+ + L + Sbjct: 293 EDFAFERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITGTE--IPPGLADAGAL 350 Query: 365 ---MRISNHQA 372 + + Q Sbjct: 351 LHRFHVEHGQV 361 >gi|58579626|ref|YP_198642.1| recombination protein F [Xanthomonas oryzae pv. oryzae KACC10331] gi|75508390|sp|Q5H713|RECF_XANOR RecName: Full=DNA replication and repair protein recF gi|58424220|gb|AAW73257.1| DNA replication and repair RecF protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 368 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 146/371 (39%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + Sbjct: 1 MHVMRLSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ EG + + + R +++ + + L L + Sbjct: 61 IQQGANDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RRRFLD +F ++P + R ++ RN LL +G Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQG-AQPRMLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R+ + L ++ V P + LS F G Sbjct: 180 AWDHELAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPGWKRHEVS--- 235 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L R D + T GPHR+D + + A S G+ K+ + LA A Sbjct: 236 --LADALLLARDRDRQNGYTSQGPHRADWMPHFDVLPGKDAL-SRGQAKLTALACLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + P++ LD++ + LD + + + +Q+ +T T+ + L + Sbjct: 293 EDFAFERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITATE--IPPGLADAGAL 350 Query: 365 ---MRISNHQA 372 + + Q Sbjct: 351 LHRFHVEHGQV 361 >gi|114326984|ref|YP_744141.1| recombination protein F [Granulibacter bethesdensis CGDNIH1] gi|114315158|gb|ABI61218.1| DNA replication and repair protein recF [Granulibacter bethesdensis CGDNIH1] Length = 373 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 117/355 (32%), Positives = 183/355 (51%), Gaps = 7/355 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 I+ L ++ FRNYA+L VG NG GKTN+LEAIS LSPGRG R A + Sbjct: 7 HIRTLTLTRFRNYAALAWSPPPGLVGVVGPNGSGKTNLLEAISLLSPGRGLRNARTDQLA 66 Query: 66 RIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G ++ AR+ G +++ + +R R ++I+ +IR EL H+ Sbjct: 67 RQGEGGDGSWAVHARILSPTGPVELATGVLPGTER--RQVRIDGDIIRGQAELGAHITTV 124 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P MDR+F RRRFLDR+V+ ++P H R + + R RLL D +W Sbjct: 125 WLTPQMDRLFQEGPAGRRRFLDRLVYGLEPAHAREVAAQAASLTERARLLA-MRADPAWL 183 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFCA 242 +++E +A + +R+ + L+ ++++ FP +L L + + + Sbjct: 184 AAVEDSIARHATAVTASRLAYVTRLNDVLVQ-GGAGGFPPARLDLNCAIATRLSRHPAVE 242 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ L D R+ D S IG HRSDL++ + + STG+QK +L+G+ L Sbjct: 243 VEDWLRAALRDSRETDGESGTQGIGAHRSDLLMKDAATGRSASIASTGQQKALLIGVTLG 302 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 HA L+ G AP++LLDE HLD ++R L + +G Q F+T TD+ FD+ Sbjct: 303 HAVLLKAVRGRAPVMLLDEPMTHLDAERRRLLLTALRGLGGQGFLTATDRDAFDA 357 >gi|311745376|ref|ZP_07719161.1| RecF protein [Algoriphagus sp. PR1] gi|126577921|gb|EAZ82141.1| RecF protein [Algoriphagus sp. PR1] Length = 366 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 162/378 (42%), Gaps = 22/378 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ +F+N+ +LVF Q VG NG GKTNIL+ I +LS + ++S + Sbjct: 1 MHLKSLDLLQFKNHEKTQLVFSPQINCIVGLNGSGKTNILDGIHYLSLTKSAVQSSDSLN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FF+ E ++ +E + + N + E L + Sbjct: 61 VLHD-KDFFAIKGHFEIESKPLEVRCTVELGKKKQIFQ---NGKALDKTSEHVGLLPLVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 + P + G S RR+F D ++ +D + ++I + ++ RN LL + G D Sbjct: 117 IAPDDTDLIRGGSDGRRKFFDGLLSQLDRNYLNQLIRYHHFLKQRNALLKKFAETGRRDL 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + S + +M L I R E++ ++ ++ + + K+++ Sbjct: 177 TLLGSYDEEMIILSKAIATRRAELLEEVAPMLQSHYAAISQGQEKVTIVY--------ET 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 AL+E+++ RK D +++ + G H+ D D I GS G+QK ++ + Sbjct: 229 EALREDFSNYFSSLRKKDFITKNSNAGIHKDDYSFLIGDHPIR-KIGSQGQQKSFIISLK 287 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS----VF 355 LA ++ N G P+LLLD+I LD+ + + +++ QIF+T + Sbjct: 288 LAQFQIFENAKGEKPLLLLDDIFDKLDDTRIAQMMQLISQHTFGQIFLTDARPERSQKIL 347 Query: 356 DSLNETAKFMRISNHQAL 373 L+ F + + Sbjct: 348 SQLDSEVFFFELEKGNVI 365 >gi|310777808|ref|YP_003966141.1| DNA replication and repair protein RecF [Ilyobacter polytropus DSM 2926] gi|309747131|gb|ADO81793.1| DNA replication and repair protein RecF [Ilyobacter polytropus DSM 2926] Length = 376 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 161/370 (43%), Gaps = 14/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I +N FRN L F ++ +F+G NG GKT+ILEA+ F + G+ FR ++ Sbjct: 1 MQISEINYVNFRNLKDNNLKFSSKFNLFLGKNGQGKTSILEAVYFSATGKSFRTPRQNEI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S +F E +S+KL + + N ++ D+ + L I Sbjct: 61 INH-SRERTGSFVVFEDSISKKTLSVKL----GKGKKEYSYNKKRVK-YDDFHGKLNIVS 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + + + + + ++ +L++ RN+ L E + Sbjct: 115 FIPEDISLLTGAPGVRRSFFDYEISQANKEYYQDLKNYTKLLKFRNKYLKEKKHNDPMFD 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCA 242 + + + G +I R++ + +S L+ +K ++L + FL Sbjct: 175 IYQNEFIKFGARIIKKRLDYVRNISILLNLNYRKLFDDKKELRLKYSCFLGELKKVETAQ 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ +K+ + +L+GP + D I DK ++ S GE+K ++ I L+ Sbjct: 235 IEKLIQEKINQVFWQEKRYGFSLVGPQKDDFIFLLNDKEAK-SYASQGEKKSIVFSIKLS 293 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I +PI ++D+IS++ D ++ ++ + Q+F++ T LN + Sbjct: 294 EIDMIIKEKKESPIFIIDDISSYFDSLRKESIIKYFKKRDIQLFISSTT-----DLNMAS 348 Query: 363 KFMRISNHQA 372 K I Sbjct: 349 KNFYIEKGDI 358 >gi|162147557|ref|YP_001602018.1| recombination protein F [Gluconacetobacter diazotrophicus PAl 5] gi|161786134|emb|CAP55716.1| putative DNA replication and repair protein recF [Gluconacetobacter diazotrophicus PAl 5] Length = 373 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 133/367 (36%), Positives = 192/367 (52%), Gaps = 5/367 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +++FRNY L +A T+ G+NG GKTN+LEA+S L PGRG R A A++ Sbjct: 3 RLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAEMA 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + + AR G +G A I + R R + + +R L HL W Sbjct: 63 RHGT-TIWGVAARFTGPDG-APFDIATGSDPARPERRVFRRDGETLRSRAALADHLSAVW 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P MDR+F RRRFLDR+V A++P H R + ++ M RNRLL G D W S Sbjct: 121 LTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQAMGQRNRLLAAGRADPGWLS 180 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCAL 243 ++E MA V + AR+ ++ L+ V + FP +L + + D+ A+ Sbjct: 181 ALEDSMARHAVAASAARLALVTQLNGEAAHTV-PDGFPPARLDILCPIVQQLRDRPALAV 239 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ +L GR DS IG HR+D+ + A STG+QK +L+G+ LAH Sbjct: 240 EDWLRGRLAAGRACDSARGGAGIGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLAH 299 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 A L++ + G AP++LLDE HLDE +R ALFR V + + MTGTD F L A Sbjct: 300 AALMTRSRGEAPMILLDEPLVHLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRAG 359 Query: 364 FMRISNH 370 F+ N Sbjct: 360 FVSPRNG 366 >gi|227500983|ref|ZP_03931032.1| possible recombination protein F [Anaerococcus tetradius ATCC 35098] gi|227216756|gb|EEI82154.1| possible recombination protein F [Anaerococcus tetradius ATCC 35098] Length = 359 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 161/370 (43%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L ++ FRNY + F+ IF+GDN GKTN+LE++ +L+ R F++ D+ Sbjct: 1 MWIKDLKLNNFRNYFYESVEFNKDTNIFIGDNAQGKTNLLESVYYLANARSFKKIRDKDI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S S V ++ I++ +D + + +N V +L +I Sbjct: 61 VRF-SQSQMKLAGTVRKGRSFKEVLIEVNDKD----KSIFVNGVKYDRSKDLKSLFKIVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182 P I RR +D+++ ID ++ D+++++ RN+LL Sbjct: 116 FTPEDLAIIKDGPNLRRDLIDKIIEGIDLSYKSYKRDYDKILYQRNKLLKNTKSQYFKEQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ + +++LG +I +R++ I + ++ +L L+ D Sbjct: 176 LAAFDKSLSKLGYRIYKSRLKFIKIIDQYARDFHSSLTSSKEELRLSYLADIS-----PK 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EEY + R D + G HR D+ + K T S G+Q+ ++ I LA Sbjct: 231 DLEEYEEIFATSRDKDLKYLTSQRGIHRDDIEITINGKD-TKNFASQGQQRSAILNIRLA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +LI TG ++L D++ + LDE + L + G Q +T T+ + +++ Sbjct: 290 EVKLIKEVTGDEAVILFDDVFSELDEKRSVFLLENLN--GYQTIITATNTKSLEYIDKD- 346 Query: 363 KFMRISNHQA 372 K I + + Sbjct: 347 KISYIFDGKI 356 >gi|319949429|ref|ZP_08023490.1| recombination protein F [Dietzia cinnamea P4] gi|319436891|gb|EFV91950.1| recombination protein F [Dietzia cinnamea P4] Length = 410 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 156/375 (41%), Gaps = 26/375 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++ L L + T +G NG GKTN+LEAI L+ R R A A + Sbjct: 1 MHLRHLRLLDFRSWPLLELDLEPGVTTLIGRNGHGKTNVLEAIGVLASLRSHRVAGDAPM 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G+ + A G E ++++L ++ R ++N R + ++ ++ Sbjct: 61 IRTGAGTALVGALAHNAGRE----LTVELALNSGKANRA-RLNTSPCRRLSDILGVVQSV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176 P + G ERRR LD ++ P + ++ ++R R LL G Sbjct: 116 LFAPEDLALVRGEPAERRRLLDELMVQRRPSLGGDLAEYSSVLRQRTALLKSASGALRRG 175 Query: 177 YFDSS-----WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLT 229 + S + ++AELG ++ R++++ L L+++ + L+ Sbjct: 176 RPEESAAVLDTLDVWDGRLAELGARLVAGRIDLLRQLRPLVVDAYRGLAPESRPAGLAYR 235 Query: 230 GFLDGKFDQSFCALKE----EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 + D+S E +L R+ + +L+GPHR DL++ D+ Sbjct: 236 FRVADTPDESELTDPELVEAVLLAELGRRRRDEIDRGMSLVGPHRDDLLLTLGDEPAK-G 294 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 S GE + + L L G P+LLLD++ A LD +R AL + + + Sbjct: 295 FASHGETWSFALALRLGSLELF-RADGAEPVLLLDDVFAELDRHRRAALADVAAGVEQVL 353 Query: 346 FMTGTDKSVFDSLNE 360 + V L Sbjct: 354 ITAAVGEDVPAGLRG 368 >gi|313159177|gb|EFR58550.1| DNA replication and repair protein RecF [Alistipes sp. HGB5] Length = 448 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 154/373 (41%), Gaps = 18/373 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ F+N L VGDNG GKTN+++A+ +LS + + Sbjct: 1 MFLKKISLLNFKNIEQAELALCRGVNCLVGDNGAGKTNVIDAVYYLSMCKSSLPMTDGQS 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F + + +I + + L+ N + + + Sbjct: 61 IRHGADFFLAEGQYLTDGGKSENIVCSFS---RKGGKVLKRNGKEYERLSDHVGLVPAVI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P+ + S S ERRR+L+ + +D + ++ + ++ RNRLL D + Sbjct: 118 VSPADSALISDASDERRRYLNAFISQLDRSYLTAVMRYNAVLAERNRLLKNM-PDETMLQ 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+ E G +I+ R E L + EY + + ++ L + Sbjct: 177 IYDMQLVEQGERIHARRREFAERLQPVAAEYYRILSGDREQVELHYKSELNDRP------ 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + + L R+ D + T G HR DL++ + +GS G+QK L+ + LA Sbjct: 231 --FGEILLAARQKDLANEFTTSGIHRDDLVLRIGGYPLR-KYGSQGQQKSFLIALKLAQY 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA- 362 +++ G PILLLD++ LD + L R+V+ D QI +T + + + + A Sbjct: 288 TIVAQEKGEKPILLLDDLFDKLDAGRVEQLIRLVSEDSFGQIVITDCNPTRLRRILDKAG 347 Query: 363 ---KFMRISNHQA 372 + N Sbjct: 348 GAYSLFTVENGGI 360 >gi|296115231|ref|ZP_06833872.1| recombination protein F [Gluconacetobacter hansenii ATCC 23769] gi|295978332|gb|EFG85069.1| recombination protein F [Gluconacetobacter hansenii ATCC 23769] Length = 374 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 127/372 (34%), Positives = 193/372 (51%), Gaps = 7/372 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 + L +++FRNY L + T+ VG+NG GKTN+LE++S L PGRG R A AD+ Sbjct: 3 HLSRLVLTDFRNYRHLSWTPTSPVTVIVGENGSGKTNLLESVSLLLPGRGLRGARVADLP 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLRI 122 R G + AR++ +G+ L D + R ++++ +R ++ L Sbjct: 63 RHGGTR-WGIAARIDVPDGVEAGIRDLAVGSDPARPDRRVVRLDGEALRNRTRVSDFLSA 121 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P MDR+F + RRRFLDR+V A++P H R + + M RNRLL G D +W Sbjct: 122 VWLTPQMDRLFQEGAAGRRRFLDRLVLAMEPGHARELAAHDHAMMQRNRLLLSGGGDGAW 181 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241 S++E MA GV AR ++ L+ + FP L+L + Sbjct: 182 LSALEDAMARHGVAATAARAGLVALLNGDDAALC--DGFPATALTLESEIAQHLRHMPAL 239 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+++ ++L R+ D +G HR+DL + A STG+QK +LVG+ L Sbjct: 240 AVEDWLREQLAASRQRDRARGSAFLGAHRTDLHMHDRATRRGAAQSSTGQQKAMLVGVVL 299 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 +HARLI+ G AP++LLDE HLDE +RNALFR + + + + ++GTD + F L + Sbjct: 300 SHARLIARARGQAPLILLDEPLVHLDEVRRNALFRAIGRLDTTVMLSGTDAAQFGPLRDQ 359 Query: 362 AKFMRISNHQAL 373 A F+ L Sbjct: 360 AAFVMPREGALL 371 >gi|294085123|ref|YP_003551883.1| RecF protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664698|gb|ADE39799.1| RecF protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 418 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 200/370 (54%), Gaps = 6/370 (1%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 ++ + L ++ FRNY ++RL F + VG NG GKTN+LEAIS LSPG+G RRA A Sbjct: 34 PQLWLSGLLLNNFRNYETVRLEFGQAPVVLVGANGAGKTNLLEAISLLSPGKGMRRAKTA 93 Query: 63 DVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + RIG+ +S A +E +G+ I + R ++ + + D + L Sbjct: 94 HLARIGAAMPDWSVSAALETEDGVMQIGTGVPADSQTGRRIMRREGMTVSQAD-IATQLS 152 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 +SWL P MD +F RRRFLDR+V A D H R +E+LMR R L++EG D+ Sbjct: 153 VSWLTPQMDGVFIDSPGARRRFLDRLVIAFDAAHIGRTNRYEKLMRERTLLISEGRGDAG 212 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 W +++EA +AE + I AR +I+ L+ FP ++L L G ++ D+ Sbjct: 213 WFNALEASLAETAIAITAARRALIHDLNEEARHGWH--GFPGVRLELQGDIENWLDEMPA 270 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 E+ + D S L GPH S++ STG+QK +L+ + L Sbjct: 271 LAVEDRHMAAAANLRTDGTS--ALPGPHASEVNAYDVAGDTPAYLASTGQQKALLIAVVL 328 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 AHARL G PI+LLD+++AHLD +R+ALF + D+G Q + +G+D S+FD L + Sbjct: 329 AHARLQERRLGRPPIMLLDDVAAHLDAKRRSALFEALFDLGGQSWFSGSDASLFDGLGKA 388 Query: 362 AKFMRISNHQ 371 A+FM+I + + Sbjct: 389 AQFMKIHDAE 398 >gi|260904979|ref|ZP_05913301.1| recombination protein F [Brevibacterium linens BL2] Length = 374 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 158/372 (42%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L++ +R+Y L L F+ T FV DNG GKTNI+EAI +L+ R R A A + Sbjct: 1 MWISRLSLRNYRSYPELDLEFEPGVTTFVADNGTGKTNIVEAIGYLAHLRSHRVAFDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + A V + A + + ++++ R +N ++ + E+ + Sbjct: 61 VNESAQTA-TVSALVNRDQRHATVEVSIQSKGANRAR---VNRSPVK-MKEILGLVSCVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 P + G ERR ++D +V + +PR+ + DFER ++ RN LL D Sbjct: 116 FAPEDLSLVRGEPAERRSWMDTLVVSRNPRYSSVITDFERALKQRNALLKRLREDRDPGL 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH------IKLSLTGFLD 233 + A+ ++ R ++ + + + I+ +D Sbjct: 176 EATLDIWNMAYADSASELVYGRQRILADIVEPLQKNFAYIAADARLERQGIQARYDSRID 235 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 +S +E L R + TL GP R DL + D + S GE Sbjct: 236 YSQAESAAECRELLLAALERRRTTEIERGLTLHGPGRDDLALTIGDHPAK-GYASHGETW 294 Query: 294 VVLVGIFLAHARLISNTTG---FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349 + + + LA L+S+ G P+L+LD++ A LD +RN L +T+ Q+F+T Sbjct: 295 SLALAMQLAGWDLLSSDAGSAAEQPVLVLDDVFAELDTGRRNRLASRITEAE-QVFITAA 353 Query: 350 TDKSVFDSLNET 361 D + + L Sbjct: 354 VDGDLPEGLEGR 365 >gi|326793325|ref|YP_004311145.1| DNA replication and repair protein recF [Marinomonas mediterranea MMB-1] gi|326544089|gb|ADZ89309.1| DNA replication and repair protein recF [Marinomonas mediterranea MMB-1] Length = 366 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I++ RN ++ Q + VG+NG GKT++LEAI LS GR FR + Sbjct: 1 MPLARLDIAKLRNLTKIQFEPSHQVNVIVGENGSGKTSVLEAIHLLSYGRSFRSHKHKTY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + FA+++ + I +K R +++ + + EL + L + Sbjct: 61 IQHDQAECI-VFAQLKASTSVFPIGLK---RARDGAIDVRVQGEKVHSIVELAERLPVQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P R+ G RR+F+D F D + D+++ ++ RN LL G + + Sbjct: 117 INPDAFRLLEGSPKIRRQFVDWGAFHFDVQFMPAWRDWQKALKQRNSLLKRGKISPNLLA 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++ LG +N R + L + + + +SL ++ Sbjct: 177 AFDQELIRLGGTVNEVRQAYVKHLIPYFKTVLNALS-DELDVSLNFTQGWDAQKT----- 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A+ L G D T GP R+DL V S G+QK+V+ + +A Sbjct: 231 --LAEALESGVNRDIELGYTHSGPQRADLRVKTKAGDALDTL-SRGQQKLVVSALKIAQG 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA-- 362 +++++ G + L+D++ A LD + R L R++ + SQIF+T D + A Sbjct: 288 QVLTDM-GRPLVFLVDDLPAELDANHRQKLCRLLESLNSQIFITSVGSDSLDFVWSDATD 346 Query: 363 -KFMRISNHQ 371 + + N + Sbjct: 347 VRHFAMRNGE 356 >gi|332706260|ref|ZP_08426328.1| DNA replication and repair protein RecF [Lyngbya majuscula 3L] gi|332354965|gb|EGJ34437.1| DNA replication and repair protein RecF [Lyngbya majuscula 3L] Length = 383 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 94/384 (24%), Positives = 175/384 (45%), Gaps = 22/384 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ +FRNY + FDA TI +G+N GK+N+LEA+ LS + R ++ Sbjct: 1 MYLKSLHLRQFRNYRDCLVNFDAPKTILLGNNAQGKSNLLEAVELLSTLKSHRSVRDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + A +E G ++ + L T+ R + +N +R + L Sbjct: 61 V-LETTPIAEIRATLERTYGSVELGLTLRTQGR---RTVALNQESLRRQLDFLGILNAVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177 + G RR +LD ++ ++P + + + +++R RN LL EG Sbjct: 117 FSSLDLELVRGAPERRRAWLDSILTQLEPIYAYILQQYNQVLRQRNALLKKIRKLQQEGE 176 Query: 178 FDSS-------WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 D+S +AQ+A G ++ R M+ L+ L + + L +T Sbjct: 177 VDASVSKQYNAELGLWDAQLATAGSRVTRRRERMLKRLAPLAQAWHASISGKTEVLDITY 236 Query: 231 FLDGKFDQSFCAL-KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + + L K+ + +K+ + RTL+GPHR ++ ++ ++GS Sbjct: 237 APNVSLSKDDPDLVKQAFLEKIQQYSLPEFHQGRTLVGPHRDEVQFTI-NQTPAKSYGSQ 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ +++ + LA +LI G AP+LLLD++ A LD +++N L + D Q +T Sbjct: 296 GQQRTLVLALKLAELKLIEEVVGEAPLLLLDDVLAELDLNRQNLLLDAIQD-RFQTLITT 354 Query: 350 TDKSVFDS-LNETAKFMRISNHQA 372 T FDS +++ + + Q Sbjct: 355 THLGAFDSQWLNSSQILSVQAGQI 378 >gi|227485760|ref|ZP_03916076.1| possible recombination protein F [Anaerococcus lactolyticus ATCC 51172] gi|227236315|gb|EEI86330.1| possible recombination protein F [Anaerococcus lactolyticus ATCC 51172] Length = 367 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + FRNY + F+ IF+GDN GKTN+LE+ +L+ F++ D+ Sbjct: 1 MWIQDIKLYNFRNYFYESVNFNESTNIFIGDNAQGKTNLLESCYYLANATSFKKLRDKDI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + G K+ R D + + + +N+V + +L R+ Sbjct: 61 IKFGQEKM-----EISGTIRKGRSFKKVLIRVDGTDKNIFVNEVEYKRNKDLKSLFRLVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182 P I RR LD ++ +ID + R D+++++ RN+LL Sbjct: 116 FTPEDLNIIKEGPNLRRELLDEIIASIDFSYARVKKDYDKILFARNKLLKNRNSSYFKEQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + + + G KI +R++ + + ++ KL + D Sbjct: 176 LDAFDKSLVKEGYKIYKSRIKFVKFVEEYAQDFQNALTDGKEKLEIDYLPDIS-----AE 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +EY KK + R+ D T G HR D+I+ K T S G+Q+ ++ I LA Sbjct: 231 SLDEYYKKFLEKREDDLRYLSTQAGVHRDDIIIKINGKN-TRLFASQGQQRSAIINIKLA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +L+ +G ++LLD++ + LDE + L ++D Q +T T+ +++ Sbjct: 290 EVKLVRQISGDRAVILLDDVFSELDETRSKFLLENLSDY--QTIITATNTKSLENVPAD- 346 Query: 363 KFMRISNHQA 372 K IS+ + Sbjct: 347 KISYISDGRI 356 >gi|89256653|ref|YP_514015.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica LVS] gi|115315066|ref|YP_763789.1| DNA replication and repair protein RecF [Francisella tularensis subsp. holarctica OSU18] gi|156502796|ref|YP_001428861.1| DNA replication and repair protein RecF [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010539|ref|ZP_02275470.1| DNA replication and repair protein RecF [Francisella tularensis subsp. holarctica FSC200] gi|254367965|ref|ZP_04983985.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica 257] gi|254369521|ref|ZP_04985532.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica FSC022] gi|290953408|ref|ZP_06558029.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica URFT1] gi|295313369|ref|ZP_06803978.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica URFT1] gi|122324928|sp|Q0BL82|RECF_FRATO RecName: Full=DNA replication and repair protein recF gi|122500520|sp|Q2A2N7|RECF_FRATH RecName: Full=DNA replication and repair protein recF gi|259563657|sp|A7ND52|RECF_FRATF RecName: Full=DNA replication and repair protein recF gi|89144484|emb|CAJ79791.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica LVS] gi|115129965|gb|ABI83152.1| DNA replication and repair protein RecF [Francisella tularensis subsp. holarctica OSU18] gi|134253775|gb|EBA52869.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica 257] gi|156253399|gb|ABU61905.1| DNA replication and repair protein RecF [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122475|gb|EDO66610.1| DNA replication and repair protein recF [Francisella tularensis subsp. holarctica FSC022] Length = 349 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 88/361 (24%), Positives = 160/361 (44%), Gaps = 15/361 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN + F VG NG GKT+ILE+I FLS R FR + + Sbjct: 1 MYISNLRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F +I+I L R S ++N + + E+ ++L I Sbjct: 61 INHNADEFII----YTKAYNPDEITISLS-RKKNSNNISKLNLEIQKNHTEITRNLPIQL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P I + + +R + +D F +D + + L++ RN L + Y S+ Sbjct: 116 INPESFNIINSGAQQRCKVIDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNYP-YSYIL 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 SI+ ++ E ++ R L I E + N P+++L + F +S Sbjct: 175 SIDKKLCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKS----- 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A+ L + D+ + T GPH++D+++ K I S G+QK+++ + LA Sbjct: 229 --LAQVLEESFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + ++ I L+D+I++ LD LF + + SQ+F+T T+K+ + +T + Sbjct: 286 EIHNSENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSY 345 Query: 365 M 365 + Sbjct: 346 I 346 >gi|325954682|ref|YP_004238342.1| DNA replication and repair protein recF [Weeksella virosa DSM 16922] gi|323437300|gb|ADX67764.1| DNA replication and repair protein recF [Weeksella virosa DSM 16922] Length = 359 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 156/375 (41%), Gaps = 28/375 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L +F+N+ F + VG NG+GKTN+L+AI +L+ + + S A Sbjct: 1 MYLRLLKARQFKNFTESDFEFSPKINAIVGPNGLGKTNLLDAIHYLALSKSYLNHSDAMN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + F +EG + K+ + + L+ N + + + Sbjct: 61 IQFDKDYFL-----LEGEFYRNHVDEKISCLVRKGQSKQLKRNSKQYDRLSDHIGQFPVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 + P + + S RR+FLD ++ D + + ++ + +++ RN LL FD Sbjct: 116 MISPYDSDLINEGSEVRRKFLDNIISQSDKAYLQHLLRYNKVLSQRNALLKYFAANQTFD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFD 237 + + ++ ELG KI R + + + Y + +K+ L+ Sbjct: 176 ADTLGIYDKELIELGEKIFAKRKTFVEIFAKVFKSYYSSISEQREPVKIEYISQLN---- 231 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + + L + D ++ + G H+ DL + GS G+QK L+ Sbjct: 232 ------EHSFDTLLQNHLPKDRFAQHSTAGIHKDDLAFTIFHHPVK-KFGSQGQQKSYLI 284 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----K 352 + LA +I PILLLD+I LDE + L R+V + QIF+T T + Sbjct: 285 ALKLAQLEVIKQVLNLTPILLLDDIFDKLDEQRVTQLIRLVNEARFGQIFVTDTHPGRTE 344 Query: 353 SVFDSLNETAKFMRI 367 + +NE +K +RI Sbjct: 345 EIVKRINEESKIIRI 359 >gi|88798537|ref|ZP_01114121.1| recombination protein F [Reinekea sp. MED297] gi|88778637|gb|EAR09828.1| recombination protein F [Reinekea sp. MED297] Length = 364 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 77/374 (20%), Positives = 148/374 (39%), Gaps = 21/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+ RN AS RL +F GDNG GKT++LEAI L+ R F+ A V Sbjct: 1 MAVLTLSFQGIRNLASARLNLSPGVNVFYGDNGAGKTSVLEAIHLLAMARSFKLARTRTV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 T +G + + + R + +++N + + +L + + Sbjct: 61 VSHELEELLVTGELGDG----SRLGV---RRTQKGQVQIRLNGESLASLAQLVHLMPVQL 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + G +RR+FLD VF ++ ++ RN LL G + S + Sbjct: 114 IHSDSFALLEGSPGDRRQFLDWGVFHQTVAFHEDWQRLQKSLKNRNSLLRSGRIERSQLA 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKFDQSFCAL 243 E + E +I+ R + + + + Q + P +++ D Sbjct: 174 VWEREYIEAAERIDGYRKQYLEGFVPCFHDVLNQLVSLPELRIHYYRGWD---------R 224 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ + L R D T GP R+D+ + +K S G+QK+V+ + +A Sbjct: 225 QKPLNEVLEQQRDRDMKLGYTQSGPQRADMRIKV-NKVNAADELSRGQQKLVVCALKIAQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL---NE 360 + + + L+D++ A LD L ++ + SQ+FMT D + + + Sbjct: 284 SLYLQRQQNQPTVFLIDDLPAELDHHHIQRLGALMETLQSQVFMTCVDPAPLKTFWKHPD 343 Query: 361 TAKFMRISNHQALC 374 + + + + Sbjct: 344 QVRMFHVEHGEIGS 357 >gi|313792565|gb|EFS40651.1| recombination protein F [Propionibacterium acnes HL110PA1] gi|313803566|gb|EFS44748.1| recombination protein F [Propionibacterium acnes HL110PA2] gi|313839625|gb|EFS77339.1| recombination protein F [Propionibacterium acnes HL086PA1] gi|314963870|gb|EFT07970.1| recombination protein F [Propionibacterium acnes HL082PA1] gi|315078996|gb|EFT51008.1| recombination protein F [Propionibacterium acnes HL053PA2] gi|327457411|gb|EGF04066.1| recombination protein F [Propionibacterium acnes HL092PA1] Length = 401 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 164/392 (41%), Gaps = 27/392 (6%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A TIF+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMAAGATIFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 P+ + G +RR FLD +V PR D+ER+++ RN LL Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGF 231 G + + ++A +G ++ AR++ ++A+ L ++ + T Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTID 245 Query: 232 LDGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L+G + L + L R + + TL+GP R D+I+ + Sbjct: 246 LEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393 >gi|300742654|ref|ZP_07072675.1| RecF protein [Rothia dentocariosa M567] gi|300381839|gb|EFJ78401.1| RecF protein [Rothia dentocariosa M567] Length = 403 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 164/392 (41%), Gaps = 30/392 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ ++R Y L L A T+F+G NGVGKTNI+EAI + + R + + Sbjct: 1 MYLDHLSLLDYRTYPLLNLPLSAGVTVFLGPNGVGKTNIIEAIDYTANLSSHRVSHDGPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ + RV + G + E S R ++IN E R Sbjct: 61 VRVGAS---RAYIRVRTVRGSQQTVTEFEIAPGASNR-VRINRAAPVRAREALGITRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P ++ G RRRF+D + ++ P ++ER++R RN LL S Sbjct: 117 FSPEDLQLVKGEPAGRRRFIDDLAVSLRPVVAGYRQEYERILRQRNSLLKTLQRRGSLAA 176 Query: 183 --------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---- 230 Q+A+LG ++ AR ++ L + +S T Sbjct: 177 DDENAMHTLDVWSEQLAQLGAQLLAARFRVLWLLLPHLRRAYAGLTDGSKDISFTYDSTV 236 Query: 231 -------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 L+ S +K+ A++L + R + TL+GPHR D+ + A+ Sbjct: 237 FPEITERGLEHVSRMSIDDIKDAMAQRLRERRAAELERGVTLVGPHRDDITLLLGGLAVK 296 Query: 284 IAHGSTGEQKVVLVGIFLAH---ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 S GE V + + LA R ++ G +PIL+LD++ A LD ++R+ L +V Sbjct: 297 -QFASHGESWSVALSLRLASWFVHRADDDSPGSSPILILDDVFAELDSERRHRLGALVAQ 355 Query: 341 IGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 Q+ +T S T + +R+S A Sbjct: 356 AE-QVLLTSAVLSDIPEELGTYRLVRVSAAHA 386 >gi|262377661|ref|ZP_06070881.1| recombinational DNA repair ATPase [Acinetobacter lwoffii SH145] gi|262307420|gb|EEY88563.1| recombinational DNA repair ATPase [Acinetobacter lwoffii SH145] Length = 359 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 23/376 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+I RN ++ L +F G NG GKT+ILEAI L+ GR FR + Sbjct: 1 MHITRLHIERVRNLKTVALHGLQPFNVFYGQNGSGKTSILEAIHLLAAGRSFRTHIPKNY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ I ++ ++ +++N ++ +L K L + Sbjct: 61 IQHGAQDAIVFA-----QSATEKIGMQKMASGEQ---LIKVNGDLVATQGQLAKLLPLQL 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSWC 183 + P I + RR+ LD ++F ++P + R ++ RN LL F S Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYHAWQYYSRALKQRNSLLKSKRFLSLSDV 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++E G ++ RV ++ + + K+ P +++SL + Sbjct: 173 EPWNQMLSEYGEILHSQRVGIVEQWKPFFEDDL-KQLLPELQVSLEYSPGFHSETG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L + + D R T GPHR+DL + S G++K++++ + L+ Sbjct: 228 ---LLNDLTNQHEKDCERRYTEYGPHRADLRLK-TPMGDADVILSRGQKKLLMIALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS----VFDSLN 359 ++ + ++LLD+++A LD + L ++ +GSQ+F+T D L+ Sbjct: 284 IAMLH-SCNKETVVLLDDVTAELDLTAQQRLIERLSQLGSQVFITTLDHESVQKHLHDLS 342 Query: 360 ETAKFMRISNHQALCI 375 + + + N + Sbjct: 343 ISYQLFSVENGTVQVV 358 >gi|260891933|ref|YP_003238030.1| DNA replication and repair protein RecF [Ammonifex degensii KC4] gi|260864074|gb|ACX51180.1| DNA replication and repair protein RecF [Ammonifex degensii KC4] Length = 358 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 148/367 (40%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + FRNY L + + G N GKTN+LEA+ F+ GR FR ++ Sbjct: 1 MWIRSLFLRNFRNYCELEWEPSSGINLLKGPNAAGKTNLLEALYFVLCGRSFRTLREEEI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G T ++G A I+ E R + + L D + + + Sbjct: 61 VRTGE-----TTTLIKGKIATAWGEIETEVRFKKGTKLLFYQGKPASRRDFPGEKV-VLL 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + +G ERR F +R++ + P + + ++R + RN LL Sbjct: 115 FRPEDLLVVTGTPAERRGFFNRVLAKLVPGYEEVLTRYQRALEQRNALLRLPEKKGEELE 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + G + RVE + + L ++ KL L + L Sbjct: 175 IWTEALVSAGALLYRLRVEGLGLIGPLTSSLYRELVGK--KLVLRYATNAVSPAKEKPLA 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E++A+ L + + + +TL+GPHR D + + + GS GE + ++ + LA A Sbjct: 233 EQFAEALSALAEKEKVLGQTLVGPHRDDFLFIVEGEDLRYK-GSRGEVRAAVLALKLAEA 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 +L+ TG I LD++ + D +R AL + + Q F+T + L + Sbjct: 292 KLLEKMTGERTIFFLDDVFSEFDPQRRRALALYLEER--QSFVTSAEPE----LKLPGRT 345 Query: 365 MRISNHQ 371 I + Sbjct: 346 FLIEQGR 352 >gi|254818681|ref|ZP_05223682.1| recombination protein F [Mycobacterium intracellulare ATCC 13950] Length = 385 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 87/361 (24%), Positives = 149/361 (41%), Gaps = 22/361 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + Sbjct: 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + ++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGAARAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P + G ERRR+LD + P D+E+++R R LL Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAVAAVRADYEKVLRQRTALLKSLSGARYRGD 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234 + ++++AE G ++ AR+++ N L+ + + Q +S L Sbjct: 177 HSALDTLDVWDSRLAEHGAELMSARIDLANQLTPEVEKAYQLLAPGSRAASISYRSSLGA 236 Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 E+ L + R + L+GPHR DL + D+ S Sbjct: 237 DAAADIAGGDREFLEAALLAALAERRSAELERGMCLVGPHRDDLELWLGDQPAK-GFASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + LA L+ P+LLLD++ A LD +R AL V + Q+ +T Sbjct: 296 GESWSFALALRLAAYELL-RADESDPVLLLDDVFAELDATRRRALA-TVAESAEQVLVTA 353 Query: 350 T 350 Sbjct: 354 A 354 >gi|88854502|ref|ZP_01129169.1| recombination protein F [marine actinobacterium PHSC20C1] gi|88816310|gb|EAR26165.1| recombination protein F [marine actinobacterium PHSC20C1] Length = 387 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 97/394 (24%), Positives = 163/394 (41%), Gaps = 35/394 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + +++ +FRNY L L + T+ VG NG GKTN++EA+ FLS R ++ + Sbjct: 1 MLVTHVDLKDFRNYKGLTLELSSGPTLIVGSNGQGKTNLVEALGFLSTLGSHRVSTDHAM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + R+E E +++ QIN VIR EL ++ Sbjct: 61 VRQGTDAAI-VRVRLEHNERKFLAEVQINRSGAN---RAQINRSVIRT-RELPRYFSSVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------F 178 P + G RRRF+D ++ PR + D+ER+++ RN LL Sbjct: 116 FAPEDLALVRGEPSGRRRFIDDLLVLRSPRFSGVIADYERVVKQRNMLLKSARASGIRDA 175 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + S + ++ E G +I AR ++ LS + + ++ SL L Q Sbjct: 176 NLSTLDVWDERLIEFGAEIISARSALVANLSPEVAKAYERIVGADHGASLANSLSIISRQ 235 Query: 239 ----------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 S + L RK++ TL+GPHR DLI Sbjct: 236 DDAESAVATNDVGEIISVADATTAFTAALESVRKVERDRAITLVGPHRDDLIFGLNGLP- 294 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + LA A L+ + P+L+LD++ A LD+ +R L + + Sbjct: 295 ARGYASHGESWSFALSLKLASAELLRRDSAAGDPVLILDDVFAELDKSRRERLADSIANF 354 Query: 342 GSQIFMTGTDKSVFDSLNET--AKFMRISNHQAL 373 Q+ +T +V + E A + I + + Sbjct: 355 E-QVLITA---AVLGDVPERLVANVIHIQAGEVV 384 >gi|56707876|ref|YP_169772.1| DNA replication and repair protein recF [Francisella tularensis subsp. tularensis SCHU S4] gi|110670347|ref|YP_666904.1| DNA replication and repair protein recF [Francisella tularensis subsp. tularensis FSC198] gi|134301718|ref|YP_001121686.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis WY96-3418] gi|224456955|ref|ZP_03665428.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis MA00-2987] gi|254370369|ref|ZP_04986374.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis FSC033] gi|254874691|ref|ZP_05247401.1| recF, DNA replication and repair protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81597652|sp|Q5NGS0|RECF_FRATT RecName: Full=DNA replication and repair protein recF gi|123359518|sp|Q14I72|RECF_FRAT1 RecName: Full=DNA replication and repair protein recF gi|259563660|sp|A4IXB4|RECF_FRATW RecName: Full=DNA replication and repair protein recF gi|56604368|emb|CAG45395.1| DNA replication and repair protein recF [Francisella tularensis subsp. tularensis SCHU S4] gi|110320680|emb|CAL08778.1| DNA replication and repair protein recF [Francisella tularensis subsp. tularensis FSC198] gi|134049495|gb|ABO46566.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis WY96-3418] gi|151568612|gb|EDN34266.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis FSC033] gi|254840690|gb|EET19126.1| recF, DNA replication and repair protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159059|gb|ADA78450.1| DNA replication and repair protein RecF [Francisella tularensis subsp. tularensis NE061598] gi|328676814|gb|AEB27684.1| DNA recombination and repair protein RecF [Francisella cf. novicida Fx1] Length = 349 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 89/361 (24%), Positives = 160/361 (44%), Gaps = 15/361 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN + F VG NG GKT+ILE+I FLS R FR + + Sbjct: 1 MYISNLRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F +I+I L R S ++N + + E+ ++L I Sbjct: 61 INHNADEFII----YTKAYNPDEITISLS-RKKNSNNISKLNLEIQKNHTEITRNLPIQL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P I + + +R + LD F +D + + L++ RN L + Y S+ Sbjct: 116 INPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNYP-YSYIL 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 SI+ ++ E ++ R L I E + N P+++L + F +S Sbjct: 175 SIDKKLCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKS----- 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A+ L + D+ + T GPH++D+++ K I S G+QK+++ + LA Sbjct: 229 --LAQVLEESFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + ++ I L+D+I++ LD LF + + SQ+F+T T+K+ + +T + Sbjct: 286 EIHNSENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSY 345 Query: 365 M 365 + Sbjct: 346 I 346 >gi|254302376|ref|ZP_04969734.1| recombination protein F [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322568|gb|EDK87818.1| recombination protein F [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 369 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 81/368 (22%), Positives = 159/368 (43%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + FRN + + + +F G N GKT++LEAI + S G F+ +++ Sbjct: 1 MKISNITYLNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + + IS++ + + N I D K + I Sbjct: 61 IKYNFDEFISSIS-YQDYIANNKISVRF-KNIAGAKKEFFFNKKRISQTDFYGK-INIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242 E + + I R+E + +LS ++ +K + L LD + Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTVEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E K++ + + + +LIGPH+ D I+ S GE+K ++ + L+ Sbjct: 238 IQESLKKEILQKKYQEDRYKFSLIGPHKDDYKFLLNGHEAKIS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DED+R ++ Q+ ++ TDK LN A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LNIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|84497191|ref|ZP_00996013.1| recombination protein F [Janibacter sp. HTCC2649] gi|84382079|gb|EAP97961.1| recombination protein F [Janibacter sp. HTCC2649] Length = 398 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 96/402 (23%), Positives = 167/402 (41%), Gaps = 42/402 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y S L + T FVG NG GKTN++EAI +L+ R A+ A + Sbjct: 1 MYVRHLTVGDFRSYPSAELPLEPGITTFVGLNGQGKTNLVEAIGYLASLSSHRVANDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A V + ++LE R+ R ++N + ++ +R Sbjct: 61 VRFGAAQAIIRGAVVRDG---RETLVELEITPGRANRA-RLNKSPLTRTRDVLGQVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 P + G ERRRFLD ++ A PR D++R+++ RN LL Sbjct: 117 FAPEDLSLVKGDPSERRRFLDDLLVARQPRWAGARGDYDRILKQRNALLKSAAPVLRGRG 176 Query: 175 -------------EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 E AQ+A++ + AR+ ++ L+ L+ + + + Sbjct: 177 KQRRPVEGVDTVSEREAALHTLDVWNAQLAQVAAPLLYARLRLLRDLAPLLGKAYDEVSA 236 Query: 222 PH--IKLSLTGFLDGKFD--------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 ++S L +F L E + R + TL+GPHR Sbjct: 237 GQSDARVSYKASLREEFAGRIAAGEVPELEELHAELLASFAEVRGQEIERGVTLVGPHRD 296 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 D+++ + + S GE +G+ LA L+ + G P+L+LD++ A LD +R Sbjct: 297 DVVLTLGELPAK-GYASHGESWSFALGLKLAAYHLLRHDLGDDPVLILDDVFAELDAGRR 355 Query: 332 NALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372 L +V D Q+ +T + V L + +S + Sbjct: 356 ERLAAMVADCE-QVLITAAVEADVPSEL--RGRTYAVSLGEV 394 >gi|315107495|gb|EFT79471.1| recombination protein F [Propionibacterium acnes HL030PA1] Length = 401 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 163/392 (41%), Gaps = 27/392 (6%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVEHLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 P+ + G +RR FLD +V PR D+ER+++ RN LL Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGF 231 G + + ++A +G ++ AR++ ++A+ L ++ + T Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTID 245 Query: 232 LDGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L+G + L + L R + + TL+GP R D+I+ + Sbjct: 246 LEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393 >gi|260495358|ref|ZP_05815485.1| recombination protein F [Fusobacterium sp. 3_1_33] gi|260197136|gb|EEW94656.1| recombination protein F [Fusobacterium sp. 3_1_33] Length = 369 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 159/368 (43%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + FRN + + + +F G N GKT++LEAI + S G F+ +++ Sbjct: 1 MKISNITYLNFRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + + IS++ + + N I D K + I Sbjct: 61 IKYNFEEFISSIS-YQDYVANNKISVRF-KNITGAKKEFFFNKKRISQTDFYGK-INIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242 E + + I R+E + +LS ++ +K + L LD + Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTVEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E K++ + + + +L+GPH+ D I+ S GE+K ++ + L+ Sbjct: 238 IQENLKKEISQKKYQEDKYKFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DED+R ++ Q+ ++ TDK L+ A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|132249|sp|P13456|RECF_PSEPU RecName: Full=DNA replication and repair protein recF gi|45727|emb|CAA44365.1| recF protein [Pseudomonas putida] Length = 365 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 157/375 (41%), Gaps = 21/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + F V+ EG +++ + E + + ++I+ R +L + L + Sbjct: 61 IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGE---FTIRIDGQNARQA-QLAELLPLQ 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ G RR+FLD VF ++PR ++ +R RN L G D + Sbjct: 116 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ + ++ +I+ R I AL + + E L+L+ + D+ Sbjct: 176 AAWDRELCLRSAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF-LA 302 E + L D T GP R+DL + S G+QK+V G+ +A Sbjct: 230 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAGNNAADIL-SRGQQKLV--GMRIIA 284 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LN 359 L+S I L+D++ + LD+ R AL R++ ++ Q+F+T D + Sbjct: 285 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTE 344 Query: 360 ETAKFMRISNHQALC 374 + + Sbjct: 345 TPVALFHVEQGRITQ 359 >gi|157803214|ref|YP_001491763.1| recombination protein F [Rickettsia canadensis str. McKiel] gi|226737825|sp|A8EX95|RECF_RICCK RecName: Full=DNA replication and repair protein recF gi|157784477|gb|ABV72978.1| recombination protein F [Rickettsia canadensis str. McKiel] Length = 360 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 119/361 (32%), Positives = 189/361 (52%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + +RN+ +L L D I +G+NG GKTNILEAIS PGRG R A AD+ + Sbjct: 6 LHSLILENYRNFKNLELKIDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICK 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S A ++ GLA+ + + + +R R + N+ I +EL+K + WL Sbjct: 66 T-SEDHCSIKALLQSKLGLAEFTTQFKLSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ +ERR+FLDR+V+ DP+H + +E M RN++L E D +W I Sbjct: 122 PQMEGIFTSGKVERRKFLDRIVYNFDPKHAELVGKYEYYMHERNKILAEEIQDDNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA++ I + R++ + + I + FP LS+ G ++ K + Sbjct: 182 EEKMADISNHIAVNRLKTLEFMQQTINNL--ENEFPKADLSIDGIVEQKILDGEENIVSV 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 ITAELYKTRNKDKLIGRTSFGVHKSDFLVKHKKKNILAKLCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T AP+LLLDE+ HLD+ +R+ L T + Q+++T T+ ++ A+ ++ Sbjct: 300 AIKLTKIAPVLLLDEVFVHLDDKRRDYLTEFFTYLNLQLWITTTNLESIENFASKAQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|228471347|ref|ZP_04056148.1| RecF protein [Porphyromonas uenonis 60-3] gi|228306848|gb|EEK15961.1| RecF protein [Porphyromonas uenonis 60-3] Length = 372 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 155/375 (41%), Gaps = 21/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ F+N A+ F + F G NG+GKTN+L+AI +LS RG + Sbjct: 1 MILSSLSVINFKNVATANCHFAPKLNCFFGGNGMGKTNLLDAIHYLSVVRGHLGTTDRYA 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G+ + +G E + I E + L N + + + + Sbjct: 61 IRHGAQEAIIQGEYLWDDGQEDKISLRISAERS-----KQLSRNGRLYKRHSDHIGRYPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + P R+ G S ERRR +DR++ D + +I++ R + RN +L + + Sbjct: 116 VIISPHDQRLIRGGSDERRRSVDRILSQQDATYLANLINYNRALDQRNNMLRNQIHEPAL 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 +E +A G+ + R + L + Q + L+ F + Sbjct: 176 MDILEETLATTGLAVTTMRQAYVEELVPTFDQIYQHLAAGVERAVLS------FSAGSAS 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EE + L +GR+ D T G HR D + + + GS G+ K L+ LA Sbjct: 230 TAEEQLRILRNGRQRDYEYGFTATGCHRDDFEM-LLGENLMRKIGSEGQNKTYLIAYKLA 288 Query: 303 HARLISNT--TGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSLN 359 R + AP+LLLD+I LD D+ + +V TD QIF+T T++ D + Sbjct: 289 EYRYLQQHLTNQTAPLLLLDDIFDKLDSDRVERIIELVATDTFGQIFITDTNRKYLDEII 348 Query: 360 ETAKF----MRISNH 370 + + +I Sbjct: 349 SSKQVPYRLFQIQEG 363 >gi|148927274|ref|ZP_01810844.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] gi|147887333|gb|EDK72787.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] Length = 351 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 81/346 (23%), Positives = 148/346 (42%), Gaps = 13/346 (3%) Query: 9 FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68 L + +FR+Y + TI G NG GKTN+LEA+ L+ G FR AS ++ +IG Sbjct: 4 SLRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSFR-ASDQELGQIG 62 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 ++ AR+ E SI E + ++ V + + L + P Sbjct: 63 MD-WWRLDARLVANESR---SILFEAEKTTGRKTFILDGVKKQRLT-YQHKLPVVLFEPG 117 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR F+D ++ ++P + + ++R+++ RN LL + + Sbjct: 118 DLRLLHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDV 177 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++E G +I R + L++ + E + +SL F + ++++ Sbjct: 178 ALSEYGARIVAERQKYSALLNASLRERYRAIAHTKDIVSLAYS----FQEGAESVQQAMV 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L D T +GPHR DLI D + S GE + +++ + ++ Sbjct: 234 SALHAHHVRDKALGYTTVGPHRHDLIFSMND-VEATSIASRGETRSIVLALKFIEVEMLR 292 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 P+LLLD++ + LD +R AL + +Q +T T+ + Sbjct: 293 VYRDQPPLLLLDDVFSELDSTRRMALVEV--GSSTQTVITTTNADI 336 >gi|256027569|ref|ZP_05441403.1| RECF protein [Fusobacterium sp. D11] gi|289765528|ref|ZP_06524906.1| DNA replication and repair protein recF [Fusobacterium sp. D11] gi|289717083|gb|EFD81095.1| DNA replication and repair protein recF [Fusobacterium sp. D11] Length = 369 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 75/368 (20%), Positives = 159/368 (43%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + FRN + + + +F G N GKT++LEAI + S G F+ +++ Sbjct: 1 MKISNITYLNFRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + + +A+ I + ++ + + + + I Sbjct: 61 IKYNFDEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGKVNIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242 E + + I R+E + +LS ++ +K + L LD + Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTVKVTIEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E K++ + + + +L+GPH+ D I+ S GE+K ++ + L+ Sbjct: 238 IQESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DED+R ++ Q+ ++ TDK L+ A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|167754087|ref|ZP_02426214.1| hypothetical protein ALIPUT_02375 [Alistipes putredinis DSM 17216] gi|167658712|gb|EDS02842.1| hypothetical protein ALIPUT_02375 [Alistipes putredinis DSM 17216] Length = 362 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 165/374 (44%), Gaps = 18/374 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ F+N L F FVGDNG GKTN+++A+ FLS + + Sbjct: 1 MYLKKLSLINFKNIREENLEFRPGINCFVGDNGAGKTNVIDAVYFLSMCKSSLAMTDGQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FF + EG ++ + R + + L+ N + + + + Sbjct: 61 MRHGSD-FFLLDGQYLTDEGRSESVVCAFAR--KGGKTLKRNGKEYERLSDHVGLIPVVI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P+ + S + ERRR+L+ + +D + + ++ + ++ RNRLL D Sbjct: 118 VSPADTMLISDAADERRRYLNGFISQLDRAYLQALVRYNAVLGERNRLLK-ISRDEQMLC 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+ E G I+ R E+ L + Y + + +++L + Sbjct: 177 IYDRQLVEQGGIIHRKRSEIAALLEPEVARYYRHLSSDREQVTLEYRSELNDTP------ 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + + L R+ D ++ T G HR DL++ + +GS G+QK L+ + LA Sbjct: 231 --FEELLLKSREKDFVNGFTTAGIHRDDLVLHIGGYPLR-KYGSQGQQKSFLIALKLAQY 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVFDSLN 359 L++ G PILLLD++ LD + L R+V D G QIF+T + +++ D Sbjct: 288 ALVAQAKGEKPILLLDDLFDKLDAGRVEQLIRLVGDDGFGQIFITDCNPTRLRTILDKTG 347 Query: 360 ETAKFMRISNHQAL 373 + + N + Sbjct: 348 DDYSLFTVENGGIV 361 >gi|239948452|ref|ZP_04700205.1| DNA replication and repair protein RecF [Rickettsia endosymbiont of Ixodes scapularis] gi|239922728|gb|EER22752.1| DNA replication and repair protein RecF [Rickettsia endosymbiont of Ixodes scapularis] Length = 360 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 117/361 (32%), Positives = 184/361 (50%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L++ +RN+ +L L D I +G+NG GKTNILEAIS PGRG + A A Sbjct: 6 LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLKSAKLA-YIC 64 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + A ++ GLA+ + + + +R R + N+ I +EL+K + WL Sbjct: 65 KTSEDHCTVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 M+ IF+ S +RR+FLDR+V+ DP+H + +E M RN++L E D +W I Sbjct: 122 SQMEGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILAEDIRDDNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA++ I R++ + + I E + FP LS+ G ++ K + Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDGEENIVSF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T APILLLDE+ HLD+ +R L T + Q+++T TD ++ + ++ Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFFTCLNMQLWVTATDLEGIENFAGKTQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|256831258|ref|YP_003159985.1| DNA replication and repair protein RecF [Jonesia denitrificans DSM 20603] gi|256684789|gb|ACV07682.1| DNA replication and repair protein RecF [Jonesia denitrificans DSM 20603] Length = 415 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 153/391 (39%), Gaps = 39/391 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ ++R+Y + + F + VG NG GKTNI+EAI +L+ R A + Sbjct: 1 MYVSHLSLVDYRSYEHVDIEFAPGVNVLVGHNGQGKTNIVEAIGYLATLASHRVAHDTAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ V G ++LE ++ + R L ++ Sbjct: 61 IRVGAQRALIRSRVVRGDRAQV---VELELLHGKANKARVNRGQPGRASTVL-GIVKTVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GYF 178 P + G RRR+LD + + PR R + D+++++R R+ LL + + Sbjct: 117 FAPEDLVLVKGDPDARRRYLDDLTVLMIPRMRSVLADYDKVVRQRSALLKQLMRGGASHA 176 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV------QKENFPHIKLSLTGFL 232 + + + +M LG +I R ++ AL+ + Q E + SL FL Sbjct: 177 SDATLAVWDERMVALGSQIIGVRQRLVAALAPHLASGYETVSSGQSEAKMRYRPSLESFL 236 Query: 233 DGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D S + YA+ L R+ + ++GPHR D+ + + + S G Sbjct: 237 DEPMPAVMSVEEISVIYAEVLARARRRELERGVCIVGPHRDDVEQTLNNLPVK-GYASHG 295 Query: 291 EQKVVLVGIFLAHARLISN--------------------TTGFAPILLLDEISAHLDEDK 330 E + + LA RL++ PIL+LD++ A LD + Sbjct: 296 ESWSYALAMRLASYRLMTEGPDENDPASADLQDMWWTDSQEDTEPILILDDVFAELDVRR 355 Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 R L I I + V D L Sbjct: 356 RRQLADIAAQARQVIITAAVAQDVPDQLRGR 386 >gi|256846676|ref|ZP_05552132.1| DNA replication and repair protein recF [Fusobacterium sp. 3_1_36A2] gi|294784383|ref|ZP_06749674.1| RECF protein [Fusobacterium sp. 3_1_27] gi|256717896|gb|EEU31453.1| DNA replication and repair protein recF [Fusobacterium sp. 3_1_36A2] gi|294487955|gb|EFG35310.1| RECF protein [Fusobacterium sp. 3_1_27] Length = 369 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 74/368 (20%), Positives = 159/368 (43%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + FRN + + + +F G N GKT++LEAI + S G F+ +++ Sbjct: 1 MKISNITYLNFRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + + +A+ I + ++ + + + + I Sbjct: 61 IKYNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGKVNIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 118 YIPEDIILINGSPKHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242 E + + I R+E + +LS ++ +K + L LD + Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E K++ + + + +L+GPH+ D ++ S GE+K ++ + L+ Sbjct: 238 IQESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGHEAKVS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DED+R ++ Q+ ++ TDK L+ A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|15826868|ref|NP_301131.1| recombination protein F [Mycobacterium leprae TN] gi|221229346|ref|YP_002502762.1| recombination protein F [Mycobacterium leprae Br4923] gi|13432238|sp|P46391|RECF_MYCLE RecName: Full=DNA replication and repair protein recF gi|254790484|sp|B8ZTP0|RECF_MYCLB RecName: Full=DNA replication and repair protein recF gi|13092415|emb|CAC29511.1| putative DNA replication and SOS induction protein [Mycobacterium leprae] gi|219932453|emb|CAR70096.1| putative DNA replication and SOS induction protein [Mycobacterium leprae Br4923] Length = 385 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 159/379 (41%), Gaps = 23/379 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + +FR++ + L + T+F G NG GKTN++EA+ + + R + + Sbjct: 1 MYVRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + +I LE R+ R ++N ++R + E+ LR Sbjct: 61 IRAGTIRAIVSTIVVNEG---RECAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G RRR+LD + P D+++++R R LL D Sbjct: 117 FAPEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRTALLKSLAAARYRSD 176 Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLD- 233 + ++AE G ++ AR++++N L+ + + Q +S LD Sbjct: 177 QGVLDTLDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQLLAPGSRTASISYRASLDI 236 Query: 234 ----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 G L+ + L R ++ L+GPHR +L + D+ S Sbjct: 237 GGIAGVGSSDRALLQADLLAGLSTRRNVELERGICLVGPHRDELELRLGDQPAK-GFASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + + LA L+ G P+LLLD++ A LD + AL V + Q+ +T Sbjct: 296 GESWSLAIALRLAAYELL-RADGNEPVLLLDDVFAELDAARCRALA-TVAESAEQVLVTS 353 Query: 350 TDKSVFDSLNETAKFMRIS 368 + + AK++ + Sbjct: 354 AAQEDIP-VGWDAKWVTVD 371 >gi|314965766|gb|EFT09865.1| recombination protein F [Propionibacterium acnes HL082PA2] Length = 401 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 91/392 (23%), Positives = 163/392 (41%), Gaps = 27/392 (6%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 P+ + G +RR FLD +V PR D+ER+++ RN LL Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKFLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI----MEYVQKENFPHIKLSLTGF 231 G + + ++A +G ++ AR++ ++A+ LI E + T Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAIMPLISTAYHEIAPANDLTTASYKSTID 245 Query: 232 LDGKFDQ----------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L+G + L + L R + + TL+GP R D+I+ + Sbjct: 246 LEGLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393 >gi|294781813|ref|ZP_06747146.1| RECF protein [Fusobacterium sp. 1_1_41FAA] gi|294481923|gb|EFG29691.1| RECF protein [Fusobacterium sp. 1_1_41FAA] Length = 369 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 160/368 (43%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI ++ FRN + + + +F G N GKT++LEAI + S G F+ ++ Sbjct: 1 MKISNISYLNFRNLENTSIELSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTTEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + IS++ + + N I D K + I Sbjct: 61 IKYNFDEFISSIS-YSDYIANNKISVRF-KNIPGAKKEFFFNKKRISQTDFYGK-INIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + ++++L++ RN+ L E ++ + Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNTEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQSFCA 242 E + + I R+E + +LS ++ +K +L+L LD + Sbjct: 178 VYEKEFIKYASYIIFTRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTVEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E K++ + + + +L+GPH+ D I+ S GE+K ++ + L+ Sbjct: 238 IQESLQKEILQKKHQEDRYKFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DED+R ++ Q+ ++ TDK L+ A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILEFFNKRDIQVLISSTDK-----LDIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|314922681|gb|EFS86512.1| recombination protein F [Propionibacterium acnes HL001PA1] gi|314982907|gb|EFT26999.1| recombination protein F [Propionibacterium acnes HL110PA3] gi|315091213|gb|EFT63189.1| recombination protein F [Propionibacterium acnes HL110PA4] gi|315094447|gb|EFT66423.1| recombination protein F [Propionibacterium acnes HL060PA1] gi|315105167|gb|EFT77143.1| recombination protein F [Propionibacterium acnes HL050PA2] Length = 401 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 90/393 (22%), Positives = 166/393 (42%), Gaps = 29/393 (7%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 P+ + G +RR FLD +V PR D+ER+++ RN LL Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 G + + ++A +G ++ AR++ ++A+ LI +E P L+ + Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAIMPLISTAY-REIAPANDLTTASYKSTI 244 Query: 236 FDQSFCALKEE---------------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 + + ++E + L R + + TL+GP R D+I+ + Sbjct: 245 DLEGLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEM 304 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 305 PAK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362 Query: 341 IGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 363 AD-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393 >gi|118497329|ref|YP_898379.1| RecFOR complex, RecF component [Francisella tularensis subsp. novicida U112] gi|195536015|ref|ZP_03079022.1| RecF/RecN/SMC N domain protein, putative [Francisella tularensis subsp. novicida FTE] gi|208779116|ref|ZP_03246462.1| RecF/RecN/SMC N domain protein, putative [Francisella novicida FTG] gi|254372694|ref|ZP_04988183.1| RecFOR complex [Francisella tularensis subsp. novicida GA99-3549] gi|254374152|ref|ZP_04989634.1| DNA replication and repair protein recF [Francisella novicida GA99-3548] gi|259563659|sp|A0Q5W0|RECF_FRATN RecName: Full=DNA replication and repair protein recF gi|118423235|gb|ABK89625.1| RecFOR complex, RecF component [Francisella novicida U112] gi|151570421|gb|EDN36075.1| RecFOR complex [Francisella novicida GA99-3549] gi|151571872|gb|EDN37526.1| DNA replication and repair protein recF [Francisella novicida GA99-3548] gi|194372492|gb|EDX27203.1| RecF/RecN/SMC N domain protein, putative [Francisella tularensis subsp. novicida FTE] gi|208744916|gb|EDZ91214.1| RecF/RecN/SMC N domain protein, putative [Francisella novicida FTG] Length = 349 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 89/361 (24%), Positives = 160/361 (44%), Gaps = 15/361 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN + F VG NG GKT+ILE+I FLS R FR + + Sbjct: 1 MYISNLRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F +I+I L R S ++N + + E+ ++L I Sbjct: 61 INHNADEFII----YTKAYNPDEITISLS-RKKNSNNISKLNLEIQKNHTEITRNLPIQL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P I + + +R + LD F +D + + L++ RN L + Y S+ Sbjct: 116 INPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNYP-YSYIL 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 SI+ ++ E ++ R L I E + N P+++L + F +S Sbjct: 175 SIDKKLCEFAEILDYKRHAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKS----- 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A+ L + D+ + T GPH++D+++ K I S G+QK+++ + LA Sbjct: 229 --LAQVLEESFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + ++ I L+D+I++ LD LF + + SQ+F+T T+K+ + +T + Sbjct: 286 EIHNSENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSY 345 Query: 365 M 365 + Sbjct: 346 I 346 >gi|172037526|ref|YP_001804027.1| recombination protein F [Cyanothece sp. ATCC 51142] gi|254790472|sp|B1WT39|RECF_CYAA5 RecName: Full=DNA replication and repair protein recF gi|171698980|gb|ACB51961.1| DNA repair and genetic recombination protein [Cyanothece sp. ATCC 51142] Length = 380 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 88/386 (22%), Positives = 176/386 (45%), Gaps = 21/386 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ FRNY L +Q TI +G+N GK+N+LEA+ L+ + R D+ Sbjct: 1 MYLKHIHLYGFRNYHEQTLDLQSQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + A VE G +++ I + RS L +N +R + H+ Sbjct: 61 ILEGKKTG-QILAMVERTYGESELGITFRSPGRRS---LMLNHENLRRHLDFLGHINAVE 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 + G RR +LD ++ ++P + + + +++R RN LL Sbjct: 117 FSCLDLDLVRGSPETRRSWLDTLLIQLEPVYASIIHQYYKILRQRNALLKVIRKTVEEQE 176 Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 + S + Q+AE G ++ R +I ++ L ++ Q+ + L++ Sbjct: 177 NSSNLSAELSQLKVWDQQLAEAGTRVTRRRYRVIERITPLAQKWHQEISSGTEILAINYL 236 Query: 232 LDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + K + + +++ + K+ R + T++GPHR D+ + + ++GS G Sbjct: 237 PNIKIENEDPQQVQQAFLDKIEQRRMAEQQLATTVVGPHRDDVEFNI-NHTPAKSYGSQG 295 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ +++ I LA +LI G P+LLLD++ A LD +++N L ++ Q +T T Sbjct: 296 QQRTLVLAIKLAELQLIEEVIGEPPLLLLDDVLAELDPNRQNQLLEVIQG-RFQTLITTT 354 Query: 351 DKSVFDS-LNETAKFMRISNHQALCI 375 FD+ +++ M++ + + Sbjct: 355 YLHSFDAQWLNSSQIMKVEGGKIAQL 380 >gi|237738563|ref|ZP_04569044.1| DNA replication and repair protein recF [Fusobacterium sp. 2_1_31] gi|229424046|gb|EEO39093.1| DNA replication and repair protein recF [Fusobacterium sp. 2_1_31] Length = 369 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 80/368 (21%), Positives = 161/368 (43%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI ++ FRN + + + +F G N GKT++LEAI + S G F+ A++ Sbjct: 1 MKISNISYLNFRNLENTSVELSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTAEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + IS++ + + N I D K + I Sbjct: 61 IKYNFDEFISSIS-YSDYIANNKISVRF-KNIPGAKKEFFFNKKRISQTDFYGK-INIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + ++++L++ RN+ L E ++ + Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNTEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQSFCA 242 E + + I R+E + +LS ++ +K +L+L LD + Sbjct: 178 IYEKEFIKYASYIIFRRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTVEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E K++ + + + +L+GPH+ D I+ S GE+K ++ + L+ Sbjct: 238 IQESLQKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DED+R ++ Q+ ++ TDK L+ A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILEFFNKRDIQVLISSTDK-----LDIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|295129533|ref|YP_003580196.1| DNA recombination and repair protein RecF [Propionibacterium acnes SK137] gi|291377073|gb|ADE00928.1| DNA recombination and repair protein RecF [Propionibacterium acnes SK137] gi|313771063|gb|EFS37029.1| recombination protein F [Propionibacterium acnes HL074PA1] gi|313806859|gb|EFS45357.1| recombination protein F [Propionibacterium acnes HL087PA2] gi|313811772|gb|EFS49486.1| recombination protein F [Propionibacterium acnes HL083PA1] gi|313814218|gb|EFS51932.1| recombination protein F [Propionibacterium acnes HL025PA1] gi|313817646|gb|EFS55360.1| recombination protein F [Propionibacterium acnes HL046PA2] gi|313821529|gb|EFS59243.1| recombination protein F [Propionibacterium acnes HL036PA1] gi|313824527|gb|EFS62241.1| recombination protein F [Propionibacterium acnes HL036PA2] gi|313826196|gb|EFS63910.1| recombination protein F [Propionibacterium acnes HL063PA1] gi|313832306|gb|EFS70020.1| recombination protein F [Propionibacterium acnes HL007PA1] gi|313832766|gb|EFS70480.1| recombination protein F [Propionibacterium acnes HL056PA1] gi|314926330|gb|EFS90161.1| recombination protein F [Propionibacterium acnes HL036PA3] gi|314961666|gb|EFT05767.1| recombination protein F [Propionibacterium acnes HL002PA2] gi|314969080|gb|EFT13178.1| recombination protein F [Propionibacterium acnes HL037PA1] gi|314975201|gb|EFT19296.1| recombination protein F [Propionibacterium acnes HL053PA1] gi|314977614|gb|EFT21709.1| recombination protein F [Propionibacterium acnes HL045PA1] gi|314980254|gb|EFT24348.1| recombination protein F [Propionibacterium acnes HL072PA2] gi|314985200|gb|EFT29292.1| recombination protein F [Propionibacterium acnes HL005PA1] gi|315081494|gb|EFT53470.1| recombination protein F [Propionibacterium acnes HL078PA1] gi|315083083|gb|EFT55059.1| recombination protein F [Propionibacterium acnes HL027PA2] gi|315086616|gb|EFT58592.1| recombination protein F [Propionibacterium acnes HL002PA3] gi|315088018|gb|EFT59994.1| recombination protein F [Propionibacterium acnes HL072PA1] gi|315097159|gb|EFT69135.1| recombination protein F [Propionibacterium acnes HL038PA1] gi|315109863|gb|EFT81839.1| recombination protein F [Propionibacterium acnes HL030PA2] gi|327332503|gb|EGE74238.1| RecF protein [Propionibacterium acnes HL096PA2] gi|327333676|gb|EGE75393.1| RecF protein [Propionibacterium acnes HL096PA3] gi|327444466|gb|EGE91120.1| recombination protein F [Propionibacterium acnes HL013PA2] gi|327446720|gb|EGE93374.1| recombination protein F [Propionibacterium acnes HL043PA2] gi|327448838|gb|EGE95492.1| recombination protein F [Propionibacterium acnes HL043PA1] gi|328757973|gb|EGF71589.1| recombination protein F [Propionibacterium acnes HL020PA1] gi|328759814|gb|EGF73405.1| RecF protein [Propionibacterium acnes HL099PA1] Length = 401 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 163/392 (41%), Gaps = 27/392 (6%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 P+ + G +RR FLD +V PR D+ER+++ RN LL Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGF 231 G + + ++A +G ++ AR++ ++A+ L ++ + T Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTID 245 Query: 232 LDGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L+G + L + L R + + TL+GP R D+I+ + Sbjct: 246 LEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393 >gi|237743162|ref|ZP_04573643.1| DNA replication and repair protein recF [Fusobacterium sp. 7_1] gi|229433458|gb|EEO43670.1| DNA replication and repair protein recF [Fusobacterium sp. 7_1] Length = 369 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 80/368 (21%), Positives = 159/368 (43%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + FRN + + + +F G N GKT++LEAI + S G F+ +++ Sbjct: 1 MKISNITYLNFRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + + IS++ + + N I D K + I Sbjct: 61 IKYNFEEFISSIS-YQDYIASNKISVRF-KNITGAKKEFFFNKKRISQTDFYGK-VNIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + D+++L++ RN+ L E +S + Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKDYDKLLKIRNKYLKENKRNSEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242 E + + I R+E + +LS ++ +K + L LD + Sbjct: 178 IYEREFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTIEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E K++ + + + +L+GPH+ D I+ S GE+K ++ + L+ Sbjct: 238 IQESLKKEISQKKYQEDKYKFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DED+R ++ Q+ ++ TDK L+ A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|193214559|ref|YP_001995758.1| DNA replication and repair protein RecF [Chloroherpeton thalassium ATCC 35110] gi|226737776|sp|B3QWU7|RECF_CHLT3 RecName: Full=DNA replication and repair protein recF gi|193088036|gb|ACF13311.1| DNA replication and repair protein RecF [Chloroherpeton thalassium ATCC 35110] Length = 368 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 11/364 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L+I FR++ + + G NG GKTN+LEAI + + F S +D Sbjct: 1 MKLFKLSIHGFRSHQDAVFLPHDGINLIYGKNGTGKTNLLEAIHYTCLTKSFLSTSDSDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F E + + + + + + IN + ++ Sbjct: 61 LHFQAGHFELEAVLQSDSENESKVRVYYSPAEG---KHVFINKTPLESFSKIVGEFPCVA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSS 181 L P + G ERRRFLD + + + ++ + R++ RN+LL F S Sbjct: 118 LSPYDIALTQGSPQERRRFLDASISQTNKAYLADLLSYRRVLAQRNKLLADMKHRTFSSP 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238 A ++ L I R+ + + + LT + ++ Sbjct: 178 ELDVWTASLSALAASIIFRRIHFVRDFAQYLENAYADFQSIDETPGLTYKTELSLNENSF 237 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S L ++ ++K + + + TL GPHR DL + ++ + S G+ K ++ Sbjct: 238 SEAELAKQISEKFEEMKFDELRRGLTLFGPHRDDLAFSINNLSLR-KYASQGQHKTFVIC 296 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDS 357 + LA I PI LLD++ + LD + L RI++ Q F+T T++ F Sbjct: 297 LKLAQYFYICELLSEKPIFLLDDVFSELDSQRAEELVRILSSKRSGQSFITTTERKDFAE 356 Query: 358 LNET 361 + + Sbjct: 357 VKQH 360 >gi|187931536|ref|YP_001891520.1| RecFOR complex, RecF component [Francisella tularensis subsp. mediasiatica FSC147] gi|259563658|sp|B2SG84|RECF_FRATM RecName: Full=DNA replication and repair protein recF gi|187712445|gb|ACD30742.1| RecFOR complex, RecF component [Francisella tularensis subsp. mediasiatica FSC147] Length = 349 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 89/361 (24%), Positives = 160/361 (44%), Gaps = 15/361 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN + F VG NG GKT+ILE+I FLS R FR + + Sbjct: 1 MYISNLRLQNFRNIHAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F +I+I L R S ++N + + E+ ++L I Sbjct: 61 INHNADEFII----YTKAYNPDEITISLS-RKKNSNNISKLNLEIQKNHTEITRNLPIQL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P I + + +R + LD F +D + + L++ RN L + Y S+ Sbjct: 116 INPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNYP-YSYIL 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 SI+ ++ E ++ R L I E + N P+++L + F +S Sbjct: 175 SIDKKLCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKS----- 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A+ L + D+ + T GPH++D+++ K I S G+QK+++ + LA Sbjct: 229 --LAQVLEESFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + ++ I L+D+I++ LD LF + + SQ+F+T T+K+ + +T + Sbjct: 286 EIHNSENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSY 345 Query: 365 M 365 + Sbjct: 346 I 346 >gi|78185894|ref|YP_373937.1| RecF protein [Chlorobium luteolum DSM 273] gi|123730146|sp|Q3B6Y7|RECF_PELLD RecName: Full=DNA replication and repair protein recF gi|78165796|gb|ABB22894.1| RecF protein [Chlorobium luteolum DSM 273] Length = 369 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 88/359 (24%), Positives = 160/359 (44%), Gaps = 11/359 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++K + + FRN+ SL + T+ G NG GKT++LEAI + + + A ++ Sbjct: 1 MRLKNIQVENFRNHHSLAFQPEEGITVLYGPNGSGKTSVLEAIHYCALTKSLLGAPESEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F + V +S+K+ DR + +Q+N ++ + + Sbjct: 61 LAFSEEYFIISGEFVSTRG--TSLSVKVSYGKDRG-KLVQLNQSEVKPFSQHVGTIPCIT 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 PS I +G ERRRFLD + D R+ ++D+ R+++ RN LL + Sbjct: 118 FSPSEIAIVNGSPGERRRFLDNALSQSDRRYLDELLDYRRVLQQRNALLLQLASSSGGSR 177 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +A+L + + R+ + LS L G D Sbjct: 178 EMLDLWTENLADLAAGVTLRRISFLGELSVYFEPLQTSLAGKGSHLVTYRSSFGTIDSGL 237 Query: 241 C--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L++ Y K+ + ++ + + +T+ GPHR DL+ + I +GS G+Q+ L+ Sbjct: 238 SRDELRDRYIKRFKETQRQELLRTQTMSGPHRDDLLFLSNGREIK-KYGSQGQQRAFLIS 296 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA R S+ +PI L D++ + LD ++ + +F I+ D G Q +T TD S+ + Sbjct: 297 LKLALFRYFSHRLPESPICLFDDMFSELDAERTSEIFNILEDCG-QTILTTTDGSLHPA 354 >gi|283768638|ref|ZP_06341550.1| putative recombination protein F [Bulleidia extructa W1219] gi|283105030|gb|EFC06402.1| putative recombination protein F [Bulleidia extructa W1219] Length = 359 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 164/369 (44%), Gaps = 13/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L +S +RNY L++ F + VG N GKTN++EA+ +LS R FR + Sbjct: 1 MYIKSLELSHYRNYHHLQVSFQPYLNVIVGKNAQGKTNLIEALYYLSLCRSFRTNQDQAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + ++E + + + L + L I + I E L + Sbjct: 61 IQK-EEKYANLACQIEERKQESYLRCILHGNG----KSLFIGKINISKTSEFIGRLNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P +FS RR+F+D+ + + ++ + ++ L++ RN LL + D + Sbjct: 116 FSPEDIYLFSQAPKARRKFMDQELMKLSKKYLFHLTRYQILLKERNMLLRKTKIDETMLD 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++ QM E V+I R+ + ++ I Q + + L + + + K Sbjct: 176 ILDQQMVESEVEILKRRISFLQFINQKIESLFQSISGMPLNLKIEIKQGIEVKKIE---K 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +E + RK D +R T +G HR D+ K I ++ S G++++V++ L Sbjct: 233 KELVEAHLSSRKRDIETRITNVGIHRGDIQFLLDGKDILLS-ASQGQKRLVMIAFKLTIL 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 R I + I+LLD++ + LD +++ L V + Q F+T T + DSL E Sbjct: 292 RYIEFISKRKAIVLLDDVLSELDLERQKRLIHAVKN-DYQCFITATH--LPDSLKLEQTN 348 Query: 364 FMRISNHQA 372 + I + + Sbjct: 349 CISIEDGKI 357 >gi|332667472|ref|YP_004450260.1| DNA replication and repair protein recF [Haliscomenobacter hydrossis DSM 1100] gi|332336286|gb|AEE53387.1| DNA replication and repair protein recF [Haliscomenobacter hydrossis DSM 1100] Length = 365 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 164/378 (43%), Gaps = 24/378 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ F+NY + +L + VG+NG+GKTN+L+AI +L + + + Sbjct: 1 MYLERIALANFKNYENQKLDCSPRLNCLVGNNGMGKTNLLDAIYYLCMAKSHFNLTDNAI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRIS 123 R F R+EG L K+ + R ++ L+ NDV + E L + Sbjct: 61 ARHHE-----AFFRLEGHFVLHGKKEKIVAKVMPRKLKELERNDVAYAKLAEHIGLLPVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 ++ P ++ S ERRRFLD + +D R+ +I + +++ RN LL + Sbjct: 116 FIGPDDIQLIREGSEERRRFLDNTLSQLDQRYLYELIAYNKVLHQRNALLKNLAERSGGN 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S + Q+ + + + R + +++ Q + ++ LT Sbjct: 176 LSLLDVYDEQLIDPALYVLEQRAKFAQKFTAIFQSTHQYISGRGEEVQLTY--------E 227 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L+ + L + R+ D +RT G HR DL+ + + GS G+ K L+ + Sbjct: 228 SQLLENDLGDLLANSRQRDLALQRTTKGIHRDDLVFSLGEHPLK-KFGSQGQLKSFLLAL 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358 LA ++ PILLLD++ LD + L R++T+ QIF+T T ++ + Sbjct: 287 KLAQYEMLRQNKAVPPILLLDDLFDKLDAQRVTHLLRLLTEGQFGQIFITDTHETRIAEI 346 Query: 359 ----NETAKFMRISNHQA 372 + + + + Sbjct: 347 VAQFGVEYRRFVVEDGKI 364 >gi|237741010|ref|ZP_04571491.1| DNA replication and repair protein recF [Fusobacterium sp. 4_1_13] gi|229431054|gb|EEO41266.1| DNA replication and repair protein recF [Fusobacterium sp. 4_1_13] Length = 369 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 74/368 (20%), Positives = 158/368 (42%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + FRN + + + +F G N GKT++LEAI + S G F+ +++ Sbjct: 1 MKISNITYLNFRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + + +A+ I + ++ + + + + I Sbjct: 61 IKYNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGKVNIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 118 YIPEDIILINGSPKHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242 E + + I R+E + +LS ++ +K + L LD + Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E K++ + + + +L+GPH+ D + S GE+K ++ + L+ Sbjct: 238 IQESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGHEAKFS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DED+R ++ Q+ ++ TDK L+ A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|314987109|gb|EFT31201.1| recombination protein F [Propionibacterium acnes HL005PA2] gi|314990689|gb|EFT34780.1| recombination protein F [Propionibacterium acnes HL005PA3] Length = 401 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 163/392 (41%), Gaps = 27/392 (6%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVCADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 P+ + G +RR FLD +V PR D+ER+++ RN LL Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGF 231 G + + ++A +G ++ AR++ ++A+ L ++ + T Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTID 245 Query: 232 LDGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L+G + L + L R + + TL+GP R D+I+ + Sbjct: 246 LEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393 >gi|227498786|ref|ZP_03928926.1| recombination protein F [Acidaminococcus sp. D21] gi|226904238|gb|EEH90156.1| recombination protein F [Acidaminococcus sp. D21] Length = 377 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 75/371 (20%), Positives = 142/371 (38%), Gaps = 16/371 (4%) Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70 + FRNY L + T+ G N GKTN+LE + + + G FR ++ + G Sbjct: 2 RLHHFRNYGDLTMNLSHDLTVIYGRNAQGKTNLLEGLYYAAMGFSFRSRHDEELVKFGET 61 Query: 71 SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130 + + G + +K R+ + Q N I E L + P Sbjct: 62 DCAAEVTYCD-RYGENRLLVKRIQEGKRTRKQAQRNGTPI-SPKEHYGSLNLVLFTPDDL 119 Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSI 186 ++ G RRRFLD + + + ++ R+++ RNR L + D Sbjct: 120 QLVKGDPSLRRRFLDMEIAQTSRFYYEALQNYNRVLQQRNRFLRHCRDQEKLDEGQLFVW 179 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-------S 239 + ++ I R++ + + K++L+ + S Sbjct: 180 DEALSRSAAVIVFERLKAMEEIERAAGLVYGTITQDREKMTLSYLQKRSDGEGVPPKGLS 239 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + Y ++L ++D + T +GPHR DL + + + + GS G+Q+ + + Sbjct: 240 LSEWQAFYQEELKKRHRLDYVRGYTSMGPHRDDLEILQEGRPLR-SFGSQGQQRTAALAL 298 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L+ I ++ PILLLD++ + LDE +R L + Q +T + + Sbjct: 299 KLSELEFIFHSKEEYPILLLDDVLSELDEGRRRMLLDGMGGK-VQTLLT-VNDRALARSS 356 Query: 360 ETAKFMRISNH 370 F + + Sbjct: 357 GDVVFYEVRSG 367 >gi|83814830|ref|YP_444220.1| DNA replication and repair protein RecF [Salinibacter ruber DSM 13855] gi|97180944|sp|Q2S6G1|RECF_SALRD RecName: Full=DNA replication and repair protein recF gi|83756224|gb|ABC44337.1| DNA replication and repair protein RecF [Salinibacter ruber DSM 13855] Length = 412 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 76/379 (20%), Positives = 155/379 (40%), Gaps = 16/379 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR +A + G NG GKTN+LEA+ +L + F + Sbjct: 1 MILHTLRLRSFRAHAESEFDLAPSINLLYGANGAGKTNVLEAVHYLCLTKSFTASRDRYA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +P +F R+ G ++++L + + +N + + ++ L + Sbjct: 61 VRKDAP-YFEIEGRI-GQVREEPMTVRLAYVPGEG-KSIFVNGAELDRLADIVGTLPVVV 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEGYFD 179 P + +G ERRRF++ ++ + ++ + R R RN +L Sbjct: 118 FSPEDYDLTAGGPSERRRFVNNILSQARSVYMETLMKYRRARRQRNEVLRSYKKRSAPPP 177 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK--LSLTGFLDGKFD 237 + ++ LG +I R + + A + + E ++ + + + D D Sbjct: 178 DELLAPWTEKLVGLGSRIVHRRQQFLQAFADDLEEAYRRIDAVAERPTIEYDTIADLAPD 237 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + A+++E+ L + + TL+GP R +L+ D + +GS G+ + + Sbjct: 238 ATPDAIEDEFRAALARKQGQERDRGTTLVGPQRDELVFRLDDLEVR-RYGSQGQHRTFAM 296 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFD 356 + LA + P+LLLD+ LD ++ ++ +D Q +T T + F Sbjct: 297 ALKLAQYFYLQQRNDTEPLLLLDDAFGKLDAERTGVFLDLLRSDAVGQSLVTATRRGPF- 355 Query: 357 SLNETAKFMRISNHQALCI 375 E A ++H+AL + Sbjct: 356 ---EPALNAEPASHRALQV 371 >gi|257470422|ref|ZP_05634513.1| RECF protein [Fusobacterium ulcerans ATCC 49185] gi|317064630|ref|ZP_07929115.1| DNA replication and repair protein recF [Fusobacterium ulcerans ATCC 49185] gi|313690306|gb|EFS27141.1| DNA replication and repair protein recF [Fusobacterium ulcerans ATCC 49185] Length = 375 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 72/370 (19%), Positives = 157/370 (42%), Gaps = 13/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I +N FRN + F + +F G NG GKT++LEA+ F S G+ FR +++ Sbjct: 1 MEILEINYVNFRNLQDGNVKFFPKLNLFYGKNGQGKTSLLEALYFNSTGKSFRTNKSSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + + G +++K D + N + DE L + Sbjct: 61 MKYGYKR-TGVYVVYKDNIGEKTLTVKFNNEDKKE---YSYNGKKV-QYDEFYGKLNVVT 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + + + + +F ++++ RN+ L E + Sbjct: 116 YIPEDIVLITGSPSVRRNFFDGEIAQTSSEYFQELKNFNKILKIRNKYLKEKKHKEPEFA 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQSFCA 242 + + + G K+ R+E + +S ++ +K +LSL L + Sbjct: 176 IYQDEFVKYGAKVIEKRMEYVKKISIILNLNYRKLFDDKKELSLQYQCHLGNVKKMTLKE 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ K++ + + +L GP + D + + S GE+K ++ + L+ Sbjct: 236 IEDALRKRIEEKLGQELRYGFSLSGPQKDDFLFFLNSYEAK-STASQGEKKSIIFSLKLS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++ +PIL++D+IS++ D ++++++ + Q+F++ T D+ Sbjct: 295 EIDMVLREKKESPILIIDDISSYFDSNRKDSILNYLEKRNIQVFISSTGGLGIDT----- 349 Query: 363 KFMRISNHQA 372 K + + Sbjct: 350 KDFYVEKGEI 359 >gi|86156433|ref|YP_463218.1| DNA replication and repair protein RecF [Anaeromyxobacter dehalogenans 2CP-C] gi|97180309|sp|Q2ILU8|RECF_ANADE RecName: Full=DNA replication and repair protein recF gi|85772944|gb|ABC79781.1| DNA replication and repair protein RecF [Anaeromyxobacter dehalogenans 2CP-C] Length = 372 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 84/370 (22%), Positives = 161/370 (43%), Gaps = 9/370 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L++ +FRN A++ L + T+ +G+NG GKTN+LEAI FL+ + R A++ Sbjct: 1 MKLLSLHVQDFRNLAAVELAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + EG G+ +++++ + + R +D+ + L Sbjct: 61 VRF-GAADAAVAGDFEGPGGVRRVAVQVAAGGRTASLDGKALGSGAR-LDDYFEGLASVC 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + RRRFLDR F P ++ R +R RN L G + + Sbjct: 119 FSPDDLLLVKAGPDGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRSGTAEVE--A 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFC 241 S + G ++ + R +++ L+ + + + P L+ + Sbjct: 177 SFREPLVRAGARLLVRRRDLVAELAPRLRAAFAEISGPAAPEADLAYRAAGGVEVGHPEA 236 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + A+ L + D T GPH DL++ K + +GS G+Q+ +++ + + Sbjct: 237 EVAARLARALETRLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLALKI 295 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360 A + G P+LLLD++S+ LD K L + + +Q F+T TD+ + + + Sbjct: 296 AEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTTTDRRLIEPAAGP 355 Query: 361 TAKFMRISNH 370 F + + Sbjct: 356 DTAFYEVRSG 365 >gi|71280559|ref|YP_266785.1| DNA replication and repair protein RecF [Colwellia psychrerythraea 34H] gi|123634297|sp|Q48AS5|RECF_COLP3 RecName: Full=DNA replication and repair protein recF gi|71146299|gb|AAZ26772.1| DNA replication and repair protein RecF [Colwellia psychrerythraea 34H] Length = 377 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 164/384 (42%), Gaps = 27/384 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L FRN +S+ + + F+G+NG GK+++LEA+ FL G+ FR + + Sbjct: 1 MSVARLTTYNFRNLSSVAIDLHPKLNFFIGNNGSGKSSLLEALFFLGHGKSFRTSKVEHL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +F + V D+ + L V ++IN + EL K++ + Sbjct: 61 ACYETDNFVVSIKDVN------DLQLGLSKNLQTGVTLIKINGERHARLSELAKNIAVQI 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P ++F G ERRRF++ +F + ++ +F R+++ RN + D + Sbjct: 115 VTPESFKLFFGGPKERRRFIELGMFHVKHDSSKQWREFNRVLKQRNACIRH-NLDKATFD 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +L ++ R + I L S + Y + P+I +T + Q K Sbjct: 174 YWTGLFCQLSEQVAEVRSQYITNLISEL-PYWLEILLPNIADKVTVQYLQGWPQ-----K 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L D + + ++ G H+ D+ K + S G+QK+ L+ + A A Sbjct: 228 KNLMDSLNDSHEREQAFGYSIYGAHKFDVKFLIA-KQALESQLSRGQQKLFLLALTFAQA 286 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE---- 360 +LI+ PILL+D+I A LD + R +L + ++ + Q+ +T ++ V + Sbjct: 287 KLIARVNRVKPILLIDDIGAELDINSRESLSQALSILDCQVIITAIEEGVLQPFIDDVSV 346 Query: 361 ---------TAKFMRISNHQALCI 375 + + L + Sbjct: 347 ADKESSKKTKYHMFHVKHGGILPV 370 >gi|317120852|ref|YP_004100855.1| DNA replication and repair protein RecF [Thermaerobacter marianensis DSM 12885] gi|315590832|gb|ADU50128.1| DNA replication and repair protein RecF [Thermaerobacter marianensis DSM 12885] Length = 400 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 163/379 (43%), Gaps = 32/379 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +FR+Y L + T+ VG NG+GKTN+LEAI F + GR R + AD+ Sbjct: 1 MVIRRVVLRQFRSYERATLELEPGLTLLVGPNGIGKTNLLEAIHFAATGRSPRTSRDADL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G P + RVE + +A + L+++ R V +L+ L + + Sbjct: 61 IRNGEP---VCYVRVEWDDPVAGRRAVEMAYHREQGKALRLDGRKRRRVADLHGALPVVY 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P + RR +LDR++ + P + + D++R++ RN+LL E G +S Sbjct: 118 FAPESLALVKAGPAARRDYLDRLLVQVVPGYGPLLHDYQRVLAQRNQLLREIRAGRAAAS 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGK 235 + + + G + R +++ L+ L+ + +KL DG Sbjct: 178 LLAIWDEPLLRHGTALRRHRQALLDELAPLVAAAAARVEAGGAVGPGEVKLGYLAG-DGP 236 Query: 236 FDQSFCALKEEYAKK-----------------LFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 D + +EE + L + + TL GP R D + Sbjct: 237 GDAAHEPGREEPSGAPEEAGDPGQRAAGVPPSLAAWHREEIARGTTLWGPQRDDFAI-LL 295 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 D A S G+Q+ + + + LA LI G P+LLLD++ + LD +R L V Sbjct: 296 DGRDARAFASQGQQRALALALTLAEVHLIHRRLGRWPVLLLDDVLSELDARRRRHLLETV 355 Query: 339 TDIGSQIFMTGTDKSVFDS 357 + Q+ +T TD+ + Sbjct: 356 AGLP-QVIVTATDEPAWPE 373 >gi|126657418|ref|ZP_01728577.1| recombination protein F [Cyanothece sp. CCY0110] gi|126621405|gb|EAZ92117.1| recombination protein F [Cyanothece sp. CCY0110] Length = 380 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 178/386 (46%), Gaps = 21/386 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ FRNY L +Q TI +G+N GK+N+LEA+ L+ + R D+ Sbjct: 1 MYLKNIHLYTFRNYEEQSLNLQSQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + VE G +++ I L + RS L +N +R E H+ Sbjct: 61 ILEGERTG-QILGTVERKYGESELGITLRYQGRRS---LTLNHENLRRHLEFLGHINAVE 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 + G RR +LD ++ ++P + + + +++R RN LL Sbjct: 117 FSCLDLDLVRGSPDTRRSWLDTLLIQLEPVYASIIHQYYKILRQRNALLKVIRKTIEEQE 176 Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 + S + Q+AE G ++ R +I ++ L ++ Q+ + +L + Sbjct: 177 NPSNLSAEISQLKVWDQQLAEAGTRVTRRRYRVIERITPLAQKWHQEISSGTERLEINYL 236 Query: 232 LDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + K + + +++ + K+ R + T++GPHR D+ + ++ ++GS G Sbjct: 237 PNIKIENEQPQQVQQAFLDKIEQRRMAEQQLATTVVGPHRDDVEFNI-NQTPAKSYGSQG 295 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ +++ I LA +LI + G P+LLLD++ A LD +++N L ++ Q +T T Sbjct: 296 QQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDPNRQNKLLEVIQG-RFQTLITTT 354 Query: 351 DKSVFDS-LNETAKFMRISNHQALCI 375 FD+ +++ M++ + + Sbjct: 355 YLHSFDAQWLNSSQIMKVEGGKIAQL 380 >gi|313765023|gb|EFS36387.1| recombination protein F [Propionibacterium acnes HL013PA1] gi|313815420|gb|EFS53134.1| recombination protein F [Propionibacterium acnes HL059PA1] gi|314916216|gb|EFS80047.1| recombination protein F [Propionibacterium acnes HL005PA4] gi|314917483|gb|EFS81314.1| recombination protein F [Propionibacterium acnes HL050PA1] gi|314921819|gb|EFS85650.1| recombination protein F [Propionibacterium acnes HL050PA3] gi|314930916|gb|EFS94747.1| recombination protein F [Propionibacterium acnes HL067PA1] gi|314955288|gb|EFS99693.1| recombination protein F [Propionibacterium acnes HL027PA1] gi|314959161|gb|EFT03263.1| recombination protein F [Propionibacterium acnes HL002PA1] gi|315099339|gb|EFT71315.1| recombination protein F [Propionibacterium acnes HL059PA2] gi|315102320|gb|EFT74296.1| recombination protein F [Propionibacterium acnes HL046PA1] gi|327454255|gb|EGF00910.1| recombination protein F [Propionibacterium acnes HL087PA3] gi|327456315|gb|EGF02970.1| recombination protein F [Propionibacterium acnes HL083PA2] gi|328756013|gb|EGF69629.1| recombination protein F [Propionibacterium acnes HL087PA1] gi|328758856|gb|EGF72472.1| recombination protein F [Propionibacterium acnes HL025PA2] Length = 401 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 162/392 (41%), Gaps = 27/392 (6%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 P+ + G +RR FLD +V PR D+ R+++ RN LL Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYARVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGF 231 G + + ++A +G ++ AR++ ++A+ L ++ + T Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTID 245 Query: 232 LDGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L+G + L + L R + + TL+GP R D+I+ + Sbjct: 246 LEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393 >gi|19705418|ref|NP_602913.1| RECF protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713411|gb|AAL94212.1| RECF protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 369 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 78/368 (21%), Positives = 160/368 (43%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI ++ FRN + + + +F G N GKT++LEAI + S G F+ +++ Sbjct: 1 MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + + IS++ + + N I D K + I Sbjct: 61 IKYNFDEFISSIS-YQDYIANNKISVRF-KNIAGAKKEFFFNKKRISQTDFYGK-INIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 118 YIPEDIILINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNSEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242 E + + I R+E + +LS ++ +K + L LD + Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKVTIEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E +++ + + + +L+GPH+ D I+ S GE+K ++ + L+ Sbjct: 238 IQESLKREISQKKYQEDKYKFSLVGPHKDDYKFLLNGHEAKIS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DED+R ++ Q+ ++ TDK L+ A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|166709898|ref|ZP_02241105.1| recombination protein F [Xanthomonas oryzae pv. oryzicola BLS256] Length = 365 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 144/367 (39%), Gaps = 13/367 (3%) Query: 9 FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68 L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + + G Sbjct: 2 RLSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQG 61 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + + EG + + + R +++ + + L L + P Sbjct: 62 ANNLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCSALAVVTFEPG 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 + SG RRRFLD +F ++P + R ++ RN LL +G + + Sbjct: 122 SHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQG-AQPRMLDAWDH 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++AE G + R+ + L ++ P + LS F G A Sbjct: 181 ELAESGETLTSRRMRYLERLQDRLIPVADAI-APTLGLSALTFAPGWKRHEVS-----LA 234 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L R D + T GPHR+D + + A S G+ K+ + LA A + Sbjct: 235 DALLLARDRDRQNGYTSQGPHRADWMPHFDVLPGKDAL-SRGQAKLTALACLLAQAEDFA 293 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF---M 365 P++ LD++ + LD + + + +Q+ +T T+ + L + Sbjct: 294 FERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQVLITATE--IPPGLADAGALLHQF 351 Query: 366 RISNHQA 372 + + Q Sbjct: 352 HVEHGQI 358 >gi|296328804|ref|ZP_06871318.1| DNA replication and repair protein RecF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154139|gb|EFG94943.1| DNA replication and repair protein RecF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 369 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 78/368 (21%), Positives = 160/368 (43%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI ++ FRN + + + +F G N GKT++LEAI + S G F+ +++ Sbjct: 1 MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + + IS++ + + N I D K + I Sbjct: 61 IKYNFDEFISSIS-YQDYIANNKISVRF-KNIAGAKKEFFFNKKRISQTDFYGK-INIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 118 YIPEDIILINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNSEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242 E + + I R+E + +LS ++ +K + L LD + Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKVTIEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E +++ + + + +L+GPH+ D I+ S GE+K ++ + L+ Sbjct: 238 IQESLKREISQKKYQEDRYKFSLVGPHKDDYKFLLNGHEAKIS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DED+R ++ Q+ ++ TDK L+ A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|296268002|ref|YP_003650634.1| DNA replication and repair protein RecF [Thermobispora bispora DSM 43833] gi|296090789|gb|ADG86741.1| DNA replication and repair protein RecF [Thermobispora bispora DSM 43833] Length = 401 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 96/409 (23%), Positives = 164/409 (40%), Gaps = 47/409 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + L + + F+G NG GKTN++EA+ +++ R A+ A + Sbjct: 1 MYVASLSLTDFRSYAGVELELEPGVSAFIGANGQGKTNLVEALGYVATHTSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ A V I+LE R+ R ++N ++ + LR Sbjct: 61 VRHGAQRAIVRAAVVRDGRRAL---IELEINPGRANRA-RVNRALMPRPRDALGLLRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN-------------- 170 P + G ERRR+LD ++ A PR D+ER++R RN Sbjct: 117 FAPEDIALVKGDPAERRRYLDELLIARAPRFAGVRADYERVLRQRNALLRSAAAARSGRR 176 Query: 171 ---------RLLTEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE- 219 G D + +A + G ++ AR+E+++AL SL + Sbjct: 177 GARRAEDEAAFAAIGAGDVLATLDVWDAHLVRHGAELTAARMELVDALRSLTAKAYAALA 236 Query: 220 -NFPHIKLSLTGFLDGKFDQSF-----------CALKEEYAKKLFDGRKMDSMSRRTLIG 267 + + L + A+ E L R+ + TL+G Sbjct: 237 PSSGAVDLEYRSAAVDAAAAAPSTGGPGGGDRREAVAEWLRAALAQARQAELERGVTLVG 296 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 PHR DL++ + S GE + + LA L+ G P+L+LD++ A LD Sbjct: 297 PHRDDLLLTLKGMP-ARGYASHGEAWSFALALRLAAYELL-RADGGDPVLILDDVFAELD 354 Query: 328 EDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQALCI 375 D+R L IV Q+ +T V D L + ++ + Sbjct: 355 HDRRRRLAEIVAPAE-QVLITAAVPDDVPDEL--SGARFDVTGGCVTRV 400 >gi|291531946|emb|CBK97531.1| recF protein [Eubacterium siraeum 70/3] Length = 377 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 164/385 (42%), Gaps = 32/385 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK L + FRN F + G+N GKTN+ EAIS L G FR + + Sbjct: 1 MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAIS-LCMGPSFRTSRQSSY 59 Query: 65 TRIGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 + +F+T + E L + +I + + ++ N + I+ E Sbjct: 60 IPFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTIC------NNKKEIKYNGLSIKSALE 112 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L L+ +P + G+ RR +LD + P H +++ + + ++ +N LL Sbjct: 113 LYGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFG 172 Query: 176 GYFDSSW------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSL 228 F S + +A G+ + R++ + L ++ + + + ++ L Sbjct: 173 INFSDDLSVIRPQIESWNSVLAAEGLNVTYGRLKYFSLLETIASQLYNELSGGENLTLKY 232 Query: 229 TGFLDGKFD---QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 + + + +L EY ++L + + + R T++G HR D+ + Y D Sbjct: 233 YSSIFDSTELKCEEINSLYNEYLERLNNSFQRELKMRYTVLGVHRDDMNL-YIDNNDVKE 291 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 GS G+Q+ + + LA A +I PI++LD++ + LD ++ + + I SQ+ Sbjct: 292 FGSQGQQRSTALALKLAEAEIIRQKD-ETPIMILDDVLSELDAGRQRFVLNHI--INSQV 348 Query: 346 FMTGTDKSVFDSLNETAKFMRISNH 370 F+T + + L K ++ N Sbjct: 349 FITCCNINDVKELK-NGKVWKVENG 372 >gi|167751442|ref|ZP_02423569.1| hypothetical protein EUBSIR_02438 [Eubacterium siraeum DSM 15702] gi|167655688|gb|EDR99817.1| hypothetical protein EUBSIR_02438 [Eubacterium siraeum DSM 15702] Length = 377 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 84/385 (21%), Positives = 162/385 (42%), Gaps = 32/385 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK L + FRN F + G+N GKTN+ EAIS L G FR + + Sbjct: 1 MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAIS-LCMGPSFRTSRQSSY 59 Query: 65 TRIGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 + +F+T + E L + +I + + ++ N + I+ E Sbjct: 60 IPFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTIC------NNKKEIKYNGLAIKSALE 112 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L L+ +P + G+ RR +LD + P H +++ + + ++ +N LL Sbjct: 113 LYGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFG 172 Query: 176 GYFDSSW------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSL 228 F S + +A G+ + R++ + L ++ + + + +KL Sbjct: 173 INFGDDLSVIRPQIESWNSVLAAEGLNVTYGRLKYFSLLETIASQLYNELSGGEELKLKY 232 Query: 229 TGFLDGKFD---QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 + + + L EY ++L + + R T++G HR D+ + Y D Sbjct: 233 YSSIFDSTELKCEEINGLYNEYLERLNSSFQRELKMRYTVLGVHRDDMNL-YIDNNDVKE 291 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 GS G+Q+ + + LA A +I PI++LD++ + LD ++ + + I SQ+ Sbjct: 292 FGSQGQQRSTALALKLAEAEIIRQKD-ETPIMILDDVLSELDAGRQRFVLNHI--INSQV 348 Query: 346 FMTGTDKSVFDSLNETAKFMRISNH 370 F+T + + L K ++ N Sbjct: 349 FITCCNINDVKELK-NGKVWKVENG 372 >gi|331007623|ref|ZP_08330765.1| DNA recombination and repair protein RecF [gamma proteobacterium IMCC1989] gi|330418563|gb|EGG93087.1| DNA recombination and repair protein RecF [gamma proteobacterium IMCC1989] Length = 378 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 162/376 (43%), Gaps = 17/376 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+I RN + + + IF GDNG GKT+ILEA++ + GR FR + Sbjct: 4 LKTLSIQHLRNLNEVSIELSHKINIFYGDNGSGKTSILEAVALVGLGRSFRSHKTRSLVN 63 Query: 67 IGSPSFFSTFARVEGME---GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + F ++ + G A I + ++ + + ++++ IR L K L + Sbjct: 64 HQQTQ-LTVFTHLDVSDIDVGSASIPVGVQKSRNGTG-AIRVSGETIRSAAILAKQLPLL 121 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + ++ G ++RR+FLD +VF + P ++ ++ RN LL S Sbjct: 122 IINAGSFQLIEGSPVQRRQFLDWLVFHVKPEFAELWRALQKALKQRNSLLRRDKITRSDI 181 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ L I+ R E+ +L S Q+ + + + + D S A Sbjct: 182 KPWDHELVRLSQVIDSFRSEVFLSLISCFERCGQEFAVDQLNIDMEYYRGWDKDLSIEA- 240 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L + + D T GP R+D+ + K S G++K ++ + +A Sbjct: 241 ------ALENDFERDCRDGYTHQGPQRADIKIKSKSKPAVDVL-SRGQEKSLICALTIAQ 293 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362 A L +T + L+D+++A LD+ L + +T++ +Q+ +TG + + +F N+ Sbjct: 294 AHLYQQSTSGNCVFLIDDLAAELDKQHIETLTKWLTELNAQVLVTGVNKEELFSPWNKDK 353 Query: 363 K---FMRISNHQALCI 375 + + + + Sbjct: 354 TDVAVFHVKHGEVESV 369 >gi|300866238|ref|ZP_07110950.1| DNA replication and repair protein recF [Oscillatoria sp. PCC 6506] gi|300335757|emb|CBN56110.1| DNA replication and repair protein recF [Oscillatoria sp. PCC 6506] Length = 395 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 87/401 (21%), Positives = 173/401 (43%), Gaps = 36/401 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ +++ +FRNY +++FDA TI VG+N GK+N+LEA+ LS + R D+ Sbjct: 1 MYLRSIHLRQFRNYRDQKVIFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRATRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + A +E G+ D+++ L + R + +N +R + L Sbjct: 61 I-LDAKPIGQIDASLERQTGIIDLTLTLRNQGR---RTVGLNGEPLRRHLDFLSVLNTVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 + G RR ++DR+V ++P + + + +++R RN L + Sbjct: 117 FSSLDLDLVRGSPEHRRDWIDRLVTQLEPVYAHILQQYNQILRQRNAFLRREKEQANKGE 176 Query: 181 -------------------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 S + +AQ+A G ++ R ++ L L + + + Sbjct: 177 LPTTNYQSPITNYQSPITNSELALWDAQLATAGARVIRRRDRVLERLIPLAQSWHRSISG 236 Query: 222 PHIKLSLTGFLDGKFDQSFCA------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 L + + + Q A +++ + K+ + + TL+GPHR D+ Sbjct: 237 SMEVLDVKYIPNVEVIQELIARDRLEGVRQAFLDKIRERAIAEYYQGTTLVGPHRDDISF 296 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 + +GS G+Q+ +++ + LA +LI G P+LLLD++ A LD +++N L Sbjct: 297 TINNTP-ARQYGSQGQQRTLVLALKLAELQLIEEVVGEPPLLLLDDVLAELDLNRQNQLL 355 Query: 336 RIVTDIGSQIFMTGTDKSVFDS-LNETAKFMRISNHQALCI 375 + + Q +T T FD+ + + + + Q I Sbjct: 356 ETIQE-RFQTLITTTHLGAFDAQWLQQTQILSVQAGQITQI 395 >gi|75909597|ref|YP_323893.1| recombination protein F [Anabaena variabilis ATCC 29413] gi|97180310|sp|Q3M7N8|RECF_ANAVT RecName: Full=DNA replication and repair protein recF gi|75703322|gb|ABA22998.1| DNA replication and repair protein RecF [Anabaena variabilis ATCC 29413] Length = 376 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 169/375 (45%), Gaps = 13/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ FRNY ++ F A TI VG+N GK+N+LEA+ L+ R R A D+ Sbjct: 1 MYLKTLHLRHFRNYYDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMARDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + P A +E G++D+S+ L R + +N +R + L Sbjct: 61 VQEEEP-LAQINATLERDTGVSDLSLILRRNGR---RTVALNGESLRRQMDFLGVLNAVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FD 179 + G RR +LD ++ ++P + + + +++R RN L + Sbjct: 117 FSSLDLELVRGSPEVRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAYLKKLQDSALTTQ 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S + +AQ+ G K+ R + L+ L + + L ++ + + Q+ Sbjct: 177 DSALAIWDAQLVTTGTKVIRRRDRALARLAPLATAWHTSISGSTEVLQISYTPNVQLMQN 236 Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +++ + +L + TL+GPHR ++ + ++ +GS G+Q+ +++ Sbjct: 237 QPEQVQQAFLSQLQQRAVPEMYRGTTLVGPHRDEVELTI-NQTPARQYGSQGQQRTLVLA 295 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357 + LA +LI P+LLLD++ A LD ++N L + D Q +T T S FD+ Sbjct: 296 LKLAELQLIEEVVKEPPLLLLDDVLAELDPSRQNQLLDTIQD-RFQTLITTTHLSSFDAQ 354 Query: 358 LNETAKFMRISNHQA 372 +++ + + + Sbjct: 355 WLNSSQILFVEQGKI 369 >gi|294505883|ref|YP_003569941.1| DNA replication and repair protein recF [Salinibacter ruber M8] gi|294342211|emb|CBH22989.1| DNA replication and repair protein recF [Salinibacter ruber M8] Length = 412 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 75/379 (19%), Positives = 154/379 (40%), Gaps = 16/379 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR +A + G NG GKTN+LEA+ +L + F + Sbjct: 1 MILHTLRLRSFRAHAESEFDLAPSINLLYGANGAGKTNVLEAVHYLCLTKSFTASRDRYA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +P +F R+ G ++++L + + +N + + ++ L + Sbjct: 61 VRKDAP-YFEIEGRI-GQVREEPMTVRLAYVPGEG-KSIFVNGAELDRLADIVGTLPVVV 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEGYFD 179 P + +G ERRRF++ ++ + ++ + R R RN +L Sbjct: 118 FSPEDYDLTAGGPSERRRFVNNILSQARSVYMETLMKYRRARRQRNEVLRSYKKRSAPPP 177 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK--LSLTGFLDGKFD 237 + ++ LG +I R + + A + + E ++ + + + D D Sbjct: 178 DELLAPWTEKLVGLGSRIVHRRQQFLQAFADDLEEAYRRIDAVAERPTIEYDTIADLAPD 237 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + A+++ + L + + TL+GP R +L+ D + +GS G+ + + Sbjct: 238 ATPDAIEDAFRAALARKQGQERDRGTTLVGPQRDELVFRLDDLEVR-RYGSQGQHRTFAM 296 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFD 356 + LA + P+LLLD+ LD ++ ++ +D Q +T T + F Sbjct: 297 ALKLAQYFYLQQRNDTEPLLLLDDAFGKLDAERTGVFLDLLRSDAVGQSLVTATRRGPF- 355 Query: 357 SLNETAKFMRISNHQALCI 375 E A ++H+AL + Sbjct: 356 ---EPALNAEPASHRALQV 371 >gi|327334561|gb|EGE76272.1| RecF protein [Propionibacterium acnes HL097PA1] Length = 394 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 161/391 (41%), Gaps = 27/391 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ + Sbjct: 1 MFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ G + + +++E R+ R + E+ LR Sbjct: 61 VRLGADQAVVRGRVRAGADDARSLLLEVEINARRANRARIN-RAPLTRPREILGVLRTVV 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P+ + G +RR FLD +V PR D+ER+++ RN LL G Sbjct: 120 FSPNDLAVVRGDPSDRRTFLDGLVMTRWPRMAAVKADYERVLKQRNALLKSLSGKGRSAG 179 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGFL 232 + + ++A +G ++ AR++ ++A+ L ++ + T L Sbjct: 180 AEIGATMDIWDDELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLATASYKSTIDL 239 Query: 233 DGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 +G + L + L R + + TL+GP R D+++ + Sbjct: 240 EGLWSPPQEGKNPEPIDRNELAHRFLAALATRRADELIRGVTLVGPQRDDIVLHIGEMPA 299 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 300 K-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQAD 357 Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 358 -QVLVTAAVASDVPEIL-RGERFDVGGGQVL 386 >gi|34763294|ref|ZP_00144252.1| DNA replication and repair protein recF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887042|gb|EAA24155.1| DNA replication and repair protein recF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 369 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 74/368 (20%), Positives = 159/368 (43%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + FRN + + + +F G N GKT++LEAI + S G F+ +++ Sbjct: 1 MKISNITYLNFRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + + +A+ I + ++ + + + + I Sbjct: 61 IKYNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGKVNIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + ++++L++ RN+ L E +S + Sbjct: 118 YIPEDIILINGSPRHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242 E + + I R+E + +LS ++ +K + L LD + Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E K++ + + + +L+GPH+ D ++ S GE+K ++ + L+ Sbjct: 238 IQESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKVS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DED+R ++ Q+ ++ TDK L+ A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|89092266|ref|ZP_01165220.1| DNA replication and repair protein RecF [Oceanospirillum sp. MED92] gi|89083354|gb|EAR62572.1| DNA replication and repair protein RecF [Oceanospirillum sp. MED92] Length = 363 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 81/372 (21%), Positives = 143/372 (38%), Gaps = 17/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I RN +S+ + I G+NG GKT+ILEAI+ L R FR + Sbjct: 1 MSISNLQIKNLRNISSISFAPSSAINIICGENGSGKTSILEAINVLGLTRSFRTNKARHL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S FA ++ M S+ +E + R + + L + + + Sbjct: 61 VQTEQAS-TVVFASIDPMAQGFKQSLGVERPVEGEARIRFEGGDI--DLSTLAELIPLQV 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + G RR+FLD VF D + F R+++ RN LL G D+ Sbjct: 118 INSDTFMLLEGSPAVRRQFLDWGVFHADKAFIQLWRGFRRVLKQRNTLLKCGKIDNQLRQ 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGFLDGKFDQSFCAL 243 + + ++ R+E + L + V + ++L + D K Sbjct: 178 VWDREFIAFSDQLTRLRIEYLKLLKPEFDKVVSQLLGDMDVQLGFSYGWDKKR------- 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + L + D T GP R+D+ + S G++K+V+ + LA Sbjct: 231 --QLDEVLASNFERDLRQGFTGSGPQRADIKLKVDGHNAAERL-SRGQKKLVVSALKLAQ 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL---NE 360 L G I L+D++ + LD +++ +Q F+T D S ++ Sbjct: 288 GALFQRMNGRPCIYLIDDLPSELDSAHGELFCKVLEQSSNQCFITCVDDSSLNAFWHSQT 347 Query: 361 TAKFMRISNHQA 372 RI++ Sbjct: 348 DIATFRIADGDI 359 >gi|50841500|ref|YP_054727.1| recombination protein F [Propionibacterium acnes KPA171202] gi|81612508|sp|Q6ABL2|RECF_PROAC RecName: Full=DNA replication and repair protein recF gi|50839102|gb|AAT81769.1| DNA replication and repair protein RecF [Propionibacterium acnes KPA171202] Length = 394 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 162/391 (41%), Gaps = 27/391 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ + Sbjct: 1 MFVEHLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ G + + +++E R+ R + R D L LR Sbjct: 61 VRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTVV 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P+ + G +RR FLD +V PR D+ER+++ RN LL G Sbjct: 120 FSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAG 179 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGFL 232 + + ++A +G ++ AR++ ++A+ L ++ + T L Sbjct: 180 AEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTIDL 239 Query: 233 DGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 +G + L + L R + + TL+GP R D+I+ + Sbjct: 240 EGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMPA 299 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 300 K-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQAD 357 Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 358 -QVLVTAAVASDVPEIL-RGERFDVGGGQVL 386 >gi|51473311|ref|YP_067068.1| recombination protein F [Rickettsia typhi str. Wilmington] gi|81692324|sp|Q68XQ6|RECF_RICTY RecName: Full=DNA replication and repair protein recF gi|51459623|gb|AAU03586.1| DNA replication and repair protein RecF [Rickettsia typhi str. Wilmington] Length = 360 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 183/361 (50%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + LN+ +RN+ +L L D I G+NG GKTNILEAIS PGRG R + D+ + Sbjct: 6 LHSLNLENYRNFKNLELKIDNIPIILTGENGSGKTNILEAISLFYPGRGLRSSKLTDICK 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + A ++ G+AD S ++ +R R + N I +EL+K + WL Sbjct: 66 T-SEDYCRVKALLQSKLGIADFSTHIKRNSNR--RITEYNASKI-ANNELSKFTSMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ S +RR+FLDR+V+ D +H + +E M RN++L E D++W I Sbjct: 122 PQMEGIFTSSSTDRRKFLDRIVYNFDTKHAELLNKYEYYMHERNKILAEDIRDNNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E MA + I R++ I + I E + FP LS+ G ++ K + Sbjct: 182 EENMANISNIIANNRLKTIRFMQQAIDEI--ENEFPKADLSIDGIIEQKILNVEEDIVSF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 IITELYQTRSKDKLLGRTSFGIHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNS 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T PILLLDEI HLD+ +R L T + Q+++T T+ ++ A+ ++ Sbjct: 300 TIKLTKITPILLLDEIFVHLDDKRRQYLMDFFTALNIQLWVTATNLDGIENFANKAQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|17230866|ref|NP_487414.1| recombination protein F [Nostoc sp. PCC 7120] gi|20978593|sp|Q8YRR9|RECF_ANASP RecName: Full=DNA replication and repair protein recF gi|17132469|dbj|BAB75073.1| DNA repair and genetic recombination protein [Nostoc sp. PCC 7120] Length = 376 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 167/375 (44%), Gaps = 13/375 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ FRNY ++ F A TI VG+N GK+N+LEA+ L+ R R A D Sbjct: 1 MYLKTLHLRHFRNYYDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMARDRDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + P A +E G++D+S+ L R + +N +R + L Sbjct: 61 VQEEEP-VAQINATLERDTGVSDLSLILRRNGR---RTVALNGEPLRRQMDFLGVLNAVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FD 179 + G RR +LD ++ ++P + + + +++R RN L + Sbjct: 117 FSSLDLELVRGSPEVRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAYLKKLQDSALTTQ 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S + +AQ+ G K+ R + L+ L + + L + + + ++ Sbjct: 177 DSALAIWDAQLVTTGTKVIRRRDRALARLAPLATAWHTSISGSTEVLQINYTPNVQLVKN 236 Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +++ + +L + TL+GPHR ++ + ++ +GS G+Q+ +++ Sbjct: 237 QPEEVQQAFLSQLQQRAVPEIYRGTTLVGPHRDEVELTI-NQTPARQYGSQGQQRTLVLA 295 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357 + LA +LI P+LLLD++ A LD ++N L + D Q +T T S FD+ Sbjct: 296 LKLAELQLIEEVVKEPPLLLLDDVLAELDPSRQNQLLDTIQD-RFQTLITTTHLSSFDAQ 354 Query: 358 LNETAKFMRISNHQA 372 +++ + + + Sbjct: 355 WLNSSQILFVEQGKI 369 >gi|254419522|ref|ZP_05033246.1| RecF/RecN/SMC N terminal domain, putative [Brevundimonas sp. BAL3] gi|196185699|gb|EDX80675.1| RecF/RecN/SMC N terminal domain, putative [Brevundimonas sp. BAL3] Length = 377 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 197/374 (52%), Gaps = 13/374 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +++FR+YAS RL + + G NG GKTN+LEAIS L+PG+G R A+ A++ R Sbjct: 2 ITSLTLTDFRSYASARLELASGPVVLHGPNGAGKTNLLEAISLLTPGKGLRGATAAEMGR 61 Query: 67 IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + +A + ++ + ++T + R ++I+ L +LR W Sbjct: 62 REPGEAVGRAWAVMVELDDETRLGTGVQTAGA-ARRIVRIDGETA-QPGRLLDYLRPVWA 119 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDSS 181 P DR+FS ER +F DR+VFA DP H + +E+ +R R RLL + D Sbjct: 120 TPEQDRLFSDARAERLKFFDRLVFAADPDHAAAVSAYEKALRERLRLLNDAQDGREADPV 179 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QS 239 W ++EA++ E G + +ARV ++AL + I + + FP L L G + + Sbjct: 180 WLDALEARLGEAGARAALARVAALHALQAAI-DARRDRPFPQADLGLDGPAEQMAEAGAE 238 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + + L R D + R+L GPHR+DL + +K A GS+GEQK +++ + Sbjct: 239 EDEIAAAIREGLAKARARDGAAGRSLFGPHRTDLTALHREKNRPAAEGSSGEQKALVLNL 298 Query: 300 FLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 LA +++ P+LLLDE AHLDE +R ALF + + Q FMTGT++S+F Sbjct: 299 ILAQISRLAHHDAAGAARPVLLLDEAPAHLDEARRAALFDEIVALDLQAFMTGTERSLFA 358 Query: 357 SLNETAKFMRISNH 370 L+ A+F+R++ Sbjct: 359 GLDGRAQFVRVAGG 372 >gi|302381120|ref|YP_003816943.1| SMC domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302191748|gb|ADK99319.1| SMC domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 381 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 117/377 (31%), Positives = 184/377 (48%), Gaps = 15/377 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L +++FR+YA+ L + + G NG GKTN+LEA+S +PG+G R A+ ++ R Sbjct: 2 IRALTLTDFRSYAAATLSVETGPVVLHGPNGAGKTNLLEALSLFTPGKGLRAATAQEMGR 61 Query: 67 IG----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ + G +G D+ + + + R + + L +LR Sbjct: 62 REPGETGGRAWAVALTLAGPDGD-DVRLGTGVQVAGAGRRMVRIEGETAQPGRLLDYLRP 120 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----F 178 W P DR+FS ER +F DR+VFA DP H + +E+ +R R RLL +G Sbjct: 121 VWATPEQDRLFSDARAERLKFFDRLVFAADPGHAAAVAGYEKALRERLRLLVDGAEGREA 180 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD- 237 D W ++E ++ E G + AR + L + I ++ FP L L G + Sbjct: 181 DPLWLDALEVRLGETGARAASARARALGVLQAAIDARAER-PFPQADLGLDGAAETAAAN 239 Query: 238 -QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 A+ + + R D + R+L GPHR+DL + +K A GS+GEQK ++ Sbjct: 240 GSDDEAIAAGIREGMARSRARDGAAGRSLFGPHRTDLTALHREKNRPAAEGSSGEQKALV 299 Query: 297 VGIFLAHARLISNTTG---FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA + T G P+LLLDE AHLD +R ALF + + Q FMTGT+ Sbjct: 300 LNLILAQIGRLKATGGPTPAPPVLLLDEAPAHLDAGRRAALFDEIVALDLQAFMTGTEAD 359 Query: 354 VFDSLNETAKFMRISNH 370 +F+ L A F+R+ Sbjct: 360 LFEPLRGRAAFVRVEGG 376 >gi|114568557|ref|YP_755237.1| DNA replication and repair protein RecF [Maricaulis maris MCS10] gi|114339019|gb|ABI64299.1| DNA replication and repair protein RecF [Maricaulis maris MCS10] Length = 384 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 11/369 (2%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-TRIG 68 L ++ FR+Y L L G+NG GKTN+LEAISFL+PGRG R A V TR G Sbjct: 17 LRLTNFRSYPDLDLELSPAPVALFGENGAGKTNLLEAISFLAPGRGMRSAGADGVATRSG 76 Query: 69 SPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + ++ FA + EG + + + R +I+ L + + + WL Sbjct: 77 ADIAPEWAVFAEADTREGGFRLGVG---ARGSARRETRIDGEPAAQNA-LARLMPMIWLT 132 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P+ DR+F+G +R +F DR+V A DP H +E+ R RLL EG D SW +I Sbjct: 133 PAQDRLFAGPRADRLKFFDRLVHAADPAHADAASAYEKSRTRRQRLLDEGGQDPSWLGAI 192 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA--LK 244 E +MA GV + AR++ + L I + + FP L+L G ++ + A + Sbjct: 193 EVEMAGHGVAMAAARLDALIRLQGEIDQRPEGV-FPQADLALDGAVEADLAEGLTAGEAE 251 Query: 245 EEYAKKLFDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + L DGR+ D+ + RTL GPHR++L+ + K STGEQK +++ + LA Sbjct: 252 DRFLAALRDGRRRDAAAGRTLTRGPHRTELLARHRAKDQPAGDCSTGEQKALILTLALAQ 311 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 AR + G AP+LLLDE AHLD +R+ L R + GSQ ++TG +K +F+ + + Sbjct: 312 ARALGQQWGVAPLLLLDEACAHLDALRRDGLAREILASGSQAWLTGVEKVLFEPFGDAIQ 371 Query: 364 FMRISNHQA 372 + + Sbjct: 372 YREVHEGGV 380 >gi|282853042|ref|ZP_06262379.1| DNA replication and repair protein RecF [Propionibacterium acnes J139] gi|282582495|gb|EFB87875.1| DNA replication and repair protein RecF [Propionibacterium acnes J139] gi|327328942|gb|EGE70702.1| RecF protein [Propionibacterium acnes HL103PA1] Length = 394 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 165/392 (42%), Gaps = 29/392 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ + Sbjct: 1 MFVERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ G + + +++E R+ R + R D L LR Sbjct: 61 VRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTVV 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P+ + G +RR FLD +V PR D+ER+++ RN LL G Sbjct: 120 FSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAG 179 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + + ++A +G ++ AR++ ++A+ LI +E P L+ + Sbjct: 180 AEIGATMDIWDNELATIGAELLSARLDTLSAIMPLISTAY-REIAPANDLTTASYKSTID 238 Query: 237 DQSFCALKEE---------------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 + + ++E + L R + + TL+GP R D+I+ + Sbjct: 239 LEGLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 298 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 299 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 356 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 357 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 386 >gi|262066870|ref|ZP_06026482.1| RECF protein [Fusobacterium periodonticum ATCC 33693] gi|291379421|gb|EFE86939.1| RECF protein [Fusobacterium periodonticum ATCC 33693] Length = 369 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 160/368 (43%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI ++ FRN + + + +F G N GKT++LEAI + S G F+ ++ Sbjct: 1 MKISNISYLNFRNLENTSVELSEKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTTEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F S+ + IS++ + + N I D K + I Sbjct: 61 IKYNFDEFISSIS-YSDYIANNKISVRF-KNIPGAKKEFFFNKKRISQTDFYGK-INIIA 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + ID + + ++++L++ RN+ L E ++ + Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLNNLKNYDKLLKIRNKYLKENKRNTEEFA 177 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQSFCA 242 E + + I R+E + +LS ++ +K +L+L LD + Sbjct: 178 IYEKEFIKYASYIIFTRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTIEM 237 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E K++ + + R +L+GPH+ D I+ S GE+K ++ + L+ Sbjct: 238 IQESLQKEISQKKYQEDRYRFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +I P++++D+I+++ DE++R ++ Q+ ++ TDK L+ A Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEERRKSILEFFNKRDIQVLISSTDK-----LDIEA 351 Query: 363 KFMRISNH 370 K + Sbjct: 352 KNFYVEKG 359 >gi|291558316|emb|CBL35433.1| Recombinational DNA repair ATPase (RecF pathway) [Eubacterium siraeum V10Sc8a] Length = 377 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 163/385 (42%), Gaps = 32/385 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK L + FRN F + G+N GKTN+ EAIS L G FR + + Sbjct: 1 MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAIS-LCMGPSFRTSRQSSY 59 Query: 65 TRIGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 + +F+T + E L + +I + + ++ N + I+ E Sbjct: 60 IPFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTIC------NNKKEIKYNGLAIKSALE 112 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L L+ +P + G+ RR +LD + P H +++ + + ++ +N LL Sbjct: 113 LYGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFG 172 Query: 176 GYFDSSW------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSL 228 F S + +A G+ + R++ + L ++ + + + ++ L Sbjct: 173 INFGDDLSVIRPQIESWNSVLAAEGLNVTYGRLKYFSLLETIASQLYNELSGGENLTLKY 232 Query: 229 TGFLDGKFD---QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 + + + L EY ++L + + + R T++G HR D+ + Y D Sbjct: 233 YSSIFDSTELKCEEINGLYNEYLERLNNSFQRELKMRYTVLGVHRDDMNL-YIDNNDVKE 291 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 GS G+Q+ + + LA A +I PI++LD++ + LD ++ + + I SQ+ Sbjct: 292 FGSQGQQRSTALALKLAEAEIIRQKD-ETPIMILDDVLSELDAGRQRFVLNHI--INSQV 348 Query: 346 FMTGTDKSVFDSLNETAKFMRISNH 370 F+T + + L K ++ N Sbjct: 349 FITCCNINDVKELK-NGKVWKVENG 372 >gi|289424466|ref|ZP_06426249.1| DNA replication and repair protein RecF [Propionibacterium acnes SK187] gi|289427445|ref|ZP_06429158.1| DNA replication and repair protein RecF [Propionibacterium acnes J165] gi|289155163|gb|EFD03845.1| DNA replication and repair protein RecF [Propionibacterium acnes SK187] gi|289159375|gb|EFD07566.1| DNA replication and repair protein RecF [Propionibacterium acnes J165] gi|332674402|gb|AEE71218.1| recombination protein F [Propionibacterium acnes 266] Length = 394 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 162/391 (41%), Gaps = 27/391 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ + Sbjct: 1 MFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ G + + +++E R+ R + R D L LR Sbjct: 61 VRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTVV 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P+ + G +RR FLD +V PR D+ER+++ RN LL G Sbjct: 120 FSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAG 179 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGFL 232 + + ++A +G ++ AR++ ++A+ L ++ + T L Sbjct: 180 AEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTIDL 239 Query: 233 DGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 +G + L + L R + + TL+GP R D+I+ + Sbjct: 240 EGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMPA 299 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 300 K-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQAD 357 Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 358 -QVLVTAAVASDVPEIL-RGERFDVGGGQVL 386 >gi|67925054|ref|ZP_00518434.1| RecF protein [Crocosphaera watsonii WH 8501] gi|67853101|gb|EAM48480.1| RecF protein [Crocosphaera watsonii WH 8501] Length = 380 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 175/386 (45%), Gaps = 21/386 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ FRNY L F++Q TI +G+N GK+N+LEA+ L+ + R D+ Sbjct: 1 MYLKNIHLYAFRNYHEQTLNFESQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G VE G + + I + RS L +N +R E H+ Sbjct: 61 ILEGEKKG-QILGTVERNYGESQMGITFRSPGRRS---LMLNHENLRRHLEFLGHINAVE 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 + G RR +LD ++ ++P + + + +++R RN LL Sbjct: 117 FSCLDLELVRGSPETRRSWLDTLLIQLEPVYASIINQYNKVLRQRNALLKVIRKTVEEQT 176 Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 + S + Q+AE G ++ R +I +S L + ++ + KL + Sbjct: 177 NTDNLSAEMSQLKLWDQQLAEAGTRVTRRRNRVIERISPLAENWHKEISNGTEKLEINYL 236 Query: 232 LDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + D + +++ + K+ R + +++GPHR D+ + + ++GS G Sbjct: 237 PNISIDREEPQEVQQAFLDKIEQRRMAEQQLATSVVGPHRDDVELKI-NHTPAKSYGSQG 295 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ +++ I LA +LI + G P+LLLD++ A LD +++N L ++ Q +T T Sbjct: 296 QQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDPNRQNQLLEVIQG-RFQTIITTT 354 Query: 351 DKSVFDS-LNETAKFMRISNHQALCI 375 FD+ ++++ M++ + + Sbjct: 355 YLHSFDTQWLKSSQIMKVEGGKLFQM 380 >gi|262039510|ref|ZP_06012812.1| DNA replication and repair protein RecF [Leptotrichia goodfellowii F0264] gi|261746491|gb|EEY34028.1| DNA replication and repair protein RecF [Leptotrichia goodfellowii F0264] Length = 364 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 158/371 (42%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L+ S FR + D + G NG GKT+ +EA+ FL+ G+ FR ++ Sbjct: 1 MYLKQLSYSNFRCLEDTKTELDRNFNLIYGKNGQGKTSFIEAVHFLATGKSFRTKKTKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + E ++I + + + IN + +D L I Sbjct: 61 FRYNKNRVIVFGKYINKNEEENILAIDV----NEEKKDFYINRNKNKYID-YVGLLNIIS 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P I G RR F + + + + ++DFE++++ RN+L+ E S Sbjct: 116 FIPEDIEIIVGNPSIRRNFFNYEISQAKKDYLKSIVDFEKILKTRNKLIKEKKTREEIYS 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCA 242 + E G I I R E I +S L+ +K P +KL FL ++ Sbjct: 176 IYNEKFMEEGTNIIIHRREFIKNISILLNLNYRKLFDPKSELKLKYDCFLGDIDKKTKEE 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +KE++++ + + + + +L GP + D I + K + S GE+K ++ + ++ Sbjct: 236 IKEKFSENIKRKAEREKILGYSLTGPQKDDFIFELNGKNAK-SFSSQGEKKSIIFSLKVS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++ P+ ++D+I+++ DE ++ ++ + Q F+T T+ LN Sbjct: 295 EIDMLVKEKNEYPLFIMDDIASYFDEVRKKSILDYFINKKIQCFITSTE-----DLNIKG 349 Query: 363 KFMRISNHQAL 373 K I + + Sbjct: 350 KKFIIEKGKVI 360 >gi|145218825|ref|YP_001129534.1| DNA replication and repair protein RecF [Prosthecochloris vibrioformis DSM 265] gi|189039632|sp|A4SC23|RECF_PROVI RecName: Full=DNA replication and repair protein recF gi|145204989|gb|ABP36032.1| DNA replication and repair protein RecF [Chlorobium phaeovibrioides DSM 265] Length = 371 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 148/356 (41%), Gaps = 15/356 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + FRN+ S + + G NG GKT+ILE I + + +GF A+ + Sbjct: 1 MRLRSIQFENFRNHRSFSFEPEDGINLIYGQNGSGKTSILEGIHYCALTKGFVSAADGEC 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + F + F G+E +S E S + LQI+ ++ + Sbjct: 61 LSFSAGYFLLTALFESSSGIETAVRLSYTKE-----SGKKLQIDGNELKPFSLHIGSIPC 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---- 178 P I SG ERRRFLD V D R+ ++ + RL++ RN LL + Sbjct: 116 ISFSPPEIVIVSGPPGERRRFLDNAVCQSDRRYLDNLLIYRRLLQQRNALLQQLSQSPGK 175 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-KLSLTGFLDGKFD 237 D S +A + RV + + + + + + + + Sbjct: 176 DRSMLQLWSENLASSAASVTAGRVRFLAEFHPFVELLHRDLSGGQMPSIEYRSTIGRLLE 235 Query: 238 Q-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 L+E + ++ + + + + +TL GPHR +L + D + + S G+Q+ L Sbjct: 236 PVPESELRERFLQRFQENEQQEILRGQTLSGPHRDEL-IFLSDGRESKRYSSQGQQRTFL 294 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + LA + + G PI LLD+I + LD + A+ I+ G Q ++ D Sbjct: 295 ISLKLALFQYFNEKIGETPICLLDDIFSELDGKRTAAVLDILEGCG-QTLISSADL 349 >gi|85710419|ref|ZP_01041483.1| recombinational DNA repair ATPase [Erythrobacter sp. NAP1] gi|85687597|gb|EAQ27602.1| recombinational DNA repair ATPase [Erythrobacter sp. NAP1] Length = 362 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 132/371 (35%), Positives = 190/371 (51%), Gaps = 19/371 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + FRN+A L A + VG+NG GKTN+LEAIS LSPGRG RRA+ D+ Sbjct: 1 MALAKITLQNFRNHARSELAETAHFNLLVGENGAGKTNVLEAISLLSPGRGLRRANLTDL 60 Query: 65 TRI----GSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 R P F+ A +E + A I E + + R ++IN L++ Sbjct: 61 ARKAPGDAQPGAFAIGASLIEQGQVSARIGTYTEA-ERPTRRLVRINGADA-SASALSEW 118 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 +SWL P+MD +F+ + RRRF+DRM AI+P H + + E +R RNRLL E + D Sbjct: 119 HAVSWLTPAMDGLFTDSAGARRRFVDRMALAIEPGHAKAVNQLEIALRERNRLLEE-HGD 177 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + W +IEAQ A+ G + R +I LS + + + P + LT G Sbjct: 178 ARWLDAIEAQAAQHGSVVAANRSRLIAMLSDELSAFPPE---PFARPILTYRPGGPLAP- 233 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 EE + R D + R L GPHR +L V A STGEQK +L+ I Sbjct: 234 -----EELLAEFARARPRDRAAGRALTGPHRDELEVVMMGTGQPAASSSTGEQKAMLIAI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 LAH L ++G +LLLDE++AHLD +R ALF + +Q++MTGT+ + F + Sbjct: 289 TLAHGVL--ASSGRPSVLLLDEVAAHLDPVRRKALFDRLRAGKAQVWMTGTELAPFAEIE 346 Query: 360 ETAKFMRISNH 370 E A R+S Sbjct: 347 EEAAVWRVSGG 357 >gi|260184856|ref|ZP_05762330.1| recombination protein F [Mycobacterium tuberculosis CPHL_A] gi|289445528|ref|ZP_06435272.1| DNA replication and repair protein recF [Mycobacterium tuberculosis CPHL_A] gi|289418486|gb|EFD15687.1| DNA replication and repair protein recF [Mycobacterium tuberculosis CPHL_A] Length = 385 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 154/362 (42%), Gaps = 24/362 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A + L T+FVG NG GKTN++EA+ + + R ++ + + Sbjct: 1 MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADSPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R+G+ ST +G E D+ I V ++N +R ++ LR Sbjct: 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLRAV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYF 178 P + G +RRR+LD + P ++ER++R R LL Sbjct: 116 LFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRG 175 Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----- 230 D ++++AE G ++ AR++++N L+ + + Q S+ Sbjct: 176 DRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235 Query: 231 --FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + D L L R + L+GPHR DLI+ D+ S Sbjct: 236 VTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFAS 294 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q+ +T Sbjct: 295 HGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLVT 352 Query: 349 GT 350 Sbjct: 353 AA 354 >gi|124009358|ref|ZP_01694036.1| DNA replication and repair protein RecF [Microscilla marina ATCC 23134] gi|123985020|gb|EAY24971.1| DNA replication and repair protein RecF [Microscilla marina ATCC 23134] Length = 372 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 90/382 (23%), Positives = 156/382 (40%), Gaps = 26/382 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ +N+ F+NY L L F + VGDNG GKTN+L+AI +LS +G Sbjct: 1 MFLEKINLLNFKNYEMLDLDFSSSVNCIVGDNGSGKTNLLDAIHYLSMSKGAFGGGNTQH 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FF + + +++ + + ++N + + + Sbjct: 61 VLH-KEDFFMVKGVFQAKDLDYEVTCGYK---KGQAKVFKVNQKQYDKISDHIGRFPVVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S RR+F D ++ +D + +I + ++ RN LL + D Sbjct: 117 IAPNDTDTITEGSELRRKFFDSIISQLDKNYLINLIQYTHHLKQRNSLLKQFAERNFVDR 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238 S + ++ LG + R E I + + E+ Q+ EN +L Sbjct: 177 SLIDTYNHKLIALGKAVCDKRQEFITEFAPIFREHYQELTENKEITELVYQSQF------ 230 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L+E YA D +RT G H+ D D + GS G+QK ++ Sbjct: 231 ----LEEHYADDFRQALPDDLRLQRTTRGIHKDDYDFLIDDHLLR-KFGSQGQQKSYVIA 285 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS---- 353 + LAH +I N T PILLLD+I LD+ + + L R V QIF+T Sbjct: 286 LKLAHFDIIKNYTFMKPILLLDDIFDKLDDKRMDKLMRKVAAHAFGQIFITDARPERTQA 345 Query: 354 VFDSLNETAKFMRISNHQALCI 375 VF+ ++ + I + + + Sbjct: 346 VFEHIDVEKRIFTIDKGEVVDV 367 >gi|315497054|ref|YP_004085858.1| DNA replication and repair protein recf [Asticcacaulis excentricus CB 48] gi|315415066|gb|ADU11707.1| DNA replication and repair protein RecF [Asticcacaulis excentricus CB 48] Length = 374 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 126/370 (34%), Positives = 189/370 (51%), Gaps = 9/370 (2%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L++++FR+Y L + + G NG GKTN LEAIS L+PGRG R A+ +D+ Sbjct: 4 RIHALSLTDFRSYDRLDVDLSGRSLYLFGPNGAGKTNFLEAISVLNPGRGLRGAAVSDLG 63 Query: 66 RI--GSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRI 122 R + VE DI I + R ++I+ + L H+R+ Sbjct: 64 RRLPQEAKGRAWGVSVELKSAEDDIRIGTGSDPRSLEKRLVRIDQQTV-PAGRLLDHIRL 122 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P+ DRIF ER RF DR+VFA P H + +E+ +R R +LL +G D+ W Sbjct: 123 VWLTPAQDRIFLEARAERLRFFDRLVFAATPSHATTVSAYEKALRERLKLLVQGPADAVW 182 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++E ++AE G ++ AR ++ L + I + + FP L L + + Sbjct: 183 LDALEERLAEAGSEMIGARRAALSDLQAEIEAH--ESAFPKADLGLIN--EASDARERET 238 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L + R DS + R+L GPHR+DL V + +K A STGEQK +++ + LA Sbjct: 239 LNTALREGFARARARDSAAGRSLFGPHRTDLSVFHREKDRPAADCSTGEQKALVLNLILA 298 Query: 303 HA-RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 RL + P++LLDE++AHLD +R ALF +G Q TGTD+S+FD L Sbjct: 299 QGSRLSRVKSAPNPVVLLDEVAAHLDPIRRAALFDETDRLGLQTLFTGTDESLFDGLAGR 358 Query: 362 AKFMRISNHQ 371 A +R+ Q Sbjct: 359 ALGVRVEGGQ 368 >gi|28492970|ref|NP_787131.1| recombination protein F [Tropheryma whipplei str. Twist] gi|28572178|ref|NP_788958.1| DNA replication and repair protein recF [Tropheryma whipplei TW08/27] gi|51316419|sp|Q83N51|RECF_TROWT RecName: Full=DNA replication and repair protein recF gi|51316420|sp|Q83NZ4|RECF_TROW8 RecName: Full=DNA replication and repair protein recF gi|28410309|emb|CAD66695.1| DNA replication and repair protein recF [Tropheryma whipplei TW08/27] gi|28476010|gb|AAO44100.1| recF protein [Tropheryma whipplei str. Twist] Length = 363 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 85/380 (22%), Positives = 148/380 (38%), Gaps = 28/380 (7%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M N + I +N+ FRNY + F + GDNG GKTN+ EAI FLS R Sbjct: 1 MQNNL-ISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLSGFGSHRTYK 59 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + + G A+++ G ++ I + S L+++ + +L Sbjct: 60 NQPLIKSGEQKA-EISAKIQSKYGTRNVYIGISCN---SNNILKVDGKP-SKLRDLVSVF 114 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGY 177 P + G RR++LD ++ P ++R ++ RN LL + Sbjct: 115 SCVIFSPEDIDLVKGDPGHRRKYLDDIICRARPMMLDIYSAYDRTLKQRNSLLKSFRKSS 174 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 S ++ ELG++I AR ++ L+ I E+ K L Sbjct: 175 CKSDLLDIWTQKLVELGLEIVNARKRLLKILNPKISEFYSKLAGVSSTAEL--------- 225 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 FC + R + TL GPHR ++ + + + S GE + + Sbjct: 226 --FCQSSDCLIDTFDLLRDREIEEGVTLAGPHRDNVDI-LLNSCPARSQSSQGESWTLAL 282 Query: 298 GIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + L+ L+ T P+++LD++ AHLD ++ L + V Q +T TD S Sbjct: 283 SMKLSLIELMRETKRLYDPDPVVILDDVFAHLDSYRKQKLAQEVFSYE-QTIVTTTDNS- 340 Query: 355 FDSLNETAKFMRISNHQALC 374 T++ + + + Sbjct: 341 --DNYRTSQTLVVEEGKVFS 358 >gi|307295030|ref|ZP_07574872.1| DNA replication and repair protein RecF [Sphingobium chlorophenolicum L-1] gi|306879504|gb|EFN10722.1| DNA replication and repair protein RecF [Sphingobium chlorophenolicum L-1] Length = 354 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 143/368 (38%), Positives = 197/368 (53%), Gaps = 20/368 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +S+FRN+A +V D + GDNG GKTNILEA+S L+PGRG R A+ D+ R Sbjct: 2 IGRLTLSDFRNHADALIVPDHSFIVLTGDNGAGKTNILEAVSMLAPGRGLRGAALRDMAR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F A V+G + + D R VR V + L HL I WL Sbjct: 62 QDGTGGFGIAAEVDGA--MLGTGVLASAPDRRQVRI----GGVSSSANALADHLSIVWLT 115 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185 P+MDR+F RRRFLDR+ A+ P H +E MR RNRLL + D SW S+ Sbjct: 116 PAMDRLFMDSPGGRRRFLDRLTLALHPAHAVHSARYEAAMRARNRLLGDLSAADPSWLSA 175 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +EAQM E G ++ AR +++ LS+ +E F L+L G D E Sbjct: 176 LEAQMDEHGAALSAARTDLVARLSA-ALEDQPDHPFARPLLALEGDSD-----------E 223 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 A +L R+ D+ + R+L GPHR DL V + KA A STGEQK +L+ I LAHA Sbjct: 224 PLALRLARERRRDAAAGRSLSGPHRRDLAVTHAAKAQAAALCSTGEQKALLLSILLAHAA 283 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L++ G P+LLLDE++AHLD +R ALF + + G Q++MTGT+ S+F+ L ++ Sbjct: 284 LVAAHRGQPPVLLLDEVAAHLDPSRRAALFDRLRETGGQVWMTGTEDSLFNELPVASR-F 342 Query: 366 RISNHQAL 373 ++ Sbjct: 343 SVTAGHVF 350 >gi|325478881|gb|EGC81991.1| putative DNA replication and repair protein RecF [Anaerococcus prevotii ACS-065-V-Col13] Length = 359 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 158/370 (42%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L ++ FRNY + F+ + IF+GDN GKTN+LE++ +L+ G F++ D+ Sbjct: 1 MWIKDLKLNNFRNYFYQSVEFNEDYNIFIGDNAQGKTNLLESVYYLANGTSFKKIRDNDI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S S + ++SI+++ +D + + +N V +L +I Sbjct: 61 IRF-SQSQMRLKGTIRKGRSFKEVSIEVKDKD----KSIFVNGVKYDRRKDLRSLFKIVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182 P I RR +D ++ ID ++ + D+++++ RNRLL + Sbjct: 116 FTPEDLAIIKEGPNLRRDLIDGIIEGIDFSYKAKKRDYDKILYQRNRLLKNKSSSYFNEQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S+ + + +LG I R + +N L E+ L + D D Sbjct: 176 LSAFDENLMKLGFSIYKTRKKFVNILEKFAREFHSSLTEGSELLEMKYLPDISADDFSS- 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 Y + GR D T G HR D+ + K T S G+Q+ ++ I LA Sbjct: 235 ----YVGEFKKGRSDDLKYLTTQRGIHRDDIEISINGKN-TKNFASQGQQRSAILNIRLA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +L TG ++L D++ + LDE + L + G Q +T T+ + +++ Sbjct: 290 EVKLTKEVTGDEAVILFDDVFSELDEKRSLFLLENLR--GYQTIITATNTKSLEYIDKD- 346 Query: 363 KFMRISNHQA 372 K I + Sbjct: 347 KISYIVDGNI 356 >gi|87121027|ref|ZP_01076919.1| recombination protein F [Marinomonas sp. MED121] gi|86163865|gb|EAQ65138.1| recombination protein F [Marinomonas sp. MED121] Length = 375 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 168/357 (47%), Gaps = 17/357 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L+IS+ RN + ++ + G NG GKT+ILEAI LS GR FR + Sbjct: 1 MPLQRLDISQLRNLSKVQFKPSPHVNLISGANGSGKTSILEAIHLLSLGRSFRSHKHKTY 60 Query: 65 TRIGSPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 + + FA +E G+ + I L+ + D V +++ I+ + EL + Sbjct: 61 IQKETSEC-VIFALIEPVQTTGLGLSSPQPIGLKRQLD-GVLDARLSGQKIQSLVELTQA 118 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 L I + P R+ G RR+FLD VF P +++ ++ RN LL G Sbjct: 119 LPIQLINPDAFRLLEGTPKIRRQFLDWGVFHHSPGFINAWRGWQKALKQRNSLLRRGKIS 178 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + + ++ LG ++N R + + +L + + + N +++SL F ++ Sbjct: 179 DNLLLAFDQELIRLGSEVNQYRHDYLESLIPVFKQVLSSLNA-TLEVSLQLFQGWDAQKT 237 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 A+ L R D S + GP R+DL V A S G+QK+V+ + Sbjct: 238 -------LAQSLDASRSRDIESGYSNTGPQRADLRVKTPTGDALDAL-SRGQQKLVVSAL 289 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +A +L+ +G + + L+D++ A LD++ R+ L +++ + SQIF+T + D Sbjct: 290 KIAQGKLLIE-SGRSLVFLVDDLPAELDKEHRDKLCQLLEALNSQIFITSVGPELMD 345 >gi|188574273|ref|YP_001911202.1| recombination protein F [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518725|gb|ACD56670.1| DNA replication and repair RecF protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 365 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 144/367 (39%), Gaps = 13/367 (3%) Query: 9 FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68 L+I R + ++ L + + GDNG GKT++LEA+ ++ GR FR + + G Sbjct: 2 RLSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQG 61 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + EG + + + R +++ + + L L + P Sbjct: 62 ANDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPG 121 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 + SG RRRFLD +F ++P + R ++ RN LL +G + + Sbjct: 122 SHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQG-AQPRMLDAWDH 180 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++AE G + R+ + L ++ V P + LS F G A Sbjct: 181 ELAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPGWKRHEVS-----LA 234 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L R D + T GPHR+D + + A S G+ K+ + LA A + Sbjct: 235 DALLLARDRDRQNGYTSQGPHRADWMPHFDVLPGKDAL-SRGQAKLTALACLLAQAEDFA 293 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF---M 365 P++ LD++ + LD + + + +Q+ +T T+ + L + Sbjct: 294 FERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITATE--IPPGLADAGALLHRF 351 Query: 366 RISNHQA 372 + + Q Sbjct: 352 HVEHGQV 358 >gi|77917621|ref|YP_355436.1| DNA replication and repair protein [Pelobacter carbinolicus DSM 2380] gi|97180840|sp|Q3A8M6|RECF_PELCD RecName: Full=DNA replication and repair protein recF gi|77543704|gb|ABA87266.1| DNA replication and repair protein RecF [Pelobacter carbinolicus DSM 2380] Length = 363 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 82/368 (22%), Positives = 153/368 (41%), Gaps = 11/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + +RN + L + + GDN GKTN LEAI L + FRR ++ Sbjct: 1 MILTRIILHNYRNIEAAELCPEENFNLLCGDNAQGKTNTLEAIYLLGHFKSFRRGRNEEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 GS RV+G + + + ++IN R +E+ Sbjct: 61 I--GSAD---RHTRVQGEFLRDGLRETVSITITGDKKNIEINGKRPRQSNEMFGRFPSVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RR LDR + P ++R +R RN LL G Sbjct: 116 FAPEEVSLPKGFPAGRRALLDRALCQTRPSFLDHARAYQRCLRQRNILLKSGAAAPIVL- 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++ + G + +AR ++ L L+ + ++ ++L + + LK Sbjct: 175 PWTEELIQTGAMVRLARRRYLDRLLPLLRDIYREICSGRESVNLVYPSES---DNLSDLK 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EE L + ++ T++GPHR D + D+ + + +GS G+Q+ ++ A Sbjct: 232 EELRSNLEREQSRETKYGMTMVGPHRDDPVFMVDDRVLGL-YGSQGQQRSFILAFKTAQI 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363 + TG+ P+LLLD++++ LD +++ FR + Q+F+T T+ S + + Sbjct: 291 IDLEKETGYTPLLLLDDMTSELDRKRQDYFFRFLHQRQGQVFITCTELSPLQNAGFNRMR 350 Query: 364 FMRISNHQ 371 R+ + Sbjct: 351 TFRVREGK 358 >gi|16330164|ref|NP_440892.1| recombination protein F [Synechocystis sp. PCC 6803] gi|6093944|sp|P73532|RECF_SYNY3 RecName: Full=DNA replication and repair protein recF gi|1652652|dbj|BAA17572.1| RecF protein [Synechocystis sp. PCC 6803] Length = 384 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 92/380 (24%), Positives = 173/380 (45%), Gaps = 19/380 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRNY + F AQ TI VG+N GK+N+LEA+ L+ + R + ++ Sbjct: 1 MYLKKLYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLLEAVELLATLKSHRTSRDQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ + A +E +A++ I L R L+IN R + L Sbjct: 61 VLDGAANG-QIKALLERQYSVAELEIDLRRSGR---RNLRINQNQCRRQLDFLGCLNAVE 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------- 175 + G RR++LD ++ ++P + + ++ +++ RN LL Sbjct: 117 FSCLDLDLVRGAPDCRRQWLDTLLTQLEPLYAHLLGQYQHIVKQRNALLKSLRQQWETGL 176 Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 G ++ S + Q+ E+G ++ R + L+ L E+ + + + L++T + Sbjct: 177 ALGEESTASLSLWDQQLVEMGTRVVRRRARGLARLAPLAQEWHGRISGGNETLTVTYQPN 236 Query: 234 GKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + + + + +KL R + T++GPHR ++ D +GS G+Q Sbjct: 237 VTWVGDDPEVVHQAFLEKLAQRRSAELHLGTTVVGPHRDEVGFVLDDTP-ARTYGSQGQQ 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + +++ + LA LI G P+LLLD++ A LD D++ L + D Q +T T Sbjct: 296 RTLVLALKLAELSLIETVIGEPPLLLLDDVLAELDLDRQGQLLMAIED-RFQTLITTTHL 354 Query: 353 SVFDS-LNETAKFMRISNHQ 371 S FD +A+ ++++ Q Sbjct: 355 SRFDDRWRRSAQILKVNAGQ 374 >gi|284040343|ref|YP_003390273.1| DNA replication and repair protein RecF [Spirosoma linguale DSM 74] gi|283819636|gb|ADB41474.1| DNA replication and repair protein RecF [Spirosoma linguale DSM 74] Length = 368 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 80/377 (21%), Positives = 158/377 (41%), Gaps = 25/377 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L+++ F+NY +R F Q + VG NG GKTN+L+A+ FLS + ++ A Sbjct: 1 MHLEKLSLTNFKNYEDVRYTFSRQVNVLVGPNGSGKTNLLDAVYFLSLSKSAFQSQDAMS 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F E + I+I L+ + L + + E + Sbjct: 61 ILHDTDYFIIDGIFEEHDDRTVQITISLQRG---QRKVLMADKKPYERISEHIGRFPVVL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + P+ + S +RR F D ++ +DP + R + ++++++ RN LL D+ Sbjct: 118 VAPNDTDLVREHSEDRRHFFDGVLSQLDPEYLRNYLMYQQILKQRNSLLKLFAERNQVDN 177 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + + ELG KI+ R + I+ + + ++++ + Sbjct: 178 DLLDTYDEPLLELGQKIHDRRRQFIDEFLPGFRSHYAYLSDDREEVTIQYESEVSNP--- 234 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA-----ITIAHGSTGEQKVV 295 +A + R+ D++ +RT +G H+ D GS G+QK Sbjct: 235 -----GFADEFRHFRRRDTVLQRTTMGIHKDDYSFIIESGNGQPPVPLKKFGSQGQQKTF 289 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT---- 350 ++ + LA + PILLLD+I LD+ + L + + + + Q+F+T Sbjct: 290 VIALKLAQFAQLQAEKDVKPILLLDDIFDKLDDRRIGKLIQQMDEGVFGQLFITDARPER 349 Query: 351 DKSVFDSLNETAKFMRI 367 + + ++ KF I Sbjct: 350 TRQLLTNVKADIKFFEI 366 >gi|311112569|ref|YP_003983791.1| recombination protein F [Rothia dentocariosa ATCC 17931] gi|310944063|gb|ADP40357.1| recombination protein F [Rothia dentocariosa ATCC 17931] Length = 403 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 161/392 (41%), Gaps = 30/392 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ ++R Y L L A T+F+G NGVGKTNI+EAI + + R + + Sbjct: 1 MYLDHLSLLDYRTYPLLNLPLSAGVTVFLGPNGVGKTNIIEAIDYTANLSSHRVSHDGPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ + RV + G + E S R ++IN E R Sbjct: 61 VRVGAS---RAYIRVRTVRGSQQTVTEFEIAPGASNR-VRINRAAPVRAREALGITRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P ++ G RRRF+D + ++ P ++ER++R RN LL S Sbjct: 117 FSPEDLQLVKGEPAGRRRFIDDLAVSLRPVVSGYRQEYERILRQRNSLLKTLQRRGSSAV 176 Query: 182 -------WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---- 230 Q+ +LG ++ AR ++ L + +S T Sbjct: 177 DDENAMHTLDVWSEQLTQLGAQLLAARFRVLWLLLPHLRRAYAGLTDGSKDISFTYDSTV 236 Query: 231 -------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 L+ S +K+ A++L + R + TL+GPHR D+ + A+ Sbjct: 237 FPEITERGLEHVSRMSIDDIKDAMAQRLRERRTAELERGVTLVGPHRDDITLLLGGLAVK 296 Query: 284 IAHGSTGEQKVVLVGIFLAH---ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 S GE V + + LA R + G +PIL+LD++ A LD ++R+ L +V Sbjct: 297 -QFASHGESWSVALSLRLASWFVHRADDESPGSSPILILDDVFAELDSERRHRLGALVAQ 355 Query: 341 IGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 Q+ +T S + +R+S A Sbjct: 356 AE-QVLLTSAVLSDIPEELGMYRLVRVSAAHA 386 >gi|229816228|ref|ZP_04446538.1| hypothetical protein COLINT_03278 [Collinsella intestinalis DSM 13280] gi|229808236|gb|EEP44028.1| hypothetical protein COLINT_03278 [Collinsella intestinalis DSM 13280] Length = 360 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 162/369 (43%), Gaps = 14/369 (3%) Query: 5 IKI--KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + I L++ +R++ ++ D T+FVG N VGKTN++EA+ L+ G FR+ + + Sbjct: 1 MSIAATELSVLHYRSFDDRKIELDPGITVFVGRNAVGKTNLVEALQLLTAGASFRKPTAS 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ R G S +EG L ++ + R N R + L Sbjct: 61 ELLRDGEGSG-RIRLMLEGEGRLIEMGLDF----SEGKRSFTRNGKKARAAG-IRGVLPS 114 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 P + + RR LD ++ + + + +ER + RN LL +GY Sbjct: 115 VLFCPDHLDMVKRSASRRREALDSFGVQLNENYAKLLAAYERTVEQRNNLLRDGYA-PGL 173 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-GKFDQSFC 241 + +A G ++ + R ++ + +E + PH + + G+ Sbjct: 174 LEVWDESLATTGAQLLLHRTALLERIREHFIEVYRAI-APHEEPDVRYVPSFGELAGGRE 232 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A+ ++ L R+ + TL+GPHR +++ D GS G+Q+ +++ + Sbjct: 233 AIAAQFLDALAQRREDELRRGCTLVGPHRDEVLFTI-DGRSARDFGSQGQQRSIVLAWKI 291 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNE 360 A ++ + G P+LLLD++ + LD +R+A+ + D Q +T T+ F D + Sbjct: 292 AEVQVTRDILGRYPLLLLDDVMSELDAARRDAIVGFIAD-EIQTVITTTNLGYFADDMLA 350 Query: 361 TAKFMRISN 369 A+ +RI + Sbjct: 351 RARVIRIGD 359 >gi|189499003|ref|YP_001958473.1| DNA replication and repair protein RecF [Chlorobium phaeobacteroides BS1] gi|226737774|sp|B3EJI1|RECF_CHLPB RecName: Full=DNA replication and repair protein recF gi|189494444|gb|ACE02992.1| DNA replication and repair protein RecF [Chlorobium phaeobacteroides BS1] Length = 363 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 75/353 (21%), Positives = 148/353 (41%), Gaps = 10/353 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + + FR + L T+ G NG GKTNILEA+ + + RG R+ + Sbjct: 1 MRLQEIQLVNFRKHKELVFAPSEAITVVYGPNGSGKTNILEAVHYCTLARGLNRSLDREC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F + + + E ++ + IN ++ +L + Sbjct: 61 LNFDAGYFLLQGTFADDRGIELSVKVSYEKNVEKK---IFINSDELKKYSQLIGRIPCVT 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSS 181 P + +G ERRRF+D + + + ++ + R+++ RN LL E D Sbjct: 118 FSPMELSLVNGSPQERRRFMDNALSQTNKSYLDDLLQYRRVLQQRNTLLGAVNEKGMDRD 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-KLSLTGFLDGKFDQ-S 239 ++ +L I R+ I L I ++ + +S ++ + Sbjct: 178 SLEVWTEKLTQLACSIVSERLAFIERLFVYIEPVYEQLGLGEVPGISYRSAAGRHANEIA 237 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L ++ + + +++L GPHR DL+ + D + + S G+ + L+ + Sbjct: 238 PEELFSFMMQRFREIEHQEIFRKQSLAGPHRDDLVFRFNDTDVK-KYASQGQLRTFLIAV 296 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 LA L+S+TTG P+ LLD++ + LD + + + G Q +T TD+ Sbjct: 297 KLALHTLVSDTTGERPLFLLDDLFSELDGTRIEKILEQLEGAG-QSIITATDR 348 >gi|241668638|ref|ZP_04756216.1| DNA replication and repair protein RecF [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877171|ref|ZP_05249881.1| DNA replication and repair protein recF [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843192|gb|EET21606.1| DNA replication and repair protein recF [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 349 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 90/364 (24%), Positives = 157/364 (43%), Gaps = 16/364 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN F VG NG GKT+ILE+I FLS R FR + + Sbjct: 1 MYIANLRLQNFRNIPIKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F E + +S R S ++N + + E+ + L I Sbjct: 61 INHDSDEFIVYTKAYNPDEVVISLS-----RKKNSNNISKLNSEIQKNHTEITRVLPIQL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P I + + +R + LD F +D + + L++ RN L + Y ++ + Sbjct: 116 MNPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNYP-KAYIN 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 I+ ++ E ++ R L I E + + P +KL + F +S Sbjct: 175 GIDKKLCEFADILDYKRQAYFIKLKPKIYEVLS-QFNPDLKLDIDYFRGWNSHKS----- 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L + D+ T GPH++D+++ K I S G+QK+++ I LA Sbjct: 229 --LVQVLEESFDSDNRYNVTSHGPHKADIVLTINHKPIQDIF-SRGQQKLLICAIKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAK 363 + ++ I L+D+I++ LD LF + ++ SQ+F+T T+K+ + D LN + Sbjct: 286 EIHNSENENKCIYLIDDITSELDNTHTKTLFSYLKNLKSQVFITTTEKNKIIDFLNLDSH 345 Query: 364 FMRI 367 + I Sbjct: 346 IIEI 349 >gi|255326479|ref|ZP_05367561.1| DNA replication and repair protein RecF [Rothia mucilaginosa ATCC 25296] gi|255296519|gb|EET75854.1| DNA replication and repair protein RecF [Rothia mucilaginosa ATCC 25296] Length = 409 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 88/388 (22%), Positives = 155/388 (39%), Gaps = 26/388 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I +++ ++R YA L L A T+F+G NGVGKTNI+EAI + + R + + Sbjct: 1 MYIDHISLLDYRTYALLSLPLSAGVTVFLGSNGVGKTNIVEAIDYAASLSSHRVSHDGPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + R + G + E +S R ++IN E R Sbjct: 61 VRAGAS---RAYIRTRTVRGSQQTVTEFEIAPGQSNR-VRINRAAPVRAKEALGIARTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P ++ G RRRF+D + ++ P ++ER++R RN LL + Sbjct: 117 FSPEDLQLVKGDPAGRRRFVDDLASSLRPVVSGYRSEYERILRQRNSLLKSMQRKARDEN 176 Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-------- 230 S S + Q++ LG ++ AR ++ + ++ Sbjct: 177 ALSTLSVWDEQLSTLGAQLLSARFRLLQRFLPQLRRAYAGLTDGSKEVGFNYESTVFSSM 236 Query: 231 ---FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 ++ LKE + + R+ + TL+GPHR D+ + + Sbjct: 237 GERSIEHAALMRIEDLKEALMRGFAERRRDEIERGVTLVGPHREDITLLLGGMPVK-HFA 295 Query: 288 STGEQKVVLVGIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 S GE + + LA + G +PIL+LD++ A LD +R+ L +V D Q Sbjct: 296 SHGESWSFALALKLASWFVHVEDDSSAGSSPILILDDVFAELDSARRHRLGVMVADAE-Q 354 Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372 + +T S + + ++ A Sbjct: 355 VLITCAVLSDIPEELGDYRLVSVTVGHA 382 >gi|167644130|ref|YP_001681793.1| recombination protein F [Caulobacter sp. K31] gi|259563357|sp|B0T360|RECF_CAUSK RecName: Full=DNA replication and repair protein recF gi|167346560|gb|ABZ69295.1| SMC domain protein [Caulobacter sp. K31] Length = 392 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 133/385 (34%), Positives = 196/385 (50%), Gaps = 21/385 (5%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R + L +++FR+Y L D G NG GKTN+LEAIS LSPG+G R +S Sbjct: 2 SRAALLSLTLTDFRSYERATLRPDGASVYLFGANGAGKTNLLEAISLLSPGKGLRGSSLI 61 Query: 63 DVTRI--GSPS--FFSTFARVE------GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 +V R G + ++ A E G + + +E + R ++I+ + Sbjct: 62 EVGRRLPGEATGRAWAVAAETEAPQTDFGQDEPVRLGTGVELAGA-ARRIVRIDGETV-P 119 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 L H+R WL P+ DR+F + ERRRF DR+VFA +P H +++ R R RL Sbjct: 120 PGRLADHVRPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPAHAGHANAYDKAQRERMRL 179 Query: 173 LTEG-----YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 LT+ D+ W +++EA++ G + AR + AL + I + FP +L+ Sbjct: 180 LTDAAESGQPADAVWLTALEARLGAAGALMANARARTLMALQAEIDSRGDR-PFPRARLA 238 Query: 228 LTGFLD--GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 LTG + ++ A L R D + R L GPHR DL + + DK A Sbjct: 239 LTGEWEKLALVGVEIAEIEARLAAALAAARPRDGAAGRALTGPHRGDLAIHHVDKDRPAA 298 Query: 286 HGSTGEQKVVLVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 STGEQK +++ + LA ARL PILLLDE++AHLD +R AL +T +G Q Sbjct: 299 ECSTGEQKALILNLVLAQAARLSRAKDAPNPILLLDEVAAHLDLKRRAALADEITALGLQ 358 Query: 345 IFMTGTDKSVFDSLNETAKFMRISN 369 F+TGTD+S+FD L A +R+S Sbjct: 359 AFLTGTDQSLFDHLKGRALGVRVSE 383 >gi|162446892|ref|YP_001620024.1| DNA replication and repair protein [Acholeplasma laidlawii PG-8A] gi|189039616|sp|A9NE68|RECF_ACHLI RecName: Full=DNA replication and repair protein recF gi|161984999|gb|ABX80648.1| DNA replication and repair protein [Acholeplasma laidlawii PG-8A] Length = 349 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 83/346 (23%), Positives = 151/346 (43%), Gaps = 23/346 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + FRN + +++ + I G NGVGKT+ILE+I F + + R + D+ + Sbjct: 2 ITSIELRNFRNLENYKVLINKPLVIIQGLNGVGKTSILESIYFAATTKSHRSSVEKDMIQ 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P +A V+ +E I L R+ IN +R + + LR+ Sbjct: 62 YDKP-----YASVKLIEDSKLHEIVLTPNGKRTT----INKSEVRKISDYIGQLRVVMFA 112 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--FDSSWCS 184 P + G ERR FLD + + + R + ++++++ RN LL + D ++ + Sbjct: 113 PEDLMLIKGSPSERRYFLDMELMQVSKTYLRNLNSYKKILKQRNALLKKNRNLTDYTFLN 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+ ++G++I R + I AL+ K F + + K Sbjct: 173 ILGEQLYDVGIQIFDERQKFIEALNQKFKTIQTK---------YKDF-EVEMLYEPNVTK 222 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + K L +K D M T G H+ D + Y + S G +++++ + LA Sbjct: 223 ENFLKHLKTKQKQDIMYETTTAGIHKDDFKLLYKGLNAKDS-ASQGTSRLIVIELKLALL 281 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 I T ILLLD++ + LD +++N ++ Q+F+T Sbjct: 282 EWIKEVTKTDAILLLDDVLSELDLERQNLFMSQLSK-NHQVFITTA 326 >gi|40017|emb|CAA26220.1| unnamed protein product [Bacillus subtilis] Length = 323 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 130/326 (39%), Gaps = 14/326 (4%) Query: 52 PGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111 + R ++ ++ R +A++EG + +I ++ + + ++N + + Sbjct: 1 MAKSHRTSNDKELIRWDKD-----YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQ 55 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 + + L P + G RRRFLD + + P + + +++++ RN Sbjct: 56 KLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNH 115 Query: 172 LLT----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 L D + + Q+ E+ K+ + R++ L + +L+ Sbjct: 116 FLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELT 175 Query: 228 LTGF--LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 L LD + + Y + R+ + TL GPHR D++ + + Sbjct: 176 LKYHTALDVSDPLDLSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDV-QT 234 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 +GS G+Q+ + + LA LI G PILLLD++ + LD+ +++ L + Q Sbjct: 235 YGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQT 293 Query: 346 FMTGTDKSVFD-SLNETAKFMRISNH 370 F+T T D A R+ N Sbjct: 294 FVTTTSVDGIDHETLRQAGMFRVQNG 319 >gi|313887210|ref|ZP_07820906.1| DNA replication and repair protein RecF [Porphyromonas asaccharolytica PR426713P-I] gi|332300489|ref|YP_004442410.1| DNA replication and repair protein recF [Porphyromonas asaccharolytica DSM 20707] gi|312923439|gb|EFR34252.1| DNA replication and repair protein RecF [Porphyromonas asaccharolytica PR426713P-I] gi|332177552|gb|AEE13242.1| DNA replication and repair protein recF [Porphyromonas asaccharolytica DSM 20707] Length = 371 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 155/375 (41%), Gaps = 21/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ F+N A+ F + F G NG+GKTN+L+AI +LS RG + Sbjct: 1 MILSSLSVINFKNVATANCHFAPKLNCFFGGNGMGKTNLLDAIHYLSVVRGHLGTTDRYA 60 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G+ + +G E + I E + L N + + + + Sbjct: 61 IRQGAQEAIIQGEYLWDDGQEDKISLRISTERS-----KQLSRNGRLYKRHSDHIGRYPL 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + P R+ G S ERRR +DR++ D + +I++ R + RN +L + + Sbjct: 116 VIISPHDQRLIRGGSDERRRSVDRILSQQDATYLANLINYNRALDQRNNMLRNQIHEPAL 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 +E +A G+ + R + L + Q + L+ F + Sbjct: 176 MDILEETLATTGLAVTTMRQAYVEELVPTFDQIYQHLAAGVERAVLS------FSAGSAS 229 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EE + L +GR+ D T G HR D + + + GS G+ K L+ LA Sbjct: 230 TAEEQLRILRNGRQRDYEYGFTATGCHRDDFEMLLGEILMR-KIGSEGQNKTYLIAYKLA 288 Query: 303 HARLISNT--TGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSLN 359 R + AP+LLLD+I LD D+ + +V TD QIF+T T++ D + Sbjct: 289 EYRYLQQHLTNQTAPLLLLDDIFDKLDSDRVERIIELVATDTFGQIFITDTNRKYLDEII 348 Query: 360 ETAKF----MRISNH 370 + + +I Sbjct: 349 SSKQVPYRLFQIQKG 363 >gi|119491644|ref|ZP_01623516.1| recombination protein F [Lyngbya sp. PCC 8106] gi|119453373|gb|EAW34537.1| recombination protein F [Lyngbya sp. PCC 8106] Length = 390 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 91/392 (23%), Positives = 172/392 (43%), Gaps = 30/392 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ +FRNY ++ FDA TI VGDN GK+N+LEA+ LS + R + ++ Sbjct: 1 MYLKTLHLKQFRNYRDQKVAFDAPKTILVGDNAQGKSNLLEAVELLSTLKSHRVSRDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +E G ++ + L + R + +N +R + L + Sbjct: 61 ILDTQDNG-QITGNLERETGHIELGLILR---SKGRRTVLLNRQSLRRQLDFLSILNVVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 + G RR ++DR++ I+P + + + +++R RN LL + S Sbjct: 117 FSSLDLELVRGSPERRRSWIDRLLVQIEPVYAYILQQYYQVLRQRNALLKKARSQSHSPG 176 Query: 181 ----------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 S + +AQ+A G ++ R ++ L L + + L LT Sbjct: 177 EEQPQKQILNSELAVWDAQLAVSGARVIRRRDRVLERLIPLAQTWHHLISGSTENLQLTY 236 Query: 231 FLDGKF---------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 + + S +++ + +K+ + TL+GPHR D+I ++ Sbjct: 237 QPNVQVIAAENTRLSALSPQDVQQAFLQKISTRTLAEHQQGTTLVGPHRDDIIFTI-NQT 295 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 +GS+G+Q+ +++ + LA +LI G P+LLLD++ A LD ++N L + D Sbjct: 296 PARQYGSSGQQRTLVLALKLAELQLIEAVIGEPPLLLLDDVLAELDLSRQNQLLEAIGD- 354 Query: 342 GSQIFMTGTDKSVFDS-LNETAKFMRISNHQA 372 Q +T T FDS + + + + + Sbjct: 355 RFQTLITTTHLGAFDSQWLQQTQILSVQAGKI 386 >gi|82523805|emb|CAI78548.1| DNA replication and repair protein RecF [uncultured Chloroflexi bacterium] Length = 409 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 86/404 (21%), Positives = 156/404 (38%), Gaps = 40/404 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+++ FRN+ L L + VGDN GKT++LEA+ +L+ F +S + Sbjct: 1 MYLTHLSLTNFRNFTRLDLDVPKGSILLVGDNAQGKTSLLEAVYYLATLVSFHASSDRQL 60 Query: 65 TRIGSP----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--------- 111 + A + I+L ++ L N +R Sbjct: 61 INFIEARQPLAVARIVADFSRGTNRHHLEIRL-IQESNGQTSLNGNSTHVRKEVLLDGVK 119 Query: 112 -VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 +P M + G ERRR+L+ + + + + ++ + + RN Sbjct: 120 CKASTAVGQFNAVLFLPQMLGVIEGSPEERRRYLNLALAQVIAHYPAALSEYTKALSQRN 179 Query: 171 RLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 LL E D + + Q+ G ++ AR+ + L L + ++ L Sbjct: 180 ALLKLLNERQGDPAQLDYWDEQIVSNGAQLIYARIHAVQELERLAVRTHRELTRGAEVLR 239 Query: 228 LTGF----------------LDGKFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 L LD D+S +++ +A+ L R + T IGP Sbjct: 240 LNYQPSYDPFPVQPGQYALPLDSPVDRSGLTLEGIQQGFAENLNKLRPEEIARGVTTIGP 299 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR +L + +GS G+ + ++ + +A + + +G P+LLLDE+ A LD Sbjct: 300 HRDELRF-LANGIDLGTYGSRGQVRTAMLSLKIAEVGWMHHKSGQWPVLLLDEVLAELDA 358 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETAKFMRISNHQ 371 ++R L +T Q +T TD +F S E A + + Sbjct: 359 NRRQDLLERLTQ-SEQALLTTTDLDLFSSEFVERATRWSVHEGR 401 >gi|256424433|ref|YP_003125086.1| DNA replication and repair protein RecF [Chitinophaga pinensis DSM 2588] gi|256039341|gb|ACU62885.1| DNA replication and repair protein RecF [Chitinophaga pinensis DSM 2588] Length = 360 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 155/367 (42%), Gaps = 20/367 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K +++ +F+NY+ F + G NG GKTN+L+AI ++ + + +S A T+ Sbjct: 4 LKKISLVQFKNYSGKSFSFHKRIVGITGRNGSGKTNLLDAIYYICFTKSYFTSSEAQNTQ 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F R+EG K+ + +ND + + Sbjct: 64 YQTNGF-----RLEGFMDRDHQEGKIVCTLKDGKKEFALNDEAYERFSQHIGRYPAVMIA 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSW 182 P I G S ERR++LD ++ + P + +I ++++++ +N LL +G + Sbjct: 119 PDDAEIILGGSEERRKWLDALLCQLHPGYLDHLITYQKILQQKNTLLKTMNGQGGSQDTL 178 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + Q+ + G + R + + + H +++ Sbjct: 179 LDIFDEQLVKHGTPVFEWRRAFLPGFIQQVQKLYDYLAGKHETVNIQYQSGLH------- 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++ + + L R D M +RT G H+ DL D + + S G++K L + LA Sbjct: 232 -EQTFTELLAANRYKDMMMQRTTGGIHKDDLQFVLDDHPMKTS-ASQGQRKSFLFALKLA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKS-VFDSLNE 360 +I F P+LLLD++ LD+D+ + L +V+ + Q+F+T T + + E Sbjct: 290 QFEVIKEHKKFPPLLLLDDVFEKLDQDRVSRLINLVSSPVYGQVFITDTHADRILAAFKE 349 Query: 361 TAKFMRI 367 + ++ Sbjct: 350 NSDNFQL 356 >gi|117927214|ref|YP_871765.1| recombination protein F [Acidothermus cellulolyticus 11B] gi|166220694|sp|A0LQR9|RECF_ACIC1 RecName: Full=DNA replication and repair protein recF gi|117647677|gb|ABK51779.1| DNA replication and repair protein RecF [Acidothermus cellulolyticus 11B] Length = 371 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 83/361 (22%), Positives = 147/361 (40%), Gaps = 15/361 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FR+Y L D +FVG NG GKTN++EA+ +L+ R R A+ A + Sbjct: 1 MYLSRLELTDFRSYRRAALELDPGVNVFVGSNGQGKTNLVEAVCYLALLRSHRTATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS E + I + +E R+ R L++N R +L LR+ Sbjct: 61 VRQGSE---RAVLHGEVLTSGRRIDLDVEIVPGRANR-LRVNGHATRRARDLVGILRVVI 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GYFD 179 P + G RR +LD ++ + PR ++E+ +R RN L D Sbjct: 117 FAPEDLALVKGDPAARRDYLDDVLVELRPRLFAVRAEYEKALRQRNAFLRAVAQDGQQVD 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + A + AR +++ L+ + + + + L + Sbjct: 177 RNSLDVWNLHFARAAAALLDARRRLVHELAPFVEKAYAAISGGSGAVRLEYRSTVPEEVL 236 Query: 240 FCALKEE----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 A +E L + + TL+GPHR DL ++ D + S GE Sbjct: 237 QDADEETRIAGILAALRKVQDAELARGLTLVGPHRDDLNLEL-DSRPARGYASHGESWSY 295 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + + L L+ + G P+++LD++ A LD+ +R L V+ + + D+ Sbjct: 296 ALALRLGAYELL-RSDGETPVMILDDVYAELDQQRRRRLTGCVSGAEQLLITSAVDEPDL 354 Query: 356 D 356 Sbjct: 355 P 355 >gi|237802507|ref|YP_002887701.1| recombination protein F [Chlamydia trachomatis B/Jali20/OT] gi|231273741|emb|CAX10521.1| DNA replication and repair protein [Chlamydia trachomatis B/Jali20/OT] Length = 365 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 151/371 (40%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY LRL + G N GKTN+LEA+ LS GR FR + D Sbjct: 1 MRVHSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF +E + ++ L + D+ + + + I + EL + Sbjct: 61 IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 I G ERRRFLD ++ ++ + + + + RN + + S Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQNQKA--IS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + G + R E L+++ + L L + + + Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y ++L D T++GPHR +L++ D + S G++ +L + A Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPV-AKFSSEGQKHSLLAVLRFAEC 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + PIL +D+I A LD+ + + L ++ +G Q+ T T D + T+ Sbjct: 293 VYLQEEFCIHPILCMDDIHACLDQQRLDQLLQLSNSLG-QVVTTST--ICPDHRSTTSCI 349 Query: 365 MRISNHQALCI 375 ++ Q + Sbjct: 350 FHVTQAQVSLV 360 >gi|167628098|ref|YP_001678598.1| DNA replication and repair protein RecF [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|259563369|sp|B0U178|RECF_FRAP2 RecName: Full=DNA replication and repair protein recF gi|167598099|gb|ABZ88097.1| DNA replication and repair protein RecF [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 349 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 157/364 (43%), Gaps = 16/364 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN F VG NG GKT+ILE+I FLS R FR + + Sbjct: 1 MYIANLRLQNFRNIPIKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F E + +S R S ++N + + E+ + L I Sbjct: 61 INHDSDEFIVYTKAYNPDEVVISLS-----RKKNSNNISKLNSEIQKNHTEITRVLPIQL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P I + + +R + LD F +D + + L++ RN L + Y ++ + Sbjct: 116 MNPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNYP-KAYIN 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 I+ ++ E ++ R L I E + + P +KL + F +S Sbjct: 175 GIDKKLCEFADILDYKRQAYFIKLKPKIYEVLS-QFNPDLKLDIDYFRGWNSHKS----- 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L + D+ T GPH++D+++ K I S G+QK+++ I LA Sbjct: 229 --LVQVLEESFDSDNRYNVTNHGPHKADIVLTINHKPIQDIF-SRGQQKLLICAIKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAK 363 + ++ I L+D+I++ LD LF + ++ SQ+F+T T+++ + D L+ + Sbjct: 286 EIHNSENENKCIYLIDDITSELDNTHTKTLFSYLKNLKSQVFITTTEENKIIDFLDLDSH 345 Query: 364 FMRI 367 + I Sbjct: 346 IIEI 349 >gi|28197948|ref|NP_778262.1| recombination protein F [Xylella fastidiosa Temecula1] gi|182680575|ref|YP_001828735.1| recombination protein F [Xylella fastidiosa M23] gi|32129956|sp|Q87FC4|RECF_XYLFT RecName: Full=DNA replication and repair protein recF gi|226737849|sp|B2I5U9|RECF_XYLF2 RecName: Full=DNA replication and repair protein recF gi|28056008|gb|AAO27911.1| DNA replication and repair RecF protein [Xylella fastidiosa Temecula1] gi|182630685|gb|ACB91461.1| DNA replication and repair protein RecF [Xylella fastidiosa M23] gi|307579029|gb|ADN62998.1| recombination protein F [Xylella fastidiosa subsp. fastidiosa GB514] Length = 364 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 155/374 (41%), Gaps = 20/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FR + + F+G+NG GKT++LEA+ + GR FR + Sbjct: 1 MHITQLVLRHFRCFDVVDFFPLPGLNFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGL 60 Query: 65 TRIGSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 R GS + + A + A +S +++ I + L Sbjct: 61 IRHGSENLEIFVDWQETALINARRRRAGLSHY------GQEWIGRLDGQKIMHLASLCAA 114 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 L + S ++ + + RRRFLD +F ++P + +++ RN LL + + Sbjct: 115 LAVITFESSSYQLINSNAELRRRFLDWGLFHVEPDFLDLWRRYTHVLKQRNSLLKQ-KEE 173 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + + +++E+G ++ R + + L ++ + + P++K+ F G Sbjct: 174 LAMLEAWDQKLSEVGEQLTFRRFQYLERLKQRVIPLISRIT-PNLKIHGFNFNHGWRRHE 232 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 LF R+ D T +GPHRSD + + S G+ K++ + Sbjct: 233 LP-----LIDALFISRERDYQYGYTSLGPHRSDWTPQFSSIP-GVHFLSRGQGKLITLMC 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSL 358 LA A+ + G PIL LD++++ LD+ + + ++ +I +Q+ +TGT+ Sbjct: 287 LLAQAQDFFDQRGEWPILALDDLASELDQKHQWRVLEMLAEIPAQVLITGTEIPQGLKPF 346 Query: 359 NETAKFMRISNHQA 372 + + Sbjct: 347 FSVGAMFHVEHGAI 360 >gi|1049325|gb|AAB51449.1| RecF [Caulobacter crescentus CB15] Length = 388 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 128/379 (33%), Positives = 196/379 (51%), Gaps = 17/379 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 + L +++FR+Y RL + G NG GKTN+LEAIS LSPG+G R S A+V Sbjct: 5 ALLSLTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGKGLRGVSLAEVG 64 Query: 66 RI--GSP--SFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R G ++ A V+ G + I +E + + R +++ + L H+ Sbjct: 65 RRLPGEAVGRAWAVAAEVQSGEDAPVRIGTGVE-QGGAARRTVRLEGETV-PPGRLADHV 122 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG------RNRLLT 174 R WL P+ DR+F + ERRRF DR+VFA +P H +++ R R R Sbjct: 123 RPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPAHAANANGYDKAQRRAYAPACRRRRNG 182 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD- 233 D++W +++EA++AE G + AR + AL + I + FP +L LTG + Sbjct: 183 RAPADAAWLTALEARLAEFGALLAQARARTLLALQAEIDGRGDR-PFPLARLGLTGEWER 241 Query: 234 -GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 F ++ + A+ L R D + R L GPHR DL + + +K A STGEQ Sbjct: 242 MAVEGAPFAEIELKLAQALASARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQ 301 Query: 293 KVVLVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 K +++ + LA ARL + P++LLDE++AHLD +R AL +T + Q F+TGTD Sbjct: 302 KALILNLVLAQAARLSRAESAPNPVILLDEVAAHLDLTRRAALADELTALKLQAFLTGTD 361 Query: 352 KSVFDSLNETAKFMRISNH 370 +S+FD L A +R+ + Sbjct: 362 ESLFDHLKGRALGVRVGDA 380 >gi|119355860|ref|YP_910504.1| DNA replication and repair protein RecF [Chlorobium phaeobacteroides DSM 266] gi|119353209|gb|ABL64080.1| DNA replication and repair protein RecF [Chlorobium phaeobacteroides DSM 266] Length = 365 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 86/351 (24%), Positives = 160/351 (45%), Gaps = 10/351 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + + FRNY + +A T+ G NG GKTNILE I + + +GF + +D Sbjct: 1 MRLTRITYNNFRNYRKMTFEPNAGITLLYGSNGSGKTNILEGIHYCALTKGFTSIADSDC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S +++ + G G +DI +++ ++ + L +N+ I+ + Sbjct: 61 I-FDSSDYYALQSTCLGENG-SDIEVRISFSREKG-KTLFVNNNEIKKFSNHVGTIPCIT 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181 P I SG ERR+F+D ++ D ++ + ++ + R++ RN LL + S Sbjct: 118 FSPPEISIVSGSPSERRKFIDNIICQSDKKYLKDLLTYRRVLLQRNALLAQISEKKSSIN 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QS 239 ++ L I R+E ++ + +K + + + G++D ++ Sbjct: 178 MLPYWSENLSVLAASIVFKRLEFLDKFIDNFRDLFKKLSINEEPGIVYRSVLGRYDNIRN 237 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 L Y +K D + + + +T GPHR DL DK I + S G+ + L+G+ Sbjct: 238 IDELAALYYRKYDDNLRYELLRSQTSCGPHRDDLEFYINDKEIK-KYASQGQLRTFLIGL 296 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 LA + +TT PI LLD+I + LD + + I+ +G Q +T T Sbjct: 297 KLAVYDYLFDTTHEKPICLLDDIFSELDTQRTENILSILQTLG-QSIITST 346 >gi|307825354|ref|ZP_07655573.1| DNA replication and repair protein RecF [Methylobacter tundripaludum SV96] gi|307733529|gb|EFO04387.1| DNA replication and repair protein RecF [Methylobacter tundripaludum SV96] Length = 358 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 76/374 (20%), Positives = 150/374 (40%), Gaps = 19/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I RN +V + +G+N GK+ ++EAI L + FR ++ V Sbjct: 1 MSLLKLDIYGVRNIQKESIVPSPAINLIIGENASGKSTLIEAIFILGRAKSFRSSAIKSV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + V+ + I+L D ++IN + +L L + Sbjct: 61 INFTQNHLVVSAQTVQENGSHLHLGIQL----DGKNIEIRINQQSKQKRSDLAYALPLQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + S RR FLD VF D F++ + RN LL + Sbjct: 117 IHPKSYELLDAGSQIRREFLDWGVFNNDQNFLPAWRKFKKALSQRNALLKTRRL--EQIN 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ G ++ R + + + +E + + + L L D Sbjct: 175 VWDNELVYYGTIVDSYRQQYLEKFKPVFIEIIGRFLALDGLDLRLVSGWD---------T 225 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E+++ L + + D T GPHR D + ++ I S G+ K++++ + LA Sbjct: 226 AKEFSRVLIEDQDKDLRYGFTHSGPHRGDFQLLVNNR-IAKDFVSRGQLKLLVMSLKLAQ 284 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--T 361 +L++N +L+D+ +A LD R L ++++ Q+F+T T+ F L++ Sbjct: 285 VQLLANEQSQTGCILIDDFAAELDVVNRAKLLHYLSEMACQVFITATETQDFGDLSQIKN 344 Query: 362 AKFMRISNHQALCI 375 K + + + Sbjct: 345 YKMFHVEHGTIKPV 358 >gi|47093015|ref|ZP_00230794.1| DNA replication and repair protein RecF [Listeria monocytogenes str. 4b H7858] gi|47018583|gb|EAL09337.1| DNA replication and repair protein RecF [Listeria monocytogenes str. 4b H7858] gi|328468326|gb|EGF39332.1| recombination protein F [Listeria monocytogenes 1816] Length = 326 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 131/330 (39%), Gaps = 13/330 (3%) Query: 49 FLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 L+ + R + D A++EG S+ LE + + ++N + Sbjct: 1 MLALAKSHRTTNDKDFIMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHL 55 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + + + +L + P + G RRRFL+ + + P + + +++R+++ Sbjct: 56 EQKKLSQYVGNLNVVIFAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQ 115 Query: 169 RNRLLT----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 RN+ L + D + Q A++ + + R + I L + + + Sbjct: 116 RNQYLKMLQMKRKVDPILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLE 175 Query: 225 KLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 L + + K + +K+ ++ + TLIGPHR D + + + Sbjct: 176 TLKIEYKASITLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV- 234 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 GS G+Q+ + I LA LI TG P+LLLD++ + LD+ +++ L + Sbjct: 235 QDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-V 293 Query: 344 QIFMTGTDKSVFD-SLNETAKFMRISNHQA 372 Q F+T T S D + A + Sbjct: 294 QTFVTTTSTSGIDHETLKQATTFYVEKGTV 323 >gi|253582582|ref|ZP_04859803.1| DNA replication and repair protein recF [Fusobacterium varium ATCC 27725] gi|251835452|gb|EES63992.1| DNA replication and repair protein recF [Fusobacterium varium ATCC 27725] Length = 375 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 69/370 (18%), Positives = 155/370 (41%), Gaps = 13/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I +N FRN + F + +F G NG GKT++LEA+ F S G+ FR +++ Sbjct: 1 MEILEINYVNFRNLQDGNVKFFPKMNLFYGKNGQGKTSLLEALYFNSTGKSFRTTKSSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + + G +++K D + N + DE L + Sbjct: 61 MKYGYKR-TGVYVVYKDNIGEKTLTVKFNNEDKKE---YSYNGKRV-QYDEFYGKLNVVT 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F D + + + + +F ++++ RN+ L E + Sbjct: 116 YIPEDIVLITGSPSVRRNFFDGEIAQTSSEYFQELKNFNKILKIRNKYLKEKKHKEPEFT 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCA 242 + + + G K+ R+E + +S ++ +K + + L S Sbjct: 176 IYQDEFIKYGAKVIEKRMEYVKKISIILNLNYRKLFDDKKELSIQYQCHLGNIKKMSLRE 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ K+ + + +L GP + D + + S GE+K ++ + L+ Sbjct: 236 IEDALRKRTEEKLGQELRYGFSLSGPQKDDFLFFLNSYEAK-STASQGEKKSIIFSLKLS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++ +PIL++D+IS++ D ++++++ + Q+F++ T + L + Sbjct: 295 EIDMVLREKKESPILIIDDISSYFDSNRKDSILNYLEKRNIQVFISSTGE-----LGINS 349 Query: 363 KFMRISNHQA 372 + + + Sbjct: 350 ENFYVEKGEI 359 >gi|22299987|ref|NP_683234.1| recombination protein F [Thermosynechococcus elongatus BP-1] gi|51316460|sp|Q8DG79|RECF_THEEB RecName: Full=DNA replication and repair protein recF gi|22296172|dbj|BAC09996.1| DNA repair and genetic recombination protein [Thermosynechococcus elongatus BP-1] Length = 379 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 176/376 (46%), Gaps = 11/376 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ FRNY+ + F A TI VGDN GK+N+LEA+ +L+ + R D+ Sbjct: 1 MFLKSLHLRHFRNYSEQSVTFAAPKTILVGDNAQGKSNLLEAVEWLATLQSHRTHRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G S A +E D+++ L S R L++N ++ + L Sbjct: 61 IQQGHESA-QIEATLERQGVPLDLAVSLRPS---SGRVLRVNGCTVKRTADFLGQLNAVE 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSS 181 + G RR +LDR++ ++P + + + +++ +R RN LL + D + Sbjct: 117 FSCLDLELVRGTPAIRRNWLDRILLQLEPLYSQLLQTYQKALRQRNALLKQAGSQGWDEA 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSF 240 + Q+ G +I R +I L+ L ++ + + L+L+ D + Sbjct: 177 LWQAWNQQLVINGTRIIRRRQRLIERLAPLAQDWHRVLSGDRETLTLSYESHVPLGDGTS 236 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A+ +++ L R ++ + + +L+GPHR D+ ++ S G+Q+ +++ + Sbjct: 237 EAIVAAFSEALATRRAIEFLQKTSLVGPHRDDVGFCLNAQS-ARQFASQGQQRTLVLALK 295 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LN 359 LA L+ + G P+LLLD++ A LD ++ L ++ D Q MT T + F + Sbjct: 296 LAELALVESVVGDTPLLLLDDVLAELDLQRQGILLEVMGD-RYQTLMTTTHLAPFAAPWR 354 Query: 360 ETAKFMRISNHQALCI 375 + A+ ++++ + Sbjct: 355 QQAQILKVTAGTIASV 370 >gi|20806546|ref|NP_621717.1| recombinational DNA repair ATPase [Thermoanaerobacter tengcongensis MB4] gi|254478930|ref|ZP_05092292.1| RecF/RecN/SMC N terminal domain, putative [Carboxydibrachium pacificum DSM 12653] gi|51316490|sp|Q8RDL3|RECF_THETN RecName: Full=DNA replication and repair protein recF gi|20514983|gb|AAM23321.1| Recombinational DNA repair ATPase [Thermoanaerobacter tengcongensis MB4] gi|214035152|gb|EEB75864.1| RecF/RecN/SMC N terminal domain, putative [Carboxydibrachium pacificum DSM 12653] Length = 364 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 73/355 (20%), Positives = 152/355 (42%), Gaps = 9/355 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + FRN +L F + G N GK+N+LEAI LS GR FR + +++ Sbjct: 1 MYLKEIFVDNFRNLKKQKLEFCEGVNLIYGLNAQGKSNLLEAIRLLSMGRSFRGSKMSEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F+ I + + +++N ++ E+ H Sbjct: 61 VKFDEEYFYVRGLVRSADFYEKKIEFGYKVNG---NKVIKVNGNKLKSTGEILGHFLTVI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181 P I RR++LD + ID + ++ + + + RN LL + + Sbjct: 118 FSPEDIEIIKEGPSRRRKYLDACISVIDKNYFFDLLQYNKTLSNRNSLLKKIKEEGKGED 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + ++AE G +I R + L + + +++ + + +++ K Sbjct: 178 LLEIFDEKLAEYGARIIKVRNNYLEKLKNSMSKFLMEISNEKLEIIYLNSAGVKEVHEEN 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 ++E+ +L +D T +GPHR D + + + + S G+++ + + L Sbjct: 238 LIREKLKNRLTKSLTLDLKYLSTQVGPHREDFKI-LINGYDSRVYSSQGQKRTAALCLKL 296 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + ++ TG P+LLLD++ + LD++++ + + + G Q F+T T KS + Sbjct: 297 SELEILEEETGEKPVLLLDDVMSELDDNRKKYILKKLE--GFQSFITHTSKSDVE 349 >gi|148927269|ref|ZP_01810839.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] gi|147887328|gb|EDK72782.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] Length = 351 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 81/346 (23%), Positives = 146/346 (42%), Gaps = 13/346 (3%) Query: 9 FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68 L + +FR+Y + TI G NG GKTN+LEA+ L+ G FR AS ++ +IG Sbjct: 4 SLRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSFR-ASDQELGQIG 62 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 ++ AR+ E SI E + ++ V + + L + P Sbjct: 63 MD-WWRLDARLVANESR---SILFEAEKTTGRKTFILDGVKKQRLT-YQHKLPVVLFEPG 117 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ G RR F+D ++ ++P + + ++R+++ RN LL + + Sbjct: 118 DLRLLHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDV 177 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 ++E G +I R + L++ + E + +SL F + ++++ Sbjct: 178 ALSEYGARIVAERQKYSALLNASLRERYRAIAHTKDIVSLAYS----FQEGAESVQQAMV 233 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 L D T +GPHR DLI D + S GE + + + ++ Sbjct: 234 SALHAHHVRDKALGYTTVGPHRHDLIFSMND-VEATSIASRGETRXXXLALKFIEVEMLR 292 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 P+LLLD++ + LD +R AL + +Q +T T+ + Sbjct: 293 VYRDQPPLLLLDDVFSELDSTRRMALVEV--GSSTQTVITTTNADI 336 >gi|294675560|ref|YP_003576175.1| DNA replication and repair protein RecF [Rhodobacter capsulatus SB 1003] gi|294474380|gb|ADE83768.1| DNA replication and repair protein RecF [Rhodobacter capsulatus SB 1003] Length = 352 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 120/363 (33%), Positives = 185/363 (50%), Gaps = 24/363 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +FR++ L DA+ G NG GKT++LEA+S LSPGRG RRAS ++ R Sbjct: 2 LRDLTLLQFRSHRRAVLALDARPVALYGPNGAGKTSVLEAVSLLSPGRGLRRASAEELIR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + A + D ++ + R + I+ V L + LR+ WLV Sbjct: 62 RQEQVGWKIRATL------TDYEVETSALPG-ASREVLIDGKAAAQVA-LGRLLRVLWLV 113 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P+MDR++ + RRRFLDRM + P H ++ +E+ MR RNRLL + D++W ++ Sbjct: 114 PAMDRLWIEAAEGRRRFLDRMTLSFFPTHAEAVLAYEKAMRERNRLLKDEIRDAAWYGAL 173 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MAE G + R + + L++ + L+ G E+ Sbjct: 174 ETRMAEAGALMTAHRRQALAQLATAQAGAATAFPAADLGLTAEG-------------PED 220 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 A L +GR+ D + RTL GPHR DL Y +KAI STGEQK +L+ Sbjct: 221 LATALAEGRRRDMAAGRTLEGPHRVDLTAVYAEKAIPADQCSTGEQKALLIS---LLLAN 277 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 G +LLLDE++AHLD +R AL+ + + +Q+ MTGT +FDSL E ++ + Sbjct: 278 ARALAGENTVLLLDEVAAHLDAGRRAALYDEICALPAQVLMTGTGAELFDSLGERGRYWQ 337 Query: 367 ISN 369 ++ Sbjct: 338 VTE 340 >gi|297621405|ref|YP_003709542.1| putative DNA replication and repair protein recF [Waddlia chondrophila WSU 86-1044] gi|297376706|gb|ADI38536.1| putative DNA replication and repair protein recF [Waddlia chondrophila WSU 86-1044] Length = 346 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 157/353 (44%), Gaps = 17/353 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++K L + FR+Y + F Q+ + +G N GKT ILEAI L GR FR + ++ Sbjct: 1 MQVKALLLRNFRSYEKAQFTFGPQNNLIIGPNARGKTTILEAIYLLITGRSFRSRNLDEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F+ VE + +I + ++ R + N R + +L L+ + Sbjct: 61 VREGESGFY-----VEALYENQEIDHSIRFIYEKRQRQIYTNRHPCRSLSDLIGQLQGAL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 ++P ++ G RR FLD + ++P + + + R M+ RN LL + Sbjct: 116 MLPDDVQLVKGAPSRRREFLDLQLAQMNPLYVHHLTRYSRAMQQRNTLLK--AQNEQAID 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 E +MA G + R +++ L+ + + +SL S L Sbjct: 174 LFEKEMAASGAYLIAERKRIVDLLAQDCARVQDRLSLGKETVSLDYLA----KHSPENLS 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+Y K RK + +LIGPH DL + D+ + S G++K + + A Sbjct: 230 EQYEKM----RKREMKMGFSLIGPHLDDLTLKLGDREARL-FASEGQKKSLTTALKFAEW 284 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 ++ + P++L+D++ LD +R L ++ D SQ+F+T T+ F S Sbjct: 285 IQLNTHSDSVPLMLIDDVGVSLDGGRRERLISLL-DTFSQVFVTSTEPLNFHS 336 >gi|332668536|ref|YP_004451543.1| DNA replication and repair protein RecF [Cellulomonas fimi ATCC 484] gi|332337573|gb|AEE44156.1| DNA replication and repair protein RecF [Cellulomonas fimi ATCC 484] Length = 423 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 91/413 (22%), Positives = 163/413 (39%), Gaps = 59/413 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA + L D T VG NG GKTN++EA+ +++ R S A + Sbjct: 1 MYVAHLSLTDFRSYAQVELPLDPGITALVGPNGQGKTNLVEAVGYVATLGSHRVPSDAAL 60 Query: 65 TRIGSPSFFSTFARVEGME--GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G+ V +E +++E ++ R R D L LR Sbjct: 61 VRAGASRAVVRTRVVRELEPGRPRTTLVEVEVTPGKANRARVNGGSPGRARDVL-GILRT 119 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------- 174 P + G RRRFLD ++ + PR+ + D+ER++R R+ LL Sbjct: 120 VLFAPEDLALVKGDPDGRRRFLDDLLVQLVPRYAGTVQDYERVLRQRSALLKTAGAAMRG 179 Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--- 230 G D +A++A+ G ++ +AR ++ AL+ + ++ + + LT Sbjct: 180 GRGAADLRTLDVWDAKLAQTGAELVVARRALVAALAPQVTSAYEQVSSGQGEAVLTYRAS 239 Query: 231 --------------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 G S ++ + + + R+ + L+GPHR DL++ Sbjct: 240 LDAALADAAAADPQAAPGDVPASPRLVETQLLEAMGRLRQKEVERGVCLVGPHRDDLVLT 299 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT-------------------------- 310 + S GE + + LA L+S Sbjct: 300 LGGLPAK-GYASHGESWSFALALRLASYALLSGAAGRPGDGTGDGGADPTAELLARGADW 358 Query: 311 -TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361 P+L+LD++ A LD +R+ L +V Q+ +T + V + L Sbjct: 359 GPDAEPVLVLDDVFAELDTRRRDRLAELVAPAR-QVLITAAVAQDVPEPLAGA 410 >gi|324999885|ref|ZP_08120997.1| recombination protein F [Pseudonocardia sp. P1] Length = 398 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 91/383 (23%), Positives = 157/383 (40%), Gaps = 34/383 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ +++FR++ L D T+ VG NGVGKTN++E I +L+ R +S + Sbjct: 1 MYLRRFAVTDFRSWPEAELELDPGVTVLVGSNGVGKTNLVEGIGYLASLGSHRVSSDTPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ R E + ++LE + R ++N + ++ LR Sbjct: 61 IRRGAEQAV---LRGEVHHHGRKLGVELEINSGKQNRA-RVNRSPVSRPRDVLGILRSVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G ERRRFLD ++ A PR+ D+E+++R R+ LL Sbjct: 117 FAPEDLALVRGDPSERRRFLDELLVARFPRYAGVRSDYEKVLRQRSALLKSAKPALRGPR 176 Query: 179 --------------DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFP 222 D + + +A G + R E++ AL+ E + + Sbjct: 177 GRARPAPADPDVPDDLTTLEVWDGHLARAGAALLAGRRELVVALAPYAREAFAQIAPSSD 236 Query: 223 HIKLSLTGFLD----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 I L L + L+ ++L + R + L+GPHR +L + Sbjct: 237 PIGLDYRSSLGPGGVAELPAPAEELEALLLERLAEVRTQEIERGVCLVGPHRDELDLALG 296 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 D + S GE + + LA RL+ P+L+LD++ A LD +R AL +V Sbjct: 297 DGPAK-GYASHGESWAFALALRLASYRLL-QADDVEPVLVLDDVFAELDSARRRALAGLV 354 Query: 339 TDIGSQIFMT-GTDKSVFDSLNE 360 D Q+ +T + V L+ Sbjct: 355 ADAE-QVLVTAAVGEDVPPELDG 376 >gi|255348438|ref|ZP_05380445.1| recombination protein F [Chlamydia trachomatis 70] gi|255502980|ref|ZP_05381370.1| recombination protein F [Chlamydia trachomatis 70s] gi|255506650|ref|ZP_05382289.1| recombination protein F [Chlamydia trachomatis D(s)2923] gi|296438380|gb|ADH20533.1| recombination protein F [Chlamydia trachomatis E/11023] Length = 365 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 152/371 (40%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY LRL + G N GKTN+LEA+ LS GR FR + D Sbjct: 1 MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF +E + ++ L + D+ + + + I + EL + Sbjct: 61 IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 I G ERRRFLD ++ ++ + + + + + RN + + S Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTQHISLYHKALDQRNASIKAQNQKA--IS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + G + R E L+++ + L L + + + Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y ++L D T++GPHR +L++ D + S G++ +L + A Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPV-AKFSSEGQKHSLLAVLRFAEC 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + PIL +D+I A LD+ + + L ++ +G Q+ T T D + T+ Sbjct: 293 VYLQEEFCIHPILCMDDIHACLDQQRLDQLLQLSNSLG-QVVTTST--ICPDHRSTTSCI 349 Query: 365 MRISNHQALCI 375 ++ Q + Sbjct: 350 FHVTQAQVSLV 360 >gi|328675921|gb|AEB28596.1| DNA recombination and repair protein RecF [Francisella cf. novicida 3523] Length = 349 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 87/361 (24%), Positives = 157/361 (43%), Gaps = 15/361 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FRN F VG NG GKT+ILE+I FLS R FR + + Sbjct: 1 MYISNLRLQNFRNIPFKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F +I+I L R S ++N + + E+ ++L I Sbjct: 61 VNHNADEFII----YTKAYNPDEITISLS-RKKNSNNISKLNLEIQKNHTEITRNLPIQL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P I + + +R + LD F +D + + L++ RN L + Y ++ Sbjct: 116 INPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNYP-YNYIL 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 SI+ +++E ++ R L + E + E P +KL + F ++ Sbjct: 175 SIDKKLSEFAEILDHKRQAYFTKLKPKVYEILA-EFNPELKLDIEYFRGWNSHKN----- 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L + D+ + T GPH++D+++ K I S G+QK+++ I LA Sbjct: 229 --LYQVLEESFNYDNKYKITNHGPHKADIVLSVNHKPIQDIF-SRGQQKLLICAIKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + + I L+D+I++ LD LF + + SQ+F+T T+K+ + +T + Sbjct: 286 EIHNLENYNKCIYLIDDITSELDNTHTQTLFNYLRQLKSQVFITTTEKNKINEFIDTNSY 345 Query: 365 M 365 + Sbjct: 346 I 346 >gi|76788787|ref|YP_327873.1| recombination protein F [Chlamydia trachomatis A/HAR-13] gi|237804423|ref|YP_002888577.1| recombination protein F [Chlamydia trachomatis B/TZ1A828/OT] gi|97180699|sp|Q3KMU7|RECF_CHLTA RecName: Full=DNA replication and repair protein recF gi|76167317|gb|AAX50325.1| RecF [Chlamydia trachomatis A/HAR-13] gi|231272723|emb|CAX09627.1| DNA replication and repair protein [Chlamydia trachomatis B/TZ1A828/OT] Length = 365 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 151/371 (40%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY LRL + G N GKTN+LEA+ LS GR FR + D Sbjct: 1 MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF +E + ++ L + D+ + + + I + EL + Sbjct: 61 IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 I G ERRRFLD ++ ++ + + + + RN + + S Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQNQKA--IS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + G + R E L+++ + L L + + + Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y ++L D T++GPHR +L++ D + S G++ +L + A Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPV-AKFSSEGQKHSLLAVLRFAEC 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + PIL +D+I A LD+ + + L ++ +G Q+ T T D + T+ Sbjct: 293 VYLQEEFCIHPILCMDDIHACLDQQRLDQLLQLSNSLG-QVVTTST--ICPDHRSTTSCI 349 Query: 365 MRISNHQALCI 375 ++ Q + Sbjct: 350 FHVTQAQVSLV 360 >gi|289525119|emb|CBJ14590.1| DNA replication and repair protein [Chlamydia trachomatis Sweden2] gi|296434663|gb|ADH16841.1| recombination protein F [Chlamydia trachomatis E/150] Length = 365 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 151/371 (40%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY LRL G N GKTN+LEA+ LS GR FR + D Sbjct: 1 MRVLSLFLKDFRNYTDLRLELGPDMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF +E + ++ L + D+ + + + I + EL + Sbjct: 61 IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 I G ERRRFLD ++ ++ + + + + + RN + + S Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTQHISLYHKALDQRNASIKAQNQKA--IS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + G + R E L+++ + L L + + + Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y ++L D T++GPHR +L++ D + S G++ +L + A Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPV-AKFSSEGQKHSLLAVLRFAEC 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + PIL +D+I A LD+ + + L ++ +G Q+ T T D + T+ Sbjct: 293 VYLQEEFCIHPILCMDDIHACLDQQRLDQLLQLSNSLG-QVVTTST--ICPDHRSTTSCI 349 Query: 365 MRISNHQALCI 375 ++ Q + Sbjct: 350 FHVTQAQVSLV 360 >gi|255037634|ref|YP_003088255.1| DNA replication and repair protein RecF [Dyadobacter fermentans DSM 18053] gi|254950390|gb|ACT95090.1| DNA replication and repair protein RecF [Dyadobacter fermentans DSM 18053] Length = 365 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 77/374 (20%), Positives = 152/374 (40%), Gaps = 24/374 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L ++ F++Y VF VG+NG GKTN+L+AI FL+ + A Sbjct: 1 MWLEKLRLTYFKSYEEKAFVFGEHVNCIVGENGSGKTNLLDAIYFLTLTKSAFHNQDALG 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHLRIS 123 R + F ++G+ I++ R R + + + + + + Sbjct: 61 IRH-----INDFFLLDGVFNEHGKHIQITCSLQRGQRKVFMADKKHYDRLSDHIGLFPVV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 + P + S ERRRF D ++ P + + + +++ RN LL + D Sbjct: 116 LIAPDDTDLIREGSEERRRFFDGVLGQAVPGYLTDFLQYNKILTQRNGLLKFFAERNHLD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + L +I+ R + L ++ + + H K+ + + Sbjct: 176 EDLLETYNEPLIVLSQRIHQHRAAFMEKFVPLFYKFYEFLSSGHEKVDVIYESEV----- 230 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + ++ + R D ++RT G H+ + + + + GS G+QK L+ + Sbjct: 231 ---VSPDFPAEFRRNRSRDLHAQRTGKGIHKDEYVFEIDGVTLK-KFGSQGQQKSFLIAL 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS----V 354 LA L+ G PILLLD+I LD+ + + L ++ T +Q+F+T + Sbjct: 287 KLAQFELLKEEKGKTPILLLDDIFDKLDDRRIHKLIELIDTGFLAQVFITDARPERSQRI 346 Query: 355 FDSLNETAKFMRIS 368 + + +F I Sbjct: 347 LEHVKADVRFFEIE 360 >gi|313835166|gb|EFS72880.1| recombination protein F [Propionibacterium acnes HL037PA2] gi|314929142|gb|EFS92973.1| recombination protein F [Propionibacterium acnes HL044PA1] gi|314970909|gb|EFT15007.1| recombination protein F [Propionibacterium acnes HL037PA3] gi|328905789|gb|EGG25565.1| DNA replication and repair protein RecF [Propionibacterium sp. P08] Length = 394 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 161/391 (41%), Gaps = 27/391 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR+Y + + A T F+G NG GKTN++EA+ +LS R + + Sbjct: 1 MFVERLELVDFRSYVRVDVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVNNDTPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G+ G + + +++E R+ R + E+ LR Sbjct: 61 VRLGAGQAVVRGRVRAGADDARSLLLEVEINARRANRARIN-RAPLPRPREILGVLRTVV 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P+ + G +RR FLD +V PR D+ER+++ RN LL G Sbjct: 120 FSPNDLTVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLAGKGRSAG 179 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLTGFL 232 + + ++A +G ++ AR++ ++A+ L ++ + T L Sbjct: 180 AEIGATMDIWDDELATIGAELLSARLDTLSAVMPLTSAAYREVAPVNDLATASYKSTIDL 239 Query: 233 DGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 +G + L + L R + + TL+GP R D+++ + Sbjct: 240 EGLWSPPQEGKSPEPIDRNELAHRFLAALAQRRADELIRGVTLVGPQRDDIVLQIGEMPA 299 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Sbjct: 300 K-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDVTRRDRLAASVVQAD 357 Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 Q+ +T S + + + Q L Sbjct: 358 -QVLVTAAVASDVPEIL-HGERFDVGGGQVL 386 >gi|13959485|sp|Q9KHU6|RECF_ACHLA RecName: Full=DNA replication and repair protein recF gi|8515413|gb|AAF75988.1|AF248639_7 RecF [Acholeplasma laidlawii PG-8A] Length = 349 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 83/346 (23%), Positives = 151/346 (43%), Gaps = 23/346 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + FRN + +++ + I G NGVGKT+ILE+I F + + R + D+ + Sbjct: 2 ITSIELRNFRNLENYKVLINRPLVIIQGLNGVGKTSILESIYFAATTKSHRSSVEKDMIQ 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 P +A V+ +E I L R+ IN +R + + LR+ Sbjct: 62 YDKP-----YASVKLIEDSKLHEIVLTPNGKRTT----INKSEVRKISDYIGQLRVVMFA 112 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--FDSSWCS 184 P + G ERR FLD + + + R + ++++++ RN LL + D ++ + Sbjct: 113 PEDLMLIKGSPSERRYFLDMELMQVSKTYLRNLNSYKKILKQRNALLKKNRNLTDYTFLN 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+ ++G++I R + I AL+ K F + + K Sbjct: 173 ILGEQLYDVGIQIFDERQKFIEALNQKFKTIQTK---------YKDF-EVEMLYEPNVTK 222 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + K L +K D M T G H+ D + Y + S G +++++ + LA Sbjct: 223 ENFLKHLKTKQKQDIMYETTTAGIHKDDFKLLYKGLNAKDS-ASQGTSRLIVIELKLALL 281 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 I T ILLLD++ + LD +++N ++ Q+F+T Sbjct: 282 EWIKEVTKTDAILLLDDVLSELDLERQNLFMSQLSK-NHQVFITTA 326 >gi|15839375|ref|NP_334412.1| recombination protein F [Mycobacterium tuberculosis CDC1551] gi|148821194|ref|YP_001285948.1| recombination protein F [Mycobacterium tuberculosis F11] gi|215405987|ref|ZP_03418168.1| recombination protein F [Mycobacterium tuberculosis 02_1987] gi|215413857|ref|ZP_03422522.1| recombination protein F [Mycobacterium tuberculosis 94_M4241A] gi|215425189|ref|ZP_03423108.1| recombination protein F [Mycobacterium tuberculosis T92] gi|215432908|ref|ZP_03430827.1| recombination protein F [Mycobacterium tuberculosis EAS054] gi|215448276|ref|ZP_03435028.1| recombination protein F [Mycobacterium tuberculosis T85] gi|218755719|ref|ZP_03534515.1| recombination protein F [Mycobacterium tuberculosis GM 1503] gi|219555774|ref|ZP_03534850.1| recombination protein F [Mycobacterium tuberculosis T17] gi|253796918|ref|YP_003029919.1| DNA replication and repair protein recF [Mycobacterium tuberculosis KZN 1435] gi|254233408|ref|ZP_04926734.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis C] gi|254366463|ref|ZP_04982507.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis str. Haarlem] gi|254548931|ref|ZP_05139378.1| recombination protein F [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260198987|ref|ZP_05766478.1| recombination protein F [Mycobacterium tuberculosis T46] gi|260203140|ref|ZP_05770631.1| recombination protein F [Mycobacterium tuberculosis K85] gi|289441370|ref|ZP_06431114.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T46] gi|289552253|ref|ZP_06441463.1| DNA replication and repair protein recF [Mycobacterium tuberculosis KZN 605] gi|289567885|ref|ZP_06448112.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T17] gi|289572579|ref|ZP_06452806.1| DNA replication and repair protein recF [Mycobacterium tuberculosis K85] gi|289747773|ref|ZP_06507151.1| recombination protein F [Mycobacterium tuberculosis 02_1987] gi|289748465|ref|ZP_06507843.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T92] gi|289756062|ref|ZP_06515440.1| recombination protein F [Mycobacterium tuberculosis EAS054] gi|289760100|ref|ZP_06519478.1| recombination protein F [Mycobacterium tuberculosis T85] gi|289764118|ref|ZP_06523496.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis GM 1503] gi|294995611|ref|ZP_06801302.1| recombination protein F [Mycobacterium tuberculosis 210] gi|297632471|ref|ZP_06950251.1| recombination protein F [Mycobacterium tuberculosis KZN 4207] gi|297729440|ref|ZP_06958558.1| recombination protein F [Mycobacterium tuberculosis KZN R506] gi|298527401|ref|ZP_07014810.1| recF protein [Mycobacterium tuberculosis 94_M4241A] gi|306778821|ref|ZP_07417158.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu002] gi|306782609|ref|ZP_07420931.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu003] gi|306786977|ref|ZP_07425299.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu004] gi|306791533|ref|ZP_07429835.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu005] gi|306795597|ref|ZP_07433899.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu006] gi|306801572|ref|ZP_07438240.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu008] gi|306805781|ref|ZP_07442449.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu007] gi|306970178|ref|ZP_07482839.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu009] gi|313656769|ref|ZP_07813649.1| recombination protein F [Mycobacterium tuberculosis KZN V2475] gi|13879044|gb|AAK44226.1| recF protein [Mycobacterium tuberculosis CDC1551] gi|124603201|gb|EAY61476.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis C] gi|134151975|gb|EBA44020.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis str. Haarlem] gi|148719721|gb|ABR04346.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis F11] gi|253318421|gb|ACT23024.1| DNA replication and repair protein recF [Mycobacterium tuberculosis KZN 1435] gi|289414289|gb|EFD11529.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T46] gi|289436885|gb|EFD19378.1| DNA replication and repair protein recF [Mycobacterium tuberculosis KZN 605] gi|289537010|gb|EFD41588.1| DNA replication and repair protein recF [Mycobacterium tuberculosis K85] gi|289541638|gb|EFD45287.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T17] gi|289688301|gb|EFD55789.1| recombination protein F [Mycobacterium tuberculosis 02_1987] gi|289689052|gb|EFD56481.1| DNA replication and repair protein recF [Mycobacterium tuberculosis T92] gi|289696649|gb|EFD64078.1| recombination protein F [Mycobacterium tuberculosis EAS054] gi|289711624|gb|EFD75640.1| DNA replication and repair protein recF (single-strand DNA binding protein) [Mycobacterium tuberculosis GM 1503] gi|289715664|gb|EFD79676.1| recombination protein F [Mycobacterium tuberculosis T85] gi|298497195|gb|EFI32489.1| recF protein [Mycobacterium tuberculosis 94_M4241A] gi|308328158|gb|EFP17009.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu002] gi|308332532|gb|EFP21383.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu003] gi|308336275|gb|EFP25126.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu004] gi|308339880|gb|EFP28731.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu005] gi|308343893|gb|EFP32744.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu006] gi|308347677|gb|EFP36528.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu007] gi|308351595|gb|EFP40446.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu008] gi|308352302|gb|EFP41153.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu009] gi|326905762|gb|EGE52695.1| DNA replication and repair protein recF [Mycobacterium tuberculosis W-148] gi|328456709|gb|AEB02132.1| DNA replication and repair protein recF [Mycobacterium tuberculosis KZN 4207] Length = 385 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 153/362 (42%), Gaps = 24/362 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A + L T+FVG NG GKTN++EA+ + + R ++ + Sbjct: 1 MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R+G+ ST +G E D+ I V ++N +R ++ LR Sbjct: 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLRAV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYF 178 P + G +RRR+LD + P ++ER++R R LL Sbjct: 116 LFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRG 175 Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----- 230 D ++++AE G ++ AR++++N L+ + + Q S+ Sbjct: 176 DRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235 Query: 231 --FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + D L L R + L+GPHR DLI+ D+ S Sbjct: 236 VTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFAS 294 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q+ +T Sbjct: 295 HGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLVT 352 Query: 349 GT 350 Sbjct: 353 AA 354 >gi|161830866|ref|YP_001595903.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 331] gi|215918858|ref|NP_819059.2| DNA replication and repair protein RecF [Coxiella burnetii RSA 493] gi|218511878|sp|Q83FD6|RECF_COXBU RecName: Full=DNA replication and repair protein recF gi|226737785|sp|A9N902|RECF_COXBR RecName: Full=DNA replication and repair protein recF gi|161762733|gb|ABX78375.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 331] gi|206583742|gb|AAO89573.2| DNA replication and repair protein [Coxiella burnetii RSA 493] Length = 357 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 15/366 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +++FRN A + + +Q F G NG GKT+ILE+I +LS GR FR + + Sbjct: 4 IGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQ 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F G + I + +E RD RCL+IN K L + L Sbjct: 64 DNTDRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLS 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 R RR+FLD ++F ++P +R ++ RN L + Sbjct: 120 AMSHRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAALK-AKLPLGEITHW 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + + E G +++ R ++ L + +Q + P L F S Sbjct: 179 DKMLVEDGERLHQLRQNVVTEFKPLFTQMLQ-QFLPAYPLIGHYFRGWSEKYS------- 230 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 ++L K D T GP R+D + D S G+QK+V + A L Sbjct: 231 LMEQLQINLKQDLQRGYTQAGPQRADFRLTLGDLPAQDIL-SQGQQKLVTYALHFAQGLL 289 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + TG +PI L+D++ A LD +KR+ + +V + SQ+F++G D + L + Sbjct: 290 LKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPNEI-RLPPHSTLFH 348 Query: 367 ISNHQA 372 + + + Sbjct: 349 VKHGKV 354 >gi|46911667|emb|CAG18465.1| Putative RecF [Photobacterium profundum SS9] Length = 320 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 72/330 (21%), Positives = 144/330 (43%), Gaps = 14/330 (4%) Query: 44 LEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 +EAI +L GR FR + V R F RV ++ + + + D + + Sbjct: 1 MEAIHYLGHGRSFRSHLTSRVIRHEQQELF-IHGRV-LTNNQLELPLGINKKRDGTT-EV 57 Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +++ + + +L + L + + P + G RR F+D VF I+P+ + Sbjct: 58 KVSGESGQKLSQLAQVLPLQLITPEGFELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIK 117 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 RL + RN LL S + ++A L +I++ R E + A+ E Q P Sbjct: 118 RLTKQRNALLKTARSYRE-LSYWDQELAVLAEEISVWRDEYLIAVKQKAAEICQG-FLPE 175 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 ++ L+ + + + YA+ L + D T+ GPH++DL + + Sbjct: 176 YEIQLSYYRGWEKETP-------YAELLKRNFERDCQLGYTVNGPHKADLRMKVSGTPVE 228 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 S G+ K+++ + LA ++ TG I L+D+ ++ LD +R L + + + + Sbjct: 229 DVL-SRGQLKLMVCALRLAQGLHLTEATGKQCIYLIDDFASELDSHRRALLAQRLKETNA 287 Query: 344 QIFMTGT-DKSVFDSLNETAKFMRISNHQA 372 Q+F++ ++ + D +E K + + + Sbjct: 288 QVFISAISNEQIADMHDENGKMFHVEHGKI 317 >gi|268318289|ref|YP_003292008.1| DNA replication and repair protein RecF [Rhodothermus marinus DSM 4252] gi|262335823|gb|ACY49620.1| DNA replication and repair protein RecF [Rhodothermus marinus DSM 4252] Length = 387 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 79/381 (20%), Positives = 151/381 (39%), Gaps = 17/381 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FR + R+ F + + G NG GKTN+LEAI +L + F A + Sbjct: 1 MLLRSLRVRNFRAHEDTRVTFAPRINLIGGPNGAGKTNLLEAIHYLCLSKSFLAAQDSYA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+P FF G ++ ++L R N + + +L L + Sbjct: 61 LREGAP-FFELEGVFAGT-QRPELVVRLIYVPGEGKRVFF-NGAPLERLADLVGELPVVV 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----D 179 L P+ + G ERRRFLD ++ P + + ++ + R +R RN LL Sbjct: 118 LSPADQALTGGPPEERRRFLDNLLSQAYPAYLQDLLQYRRALRQRNELLARWRRHPASVQ 177 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI--KLSLTGFLDGKFD 237 S S + ++ LG ++ R+ + ++ + E ++ + Sbjct: 178 PSLLESWQEELVALGSRLIHRRLRFVQEFAAYLAEAHACLGLSAEIPRIEYVTVAPLDPE 237 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 A+ + +L + RTL GPHR +L++ + + S G+ +++ + Sbjct: 238 ADPEAIAAAFRARLQRLAPREREQGRTLTGPHRDELVLRLNGLEVR-RYASQGQHRIMGL 296 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVF 355 + LA + P+LLLD++ LD + + ++ Q F+T + Sbjct: 297 ALKLAKFFYLRARRDETPLLLLDDVFDGLDRYRTQRILELLQHGEQIEQSFVTSARLDLL 356 Query: 356 DSLNETA----KFMRISNHQA 372 L A + + + Sbjct: 357 QELQTLAAPENRIFWVEAGRV 377 >gi|297616217|ref|YP_003701376.1| DNA replication and repair protein RecF [Syntrophothermus lipocalidus DSM 12680] gi|297144054|gb|ADI00811.1| DNA replication and repair protein RecF [Syntrophothermus lipocalidus DSM 12680] Length = 368 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 145/371 (39%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L FRN S + ++ + +G N GKTN+LEAI + R FR A D+ Sbjct: 1 MKILKLETRFFRNLVSCVIEPCSRINVILGKNAQGKTNLLEAIYVVGHNRSFRGARDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + E I I + + + L++N+ + L+ Sbjct: 61 VTHGRREGYRLKVTYALDE---RIIIFEQRYSESKNKVLRLNNKPAASKTQHR--LKSVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RR FLD ++ + P + R + +++++ RN L + Sbjct: 116 FTPEDLYLIKGEPERRRNFLDGILCQLRPEYERTLESYKKILGRRNAYLKQSRSFGQGMR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS---FC 241 ++ E V + AR+ + L + + Q + + + L + Sbjct: 176 VLQGMFIEAAVPLICARLNLAAILEKEVSKLYQLLSGEAEDVCMRYVLSFPLETGKLTPD 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L K L + + TL+GPHR D + + S G+Q+ + V + L Sbjct: 236 LLAASLDKALEVSKDKELKQGITLVGPHRDDFNLYLRGHN-ARTYASQGQQRNLAVSLKL 294 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 N G+ P+LLLDE+ A LD+++R L + Q F++ ++ D + Sbjct: 295 GELATYKNIKGYFPVLLLDEVLAELDKNRRTLLLEYLQQAEFQTFISSVERE--DVVAVA 352 Query: 362 AKFMRISNHQA 372 K + + + Sbjct: 353 GKVFAVEDGRI 363 >gi|15836608|ref|NP_297296.1| recombination protein F [Xylella fastidiosa 9a5c] gi|13959493|sp|Q9PHE1|RECF_XYLFA RecName: Full=DNA replication and repair protein recF gi|9104763|gb|AAF82816.1|AE003855_3 DNA replication and repair RecF protein [Xylella fastidiosa 9a5c] Length = 364 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 76/369 (20%), Positives = 155/369 (42%), Gaps = 10/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FR + ++ F+G+NG GKT++LEA+ + GR FR + Sbjct: 1 MHITQLVLRHFRCFDAVDFFPLPGLNFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS + F + + + + +++ I + L L + Sbjct: 61 IRHGSEN-LEIFVDWQETDLINARRRRAGLSHYGQEWIGRLDGQKIMHLATLCAALAVIT 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 S ++ + + RRRFLD +F ++P + +++ RN LL + + + Sbjct: 120 FESSSYQLINSNAELRRRFLDWGLFHVEPDFLDLWRCYTHVLKQRNSLLKQ-KEELAMLE 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + +++E+G ++ R + + L ++ + + P++K+ F G Sbjct: 179 AWDQKLSEVGEQLTFRRFQYLERLKQRVIPLISRIT-PNLKIHGLNFNHGWRRHELP--- 234 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 LF R+ D T +GPHRSD + + S G+ K++ + LA A Sbjct: 235 --LIDALFISRERDYQYGYTSLGPHRSDWTPQFASIP-GVHVLSRGQGKLITLMCLLAQA 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363 + + G PIL LD++++ LD+ + + ++ +I +Q+ +TGT+ Sbjct: 292 QDFFDQRGEWPILALDDLASELDQKHQWRVLEMLAEIPAQVLITGTEIPQGLKPYFSVGA 351 Query: 364 FMRISNHQA 372 + + Sbjct: 352 MFHVEHGAI 360 >gi|1262354|emb|CAA94710.1| RecF [Mycobacterium leprae] Length = 385 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 158/379 (41%), Gaps = 23/379 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + +FR++ + L + T+F G NG GKTN++EA+ + + R + + Sbjct: 1 MYVRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + +I LE R+ R ++N ++R + E+ LR Sbjct: 61 IRAGTIRAIVSTIVVNEG---RECAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEG 176 P + G RRR+LD + P D+++++R R LL Sbjct: 117 FAPEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRLALLKSLAAARYRSD 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLD- 233 + ++AE G ++ AR++++N L+ + + Q +S LD Sbjct: 177 QGVLDTLDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQLLAPGSRTASISYRASLDI 236 Query: 234 ----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 G L+ + L R ++ L+GPHR +L + D+ S Sbjct: 237 GGIAGVGSSDRALLQADLLAGLSTRRNVELERGICLVGPHRDELELRLGDQPAK-GFASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + + LA L+ G P+LLLD++ A LD + AL V + Q+ +T Sbjct: 296 GESWSLAIALRLAAYELL-RADGNEPVLLLDDVFAELDAARCRALA-TVAESAEQVLVTS 353 Query: 350 TDKSVFDSLNETAKFMRIS 368 + + AK++ + Sbjct: 354 AAQEDIP-VGWDAKWVTVD 371 >gi|189501917|ref|YP_001957634.1| hypothetical protein Aasi_0498 [Candidatus Amoebophilus asiaticus 5a2] gi|189497358|gb|ACE05905.1| hypothetical protein Aasi_0498 [Candidatus Amoebophilus asiaticus 5a2] Length = 370 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 87/380 (22%), Positives = 159/380 (41%), Gaps = 24/380 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L F+NY S+ L F Q VG NG GKTN+L+AI +LS + + + Sbjct: 1 MLLRKLRCYHFKNYDSIELSFATQLNCIVGANGAGKTNLLDAIHYLSLTKSAFNSIDSQN 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 G T ++G D S ++ DR + LQ+N + + E I Sbjct: 61 ILHG-----GTQMSIQGHFFKNDKSYDVKCIVDRDQGKSLQVNGKAYKTMREHIGQFPIV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 P + S RR+F D ++ IDP + +I ++++++ RN L + D Sbjct: 116 LTTPYDTELIRSTSEVRRKFFDAILCQIDPNYLHTLIQYQQILKHRNSFLKMSAGKFNVD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + +S + Q+ L ++ AR ++ ++ + + + + G+ D Sbjct: 176 RALINSYDTQLLPLCKQLYAARKAFVDIFYPILQQQYEYFVDAPEIIEM-GYESDADDPG 234 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + ++ D K D +++RT++G HR D + + I GS G+QK ++ + Sbjct: 235 -------FEQRFLDNIKEDLLAQRTILGIHRDDYVFMLNNYPIK-KFGSQGQQKSFIIAL 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGT----DKSV 354 LA I G P+LLLD+I LDE + L + Q+++T S+ Sbjct: 287 RLAQFACIHQALGCKPLLLLDDIFDKLDEQRIERLVYLMAQQYFGQVWITDAGGKRSASI 346 Query: 355 FDSLNETAKFMRISNHQALC 374 + +I + Sbjct: 347 LKEIQADKALFKIEGGTLMQ 366 >gi|113475400|ref|YP_721461.1| recombination protein F [Trichodesmium erythraeum IMS101] gi|123352421|sp|Q114T6|RECF_TRIEI RecName: Full=DNA replication and repair protein recF gi|110166448|gb|ABG50988.1| DNA replication and repair protein RecF [Trichodesmium erythraeum IMS101] Length = 390 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 169/392 (43%), Gaps = 28/392 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ +FRNY ++ FD TI +GDN GK+N+LE++ LS + R D+ Sbjct: 1 MYLKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S A +E G D+++ L ++ R + +N I + L + Sbjct: 61 I-LDSKQASKIQASLERQLGNIDLALTLRSQGK---RTVAVNGETISRHLDFLSILNVVH 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 + G RR +LDR++ ++P + ++ + +++R RN LL + Sbjct: 117 FSSLDLDLVRGGPEVRRYWLDRLLVQLEPVYAHILLQYNQVLRQRNALLKKIRQQKMAAE 176 Query: 181 ----------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 + +AQ+A G ++ R ++ L+ L E+ + + Sbjct: 177 TTGSSPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEY 236 Query: 231 FLDGKFD-------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 + D S +++ + +K+ + T++GPHR D+I D Sbjct: 237 LANVIVDSNELIIQDSLEGVRQAFLEKIKVRAIAEQYQGTTVVGPHRDDVIFTINDTP-A 295 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 +GS G+Q+ +++ + LA +LI P+LLLD++ A LD ++N L +++ Sbjct: 296 RQYGSQGQQRTLVLALKLAELQLIEEVVQEPPLLLLDDVLAELDLHRQNQLLEAISN-RF 354 Query: 344 QIFMTGTDKSVFD-SLNETAKFMRISNHQALC 374 Q +T T FD + + + + + Sbjct: 355 QTLITTTHLGCFDGQWLQDTQILSVKSGNISS 386 >gi|320162555|ref|YP_004175780.1| DNA replication and repair protein RecF [Anaerolinea thermophila UNI-1] gi|319996409|dbj|BAJ65180.1| DNA replication and repair protein RecF [Anaerolinea thermophila UNI-1] Length = 413 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 162/399 (40%), Gaps = 36/399 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+++ FR +A L + + + VG+N GKT++LEAI +L+ + + Sbjct: 1 MHLTHLSLTHFRLFARLDMELPRRTLLLVGENAQGKTSLLEAIYYLATFTSLHASLDRQI 60 Query: 65 TRIGSPSFFSTFARV------EGMEGLADISIKLETRDD----RSVRCLQINDVVIRVVD 114 + AR+ EG ++ + LE R + + ++ V R Sbjct: 61 VSFAAAREPLAVARIVGDFEREGRAHRLEVRLILEANGGFPPARFRKEILLDGVK-RTAQ 119 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 E L +P M I G ERRR+L+ + P + + + D+ R + RN LL Sbjct: 120 EATGALTAVMFLPDMTHILDGSPEERRRYLNLALAQAVPGYAQALTDYTRALEQRNALLK 179 Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG- 230 E D + + + +AE G I AR+ I L L + L Sbjct: 180 LLQERSADPAQLAYWDTLLAEKGAFILHARIAAIAELERLAARIHNRLTGGTEVLQFVYL 239 Query: 231 -------FLDGKFDQ-----------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 +G++ S L+E + ++L D R + T IGPHR + Sbjct: 240 PAYDPLPHPEGQYALPILTPMDRGGFSLTQLREGFLQRLSDLRSEEIARGVTTIGPHRDE 299 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 L + +GS G+ + L+ + +A AR + TG PILLLDEI A LD+ +R Sbjct: 300 LRF-LSNGVDLGDYGSRGQLRTTLLSLKMAEARWMKERTGEFPILLLDEILAELDDRRRA 358 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNH 370 L + D Q +T TD +F R++ Sbjct: 359 DLLDALDDFE-QAVLTTTDLKLFAPPFLSRCTVWRVTQG 396 >gi|317131012|ref|YP_004090326.1| DNA replication and repair protein RecF [Ethanoligenens harbinense YUAN-3] gi|315468991|gb|ADU25595.1| DNA replication and repair protein RecF [Ethanoligenens harbinense YUAN-3] Length = 375 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 87/379 (22%), Positives = 152/379 (40%), Gaps = 22/379 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRN L D IF G N GKTN+LEAI + R FR A +++ Sbjct: 1 MIVHRLSLQGFRNLEQTVLEPDPSVNIFYGQNAQGKTNLLEAIWLFTGARSFRGAKDSEL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S G A +SI R ++NDV ++ L+ Sbjct: 61 VGFQAEKADLSLSFTAGGRLQEAVLSI------REGRRYARLNDVPLQSPAGLSGEFCAV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 P + RR FLD + + PRH + + + + RN LL + Sbjct: 115 IFSPEHLSLVKDGPSVRRAFLDEAICPLRPRHAAILAAYHKALIQRNALLKDIPHHMDLL 174 Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--- 237 + ++ +LG I AR+ + L Q + H + + Sbjct: 175 DTLDVWDERVGKLGAAILHARLRYLARLLPKAERLHQSISNSHEQAAFRYESAKGLQNVL 234 Query: 238 ----QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + +++ + + R+ D + T +GPHR DL + ++ + S G+Q+ Sbjct: 235 DDPGRHASEIEQALRAAMRERRRADLETGVTGVGPHRDDLTISVAERP-ARSFASQGQQR 293 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + LA A ++++ G P+LLLD++ + LD +R+ L + G+Q+F+T D Sbjct: 294 TAALALKLAEAEVLTDVMGEPPVLLLDDVFSELDGSRRDYLMHHID--GAQVFITCCDPQ 351 Query: 354 VFDSLNETAKFMRISNHQA 372 S +SN Q Sbjct: 352 ELAS--SAGAVFSLSNGQI 368 >gi|71899733|ref|ZP_00681885.1| RecF protein [Xylella fastidiosa Ann-1] gi|71730528|gb|EAO32607.1| RecF protein [Xylella fastidiosa Ann-1] Length = 364 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 154/374 (41%), Gaps = 20/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FR + + F+G+NG GKT++LEA+ + GR FR + Sbjct: 1 MHITQLVLRHFRCFDVVDFFPLPGLNFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGL 60 Query: 65 TRIGSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 R GS + + A + A +S +++ I + L Sbjct: 61 IRHGSENLEIFVDWQETALINARRRRAGLSHY------GQEWIGRLDGQKIMHLASLCAA 114 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 L + S ++ + + RRRFLD +F ++P + +++ RN LL + Sbjct: 115 LAVITFESSSYQLINSNAELRRRFLDWGLFHVEPDFLDLWRRYTHVLKQRNSLLKQ-KEK 173 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + + +++E+G ++ R + + L ++ + + P++K+ F G Sbjct: 174 LAMLEAWDQKLSEVGEQLTFRRFQYLERLKQRVIPLISRIT-PNLKIHGFNFNHGWRRHE 232 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 LF R+ D T +GPHRSD + + S G+ K++ + Sbjct: 233 LP-----LIDALFISRERDYQYGYTSLGPHRSDWTPQFSSIP-GVHFLSRGQGKLITLMC 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSL 358 LA A+ + G PIL LD++++ LD+ + + ++ +I +Q+ +TGT+ Sbjct: 287 LLAQAQDFFDQRGEWPILALDDLASELDQKHQWRVLEMLAEIPAQVLITGTEISQGLKPF 346 Query: 359 NETAKFMRISNHQA 372 + + Sbjct: 347 FSVGAMFHVEHGAI 360 >gi|160944263|ref|ZP_02091492.1| hypothetical protein FAEPRAM212_01772 [Faecalibacterium prausnitzii M21/2] gi|158444445|gb|EDP21449.1| hypothetical protein FAEPRAM212_01772 [Faecalibacterium prausnitzii M21/2] Length = 373 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 85/382 (22%), Positives = 158/382 (41%), Gaps = 30/382 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RN + RL + T+ G+NG GKTN+LEAI L+ G+ FR A++ Sbjct: 1 MRLLSLEVQNYRNICAARLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 65 TRIGSPSFFSTFA-----RVEGMEGLADISIKLETR---DDRSVRCLQINDVVIRVVDEL 116 R G +F A R EG E I++ + R +N + L Sbjct: 61 VRRG-EAFAVLEADTQRDRPEGCEPAEPAHIRMTVGTPEAAKPGRYAAVNGAAPKRAAAL 119 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 P + G RR+FLD + + P + + R+++ +N LL Sbjct: 120 AGSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLASYRRYVRVLQQKNALLRHS 179 Query: 177 --------YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 + + ++A G + R E + L+ + + ++S+ Sbjct: 180 ANGQERPYAEKRTLLEVLNTELAAQGEALQQRRREYLKLLAPRACANYAELSHGAERMSI 239 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + A+ L ++ + + ++L G HR DL + D+ + + S Sbjct: 240 RY--------AAQFAPGGLAELLRQRQEEELRAGQSLCGIHREDLELLLDDQPARV-YAS 290 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+Q+ V++ + +A A + TG P+LLLD++ + LDE ++ L + + Q F+T Sbjct: 291 QGQQRSVVLSLKMAEAAAAAQITGEHPVLLLDDVLSELDEGRKQYLLTCMKEK--QTFVT 348 Query: 349 GTDKSVFDSLNETAKFMRISNH 370 D + F L + R+ Sbjct: 349 SCDDTDF--LKTDGEVYRMDGG 368 >gi|295103717|emb|CBL01261.1| recF protein [Faecalibacterium prausnitzii SL3/3] Length = 373 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 85/382 (22%), Positives = 157/382 (41%), Gaps = 30/382 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +RN + RL + T+ G+NG GKTN+LEAI L+ G+ FR A++ Sbjct: 1 MHLLSLEVQNYRNICAARLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 65 TRIGSPSFFSTFA-----RVEGMEGLADISIKLETR---DDRSVRCLQINDVVIRVVDEL 116 R G +F A R EG E I++ + R +N + L Sbjct: 61 VRRG-EAFAVLEADTQRDRPEGCEPAEPAHIRMTVGTPEAAKPGRYAAVNGAAPKRAAAL 119 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 P + G RR+FLD + + P + + R+++ +N LL Sbjct: 120 AGSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLASYRRYVRVLQQKNALLRHS 179 Query: 177 --------YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 + + ++A G + R E + L+ + + ++S+ Sbjct: 180 ANGQERPYAEKRTLLEVLNTELAAQGEALQQRRREYLKLLAPRACANYAELSHGAERMSI 239 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + A L ++ + + ++L G HR DL + D+ + + S Sbjct: 240 RY--------AAQFAPGGLAALLRQRQEEELRAGQSLCGIHREDLELLLDDQPARV-YAS 290 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+Q+ V++ + +A A + TG P+LLLD++ + LDE ++ L + + Q F+T Sbjct: 291 QGQQRSVVLSLKMAEAAAAAQITGEHPVLLLDDVLSELDEGRKQYLLTCMKEK--QTFVT 348 Query: 349 GTDKSVFDSLNETAKFMRISNH 370 D + F L + R++ Sbjct: 349 SCDDTDF--LKTDGEVYRMNGG 368 >gi|15604793|ref|NP_219577.1| recombination protein F [Chlamydia trachomatis D/UW-3/CX] gi|166154295|ref|YP_001654413.1| recombination protein F [Chlamydia trachomatis 434/Bu] gi|166155170|ref|YP_001653425.1| recombination protein F [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|255310877|ref|ZP_05353447.1| recombination protein F [Chlamydia trachomatis 6276] gi|255317177|ref|ZP_05358423.1| recombination protein F [Chlamydia trachomatis 6276s] gi|301335547|ref|ZP_07223791.1| recombination protein F [Chlamydia trachomatis L2tet1] gi|13959461|sp|O84077|RECF_CHLTR RecName: Full=DNA replication and repair protein recF gi|226737775|sp|B0B9I2|RECF_CHLT2 RecName: Full=DNA replication and repair protein recF gi|226737777|sp|B0BB61|RECF_CHLTB RecName: Full=DNA replication and repair protein recF gi|3328469|gb|AAC67665.1| ABC superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] gi|165930283|emb|CAP03769.1| DNA replication and repair protein [Chlamydia trachomatis 434/Bu] gi|165931158|emb|CAP06723.1| DNA replication and repair protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|296435592|gb|ADH17766.1| recombination protein F [Chlamydia trachomatis G/9768] gi|296436516|gb|ADH18686.1| recombination protein F [Chlamydia trachomatis G/11222] gi|296437452|gb|ADH19613.1| recombination protein F [Chlamydia trachomatis G/11074] gi|297139951|gb|ADH96709.1| recombination protein F [Chlamydia trachomatis G/9301] gi|297748203|gb|ADI50749.1| RecF [Chlamydia trachomatis D-EC] gi|297749083|gb|ADI51761.1| RecF [Chlamydia trachomatis D-LC] Length = 365 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 151/371 (40%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRNY LRL + G N GKTN+LEA+ LS GR FR + D Sbjct: 1 MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FF +E + ++ L + D+ + + + I + EL + Sbjct: 61 IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 I G ERRRFLD ++ ++ + + + + RN + + S Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQNQKA--IS 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + + G + R E L+++ + L L + + + Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 Y ++L D T++GPHR +L++ D + S G++ +L + A Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPV-AKFSSEGQKHSLLAVLRFAEC 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + P+L +D+I A LD+ + + L ++ +G Q+ T T D + T+ Sbjct: 293 VYLQEEFCIHPLLCMDDIHACLDQQRLDQLLQLSNSLG-QVVTTST--ICPDHRSTTSCI 349 Query: 365 MRISNHQALCI 375 ++ Q + Sbjct: 350 FHVTQAQVSLV 360 >gi|165924210|ref|ZP_02220042.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 334] gi|165916344|gb|EDR34948.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 334] Length = 357 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 15/366 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +++FRN A + + +Q F G NG GKT+ILE+I +LS GR FR + + Sbjct: 4 IGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQ 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F G + I + +E RD RCL+IN K L + L Sbjct: 64 DNTDRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLS 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 R RR+FLD ++F ++P +R ++ RN L + Sbjct: 120 AMSHRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNASLK-AKLPLGEITHW 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + + E G +++ R ++ L + +Q + P L F S Sbjct: 179 DKMLVEDGERLHQLRQNVVTEFKPLFTQMLQ-QFLPAYPLIGHYFRGWSEKYS------- 230 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 ++L K D T GP R+D + D S G+QK+V + A L Sbjct: 231 LMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL-SQGQQKLVTYALHFAQGLL 289 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + TG +PI L+D++ A LD +KR+ + +V + SQ+F++G D + L + Sbjct: 290 LKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPNEI-RLPPHSTLFH 348 Query: 367 ISNHQA 372 + + + Sbjct: 349 VKHGKV 354 >gi|15607145|ref|NP_214517.1| recombination protein F [Mycobacterium tuberculosis H37Rv] gi|148659760|ref|YP_001281283.1| recombination protein F [Mycobacterium tuberculosis H37Ra] gi|167969466|ref|ZP_02551743.1| recombination protein F [Mycobacterium tuberculosis H37Ra] gi|306778291|ref|ZP_07416628.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu001] gi|306974410|ref|ZP_07487071.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu010] gi|307082118|ref|ZP_07491288.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu011] gi|307086729|ref|ZP_07495842.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu012] gi|2842621|sp|Q59586|RECF_MYCTU RecName: Full=DNA replication and repair protein recF gi|166220718|sp|A5TY71|RECF_MYCTA RecName: Full=DNA replication and repair protein recF gi|1552556|emb|CAB02424.1| DNA REPLICATION AND REPAIR PROTEIN RECF (SINGLE-STRAND DNA BINDING PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|148503912|gb|ABQ71721.1| DNA replication and repair protein RecF [Mycobacterium tuberculosis H37Ra] gi|308213441|gb|EFO72840.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu001] gi|308356305|gb|EFP45156.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu010] gi|308360192|gb|EFP49043.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu011] gi|308363879|gb|EFP52730.1| DNA replication and repair protein recF [Mycobacterium tuberculosis SUMu012] Length = 385 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 153/362 (42%), Gaps = 24/362 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A + L T+FVG NG GKTN++EA+ + + R ++ + Sbjct: 1 MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R+G+ ST +G E D+ I V ++N +R ++ LR Sbjct: 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLRAV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYF 178 P + G +RRR+LD + P ++ER++R R LL Sbjct: 116 LFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRG 175 Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----- 230 D ++++AE G ++ AR++++N L+ + + Q S+ Sbjct: 176 DRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235 Query: 231 --FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + D L L R + L+GPHR DLI+ D+ S Sbjct: 236 VTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFAS 294 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q+ +T Sbjct: 295 HGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLVT 352 Query: 349 GT 350 Sbjct: 353 AA 354 >gi|153209959|ref|ZP_01947546.1| DNA replication and repair protein RecF [Coxiella burnetii 'MSU Goat Q177'] gi|212217691|ref|YP_002304478.1| DNA replication and repair protein [Coxiella burnetii CbuK_Q154] gi|226737782|sp|B6J8S5|RECF_COXB1 RecName: Full=DNA replication and repair protein recF gi|120575205|gb|EAX31829.1| DNA replication and repair protein RecF [Coxiella burnetii 'MSU Goat Q177'] gi|212011953|gb|ACJ19333.1| DNA replication and repair protein [Coxiella burnetii CbuK_Q154] Length = 357 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 155/366 (42%), Gaps = 15/366 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +++FRN A + + +Q F G NG GKT+ILE+I +LS GR FR + + Sbjct: 4 IGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQ 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F G + I + +E RD + RCL+IN K L + L Sbjct: 64 DNTDRFLIFITLYNGTQF---IPLGVE-RDCQGDRCLRINGETASSWSLAAKRLPLCSLS 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 R RR+FLD ++F ++P +R ++ RN L + Sbjct: 120 AMSHRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNASLK-AKLPLGEITHW 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + + E G +++ R ++ L + +Q + P L F S Sbjct: 179 DKMLVEDGERLHQLRQNIVTEFKPLFTQMLQ-QFLPAYPLIGHYFRGWSEKYS------- 230 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 ++L K D T GP R+D + D S G+QK+V + A L Sbjct: 231 LMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL-SQGQQKLVTYALHFAQGLL 289 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + TG +PI L+D++ A LD +KR+ + +V + SQ+F++G D + L + Sbjct: 290 LKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPNEI-RLPPHSTLFH 348 Query: 367 ISNHQA 372 + + + Sbjct: 349 VKHGKV 354 >gi|88813026|ref|ZP_01128268.1| recombination protein F [Nitrococcus mobilis Nb-231] gi|88789659|gb|EAR20784.1| recombination protein F [Nitrococcus mobilis Nb-231] Length = 357 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 153/368 (41%), Gaps = 19/368 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + FRN + L D + G+N GKT++LEAI +L+ GR F + Sbjct: 1 MTLARIEVEAFRNLRGVVLTPDPRVNFIWGNNASGKTSLLEAIHWLARGRSFLSVHSDQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F+ A ++ + ++ R ++ N I + E+ L Sbjct: 61 IRQGC-RAFTLGASIQVPPRTTWLGMERTPGRTR----VRCNGQDIWNLSEIAWLLPTHV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + R+F G ERR LD VF ++ ++ R ++R +R RN L G DS Sbjct: 116 INTESQRLFVGAPQERRSLLDWGVFHVEHSYQGRWRRYQRALRQRNAALRTG--DSQLAR 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + EA + ++ +R +NAL +++ E P ++L QS + Sbjct: 174 AWEADLVTAAEAVDSSRRCYLNALWPHWHAFIE-EWLPELELH-------WDFQSGWPRR 225 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ L R + TL GPHR DL D S G+QK+ + + LA A Sbjct: 226 DDLRGVLAQARGRELERGHTLYGPHRGDLRFIAGDVGAAQRL-SRGQQKLAAIALRLAQA 284 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 L P++L+D+++A LD R + + + +Q+ +T ++ L +F Sbjct: 285 ELTLKNGQQRPVILVDDLAAELDAGHRERVLAKLLRMDAQLLLTALSQNEL-VLPGDGRF 343 Query: 365 --MRISNH 370 + Sbjct: 344 RVFHVEQG 351 >gi|31791180|ref|NP_853673.1| recombination protein F [Mycobacterium bovis AF2122/97] gi|121635886|ref|YP_976109.1| recombination protein F [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635913|ref|YP_976136.1| recombination protein F [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988386|ref|YP_002643053.1| DNA replication and repair protein [Mycobacterium bovis BCG str. Tokyo 172] gi|51316336|sp|Q7U314|RECF_MYCBO RecName: Full=DNA replication and repair protein recF gi|254790483|sp|C1AJ00|RECF_MYCBT RecName: Full=DNA replication and repair protein recF gi|31616765|emb|CAD92865.1| DNA REPLICATION AND REPAIR PROTEIN RECF (SINGLE-STRAND DNA BINDING PROTEIN) [Mycobacterium bovis AF2122/97] gi|121491533|emb|CAL69987.1| dna replication and repair protein recF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491560|emb|CAL70017.1| Dna replication and repair protein recF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771499|dbj|BAH24305.1| DNA replication and repair protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 385 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 153/362 (42%), Gaps = 24/362 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A + L T+FVG NG GKTN++EA+ + + R ++ + Sbjct: 1 MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R+G+ ST +G E D+ I V ++N +R ++ LR Sbjct: 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLRAV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYF 178 P + G +RRR+LD + P ++ER++R R LL Sbjct: 116 LFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVVRQRTALLKSVPGARYRG 175 Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----- 230 D ++++AE G ++ AR++++N L+ + + Q S+ Sbjct: 176 DRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235 Query: 231 --FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + D L L R + L+GPHR DLI+ D+ S Sbjct: 236 VTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFAS 294 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q+ +T Sbjct: 295 HGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLVT 352 Query: 349 GT 350 Sbjct: 353 AA 354 >gi|212211672|ref|YP_002302608.1| DNA replication and repair protein [Coxiella burnetii CbuG_Q212] gi|226737783|sp|B6J289|RECF_COXB2 RecName: Full=DNA replication and repair protein recF gi|212010082|gb|ACJ17463.1| DNA replication and repair protein [Coxiella burnetii CbuG_Q212] Length = 357 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 15/366 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +++FRN A + + +Q F G NG GKT+ILE+I +LS GR FR + + Sbjct: 4 IGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQ 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F G + I + +E RD RCL+IN K L + L Sbjct: 64 DNTDRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLS 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 R RR+FLD ++F ++P +R ++ RN L + Sbjct: 120 AMSHRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAALK-AKLPLGEITHW 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + + E G +++ R ++ L + +Q + P L F S Sbjct: 179 DKMLVEDGERLHQLRQNVVTEFKPLFTQMLQ-QFLPAYPLIGHYFRGWSEKYS------- 230 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 ++L K D T GP R+D + D S G+QK+V + A L Sbjct: 231 LMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL-SQGQQKLVTYALHFAQGLL 289 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + TG +PI L+D++ A LD +KR+ + +V + SQ+F++G D + L + Sbjct: 290 LKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPNEI-RLPPHSTLFH 348 Query: 367 ISNHQA 372 + + + Sbjct: 349 VKHGKV 354 >gi|325846385|ref|ZP_08169354.1| putative DNA replication and repair protein RecF [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481569|gb|EGC84609.1| putative DNA replication and repair protein RecF [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 357 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 84/370 (22%), Positives = 162/370 (43%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L +S+FRNY S + F+ IF+GDN GKTN+LE+I +L+ + F+ D+ Sbjct: 1 MWIQSLRLSKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ++G+ + ++ R + + + + +ND+ +L ++ Sbjct: 61 IMFNEKEMA-----LDGLIRKNESFKNVKIRVNENKKEIFVNDIKYDKNKDLKSLFKLVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182 P I RR +D ++ +++ ++ DF++++ RN++L Sbjct: 116 FTPEDLTIIKDGPNFRRNLIDDIIISVNFSYKALKKDFDKVLSQRNKVLKNQRSKYFKEE 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + Q+ L KI R + I+ +++ + LS+ D Sbjct: 176 LMAFDQQIIRLNYKIYRYREKYISLINTYAKKNHSNLTENKEDLSIIYRPDI-----VAK 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EEY +K + D RT G R ++ + K + GS G+Q+ ++ I LA Sbjct: 231 DIEEYREKFSKNKSYDLKYYRTTSGSQRDEIDIIINGKD-SKKFGSQGQQRSAILNIKLA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + LI NT+ I+L D++ + LDE + N L + G Q +T T+ D + + + Sbjct: 290 NVNLIENTSQDKAIILFDDVFSELDEKRSNFLLENLG--GFQTIITATNTKSLDRV-DKS 346 Query: 363 KFMRISNHQA 372 K +I + Sbjct: 347 KIRKIKDGHI 356 >gi|254784276|ref|YP_003071704.1| DNA replication and repair protein RecF [Teredinibacter turnerae T7901] gi|259563674|sp|C5BKM1|RECF_TERTT RecName: Full=DNA replication and repair protein recF gi|237686556|gb|ACR13820.1| DNA replication and repair protein RecF [Teredinibacter turnerae T7901] Length = 378 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 162/374 (43%), Gaps = 21/374 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+ISEFRN S L + G+NG GKT+ILE+IS L+ GR FR + + Sbjct: 4 LRRLDISEFRNLRSATLQPGEGINLISGENGSGKTSILESISVLAHGRSFRTHKFRRLIN 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 SF EG +S R ++I+ EL + L + + Sbjct: 64 NDEKSFTLFGQIFEGTTRNIGLS-----RASNGDIQIRIDSKAAHTATELAECLPLLVMN 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 + ++ G RR+F D +VF + + + R ++ RN LL S Sbjct: 119 SASFQLLEGSGQVRRKFFDWLVFHVKQEFKHYWKLYARCIKQRNSLLRRDKITRSELLPW 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH---IKLSLTGFLDGKFDQSFCAL 243 + ++ + I R E+ + + + + +F +LS T Sbjct: 179 DQELTKAAQHIESMRSEVFELFQTHFLNEIGQFDFTETLGAELSCTYVSGWSK------- 231 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 Y ++L D + D + T IG H+SD+ ++ + + S G+QK V+V +FLA Sbjct: 232 TGNYNEQLEDQFERDVAAGYTHIGSHKSDVKINLA-RVPAVEELSRGQQKSVIVALFLAE 290 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL---- 358 A + TTG P+ LLD++ A LDE + + + ++GSQ+F T D S+ Sbjct: 291 ALVFRTTTGRTPVFLLDDLPAELDEKNLRIVGKALKNLGSQVFATAIDPKSILTGWELVD 350 Query: 359 NETAKFMRISNHQA 372 +E+ + + + Q Sbjct: 351 DESLRMFHVKHGQV 364 >gi|160872204|ref|ZP_02062336.1| DNA replication and repair protein RecF [Rickettsiella grylli] gi|159121003|gb|EDP46341.1| DNA replication and repair protein RecF [Rickettsiella grylli] Length = 363 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 165/372 (44%), Gaps = 17/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FRN A L L F G NG GK+++LEAI FLS GR FR + Sbjct: 1 MHLFRLKTNYFRNLAELDLEFSPHFNFIYGKNGSGKSSLLEAIYFLSLGRSFRSRLASRA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + F + F+ + G +I LE + N+ V EL K L + + Sbjct: 61 IQYDAERF-NLFSVLLGTSSTTMKTIGLEKIRQGKTKIKIDNNT--NPVSELAKLLPLQF 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P+ + SG RR F+D VF ++P+ + ++ +++ RN L + Sbjct: 118 INPNSYLLLSGGPRARRGFIDWGVFHVEPQFFQIWQRYQHILKQRNAALQRQVP-WNQIK 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCAL 243 + + E +I R ++ L LI+E + K N + L D K + Sbjct: 177 IWDLALIEAADEITSFRENYLHQLVPLIIELINKLVNLQGLNLVFYQGWDKKLN------ 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 A L + D T GPHR+DL++ ++ S GEQK+++ + LA Sbjct: 231 ---LASILSGSLERDYKLLYTQFGPHRADLLLSLNGISV-HEILSRGEQKLLICALQLAQ 286 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET-- 361 L+ + I L D++ + LD K+NAL +++ + +Q+F+T +K++ S+ Sbjct: 287 GLLLKKIAQKSCIYLFDDLFSELDPTKQNALMQLLNTLEAQVFITTIEKTLIKSVETHRL 346 Query: 362 AKFMRISNHQAL 373 K + + Q + Sbjct: 347 GKIFHVDDGQVI 358 >gi|194335185|ref|YP_002016979.1| DNA replication and repair protein RecF [Pelodictyon phaeoclathratiforme BU-1] gi|194307662|gb|ACF42362.1| DNA replication and repair protein RecF [Pelodictyon phaeoclathratiforme BU-1] Length = 369 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 80/361 (22%), Positives = 157/361 (43%), Gaps = 11/361 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K++ ++ FRN+ L +I G N GKT+ILE + + + RGF A ++ Sbjct: 1 MKLQCIHYENFRNHRLLNFEPSYGISILYGPNASGKTSILEGVHYCALTRGFHNALDSEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F + ++ E + + + + ++ I+ + Sbjct: 61 LYFSSDFFVLESSFLDATERATTVRV---LYTKEKEKKIIVDKSEIKPFSRHIGRIPCIT 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180 P+ I +G ERRRFLD + + R+ ++ ++R+++ RN L+ + Y Sbjct: 118 FSPAELVIVNGAPAERRRFLDNAICQTNRRYLDDLLAYKRVLQQRNALIGQMYEKTGSQK 177 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKF-DQ 238 + ++ L I R++ +++ L Q + H + L F D Sbjct: 178 EMLAIWTDSLSRLAASIVYTRMQFLSSFLPLFQTLYQLLSPDEHPTIVYRCSLGKVFHDS 237 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S L ++ K + + + + +T+ GPHR DL+ + I + S G+ ++ L+ Sbjct: 238 SIDQLYSQFLVKFEETEREEILRGQTMTGPHRDDLLFLLHTREIK-KYASQGQMRIFLIA 296 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + L+ RL S+ G PI LLD++ + LD NA+FR++ G Q +T + + + Sbjct: 297 LKLSQHRLFSDILGEKPICLLDDLFSELDASHSNAIFRLLETCG-QTIITSAENKPYSHV 355 Query: 359 N 359 + Sbjct: 356 D 356 >gi|71275532|ref|ZP_00651818.1| RecF protein [Xylella fastidiosa Dixon] gi|71900179|ref|ZP_00682319.1| RecF protein [Xylella fastidiosa Ann-1] gi|170729254|ref|YP_001774687.1| recombination protein F [Xylella fastidiosa M12] gi|226737850|sp|B0U1G7|RECF_XYLFM RecName: Full=DNA replication and repair protein recF gi|71163832|gb|EAO13548.1| RecF protein [Xylella fastidiosa Dixon] gi|71730068|gb|EAO32159.1| RecF protein [Xylella fastidiosa Ann-1] gi|167964047|gb|ACA11057.1| DNA replication and repair RecF protein [Xylella fastidiosa M12] Length = 364 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 155/374 (41%), Gaps = 20/374 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FR + + F+G+NG GKT++LEA+ + GR FR + Sbjct: 1 MHITQLVLRHFRCFDVVDFFPLPGLNFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGL 60 Query: 65 TRIGSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 R GS + + A + A +S +++ I + L Sbjct: 61 IRHGSENLEIFVDWQETALINARRHRAGLSHY------GQEWIGRLDGQKIIHLASLCAA 114 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 L + S ++ + + RRRFLD +F ++P + +++ RN LL + + Sbjct: 115 LAVITFESSSYQLINSNAELRRRFLDWGLFHVEPDFLDLWRCYTHVLKQRNSLLKQ-KEE 173 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + + +++E+G ++ R + + L ++ + + P++K+ F G Sbjct: 174 LAMLEAWDQKLSEVGEQLTFRRFQYLERLKQRVIPLISRIT-PNLKIHGFNFNHGWRRHE 232 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 LF R+ D T +GPHRSD + + S G+ K++ + Sbjct: 233 LP-----LIDALFISRERDYQYGYTSLGPHRSDWTPQFSSIP-GVHVLSRGQGKLITLMC 286 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSL 358 LA A+ + G PIL LD++++ LD+ + + ++ +I +Q+ +TGT+ Sbjct: 287 LLAQAQDFFDQRGEWPILSLDDLASELDQKHQWRVLEMLAEIPAQVLITGTEIPQGLKPF 346 Query: 359 NETAKFMRISNHQA 372 + + Sbjct: 347 FSVGAMFHVEHGAI 360 >gi|77163565|ref|YP_342090.1| RecF protein [Nitrosococcus oceani ATCC 19707] gi|97180823|sp|Q3JF36|RECF_NITOC RecName: Full=DNA replication and repair protein recF gi|76881879|gb|ABA56560.1| DNA replication and repair protein RecF [Nitrosococcus oceani ATCC 19707] Length = 363 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 149/372 (40%), Gaps = 18/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+I FRN + L I G N GKT+ LEAI L GR FR Sbjct: 2 MHITHLDIRNFRNLKHIELHPSKGVNILSGANSSGKTSFLEAIYLLGLGRSFRTVQLISA 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G S A+V+ + G ++ R+ +IN ++ +L L + + Sbjct: 62 IQAGMES-LRVVAKVKQVGGSHTAGVEFGPAGFRA----RINKDTVKKRSQLATQLPLLY 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 + + G RR++LD +F ++P ++R ++ RN +L SW Sbjct: 117 MSSYSHVVLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHVLR--VHKPSWQQ 174 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 ++ +++ G +I R ++ L + + F + + +F Q + Sbjct: 175 EINAWNKKLSTYGEQITSLREAILFKLQDSVSQL-----FTALAHQPISPVTMEFKQGWA 229 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + L + D + T GPHR+++ K + S G+QKV + L Sbjct: 230 RTV-RLEEILNESLNYDRAAGYTRYGPHRAEVAFYVDGKDVREIL-SRGQQKVFCYSLAL 287 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360 + A L+ T I L+D+ ++ LD D R L ++ +G Q+F T + + + Sbjct: 288 SQANLLYRTKEQNCIFLIDDFTSELDADHRKRLLTLLNKLGMQVFATTIESLGSEIKAHP 347 Query: 361 TAKFMRISNHQA 372 K + Q Sbjct: 348 NIKEFHVKLGQV 359 >gi|1321906|emb|CAA63259.1| recF [Mycobacterium tuberculosis H37Rv] Length = 385 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 153/362 (42%), Gaps = 24/362 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A + L T+FVG NG GKTN++EA+ + + R ++ + Sbjct: 1 MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R+G+ ST +G E D+ I V ++N +R ++ LR Sbjct: 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLRAV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYF 178 P + G +RRR+LD + P ++ER++R R LL Sbjct: 116 LFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRG 175 Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----- 230 D ++++AE G ++ AR++++N L+ + + Q S+ Sbjct: 176 DRGVFDTLDLWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235 Query: 231 --FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + D L L R + L+GPHR DLI+ D+ S Sbjct: 236 VTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFAS 294 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q+ +T Sbjct: 295 HGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLVT 352 Query: 349 GT 350 Sbjct: 353 AA 354 >gi|212697385|ref|ZP_03305513.1| hypothetical protein ANHYDRO_01955 [Anaerococcus hydrogenalis DSM 7454] gi|212675577|gb|EEB35184.1| hypothetical protein ANHYDRO_01955 [Anaerococcus hydrogenalis DSM 7454] Length = 357 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 161/370 (43%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L +S+FRNY S + F+ IF+GDN GKTN+LE+I +L+ + F+ D+ Sbjct: 1 MWIQSLRLSKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ++G+ + ++ R + + + + +ND+ +L ++ Sbjct: 61 IMFNEKEMA-----LDGLIRKNESFKNVKIRVNENKKEIFVNDIKYDKNKDLKSLFKLVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182 P I RR +D ++ +++ ++ DF++++ RN++L Sbjct: 116 FTPEDLTIIKDGPNFRRNLIDDIIISVNFSYKALKKDFDKVLSQRNKVLKNQRSKYFKEE 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + Q+ L KI R + I+ +++ + LS+ D Sbjct: 176 LMAFDQQIIRLNYKIYRYREKYISLINNYAKKNHSNLTENKEDLSIIYRPDI-----VAK 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EEY +K + D RT G R ++ + K + GS G+Q+ ++ I LA Sbjct: 231 DIEEYREKFSKNKSYDLKYYRTTAGIQRDEIDIIINGKD-SKKFGSQGQQRSAILNIKLA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + LI NT+ I+L D++ + LDE + N L + Q +T T+ D + + + Sbjct: 290 NVNLIENTSQDKAIILFDDVFSELDEKRSNFLLENLGRF--QTIITATNTKSLDRV-DKS 346 Query: 363 KFMRISNHQA 372 K +I + Sbjct: 347 KIRKIKDGHI 356 >gi|210634750|ref|ZP_03298278.1| hypothetical protein COLSTE_02205 [Collinsella stercoris DSM 13279] gi|210158690|gb|EEA89661.1| hypothetical protein COLSTE_02205 [Collinsella stercoris DSM 13279] Length = 361 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 161/362 (44%), Gaps = 12/362 (3%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L++ ++R++A L D T+ VG N VGKTN++EA+ L+ G FR+ S +++ R Sbjct: 6 TELSVVQYRSFAEYALRLDPHVTVLVGRNAVGKTNLVEALQLLTAGSSFRKPSSSELLRQ 65 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 G+P+ AR+ + + LE + + R N + L P Sbjct: 66 GAPAG---RARLLLEGEGRRLEMGLELAEGK--RSFTRNGKRT-TASGVRGVLPSVLFCP 119 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 + + RR LD ++ ++ + + +ER + RN LL + + + Sbjct: 120 DDLDMVKRSASARRAALDSFGVQLNDQYAKLLSTYERTVEQRNNLLRDCPP-ADLLEVWD 178 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-GKFDQSFCALKEE 246 +A G ++ + R ++ + +E + PH + G+ A+ E+ Sbjct: 179 ESLAVTGAQLLMHRRALLARIRGHFVEVYRAI-APHETPDVAYESTLGELGDEREAIAEQ 237 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + ++L R + TL+GPHR ++ D GS G+Q+ +++ +A ++ Sbjct: 238 FRRELLARRADELRRGMTLVGPHRDEIAFTI-DGRAARDFGSQGQQRSIVLAWKIAEVQV 296 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFM 365 + G P+LLLD++ + LD +R A+ V D Q +T T+ F D + + A+ + Sbjct: 297 TRDILGRPPLLLLDDVMSELDASRREAIMGFVAD-DIQTVITTTNLGYFTDRVLDRARVV 355 Query: 366 RI 367 + Sbjct: 356 HV 357 >gi|254435256|ref|ZP_05048763.1| hypothetical protein NOC27_2319 [Nitrosococcus oceani AFC27] gi|207088367|gb|EDZ65639.1| hypothetical protein NOC27_2319 [Nitrosococcus oceani AFC27] Length = 362 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 149/372 (40%), Gaps = 18/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+I FRN + L I G N GKT+ LEAI L GR FR Sbjct: 1 MHITHLDIRNFRNLKHIELHPSKGVNILSGANSSGKTSFLEAIYLLGLGRSFRTVQLISA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G S A+V+ + G ++ R+ +IN ++ +L L + + Sbjct: 61 IQAGMES-LRVVAKVKQVGGSHTAGVEFGPAGFRA----RINKDTVKKRSQLATQLPLLY 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 + + G RR++LD +F ++P ++R ++ RN +L SW Sbjct: 116 MSSYSHVVLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHVLR--VHKPSWQQ 173 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 ++ +++ G +I R ++ L + + F + + +F Q + Sbjct: 174 EINAWNKKLSTYGEQITSLREAILFKLQDSVSQL-----FTALAHQPISPVTMEFKQGWA 228 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + L + D + T GPHR+++ K + S G+QKV + L Sbjct: 229 RTV-RLEEILNESLNYDRAAGYTRYGPHRAEVAFYVDGKDVREIL-SRGQQKVFCYSLAL 286 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360 + A L+ T I L+D+ ++ LD D R L ++ +G Q+F T + + + Sbjct: 287 SQANLLYRTKEQNCIFLIDDFTSELDADHRKRLLTLLNKLGMQVFATTIESLGSEIKAHP 346 Query: 361 TAKFMRISNHQA 372 K + Q Sbjct: 347 NIKEFHVKLGQV 358 >gi|257783818|ref|YP_003179035.1| DNA replication and repair protein RecF [Atopobium parvulum DSM 20469] gi|257472325|gb|ACV50444.1| DNA replication and repair protein RecF [Atopobium parvulum DSM 20469] Length = 363 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 162/369 (43%), Gaps = 11/369 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K++ +++ FR +AS + AQ TIFVG N GKTN +EA+ L+ G FR+ + + + Sbjct: 3 LKVEHVSLYNFRCFASKEIDLSAQTTIFVGKNAAGKTNTVEALQLLTAGYSFRKPTPSQL 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + L + I E R R N + D ++ L Sbjct: 63 LLTDTSEAKIEISLTGDGRKLENTCIITERR-----RQFSKNGKKCQAAD-ISGTLMSIL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G + RR D + + + + + + RN+LL + D + Sbjct: 117 FNPDDLSMIKGGASYRREEFDDFGRQANKSYFKVFSTYIKTVEQRNKLLKSDWPDENLLD 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFL-DGKFDQSFCA 242 + + +A G + AR+ + L+ E Q+ + H++++ + + + S Sbjct: 177 AWDLSLARGGAILLHARIHLFERLAKKTCEIYQELSGGEHLEMNYISSIGEISLEASREE 236 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + +++ + L + R D +++ GPHR D+ K GS G+ + V++ + +A Sbjct: 237 ISDQFLQALNEIRIDDIRRQQSTKGPHRDDVEFLIEGKE-ARNFGSQGQIRTVVLALKMA 295 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNET 361 L G P+LLLD++ + LDED+R A+ Q +T T+ F + + E Sbjct: 296 EVLLSEEILGEKPLLLLDDVMSELDEDRRKAIMEFAFH-DIQTVITTTNLGYFSEEILEK 354 Query: 362 AKFMRISNH 370 A+ +R S+ Sbjct: 355 AQIVRFSDE 363 >gi|154707128|ref|YP_001423442.1| DNA replication and repair protein [Coxiella burnetii Dugway 5J108-111] gi|226737784|sp|A9KEV0|RECF_COXBN RecName: Full=DNA replication and repair protein recF gi|154356414|gb|ABS77876.1| DNA replication and repair protein [Coxiella burnetii Dugway 5J108-111] Length = 357 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 15/366 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +++FRN A + + +Q F G NG GKT+ILE+I +LS GR FR + + Sbjct: 4 IGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQ 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + F G + I + +E RD RCL+IN K L + L Sbjct: 64 DNTDRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLS 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 R RR+FLD ++F ++P +R ++ RN L + Sbjct: 120 AMSHRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAALK-AKLPLGEITHW 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + + E G +++ R ++ L + +Q + P L F S Sbjct: 179 DKMLVEDGERLHQLRQNVVTEFRPLFTQMLQ-QFLPAYPLIGHYFRGWSEKYS------- 230 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 ++L K D T GP R+D + D S G+QK+V + A L Sbjct: 231 LMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL-SQGQQKLVTYALHFAQGLL 289 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + TG +PI L+D++ A LD +KR+ + +V + SQ+F++G D + L + Sbjct: 290 LKEKTGISPIYLIDDLPAELDANKRDCVIDLVNYLESQVFISGIDPNEI-RLPPHSTLFH 348 Query: 367 ISNHQA 372 + + + Sbjct: 349 VKHGKV 354 >gi|83642920|ref|YP_431355.1| recombinational DNA repair ATPase (RecF pathway) [Hahella chejuensis KCTC 2396] gi|97180764|sp|Q2SQZ4|RECF_HAHCH RecName: Full=DNA replication and repair protein recF gi|83630963|gb|ABC26930.1| Recombinational DNA repair ATPase (RecF pathway) [Hahella chejuensis KCTC 2396] Length = 375 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 158/377 (41%), Gaps = 10/377 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + RN +SL+L A+ +F G+NG GK+++LE + L G FR Sbjct: 1 MGLSRIAFTNLRNISSLKLDTSARLLLFHGNNGSGKSSLLEGVYLLGRGASFRTKELDYA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F + I + + + ++IN R + EL L I Sbjct: 61 VSHLSDE-MVCFGEAVNEDAGKSFRIGVSRQKTGKLTRVRINGESARTLSELAAALPILI 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P +G ERRRF+D VF ++ + + ++ +L+ RN+LL G S S Sbjct: 120 VTPDTFGFINGGPGERRRFVDWGVFHVEHQFKVVWQNWRKLLLQRNKLLKSGNISRSELS 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + Q +I+ R L +++E + KE+ + + L + Sbjct: 180 AWDNQYVAYSDEISRYRDAYFAELKEILIESL-KESSEQTR-DIGDKLTITLSNGWYQND 237 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + +L + D T +GPHR+D+ V S G+QK ++ ++L+ Sbjct: 238 VNHMDQLASSVESDVKKGFTTLGPHRADIKVKVGGVHAKEVL-SRGQQKTLITHLYLSQL 296 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS----VFDSLNE 360 ++ T PI+L+D++ A LD + L + + G+Q+F+T DK +F N+ Sbjct: 297 EILRRRTNQRPIVLIDDVGAELDTGNQVTLLTRMLEKGAQVFVTVLDKQQSEYLFGHFNQ 356 Query: 361 TA--KFMRISNHQALCI 375 + + + Sbjct: 357 EYDTQMFHVEQGAVTKV 373 >gi|325915699|ref|ZP_08178004.1| DNA replication and repair protein RecF [Xanthomonas vesicatoria ATCC 35937] gi|325538116|gb|EGD09807.1| DNA replication and repair protein RecF [Xanthomonas vesicatoria ATCC 35937] Length = 344 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 138/347 (39%), Gaps = 13/347 (3%) Query: 29 HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI 88 + GDNG GKT++LEA+ ++ GR FR + + G+ EG + Sbjct: 1 MNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGASDLEVFVEWREGTGEAGER 60 Query: 89 SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148 S + R +++ + + L L + P + SG RRRFLD + Sbjct: 61 SRRAGLRHTGQEWTGRLDGEDVAQLGSLCAALAVITFEPGSHVLISGGGEPRRRFLDWGL 120 Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 F ++P + R ++ RN LL +G + + ++AE G + R+ + L Sbjct: 121 FHVEPDFLALWRRYARALKQRNALLKQG-AQPRMLDAWDHELAESGETLTSRRLRYLERL 179 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 ++ P + LS F G A L R+ D + T GP Sbjct: 180 QERLIPVATAI-APSLGLSALEFAPGWKRHEVS-----LADALLLARERDRQNGYTSQGP 233 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR+D + A S G+ K+ + LA A ++ G P++ LD++ + LD Sbjct: 234 HRADWAPRFDALPGKDAL-SRGQAKLTALACLLAQAEDFAHERGEWPVIALDDLGSELDR 292 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF---MRISNHQA 372 + ++ + + +Q+ +T T+ L + K + + + Sbjct: 293 HHQASVLQRLAAAPTQVLITATET--PPGLADAGKLLYRFHVEHGKV 337 >gi|293191014|ref|ZP_06609058.1| RecF protein [Actinomyces odontolyticus F0309] gi|292820701|gb|EFF79667.1| RecF protein [Actinomyces odontolyticus F0309] Length = 398 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 90/397 (22%), Positives = 154/397 (38%), Gaps = 31/397 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FR++ + T+ VG NG GKTN++EA+++LS R + + Sbjct: 1 MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL 60 Query: 65 TRIGSPSFFS----TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 RI + R + + I+LE ++ R ++N ++ E+ + Sbjct: 61 VRIPIDEAEAAPGGAVIRARVVIFGREQVIELEIVRGKANRA-RVNRAQVK-PREILGVV 118 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--- 177 R P + G RR FLD + + P H DF+R+ R R L+ Sbjct: 119 RTVVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAAQASL 178 Query: 178 -----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTG 230 D S + Q A L +I R +++ L H+ L+ Sbjct: 179 RRGQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHLAFDA 238 Query: 231 FLD-----------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 +D A E L R+ ++ L+G HR DL + Sbjct: 239 SVDRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLVGAHRDDLTLSLGA 298 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + + S GE V + + L L+S+ G PIL+LD++ A LD +R L + Sbjct: 299 MPVK-GYASHGESWSVALALRLGAFELLSD-DGDTPILILDDVFAELDSSRREGLA-ALA 355 Query: 340 DIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQALCI 375 QI +T + DSL+ A +R+ + I Sbjct: 356 SKAEQIIVTCAVAGDLPDSLDHHALHVRLDPERGTVI 392 >gi|292490173|ref|YP_003525612.1| DNA replication and repair protein RecF [Nitrosococcus halophilus Nc4] gi|291578768|gb|ADE13225.1| DNA replication and repair protein RecF [Nitrosococcus halophilus Nc4] Length = 362 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 76/370 (20%), Positives = 146/370 (39%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L+I FRN + IF G NG GKT++LEAI L GR FR + A V Sbjct: 1 MHIAHLDIRNFRNLEHIEFYPAKGLNIFTGANGSGKTSLLEAIYLLGLGRSFRSSQLASV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R S + + + ++ + R+ +IN ++ +L L + + Sbjct: 61 VRGNMKSLRVVARVKQTTDAFQIVGVEFSSTGFRA----RINGNAVKRRSQLAAQLPLLY 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWC 183 + I G RR++LD +F ++ R + R ++ RN L Sbjct: 117 MSSYSHLILDGGPRYRRQWLDWGLFHLESNFRDLWWRYHRALKQRNHALRTQMPSWRREI 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + ++A G ++ R +++ L + + G + +F + + Sbjct: 177 DAWDRELATYGEQVTSFREAILSQLQESVSQLFAVLA------HQVGPVTMEFKRGWSRT 230 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L D + T GPHR+++ K + S G+QKV + L Sbjct: 231 I-ALGEVLKATLDYDRAAGYTRYGPHRAEVAFYASGKDVRDIL-SRGQQKVFCYSLALGQ 288 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNET 361 L+ I L+D+ ++ LD D R + ++ +G Q+F+T + + + ++ Sbjct: 289 VELLCKIKEQHCIFLIDDFTSELDADHRRRVLALLNQLGIQVFVTTVETLDNELKAYPDS 348 Query: 362 AKFMRISNHQ 371 + + + Sbjct: 349 QQ-FHVELGK 357 >gi|169794209|ref|YP_001712002.1| recombination protein F [Acinetobacter baumannii AYE] gi|184156323|ref|YP_001844662.1| recombination protein F [Acinetobacter baumannii ACICU] gi|213155388|ref|YP_002317433.1| DNA replication, recombination and repair protein [Acinetobacter baumannii AB0057] gi|215481764|ref|YP_002323946.1| DNA replication and repair protein recF [Acinetobacter baumannii AB307-0294] gi|260558095|ref|ZP_05830306.1| recombinational DNA repair ATPase [Acinetobacter baumannii ATCC 19606] gi|301345943|ref|ZP_07226684.1| recombination protein F [Acinetobacter baumannii AB056] gi|301512867|ref|ZP_07238104.1| recombination protein F [Acinetobacter baumannii AB058] gi|301594682|ref|ZP_07239690.1| recombination protein F [Acinetobacter baumannii AB059] gi|332854715|ref|ZP_08435502.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6013150] gi|332865595|ref|ZP_08436435.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6013113] gi|332873309|ref|ZP_08441264.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6014059] gi|259563348|sp|B7GUX7|RECF_ACIB3 RecName: Full=DNA replication and repair protein recF gi|259563349|sp|B7IBH5|RECF_ACIB5 RecName: Full=DNA replication and repair protein recF gi|259563350|sp|B2HZA5|RECF_ACIBC RecName: Full=DNA replication and repair protein recF gi|259563352|sp|B0VAF5|RECF_ACIBY RecName: Full=DNA replication and repair protein recF gi|169147136|emb|CAM84995.1| DNA replication, recombinaison and repair protein [Acinetobacter baumannii AYE] gi|183207917|gb|ACC55315.1| Recombinational DNA repair ATPase (RecF pathway) [Acinetobacter baumannii ACICU] gi|213054548|gb|ACJ39450.1| DNA replication, recombination and repair protein [Acinetobacter baumannii AB0057] gi|213987177|gb|ACJ57476.1| DNA replication and repair protein recF [Acinetobacter baumannii AB307-0294] gi|260408449|gb|EEX01756.1| recombinational DNA repair ATPase [Acinetobacter baumannii ATCC 19606] gi|322506192|gb|ADX01646.1| recF, DNA replication, recombinaison and repair protein [Acinetobacter baumannii 1656-2] gi|332727872|gb|EGJ59274.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6013150] gi|332735247|gb|EGJ66324.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6013113] gi|332738515|gb|EGJ69387.1| DNA replication and repair protein RecF [Acinetobacter baumannii 6014059] Length = 360 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 153/373 (41%), Gaps = 23/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR + Sbjct: 1 MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G+ + + +++N + +L K L + Sbjct: 61 IQYEADDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P I + RR+ LD ++F ++P + R ++ RN LL + Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +++ G ++ R+ ++ + + + P +++ L +Q Sbjct: 173 EPWNKMLSDYGEILHSQRLSIVEQWNVYFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + + D R T GPHR+DL + S G++K++++ + L+ Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-SRGQKKLLIIALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359 ++ + ++LLD+++A LD + L ++ +GSQ+FMT D K L+ Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342 Query: 360 ETAKFMRISNHQA 372 + + + + Q Sbjct: 343 ISYQLFSVESGQV 355 >gi|254773056|ref|ZP_05214572.1| recombination protein F [Mycobacterium avium subsp. avium ATCC 25291] Length = 385 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 153/376 (40%), Gaps = 22/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + Sbjct: 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + ++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G ERRR+LD + P D+++++R R LL D Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGD 176 Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234 ++++AE G ++ AR++++N L+ + + Q + L Sbjct: 177 RGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGA 236 Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 A +Y L R + L+GPHR DL + ++ + S Sbjct: 237 AASAEVNAGDRDYLEAALLAGLAARRDAEMERGMCLVGPHRDDLELWLGER-VPKGFASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + + LA L+ P+LLLD++ A LD +R A V + Q+ +T Sbjct: 296 GESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELDAARRRA-LAAVAESAEQVLVTA 353 Query: 350 TDKSVFDSLNETAKFM 365 + + + Sbjct: 354 AVLEDIPTGWQARRLF 369 >gi|262374721|ref|ZP_06067993.1| recombinational DNA repair ATPase [Acinetobacter junii SH205] gi|262310377|gb|EEY91469.1| recombinational DNA repair ATPase [Acinetobacter junii SH205] Length = 360 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 154/373 (41%), Gaps = 23/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I LNI RN ++ L IF G NG GKT+ILE+I L+ GR FR Sbjct: 1 MQITRLNIERVRNLKTVALTELQPFNIFYGANGSGKTSILESIHLLATGRSFRTHIPKHY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + +K ++ +++N I +L K L + Sbjct: 61 IQHQCNDAIVFA-----QSATERVGMKKLISGEQ---LIKVNGDTIATQGQLAKLLPLQH 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P I + RR+ LD ++F ++P + R ++ RN LL S Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNSLLKTRRNLSLSEL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++E G ++ R+ ++ + E +Q+ P I + L + +Q Sbjct: 173 EPWNKMLSEYGEILHSQRISIVEQWNQYFREDLQQL-LPDIDIELEYYSGFHTEQG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + D R T GPHR+DL + S G++K++++ + L+ Sbjct: 228 ---LFQDLIQQHQKDLERRYTEYGPHRADLRLKTPQGNADDVL-SRGQKKLLIMALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS----VFDSLN 359 ++ + ++LLD+++A LD + L ++ +GSQ+F+T D + L+ Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDVAAQQRLIERLSQLGSQVFLTTLDHASVLKHLHDLS 342 Query: 360 ETAKFMRISNHQA 372 + + + + Q Sbjct: 343 ISFQLFHVVHGQV 355 >gi|257065524|ref|YP_003151780.1| DNA replication and repair protein RecF [Anaerococcus prevotii DSM 20548] gi|256797404|gb|ACV28059.1| DNA replication and repair protein RecF [Anaerococcus prevotii DSM 20548] Length = 359 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 156/370 (42%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++IK L ++ FRNY + F+ IF+GDN GKTN+LE++ +L+ F++ D+ Sbjct: 1 MRIKDLKLNNFRNYFYENVEFNKDSNIFIGDNAQGKTNLLESVYYLANASSFKKIRDKDI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + ++ I+++ D + + +N V +L +I Sbjct: 61 VRFGQSQ-MKLAGTIRKGRSFKEVFIEVKDND----KSIFVNGVKYDRRKDLRSLFKIVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182 P I RR +D ++ ID ++ D+++++ RN+LL + Sbjct: 116 FTPEDLGIIKDGPNRRRDLIDEIIEEIDLSYKANKRDYDKILYQRNKLLKKQKAPYFKEQ 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + + +L KI R + I + E+ +L L+ D + Sbjct: 176 LEAFDKSLTKLSYKIYKTRDKFIKIVDKFASEFHSSLTENKEELKLSYKADIE-----AK 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EY + R +D + G HR ++ + K T + S G+Q+ ++ I LA Sbjct: 231 SLTEYEEVFRSARDLDFKYLTSQRGIHRDEIEISINGKN-TKSFASQGQQRSAILNIRLA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 RLI TG ++L D++ + LDE + L + G Q +T T+ + + + Sbjct: 290 EVRLIKEVTGDEAVILFDDVFSELDEKRSMFLLENLK--GFQTIITATNTKSLEYV-DRE 346 Query: 363 KFMRISNHQA 372 K I + + Sbjct: 347 KISYILDGKI 356 >gi|159900239|ref|YP_001546486.1| DNA replication and repair protein RecF [Herpetosiphon aurantiacus ATCC 23779] gi|226737805|sp|A9B775|RECF_HERA2 RecName: Full=DNA replication and repair protein recF gi|159893278|gb|ABX06358.1| DNA replication and repair protein RecF [Herpetosiphon aurantiacus ATCC 23779] Length = 385 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 163/387 (42%), Gaps = 28/387 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +FR Y SL L +F G N GKT ILEA+ +L+ R R + ++ Sbjct: 1 MYVSRLQLQDFRIYRSLNLALPPGVCLFYGANAAGKTTILEALYYLATTRSLRASVEREL 60 Query: 65 TRIGSPS------FFSTFARVEGMEGLADISIKLETRDD---------RSVRCLQINDVV 109 + + F A ++ +I++ + + + ++IN + Sbjct: 61 IALEAAGDLGLPPFARLAASLQPQPEAEMQTIEIVLQRKFGADGDLAPTTSKTIRINKIA 120 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 R +D L LR+ P + +G ERRR+LD + ID R+ R + + +++ R Sbjct: 121 RRALD-LIGQLRVVMFAPQDLELVTGAPAERRRYLDVTLSQIDGRYVRALSRYNQVLTQR 179 Query: 170 NRLLTEGY-----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 N LL + + ++A+ GV + R + L L + + + Sbjct: 180 NGLLRTSRERGRAASEQDLAFWDEELAKAGVYVLRERRRAVTTLDQLAQRLYAEISGSDL 239 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 L L D + + L R+ + TLIGPHR DL + ++ + Sbjct: 240 DLRLNY-----LDTTPAHDVPSFQAALKQLRREERERGVTLIGPHRDDLSIQLAEREVG- 293 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 + GS G+Q+ + + LA A L+ + TG P+LLLD++ + LD+ +R L + Q Sbjct: 294 SFGSRGQQRASTLALRLAEAELMHSRTGDRPVLLLDDLLSELDQKRREHLLTTIVRPQQQ 353 Query: 345 IFMTGTDKSVFD-SLNETAKFMRISNH 370 +T TD F + M + + Sbjct: 354 TLITATDLDDFSPNFLSQITRMHVDHG 380 >gi|218245953|ref|YP_002371324.1| recombination protein F [Cyanothece sp. PCC 8801] gi|257059001|ref|YP_003136889.1| recombination protein F [Cyanothece sp. PCC 8802] gi|226737787|sp|B7K127|RECF_CYAP8 RecName: Full=DNA replication and repair protein recF gi|218166431|gb|ACK65168.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 8801] gi|256589167|gb|ACV00054.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 8802] Length = 380 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 90/383 (23%), Positives = 173/383 (45%), Gaps = 21/383 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++S FRNY ++ FD Q TI +G+N GK+N+LEA+ L+ + R D Sbjct: 1 MYLKTLHLSAFRNYREQQIEFDHQKTILLGNNAQGKSNVLEAVELLATLKSHRTNRDRDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + A++E G +D++I L + R L +N +R E L Sbjct: 61 ILEG-ETIGQITAKIERNYGTSDLAITLRSPGR---RTLTLNHEHLRRHLEFLGSLNAVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 + G RR +LD ++ ++P + + + +++R RN LL + Sbjct: 117 FSSLDLDLVRGSPDARRNWLDTLLVQLEPIYAHILQQYYQVLRQRNALLKDLRKTATEEG 176 Query: 178 ------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 + + Q+AE G ++ R +I L L + Q + L + Sbjct: 177 KSDHLSAQMTQLHLWDQQLAETGSRVTRRRARVIERLIPLAQIWHQNISGGQEILQIDYL 236 Query: 232 LDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + + +++ + K+ R + T++GPHR D+ ++GS G Sbjct: 237 PNVSWQEDEPLEVQQAFLAKIEQRRLAEQQLGTTVVGPHRDDVEFTINGTPAK-SYGSQG 295 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ +++ + LA +LI G P+LLLD++ A LD +++N L ++ Q F+T T Sbjct: 296 QQRTLVLALKLAELKLIEEVIGEPPLLLLDDVLAELDPNRQNQLLEVIQG-RFQTFITTT 354 Query: 351 DKSVFDS-LNETAKFMRISNHQA 372 FD+ ++++ +++ + Sbjct: 355 YLHSFDAQWLQSSQILKVEAGKI 377 >gi|254515867|ref|ZP_05127927.1| DNA replication, recombinaison and repair protein [gamma proteobacterium NOR5-3] gi|219675589|gb|EED31955.1| DNA replication, recombinaison and repair protein [gamma proteobacterium NOR5-3] Length = 370 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 145/373 (38%), Gaps = 16/373 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + LNI RN L + H + G NG GKT++LEA L R FR + Sbjct: 4 LASLNIHHLRNLTEASLGPLSLHNVIYGINGSGKTSLLEAAHILGTARSFRAGGAKSLIT 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G ++ R G + ++ + S+R R V +L L + + Sbjct: 64 HGEQTYVVQGNRESPGGGCVSLGVQRQKGGGMSLRVA---GEPSRSVSQLADELPLLLIN 120 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 + G RRRF+D VF ++ R F+R + RN LL G D+S Sbjct: 121 ADSFDLLVGEPANRRRFMDWGVFHVEHNLRDHRRRFQRALTQRNHLLRRGKLDASELEVW 180 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 +A ++ R + AL + V E P I G +D + + + A Sbjct: 181 TRDLAVHAELVSAGRDRFLAALKEVFEPLV-NELAPEI-----GPVDLAYRRGWDASL-G 233 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA L D T GP R+D+ V + S G+QK+++ + LA ++ Sbjct: 234 YADALQRSLASDQEQGFTQSGPQRADIRVTVGGYSAADTL-SRGQQKLLICALKLAQGQI 292 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS--LNETAK- 363 ++ G + L+D++ + LD ++ + R + + Q +T +S L A+ Sbjct: 293 LAGQRGG-VLYLIDDLPSELDAERCERVCRALAAMRVQTLITCVSRSAIPVEWLGSGAEV 351 Query: 364 -FMRISNHQALCI 375 + + + Sbjct: 352 AMFHVEQGRVTLV 364 >gi|259563367|sp|A3M0Q6|RECF_ACIBT RecName: Full=DNA replication and repair protein recF gi|193075923|gb|ABO10500.2| DNA replication recombination and repair protein [Acinetobacter baumannii ATCC 17978] Length = 360 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 153/373 (41%), Gaps = 23/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR + Sbjct: 1 MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G+ + + +++N + +L K L + Sbjct: 61 IQYEADDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P I + RR+ LD ++F ++P + R ++ RN LL + Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +++ G ++ R+ ++ + + + P +++ L +Q Sbjct: 173 EPWNKMLSDYGEILHSQRLSIVEQWNVYFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + + D R T GPHR+DL + S G++K++++ + L+ Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-SRGQKKLLIIALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359 ++ + ++LLD+++A LD + L ++ +GSQ+FMT D K L+ Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342 Query: 360 ETAKFMRISNHQA 372 + + + + Q Sbjct: 343 ISYQLFSVESGQV 355 >gi|239503907|ref|ZP_04663217.1| recombination protein F [Acinetobacter baumannii AB900] gi|323516068|gb|ADX90449.1| recombination protein F [Acinetobacter baumannii TCDC-AB0715] Length = 360 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 152/373 (40%), Gaps = 23/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR + Sbjct: 1 MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G+ + + +++N + +L K L + Sbjct: 61 IQYEADDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P I + RR+ LD ++F ++P + R ++ RN LL + Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ G ++ R+ ++ + + + P +++ L +Q Sbjct: 173 EPWNKMLSNYGEILHSQRLSIVEQWNVYFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + + D R T GPHR+DL + S G++K++++ + L+ Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-SRGQKKLLIIALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359 ++ + ++LLD+++A LD + L ++ +GSQ+FMT D K L+ Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342 Query: 360 ETAKFMRISNHQA 372 + + + + Q Sbjct: 343 ISYQLFSVESGQV 355 >gi|169632032|ref|YP_001705768.1| recombination protein F [Acinetobacter baumannii SDF] gi|259563351|sp|B0VMK2|RECF_ACIBS RecName: Full=DNA replication and repair protein recF gi|169150824|emb|CAO99424.1| DNA replication, recombinaison and repair protein [Acinetobacter baumannii] Length = 360 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 76/373 (20%), Positives = 153/373 (41%), Gaps = 23/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR + Sbjct: 1 MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G+ + + +++N + +L K L + Sbjct: 61 IQYEADDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P I + RR+ LD ++F ++P + R ++ RN LL + Sbjct: 113 IDPQSTEIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ G ++ R+ ++ + + + P +++ L +Q Sbjct: 173 EPWNKMLSNYGEILHSQRLSIVEQWNVYFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + + D R T GPHR+DL + S G++K++++ + L+ Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTLFGHADDVL-SRGQKKLLIIALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS----VFDSLN 359 ++ + ++LLD+++A LD + L ++ +GSQ+FMT D++ L+ Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDRASVKKHLHDLS 342 Query: 360 ETAKFMRISNHQA 372 + + + + Q Sbjct: 343 ISYQLFSVESGQV 355 >gi|293611382|ref|ZP_06693678.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826254|gb|EFF84623.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123496|gb|ADY83019.1| DNA replication, recombinaison and repair protein [Acinetobacter calcoaceticus PHEA-2] Length = 360 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 154/373 (41%), Gaps = 23/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR + Sbjct: 1 MHLTRLNIERVRNLKTVALQGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G+ + + +++N + +L K L + Sbjct: 61 IQYSAEDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P I + RR+ LD ++F ++P + R ++ RN LL + Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNISLADL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +++ G ++ R+ ++ + + + P +++ L +Q Sbjct: 173 EPWNKMLSDYGEILHSQRLSIVEQWNVFFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + + D R T GPHR+DL + + S G++K++++ + L+ Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADVVL-SRGQKKLLIIALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359 ++ + ++LLD+++A LD + L ++ +GSQ+FMT D K L+ Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342 Query: 360 ETAKFMRISNHQA 372 + + + + Q Sbjct: 343 ISYQLFNVESGQV 355 >gi|42521653|ref|NP_967033.1| DNA repair and genetic recombination protein [Bdellovibrio bacteriovorus HD100] gi|39574183|emb|CAE77687.1| DNA repair and genetic recombination protein [Bdellovibrio bacteriovorus HD100] Length = 374 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 88/380 (23%), Positives = 176/380 (46%), Gaps = 18/380 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FRNY + L F + +F+G+NG GKTN+LEA+ +S G FR + + + Sbjct: 1 MIFERLRLVNFRNYRDVVLSFSPRVNVFLGENGQGKTNLLEAMYMISQGDSFRYSDNSTL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + ++ + D+ KL+ +S + L +ND + D + K Sbjct: 61 INTNTSE-----SVIQALITQNDLHYKLKLGLSKSRKVLTLNDKRVNSAD-IRKIFASVV 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GY 177 P + RR +D ++ D ++ + + D+ + ++ RN++L Sbjct: 115 FSPESLSSIKEGADHRRELVDELLVTFDRKNAQLIADYRKALKTRNKILKNFLEGLQDKV 174 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-PHIKLSLTGFLDGKF 236 + S+ Q L + AR+ ++ LS +Q + + +S+ + + Sbjct: 175 VTQNLLESLNPQFVRLATDLTHARITALHGLSKDFNNAMQYISGNSSVDISVEYLVSDQN 234 Query: 237 DQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 SF ++ K+L + + S +L+GPH+ D++ Y K S G+Q+ Sbjct: 235 AVSFTREEVENAITKRLRELHDAELSSGTSLVGPHKHDIVFLYGQKDSRF-FCSQGQQRA 293 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 +++ +A G P+L+LD++ + LD+ KR+AL + +I +QIF+T TD ++ Sbjct: 294 IILSFKMAQIVYHRKAHGTYPVLMLDDVLSELDKAKRDALITFLHEINTQIFVTTTDFTL 353 Query: 355 FDSLN-ETAKFMRISNHQAL 373 +S + + + +RI + Q L Sbjct: 354 PESFSLDQLRVVRIKDGQIL 373 >gi|330835986|ref|YP_004410627.1| DNA replication and repair protein recF [Spirochaeta coccoides DSM 17374] gi|329747889|gb|AEC01245.1| DNA replication and repair protein recF [Spirochaeta coccoides DSM 17374] Length = 359 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 145/367 (39%), Gaps = 12/367 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L+I FRN + DA+ + VG+NG GKTN LEA+ L G FR + + Sbjct: 1 MRILSLDIHCFRNIRKASVDTDARSVMLVGENGQGKTNFLEALYVLCYGTSFRTPNLREA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F V+ +I +K + R + I+ I EL + Sbjct: 61 VSHDGRGFSVKADFVDDSGNHHEIQVK----HVQGKRSIFIDRKEIYDRKELIYTIPCIV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 G RRRF D+ + +P + ++R RN L EG S Sbjct: 117 FCHDDIEFVRGEPEARRRFFDQTMSMYNPLFFDDSRRYRNILRQRNAALKEGRL--SLVP 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A G+ I AR + + + + + +++S+ K ++ + Sbjct: 175 IYDFQLARYGMSIQKARKAAVKEFNDIFPRMYRDVSGTDLEISVEYQPSWKMAENAEDAE 234 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E ++ L + D + T G HR IV D+ + GSTG+ ++ + + +A A Sbjct: 235 EILSRAL----ERDVRMQTTCSGVHRDKFIVKDADRPFSQT-GSTGQLRLASLILRMAQA 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363 TG P+LL+D++ LD +R + D F ++ F SL +E Sbjct: 290 GFFFGKTGKEPVLLIDDVLLELDVTRRGRFLSHIEDYSQAFFTFLPEEKYFSSLEDEKML 349 Query: 364 FMRISNH 370 + Sbjct: 350 SYTVEGG 356 >gi|154508242|ref|ZP_02043884.1| hypothetical protein ACTODO_00736 [Actinomyces odontolyticus ATCC 17982] gi|153797876|gb|EDN80296.1| hypothetical protein ACTODO_00736 [Actinomyces odontolyticus ATCC 17982] Length = 398 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 90/397 (22%), Positives = 151/397 (38%), Gaps = 31/397 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FR++ + T+ VG NG GKTN++EA+++LS R + + Sbjct: 1 MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL 60 Query: 65 TR--IGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R I A + + I+LE ++ R +IN ++ E+ + Sbjct: 61 VRIPIDEAEAAPGGAVIRARVVTFGREQVIELEIVRGKANRA-RINRAQVK-PREILGIV 118 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--- 177 R P + G RR FLD + + P H DF+R+ R R L+ Sbjct: 119 RTVVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAAQASL 178 Query: 178 -----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTG 230 D S + Q A L +I R +++ L H+ L+ Sbjct: 179 RRGQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHLAFDA 238 Query: 231 FLD-----------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 +D A E L R+ ++ L G HR DL + Sbjct: 239 SVDRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLAGAHRDDLALSLGA 298 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + + S GE V + + L L+S+ G PIL+LD++ A LD +R L + Sbjct: 299 MPVK-GYASHGESWSVALALRLGAFELLSD-DGDTPILILDDVFAELDSSRREGLA-ALA 355 Query: 340 DIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQALCI 375 QI +T + SL+ A +R+ + I Sbjct: 356 SKAEQIIVTCAVAGDLPASLDHHALHVRLDPERGTVI 392 >gi|260553770|ref|ZP_05826040.1| recombinational DNA repair ATPase [Acinetobacter sp. RUH2624] gi|260405074|gb|EEW98574.1| recombinational DNA repair ATPase [Acinetobacter sp. RUH2624] Length = 360 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 153/373 (41%), Gaps = 23/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR + Sbjct: 1 MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + G+ + + +++N + +L K L + Sbjct: 61 IQYEADDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P I + RR+ LD ++F ++P + R ++ RN LL + Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++ G ++ R+ ++ + + ++ P +++ L +Q Sbjct: 173 EPWNKMLSNYGEILHSQRLSIVEQWNVYFQNDL-RQLLPDLEIELEYSPGFHTEQG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + + D R T GPHR+DL + S G++K++++ + L+ Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-SRGQKKLLIIALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359 ++ + ++LLD+++A LD + L ++ +GSQ+FMT D K L+ Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342 Query: 360 ETAKFMRISNHQA 372 + + + + Q Sbjct: 343 ISYQLFSVESGQV 355 >gi|328954617|ref|YP_004371950.1| DNA replication and repair protein RecF [Coriobacterium glomerans PW2] gi|328454941|gb|AEB06135.1| DNA replication and repair protein RecF [Coriobacterium glomerans PW2] Length = 375 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 152/371 (40%), Gaps = 15/371 (4%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 + L + ++R++ L D T+ G N VGKTN++EA+ L+ G+ FR+AS +++ R Sbjct: 6 RSLRLRDYRSFERFSLDLDPGTTVLSGRNAVGKTNLIEALQLLTFGQSFRKASPSELIRD 65 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 G+ + G DI + L + R N R + + P Sbjct: 66 GAERAVLD---LNLSGGGRDIDLGLVATAGK--RAFSRNGKPCRASS-IRGVMPSVLFCP 119 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 + + RR LD + R+ + + + R++ RN LL + + + Sbjct: 120 DHLDMVKRSAGVRRGALDDFGTQLSARYAQLVGSYGRIVEQRNALLRDVALSDGLLDAWD 179 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFD-----QSFC 241 + E G + R+ ++ L + + + + + D Sbjct: 180 DALIETGCALIAHRISLLARLRAAMRRIHASIAPGEQMDVGYRASICPTEDLLTERADRA 239 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L+ Y L R + +L+GPHR ++ + + S G+Q+ +++ + Sbjct: 240 TLERRYRGALAAARPDEIRRCVSLMGPHRDEIAFTVAGRD-ARSFASQGQQRTLVLSWKI 298 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNE 360 A + G P+LLLD++ + LDE +R+A+ V + G Q ++ T+ F S+ Sbjct: 299 AEVDVACEILGAPPLLLLDDVMSELDEPRRSAVMEFVEE-GIQTVISTTNLGYFSSSMLR 357 Query: 361 TAKFMRISNHQ 371 AK + I N + Sbjct: 358 RAKVVTIGNER 368 >gi|6969272|gb|AAF33693.1| putative recF [Mycobacterium avium subsp. paratuberculosis] Length = 385 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 153/376 (40%), Gaps = 22/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + Sbjct: 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + ++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G ERRR+LD + P D+++++R R LL D Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRSD 176 Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234 ++++AE G ++ AR++++N L+ + + Q + L Sbjct: 177 RGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGA 236 Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 A +Y L R + L+GPHR DL + ++ + S Sbjct: 237 AASAEVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQ-VAKGFASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + + LA L+ P+LLLD++ A LD +R A V + Q+ +T Sbjct: 296 GESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELDAARRRA-LAAVAESAEQVLVTA 353 Query: 350 TDKSVFDSLNETAKFM 365 + + + Sbjct: 354 AVLEDIPTGWQARRLF 369 >gi|41406101|ref|NP_958937.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis K-10] gi|45645207|sp|Q9L7L5|RECF_MYCPA RecName: Full=DNA replication and repair protein recF gi|41394449|gb|AAS02320.1| RecF [Mycobacterium avium subsp. paratuberculosis K-10] Length = 385 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 153/376 (40%), Gaps = 22/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + Sbjct: 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + ++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G ERRR+LD + P D+++++R R LL D Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGD 176 Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234 ++++AE G ++ AR++++N L+ + + Q + L Sbjct: 177 RGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGA 236 Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 A +Y L R + L+GPHR DL + ++ + S Sbjct: 237 AASAEVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQ-VAKGFASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + + LA L+ P+LLLD++ A LD +R A V + Q+ +T Sbjct: 296 GESWSLALSLRLAAFELL-RADESDPVLLLDDVFAELDAARRRA-LAAVAESAEQVLVTA 353 Query: 350 TDKSVFDSLNETAKFM 365 + + + Sbjct: 354 AVLEDIPTGWQARRLF 369 >gi|330994266|ref|ZP_08318194.1| DNA replication and repair protein recF [Gluconacetobacter sp. SXCC-1] gi|329758733|gb|EGG75249.1| DNA replication and repair protein recF [Gluconacetobacter sp. SXCC-1] Length = 374 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 193/368 (52%), Gaps = 7/368 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L +++FRNY L T+ G NG GKTN+LEA+S L+PGRG R A ++ R Sbjct: 4 VNRLVLTDFRNYRHLSWRPQRAVTVITGPNGSGKTNLLEALSLLAPGRGLRGARMDELPR 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVVIRVVDELNKHLRIS 123 G + + A V + G + + L T D R +++ +R D ++ + Sbjct: 64 HG-EALWGIAADVADLPGPDGLPVSLATGADPLRPERRTFRVDGQTLRNRDGISGYFAAV 122 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P MDR+F + RRRFLDR+V A++P H R + +R M R R+L + D W Sbjct: 123 WLTPQMDRLFQEGAAGRRRFLDRLVLALEPGHAREVAAHDRAMLQRGRVLAQYGADPHWL 182 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242 +++E MA V AR +M+ L++ + + FP +L+L + + + A Sbjct: 183 AALERTMARHAVAATAARADMVARLNADGQALL--DGFPAARLALDCVIARRLAHEPALA 240 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ A+ L R +D + G HR+DL + STG+QK +LVGI L+ Sbjct: 241 VEDWLAECLAGTRAVDRQRGGSRFGAHRADLHMADRLTDRPAGQSSTGQQKALLVGIILS 300 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HAR+++ G AP+LLLDE HLD +R+ALF + + + + +TGTD+ FD L ++A Sbjct: 301 HARILTACRGQAPLLLLDEPLVHLDAARRDALFHAMGRMRTGVMLTGTDREQFDPLRQSA 360 Query: 363 KFMRISNH 370 +F+ Sbjct: 361 EFVTPGEG 368 >gi|325926217|ref|ZP_08187575.1| DNA replication and repair protein RecF [Xanthomonas perforans 91-118] gi|325543399|gb|EGD14824.1| DNA replication and repair protein RecF [Xanthomonas perforans 91-118] Length = 344 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 73/345 (21%), Positives = 133/345 (38%), Gaps = 9/345 (2%) Query: 29 HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI 88 + GDNG GKT++LEA+ ++ GR FR + + G+ EG + Sbjct: 1 MNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGANDLEVFVEWKEGNGAAGER 60 Query: 89 SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148 + + R +++ + + L L + P + SG RRRFLD + Sbjct: 61 TRRAGLRHSGQEWTGRLDGEDVAQLGALCAALAVVTFEPGSHVLISGGGEPRRRFLDWGL 120 Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 F ++P + R ++ RN LL +G + + ++AE G + R + L Sbjct: 121 FHVEPDFLTMWRRYARALKQRNALLKQG-AQPRMLDAWDHELAESGESLTSRRTRYLERL 179 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 ++ P + LS F G A L R+ D + T GP Sbjct: 180 QERLVPVADAI-APSLGLSALTFAPGWKRHEVS-----LADALLLARERDRQNGYTSQGP 233 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR+D + + A S G+ K+ + LA A + G P++ LD++ + LD Sbjct: 234 HRADWVPSFQALPGRDAL-SRGQAKLSALACLLAQAEDFAYERGEWPVIALDDLGSELDR 292 Query: 329 DKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAKFMRISNHQA 372 + + + + +Q+ +T T+ + + + Sbjct: 293 HHQGRVLQRLASAPAQVLITATETPPGLADAGALLQQFHVEHGHI 337 >gi|254412109|ref|ZP_05025884.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus chthonoplastes PCC 7420] gi|196181075|gb|EDX76064.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus chthonoplastes PCC 7420] Length = 382 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 87/384 (22%), Positives = 168/384 (43%), Gaps = 22/384 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + +FRNY + F+A TI VG+N GK+N+LEA+ LS + R ++ Sbjct: 1 MYLKCLKLRQFRNYRDCLVNFEAPKTILVGNNAQGKSNLLEAVELLSTLKSHRSGRDREM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A +E G ++ + L ++ R + +N +R + L Sbjct: 61 VLEDASMG-QIQALLERAYGSVELGLTLRSQGR---RTVALNRESLRRQLDFLGILNAVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 + G RR +LD ++ ++P + + + +++R RN LL Sbjct: 117 FSSLDLDLVRGSPERRRNWLDSILTQLEPIYAYILQQYNQVLRQRNALLKTIRKQEEERT 176 Query: 183 ------------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 + +AQ+A G ++ R ++ L+ L + + L +T Sbjct: 177 PEGVISKQPQTELALWDAQLATAGSRVTRRRARVLQRLAPLAQSWHSSISGKTELLEVTY 236 Query: 231 FLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 + + A+++ + KL R + TL+GPHR D+ ++ ++GS Sbjct: 237 APNVNLEKDDPEAVQQAFLDKLHHRRFPEQRQGITLVGPHRDDVEFTI-NQTPARSYGSQ 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+Q+ +++ + LA +LI G P+LLLD++ A LD +++N L + D Q +T Sbjct: 296 GQQRTLVLALKLAELKLIEEVVGEPPLLLLDDVLAELDPNRQNQLLDAIQD-RFQTLITT 354 Query: 350 TDKSVFDS-LNETAKFMRISNHQA 372 T FD+ +++ + + Q Sbjct: 355 THLGAFDAQWLNSSQILSVQAGQI 378 >gi|318079376|ref|ZP_07986708.1| recombination protein F [Streptomyces sp. SA3_actF] Length = 312 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 80/317 (25%), Positives = 129/317 (40%), Gaps = 17/317 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + + T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F A +G ++LE R+ R +R D L +R Sbjct: 61 VRAGAERAFVRAAVTQGERSQL---VELEINPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233 D S + +A G ++ R ++I AL L+ + ++ L Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLARRTDLIAALQPLVDKTYEQLAPGGGPALLEYRPSAP 236 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G Q + L + RK + TL+GPHR ++ + S GE Sbjct: 237 GT-AQGREEFYAQLLAALGEVRKQEIERGVTLVGPHRD-DLLLKLGDLPAKGYASHGESW 294 Query: 294 VVLVGIFLAHARLISNT 310 + + LA L+ Sbjct: 295 SYALALRLASYDLLRAE 311 >gi|121998015|ref|YP_001002802.1| DNA replication and repair protein RecF [Halorhodospira halophila SL1] gi|121589420|gb|ABM62000.1| DNA replication and repair protein RecF [Halorhodospira halophila SL1] Length = 349 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 148/365 (40%), Gaps = 21/365 (5%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 + L + FRN A +L + G NG GKT++LEAI FLS R FR + Sbjct: 2 ERLEVHGFRNLADTQLRPHPHLNVVTGPNGAGKTSLLEAIYFLSRVRSFRTRQNDRLIGW 61 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 G+ R G A L++N L L + + Sbjct: 62 GAEEARVVAVRGHDRLGAARTP---------GHTRLRLNGADAHTRSALAARLPVQLMNT 112 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 R+ RR+FLD F ++P +R ++ +R RN L G D + Sbjct: 113 EHQRLLLDGPRVRRQFLDWGTFHLEPDYRELAQRYQHALRQRNAALRVG--DRRSEQAWT 170 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 + +++AR I AL + E+ ++ L L + + + Sbjct: 171 PVLIRCAAAVDVARQRFIEALRPIWSEF-ARQWLGLESLELRYYRGAAAELPWE------ 223 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 + L + + D + T GPHR+DLI+ D+ S G+QK+++V + +A +L Sbjct: 224 -RVLDEQLERDRTAGFTHRGPHRADLILS-RDRIPAADALSRGQQKLLVVALLIAEVKLW 281 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 S G P+LL+D++ A LD + + VT +Q+F+T D + + ++ ++ Sbjct: 282 SRQ-GLTPVLLIDDLPAELDPAHLHTVLDTVTGDPTQVFLTAIDGAALPTDLPPGQWYQV 340 Query: 368 SNHQA 372 + Sbjct: 341 CEGRV 345 >gi|81301059|ref|YP_401267.1| recombination protein F [Synechococcus elongatus PCC 7942] gi|97181064|sp|Q31KY9|RECF_SYNE7 RecName: Full=DNA replication and repair protein recF gi|81169940|gb|ABB58280.1| DNA replication and repair protein RecF [Synechococcus elongatus PCC 7942] Length = 387 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 98/375 (26%), Positives = 164/375 (43%), Gaps = 11/375 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRNY + F A TI +G+N GKTN+LEA+ S R R + D+ Sbjct: 1 MFLHSLHLQHFRNYRDQTVQFQAPKTILLGENAQGKTNLLEAVELFSTLRSHRVSRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ S A VE G + + R +Q + V+R +L L Sbjct: 61 VQTGAESAL-LTAVVERDSGEQQLQ---IQLQQQGRRRVQRDGEVLRRQLDLLGSLCSVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 + G +RR +LDR++ + P + + R++R RN LL D + Sbjct: 117 FSSLDLDLVRGGPQQRRDWLDRLLIQLQPIYAHLQQQYGRVLRQRNALLRRAESLDLALL 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSF 240 + + Q+A+LGV I R I L L + ++ + +L + L Sbjct: 177 APLNWQLAQLGVHIMRRRSRAIQRLVPLAAHWHREISGQREQLIVAYQPSVLAPDDTDEA 236 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A +E ++ R + R +L+GPHR DL + + S G+Q+ +++ + Sbjct: 237 IAWQERMLAQIEARRAAELGQRTSLVGPHRDDLNLSINGTEARLQ-ASQGQQRTLVLSLK 295 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359 LA LI G P+LLLD++ A LD ++ L + + Q +T T S FD S Sbjct: 296 LAELELIEAVLGEPPLLLLDDVLAELDLRRQQQLLEAIAN-RFQTLITTTHLSAFDQSWV 354 Query: 360 ETAKFMRISNHQALC 374 ETA+ + + + Sbjct: 355 ETAQILTVQSGHLQS 369 >gi|226952832|ref|ZP_03823296.1| DNA replication and repair protein RecF [Acinetobacter sp. ATCC 27244] gi|294648700|ref|ZP_06726160.1| DNA replication and repair family protein [Acinetobacter haemolyticus ATCC 19194] gi|226836453|gb|EEH68836.1| DNA replication and repair protein RecF [Acinetobacter sp. ATCC 27244] gi|292825375|gb|EFF84118.1| DNA replication and repair family protein [Acinetobacter haemolyticus ATCC 19194] Length = 364 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 156/376 (41%), Gaps = 25/376 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I LNI RN ++ L IF G NG GKT+ILE+I L+ GR FR Sbjct: 1 MQITRLNIERVRNLKTVALTELQPFNIFYGANGSGKTSILESIHLLATGRSFRTHIPKHY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + V G+ + + ++IN I +L K L + Sbjct: 61 IQYEADDAIVFAQSVHERMGM--------RKLASGEQLIKINGDTIATQGQLAKRLPLQH 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 L P I + RR+ LD ++F ++P + R ++ RN LL + Sbjct: 113 LDPQSTDIIDQGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNSLLKTRRNLTLADL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +++ G ++ RV ++ + E + K+ P I++ L +Q Sbjct: 173 EPWNKMLSDYGEILHSQRVGILEQWNLFFKEDL-KQLLPDIEIELEYHAGFHTEQG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG---STGEQKVVLVGIF 300 + L + D R T GPHR+DL + A+ S G++K++++ + Sbjct: 228 ---LLQDLVQQHQKDLDRRYTEYGPHRADLRLKTKGDAMRSDAAHVLSRGQKKLLIMALK 284 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFD 356 L+ ++ + ++LLD+++A LD + L ++ +GSQ+FMT D Sbjct: 285 LSQIAMLH-ASNKETVVLLDDLTAELDLAAQQRLMERLSQLGSQVFMTTLDHTSVLKHLH 343 Query: 357 SLNETAKFMRISNHQA 372 L+ + + + + Q Sbjct: 344 DLSISFQLFHVVHGQV 359 >gi|225020877|ref|ZP_03710069.1| hypothetical protein CORMATOL_00885 [Corynebacterium matruchotii ATCC 33806] gi|224946359|gb|EEG27568.1| hypothetical protein CORMATOL_00885 [Corynebacterium matruchotii ATCC 33806] Length = 364 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 24/355 (6%) Query: 25 FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF-FSTFARVEGME 83 + T+FVG NG GKTN++EAI +++ R A A + R G P+ S A + E Sbjct: 3 LNPGITLFVGRNGHGKTNLVEAIGYVAHLGSHRVAQDAPLVRHGQPNARVSATAVRDDRE 62 Query: 84 GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRF 143 A + I + IN + EL +R P + G ERRR+ Sbjct: 63 LTAHLLI-----NASGANQASINRTRLNSPRELLGVVRTVLFCPEDLALVRGEPAERRRY 117 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----------DSSWCSSIEAQMAE 192 LD ++ PR D+E+++R R LL + +AQ++ Sbjct: 118 LDNIIATRRPRLAGVKADYEKVLRQRTTLLKTSSAALRRGYSGDDGSLATLDVWDAQLSR 177 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFCALKEEYAKK 250 G ++ AR ++ L L+ E ++ + + ++ + Sbjct: 178 QGAQMIAARRALVAELDPLVHEAYAGIAPESRPAHIAYESTVP-DVGEDPALIEAAMLAE 236 Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 L R + R+L+GPHR DL++ D S GE +++ + L +L+ Sbjct: 237 LGRMRPKEIDRGRSLVGPHRDDLVITLGDVPAK-GFASHGETWSMVLALRLGEFQLL-RA 294 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKF 364 G P+L+LD++ A LD +R L + D+ Q+ +T + L + + Sbjct: 295 DGTDPVLILDDVFAELDALRRERLVHLTQDVE-QVLITVAVPDDLPPDLGDIHRI 348 >gi|269837339|ref|YP_003319567.1| DNA replication and repair protein RecF [Sphaerobacter thermophilus DSM 20745] gi|269786602|gb|ACZ38745.1| DNA replication and repair protein RecF [Sphaerobacter thermophilus DSM 20745] Length = 412 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 158/382 (41%), Gaps = 32/382 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + EFR+Y L + A G N GKT++LEA+ L+ R R +S + Sbjct: 1 MILTTLQLEEFRSYRRLSVDLPAAGLRIFGQNAGGKTSLLEAVYLLATMRSPRASSERET 60 Query: 65 TRIGS------PSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDE 115 S P + AR+ D+ + L ++R + ++++ R +D Sbjct: 61 IHWESGVELGLPPYARVAARIRHNRHETDVEVVLTVDEERGGALRKRVKLDGRPRRAIDA 120 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L++ P + G RRR+LD + ID + + + + RL+ RN LL E Sbjct: 121 -VGALKVVLFTPDDLNLILGSPSVRRRYLDITLSQIDSTYLQALGQYGRLLEQRNSLLKE 179 Query: 176 --------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 + +A++ G + R+ ++ + + E + +L Sbjct: 180 LGGRRPRDERAIEDQMAYWDAEIVTRGAYLLAQRLRYVHEVDRVAAEEFRALARTEDRLG 239 Query: 228 LTGF-------------LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274 L ++ + + L R + TL+GPHR DL Sbjct: 240 LRYSTTVTLPDALRERVVESTLADAQAFVARALESDLHRLRPDELRRGVTLVGPHRDDLH 299 Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 ++ +GS G+Q++ +V LA R + +TG P+LLLD++ + LD + + L Sbjct: 300 FLLGGHELSA-YGSRGQQRLAVVATKLAELRQVVASTGERPVLLLDDVLSELDPEHQERL 358 Query: 335 FRIVTDIGSQIFMTGTDKSVFD 356 ++ G QI +T TD+++ D Sbjct: 359 LAVLGSAGCQILITATDRALLD 380 >gi|298345813|ref|YP_003718500.1| recombination protein F [Mobiluncus curtisii ATCC 43063] gi|298235874|gb|ADI67006.1| recombination protein F [Mobiluncus curtisii ATCC 43063] Length = 413 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 156/396 (39%), Gaps = 38/396 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR+Y + L F A +FVG NG GKTN+LEA+++L+ R + A + Sbjct: 1 MFVSDLALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADIS--------------IKLETRDDRSVRCLQINDVVI 110 + A + A + +++E R+ R + IN + Sbjct: 61 IFREIGDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNV 119 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 R L HL P ++ G RR FLDR+ + P + ++ ++ R R Sbjct: 120 RPRS-LLGHLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRG 178 Query: 171 RLLT-----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PH 223 L D S + + V++ R +I+ L+ + + Sbjct: 179 AYLKDVAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPSVYARIAGHPAP 238 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYA----------KKLFDGRKMDSMSRRTLIGPHRSDL 273 + L+ + + S +E YA + L ++ L+GPHR +L Sbjct: 239 VGLTYADSVTKTLELSADEQREMYANPELLSSVFRQALAQCHADEARRGVNLVGPHRDEL 298 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 + + S GE + + LA L+ P+LLLD++ A LDE +R A Sbjct: 299 ELHLNGLPVK-GFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAA 357 Query: 334 LFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 L + Q+F+T T + ++L A F R++ Sbjct: 358 LLWAIDQAD-QVFITSATGTEIPEAL--HAAFYRVT 390 >gi|56751857|ref|YP_172558.1| recombination protein F [Synechococcus elongatus PCC 6301] gi|81820589|sp|Q5N0Y2|RECF_SYNP6 RecName: Full=DNA replication and repair protein recF gi|56686816|dbj|BAD80038.1| DNA replication and repair protein RecF [Synechococcus elongatus PCC 6301] Length = 387 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 98/375 (26%), Positives = 164/375 (43%), Gaps = 11/375 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ FRNY + F A TI +G+N GKTN+LEA+ S R R + D+ Sbjct: 1 MFLHSLHLQHFRNYRDQTVQFQAPKTILLGENAQGKTNLLEAVELFSTLRSHRVSRDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ S A VE G + + R +Q + V+R +L L Sbjct: 61 VQTGAESAL-LTAVVERDSGEQQLQ---IQLQQQGRRRVQRDGEVLRRQLDLLGSLCSVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 + G +RR +LDR++ + P + + R++R RN LL D + Sbjct: 117 FSSLDLDLVRGGPQQRRVWLDRLLIQLQPIYAHLQQQYGRVLRQRNALLRRAESLDLALL 176 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSF 240 + + Q+A+LGV I R I L L + ++ + +L + L Sbjct: 177 APLNWQLAQLGVHIMRRRSRAIQRLVPLAAHWHREISGQREQLIVAYQPSVLAPDDTDEA 236 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A +E ++ R + R +L+GPHR DL + + S G+Q+ +++ + Sbjct: 237 IAWQERMLAQIEARRAAELGQRTSLVGPHRDDLNLSINGTEARLQ-ASQGQQRTLVLSLK 295 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359 LA LI G P+LLLD++ A LD ++ L + + Q +T T S FD S Sbjct: 296 LAELELIEAVLGEPPLLLLDDVLAELDLRRQQQLLEAIAN-RFQTLITTTHLSAFDQSWV 354 Query: 360 ETAKFMRISNHQALC 374 ETA+ + + + Sbjct: 355 ETAQILTVQSGHLQS 369 >gi|299768253|ref|YP_003730279.1| recombination protein F [Acinetobacter sp. DR1] gi|298698341|gb|ADI88906.1| recombination protein F [Acinetobacter sp. DR1] Length = 360 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 155/373 (41%), Gaps = 23/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI RN ++ L IF G NG GKT+ILEAI L+ GR FR + Sbjct: 1 MHLTRLNIERVRNLKTVALQGLQPFNIFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + I ++ + + +++N + +L K L + Sbjct: 61 IQYAAEDAIVFA-----QSSTEKIGMQ---KLASGEQLMKVNGDTVATQGQLAKLLPLQH 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 L P I + RR+ LD ++F ++P + R ++ RN LL + Sbjct: 113 LDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +++ G ++ R+ ++ + + + P +++ L +Q Sbjct: 173 EPWNKMLSDYGEILHSQRLGIVEQWNVFFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + + D R T GPHR+DL + + S G++K++++ + L+ Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADVVL-SRGQKKLLIIALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359 ++ + ++LLD+++A LD + L ++ +GSQ+FMT D K L+ Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342 Query: 360 ETAKFMRISNHQA 372 + + + + Q Sbjct: 343 ISYQLFNVESGQV 355 >gi|119025021|ref|YP_908866.1| recombination protein RecF [Bifidobacterium adolescentis ATCC 15703] gi|254790464|sp|A0ZZA1|RECF_BIFAA RecName: Full=DNA replication and repair protein recF gi|118764605|dbj|BAF38784.1| recombination protein RecF [Bifidobacterium adolescentis ATCC 15703] Length = 403 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 134/356 (37%), Gaps = 18/356 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R++ L F+ I G NG+GKTNI+EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWDHCVLDFEPGINILQGSNGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G PS + A VE I + R R ++ + + ++ + Sbjct: 61 VEKGHPSA-TVRANVEDAGEQRTYEITIAARGANRAR---VDGGKSQYMRDIVGWVPSVS 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P R+ SG RR FL++ + PR+ + + F + + R LL + D Sbjct: 117 FTPEDQRLVSGDPATRRNFLNQAASLLLPRYAQSLQQFTHVAKQRAALLKQLSDGSGIDP 176 Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + Q LGV++ R ++I L + L Sbjct: 177 EYGRQAVLSGLEVWTGQFIALGVQLTKDRNDVIGLLREPFTRIYASLAGEEEQADLVYEP 236 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 F E ++ + + LIGP R DL + D S GE Sbjct: 237 SFDEVLLFDEPAAEISRHFQRIYPGEVARGQNLIGPQRDDLTLRLNDMP-AREFASNGEM 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + + + +A ++S PI++LD++ A LDE +R + Q+ +T Sbjct: 296 WTMALALKMALYEVVSAQRDVKPIVILDDVFAQLDESRRGQILDFARR-QDQVLIT 350 >gi|170078873|ref|YP_001735511.1| recombination protein F [Synechococcus sp. PCC 7002] gi|226737845|sp|B1XJ90|RECF_SYNP2 RecName: Full=DNA replication and repair protein recF gi|169886542|gb|ACB00256.1| DNA repair and genetic recombination protein [Synechococcus sp. PCC 7002] Length = 388 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 80/379 (21%), Positives = 170/379 (44%), Gaps = 19/379 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY + F AQ TI +G+N GK+N+LEA+ L+ + R + AD+ Sbjct: 1 MYLQTLHLRNFRNYQHQHVDFSAQKTILIGNNAQGKSNLLEAVELLASLKTHRTSRDADL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + A+++ G D + L + R L++N ++R + L Sbjct: 61 VKQGEATA-RIQAQIQRGYGTVDFDLLLRNQGG---RTLKLNGEILRRQLDGLGTLNAVE 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 + G RR+++D ++ ++P + R + +++++++ RN LL Sbjct: 117 FSCLDLDLVRGGPDCRRQWIDNLLIQLEPVYARILQEYQQVLKQRNALLRTAKKLHRNQA 176 Query: 180 ------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + + + Q+A G ++ R + L L + + + L +T + Sbjct: 177 AIPTDLTQQLTLWDLQLAATGSRVTRRRSRGLLRLMPLAQAWHRDISSQTETLEITYCPN 236 Query: 234 GKFDQS-FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + Q +++ K+ R+ + +++GPHR ++ +GS G+Q Sbjct: 237 IPWQQDDPHHVQQACLDKIEQRRQAEQHQGSSMVGPHRDEIEFSINGTPARF-YGSQGQQ 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + +++ + LA +LI G P+LLLD++ A LD ++N L + Q +T T Sbjct: 296 RTLVLALKLAELQLIETIIGEPPLLLLDDVLAELDPSRQNQLLDTI-QTRFQTLITTTHL 354 Query: 353 SVF-DSLNETAKFMRISNH 370 + F + ++ + ++ Sbjct: 355 NSFGADWLKHSQILTVNQG 373 >gi|119509397|ref|ZP_01628546.1| DNA repair and genetic recombination protein [Nodularia spumigena CCY9414] gi|119466011|gb|EAW46899.1| DNA repair and genetic recombination protein [Nodularia spumigena CCY9414] Length = 376 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 166/382 (43%), Gaps = 18/382 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L++ +FRNY ++ F A TI VG+N GK+N+LEA+ L+ R R AD Sbjct: 1 MYLKNLHLRQFRNYQDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMGRVADF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G A +E G +D+++ L RSV IN +R + L Sbjct: 61 IQEGQD-IAQINAILERENGTSDLALTLRRNGRRSV---AINGESVRRQMDFLGVLNAVQ 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 + G RR +LD ++ ++P + + + +++R RN L + Sbjct: 117 FSSLDLDLVRGGPDVRRNWLDTLLIQLEPIYAHLLQQYNQVLRQRNAFLKKALDSADGIN 176 Query: 177 --YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 S + +AQ+ G K+ R I L+ + + + L + Sbjct: 177 RVSTQDSTLAIWDAQLVTTGTKVIRRRDRAIQRLAPIAAAWHSSISGSTEVLQINYLPSV 236 Query: 235 KFDQ-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 Q +++ + K+ + TL+GPHR ++ + ++ +GS G+Q+ Sbjct: 237 PLAQIPPEEIQQAFLGKIQQRSAAELYRGTTLVGPHRDEVEL-IINQTPARQYGSQGQQR 295 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 +++ + LA LI P+LLLD++ A LD ++N L + D Q +T T S Sbjct: 296 TLVLALKLAELELIEQVVQEPPLLLLDDVLAELDPFRQNQLLDAIQD-RFQTLITTTHLS 354 Query: 354 VFDS-LNETAKFMRISNHQALC 374 FD+ +++ + + + + + Sbjct: 355 SFDAQWLNSSQILYVKSGEIVS 376 >gi|320095110|ref|ZP_08026819.1| recombination protein F [Actinomyces sp. oral taxon 178 str. F0338] gi|319977977|gb|EFW09611.1| recombination protein F [Actinomyces sp. oral taxon 178 str. F0338] Length = 395 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 86/395 (21%), Positives = 153/395 (38%), Gaps = 32/395 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FR++ + F T+ VG NG GKTN++EAI++LS R + + + Sbjct: 1 MRVSHLALDDFRSWKRGLVEFPPGATVLVGANGQGKTNLVEAIAYLSTFSSHRVGAESAL 60 Query: 65 TRIGSP------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 RI + R+ EG + ++LE ++ R +IN +R L Sbjct: 61 VRIPADPASTAPGGAVIRVRLVQAEGREQV-VELEIVRGKANRA-RINRTQVRPRAIL-G 117 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY- 177 +R P + G RR F+D +V P DFER+ R R L+ Sbjct: 118 LVRTVVFAPEDLALVRGEPAARRAFMDDLVIQRSPVMAGVKADFERVARQRAALMKSAQA 177 Query: 178 -------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSL 228 D S + Q A L +++ AR + + +L+ + + + LS Sbjct: 178 SARRGASPDLSTLDVWDQQFAHLSARLSAARAQAVTSLAGPASRAYDEVSDSPRRLVLSF 237 Query: 229 TGFLDGKFDQSFC-----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 +D A + L R + L+G HR +L + Sbjct: 238 EASVDRAIGTDPDDPASADPCDAPAQERRTLAALAAHRDKEVTRGVNLVGAHRDELSLVL 297 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + + S GE V + + L L+S G P+L+LD++ A LD +R L + Sbjct: 298 GGMPVK-GYASHGESWSVALALRLGAFELLSE-DGDTPVLILDDVFAELDTARREGLAAM 355 Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 + I ++ + L+ +R+ + Sbjct: 356 ASRAEQAIITCAVEEDIPAGLDHRTIRIRMDAAEG 390 >gi|126668220|ref|ZP_01739181.1| recombination protein F [Marinobacter sp. ELB17] gi|126627369|gb|EAZ98005.1| recombination protein F [Marinobacter sp. ELB17] Length = 411 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 86/416 (20%), Positives = 156/416 (37%), Gaps = 57/416 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63 + + L FRN A+ + F + G NG GKT++LEAI +L GR FR + + Sbjct: 1 MALITLQTEHFRNLAAKPVTFSPAFNLIDGANGSGKTSLLEAIGYLGLGRSFRVSRHQAV 60 Query: 64 ------------------VTRIGSPSFF-----------------------STFARVEGM 82 + GS S A E Sbjct: 61 VQHQQQRFTVFGGLDAGTLNCRGSNSGAFNSGVPNPDTGNSDARNSCIPNSELKAAPEAG 120 Query: 83 EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142 + + L+++ +R + L +HL + + P + I +G +RR+ Sbjct: 121 ASSYAHRLGISRDVGLKETVLRVDGEAVRNLSALARHLPVLVIDPGVFDIVAGGPGKRRQ 180 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 FLD VF ++P +R++ RN+ L G D S + +AQ L ++ AR+ Sbjct: 181 FLDWSVFHVEPSFGGAWQQCQRVISQRNQTLRNGRIDESLMRAWDAQYDLLSNRVTDARL 240 Query: 203 EMINALSSLIMEYVQKENFPHI-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + + + +L L + Q ++ L R + Sbjct: 241 AAFALFKEAFWLLLGETDAAWANQLKLEFYPGWDHAQ-------RLSEVLVSHRDQERRM 293 Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321 TL GP+R+D+ + + + S G+QK +++ + +A ++ G LLD+ Sbjct: 294 GHTLYGPNRADIRLKIQGRPVAEIL-SRGQQKTLVILMKIAQG-MVLRPLGKQVTFLLDD 351 Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-----NETAKFMRISNHQA 372 I+A LD R L + + Q+F+T ++ D+L + + + Q Sbjct: 352 INAELDSRHRQMLAEKLRLLQCQVFITSIEQQTPDTLWPGTTTPDFRMFHVEHGQV 407 >gi|304390483|ref|ZP_07372436.1| recombination protein F [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326239|gb|EFL93484.1| recombination protein F [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 413 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 156/396 (39%), Gaps = 38/396 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR+Y + L F A +FVG NG GKTN+LEA+++L+ R + A + Sbjct: 1 MFVSDLALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADIS--------------IKLETRDDRSVRCLQINDVVI 110 + A + A + +++E R+ R + IN + Sbjct: 61 IFREIGDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNV 119 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 R L HL P ++ G RR FLDR+ + P + ++ ++ R R Sbjct: 120 RPRS-LLGHLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRG 178 Query: 171 RLLT-----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PH 223 L D S + + V++ R +I+ L+ + + Sbjct: 179 AYLKDVAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPSVYARIAGHPAP 238 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYA----------KKLFDGRKMDSMSRRTLIGPHRSDL 273 + L+ + + S +E YA + L ++ L+GPHR +L Sbjct: 239 VGLTYADSVTKTLELSADEQREMYANPELLSSVFRQALAQRHADEARRGVNLVGPHRDEL 298 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 + + S GE + + LA L+ P+LLLD++ A LDE +R A Sbjct: 299 ELHLNGLPVK-GFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAA 357 Query: 334 LFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 L + Q+F+T T + ++L A F R++ Sbjct: 358 LLWAIDQAD-QVFITSATGTEIPEAL--HAAFYRVT 390 >gi|257789782|ref|YP_003180388.1| DNA replication and repair protein RecF [Eggerthella lenta DSM 2243] gi|317489245|ref|ZP_07947762.1| DNA replication and repair protein RecF [Eggerthella sp. 1_3_56FAA] gi|325832293|ref|ZP_08165292.1| DNA replication and repair protein RecF [Eggerthella sp. HGA1] gi|257473679|gb|ACV53999.1| DNA replication and repair protein RecF [Eggerthella lenta DSM 2243] gi|316911646|gb|EFV33238.1| DNA replication and repair protein RecF [Eggerthella sp. 1_3_56FAA] gi|325486129|gb|EGC88583.1| DNA replication and repair protein RecF [Eggerthella sp. HGA1] Length = 420 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 154/375 (41%), Gaps = 19/375 (5%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I ++ FR+Y + L T+ VG N GKTN++E I L+ FR A Sbjct: 2 DLAIAHISFLNFRSYEAFDLDGIGPLTVLVGPNAAGKTNVVEGIGLLTAQSSFRHAPVDQ 61 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R G+P FAR+ ++L + + +N R D L + Sbjct: 62 LVRAGAP-----FARLTADVTDGSRQLELAVQMAEGKKKHLLNGKPKRTAD-LKGLVPSV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + G RR LD + + H D+E+++R +NRLL + ++ Sbjct: 116 TFTPDDLELAKGAMSVRRAALDALGSQLSANHYLIRRDYEKVLRHKNRLLKDEAP-AALV 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-- 241 ++ + G +++ R + L++ + Y + H +L + Sbjct: 175 GAMNETLVTCGAQLSCYRAALFEKLAASMASYYAEITDGHERLDAGFVPSWEEHDPLSFA 234 Query: 242 -------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 +E A L + + +R L+GPH + K + GS G+Q+ Sbjct: 235 TRTFGRDEAREALADALARRGGEERVRKRALVGPHADRIEFFIDGKNAAL-FGSQGQQRS 293 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 V++ LA A LI + P+LLLD++ + LD +R AL ++ Q F+T T+ + Sbjct: 294 VVLAFKLAEATLIQDILRQKPVLLLDDVMSELDAARRRALVAFISG-DIQTFITTTNLAY 352 Query: 355 F-DSLNETAKFMRIS 368 F D L A+ + + Sbjct: 353 FDDDLLGGARIVELE 367 >gi|58038494|ref|YP_190458.1| recombination protein F [Gluconobacter oxydans 621H] gi|58000908|gb|AAW59802.1| DNA replication and repair protein RecF [Gluconobacter oxydans 621H] Length = 367 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 187/369 (50%), Gaps = 6/369 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ L +++FRNY +A + G+NG GKTN+LEA+S L+PGRG R A+ + Sbjct: 1 MKLTRLALTDFRNYTHTVWTPEASILVLTGENGSGKTNLLEAVSLLAPGRGLRGAALPAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + A ++ I + ++ R +++ IR + + W Sbjct: 61 CRQGAER-WGVAATLQSGLDEFRIGTGSDLS-EKQRRTFRLDGENIRSQALIGQRFSCVW 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P MDR+F S RRRFLDR+V A+ P H R++ +R + RNR+L+E ++ W + Sbjct: 119 LTPQMDRLFQEGSSGRRRFLDRLVMALSPDHGRQIAAHDRSVVTRNRVLSERPNEAEWLT 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSFCAL 243 SIE +A V + AR+ +I ++++ E + F L L + + Q + Sbjct: 179 SIEDSIARHAVAASAARLALIESMNAHPFE---NDGFSASTLHLDCAISSRLTTQPALEV 235 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ L R D T +G HR+D ++ S+G+QKV+L G L+H Sbjct: 236 EDWIRNSLRQARTEDRQRSTTSVGAHRADFMLSDTATGRPAELSSSGQQKVMLTGTILSH 295 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 ARL++ G+AP +LLDE HLDE +R+AL + + + + +TGTD F + A+ Sbjct: 296 ARLMTQERGYAPAILLDEPLLHLDEMRRHALLDSLEGLRAPVLITGTDAEAFAPIAGRAQ 355 Query: 364 FMRISNHQA 372 F I N Sbjct: 356 FFSIRNGTI 364 >gi|315657691|ref|ZP_07910573.1| recombination protein F [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492163|gb|EFU81772.1| recombination protein F [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 413 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 158/396 (39%), Gaps = 38/396 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR+Y + L F A +FVG NG GKTN+LEA+++L+ R + A + Sbjct: 1 MFVSDLALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADIS--------------IKLETRDDRSVRCLQINDVVI 110 + A + A + +++E R+ R + IN + Sbjct: 61 IFREIGDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNV 119 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 R L HL P ++ G + RR FLDR+ + P + ++ ++ R R Sbjct: 120 RPRS-LLGHLSTVLFAPEDLQLVQGDPVTRRTFLDRIAIQLRPTLVGALGEYTKIARQRG 178 Query: 171 RLLT-----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PH 223 L D S + + + V++ R +I+ L+ + + Sbjct: 179 AYLKDVAKRRAPIDEIQLSIWDDALVPVAVEVMRERARVIDQLAQFLPSVYARIAGHPAP 238 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYA----------KKLFDGRKMDSMSRRTLIGPHRSDL 273 + L+ + + S +E YA + L ++ L+GPHR +L Sbjct: 239 VGLTYADSVTKTLELSADEQREMYANPELLSSVFRQALAQRHADEARRGVNLVGPHRDEL 298 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 + + S GE + + LA L+ P+LLLD++ A LDE +R A Sbjct: 299 ELHLNGLPVK-GFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAA 357 Query: 334 LFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 L + Q+F+T T + ++L A F R++ Sbjct: 358 LLWAIDQAD-QVFITSATGTEIPEAL--HAAFYRVT 390 >gi|296453190|ref|YP_003660333.1| DNA replication and repair protein RecF [Bifidobacterium longum subsp. longum JDM301] gi|296182621|gb|ADG99502.1| DNA replication and repair protein RecF [Bifidobacterium longum subsp. longum JDM301] Length = 412 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 141/375 (37%), Gaps = 18/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + + R R IN + ++ + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P R+ SG RR +++ ++P + + + F R+ + R LL + ++ Sbjct: 118 FTPEDQRLVSGDPGARRVMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQ 177 Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 S Q E GV + R +I L+ +++LT Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSF 237 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 F + ++ + LIGP R D+ ++ S GE Sbjct: 238 DEVLMFDDPHPQISEHFQRIYPGEMARGVNLIGPQRDDMNLELAGIP-AREFASNGEMWT 296 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + + +A ++ + G PI++LD++ A LD+ +R + Q+ +T + Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGD 355 Query: 354 VFDSLNETAKFMRIS 368 V D E+A + ++ Sbjct: 356 VPDY--ESAHRIDVA 368 >gi|212715153|ref|ZP_03323281.1| hypothetical protein BIFCAT_00039 [Bifidobacterium catenulatum DSM 16992] gi|212661834|gb|EEB22409.1| hypothetical protein BIFCAT_00039 [Bifidobacterium catenulatum DSM 16992] Length = 400 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 78/377 (20%), Positives = 140/377 (37%), Gaps = 19/377 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R++ L F+ I G NG+GKTNI+EA+ LS G R +S + Sbjct: 1 MYISRLALDHYRSWEHCVLDFEPGINILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S + A VE E + R R I+ + + +L Sbjct: 61 IEKGCTSA-TIRANVEDDETQHTYEATIVARGANRAR---IDGGKSQYMRDLIGRTPSVS 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG----YFDS 180 P R+ +G RR F+++ + P + + + F + + R LL + D Sbjct: 117 FTPEDQRLVAGDPATRRNFINQAASLLLPHYAQLLQQFTHVAKQRTALLKQLGDGTNLDP 176 Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + Q +LG+++ R ++I L + +L+ Sbjct: 177 QYSQQTVLSGLEIWTGQFIDLGMRLTRERNDVIARLGEPFARIYASLAGDDERAALSYEP 236 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 F E ++ + + LIGPHR DL + D S GE Sbjct: 237 SFDEVMLFDDPSAEISRHFQRIYPGEVARGQNLIGPHRDDLTLLLNDMP-AREFASNGEM 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTD 351 + + + +A +S PI++LD++ A LDE +R + Q+ +T Sbjct: 296 WTMALALKMALYEAVSAQFESKPIVILDDVFAQLDESRRGQILDFAMR-QDQVLITVAAA 354 Query: 352 KSVFDSLNETAKFMRIS 368 + + A + ++ Sbjct: 355 SDIPQTDAVHAHVIDVA 371 >gi|221195223|ref|ZP_03568279.1| DNA replication and repair protein RecF [Atopobium rimae ATCC 49626] gi|221185126|gb|EEE17517.1| DNA replication and repair protein RecF [Atopobium rimae ATCC 49626] Length = 361 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 87/365 (23%), Positives = 159/365 (43%), Gaps = 11/365 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + +++ FRN+ L + F TI VG N VGKTN +EA+ L+ G FR+ + + Sbjct: 5 VNNISLVNFRNFRMLSVDFSQSITILVGHNAVGKTNTIEALQMLTAGYSFRKPTPVQLML 64 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G A + G + D+S + + R + N D + L Sbjct: 65 EGEKQ-SKIHAHLTGDGRVIDLSCTISSLR----RQYEKNGKKCHATD-IPGDLMSVLFT 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + RR +D + + + + + R + RNRLL E D S S+ Sbjct: 119 PDDLACIKRSASYRRGEIDDFGKQANKTYAKVLAAYLRSIEQRNRLLKENVVDFSLLSAW 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSLTGFL-DGKFDQSFCALK 244 + +A G + AR+++ LS+ E ++ + + L + + DQ+ L Sbjct: 179 DTSVALGGATLLCARLKLFRRLSAKTSEIYKQISGGEDLVLRYESSIGEISADQTKEELL 238 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +++ L D +D ++T +GPHR D++ K + +GS G+Q+ V++ + +A Sbjct: 239 DKFLSSLKDAHGVDERRQQTTVGPHRDDIVFLINGKDARM-YGSQGQQRSVILALKMAEV 297 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAK 363 + G P+LLLD++ + LD+ +R A+ Q +T T+ F + + AK Sbjct: 298 LVSEEILGTKPLLLLDDVMSELDKSRREAIMNFTFG-DIQTVITTTNLGYFSPDMVDVAK 356 Query: 364 FMRIS 368 + Sbjct: 357 VVSFE 361 >gi|239622840|ref|ZP_04665871.1| recombination protein RecF [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514837|gb|EEQ54704.1| recombination protein RecF [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 412 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 141/375 (37%), Gaps = 18/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + + R R IN + ++ + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P R+ SG RR +++ ++P + + + F R+ + R LL + ++ Sbjct: 118 FTPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQ 177 Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 S Q E GV + R +I L+ +++LT Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSF 237 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 F + ++ + LIGP R D+ ++ S GE Sbjct: 238 DEVLMFDDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLELGGIP-AREFASNGEMWT 296 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + + +A ++ + G PI++LD++ A LD+ +R + Q+ +T + Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGD 355 Query: 354 VFDSLNETAKFMRIS 368 V D E+A + ++ Sbjct: 356 VPDY--ESAHRIDVA 368 >gi|118465169|ref|YP_879306.1| recombination protein F [Mycobacterium avium 104] gi|166220715|sp|A0Q8R8|RECF_MYCA1 RecName: Full=DNA replication and repair protein recF gi|118166456|gb|ABK67353.1| DNA replication and repair protein RecF [Mycobacterium avium 104] Length = 385 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 153/376 (40%), Gaps = 22/376 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + Sbjct: 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + ++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGADRTVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G ERRR+LD + P D+++++R R LL D Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGD 176 Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234 ++++AE G ++ AR++++N L+ + + Q + L Sbjct: 177 RGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGA 236 Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 A +Y L R + L+GPHR DL + ++ + S Sbjct: 237 AAAAEVNAGDRDYLEAALLAGLAARRYAELERGVCLVGPHRDDLELWLGEQ-VAKGFASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + + + LA L+ P+LLLD++ A LD +R A V + Q+ +T Sbjct: 296 GESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELDAARRRA-LAAVAESAEQVLVTA 353 Query: 350 TDKSVFDSLNETAKFM 365 + + + Sbjct: 354 AVLEDIPAGWQARRLF 369 >gi|262371171|ref|ZP_06064492.1| recombinational DNA repair ATPase [Acinetobacter johnsonii SH046] gi|262313901|gb|EEY94947.1| recombinational DNA repair ATPase [Acinetobacter johnsonii SH046] Length = 360 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 78/376 (20%), Positives = 152/376 (40%), Gaps = 23/376 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I LNI RN ++ L +F G NG GKT+ILEAI L+ GR FR Sbjct: 1 MQITRLNIERVRNLRTVALHGLQPFNVFYGQNGSGKTSILEAIHLLATGRSFRTHIPKHY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + I ++ ++ +++N I +L K L + Sbjct: 61 IQTDTQDAIVFA-----QSSSEKIGMQKLLSGEQ---LIKVNGDNIATQGQLAKILPLQL 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P I + RR+ LD ++F ++P + R ++ RN LL + Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYHAWQYYSRALKQRNSLLKTRRNLSLADL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + G ++ RV ++ + ++ P I++ L + Sbjct: 173 EPWNKMLGDYGEMLHSQRVSIVEQWKGFFEQDLKHL-LPDIEVQLEYSPGFHTEVG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 L + D R T GPH++DL + + S G++K++++ + L+ Sbjct: 228 ---LLHDLQSHHQKDLERRYTEYGPHKADLRLKTSLGDADVVL-SRGQKKLLIIALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359 ++ ++LLD+++A LD + L ++ +GSQ+F+T + K+ L+ Sbjct: 284 IAMLH-ACNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFITTLEYESVKNHLHDLS 342 Query: 360 ETAKFMRISNHQALCI 375 + + + N Q + Sbjct: 343 ISYQLFCVENGQVQVV 358 >gi|302336538|ref|YP_003801745.1| DNA replication and repair protein RecF [Olsenella uli DSM 7084] gi|301320378|gb|ADK68865.1| DNA replication and repair protein RecF [Olsenella uli DSM 7084] Length = 362 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 87/352 (24%), Positives = 155/352 (44%), Gaps = 10/352 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + +RN+ + T+ G N GKTN +EA+ L+ G FR + A + R Sbjct: 5 VRSLGLRNWRNFDERNIALADGMTVLHGRNAAGKTNAIEALQMLTAGFSFRHSKPAQLVR 64 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S AR+EG + D+S ++ D + R N + D L L Sbjct: 65 EDQ-SCALIAARLEGDGRVVDVSCEI----DPTRRRFMRNGKRCQAQD-LPSTLMSVLFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + RR LD + + + + + R + RNRLL + D + + Sbjct: 119 PDDLSFVKRGAAYRRDELDAFGRQANRSYSKILSAYVRSVEQRNRLLRQECPDLALLEAW 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQ-SFCALK 244 +A +A G + ++R+ + L + ++ + + L + S + Sbjct: 179 DASVALGGSTLLVSRIHLFERLVEYMCPIYREISEGEELGCRYISSLGLPLEDLSRDEIC 238 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +AK+L + R + ++TL+GP R DL D + GS G+Q+ +++ +A Sbjct: 239 AAFAKRLCELRPQELRRQQTLVGPQRDDLSFTI-DGRDARSFGSQGQQRSIVLAWKMAEV 297 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +L + TG P+LLLD++ + LDE +RNA+ R V G Q ++ T+ F Sbjct: 298 KLSRDVTGEQPLLLLDDVMSELDETRRNAMTRFVQG-GIQAVVSTTNLGYFP 348 >gi|256826463|ref|YP_003150422.1| recF protein [Cryptobacterium curtum DSM 15641] gi|256582606|gb|ACU93740.1| recF protein [Cryptobacterium curtum DSM 15641] Length = 378 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 88/368 (23%), Positives = 154/368 (41%), Gaps = 16/368 (4%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +++ L + FRN+ L TI G N GKT+++EAI +S + FR + Sbjct: 10 NLRLTNLVLRNFRNHQEFSLKGLQGITILAGPNATGKTSVVEAIQLISALKSFRASQIGR 69 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R G + S A +E D+ +++E R ++N R +L Sbjct: 70 AIRWGQTAA-SVIATIESDHRQLDLQLRIE----EGKRSYRLNG-KARRARDLRGLFPAV 123 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 VP + G S RR LD + I D+ +L+R +N+ L + D+ Sbjct: 124 TFVPDDLGLAKGPSSARRGALDDLGAQISKNFAMVQSDYTKLVRQKNQALRDEASDTV-I 182 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFC 241 SI+ + +GV+I R MI L Y ++ + + + + Sbjct: 183 DSIDEVLTLVGVQILSHRSVMIKRLLPYFQLYYERIAQANETADIQYIPCWNEENQTQWT 242 Query: 242 ALKEE----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +EE + L R + + R++++GPH ++ S G+Q+ +++ Sbjct: 243 FEREECLAIFTSTLQQARLQERLRRKSVVGPHADKVVFLINGHD-AAHFASQGQQRSLVL 301 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356 LA A +I T PILLLD++ + LD +R+ ++ + QIF+T T+ F D Sbjct: 302 AYKLAEAAVIEETLNQRPILLLDDVMSELDHQRRDQFMSMIEE-DIQIFITTTNLEYFTD 360 Query: 357 SLNETAKF 364 + E A Sbjct: 361 EIKEKALI 368 >gi|262281564|ref|ZP_06059343.1| DNA replication and repair protein recF [Acinetobacter calcoaceticus RUH2202] gi|262257023|gb|EEY75762.1| DNA replication and repair protein recF [Acinetobacter calcoaceticus RUH2202] Length = 360 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 156/373 (41%), Gaps = 23/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + LNI RN ++ L IF G NG GKT+ILEAI L+ GR FR + Sbjct: 1 MHLTRLNIERVRNLKTVALQGLQPFNIFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + I ++ + + +++N + +L K L + Sbjct: 61 IQYAAEDAIVFA-----QSSTEKIGMQ---KLASGEQLMKVNGDTVATQGQLAKLLPLQH 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 L P I + RR+ LD ++F ++P + R ++ RN LL + Sbjct: 113 LDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +++ G ++ R+ ++ + + ++ P +++ L +Q Sbjct: 173 EPWNKMLSDYGEILHSQRLGIVEQWNVFFQNDL-RQLLPDLEIELEYSPGFHTEQG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + + D R T GPHR+DL + + S G++K++++ + L+ Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPYGHADVVL-SRGQKKLLIIALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359 ++ + ++LLD+++A LD + L ++ +GSQ+FMT D K L+ Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342 Query: 360 ETAKFMRISNHQA 372 + + + + Q Sbjct: 343 ISYQLFNVESGQV 355 >gi|295394844|ref|ZP_06805057.1| recombination protein F [Brevibacterium mcbrellneri ATCC 49030] gi|294972177|gb|EFG48039.1| recombination protein F [Brevibacterium mcbrellneri ATCC 49030] Length = 372 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 81/372 (21%), Positives = 152/372 (40%), Gaps = 22/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR+Y S + + + FV NG GKTN++EA++++S + R + + Sbjct: 1 MWVSQLRLRNFRSYESFDVALEKGVSTFVAPNGWGKTNLVEALAYVSHLKSHRVSQDLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + + + + + + S R I +R EL L Sbjct: 61 VRSGCDEA-TVAVLAHRGDRQLALEVTVRAKGANSAR---IQRQSVR-PRELVGLLPCVV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 P + G +RR FLD ++ PR D +R ++ RN LL E + Sbjct: 116 FAPEDLGLVKGEPAQRRDFLDDLLVTQSPRFVAVRADSDRALKQRNALLKELKNNRDPGL 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIM------EYVQKENFPHIKLSLTGFLD 233 + + + AE ++ + R++++ L+ + E+ + + T +D Sbjct: 176 EATLAIWDEAFAEAASQLVVGRMDLVKRLTQPLQNDFATLAQDANEDRKSVTATYTSRID 235 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 ++ K + L R + TL+GP R DL ++ + S GE Sbjct: 236 YSDIRNTTDAKNAIIQALESRRVPEIDRGLTLVGPQRDDLELEI-GGVSAKHYASHGESW 294 Query: 294 VVLVGIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349 V + + LA ++ + +L+LD++ A LDE +RN L ++ Q+ +T Sbjct: 295 SVALALKLAGWHVLQEDNSGPDDSAVLVLDDVFAELDEGRRNRLAGMLEPAQ-QVLITAA 353 Query: 350 TDKSVFDSLNET 361 V +SL+ T Sbjct: 354 VPGDVPESLHST 365 >gi|154486349|ref|ZP_02027756.1| hypothetical protein BIFADO_00158 [Bifidobacterium adolescentis L2-32] gi|154084212|gb|EDN83257.1| hypothetical protein BIFADO_00158 [Bifidobacterium adolescentis L2-32] Length = 403 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 134/356 (37%), Gaps = 18/356 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R++ L F+ I G NG+GKTNI+EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWDHCVLDFEPGINILQGSNGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G PS + A +E I + R R ++ + + ++ + Sbjct: 61 VEKGHPSA-TVRANIEDAGEQRTYEITIAARGANRAR---VDGGKSQYMRDIVGLVPSVS 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P R+ SG RR FL++ + PR+ + + F + + R LL + D Sbjct: 117 FTPEDQRLVSGDPATRRNFLNQAASLLLPRYAQSLQQFTHVAKQRAALLKQLSDGSGIDP 176 Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + Q LGV++ R ++I L + L Sbjct: 177 EYGRQAVLSGLEVWTGQFIALGVQLTKDRNDVIGLLREPFTRIYASLAGEEEQADLVYEP 236 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 F E ++ + + LIGP R DL + D S GE Sbjct: 237 SFDEVLLFDEPAAEISRHFQRIYPGEVARGQNLIGPQRDDLTLRLNDMP-AREFASNGEM 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + + + +A ++S PI++LD++ A LDE +R + Q+ +T Sbjct: 296 WTMALALKMALYEVVSAQRDVKPIVILDDVFAQLDESRRGQILDFARR-QDQVLIT 350 >gi|21675093|ref|NP_663158.1| recombination/replication protein RecF [Chlorobium tepidum TLS] gi|81790424|sp|Q8KA81|RECF_CHLTE RecName: Full=DNA replication and repair protein recF gi|21648334|gb|AAM73500.1| recombination/replication protein RecF [Chlorobium tepidum TLS] Length = 368 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 81/372 (21%), Positives = 163/372 (43%), Gaps = 18/372 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ ++I+ FRN+ L T G NG GKT+ILEAI + + RGF + + Sbjct: 1 MRLDSISIANFRNHTLLEFEPGHSITNIYGRNGSGKTSILEAIHYCALTRGFSGNNDREY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G F + G +SI + + + +N+ ++ + Sbjct: 61 LKFGEELFTIRSSFTSGQGIATKVSITYSP---KREKRILVNEQELQTFSSHIGTIPCVT 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---S 181 P I +G ERRRF+D + D ++ ++ + R+++ RN LL+ S Sbjct: 118 FTPREMVIINGAPAERRRFIDTAICQYDRKYLSDLLLYRRILQQRNALLSSEQDPRVIDS 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLT-GFLDGKFD 237 + Q+ + +I + R I +S++ +++ + P I + G + ++ Sbjct: 178 ALDVLTDQLVAIATEIVLVRKRFIEHFTSMLGGVYQWIPEGAEPSILYQSSLGHHENLYE 237 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + +++ + ++ ++ + R+TL GPHR DL Y +K + S G+Q+ LV Sbjct: 238 KD--KIQQVFRERFETLKQQELQRRQTLAGPHRDDLQF-YLNKREIRKYASQGQQRAFLV 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + + + +G PI LLD++ + LDE + + G Q+ +T T+K Sbjct: 295 AMKMTLQGYLYEASGEIPITLLDDLFSELDEVVSGTMVETLATKG-QVIITSTEKKKGKG 353 Query: 358 LNETAKFMRISN 369 ++ F + + Sbjct: 354 IS----FFSVDD 361 >gi|23335941|ref|ZP_00121172.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Bifidobacterium longum DJO10A] gi|227547509|ref|ZP_03977558.1| recombination protein RecF [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133630|ref|YP_004000969.1| recf [Bifidobacterium longum subsp. longum BBMN68] gi|322688194|ref|YP_004207928.1| recombination protein RecF [Bifidobacterium longum subsp. infantis 157F] gi|227212024|gb|EEI79920.1| recombination protein RecF [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311772888|gb|ADQ02376.1| RecF [Bifidobacterium longum subsp. longum BBMN68] gi|320459530|dbj|BAJ70150.1| recombination protein RecF [Bifidobacterium longum subsp. infantis 157F] Length = 412 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 140/375 (37%), Gaps = 18/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + + R R IN + ++ + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 P R+ SG RR +++ ++P + + + F R+ + R LL + + Sbjct: 118 FTPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNNGQ 177 Query: 180 -----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 S Q E GV + R +I L+ +++LT Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSF 237 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 F + ++ + LIGP R D+ ++ S GE Sbjct: 238 DEVLMFDDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLELGGIP-AREFASNGEMWT 296 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + + +A ++ + G PI++LD++ A LD+ +R + Q+ +T + Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGD 355 Query: 354 VFDSLNETAKFMRIS 368 V D E+A + ++ Sbjct: 356 VPDY--ESAHRIDVA 368 >gi|145630087|ref|ZP_01785869.1| recombination protein F [Haemophilus influenzae R3021] gi|144984368|gb|EDJ91791.1| recombination protein F [Haemophilus influenzae R3021] Length = 299 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 131/313 (41%), Gaps = 14/313 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +FRN ++ L FD +G+NG GKT++LEAI +L GR F+ A + Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 P F+ F +++ + + ++ + + ++IN + +L L + Sbjct: 61 ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD +F + RL++ RN L + S+ Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A+L +++ R E ALS I + Q P ++++++ + + Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALSPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +Y + L + D T GP ++D + S G+ K+++ + LA Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286 Query: 305 RLISNTTGFAPIL 317 + I Sbjct: 287 EHLMKEKQRHCIF 299 >gi|229077279|ref|ZP_04209964.1| DNA replication and repair protein recF [Bacillus cereus Rock4-2] gi|228706028|gb|EEL58331.1| DNA replication and repair protein recF [Bacillus cereus Rock4-2] Length = 293 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 63/290 (21%), Positives = 121/290 (41%), Gaps = 9/290 (3%) Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 +E + + ++N + + + + + + P + G RRRFLD + I Sbjct: 1 MELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQI 60 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINA 207 P + + +++++ RN LL + + + Q+ E G KI R E ++ Sbjct: 61 APVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHL 120 Query: 208 LSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 L + + +++ +D +KE Y + ++ + TL Sbjct: 121 LQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKIKEVYYESFQSVKQREIFRGTTL 180 Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 IGPHR DL K + + GS G+Q+ + + LA LI + PILLLD++ + Sbjct: 181 IGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLSE 239 Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQALC 374 LD+ +++ L + Q F+T T + + AK + ++N C Sbjct: 240 LDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDC 288 >gi|291517731|emb|CBK71347.1| DNA replication and repair protein RecF [Bifidobacterium longum subsp. longum F8] Length = 412 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 140/375 (37%), Gaps = 18/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + + R R IN + ++ + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 P R+ SG RR +++ ++P + + + F R+ + R LL + + Sbjct: 118 FTPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNNGQ 177 Query: 180 -----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 S Q E GV + R +I L+ +++LT Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSF 237 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 F + ++ + LIGP R D+ ++ S GE Sbjct: 238 DEVLMFDDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLELAGIP-AREFASNGEMWT 296 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + + +A ++ + G PI++LD++ A LD+ +R + Q+ +T + Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGD 355 Query: 354 VFDSLNETAKFMRIS 368 V D E+A + ++ Sbjct: 356 VPDY--ESAHRIDVA 368 >gi|194477068|ref|YP_002049247.1| putative DNA repair and genetic recombination protein RecF [Paulinella chromatophora] gi|171192075|gb|ACB43037.1| putative DNA repair and genetic recombination protein RecF [Paulinella chromatophora] Length = 390 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 173/376 (46%), Gaps = 15/376 (3%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L + +FRNY+ L + + +G+NG GK+N+LEA+ L R + D+ Sbjct: 21 RLHRLELKQFRNYSYQELQLETPRLLLIGNNGEGKSNLLEAVELLGSLHSNRCKNDHDLI 80 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R G S ST + + E +++I+ + R + N + +L LR Sbjct: 81 RQGHSS--STISAIIDSEDSIELTIQ-----EHGGRQAKRNGKKLERQHDLLNSLRCVGF 133 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSW 182 ++ G RR++LD++V ++P + + +++RL++ RN+LL + + Sbjct: 134 SSLDLQLVRGEPALRRQWLDKVVIKLEPVYNELLNNYKRLLKQRNQLLRKDISNNNRNEL 193 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSF 240 + Q++ + +I+ R + L L + + Q+ + +L+L F ++S Sbjct: 194 LDIFDQQLSLISARIHRRRYRALKRLEPLAVYWQQQLSKGREELALVYKSGISFIGEESE 253 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + + +L R+ + + R +GPHR ++ + +GS G+Q+ ++ + Sbjct: 254 DSCRNKLLMQLKKQRQNELYTYRCTVGPHRDEIDIMLNGM-FARYYGSAGQQRTTVLALK 312 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359 +A LI+ PIL+LD++ A LD ++ L + + Q ++ T+ +F Sbjct: 313 IAELELINQVHKDPPILILDDVMAELDSGRQELLLKTM-GANYQCLISSTNLDIFTPDWR 371 Query: 360 ETAKFMRISNHQALCI 375 + ++ + + + + Sbjct: 372 KNSQVIEVVSGHLKSV 387 >gi|213690932|ref|YP_002321518.1| DNA replication and repair protein RecF [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254790465|sp|B7GSG2|RECF_BIFLI RecName: Full=DNA replication and repair protein recF gi|213522393|gb|ACJ51140.1| DNA replication and repair protein RecF [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320456978|dbj|BAJ67599.1| recombination protein RecF [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 412 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 73/375 (19%), Positives = 142/375 (37%), Gaps = 18/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + + R R IN + ++ + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P R+ SG RR +++ ++P + + + F R+ + R LL + ++ Sbjct: 118 FTPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQ 177 Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 S Q E GV + R +I+ L+ +++LT Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVVLTRMRAHVISLLAEPFAAIYADLAGAGEQVTLTYAPSF 237 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 F + ++ + LIGP R D+ +D S GE Sbjct: 238 DEVLMFNDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLDLAGIP-AREFASNGEMWT 296 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + + +A ++ + G PI++LD++ A LD+ +R + Q+ +T + Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRAQILDFARK-QDQVLITVAAEGD 355 Query: 354 VFDSLNETAKFMRIS 368 V D E+A + ++ Sbjct: 356 VPDY--ESAHRIDVA 368 >gi|257124818|ref|YP_003162932.1| DNA replication and repair protein RecF [Leptotrichia buccalis C-1013-b] gi|257048757|gb|ACV37941.1| DNA replication and repair protein RecF [Leptotrichia buccalis C-1013-b] Length = 362 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 75/371 (20%), Positives = 159/371 (42%), Gaps = 13/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++ + FR +L FD + G NG GKT+++EA+ FL+ G+ FR + Sbjct: 1 MYLDQISFNNFRCLVDGKLKFDRYFNLIYGKNGQGKTSLIEAVHFLATGKSFRTKKVKE- 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + F + + +I I ++ +D+ + I+ + + L I Sbjct: 60 IRKYNLNRLIVFGKYRHKDLSENI-IAIDVNEDK--KDFYIDREKNKYI-NYVGLLNIIS 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + G RR F + + + + +++FE++++ RN+L+ E Sbjct: 116 FIPEDIELIIGNPGIRRNFFNYEISQAKKEYLQSIVNFEKILKVRNKLIKEKKTGEEIYK 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCA 242 + E G+ I + R E I LS L+ +K +KL FL ++ Sbjct: 176 IYNEKFIEEGLNIVLNRREFIKKLSILLNLNYRKLFDENSELKLKYDCFLGDVEKKTREE 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 LKE++ + + +L+GP + D + + K + S GE+K ++ + ++ Sbjct: 236 LKEKFEILCRRKSEREKFLGYSLLGPQKDDFVFELNGKNAKA-YSSQGEKKSIIFSLKIS 294 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++ PI ++D+I+++ DE ++ ++ + Q F+T T+ L Sbjct: 295 EIDILIKEKKEYPIFIMDDIASYFDEVRKKSILSYFVNKKIQCFITSTE-----DLGIEG 349 Query: 363 KFMRISNHQAL 373 K + + + Sbjct: 350 KKFIVEKGKII 360 >gi|313902782|ref|ZP_07836179.1| DNA replication and repair protein RecF [Thermaerobacter subterraneus DSM 13965] gi|313466902|gb|EFR62419.1| DNA replication and repair protein RecF [Thermaerobacter subterraneus DSM 13965] Length = 377 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 87/358 (24%), Positives = 154/358 (43%), Gaps = 19/358 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + +FR+Y L D+ T+ G NG+GKTN+LEAI F + GR R D+ Sbjct: 1 MVIRRVVLRQFRSYEQATLELDSGLTLLAGPNGIGKTNLLEAIHFAATGRSPRTTRDTDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+P + + + G + + L + ++ L+++ + + +L L I + Sbjct: 61 IRHGAPLAYVRVEWDDPVAGRRVVEMALHRQHGKA---LRLDGRKRQRLADLQGALPIVY 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181 P + RR FLD ++ + P + + + D++R++ RN+LL E G S Sbjct: 118 FAPESLALVKAGPAARRGFLDDLLGQLVPGYTQLLHDYQRVLAQRNQLLREIRAGRAAGS 177 Query: 182 WCSSIEAQMAELGVKINIARVE----MINALSSLIMEYVQKENFPHIKLSLTGF---LDG 234 + + + G I R + ++ L L DG Sbjct: 178 LLAIWDEPLYRHGQAIRQRRRRLLDELAPLAAAAAGRVAAGGAAGAGVLELDYLAAEPDG 237 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + + + E L + + TL GP R D + + D A S G+Q+ Sbjct: 238 RVEGGAVSSPE----GLAAFHREEVARGTTLWGPQRDDFAL-FLDGQDARAFASQGQQRA 292 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + LA LI G P+LLLD++ + LD +R L V D+ Q+ +T T+ Sbjct: 293 LALALTLAQVELIHRRLGRWPVLLLDDVLSELDGKRRRYLLEAVCDLP-QVILTATEP 349 >gi|304309655|ref|YP_003809253.1| Recombinational DNA repair ATPase [gamma proteobacterium HdN1] gi|301795388|emb|CBL43586.1| Recombinational DNA repair ATPase [gamma proteobacterium HdN1] Length = 393 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 76/389 (19%), Positives = 151/389 (38%), Gaps = 28/389 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L IS+FRN ++ + VG NG GKT++LEA+ L+ G+ FR + Sbjct: 1 MAIVKLEISDFRNLKAVEIAPAQGLNWVVGPNGSGKTSLLEALHLLATGKSFRANNLRSC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + + + +E VR + ++ + + + L + + Sbjct: 61 IRGGAKTCRVVCLKNAAAYPDVIQRLGVERDLSGGVRAV-LDQLEVTKLSGLANQIAVCT 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPR--HRRRMIDFERLMRGRNRLLTE------- 175 L+P + G RR FL +F ++ + + + D+ ++ RN LL Sbjct: 120 LLPDSINLLIGDPSLRREFLGWSMFHVEHNSDYLQVLRDYRFSLQQRNALLRRLNGSELP 179 Query: 176 ----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 S + Q+ + +K++ R + Y + + L + + Sbjct: 180 LSGNEAIRSKELDGWDRQLGKFALKLDERRSHFMTLFRE---RYFSLISKEQLNLRSSSY 236 Query: 232 LDGKFDQSF---CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + L + R D T GPHR+D+ + Y K + + S Sbjct: 237 SSNEVHFELLRGWPDGVSLEDALAEARMRDIERGFTGSGPHRADIRISYAGKPVR-DYFS 295 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 G+ K ++ L A LI ++ G + + D+ A LDE+ +++ + I Q F+ Sbjct: 296 RGQLKHLISICVLVQADLIRSSRGKDGLVFIFDDAFAELDENHASSVLAALRSISVQTFV 355 Query: 348 TGTDKS----VFDSLNETAKFMRISNHQA 372 T +D + D++ + + + + Sbjct: 356 TTSDAAVANRHVDAIQD--RMFHVEHGDV 382 >gi|50083300|ref|YP_044810.1| recombination protein F [Acinetobacter sp. ADP1] gi|81827570|sp|Q6FG19|RECF_ACIAD RecName: Full=DNA replication and repair protein recF gi|49529276|emb|CAG66988.1| DNA replication, recombinaison and repair protein [Acinetobacter sp. ADP1] Length = 358 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 78/373 (20%), Positives = 153/373 (41%), Gaps = 23/373 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I LNI RN ++ L IF G NG GKT+ILEA+ L+ GR FR Sbjct: 1 MQITRLNIERVRNLKAVALSGLQPFNIFYGANGSGKTSILEAVHLLATGRSFRTHMPKHY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + G+ + + +++N + +L K L + Sbjct: 61 IQQNAQDAIIFAQSLSEKIGMQKLL--------SGEQLIKVNGDTVATQGQLAKLLPLQH 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 L P I + RR+ LD ++F ++P + R ++ RN LL + + Sbjct: 113 LDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNMLLKTKRQLSLAEL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 ++E G ++ R+ + + + + P +++ L + Sbjct: 173 EPWNKMLSEYGEMLHSQRLVTVERWKDFFQQDLAQL-LPDLQIELEYSPGFHSEVGLW-- 229 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + D R T GPHR+DL + S G++K++++ + L+ Sbjct: 230 -----QDLLNYHNKDVERRYTEYGPHRADLRLKTALGDADDVL-SRGQKKLLMMALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK----SVFDSLN 359 ++ + ++LLD+++A LD + + L ++ +GSQ+F+T D D L+ Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDSNAQRRLIERLSQLGSQVFITTLDHQAVTQHLDGLS 342 Query: 360 ETAKFMRISNHQA 372 + + + + Q Sbjct: 343 ISYQLYNVDHGQV 355 >gi|146295088|ref|YP_001178859.1| DNA replication and repair protein RecF [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408664|gb|ABP65668.1| DNA replication and repair protein RecF [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 349 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 143/349 (40%), Gaps = 21/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + + FRN+ F + +G N GKTN+LEAI F G+ F+ + ++ Sbjct: 1 MIIKSIYLENFRNHNERFFEFKDGINLILGKNASGKTNLLEAIYFCLCGKSFK-SKDTNL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 S F ++E D+ + DR + + IN+ I + EL + + Sbjct: 60 ISFDSEYF-----KLEASVLANDVEYGILCYVDRLGQKRIMINEKKINRLSELIEKFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RR+FLD V + P + D+++ + RN L Y Sbjct: 115 YFEPDSTELIKQDPKVRRKFLDMEVAKLYPYMIKTFQDYQKALMSRNAFLK-SYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++++LG +I R E I LS E K + + + Sbjct: 174 DVYDIELSKLGCQILKKREETIKRLSEATKEIWYKVFEDKSTIDIVFRPSI-----PSSS 228 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +EEY +L + D T G HR D V + + S G+ K + I LA Sbjct: 229 EEEYYSQLKKQFEKDVQMGFTTKGVHRDDFDVFINGQNAK-EYASEGQIKFACIAISLAS 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 A+L P+LLLD+I + LD +KR + ++ D Q +T D+ Sbjct: 288 AKLF-----EKPVLLLDDIFSELDSEKRKNVLKLCKDY--QAIITSADE 329 >gi|209542191|ref|YP_002274420.1| recombination protein F [Gluconacetobacter diazotrophicus PAl 5] gi|209529868|gb|ACI49805.1| DNA replication and repair protein RecF [Gluconacetobacter diazotrophicus PAl 5] Length = 373 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 131/367 (35%), Positives = 191/367 (52%), Gaps = 5/367 (1%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L +++FRNY L +A T+ G+NG GKTN+LEA+S L PGRG R A A++ Sbjct: 3 RLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAEMA 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + + AR G +G A I + R R + + +R L HL W Sbjct: 63 RHGT-TIWGVAARFTGPDG-APFDIATGSDPARPERRVFRRDGETLRSRAALADHLSAVW 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L P MDR+F RRRFLDR+V A++P H R + ++ M RNRLL G D W S Sbjct: 121 LTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQAMGQRNRLLAAGRADPGWLS 180 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCAL 243 ++E MA V + AR+ ++ L+ V + FP +L + + D+ A+ Sbjct: 181 ALEDSMARHAVAASAARLALVTQLNGEAAHTV-PDGFPPARLDILCPIVQQLRDRPALAV 239 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++ +L GR D +G HR+D+ + A STG+QK +L+G+ LAH Sbjct: 240 EDWLRGRLAAGRAADGARGGAGMGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLAH 299 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 A L++ + G AP++LLDE HLDE +R ALFR V + + MTGTD F L A Sbjct: 300 AALMTRSRGEAPMILLDEPLVHLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRAG 359 Query: 364 FMRISNH 370 F+ N Sbjct: 360 FVSPRNG 366 >gi|193211679|ref|YP_001997632.1| DNA replication and repair protein RecF [Chlorobaculum parvum NCIB 8327] gi|259563359|sp|B3QQY5|RECF_CHLP8 RecName: Full=DNA replication and repair protein recF gi|193085156|gb|ACF10432.1| DNA replication and repair protein RecF [Chlorobaculum parvum NCIB 8327] Length = 368 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 79/354 (22%), Positives = 153/354 (43%), Gaps = 12/354 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ ++I+ FRN+ L T G NG GKT+ILEAI + + RGF + + Sbjct: 1 MRLDSISIANFRNHTLLEFEPGHSVTNIYGRNGSGKTSILEAIHYCALTRGFSGNNDREY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G F + G +S+ + + + +N+ ++ + Sbjct: 61 LKFGEELFTIRSSFTSGQGIATKVSVAYSP---KREKRILVNEQELQTFSSHIGTIPCVT 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSS 181 P I +G ERRRF+D + D ++ ++ + R+++ RN LL+ + F S Sbjct: 118 FTPREMVIINGAPAERRRFIDTAICQYDRKYLSDLLLYRRILQQRNALLSSEQDPRFIDS 177 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + Q+ +I + R I +S++ + Q + S+ ++ Sbjct: 178 ALDVLTDQLVATATEIVLVRKRFIEHFTSMLGDVYQWIP-EGAEPSILYQSSLGHHENLY 236 Query: 242 A---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +++ + ++ ++ + R+TL GPHR DL Y +K + S G+Q+ LV Sbjct: 237 EKDKIQQVFRERFETLKQQELQRRQTLAGPHRDDLQF-YLNKREIRKYASQGQQRAFLVA 295 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + +G PI LLD++ + LDE + + G Q+ +T T K Sbjct: 296 MKMTLQGYLYEASGEIPITLLDDLFSELDEVVSGTMVETLATKG-QVIITSTGK 348 >gi|313680849|ref|YP_004058588.1| DNA replication and repair protein recf [Oceanithermus profundus DSM 14977] gi|313153564|gb|ADR37415.1| DNA replication and repair protein RecF [Oceanithermus profundus DSM 14977] Length = 344 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 96/347 (27%), Positives = 153/347 (44%), Gaps = 23/347 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L FRN SL LV VG N GKTN+LEAI FL+ G R A AD Sbjct: 1 MILTRLRQQNFRNLTSLELVLPPGPLALVGPNASGKTNLLEAI-FLALGGEVRGA-LADR 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ FA VE G+ ++ E R R R +++N+ + EL ++ W Sbjct: 59 VRFGAAEA-RLFAEVETQLGV----VRFEQRFGRGGREIRLNEAPA-SLRELAEYAGAVW 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G ERRR+LD+ + PR+R + +E+ +R RN L Sbjct: 113 IRPEDIALVRGGPEERRRWLDQALMRFSPRYRALLSAYEKTLRQRNAALK---TSPRGLG 169 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++A G ++ R ++ L+ L ++ + + L L A Sbjct: 170 VWNERLAGYGEQVLHWRRRILERLAPLAAAAYRELDAAPLVLELR----------ETAPP 219 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E A+ L + + TL GPHR D+ + + S GE + V + + LA Sbjct: 220 ERLAEVLEANLQEELERGVTLAGPHRDDVRL-LLGGLDAVKFASRGEARSVALALRLAEH 278 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 RL++ G P+LL+D+ +A LD ++ AL + + Q ++GT Sbjct: 279 RLLAEHHGEPPLLLVDDFAAELDARRQAALLAYASGLP-QAVLSGTH 324 >gi|317482361|ref|ZP_07941381.1| DNA replication and repair protein RecF [Bifidobacterium sp. 12_1_47BFAA] gi|316916241|gb|EFV37643.1| DNA replication and repair protein RecF [Bifidobacterium sp. 12_1_47BFAA] Length = 412 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 73/375 (19%), Positives = 141/375 (37%), Gaps = 18/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I G NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRASSTLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + + R R IN + ++ + Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 P R+ SG RR +++ ++P + + + F R+ + R LL + ++ Sbjct: 118 FTPEDQRLVSGDPGARRVMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQ 177 Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 S Q E GV + R +I L+ +++LT Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSF 237 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 F + ++ + LIGP R D+ +D S GE Sbjct: 238 DEVLMFDDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLDLAGIP-AREFASNGEMWT 296 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353 + + + +A ++ + G PI++LD++ A LD+ +R + Q+ +T + Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGD 355 Query: 354 VFDSLNETAKFMRIS 368 V D E+A + ++ Sbjct: 356 VPDY--ESAHRIDVA 368 >gi|302380115|ref|ZP_07268588.1| DNA replication and repair protein RecF [Finegoldia magna ACS-171-V-Col3] gi|302312057|gb|EFK94065.1| DNA replication and repair protein RecF [Finegoldia magna ACS-171-V-Col3] Length = 355 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 81/353 (22%), Positives = 157/353 (44%), Gaps = 13/353 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RN+ + L F + VG N GKTNILEAI+ G+ F+ + + + Sbjct: 1 MIVQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G +G E DI+IK + + L +N+ + + E N++ Sbjct: 61 IKFGEDEARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYFECI 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180 P +I RR+FLD + +D +R + + +++ RN+L+ ++S Sbjct: 115 VFKPDDLKIIKESKSLRRKFLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNSYFN 174 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 ++ Q+++ G I R + L + + + + L + ++ + Sbjct: 175 EQLKALNIQLSDFGSYIMHKRKSYVERLHLIAKNVCKNLSDENDDLYMENKFSIRYVEDM 234 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K Y K L D + D +++T +G HR DL V DK S + + ++ + Sbjct: 235 TDQKNTYYKSLRDILEKDLENKQTNLGIHRDDLDVLINDKQAKF-FASQAQVRTAILSMK 293 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 LA L PI+LLD++ + LD+ + N + R + D Q F+T ++++ Sbjct: 294 LAQLDLSRFYNDRMPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSERA 344 >gi|284928773|ref|YP_003421295.1| DNA replication and repair protein RecF [cyanobacterium UCYN-A] gi|284809232|gb|ADB94937.1| DNA replication and repair protein RecF [cyanobacterium UCYN-A] Length = 380 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 173/385 (44%), Gaps = 21/385 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K +++ FRNY + +Q TI +G+N GK+N+LEAI L+ + R D+ Sbjct: 1 MYLKNIHLYTFRNYYKQSVNLQSQKTILLGNNAQGKSNLLEAIELLATLKSHRTRRDQDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S A VE + G +++SI L + RS L +N + E H+ Sbjct: 61 ILEGEKS-SQITANVERIYGQSELSITLRSSGKRS---LMLNHEKLHRHLEFLGHINAVE 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 + G RR +LD ++ ++P + + + +++R RN LL Sbjct: 117 FSCLDLDLVRGSPEIRRIWLDTLLIQLEPIYAHIINQYHKILRQRNSLLKIIRKQFNDSK 176 Query: 180 --------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 S + Q+AE G ++ R +I L L ++ + + L + Sbjct: 177 KSDNFMTTISQLKLWDEQLAEAGTRVTRRRNRVIQRLVPLAQKWHKSISGKAELLDINYL 236 Query: 232 LDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + ++ +++ + +K+ ++ T++GPHR D+ + +K +GS G Sbjct: 237 SNITIENENHQTIQQRFLEKIEQRSIIERNLATTVVGPHRDDVEFNI-NKNQAKFYGSQG 295 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ +++ I LA +LI + G P+LLLD++ A LD +++ L + Q +T T Sbjct: 296 QQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDHNRQKQLLEAIQGKF-QTLITTT 354 Query: 351 DKSVFD-SLNETAKFMRISNHQALC 374 FD ++++ +++ + Sbjct: 355 HLPTFDTEWLKSSQIIKVERGKIFQ 379 >gi|239916574|ref|YP_002956132.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC 2665] gi|281414962|ref|ZP_06246704.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC 2665] gi|259563665|sp|C5C7X6|RECF_MICLC RecName: Full=DNA replication and repair protein recF gi|239837781|gb|ACS29578.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC 2665] Length = 404 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 87/380 (22%), Positives = 153/380 (40%), Gaps = 24/380 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FR+Y L T+ +G NGVGKTN++EAI +L + R +S A + Sbjct: 1 MYLSHLTVADFRSYRWADLELTPGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G RV G +++K+E RS R +R + L LR Sbjct: 61 VRFGRDRA-RIAGRVH--RGSRTVALKVEILPGRSNRVAINRGASVRAKEGL-GILRTVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P + +G RRR LD+++ + P D+ER++R RN LL G W Sbjct: 117 FAPEDLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSGRGSRRWGP 176 Query: 183 -----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + + + G ++ R+ ++ L+ + E + Sbjct: 177 EEDATLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLA 236 Query: 238 QS-------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + L + + L R+ + TL+GPHR +L + A + S G Sbjct: 237 RGTHAEVPAVADLATDMRRTLEAQREEERARALTLVGPHRDELALFLGP-APARGYASHG 295 Query: 291 EQKVVLVGIFLAHARLISNTTGFA---PILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 E + + + +A ++ P+L+LD++ A LD +R L +V Q+ + Sbjct: 296 ETWSLALALRMAAYDVLVADDPDPDARPVLILDDVFAELDAARRRRLAALV-HRAEQVIV 354 Query: 348 TGTD-KSVFDSLNETAKFMR 366 T + V + L +R Sbjct: 355 TAAALEDVPEELTAHRVLIR 374 >gi|190571298|ref|YP_001975656.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018695|ref|ZP_03334503.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357570|emb|CAQ55009.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995646|gb|EEB56286.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 359 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 104/368 (28%), Positives = 167/368 (45%), Gaps = 11/368 (2%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 MT IK L + FR++++ L D + + G NG+GKTNILEAIS L+ G ++A Sbjct: 1 MTTHCYIKKLKLYNFRSHSNFELDLDDRPVVVTGKNGIGKTNILEAISLLAKSNGMKKAK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 ++ S + + L I I + +QI+ L + Sbjct: 61 INEMQNRRSNESWVVYYDFFNGAELNSIGIGKNLN----KKLIQIDGKTQSSYSSLYRIS 116 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + WL+P MD I +R +FLDR+V + + + + + R++LL E D Sbjct: 117 NVIWLIPQMDYILLNSPSDRLKFLDRIVSLFEENYTYCYMKYRKAKHERSKLLRENILDE 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW SS+E MA + I R ++ L I + E FP L + L + Sbjct: 177 SWLSSLENVMATNAIDILRMRSSVLKILQDTI-DNHSCEFFPKASLKFSSQL------TL 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E + +L + R+ DS++ R H + V + I STGEQK++L+ I Sbjct: 230 NDTAEYFQNRLKENREKDSLTGRVTFSVHNDNFWVFCQKGDMPINLCSTGEQKLLLLSII 289 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ + AP+LLLD+I +HLD+D R L V I Q ++T ++ F++ Sbjct: 290 LSSVKARCIHYNKAPLLLLDDIMSHLDKDYRKVLMEEVLSIQCQTWITDVNQDNFNNYLC 349 Query: 361 TAKFMRIS 368 + KF +S Sbjct: 350 SFKFFELS 357 >gi|169823701|ref|YP_001691312.1| DNA replication and repair protein [Finegoldia magna ATCC 29328] gi|303234454|ref|ZP_07321092.1| DNA replication and repair protein RecF [Finegoldia magna BVS033A4] gi|167830506|dbj|BAG07422.1| DNA replication and repair protein [Finegoldia magna ATCC 29328] gi|302494409|gb|EFL54177.1| DNA replication and repair protein RecF [Finegoldia magna BVS033A4] Length = 355 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 80/353 (22%), Positives = 157/353 (44%), Gaps = 13/353 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RN+ + L F + VG N GKTNILEAI+ G+ F+ + + + Sbjct: 1 MIVQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G +G E DI+IK + + L +N+ + + E N++ Sbjct: 61 IKFGEDEARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYFECI 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180 P +I RR+FLD + +D +R + + +++ RN+L+ ++S Sbjct: 115 VFKPDDLKIIKESKSLRRKFLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNSYFN 174 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 ++ Q+++ G I R + L + + + + L + ++ + Sbjct: 175 EQLKALNIQLSDFGSYIMHKRKSYVERLHLIAKNVCKNLSDENDDLYMENKFSIRYVEDM 234 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K Y K L D + D +++T +G HR DL + DK S + + ++ + Sbjct: 235 TDQKNTYYKSLRDILEKDLENKQTNLGIHRDDLDILINDKQAKF-FASQAQVRTAILSMK 293 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 LA L PI+LLD++ + LD+ + N + R + D Q F+T ++++ Sbjct: 294 LAQLDLSRFYNDRMPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSERA 344 >gi|117923321|ref|YP_863938.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1] gi|259563664|sp|A0L3I9|RECF_MAGSM RecName: Full=DNA replication and repair protein recF gi|117607077|gb|ABK42532.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1] Length = 382 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 97/375 (25%), Positives = 162/375 (43%), Gaps = 15/375 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FRN L F + G NG GK+N+LEAI L+ GR FRRA A + Sbjct: 1 MQLDRLTLRDFRNITEAELRFGPGLNLITGPNGHGKSNLLEAIGLLATGRSFRRAPAAAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G P F + G D+ +LE + ++IN L + L Sbjct: 61 RRYGQPWF-----HLRGETTARDLGHRLEFFGQAGRQAVKINGKSASAASALGQALAAVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDP-----RHRRRMIDFERLMRGRNRLLTEGYFD 179 + P R+ RR F+D + F H D+++ ++ RNRLL + Sbjct: 116 VTPDTLRLVQDGPGVRRGFVDWVAFTCGRQQGALSHAVVAGDYQKALKARNRLLKLPRVE 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSLTGFLD---GK 235 + + E+Q+A LG K+ R +++ L + ++ + ++L+ LD Sbjct: 176 AGEWLAWESQLATLGAKMARNRYQVLQRLQPHLDRMLEDLGMAQRLTITLSCQLDRHGTH 235 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + + A Y + L + R + S T IGPHR DL++ A+ GS G+QK Sbjct: 236 WAEDESAAASLYRRLLAENRASERRSGGTAIGPHRDDLVLRLDGHAL-AQFGSQGQQKRA 294 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + + LA A+L+ G P+ +LD+ +A LD D + L ++ G QIF+ Sbjct: 295 ALALKLAEAQLLQEQLGEWPLFVLDDPAAELDTDGMSRLMGLLARCGGQIFVASCRAQTI 354 Query: 356 DSLNETAKFMRISNH 370 + + Sbjct: 355 PWSGLAPQRFYVDQG 369 >gi|256545953|ref|ZP_05473308.1| DNA replication and repair protein RecF [Anaerococcus vaginalis ATCC 51170] gi|256398375|gb|EEU11997.1| DNA replication and repair protein RecF [Anaerococcus vaginalis ATCC 51170] Length = 357 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 162/370 (43%), Gaps = 16/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L +++FRNY S + F+ IF+GDN GKTN+LE+I +L+ + F+ D+ Sbjct: 1 MWIQNLKLNKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ++G+ + + + + + +N++ +L ++ Sbjct: 61 IMFNEKEM-----SLDGIIRKNQSFKNVHISVNENKKDIFVNEIKYDKNKDLKSLFKLVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182 P I RR +D ++ +++ ++ DF++++ RN+LL + Sbjct: 116 FTPEDLNIIKDGPNFRRDLIDDIIISVNFSYKAVKKDFDKILSQRNKLLKNQRSKYFKTE 175 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + Q+ L KI R + I+ +++ + L++ + + Sbjct: 176 LMAFDQQIIRLNYKIYRFREKYISLINTYANKNHLNLTENKENLTIIYKPNIR-----AK 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EEY +K D RT G R ++ + K T GS G+Q+ ++ I LA Sbjct: 231 SMEEYGEKFSKNISDDLKYFRTTSGSQRDEIDIIINGKD-TKKFGSQGQQRSAILNIKLA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + LI NT+ I+L D++ + LDE + N L + + Q +T T+ D ++ ++ Sbjct: 290 NVNLIENTSQDKAIILFDDVFSELDEKRSNFLLENLGEF--QTIITATNTKSLDGVS-SS 346 Query: 363 KFMRISNHQA 372 K +I + + Sbjct: 347 KIRKIKDGRI 356 >gi|162456448|ref|YP_001618815.1| RecF protein [Sorangium cellulosum 'So ce 56'] gi|161167030|emb|CAN98335.1| RecF protein [Sorangium cellulosum 'So ce 56'] Length = 383 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 158/373 (42%), Gaps = 14/373 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I EFRN + + + + G+NG GKT++LEAI F + R FR A++ R Sbjct: 17 LERLHIREFRNLGRVDVEPAPRINVIAGNNGQGKTSLLEAIYFAATSRSFRTHRLAELVR 76 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+P + VE + L ++ + + ++I+ + + Sbjct: 77 HGAPIASARARFVERRDALQPLAREQTAAVEHKRCVVRIDGNRPPSLASFATRSPVVAFH 136 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW---- 182 + +G + RR LDR+ +DP+ + + +R R+ LL G + Sbjct: 137 AEELALSTGPASARRTLLDRLALFMDPQSADHRARYAQALRARHELLHRGGGAQAQASAE 196 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + EA A G + AR + AL+ + + P + L+ G D Sbjct: 197 LDAFEALCALHGAALTRAREAAVQALAPELTHAFARIAAPDLTLAARYAPGGGGD----- 251 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E+ + L + R+ D+ GPHR DL+++ + S G+ + + + + A Sbjct: 252 -AEQAREALREQRRRDAHRPSAGYGPHRDDLLLELDGHPARVV-ASQGQHRALTLALKAA 309 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 I++ G PILLLD++S+ LD D+ ALF + Q+F+T T + + + + Sbjct: 310 ETAAIASVRGVEPILLLDDVSSELDPDRTAALFMFLGMARGQVFLTTTRRDLIVTPGVPS 369 Query: 363 ---KFMRISNHQA 372 + + Sbjct: 370 SERRDFHVEGGAV 382 >gi|255320700|ref|ZP_05361877.1| DNA replication, recombination and repair protein [Acinetobacter radioresistens SK82] gi|262380669|ref|ZP_06073822.1| recombinational DNA repair ATPase [Acinetobacter radioresistens SH164] gi|255302316|gb|EET81556.1| DNA replication, recombination and repair protein [Acinetobacter radioresistens SK82] gi|262297617|gb|EEY85533.1| recombinational DNA repair ATPase [Acinetobacter radioresistens SH164] Length = 360 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 77/376 (20%), Positives = 155/376 (41%), Gaps = 23/376 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I LNI RN +++ L +F G NG GKT+ILEAI L+ GR FR Sbjct: 1 MYITRLNIERVRNLSAVALSELQPFNVFYGANGSGKTSILEAIHLLATGRSFRTYIPKHY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ I ++ ++ +++N + +L K L + + Sbjct: 61 IQSGASDTIVFA-----QSATEKIGMQKMLSGEQ---IIKVNGDTVATQGQLAKMLALQY 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 + P I + RR+ LD ++F ++P + + R ++ RN LL Sbjct: 113 IDPLSTDIIDHGAKPRRQLLDWLMFHVEPEFYQTWQYYSRALKQRNSLLKSRQTLSVDEL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +A G ++ R +++ + + + P +++ L +Q Sbjct: 173 DPWNKMLASYGELLHAQRSQVMEQWKIYFKQDLSQL-LPDLEIELDYVSGFHSEQG---- 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + L + D R T GPHR+DL + S G++K++++ + L+ Sbjct: 228 ---LYQDLTLYHQKDLDRRYTEYGPHRADLRLK-TPLGDADNILSRGQKKLLIMALKLSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359 ++ + ++LLD+++A LD + L ++ +GSQ+F+T + + L+ Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFITTLEHKSVQQHLHDLS 342 Query: 360 ETAKFMRISNHQALCI 375 + + + + Q + Sbjct: 343 ISYQLFHVEHGQVSVV 358 >gi|114319169|ref|YP_740852.1| DNA replication and repair protein RecF [Alkalilimnicola ehrlichii MLHE-1] gi|114225563|gb|ABI55362.1| DNA replication and repair protein RecF [Alkalilimnicola ehrlichii MLHE-1] Length = 354 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 84/364 (23%), Positives = 149/364 (40%), Gaps = 20/364 (5%) Query: 9 FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68 L RN L A + VG N GKT++LEAI F++ R FR A + G Sbjct: 2 SLAAEGVRNLQPFELTPGAGINVVVGANAAGKTSLLEAIYFVARTRSFRATRTAQMIGNG 61 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128 + + + D ++++ R + EL ++L + + Sbjct: 62 HEALWV---------RAQTQGHTIGVARDSQETQVRLDGRDGRSLSELARYLPVQVINSE 112 Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188 R+ RR FL+ VF ++P+ + R +R RN L G +W + + Sbjct: 113 HQRLLLDGPAVRRSFLNWAVFHVEPQFSTVWGRYVRALRQRNAALKAGESRLAW--AYDE 170 Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 + E I+ R +I+AL V++ P ++L + D+ A Sbjct: 171 GLIETADTIDRNRRHLIDALEPRWSALVRRW-LPDEPVALHYRPGWRSDEP-------LA 222 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 +L R++D T GPHR+DL S G+QK++++ + LA A + Sbjct: 223 DRLEAQRELDRQRGFTNSGPHRADLSFRVAG-VEAQHRLSRGQQKLLVLALLLAQAAVTH 281 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 TG + LL+D+++A LD +R A+ + G+Q F+T + + A++ + Sbjct: 282 TLTGQSLTLLVDDLAAELDPARRAAVVEAIASSGNQAFLTAIEPGDIPLAPDAAQWFHVE 341 Query: 369 NHQA 372 + Sbjct: 342 QGRI 345 >gi|171912992|ref|ZP_02928462.1| recombination protein F [Verrucomicrobium spinosum DSM 4136] Length = 356 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 156/369 (42%), Gaps = 21/369 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++++ + +FR + RL + T+ VG NG GKT++LEA L + R ++ +D+ Sbjct: 1 MLLEWMQVRDFRCFTEARLALHPETTLLVGKNGQGKTSLLEAACVLMRLQSPRTSTRSDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVVDELNKHLRIS 123 R G+ + + EG+ G KL + R + +ND V R D L + R+ Sbjct: 61 IRFGAQTCVT-----EGVVG----GRKLRVAQSPTARRVAVNDSVCPRAGDYLIQSARVV 111 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182 W+ S + G + RRR+LD + P + + +ER +R RN LL Sbjct: 112 WMDHSDMNLARGGAEHRRRYLDFAAAQLFPEYLNALKSYERALRSRNFLLKRDAVISWRQ 171 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + +AE G I R E++ + + E + G G Sbjct: 172 VDAYGRILAEHGAAIRRCRDELVQRVQEPVTEAHLGLSA--------GVEPGAVAYVPGY 223 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E+ L + R ++ R T +G HR DL + + S G+Q+ + + + LA Sbjct: 224 PGEDLEAALMEVRDSEARLRTTQVGVHRDDLALTIHGRPAGA-FASEGQQRTLCLALKLA 282 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 AR++ G P+LL+D+I LD+ +R AL + G Q +T T Sbjct: 283 QARVLEEAQGEPPLLLIDDIFGELDKTRRQALLAYLPAHG-QKIITTTFTDWASETGVGG 341 Query: 363 KFMRISNHQ 371 + + + Sbjct: 342 MVYEVQDGR 350 >gi|300112750|ref|YP_003759325.1| DNA replication and repair protein RecF [Nitrosococcus watsonii C-113] gi|299538687|gb|ADJ27004.1| DNA replication and repair protein RecF [Nitrosococcus watsonii C-113] Length = 362 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 71/371 (19%), Positives = 142/371 (38%), Gaps = 16/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L++ FRN L + G N GKT+ LEAI L GR FR Sbjct: 1 MYITHLDVRNFRNLKHTELHPAKGVNVLSGANSSGKTSFLEAIYLLGLGRSFRTVQLIST 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G S A+V+ G ++ R+ + N ++ +L L + + Sbjct: 61 VQTGMES-LRVVAKVKQAGGSYITGVEFGPNGFRA----RTNGSTVKKRSQLATQLPLLY 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWC 183 + + G RR++LD +F ++P ++R ++ RN L Sbjct: 116 MPSYSHIMLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHALRVHKPSWRQEI 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + +++ G +I R ++ L + + ++ + P ++++ Sbjct: 176 NVWNKKLSTYGEQITSLREAILFKLRDSVSQLFMALVHQPLARVTMEFKQGWTRTAGLEE 235 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L + D ++ T GPHR+++ K + S G+QK+ + L+ Sbjct: 236 I-------LNETLNYDRVTGYTRYGPHRAEVAFYVDGKDVREIL-SRGQQKIFCYSLALS 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 A L+ + L+D+ ++ LD D R ++ +G Q+F T + + + Sbjct: 288 QADLLCRIKEQNCVFLMDDFASELDIDHRKRFLALLNKLGIQVFATTIESLSGEMKAYSG 347 Query: 363 -KFMRISNHQA 372 K + + Sbjct: 348 IKEFHVELGRV 358 >gi|221632725|ref|YP_002521946.1| DNA replication and repair protein recF [Thermomicrobium roseum DSM 5159] gi|254790496|sp|B9KZ04|RECF_THERP RecName: Full=DNA replication and repair protein recF gi|221155632|gb|ACM04759.1| DNA replication and repair protein recF [Thermomicrobium roseum DSM 5159] Length = 396 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 168/394 (42%), Gaps = 29/394 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + EFR + L LV + VG NG GKT+++EA+ L+ + FR + + Sbjct: 1 MLVRSLELEEFRCFRHLHLVLPDRGLRLVGANGSGKTSLIEALYMLATTKSFRASLERHL 60 Query: 65 TRI--GSPSFFSTFARV------EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 GS +AR+ E +I + ++ + + + +R V E Sbjct: 61 VHRSSGSELGIPPYARLAAELFTETERSTLEIVLMVDPASGTVRKLYRRDGRSLRAV-EF 119 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174 LR+ P + +G +RRR+LD ++ ID + R + + R++ RN LL Sbjct: 120 VGTLRVVLFSPEDLELVTGSPQQRRRYLDTILSTIDRAYLRALARYTRILEHRNSLLKSL 179 Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 + + + Q+ G + +AR+ + + ++ Q + L+ Sbjct: 180 AERDQRAADEQLAYWDEQLVTYGAYLLVARLRFLAEWGPRLRDHFQALDTQAQVLTTAYL 239 Query: 232 LDGKFDQSFCA-------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 +S + + Y + L R + TL+GPHR D+ Sbjct: 240 PSIDLPESLLSELAAREVADAQLIVGARYRETLERLRPDELRRGSTLVGPHRDDVEFLLG 299 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 ++ +T GS G Q++ ++ LA +I T P+LLLD+ + LD+ R L + Sbjct: 300 EEPLTA-FGSRGVQRLAVIAAKLAEIAVIHRVTDDWPVLLLDDALSELDQQHRAHLLATL 358 Query: 339 TDIGSQIFMTGTDKSVFDS-LNETAKFMRISNHQ 371 + + +Q+ +T T+ V ++ + + R+++ + Sbjct: 359 SALPAQLILTATESDVLETPVLSSLPLFRLNDGR 392 >gi|227494191|ref|ZP_03924507.1| recombination protein F [Actinomyces coleocanis DSM 15436] gi|226831925|gb|EEH64308.1| recombination protein F [Actinomyces coleocanis DSM 15436] Length = 399 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 73/372 (19%), Positives = 149/372 (40%), Gaps = 30/372 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FR+Y + T+ +G NG GKTN++EAI++L+ R + + Sbjct: 1 MYVSHLALNDFRSYKETLIELKPGITVLLGYNGQGKTNVIEAIAYLAHLSSHRVNADTAL 60 Query: 65 TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R G + R + + + +++E ++ R ++N + D L ++ Sbjct: 61 VRYPQNGENPPAAAVIRAKLHKAQRERILEIEIVKGKANRA-RLNRAPAKPRD-LLGEIK 118 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------ 175 + P + G RR FLD + + P + D+E++++ R LL + Sbjct: 119 VIVFAPEDLNLVKGDPAGRRHFLDSIATQLWPSYGVVKADYEKVLKQRASLLKQLGKSLR 178 Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--- 230 D + + + ++ R++++ L+ E + +L L Sbjct: 179 AGMKPDYAMLEIWDQPLINYASQLISLRLKLLKMLTKPANEAHKIVANGVKELRLEYVNS 238 Query: 231 --FLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 G+ D A + + L R + + L+GPHR DL + + + Sbjct: 239 LAEYSGEVDVNKLATDDIEAYQVLMKQVLESLRSAEVIRGVNLLGPHRDDLDLWLDELPV 298 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTG----FAPILLLDEISAHLDEDKRNALFRIV 338 S GE V + + L ++ + PIL+LD++ + LD +R AL + Sbjct: 299 K-GFASHGESWSVALALRLGCFEILCSEDYLGAVETPILILDDVFSELDGKRRKALLEAI 357 Query: 339 TDIGSQIFMTGT 350 + Q+ +T Sbjct: 358 SGAE-QVIITAA 368 >gi|78187987|ref|YP_378325.1| RecF protein [Chlorobium chlorochromatii CaD3] gi|78170186|gb|ABB27282.1| RecF protein [Chlorobium chlorochromatii CaD3] Length = 364 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 76/361 (21%), Positives = 151/361 (41%), Gaps = 13/361 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K++ S FRN+ SL TI G NG GKT++LE I + + +G A ++ Sbjct: 1 MKLQRTIFSGFRNHTSLLFEPSEGVTIIYGANGSGKTSLLEGIHYGALTKGLLGAPDSEC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +F + + + + ++ V ++ ++ + Sbjct: 61 LSFDTEAFTLDSHFLSDSNIPIHVLVTYQLEGEKQV---IVDRQEVKPFSSHIGRIPTIT 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + SG ERRRFLD + +D R+ R+I + R+++ RN LL + + Sbjct: 118 FSPYEISLVSGPPAERRRFLDSAISQLDHRYLDRLITYRRILQQRNALLAQLSSGEKSNR 177 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFPHIKLSLTGFLDGKFD 237 + Q+AEL + R+ + + S Y + K P I T + Sbjct: 178 NTLPLWTTQLAELSAWLVERRLLFLTSFSPYFQHYYRYIIKGEEPSINYRCTSCP-LHGN 236 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 +F L + + ++ D + +TL G HR D++ +K I + S G+ + L+ Sbjct: 237 TTFQELYQLFLQRYSDIEAQEIQRGQTLFGAHRDDVLFFLNEKEIK-RYASQGQLRSFLI 295 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + ++ A L ++ P+ L D++ + LD + + ++ + G Q +T + + Sbjct: 296 ALKISQAHLFADHLHEQPMCLFDDLFSELDGGRIEQILALLKECG-QTIITAVEPRYTEG 354 Query: 358 L 358 + Sbjct: 355 I 355 >gi|225157625|ref|ZP_03725015.1| DNA replication and repair protein RecF [Opitutaceae bacterium TAV2] gi|224802692|gb|EEG20945.1| DNA replication and repair protein RecF [Opitutaceae bacterium TAV2] Length = 375 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 151/382 (39%), Gaps = 23/382 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + + FRN A L D + VG NG GKTN+LEA F++ R FR + Sbjct: 1 MRLRRITLQNFRNIAFADLALDGRLQFLVGANGQGKTNLLEAAGFVTALRSFRTTDARIL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G P G + IKL + + + I + + Sbjct: 61 IRQGQPEAAIACEFEHEHLGSTRLLIKL----RTDGKEVWCDGERISRLADHLGRFPTVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 ++ G RRR+LD + A DP + R + + + + GRN LL + Sbjct: 117 FSSQDQQLVRGAPALRRRWLDLTLSATDPAYLRALQTYHQALAGRNNLLKRQAP-PPQLA 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSL-------TGFLDGK 235 + E +A +++ R I L+ + + + ++L + Sbjct: 176 AFEHPLAAAAAELSAKRTAGIADLAQHVTTAYARIADHAEPTDIALRADNATPSAGEPPP 235 Query: 236 FDQSFCAL-----KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D AL + + R D R TL GPHR DL++ ++ +GS G Sbjct: 236 LDAGCSALDVGRSQRAWLALFEHARARDLQMRTTLTGPHRDDLLLRVGGRS-ARDYGSEG 294 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + + + LA + TG PILL D++ LD +R + + D Q+ TGT Sbjct: 295 QQRCLALALRLAQVEFFRHKTGLEPILLADDVLGELDPARRRRFWTSLGDTR-QVIATGT 353 Query: 351 DKSVFDSLNETAKFMRISNHQA 372 ++ D+ + +++ Sbjct: 354 --TLPDTTLGHWQLYQVTEGAV 373 >gi|149919819|ref|ZP_01908296.1| DNA replication and repair protein RecF [Plesiocystis pacifica SIR-1] gi|149819426|gb|EDM78857.1| DNA replication and repair protein RecF [Plesiocystis pacifica SIR-1] Length = 406 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 86/401 (21%), Positives = 159/401 (39%), Gaps = 34/401 (8%) Query: 5 IKIKFLNISEFRNYASL---------RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++++ L +++FRN+ L F + T+ G NG GKTN+LEA+ S R Sbjct: 1 MELRRLTLADFRNFRGATPEQPGPGVELAFGERFTVLWGHNGAGKTNVLEALYLCSTLRS 60 Query: 56 FRRASYADVTRIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVD 114 FR + R G + GL + ++++ + R +++ ++R Sbjct: 61 FRTTDAKALLRRGQDHARVELEAFDDDLGLDTCLEVRIDRGARSTRRSARVDGKLVRSAT 120 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 + ++ P I G RR+FLDR++FA H + +E+L+R RNR+L Sbjct: 121 DFYGRVQAVLFTPEDLGILRGSPGGRRQFLDRVLFARQRAHIADVQRYEKLLRSRNRVLK 180 Query: 175 EGYFD------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-------- 220 + + + + +AE+G +I R ++ L + Sbjct: 181 TDPAELPRAERTRMLDTYDHGLAEVGAQIWDRRQGLVEDLREPFAAAFAHIHDRRDPGEG 240 Query: 221 --------FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 ++ + ++ A+ L D R+ D + RT +GPH D Sbjct: 241 GAALAAGLAYGARVLTRESQPATAVEDLPGRQQALAQALRDTRRRDEAAGRTTVGPHLDD 300 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 L V D S G+ + +++ +A R G P LLLD++S+ LD + Sbjct: 301 LHVRL-DGVEAGDFASQGQARALVLAFKIAELRDAQQRHGRRPTLLLDDVSSELDPRRSA 359 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF-MRISNHQA 372 LF + Q +T TD + + +++ + Q Sbjct: 360 RLFETLAQEVGQCVLTTTDARYIELGAGVERRDLQVRDGQI 400 >gi|296392443|ref|YP_003657327.1| DNA replication and repair protein RecF [Segniliparus rotundus DSM 44985] gi|296179590|gb|ADG96496.1| DNA replication and repair protein RecF [Segniliparus rotundus DSM 44985] Length = 401 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 150/371 (40%), Gaps = 30/371 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ I +FR++ + D T+F+G NG GKTN++EA+ LS R A A + Sbjct: 1 MRVSSFEIRDFRSWEHAAMRLDEGCTLFLGRNGYGKTNLVEALGVLSSLSSHRGAQNAAM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F + E + +++ L ++ + Q+N V R E+ LR + Sbjct: 61 VRRGAAEAFLSA---EVLNEGRKLTVGLRIAPGKATKA-QLNGVN-RPTREVAGILRTVF 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------E 175 P + G ERRRFLD + PR DFER++R R LL Sbjct: 116 FSPEDLALVRGEPGERRRFLDETLIVRQPRMAGVKADFERVLRQRATLLKSLSGARGAAR 175 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-------------NFP 222 + + + Q A + +AR++++ ALS + + Sbjct: 176 NDEARATLEAWDEQFASRAAALTVARLDLVRALSPRVGRCYAAIDPLSDDAELRYRMSAE 235 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 TG + S + ++L R+ + + L+GPHR DL + A Sbjct: 236 DADQEETGGEAPVGETSEPQVANAVMERLSQLREEELRRGQCLVGPHRDDLELRLAGGAA 295 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 S GE + + +A L+ G P+L+LD++ A LD +R + + Sbjct: 296 RA-FVSHGEAWSYALALRVAAFELLREE-GHDPVLVLDDVFAELDGPRRE-VVAGLAKKA 352 Query: 343 SQIFMTGTDKS 353 Q +T D + Sbjct: 353 EQTLITAADPA 363 >gi|297588054|ref|ZP_06946698.1| recombination protein F [Finegoldia magna ATCC 53516] gi|297574743|gb|EFH93463.1| recombination protein F [Finegoldia magna ATCC 53516] Length = 355 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 81/353 (22%), Positives = 156/353 (44%), Gaps = 13/353 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +RN+ + L F + VG N GKTNILEAI+ G+ F+ + + + Sbjct: 1 MIVQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G +G E DI+IK + + L +N+ + + E N++ Sbjct: 61 IKFGEDEARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYFECI 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180 P +I RR+ LD + +D +R + + +++ RN+L+ ++S Sbjct: 115 VFKPDDLKIVKESKSLRRKLLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNSYFN 174 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 ++ Q+A+ G I R + L + + + KL + ++ + Sbjct: 175 EQLKALNIQLADNGSYIMHKRKSYVERLHLIAKNVCSNLSDENDKLDMENNFSIEYVEDM 234 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 K Y K L D D +++T +G HR DL + DK+ S + + ++ + Sbjct: 235 TNQKNTYYKSLVDILDKDLENKQTNLGIHRDDLDILINDKSAKF-FASQAQVRTAILSMK 293 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 LA L PI+LLD++ + LD+ + N + R + D Q F+T ++++ Sbjct: 294 LAQLDLSRFYNDRLPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSERA 344 >gi|254282777|ref|ZP_04957745.1| DNA replication and repair protein RecF [gamma proteobacterium NOR51-B] gi|219678980|gb|EED35329.1| DNA replication and repair protein RecF [gamma proteobacterium NOR51-B] Length = 357 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 142/371 (38%), Gaps = 17/371 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I RN + + + G NG GKT++LEAI L+ GR FR S V Sbjct: 2 IKQLAIEGVRNL-DASVSLGSSANLLYGRNGSGKTSVLEAIHLLAVGRSFRANSAKPVIG 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 T EG + + ++ D SV +IN + + L + L + + Sbjct: 61 FDRDHCLVTATVTEGN---RNQQLGIQRSKDGSV-IARINGEAVTSLAMLAEVLPVVVMD 116 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 + + G RRRF+D VF ++ F+R +R RN L G + + Sbjct: 117 SGIVSLIDGQPEGRRRFIDASVFHVEQSFLPAWRRFQRALRQRNAGLRRGTLEGD--EAW 174 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 ++A G K+ R ++AL + + + + ++L Sbjct: 175 RREVASAGQKLTEMRSVALDALQARFVASAEALSDDIAGMALVFRAGWDKTVG------- 227 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + L + D + T +GPHR+D+ + D S G+ K+ + LA L Sbjct: 228 LLEALERSLESDRLQGFTHVGPHRADIKL-LIDGRPAAEVMSRGQLKLAATALKLAQGGL 286 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL--NETAKF 364 I+ + P+ L+D++ A LD A+ + G Q+ T D+ + Sbjct: 287 IAQQSRSTPVYLVDDLLAELDSGHSRAVCDQLVAAGGQVVFTAVDRDEVPAFWSGSELTL 346 Query: 365 MRISNHQALCI 375 + + + Sbjct: 347 FHVEQGSVVSV 357 >gi|212550984|ref|YP_002309301.1| DNA replication and repair protein RecF [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|259563354|sp|B6YRR8|RECF_AZOPC RecName: Full=DNA replication and repair protein recF gi|212549222|dbj|BAG83890.1| DNA replication and repair protein RecF [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 366 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 145/375 (38%), Gaps = 20/375 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + I F+N L F + +GDNG+GKTN+L+A+ +L+ + + + + Sbjct: 1 MIIEIVTILNFKNIEEGSLSFSPKINYLLGDNGMGKTNLLDALYYLAFTKNHTNLTDSQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F A + + + +I ++ + + + N + + E + Sbjct: 61 INYN-KDFAVLHAFYKDKDNIEEIYCGIKL---KQRKIFKRNKKEYKKLSEHIGLIPTVM 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSW 182 + P+ + S ERR+F D ++ D + R +I + + ++ RN LL Sbjct: 117 VSPNDTNMIQFGSNERRKFADMLISQYDKEYLRTLIYYNQALQQRNFLLRNALPSLSGEE 176 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E QM G I R L EY + + + L Sbjct: 177 FEIWEEQMGTTGEIIYQKRKNFTTDFLPLFKEYYYTISDKNETIDLEYVSHLDDH----- 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L++ R+ D + T G H+ D + I GS G+ K L+ + LA Sbjct: 232 ---SLFELLYEKRERDKILGFTSTGIHKDDFNFLLNNFLIR-KIGSQGQNKTYLIALKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL--- 358 + PILLLD++ LD + + R++ QIF+T T++ D++ Sbjct: 288 QFSFLVQKGLSIPILLLDDLFDKLDAKRVEKIIRLLAQKTFGQIFITDTNRKHLDNILTK 347 Query: 359 -NETAKFMRISNHQA 372 K +SN Sbjct: 348 MQHAYKLFYVSNGTI 362 >gi|88607598|ref|YP_505900.1| recombination protein F [Anaplasma phagocytophilum HZ] gi|88598661|gb|ABD44131.1| putative DNA replication and repair protein RecF [Anaplasma phagocytophilum HZ] Length = 371 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 109/366 (29%), Positives = 178/366 (48%), Gaps = 6/366 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + + FRNY+ + L + + + +G+NGVGKTNILEA+S LS G G R S + Sbjct: 9 VQVVKLVNFRNYSKVELESNGKSVVLLGENGVGKTNILEAVSLLSKGPGLRNVSADCMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ + + G + I + R + I+ + L+K L I WLV Sbjct: 69 SGTTIPWLVHYNIVGNGEFFSVDIT----KKNNKRSVTID-EKASLYSTLHKILCILWLV 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D I ER RF DRMV D + M+ +E+ R R ++L E + W SS+ Sbjct: 124 PQLDHILLKAPTERLRFFDRMVHIFDKDYSLHMVKYEKAKRDRKKILQESPHNHHWLSSL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E M+ GV I R ++ L + + E+ + F + L + D A+ + Sbjct: 184 EEIMSASGVHIAKIRQHVLETLHATLAEHSSRSTFFKFIIRLESKVFELLDNPDKAV-DA 242 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 YA++L R +D+ + T G H + V K + + STGEQK++L+ + L A Sbjct: 243 YAERLRSNRNIDAARQCTTFGVHNDNFQVFNEKKDLVASSCSTGEQKILLLSLLLTAATA 302 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 G API+LLD+I +HLD R L I+ +G Q+++T D+ F+ E ++ Sbjct: 303 KHKIDGQAPIMLLDDIMSHLDPQHRKELMSIIEHLGCQVWITDVDEKNFEGFRENFQYFH 362 Query: 367 ISNHQA 372 ++N+ Sbjct: 363 VANNNV 368 >gi|167957125|ref|ZP_02544199.1| DNA replication and repair protein RecF [candidate division TM7 single-cell isolate TM7c] Length = 347 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 80/347 (23%), Positives = 151/347 (43%), Gaps = 14/347 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + R++ + T+ +G NG GKT +LEA+ G FR + D+ Sbjct: 1 MDITHLEVRNLRSHELESRDITERVTVIIGKNGSGKTTLLEALYIALRGTSFRGS-DNDI 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + R+ D SI + + S R + D NK + + Sbjct: 60 LQHDKDWW-----RIHVSTTNGDRSIAYDNSGENSPRKKILIDERKFQRMPSNKKIPVVL 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P R+ G RR F+D + I+P + + +ER ++ RN LL + S Sbjct: 115 FEPDDLRVLHGSPSRRRNFIDTFIMHINPHYGTIIRKYERALKQRNTLLKQENASRSNIF 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + MA+ G +I RV +I+ ++ + + Q + + L ++ Sbjct: 175 AWDMAMAQYGAEIISQRVMIISKINQELTKTYQSIAGNNDTVDLHYS-----HTLIDNIQ 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ A L+ + D + T +GPHR D++ ++ + I S GE + +++ + Sbjct: 230 QKLANMLYASFERDKILGFTSVGPHRHDVMFEFNGQ-IAAKVASRGEVRSIILALKFIEV 288 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + TG +P++LLD++ A LDE ++ L D +Q+F+T T+ Sbjct: 289 DITQEATGLSPVILLDDVFAELDETRQRRLAEKCRD--NQMFITSTN 333 >gi|148358142|ref|YP_001249349.1| DNA recombination/repair protein ATPase RecF [Legionella pneumophila str. Corby] gi|148279915|gb|ABQ54003.1| DNA recombination and repair protein ATPase RecF [Legionella pneumophila str. Corby] Length = 353 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 76/369 (20%), Positives = 152/369 (41%), Gaps = 20/369 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + I FRN AS L+ + G NG GKT++LEA+ LS FR A + Sbjct: 1 MILSEVRIHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVAPI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + FA + IS++ D +++N+ +L L Sbjct: 61 ISYGQNQ-LNVFAH---TYDESTISVQKSITDGTQ---IKLNNQFCCTTSQLAYALPCQV 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + +I RR LD +F + + + D++R++ RN LL + Sbjct: 114 IYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHFI- 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+++L +++ AR + + + + +I ++ + + ++ Sbjct: 173 PWDQQLSQLANQLDKARNDYFLQWQPKFYQVLS--DLTNISCTIEYYKGWDRKNAGQNME 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E L D T GPH++DLI++ + S G+QK++L+ + LA Sbjct: 231 E----LLQKSFDSDKNKLYTQYGPHQADLIINIEQYRVKHTL-SRGQQKIILIALKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 +L+ + L+D+++A LD+ + L + +T Q +T + + +D L + Sbjct: 286 QLL----DKDCLYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITNLINNNNYDILPIDSG 341 Query: 364 FMRISNHQA 372 ++ Sbjct: 342 LFEVNCGAI 350 >gi|108802860|ref|YP_642797.1| DNA replication and repair protein RecF [Rubrobacter xylanophilus DSM 9941] gi|108764103|gb|ABG02985.1| DNA replication and repair protein RecF [Rubrobacter xylanophilus DSM 9941] Length = 374 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 22/374 (5%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 I+ + + FRNYA + + VG+N GKTN+LEA++F+ G R + ++V Sbjct: 4 HIRAIRLVNFRNYAGATALLSPGLNVLVGENAQGKTNLLEALAFVVSGSSPRTPNDSEVV 63 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN---KHLRI 122 R G F ARV +++ S + L ++ + + +R Sbjct: 64 RWG-EGFVRVEARVVDGGHERRLAVGY---APGSRKRLTVDGAPVESLARYAAGVAGVRA 119 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFD 179 P R+ G +RR FLD ++ ++ P + R ++ R ++ RN+LL G Sbjct: 120 VTFFPDDLRVVKGSPSDRRSFLDALLSSLRPAYARAAAEYARAVQQRNQLLRRIRDGLSS 179 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 ++ + ++ ELG+ + R L ++ P S Sbjct: 180 ERTLATWDRKVVELGLVLLEGRAAAAAPLDEHFRASMRALYGPQ---------KAAVGYS 230 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 + A E YA+ L + D T +GPHR DL + +T +GS G+Q++ + + Sbjct: 231 YSATPERYAQALREAHSADIERGITSVGPHRDDLRILLEGVDLT-TYGSQGQQRLATLAL 289 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358 A I + TG P+LL D++ + LDE +R+ L + +Q ++ T+ F+ Sbjct: 290 KFAARDYIRDATGQDPVLLFDDVMSELDERRRDYLAGCFLE-STQAVISTTNLRYFEPGA 348 Query: 359 NETAKFMRISNHQA 372 A+ + IS Sbjct: 349 LRRARVLGISGGSI 362 >gi|294010882|ref|YP_003544342.1| DNA replication and repair protein RecF [Sphingobium japonicum UT26S] gi|292674212|dbj|BAI95730.1| DNA replication and repair protein RecF [Sphingobium japonicum UT26S] Length = 356 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 135/368 (36%), Positives = 193/368 (52%), Gaps = 18/368 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L +S+FRN+A ++ D + GDNG GKTNILEA+S L+PGRG R A+ D+ R Sbjct: 2 IGRLTLSDFRNHADALIMPDHSFIVLTGDNGAGKTNILEAVSMLAPGRGLRGAALRDMAR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F A V+G+ + + D R VR V + L HL I WL Sbjct: 62 QDGAGGFGIAAEVDGV--MLGTGVLASAPDRRQVRI----GGVASSANALADHLSIVWLT 115 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185 P+MDR+F RRRFLDR+ A+ P H +E MR RNRLL + D SW S+ Sbjct: 116 PAMDRLFMDSPGGRRRFLDRLTLALHPAHAAHSARYEAAMRARNRLLNDLSAADPSWLSA 175 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 +E QM E G + AR +++ L + +E F L++ G +G+ D+ Sbjct: 176 LETQMDEHGAALAAARADLVGRLQA-ALEDQPDHPFARPLLAIEG--EGEGDEPLGLRLA 232 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++ + TL GPHR DL V + KA A STGEQK +L+ I LAHA Sbjct: 233 RERRRDAAAGR-------TLSGPHRQDLAVVHAAKAQAAALCSTGEQKALLLSILLAHAA 285 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L++ G P+LLLDE++AHLD +R ALF + + GSQ++MTGT+ ++F+ L ++ Sbjct: 286 LVAAHRGQPPVLLLDEVAAHLDPSRRAALFDRLRETGSQVWMTGTESALFNGLPVASR-F 344 Query: 366 RISNHQAL 373 ++ Sbjct: 345 CVTAGHVF 352 >gi|182680050|ref|YP_001834196.1| DNA replication and repair protein RecF [Beijerinckia indica subsp. indica ATCC 9039] gi|182635933|gb|ACB96707.1| DNA replication and repair protein RecF [Beijerinckia indica subsp. indica ATCC 9039] Length = 403 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 136/367 (37%), Positives = 197/367 (53%), Gaps = 3/367 (0%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L +S+FR+Y +L L A+ + G+NG GKTN++EA+S +PGRG RR A R Sbjct: 15 VRRLILSDFRSYPALDLSLGAKMIVVTGENGAGKTNLIEALSLFTPGRGLRRVELASCAR 74 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125 P F+ +E + L R + R +I + HLRI WL Sbjct: 75 AEGPGGFAVSIEIETGAERVQLGTGLVPRSEGGFARQYRIERAPVGSARSFADHLRIVWL 134 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P+ D +F+ ERRRFLDR+V +D H R+ ER +R RNR L + Y DS W + Sbjct: 135 TPAQDGLFAASPGERRRFLDRLVLCVDAEHGARVTVLERALRNRNRQLEDHYADSRWLDA 194 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKF-DQSFCAL 243 E ++AE+ V + ARVE + L LI E FP L + G L+ ++ Sbjct: 195 TEKEIAEIAVAVAAARVETVARLRRLIDESRDTITPFPWADLEIRGDLERLVGERPALEA 254 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E Y L D R+ D+ + R L+GP SDL+V + K A STGEQK +LVG+ LAH Sbjct: 255 EELYRGILRDNRRRDAAAGRALVGPQNSDLLVRHGPKQADAARSSTGEQKALLVGLVLAH 314 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 ARL++ T AP++LLDEI+AH D +R AL+ + + QI+MTG + S F L + A Sbjct: 315 ARLVARATQTAPMILLDEIAAHFDASRRVALYEELAALPGQIWMTGAEASAFSGLADHAD 374 Query: 364 FMRISNH 370 +++ Sbjct: 375 LLQVRPG 381 >gi|54295986|ref|YP_122355.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str. Paris] gi|53749771|emb|CAH11151.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str. Paris] Length = 353 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 76/369 (20%), Positives = 151/369 (40%), Gaps = 20/369 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + I FRN AS L+ + G NG GKT++LEA+ LS FR A + Sbjct: 1 MILSEVRIHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVAPI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + FA + IS++ D +++N+ +L L Sbjct: 61 ISYGQNQ-LNVFAHA---YDESTISVQKSITDGTQ---IKLNNQFCCTTSQLAYALPCQV 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + +I RR LD +F + + + D++R++ RN LL + Sbjct: 114 IYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHFI- 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+++L +++ AR + + + + +I ++ + + ++ Sbjct: 173 PWDQQLSQLANQLDKARNDYFFQWQPKFYQVLS--DLTNISCTVEYYKGWDRKNAGQNIE 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E L D T GPH++DLI+ + S G+QK++L+ + LA Sbjct: 231 E----LLQKSFDSDRNKLYTQYGPHQADLIISIEQYRVKHTL-SRGQQKIILIALKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 +L+ + L+D+++A LD+ + L + +T Q +T + + +D L + Sbjct: 286 QLL----DKDCLYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITNLINNNNYDILPIDSG 341 Query: 364 FMRISNHQA 372 ++ Sbjct: 342 LFEVNCGAI 350 >gi|319785623|ref|YP_004145098.1| DNA replication and repair protein RecF [Pseudoxanthomonas suwonensis 11-1] gi|317464135|gb|ADV25867.1| DNA replication and repair protein RecF [Pseudoxanthomonas suwonensis 11-1] Length = 376 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 11/371 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FR + L + +G NG GKT++LEA+ ++ GR FR + Sbjct: 1 MRVTRLQLRDFRRFHETGLEPGPGVNLILGANGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + + + R +++ + + EL L + Sbjct: 61 VRESAAALEVFVEWEQADAVGVPQLRRAGLRHAGDTWTGRLDGRDVAQLGELCAALAVVT 120 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG + RRRF+D +F ++ + R +R RN LL G + + Sbjct: 121 FDPGSHALISGAADNRRRFMDWGLFHVEQDFLPPWRRYARALRQRNALLKAGGSN-AQLD 179 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++AE G + R + L +++ + + L L G +F + + Sbjct: 180 AWDHELAESGEALTSHREAYLAELEPQVLDTAARLSG---SLHLQGL---EFQPGWRRHE 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 A L GR D T +GPHR+D + Y A S G+ K+ + + LA A Sbjct: 234 VPLADALLLGRDRDRAMGYTGVGPHRADWKLGYVGLPGREAL-SRGQTKLAALAMLLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTD-KSVFDSLNETA 362 R + G P++ LD++ + LD + + + R + D G Q+ +T T+ ++L Sbjct: 293 RDFARRRGHWPVMALDDLPSELDREHQQRVLRFLADQPGVQLLVTATETPPALEALEGLP 352 Query: 363 KF-MRISNHQA 372 F + + Sbjct: 353 MFVFHVEHGAI 363 >gi|229816999|ref|ZP_04447281.1| hypothetical protein BIFANG_02254 [Bifidobacterium angulatum DSM 20098] gi|229785744|gb|EEP21858.1| hypothetical protein BIFANG_02254 [Bifidobacterium angulatum DSM 20098] Length = 384 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 143/371 (38%), Gaps = 15/371 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FR++ + + F + G NG+GKTN++EA+ LS G R S + Sbjct: 1 MYISRLALDHFRSWNQVVVDFTPGVNVLYGANGLGKTNLVEAVEVLSTGGSHRVNSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G A + A+ + T R ++N + + ++ + Sbjct: 61 VERGYGK-----ATIRVNANTAETTTYEVTIAARGANRARVNSGPSQYLRDVVGLVPSVS 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P R+ S RR FL++ + P + R+ F ++ R R LL EG D Sbjct: 116 FTPEDQRLISADPATRRGFLNQSAGMLIPGYTGRLQRFTQIARQRAALLKQLGQHEGSAD 175 Query: 180 SSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + Q E GV + R E++ L++ + + H K + Sbjct: 176 AVLSGLEVWTGQFIEAGVALTRMRNEVMGILATPFSDIYARLASGHGKAEIVYEPSFVEV 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + + ++ + LIGP R D V D S GE + + Sbjct: 236 RDCDTPELNISEHFQRLYPGEVSRGMNLIGPQRDDFSV-LLDGEPARDFASNGEMWTMAL 294 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + +A I+ + G PI++LD++ A LDE +R+ + D Q+ +T S Sbjct: 295 SLKMALFEAIAESRGIRPIVILDDVFAQLDESRRHQILDFAND-QDQVLVTAAAASDIPQ 353 Query: 358 LNETAKFMRIS 368 ++ A + ++ Sbjct: 354 -DDRANIIDVA 363 >gi|289705898|ref|ZP_06502277.1| DNA replication and repair protein RecF [Micrococcus luteus SK58] gi|289557383|gb|EFD50695.1| DNA replication and repair protein RecF [Micrococcus luteus SK58] Length = 404 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 153/380 (40%), Gaps = 24/380 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FR+Y L + T+ +G NGVGKTN++EAI +L + R +S A + Sbjct: 1 MYLSHLTVADFRSYRWADLELTSGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G RV G ++++LE RS R +R + L LR Sbjct: 61 VRFGRDRA-RIAGRVH--RGSRTVALELEILPGRSNRVAINRGAPVRAKEGL-GILRTVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P + +G RRR LD+++ + P D+ER++R RN LL W Sbjct: 117 FAPEDLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSSRGSRRWGP 176 Query: 183 -----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + + + G ++ R+ ++ L+ + E + Sbjct: 177 EEDATLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLA 236 Query: 238 QS-------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + L + + L R+ + TL+GPHR +L + A + S G Sbjct: 237 RGTHAEVPAVADLAADMRRTLESQREEERARSLTLVGPHRDELALFLGP-APARGYASHG 295 Query: 291 EQKVVLVGIFLAHARLISNTTGFA---PILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 E + + + +A ++ P+L+LD++ A LD +R L +V Q+ + Sbjct: 296 ETWSLALALRMAAYDVLVADDPDPDARPVLILDDVFAELDAARRRRLAALV-HRAEQVIV 354 Query: 348 TGTD-KSVFDSLNETAKFMR 366 T + V + L +R Sbjct: 355 TAAALEDVPEELTAHRVLIR 374 >gi|139439855|ref|ZP_01773220.1| Hypothetical protein COLAER_02254 [Collinsella aerofaciens ATCC 25986] gi|133774783|gb|EBA38603.1| Hypothetical protein COLAER_02254 [Collinsella aerofaciens ATCC 25986] Length = 368 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 152/368 (41%), Gaps = 15/368 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+++ +R++ S RL D TI G N GKTN++EA+ L+ G FR + A++ Sbjct: 3 MFARDLSVAHYRSFDSYRLALDEGVTILAGPNAAGKTNLIEALQLLTSGASFRHPTAAEL 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S R+EG + D+ + E R N L Sbjct: 63 VHDGVGSC-KVELRLEGDGRVLDMGLSAED----GKRSFSRNGKRCSAAGV-RGVLPSVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + + RR LD + R+ + R + RN LL E + Sbjct: 117 FCPDHLDMVKRGASVRRAALDDFGMQLSARYADLASTYGRCVTQRNALLKEAWCCREMLG 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSLTGFLD-----GKFDQ 238 + +A G + + R+ +++ L+ + Y Q + +S L ++ Sbjct: 177 AWNDSIARAGAALLVHRLALLDRLAGHVRTAYGQVASGEAANVSYASTLGDLPQVDDREE 236 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 E L + + TL+GPHR ++ ++ + S G+Q+ +++ Sbjct: 237 LKGWAYERMLAALDEHADEEIRRGVTLVGPHRDEIEFAVAGRS-ARSFASQGQQRTLVLA 295 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357 +A + + G AP+LLLD++ + LD ++R A R++ D Q +T T+ F D Sbjct: 296 WKVAEVAVARDVLGTAPLLLLDDVMSELDGERRGAFLRLIGD-DIQTVITTTNLGYFTDD 354 Query: 358 LNETAKFM 365 L + AK + Sbjct: 355 LLDRAKVV 362 >gi|257466632|ref|ZP_05630943.1| RECF protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917786|ref|ZP_07914026.1| DNA replication and repair protein recF [Fusobacterium gonidiaformans ATCC 25563] gi|313691661|gb|EFS28496.1| DNA replication and repair protein recF [Fusobacterium gonidiaformans ATCC 25563] Length = 364 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 77/370 (20%), Positives = 172/370 (46%), Gaps = 14/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + ++ RN + ++ + +F G NG GKT+ILEAI F + G FR +++ Sbjct: 1 MKVLSIQLNHVRNLKNQEIIISSPIQVFYGKNGQGKTSILEAIYFAATGLSFRTKHSSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + + +S+ +E + I + E +L + + Sbjct: 61 IRYTKNTLSCSLG-YQDQFSKKSLSVSIE----NEKKQFFFLGKKISQM-EFYGNLNVIY 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F+DR + I+ + +++ F L++ RN+ L E + + Sbjct: 115 YIPEDVMLINGSPSVRRLFMDREISQINVFYLQQLKKFSHLLKIRNKYLKEKLYQNEEFL 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQSFCA 242 E + E G + R + +SS I Q +L L F++ + D + Sbjct: 175 IYEKEFVECGSYLIEQRNHYLQLMSSFIKNIYQDLFDKEKELQLQYKTFIEFQNDVTLSK 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++EE+ K++ ++ + +++GPH+ + + ++ + S GE+K ++ + L+ Sbjct: 235 IQEEFWKEIKKKKEKEIQYGFSMVGPHKDEF-IFLLERQDAKLYASQGEKKSIIFSLKLS 293 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++S PI+L+D+++++ DE++ +++ + + + Q+F+T T++ L A Sbjct: 294 EIDILSKNKKEMPIVLIDDVTSYFDEERCHSVLQYLYEKKVQVFITSTER-----LKIEA 348 Query: 363 KFMRISNHQA 372 + RI + Sbjct: 349 DYYRIEKGEV 358 >gi|42521081|ref|NP_966996.1| recombination protein F [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410822|gb|AAS14930.1| recF protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 365 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 109/371 (29%), Positives = 174/371 (46%), Gaps = 13/371 (3%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M IK L + FR++++ L D + G NG+GKTNILEAIS L+ G ++A Sbjct: 1 MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60 Query: 61 YADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +++ R + + + GM+ SI + D+ + +QI+ L K Sbjct: 61 ASEIQNRFSNEDWVVHYDFFNGMDFN---SIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + WL+P MD + +R +FLDR+V + + + + R R++LL E D Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 +W SS+E MA V I R ++ L I + E FP L + L + Sbjct: 176 ENWLSSLENIMAVNAVSILRMRSSVLKTLQDTI-DNHSSEFFPKASLKFSSQL------T 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 E + L + R+ DS++ R G H + V + + I STGEQK++L+ I Sbjct: 229 LDDTAEYFQNLLKENREKDSLTGRVTFGVHNDNFRVFCQKRNVPINLCSTGEQKLLLLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L+ + AP+LLLD+I +HLD+ R AL V I Q ++T ++ F+S Sbjct: 289 ILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALMEEVLSIQCQTWITDVNQDNFNSYL 348 Query: 360 ETAKFMRISNH 370 + KF +SN Sbjct: 349 YSFKFFELSNE 359 >gi|225677102|ref|ZP_03788104.1| recombination protein F [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590861|gb|EEH12086.1| recombination protein F [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 365 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 106/371 (28%), Positives = 175/371 (47%), Gaps = 13/371 (3%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M IK L + FR++++ L D + G NG+GKTNILEAIS L+ G ++A Sbjct: 1 MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60 Query: 61 YADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +++ R + + + GM+ SI + D+ + +QI+ L K Sbjct: 61 ASEIQNRFSNEDWIVHYDFFNGMDFN---SIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + WL+P MD + +R +FLDR+V + + + + + R++LL + + Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKYRKAKHERSKLLRKNILN 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 +W SS+E MA V I R ++ L I + E FP L + L + Sbjct: 176 KNWLSSLENIMAVNAVSILRMRSSVLKTLQDTI-DNHSSELFPKASLKFSSQL------T 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 E + +L + R+ DS++ R G H + V + + I STGEQK++L+ I Sbjct: 229 LNDTAEYFQNRLKENREKDSLTGRVTFGVHNDNFRVFCQKRNVPINLCSTGEQKLLLLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L+ + AP+LLLD+I +HLD+ R AL V I Q ++T ++ F+S Sbjct: 289 ILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALMEEVLSIQCQTWITDVNQDNFNSYL 348 Query: 360 ETAKFMRISNH 370 + KF +SN Sbjct: 349 YSFKFFELSNE 359 >gi|220907659|ref|YP_002482970.1| recombination protein F [Cyanothece sp. PCC 7425] gi|254790473|sp|B8HVF7|RECF_CYAP4 RecName: Full=DNA replication and repair protein recF gi|219864270|gb|ACL44609.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7425] Length = 377 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 168/372 (45%), Gaps = 12/372 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRNY + F A TI VG N GK+N+LEA+ LS R R ++ Sbjct: 1 MYLKSLQLRYFRNYREQVIDFAAPKTILVGQNAQGKSNLLEAVELLSTLRSHRSHRDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + A +E G D+++ L + R L +N +R + HL Sbjct: 61 VLSGQENG-QIIATIERDSGPLDLTLNLRSNGR---RTLMVNSEPVRRHLDFLGHLNAVE 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 + G ERR +LD ++ ++P + + + ++R RN L EG D Sbjct: 117 FSSLDLDLVRGTPAERRNWLDNVLIQLEPFYAHLLQQYNHVLRQRNAFLKSYQREGSLDH 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239 + + Q+A G ++ R ++ L+ L + Q + + L + + + Sbjct: 177 TELKLWDQQLASTGTRLTRRRQRLLVRLAPLATHWHQAISGKNEDLQVHYAPNVPLEGDE 236 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 A+ + + +KL + +L+GPHR ++ + ++ +GS G+Q+ +++ + Sbjct: 237 PEAIYQAFLEKLQQKAIAEQHQGTSLVGPHRDEVEL-IINQTPARQYGSQGQQRTLVLAL 295 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358 LA +LI G P+LLLD++ A LD ++N L + D Q +T T FD+ Sbjct: 296 KLAELKLIEEVIGEPPLLLLDDVLAELDLQRQNQLLETIQD-RFQTLITTTHLGAFDAQW 354 Query: 359 NETAKFMRISNH 370 ++A+ + ++ Sbjct: 355 LKSAQILEVAGG 366 >gi|317509429|ref|ZP_07967047.1| DNA replication and repair protein RecF [Segniliparus rugosus ATCC BAA-974] gi|316252258|gb|EFV11710.1| DNA replication and repair protein RecF [Segniliparus rugosus ATCC BAA-974] Length = 411 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 93/393 (23%), Positives = 159/393 (40%), Gaps = 32/393 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ I +FR++ L T+F+G NG GKTN++EA+ LS R A A + Sbjct: 1 MRVSSFEIRDFRSWEHASLRLGEGSTLFLGRNGYGKTNLVEALGVLSSLSSHRGAQTAAM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + + +++ L ++ + QIN V R E+ LR + Sbjct: 61 VRRGAAEALIAA---DVLNEGRKLTVGLRLAPGKATKA-QINGVN-RPTREVAGVLRTVF 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174 P + G ERRRFLD + PR DFER++R R LL Sbjct: 116 FSPEDLALVRGEPGERRRFLDETLVVRQPRMAGVKADFERVLRQRATLLKSLGGGRPGAA 175 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + + + Q A + +AR+ ++ ALS ++ + L G Sbjct: 176 RSEEARATLEAWDEQFASKAAALTVARISLVRALSPIVKRCYAAIDPSVDDAELRYRTAG 235 Query: 235 KFDQSFCALK-------------EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 + D++ A + + KL + R+ + + L GPHR DL + Sbjct: 236 EDDEATAAAEDFPSAEISERHVADSITAKLAEIREEELRRGQCLAGPHRDDLELRIAGG- 294 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + A S GE + + +A L+ G P+L+LD++ A LD +R + + Sbjct: 295 LARAFVSHGEAWSYALALRVAAFELLRGE-GHDPVLVLDDVFAELDGPRREVVAGLARQA 353 Query: 342 GSQIFMTGTDKS-VFDSLNETAKFMRISNHQAL 373 Q +T D + V + L +R+ Q + Sbjct: 354 E-QTLITAADPATVPEGLVARVVPVRLGEAQGM 385 >gi|257062757|ref|YP_003142429.1| recF protein [Slackia heliotrinireducens DSM 20476] gi|256790410|gb|ACV21080.1| recF protein [Slackia heliotrinireducens DSM 20476] Length = 376 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 88/367 (23%), Positives = 155/367 (42%), Gaps = 22/367 (5%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 I+I+ + +FRNY + RL TIF+G NG+GKTN+LEAI L+ FR A + Sbjct: 2 DIRIESFQLRDFRNYETFRLDGIGPLTIFIGPNGIGKTNVLEAIQLLTATPSFRHAHTQE 61 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R + + + + + + D+ I L + + IN D L Sbjct: 62 LIRWDAEN---SLLKAHMVSDVRDLEIGLAIGP--TGKTYSINGKKHSGQDV-QTTLPSV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P + G RR LD + + HR D+ +LM+ +N LL +G + Sbjct: 116 VFSPDDMLLLKGSQSYRRDELDAVGCQLSKNHRILKRDYLKLMKHKNALLKDGVTGP-YI 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL----------- 232 S+ + ++ + RV + +++ + E + +L + Sbjct: 175 ESVNDLIVPTATQLYLYRVALFKNIAARMAEVYATISAGGERLEMRYIPSWHPMEVSKDV 234 Query: 233 --DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 D FD + + L + R L+GPH ++ + ++ +GS G Sbjct: 235 IEDVPFDLGKQEISTRLEEALHQRAVEEYERGRGLVGPHADKIMFYLNGRNASL-YGSQG 293 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +Q+ + + +A LI G P+LLLD++++ LD +R AL ++ Q F+T T Sbjct: 294 QQRSISLAWKIAEVGLIEEILGQKPVLLLDDVASELDAARRGALVELL-HRDIQTFITTT 352 Query: 351 DKSVFDS 357 D F+S Sbjct: 353 DIGTFES 359 >gi|294055474|ref|YP_003549132.1| DNA replication and repair protein RecF [Coraliomargarita akajimensis DSM 45221] gi|293614807|gb|ADE54962.1| DNA replication and repair protein RecF [Coraliomargarita akajimensis DSM 45221] Length = 360 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 88/366 (24%), Positives = 156/366 (42%), Gaps = 14/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ K L + +FRN + L A +G NG GK+N+LEA+ ++ R FR + + Sbjct: 1 MRFKELRVQDFRNVSFAELDLSADRNFLLGPNGQGKSNLLEALGLVTALRSFRTQQMSAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G F+ ++ +LE + R + ++ I + + + Sbjct: 61 PRQGGSGGFAAVYVLQ---HELRGETELEIHSGAAGRRVLLDGEAIGRLGDFIGRFPVVP 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L I G ERRRFLD + AID + + D+ + + RNRLL G D+ + Sbjct: 118 LSSGDLMILRGSPAERRRFLDLSLSAIDADYYLALRDYHKGVAERNRLLKRGGRDAEF-D 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + EA++A V+++ RV + L + ++E ++ + Sbjct: 177 AFEAEIARHAVRLSAKRVSGMARLEATLVEVYAAIAESDEGPAVAYRPGEEL-----GTV 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L RK D + T GPHR D + + S G+Q+ + V + +A A Sbjct: 232 EHFKAMLERNRKRDQVLGSTQKGPHRDDFSLSLSTGGAK-EYASDGQQRGLCVALRIAQA 290 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 +L AP+LL D++ LD ++ +R D Q+ +GT+ + D A+ Sbjct: 291 KLFQQALNVAPVLLADDVLGELDPHRKAGFWRACPD-DWQLIASGTE--LPDGAESWAQ- 346 Query: 365 MRISNH 370 R+ + Sbjct: 347 WRVESG 352 >gi|54292967|ref|YP_125382.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str. Lens] gi|53752799|emb|CAH14233.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str. Lens] Length = 353 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 74/369 (20%), Positives = 149/369 (40%), Gaps = 20/369 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + I FRN AS L+ + G NG GKT++LEA+ LS FR + Sbjct: 1 MILSEVRIHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVTPI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + FA + IS++ D +++N+ +L L Sbjct: 61 ISYGQNQ-LNVFAHA---YDESTISVQKSITDGTQ---IKLNNQFCCTTSQLAYALPCQV 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + +I RR LD +F + + + D++R++ RN LL + Sbjct: 114 IYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHFI- 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+++L +++ AR + + + + I ++ + + ++ Sbjct: 173 PWDQQLSQLANQLDKARNDYFLQWQPKFYQVLS--DLTDISCTVEYYKGWDRKNAGQNME 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E L D T GPH++DLI+ + S G+QK++L+ + LA Sbjct: 231 E----LLQKSFDSDRNKLYTQYGPHQADLIISTEQYRVKHTL-SRGQQKIILIALKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 +L+ + L+D+++A LD+ + L + + + Q +T + + +D L + Sbjct: 286 QLL----DKDCLYLIDDLAAELDDYHQRNLIKYLAQLKGQFVITNLINNNNYDILPIDSG 341 Query: 364 FMRISNHQA 372 ++ Sbjct: 342 LFEVNCGAI 350 >gi|257452988|ref|ZP_05618287.1| RECF protein [Fusobacterium sp. 3_1_5R] gi|317059528|ref|ZP_07924013.1| RECF protein [Fusobacterium sp. 3_1_5R] gi|313685204|gb|EFS22039.1| RECF protein [Fusobacterium sp. 3_1_5R] Length = 364 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 77/370 (20%), Positives = 171/370 (46%), Gaps = 14/370 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + ++ RN + ++ + +F G NG GKT+ILEAI F + G FR +++ Sbjct: 1 MKVLSIQLNHVRNLKNQEIIISSPIQVFYGKNGQGKTSILEAIYFAATGLSFRTKHSSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + + + +S+ +E + I + E +L + + Sbjct: 61 IRYTKNTLSCSLG-YQDQFSKKSLSVSIE----NEKKQFFFLGKKISQM-EFYGNLNVIY 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F+DR + I+ + +++ F L++ RN+ L E + + Sbjct: 115 YIPEDVMLINGSPSVRRLFMDREISQINVFYLQQLKKFSHLLKIRNKYLKEKLYQNEEFL 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQSFCA 242 E + E G + R + +SS I Q +L L F++ + D + Sbjct: 175 IYEKEFVECGSYLIEQRNHYLQLMSSFIKNIYQNLFDKEKELQLQYKTFIEFQNDVTLSK 234 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++EE+ K++ ++ + +++GPH+ + + ++ + S GE+K ++ + L+ Sbjct: 235 IQEEFWKEIKKKKEKEIQYGFSMVGPHKDEF-IFLLERQDAKLYASQGEKKSIIFSLKLS 293 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 ++S PI+L+D+++++ DE++ ++ + + + Q+F+T T++ L A Sbjct: 294 EIDILSKNKKEMPIVLIDDVTSYFDEERCYSVLQYLYEKKVQVFITSTER-----LKIEA 348 Query: 363 KFMRISNHQA 372 + RI + Sbjct: 349 DYYRIEKGEV 358 >gi|315654387|ref|ZP_07907295.1| recombination protein F [Mobiluncus curtisii ATCC 51333] gi|315491422|gb|EFU81039.1| recombination protein F [Mobiluncus curtisii ATCC 51333] Length = 413 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 92/396 (23%), Positives = 159/396 (40%), Gaps = 38/396 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR+Y + L F A +FVG NG GKTN+LEA+++L+ R + A + Sbjct: 1 MFVSDLALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGL 60 Query: 65 TRIG---------SPSFFSTFARVEGMEGLADIS-----IKLETRDDRSVRCLQINDVVI 110 + ARV L D +++E R+ R + IN + Sbjct: 61 IFREIGDTVRSPATSRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNV 119 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 R L HL P ++ G RR FLDR+ + P + ++ ++ R R Sbjct: 120 RPRS-LLGHLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRG 178 Query: 171 RLLT-----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PH 223 L D S + + V++ R +I+ L+ + + + Sbjct: 179 AYLKDVAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPQVYARIAGHPAP 238 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMS---------RRTLIGPHRSDL 273 + L+ + + S +E YA +L +++ L+GPHR +L Sbjct: 239 VGLTYADSVTKTLELSADEQREMYANPELLSSVFRQALARRRADEARRGVNLVGPHRDEL 298 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 + + S GE + + LA L+ P+LLLD++ A LDE +R A Sbjct: 299 ELHLNGLPVK-GFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAA 357 Query: 334 LFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 L + Q+F+T T + ++L A F R++ Sbjct: 358 LLWAIDQAD-QVFITSATGTEIPEAL--HAAFYRVT 390 >gi|58696694|ref|ZP_00372244.1| recF protein [Wolbachia endosymbiont of Drosophila simulans] gi|58698389|ref|ZP_00373302.1| recF protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225630989|ref|YP_002727780.1| recombination protein F [Wolbachia sp. wRi] gi|58535102|gb|EAL59188.1| recF protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58537136|gb|EAL60246.1| recF protein [Wolbachia endosymbiont of Drosophila simulans] gi|225592970|gb|ACN95989.1| recombination protein F [Wolbachia sp. wRi] Length = 365 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 109/371 (29%), Positives = 175/371 (47%), Gaps = 13/371 (3%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M IK L + FR++++ L D + G NG+GKTNILEAIS L+ G ++A Sbjct: 1 MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60 Query: 61 YADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +++ R + + + GM+ SI + D+ + +QI+ L K Sbjct: 61 ASEIQNRFSNEDWVVHYDFFNGMDFN---SIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + WL+P MD + +R +FLDR+V + + + + R R++LL E D Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLD 175 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 +W SS+E MA V I R ++ L I + E FP L + L + Sbjct: 176 KNWLSSLENIMAVNAVSILRMRSSVLKTLQDTI-DNHSGELFPKASLKFSSQL------T 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 E + +L + R+ DS++ R G H + V + + I STGEQK++L+ I Sbjct: 229 LDDTAEYFQNRLKENREKDSLTGRVTFGVHNDNFRVFCQKRNVPINLCSTGEQKLLLLSI 288 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L+ + AP+LLLD+I +HLD+ R AL V I Q ++T ++ F+S Sbjct: 289 ILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALIEEVLSIQCQTWITDVNQDNFNSYL 348 Query: 360 ETAKFMRISNH 370 + KF +SN Sbjct: 349 YSFKFFELSNE 359 >gi|326402805|ref|YP_004282886.1| DNA replication and repair protein RecF [Acidiphilium multivorum AIU301] gi|325049666|dbj|BAJ80004.1| DNA replication and repair protein RecF [Acidiphilium multivorum AIU301] Length = 379 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 116/368 (31%), Positives = 186/368 (50%), Gaps = 9/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ L +++FR+YA L G NG GKTN+LEA+S L+PGRG R A A++ Sbjct: 14 LRIESLRLTDFRSYARLDWQPGGMVVALAGPNGAGKTNLLEAVSLLAPGRGLRGARLAEL 73 Query: 65 TRI--GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G+ ++ AR++G EG I +E R L ++ Sbjct: 74 ARRAPGASGGWAVAARIDGPEGRFAIGTGIEAGQGERRRLL-LDGEPAAAARV-AARFSC 131 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P MDR+F+ + RRRFLDR+V A++P H + FE RNRL+ G +D W Sbjct: 132 LWLTPQMDRLFTEGASARRRFLDRLVLALEPGHASEVAAFEAASANRNRLIEAGGYDPLW 191 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++IE MA + AR+ +I + ++ + FP +LSL + + Sbjct: 192 LATIEDSMARHAAALTAARLHVIER-LNALLAAGAADPFPAARLSLDCPIGAELAHRPAL 250 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EE+ + + + + ++ + P R+DL +++ + A STG+Q+ +LV I LA Sbjct: 251 AVEEWLRGRYAATRAEPVA---ALSPQRADLGLEHASSGLAAALASTGQQRAMLVAIVLA 307 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L++ + G AP+LLLDE HLD R+AL + G+Q+F T T++ +L + A Sbjct: 308 HAALVAISRGAAPVLLLDEPFVHLDAAHRSALGEALHRGGAQVFCTATERDQLAALGDAA 367 Query: 363 KFMRISNH 370 + Sbjct: 368 -IWTVGEG 374 >gi|227876544|ref|ZP_03994655.1| recombination protein F [Mobiluncus mulieris ATCC 35243] gi|227842858|gb|EEJ53056.1| recombination protein F [Mobiluncus mulieris ATCC 35243] Length = 436 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 90/406 (22%), Positives = 154/406 (37%), Gaps = 50/406 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR+Y L + + +F+G NG GKTN++EA+++L+ R + A + Sbjct: 1 MFVTNLALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAAL 60 Query: 65 TRIGSPS----FFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNK 118 G+P ARV S +++E ++ R + +N +R D L Sbjct: 61 IFRGTPEETPHAGIIRARVSPGITPEPRSDLLEIEIVSGKANRAM-LNRHKVRPRD-LVG 118 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175 HL P + SG RR FLDR+ + P D + +R R L + Sbjct: 119 HLSTVLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVAR 178 Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIK----- 225 D + + L K+ +R ++ + L I + + PH Sbjct: 179 RHEVLDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQ-APHESETNPN 237 Query: 226 -------------------LSLTGFLDGKFDQ----SFCALKEEYAKKLFDGRKMDSMSR 262 +S T +D Q L+ + L ++ Sbjct: 238 EATPTAENPVTARMTYRDNVSKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRG 297 Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322 L G HR DL D + + S GE + + LA L+ G AP+LLLD++ Sbjct: 298 VNLCGTHRDDLEFCLHDFPVK-GYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDV 356 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367 A LD +R A+ + Q+++T + + L A+ R+ Sbjct: 357 FAELDSHRRAAILGAIEAAD-QVWITSAVGTELPEDL--HAQVFRV 399 >gi|306817505|ref|ZP_07451249.1| recombination protein F [Mobiluncus mulieris ATCC 35239] gi|304649729|gb|EFM47010.1| recombination protein F [Mobiluncus mulieris ATCC 35239] Length = 436 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 90/406 (22%), Positives = 154/406 (37%), Gaps = 50/406 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR+Y L + + +F+G NG GKTN++EA+++L+ R + A + Sbjct: 1 MFVTNLALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAAL 60 Query: 65 TRIGSPS----FFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNK 118 G+P ARV S +++E ++ R + +N +R D L Sbjct: 61 IFRGNPEETPHAGIIRARVSPGITPEPRSDLLEIEIVSGKANRAM-LNRHKVRPRD-LVG 118 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175 HL P + SG RR FLDR+ + P D + +R R L + Sbjct: 119 HLSTVLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVAR 178 Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIK----- 225 D + + L K+ +R ++ + L I + + PH Sbjct: 179 RHEVLDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQ-APHESETNPN 237 Query: 226 -------------------LSLTGFLDGKFDQ----SFCALKEEYAKKLFDGRKMDSMSR 262 +S T +D Q L+ + L ++ Sbjct: 238 EATPTAENPATARMTYRDNISKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRG 297 Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322 L G HR DL D + + S GE + + LA L+ G AP+LLLD++ Sbjct: 298 VNLCGTHRDDLEFCLHDFPVK-GYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDV 356 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367 A LD +R A+ + Q+++T + + L A+ R+ Sbjct: 357 FAELDSHRRAAILGAIEAAD-QVWITSAVGTELPEDL--HAQVFRV 399 >gi|269217832|ref|ZP_06161686.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon 848 str. F0332] gi|269212767|gb|EEZ79107.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon 848 str. F0332] Length = 453 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 166/392 (42%), Gaps = 41/392 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L +++FR+Y + T+ VG+NG GKTN++EA+ +LS R + A + Sbjct: 1 MYLSDLALTDFRSYERAIVALKPGVTVLVGENGQGKTNLIEAVGYLSTLSSHRVSGDAAL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + ARV + A ++++E R+ R +IN ++R E+ +R Sbjct: 61 VRQGATAA-VVQARV--VRSSAPTTVEVEIYSGRANRA-RINRGLVRPP-EIVGTVRSVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P + SG RR FLDR++ + PR +++R R R LL G Sbjct: 116 FAPEDLELVSGDPAARRSFLDRIMVQLRPRMVAVKSEYDRAARQRAALLKSAGAARRGGG 175 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234 D++ + Q+A+LG +I AR E++ L + E+ K + +++ Sbjct: 176 SADAAALDVWDVQLAKLGARITAARAEIVARLRPRVDEFYAKVSGGRGPAEIAYRASAGR 235 Query: 235 KFDQSFCA-----LKEEYAKKLFDGRKMDSMS--------------RRTLIGPHRSDLIV 275 +++ A E ++L D + L+GPHR +L + Sbjct: 236 LTERANGAGGGPDFDEGTQEELRDVELNEIRLISAMAERREEEIRRGVNLVGPHRDELEL 295 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS-NTTGFA-----PILLLDEISAHLDED 329 + S GE + + LA R++ + +G P+L+LD++ A LD Sbjct: 296 AL-GTLPARGYASHGESWSYALALKLASWRVLCGDESGEWAEGGEPVLILDDVFAELDAR 354 Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 +R+ L RIV + I + L Sbjct: 355 RRDRLARIVEEAEQAIVTAAVGSELPAELGGR 386 >gi|332359507|gb|EGJ37326.1| recombination protein F [Streptococcus sanguinis SK1056] Length = 287 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 7/265 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FRNY + F +F+G N GKTNILEAI FL+ R R S D+ Sbjct: 1 MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTCSDKDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 V G+ + L+ R ++N + + + + + Sbjct: 61 IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNSYLKANDKVDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + ++ Q+ + G ++ R++ + L S + + KL++ + L Sbjct: 176 TVLDEQLVDYGCRVIKHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHK-IDNL 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGP 268 +E Y L + RK D + ++ P Sbjct: 235 EETYRSSLLNSRKRDLFKKIQVLVP 259 >gi|148259598|ref|YP_001233725.1| recombination protein F [Acidiphilium cryptum JF-5] gi|146401279|gb|ABQ29806.1| SMC domain protein [Acidiphilium cryptum JF-5] Length = 379 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 116/368 (31%), Positives = 186/368 (50%), Gaps = 9/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ L +++FR+YA L G NG GKTN+LEA+S L+PGRG R A A++ Sbjct: 14 LRIESLRLTDFRSYARLDWQPGGMVVALAGPNGAGKTNLLEAVSLLAPGRGLRGARLAEL 73 Query: 65 TRI--GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G+ ++ AR++G EG I +E R L ++ Sbjct: 74 ARRAPGASGGWAVAARIDGPEGRFAIGTGIEAGQGERRRLL-LDGEPAAAARV-AARFSC 131 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P MDR+F+ + RRRFLDR+V A++P H + FE RNRL+ G +D W Sbjct: 132 LWLTPQMDRLFTEGASARRRFLDRLVLALEPGHASEVAAFEAASANRNRLIEAGGYDPLW 191 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++IE MA + AR+ +I + ++ + FP +LSL + + Sbjct: 192 LATIEDSMARHAAALTAARLHVIER-LNALLAAGAADPFPAARLSLDCPIGAELAHRPAL 250 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EE+ + + + + ++ + P R+DL +++ + A STG+Q+ +LV I LA Sbjct: 251 AVEEWLRGRYAATRAEPVA---ALSPQRADLGLEHASSGLAAALASTGQQRAMLVAIVLA 307 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 HA L++ + G AP+LLLDE HLD R+AL + G+Q+F T T++ +L + A Sbjct: 308 HAALVAISRGAAPVLLLDEPFVHLDAAHRSALGEALHRGGAQVFCTATERDQLAALGDAA 367 Query: 363 KFMRISNH 370 + Sbjct: 368 -IWTVGEG 374 >gi|312865752|ref|ZP_07725974.1| DNA replication and repair protein RecF [Streptococcus downei F0415] gi|311098627|gb|EFQ56849.1| DNA replication and repair protein RecF [Streptococcus downei F0415] Length = 270 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 118/272 (43%), Gaps = 7/272 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ +++ FRNYA + F + IF+G N GKTN LEAI FL+ R R ++ Sbjct: 1 MWLESISLKNFRNYAQMTAEFSSGLNIFLGQNAQGKTNFLEAIYFLALTRSHRTRLDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + V G+ + LE R ++N + + + H+ + Sbjct: 61 INFQAKDL-----SVSGLLQRRGGKLPLEINLSDKGRTTKVNYLKQTKLSDYIGHMTVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+FLD + I P + + ++ +++ RN L D + Sbjct: 116 FAPEDLQLVKGAPGLRRKFLDIDLGQIKPVYLADLSNYNHVLKQRNAYLKTAQTIDKDYL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + I+ Q+A+ G ++ R + + L+ ++ + L ++ KF S + Sbjct: 176 AVIDEQLADFGSRVMEHRYQFVQDLTQEADKHHHVISNQLEHLKISYQSSVKFQDS-ANI 234 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 K+ + ++L DS + T +GPHR DL Sbjct: 235 KQNFQEQLAKSFSRDSFKKNTGVGPHRDDLAF 266 >gi|225352382|ref|ZP_03743405.1| hypothetical protein BIFPSEUDO_03999 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156889|gb|EEG70258.1| hypothetical protein BIFPSEUDO_03999 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 419 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 135/367 (36%), Gaps = 18/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R++ L F I G NG+GKTNI+EAI LS G R +S + Sbjct: 1 MYISRLALDHYRSWEHCVLDFKPGINILQGANGLGKTNIVEAIEVLSTGSSHRASSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S + A VE E + R R I+ + + +L Sbjct: 61 IEKGCTSA-TIRANVEDGETQHTYEATIVARGANRAR---IDGGKSQYMRDLIGRTPSVS 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG----YFDS 180 P R+ +G RR F+++ + P + + + F + + R LL + D Sbjct: 117 FTPEDQRLVAGDPATRRNFINQAASLLLPHYAQTLQQFTHVAKQRTALLKQLGDGTNLDP 176 Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + Q +LG+++ R +I+ L + +L Sbjct: 177 QYGQQAVLSGLEIWTGQFIDLGMQLTRDRNNVISRLEEPFARIYASLAGDDERAALAYEP 236 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 F E ++ + + LIGPHR DL + D S GE Sbjct: 237 SFDEVMLFDDPAAEISRHFQRIYPGEVARGQNLIGPHRDDLTLLLNDMN-AREFASNGEM 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + +A +S PI++LD++ A LDE +R + Q+ +T Sbjct: 296 WTMALALKMALYEAVSAHFESKPIVILDDVFAQLDEARRGQILDFAMR-QDQVLITVAAA 354 Query: 353 SVFDSLN 359 S ++ Sbjct: 355 SDIPRMD 361 >gi|297564536|ref|YP_003683508.1| DNA replication and repair protein RecF [Meiothermus silvanus DSM 9946] gi|296848985|gb|ADH62000.1| DNA replication and repair protein RecF [Meiothermus silvanus DSM 9946] Length = 347 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 91/349 (26%), Positives = 142/349 (40%), Gaps = 21/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + FRN S T VG N GK+N+LEAI L+ G + +D Sbjct: 1 MRLLRLRQTHFRNLKSPEFAPAPGLTTVVGGNAQGKSNLLEAIY-LALGGELKNG-LSDR 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 G + +A VE GL+ + + L R L +N+ + E + Sbjct: 59 IAFGQTEAW-VYAEVETQFGLSRLENKLSLPRPGTPGGRELWLNETSA-SLKEFAQLPGA 116 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 L P + G RRRFLD ++ R+R + + R ++ RN LL G Sbjct: 117 VLLGPDDLDLVLGPPEGRRRFLDLLLSRFSARYRAVLSAYSRALQQRNALLKMGGKG--- 173 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + A++A+ G +I R M+ LS L E ++ + L L Sbjct: 174 LAVWNAELAKYGTEILSLRRRMLGKLSPLARESYRELAPGELHLELV----------ETT 223 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +E+ L D + D T IGPHR DL + D + S GE + + + + L Sbjct: 224 PPDEFLPALEDTVQQDLERGATSIGPHRDDLAMRL-DGRDALKFASRGEARSIALALRLG 282 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 RL+ AP+LL+DE LD +R AL + Q + G + Sbjct: 283 EHRLLWQHYDEAPLLLVDEWHTELDPRRRGALLSYAQSLP-QAILAGLE 330 >gi|307699932|ref|ZP_07636983.1| putative DNA replication and repair protein RecF [Mobiluncus mulieris FB024-16] gi|307614970|gb|EFN94188.1| putative DNA replication and repair protein RecF [Mobiluncus mulieris FB024-16] Length = 436 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 90/406 (22%), Positives = 153/406 (37%), Gaps = 50/406 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR+Y L + + +F+G NG GKTN++EA+++L+ R + A + Sbjct: 1 MFVTNLALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAAL 60 Query: 65 TRIGSPS----FFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNK 118 G+P ARV S +++E + R + +N +R D L Sbjct: 61 IFRGNPEETPHAGIIRARVSPGITPEPRSDLLEIEIVSGKPNRAM-LNRHKVRPRD-LVG 118 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175 HL P + SG RR FLDR+ + P D + +R R L + Sbjct: 119 HLSTVLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVAR 178 Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIK----- 225 D + + L K+ +R ++ + L I + + PH Sbjct: 179 RHEVLDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQ-APHESETNPN 237 Query: 226 -------------------LSLTGFLDGKFDQ----SFCALKEEYAKKLFDGRKMDSMSR 262 +S T +D Q L+ + L ++ Sbjct: 238 EATPTAENPVTARMTYRDNVSKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRG 297 Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322 L G HR DL D + + S GE + + LA L+ G AP+LLLD++ Sbjct: 298 VNLCGTHRDDLEFCLHDFPVK-GYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDV 356 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367 A LD +R A+ + Q+++T + + L A+ R+ Sbjct: 357 FAELDSHRRAAILGAIEAAD-QVWITSAVGTELPEDL--HAQVFRV 399 >gi|312130769|ref|YP_003998109.1| DNA replication and repair protein recf [Leadbetterella byssophila DSM 17132] gi|311907315|gb|ADQ17756.1| DNA replication and repair protein RecF [Leadbetterella byssophila DSM 17132] Length = 354 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 142/360 (39%), Gaps = 23/360 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + FRNY F VG NG GKTN+L+A+ FL+ + + + Sbjct: 1 MYLQNLRLYNFRNYEERFFTFSPTLNCIVGKNGSGKTNLLDAVYFLALSKSSIQTQDSLS 60 Query: 65 TRIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 R F+ +EG + I I L ++V N V + + + Sbjct: 61 IRFEED-----FSSLEGAFSNQNIIGIHLLRNGKKTVTS---NHKVYEKLSDHIGKYPVV 112 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179 L P+ + RR+ D ++ +DP + + + + + + RN LL + Y D Sbjct: 113 LLAPNDTDYIRDGAETRRKLFDGILSQVDPEYLQTYLKYNKTLDQRNSLLKQFAEQNYVD 172 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S + LG I R I + S L + + ++ + D Sbjct: 173 KDLLSIYTESLLVLGKAIFEKRKSFIESFSPLFKDQYVHLSEGREQVEIQYSSDLW---- 228 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +E + ++ D ++RT +G H+ D + D + GS G++K ++ I Sbjct: 229 ----EENFEEQFQKNLNRDLSAQRTTMGVHKDDFLF-LMDGVLVKKFGSQGQRKSFVMAI 283 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL 358 LA + + PILLLD+I LD+ + L ++ + QIF+T L Sbjct: 284 KLAQFQCLELEKETKPILLLDDIFDKLDDRRILRLIEMMNSGAFGQIFLTDARPERTAEL 343 >gi|15603908|ref|NP_220423.1| recombination protein F [Rickettsia prowazekii str. Madrid E] gi|7388064|sp|Q9ZEB6|RECF_RICPR RecName: Full=DNA replication and repair protein recF gi|3860599|emb|CAA14500.1| RECF PROTEIN (recF) [Rickettsia prowazekii] gi|292571623|gb|ADE29538.1| DNA replication and repair protein RecF [Rickettsia prowazekii Rp22] Length = 360 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 117/361 (32%), Positives = 183/361 (50%), Gaps = 6/361 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + +RN+ +L L D I G+NG GKTNILEAIS PGRG R + D+ + Sbjct: 6 LHSLTLENYRNFKNLELKTDNTPIILTGENGSGKTNILEAISLFYPGRGLRSSKLTDICK 65 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + ++ GLA++S ++ +R R + N I +EL+K + WL Sbjct: 66 T-SEDYCKVKTLLQSKLGLAELSTHIKRSSNR--RITEYNASKI-ANNELSKFTNMVWLT 121 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P M+ IF+ S +RR+FLDR+V+ D +H + +E M RN++L E D++W I Sbjct: 122 PQMEGIFTSSSTDRRKFLDRIVYNFDTKHAALLNKYEYYMHERNKILAEDIRDNNWLKII 181 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA++ I R++ I + I + + FP LS+ G ++ K + Sbjct: 182 EEKMADISNNIANNRLKTIRFIQQAIDDI--ENEFPKADLSIDGIIEQKILNVEGDIVNF 239 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 +L+ R D + RT G H+SD +V + K I STGEQK +L+ I LA Sbjct: 240 IITELYKTRSKDKLLGRTSFGIHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEINS 299 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 T PILLLDEI HLD+ +R L + Q+++T TD ++ A+ ++ Sbjct: 300 TIKLTKITPILLLDEIFVHLDDKRRQYLMGFFNALNIQLWVTATDLDGIENFANKAQLIK 359 Query: 367 I 367 + Sbjct: 360 L 360 >gi|291455695|ref|ZP_06595085.1| RecF protein [Bifidobacterium breve DSM 20213] gi|291382623|gb|EFE90141.1| RecF protein [Bifidobacterium breve DSM 20213] Length = 385 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 73/354 (20%), Positives = 136/354 (38%), Gaps = 15/354 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R+++ + + F I VG NG+GKTN++EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILVGKNGLGKTNLVEAVEVLSTGASHRASSMLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + V+ + R R IN + ++ + Sbjct: 61 IERGQTTATIRANVVDDDGQSTTYEASIHARGANRAR---INSGTSLYLRDIIGRIPSVS 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 P R+ SG RR L++ ++P + + + F R+ + R LL + ++ Sbjct: 118 FTPEDQRLVSGDPGARRTLLNQAGALLEPGYMQSLHQFTRIGKQRATLLKQLGASANTGQ 177 Query: 183 --------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 Q E GV++ R +I+ L+ + +SLT Sbjct: 178 PVDAVLSGLEIWTGQFIEAGVELTRMRARVIDLLAEPFAALYAELTGNDDTVSLTYAPSF 237 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + ++ + LIGP R DL ++ D S GE Sbjct: 238 DEVLMQDDPRLSISEHFQRIYPGEVARGVNLIGPQRDDLTLNLADMP-AREFASNGEMWT 296 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + + + +A ++I G PI++LD++ A LD+++R + Q+ +T Sbjct: 297 MALALKMALFQVIRQRLGLKPIVILDDVFAQLDDNRRTQILDFARR-QDQVLIT 349 >gi|261338544|ref|ZP_05966428.1| RecF protein [Bifidobacterium gallicum DSM 20093] gi|270276565|gb|EFA22419.1| RecF protein [Bifidobacterium gallicum DSM 20093] Length = 381 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 80/368 (21%), Positives = 141/368 (38%), Gaps = 18/368 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + FR++ + L F + T+ G NG+GKTN++EAI LS G R +S + Sbjct: 1 MRITRLALDHFRSWNEVVLDFPSGITMLQGHNGLGKTNLVEAIEVLSTGSSHRTSSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + + A V+ + A + + R IN + ++ + Sbjct: 61 VQRGQQTA-TIRANVQHQDRTATYEATIRAKGANRAR---INSGSSLYLRDIVGQVPSVT 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------- 175 P R+ SG RRRFLD+ + + + + D + + R R LL Sbjct: 117 FSPDDQRLVSGDPSARRRFLDQAGSQLVAGYAQLLQDVQHVGRQRAALLKSLGQHGEPVD 176 Query: 176 ---GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + Q GV + AR +++ L+ + P + LT Sbjct: 177 TVSRNAALASLEVWTGQFISAGVALTRARQQLVQRLAEPFSLVYSQLAGPAEQARLTYEP 236 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + ++ ++ LIGP R DL V S GE Sbjct: 237 SFDEVLTDADPAAALSRHFQRLYAGETSRGVNLIGPQRDDLSVQLNGMD-AHEFASNGEM 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + + + +A RL++ + P+++LD++ A LDE +R + + Q+ MT Sbjct: 296 WAISLALKMALTRLLAEYHAYNPVVILDDVFAQLDESRRGQILSFAAE-QDQVIMTVAAA 354 Query: 353 SVFDSLNE 360 S L Sbjct: 355 SDIPQLAG 362 >gi|269977744|ref|ZP_06184704.1| DNA replication and repair protein RecF [Mobiluncus mulieris 28-1] gi|269934048|gb|EEZ90622.1| DNA replication and repair protein RecF [Mobiluncus mulieris 28-1] Length = 436 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 153/406 (37%), Gaps = 50/406 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR+Y L + + +F+G NG GKTN++EA+++L+ R + A + Sbjct: 1 MFVTNLALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAAL 60 Query: 65 TRIGSPS----FFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNK 118 G+P ARV S +++E + R + +N +R D L Sbjct: 61 IFRGNPEETPHAGIIRARVSPGITPEPRSDLLEIEIVSGKPNRAM-LNRHKVRPRD-LVG 118 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175 HL P + SG RR FLDR+ + P D + +R R L + Sbjct: 119 HLSTVLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVAR 178 Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIK----- 225 D + + L K+ +R ++ + L I + + PH Sbjct: 179 RHEVLDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQ-APHESETNPN 237 Query: 226 -------------------LSLTGFLDGKFDQ----SFCALKEEYAKKLFDGRKMDSMSR 262 +S T +D Q L+ + L ++ Sbjct: 238 EATPTAENPVTARMTYRDNVSKTLGIDASARQIMFADTSVLETQIRAALRSRHLDEARRG 297 Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322 L G HR D+ D + + S GE + + LA L+ G AP+LLLD++ Sbjct: 298 VNLCGTHRDDIEFCLHDFPVK-GYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDV 356 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367 A LD +R A+ + Q+++T + + L A+ R+ Sbjct: 357 FAELDSHRRAAILGAIEAAD-QVWITSAVGTELPEDL--HAQVFRV 399 >gi|329944738|ref|ZP_08292817.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon 170 str. F0386] gi|328529874|gb|EGF56764.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon 170 str. F0386] Length = 405 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 84/407 (20%), Positives = 152/407 (37%), Gaps = 44/407 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y +L L + + FVG NG GKTN++EAI +L+ R + + Sbjct: 1 MYVSDLSLDDFRSYRNLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTAL 60 Query: 65 TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R G R + G +++E ++ R ++N R D L LR Sbjct: 61 VRRAVPGQSQPAGAVVRARAVHGERPSVLEIEIIAGKANRA-RLNRGSCRPRD-LLGVLR 118 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS- 180 P + RR FLD +V + P + ++++ R LL Sbjct: 119 TVVFAPEDLSLVRNEPGVRRGFLDDLVVTLRPGLAGVRAEHDKILAQRASLLKSARAARS 178 Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-----PHIKLSLT 229 S + Q+A ++ ARV+++ L + + + +L+ Sbjct: 179 STASMLSTLEVWDTQLAAAAARLITARVDVVRRLRPWVASAYETVSGSSGERSRAQLAYR 238 Query: 230 GFL---------DGKFDQSFCALKEEYAKKLF----------DGRKMDSMSRRTLIGPHR 270 L D + ++ A +E + + + L+G HR Sbjct: 239 SSLLGHEGSPDPDPHDEAAWLAGEESLLDEAAVTTRLESAMGELHAREIDRGANLVGAHR 298 Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-----PILLLDEISAH 325 DL + S GEQ + + + LA ++ P+L+LD++ A Sbjct: 299 DDLSLFLTGLP-ARGFASHGEQWSLALALRLASYDMLRTDVDAYGGDGEPVLILDDVFAS 357 Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 LDE +R AL R+V + D V L R+++ + Sbjct: 358 LDEQRRRALARMVAGAQQVLLTAAVDDDVPAEL--AGARYRVTDGEV 402 >gi|114565579|ref|YP_752733.1| DNA repair and genetic recombination protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122319237|sp|Q0B0Z2|RECF_SYNWW RecName: Full=DNA replication and repair protein recF gi|114336514|gb|ABI67362.1| DNA replication and repair protein RecF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 365 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 160/369 (43%), Gaps = 13/369 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI I +FRN + IF G+N GKTNILEA+ +L+ G FR + Sbjct: 1 MKILKFQIKDFRNLKKIEYQPSPGLNIFYGENAQGKTNILEALYYLATGNSFRSNKEKTL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S S AR E + D SI + +IN R LRI Sbjct: 61 ISYESSS-LQVQARYNHQERIIDSSITYGLDG----KVFRINKK--RASYNHTDRLRIIL 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G +RR FLD ++ I + ++ ++ ++++ RN LL + +S + Sbjct: 114 FSPDDLYLVKGAPYKRRFFLDFLLGQISNEYLFKLDNYRKILKKRNLLLKKEETNSRSFA 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS---FC 241 I +L ++ I+R+ +IN L I E + N +L + L D Sbjct: 174 IINDIFMDLAAQLLISRLNLINVLDEAIQEIYPQINNDGGQLKIRYALSFPVDSGKINLD 233 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 LK+ K++ + + + TL+GPH D+ + Y ++ + S G+Q+ +++ + L Sbjct: 234 ILKDSLKKQVESETEKEKKRKTTLLGPHLDDMHI-YLNEQMARLFASQGQQRNIVICLKL 292 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A GF PI LLDE+ A LD+ + N L + + Q F+T F+ ++ Sbjct: 293 AEIMTFRKIKGFFPIFLLDEVLAELDDSRSNKLLKYLAQSPFQSFLTSVKLEKFEVMD-- 350 Query: 362 AKFMRISNH 370 A + + Sbjct: 351 ASIFLVKDG 359 >gi|83944866|ref|ZP_00957232.1| recF protein [Oceanicaulis alexandrii HTCC2633] gi|83851648|gb|EAP89503.1| recF protein [Oceanicaulis alexandrii HTCC2633] Length = 388 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 124/376 (32%), Positives = 196/376 (52%), Gaps = 12/376 (3%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 + L ++ FRNYA L L DA+ G+NG GKTN++EA+SFL PGRG R A V Sbjct: 12 AVTRLKLTGFRNYARLDLALDARPVALFGENGAGKTNLVEAVSFLGPGRGLRAAGADAVR 71 Query: 66 R---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G ++ +A EG ++ + ++ + R +++ EL + + + Sbjct: 72 RRTDQGVDPLWAVYAEAMTPEGPVSLATGADPQNP-TRRRTKLDGAAA-TQTELARLIPM 129 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYF 178 WL P DR+++G +R RF DR+V A P H +E+ M+ R RLL G Sbjct: 130 LWLTPREDRLWAGPRADRLRFFDRLVLAAAPDHASSASAYEKSMKERQRLLDRVAEGGRA 189 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D W +++EA+MA GV + AR++ + L I + + FP L+L G ++ K + Sbjct: 190 DPDWLNALEAEMAASGVALAAARLDALARLQDEI-DTRPESQFPKADLALDGAVEAKLAE 248 Query: 239 SFCALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 A + E +A +L R D + R L GPHR++L + K+ + STGEQK ++ Sbjct: 249 GLKAGEAEDWFADELQRVRPRDGAAGRALTGPHRTELDARHRAKSQPASDCSTGEQKSMV 308 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +G+ LA A I +G P+L+ DE AHLD +R+ L V D+G Q FMTG + +F+ Sbjct: 309 LGLALAQAAAIRRLSGRGPVLIFDEACAHLDAARRDGLAETVLDLGVQAFMTGVEPVLFE 368 Query: 357 SLNETAKFMRISNHQA 372 + A+ + + + A Sbjct: 369 AFGTGAQRVEVRDGSA 384 >gi|149200628|ref|ZP_01877631.1| recombination protein F [Lentisphaera araneosa HTCC2155] gi|149136277|gb|EDM24727.1| recombination protein F [Lentisphaera araneosa HTCC2155] Length = 364 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 167/371 (45%), Gaps = 13/371 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + FRNY L L + ++F G NG GKT LEA+ FLS R R + + + Sbjct: 4 ISRIQLKNFRNYPELELKLEPGISVFRGLNGQGKTAFLEALGFLSLLRSIRSSHTRHLKK 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S FFS A ++ ++ + + D R L ++ + + ++ + Sbjct: 64 WESD-FFSLRACLD-RVTRPELDMSVYYGDKRQ---LSLDGNRVPTTSDFIGVVKSVAFM 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P I G + RR++LD ++ + P + + + +++ ++ RN++L G Sbjct: 119 PEDIEIVKGSASWRRQYLDILLSQLSPGYLQSLKHYQKALKSRNQVLKRGLNLDLELDVW 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + + E G ++ AR+ ++ L+ + V+K L L ++ L+ Sbjct: 179 DDILIEHGCEVLEARLSLLPRLAESVSTLVEKMLKKDFLLELQY--KNSLAKNATDLRSV 236 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Y ++L + R+ D + + T GPHR DL+++ ++++ +GS G+ ++ + + A L Sbjct: 237 YIERLLENRERDKLYKMTHQGPHRDDLLINLNGRSLS-NYGSEGQCRLSSLILKAAAVEL 295 Query: 307 ISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE-TAKF 364 + ILL+D++ LDE R A + V+ G Q+F+ TD + L + K Sbjct: 296 LLPVEKPDCLILLIDDVLGELDEFSRRAFLKCVSR-GDQVFIACTD--IPAGLEDYEYKS 352 Query: 365 MRISNHQALCI 375 + + Sbjct: 353 YEVKAGVISSV 363 >gi|88705398|ref|ZP_01103109.1| DNA replication and repair protein recF [Congregibacter litoralis KT71] gi|88700488|gb|EAQ97596.1| DNA replication and repair protein recF [Congregibacter litoralis KT71] Length = 352 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 73/347 (21%), Positives = 127/347 (36%), Gaps = 16/347 (4%) Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89 + G NG GKT++LEA L R FR + G S+ R G I Sbjct: 5 NVIYGVNGSGKTSLLEAAHILGTARSFRSGGAKSLISHGEESYVVRGERRSPTGGSMAIG 64 Query: 90 IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149 ++ E S+R R V L L + + + G RRRFLD VF Sbjct: 65 VQREKAGAISLRLA---GEPSRSVSRLADELPLLLINSDSFDLLVGEPANRRRFLDWGVF 121 Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209 ++ R F+R + RN LL D S +A +++ R + +L Sbjct: 122 HVEHELRDSRQRFQRALTQRNHLLRRAKLDPSELQVWTRDLAVHAERVSSGRERFLESLR 181 Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 + + + ++L S Y + L D T GP Sbjct: 182 EVFEPLIAELAPEIGPVALVYRRGWDASSS-------YEEVLQRSLTSDQEQGFTQTGPQ 234 Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 R+D+ V + S G+QK+++ + LA +++++ G + L+D++ + LD + Sbjct: 235 RADIRVTVGGYSAAETL-SRGQQKLLVCALKLAQGQILASEQG-NVLYLIDDLPSELDAE 292 Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFDS----LNETAKFMRISNHQA 372 + + R + + Q +T +S + + Q Sbjct: 293 RCERVCRTLAAMQVQTLITCVTRSAIPASWLGSESDVAMFHVKQGQV 339 >gi|52840259|ref|YP_094058.1| DNA recombination and repair protein ATPase RecF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627370|gb|AAU26111.1| DNA recombination and repair protein ATPase RecF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 353 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 150/369 (40%), Gaps = 20/369 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + I FRN AS L+ + G NG GKT++LEA+ LS FR + Sbjct: 1 MILSEVRIHNFRNIASTSLILNPNFNCITGPNGGGKTSLLEALYMLSCAHSFRSREITPI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + FA + IS++ D +++N+ +L L Sbjct: 61 ISYGQNQ-LNVFAHA---YDESTISVQKSITDGTQ---IKLNNQFCCTTSQLAYALPCQV 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + +I RR LD +F + + + D++R++ RN LL + Sbjct: 114 IYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYDHFI- 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+++L +++ AR + + + + +I ++ + + ++ Sbjct: 173 PWDQQLSQLANQLDKARNDYFLQWQPKFYQVLS--DLTNISCTVEYYKGWDRKNAGQNME 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E L D T GPH++DLI+ + S G+QK++L+ + LA Sbjct: 231 E----LLQKSFDSDRKKLYTQYGPHQADLIISTEQYRVKHTL-SRGQQKIILIALKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363 +L+ + L+D+++A LD+ + L + +T Q +T + + +D L + Sbjct: 286 QLL----DKDCLYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITNLINNNNYDILPIDSG 341 Query: 364 FMRISNHQA 372 ++ Sbjct: 342 LFEVNCGAI 350 >gi|269122839|ref|YP_003305416.1| DNA replication and repair protein RecF [Streptobacillus moniliformis DSM 12112] gi|268314165|gb|ACZ00539.1| DNA replication and repair protein RecF [Streptobacillus moniliformis DSM 12112] Length = 358 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 78/366 (21%), Positives = 148/366 (40%), Gaps = 17/366 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + S FRN R+ + G+N GKT+ +EAI F + GR FR ++ + Sbjct: 2 IKEIFFSGFRNLIDKRIKLSRGFNLIYGENAQGKTSFMEAIYFGATGRSFRTKKNNEMIK 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S F +++ ++ SI L + + + N I+ VD + L +S++ Sbjct: 62 YDSNDA-KIFVKLDN---TSNYSINLFKNEKKYFK----NGEKIKYVDYIGDILAVSFI- 112 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + G RR F + + I+ + ++D+E++++ RN++L + Sbjct: 113 PEDVELVMGNPSIRRGFFNYEISQINKEYLHLIVDYEKILKVRNKMLKDKKHKEELYLIY 172 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFCALK 244 + ++ KI R E ++ L+ + + + KL FL K Sbjct: 173 NEKYIDICAKILKIRKEYVDELNKYLDKNYKDLFNIEHNFKLIYENFLKIDDVSDIEENK 232 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + K L D + G H+ + I + K + S GE+K ++ + ++ Sbjct: 233 KIIEKLLKSKEIYDIQVGYSNYGVHKDEYIFELNGKN-ARHYSSQGEKKSIVFILKISEI 291 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 LI PI L+D+I++ D ++N + + Q F+T T+ L K Sbjct: 292 ELIEKKENKKPIFLMDDITSFFDNFRKNQIIHYFLEKEIQCFLTSTE-----DLKIVGKK 346 Query: 365 MRISNH 370 + Sbjct: 347 FDVDRG 352 >gi|306823994|ref|ZP_07457368.1| recombination protein F [Bifidobacterium dentium ATCC 27679] gi|309801974|ref|ZP_07696088.1| DNA replication and repair protein RecF [Bifidobacterium dentium JCVIHMP022] gi|304552992|gb|EFM40905.1| recombination protein F [Bifidobacterium dentium ATCC 27679] gi|308221422|gb|EFO77720.1| DNA replication and repair protein RecF [Bifidobacterium dentium JCVIHMP022] Length = 396 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 77/356 (21%), Positives = 131/356 (36%), Gaps = 18/356 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R++ L F+ I G NG+GKTNI+EA+ LS G R +S + Sbjct: 1 MHISRLALDHYRSWERCVLDFEPGVNILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S + A VE + + R R N + +R ++ + Sbjct: 61 IERGCASA-TIRANVEDDRNRHSYEVTIAARGANRARIDGGNSLYMR---DVIGKIPSVS 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P R+ SG RR F+++ + P + R+ F + + R LL G FD Sbjct: 117 FTPEDQRLVSGDPATRRNFINQAGALLIPHYMERLQQFTHVAKQRTALLKQLGDRGDFDP 176 Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + Q ++G+ + R +I LS + L Sbjct: 177 QYGRQAALSGLEIWTGQFIDIGMALTHDRATLIERLSEPFSRVYASLAGTDQQALLRYEP 236 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + E ++ + + LIGPHR DL + S GE Sbjct: 237 SFDEVMLYDDPAAEISRHFQRIYPGEVARGQNLIGPHRDDLTLTLHGMP-AREFASNGEM 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + + + +A + PI++LD++ A LDE +R + Q+ +T Sbjct: 296 WTMALALKMALYETVCADQQTKPIVILDDVFAQLDESRREQILDFARR-QDQVLIT 350 >gi|225621318|ref|YP_002722576.1| putative recombinational DNA repair ATPase [Brachyspira hyodysenteriae WA1] gi|225216138|gb|ACN84872.1| putative recombinational DNA repair ATPase (RecF pathway) [Brachyspira hyodysenteriae WA1] Length = 355 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 151/368 (41%), Gaps = 13/368 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRNY F + + G NG GKTNILEAI L G FR ++ Sbjct: 1 MILKELTLRSFRNYNENIFEFSDKINVLYGHNGCGKTNILEAIYMLGNGVSFRTRLDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ ++F E + +E + ++ + I+ + +L + Sbjct: 61 VKNGNDNYFLRGVF---REDELNYDTNIEIAYQKKIKKVFIDKKEVSSRKDLIGRILYVI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P+ + RR + + ++ I + +I + +L++ RN L + Sbjct: 118 FLPNDTDLVIAEPKLRRDYFNMLISTISSEYLIALIKYNKLLKMRNICL---NTKPNEAY 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + +A+L + I + L + E + ++ + + Sbjct: 175 IYNSDIAKLSLYIANENKKYSALLEEKMNEIYKNIFNDENPYAIKYQSTIED----ILNE 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EY KKL + T G HR++ Y + +++ S GE+++ + + LA Sbjct: 231 NEYIKKLETTLQEQIRMHTTYFGIHRAEYQFFYKN-SLSKKFSSQGEKRMFTLIMKLASE 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 +++S +PILL+D+ LD +R+ + + +G Q+F+T T+K + E K Sbjct: 290 KILSEYRKKSPILLIDDAMLELDNTRRDNILEYIKTLG-QVFITVTEKEKVKNF-ENGKV 347 Query: 365 MRISNHQA 372 I N + Sbjct: 348 FDIPNIRV 355 >gi|300871522|ref|YP_003786395.1| DNA replication and repair protein RecF [Brachyspira pilosicoli 95/1000] gi|300689223|gb|ADK31894.1| DNA replication and repair protein, RecF [Brachyspira pilosicoli 95/1000] Length = 355 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 151/365 (41%), Gaps = 13/365 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + FRNY F I G NG GKTNILEAI L G FR ++ Sbjct: 1 MILKELTLRSFRNYNENTFEFSKHINILYGINGCGKTNILEAIYILGNGISFRTRLDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ ++F E + +E + + + IN I L + Sbjct: 61 IKYGNDNYFLRGIFKEDD---LNYDTNIEIVYQKKTKKVFINKKEITSRKNLIGKILYVI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P+ + + RR + + ++ +I + +I + +L++ RN LT D+ Sbjct: 118 FLPNDTDMVTSEPKLRRDYFNMLISSISNEYLLSLIKYNKLLKMRNIYLTTSPNDAH--- 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +A+L + I + L + E + + + A + Sbjct: 175 IYNEDIAKLSLYIANENKKYSMLLEEKMNEIYRTIFKNDNPYKIKYLSTIED----IANE 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EY KKL K R T G HR++ Y D +++ S GE++++ + + LA Sbjct: 231 NEYIKKLESTIKEQIKMRTTYFGIHRAEYQFFYKD-SLSRKFSSQGEKRMLTLIMKLASE 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 +++ +PILL+D+ LD KR ++ + +G Q+F+T T+K E +K Sbjct: 290 KILYEYRKKSPILLIDDAMLELDNIKRESILEYIKTLG-QVFITVTEKEKLSKFEE-SKV 347 Query: 365 MRISN 369 I N Sbjct: 348 FDIVN 352 >gi|229496502|ref|ZP_04390216.1| RecF protein [Porphyromonas endodontalis ATCC 35406] gi|229316399|gb|EEN82318.1| RecF protein [Porphyromonas endodontalis ATCC 35406] Length = 372 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 159/373 (42%), Gaps = 13/373 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + F++ A+ F + F G NG+GKTN+L+AI +LS R Sbjct: 1 MVLEHLELVAFKSIATASCDFAPKLNCFFGGNGMGKTNLLDAIHYLSMARSHLNTVDRLA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 RIGS EG I L R + L N + + + E + Sbjct: 61 IRIGSTEAI-LSGDYRANEGEETDRIALRLRMG-QAKALSRNGRLYKRLSEHIGRYPLVI 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P R+ G S ERR +LDR++ D + +I ++R ++ RN LL + D S Sbjct: 119 ISPQDYRLIRGGSDERRNWLDRLLSQHDALYLDLLIRYDRALQQRNTLLKSDFQDEMLLS 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +E QMA GV+I R E + + + Q+ + +L + + Sbjct: 179 IVEEQMALTGVEIAQKRAEFVRDFTPTFNQLYQEICGDKSECVTLNYL-----TATAPNR 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + + L R+ + + T G H+ DL + + + GS G+ K L + Sbjct: 234 ELFTQDLRQRRREERATGYTTYGIHKDDLEM-LLGENLMRKIGSEGQNKTFLTALKFTEY 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSL----N 359 L++N PILLLD++ LD ++ + IV+ I QIF+T T++ D + + Sbjct: 293 NLLANKLQCRPILLLDDLFDKLDAERVERIIGIVSRPIFGQIFITDTNRKYLDDIIEAQH 352 Query: 360 ETAKFMRISNHQA 372 E+ + + Sbjct: 353 ESFHLYAVDHGNI 365 >gi|182414266|ref|YP_001819332.1| DNA replication and repair protein RecF [Opitutus terrae PB90-1] gi|259563666|sp|B1ZSD3|RECF_OPITP RecName: Full=DNA replication and repair protein recF gi|177841480|gb|ACB75732.1| DNA replication and repair protein RecF [Opitutus terrae PB90-1] Length = 366 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 146/367 (39%), Gaps = 11/367 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L + FRN L F + VG NG GKTN+LEA FL+ R FR + Sbjct: 1 MRLRHLTLRHFRNVGFAALAFSGRQQFLVGLNGQGKTNLLEAAGFLTALRSFRTTDNKLL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + + G ++IKL R + L + + + + Sbjct: 61 IQHGQHTGAISSELTHEQLGDTKLTIKL----RRDGKELWSDATRVTRLADHLGRFPTVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + G RRR+LD + ++D + R + + R + RN LL G + Sbjct: 117 FSSQDLHLVRGAPALRRRWLDLTLASMDAGYLRALQTYSRALADRNALLKRGNAADAELD 176 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + E Q+A V + R + L + + + + + FD Sbjct: 177 AFEQQLAPAAVALLATRTAALALLGAKLAVAYDRLCAGDAAEKVGLHYEPSFDGPST--- 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + + R D+ R TL+GPHR D S G+Q+ +++ + LA A Sbjct: 234 EAWLARFESSRGRDAQFRTTLVGPHRDDFSFVVRG-TAAKDFASEGQQRSLVLALRLAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 +G P+LL D++ LD +R + + D SQI TGT S+ D+ + Sbjct: 293 EWGHEKSGTRPVLLADDVLGELDPLRRRRFWASI-DPESQILATGT--SLPDAELGEWQV 349 Query: 365 MRISNHQ 371 + + + Sbjct: 350 FEVKSGE 356 >gi|166157052|emb|CAO79509.1| DNA replication and repair protein RecF [uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11] Length = 352 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 92/359 (25%), Positives = 168/359 (46%), Gaps = 22/359 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L ++ RN+ L L+FD T+ GDNG GK+ ILEAI LS G+ D+ Sbjct: 1 MKILNLKLTNLRNHTKLSLIFDNNVTLITGDNGSGKSTILEAIHILSVGKSKISKYDRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKL---ETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + G F S A +E + ++ +++ E ++ S++ +IN V + + Sbjct: 61 IQYGKK-FCSINADIETKDDRFNMELQIIKNEDFENASIKKARIN-KVAKSIQYFAGIFN 118 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYF 178 P ++ +G ERR+++D + +D ++R + D+ + +R RN+LL +G+ Sbjct: 119 SVLFSPQDIQLITGSPSERRKYVDETLSQVDIEYKRSLNDYLKAVRQRNKLLEKINQGFG 178 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 QM + G I R +M + +++E + N KL L + Sbjct: 179 GQGEIEFYTHQMLKNGEIIQRKREQMFADIKPILLETGKILNDKKTKLELNYKKN----- 233 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 E ++L + + + + +L+GPHR D + + D +T GS GEQ+ ++ Sbjct: 234 ------EISIERLNEFKSREIAAMTSLLGPHRDDFEIHFNDHNVT-NFGSRGEQRSCVLS 286 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + +A I P+LLLD+I + LD+ + A+F ++ +Q +T T F + Sbjct: 287 LKIAEISFIEKKKNDKPVLLLDDIFSELDKKHQTAVFDVIN--RNQTTITSTSMPDFPN 343 >gi|183980038|ref|YP_001848329.1| DNA replication and repair protein RecF [Mycobacterium marinum M] gi|226737814|sp|B2HI48|RECF_MYCMM RecName: Full=DNA replication and repair protein recF gi|183173364|gb|ACC38474.1| DNA replication and repair protein RecF [Mycobacterium marinum M] Length = 385 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 148/368 (40%), Gaps = 22/368 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A L T+FVG NG GKTNI+EA+ + + R + A + Sbjct: 1 MYVRHLGLRDFRSWAHADLELGPGRTVFVGPNGFGKTNIIEALWYSATLGSHRVGTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + ++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGADRAVISTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P + G +RRR+LD + P D+++++R R LL Sbjct: 117 FAPEDLALVRGDPADRRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKSVSGARFRGD 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--- 233 ++++A+ G ++ AR++++ L+ + + Q ++ Sbjct: 177 RGALDTLDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAYRASMDA 236 Query: 234 ----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 L+E L R + L+GPHR DL + D+ S Sbjct: 237 FVAADDAAPDRVTLEEGLLAALAARRDAELERGVCLVGPHRDDLELRLGDQPAK-GFASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + V A + G P+LLLD++ A LD +R AL R V + Q+ +T Sbjct: 296 GESWSMAVA-LRLAAFALLRADGSEPVLLLDDVFAELDAARRTALAR-VAESAEQVLVTA 353 Query: 350 TDKSVFDS 357 S Sbjct: 354 AVLEDIPS 361 >gi|296125983|ref|YP_003633235.1| DNA replication and repair protein RecF [Brachyspira murdochii DSM 12563] gi|296017799|gb|ADG71036.1| DNA replication and repair protein RecF [Brachyspira murdochii DSM 12563] Length = 355 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 157/370 (42%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L I FRNY F + + G NG GKTNILEA+ L G FR ++ Sbjct: 1 MILKELTIRSFRNYNENVFEFSDKINVLYGHNGCGKTNILEAVYMLGNGVSFRTRLDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ ++F E + +E + V+ + I+ + +L + Sbjct: 61 VKNGNDNYFLRGVF---REDELNYDTNIEIAYQKKVKKVFIDKKEVSSRKDLIGRILYVI 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P+ + RR + + ++ I + +I + +L++ RN L+ ++ Sbjct: 118 FLPNDTDLVIAEPKLRRDYFNMLISTISLEYLTALIKYNKLLKMRNVCLSTKPNEAY--- 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFCA 242 + +A+L + I + + L + E + + ++ F+++ Sbjct: 175 IYNSDIAKLSIYIAGENKKYSSILEDKMNEIYKNIFNDENPYAIKYQSTIEDIFNEN--- 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EY KKL R T G HR++ Y + +++ S GE+++ + + LA Sbjct: 232 ---EYVKKLESTLNEQIRMRTTYFGIHRAEYQFFYKE-SLSKKFSSQGEKRMFTLIMKLA 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 +++S +PILL+D+ LD +R+ + + +G Q+F+T T+K + E Sbjct: 288 SEKILSEYRRKSPILLIDDAMLELDNTRRDNILEYIKTLG-QVFITVTEKEKVKNF-ENG 345 Query: 363 KFMRISNHQA 372 K I N + Sbjct: 346 KVFDIPNIRV 355 >gi|312134085|ref|YP_004001423.1| DNA replication and repair protein recf [Caldicellulosiruptor owensensis OL] gi|311774136|gb|ADQ03623.1| DNA replication and repair protein RecF [Caldicellulosiruptor owensensis OL] Length = 353 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 140/349 (40%), Gaps = 21/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + I FR+Y F + + VG+N GKT++LEA+ F G+ F+ + D+ Sbjct: 1 MIIKGIYIENFRSYKQSFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFK-SRDIDL 59 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 S F A VEG+E + D + + IND + + EL + Sbjct: 60 INFDSQYFKLEMVAEVEGVEYAVGCYV-----DRILEKRIMINDKKVNRLSELITLFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RRRFLD V + P + +++R + RN L Y Sbjct: 115 FFEPDTTELVKHQPKLRRRFLDMEVAKLYPYMTKVYQEYQRALLSRNAFLK-SYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q++ LG I R E+I LSS L L + Sbjct: 174 DVYDVQLSHLGFLILSKRQEIIKKLSSEAQRIFGHVFENKSVLELEYLPSIA-----ASS 228 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +EEY +L D T G HR D + K + S G+ K+ V + LA Sbjct: 229 EEEYYTELKRWSDKDLNLGYTTRGIHRDDFEILIDGKP-ALDFASEGQIKLAAVSVVLAS 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 A L P+L+LD++ + LD K+ L + ++ Q F+T + Sbjct: 288 AALY-----EKPVLILDDVFSELDSQKKKNLIKFLSQY--QSFVTSAED 329 >gi|171741732|ref|ZP_02917539.1| hypothetical protein BIFDEN_00823 [Bifidobacterium dentium ATCC 27678] gi|283454962|ref|YP_003359526.1| Recombinational DNA repair ATPase RecF [Bifidobacterium dentium Bd1] gi|171277346|gb|EDT45007.1| hypothetical protein BIFDEN_00823 [Bifidobacterium dentium ATCC 27678] gi|283101596|gb|ADB08702.1| Recombinational DNA repair ATPase RecF [Bifidobacterium dentium Bd1] Length = 396 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 77/356 (21%), Positives = 131/356 (36%), Gaps = 18/356 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R++ L F+ I G NG+GKTNI+EA+ LS G R +S + Sbjct: 1 MYISRLALDHYRSWERCVLDFEPGVNILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G S + A VE + + R R N + +R ++ + Sbjct: 61 IERGCASA-TIRANVEDDRNRHSYEVTIAARGANRARIDGGNSLYMR---DVIGKIPSVS 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180 P R+ SG RR F+++ + P + R+ F + + R LL G FD Sbjct: 117 FTPEDQRLVSGDPATRRNFINQAGALLIPHYMERLQQFTHVAKQRTALLKQLGDRGDFDP 176 Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + Q ++G+ + R +I LS + L Sbjct: 177 QYGRQAALSGLEIWTGQFIDIGMALTHDRATLIERLSEPFSRVYASLAGIDQQALLHYEP 236 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + E ++ + + LIGPHR DL + S GE Sbjct: 237 SFDEVMLYDDPAAEISRHFQRIYPGEVARGQNLIGPHRDDLTLTLHGMP-AREFASNGEM 295 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 + + + +A + PI++LD++ A LDE +R + Q+ +T Sbjct: 296 WTMALALKMALYETVCADQQTKPIVILDDVFAQLDESRREQILDFARR-QDQVLIT 350 >gi|270158400|ref|ZP_06187057.1| DNA replication and repair protein RecF [Legionella longbeachae D-4968] gi|289163356|ref|YP_003453494.1| RecF recombinational DNA repair ATPase [Legionella longbeachae NSW150] gi|269990425|gb|EEZ96679.1| DNA replication and repair protein RecF [Legionella longbeachae D-4968] gi|288856529|emb|CBJ10324.1| RecF recombinational DNA repair ATPase [Legionella longbeachae NSW150] Length = 356 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 150/359 (41%), Gaps = 21/359 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I + RN S L + + G NG GKT++LEA LS G FR A + Sbjct: 1 MILTELKIHQLRNIISAHLELNPRFNFIFGSNGSGKTSVLEAFYLLSCGHSFRTREIAPI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 PS + FAR E ISI+ V+ +N+ +L L Sbjct: 61 ISHNQPS-MTVFARGRNQE---TISIQKSYSGATQVK---LNNQFCSTTSQLAYALPCQV 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + +I RR LD +F + + +++R+++ RN LL + + + Sbjct: 114 FYSDLFQIIDAGPSVRRNLLDWGLFHVKHNYFNLWKEYKRVLKQRNALLKKRAPFTHYI- 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+ +L ++++ R E + + + + + +L + +L+ Sbjct: 173 PWDKQLDQLANQLHLLREEYFIQWEREFISVLSELS--ELGCTLKYYKGWDKKNLGKSLE 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E L + D T G H++D I++ + + S G+QK++L+ + LA A Sbjct: 231 E----VLAENFDSDCHKLYTQHGAHQADFIIEVDNNKVK-HFISRGQQKIILIALKLAQA 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS--VFDSLNET 361 L+S + L+D+++A LDE + + + Q +T T S +F++ + Sbjct: 286 NLVSE----DCLYLMDDLAAELDEAHQRRIMSHLFTRNGQYIITSTSNSNVLFENFSNN 340 >gi|302870735|ref|YP_003839371.1| DNA replication and repair protein RecF [Caldicellulosiruptor obsidiansis OB47] gi|302573594|gb|ADL41385.1| DNA replication and repair protein RecF [Caldicellulosiruptor obsidiansis OB47] Length = 353 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 136/349 (38%), Gaps = 21/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + I FR+Y F + + VG+N GKT++LEA+ F G+ F+ + D+ Sbjct: 1 MIIKSIYIENFRSYHQSFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFK-SRDVDL 59 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 S F A V G+E + + + IND + + EL + Sbjct: 60 INFDSQYFKLEMVAEVSGVEYAVGCYVDRML-----EKGIMINDKKVNRLSELITLFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RRRFLD V + P + ++++ + RN L Y Sbjct: 115 FFEPDTTELVKRQPKLRRRFLDMEVAKLYPYMTKVYQEYQKALLSRNAFLK-SYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q++ LG I R E+I LS L L + Sbjct: 174 DVYDVQLSHLGFLILSKRQEVIKKLSGEAQRIFGHVFENKSLLELEYLPSIA-----ASS 228 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +EEY +L D T G HR D + K + S G+ K+ V + LA Sbjct: 229 EEEYYTELKRCLIKDLNFGYTTRGVHRDDFEILIDGKP-ALDFASEGQIKLAAVSVVLAS 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 A L P+L+LD++ + LD KR L ++ Q F+T + Sbjct: 288 AALY-----EKPVLILDDVFSELDCQKRKNLVMFLSQY--QSFVTSAED 329 >gi|307608753|emb|CBW98135.1| RecF recombinational DNA repair ATPase [Legionella pneumophila 130b] Length = 353 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 73/344 (21%), Positives = 142/344 (41%), Gaps = 19/344 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + I FRN AS L+ + G NG GKT++LEA+ LS FR + Sbjct: 1 MILSEVRIHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVTPI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + FA + IS++ D +++N+ +L L Sbjct: 61 ISYGQNQ-LNVFAHA---YDESTISVQKSITDGTQ---IKLNNQFCCTTSQLAYALPCQV 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + +I RR LD +F + + + D++R++ RN LL + Sbjct: 114 IYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHFI- 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+++L +++ AR + + + + +I ++ + + ++ Sbjct: 173 PWDQQLSQLANQLDKARNDYFLQWQPKFYQVLS--DLTNISCTIEYYKGWDRKNAGQNIE 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E L D T GPH++DLI++ + S G+QK++L+ + LA Sbjct: 231 E----LLQKSFDSDKNKLYTQYGPHQADLIINIEQYRVKHTL-SRGQQKIILIALKLAQG 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 +L+ + L+D+++A LD+ + L +T Q +T Sbjct: 286 QLL----DKDCLYLIDDLAAELDDYHQRNLIMHLTQQKGQFVIT 325 >gi|308234057|ref|ZP_07664794.1| DNA replication and repair protein RecF [Atopobium vaginae DSM 15829] gi|328943454|ref|ZP_08240919.1| recombination protein F [Atopobium vaginae DSM 15829] gi|327491423|gb|EGF23197.1| recombination protein F [Atopobium vaginae DSM 15829] Length = 382 Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 152/385 (39%), Gaps = 28/385 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + +RN+ LR+ + T+ G N VGKTN +EA+ ++ G FR+ + Sbjct: 5 LHELTCTNWRNFQHLRISLGDKTTVLHGSNAVGKTNTIEAVQMITTGTSFRKPLLTQMIY 64 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + AR+ + S++L + ND V L + Sbjct: 65 HNENA-----ARLCAVYEDELHSVELACNISTHSKTYLKNDKKC-SVSTLCSVMPSVLFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + RR +D +R+ + F R + RN +L DS + Sbjct: 119 PDDLLFVKQTARYRRSEIDGFGILAHKGYRKLIKTFSRALEQRNNILKLPLSDSDILHAW 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGF------LDGKFDQS 239 +A + AR+++IN L S E + +++ L+ K ++ Sbjct: 179 SVSLAHGSASVVAARLKLINHLYSKACEVYHTISPAEQLEIKYKSSIPLIKDLEHKVEEP 238 Query: 240 F------------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 + L + Y + + + TLIGP R D+ Y + + Sbjct: 239 YMYTPQSLSSLSKEDLVQSYLDAFSQKEQEELRRQVTLIGPQRDDIEF-YINGIPARTYA 297 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S G+Q+ +++ LA I TG PILLLD++ + LDE +R A+ + G Q + Sbjct: 298 SQGQQRSIVLAWKLAEVLFIKELTGQNPILLLDDVMSELDETRRLAIMEFIQQ-GIQTII 356 Query: 348 TGTDKSVF-DSLNETAKFMRISNHQ 371 T T+ S F + + A+ + ++ Q Sbjct: 357 TTTNLSYFTKDILDRAQVVNMNEKQ 381 >gi|269954814|ref|YP_003324603.1| DNA replication and repair protein RecF [Xylanimonas cellulosilytica DSM 15894] gi|269303495|gb|ACZ29045.1| DNA replication and repair protein RecF [Xylanimonas cellulosilytica DSM 15894] Length = 485 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 78/334 (23%), Positives = 134/334 (40%), Gaps = 36/334 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+YAS+ + + FVG NG GKTN++EAI +++ R ++ A + Sbjct: 1 MYVSHLSLLDFRSYASVDVELEPGPNAFVGRNGQGKTNLVEAIGYVATLGSHRVSNDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V G +++LE R+ R + R D L LR Sbjct: 61 VRAGAERAVVRTRIVRGDRAS---TVELEITPGRANRARINRGQLGRARDVL-GILRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P + G RR+ LD++V + PR + D+ER+ R R+ LL Sbjct: 117 FAPEDLALVKGDPDGRRKLLDQLVVQLLPRAAGLLGDYERVNRQRSALLKSLRGQRAAGR 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDG 234 D +A+ A+LG +I R++++ A+ + + + H +L LD Sbjct: 177 SPDLGTLEVWDAKAAQLGGQILGMRLQLVQAMRPHVAAAYAQVSDADGHAELGYRSSLDA 236 Query: 235 KF---------------------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 S L+ + R + +L+GPHR DL Sbjct: 237 VLPDDAGASAGGAAILPADLADAPPSAVELETLLLAGMAAARSQEVDRGVSLVGPHRDDL 296 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 ++ + S GE + + LA RL+ Sbjct: 297 VLTLGGLPAK-GYASHGESWSFALALRLASYRLL 329 Score = 42.6 bits (99), Expect = 0.098, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 304 ARLISNTTGF--APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 AR + G P+L+LD++ A LD +R+ L +V Q+ +T S Sbjct: 413 ARFWTEELGHDAEPVLILDDVFAELDLRRRDRLAELVAPAR-QVLVTAAVPDDVPS 467 >gi|308235535|ref|ZP_07666272.1| DNA replication and repair protein recF [Gardnerella vaginalis ATCC 14018] gi|311114016|ref|YP_003985237.1| recombination protein F [Gardnerella vaginalis ATCC 14019] gi|310945510|gb|ADP38214.1| recombination protein F [Gardnerella vaginalis ATCC 14019] Length = 422 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 156/393 (39%), Gaps = 31/393 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + FR+++S L F + + G NG+GKTNI+EAI +S G R +S + Sbjct: 1 MYVSRLVLDHFRSWSSCVLDFSPKINVLFGSNGLGKTNIVEAIEVISTGTSHRISSLMPL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + L + + +L + R +IN + ++ ++ Sbjct: 61 IECNNSCATIRLNTKNFDNNDLDETTYELTINSKGANRA-RINSGKSLYMKDIIGLVKSI 119 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174 P + RR F+D+ + P + + + ++ + + R LL Sbjct: 120 SFTPRDQNLIFSDPNIRRTFIDQAGALLIPNYLQVLQEYNHIAKQRAYLLKSLSNNNLAS 179 Query: 175 --EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 GY S + E G+ + R ++IN L+ + + V K + S+ Sbjct: 180 STNGYNPISDLEIWTGKFIESGIILTKNRKKIINLLNEIFPKIVDKLSRSSNFASIQY-- 237 Query: 233 DGKFDQSFCALKEEY--AKKLFDGRKM----DSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 + F++ KE+Y + + + + LIGPHR D + + Sbjct: 238 NPSFEELEVESKEDYFPQTAISEHFQRIYAGEVARGYNLIGPHRDDFTILINNHPAK-EF 296 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + + + +A + + PI++LD++ + LDE +R + + Q+F Sbjct: 297 ASNGEAWTLALALKMALFKTLEEKNNQKPIVILDDVFSQLDESRRKQILEFAKE-QEQVF 355 Query: 347 MTGTDKSVF--------DSLNETAKFMRISNHQ 371 +T S +S + +K + +N+Q Sbjct: 356 ITVASLSDIPKDDNLSEESFIDISKIVEKNNNQ 388 >gi|307717720|ref|YP_003873252.1| DNA replication and repair protein RecF [Spirochaeta thermophila DSM 6192] gi|306531445|gb|ADN00979.1| DNA replication and repair protein RecF [Spirochaeta thermophila DSM 6192] Length = 363 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 84/361 (23%), Positives = 148/361 (40%), Gaps = 15/361 (4%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN + + A +FVG+NG GKTNILE + L G FR + R G S Sbjct: 10 FRNIVTGTIDVGAPVVVFVGENGQGKTNILELVYLLCYGVSFRTRQNTFLIRRGRSSC-- 67 Query: 75 TFARVEGMEGLADISI-KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133 RV G + I + + + + +N+ I EL + Sbjct: 68 ---RVHGEFRTEEGYILPILVEIGPTSKEIFLNEKKIANRKELFSISPCIVFAHDDIQFV 124 Query: 134 SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 G + R+F+++++ +DP + + R++ RN L E D + Q+A++ Sbjct: 125 VGSPLLHRQFMNQILTLVDPLFLDSLRTYNRILTSRNEALKEARED--LLDVYDDQLADI 182 Query: 194 GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 +I + R M++A SS++ ++ F ++ K D KEE + L Sbjct: 183 AHQITVKRERMMDAFSSILRSTCEEFGFSGNVFDVSYRASLKGD-----GKEELMRILRS 237 Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313 R D M T GPHR L+ + + STGE +++ + + +A + +TG Sbjct: 238 ERTQDLMVGFTRRGPHRDRLVFTMNGHPVP-DYASTGEIRLLSLLLRVAQTTYVRESTGK 296 Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAKFMRISNHQA 372 PILL D++ LD KR + ++ F ++ + L + + + Sbjct: 297 TPILLFDDVLLELDPLKRRRVVEMIPHGRQSFFTFLPEEPILQVLGGGRSLVYHVVEGRI 356 Query: 373 L 373 + Sbjct: 357 V 357 >gi|254444638|ref|ZP_05058114.1| hypothetical protein VDG1235_2879 [Verrucomicrobiae bacterium DG1235] gi|198258946|gb|EDY83254.1| hypothetical protein VDG1235_2879 [Verrucomicrobiae bacterium DG1235] Length = 358 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 81/366 (22%), Positives = 144/366 (39%), Gaps = 13/366 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K K + +S +RN RL DA +G NG GKTN+LEAI +++ R FR A ++ Sbjct: 1 MKFKAIGVSNYRNIKLARLNLDADRVFLLGRNGQGKTNLLEAIGYVTSLRAFR-ARENEI 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +E E + R + + ++ +R + Sbjct: 60 LLGPESGQAEIVYEIEHEEFEDS---EARVLIKRKGKEVSLDGEAVRRASDFVGRFPAVT 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L I G RRRF+D + ID + + +++ ++ RN LL G Sbjct: 117 LSSEDLNIVRGSPGGRRRFIDTFLCGIDREYYVALQRYQKCVQERNALLKRGSS-MELMR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 EA++ + + R +I+ L S+ + + + + + + D + Sbjct: 176 PFEAELIGPALAVIRKRDSVISELGSMASRFYETLSGSAEAIGVDYKPNAYPDD-----E 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + Y L RK D + T GPHR D + ++ T S G+Q+ + + + A Sbjct: 231 DAYRAMLDRNRKRDEIMHSTSKGPHRDDFELTLNGRSAT-DFASDGQQRSIALSLAFATI 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 G P LL+D++ LD +R + + D Q+ TGT+ S + Sbjct: 290 AYWRERFGVCPALLIDDVLGELDPVRRERFWNAL-DESIQLIATGTELPDAAS-GKEWLV 347 Query: 365 MRISNH 370 R+ + Sbjct: 348 YRVEDG 353 >gi|295837754|ref|ZP_06824687.1| RecF protein [Streptomyces sp. SPB74] gi|295826659|gb|EFG64967.1| RecF protein [Streptomyces sp. SPB74] Length = 300 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 78/307 (25%), Positives = 124/307 (40%), Gaps = 19/307 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y + T FVG NG GKTN++EA+ +L+ R AS A + Sbjct: 1 MHVTHLSLADFRSYERAEVSLGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ F A + ++LE R+ R +R D L +R Sbjct: 61 VRAGAERAFVRAAV---TQDERSQLVELEINPGRANRARINRSSQVRPRDVL-GIVRTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + G ERRRFLD ++ A PR D+ER+++ RN LL Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARQPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176 Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLTGFL 232 D S + +A G ++ R ++I AL L+ E + P + L Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLAQRTDLIAALQPLVDKSYEQLAPGGGPAL-LEYRPSA 235 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 G Q + L + RK + TL+GPHR ++ + S GE Sbjct: 236 PGT-AQGREEFSAQLLAALGEMRKQEIERGVTLVGPHRD-DLLLKLGDLPAKGYASHGES 293 Query: 293 KVVLVGI 299 + + Sbjct: 294 WSYALAL 300 >gi|269216528|ref|ZP_06160382.1| DNA replication and repair protein RecF [Slackia exigua ATCC 700122] gi|269130057|gb|EEZ61139.1| DNA replication and repair protein RecF [Slackia exigua ATCC 700122] Length = 379 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 154/376 (40%), Gaps = 23/376 (6%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I+ ++ FRNY S + T+F+G N GK+N+LEAI ++ FR A + Sbjct: 2 DLHIQSFSLRNFRNYRSFEMDDVDPLTMFIGPNATGKSNVLEAIQLVTSATTFRGAKSRE 61 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R G A V+ ++ R S R + +N D L L Sbjct: 62 MIRWGCDC-----ADVKAHIVSDTRDLETSMRLTESSRSIAVNGKRKHGQDVL-GILPSV 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 P ++ +G RR LD + + HR D+ ++++ +N L+ G + S Sbjct: 116 MFSPEDMQLVTGAHGFRRDALDALGSQLSRTHRVLRRDYLKIVKHKNSLMKNG-IEGSLL 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ----- 238 S+ + G + + R + + L+ I + + L + + Sbjct: 175 DSVNDMLVTSGAHLYVYRAALFDNLAVRIARAYSEISSSGETLDMRYVPSWEDADLYSDR 234 Query: 239 --------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + LF+ +S R L+GPH L Y D +GS G Sbjct: 235 MRDAAHFFEVEECSNRMRRSLFNRHDEESRRGRALVGPHADKL-FFYLDGRNATLYGSQG 293 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +++ + + +A LI + G PILLLD++++ LDE +R AL ++ Q F+T T Sbjct: 294 QRRSIALSWKIAEIGLIEDVLGLKPILLLDDVASELDESRREALIGLLHH-DIQTFITTT 352 Query: 351 DKSVFD-SLNETAKFM 365 D F+ S+ A+ + Sbjct: 353 DMGAFEKSIANGARVV 368 >gi|258545194|ref|ZP_05705428.1| DNA replication and repair protein RecF [Cardiobacterium hominis ATCC 15826] gi|258519546|gb|EEV88405.1| DNA replication and repair protein RecF [Cardiobacterium hominis ATCC 15826] Length = 359 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 157/369 (42%), Gaps = 18/369 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +++ L + RN A+ L + T+ G NG GKT +LEAI L G+ FR + Sbjct: 3 RLRQLRLDNHRNLATTTLELHPRCTLISGKNGSGKTALLEAIYLLGRGKSFRENQTRHLI 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 P + AR+E + I+ R+ R L+++ ++ + L + L Sbjct: 63 AHDQP-YLRLIARIEKNGEEHLLGIEKSAREHR----LRLDGQNLKNLAALAALTPVQIL 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 RRR+LD ++ DP + ++ RN L + + ++ + Sbjct: 118 NSDNFAHIDQGPEHRRRYLDYGLYYHDPAFLPAWQRYNYALKNRNAALRQNWR-AADLAP 176 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + E G +I+ R + L + Y E + ++ + Q AL Sbjct: 177 WNHILGETGTQIDTLRRAYLEKLEDTLNTYHA-ELGGYERIHIHYQRGWPAGQPLAAL-- 233 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 L + D++ + T G HR+DL + D H S G+QK ++ + LA R Sbjct: 234 -----LDANNERDALLKHTRDGIHRADLRY-HADGRDIAHHYSRGQQKTLICALILAQTR 287 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSLNETAK 363 LI+ +G API+L+D+I+A LD ++ L + + D SQ+++T D + +L + + Sbjct: 288 LITADSGTAPIILIDDIAAELDRARQEKLLQFLADSDSQLYITHIDGDLELPPALADH-Q 346 Query: 364 FMRISNHQA 372 + I Sbjct: 347 RLHIEAGHI 355 >gi|33866581|ref|NP_898140.1| recombination protein F [Synechococcus sp. WH 8102] gi|51316337|sp|Q7U4L8|RECF_SYNPX RecName: Full=DNA replication and repair protein recF gi|33633359|emb|CAE08564.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. WH 8102] Length = 365 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 82/360 (22%), Positives = 157/360 (43%), Gaps = 17/360 (4%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN+ L L + +G NG+GK+N+LEA+ L R R + D+ + +P Sbjct: 4 FRNHRKLSLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWEAPRALL 63 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 +G + ++LE R + + + R +D L LR + Sbjct: 64 RAGLDDGDQ------LELELRRQGGRQARRNGKTLDRQLD-LIGPLRCIGFSALDLELVR 116 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-----YFDSSWCSSIEAQ 189 G RR++LDR+V ++P + + + RL+R R++L G + + + Q Sbjct: 117 GEPALRRQWLDRVVLQLEPVYADLLGRYNRLLRQRSQLWRRGAQTNPNQRDALLDAFDVQ 176 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEY 247 MA + +I+ R + L + + + +L L + D ++ + Sbjct: 177 MALVSTRIHRRRQRALRRLEPIARRWQSHLSAGSEELELHYQPGSRLDAEEAEEPWRLAI 236 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 ++L R + +GPHR ++ + GS+G+Q+ +++G+ LA L+ Sbjct: 237 EEQLRLQRPEEERLGSCRVGPHRDEVSLQLGGTP-ARRFGSSGQQRSLVLGLKLAELELV 295 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMR 366 + G AP+LLLD++ A LD +++ L V Q ++ T S F+ E ++ ++ Sbjct: 296 TQLFGEAPLLLLDDVLAELDPTRQHLLLEAVGQ-EHQCLVSATHLSGFEGGWREHSQILK 354 >gi|291297364|ref|YP_003508762.1| DNA replication and repair protein RecF [Meiothermus ruber DSM 1279] gi|290472323|gb|ADD29742.1| DNA replication and repair protein RecF [Meiothermus ruber DSM 1279] Length = 357 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 149/379 (39%), Gaps = 39/379 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L FRN + T VG N GKTN+LEAI L+ G R A+ Sbjct: 1 MRLLRLRQKNFRNLFTPVFAPGPGLTTVVGGNAQGKTNLLEAIE-LALGGELRNG-LAER 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + A +E G + + +KL R R ++N+ + EL + Sbjct: 59 IAFGQGEAW-LHAEIETQFGNSRLEVKL----SREGREHRLNEAPA-SLRELAQLPGAVL 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 L P + G ERRRFLD ++ R+R + + R ++ RN +L G Sbjct: 113 LGPDDLELVLGPPEERRRFLDVLLSRFSARYRSMLSQYNRALQQRNAVLKSGFRPTSRGQ 172 Query: 177 -----YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 + ++ + G +I R M+ L+ L E ++ + L L+ Sbjct: 173 GEGAPSSTRASIGIWNHELVKYGSEILSLRRRMLAKLTPLAREAYRELAPGELNLELSET 232 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 D + + + L D + D T +GPHR DL++ + GS GE Sbjct: 233 TD----------PDRFLQTLEDNLQDDLQRGATSVGPHRDDLVI-LLEGREAARFGSRGE 281 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 + + + + LA RL+ AP+LL+DE + LD +R AL + Q + G + Sbjct: 282 CRSIALALRLAEHRLLWQHYEEAPLLLVDEWHSELDNRRRGALLAYAQSLP-QAILAGLE 340 Query: 352 KSVFDSLNETAKFMRISNH 370 T + I Sbjct: 341 T------PGTGAVIEIEAG 353 >gi|312792286|ref|YP_004025209.1| DNA replication and repair protein recf [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179426|gb|ADQ39596.1| DNA replication and repair protein RecF [Caldicellulosiruptor kristjanssonii 177R1B] Length = 353 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 148/349 (42%), Gaps = 21/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + I FR+Y F + + VG+N GKT++LEA+ F G+ F+ + D Sbjct: 1 MKIKRIYIENFRSYKQRFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFK-SRDVDA 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123 S + ++E + DI + DR+ + + +ND IR + EL + Sbjct: 60 INFD-----SYYFKLEMSAEVGDIEYSILCYVDRALEKRIMLNDKKIRRLSELISLFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RRRFLD V + P + +++R + RN L Y Sbjct: 115 FFEPDTTELIKHQPSTRRRFLDMEVAKLYPYMTKVYSEYQRALLSRNAFLK-SYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++LG I R E+I+ LS + L L + Sbjct: 174 DVYDMQISQLGFLIFQKRQEVIDKLSIEAQKIFSLVFENKSLLELRYMPSIN-----ASS 228 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +EEY K+L D T G HR D + K I S G+ K+ V + LA Sbjct: 229 EEEYYKELKKCLLKDLNLGYTTKGVHRDDFGILIDGKP-AIDFASEGQIKLAAVSVVLAT 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L + P+L+LD++ + LD+ KR L + ++ Q F+T + Sbjct: 288 SLLYTE-----PVLILDDVFSELDKFKRKNLVKFISQY--QSFVTSAED 329 >gi|294786217|ref|ZP_06751471.1| RecF protein [Parascardovia denticolens F0305] gi|315225747|ref|ZP_07867535.1| recombination protein F [Parascardovia denticolens DSM 10105] gi|294485050|gb|EFG32684.1| RecF protein [Parascardovia denticolens F0305] gi|315119879|gb|EFT83011.1| recombination protein F [Parascardovia denticolens DSM 10105] Length = 405 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 69/381 (18%), Positives = 140/381 (36%), Gaps = 35/381 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + ++R++ + + VG NG+GKTNI+EA+ FLS G R S + Sbjct: 1 MYLSRLILDDYRSWPHCLVDLTPGVNVLVGHNGLGKTNIMEAVEFLSTGGSHRVRSSQPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + + A++ + ++ + R +IN+ + ++ ++ Sbjct: 61 VRQGAKAA-TIRAKLVQGDRETQYTVTI---PGRGANRAKINNGPSLYMRDIVGQVKTVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177 P + S RRRFLD + + + + + + R LL Sbjct: 117 FTPEDQLLISMDPGHRRRFLDDAGVQLIRPYYDLLQRYAHVAKQRVALLKRISQARFGSS 176 Query: 178 -------FDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKL 226 D+S+ Q+ LG+ + R ++ LS + + +L Sbjct: 177 PFGGLDDLDASYASLEVWTGQLINLGLALTQERADICQRLSPIFNRTYRHLAGDGQEAQL 236 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDLIVDYCDKAI 282 + + +E ++ + + R LIGPHR D+ Sbjct: 237 RYLPSFEEFLEIDPAGDQEVVFDRISQHFQRLFEGELAQGRNLIGPHRDDVEFVLNGFP- 295 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISN-------TTGFAPILLLDEISAHLDEDKRNALF 335 + S GE + + + ++ +L+ G PIL+LD++ + LD +R + Sbjct: 296 ARDYASNGELWTLSLALKMSLFQLLLRVEQEGEEGEGGEPILILDDVFSQLDNSRREKIV 355 Query: 336 RIVTDIGSQIFMTGTDKSVFD 356 + Q+ +T Sbjct: 356 DFASK-QGQVLITAASPDDLP 375 >gi|222528061|ref|YP_002571943.1| DNA replication and repair protein RecF [Caldicellulosiruptor bescii DSM 6725] gi|222454908|gb|ACM59170.1| DNA replication and repair protein RecF [Caldicellulosiruptor bescii DSM 6725] Length = 353 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 148/349 (42%), Gaps = 21/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + + FR Y F + + VG+N GKT++LEA+ F G+ F+ + D Sbjct: 1 MKIKSIYVENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCMCGKSFK-SRDIDA 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 S + ++E + + D + D+++ + + IND I+ + EL + Sbjct: 60 INFD-----SFYFKLEMLAEVGDTEYNVFCYVDKALDKRIMINDKKIKKLSELISTFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RRRFLD V + P + ++ R + RN L Y Sbjct: 115 FFEPDATELIKHQPKLRRRFLDMEVTKLYPYMTKVYSEYHRALLSRNAFLK-SYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++LG I R E+IN LS + L L + Sbjct: 174 DVYDMQISQLGFLIFQKRQEVINKLSIEAQKIFSLVFENKSMLELKYMPSIA-----AST 228 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 ++EY K++ + D T G HR D + DK I S G+ K+ V + LA Sbjct: 229 EKEYYKEIKKNIEKDLSLGYTTKGVHRDDFEI-LIDKKPAINFASEGQIKLAAVSVVLAT 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L S P+L+LD++ + LD KR L + ++ Q F+T + Sbjct: 288 SLLYSE-----PVLILDDVFSELDSFKRKNLVKFISQY--QSFVTSAED 329 >gi|311063462|ref|YP_003970187.1| RecF DNA replication and repair protein [Bifidobacterium bifidum PRL2010] gi|310865781|gb|ADP35150.1| RecF DNA replication and repair protein [Bifidobacterium bifidum PRL2010] Length = 437 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 79/412 (19%), Positives = 146/412 (35%), Gaps = 62/412 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R++ L I G NG+GKTNI+EAI LS G R +S + Sbjct: 1 MYISRLALDHYRSWNHCVLDLTPGINILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPL 60 Query: 65 TRIGSPSFFSTFARVEG-------------------------MEGLADISIKLETRDDRS 99 + G + A +E + +++ + Sbjct: 61 VQRG-EHAATIRANIESVTDPEPADDGVNASADAVYISDMKPVRQTQTTTLEATIAARGA 119 Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159 R +IN R + E+ L P ++ +G RR F++++ + P + R+ Sbjct: 120 NRA-RINGGQSRYLREILGTLPTVSFTPEDQQLVAGDPAVRRSFINQVASLLIPGYANRL 178 Query: 160 IDFERLMRGRNRLLTE--------GYFDSSW--CSSIEAQMAELGVKINIARVEMINALS 209 F + + R LL + D++ Q E GV ++ R +I L+ Sbjct: 179 QSFTHVAKQRAALLKQLGQWQRAGSPIDAALSGLEIWTGQFIEAGVALSRDRQRIIAELN 238 Query: 210 SLIMEYVQK-------------------ENFPHIKLSLT-GFLDGKFDQSFCALKEEYAK 249 + + + F + Q+ L ++ + Sbjct: 239 KSFGPLYARLAGVAGDLPSNAEIQDAAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQ 298 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 +++ G + LIGP R DL+V S GE + + + +A R + Sbjct: 299 RIYPG---EVSRGVNLIGPQRDDLLVTLNGMP-AREFASNGEMWTLALALKMAQYRALCE 354 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 P+++LD++ A LDE +R + R Q+ +T +S L Sbjct: 355 YFDTRPVVILDDVFAQLDESRRTEILRFAAA-QDQVLITAAAESDIPILPAN 405 >gi|325969852|ref|YP_004246043.1| DNA replication and repair protein RecF [Spirochaeta sp. Buddy] gi|324025090|gb|ADY11849.1| DNA replication and repair protein RecF [Spirochaeta sp. Buddy] Length = 360 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 152/371 (40%), Gaps = 14/371 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ L ++FRN S R+ D + +G NG GKTN+LEA+ L G FR ++ Sbjct: 1 MRFIELWTNQFRNLVSQRIPVDNRQVFLIGPNGQGKTNLLEALYALCYGSSFRTNQLKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 T G +F + + ++ LE +D + R + ++D ++ EL ++ Sbjct: 61 TVHGEKAFKIVGIYL--GDDQIRHTLMLEWKDGK--RSMSLDDREVKDRKELIYNIPCIV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 G +RRRF D+ + +P + + ++R RN+ + +G F Sbjct: 117 FSHDDIFFIKGEPEQRRRFFDQTMSMYNPLFFDDLRRYRLVLRQRNQAIKDGRF--ELLD 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A+ G+ I R + + + + +++ + + CA + Sbjct: 175 LYDLQLAKYGLAIQSERTRAVYEFDQIFPSMYKDVSQNTMEVHIEYHPSW----NDCATE 230 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EE + L R D T G HR +V + + GSTG+ ++ + A Sbjct: 231 EEIVEYLARTRSRDISMLTTTSGIHRDRFLVMEAGQPFSQT-GSTGQLRLASLIFRTAQM 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNET-A 362 TG P++L+D++ LD +KR ++ Q F T ++ F L E A Sbjct: 290 AFFQKKTGKEPLILVDDVLLELDFEKREHFLHLMQTY-CQAFFTFLPEEHYFSELAEEGA 348 Query: 363 KFMRISNHQAL 373 + + L Sbjct: 349 LLYTVQEGRFL 359 >gi|312877902|ref|ZP_07737847.1| DNA replication and repair protein RecF [Caldicellulosiruptor lactoaceticus 6A] gi|311795328|gb|EFR11712.1| DNA replication and repair protein RecF [Caldicellulosiruptor lactoaceticus 6A] Length = 353 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 149/349 (42%), Gaps = 21/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + I FR+Y F + + VG+N GKT++LEA+ F G+ F+ + D Sbjct: 1 MKIKRIYIENFRSYKQRFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFK-SRDVDA 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 S + ++E + DI + DR++ + + IND I+ + EL + Sbjct: 60 INFD-----SYYFKLEMSAEVGDIEYSILCYVDRALDKRIMINDKKIKRLSELISLFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RRRFLD V + P + +++R + RN L Y Sbjct: 115 FYEPDTTELVKHQPSTRRRFLDMEVAKLYPYMTKVYSEYQRALLSRNAFLK-SYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++LG I R E+I+ LS + L L + Sbjct: 174 DVYDMQISQLGFLIFQKRQEVIDKLSIEAQKIFSLVFENKSLLELRYMPSIN-----ASS 228 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +EEY K+L D T G HR D + K I S G+ K+ V + LA Sbjct: 229 EEEYYKELKKCLLKDLNLGYTTKGVHRDDFGILIDGKP-AIDFASEGQIKLAAVSVVLAT 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L + P+L+LD++ + LD+ KR L + ++ Q F+T + Sbjct: 288 SLLYTE-----PVLILDDVFSELDKFKRKNLVKFISQY--QSFVTSAED 329 >gi|86606664|ref|YP_475427.1| recombination protein F [Synechococcus sp. JA-3-3Ab] gi|97181044|sp|Q2JQG8|RECF_SYNJA RecName: Full=DNA replication and repair protein recF gi|86555206|gb|ABD00164.1| DNA replication and repair protein RecF [Synechococcus sp. JA-3-3Ab] Length = 380 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 174/376 (46%), Gaps = 14/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++FL++ FRNY ++ F+A TI VG+N GKTN+LEA+ L+ R R ++ Sbjct: 1 MYLRFLHLWHFRNYRDQKISFEAPKTILVGENAQGKTNLLEAVELLATLRSRRAGRDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ A VE + +++++L ++ RS L++N +R + + Sbjct: 61 VQQGAEKA-RIAATVERLGVAHELAMELRSQGGRS---LRVNGQGLRRQSDFLGQVSAVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 + G RR +LD ++ ++P + + + ++++ RN LL + + Sbjct: 117 FSSLDLELVRGAPEARRTWLDGVLLQLEPAYLGLVEQYRQILKQRNALLKQDPLAAGDKV 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + +AQ+A LG +I R ++ L L + Q + LSLT Sbjct: 177 PQMAFWDAQLATLGSRILRRRARLLQRLEPLAARWHQAISGGRETLSLTYRPQVPLPDPQ 236 Query: 241 CA---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++ ++ + + +L+GPHR ++ + D A+GS G+Q+ +++ Sbjct: 237 ADPKVVQAQFLAAIRAKAAAEQALGTSLVGPHRDEVELGI-DGVAARAYGSQGQQRTLVL 295 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356 + LA LI G P+LLLD++ A LD ++N L + + Q +T T FD Sbjct: 296 ALKLAELELIEQVKGDPPLLLLDDVLAELDLHRQNQLLEAIQE-RVQTLVTTTHLGSFDA 354 Query: 357 SLNETAKFMRISNHQA 372 + + A+ +++ Q Sbjct: 355 AWLQGAQILQVHQGQI 370 >gi|300934347|ref|ZP_07149603.1| recombination protein F [Corynebacterium resistens DSM 45100] Length = 452 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 152/399 (38%), Gaps = 68/399 (17%) Query: 29 HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP-SFFSTFARVEGMEGLAD 87 +IF G NG GKTNI+EA+ +L+ R S + + R G + S A +G E Sbjct: 1 MSIFSGPNGHGKTNIVEALGYLAHLGSHRVTSDSALVREGQKLASISATAVNDGRE---- 56 Query: 88 ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147 +S L R + R IN +R ++ +R + P + G +RR FLD + Sbjct: 57 LSTHLAIRASGANRAY-INRTAMRSPRDILGIVRTTLFSPEDLALIRGEPEQRRNFLDTI 115 Query: 148 VFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----------------------------- 178 + A PR D+++ +R RN LL F Sbjct: 116 MLARYPRLAGVKADYDKALRQRNALLRNSSFVLRHLTESPSQASSNRSTDDSSEIKGAHS 175 Query: 179 ----------DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226 + + Q+A LG +I ARV++++ LS + + Q+ + Sbjct: 176 RSSFLSDAESALATLDVWDGQLAALGGQIMSARVQIVHDLSPHVAKTYQRLAPESRPAHM 235 Query: 227 SLTGFLDGKFDQ-----------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 + T +D + S + + + R + TL+GPH Sbjct: 236 AYTSTIDAQLADFGVQLGKSVPGEPTALLSPEVAEATLLRAFAEKRPHEIDRGTTLLGPH 295 Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 R D+ + S GE + + L A + + G PI++LD++ A LD + Sbjct: 296 RDDVTFTLGTQPAK-GFASHGESWSFALSLRLG-AYFMGRSDGTEPIVILDDVFAELDRN 353 Query: 330 KRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367 +R L ++ D Q+ +T + + + L A + Sbjct: 354 RRRKLVDLLEDAE-QVLITAAVGEDIPEELRAKASIFDV 391 >gi|261854633|ref|YP_003261916.1| DNA replication and repair protein RecF [Halothiobacillus neapolitanus c2] gi|261835102|gb|ACX94869.1| DNA replication and repair protein RecF [Halothiobacillus neapolitanus c2] Length = 359 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 18/371 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 + L+I++FRN A + VGDNG GKT++LEAI +LS + FR ++ D+ Sbjct: 5 HLTSLSITQFRNLTMTDCPLSAGFNLLVGDNGAGKTSVLEAIYYLSTLKSFRTQTHNDLI 64 Query: 66 -RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R R + D + LE D+ L++ + HL + Sbjct: 65 ARYPDRDRGCAVVRAGVHQDDHDFFMALERCKDQ--FRLRLGREEVPRASLFVAHLPVLA 122 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L D + RR+F+DRM F + F R+++ RN L G Sbjct: 123 LHAQSDDLVLAGPEFRRKFIDRMAFYLFADFVPAYAQFARMLKQRNAALRTGQS----TE 178 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + G ++N RV ++ L +++ + + P + + + K Sbjct: 179 IWDPLFIQYGERLNEQRVAALDLLKTVLPQVFEAL-APQLSVDMQFHPGHKSGL------ 231 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + ++ L R+ D +TLIGP R+D++ D A + S G+ KV + LA A Sbjct: 232 -DLSEALARNRERDREMGQTLIGPQRADILFTLNDYAFK-SFASRGQIKVFTAALTLATA 289 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + G +LL D+ + D +AL ++++G Q+F++ D+ D + Sbjct: 290 HIWQAQRGKRAVLLFDDFMSEFDAHHSSALLHYLSNMGHQVFISAVDRQQIDFPFDA--V 347 Query: 365 MRISNHQALCI 375 R+ Q + Sbjct: 348 FRLDAGQISAV 358 >gi|260885575|ref|ZP_05897039.1| RecF protein [Prevotella tannerae ATCC 51259] gi|260851611|gb|EEX71480.1| RecF protein [Prevotella tannerae ATCC 51259] Length = 342 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 79/350 (22%), Positives = 144/350 (41%), Gaps = 18/350 (5%) Query: 29 HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI 88 FVGDNG+GKTN+L+AI +LS + R ++ + G +F + G I Sbjct: 2 VNCFVGDNGMGKTNLLDAIYYLSFCKSARSSTDVTNVKHGEQAFMLQGLYDDDTGGEDKI 61 Query: 89 SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148 +I + +R N I+ E + + + PS + +G S RRRF+D ++ Sbjct: 62 AIGYHEGRRKQLRR---NGKDIKRFAEHIGTIPLVMISPSDSELVTGGSDNRRRFMDTVI 118 Query: 149 FAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207 D + ++ +E+ +R RN LL E ++ S IE M+ I R + Sbjct: 119 AQYDATYLEALMRYEKTLRQRNALLKKEEEPEADVISIIEDIMSRDAAIIYQGRKLFVET 178 Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267 ++ ++ + ++++ G + E L R + + TL G Sbjct: 179 FTAFFQGIYRELCYDPEQVNIVYESHGN--------RGELKPMLEQYRSRERLVGYTLHG 230 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS-NTTGFAPILLLDEISAHL 326 H+ DL++ + S G+ K + + LA + ++ P+LLLD+I L Sbjct: 231 IHKDDLLLYINGYPVKQE-ASQGQTKTYFIALKLAQYVYLRTKSSLRQPLLLLDDIFDKL 289 Query: 327 DEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSLNE---TAKFMRISNHQA 372 D + + R + QIF+T T K + + K + + + Sbjct: 290 DAGRVEHIIRYAAEAQFGQIFITDTSKERLLPILQLQRNYKLFTVKDGEI 339 >gi|118615922|ref|YP_904254.1| recombination protein F [Mycobacterium ulcerans Agy99] gi|166220719|sp|A0PKB4|RECF_MYCUA RecName: Full=DNA replication and repair protein recF gi|118568032|gb|ABL02783.1| DNA replication and repair protein RecF [Mycobacterium ulcerans Agy99] Length = 385 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 149/368 (40%), Gaps = 22/368 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A L T+FVG NG GKTNI+EA+ + + R + A + Sbjct: 1 MYVRHLGLRDFRSWAHADLELGPGRTVFVGPNGFGKTNIIEALWYSATLGSHRVGTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + ++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGADRAVISTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P + G +RRR+LD + P D+++++R R LL Sbjct: 117 FAPEDLALVRGDPADRRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKSVSGARFRGD 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--- 233 ++++A+ G ++ AR++++ L+ + + Q ++ Sbjct: 177 RGALDTLDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAYRASMDA 236 Query: 234 ----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 AL+E L R + L+GPHR DL + D+ S Sbjct: 237 FVAADDAAPDRVALEEGLLAALAARRDAELERGVCLVGPHRDDLELRLGDQPAK-GFASH 295 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 GE + V A + G P+LLLD++ A LD +R AL R V + Q+ +T Sbjct: 296 GESWSMAVA-LRLAAFALLRADGSEPVLLLDDVFAELDAARRTALAR-VAESAEQVLVTA 353 Query: 350 TDKSVFDS 357 S Sbjct: 354 AVLEDIPS 361 >gi|183602670|ref|ZP_02964034.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis HN019] gi|219682502|ref|YP_002468885.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis AD011] gi|241190069|ref|YP_002967463.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195475|ref|YP_002969030.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218088|gb|EDT88735.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis HN019] gi|219620152|gb|ACL28309.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis AD011] gi|240248461|gb|ACS45401.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250029|gb|ACS46968.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177772|gb|ADC85018.1| RecF [Bifidobacterium animalis subsp. lactis BB-12] gi|295793056|gb|ADG32591.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis V9] Length = 475 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 78/389 (20%), Positives = 143/389 (36%), Gaps = 36/389 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + FR++ + L F I G NG+GKTNI+EA+ LS G R ++ + Sbjct: 4 VSRLALDHFRSWTNCVLDFKPGVNILEGPNGLGKTNIVEALEVLSTGSSHRASTSQPLVE 63 Query: 67 IGSPSFFSTFARVE--------GMEGLADISIKLETRDD-RSVRCLQINDVVIRVVDELN 117 G P+ + A +E E + D + E R +++ + ++ Sbjct: 64 QGFPAA-AIRANIEELSEDFENNTETIDDRTTTFELTIRVRGANRARVDGGPSLYMRDIV 122 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 + + P R+ G RR F+D+ + + + F + + R LL + Sbjct: 123 GRVPLVAFTPDDQRLVWGDPAVRRSFIDQAASVLVRGYTDLLQRFTHIAKQRAALLKQIG 182 Query: 178 FDS-------------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--- 221 + AQ E G+++ R+ +I L+ VQ+ + Sbjct: 183 AQEGVSVSEEARQMRMNGLEVWTAQFIETGLELTRQRMAVIGMLNEYFGTIVQELSDVDQ 242 Query: 222 -------PHI-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 P +L LT + +K ++ + LIGP R D+ Sbjct: 243 TATLVYEPSFDELYLTQGAEAGEQGGPERVKAAISEHFQRIYTGEVARGVNLIGPQRDDV 302 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 ++ + S GE + + + +A RL+ G PI++LD++ A LD +R Sbjct: 303 SIELNGMP-AREYSSNGESWTLALALKMALYRLLERKAGERPIVVLDDVFAQLDPSRRAK 361 Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + Q+ +T L A Sbjct: 362 IMEFALR-QDQVIITVAAAGDVPELPGDA 389 >gi|86610145|ref|YP_478907.1| recombination protein F [Synechococcus sp. JA-2-3B'a(2-13)] gi|97181049|sp|Q2JIB8|RECF_SYNJB RecName: Full=DNA replication and repair protein recF gi|86558687|gb|ABD03644.1| DNA replication and repair protein RecF [Synechococcus sp. JA-2-3B'a(2-13)] Length = 380 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 169/377 (44%), Gaps = 14/377 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY + FDA TI VG+N GKTN+LEA+ L+ R R + ++ Sbjct: 1 MYLRSLHLRHFRNYRDQEITFDAPKTILVGENAQGKTNLLEAVELLATLRSRRASRDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A VE + ++ ++L + RS L+++ V+R + + Sbjct: 61 V-YQEERQAQIAATVERLGVAHELVMELRSSGRRS---LKVDGQVLRRQADFLGQVNAVV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180 + G RR +LD ++ ++P + + + +++R RN LL + + Sbjct: 117 FSSLDLELVRGGPEARRNWLDGVLLQLEPAYLGLVEQYRQILRQRNALLKQDPAAAGDKF 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237 S +AQ+A G +I R ++ L L + + + L+LT Sbjct: 177 SQMDFWDAQLATTGSRIMRRRARLLQRLEPLAAHWHRVISGGRETLTLTYRPQVPLPDPQ 236 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 S ++ ++ ++ + +L+GPHR ++ + + A+GS G+Q+ +++ Sbjct: 237 ASPEVIQAQFLAEIRAKAAAEHSLGSSLVGPHRDEVELCI-NGVAARAYGSQGQQRTLVL 295 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 + LA LI P+LLLD++ A LD ++N L + + Q +T T FD+ Sbjct: 296 ALKLAELELIEQVVRDPPLLLLDDVLAELDLHRQNQLLEAIQE-RVQTLVTTTHLGSFDA 354 Query: 358 -LNETAKFMRISNHQAL 373 + A+ +++ Q Sbjct: 355 GWLKAAQILQVQGGQLF 371 >gi|315187337|gb|EFU21093.1| DNA replication and repair protein RecF [Spirochaeta thermophila DSM 6578] Length = 363 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 81/361 (22%), Positives = 146/361 (40%), Gaps = 15/361 (4%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN + + A +FVG+NG GKTNILE + L G FR + G S Sbjct: 10 FRNIVTGTIDVGAPVVVFVGENGQGKTNILELVYLLCYGVSFRTRQNTVLITRGRSSC-- 67 Query: 75 TFARVEGMEGLADISI-KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133 R+ G + I + + + + +N+ I EL + Sbjct: 68 ---RIHGEFRTEEGYILPILVEIGPTSKEIFLNEKKIANRKELFSISPCIVFAHDDIQFV 124 Query: 134 SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 G + R+F+++++ +DP + + R++ RN L E D + Q+A++ Sbjct: 125 VGSPLLHRQFMNQILTLVDPLFLDSLRTYNRILTSRNEALKEARED--LLEVYDDQLADI 182 Query: 194 GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 +I + R M++A SS++ ++ F ++ + D KEE + L Sbjct: 183 AHQITVKRERMMDAFSSILRSTCEEFGFSGNVFDVSYRPSLRGD-----GKEELMRILRS 237 Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313 R D M T GPHR L+ + + STGE +++ + + +A + +TG Sbjct: 238 ERTQDLMVGFTRRGPHRDRLVFTMNGHPVP-DYASTGEIRLLSLLLRVAQTTYVRESTGK 296 Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAKFMRISNHQA 372 PILL D++ LD KR + ++ F ++ + L + + + Sbjct: 297 TPILLFDDVLLELDPLKRRRVVEMIPHGRQSFFTFLPEEPILQVLGGGRSLVYHVVEGRI 356 Query: 373 L 373 Sbjct: 357 F 357 >gi|206900621|ref|YP_002251531.1| DNA replication and repair protein RecF, putative [Dictyoglomus thermophilum H-6-12] gi|206739724|gb|ACI18782.1| DNA replication and repair protein RecF, putative [Dictyoglomus thermophilum H-6-12] Length = 340 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 78/349 (22%), Positives = 143/349 (40%), Gaps = 26/349 (7%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ I+ +++ FRN++ F + G NG GKT+ILEAI++LS R FR A Sbjct: 5 RMLIESISLKNFRNFSDFSTSFKDGINVIYGPNGSGKTSILEAIAYLSNPRSFRSARDYQ 64 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + +IG FF +V + +I+I + + + +N ++ ++ + Sbjct: 65 LIKIGEK-FFEITGKVLTGKEHHEITINYYYDELKKEKTAYLNGFKVKRFRDIQEIFIAI 123 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + G + +RR F D + +D + + ++E+L+ RN +L D + Sbjct: 124 PFSFKDYAMIDGYATQRRDFFDDIFSLLDLEYYEILRNYEKLLDERNEILKSENIDRDYV 183 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + +M L KI R MI LS + P K+ G Sbjct: 184 IYLAKEMQPLAEKIVEKREAMIKELSKYLD--------PMFKVEYVSEFKG--------- 226 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K + D + D T +GPH D + Y S G+++++ + + LA Sbjct: 227 -----KNIADYIEEDIARGSTTVGPHVHDDYIFYYKGNPAKYFASEGQKRLLYLSLVLAF 281 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +LI T + P+ L D+ LD L + ++++ Q+ + Sbjct: 282 RKLIEETKLYEPVFLFDDPINVLDPH---LLEKFISNLSGQVIIASLSP 327 >gi|315605505|ref|ZP_07880542.1| recombination protein F [Actinomyces sp. oral taxon 180 str. F0310] gi|315312772|gb|EFU60852.1| recombination protein F [Actinomyces sp. oral taxon 180 str. F0310] Length = 398 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 92/397 (23%), Positives = 151/397 (38%), Gaps = 31/397 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +FR++ + A T+ VG NG GKTN++EA+++LS R + + Sbjct: 1 MRVSHLALDDFRSWKHGVVELPAGTTVLVGANGQGKTNLVEALAYLSAFSSHRVGAEGAL 60 Query: 65 TRIGSPSFF----STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 RI S R + + ++LE ++ R +IN +R D L + Sbjct: 61 VRIPSDEAENPPGGAVIRARIVSSGREQVVELEIVRGKANRA-RINRAQVRPRDIL-GLV 118 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--- 177 R P + RR FLD + + P H DF+R+ R R L+ Sbjct: 119 RTVVFAPEDLSLVRADPSVRRSFLDDLATQLSPLHASVRADFDRVARQRAALMKAAQASS 178 Query: 178 -----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 D S + Q AEL +I+ R + AL +L+L Sbjct: 179 RRGRTPDLSTLHVWDCQFAELSARISATRAAVAAALVEPTRRAYDDVADSPRRLTLAFDA 238 Query: 233 DGK-------FDQSFCAL------KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 D + L E L R + L+G HR DL + Sbjct: 239 SVDRVIGTDPEDPASADLTDAQAQAERMLAALAHVRDKEIERGVNLVGAHRDDLSLSLGS 298 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + + S GE V + + L L+S+ PIL+LD++ A LD +R L + Sbjct: 299 MPVK-GYASHGESWSVALALRLGAFELLSDGE-DTPILILDDVFAELDSSRRQGLAS-LA 355 Query: 340 DIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQALCI 375 Q+ +T + + SL A +R+ + I Sbjct: 356 SRAEQVIVTCAVAEDLPSSLPHHALHVRLDAERGTVI 392 >gi|218961815|ref|YP_001741590.1| putative putative DNA repair and genetic recombination (recF-like) [Candidatus Cloacamonas acidaminovorans] gi|167730472|emb|CAO81384.1| putative putative DNA repair and genetic recombination (recF-like) [Candidatus Cloacamonas acidaminovorans] Length = 358 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 74/350 (21%), Positives = 151/350 (43%), Gaps = 9/350 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + FR+Y F+ Q + +G NG GKTN+LEAI++ S G+ R ++ Sbjct: 1 MNLAKIELENFRSYRQNEFDFNPQGCLIIGPNGCGKTNLLEAIAYCSIGKSIRFHHDEEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G F + + +S+ + L+I+++ IR + L + +++ + Sbjct: 61 LNFGGQFFRVQSLFISDQQTPKKVSLSY----ADQHKLLKIDELPIRQLSSLFEVVKVIY 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + SG RR++ D + + P + + F +++ RN +L Y + + Sbjct: 117 CAPEDHLLISGSPRFRRQYFDLAISQLYPPYINVLRHFLHIVQQRNAMLKRNYSRAE-IT 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 S A ++ R + +++ E + +SL K + Sbjct: 176 SWNLSFASSLAEVWNYRNRYLKQVNTAFQETFKDIFPASTAISLAYIPSLKL--PLESSP 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 EE K L + + + +R+L+G H D + + + + S G++++ ++ + L A Sbjct: 234 EEIIKHLATIEEREKLLQRSLVGAHLDDYEFKLKGRKM-LTYASQGQKRIAVIILKLIQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 RLI TG PI+L D+I A LD + + + Q+F+ + + Sbjct: 293 RLIEKVTGIKPIMLFDDIFAELDTFHSQQIRNCINN-RYQVFIASPKEDL 341 >gi|269925147|ref|YP_003321770.1| DNA replication and repair protein RecF [Thermobaculum terrenum ATCC BAA-798] gi|269788807|gb|ACZ40948.1| DNA replication and repair protein RecF [Thermobaculum terrenum ATCC BAA-798] Length = 386 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 84/350 (24%), Positives = 154/350 (44%), Gaps = 27/350 (7%) Query: 28 QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS------FFSTFARVEG 81 + +G N GKT +LEAI L+ + R S ++ + S F A V Sbjct: 4 GPILVLGPNASGKTTLLEAIYLLATTKSHRAGSDRELINWNTESEEGVPAFARVAAEVRR 63 Query: 82 MEG-LADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSM 138 +I+I E+ + + + +++N V R +D L + + P + G Sbjct: 64 RSPIQVEITILKESTAQGENVRKRIRVNGVNKRAID-LIGQVNVVMFGPQDLDLIVGAPS 122 Query: 139 ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------EGYFDSSWCSSIEAQ 189 RRR+L+ + +D ++ R + +ER++ RN L+ + + + + Sbjct: 123 LRRRYLNITISQLDHQYVRTLQTYERVVLQRNTLIKALSDRAFKLRDESINDQFAYWDNE 182 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FLDGKFDQS-FCA 242 + G + R+E+++ ++ L K +LS+ L + D Sbjct: 183 LVNQGSYLLARRLEILSRMNELASMVHSKLTGSSQELSIAYKSTLFDSLPLQLDNPREEE 242 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 +++ Y KK+ D R+ + TL+GPHR D+ +GS G+Q+ V++ I LA Sbjct: 243 IRDLYIKKIHDLRREELRRGMTLVGPHRDDISF-LVGGVDVGVYGSRGQQRSVILAIKLA 301 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 L+ + TG PILLLD++ + LD ++R L + V + Q +T TD Sbjct: 302 EVDLMKSITGDLPILLLDDVVSELDPERRRYLLQNVLQLSQQALVTTTDL 351 >gi|332296672|ref|YP_004438594.1| DNA replication and repair protein recF [Treponema brennaborense DSM 12168] gi|332179775|gb|AEE15463.1| DNA replication and repair protein recF [Treponema brennaborense DSM 12168] Length = 362 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 81/368 (22%), Positives = 152/368 (41%), Gaps = 10/368 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + L+ + FRN + ++ ++ FVG+NG GK+N+LEA+ + S FR + ++ Sbjct: 1 MPFLSLSCTNFRNLKNDKIDLLSKEVYFVGENGQGKSNLLEALYYASYASSFRTHNEQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F E + + +SI E + +Q N I EL + Sbjct: 61 VRYDEKAFSIRTLFREENDSVVSMSILFE----NGKKTIQKNAKKITDRKELVNAIPCVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 G RR F+D+ + D + M F+++++ RN +L +D Sbjct: 117 FCHDDLDFAVGEPERRRFFIDQSLSMYDALYIDEMRRFKKVLKSRNLVLKNQQYD--MLD 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + Q+A+ G+ + R +MI + + +K ++++ K Sbjct: 175 AYDTQLAQNGLYVQYKRKKMIFTFNGIFTALYEKVTGID-GVTISYEPSWKETSHTVPDV 233 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + L + R D M T+ GPHR + K I STG++++ + + A A Sbjct: 234 DSIVDLLKNRRSADMMMGTTMSGPHRDRIRFIRGGKPF-IPTASTGQRRLASILLRAAQA 292 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363 + TG P+LL+D++ LD DKR + ++ Q+F T ++ + Sbjct: 293 VYYTEITGRKPVLLMDDVLLELDPDKRQKVTALLPPYD-QLFCTFLPGEPYERYRRSDTR 351 Query: 364 FMRISNHQ 371 I N + Sbjct: 352 VYFIENGE 359 >gi|56417217|ref|YP_154291.1| recombination protein F [Anaplasma marginale str. St. Maries] gi|56388449|gb|AAV87036.1| RECF protein [Anaplasma marginale str. St. Maries] Length = 371 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 109/374 (29%), Positives = 176/374 (47%), Gaps = 6/374 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 + R I+ + + FRNY L + +G+NG GKTNILEAIS LS G G R S Sbjct: 4 SPRSCIQSIKLCNFRNYTRAELESHGHSVVLLGENGSGKTNILEAISLLSKGPGLRNVSA 63 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 A + S + +S V + G A S+ + +++ R L I++ + L+ L Sbjct: 64 ACMQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLIDEKAG-LYSTLHNMLC 118 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I WL+P +D I ER RF DR+V D + ++ +E+ R R ++L E D + Sbjct: 119 IVWLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVN 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 W +S+E MA GV I R+ + L + + F + L + + +S Sbjct: 179 WLTSLENVMAASGVCIARMRLNALEILQKTMADNDINSPFLKFNIHLDSAV-FELLESQE 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 Y ++L + R D + T G H + DK + + STGEQK++L+ + L Sbjct: 238 HAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASDCSTGEQKILLLSLLL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A API+LLD+I +HLD + L + + D+G Q ++T D F+ L Sbjct: 298 TAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNFEGLERH 357 Query: 362 AKFMRISNHQALCI 375 +RI+++ + Sbjct: 358 FVRLRITDNSINPV 371 >gi|312621131|ref|YP_004022744.1| DNA replication and repair protein recf [Caldicellulosiruptor kronotskyensis 2002] gi|312201598|gb|ADQ44925.1| DNA replication and repair protein RecF [Caldicellulosiruptor kronotskyensis 2002] Length = 353 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 145/349 (41%), Gaps = 21/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + + FR Y F + + VG+N GKT++LEA+ F G+ F+ + D Sbjct: 1 MKIKSIYVENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCMCGKSFK-SRDIDA 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 S + ++E + + D + D+++ + + IND I+ + EL + Sbjct: 60 INFD-----SFYFKLEMLAEVGDTEYNVFCYVDKALDKRIMINDKKIKKLSELISTFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + RRRFLD V + P + ++ R + RN L Y Sbjct: 115 FFEPDATELIKHQPKLRRRFLDMEVTKLYPYMTKVYSEYHRALLSRNAFLK-SYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++LG I R E+IN LS + L L + Sbjct: 174 DVYDMQISQLGFLIFQKRQEVINKLSIEAQKIFSLVFENKSMLELKYMPSI-----IASN 228 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +EY K++ D T G HR D + DK I S G+ K+ + + LA Sbjct: 229 DKEYYKEIKKNIDKDLSFGYTTKGVHRDDFEI-LIDKKPAINFASEGQIKLAAISVVLAT 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 + L P+L+LD++ + LD KR L + ++ Q F+T + Sbjct: 288 SLLYPE-----PVLILDDVFSELDSFKRKNLVKFISQY--QSFVTSAED 329 >gi|255003571|ref|ZP_05278535.1| recombination protein F [Anaplasma marginale str. Puerto Rico] gi|255004698|ref|ZP_05279499.1| recombination protein F [Anaplasma marginale str. Virginia] Length = 371 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 109/374 (29%), Positives = 175/374 (46%), Gaps = 6/374 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 + R I+ + + FRNY L + +G NG GKTNILEAIS LS G G R S Sbjct: 4 SPRSCIQSIKLCNFRNYTRAELESHGHSVVLLGANGSGKTNILEAISLLSKGPGLRNVSA 63 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 A + S + +S V + G A S+ + +++ R L I++ + L+ L Sbjct: 64 ACMQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLIDEKAG-LYSTLHNMLC 118 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I WL+P +D I ER RF DR+V D + ++ +E+ R R ++L E D + Sbjct: 119 IVWLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVN 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 W +S+E MA GV I R+ + L + + F + L + + +S Sbjct: 179 WLTSLENVMAASGVCIARMRLNALEILQKTMADNDINSPFLKFNIHLDSAV-FELLESQE 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 Y ++L + R D + T G H + DK + + STGEQK++L+ + L Sbjct: 238 HAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASDCSTGEQKILLLSLLL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A API+LLD+I +HLD + L + + D+G Q ++T D F+ L Sbjct: 298 TAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNFEGLERH 357 Query: 362 AKFMRISNHQALCI 375 +RI+++ + Sbjct: 358 FVRLRITDNSINPV 371 >gi|303233458|ref|ZP_07320126.1| DNA replication and repair protein RecF [Atopobium vaginae PB189-T1-4] gi|302480466|gb|EFL43558.1| DNA replication and repair protein RecF [Atopobium vaginae PB189-T1-4] Length = 428 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 146/396 (36%), Gaps = 38/396 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + ++N AS L F TI G N GKTNI+EAI + G F+ A Sbjct: 31 LQQLQLYNWKNIASATLEFSPAATILYGPNAAGKTNIIEAIHQCTTGVSFKHTPAAACIS 90 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRD----------DRSVRCLQINDVVIRVVDEL 116 G+ +T ++ ++ K+E R+ R L N R L Sbjct: 91 QGTSQCSATATLIDAAR-TITLACKVEAPTPIASTENVPTQRAKRTLFANGKPARPYT-L 148 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 + + P + + RR D I ++ + + RN LL +G Sbjct: 149 SAYAPSIVFTPDDLQCIKQSAKARRDEFDMFAKTITREYQHIYTTYTHCIEQRNTLLKQG 208 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-- 234 ++ + + AR+ ++ L + I + + P L+ Sbjct: 209 -ISPDVRAAWDESFMRGAAALMYARMRLLERLYTHITDVYRTI-APSETLTYQYMPSWLR 266 Query: 235 ---------------KFDQSFCALKEEYAKKLF----DGRKMDSMSRRTLIGPHRSDLIV 275 F K+E + +++ +TL+GP R D+ Sbjct: 267 LPAHVAPTISKLACAPFLPGQTPTKDELYTLFSTLQPQVQNLEAQRMQTLLGPQRDDVQF 326 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 S G+Q+ +++ I +A L GF PILLLD++ + LDE +RN +F Sbjct: 327 FINGMD-ARTCASQGQQRSIILAIKIAQVLLTHEIHGFYPILLLDDVMSELDELRRNTIF 385 Query: 336 RIVTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNH 370 ++ G Q +T T+ F + AK + + + Sbjct: 386 SLI-HNGIQAIITTTNLGYFLPEIQARAKVVDLYDA 420 >gi|222475581|ref|YP_002563998.1| RECF protein (recF) [Anaplasma marginale str. Florida] gi|222419719|gb|ACM49742.1| RECF protein (recF) [Anaplasma marginale str. Florida] Length = 371 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 109/374 (29%), Positives = 177/374 (47%), Gaps = 6/374 (1%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 + R I+ + + FRNY L + +G+NG GKTNILEAIS LS G G R S Sbjct: 4 SPRSCIQSIKLCNFRNYTRAELESHGHSVVLLGENGSGKTNILEAISLLSKGPGLRNVSA 63 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 A + S + +S V + G A S+ + +++ R L I++ + L+ L Sbjct: 64 ACMQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLIDEKAG-LYSTLHNMLC 118 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 I WL+P +D I ER RF DR+V D + ++ +E+ R R ++L E D + Sbjct: 119 IVWLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVN 178 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 W +S+E MA GV I R+ + L + + F + L + + +S Sbjct: 179 WLTSLENVMAASGVCIARMRLNALEILQKTMADNDINSPFLKFNIHLDSAV-FELLESQE 237 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 Y ++L + R D + T G H + DK + ++ STGEQK++L+ + L Sbjct: 238 HAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASNCSTGEQKILLLSLLL 297 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A API+LLD+I +HLD + L + + D+G Q ++T D F+ L Sbjct: 298 TAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNFEGLERH 357 Query: 362 AKFMRISNHQALCI 375 +RI+++ + Sbjct: 358 FVRLRITDNSINPV 371 >gi|160946607|ref|ZP_02093810.1| hypothetical protein PEPMIC_00565 [Parvimonas micra ATCC 33270] gi|158446991|gb|EDP23986.1| hypothetical protein PEPMIC_00565 [Parvimonas micra ATCC 33270] Length = 366 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 81/353 (22%), Positives = 158/353 (44%), Gaps = 13/353 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++++ FRN + F +FVG NG+GKTN+LEAI FR+A D Sbjct: 1 MIVEKIHLTNFRNLKDISFEFKENINVFVGKNGIGKTNVLEAIYISLVASSFRQAKQEDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G F +V+ K+ D + +I+D+ I+ V+EL + Sbjct: 61 ISFGEN-----FTKVDTFVREKGFENKISFLYTDDKKKVFKIDDIKIKSVNELYDFSNVI 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---S 180 P +I + RR F D + + +++++ + ++ RN LL Sbjct: 116 GFFPDELKIITESPNFRRNFFDSFIMKMTKGYKQKLNLYRNVIFRRNLLLKGMNLSSFYK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +++ ++A L +I++ R ++I+ ++ + Q+ + + + L Sbjct: 176 QEMNALTKKLALLCYEISMERKKLIDLINKEVNFIHQQLSGETLYIEYESILSNHKRSEN 235 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 LKE + K+DS ++ T G H+ + + + S G+++ +++ I Sbjct: 236 ECLKE-ILENFSKSYKIDSENKITSFGIHKENFKF-ILNGNDAKSFSSQGQKRNIIITIK 293 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353 + + G PI+LLD++ + LDED+R + +TD Q+F+T TDKS Sbjct: 294 MCQKNIFEEYKGVKPIILLDDLFSELDEDRRYEILEYLTDN--QVFITTTDKS 344 >gi|33241177|ref|NP_876119.1| recombinational DNA repair ATPase (RecF pathway) [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238707|gb|AAQ00772.1| Recombinational DNA repair ATPase (RecF pathway) [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 355 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 76/354 (21%), Positives = 151/354 (42%), Gaps = 17/354 (4%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 + + + +G NG GK+N+LEA+ L R R +S D+ G+ + Sbjct: 1 MKLTEKRLLVIGPNGAGKSNLLEAVELLGSLRSHRSSSDQDLIHWGASEAVVRAITSD-- 58 Query: 83 EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142 + ++LE R + + + R +D L LR + G + RR Sbjct: 59 ----EEKLQLEFRKLGGRKASRNGKSLARQLD-LLGSLRCVGFSALDLSLVRGEPLLRRN 113 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-----SWCSSIEAQMAELGVKI 197 +LDR+V ++P + + F RL+R RN+L + S + + ++QMA + +I Sbjct: 114 WLDRVVQQLEPVYGDLITRFNRLLRQRNQLWRQWKDRSKDEHYALLDAFDSQMALVSTRI 173 Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCALKEEYAKKLFDGR 255 + R+ + L + + ++ + L L + ++ A + K+L + R Sbjct: 174 HRRRIRALKHLGPIAATWQKRLSKGKEDLELKYHPGSILEGEEEELAWRLTIEKQLAEQR 233 Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315 + +GPHR +++ + GS G+Q+ +++ + LA + P Sbjct: 234 NEEERLGICKVGPHRDEVLF-LLNGVPARKFGSAGQQRTLVLALKLAELEFVGEMYKDPP 292 Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRIS 368 ILLLD++ A LD ++ L V D Q ++ T F+ + ++ + ++ Sbjct: 293 ILLLDDVFAELDPIRQLLLLEAVGD-NHQCLISATHLDAFEGDWRKNSQILELA 345 >gi|154250041|ref|YP_001410866.1| DNA replication and repair protein RecF [Fervidobacterium nodosum Rt17-B1] gi|154153977|gb|ABS61209.1| DNA replication and repair protein RecF [Fervidobacterium nodosum Rt17-B1] Length = 339 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 26/349 (7%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ I+ L + FR ++ + F + G NG GKT+ILEAI++LS R FR Sbjct: 5 RMLIESLRLRNFRCFSEYEVNFKDGINVIYGPNGAGKTSILEAIAYLSNPRSFRGGRDYH 64 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + G+ +FF ++ DI++ ++ + + + ++ ++ ++ + Sbjct: 65 LIKFGT-NFFEVSGKIVSGGKKHDITVIYKSDETKKEKIAYLDGNKVKRFRDIQEVFIAI 123 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + G +RR F D + +D + + ++E+L+ RN LL E D Sbjct: 124 PFSFKDYLMIDGYPSQRREFFDEIFSLLDLEYYEILRNYEKLLDERNALLAEENVDREKV 183 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + +M L KI R MIN LS + P K+ G Sbjct: 184 LKLANEMQPLAEKIVEKREIMINELSKYLD--------PMFKVEYVSEFKG--------- 226 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K + D D R T +GPH D V Y + I S G+++++ + + +A Sbjct: 227 -----KNIADYIDEDIEKRVTTVGPHTHDDYVFYYNGYIAKYFASEGQKRLLYLSLIIAF 281 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +LI T + P+ L D+ LD L + ++++ Q+ + G Sbjct: 282 KKLIEETKLYEPVFLFDDPGNVLDPH---LLEKFISNLSGQVIIAGLSP 327 >gi|328951554|ref|YP_004368889.1| DNA replication and repair protein recF [Marinithermus hydrothermalis DSM 14884] gi|328451878|gb|AEB12779.1| DNA replication and repair protein recF [Marinithermus hydrothermalis DSM 14884] Length = 343 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 153/366 (41%), Gaps = 27/366 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ FRN S L VG N GKTN+LEA+ L+ G R A ++ Sbjct: 1 MRLLRFRQRHFRNLRSSELTLAGGPLAVVGANAQGKTNLLEALY-LALGGEVRGA-LSER 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G FA E G ++ E R + R +++N+ + EL ++ W Sbjct: 59 VRFGEREA-QLFAEAETELGR----VRFEHRFGPAGREVKVNEAPA-SLRELAEYPGAVW 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G ERRR++D ++ R+R + +ER +R RN LL G + + Sbjct: 113 VRPEDTALVLGGPEERRRWMDLLLTRFSARYRSLLSAYERALRQRNALLK-GQGRLAGLA 171 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A G +I R ++ L L E ++ ++L+L Sbjct: 172 AWNQKLATYGSEILQLRRRLLTRLEPLAQEAYRELAPGTLELALR----------ETVTP 221 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E Y + L + + TL GPHR DL + S GE + + + + LA Sbjct: 222 EGYLEALETHLQEELERGATLFGPHRDDLKLLLNGLEAP-QFASRGEARAIALALRLAEH 280 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 RL+ G AP+LL+D+ +A LD +R AL + Q +TGTD E Sbjct: 281 RLLWTHHGEAPVLLVDDFTAELDARRRTALLAYAQALP-QAILTGTDP------PEGLPV 333 Query: 365 MRISNH 370 + I Sbjct: 334 VHIEGG 339 >gi|206901870|ref|YP_002251259.1| DNA replication and repair protein RecF [Dictyoglomus thermophilum H-6-12] gi|206740973|gb|ACI20031.1| DNA replication and repair protein RecF [Dictyoglomus thermophilum H-6-12] Length = 359 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 160/371 (43%), Gaps = 19/371 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + FRN +L L F IF G+N GKTNILE+I FL G+ FR + ++ Sbjct: 1 MRLIDLRVVNFRNLKNLNLNFFD-VNIFYGENAQGKTNILESIYFLFSGKSFRTKNEREI 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G SF+ + G + ++ LE+ + ++IN ++ ++ I Sbjct: 60 IRWGEESFY-----LRGDVNWQNQNLVLESALSELEKKIKINQKNLKRYRDMVFLFPIIL 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 F +RR L+R + + ++ + + ++ + + RN L G S Sbjct: 115 FSQEEIENFKKGPSQRRYLLNRFISTLSYKYHKALSEYYKTLYQRNLTLKSGRD----VS 170 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + +LG I R+ ++ + S + E V + L + S + Sbjct: 171 VWNSTLIKLGSYILFQRLSIVEEIKSKVKE-VSNKLLEKNFLEIEYISTVPLGDSEEEIA 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT---IAHGSTGEQKVVLVGIFL 301 + + L + TL+GPHR D+++ I +GS GE+K+ + L Sbjct: 230 KNFEVMLKAKEAEEKKKGYTLVGPHRDDIVLRIIRDDIQYDLRKYGSAGEKKLGYIIWKL 289 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A ++S PILL+D++ LDE K+ ++ + D QIF+T + L + Sbjct: 290 AQVEILSEKRKEKPILLIDDLFGDLDEYKQKRVWDGIKDF--QIFLTT--PIKIEFLRDF 345 Query: 362 AKFMRISNHQA 372 F+ + N + Sbjct: 346 PHFL-VKNGEV 355 >gi|148284348|ref|YP_001248438.1| recombination protein F [Orientia tsutsugamushi str. Boryong] gi|146739787|emb|CAM79662.1| DNA replication and repair protein [Orientia tsutsugamushi str. Boryong] Length = 383 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 169/372 (45%), Gaps = 13/372 (3%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L + +RN L + + +G NG GKTN+LE+IS +PGRG R A Y+D+ Sbjct: 14 RITKLVLHNYRNLTELTVSPKCDKILIIGKNGSGKTNLLESISLFAPGRGLRGAKYSDIL 73 Query: 66 RIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 R + ++ A + + + I + + R +++ND I + Sbjct: 74 RKEANSSSSSSNCHNTYSQWIAEITLQTAINIVKISTNYYQNTTKRNIKLNDNTI-TSHK 132 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L + + + + P M+ +F + +RR+ LDR+V+ D +H R+ +E +R R LL Sbjct: 133 LLELVNMICITPQMESVFLNGATQRRKLLDRIVYLFDYKHAERVNKYEYYLRERMILLRS 192 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 + W + IE +A + V+I R I L + E FP +KL + + Sbjct: 193 NSSQTRWINVIENCLASISVEIASCRYNAIKQLQLYLDEIDA--PFPKVKLDIQCQIAEL 250 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 Q L E + + R +D S ++ G HRSD V + K STGEQK + Sbjct: 251 CLQQSPKLLELINSRFCNSRTIDGNSGKSNFGVHRSDFKVIHSVKNQLAQFCSTGEQKAL 310 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+ + +A PILLLDE+ HLD +KR L + +T Q +++ T+ Sbjct: 311 LISLLIAQMLQSRKNYNRFPILLLDELFIHLDIEKRQYLAKFLTQFPVQCWISSTEPDDA 370 Query: 356 DSLNETAKFMRI 367 + + + + Sbjct: 371 NLFSNNCDIVNL 382 >gi|226356387|ref|YP_002786127.1| recombination protein F [Deinococcus deserti VCD115] gi|259563361|sp|C1CW06|RECF_DEIDV RecName: Full=DNA replication and repair protein recF gi|226318377|gb|ACO46373.1| putative DNA replication and repair protein RecF [Deinococcus deserti VCD115] Length = 363 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 91/359 (25%), Positives = 148/359 (41%), Gaps = 23/359 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ L+ +RN A L F A T G+NG GKTN+LEA G + Sbjct: 4 VQLESLSTLNYRNLAPCTLSFPAGVTGVFGENGAGKTNLLEAAYLALTGLT-DVTRLEQL 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + A +E L+ + L R R L+++ V +R D W Sbjct: 63 VQSGEGEAYVR-ADLESGGSLSIQEVGL----GRGRRQLKVDGVRVRAGDLPRG--SAVW 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 + P + G RR FLD ++ + R+ +++ ++R + RN L G W Sbjct: 116 IRPEDSELVFGSPSGRRNFLDALLSRLSARYAQQLARYDRTVSQRNAALRSG---EEWAM 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + + +LG I + R + LS L E + +L S Sbjct: 173 HVWDDALVKLGSDIMLFRRRALTRLSELAAEANE---------ALGSRKPLVLGLSESTT 223 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E YA L R + T GPHR DL + D T + S GE + + + + A Sbjct: 224 PETYAHDLRSRRAEELARGSTATGPHRDDLTMTLGDFPAT-EYASRGEGRTIALALRRAE 282 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 L++ G P+LL+D+ SA LD +R L + + Q +TGT+++ +L A Sbjct: 283 LELLAERFGEKPVLLIDDFSAELDPTRRAFLLDLAASVP-QAIVTGTEQAPGAALTLRA 340 >gi|37521974|ref|NP_925351.1| recombination protein F [Gloeobacter violaceus PCC 7421] gi|51316323|sp|Q7NHY0|RECF_GLOVI RecName: Full=DNA replication and repair protein recF gi|35212973|dbj|BAC90346.1| DNA repair and genetic recombination protein [Gloeobacter violaceus PCC 7421] Length = 375 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 161/376 (42%), Gaps = 12/376 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + +FRNYA L + TI VGDN GK+N+LEA+ L+ GR R ++ Sbjct: 1 MFLRSVQLHDFRNYAEADLELTSPKTILVGDNAQGKSNLLEAVQLLATGRSTRALRDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G A VE + ++ + L R+VR + R E +L Sbjct: 61 IARGKEQA-RVAATVERLGDTVELEMILRAGKRRTVR---VGGETRRTQVEALGYLHCVS 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + G RR +LD ++ ++P + + F + + RN LL + Sbjct: 117 FSSLDLDLVRGAPETRRDWLDGILLQLEPVYTNVLAQFVQALHQRNALLRSTELSPDALA 176 Query: 185 S----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + + R +I L+ L + + ++ F+Q Sbjct: 177 EQLPCWDDLLVRAATPVMRRRHRLIERLAPLARRWHGSISGGRETFAVRYQPQISFEQED 236 Query: 241 C-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 ++++ + L + R ++ +L+GPHR ++ + D+ GS G+Q+ +++ + Sbjct: 237 AQSVQQALQELLKEKRTLEGRRGTSLVGPHRDEVDLSI-DEIPARQFGSQGQQRTLVLAL 295 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358 LA L+ TG P+LLLD++ A LD +++ L + + Q +T T S+FDS Sbjct: 296 KLAELELLEQVTGEVPLLLLDDVLAELDLHRQDQLLGAIQE-RVQTIVTTTHLSLFDSQW 354 Query: 359 NETAKFMRISNHQALC 374 ++A + I + Sbjct: 355 LQSATVLTIEKGRIGS 370 >gi|312126265|ref|YP_003991139.1| DNA replication and repair protein recf [Caldicellulosiruptor hydrothermalis 108] gi|311776284|gb|ADQ05770.1| DNA replication and repair protein RecF [Caldicellulosiruptor hydrothermalis 108] Length = 353 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 148/349 (42%), Gaps = 21/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + I FR Y F + + VG+N GKT++LEA+ F G+ F+ + D Sbjct: 1 MKIKNIYIENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCICGKSFK-SRDVDA 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123 S + ++E + +I + D+++ + + IND I + EL + Sbjct: 60 INFD-----SYYFKLEMSAEVGNIEYNVFCYVDKALDKRIMINDKKINRLSELISLFKFV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P R+ RRRFLD V + P + +++R + RN L Y Sbjct: 115 FFEPDTTRLIKHQPKLRRRFLDMEVAKLYPYMTKVYSEYQRALHSRNAFLK-SYDKKDII 173 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + Q+++LG I R E+I+ LS + L L + Sbjct: 174 DVYDVQISQLGFLIFQKRQEVIDRLSIEAQKIFSYVFENKSLLELKYMPSIN-----ASS 228 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +EEY K++ D T G HR D + K I S G+ K+ V + L+ Sbjct: 229 EEEYYKEMKKHLVKDLSLGYTTKGIHRDDFEILIDGKP-AIDFASEGQIKLAAVSVVLSS 287 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 A L + P+L+LD++ + LD+ KR L + ++ Q F+T + Sbjct: 288 ALLYTE-----PVLILDDVFSELDKFKRRNLIKFLSQY--QSFVTSAED 329 >gi|189183858|ref|YP_001937643.1| recombination protein F [Orientia tsutsugamushi str. Ikeda] gi|189180629|dbj|BAG40409.1| RecF protein [Orientia tsutsugamushi str. Ikeda] Length = 378 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 98/372 (26%), Positives = 169/372 (45%), Gaps = 13/372 (3%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I L + +RN L + + +G NG GKTN+LE+IS +PGRG R A Y+D+ Sbjct: 9 RITKLVLHNYRNLTELIVSPQCDKILIIGKNGSGKTNLLESISLFAPGRGLRGAKYSDIL 68 Query: 66 RIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 R + ++ A + + + I + + R +++ND I + Sbjct: 69 RKEANLSSNSSNCHNAYSQWIAEITLQTAINIVKISTNYYQNTTKRNIKLNDNTI-TSHK 127 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L + + + + P M+ +F + +RR+ LDR+V+ D +H R+ +E +R R LL Sbjct: 128 LLELVNMICITPQMESVFLNGATQRRKLLDRIVYLFDYKHAERVNKYEYYLRERMILLRS 187 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 + W + IE +A + ++I R I L + E FP +KL + + Sbjct: 188 NSSQTRWINVIENCLASISLEIASCRYNAIKQLQLYLDEIDA--PFPKVKLDIQCQIAEL 245 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 + Q L E + + R +D S ++ G HRSD V + K STGEQK + Sbjct: 246 YLQQSPKLLELINSRFCNSRTIDCNSGKSNFGVHRSDFKVIHSVKNQLAQFCSTGEQKAL 305 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L+ + +A PILLLDE+ HLD +KR L + + Q +++ T+ Sbjct: 306 LISLLIAQMLQSRKNYNRFPILLLDELFIHLDIEKRQYLAKFLAQFPVQCWISSTELDDA 365 Query: 356 DSLNETAKFMRI 367 + + + + Sbjct: 366 NLFSNNCDIVNL 377 >gi|53802865|ref|YP_115418.1| DNA replication and repair protein RecF [Methylococcus capsulatus str. Bath] gi|81680705|sp|Q602N2|RECF_METCA RecName: Full=DNA replication and repair protein recF gi|53756626|gb|AAU90917.1| DNA replication and repair protein RecF [Methylococcus capsulatus str. Bath] Length = 359 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 142/370 (38%), Gaps = 17/370 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I++ RN S L + G NG GKT++LEAI LS G+ FR + Sbjct: 1 MALLKLDIADVRNIESASLSPGEGLNLLFGANGSGKTSLLEAIYLLSRGKSFRSPQSGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R P V G G I + R RS + +++ +L + Sbjct: 61 IRFDRPCL-----TVSGSIGRPGAGIAVGVRLGRSEKEVRVGGRSCDSSAQLIRLFPAVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P+ + G RR+ LD VF ++ + + F R + RN +L G S + Sbjct: 116 IHPASVALLEGPPRWRRQMLDWGVFHVEQGYLDLLRRFSRTLEQRNAVLR-GDAPGSSLA 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A G I R ++ + E V + L + Sbjct: 175 AWSGELARWGTMIAELRSSYLDRIRMHFGEMVSAL-LGRTDVELVVRPGWR-------AG 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 YA L + D T GP + D V + + S G+ K++ + LA A Sbjct: 227 WSYADALAASQPTDRRLGYTEPGPQKGDFAVLVGGRP-ARDYLSRGQLKLLTYALLLAQA 285 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT--GTDKSVFDSLNETA 362 L+ LL+D+I++ LD + L +V G Q F+T G + V + TA Sbjct: 286 GLLEADQPGRVCLLVDDIASELDSRNQERLLSLVKSTGLQSFVTFSGATQGVAAVVGRTA 345 Query: 363 KFMRISNHQA 372 + + + Sbjct: 346 RVFHVEQGRI 355 >gi|119953227|ref|YP_945436.1| DNA replication and repair protein RecF [Borrelia turicatae 91E135] gi|119861998|gb|AAX17766.1| DNA replication and repair protein RecF [Borrelia turicatae 91E135] Length = 358 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 151/371 (40%), Gaps = 21/371 (5%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++ IK + F+N + + FD + F G+NG GKTNIL+AI L+ F + + Sbjct: 3 KM-IKKVEFFNFKNIENRVINFDFNNIYFCGENGSGKTNILDAIYCLAFASSFLVRTDRE 61 Query: 64 VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + G F F EG G +S+ + +++N+ +++ L ++ Sbjct: 62 LITYGKTEFYLKCFYNTEGKAGEIGLSL------RNGKKEIKVNNSIVKDRKNLILNIPS 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 G ++R F D+ + + + + + ++++ RN +L +G D Sbjct: 116 VIFSNYDTDFIIGAPAKKRWFFDQAISLVSLSYLDSLRKYRKILQQRNLILRQGNKD--L 173 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + +I R I Y L + K C+ Sbjct: 174 LKVYNETFVDFAFEITKMRENFIKHFYEFFKYYYSFIFDVSYSLEIKYLPSVK-----CS 228 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 ++E+ + L + + S TLIGPHR DL + + H STG+ + + + L Sbjct: 229 KRDEFLQTLLLKEQDELYSESTLIGPHR-DLYEILSGERVFTHHSSTGQIRALALIYRLI 287 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + + G APILL D++ LD +R +F I+ SQ F T D + + + Sbjct: 288 QVIMFNKQFGIAPILLFDDVFLELDSMRRKRIFDILPK-DSQCFFTFLDDCY--DIKQDS 344 Query: 363 KFM--RISNHQ 371 KF+ RI N + Sbjct: 345 KFIVYRIKNGR 355 >gi|146329283|ref|YP_001209128.1| DNA replication and repair protein RecF [Dichelobacter nodosus VCS1703A] gi|146232753|gb|ABQ13731.1| DNA replication and repair protein RecF [Dichelobacter nodosus VCS1703A] Length = 356 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 159/372 (42%), Gaps = 18/372 (4%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++I L FR+ S L F + I G G GKT +LEA+ L G+ FR A Sbjct: 1 MRIDSLQTQHFRHLKSAAALAFHPKLNIISGKTGSGKTALLEALYCLGRGKSFRTAQVRH 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + S+F A + +G + ++ R R ++++ + + L L + Sbjct: 61 MIAY-QQSYFRLIAELSDQDGNYFLGMERRARGYR----VRLDGQTLNGLSALAALLPVH 115 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + + + ERRRFLD +F D ++ ++GRNR L EG+ D + Sbjct: 116 IVYADHFSLLTAAPQERRRFLDYGLFFDDAAFLPLWQRYQYALKGRNRALMEGWQD-HYI 174 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S +AE KI+I R + + L + + +Y H L L ++D+ + Sbjct: 175 RSWHPLLAETAEKIDILRRDYLKRLENRLNQY-------HAHLGGLQTLRIRYDRGWHG- 226 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 + + L + D + T G HR+D + D I S G+QK VL + L+ Sbjct: 227 --DLRQTLDENLARDQQIKYTRDGIHRADWRLFCEDYDIAHTF-SRGQQKTVLCALILSQ 283 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 A I + P++L+D+I+A LD +++ L R + +Q+F+T + + + + Sbjct: 284 ADEIRARSKKVPVILVDDITAELDIERQQLLLRFLQASEAQLFITALEAKLLAISDSDCE 343 Query: 364 FMRISNHQALCI 375 + I Sbjct: 344 QFYLDRGHIQQI 355 >gi|229083318|ref|ZP_04215680.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44] gi|228699993|gb|EEL52616.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44] Length = 245 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 9/244 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MYITELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R + +++G + S+ LE + + ++N + + + + + + Sbjct: 61 IRWDED-----YGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVM 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180 P + G RRRFLD + I P + + +++++ RN LL + + Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + Q+ E G KI R E ++ L + + +L + +S Sbjct: 176 AMLDVFTIQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235 Query: 241 CALK 244 + Sbjct: 236 DLYE 239 >gi|254430013|ref|ZP_05043720.1| RecF/RecN/SMC N terminal domain, putative [Alcanivorax sp. DG881] gi|196196182|gb|EDX91141.1| RecF/RecN/SMC N terminal domain, putative [Alcanivorax sp. DG881] Length = 369 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 160/374 (42%), Gaps = 23/374 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS-YADVT 65 + L +S+FRNY S + + +GDNG GKT++LEAI F+ G R + + Sbjct: 2 LSRLQLSDFRNYGSAEVDLSPSLNVILGDNGSGKTSLLEAIYFIGSGGRSFRGGRLSRLV 61 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 R G+ + + +A V E L + + R + ++++ + + E+ L + L Sbjct: 62 RDGAEAA-TLYAEVLAAEELHRLGV---RRTPGGIDAIKLDGQTPKALSEVAALLPVLAL 117 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P+ + G S RRRF+D +F ++ + ++ RN LL G Sbjct: 118 HPTSVELVFGSSQLRRRFMDWGMFHVEHQFMPVWRAGSAALKQRNALLRTGRPSQRELGF 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 Q+A+ +I R + AL + E + P +K+ L + D+S Sbjct: 178 WNQQLAQTSDRIEGLRRSYLAALQRGLDEVL-VVLAPELKIRLRLQTGLQKDES------ 230 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 Y + L + D + G HRSD+ ++ + S G+ K+V G+ LA Sbjct: 231 -YGQALDRLQTDDLRRGFSQAGFHRSDIRIE-SHGVVARDRLSRGQAKLVAYGMVLAQLP 288 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET---- 361 LIS G LL+D+++A LDE+ RN L + G Q +T D + ++ Sbjct: 289 LISQA-GKVCTLLVDDLAAELDEEHRNQLLGYLATTGHQTLITALDMPQWAAIVNDNNAL 347 Query: 362 ----AKFMRISNHQ 371 +K + + + Sbjct: 348 QAVESKMFHVEHGK 361 >gi|187918304|ref|YP_001883867.1| DNA replication and repair protein RecF [Borrelia hermsii DAH] gi|119861152|gb|AAX16947.1| DNA replication and repair protein RecF [Borrelia hermsii DAH] Length = 355 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 81/366 (22%), Positives = 146/366 (39%), Gaps = 14/366 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + F+N + + FD + F G+NG GKTNIL+AI L+ F + ++ Sbjct: 2 IKKIEFFNFKNIKNQVINFDFNNIYFYGENGSGKTNILDAIYCLAFASSFLVNTDRELIT 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F+ + E A+IS+ + +++N+ +I+ +L ++ Sbjct: 62 YGKTEFY-LKCFYKTREKDAEISLSF----RNGKKEIKVNNSLIKDRKDLILNIPAIVFS 116 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 G ++R F D+ + + + + + R+++ RN +L +G D Sbjct: 117 NYDTDFIIGEPAKKRWFFDQAISLVSLSYLDSLRKYRRILKQRNLILKQGNRD--LLKVY 174 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++I R I Y L + + ++E Sbjct: 175 NEAFVDYALEIIRMRENFIKHFYEFFKYYYSLIFDVSYNLEIKYLPSVAY-----CGRDE 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + LF K + ++ TLIGPHR DL + + H STGE + + + L + Sbjct: 230 FLHLLFLKEKDEFLNESTLIGPHR-DLYEILSGERVFTHHSSTGETRALALIYRLVQVII 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + G APILL D++ LD +R +F I+ SQ F T D+ + Sbjct: 289 FNKRFGIAPILLFDDVFLELDSTRRKRVFDILPK-DSQCFFTFVDECYDIKQKSNFIVYK 347 Query: 367 ISNHQA 372 + N + Sbjct: 348 VKNGKI 353 >gi|217966464|ref|YP_002351970.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM 6724] gi|217335563|gb|ACK41356.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM 6724] Length = 340 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 75/349 (21%), Positives = 140/349 (40%), Gaps = 26/349 (7%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ I+ + + FRN++ + F + G NG GKT+ILEA+++LS R FR A Sbjct: 5 RMVIESIYLRNFRNFSDFKTNFKDGINVIYGPNGSGKTSILEAVAYLSNPRSFRGARDHQ 64 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + ++G FF ++ +I+I + + + ++ ++ ++ + Sbjct: 65 LIKLGEK-FFEINGKILSGNESHEITISYHHDEIKKEKIAYLDGFKVKRFRDIQEIFIAI 123 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + G + +RR F D + +D + + ++E+L+ RN LL E D + Sbjct: 124 PFSFKDYAMIDGYATQRRDFFDDIFSLLDLEYYEILRNYEKLLDERNDLLKEENIDRDYV 183 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + +M L KI R MI LS + + E K Sbjct: 184 IYLAKEMQPLAEKIVEKRETMIKELSKYLDPMFKVEYISEFK------------------ 225 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 K + D + D T +GPH D Y S G+++++ + + LA Sbjct: 226 ----GKNIVDYIEEDIARGITTVGPHVHDDYTFYYKGNPAKYFASEGQKRLLYLSLVLAF 281 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +LI T + P+ L D+ LD L + ++ + Q+ + Sbjct: 282 RKLIEETKLYEPVFLFDDPVNVLDPH---LLEKFISHLSGQVIIASLSP 327 >gi|57238782|ref|YP_179918.1| recombination protein F [Ehrlichia ruminantium str. Welgevonden] gi|58578707|ref|YP_196919.1| recombination protein F [Ehrlichia ruminantium str. Welgevonden] gi|57160861|emb|CAH57763.1| putative DNA replication and repair protein RecF [Ehrlichia ruminantium str. Welgevonden] gi|58417333|emb|CAI26537.1| DNA replication and repair protein recF [Ehrlichia ruminantium str. Welgevonden] Length = 372 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 105/371 (28%), Positives = 172/371 (46%), Gaps = 10/371 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + FRNY ++ L + + +G NG GKTNILEAIS LS G G R + + Sbjct: 9 IQNLRLINFRNYLNIELDTSGKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNMESMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S +S + + I I + + L N L+K + + WL+ Sbjct: 69 SSSDLPWSISYHIHNQNSIYPIVI---AKGNNKRSILISNKS--HNYITLHKIISVVWLI 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D IF ER +F DR+V D + +I + + + RN+LL D+ W SS+ Sbjct: 124 PQLDHIFLKSQSERLKFFDRVVHIFDTNYTSYIIKYNKAKQDRNKLLRSNSVDNFWLSSL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E+ MAE G+KI R+ ++ L +++ + +F + + + D E Sbjct: 184 ESIMAENGIKIAQIRLNVVQILQNVLSKNNLSNSFFKAVIEIKSQVFPLLDNENS--IEN 241 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Y + L R DS + G H ++ + + +K + + STGEQK++L+ + L+ Sbjct: 242 YKENLQKSRARDSSTNLVNFGVHNDNVQIFHLEKNLIASCCSTGEQKILLLSLVLSSVLA 301 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364 TG PILLLD+I +HLD + L + I Q+++T D + F E KF Sbjct: 302 -KQDTGEYPILLLDDIMSHLDVYHQEKLLETIVSIKCQVWITDIDLKQQNFTKYKEHFKF 360 Query: 365 MRISNHQALCI 375 + ++ I Sbjct: 361 FHVGDNNINSI 371 >gi|15806109|ref|NP_294813.1| recombination protein F [Deinococcus radiodurans R1] gi|13959503|sp|Q9RVE0|RECF_DEIRA RecName: Full=DNA replication and repair protein recF gi|126031361|pdb|2O5V|A Chain A, Recombination Mediator Recf gi|6458823|gb|AAF10663.1|AE001959_3 recF protein [Deinococcus radiodurans R1] Length = 359 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 151/363 (41%), Gaps = 25/363 (6%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ L+ +RN A L F T G+NG GKTN+LEA G+ Sbjct: 2 GDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQT-DAPRIE 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + + G + R + +G +SI+ E R R L+++ V R D Sbjct: 61 QLIQAGETEA---YVRADLQQG-GSLSIQ-EVGLGRGRRQLKVDGVRARTGDLPRG--GA 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 W+ P + G RR +LD ++ + R+ ++ +ER + RN L G W Sbjct: 114 VWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQRNAALRGG---EEW 170 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQSF 240 + + +LG +I + R + L L E Q + + L+LT Sbjct: 171 AMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLT----------E 220 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E YA L R + T+ GPHR DL++ D + + S GE + V + + Sbjct: 221 STSPETYAADLRGRRAEELARGSTVTGPHRDDLLLTLGDFPAS-DYASRGEGRTVALALR 279 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 A L+ G P+LLLD+ +A LD +R L + + Q +TGT+ + +L Sbjct: 280 RAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-QAIVTGTELAPGAALTL 338 Query: 361 TAK 363 A+ Sbjct: 339 RAQ 341 >gi|58616769|ref|YP_195968.1| recombination protein F [Ehrlichia ruminantium str. Gardel] gi|58416381|emb|CAI27494.1| DNA replication and repair protein recF [Ehrlichia ruminantium str. Gardel] Length = 372 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 174/368 (47%), Gaps = 10/368 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L + FRNY ++ L ++ + +G NG GKTNILEAIS LS G G R S + Sbjct: 9 IQNLRLINFRNYLNIELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVSMESMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S +S + + I I + + RS+ N I L+K + + WL+ Sbjct: 69 SSSDLPWSVSYHIHNQNSIYPIVI-AKGNNKRSILISNKNHNYIT----LHKIISVVWLI 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D IF ER +F DR+V D + +I + + + RN+LL D+ W SS+ Sbjct: 124 PQLDHIFLKSQSERLKFFDRVVHIFDTNYTSYIIKYNKAKQDRNKLLRSNSVDNFWLSSL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E+ MAE G+KI R+ ++ L +++ + +F + + + D E Sbjct: 184 ESIMAENGIKIAQIRLNVVQILQNVLSKNNLSNSFFKAVIEIKSQVFPLLDNENS--IEN 241 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Y + L R DS + G H ++ + + +K + STGEQK++L+ + L+ Sbjct: 242 YKENLQKSRARDSSTNLVNFGVHNDNVQIFHLEKNLIANCCSTGEQKILLLSLVLSSVLA 301 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364 TG PILLLD+I +HLD + L + I Q+++T D + F E KF Sbjct: 302 -KQDTGEYPILLLDDIMSHLDVYHQEKLLETIVSIKCQVWITDIDLKQQNFTKYKEHFKF 360 Query: 365 MRISNHQA 372 + ++ Sbjct: 361 FHVGDNHI 368 >gi|217967931|ref|YP_002353437.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM 6724] gi|217337030|gb|ACK42823.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM 6724] Length = 359 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 155/372 (41%), Gaps = 19/372 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + FRN +L L F IF G+N GKTNILE I FL G+ FR + ++ Sbjct: 1 MRLIDLKVINFRNLKNLSLNFFD-VNIFYGENAQGKTNILEGIYFLFSGKSFRTKNEKEI 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G SF+ ++G ++ LET + ++IN ++ ++ I Sbjct: 60 IRWGEESFY-----LKGNVDWQSQNLILETALSGEEKRIKINQKNLKRYRDMVFLFPIIL 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 F +RR L+R + + ++ + + ++ + + RN L S Sbjct: 115 FSQEEIENFKKGPSQRRYLLNRFISTLSYKYHKALSEYYKALYQRNLTLKNERD----VS 170 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + LG I R ++ + + E V L + S + Sbjct: 171 LWNSTLIRLGGYILFERRNVMEEIKRKVKE-VSNNLLGRDFLEVEYLSSVPLGDSEEEML 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT---IAHGSTGEQKVVLVGIFL 301 + + L + + + TL+GPHR D+I+ + GS GE+K+ + L Sbjct: 230 KNFETMLKEKEWEEKRKKYTLVGPHRDDVILRVIRDNVKYDLRKFGSAGEKKLGYIIWKL 289 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 A ++S PILL+D++ LDEDK+ ++ + + QIF+T + F + Sbjct: 290 AQVEILSENRKEKPILLIDDLFGDLDEDKQRKVWEGIKNF--QIFLTTPIRIEF---LKD 344 Query: 362 AKFMRISNHQAL 373 + N + + Sbjct: 345 FPHFLVKNGEVI 356 >gi|187735102|ref|YP_001877214.1| DNA replication and repair protein RecF [Akkermansia muciniphila ATCC BAA-835] gi|187425154|gb|ACD04433.1| DNA replication and repair protein RecF [Akkermansia muciniphila ATCC BAA-835] Length = 351 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 78/365 (21%), Positives = 142/365 (38%), Gaps = 21/365 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + +FR Y S Q I +G+N GKT++LEA+ FL + R A + Sbjct: 2 ISRLKLMDFRCYGSFSWQIPQQGAIILGNNARGKTSLLEAVCFLLRLQSPRTARTGPLVS 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-VVDELNKHLRISWL 125 G SF G+ G I+ + L++N + L + W+ Sbjct: 62 HGKQSF--------GIRGELPGQIRRILWAPDAP-DLRVNGEPRKDQRSYLADSYPVVWM 112 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 + + RR+++D + P +R + + R ++ RN LL + D + Sbjct: 113 GNDDLSLVQAGADARRKYMDFLGSQWHPGYRLALFSYRRALKTRNYLLKHRHRDKLQLDA 172 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 Q+A G ++ R ++ L+ I + ++S+ + D Sbjct: 173 YTRQLALHGTELRNLRANLLALLAPHIALAYRNIGGRQEQVSIAYRASEEGD-------- 224 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 ++L D +T GPHR DL + + S G+Q+ + + LA + Sbjct: 225 -LYERLCASMDRDIRYGQTQNGPHRDDLDITLNGRN-AAQFASEGQQRTTAISMKLAQSS 282 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 L++ TG PI L+D++ LD +R A + + +Q +T T + Sbjct: 283 LLTEETGHTPIHLIDDVFGELDPTRRIAFLQSLPA-DAQSLITTTHLDWLHNAPCPLPAF 341 Query: 366 RISNH 370 R+ + Sbjct: 342 RLEDG 346 >gi|325283210|ref|YP_004255751.1| DNA replication and repair protein recF [Deinococcus proteolyticus MRP] gi|324315019|gb|ADY26134.1| DNA replication and repair protein recF [Deinococcus proteolyticus MRP] Length = 357 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 140/349 (40%), Gaps = 23/349 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L+ +RN A L F A T G+NG GKTN+LEA GR ++ Sbjct: 4 VRLSKLSTLNYRNLAPDTLEFPAGVTGVWGENGAGKTNLLEAAYLALTGRTE-AGRLEEL 62 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + +EG E R R L+++ V R D Sbjct: 63 VLAGQAEAYVRADVLEGGSLSVQ-----EVGIGRGRRQLKVDGVRTRTGDLPRG--SAVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183 + P + G +RR +LD ++ + R+ ++ +ER + RN L EG W Sbjct: 116 IRPEDSELVFGSPSQRRAYLDSLLGRLSARYAEQLSRYERTVSQRNAALREGQ---DWAL 172 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 +A + LG I R + L L + +L LD + +S Sbjct: 173 DVWDAPLVTLGRDIMEFRARALVRLEELARHA-------NAELGSRKALDIRLLESTDP- 224 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 YA+ L R + TL GPHR DL + + S GE + + + A Sbjct: 225 -ASYAQTLHARRAEELARGVTLTGPHRDDLELTLGGLNAG-TYASRGEGRTAALSLRYAE 282 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +L+S G P+LL+D+ +A LD +R L + + Q +TGT++ Sbjct: 283 LQLLSERFGEPPVLLIDDWTAELDPQRRQFLLDLAASVP-QAIVTGTEQ 330 >gi|319648522|ref|ZP_08002738.1| DNA replication and repair protein recF [Bacillus sp. BT1B_CT2] gi|317389601|gb|EFV70412.1| DNA replication and repair protein recF [Bacillus sp. BT1B_CT2] Length = 275 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 107/272 (39%), Gaps = 9/272 (3%) Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 N + + + + + P + G RRRFLD + + P + + ++++ Sbjct: 2 NHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKI 61 Query: 166 MRGRNRLLT----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + RN L D + + Q+ E K+ + R++ ++ L + Sbjct: 62 LSQRNHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISR 121 Query: 222 PHIKLSLTGF--LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 +L+L L + Y + R + +L GPHR D++ Sbjct: 122 GLEELTLKYHTSLHVSDSPDLSKMINSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNG 181 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + + +GS G+Q+ + + LA LI G PILLLD++ + LD+ +++ L + Sbjct: 182 RDV-QTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLSELDDYRQSHLLHTIQ 240 Query: 340 DIGSQIFMTGTDKSVFDS-LNETAKFMRISNH 370 Q F+T T D A+ R+ N Sbjct: 241 G-RVQTFVTTTSVDGIDHKTLNEAEIFRVENG 271 >gi|227496603|ref|ZP_03926881.1| recombination protein F [Actinomyces urogenitalis DSM 15434] gi|226833883|gb|EEH66266.1| recombination protein F [Actinomyces urogenitalis DSM 15434] Length = 409 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 150/399 (37%), Gaps = 46/399 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+ +FR+Y L L + T F+G NG GKTN++EA+ +LS R + + + Sbjct: 1 MYVSDLSADDFRSYEHLVLSLEPGVTAFIGSNGQGKTNLVEAVGYLSNLTSHRVGADSAL 60 Query: 65 TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R G P R + + G +++E ++ R ++ +R EL LR Sbjct: 61 IRRAEPGQPQPAGAVLRAKVVHGERPTVLEIELISGKANRA-RLGRSPVR-PRELLGVLR 118 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS- 180 P + RRRFLD + + P + ++++ R LL Sbjct: 119 TVIFAPEDLSLVREEPGVRRRFLDDLAVTLRPSLAGVRTEHDKILAQRASLLKSARAARR 178 Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFL 232 S +AQ+A + ARV+++ L + + + + L+ L Sbjct: 179 STASMLSTLEVWDAQLAAAAATLIAARVDVVRRLRPWVASAYEAVSQAQSPVHLAYRSSL 238 Query: 233 ---DGKFDQSFCAL---------------------KEEYAKKLFDGRKMDSMSRRTLIGP 268 +G D A+ E + + L+G Sbjct: 239 LAHEGMADPDPRAITPGQEESWPPGEAELLDQASTAERLEAAMGQLHAREIDRGANLVGA 298 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT-----GFAPILLLDEIS 323 HR +L + S GEQ + + + LA ++ + P+L+LD++ Sbjct: 299 HRDELSLFLSGMPAK-GFASHGEQWSLALALRLASYEMLRHDVAAYGGDGEPVLILDDVF 357 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361 A LD+ +R AL V Q+ +T + V L+ T Sbjct: 358 ASLDDKRRRALAHTVAGAQ-QVLVTAAVPQDVPGELDGT 395 >gi|326772841|ref|ZP_08232125.1| RecF protein [Actinomyces viscosus C505] gi|326637473|gb|EGE38375.1| RecF protein [Actinomyces viscosus C505] Length = 405 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 85/407 (20%), Positives = 154/407 (37%), Gaps = 44/407 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y SL L + + FVG NG GKTN++EAI +L+ R + + Sbjct: 1 MYVSDLSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTAL 60 Query: 65 TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R G R + G +++E ++ R ++N R D L LR Sbjct: 61 VRRAAPGQAQPAGAVVRARAVHGERPSVLEIEIIAGKANRA-RLNRGGCRPRD-LLGVLR 118 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS- 180 P + RR FLD +V + P + ++++ R LL Sbjct: 119 AVVFAPEDLSLVRAEPGVRRGFLDDLVVTLRPGLAGVRAEHDKILAQRASLLKSARAARS 178 Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-----PHIKLSLT 229 S +AQ+A ++ ARV+++ L + + + +L+ Sbjct: 179 SISSMLSTLEVWDAQLAAAAARLIAARVDVVRRLRPWVASAYETVSGTSGQRSRAQLAYR 238 Query: 230 GFL---------DGKFDQSFCALKEEYAKKLF----------DGRKMDSMSRRTLIGPHR 270 L D + ++ A +E + + + L+G HR Sbjct: 239 SSLLTHEGHPEPDPHDESAWLAGEETLLDEAALAARLESAMGELHAREIDRGANLVGAHR 298 Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-----PILLLDEISAH 325 DL + S GEQ + + + LA ++ P+L+LD++ A Sbjct: 299 DDLSLFLTGLP-ARGFASHGEQWSLALALRLASYDMLRTDIDAYGGDGEPVLILDDVFAS 357 Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 LDE +R AL ++V + D V L + R+++ + Sbjct: 358 LDEQRRRALAQMVAGAQQVLLTAAVDDDVPAEL--SGARYRVADGEV 402 >gi|320334765|ref|YP_004171476.1| DNA replication and repair protein recF [Deinococcus maricopensis DSM 21211] gi|319756054|gb|ADV67811.1| DNA replication and repair protein recF [Deinococcus maricopensis DSM 21211] Length = 368 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 82/361 (22%), Positives = 138/361 (38%), Gaps = 23/361 (6%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + ++ L +RN + L T G+NG GKTN+LEA G Sbjct: 11 HVHLRALTTLHYRNLSPATLDLPRGITSIWGENGAGKTNLLEAAYLALTGLT-NAPRVEQ 69 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G + A + + + + L R R ++++ V R D Sbjct: 70 LVTRGEREGYVR-ADLHSGGSTSILEVGL----ARGRRHVKVDGVRARSSDLPRG--SAV 122 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182 W+ P + G RR +LD ++ + R+ ++ FER + RN L G +W Sbjct: 123 WIRPEDSDLVYGSPSARRAYLDALLSRLSVRYAHQLSRFERTLTQRNAALKSG---ETWA 179 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + LG ++ R ++ L+ L L G + Sbjct: 180 MDVWDDALVTLGSELMTMRRRVLVRLAELTQAAHT---------QLGGHKPLTLALTEST 230 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 E Y L R + +T+IGPHR DL + D S GE + V + + A Sbjct: 231 TPETYLADLAARRAEELARGQTVIGPHRDDLALTL-DLFPAADFASRGEARTVALALRKA 289 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 L+ G P+LL+D+ +A LD ++R L + + Q +TGT+ + L A Sbjct: 290 ELDLLRERYGENPVLLIDDFTAELDPNRRQFLLDLAHSVP-QALVTGTEHAPGARLTLRA 348 Query: 363 K 363 + Sbjct: 349 E 349 >gi|320535591|ref|ZP_08035688.1| DNA replication and repair protein RecF [Treponema phagedenis F0421] gi|320147554|gb|EFW39073.1| DNA replication and repair protein RecF [Treponema phagedenis F0421] Length = 356 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 77/370 (20%), Positives = 157/370 (42%), Gaps = 21/370 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +++ FRN ++ + A +G NG GKTN+LE++ S G FR + +++ Sbjct: 1 MPFLTISLVNFRNLSNKPIDLSAPEVFLIGKNGQGKTNLLESLYIASYGNSFRTRTDSEI 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G+ + + E + ++ IS + ++ N IR +L + Sbjct: 61 YTTGTNEYSIRAMYKAEKTDSISIIS-------KNGKKQIEKNLKKIRSRKDLVNTIPCV 113 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + G RR F+D+ + +P + + + L++ +N+ + E Sbjct: 114 LFFHNDLDFAVGSPERRRFFIDQSLSMYNPFYLDLLQKYTVLLKTKNKEIKEQK--RVLL 171 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-A 242 S++ Q+A +G +I R + I+ +++ + K+S + ++ S+ + Sbjct: 172 DSLDVQIASVGFEIISYRKKTIDEFNTIFSDIY-------EKVSGIDNVRIEYKPSWKHS 224 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 EE L R+ D + + GPHR + + + I+ STG+ +++ + + A Sbjct: 225 SAEEVMAHLAARREKDILLGTCMSGPHRDKIHF-VRNNELFISTASTGQLRLISLVLRTA 283 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NET 361 A + TG PILL+D++ LD DKR + ++ Q+F T + E Sbjct: 284 QALFFTKITGKLPILLMDDVLLELDPDKRKSFTDLLPKYD-QLFCTFLPGEPYKKYAKEK 342 Query: 362 AKFMRISNHQ 371 +SN + Sbjct: 343 TLIYFVSNGE 352 >gi|226226221|ref|YP_002760327.1| DNA replication and repair protein RecF [Gemmatimonas aurantiaca T-27] gi|226089412|dbj|BAH37857.1| DNA replication and repair protein RecF [Gemmatimonas aurantiaca T-27] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 85/353 (24%), Positives = 144/353 (40%), Gaps = 16/353 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + E+RN+ SL L + +G+NG GKTN+LEA+++L R FR A ADV R Sbjct: 2 LAQLAVREYRNFHSLDLEVPTGGLVVIGENGHGKTNLLEAVAYLGLLRSFRGARDADVIR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+P+F A + +S+ E R + ++ V + L Sbjct: 62 FGAPAFH-VRATLHAPAAWHTVSVGYERSSKR--KRATLDGVEQPRLTSALGALPSVEFS 118 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYFD 179 P+ + + ERRR+LD M+ P + + + + RN +L Sbjct: 119 PADVALVASGPGERRRYLDVMLALSSPAYLVALQGYRSALLRRNAVLKAAQRSAVRAQEQ 178 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL----SLTGFLDGK 235 + S E +AE G I AR + A + E L S+ G Sbjct: 179 EARVSVWEPALAEHGGVIVAARHAFVRAQAGYYAELCAAIGERQEALLRYVSVGGDTRSD 238 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 ++ + R + TL+GP R DL + + + GS G+Q+ Sbjct: 239 ALTDPLMQQDALTRAFTQQRSAELRRGVTLVGPQRDDLQLTLGGRELR-TFGSAGQQRSA 297 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFM 347 + + L + + G++P+LLLD+ A LD + + ++ G SQ+ + Sbjct: 298 AIALRLLELITLRDALGYSPLLLLDDPFAELDLGRAARVLDLLDAAGASQVLL 350 >gi|94985720|ref|YP_605084.1| DNA replication and repair protein RecF [Deinococcus geothermalis DSM 11300] gi|123257076|sp|Q1IXW9|RECF_DEIGD RecName: Full=DNA replication and repair protein recF gi|94556001|gb|ABF45915.1| DNA replication and repair protein RecF [Deinococcus geothermalis DSM 11300] Length = 358 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 91/362 (25%), Positives = 153/362 (42%), Gaps = 25/362 (6%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + +++ L+ +RN A L F A T G+NG GKTN+LEA G Sbjct: 2 SGVQLSSLSTLNYRNLAPGTLHFPAGVTGVFGENGAGKTNLLEAAYLALTGLT-DVTRLE 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + + G + R + +G +SI+ E R R L+++ V + D Sbjct: 61 QLIQSGEREA---YVRADVQQG-GSLSIQ-EVGLGRGRRHLKVDGVRAKTGDLPRG--SA 113 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 W+ P + G RR +LD ++ + R+ +++ +ER + RN L G W Sbjct: 114 VWIRPEDSELVFGPPAGRRAYLDALLSRLSARYGQQLARYERTVAQRNAALKAG---EDW 170 Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQSF 240 + + +LG I + R + L L E Q + + L+L S Sbjct: 171 AMHVWDDALVKLGTDIMLFRRRALTRLDELAREANAQLGSRKPLTLTL----------SE 220 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E YA L R + T+ GPHR DLI+ + + + S GE + V + + Sbjct: 221 STTPETYAHDLAARRAEELSRGATVTGPHRDDLILTLGELPAS-EYASRGEGRTVALALR 279 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 A L++ G P+LL+D+ +A LD +R L + + Q +TGT+++ +L Sbjct: 280 CAELELLAEKFGEKPVLLIDDFTAELDPGRRGFLLDLAASVP-QAIVTGTERAPGAALTL 338 Query: 361 TA 362 A Sbjct: 339 RA 340 >gi|23465220|ref|NP_695823.1| recombination protein RecF [Bifidobacterium longum NCC2705] gi|189440296|ref|YP_001955377.1| recombinational DNA repair ATPase [Bifidobacterium longum DJO10A] gi|322690196|ref|YP_004219766.1| recombination protein RecF [Bifidobacterium longum subsp. longum JCM 1217] gi|23325848|gb|AAN24459.1| recombination protein RecF [Bifidobacterium longum NCC2705] gi|189428731|gb|ACD98879.1| Recombinational DNA repair ATPase [Bifidobacterium longum DJO10A] gi|320455052|dbj|BAJ65674.1| recombination protein RecF [Bifidobacterium longum subsp. longum JCM 1217] Length = 395 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 69/357 (19%), Positives = 130/357 (36%), Gaps = 18/357 (5%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 + F I G NG+GKTN++EA+ LS G R +S + G + + Sbjct: 2 VDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPLIERGQTTATIRANVADDA 61 Query: 83 EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142 + R R IN + ++ + P R+ SG RR Sbjct: 62 GQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVSFTPEDQRLVSGDPGARRT 118 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----------SSWCSSIEAQMAE 192 +++ ++P + + + F R+ + R LL + + S Q E Sbjct: 119 MMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNNGQPMDAVLSGLEIWTGQFIE 178 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252 GV + R +I L+ +++LT F + ++ Sbjct: 179 AGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSFDEVLMFDDPHPQISEHFQ 238 Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312 + LIGP R D+ ++ S GE + + + +A ++ + G Sbjct: 239 RIYPGEVARGVNLIGPQRDDMNLELGGIP-AREFASNGEMWTMALALKMALFEIVRDRLG 297 Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368 PI++LD++ A LD+ +R + Q+ +T + V D E+A + ++ Sbjct: 298 LQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGDVPDY--ESAHRIDVA 351 >gi|6580764|gb|AAF18270.1| DNA/ATP binding protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 318 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 106/318 (33%), Positives = 165/318 (51%), Gaps = 8/318 (2%) Query: 63 DVTRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 D+ R F+ A++ +E I +I + S R +++N V + L++ Sbjct: 1 DLVRREGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTT-SANALSEW 59 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYF 178 L I WL P+MDR++ + RRRFLDR+ I P H R +E MR RN+LL+ E + Sbjct: 60 LAILWLTPAMDRLYQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGY 119 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--F 236 D W +E MAE I +AR ++++ LS I + + F L+L +D + Sbjct: 120 DPLWLDGLEQIMAEQATHILLARRQLVDLLSEEIAKQ-EDGLFAKADLALEEGVDSRDLV 178 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 + + R D+ RTL G HR+DL V + KA+ A STGEQK +L Sbjct: 179 THNSEEIMPLLQNIWQKSRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGEQKALL 238 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +G+ LA LI+ G P+LLLDE++AHLD +R LF I+ G Q++MTGT+ S+F+ Sbjct: 239 LGLVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLFE 298 Query: 357 SLNETAKFMRISNHQALC 374 + E A + ++ + + Sbjct: 299 TAGEAACYFQLDKGEIIS 316 >gi|159904234|ref|YP_001551578.1| recombination protein F [Prochlorococcus marinus str. MIT 9211] gi|159889410|gb|ABX09624.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9211] Length = 352 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 84/347 (24%), Positives = 148/347 (42%), Gaps = 17/347 (4%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90 + +G NG+GK+N+LEA+ L R R +S D+ S + I Sbjct: 7 LVIGPNGIGKSNLLEAVELLGSLRSHRASSDQDLIHWEEKSALLRAIT------EDEDKI 60 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150 +LE R + R ND + +L LR + G RR +LDR+V Sbjct: 61 ELELR-KKGGRKAYRNDKCLSRQIDLIGPLRCVGFSALDLHLVRGEPSLRRHWLDRVVLQ 119 Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGVKINIARVEMI 205 ++P + M RL+R RN+L SS + + Q+A + +I+ R + Sbjct: 120 LEPVYSDLMSRLIRLLRQRNQLWRNWKHTSSKDYGTLLDAFDVQLALVSTRIHRRRQRAL 179 Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK--EEYAKKLFDGRKMDSMSRR 263 N L L + + ++ + + L L ++ L+ K+L + R ++ Sbjct: 180 NRLKPLAILWQERLSKGNEALELHYLPGSFLEKQDEELECRLSIEKQLLEQRAVEQKLGH 239 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 +GPHR ++ + A GS G+Q+ +++ + LA LI G APIL+LD++ Sbjct: 240 CRVGPHRDEIEF-LLNGASARRFGSAGQQRTIVLSLKLAELELIGEIYGEAPILILDDVL 298 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISN 369 A LD ++ L V Q ++ T F+ ++ +++ N Sbjct: 299 AELDPMRQLLLLEAVGHK-HQCLISATHLDAFEGDWRGESQLLQLGN 344 >gi|281356710|ref|ZP_06243201.1| DNA replication and repair protein RecF [Victivallis vadensis ATCC BAA-548] gi|281316837|gb|EFB00860.1| DNA replication and repair protein RecF [Victivallis vadensis ATCC BAA-548] Length = 353 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 88/358 (24%), Positives = 150/358 (41%), Gaps = 15/358 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L ++ FR+YA+ R F + +F G NG GKTN+LE+I FLS R FR S ++ R Sbjct: 4 IEQLELANFRSYAAGRFRFSSSRVVFTGPNGAGKTNLLESIYFLSILRSFRTVSGRELVR 63 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 IG F ARV+ ++ + R I IR E + R V Sbjct: 64 IG-ERGFELKARVDKGAYHEELRLAQTLAGK---RETWIGANRIRRSSEFIREFRAVVFV 119 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P I G S RRRF D M+ +D + + ++ R + RNR L + ++ ++ Sbjct: 120 PEDRNISGGSSSFRRRFFDMMISTLDGGYLTALNNYYRALSQRNRALKQ-KEQAAVAAAF 178 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E +MA I R + + + ++ ++ + E Sbjct: 179 EPEMAVNAPLIARQRRIYAKLIEEEVSRMLAEDGNLEFRIVCR--------TDYPENAAE 230 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Y + L R + + TL GP + K + +GSTG+ +++ + + LA L Sbjct: 231 YREMLERNRPKEQLRSCTLSGPQLDEFDFLLNGKLLRY-YGSTGQIRIISLLLKLAEFNL 289 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + +L+D+++ LDE + FR ++ Q F T T+ + + + Sbjct: 290 VKRAAKEPVAVLVDDVTGELDELNKARFFRTISGADQQFF-TFTELPELEIFRDAEEI 346 >gi|58584386|ref|YP_197959.1| recombination protein F [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418702|gb|AAW70717.1| Recombinational DNA repair ATPase, RecF [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 356 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 11/367 (2%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M IK L +S FRN+ + L D + +G NG+GKTNILEAIS L+ G ++A Sbjct: 1 MAAHCYIKKLKLSNFRNHLNFELDSDDSSVVIIGKNGIGKTNILEAISLLAKSNGMKKAK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 +++ S ++ L I I + +QI + L + Sbjct: 61 ASEMQNRFSNKDWAVHYDFFNGADLNSIGIAKSFN----KKLIQIGGKMQSSYSSLYRIS 116 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + WL+P MD I +R +FLDR+V + + + + + R R RLL E + Sbjct: 117 NVIWLIPQMDYILLNSPSDRLKFLDRIVSLFEENYACYYMRYRKAKRERGRLLRENILNK 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 SW SS+E MA V I R+ ++ L I Y + FP + L L + Sbjct: 177 SWLSSLENIMAVNAVNILDMRLSVLKMLQDTINSY-STQFFPKVSLKFNSQL------TL 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + +L + R+ DS++ R + V + + I STGEQK++L+ I Sbjct: 230 SDTAKYFQNRLRENREKDSLTGRITFCVNNDKFQVFCQRRDLPINLCSTGEQKLLLLSII 289 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 L+ + AP+LLLD+I +HLD+ R L + I Q ++T D++ F + + Sbjct: 290 LSSVKARCIHYNKAPLLLLDDIMSHLDKYYRKVLIEEMLSIRCQAWITDVDQNNFGNYID 349 Query: 361 TAKFMRI 367 K + + Sbjct: 350 YFKTIEL 356 >gi|184199649|ref|YP_001853856.1| DNA replication and repair protein RecF [Kocuria rhizophila DC2201] gi|183579879|dbj|BAG28350.1| DNA replication and repair protein RecF [Kocuria rhizophila DC2201] Length = 474 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 93/389 (23%), Positives = 154/389 (39%), Gaps = 27/389 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR YA L L T+FVG NGVGKTNI+EA+ + + R + + Sbjct: 1 MFVDHLSLLDFRTYAGLDLALTPGLTVFVGPNGVGKTNIVEAVDWAATLGSHRVSGNTPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ R+ G ++ E R+ R +R + L L Sbjct: 61 IATGAERAI---VRLRVNRGGQRTVLEHELNATRANRVRLNRAAPVRARESL-GILHTVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178 P + G RRRFLD + A+ P D+ER +R RN LL Sbjct: 117 FSPEDLTLVKGDPSHRRRFLDDLATAMRPVLSAARSDYERALRQRNALLKSTRRSHGLSD 176 Query: 179 -DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP----HIKLSLTGFLD 233 D + + Q+A G + AR++++ AL + Q+ ++ + Sbjct: 177 SDRATLAVWNDQLARAGAAVMAARLQLLKALEPEVDRAYQQLTEGPKHVTLEYESSSVAP 236 Query: 234 GKFDQ-----SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 G Q S L E + + + TL+GPHR DL++ D + S Sbjct: 237 GAEQQALQHFSVADLHELMMQAFERMERQERERGITLVGPHRDDLVIHLGDTPAK-GYAS 295 Query: 289 TGEQKVVLVGIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 GE + + L + G AP+L+LD++ A LD +R L +V Q+ Sbjct: 296 HGETWSTALALRLGSWYVHLADDPSPGAAPVLILDDVFAELDARRRRRLAELVRQAE-QV 354 Query: 346 FMT-GTDKSVFDSLNETAK-FMRISNHQA 372 +T D+ + +L E + + + Sbjct: 355 LVTAAVDEDLPAALLEHSHTVVDVEPGAV 383 >gi|269958391|ref|YP_003328178.1| recombination protein F [Anaplasma centrale str. Israel] gi|269848220|gb|ACZ48864.1| recombination protein F [Anaplasma centrale str. Israel] Length = 371 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 106/369 (28%), Positives = 172/369 (46%), Gaps = 6/369 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + FRNY L + +G NG GKTNILEAIS LS G G R S + Sbjct: 9 IQSIKLCNFRNYTRAELETHGCSVVLLGKNGSGKTNILEAISLLSKGPGLRNVSADCMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + + V + G S+ + +++ R L I++ + L+ L I WL+ Sbjct: 69 HESGTPWRVHHTV--LSGSTQFSVSVTKHENK--RRLFIDEKAG-LYSTLHNMLCIVWLM 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D + ER RF DR+V D + ++ +ER R R ++L E D +W +S+ Sbjct: 124 PQLDHVLLKAPSERLRFFDRVVHVFDKDYASHIVRYERARRDRRKVLREAPQDLNWLASL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E MA GV I R+ + L + + F + L + + +S + Sbjct: 184 ENVMAISGVYIAQTRLNALRILQQTMADNNIDSPFLKFTIHLDSGV-FELLESQEHAVSQ 242 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Y ++L R D + T G H + + DK +T + STGEQK++L+ + L A Sbjct: 243 YMQRLKQSRAQDMHGQLTSFGVHNDHFQISHADKNLTASSCSTGEQKILLLSLLLTAAIT 302 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 API+LLD+I +HLD R L + + +G Q ++T D+ F+ L + R Sbjct: 303 KHRVHSQAPIMLLDDIMSHLDYTHRQELVQTIKSVGCQTWITDVDERNFEGLEQCFMRFR 362 Query: 367 ISNHQALCI 375 I+++ + Sbjct: 363 ITDNDIGPV 371 >gi|119503575|ref|ZP_01625658.1| recombination protein F [marine gamma proteobacterium HTCC2080] gi|119460637|gb|EAW41729.1| recombination protein F [marine gamma proteobacterium HTCC2080] Length = 376 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 78/377 (20%), Positives = 164/377 (43%), Gaps = 16/377 (4%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + + +++ + I RN ++ RLV ++ + G NG GK++I+EA+S LS GR FR +S Sbjct: 4 LHDNFRLESVYIDGVRNLSAQRLVMGSEINLISGPNGSGKSSIVEALSMLSTGRSFRSSS 63 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 V + G A+V + + I R L+++ + + E + Sbjct: 64 VRSVIQHGRDDCI-VQAQVRYRGSVRSLGI---RRSKTGELTLRLDGEPMSSLAEFAAQV 119 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + PS +G RRR +D +F ++ ++R+++ RN +L G Sbjct: 120 PTIIIDPSSTDTITGPPDSRRRLIDGTLFHVEHGFLDVWRRYQRVLKQRNAMLRRGMMRG 179 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +++ +G + RV +++ L + + + N L S Sbjct: 180 Q--DPWLRELSRVGSDLTNYRVGLVSRLGPVFKSILAELNSALADTELVFRFGWDASLSL 237 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A L + D T +GPHR+DL + + ++++ S G+ K+ ++ + Sbjct: 238 EA-------GLARSTESDIAQGFTHVGPHRADLRLQWQGRSMSDVF-SRGQLKLAVIALR 289 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS--L 358 LA R+++ + G AP+ L+D+++A LD+ + R++ SQ+ +T + + + Sbjct: 290 LAQGRVLAESGGGAPLYLVDDLTAELDDHHALQVCRMLEQTSSQVVLTTVSELAQERPWM 349 Query: 359 NETAKFMRISNHQALCI 375 ++ + + + Sbjct: 350 HDVSSVFHVEQGCVSKV 366 >gi|203284347|ref|YP_002222087.1| DNA replication and repair protein RecF [Borrelia duttonii Ly] gi|201083790|gb|ACH93381.1| DNA replication and repair protein RecF [Borrelia duttonii Ly] Length = 355 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 149/365 (40%), Gaps = 14/365 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + F+N + + FD + F G+NG GKTNIL+AI L+ F + ++ Sbjct: 2 VKKIEFFNFKNIENQVINFDFDNIYFCGENGSGKTNILDAIYCLAFASSFLVNTDKELIT 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F + + + I L R+D+ + +++N+ ++R +L ++ Sbjct: 62 YGEREF---YLKCFYQTKEKNGEINLSVRNDK--KEIKVNNSIVRDRRDLILNIPAIIFS 116 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 G M+RR F D+ + I + + + ++++ RN +L + D Sbjct: 117 NHDIDFIIGTPMKRRWFFDQAMSFISLSYLDSLRKYRKILKQRNLILKQR--DKDLLKIY 174 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++I R + Y L + F C K+E Sbjct: 175 NETFVDCALEITEMRKNFVEHFCRFFQYYCSLIFDVSCNLEIKYFPSVT-----CCSKDE 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + + L K + S TLIGPHR DL + + H STG+ +V+ + L + Sbjct: 230 FFEILCLREKDELYSETTLIGPHR-DLYEILSEHRVFTDHASTGQIRVLALIYRLVQVII 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 ++ +PILL D++ LD KR +F I+ SQ F T D + R Sbjct: 289 FNDKFNMSPILLFDDVFLELDSIKRKKVFEILPK-DSQCFFTFLDDCYDVNRESNFIVYR 347 Query: 367 ISNHQ 371 ++N + Sbjct: 348 MNNGR 352 >gi|313611862|gb|EFR86322.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL F2-208] Length = 278 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 114/277 (41%), Gaps = 8/277 (2%) Query: 102 CLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161 ++N + + + + +L + P + G RRRFL+ + + P + + + Sbjct: 1 RAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSE 60 Query: 162 FERLMRGRNRLLT----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217 ++R+++ RN+ L + D + Q A++ + + R + I L + Sbjct: 61 YQRILQQRNQYLKMLQMKRKVDPILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHH 120 Query: 218 KENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 + + L + + K + +K+ ++ + TLIGPHR D + Sbjct: 121 QISRGLETLKIEYKASVTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFY 180 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 + + GS G+Q+ + I LA LI TG P+LLLD++ + LD+ +++ L Sbjct: 181 INGQNV-QDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLG 239 Query: 337 IVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQA 372 + Q F+T T S D + A + Sbjct: 240 AIEGK-VQTFVTTTSTSGIDHETLKQATTFYVEKGTV 275 >gi|254421230|ref|ZP_05034948.1| DNA replication and repair protein RecF [Synechococcus sp. PCC 7335] gi|196188719|gb|EDX83683.1| DNA replication and repair protein RecF [Synechococcus sp. PCC 7335] Length = 401 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 82/402 (20%), Positives = 164/402 (40%), Gaps = 47/402 (11%) Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 FRNY+S + F A TI +GDN GK+N+LEA+ L+ + R + D+ G + Sbjct: 2 QNFRNYSSQSVAFGAPKTILLGDNAQGKSNLLEAVELLATLKSHRTSRDRDLVGEGKKTA 61 Query: 73 FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 A+++ G +++++ L R +N ++ + L + Sbjct: 62 H-IKAQLQKELGPSELNLVLRNGGR---RATILNGETLKRQQDFLGSLNAVQFSSLDIDL 117 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYFDSSWCSS 185 G ERR ++D ++ ++P + + + ++++ RN + + FDS+ + Sbjct: 118 VRGGPGERRSWIDTLLTQLEPVYAYILQQYNQVLKQRNAFIKQHTDEENSQPFDSTQMAL 177 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--------------- 230 +AQ+ G ++ R + L L + + + +L +T Sbjct: 178 WDAQLVAAGTRVIRRRSRGLQRLIPLAQAWHRAISGDAEQLMITYQPNISTTVSTTGLST 237 Query: 231 ------------------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 ++ +++ + +K+ + R +L GPHR D Sbjct: 238 EAGLSTEETLLLKDPKKDSVEDAQLDDPDHIQQVFFEKIKSRAIAEYHQRTSLAGPHRDD 297 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 + + +GS G+Q+ +++ + LA LI G P+LLLD++ A LD ++N Sbjct: 298 IDFSI-NHTPARQYGSQGQQRTLVLALKLAELELIEAVIGEPPLLLLDDVLAELDLKRQN 356 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDS-LNETAKFMRISNHQAL 373 L + D Q +T T FD+ E ++ + + L Sbjct: 357 QLLETIED-RFQTLITTTHLGAFDAKWLEQSQILTVHQGALL 397 >gi|153826430|ref|ZP_01979097.1| recF protein [Vibrio cholerae MZO-2] gi|149739816|gb|EDM54011.1| recF protein [Vibrio cholerae MZO-2] Length = 311 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 63/316 (19%), Positives = 128/316 (40%), Gaps = 12/316 (3%) Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDE 115 + + + + F E + + R ++I + + + Sbjct: 1 KSSLTGRIIQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQ 60 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L + L + + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 61 LAQILPLQLIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKS 120 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 S + ++A L +I+ R +N L + E + + P + L + + Sbjct: 121 AQSYRE-LSYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWE 178 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 DQ Y L + D T GP+++DL + + S G+ K++ Sbjct: 179 KDQP-------YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLM 230 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSV 354 + + +A + ++ TG I L+D+ ++ LD +R L + G+Q+F++ T+ V Sbjct: 231 VCALRVAQGQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQV 290 Query: 355 FDSLNETAKFMRISNH 370 D L+E++K +++ Sbjct: 291 ADMLDESSKTFHVAHG 306 >gi|289207190|ref|YP_003459256.1| DNA replication and repair protein RecF [Thioalkalivibrio sp. K90mix] gi|288942821|gb|ADC70520.1| DNA replication and repair protein RecF [Thioalkalivibrio sp. K90mix] Length = 357 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 77/365 (21%), Positives = 134/365 (36%), Gaps = 15/365 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L RN + VG NG GKT++LEA L+ GR FR V R Sbjct: 2 LEGLWWRGVRNLSEQTFEPGEGINRLVGPNGAGKTSVLEACHVLAAGRSFRTPQLRRVVR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G + + G + + E R +++ + + + L + L Sbjct: 62 SGEKGLWIGGRVRDLHGGEHRLGVSWE-----GTRRSRLDGRWMEGHASVAEWLPVRVLH 116 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 + +G ERRR LD F +R + R RN L +G D Sbjct: 117 AGSFDLLTGSPEERRRLLDWGCFHSVRGYRWHWQQWRRSHEQRNAALRKG--DRRAAREF 174 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E + + G I AR I+ E + F L +D+ Sbjct: 175 ERPLVDAGENITQARQAYIDRWEINTSEAARVFGFSQRLGDFQVHLRVGWDRDRS----- 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 ++ + R D +GP R+D+ + + + A S GEQK ++ + AR+ Sbjct: 230 LSEAIARSRDSDEERGFGQVGPQRADIDLRFDGR--VAAEASRGEQKRLITALTGGQARM 287 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA-KFM 365 + G AP++LLD++ + LD L + + G Q+ +T + + + + Sbjct: 288 LEREAGRAPVVLLDDVVSELDVAAVEGLMCGLLEFGWQVLVTTVEPHIPGLEGGRSTRLF 347 Query: 366 RISNH 370 + + Sbjct: 348 HVEHG 352 >gi|203287881|ref|YP_002222896.1| DNA replication and repair protein RecF [Borrelia recurrentis A1] gi|201085101|gb|ACH94675.1| DNA replication and repair protein RecF [Borrelia recurrentis A1] Length = 355 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 82/365 (22%), Positives = 149/365 (40%), Gaps = 14/365 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + F+N + + FD + F G+NG GKTNIL+AI L+ F + ++ Sbjct: 2 VKKIEFFNFKNIENQVINFDFDNIYFCGENGSGKTNILDAIYCLAFASSFLVNTDKELIT 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G F + + + I L R+D+ + +++N+ ++R +L ++ Sbjct: 62 YGEREF---YLKCFYQTKEKNGEINLSVRNDK--KEIKVNNSIVRDRRDLILNIPAIIFS 116 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 G M+RR F D+ + I + + + ++++ RN +L + D Sbjct: 117 NHDIDFIIGTPMKRRWFFDQAMSFISLSYLDSLRKYRKILKQRNLILKQR--DKDLLKIY 174 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + ++I R + Y L + F C K++ Sbjct: 175 NETFVDCALEITEMRKNFVEHFCRFFQYYCSLIFDVSCNLEIKYFPSVT-----CCSKDK 229 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + + L K + S TLIGPHR DL + + H STG+ +V+ + L + Sbjct: 230 FFEILCLREKDELYSETTLIGPHR-DLYEILSEHRVFTDHASTGQIRVLALIYRLVQVII 288 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 ++ +PILL D++ LD KR +F I+ SQ F T D + R Sbjct: 289 FNDKFNMSPILLFDDVFLELDSIKRKKVFEILPK-DSQCFFTFLDDCYDVNRESNFIVYR 347 Query: 367 ISNHQ 371 ++N + Sbjct: 348 MNNGR 352 >gi|73666678|ref|YP_302694.1| recombination protein F [Ehrlichia canis str. Jake] gi|72393819|gb|AAZ68096.1| RecF protein [Ehrlichia canis str. Jake] Length = 372 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 110/371 (29%), Positives = 180/371 (48%), Gaps = 10/371 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + FRNY++L L ++ + +G NG GKTNILEAIS LS G G R + + Sbjct: 9 INNLRLVNFRNYSNLELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNTESMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +S ++ G+ I I +R+++ + N + L+K + I+WL+ Sbjct: 69 STSDSPWSLSYQIHTQNGIYPIVI---SRNNKQRNIIISNKS--QNYITLHKIISITWLI 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D IF ER RF DR+ D ++ +I + + + R+RLL D+ W SS+ Sbjct: 124 PQLDHIFLKSQSERLRFFDRITHIFDTKYASYIIKYNKAKQERSRLLHNNSTDNFWLSSL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E+ +AE G+ I R ++ L S + + F + + + DQ E Sbjct: 184 ESIIAENGINIARTRFNVMQILQSSLSQNSHSNAFFKAVIKIQSQVFDLLDQEDS--IEL 241 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Y + L R DS+S G H + + + +K + + STGEQK++L+ + L+ Sbjct: 242 YKEHLKKNRAKDSLSNLVSFGVHNDNFQIFHLEKTLIANNCSTGEQKILLLSLILSSVIA 301 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364 G PILLLD++ +HLD + L + +I Q+++T D + F E KF Sbjct: 302 -KQNIGEYPILLLDDVMSHLDAFHQEKLIETIINIKCQVWLTDIDLTQQNFAKYREYFKF 360 Query: 365 MRISNHQALCI 375 I N+ A+ + Sbjct: 361 FHIINNTAILL 371 >gi|294790226|ref|ZP_06755384.1| RecF protein [Scardovia inopinata F0304] gi|294458123|gb|EFG26476.1| RecF protein [Scardovia inopinata F0304] Length = 422 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 143/388 (36%), Gaps = 44/388 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +R++ + + + G NG+GKTNI+EAI FLS R S + Sbjct: 1 MYISRLALDHYRSWNTCLIDLTDSVNVLYGHNGLGKTNIVEAIEFLSTSSSHRVNSSQPL 60 Query: 65 TRIG---------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109 + G + S R E ++ + R VR + + Sbjct: 61 IQRGYKQATIRANLEIPSQAGSSKQGSFRQESARQTERFTVTIPIRGANRVRVNNNSSLY 120 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 +R ++ ++ P + S RRRFLD + P + + + R R Sbjct: 121 MR---DIVGQIKTVVFAPEDQWLLSLDPSRRRRFLDDAGIQLIPEYYDLSQKYSHIARQR 177 Query: 170 NRLLTE--------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 LL D + Q+ G+ ++ R +++ LS L E + Sbjct: 178 VALLKNMGSGQRESSADDYTGLEIWTGQLISTGLSLSTMRQKIVEKLSPLFSEIYAQLAG 237 Query: 222 PH--IKLSLTGFLDGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 +L+ FDQS L + ++LF G + R LIGPHR DL Sbjct: 238 SEHKAQLAYHPSFAEIFDQSDDPFTLISNHFQRLFPG---ELAQGRNLIGPHRDDLDFSL 294 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISN---------TTGFAPILLLDEISAHLDE 328 + S GE + + + +A +L+S PIL+LD++ + LD Sbjct: 295 HGMPAK-EYASNGEMWTMALALKMALFQLLSENLLSESSVSAGAGKPILILDDVFSQLDT 353 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD 356 +R + + Q+ +T ++ Sbjct: 354 SRREKIVDF-SQQQEQVLVTAASENDIP 380 >gi|68171576|ref|ZP_00544950.1| recF protein [Ehrlichia chaffeensis str. Sapulpa] gi|88658291|ref|YP_506906.1| recombination protein F [Ehrlichia chaffeensis str. Arkansas] gi|67999002|gb|EAM85679.1| recF protein [Ehrlichia chaffeensis str. Sapulpa] gi|88599748|gb|ABD45217.1| putative DNA replication and repair protein RecF [Ehrlichia chaffeensis str. Arkansas] Length = 372 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 107/371 (28%), Positives = 176/371 (47%), Gaps = 10/371 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + FRNY +L L ++ + +G NG GKTNILEAIS LS G G R + + Sbjct: 9 INNLRLVNFRNYINLELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNTESMQN 68 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S S +S ++ G+ I+I + + + L+K I WL+ Sbjct: 69 SLSNSPWSVSYQMHTQNGIYPIAIS-----RNHNKRAILISNKNQSYTTLHKITSIIWLI 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +D IF ER RF DR+ D ++ +I + + + R++LL D+ W SS+ Sbjct: 124 PQLDHIFLKSQSERLRFFDRIAHIFDTKYAIHIIKYNKAKQERSKLLYNNSIDNFWLSSL 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E+ +AE G+ I R ++ L + + + + F + + + DQ E Sbjct: 184 ESIIAENGINIARIRFNVLQTLQNTLSQNSKSHAFFKAIIKIQSQVFNLLDQENS--IEL 241 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Y + L + R DS+S G H + + + +K + + STGEQK++L+ + L + Sbjct: 242 YKEHLKNNRSKDSLSNLVNFGVHNDNFQIFHSEKNLIANYCSTGEQKILLLSLIL-SSVF 300 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364 G PILLLD++ +HLD + L I+ DI Q+++T D + F E KF Sbjct: 301 AKQNIGEYPILLLDDVMSHLDAYHQEKLLEIIRDIKCQVWLTDIDLTQQNFTKHKEYFKF 360 Query: 365 MRISNHQALCI 375 ++N+ A + Sbjct: 361 FHVANNTATLL 371 >gi|332071497|gb|EGI81991.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA41301] Length = 255 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 112/254 (44%), Gaps = 5/254 (1%) Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-F 178 + + P ++ G RR+F+D + I P + + ++ +++ RN L Sbjct: 1 MNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKI 60 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D ++ S ++ Q+ + G ++ R++ I L S + + + +LS++ Sbjct: 61 DETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-T 119 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L E + L R D + T +GPHR D+ + + GS G+ + +++ Sbjct: 120 DKQNLSESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLS 177 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 I LA L+ + T +PILLLD++ + LD ++ L ++ Q F+T T +L Sbjct: 178 IKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNL 236 Query: 359 NETAKFMRISNHQA 372 E I + +A Sbjct: 237 PENLSIFTIQDGKA 250 >gi|325912222|ref|ZP_08174619.1| DNA replication and repair protein RecF [Lactobacillus iners UPII 143-D] gi|325475881|gb|EGC79050.1| DNA replication and repair protein RecF [Lactobacillus iners UPII 143-D] Length = 276 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 112/280 (40%), Gaps = 12/280 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ Sbjct: 1 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A + G +I L+ + IN + + + + Sbjct: 61 IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237 + + + Q+A L ++ RV ++ L + + L + F + Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 S + ++ R + TL+GPHR DL V Sbjct: 236 DSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQVFI 275 >gi|300021543|ref|YP_003754154.1| SMC domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523364|gb|ADJ21833.1| SMC domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 455 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 114/285 (40%), Positives = 160/285 (56%), Gaps = 5/285 (1%) Query: 93 ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152 E R ++I+ L +L I W+ P+MD +F+G ERRRFLDR++ D Sbjct: 167 ERAPSERGRIVRIDGTAQSGSGVLADYLEIVWVTPAMDGLFTGPGSERRRFLDRLILCFD 226 Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 +R FER M RNRLL +G D S S E MAE GV + AR+E + A++ ++ Sbjct: 227 HGYRTIAGRFERAMTSRNRLLADGVRDDSQLSGFERVMAETGVAVAAARLEAVAAMAQIV 286 Query: 213 ---MEYVQKENFPHIKLSLTGFLDGKFDQ-SFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 E FP L G ++ + S ++ YA+ L R+ D + RTL GP Sbjct: 287 GKRRERDPNSAFPWSSFRLEGSIEDSLQRLSAVEAEDLYAQTLRQTRERDRAASRTLDGP 346 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFAPILLLDEISAHLD 327 HRSDLIV++ K + H STGEQK +L+G+ LAHA L+ G APILLLDEI+AHLD Sbjct: 347 HRSDLIVEHGPKGLAARHCSTGEQKALLLGLVLAHAELLTERQEGAAPILLLDEITAHLD 406 Query: 328 EDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 D+R ALF + +G+Q +MTGTDK+ F++L A+F + + Sbjct: 407 ADRRAALFDEILHLGAQAWMTGTDKNAFEALAGRARFWAVQEGKI 451 Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 3/113 (2%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +N + ++ L ++ FR+YA+ + DA + VG NG GKTN+LEA+S LSPG+G RR + Sbjct: 6 SNALWVERLQLTNFRSYAAANVATDAGPQVIVGANGSGKTNLLEALSLLSPGQGLRRVPF 65 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 +D+ R G F+ AR + G DI L +VR L +D ++ Sbjct: 66 SDLVRSGGDGGFAVAARAHTLAGATDIGTGLRA---TTVRSLSGDDDLLSSPS 115 >gi|283782560|ref|YP_003373314.1| DNA replication and repair protein RecF [Gardnerella vaginalis 409-05] gi|283442151|gb|ADB14617.1| DNA replication and repair protein RecF [Gardnerella vaginalis 409-05] Length = 433 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 78/391 (19%), Positives = 144/391 (36%), Gaps = 43/391 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + FR++ + F+ + G+NG+GKTNI+EA+ G R +S + Sbjct: 1 MYISRIALDTFRSWNHIICDFNPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPL 60 Query: 65 TRIG---------------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 + G + + S A +E I L + Sbjct: 61 IKKGYEKSIIRINTINNDINYKKDETNTGLSNIASLESNLNQTTYEIDLYVKGSN---RA 117 Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 IN V ++ L I P + G RR F+D+ + P + + + +F+ Sbjct: 118 HINSGKALYVKDIVGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLIPNYVQLLQEFK 177 Query: 164 RLMRGRNRLLTEGY--------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215 + + R LL S + E G+ + AR E + ++ Sbjct: 178 HISKQRAALLKNIRDFSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVQIINKYFKNI 237 Query: 216 VQ----KENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM----DSMSRRTLI 266 ++ +EN I + S L K K E K+ + + + LI Sbjct: 238 IKSFTNEENTEIIYVPSFEEVLFEKKSDENIEDKNELFSKISEHFQRIYDGELARGCNLI 297 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 GPHR D+ + + S GE + + +A + + PI++LD++ A L Sbjct: 298 GPHRDDIDFAINNISAK-DFASNGESWTIAIASKMALCKALEEKNNDKPIVILDDVFAQL 356 Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 DE++R + + Q+F+T + S + Sbjct: 357 DENRRIRILNFALN-QGQVFITTSSLSDIPN 386 >gi|298253029|ref|ZP_06976821.1| RecF pathway recombinational DNA repair ATPase [Gardnerella vaginalis 5-1] gi|297532424|gb|EFH71310.1| RecF pathway recombinational DNA repair ATPase [Gardnerella vaginalis 5-1] Length = 433 Score = 225 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 78/391 (19%), Positives = 144/391 (36%), Gaps = 43/391 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + FR++ + F+ + G+NG+GKTNI+EA+ G R +S + Sbjct: 1 MYISRIALDTFRSWNHIICDFNPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPL 60 Query: 65 TRIG---------------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 + G + + S A +E I L + Sbjct: 61 IKKGYEKSIIRINTINNDINYKKDETNTGLSNIASLESNLNQTTYEIDLYVKGSN---RA 117 Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 IN V ++ L I P + G RR F+D+ + P + + + +F+ Sbjct: 118 HINSGKALYVKDIVGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLIPNYVQLLQEFK 177 Query: 164 RLMRGRNRLLTEGY--------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215 + + R LL S + E G+ + AR E + ++ Sbjct: 178 HISKQRAALLKNIRDFSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVKIINKYFKNI 237 Query: 216 VQ----KENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM----DSMSRRTLI 266 ++ +EN I + S L K K E K+ + + + LI Sbjct: 238 IKSFTNEENTEIIYVPSFEEVLFEKKSDENIEDKNELFSKISEHFQRIYDGELARGCNLI 297 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 GPHR D+ + + S GE + + +A + + PI++LD++ A L Sbjct: 298 GPHRDDIDFAINNISAK-DFASNGESWTIAIASKMALCKALEEKNNDKPIVILDDVFAQL 356 Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 DE++R + + Q+F+T + S + Sbjct: 357 DENRRIRILNFALN-QGQVFITTSSLSDIPN 386 >gi|297193293|ref|ZP_06910691.1| recombination protein F [Streptomyces pristinaespiralis ATCC 25486] gi|297151726|gb|EDY62300.2| recombination protein F [Streptomyces pristinaespiralis ATCC 25486] Length = 286 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 121/276 (43%), Gaps = 16/276 (5%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 + + + L++++FR+YA + + D T FVG NG GKTN++EA+ +L+ R +S Sbjct: 10 AHTMHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLASHRVSSD 69 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 A + R+G+ A +G ++LE R+ R +R D L +R Sbjct: 70 APLVRMGADRAVIRAAVTQGERSQL---VELELNPGRANRARINRSSQVRPRDVL-GIVR 125 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---- 177 P + G ERRRFLD +V A PR D+ER+++ RN LL Sbjct: 126 TVLFAPEDLSLVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARR 185 Query: 178 -----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 D S + +A G ++ R+++I AL L + + ++L Sbjct: 186 HGGRGMDLSTLDVWDQHLARAGAEVTAQRLDLIAALQPLADKAYEALAPGGGPVALEYRS 245 Query: 233 D-GKFDQSF--CALKEEYAKKLFDGRKMDSMSRRTL 265 G DQ+ AL E+ L + RK + TL Sbjct: 246 SAGPMDQAHGREALFEQLTAALAEVRKQEIERGVTL 281 >gi|317499298|ref|ZP_07957571.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium 5_1_63FAA] gi|316893467|gb|EFV15676.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium 5_1_63FAA] Length = 267 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 119/272 (43%), Gaps = 13/272 (4%) Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 I+ + IR +L + + P +I ERR+FLD + ++ + ++ ++ + Sbjct: 3 IDRIPIRRSSDLLGQIPVILFSPEDLKIVKSGPSERRKFLDIELSQMERLYLYQLTNYNK 62 Query: 165 LMRGRNRLLTEGYFDSSW---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 ++ RN LL + F ++ + + Q+ + G ++ R + I L + + K Sbjct: 63 ILVQRNNLLKQIRFQNNLIETLEAWDIQLVKYGSEVIKYREKFIKHLGEVCQKIHNKLTG 122 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 K+ L D +D Y +L R+ D T +GPHR D+ Sbjct: 123 GKEKILLEYDRDVGYD--------SYLTELAKKRQKDLKYSTTTVGPHRDDISFIVNGID 174 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 I +GS G+Q+ + + LA +L+ +PILLLD++ + LD +++ L + D Sbjct: 175 IR-KYGSQGQQRTAALSLKLAQIQLMREVMKESPILLLDDVLSELDSNRKTYLLESIKDT 233 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 + I TG D+ + L + +I + + Sbjct: 234 QTIITCTGLDEFISKHLP-IQRMFQIKAGKIV 264 >gi|309799251|ref|ZP_07693499.1| DNA replication and repair protein RecF [Streptococcus infantis SK1302] gi|308117096|gb|EFO54524.1| DNA replication and repair protein RecF [Streptococcus infantis SK1302] Length = 214 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 6/206 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L+I +FRNY + F+ + +FVG N GKTN+LE+I FL+ R R + ++ Sbjct: 1 MWLKKLSIKQFRNYQDTEIEFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +V G+ ++ LE R ++N + + + H+ + Sbjct: 61 IQFEEQQL-----QVSGILQKRTTTVPLEIDLTPKGRITKVNHLKQARLSDYIGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183 P ++ G RR+F+D + I P + + + +++ RN L D ++ Sbjct: 116 FAPEDLQLVKGAPAIRRKFIDMELGQIKPIYLSDLSSYNHVLKQRNTYLKSANQIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMINALS 209 S ++ Q+ + G ++ + R E I S Sbjct: 176 SVLDDQLVDYGCRVMVHREEFIKKWS 201 >gi|312878755|ref|ZP_07738555.1| DNA replication and repair protein RecF [Aminomonas paucivorans DSM 12260] gi|310782046|gb|EFQ22444.1| DNA replication and repair protein RecF [Aminomonas paucivorans DSM 12260] Length = 352 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 151/369 (40%), Gaps = 22/369 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ + L + +RN + + + +G NG GKTN+LEA+ L+ F A V Sbjct: 1 MRFRDLEVHRYRNLEDREITWSPGINVLLGPNGAGKTNLLEAMDLLAGWGPF-GDRPASV 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+EG E + + R L+ +R ++ L + Sbjct: 60 VPWEGSGDTWVRGRLEGEE------TAVASVQVRGRTLLRWGGSPVR-ATQMRTSLPVLA 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + G + +RRR LD++ + P + R+ D+ R +R R L G D Sbjct: 113 FLPDSLSVVEGSASQRRRLLDQVGALVYPPYALRLHDYRRALRQRTACLRRGERDDLVLR 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +A LGV + AR ++ L+S + + P ++L G + S K Sbjct: 173 V----LAPLGVWLWRAREDVARRLASRLEGVGPLLSAP-LELRYHRGGGGWEEDS----K 223 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E++ + L R + +SR L+GP R DL+ K S G ++ V + LA A Sbjct: 224 EDFRRGLLRHRDRERLSRTPLVGPQRDDLVF-LSGKIPAAERFSRGHRRRAAVALMLASA 282 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 ++ + P+LLLDE++A LD + + LF + G Q+F D Sbjct: 283 GVVRDALRRDPVLLLDEVTAELDGEGKGILFSSLEATGWQVFAATADADAP----LPGAV 338 Query: 365 MRISNHQAL 373 RI + Sbjct: 339 YRIEGGKVF 347 >gi|42525748|ref|NP_970846.1| DNA replication and repair protein RecF [Treponema denticola ATCC 35405] gi|41815759|gb|AAS10727.1| DNA replication and repair protein RecF [Treponema denticola ATCC 35405] Length = 360 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 78/369 (21%), Positives = 144/369 (39%), Gaps = 17/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + FRN + + + VG NG GKTN LEA+ S G FR S A + Sbjct: 1 MPFLSASFYNFRNLENATVDISSPEVFLVGKNGQGKTNFLEALYVSSYGTSFRTRSLAQI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F E ISI ++ + +Q N I+ EL + Sbjct: 61 CTKDEKEFSIRALYKESDNISHTISIIIQD----KKKDIQKNFKKIKNSKELISTIPCIL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 G +R F+D+ V + ++ + + ++ RN +L + +S Sbjct: 117 FHGDDIEFAVGTPSRKRFFIDQSVSLCNSDFIEVLVKYSKALKSRNVILEQKK--ASLLD 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-CAL 243 SI+ A L + I R ++ + + + ++S ++ + S Sbjct: 175 SIDEIFASLALLITNERKNIVEEYAKHF-------SLIYEEISGVSGVEMVYRPSVKVES 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E+ L + R+ D + R + GPHR + DK S G+++++ + + + Sbjct: 228 EEDLLILLAEKRQNDLIDRTSSTGPHRDRIHF-IKDKKPFTERASNGQRRLISLVLRMIQ 286 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETA 362 A++ S TG PI L+D+I LD +KR ++ Q+F T + + E Sbjct: 287 AKIYSEKTGRKPIFLMDDILLELDPEKRQKFMELLPPYE-QLFCTFLPGEPYKNYQKENT 345 Query: 363 KFMRISNHQ 371 K + + + Sbjct: 346 KIFFVEDGK 354 >gi|297243222|ref|ZP_06927157.1| RecF pathway recombinational DNA repair ATPase [Gardnerella vaginalis AMD] gi|296888756|gb|EFH27493.1| RecF pathway recombinational DNA repair ATPase [Gardnerella vaginalis AMD] Length = 433 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 73/391 (18%), Positives = 141/391 (36%), Gaps = 43/391 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + FR++ + F + G+NG+GKTNI+EA+ G R +S + Sbjct: 1 MYISRIALDTFRSWNHIICDFKPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPL 60 Query: 65 TRIG-SPSFFST--------------------FARVEGMEGLADISIKLETRDDRSVRCL 103 + G S + +E I L + Sbjct: 61 IKKGYEKSIIRINTINNEINYKKDETNTDLNNISSLESNLDKTTYEIDLYLKGSN---RA 117 Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 IN V ++ L I P + G RR F+D+ + P + + + +F+ Sbjct: 118 HINSGKALYVKDIIGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLVPNYVQILQEFK 177 Query: 164 RLMRGRNRLLTEGY--------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215 + + R LL S + E G+ + AR E + ++ Sbjct: 178 HISKQRAALLKNIRDYSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVQIINKYFKNI 237 Query: 216 VQKENFPHIK--LSLTGFLDGKFDQSFCALKE---EYAKKLFDGRKM----DSMSRRTLI 266 ++ + + F + F+++ E E K+ + + + LI Sbjct: 238 IKSFTNEENTGIIYVPSFEEVLFEKNSEENVENKNELFSKISEHFQRIYEGELARGCNLI 297 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 GPHR D+ + + S GE + + +A + + PI++LD++ A L Sbjct: 298 GPHRDDIDFVINNISAK-DFASNGESWTIAIASKMALCKALEEKNNNKPIVILDDVFAQL 356 Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 DE++R + + Q+F+T + S + Sbjct: 357 DENRRIRILNFALN-QGQVFITTSSLSDIPN 386 >gi|196228820|ref|ZP_03127686.1| DNA replication and repair protein RecF [Chthoniobacter flavus Ellin428] gi|196227101|gb|EDY21605.1| DNA replication and repair protein RecF [Chthoniobacter flavus Ellin428] Length = 352 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 145/356 (40%), Gaps = 21/356 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + FR + + + F VG N GKT++LEA L + R A V + Sbjct: 13 LRGLKVRHFRCFDAREVEFAPGLNFIVGPNAHGKTSLLEAACILLRLQSPRITRLAHVIQ 72 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 F V+G G+ + R + L +++V + E + R+ + Sbjct: 73 HERRGFV-----VDGYFGVRHLQFYF----SRERKKLALDEVEQKSAREYLEIGRVVYFA 123 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 S + G RRRFLD + D +R+ + D+ER +R RN LL ++ Sbjct: 124 NSDIELVRGSGDGRRRFLDFVATQRDGTYRQALRDYERALRSRNLLLKSSSPRWREIAAF 183 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + + G ++ AR ++I L + + + +L L G E+ Sbjct: 184 DEPLLSAGQRVAAARAKLIEELQPEAEKAHRGISGAREQLQLEYVPGGG---------ED 234 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + L D+ R+T GPHR D+ + + + S G+Q+ +++ + L ARL Sbjct: 235 FPATLAAAHNEDARLRQTSAGPHRDDVRFMLNGQ--SSSFASEGQQRTLVLALKLGAARL 292 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + AP+LLLD+I L + R A +Q +T T + E + Sbjct: 293 LEQRFESAPVLLLDDIFGEL-DLDRRAALLAALPASAQKIITTTHLDWLPAEAEAS 347 >gi|46200023|ref|YP_005690.1| recF protein [Thermus thermophilus HB27] gi|46197650|gb|AAS82063.1| recF protein [Thermus thermophilus HB27] Length = 343 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 131/347 (37%), Gaps = 24/347 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ FRN A + VG N GKT++L I G AD+ Sbjct: 1 MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGE--VPLGLADL 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + A VE G LE R R + +N + + L + Sbjct: 59 VRFGEEEAW-LHAEVETELGAYR----LEHRLGPGGREVLLNGKRV-SLRALWELPGSVL 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P G ERR +LDR++ R+ + +E+ +R RN LL G S Sbjct: 113 VSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAGG---EGLS 169 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++A G +I R + + ++ E L L Sbjct: 170 AWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLE-----------ETAG 218 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L R + +TL+GPHR DL+ + S GE K + + + LA Sbjct: 219 EGVLRALEASRAEERERGQTLVGPHRDDLVFLLEGRP-AHRFASRGEAKTLALALRLAEH 277 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 RL+ G P+LL+DE LDE +R A+ + Q + G + Sbjct: 278 RLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALP-QAILAGLE 323 >gi|297622419|ref|YP_003703853.1| DNA replication and repair protein RecF [Truepera radiovictrix DSM 17093] gi|297163599|gb|ADI13310.1| DNA replication and repair protein RecF [Truepera radiovictrix DSM 17093] Length = 352 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 142/353 (40%), Gaps = 17/353 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L +RN + R+ F T VG N GK+N+LEA+ L A+ Sbjct: 1 MRLLSLQQLNYRNLNTPRVTFGGGVTAIVGRNAAGKSNLLEAVY-LGLTGELPHGKIAEA 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R+G F + ++E GL+ + + L + ++++ +R EL + Sbjct: 60 VRLGESEGFVS-VKLEHGGGLSTVQVGL----APGRKTVRLDGQSVRAF-ELARVSAAVL 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G RR +LD ++ + R+ ++ R++ RN L + Sbjct: 114 ITPEDAELVHGPPALRRGYLDTLLSRLSLRYALLQREYTRVVEQRNAALKSLPYGDPTLE 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + LG +I R + + + + + L ++ A Sbjct: 174 VWTERFVALGDEITALRERALARVGEVARASYAEISGDDKPLGVS--------HRAAAQG 225 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L + + T++GPHR DL + ++ A+GS GE + V + + +A Sbjct: 226 VGLRAALAATQHEERARGVTVVGPHRDDLELTLAGHSV-QAYGSRGEARTVALALRVAEY 284 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 L+ AP+LL+D+ +A LD +R L ++ Q ++GT+ + Sbjct: 285 TLLQEKLREAPVLLIDDFTAELDASRREFLLQLAARAP-QALVSGTEAPPHAA 336 >gi|55980233|ref|YP_143530.1| recombination protein F [Thermus thermophilus HB8] gi|55771646|dbj|BAD70087.1| RecF protein [Thermus thermophilus HB8] Length = 343 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 131/347 (37%), Gaps = 24/347 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ FRN A + VG N GKT++L I G AD+ Sbjct: 1 MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGE--VPLGLADL 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + A VE G LE R R + +N + + L + Sbjct: 59 VRFGEEEAW-LHAEVETELGAYR----LEHRLGPGGREVLLNGKRV-SLRTLWELPGSVL 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P G ERR +LDR++ R+ + +E+ +R RN LL G S Sbjct: 113 VSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAGG---EGLS 169 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + ++A G +I R + + ++ E L L Sbjct: 170 AWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLE-----------ETAG 218 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L R + +TL+GPHR DL+ + S GE K + + + LA Sbjct: 219 EGVLRALEASRAEERERGQTLVGPHRDDLVFLLEGRP-AHRFASRGEAKTLALALRLAEH 277 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351 RL+ G P+LL+DE LDE +R A+ + Q + G + Sbjct: 278 RLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALP-QAILAGLE 323 >gi|224283954|ref|ZP_03647276.1| Recombinational DNA repair ATPase [Bifidobacterium bifidum NCIMB 41171] gi|313141106|ref|ZP_07803299.1| recombination protein RecF [Bifidobacterium bifidum NCIMB 41171] gi|313133616|gb|EFR51233.1| recombination protein RecF [Bifidobacterium bifidum NCIMB 41171] Length = 420 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 76/394 (19%), Positives = 138/394 (35%), Gaps = 62/394 (15%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 L I G NG+GKTNI+EAI LS G R +S + + G + A +E + Sbjct: 2 LDLTPGINILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPLVQRG-EHAATIRANIESV 60 Query: 83 -------------------------EGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 +++ + R +IN R + E+ Sbjct: 61 TDPEPADDGVNTSADAVDISDMKPVRQTQTTTLEATIAARGANRA-RINGGQSRYLREIL 119 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-- 175 L P ++ +G RR F++++ + P + R+ F + + R LL + Sbjct: 120 GTLPTVSFTPEDQQLVAGDPAVRRSFINQVASLLIPGYANRLQSFTHVAKQRAALLKQLG 179 Query: 176 ------GYFDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--------- 218 D++ Q E GV ++ R +I L+ + Sbjct: 180 QWQRAGSPIDAALSGLEIWTGQFIEAGVALSRDRQRIIAELNKSFGPLYARLAGVAGDLP 239 Query: 219 ----------ENFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267 + + F + Q+ L ++ ++++ G + LIG Sbjct: 240 SNAEIQDAAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQRIYPG---EVSRGVNLIG 296 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 P R DL+V S GE + + + +A R + P+++LD++ A LD Sbjct: 297 PQRDDLLVTLNGMP-AREFASNGEMWTLALALKMAQYRALCEYFDTRPVVILDDVFAQLD 355 Query: 328 EDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 E +R + R Q+ +T +S L Sbjct: 356 ESRRTEILRFAAA-QDQVLITAAAESDIPILPAN 388 >gi|332071306|gb|EGI81801.1| DNA replication and repair protein recF [Streptococcus pneumoniae GA17545] Length = 199 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 94/203 (46%), Gaps = 6/203 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ SI LE + R ++N + + + H+ + Sbjct: 61 IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183 P ++ G RR+F+D + I P + + ++ +++ RN L D ++ Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175 Query: 184 SSIEAQMAELGVKINIARVEMIN 206 S ++ Q+ + G ++ R++ I Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIK 198 >gi|325475139|gb|EGC78324.1| DNA replication and repair protein RecF [Treponema denticola F0402] Length = 360 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 77/369 (20%), Positives = 144/369 (39%), Gaps = 17/369 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + FRN + + + VG NG GKTN LEA+ S G FR S A + Sbjct: 1 MPFLSASFYNFRNLENATVDISSPEVFLVGKNGQGKTNFLEALYVSSYGTSFRTRSLAQI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F E ISI ++ + +Q N I+ EL + Sbjct: 61 CTKDEKEFSIRALYKESDNISHTISIIIQD----KKKDIQKNFKKIKNSKELISTIPCIL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 G +R F+D+ V + ++ + + ++ RN +L + +S Sbjct: 117 FHGDDIEFAVGTPSRKRFFIDQSVSLCNSDFIEALVKYSKALKSRNVILEQKK--ASLLD 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-CAL 243 SI+ + L + I R ++ + + + ++S ++ + S Sbjct: 175 SIDEIFSSLALLITNERKNIVEEYAKHF-------SLIYEEISGVSGVEMVYRPSIKVES 227 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E+ L + R+ D + R + GPHR + DK S G+++++ + + + Sbjct: 228 EEDLLILLAEKRQNDLIDRTSSTGPHRDRIHF-IKDKKPFTERASNGQRRLISLVLRMIQ 286 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETA 362 A++ S TG PI L+D+I LD +KR ++ Q+F T + + E Sbjct: 287 AKIYSEKTGRKPIFLMDDILLELDPEKRQKFMELLPPYE-QLFCTFLPGEPYKNYQKENT 345 Query: 363 KFMRISNHQ 371 K + + + Sbjct: 346 KIFFVEDGK 354 >gi|124026724|ref|YP_001015839.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. NATL1A] gi|123961792|gb|ABM76575.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. NATL1A] Length = 348 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 87/341 (25%), Positives = 148/341 (43%), Gaps = 16/341 (4%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 + I +G NGVGK+N+LE+I LS R R D+ A +E Sbjct: 1 MELTENRLIVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLIYWDQDQAC-LSAMIED- 58 Query: 83 EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142 D + LE + + + ++ R +D L +R + G RR Sbjct: 59 ----DQKLSLELNRKGGRKAYKNDKLLNRQID-LIGPMRSVGFSALDLELIRGEPSLRRH 113 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGVKI 197 +LDR+V ++P + + F RL+R R++L +SS S + QMA + +I Sbjct: 114 WLDRIVQQLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLDSFDMQMALVSTRI 173 Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGR 255 + R +++ L + + Q + KL +T K + +S +E ++L + R Sbjct: 174 HRRRRRILDRLLPIASSWQQHLSNSQEKLDITYLPGSKLEGEESERVWRESIERQLLEMR 233 Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315 + ++ +GPHR D+ D GS G+Q+ +++ + LA LI G AP Sbjct: 234 SEEEITGNCRVGPHRDDVQFSIND-VDARRFGSAGQQRTIVLSLKLAELELIKMVYGKAP 292 Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 ILLLD++ A LD ++ L V Q ++ T F+ Sbjct: 293 ILLLDDVLAELDPKRQLLLLEAVGQK-HQCLISATHLESFE 332 >gi|257455166|ref|ZP_05620404.1| DNA replication and repair protein RecF [Enhydrobacter aerosaccus SK60] gi|257447499|gb|EEV22504.1| DNA replication and repair protein RecF [Enhydrobacter aerosaccus SK60] Length = 390 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 90/397 (22%), Positives = 165/397 (41%), Gaps = 44/397 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L I FRN ++ L + +F+G NG GKT++LE+I LS G+ FR Sbjct: 1 MQIIQLAIHHFRNLHTIELQPSS-CNVFLGQNGSGKTSLLESIYLLSRGKSFRHHQPRHY 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + FAR+ ++ + D + L++N + L + L Sbjct: 60 IEHGFSD-TTVFARLN-----HGQTVAIAKSQD-ATTQLRLNGQSLVTQSPLAQLLPTLL 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182 L P S RR LD + F ++ + ++RL++ RN LL + + S Sbjct: 113 LEPVSLAQLEDGSQARREMLDWLGFHVEQSFHPNWLAYQRLLKQRNSLLKQNVGNVSLTS 172 Query: 183 -----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDG 234 S+ + Q+++ KI+ AR ++I + VQK + ++L T D Sbjct: 173 LQQHELSAWDYQLSQHAEKIHQARADIIEQWQPHFLAQVQKFLPQYAEKLRLRYTPGFD- 231 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV------------DYCDKAI 282 + A L + D T +G HRSD+ V + + Sbjct: 232 --------TEAGLAITLANRLASDIELGYTRMGCHRSDINVVLDLVHTDAAGHKHKQTLL 283 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 S GE+K++++ + L+ L++ P++L+D+I+A LD D L + + Sbjct: 284 ATDMLSRGEKKLLVMALRLSQLPLLNQVD-KVPLVLVDDITAELDNDALMLLLTGLKQVN 342 Query: 343 SQIFMTGTDKSVFDSL----NETAKFMRISNHQALCI 375 SQ+F+T + + +S+ + K ++ + Sbjct: 343 SQLFITSLTQDIVESIQKIWQDNIKLFQVEQGSIRQL 379 >gi|78211946|ref|YP_380725.1| DNA replication and repair protein RecF [Synechococcus sp. CC9605] gi|97181068|sp|Q3AML2|RECF_SYNSC RecName: Full=DNA replication and repair protein recF gi|78196405|gb|ABB34170.1| DNA replication and repair protein RecF [Synechococcus sp. CC9605] Length = 364 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 155/358 (43%), Gaps = 16/358 (4%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN+ L+L + +G NG+GK+N+LEA+ L R R ++ D+ + +P Sbjct: 4 FRNHTVLQLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSNDRDLIQWDTPQALI 63 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 +G ++LE R + + ++ R +D L LR + Sbjct: 64 RADVGDGDR------LELELRRQGGRQARRNGKLLDRQLD-LIGPLRCIGFSALDLDLVR 116 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SWCSSIEAQM 190 G RR++LDR+V ++P + M RL+R R++L + S + + + QM Sbjct: 117 GEPALRRQWLDRVVLQLEPVYADLMARLNRLLRQRSQLWRQRQISSGERHALLEAFDVQM 176 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYA 248 A + +I+ R ++ L + + + L L + D + + Sbjct: 177 ALVSTRIHRRRQRALHRLEPIAQRWQTHLSGGTETLELHYKPGSRLDGEDAEEPWRLAIE 236 Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308 ++L R+ + +GPHR ++ + + GS G+Q+ +++G+ LA L++ Sbjct: 237 EQLRQQREEEERLGSCRVGPHRDEIAL-LLGGSPARRFGSAGQQRSLVLGLKLAELELVT 295 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFM 365 G P+LLLD++ A LD ++ L V + Q ++ T F + A+ + Sbjct: 296 QLCGEPPLLLLDDVLAELDPTRQQLLLEAVGE-SHQCLVSATHLEGFGGGWQQQAQIL 352 >gi|260890885|ref|ZP_05902148.1| RECF protein [Leptotrichia hofstadii F0254] gi|260859438|gb|EEX73938.1| RECF protein [Leptotrichia hofstadii F0254] Length = 324 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 68/323 (21%), Positives = 143/323 (44%), Gaps = 8/323 (2%) Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEG 81 +L FD + G NG GKT+++EA+ FL+ G+ FR + R + + F + Sbjct: 4 KLKFDRYFNLIYGKNGQGKTSLIEAVHFLATGKSFRTKKVKE-IRKYNLNRLIVFGKYRH 62 Query: 82 MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR 141 + L++ +I ++ +D+ + I+ + + L I +P + G RR Sbjct: 63 KD-LSENAIAIDVNEDK--KDFYIDREKNKYI-NYVGLLNIISFIPEDIELIIGNPGVRR 118 Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 F + + + + +++FE++++ RN+L+ E + E G+ I + R Sbjct: 119 NFFNYEISQAKKEYLQSIVNFEKILKVRNKLIKEKKTGEEIYKIYNEKFIEEGLNIVLNR 178 Query: 202 VEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 E I LS L+ +K +KL FL ++ LKE++ + + Sbjct: 179 REFIKKLSILLNLNYRKLFDENSELKLKYDCFLGDVEKKTREELKEKFEVLCKRKSEREK 238 Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 +L+GP + D I + K + S GE+K ++ + ++ ++ PI ++ Sbjct: 239 FLGYSLLGPQKDDFIFELNGKNAKA-YSSQGEKKSIIFSLKISEIDILIKEKKEYPIFIM 297 Query: 320 DEISAHLDEDKRNALFRIVTDIG 342 D+I+++ DE ++ ++ + Sbjct: 298 DDIASYFDEVRKKSILSYFVNKK 320 >gi|310286523|ref|YP_003937781.1| replication and repair protein recF [Bifidobacterium bifidum S17] gi|309250459|gb|ADO52207.1| replication and repair protein recF [Bifidobacterium bifidum S17] Length = 420 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 137/393 (34%), Gaps = 60/393 (15%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 L I G NG+GKTNI+EAI LS G R +S + + G + A +E + Sbjct: 2 LDLTPGINILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPLVQRG-EHAATIRANIESV 60 Query: 83 EGLADISIKLETRDD------------------------RSVRCLQINDVVIRVVDELNK 118 + T D R +IN R + E+ Sbjct: 61 TDPEPADDGVNTSADAVDISDMKPVRPTQTTTLEATIAARGANRARINGGQSRYLREILG 120 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175 L P ++ +G RR F++++ + P + R+ F + + R LL + Sbjct: 121 TLPTVSFAPEDQQLVAGDPAVRRSFINQVASLLIPGYANRLQSFTHVAKQRAALLKQLGQ 180 Query: 176 -----GYFDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---------- 218 D++ Q E GV ++ R +I L+ + Sbjct: 181 WQREGSPIDAALSGLEIWTGQFIEEGVALSRDRQRIIAELNKSFGPLYARLAGVAGDLPS 240 Query: 219 ---------ENFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 + + F + Q+ L ++ ++++ G + LIGP Sbjct: 241 NAEIQDAAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQRIYPG---EVSRGVNLIGP 297 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 R DL+V S GE + + + +A + + P+++LD++ A LDE Sbjct: 298 QRDDLLVTLNGMP-AREFASNGEMWTLALALKMAQYQALCEYFDTRPVVILDDVFAQLDE 356 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 +R + R Q+ +T +S L Sbjct: 357 SRRTEILRFAAA-QDQVLITAAAESDIPILPAN 388 >gi|320449208|ref|YP_004201304.1| RecF protein [Thermus scotoductus SA-01] gi|320149377|gb|ADW20755.1| RecF protein [Thermus scotoductus SA-01] Length = 340 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 145/346 (41%), Gaps = 24/346 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ FRN A VG N GKT++L I L+ G R AS AD+ Sbjct: 1 MRLLVFRQRNFRNLALSAFQPPQGLFALVGGNAQGKTSLLLGIH-LALGGEVR-ASLADL 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + A VE GL I E R R + +N+ + + L++ Sbjct: 59 IRFGEEEAW-LQAEVETELGLYRI----EQRLRPEGREIVLNEKAV-SLRALHELPGSVL 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 ++P + G ERR FLDR++ R+ + +E+ +R RN LL G + Sbjct: 113 VLPEDVEVVLGSREERRTFLDRLIGRFSRRYTALLSAYEKALRQRNALLKAGG---NGLE 169 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A G +I R + + + L + G Sbjct: 170 VWDQELARYGAEIMAFRRRFLRRFLPIFQSVHRSLAPGEAGLLVEETAQG---------- 219 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ + L R+ + + +TL+GPHR DL+ + + GS GE K V + + LA Sbjct: 220 -EFLEALRARREEELLKGQTLVGPHRDDLVFLLSGRPV-HRFGSRGEAKGVALALRLAEH 277 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 RL+S G AP+LL+DE S LDE KR A+ + Q + G Sbjct: 278 RLLSEHHGEAPLLLVDEWSEELDEGKRQAVLAYTRTLP-QAILAGL 322 >gi|317050202|ref|YP_004111318.1| DNA replication and repair protein RecF [Desulfurispirillum indicum S5] gi|316945286|gb|ADU64762.1| DNA replication and repair protein RecF [Desulfurispirillum indicum S5] Length = 343 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 83/350 (23%), Positives = 144/350 (41%), Gaps = 17/350 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + + FR A L F G NG GKT+ LE IS + G+ FR + + R Sbjct: 2 LTETRVRNFRCIADAVLSFTPGINALCGVNGSGKTSFLEVISICANGKSFRTNTLRECVR 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 GS F T D I ++VR L I + + + + L Sbjct: 62 KGSDGFSLTL--------ENDRHILQTFLLHKNVRRLLIGEHRPERLSQYININTVLVLS 113 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P + + S RR+F+DR VF P + + R+++ RN LL + D S Sbjct: 114 PEDIDLVAHSSGMRRKFIDRGVFEQHPEYLSTLSYLHRILKNRNALLRQK--DHSTLPYW 171 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + + ++I+ R + L + + + ++P +S+T G + + + Sbjct: 172 NDLLCQYALQIHEYRKKYTQQLQLSVNSIISQMDYPK-GISITYINSGDDEYTDT---QA 227 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 + + L + TLIGPH+ ++ V D+ + S G+QK+V + + LA A L Sbjct: 228 FLRALEKKYSDEKRYGYTLIGPHKDEITVTI-DELSAGKYASYGQQKMVAMIMKLAQAEL 286 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 I P+LL+D+++A LD + I+ Q+ +T + Sbjct: 287 IQQHQKE-PVLLVDDLAAGLDAAALKRVAAILQSYQ-QVILTTIEGENLP 334 >gi|301165374|emb|CBW24945.1| putative DNA replication and repair protein RecF [Bacteriovorax marinus SJ] Length = 370 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 73/358 (20%), Positives = 157/358 (43%), Gaps = 18/358 (5%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-V 64 KI L ++ FRN + F++ +G+NG GKTNILEA+ LS + FR+ + Sbjct: 5 KISKLQVTNFRNLQPDIIEFNSGINCILGENGNGKTNILEALHVLSTRKSFRKNTAFPQF 64 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 I F+ V E +S+ + D ++ + R +D +++ + Sbjct: 65 LGIDCEQPEIIFSSVFLDEHSNKMSLSAKM-DAKTTHWFVDGQPMKRKLD-----IKLVF 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183 + P F S RR+++D+ + ID +++ + + +R RN LL + Sbjct: 119 INPFDSYAFHNTSSFRRQWMDQHISQIDSNYKKCLSRYNSSLRFRNSLLSKKPAKYLEQI 178 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFC 241 +I+ ++A + R++ ++ + S + ++ +K++L + G Sbjct: 179 RAIDLELARYSCILTNTRLKFLSEIESFCTQTFKEIFSEEHLLKITLDSRVIG------- 231 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 A +++ + L + D + T H+ D ++ + D + + S G+QK+ + + Sbjct: 232 ASEDDIYQMLQERLPKDEIVGHTTYCVHKDDYVLLF-DGLNSFEYCSLGQQKMSYLSLLF 290 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 A+ L P++L+D++S LD+++ L + Q+ +T ++ + L Sbjct: 291 AYIELFRYNFNSFPMVLIDDVSGELDKNRWQKLINYLERSSFQVLITTANEKFKEELE 348 >gi|302336552|ref|YP_003801758.1| DNA replication and repair protein RecF [Spirochaeta smaragdinae DSM 11293] gi|301633737|gb|ADK79164.1| DNA replication and repair protein RecF [Spirochaeta smaragdinae DSM 11293] Length = 358 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 15/368 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + L ++RN + DA VG+NG GK+N+LEAI LS G FR ++ Sbjct: 1 MGFLALKTYQYRNLKDAEVCLDAPRVFLVGENGQGKSNLLEAIYLLSFGSSFRTRRDQEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + G DIS L ++ + + ++++ + EL + Sbjct: 61 IRRGCGELA-----LHGKTAEHDISFLLSGKNG-TTKSIKLDGKPVTDRKELVRIFPAIV 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +G RR F D+ + +P + + ++++ RN L E D Sbjct: 115 FCHDDISFVNGSPERRRWFFDQTMSLHEPLFIDTLRSYRKILKLRNMALKEDRRD--LLD 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + Q+A G++I R E I ++ +K + ++ + K C + Sbjct: 173 VYDIQLARAGMEIQEKRREAIEGFNTTFSSLHEKVSGLEGEMKIAYRPSWKG----CKGE 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E+ L R+ D + + GPHR + + + STG+ +++ + + + A Sbjct: 229 EDVGVLLHRRRESDLEMKTSGSGPHRDRFAFLLEGRDFS-SIASTGQLRLLSLLLRVGQA 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 R G P+LLLD++ LD +R + + QIF T + L Sbjct: 288 RFFYEKCGRRPVLLLDDVLLELDPRRRQRFLGTLPEAD-QIFFTFLPDRQYSELKGNDTM 346 Query: 365 -MRISNHQ 371 +R+ + Sbjct: 347 LLRVKEGE 354 >gi|72382983|ref|YP_292338.1| recombination protein F [Prochlorococcus marinus str. NATL2A] gi|72002833|gb|AAZ58635.1| DNA replication and repair protein RecF [Prochlorococcus marinus str. NATL2A] Length = 348 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 85/341 (24%), Positives = 147/341 (43%), Gaps = 16/341 (4%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 + I +G NGVGK+N+LE+I LS R R D+ A +E Sbjct: 1 MELTENRLIVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLIYWDQDQAC-LSAMIED- 58 Query: 83 EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142 D + LE + + + ++ R +D L +R + G RR Sbjct: 59 ----DQKLSLELNRKGGRKAYKNDKLLNRQID-LIGPMRSVGFSALDLELIRGEPSLRRH 113 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGVKI 197 +LDR+V ++P + + F RL+R R++L +SS S + QMA + +I Sbjct: 114 WLDRIVQQLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLDSFDMQMALVSTRI 173 Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGR 255 + R +++ L + + Q + L +T K + +S +E ++L + R Sbjct: 174 HRRRRRILDRLLPIASSWQQHLSNSQENLDITYLPGSKLEAEESERLWRESIERQLLEMR 233 Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315 + ++ +GPHR D+ D GS G+Q+ +++ + LA LI G +P Sbjct: 234 SEEEITGNCRVGPHRDDVQFSIND-VDARRFGSAGQQRTIVLSLKLAELELIKMVYGKSP 292 Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 ILLLD++ A LD ++ L V Q ++ T F+ Sbjct: 293 ILLLDDVLAELDPKRQLLLLEAVGQK-HQCLISATHLESFE 332 >gi|328946933|ref|YP_004364270.1| DNA replication and repair protein RecF [Treponema succinifaciens DSM 2489] gi|328447257|gb|AEB12973.1| DNA replication and repair protein RecF [Treponema succinifaciens DSM 2489] Length = 373 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 68/378 (17%), Positives = 159/378 (42%), Gaps = 21/378 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + L+ FRN + + ++ FVG NG GK+N+LE++ + + G FR ++V Sbjct: 1 MPFLSLSPYNFRNLCNENIDLSSKEIYFVGKNGQGKSNLLESLYYSAYGSSFRTHVDSEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S G + + ++ ++ + ++ EL + Sbjct: 61 IKKNESE-MSLRCLFREENGTSHTT---SIILKEKLKKIEKDGKILHDRKELINTMPCVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 G RR F+D+ + D + M ++R+++ RN L E ++D Sbjct: 117 YSHEDLDFAVGSPERRRFFIDQSLSMYDVLYIDIMRKYKRILKNRNLSLKEKHYD--LLE 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--------- 235 + + Q+A+ G++I R + + + + + + ++ +S+ K Sbjct: 175 TYDFQLAQNGLEIQKKRKDAVFSFNQIFGKLYEQVTGIS-GVSIKYIPSWKNKSDNLNSP 233 Query: 236 -FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 FD++ ++ + L R+ + + ++ GPHR ++ + + + STG++++ Sbjct: 234 FFDRNIPSV-DYVVDYLSKIREQEKIIGSSISGPHRDKIVFE-KEGIPFVPTASTGQKRL 291 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 + + + A T P+LL+D++ LD +KR + ++ + Q+F T Sbjct: 292 IALILRTGQAVFYKQITSRKPVLLMDDVLLELDPEKRQKVTSLLPEYD-QLFCTFLPGEP 350 Query: 355 FDSLN-ETAKFMRISNHQ 371 + + E+ + +I + + Sbjct: 351 YKNYKRESTRVFKIQDGK 368 >gi|284041474|ref|YP_003391814.1| DNA replication and repair protein RecF [Conexibacter woesei DSM 14684] gi|283945695|gb|ADB48439.1| DNA replication and repair protein RecF [Conexibacter woesei DSM 14684] Length = 370 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 83/354 (23%), Positives = 155/354 (43%), Gaps = 17/354 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + FR+Y + + A T+ G NG GKTN+L+A+ F GR R + ++ Sbjct: 1 MRIVRLALRNFRSYPTAEVELGAGLTVVSGRNGAGKTNLLDALYFGCTGRSARTTNDREL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G E +G ++S+ E+ + L + V + + ++ +S Sbjct: 61 VRFGEQ-VTRVVVMTEADDGAHELSVAFESG---QPKRLMADGVRVERLLDVPGRPLVSV 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL---LTEGYFDSS 181 +P + G RR +D++V A+ P + + + RN L + G ++ Sbjct: 117 FLPDRLELVKGTPSLRRAHIDQVVAALWPARAATRRAYAQALAQRNALVARIRAGGASAA 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240 + + ++A GV + R I ++ + +L L G + +S Sbjct: 177 SLPAWDRELARHGVALMADRAAAIESVQTRFGTIAG-------ELGLDGDPAVAYRPRSR 229 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 A ++L + D T GPHR DL + ++ A+GS G+Q++ L+ + Sbjct: 230 AADAGGLEEELAERHASDLERGFTQHGPHRDDLALT-RERRELRAYGSQGQQRLTLLALL 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354 LA I+ T P++LLD++ + LD ++R L ++ +G Q +T TD Sbjct: 289 LAEREAIAATRDAVPVMLLDDVMSELDRERRGRLVELLRGVG-QSVITTTDLEH 341 >gi|76798667|ref|ZP_00780891.1| DNA replication and repair protein recF [Streptococcus agalactiae 18RS21] gi|76585977|gb|EAO62511.1| DNA replication and repair protein recF [Streptococcus agalactiae 18RS21] Length = 242 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 5/237 (2%) Query: 137 SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGV 195 RR+FLD + I P + + ++ +++ RN L D ++ + ++ Q+A+ G Sbjct: 1 PSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTVLDEQLADYGS 60 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255 ++ R + I AL+ ++ + LS+ +F +++E + +L Sbjct: 61 RVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEF-TDKSSIREHFLNQLSKSH 119 Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315 D + T IGPHR D+ D I S G+Q+ +++ + LA LI T P Sbjct: 120 SRDIFKKNTSIGPHRDDITFFIND--INATFASQGQQRSLILSLKLAEIELIKTVTNDYP 177 Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 ILLLD++ + LD ++ L + + Q F+T T +L + K +S+ Sbjct: 178 ILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLKIFNVSDGTI 233 >gi|254796587|ref|YP_003081423.1| putative DNA replication and repair protein RecF [Neorickettsia risticii str. Illinois] gi|254589828|gb|ACT69190.1| putative DNA replication and repair protein RecF [Neorickettsia risticii str. Illinois] Length = 349 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 106/354 (29%), Positives = 162/354 (45%), Gaps = 20/354 (5%) Query: 5 IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 ++ I + + +FRN+A F+ +H + G NG GKT+ILEAIS LSPG G R AS Sbjct: 1 MRPYITEVLLKDFRNHAFWTASFECRHVLLCGKNGAGKTSILEAISKLSPGLGLRSASNT 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ R GS S + + G L + + R QIN ++ ++ +++ Sbjct: 61 EMIRSGSLS-WEVSLKFAGSADLRGVGMSY----CEDKRITQINGKSVQCFKKVIDLVKV 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P M +F+ RRRF DRMV +P+H ++ +ER R ++L G W Sbjct: 116 MWLTPQMSNLFTTDKSVRRRFFDRMVALSEPQHLENLVMYERFKSERLKILNAG-ASKMW 174 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFC 241 E ++AEL + I ARV I L S F +++ L + D+ Sbjct: 175 LDVNEKKLAELCIAITDARVSFIRQLMSNF----PSRGFGSLEIKLLCPVASAIDKVGSS 230 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 + L R +D+++ + G HR+D + T STGEQK++++GI L Sbjct: 231 QQMQSIQSALERSRAVDTVTGKMQFGVHRTDFLATVRQGDNTARCYSTGEQKLLILGIML 290 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 A I+LLD+I AHLD +A T Q F + D S F Sbjct: 291 AAGE-------LIDIILLDDIFAHLDPQNSSAFLLEATKKNCQFFFSDLDNSKF 337 >gi|254431064|ref|ZP_05044767.1| DNA replication and repair protein RecF [Cyanobium sp. PCC 7001] gi|197625517|gb|EDY38076.1| DNA replication and repair protein RecF [Cyanobium sp. PCC 7001] Length = 391 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 169/371 (45%), Gaps = 15/371 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +++ L + +FRN L L +A + +G NG GK+N+LE + L R R S D+ Sbjct: 24 RLERLELLQFRNITRLELNLEASRLLVLGPNGEGKSNLLEGVELLGSLRTHRTGSDRDLI 83 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + G + AR+ G+ ++ ++LE R R R + N + +L LR Sbjct: 84 QQGC-----SHARIRGLTARGEL-LQLELRH-RGGREARRNGKPLERQLDLLGDLRCVSF 136 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSW 182 + G RR++LDR+V ++P + + + RL+R R++LL G + Sbjct: 137 SALDLELVRGEPAGRRQWLDRVVLQLEPLYGELLSRYGRLLRQRSQLLRRGLGGGEQAGL 196 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSF 240 + + QMA +G +++ R + L L + Q+ + + ++ + D++ Sbjct: 197 LDAFDQQMAVVGTRLHRRRHRALQRLEPLAAHWQQRLSGGRDALAIAYRSGTHLEGDEAE 256 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + +L R + + +GPHR ++ + + +GS G+Q+ +++ + Sbjct: 257 EPWRAALHSQLAAQRDTELRLGQCSVGPHRDEVALSLGGQP-ARRYGSAGQQRTLVLALK 315 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LN 359 LA L+ + G P+LLLD++ A LD ++ L V + G Q ++ T F + Sbjct: 316 LAELELVRSVVGDPPLLLLDDVLAELDPTRQQLLLEAVGE-GHQCLVSATHLGAFSAGWQ 374 Query: 360 ETAKFMRISNH 370 + ++ + + Sbjct: 375 QRSQIVHLRAG 385 >gi|260434638|ref|ZP_05788608.1| DNA replication and repair protein RecF [Synechococcus sp. WH 8109] gi|260412512|gb|EEX05808.1| DNA replication and repair protein RecF [Synechococcus sp. WH 8109] Length = 345 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 144/341 (42%), Gaps = 16/341 (4%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 +G NG+GK+N+LEA+ L R R ++ D+ + +P + G + +K Sbjct: 2 VIGPNGIGKSNLLEAVELLGSLRSHRCSNDRDLIQWDAPEALIRA----DVGGGDRLELK 57 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 L R + N ++ +L LR + G RR++LDR+V + Sbjct: 58 LRRHGGRQAKR---NGKLLDRQLDLIGPLRCIGFSALDLDLVRGEPALRRQWLDRVVLQL 114 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDS----SWCSSIEAQMAELGVKINIARVEMINA 207 +P + M RL+R R++L + S + + + QMA + +I+ R ++ Sbjct: 115 EPVYADLMARLNRLLRQRSQLWRQRQVSSGERHALLDAFDVQMALVSTRIHRRRQRALHR 174 Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTL 265 L + + + L L K D + + ++L R + Sbjct: 175 LEPIAQRWQAHLSGGTEALELHYKPGSKLDGEDAEEPWRLAIEEQLRQQRGEEERLGSCR 234 Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 +GPHR ++ + + GS G+Q+ +++G+ LA L++ G P+LLLD++ A Sbjct: 235 VGPHRDEIAL-LLGGSPARQFGSAGQQRSLVLGLKLAELELVTQLCGEPPLLLLDDVLAE 293 Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFM 365 LD ++ L V + Q ++ T F + A+ + Sbjct: 294 LDPTRQQLLLEAVGE-SHQCLVSATHLEGFGGGWQQQAQIL 333 >gi|289523931|ref|ZP_06440785.1| putative DNA replication and repair protein RecF [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502587|gb|EFD23751.1| putative DNA replication and repair protein RecF [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 354 Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 154/367 (41%), Gaps = 18/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++N +R+ + + VG N GKTN LEA+S L +R D+ Sbjct: 1 MWFSQTYWLNYKNLKPVRISWHKGLNVVVGPNASGKTNTLEALSMLCGWGQVQRGKLRDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 SP +++ G E +IS+ + +D R++ L H+ Sbjct: 61 VNWDSPGQARLYSQFNGEE---NISVVVSIQDKRTISVA----GKQCSASTLRLHVPCLS 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 R+ G RR FL+ + I P + RR+ D+ +L+R +N +L G +D + Sbjct: 114 FWSDDVRLIEGSPAIRRNFLNHLCATIVPLYARRLYDYRKLLRHKNYILRAGRYDDAVIK 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + MA + + R +++ L + E ++ ++ + Sbjct: 174 A----MAPVAAWLWSYRRSIVDLLKVGLKEVSSHL----VEFDFEVDIEEGNKDYYEDPL 225 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + K L +K + + +L+GPHR DL + + A S G+++ + V +A A Sbjct: 226 EAFYKSLAFFKKEEIARKVSLVGPHRDDLRITVKGRPAFQAL-SRGQRRKLAVAFMMASA 284 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE-TAK 363 +++ +PI+LLDE++A LD + + L + + + Q+ +T T + + AK Sbjct: 285 KVVEYKLKRSPIILLDEVTAELDREGKEQLIKALFESNWQV-ITATADEQLGYIEDFPAK 343 Query: 364 FMRISNH 370 I Sbjct: 344 VWHICRG 350 >gi|15638998|ref|NP_218444.1| recF protein (recF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025239|ref|YP_001933011.1| recombination protein RecF [Treponema pallidum subsp. pallidum SS14] gi|3322258|gb|AAC65001.1| recF protein (recF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017814|gb|ACD70432.1| recombination protein RecF [Treponema pallidum subsp. pallidum SS14] Length = 403 Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 149/337 (44%), Gaps = 18/337 (5%) Query: 14 EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73 FRN A + + FVG+NG GKTNILE + + G FR + +++ + Sbjct: 56 NFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFRTRTESEL---YATHAR 112 Query: 74 STFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 S RV+ M G ++++ +++ + + ++ N IR EL + + Sbjct: 113 SNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELISSIPCILFFHNDLDF 170 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 G RR FLD+ + +P + + + L + +NR + E +++ Q+A Sbjct: 171 VVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEKRV--QLLDALDTQIAT 228 Query: 193 LGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251 +G + R +++ + + +Y ++ + +++ + EE L Sbjct: 229 VGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIEYKPSWS-------DSSVEEIVHSL 281 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 + RK D ++ GPHR + +A+ I STG++++V + + ++ A + T Sbjct: 282 YKRRKHDLAMGMSMSGPHRDKIHFT-RSQALFIPQASTGQRRLVSLVLRMSQAVFYTGVT 340 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G P+LL+D++ LD +KR + Q+F T Sbjct: 341 GKLPVLLMDDVLLELDPEKRERFMMSLPPYD-QLFCT 376 >gi|291059423|gb|ADD72158.1| DNA replication and repair protein RecF [Treponema pallidum subsp. pallidum str. Chicago] Length = 357 Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 149/337 (44%), Gaps = 18/337 (5%) Query: 14 EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73 FRN A + + FVG+NG GKTNILE + + G FR + +++ + Sbjct: 10 NFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFRTRTESEL---YATHAR 66 Query: 74 STFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 S RV+ M G ++++ +++ + + ++ N IR EL + + Sbjct: 67 SNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELISSIPCILFFHNDLDF 124 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 G RR FLD+ + +P + + + L + +NR + E +++ Q+A Sbjct: 125 VVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEKRV--QLLDALDTQIAT 182 Query: 193 LGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251 +G + R +++ + + +Y ++ + +++ + EE L Sbjct: 183 VGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIEYKPSWS-------DSSVEEIVHSL 235 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 + RK D ++ GPHR + +A+ I STG++++V + + ++ A + T Sbjct: 236 YKRRKHDLAMGMSMSGPHRDKIHFT-RSQALFIPQASTGQRRLVSLVLRMSQAVFYTGVT 294 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G P+LL+D++ LD +KR + Q+F T Sbjct: 295 GKLPVLLMDDVLLELDPEKRERFMMSLPPYD-QLFCT 330 >gi|329894832|ref|ZP_08270632.1| DNA recombination and repair protein RecF [gamma proteobacterium IMCC3088] gi|328922726|gb|EGG30060.1| DNA recombination and repair protein RecF [gamma proteobacterium IMCC3088] Length = 428 Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 91/431 (21%), Positives = 157/431 (36%), Gaps = 73/431 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR---RASYAD 63 + + I+ RN A + + +F+GDNGVGKT++LEAI L GR FR A Sbjct: 2 LTRIQIANLRNIAMQEIGDLSPVNVFLGDNGVGKTSVLEAIHTLGYGRSFRKQGGQKDA- 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADIS---IKLET----RDDRSVRCLQINDVVIRVVDEL 116 + R G V G G + +E R ++IN ++ + E+ Sbjct: 61 LVRYGCERLVVFGESVMGGSGSVRGDGQALGVERMGLSRAANGDIQIKINGEKLQRLSEM 120 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 L + + +G + ERRR+LD VF ++ R + ++ RN +L Sbjct: 121 AFRLPTIAVNSDTFDLLTGGAAERRRYLDWAVFHVEHGFRDVSKRYANALQQRNSILRRI 180 Query: 177 Y--------------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 D S+ ++ LG ++ R L L + +++ Sbjct: 181 ANQMRLANPKNSSIDHDPHELSTWTQAVSALGAQVGEYREAQFLVLRDLFEDMLRELGGG 240 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY----- 277 + + L +S A+ L G+ D T GPHR+D+ V Sbjct: 241 ALGVKLGY-------RSGWGQGVALAEALEQGQISDMSRGFTQFGPHRADIQVVVGKDVA 293 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARL---------------------------ISNT 310 + S G+ K+V++ + LA R ++ Sbjct: 294 GQARLARDVLSRGQLKLVVLAMKLAQVRFFLHAGSAGTLASKGARTEAGRDPQVQALAPA 353 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLN-----ET 361 G +LLD+I+A D + AL R++ ++ G Q+F T T L + Sbjct: 354 AGNTLSVLLDDIAAEFDRPRVVALGRLLAEMIMQGGVQVFATSTAIEPLKPLLDAISIDD 413 Query: 362 AKFMRISNHQA 372 K + + + Sbjct: 414 FKVFHVEHGRI 424 >gi|282856280|ref|ZP_06265561.1| DNA replication and repair protein RecF [Pyramidobacter piscolens W5455] gi|282585857|gb|EFB91144.1| DNA replication and repair protein RecF [Pyramidobacter piscolens W5455] Length = 352 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 84/351 (23%), Positives = 149/351 (42%), Gaps = 17/351 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I FRN + + ++ + G NG GKTNILEA+ ++ F + +D Sbjct: 1 MRIAQTRFRNFRNLENALIAWEPGLNLLTGANGAGKTNILEALHVVTGWGAFSGSKCSDT 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S S A+ G E A I + R L+++ + R D L + Sbjct: 61 VKWQSEGGASLAAQAAG-EREAIIEAVIMARAS-----LRLDGKLCRWGD-LRNCVPSLT 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +PS + G RRRFLD + P + ++ ++ ++ + R LL G+ Sbjct: 114 FLPSDMALIEGAPSVRRRFLDLLCALYFPLYAYKLSEYRKITQHRRHLLGLGHS----TR 169 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 E MA L I R+E+I AL + ++ I L+L G D L Sbjct: 170 VTEETMANLSAWIWECRLEVIAALREHLEKWRGLLPR-KIDLNLKRGGSGNAD----DLL 224 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E++ + + + S L+GPHR DL++ C+ + S G+++ + + + A Sbjct: 225 EDFHRSCAILAERERASGLPLVGPHRDDLVIG-CEGRLASEVLSRGQRRRAALALVMGAA 283 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + +P+LL DE+++ LDE R L + Q+F + ++ Sbjct: 284 SAVERRGRASPVLLFDEVASELDEAGRTVLMECLQHSRWQVFAATAESALP 334 >gi|317968796|ref|ZP_07970186.1| recombination protein F [Synechococcus sp. CB0205] Length = 392 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 170/374 (45%), Gaps = 15/374 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L + +FRNY +L L +A + +G NG GK+N+LEA+ L R R +S D+ Sbjct: 25 RLHRLELRQFRNYGALSLTLEAPRLLVIGRNGEGKSNLLEAVELLGSLRSHRCSSDRDLI 84 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + G +G + ++L + R + N V+ EL LR Sbjct: 85 QQGERQGLIAA----DCDGGDRLELELRRQGGR---QARRNGKVLERQHELIGPLRCVGF 137 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS---W 182 + G RR++LDR+V ++P + + + RL+R R++LL G+ + Sbjct: 138 SALDLELVRGEPALRRQWLDRVVLQLEPVYAELLSRYGRLLRQRSQLLRRGFPQAQLEGL 197 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSF 240 + + QMA +G +++ R+ + L L + + + L L + +++ Sbjct: 198 LDAFDQQMALIGTRLHRRRLRALRRLEPLAQAWQHRLSDGRELLGLRYCPGSQLEGEEAE 257 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 ++ A++L R + + +GPHR ++ ++ + +GS G+Q+ +++ + Sbjct: 258 APWRDALAEQLLLQRPQELRLGQCSVGPHRDEVAMELGGQP-ARRYGSAGQQRTLVLALK 316 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359 LA L+ G P+LLLD++ A LD ++ L V G Q ++ T F+ + Sbjct: 317 LAELELVHQLWGEPPLLLLDDVLAELDPGRQELLLEAVGQ-GHQCLVSATHLGAFNGGWH 375 Query: 360 ETAKFMRISNHQAL 373 + ++ + + L Sbjct: 376 QGSQVVTVEAGMVL 389 >gi|254995385|ref|ZP_05277575.1| recombination protein F [Anaplasma marginale str. Mississippi] Length = 339 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 164/344 (47%), Gaps = 6/344 (1%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 +G+NG GKTNILEAIS LS G G R S A + S + +S V + G A S+ Sbjct: 2 LLGENGSGKTNILEAISLLSKGPGLRNVSAACMQNRESSAPWSVHHAV--LSGNAQCSVS 59 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 + +++ R L I++ + L+ L I WL+P +D I ER RF DR+V Sbjct: 60 ITKHENK--RRLLIDEKAG-LYSTLHNMLCIVWLMPQLDHILLKAPSERLRFFDRVVHIF 116 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 D + ++ +E+ R R ++L E D +W +S+E MA GV I R+ + L Sbjct: 117 DKDYSSHIVRYEKAKRDRRKILREAPQDVNWLTSLENVMAASGVCIARMRLNALEILQKT 176 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 + + F + L + + +S Y ++L + R D + T G H Sbjct: 177 MADNDINSPFLKFNIHLDSAV-FELLESQEHAVSRYMQQLGNSRMKDMHGQLTSFGIHND 235 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 + DK + + STGEQK++L+ + L A API+LLD+I +HLD + Sbjct: 236 HFQISNADKNLAASDCSTGEQKILLLSLLLTAAVAKRKVHNQAPIMLLDDIMSHLDYTHK 295 Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 L + + D+G Q ++T D F+ L +RI+++ + Sbjct: 296 QELVQTIKDVGCQTWITDVDDRNFEGLERHFVRLRITDNSINPV 339 >gi|13959702|sp|O83049|RECF_TREPA RecName: Full=DNA replication and repair protein recF Length = 352 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 149/337 (44%), Gaps = 18/337 (5%) Query: 14 EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73 FRN A + + FVG+NG GKTNILE + + G FR + +++ + Sbjct: 5 NFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFRTRTESEL---YATHAR 61 Query: 74 STFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132 S RV+ M G ++++ +++ + + ++ N IR EL + + Sbjct: 62 SNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELISSIPCILFFHNDLDF 119 Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 G RR FLD+ + +P + + + L + +NR + E +++ Q+A Sbjct: 120 VVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEKRV--QLLDALDTQIAT 177 Query: 193 LGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251 +G + R +++ + + +Y ++ + +++ + EE L Sbjct: 178 VGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIEYKPSWS-------DSSVEEIVHSL 230 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 + RK D ++ GPHR + +A+ I STG++++V + + ++ A + T Sbjct: 231 YKRRKHDLAMGMSMSGPHRDKIHFT-RSQALFIPQASTGQRRLVSLVLRMSQAVFYTGVT 289 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G P+LL+D++ LD +KR + Q+F T Sbjct: 290 GKLPVLLMDDVLLELDPEKRERFMMSLPPYD-QLFCT 325 >gi|257456817|ref|ZP_05622001.1| DNA replication and repair protein RecF [Treponema vincentii ATCC 35580] gi|257445823|gb|EEV20882.1| DNA replication and repair protein RecF [Treponema vincentii ATCC 35580] Length = 358 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 77/367 (20%), Positives = 149/367 (40%), Gaps = 15/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ FRN + + A VG NG GKTN+LEA+ S G FR + A++ Sbjct: 1 MPFLSISPYNFRNLENKAIDLSAPEVFLVGQNGQGKTNLLEALYLASYGNSFRTRNEAEI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + E E +ISI + + ++ N I + + Sbjct: 61 YKKNTNEYSIRVLFKENEERSHNISIISKDKKK----IIEKNLKKIHDRKDFISTIPCIL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +G RR F+D+ + D + + +F +L++ RN +L E S Sbjct: 117 FCHDDLDFATGSPERRRFFIDQSLSLYDSSYIDILRNFTKLLKSRNLVLKEKK--SEILD 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 I+AQ+ +G++I R +I + +++ + + + K A Sbjct: 175 VIDAQLIPIGLQIMERRRALIESFNNIFSSLYENIGGID-SVMIDYSPSWK-----SANF 228 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +E L + R++D ++ GPHR + +K + S G+Q+++ + + A A Sbjct: 229 DEVLISLIEKRQLDFTMNTSMSGPHRDKIRF-VRNKKPFVQTASMGQQRLLSLVLRAAQA 287 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETAK 363 + TT P+LL+D++ LD +KR + Q+ T + + + E + Sbjct: 288 YFYTETTKRLPVLLMDDVLLELDPEKRKNFTEHLPQYD-QLICTFLPGEPYQNYIREKSL 346 Query: 364 FMRISNH 370 +S Sbjct: 347 VYIVSEG 353 >gi|67809989|gb|AAY81983.1| recombinase F [Wolbachia pipientis] Length = 320 Score = 213 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 96/332 (28%), Positives = 155/332 (46%), Gaps = 13/332 (3%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 IK L + FR++++ L D + G NG+GKTNILEAIS L+ G ++A Sbjct: 1 ATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAKA 60 Query: 62 ADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 +++ R + + + GM+ SI + D+ + +QI+ L K Sbjct: 61 SEIQNRFSNEDWVVHYDFFNGMDFN---SIGIAKSFDK--KLIQIDGKTQSSYSSLYKIS 115 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + WL+P MD + +R +FLDR+V + + + + R R++LL E D Sbjct: 116 NVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLDK 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 +W SS+E MA V I R ++ L I + E FP L + L + Sbjct: 176 NWLSSLENIMAVNAVSILRMRSSVLKTLQDTI-DNHSGELFPKASLKFSSQL------TL 228 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 E + +L + R+ DS++ R G H + V + + I STGEQK++L+ I Sbjct: 229 DDTAEYFQNRLKENREKDSLTGRVTFGVHNDNFRVFCQKRNVPINLCSTGEQKLLLLSII 288 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 L+ + AP+LLLD+I +HLD+ R Sbjct: 289 LSSVKARCIHYNKAPLLLLDDIMSHLDKHYRK 320 >gi|329847541|ref|ZP_08262569.1| DNA replication and repair protein recF [Asticcacaulis biprosthecum C19] gi|328842604|gb|EGF92173.1| DNA replication and repair protein recF [Asticcacaulis biprosthecum C19] Length = 290 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 107/297 (36%), Positives = 157/297 (52%), Gaps = 13/297 (4%) Query: 77 ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136 AR+ E ++ + RD R+ R ++I+ + +L HLR+ WL P+ DR+F Sbjct: 3 ARLHTGEDEVQLATGSDPRD-RAKRTVRIDQQAV-PAAQLLDHLRMIWLTPAQDRLFIEA 60 Query: 137 SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 +R +F DR+V+A +P H + +E+ +R R +LLTEG D +W + +E ++A G + Sbjct: 61 RNDRLKFFDRLVYAAEPGHAAIVAAYEKALRERLKLLTEGPADETWLTVLEHKLAANGAR 120 Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + AR + AL + I + FP LSLTG +D L R Sbjct: 121 MTEARQAAMQALQNEID--GHESAFPKADLSLTGTID------TADLTTALMNGFRHSRD 172 Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316 D + R+L GPHR DL V + DK A STGEQK +L+ I LA + + F P+ Sbjct: 173 RDGAAGRSLFGPHRMDLAVVHRDKTRPAADCSTGEQKALLLNIILAQG---ARLSAFKPV 229 Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 LLLDE++AHLD +R+ALF +G Q F TGTD S+FD L A +R+ Q L Sbjct: 230 LLLDEVAAHLDPLRRHALFDETHALGLQTFFTGTDLSLFDGLLGRALGVRVEAAQIL 286 >gi|315170510|gb|EFU14527.1| DNA replication and repair protein RecF [Enterococcus faecalis TX1342] Length = 200 Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 95/205 (46%), Gaps = 9/205 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + +RNY ++ L F +F+G+N GKTN+LE+I L+ R R ++ ++ Sbjct: 1 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A++ G+ ++ LE R ++N + + + L + Sbjct: 61 IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RR+F+D + + P + ++ ++ +++ RN+ L + D+ Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMI 205 + + Q+AE G K+ AR+ + Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFL 200 >gi|269791622|ref|YP_003316526.1| DNA replication and repair protein RecF [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099257|gb|ACZ18244.1| DNA replication and repair protein RecF [Thermanaerovibrio acidaminovorans DSM 6589] Length = 354 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 144/371 (38%), Gaps = 19/371 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + +RN + +F G NG GKTN+LEA S GF R S Sbjct: 1 MHFRSIKLYRYRNLEDQAVNLSPGLNLFFGPNGAGKTNLLEAFCAASGWGGFGRPSMIP- 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G S A V G +I+ + L+I+ + EL + + + Sbjct: 60 -RRGDGSPSPMSAAVAQASGEEEITCAFQFNRRP---LLKIDGSAV-TGSELRRRMPVLA 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + G RRR LD + P + + + R +R R L G ++ Sbjct: 115 FLPDSAALVDGPPSMRRRLLDMVCVLCVPGYGEALTRYRRAVRQRMASLRCGRWEEMTLR 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 MA V+I AR + L L + + H++ S G + Sbjct: 175 V----MAREAVEIWRARSVVAPRLCQLSQAFASRLGI-HLEASYVGQHESLDRLEPG--- 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + + + + RR GPHR D+++ A +A S G+++ + +A A Sbjct: 227 -RFLEAARSIKGEEMTHRRPRFGPHRDDVVLTSGGHAAGLAL-SRGQRRRAFAALVMASA 284 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 +++ P+L++DE+ A +D + R + R + ++G Q+ + D + A Sbjct: 285 QVVYKALRRGPVLVMDEVFAEVDREGRTLMARGLVELGVQVLASTAD---LPEAPDGASL 341 Query: 365 MRISNHQALCI 375 R+ + + Sbjct: 342 YRVRSGVVTPV 352 >gi|255020211|ref|ZP_05292280.1| DNA recombination and repair protein RecF [Acidithiobacillus caldus ATCC 51756] gi|254970353|gb|EET27846.1| DNA recombination and repair protein RecF [Acidithiobacillus caldus ATCC 51756] Length = 357 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 76/367 (20%), Positives = 146/367 (39%), Gaps = 17/367 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I R ++L + VG NG GK+ +LEA+ L G+ +RR + Sbjct: 1 MPVAVLEIRNLRCIEHMQLAAGPRWNWLVGANGAGKSTVLEALHLLGLGQSWRRG-PRQL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS F + R E + I ++ + R ++ +R L + L I Sbjct: 60 IRDGSSCFLLSVLRNEDLGLNDRIVLE----QNGGERQMRFAGEHLRSQWALLELLPIQA 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + +G + +RRR LD ++ + + + RL+ RN L Sbjct: 116 IHSGNSEFIAGSADDRRRQLDWGIYRRHREYGDHLRQYRRLLAQRNAWLRSQGHKE---D 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 E +A G ++ R I L + + ++ ++ L + Sbjct: 173 PWEHLLAGAGELLHEYRSREIAYLQEGLCHFWKERTGSTSEIRLHLQSGWRDGM------ 226 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 +A+ L + R D+ + T GPHR++++ ++ + S G+ + + LA Sbjct: 227 -RFAEVLREDRSSDAETGFTRSGPHRANILFRVDGRSAADSL-SRGQLRTLGNCFRLAQL 284 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + I ++ P++L+D+ +A LD R + + +G Q+F GT+ + E + Sbjct: 285 QAIKDSGLELPVVLIDDFAAELDPAGRLWWRQQLDALGVQVFAAGTEAAALPMNAEDCQ- 343 Query: 365 MRISNHQ 371 I Q Sbjct: 344 WTIQAGQ 350 >gi|213646832|ref|ZP_03376885.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 258 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 108/266 (40%), Gaps = 11/266 (4%) Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 + EL + + + P + +G RR FLD F + + +RL++ Sbjct: 1 TDGHKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLK 60 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 RN L + + ++ L +I+ R E +A++ + + Q + P L+ Sbjct: 61 QRNAALRQ-VSRYEQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLT 118 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 + + + +YA L + D M T GPH++D + D A Sbjct: 119 FSFQRGWEKET-------DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTL 170 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S G+ K+++ + LA ++ +G + L+D+ ++ LD+ +R L + SQ+F+ Sbjct: 171 SRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFV 230 Query: 348 TGTDKSV-FDSLNETAKFMRISNHQA 372 + D +E +K + + Sbjct: 231 SAISAEHVIDMSDENSKMFTVEKGKI 256 >gi|326571822|gb|EGE21828.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC7] Length = 402 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 87/405 (21%), Positives = 159/405 (39%), Gaps = 51/405 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I E RN + L A + VG NG GKT++LEA+ LS G+ FR R Sbjct: 2 IKQLQIHELRNLKQVNLTLAA-CNLIVGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRIS 123 S + +AR + E ++ ++ + D + + L+ N+ + L+ HL Sbjct: 61 HHQ-SACTVWARTKFEE---SCTLAIQKKLDETGKSDSILRFNEHTVSTQSALSFHLPTL 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181 + P + S RR+ LD + F I P+ + + ++RL++ RN LL + Sbjct: 117 LIDPVSMSLLDEGSTSRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLP 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + + Q+ ++ R+ + + + E + K+ P SL+ FD + Sbjct: 177 ELFAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQYLAGFDYTKP 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--------ITIAHGSTGEQK 293 ++ L D T IG HR+D+ V + S GE+K Sbjct: 236 -----LSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSRGEKK 290 Query: 294 VVLVGIFLAHARLISNTTGF-------APILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 +++ + L+ +L+ + P++L+D++ A LDED L + V + Q Sbjct: 291 LLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLPCQAI 350 Query: 347 MTGTDKSVFDSLNE--------------------TAKFMRISNHQ 371 +T + + + K + + Sbjct: 351 ITSLNVQTHQKILALKSDGFMATSAPNQRTAEDLSYKMFHVEQGK 395 >gi|326562314|gb|EGE12640.1| DNA replication and repair protein RecF [Moraxella catarrhalis 103P14B1] gi|326575518|gb|EGE25443.1| DNA replication and repair protein RecF [Moraxella catarrhalis 101P30B1] Length = 402 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 87/405 (21%), Positives = 160/405 (39%), Gaps = 51/405 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I E RN + L A + VG NG GKT++LEA+ LS G+ FR R Sbjct: 2 IKQLQIHELRNLKQVNLTLAA-CNLIVGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRIS 123 S + +AR + E ++ ++ + D + + L+ N+ + L+ HL Sbjct: 61 HHQ-SACTVWARTKFEE---SCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTL 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181 + P + S+ RR+ LD + F I P+ + + ++RL++ RN LL + Sbjct: 117 LIDPVSMSLLDEGSISRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLP 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + + Q+ ++ R+ + + + E + K+ P SL+ FD + Sbjct: 177 ELFAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQYLAGFDYTKP 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--------ITIAHGSTGEQK 293 ++ L D T IG HR+D+ V + S GE+K Sbjct: 236 -----LSQTLKMRFNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSRGEKK 290 Query: 294 VVLVGIFLAHARLISNTTGF-------APILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 +++ + L+ +L+ + P++L+D++ A LDED L + V + Q Sbjct: 291 LLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLPCQAI 350 Query: 347 MTGTDKSVFDSLNE--------------------TAKFMRISNHQ 371 +T + + + K + + Sbjct: 351 ITSLNVQTHQKILALKSDGFMATSAPNQRTAEDLSYKMFHVEQGK 395 >gi|326560703|gb|EGE11071.1| DNA replication and repair protein RecF [Moraxella catarrhalis 46P47B1] Length = 402 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 87/405 (21%), Positives = 159/405 (39%), Gaps = 51/405 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I E RN + L A + VG NG GKT++LEA+ LS G+ FR R Sbjct: 2 IKQLQIHELRNLKQVNLTLAA-CNLIVGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRIS 123 S + +AR + E ++ ++ + D + + L+ N+ + L+ HL Sbjct: 61 HHQ-SACTVWARTKFEE---SCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTL 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181 + P + S RR+ LD + F I P+ + + ++RL++ RN LL + Sbjct: 117 LIDPVSMSLLDEGSTSRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLP 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + + Q+ ++ R+ + + + E + K+ P SL+ FD + Sbjct: 177 ELFAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQYLAGFDYTKP 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--------ITIAHGSTGEQK 293 ++ L D T IG HR+D+ V + S GE+K Sbjct: 236 -----LSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSRGEKK 290 Query: 294 VVLVGIFLAHARLISNTTGF-------APILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 +++ + L+ +L+ + P++L+D++ A LDED L + V + Q Sbjct: 291 LLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLPCQAI 350 Query: 347 MTGTDKSVFDSLNE--------------------TAKFMRISNHQ 371 +T + + + K + + Sbjct: 351 ITSLNVQTHQKILALKSDGFMATSAPNQRTAEDLSYKMFHVEQGK 395 >gi|88608256|ref|YP_506094.1| putative DNA replication and repair protein RecF [Neorickettsia sennetsu str. Miyayama] gi|88600425|gb|ABD45893.1| putative DNA replication and repair protein RecF [Neorickettsia sennetsu str. Miyayama] Length = 349 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 105/358 (29%), Positives = 158/358 (44%), Gaps = 18/358 (5%) Query: 5 IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 ++ I + + +FRN+A F +H + G NG GKT+ILEAIS LSPG G R AS Sbjct: 1 MRPYITGVLVKDFRNHAFWTGSFKCRHVLLCGKNGAGKTSILEAISKLSPGLGLRSASNI 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ R GS S + + G L ++ + R ++N I+ ++ +++ Sbjct: 61 EMVRSGSLS-WEVSLKFAGSTDLREVGMGYY----EDKRVTKLNGKSIQCFKKVIDLVKV 115 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P M +F+ RR+F DRMV +P+H ++ +ER R ++L G W Sbjct: 116 MWLTPQMSNLFTTDKSVRRKFFDRMVALSEPQHLENLVMYERFKSERLKILNAG-ASKMW 174 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E ++AEL + I ARV I L S P IKL Sbjct: 175 LDVNEKKLAELCIAITDARVSFIGQLMSNFPSK--GFGSPEIKL-FCPVASAIGRVGSSQ 231 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + L R +D+++ + G HR+D + T STGEQK++++GI LA Sbjct: 232 QMQCIQSALERSRAIDTVTGKMQFGVHRTDFLATVRQGDNTARCYSTGEQKLLILGIILA 291 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 I+LLD+I AHLD +A T Q F + D S F Sbjct: 292 AGE-------LIDIILLDDIFAHLDLHNSSAFLLEATKKNCQFFFSDLDNSKFAQFAN 342 >gi|326561745|gb|EGE12080.1| DNA replication and repair protein RecF [Moraxella catarrhalis 7169] gi|326563090|gb|EGE13363.1| DNA replication and repair protein RecF [Moraxella catarrhalis 12P80B1] gi|326569034|gb|EGE19103.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC1] gi|326571723|gb|EGE21736.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC8] gi|326574363|gb|EGE24306.1| DNA replication and repair protein RecF [Moraxella catarrhalis CO72] gi|326578063|gb|EGE27923.1| DNA replication and repair protein RecF [Moraxella catarrhalis O35E] Length = 402 Score = 208 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 87/405 (21%), Positives = 160/405 (39%), Gaps = 51/405 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I E RN + L A + VG NG GKT++LEA+ LS G+ FR R Sbjct: 2 IKQLQIHELRNLKQVNLTLAA-CNLIVGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRIS 123 S + +AR + E ++ ++ + D + + L+ N+ + L+ HL Sbjct: 61 HHQ-SACTVWARTKFEE---SCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTL 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181 + P + S+ RR+ LD + F I P+ + + ++RL++ RN LL + Sbjct: 117 LIDPVSMSLLDEGSISRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLP 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + + Q+ ++ R+ + + + E + K+ P SL+ FD + Sbjct: 177 ELFAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQYLAGFDYTKP 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--------ITIAHGSTGEQK 293 ++ L D T IG HR+D+ V + S GE+K Sbjct: 236 -----LSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSRGEKK 290 Query: 294 VVLVGIFLAHARLISNTTGF-------APILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 +++ + L+ +L+ + P++L+D++ A LDED L + V + Q Sbjct: 291 LLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLPCQAI 350 Query: 347 MTGTDKSVFDSLNE--------------------TAKFMRISNHQ 371 +T + + + K + + Sbjct: 351 ITSLNVQTHQKILALKSDGFMATSAPNQRTAEDLSYKMFHVEQGK 395 >gi|296112233|ref|YP_003626171.1| DNA replication and repair protein RecF [Moraxella catarrhalis RH4] gi|295919927|gb|ADG60278.1| DNA replication and repair protein RecF [Moraxella catarrhalis RH4] Length = 402 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 87/405 (21%), Positives = 159/405 (39%), Gaps = 51/405 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I E RN + L A + VG NG GKT++LEA+ LS G+ FR R Sbjct: 2 IKQLQIHELRNLKQVNLTLAA-CNLIVGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRIS 123 S + +AR + E ++ ++ + D + + L+ N+ + L+ HL Sbjct: 61 HHQ-SACTVWARTKFEE---SCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTL 116 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181 + P + S RR+ LD + F I P+ + + ++RL++ RN LL + Sbjct: 117 LIDPVSMSLLDEGSTSRRQILDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLP 176 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 + + Q+ ++ R+ + + + E + K+ P SL+ FD + Sbjct: 177 ELFAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQYLAGFDYTKP 235 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--------ITIAHGSTGEQK 293 ++ L D T IG HR+D+ V + S GE+K Sbjct: 236 -----LSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSRGEKK 290 Query: 294 VVLVGIFLAHARLISNTTGF-------APILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 +++ + L+ +L+ + P++L+D++ A LDED L + V + Q Sbjct: 291 LLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLPCQAI 350 Query: 347 MTGTDKSVFDSLNE--------------------TAKFMRISNHQ 371 +T + + + K + + Sbjct: 351 ITSLNVQTHQKILALKSDGFMATSAPNQRTAEDLSYKMFHVEQGK 395 >gi|78185501|ref|YP_377936.1| recombination protein F [Synechococcus sp. CC9902] gi|78169795|gb|ABB26892.1| DNA replication and repair protein RecF [Synechococcus sp. CC9902] Length = 353 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 78/350 (22%), Positives = 149/350 (42%), Gaps = 16/350 (4%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 + + +G NG+GK+N+LEA+ L R R + D+ + SP +G Sbjct: 1 MELTESRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWDSPMALLRADVGDGD 60 Query: 83 EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142 ++LE R + + V+ R +D L LR + G RR+ Sbjct: 61 R------LELELRRRGGRQARRNGKVLDRQLD-LIGPLRCIGFSALDLDLVRGEPALRRQ 113 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS----WCSSIEAQMAELGVKIN 198 +LDR+V ++P + + + RL+R R++L +++ + + QMA + +I+ Sbjct: 114 WLDRVVLQLEPVYADLISRYNRLLRQRSQLWRSHRLNTAERSGLLDAFDVQMALISTRIH 173 Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRK 256 R + L + + + L L + D ++ + ++L D R+ Sbjct: 174 RRRRRALQRLEPIAQHWQSHLSSGKELLQLHYQPGSRLDGEEAEEPWRLAIEEQLRDQRE 233 Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316 + IGPHR ++ + + GS G+Q+ +++G+ LA L+ G P+ Sbjct: 234 DEERLGNCRIGPHRDEINMVLGETP-ARRFGSAGQQRSLVLGLKLAELELVKELCGEPPL 292 Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFM 365 LLLD++ A LD ++ L V + Q ++ T F + A+ + Sbjct: 293 LLLDDVLAELDPIRQQLLLEAVGN-DHQCLISATHLDGFHGGWRQEAQIL 341 >gi|309805927|ref|ZP_07699959.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 03V1-b] gi|308167703|gb|EFO69850.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 03V1-b] Length = 246 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 100/249 (40%), Gaps = 9/249 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ Sbjct: 1 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A + G +I L+ + IN + + + + Sbjct: 61 IKFN-----MKIAGIHGTLCKRNIRFDLKLLISNKGKKAWINRLEQKKLSNYLGTMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + + + Q+A L ++ RV ++ L + + L + Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQKEILDIEYKASFPEFDEK 235 Query: 241 CALKEEYAK 249 ++++ Y K Sbjct: 236 DSVEKIYKK 244 >gi|262277740|ref|ZP_06055533.1| putative DNA replication and repair protein RecF [alpha proteobacterium HIMB114] gi|262224843|gb|EEY75302.1| putative DNA replication and repair protein RecF [alpha proteobacterium HIMB114] Length = 363 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 169/366 (46%), Gaps = 10/366 (2%) Query: 7 IKFLNISEFRNYASLRLVFDA--QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +NI F+++ L QH I GDNGVGKTN++E++SF S +G R + + Sbjct: 4 VTKINIKNFKSHKQYNLEISKDYQHIIIYGDNGVGKTNLIESLSFFSNSKGLRGDTLDKL 63 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + + A++ + S K+ + + + + I + ++ + L Sbjct: 64 LPEQETNIIDTNIQAKILSNSNQFNFSFKITKDQENLKKTFFLEEKKI-SLPKIKEILSF 122 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 WL P MD+I +R F+D+++ + + +++ + R ++L D W Sbjct: 123 IWLSPYMDKIMYEGQSIKRDFIDKLISQNEKNFNLSVSSYKKNIAERLQILKN-TKDEKW 181 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 IE ++AE +I + R N ++ +I + ++ NF I + L ++ Sbjct: 182 LDIIEKRLAENIYEIFLMRRNYANKINKIISDKLK--NFREINIKYNNDLFEDLNEKKIK 239 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 + E + +KL R++D +++RT G ++ + K STGEQK L+ I LA Sbjct: 240 I-EIFFEKLKSNRELDEITKRTNFGINKDQIFFFDKIKNRNTDACSTGEQKSSLLTIILA 298 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362 + + ILLLDE ++H+D+ L + G+QI+ TGT K++F ++ Sbjct: 299 NCWKLKIEKKD-FILLLDEATSHIDDQNFGRLVTEIEKFGTQIWYTGTSKNLFQAIENKG 357 Query: 363 KFMRIS 368 F+ + Sbjct: 358 FFIHLE 363 >gi|218295958|ref|ZP_03496738.1| DNA replication and repair protein RecF [Thermus aquaticus Y51MC23] gi|218243696|gb|EED10224.1| DNA replication and repair protein RecF [Thermus aquaticus Y51MC23] Length = 343 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 132/324 (40%), Gaps = 23/324 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ FRN A VG N GKT +L AI L+ G R + D+ Sbjct: 1 MRLLAFRQRHFRNLAFSLFRPPPGLLALVGGNAQGKTGLLLAIH-LALGGEVRG-TLEDL 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + A VE G+ ++E R R +++N+ + + L + Sbjct: 59 IRFGEKEAW-LQAEVETELGV----FRVEQRIGLEGREIRLNERPV-GLRALYELPGSVL 112 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 ++P + G ERR FLD ++ R+ + +E+ +R RN LL G S Sbjct: 113 ILPEDVEVVLGPKEERRGFLDHLLARFSRRYAALLSAYEKALRQRNALLKTGGNS---LS 169 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++A G +I + R + L Q + L L Sbjct: 170 VWDQELARYGEEITLLRRRFLKRFLPLFQSVHQTLAPGEVGLRLE-----------ETAP 218 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 E + L R+ + + +TL+GPHR DL+ + S GE K + + + LA Sbjct: 219 EGLLQALAARREEERLRGQTLVGPHRDDLVFLLGGRP-AHRFASRGEAKALALALRLAEH 277 Query: 305 RLISNTTGFAPILLLDEISAHLDE 328 RL+S G P+LL+DE S LDE Sbjct: 278 RLLSEHHGEPPLLLVDEWSEELDE 301 >gi|93004836|ref|YP_579273.1| DNA replication and repair protein RecF [Psychrobacter cryohalolentis K5] gi|92392514|gb|ABE73789.1| DNA replication and repair protein RecF [Psychrobacter cryohalolentis K5] Length = 402 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 81/412 (19%), Positives = 152/412 (36%), Gaps = 59/412 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L IS RN + L A + +G NG GKT++LEAI LS G+ FR + Sbjct: 2 IERLQISHLRNLTHINLSPAA-CNVIIGANGSGKTSLLEAIFLLSRGKSFRHHQPKRYIQ 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 S + A + ++ ++ + D + L++N + L + L + Sbjct: 61 HYQESA-TIHANLNDSR-----TLAIQKKAD-ATTILRLNQTTVYNQSILTEQLPTLLID 113 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182 PS + S RR+ LD +VF + + + ++RL++ RN LL + + Sbjct: 114 PSTMDMLEQGSASRRQLLDWLVFHMKQGFHSQWVAYQRLLKQRNSLLKQRRHLTQVQLAE 173 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + ++ I+ R + A + + + P L+ + +D Sbjct: 174 LKAWDKGLSSHAALIHHYRQAIFEAWQPYFSKSIAQL-LPAYAEQLSLSYNAGYDTGIAL 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD----------------------- 279 + L + + D T IG HR+D+ V + Sbjct: 233 DIQ-----LNERLEQDLQLGYTRIGNHRADIHVHWRSIGSRQIADENLNSPLSADSTVKL 287 Query: 280 ---KAITIAHGSTGEQKVVLVGIFL------------AHARLISNTTGFAPILLLDEISA 324 K S GE+K+++ + L + P++LLD+I+A Sbjct: 288 PILKEQAANILSRGEKKLLITALRLSQLPLLLNAKTNSELYNSDAKLSATPVVLLDDITA 347 Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN---ETAKFMRISNHQAL 373 LD L + + Q+F+T S+ ++ E ++ + L Sbjct: 348 ELDNKAIEILLSTLAQLPCQVFVTSLTDSILPLVHEYWEKSQVFHMKQGGIL 399 >gi|261416459|ref|YP_003250142.1| DNA replication and repair protein RecF [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372915|gb|ACX75660.1| DNA replication and repair protein RecF [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327022|gb|ADL26223.1| putative DNA replication and repair protein recF [Fibrobacter succinogenes subsp. succinogenes S85] Length = 419 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 76/407 (18%), Positives = 144/407 (35%), Gaps = 71/407 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + IS+ R+ S+ F+ + G NG GKT ILE+I L+ G FR ++ Sbjct: 2 ISKVFISKMRSLESMDCNFEPGINVICGPNGCGKTTILESIYLLAQGFSFRSHELRELIT 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 ++++ +R ++ N ++ + Sbjct: 62 WKQNELI-LRGEFYDEGRERMRALRVFSRGSE----VRENGETLKSPAAFFGTCPAVIMQ 116 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GYFDS 180 PS + G RRR+LD ++ + + ++ R+++ RN+ L E Sbjct: 117 PSDIELLRGGPDVRRRWLDEILCFRSSANSLALRNYRRVLQQRNKWLKEFKQKGFAVGGE 176 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFD- 237 + Q+ +LG K+ AR+ + +S +I Y +K + I + + D Sbjct: 177 DLFRVLTLQLIDLGAKVWAARLALSKEVSEIITRYYRKLSGGVDEITCAYKSSILKTLDA 236 Query: 238 -QSFCALKEEYA----------------------------------------------KK 250 + L +E + Sbjct: 237 LDAADPLSDEMMDEIPSGATGAAEGVVEIARGECAECSADGSGNVAGSAADGSDVVSEEM 296 Query: 251 LFDGRKM--------DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L + + + T+ GPHR DL + + + GS G+ + V + A Sbjct: 297 LRNAFARKLADLEFVERLQGMTMAGPHRDDLALCASGYEMR-SVGSQGQCRSAAVAMRFA 355 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + S PILLLD+I A LD ++R+A+ ++ + Q+ + Sbjct: 356 AVDVASRYL-TKPILLLDDIFAELDVNRRDAVASLIREKECQVVIAT 401 >gi|309804875|ref|ZP_07698937.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 09V1-c] gi|308165814|gb|EFO68035.1| DNA replication and repair protein RecF [Lactobacillus iners LactinV 09V1-c] Length = 241 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 94/230 (40%), Gaps = 9/230 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FRN+ +++ FD+ IF+G N GKTN+LEAI FL+ + R + ++ Sbjct: 1 MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A + G +I L+ + IN + + + + Sbjct: 61 IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180 P + G RRRF+D I+ + + + ++++ RN L + D Sbjct: 116 FSPEDLSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 + + + Q+A L ++ RV ++ L + + L + Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEY 225 >gi|115378326|ref|ZP_01465492.1| RecF protein [Stigmatella aurantiaca DW4/3-1] gi|115364680|gb|EAU63749.1| RecF protein [Stigmatella aurantiaca DW4/3-1] Length = 397 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 119/283 (42%), Gaps = 9/283 (3%) Query: 97 DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 VR ++ ++E + + P + G RR FLDR VF P Sbjct: 4 GGGVRQAFVDGKKASSLEEYFGGVAVVAFTPDDLEVVKGGPEARRTFLDRAVFNRFPAFL 63 Query: 157 RRMIDFERLMRGRNRLLTEGYF-DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215 + D+ R ++ RNRLL +G ++++ + + +A G ++ + R ++ L+ Sbjct: 64 KESRDYARALKNRNRLLRDGPAAEAAYLDAYDETLARAGARVYVRRRALMAELAPRAQAT 123 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-----GRKMDSMSRRTLIGPHR 270 + + G+ Q F + E R+ D T +GPH Sbjct: 124 FASIGR-TVDPAAYGYHPAHLAQEFAEVDEVRLADALLEALAGRRRRDLERGFTSVGPHV 182 Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 D+ V ++ + S G+Q+ +++G +A + GF P+LLLD++S+ LD ++ Sbjct: 183 DDVAVTLGGRSARA-YASQGQQRALVLGWKIAEIENLHAALGFLPLLLLDDVSSELDPER 241 Query: 331 RNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNHQA 372 L + G+Q+F+T TD S+ + +M + Q Sbjct: 242 NAYLMGYLAASGAQVFLTTTDASLVRAAAAHDTLWMDVHAGQV 284 >gi|87124943|ref|ZP_01080790.1| RecF protein [Synechococcus sp. RS9917] gi|86167263|gb|EAQ68523.1| RecF protein [Synechococcus sp. RS9917] Length = 344 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 75/331 (22%), Positives = 137/331 (41%), Gaps = 15/331 (4%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 +G NGVGK+N+LEA+ L R R + D+ E + ++ Sbjct: 1 MIGRNGVGKSNLLEAVELLGSLRSHRASQDQDLIHWDQSRAVLRAMAAEQDQ------LE 54 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 LE R + R + N V+ +L LR ++ G RR++LDR+V + Sbjct: 55 LELR-RKGGRQARRNGRVLERQLDLIGPLRCVGFSALDLQLVRGEPALRRQWLDRVVLQL 113 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEG----YFDSSWCSSIEAQMAELGVKINIARVEMINA 207 +P + + + RL+R R +L + QMA + +I+ R + Sbjct: 114 EPVYGDLISRYGRLLRQRAQLWRRQSTATPEREQLLEVFDQQMALVSTRIHRRRRRALAR 173 Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTL 265 L L + + + H L L + + ++ ++ A +L R ++ Sbjct: 174 LQPLAAAWQHQLSDGHEALELRYEAGSRLEGEEAEEPWRQAIAAQLLAQRAEEARLGSCR 233 Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 +GP R ++ + D S G+Q+ +++ + LA +L+ G P+LLLD++ A Sbjct: 234 VGPQRDEIALML-DGIAARRFASAGQQRTLVLALKLAELQLVQELWGEPPLLLLDDVLAE 292 Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 LD ++ AL V Q ++ T F+ Sbjct: 293 LDPHRQLALLEAVGGT-HQCLISATHLDAFE 322 >gi|318042584|ref|ZP_07974540.1| recombination protein F [Synechococcus sp. CB0101] Length = 344 Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats. Identities = 81/346 (23%), Positives = 157/346 (45%), Gaps = 15/346 (4%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90 + +G NG GK+N+LEA+ L R R +S D+ R G A EG + + + Sbjct: 2 LVIGRNGEGKSNLLEAVELLGSLRSHRCSSDRDLIRQGERQAL-ISASCEGGDL---LEL 57 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150 +L + R R N V+ EL LR + G RR++LDR+V Sbjct: 58 ELRLQGGRQARR---NGKVLERQHELIGPLRCVGFSALDLELVRGEPALRRQWLDRVVLQ 114 Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEG---YFDSSWCSSIEAQMAELGVKINIARVEMINA 207 ++P + + + RL+R R++LL G + + QMA +G +++ R+ + Sbjct: 115 LEPVYAELLSRYGRLLRQRSQLLRRGLGAGMQPELLEAFDQQMALIGTRLHRRRLRALRR 174 Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 L L + ++ + +L L + +++ ++ ++L R + + Sbjct: 175 LQPLAAAWQERLSGGREQLQLRYRPGSQLEGEEAEGPWRDALLEQLRQQRPEELRLGQCS 234 Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 +GPHR ++ ++ D+ +GS G+Q+ +++ + LA L+ G P+LLLD++ A Sbjct: 235 VGPHRDEVALELGDQP-ARRYGSAGQQRTLVLALKLAELELVHQLWGEPPLLLLDDVLAE 293 Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNH 370 LD ++ L V + G Q ++ T F ++ ++ + + Sbjct: 294 LDPGRQQLLLEAVGE-GHQCLVSATHLGAFSGGWHQRSQVVTVEAG 338 >gi|167470927|ref|ZP_02335631.1| recombination protein F [Yersinia pestis FV-1] Length = 221 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 6/225 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN S L A VG NG GKT++LEA+ L GR FR V Sbjct: 1 MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F RV+ E A + + + D VR I+ V EL + L + Sbjct: 61 IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + +G RR FLD F +P + +RL++ RN L + + Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 175 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 + + ++ L +I+ R +A+++ I P LS + Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFS 219 >gi|289642468|ref|ZP_06474613.1| DNA replication and repair protein RecF [Frankia symbiont of Datisca glomerata] gi|289507727|gb|EFD28681.1| DNA replication and repair protein RecF [Frankia symbiont of Datisca glomerata] Length = 469 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 12/214 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++ +FR+Y +L L+ FVG NG GKTN+LEA+ +L+ R AS A + Sbjct: 1 MRLTHLSLVDFRSYPALDLLLAPGVNTFVGSNGQGKTNLLEAVGYLATLGSHRVASDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ S + AR+ + A +++E R+ R ++N + ++ L + + Sbjct: 61 VREGATSA-AVRARIARGDRAA--LVEIEIIPGRANRA-RLNRAPLARSHDVLGLLVMVF 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176 P + G RRRFLD ++ A PR + D+++++R R+ LL Sbjct: 117 FAPEDLALVKGDPAGRRRFLDDLLVARTPRLAGVLADYDKVLRQRSTLLRTAGAARRSGR 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210 D ++ + G ++ AR+ ++ L Sbjct: 177 AGDLRTLDVWDSHLVRHGCELLAARLALVEQLRP 210 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 6/122 (4%) Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314 R+ + TL+GPHR +L++ + + S GE + + + LA L+ + Sbjct: 352 RQQEIERGATLVGPHRDELLLSISGRP-ARGYASHGESWSLALALKLASFELLQD-DQRE 409 Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQAL 373 P+LLLD++ A LD +R+ L ++ Q+ +T + V +L +++ + Sbjct: 410 PVLLLDDVFAELDTHRRDRLAELIRSAE-QVLVTAAVEADVPAAL--AGARFTVADGKVS 466 Query: 374 CI 375 + Sbjct: 467 RV 468 >gi|71064584|ref|YP_263311.1| DNA replication and repair protein RecF [Psychrobacter arcticus 273-4] gi|71037569|gb|AAZ17877.1| DNA replication and repair protein RecF [Psychrobacter arcticus 273-4] Length = 404 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 86/414 (20%), Positives = 154/414 (37%), Gaps = 61/414 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ L IS RN + L A + +G NG GKT++LE + LS G+ FR + Sbjct: 2 IERLQISYLRNLTPINLAPAA-CNVIIGANGSGKTSLLEGMFLLSRGKSFRHNQPKRYIQ 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + + A++ ++ ++ + D + L++N + L + L + Sbjct: 61 HHKDAA-TVHAKLSDGR-----TLAIQKQAD-ATTILRLNQTTVYNQSILTEQLPTLLID 113 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182 PS + S RR+ LD +VF + + I ++RL++ RN LL + + Sbjct: 114 PSTMDMLEQGSASRRQLLDWLVFHMKQGFHPQWIAYQRLLKQRNSLLKQRRHLTHVQLAE 173 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + +A I+ R + A E + + P L+ + +D S Sbjct: 174 LRAWDKGLASHAALIHHYREAIFEAWQPYFSESIAQL-LPAYAEQLSLSYNAGYDTSVAL 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD----------------------- 279 + L + D T IG HR+D+ V + Sbjct: 233 DIQ-----LNERLDQDLQLGYTRIGNHRADIHVHWRSIRPIHKANEHLNSPLAAAADSTF 287 Query: 280 -----KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF------------APILLLDEI 322 K S GE+K+++ + L+ L+ NT P++LLD+I Sbjct: 288 KLPILKEQAANILSRGEKKLLITALRLSQLPLLLNTGNDLEASVNDAKLSATPVVLLDDI 347 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD---SLNETAKFMRISNHQAL 373 +A LD+ L + + Q+FMT S+ E + + L Sbjct: 348 TAELDDRAIEILLSTLAQLPCQVFMTSLTDSILPLVYEYWEKPQVFHMKQGSIL 401 >gi|288939767|ref|YP_003442007.1| DNA replication and repair protein RecF [Allochromatium vinosum DSM 180] gi|288895139|gb|ADC60975.1| DNA replication and repair protein RecF [Allochromatium vinosum DSM 180] Length = 358 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 144/376 (38%), Gaps = 27/376 (7%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M ++ L I RN L L D + + G NG GKT++LEAI L+ GR FR Sbjct: 1 MDPEPGLRSLRIESLRNIRRLDLAPDTRTLLLTGANGAGKTSVLEAIYLLARGRTFRGTK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELN 117 +T G + RVEG +D + ++ +VR + + Sbjct: 61 AGPLTTQGE-----FYTRVEGRYQPSDRDVVRLRYVKEGATAVRDIHPPLWAETGGADWR 115 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 L++ + + + G RRRFLD VF ++ R + DF R++ RN + G Sbjct: 116 SPLQVKLVGENAQILLDGDPSLRRRFLDWNVFHVEHRFAQVQKDFTRVLMQRNAAIRSGG 175 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 S + + L ++ R + ++ F H D ++ Sbjct: 176 ---SQLGLWDRRFIALAESVDRQRAAFHAEWRTCFLDLCGDYPFLH-------GTDLRYR 225 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + + +E + L + TL GP R+D +D + S G+ K+V+ Sbjct: 226 RGWPDGRE-LGETLVALADQELARGYTLAGPSRADFRIDPGEGRRGF---SRGQTKIVVA 281 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT----DKS 353 + LA R+ I LLD++ A LD L+ G+Q+ T D Sbjct: 282 LLQLAAERVHRAHGREPVIWLLDDLEAELDRTLAERLWSAFGATGNQVIATRVATDGDPG 341 Query: 354 VFDSLNETAKFMRISN 369 +F + E+ + + Sbjct: 342 IFGN-TESLTMFHVEH 356 >gi|148238788|ref|YP_001224175.1| DNA replication and repair protein RecF [Synechococcus sp. WH 7803] gi|147847327|emb|CAK22878.1| DNA replication and repair protein RecF [Synechococcus sp. WH 7803] Length = 365 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 83/359 (23%), Positives = 160/359 (44%), Gaps = 17/359 (4%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 FRN+ L+L +A + +G NG+GK+N+LE++ L R R + AD+ + Sbjct: 4 FRNHCHLQLEIEAPRLLVIGSNGIGKSNLLESVELLGSLRSHRSSQDADLIHWDASRALL 63 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 + V+ D ++LE R + + V+ R +D L LR + Sbjct: 64 RASCVD------DTEVELELRRRGGRQARRNGKVLQRQMD-LIGPLRCVGFSALDLHLVR 116 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-----YFDSSWCSSIEAQ 189 G RR +LDR+V ++P + + + RL+R R++ G + S + Q Sbjct: 117 GEPALRRHWLDRVVLQLEPVYAELIGRYNRLLRQRSQFWRRGGGGTSVEHQALLDSFDIQ 176 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCALKEEY 247 MA + +I+ R ++ L L + + + H +L L + +++ + Sbjct: 177 MALVCTRIHRRRRRALSRLEPLAAAWQSRLSKGHEQLELRYSPGSVLEGEEAEEPWRLAI 236 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 ++L R + +GPHR ++ + + + GS+G+Q+ +++ + LA L+ Sbjct: 237 EQQLHRQRSEEERLGSCRVGPHRDEIDM-LLNGTVARRFGSSGQQRTLVLALKLAELELV 295 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFM 365 G P+LLLD++ A LD ++ AL V D Q ++ T F+ + ++ + Sbjct: 296 GELCGHPPLLLLDDVLAELDPQRQLALLEAVGDT-HQCLVSATHLDAFEGEWRQRSQIL 353 >gi|113953191|ref|YP_729686.1| recombination protein F [Synechococcus sp. CC9311] gi|113880542|gb|ABI45500.1| DNA replication and repair protein RecF [Synechococcus sp. CC9311] Length = 345 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 74/342 (21%), Positives = 144/342 (42%), Gaps = 17/342 (4%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 +G NGVGK+N+LE++ L R R + D+ + + ++ Sbjct: 1 MIGSNGVGKSNLLESVELLGSLRSHRSSQDGDLIHWDASRALLKATCADQQI------LE 54 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 LE R R R + N ++ +L LR + G RR++LDR+V + Sbjct: 55 LELR-RRGGRQAKRNGKSLQRQLDLIGPLRCVGFSALDLHLVRGEPALRRQWLDRVVLQL 113 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDS-----SWCSSIEAQMAELGVKINIARVEMIN 206 +P + + + RL+R R + G S + S + QMA + +I+ R+ + Sbjct: 114 EPVYADLISRYGRLLRQRAQFWRRGGLSSGMEPQALLESFDTQMALVSTRIHRRRLRALA 173 Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMSRRT 264 L L + + + L L ++ + + ++L + R + Sbjct: 174 RLEPLAAVWQDRLSEGREHLQLGYSPGSALIGEEQEESWRLSIEQQLREQRSEEERLGSC 233 Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 +GPHR ++ + + GS G+Q+ +++ + +A +L+ G P+LLLD++ A Sbjct: 234 RVGPHRDEIEMRI-NGTAARRFGSAGQQRTLVLALKMAELQLVGELCGEPPLLLLDDVLA 292 Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFM 365 LD ++ AL V + Q ++ T F+ E ++ + Sbjct: 293 ELDPTRQLALLEAVGE-NHQCLVSATHLDAFEGGWREQSQIL 333 >gi|320532811|ref|ZP_08033588.1| recombination protein F [Actinomyces sp. oral taxon 171 str. F0337] gi|320134962|gb|EFW27133.1| recombination protein F [Actinomyces sp. oral taxon 171 str. F0337] Length = 349 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 125/345 (36%), Gaps = 37/345 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y SL L + + FVG NG GKTN++EAI +L+ R + + Sbjct: 1 MYVSDLSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTAL 60 Query: 65 TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R G R + G +++E ++ R ++N R D L LR Sbjct: 61 VRRTAPGQAQPAGAVVRARAVHGERPSVLEIEIIAGKANRA-RLNRGGCRPRD-LLGVLR 118 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS- 180 P + RR FLD +V + P + ++++ R LL Sbjct: 119 AVVFAPEDLSLVRAEPGIRRGFLDDLVITLRPGLAGVRAEHDKILAQRASLLKSARAARS 178 Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-----HIKLSLT 229 S +AQ+A ++ ARV+++ L + + + +L+ Sbjct: 179 STASMLSTLEIWDAQLAAAAARLIAARVDVVRRLRPWVASAYETVSGACGQRSRAQLAYR 238 Query: 230 GFL---------DGKFDQSFCALKEEYAK----------KLFDGRKMDSMSRRTLIGPHR 270 L D + ++ A +E + + + LIG HR Sbjct: 239 SSLLTHEGSPEPDPHDESAWLAGEETLLDETALATRLESAMGELHAREIDRGANLIGAHR 298 Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315 DL + S GEQ + + + LA ++ Sbjct: 299 DDLSLFLTGLP-ARGFASHGEQWSLALALRLASYDMLRTDIDAYG 342 >gi|288573677|ref|ZP_06392034.1| DNA replication and repair protein RecF [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569418|gb|EFC90975.1| DNA replication and repair protein RecF [Dethiosulfovibrio peptidovorans DSM 11002] Length = 354 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 80/361 (22%), Positives = 151/361 (41%), Gaps = 21/361 (5%) Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 FRN + R+ +D + + +G NG GKTNILE++ L+ F+ + + S Sbjct: 9 RNFRNLETGRIKWDRKLNLLIGPNGAGKTNILESLHILTGWGPFKSLRKSPLVNWNSDE- 67 Query: 73 FSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131 + +EG EG ++ I+ +++C D + + +P Sbjct: 68 --SRGFLEGTFEGEDNVLIQSSVTSRCAMKC----DGKRSNCASIRFRVPALAFLPGDLA 121 Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191 + G RRRFLD + + P + ++ ++ R +R + LL+EG I++ MA Sbjct: 122 LIEGGPSVRRRFLDVLCALLYPVYALKLTEYRRAVRHKRALLSEGRS----TELIDSVMA 177 Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251 + I R + A++ + + P I+L+L+ G + Y + + Sbjct: 178 PMAEWIWTCREKASLAVTMGLESFSDLLPGP-IELALSRGGIGLAGNNPIG----YIEGV 232 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 R+ + S R L+GPHR DL +D + S G+++ + + +A + Sbjct: 233 RSRRRAEIGSGRPLVGPHRDDLTIDASGMEASSRF-SRGQRRRTSLAMVMAAGWAVERKL 291 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371 +PILLLDE+++ LD+ R + G QIF + + + + + Sbjct: 292 RRSPILLLDEVASELDQSGREITVETLVSSGWQIFAATAEDDL---IRWPGSLWTVREGR 348 Query: 372 A 372 Sbjct: 349 I 349 >gi|227487660|ref|ZP_03917976.1| recombination protein F [Corynebacterium glucuronolyticum ATCC 51867] gi|227092354|gb|EEI27666.1| recombination protein F [Corynebacterium glucuronolyticum ATCC 51867] Length = 267 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 10/249 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++ L L T+F G NG GKTNI+E+I +L+ R A + Sbjct: 1 MFVRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V G ++ +++ + + Q+N +R EL +R Sbjct: 61 VRAGADAAQLAATVVSGG---RELVVRMTVKP-HAANLAQLNRTRLRHPRELLGGVRCVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179 P + +G RRR +D ++ PR ++ER+++ RN LL + + Sbjct: 117 FSPEDLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSM 176 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 ++Q+A LG ++ AR +I L L+ E PH + +L ++ Sbjct: 177 HGMLDVWDSQLASLGAELVTARSALITRLHPLVEAAY-LEIAPHSRPPAISYLTRDQGET 235 Query: 240 FCALKEEYA 248 ++ A Sbjct: 236 TAETEDAAA 244 >gi|116072584|ref|ZP_01469850.1| RecF protein [Synechococcus sp. BL107] gi|116064471|gb|EAU70231.1| RecF protein [Synechococcus sp. BL107] Length = 353 Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats. Identities = 77/350 (22%), Positives = 154/350 (44%), Gaps = 16/350 (4%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 + + +G NG+GK+N+LEA+ L R R + D+ + P A + Sbjct: 1 MELTESRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWDRP-----LALLRAD 55 Query: 83 EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142 G D ++LE R + + V+ R +D L LR + G RR+ Sbjct: 56 VGDGD-RLELELRRRGGRQARRNGKVLDRQLD-LIGPLRCIGFSALDLDLVRGEPALRRQ 113 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS----WCSSIEAQMAELGVKIN 198 +LDR+V ++P + + + RL+R R++L +++ + + QMA + +I+ Sbjct: 114 WLDRVVLQLEPVYADLISRYTRLLRQRSQLWRSHRQNTAERSGLLDAFDVQMALISTRIH 173 Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRK 256 R ++ L + + + +L L + D ++ + ++L + R+ Sbjct: 174 RRRRRALHRLEPIAQRWQSHLSSGKERLELRYQPGSRLDGEEAEEPWRLAIEEQLRNQRE 233 Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316 + +GPHR ++ + ++ GS G+Q+ +++G+ LA L+ G P+ Sbjct: 234 DEERLGNCRVGPHRDEINM-VLGESPARRFGSAGQQRSLVLGLKLAELELVKELCGEPPL 292 Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFM 365 LLLD++ A LD ++ L V + Q ++ T F + + A+ + Sbjct: 293 LLLDDVLAELDPIRQQLLLEAVGN-DHQCLISATHLDGFHEGWRQEAQIL 341 >gi|158311871|ref|YP_001504379.1| DNA replication and repair protein RecF [Frankia sp. EAN1pec] gi|158107276|gb|ABW09473.1| DNA replication and repair protein RecF [Frankia sp. EAN1pec] Length = 457 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 23/275 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+YA L LV + T FVG NG GKTN++EAI F++ R A+ A + Sbjct: 1 MHLTHLSLTDFRSYARLDLVLEPGVTTFVGSNGQGKTNLIEAIGFVATLGSHRVANDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G V G ++++ ++ R +++N + ++ L Sbjct: 61 VREGCGQAVVRARIVRGDRAAL---VEMQIVPGKANR-VRLNRAPVARARDVAGLLATVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEG 176 P + G ERRRFLD ++ A PR D++R+++ R+ LL G Sbjct: 117 FAPEDLALVKGDPAERRRFLDDLLVARAPRMAAVQSDYDRVLKQRSALLRSAGAARRAGG 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 D + +A+ G ++ AR+ ++ L + + Sbjct: 177 RGDLRTLDVWDRHLADHGAELLAARLALVEELRPRVESAYAAVAGQDAPTGIEYRSTVTL 236 Query: 237 DQSFCALKEEYAKKLFDGR----KMDSMSRRTLIG 267 D S + L GR + D + R G Sbjct: 237 DSSPD-------RALSPGRAGLGEPDGDAGRNGNG 264 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 AL+E L R + TL+GPHR DL++ + + S GE + + + Sbjct: 326 AALEEAILAGLAAVRTQEIERGVTLVGPHRDDLLLSVNGRP-ARGYASHGESWSLALALR 384 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLN 359 LA L+ P+LLLD++ A LD +R L +V D Q+ +T D V L Sbjct: 385 LASFELL-RADDREPVLLLDDVFAELDTRRRARLAALVADAE-QVLVTAAVDADVPAEL- 441 Query: 360 ETAKFMRISNHQA 372 + + + Sbjct: 442 -AGVRFEVVSGEV 453 >gi|256370827|ref|YP_003108651.1| DNA replication and repair protein RecF [Acidimicrobium ferrooxidans DSM 10331] gi|256007411|gb|ACU52978.1| DNA replication and repair protein RecF [Acidimicrobium ferrooxidans DSM 10331] Length = 346 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 84/364 (23%), Positives = 148/364 (40%), Gaps = 25/364 (6%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 + L I+ RN VG NG GKT++LE++S + GR FR + + R+ Sbjct: 2 RSLRITGLRNLDLTIDHVPDDIIAVVGSNGHGKTSLLESVSVVLAGRSFRTHDRSALVRV 61 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLV 126 G +E +++ R DR R +++ + L + Sbjct: 62 GHDEAVVVA----DVERELAPPVRVGRRVDREGRLETRVDGQREQR----GPSLPVVSFH 113 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186 P +I SG +RRRFLD V +D R+ ER++R R L D S + Sbjct: 114 PDDVQIASGGPEQRRRFLDECVVGLDRGAAIRLRQAERVLRQRTEALRAPVLDEVTLSIL 173 Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 E ++A V++ R ++ + + ++ +T G + Sbjct: 174 EERLARASVEVAELRARAAEVIAPHARAVIDEMLMSAGRVVVTYRGAGD--------EAT 225 Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 ++L R D T +G HR D+ + + I GS G+ + V+V + +A AR Sbjct: 226 LLEQLRARRGDDRRRGVTSVGFHRDDVEILLDGEPIRRM-GSQGQVRTVVVALKVALARA 284 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + T P+L+LD++ A LD ++ ++ G Q F++ T + + +R Sbjct: 285 MEAVTKEPPVLVLDDLLAELDAERARRAVAMME--GMQAFISHT-----APVEGSGFELR 337 Query: 367 ISNH 370 IS+ Sbjct: 338 ISHG 341 >gi|148243191|ref|YP_001228348.1| recombination protein F [Synechococcus sp. RCC307] gi|147851501|emb|CAK28995.1| DNA replication and repair protein RecF [Synechococcus sp. RCC307] Length = 342 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 154/346 (44%), Gaps = 11/346 (3%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 +G+NG GK+N+LEA+ L+ R R + D+ + G S A V G E +++I+ Sbjct: 1 MLGNNGEGKSNLLEAVELLASLRSHRCSQDRDLIQRGETS-SRLKAWV-GEEATDELAIE 58 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 L + R +Q N ++ +L LR + RR +LDR+V + Sbjct: 59 LRRQGGR---RVQRNGKLLERHADLIGPLRCVGFSALDLSLVRDEPAGRRDWLDRVVQQL 115 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDS-SWCSSIEAQMAELGVKINIARVEMINALSS 210 +P + + RL+R R++LL + + + Q+A +G +++ R + L Sbjct: 116 EPVYGELLSRHGRLLRQRSQLLKRQLSNRDELLDAFDHQLAVIGTRLHRRRHRALKRLEP 175 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 L + ++ + +L L + D+ ++ +L + R ++ +GP Sbjct: 176 LAAPWQERLSGGREQLQLLYQPGTQLNGDEDEHVWQQCLLNQLQEQRPQEARLGYCSVGP 235 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 R D+ + + GS G+Q+ +++ + LA L+++ +G P+LLLD++ A LD Sbjct: 236 QRDDVALLLGGEP-ARRLGSAGQQRCLVLALKLAELELVTSLSGVPPLLLLDDVLAELDP 294 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAKFMRISNHQAL 373 ++ L V + G Q ++ T + A+ + + L Sbjct: 295 QRQQLLLEAVGE-GHQCLVSATHLQSCVADWQQRAQLVEVRAGAVL 339 >gi|296531698|ref|ZP_06894532.1| recombination protein F [Roseomonas cervicalis ATCC 49957] gi|296267973|gb|EFH13766.1| recombination protein F [Roseomonas cervicalis ATCC 49957] Length = 259 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 6/259 (2%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 +++ L + +FR+YA L L F A + G NGVGKTN+LEAIS L+PGRG R A Sbjct: 4 PPALRLTRLMLQDFRSYAQLDLRFQAGVVVIAGRNGVGKTNLLEAISLLTPGRGLRNARA 63 Query: 62 ADVTRIGSPS--FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 ++ R ++ +G G I + DR R +++ +R EL+ Sbjct: 64 GELGRREGEESRPWTIAGHFDGPAGPMTIGTGQDPASDR--RGFRLDGAPLRSQAELSAQ 121 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + WL P MDR+F + RR+FLDR+V+A +P H R + +E M RNRLL EG D Sbjct: 122 IAALWLTPQMDRLFQEGASGRRKFLDRLVWAREPSHARDVAAYESAMSQRNRLLAEGRRD 181 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238 + W +++E MA V +R L++ + + FP +L L + ++ Sbjct: 182 ARWLAALEDTMARHAVAAIASRRTSCAQLNATLRAGIA-GAFPAARLELLCPIATALEER 240 Query: 239 SFCALKEEYAKKLFDGRKM 257 A++E L R Sbjct: 241 PALAVEESLRDGLAADRPR 259 >gi|288916708|ref|ZP_06411083.1| DNA replication and repair protein RecF [Frankia sp. EUN1f] gi|288351963|gb|EFC86165.1| DNA replication and repair protein RecF [Frankia sp. EUN1f] Length = 433 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 12/226 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++++FR+Y L LV + T FVG NG GKTN++EAI F++ R A+ A + Sbjct: 1 MHLTHLSLTDFRSYPRLDLVLEPGVTTFVGSNGQGKTNLIEAIGFVATLGSHRVATDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ V G ++++ ++ R +++N + ++ L Sbjct: 61 VREGTTQAVVRSRIVRGDRAAL---VEIQIVPGKANR-VRLNRAPVPRALDVAGLLATVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176 P + G ERRRFLD ++ A PR D+ER+++ R+ LL G Sbjct: 117 FAPEDLALVKGDPAERRRFLDELLVARSPRMAAVQADYERVLKQRSALLRTAGAARRSGG 176 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 D + +A+ G ++ AR+ ++ L + Sbjct: 177 RGDLRTLDVWDGHLADHGAELLAARLALVEELRPRVRSAYAAVAGE 222 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 L E L R + TL+GPHR DL++ + + S GE + + + Sbjct: 302 AELAEAILTGLAAVRSQEIERGVTLVGPHRDDLLLSVKGRP-ARGYASHGESWSLALALR 360 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLN 359 LA L+ P+LLLD++ A LD +R L +V Q+ +T + V L Sbjct: 361 LASYDLL-RADDREPVLLLDDVFAELDVRRRARLAALVAPAE-QVLVTAAVEADVPAEL- 417 Query: 360 ETAKFMRISNHQA 372 +S+ + Sbjct: 418 -AGVRFEVSSGEV 429 >gi|294101018|ref|YP_003552876.1| DNA replication and repair protein RecF [Aminobacterium colombiense DSM 12261] gi|293615998|gb|ADE56152.1| DNA replication and repair protein RecF [Aminobacterium colombiense DSM 12261] Length = 339 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 148/353 (41%), Gaps = 25/353 (7%) Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82 L + A + VG+NG GKTN LEAI LS FR + + + + A + G Sbjct: 6 LEWAAGLNLLVGNNGSGKTNALEAIHILSGWGPFRSSRKSFLVNWDTEE---KQAYLRGY 62 Query: 83 -EGLADISIKLETRDDRSVRC--LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139 G ++ I + ++C +I +R + + +P I G Sbjct: 63 FSGETNLDIVATVGEKNIIQCDGKRITHGNVRSL------IPALAFLPGDLAIVDGAPSV 116 Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199 RR+FLDR+ + P + R+M D R +R R LL E D S S + +A L I Sbjct: 117 RRQFLDRLCALLFPLYVRKMSDCRRALRHRVILLRE-RKDPSLTSKV---LAPLVSWIWS 172 Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 R ++ L I E+ + P + LT G D ++Y + + R+ + Sbjct: 173 TRAAAVDLLKIGIQEF--RILLPS-DIVLTFERGGALD--LQDPMQDYWESVRKWREKEH 227 Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 ++ +GP R D+I+ ++++I S G+++ V + LA + P+L+L Sbjct: 228 ITGVPQVGPQRDDMIITTKGQSVSIVM-SRGQRRRTAVALMLAAGWAVERKLRRKPLLIL 286 Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 DEI+A LD+ RN L + + Q+F + S ++ Sbjct: 287 DEIAAELDDRGRNILIDALVESSWQVFAATAESS---MNGWPGTVWQVRQGNI 336 >gi|296105500|ref|YP_003617200.1| DNA replication and repair protein RecF [Legionella pneumophila 2300/99 Alcoy] gi|295647401|gb|ADG23248.1| DNA replication and repair protein RecF [Legionella pneumophila 2300/99 Alcoy] Length = 309 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 60/325 (18%), Positives = 128/325 (39%), Gaps = 20/325 (6%) Query: 49 FLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 LS FR A + G + FA + IS++ D +++N+ Sbjct: 1 MLSCAHSFRSREVAPIISYGQNQ-LNVFAH---TYDESTISVQKSITDGTQ---IKLNNQ 53 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 +L L + + +I RR LD +F + + + D++R++ Sbjct: 54 FCCTTSQLAYALPCQVIYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQ 113 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 RN LL + + Q+++L +++ AR + + + + +I ++ Sbjct: 114 RNALLKSRATYEHFI-PWDQQLSQLANQLDKARNDYFLQWQPKFYQVLS--DLTNISCTI 170 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + + ++E L D T GPH++DLI++ + S Sbjct: 171 EYYKGWDRKNAGQNMEE----LLQKSFDSDKNKLYTQYGPHQADLIINIEQYRVKHTL-S 225 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 G+QK++L+ + LA +L+ + L+D+++A LD+ + L + +T Q +T Sbjct: 226 RGQQKIILIALKLAQGQLL----DKDCLYLIDDLAAELDDYHQRNLIKYLTQQKGQFVIT 281 Query: 349 G-TDKSVFDSLNETAKFMRISNHQA 372 + + +D L + ++ Sbjct: 282 NLINNNNYDILPIDSGLFEVNCGAI 306 >gi|148927257|ref|ZP_01810828.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] gi|147887343|gb|EDK72796.1| DNA replication and repair protein RecF [candidate division TM7 genomosp. GTL1] Length = 309 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 110/262 (41%), Gaps = 8/262 (3%) Query: 94 TRDDRSVRCLQINDVVIRVVDELNKH-LRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152 + + + +++ +V + +H L + P R+ G RR F+D ++ ++ Sbjct: 40 LKLKKRLAAKRLSSMVSKKQRLTYQHKLPVVLFEPGDLRLLHGSPARRRLFIDTLISQLE 99 Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 P + + ++R+++ RN LL + + ++E G +I R + L++ + Sbjct: 100 PLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDVALSEYGARIVAERQKYSALLNASL 159 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 E + +SL F + ++++ L D T +GPHR D Sbjct: 160 RERYRAIAHTKDIVSLAYS----FQEXAESVQQAMVSALHAHHVRDKALGYTTVGPHRHD 215 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 LI D + S GE + +++ + ++ P+LLLD++ + LD +R Sbjct: 216 LIFSMND-VEATSIASRGETRSIVLALKFIEVEMLRVYRDQPPLLLLDDVFSELDSTRRM 274 Query: 333 ALFRIVTDIGSQIFMTGTDKSV 354 AL + +Q +T T+ + Sbjct: 275 ALVEV--GSSTQTVITTTNADI 294 >gi|260654351|ref|ZP_05859841.1| putative DNA replication and repair protein RecF [Jonquetella anthropi E3_33 E1] gi|260630984|gb|EEX49178.1| putative DNA replication and repair protein RecF [Jonquetella anthropi E3_33 E1] Length = 351 Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 19/353 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L FRN A+ ++ F ++ + G+NG GKTN LEA++ L F ++++ Sbjct: 1 MRVVGLRTRRFRNLAAQKVSFSSEMNLITGENGSGKTNFLEALNCLCGWGPFSAGRWSEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 T F +G G ++++ S+R D ++ Sbjct: 61 TCWEENGAFELVGSFDGESG---GTVQVLCASRPSLRL----DGDRATWTDVRLFAPCLS 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P+ + G + RRRFLD + P + RR+ D+ RL+R + LL G Sbjct: 114 FLPAHMALIEGGPVVRRRFLDVGTALLYPLYARRLSDWRRLVRHKRYLLRLGKPG----D 169 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-FDQSFCAL 243 + M L + + R E + AL + + P +++ L G FD Sbjct: 170 VADRIMKPLAGWLWLKREEFVGALQRELDAQADLLSCP-VQIGLHRGGGGACFDP----- 223 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 +E++A L + S L+GPHR DL + ++ I + S G+++ + + LA Sbjct: 224 EEDFAAGLERLGPAERKSGLPLVGPHRDDLTLTVSERR-AIDYFSRGQRRRAALALILAA 282 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 + + G +PILL+DE+++ LDE R + + + G Q+F + D Sbjct: 283 GGAVKSQLGRSPILLIDEVASELDELGRQKVVQALGQSGCQVFAATAEPQSLD 335 >gi|123966993|ref|YP_001012074.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9515] gi|123201359|gb|ABM72967.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9515] Length = 325 Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 149/334 (44%), Gaps = 18/334 (5%) Query: 43 ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102 +LE++ LS R R S D+ + S + +++ + D+ + L + + Sbjct: 1 MLESVEVLSQLRSSRALSDKDLIKNDSEMA-VIYGQIDFTD---DLKVNLF---RKGSKK 53 Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 + +ND +++ E+ ++R + I RR ++DR+V ++P + + F Sbjct: 54 IYVNDSLLKKQSEIKNYIRSVCFCSNDINIVKSEPGYRRTWIDRVVSQLEPIYVELIHRF 113 Query: 163 ERLMRGRNRLLTEGYFDSSW----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 RL++ R+ F S + QM+ + +I R I+ + + + Sbjct: 114 NRLLKQRSYFWRSESFQKDQSSEVIESFDIQMSLICTRIFRRRRRAISRIRPYVEYWHNH 173 Query: 219 ENFPHIKLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274 + ++S+ + ++ + + +L R +++++ + GPHR D+ Sbjct: 174 LSKSKEQISINYLSSFENIDEAEEEEEVISNQMVDQLQKQRAIEALTGKCSFGPHRDDIE 233 Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 D ++ +GS+G+Q+ ++ + +A L+ N P+L+LD++ A LD +++N L Sbjct: 234 FLINDISLR-KYGSSGQQRTFILALKMAELDLLRNMINLPPLLILDDVLAELDMNRQNLL 292 Query: 335 FRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367 V SQ F++ T F+ S +++ + + Sbjct: 293 LNSVGK-ESQCFISATHLDTFNQSFISSSQMIHL 325 >gi|33862129|ref|NP_893690.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634347|emb|CAE20032.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 323 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 62/332 (18%), Positives = 148/332 (44%), Gaps = 17/332 (5%) Query: 44 LEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 +E++ LS + R S D+ S + F +++ + ++ + L + + + Sbjct: 1 MESVEVLSQLKSNRALSDKDLIENDSDMA-AIFGQIDFTD---NLKVNLF---RKGAKKI 53 Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +ND +++ E+ ++R + I RR ++D++V ++P + + F Sbjct: 54 YVNDSLLKKQTEIQNYIRSVCFCSNDIYIVKSEPGFRRSWIDKVVSQLEPVYVELIHRFN 113 Query: 164 RLMRGRNRLLTEGYFDSSW----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 RL++ R F S + QM+ + +I R ++ + + + Sbjct: 114 RLLKQRTHFWRSESFQKDIYSEVIESFDIQMSLISTRIFRRRRRALSKIKPYVEYWHNHL 173 Query: 220 NFPHIKL---SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 + ++ L+G + ++ + ++ ++L R +++++ + GPHR D+ Sbjct: 174 SKSKEQIGINYLSGLENINQEEEEEVISKKILEQLQKQRPLEAVTGKCNFGPHRDDIEFL 233 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 + +I +GS+G+Q+ ++ + +A L+ N PIL+LD++ A LD ++N L Sbjct: 234 INNISIR-KYGSSGQQRTFILALKMAELDLLRNMIDLPPILILDDVLAELDITRQNLLLN 292 Query: 337 IVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367 V SQ ++ T F+ S +++ + + Sbjct: 293 SVGK-DSQCLISATHLDKFNKSFLSSSQMIYL 323 >gi|198282151|ref|YP_002218472.1| DNA replication and repair protein RecF [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666274|ref|YP_002424517.1| DNA replication and repair protein RecF [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246672|gb|ACH82265.1| DNA replication and repair protein RecF [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518487|gb|ACK79073.1| DNA replication and repair protein RecF [Acidithiobacillus ferrooxidans ATCC 23270] Length = 350 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 142/368 (38%), Gaps = 25/368 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L+I R +L L D Q +G NG GK+++LEAI L G+ +R S V Sbjct: 1 MPLEALHIQSVRCIETLDLKTDRQWNWLIGANGAGKSSVLEAIHVLGTGQTWRHGS-RHV 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G ++ + A + G L R R ++ + + L L + Sbjct: 60 LREGDDAYLVS-AHLSGHF--------LALRRRGEEREIRYDGEPLGSAWLLLDILPLQS 110 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 L SG + RRR LD ++ D + + R ++ RN L + W Sbjct: 111 LHEDNSHFVSGTAEGRRRVLDWGIYYADRYYGTVFRQYRRALQQRNAWLKSDHGRQPW-- 168 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + + G I R + A+ ++ ++ + LSL K + Sbjct: 169 --DDGVIVAGEDIQQRRQAHLAAVQLEVVTLWERWSGSLSGLSLHLHSGWKEGMA----- 221 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 L + D + T GPHR++L K S G+ +V+ + LA Sbjct: 222 --LGDCLLRDHEQDREAGYTHSGPHRANLAFRVRGKPAPDIL-SRGQLRVLGLAYRLAQV 278 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAK 363 +++ P +L+D+ +A LD R+ + +G QIF T + + ++ + Sbjct: 279 KILKQAGLPLPTILIDDFAAELDASARDWWVNELDLLGVQIFAAVTTARQIPATVGGS-- 336 Query: 364 FMRISNHQ 371 ++ Q Sbjct: 337 HFCLAAGQ 344 >gi|330813295|ref|YP_004357534.1| DNA recombination and repair protein RecF [Candidatus Pelagibacter sp. IMCC9063] gi|327486390|gb|AEA80795.1| DNA recombination and repair protein RecF [Candidatus Pelagibacter sp. IMCC9063] Length = 362 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 93/365 (25%), Positives = 171/365 (46%), Gaps = 9/365 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + F+++ + + + G+NG+GKTN+LE++SF S +G R + + Sbjct: 4 IEKIKLQNFKSHTLFEKNIPSNNIVIHGNNGIGKTNLLESLSFFSNSKGMRANKLENFLQ 63 Query: 67 IG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 F +++ +IS K+ + D+ + I+ + ++ + Sbjct: 64 KQNNIQSEFAQAECQLKQSNYSTNISYKIYKQADQISKNFFIDSKKSSNL-QIANLVNFI 122 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 WL P MD+I +++F+D+++ ++ R + DF++L R LLT + D W Sbjct: 123 WLSPHMDKIMYEEGSIKKKFIDKIISNLNQDFSRYLSDFKKLSEERIALLTNSH-DIKWI 181 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 S +E++MA L I I R + I L+ L E ++ F K++++ L+ + Sbjct: 182 SIVESKMAILFYLILIERRKKIKDLNILAEEKLK--LFSRFKINISNELEKYLFDEKKCI 239 Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303 E K F+ R +D+ +R P+ + K + STGEQK +L+ I LA Sbjct: 240 IE-IEKIFFNNRSLDTSIKRNTFSPNTDRVTFFNRTKNLNSELCSTGEQKSILLSIILA- 297 Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363 + ILL DEIS+H+DE F V +Q + TGT K++F ++ A Sbjct: 298 FGWMYKQRNIQFILLFDEISSHIDEKNMENFFTEVAKFETQAWYTGTKKNIFQVIDNKAF 357 Query: 364 FMRIS 368 F+ ++ Sbjct: 358 FIDLA 362 >gi|126640118|ref|YP_001083102.1| recombination protein F [Acinetobacter baumannii ATCC 17978] Length = 280 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 117/279 (41%), Gaps = 15/279 (5%) Query: 99 SVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158 + +++N + +L K L + + P I + RR+ LD ++F ++P Sbjct: 7 GEQLMKVNGDTVATQGQLAKLLPLQHIDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFA 66 Query: 159 MIDFERLMRGRNRLLT-EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217 + R ++ RN LL + +++ G ++ R+ ++ + + Sbjct: 67 WQYYSRALKQRNTLLKTRRNLSLADLEPWNKMLSDYGEILHSQRLSIVEQWNVYFQNDLS 126 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 + P +++ L +Q + L + + D R T GPHR+DL + Sbjct: 127 QL-LPDLEIELEYSPGFHTEQG-------LMQDLLNQHQKDIERRYTEYGPHRADLRLKT 178 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 S G++K++++ + L+ ++ + ++LLD+++A LD + L Sbjct: 179 PFGHADDVL-SRGQKKLLIIALKLSQIAMLH-ASNKETVVLLDDLTAELDLTAQQRLIER 236 Query: 338 VTDIGSQIFMTGTD----KSVFDSLNETAKFMRISNHQA 372 ++ +GSQ+FMT D K L+ + + + + Q Sbjct: 237 LSQLGSQVFMTTLDHASVKKHLHDLSISYQLFSVESGQV 275 >gi|282852317|ref|ZP_06261659.1| DNA replication and repair protein RecF [Lactobacillus gasseri 224-1] gi|282556059|gb|EFB61679.1| DNA replication and repair protein RecF [Lactobacillus gasseri 224-1] Length = 177 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 5/182 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + +FRN+ L+ FD IF+G N GKTN+LEAI FL+ R R S ++ Sbjct: 1 MYLANFELKDFRNFKELKTDFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS FA ++G + + ++L+ R + + +N + + + + Sbjct: 61 IRFGSK-----FAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKKLSAYVGQMNAIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + G RRRF+D I+ + + ++++ RN L + + Sbjct: 116 FSPEDLALVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQLSIKKANDQ 175 Query: 185 SI 186 Sbjct: 176 VF 177 >gi|167508523|gb|ABZ81468.1| recombination protein F [Mycobacterium avium subsp. hominissuis] Length = 289 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 21/286 (7%) Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + A + R G+ + V + ++ LE R+ + ++N +R E+ Sbjct: 1 RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174 LR P + G ERRR+LD + P D+++++R R LL Sbjct: 57 LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116 Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226 D ++++AE G ++ AR++++N L+ + + Q + Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176 Query: 227 SLTGFLDGKFDQSFCALKEEYAKK-----LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L A +Y + L R + L+GPHR DL + ++ Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLSGLAARRDAEMERGMCLVGPHRDDLELWLGER- 235 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280 >gi|254525401|ref|ZP_05137453.1| RecF protein [Prochlorococcus marinus str. MIT 9202] gi|221536825|gb|EEE39278.1| RecF protein [Prochlorococcus marinus str. MIT 9202] Length = 319 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 61/328 (18%), Positives = 141/328 (42%), Gaps = 18/328 (5%) Query: 49 FLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 LS + R S D+ S + D+ + L + + +N+ Sbjct: 1 MLSQLKSNRALSDKDLIENKSDKAVVIG----QINFKDDLKLNLFRNGP---KRIYVNES 53 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 +++ E+ ++R + I RR ++D++V ++P + + F RL++ Sbjct: 54 ILKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYLDLISRFNRLLKQ 113 Query: 169 RNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 R+ F S S + QM+ + +I R + + + + + Sbjct: 114 RSHFWRSESFLKTQSSDIVESFDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSKE 173 Query: 225 KLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 ++ + K ++ + ++ A++L + R ++S++ + GPHR D+ + Sbjct: 174 QIDINYLSGIKNISLEEEEEEVISKKIAEQLLNQRSIESLTGKCNFGPHRDDIEFLINNV 233 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 ++ + S+G+Q+ ++ + +A L++ T +PIL+LD++ A LD ++N L V Sbjct: 234 SVR-KYASSGQQRTFILALKMAELDLLTKTLNVSPILILDDVLAELDLTRQNLLLNSVGK 292 Query: 341 IGSQIFMTGTDKSVFD-SLNETAKFMRI 367 SQ F++ T F+ S +++ + + Sbjct: 293 -DSQCFISATHLDKFNQSFLSSSQMIHL 319 >gi|33863982|ref|NP_895542.1| recombination protein F [Prochlorococcus marinus str. MIT 9313] gi|51316349|sp|Q7V559|RECF_PROMM RecName: Full=DNA replication and repair protein recF gi|33635566|emb|CAE21890.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9313] Length = 365 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 150/360 (41%), Gaps = 17/360 (4%) Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74 +RNY+ L+L + +G NG+GK+N+LEAI L R R +S D+ Sbjct: 4 YRNYSRLQLELTENRLLVIGPNGIGKSNLLEAIELLGSLRSHRASSDQDLIHWEEQRALL 63 Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 + + ++L + R + N + +L LR + Sbjct: 64 RAI----ADDTEKLELELRRQGGR---QARRNGKTLTRQLDLIGPLRCVGFSALDLNLVR 116 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----DSSWCSSIEAQ 189 G RR++LDR+V ++P + + F +L+R R++L + S + + Q Sbjct: 117 GEPALRRQWLDRVVQQLEPIYSDLISRFNKLLRQRSQLWRQWRHIPIQERDSLLDAFDVQ 176 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEY 247 MA + +I+ R + L L + + + +L L + +++ + Sbjct: 177 MALVSTRIHRRRSRALARLEPLAARWQETLSKHKERLRLDYQPGSQLEGEEAEEPWRLAI 236 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 +L R + IGPHR ++ + D + GS G+Q+ V++ + LA L+ Sbjct: 237 ETQLLGQRSEEERLGSCRIGPHRDEVRLLLND-SEARRFGSAGQQRTVVLALKLAELELV 295 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMR 366 G P+LLLD++ A LD ++ L V + Q ++ T F D + ++ + Sbjct: 296 GELCGEPPLLLLDDVLAELDPGRQLLLLEAVGEK-HQCLVSATHLEGFQDEWQQQSQIIE 354 >gi|110832864|ref|YP_691723.1| DNA replication and repair protein RecF [Alcanivorax borkumensis SK2] gi|110645975|emb|CAL15451.1| DNA replication and repair protein RecF [Alcanivorax borkumensis SK2] Length = 332 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 78/342 (22%), Positives = 144/342 (42%), Gaps = 23/342 (6%) Query: 43 ILEAISFLSPGRGFRRAS-YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101 +LEAI F+ G R + + R G+ + + +A V G++ + I I R + Sbjct: 1 MLEAIYFIGSGGRSFRGGRLSRLVRDGAEAA-TLYAEVVGVQDVHRIGI---RRTPGGID 56 Query: 102 CLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161 ++++ + + E+ L + L P+ + G S RRRF+D +F ++ + Sbjct: 57 AIKLDGQTPKALSEVAVLLPVLALHPTSVELVFGASQLRRRFMDWGMFHVEHQFMPVWRA 116 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 ++ RN LL G + Q+++ +I R +NAL + E + Sbjct: 117 GSAALKQRNALLRAGNPNLRELGFWNQQLSQTSDRIEGLRRGYLNALQRGLDEAL-TVLA 175 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 P +K+ L Q+ E YA+ L + D + G HRSD+ ++ Sbjct: 176 PELKIRLR-------LQTGLHKGESYAQALSRLQSDDLRRGFSQAGFHRSDIRIE-SHGV 227 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S G+ K+V G+ LA +IS +G LL+D+++A LDE+ RN L + Sbjct: 228 VARDRLSRGQAKLVAYGLVLAQLPMISQ-SGKVCTLLVDDLAAELDEEHRNQLLGYLATT 286 Query: 342 GSQIFMTGTDKSVFDSLNET--------AKFMRISNHQALCI 375 G Q +T D + ++ K + + + + Sbjct: 287 GHQTLITALDMPQWAAIVNDNDALQSVENKMFHVEHGKLRSL 328 >gi|323717342|gb|EGB26547.1| DNA replication and repair protein recF [Mycobacterium tuberculosis CDC1551A] Length = 328 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 119/304 (39%), Gaps = 24/304 (7%) Query: 63 DVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + R+G+ ST +G E D+ I V ++N +R ++ LR Sbjct: 2 PLIRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLR 56 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EG 176 P + G +RRR+LD + P ++ER++R R LL Sbjct: 57 AVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARY 116 Query: 177 YFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--- 230 D ++++AE G ++ AR++++N L+ + + Q S+ Sbjct: 117 RGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRAS 176 Query: 231 ----FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 + D L L R + L+GPHR DLI+ D+ Sbjct: 177 MDVTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GF 235 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + V + LA +L+ G P+LLLD++ A LD +R AL + Q+ Sbjct: 236 ASHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVL 293 Query: 347 MTGT 350 +T Sbjct: 294 VTAA 297 >gi|313671973|ref|YP_004050084.1| smc domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312938729|gb|ADR17921.1| SMC domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 335 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 146/345 (42%), Gaps = 24/345 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + + FRN+ + FD + G NG GKT+ILE+IS + G+ F+ + Sbjct: 1 MYLKDIKLRNFRNHINSIFSFDIK-NYITGKNGSGKTSILESISLIFTGKSFKTNKLKSI 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 I +FF + DI++ +T+ + L IN + + + + Sbjct: 60 INID-KNFFEISSNFSDDNVNYDITLYYDTK-----KRLTINGKRPENIINFYHNHPVIF 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + S RR FLDR +F +D + ++ + +L+ + + + + DS Sbjct: 114 YSPENEGFLSKEQEIRRNFLDRSIFYLDISYIDSLLGYNKLLELKKKYILKDVKDSLLYK 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 SI +M+ I R +I + ++ I +Y++ + + ++ D+ Sbjct: 174 SIHEKMSNYIKDIQNKRSNLIKSFNTYIEKYLRDIPSLNTEFFSLSYIPNHLDEDL---- 229 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 + + ++ L GPHR + + ++ S G++K + + Sbjct: 230 ----------LDKELILKKVLSGPHRDKITFNLNGESFE-NIASFGQRKSLSLCCIYCFL 278 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 +++ + + + ILLLDE+ + LD ++ + + Q F+TG Sbjct: 279 KVVEDFSKKSIILLLDELESGLDVERVSFFMELFDKY--QYFLTG 321 >gi|886327|gb|AAB53143.1| single-stranded DNA binding protein [Mycobacterium leprae] Length = 223 Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 12/221 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + +FR++ + L + T+F G NG GKTN++EA+ + + R + + Sbjct: 1 MYVRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + +I LE R+ R ++N ++R + E+ LR Sbjct: 61 IRAGTIRAIVSTIVVNEG---RECAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179 P + G RRR+LD + P D+++++R R LL D Sbjct: 117 FAPEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRTALLKSLAAARYRSD 176 Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217 + ++AE G ++ AR++++N L+ + + Q Sbjct: 177 QGVLDTLDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQ 217 >gi|116075787|ref|ZP_01473046.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. RS9916] gi|116067102|gb|EAU72857.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. RS9916] Length = 356 Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 77/343 (22%), Positives = 150/343 (43%), Gaps = 16/343 (4%) Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE 80 ++L +A + +G NGVGK+N+LE++ L R R + D+ + AR++ Sbjct: 1 MQLEIEAPRLLVIGRNGVGKSNLLESVELLGSLRSHRASQDQDLIHWDARE-----ARLK 55 Query: 81 GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER 140 D ++L+ R + R + N + +L LR + G R Sbjct: 56 ARTVDHD-ELELQLR-RKGGRQAKRNGKNLERQLDLIGPLRCVGFSALDLHLVRGEPALR 113 Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----DSSWCSSIEAQMAELGV 195 R +LDR+V ++P + + + RL+R R +L G + + + QMA + Sbjct: 114 RSWLDRVVLQLEPIYAELISRYSRLLRQRAQLWRRGRGMPSAERDALLDTFDLQMALIST 173 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFD 253 +I+ R + L L ++ + + +L+L + +++ + ++L Sbjct: 174 RIHRRRRRALARLEPLASQWQTHLSQGNEQLTLRYQPGSRLEGEEAEEPWRLAIGEQLKL 233 Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313 R + +GPHR ++ +D + GS G+Q+ +++ + LA L+ G Sbjct: 234 QRSEEERLGSCRVGPHRDEISLDL-NGNPARRFGSAGQQRTLVLALKLAELELVGELWGQ 292 Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356 P+LLLD++ A LD +++ L V D Q ++ T F+ Sbjct: 293 PPLLLLDDVLAELDPERQLTLLEAVGD-EHQCLVSATHLDAFE 334 >gi|7019618|gb|AAB70169.2| RecF [Sinorhizobium meliloti] Length = 176 Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats. Identities = 85/167 (50%), Positives = 117/167 (70%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +S+FRNYA+L L D +H + G+NG GKTN++E +SFLSPGRG RRA+ Sbjct: 1 MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 YADV R+G+P FS FA V+GMEG +I + ++ R L+IN R VDEL HL Sbjct: 61 YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR +F+R MR Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMR 167 >gi|167508531|gb|ABZ81472.1| recombination protein F [Mycobacterium avium subsp. avium ATCC 25291] Length = 289 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%) Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + A + R G+ + V + ++ LE R+ + ++N +R E+ Sbjct: 1 RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174 LR P + G ERRR+LD + P D+++++R R LL Sbjct: 57 LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116 Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226 D ++++AE G ++ AR++++N L+ + + Q + Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176 Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L A +Y L R + L+GPHR DL + ++ Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGMCLVGPHRDDLELWLGER- 235 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 236 VPKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280 >gi|91070222|gb|ABE11142.1| putative DNA repair and genetic recombination protein RecF [uncultured Prochlorococcus marinus clone HF10-11H11] Length = 297 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 130/280 (46%), Gaps = 11/280 (3%) Query: 97 DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 + + + +N+ +++ E+ ++R + I RR ++D++V ++P + Sbjct: 20 RKGPKRIYVNESILKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYL 79 Query: 157 RRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 + F RL++ R+ F + S + QM+ + +I R + + + Sbjct: 80 DLISRFNRLLKQRSHFWRSESFLKTQSTDIVESFDIQMSIISTRIFRRRRRALLKIKPYV 139 Query: 213 MEYVQKENFPHIKLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 + + ++ + + ++ + ++ A++L + R +++++ + GP Sbjct: 140 EYWHNHLSKSQEQIDINYLSGIQNISPEEEEEEIISKKIAEQLLNQRSIEALTGKCNFGP 199 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR D+ + ++ +GS+G+Q+ ++ + +A L++ T PIL+LD++ A LD Sbjct: 200 HRDDIEFLINNVSVR-KYGSSGQQRTFILALKMAELDLLTKTLNVPPILILDDVLAELDL 258 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367 ++N L V SQ F++ T F+ SL +++ + + Sbjct: 259 TRQNLLLNSVGK-DSQCFISATHLDKFNQSLLGSSQMIHL 297 >gi|78780050|ref|YP_398162.1| DNA replication and repair protein RecF [Prochlorococcus marinus str. MIT 9312] gi|78713549|gb|ABB50726.1| DNA replication and repair protein RecF [Prochlorococcus marinus str. MIT 9312] Length = 297 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 131/280 (46%), Gaps = 11/280 (3%) Query: 97 DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 + + + +N+ +++ E+ ++R + I RR ++D++VF ++P + Sbjct: 20 RKGPKRIYVNESILKKQSEIKNYIRSVCFCSNDINIVRSEPSYRRTWIDKVVFQLEPVYL 79 Query: 157 RRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 + F RL++ R+ F S C S + QM+ + +I R + + I Sbjct: 80 DLISRFNRLLKQRSHFWRSESFLNSQSSDICESFDMQMSIISTRIFRRRRRALLKIKPYI 139 Query: 213 MEYVQKENFPHIKLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 + + ++ + + ++ + ++ A++L + R +++++ + GP Sbjct: 140 EYWHNHLSKSKEQIGINYLSGIQNISPEEEEEEVISKKIAEQLLNQRSIEALTGKCNFGP 199 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR D+ + ++ +GS+G+Q+ ++ + +A +S T +PIL+LD++ A LD Sbjct: 200 HRDDIEFLINNISVR-KYGSSGQQRTFILALKMAELDFLSKTLNVSPILILDDVLAELDI 258 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367 ++N L V SQ F++ T F+ S +++ + + Sbjct: 259 TRQNLLLNSVGK-DSQCFISATHLDKFNQSFLGSSQMIYL 297 >gi|157414178|ref|YP_001485044.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9215] gi|157388753|gb|ABV51458.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9215] Length = 297 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 129/280 (46%), Gaps = 11/280 (3%) Query: 97 DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 + + +N+ +++ E+ ++R + I RR ++D++V ++P + Sbjct: 20 RNGPKRIYVNESLLKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYL 79 Query: 157 RRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 + F RL++ R+ F S S + QM+ + +I R + + I Sbjct: 80 DLISRFNRLLKQRSHFWRSESFLKTQSSDIVESFDIQMSIISTRIFRRRRRALLKIKPYI 139 Query: 213 MEYVQKENFPHIKLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 + + ++ + K ++ + ++ A++L + R ++S++ + GP Sbjct: 140 EYWHNHLSKSKEQIDINYLSGIKNISPEEEEEEVISKKIAEQLLNQRSIESLTGKCNFGP 199 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR D+ + ++ +GS+G+Q+ ++ + +A L++ T +PIL+LD++ A LD Sbjct: 200 HRDDIEFLINNVSVR-KYGSSGQQRTFILALKMAELDLLTKTLNVSPILILDDVLAELDL 258 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367 ++N L V SQ F++ T F+ S +++ + + Sbjct: 259 TRQNLLLNSVGK-DSQCFISATHLDKFNQSFLGSSQMIHL 297 >gi|254491212|ref|ZP_05104393.1| DNA replication and repair protein RecF [Methylophaga thiooxidans DMS010] gi|224463725|gb|EEF79993.1| DNA replication and repair protein RecF [Methylophaga thiooxydans DMS010] Length = 325 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 131/321 (40%), Gaps = 16/321 (4%) Query: 52 PGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111 GR FR + + + + FAR I ++ + + S +++N+ ++ Sbjct: 1 MGRSFRSRALKHLVKKQQQR-LTVFAR---SMDQTPIGLQYDLQ---SGLLIRLNNAPLK 53 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 + +L HL + ++ + + F RRR +D VF ++ +++ ++ RN Sbjct: 54 RLSDLAAHLPLQFIPANCHQFFELGPKYRRRMVDWGVFHVEHSFNFHWQSYKKALQQRNA 113 Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 + + Y + + + + + G+KI R + L + ++ S Sbjct: 114 AIRK-YKPCNEIALWDTHLIKHGMKITEFRQGYLQQLVKEFLPLFRQLCPELETASFV-- 170 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 ++ Q + + ++A L + + D T G H +D + D S G+ Sbjct: 171 --LRYQQGWNK-ETDFADYLRENIERDRALGYTRSGAHAADWSLKIDDGD-PYEMLSRGQ 226 Query: 292 QKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 QK+ + + +A +L++ +LL+D++S+ LD +N + + + Q F++ T Sbjct: 227 QKLFFLALSMAQIKLLAAQKEITNSVLLIDDLSSELDWHHQNTVIETLRTLPVQAFISST 286 Query: 351 DKSVFDSLN-ETAKFMRISNH 370 + + L + K + + Sbjct: 287 NDDLSQLLKADNEKKFHVKHG 307 >gi|88807865|ref|ZP_01123376.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. WH 7805] gi|88787904|gb|EAR19060.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. WH 7805] Length = 345 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 151/342 (44%), Gaps = 17/342 (4%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 +G NG+GK+N+LE++ L R R + AD+ +P + ++ + ++ Sbjct: 1 MIGSNGIGKSNLLESVELLGSLRSHRSSQDADLIHWDAPRALLKASCMD------ETEVE 54 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 LE R + + V+ R +D L LR + G RR +LDR+V + Sbjct: 55 LELRRRGGRQARRNGKVLQRQLD-LIGPLRCVGFSALDLHLVRGEPALRRSWLDRVVLQL 113 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFD-----SSWCSSIEAQMAELGVKINIARVEMIN 206 +P + + + RL+R R++ G + + S + QMA + +I+ R + Sbjct: 114 EPIYAELIGRYNRLLRQRSQFWRRGGGNNTFEHQALLDSFDNQMALVCTRIHRRRRRALL 173 Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 L L + + + H +L L + +++ + ++L R + Sbjct: 174 RLEPLAAAWQSRLSQGHEQLELRYSPGSVLEGEEAEEPWRLAIEQQLHRQRGEEERLGSC 233 Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 +GPHR ++ + + + GS+G+Q+ +++ + LA L+ G P+LLLD++ A Sbjct: 234 RVGPHRDEIDM-LLNGTVARRFGSSGQQRTLVLALKLAELELVGELCGHPPLLLLDDVLA 292 Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFM 365 LD ++ AL V D Q ++ T F+ + ++ + Sbjct: 293 ELDPQRQLALLEAVGDT-HQCLVSATHLDAFEGEWRQRSQIL 333 >gi|167508533|gb|ABZ81473.1| recombination protein F [Mycobacterium avium subsp. avium] gi|167508535|gb|ABZ81474.1| recombination protein F [Mycobacterium avium subsp. silvaticum] Length = 289 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%) Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + A + R G+ + V + ++ LE R+ + ++N +R E+ Sbjct: 1 RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174 LR P + G ERRR+LD + P D+++++R R LL Sbjct: 57 LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116 Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226 D ++++AE G ++ AR++++N L+ + + Q + Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176 Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L A +Y L R + L+GPHR DL + ++ Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGMCLVGPHRDDLELWLGER- 235 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280 >gi|167508529|gb|ABZ81471.1| recombination protein F [Mycobacterium avium subsp. hominissuis] Length = 289 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 21/286 (7%) Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + A + R G+ + V + ++ LE R+ + ++N +R E+ Sbjct: 1 RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174 LR P + G ERRR+LD + P D+++++R R LL Sbjct: 57 LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116 Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226 D ++++AE G ++ AR++++N L+ + + Q + Sbjct: 117 SGARHRGDRGALETLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176 Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L A +Y L D R + L+GPHR DL + ++ Sbjct: 177 GYRSSLGAAAAAEVNAGDRDYLEAALLAGLADRRDAELERGMCLVGPHRDDLELWLGEQ- 235 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280 >gi|167508537|gb|ABZ81475.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis] Length = 289 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%) Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + A + R G+ + V + ++ LE R+ + ++N +R E+ Sbjct: 1 RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174 LR P + G ERRR+LD + P D+++++R R LL Sbjct: 57 LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116 Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226 D ++++AE G ++ AR++++N L+ + + Q + Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176 Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L A +Y L R + L+GPHR DL + ++ Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQ- 235 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 236 VAKGFASHGESWSLALSLRLAAFELL-RADESDPVLLLDDVFAELD 280 >gi|167508525|gb|ABZ81469.1| recombination protein F [Mycobacterium avium subsp. hominissuis] Length = 289 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%) Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + A + R G+ + V + ++ LE R+ + ++N +R E+ Sbjct: 1 RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174 LR P + G ERRR+LD + P D+++++R R LL Sbjct: 57 LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116 Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226 D ++++AE G ++ AR++++N L+ + + Q + Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176 Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L A +Y L R + L+GPHR DL + ++ Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQ- 235 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280 >gi|282889709|ref|ZP_06298248.1| hypothetical protein pah_c004o056 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500283|gb|EFB42563.1| hypothetical protein pah_c004o056 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 236 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 7/240 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y + F + G N +GKT ILEAI FL GR FR + D+ Sbjct: 1 MFLHTLHLHQFRSYREAKFTFSPSINLICGPNAIGKTTILEAIHFLMTGRSFRTSQINDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G+ F +E I KL+ + R + +N L Sbjct: 61 IQKGTSYF-----SIEASFIKQGIEQKLKIFYNGKERKIVLNQTPYYSFTHLLGMFYGVC 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + P + G + RR FLD + DP + ++ F R MR RN LL + + Sbjct: 116 MSPDDSALIKGAPLMRRSFLDLQLAQSDPLYVHKLTRFTRAMRQRNYLLK--GKNLATIE 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 S E +MA + R + L + ++ + KL + S LK Sbjct: 174 SWEYEMAHAASYLTFKREVLAAQLHQNGQQIYEQLSAGREKLGVVYKTTAPRSASEEILK 233 >gi|167508539|gb|ABZ81476.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis] Length = 289 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%) Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + A + R G+ + V + ++ LE R+ + ++N +R E+ Sbjct: 1 RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174 LR P + G ERRR+LD + P D+++++R R LL Sbjct: 57 LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116 Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226 D ++++AE G ++ AR++++N L+ + + Q + Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176 Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L A +Y L R + L+GPHR DL + ++ Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQ- 235 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 236 VAKGFASHGESWSLALSLRLAAFELL-RADESDPVLLLDDVFAELD 280 >gi|167508527|gb|ABZ81470.1| recombination protein F [Mycobacterium avium subsp. hominissuis] Length = 289 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 61/286 (21%), Positives = 110/286 (38%), Gaps = 21/286 (7%) Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + A + R G+ + V + ++ LE R+ + ++N +R E+ Sbjct: 1 RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174 LR P + G ERRR+LD + P D+++++R R LL Sbjct: 57 LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116 Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226 D ++++AE G ++ AR++++N L+ + + Q + Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176 Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L +Y L R + L+GPHR DL + ++ Sbjct: 177 GYRSSLGVAASAEVNDGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQ- 235 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280 >gi|167508541|gb|ABZ81477.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis] gi|167508543|gb|ABZ81478.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis] Length = 289 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 21/286 (7%) Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + A + R G+ + V + ++ LE R+ + ++N + +R E+ Sbjct: 1 RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRLPVRSTREV 56 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174 LR P + G ERRR+LD + P D+++++R R LL Sbjct: 57 LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116 Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226 D ++++AE G ++ AR++++N L+ + + Q + Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176 Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L A +Y L R + L+GPHR DL + ++ Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQ- 235 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 236 VAKGFASHGESWSLALSLRLAAFELL-RADESDPVLLLDDVFAELD 280 >gi|123969312|ref|YP_001010170.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. AS9601] gi|123199422|gb|ABM71063.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. AS9601] Length = 297 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 128/280 (45%), Gaps = 11/280 (3%) Query: 97 DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 + + + +N+ +++ E+ ++R + I RR ++D++V ++P + Sbjct: 20 RKGPKRIYVNETILKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRIWIDKVVSQLEPVYL 79 Query: 157 RRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 + F R+++ R+ F S S + QM+ + +I R + + + Sbjct: 80 DLISRFNRILKQRSHFWRSESFLKTQSSDIVESFDIQMSIISTRIFRRRRRALLKIKPYV 139 Query: 213 MEYVQKENFPHIKLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 + + ++ + + ++ + ++ ++L + R +++++ + GP Sbjct: 140 EYWHNHLSKSKEQIDINYLSGIQNISPEEEEEEVISKKIVEQLLNQRSIEALTGKCNFGP 199 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR D+ + ++ +GS+G+Q+ ++ + +A L++ T PIL+LD++ A LD Sbjct: 200 HRDDVEFLINNVSVR-KYGSSGQQRTFILALKMAELDLLTKTLNVPPILILDDVLAELDL 258 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367 ++N L V SQ F++ T F+ S +++ + + Sbjct: 259 TRQNLLLNSVGK-DSQCFISATHLDKFNQSFVGSSQMIHL 297 >gi|167508521|gb|ABZ81467.1| recombination protein F [Mycobacterium avium subsp. hominissuis] Length = 289 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%) Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + A + R G+ + V + ++ LE R+ + ++N +R E+ Sbjct: 1 RVGTDAPLIRAGADRTVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174 LR P + G ERRR+LD + P D+++++R R LL Sbjct: 57 LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116 Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226 D ++++AE G ++ AR++++N L+ + + Q + Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176 Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L A +Y L R + L+GPHR DL + ++ Sbjct: 177 GYRSSLGAAAAAEVNAGDRDYLEAALLAGLAARRYAELERGVCLVGPHRDDLELWLGEQ- 235 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + S GE + + + LA L+ P+LLLD++ A LD Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280 >gi|291520352|emb|CBK75573.1| hypothetical protein CIY_30620 [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 104/235 (44%), Gaps = 13/235 (5%) Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW---CSSIEAQMAELGVKINIA 200 +D + ID + + ++ + + RN LL E + S + Q+ G KI Sbjct: 1 MDAELCQIDKIYLSDLTNYNKALNQRNALLKEIIYKPELKETLSIWDEQLINYGKKIITR 60 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 R + IN ++ ++ + K + D +D + + + +L ++ D Sbjct: 61 RQKFINDINIIVKDIHSKITNGKENI------DVSYDPNIEDIF--FLDELVKNKEKDLR 112 Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320 +T +GPHR D+ + I GS G+Q+ + + L+ +L+ +T PILLLD Sbjct: 113 FCQTSVGPHRDDIKITVDGIDIR-KFGSQGQQRTCALSLKLSEIKLVEDTINDKPILLLD 171 Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 ++ + LD+++++ L + D + I TG D+ V + +++N I Sbjct: 172 DVLSELDKNRQSDLLDNLLDTQTIITCTGIDEFVKNRFKLN-TVYKVTNGSIDLI 225 >gi|313621667|gb|EFR92455.1| DNA replication and repair protein RecF [Listeria innocua FSL S4-378] Length = 152 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 5/157 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 A++EG ++ LE + + ++N + + + + +L + Sbjct: 61 IMWEKEE-----AKMEGRVVKRGQTVPLELAITQKGKRAKVNHMEQKKLSQYVGNLNVVI 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161 P + G RRRFL+ + + P + + + Sbjct: 116 FAPEDLSLVKGAPGVRRRFLNMEIGQMQPIYLHNLSE 152 >gi|317472422|ref|ZP_07931747.1| DNA replication and repair protein RecF [Anaerostipes sp. 3_2_56FAA] gi|316900142|gb|EFV22131.1| DNA replication and repair protein RecF [Anaerostipes sp. 3_2_56FAA] Length = 216 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 15/223 (6%) Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSS---IEAQMAELGVKINIARVEMINALSSL 211 + ++ + R+M RN LL + + + + Q+ + G ++ R + I L+ + Sbjct: 2 YLHQLSSYNRVMAQRNNLLKQLAYQRELLDTLDSWDLQLVKYGSEVIRYRQKFIEDLNEI 61 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 I E + K+ L +D E+ L R++D T GPHR Sbjct: 62 IREIHKNLTGKKEKIVLKYDYSVNYD--------EFLTVLQRKREIDLKYASTGAGPHRD 113 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 D+ I GS G+Q+ + + LA L+ TG PILLLD++ + LD ++ Sbjct: 114 DIEFLVNGIDIR-KFGSQGQQRTAALSLKLAQIELVKRQTGETPILLLDDVLSELDSSRK 172 Query: 332 NALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNHQAL 373 N L + DI Q +T T F +S + K ++ + + + Sbjct: 173 NYLLDSIKDI--QTLITCTGLEEFINSHLQIDKMFQVKSGKIV 213 >gi|124023971|ref|YP_001018278.1| recombination protein F [Prochlorococcus marinus str. MIT 9303] gi|123964257|gb|ABM79013.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9303] Length = 352 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 75/344 (21%), Positives = 143/344 (41%), Gaps = 17/344 (4%) Query: 31 IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90 + +G NG+GK+N+LEA+ L R R +S D+ + + + Sbjct: 7 LVIGPNGIGKSNLLEAVELLGSLRSHRASSDQDLIHWEEQRALLRAI----ADDTEKLEL 62 Query: 91 KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150 +L + R + N + +L LR + G RR++LDR+V Sbjct: 63 ELRRQGGR---QARRNGKTLTRQLDLIGPLRCVGFSALDLNLVRGEPALRRQWLDRVVQQ 119 Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYF-----DSSWCSSIEAQMAELGVKINIARVEMI 205 ++P + + F +L+R R++L + S + + QMA + +I+ R + Sbjct: 120 LEPIYSDLISRFNKLLRQRSQLWRQWRHIPIQERDSLLDAFDVQMALVSTRIHRRRSRAL 179 Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMSRR 263 L L + + + +L L + +++ + +L D R + Sbjct: 180 ARLEPLAARWQETLSKQKERLRLDYQPGSQLEGEEAEEPWRLAIETQLLDQRSEEERLGS 239 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 IGPHR ++ + D + GS G+Q+ V++ + LA L+ G P+LLLD++ Sbjct: 240 CRIGPHRDEVRLLLND-SEARRFGSAGQQRTVVLALKLAELELVGELCGEPPLLLLDDVL 298 Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMR 366 A LD ++ L V + Q ++ T F D + ++ + Sbjct: 299 AELDPGRQLLLLEAVGEK-HQCLVSATHLEGFQDEWQQRSQIIE 341 >gi|126697102|ref|YP_001091988.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9301] gi|126544145|gb|ABO18387.1| putative DNA repair and genetic recombination protein RecF [Prochlorococcus marinus str. MIT 9301] Length = 265 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 120/266 (45%), Gaps = 11/266 (4%) Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 + E+ ++R + I RR ++D++V ++P + + F RL++ R+ Sbjct: 2 KKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYLDLISRFNRLLKQRS 61 Query: 171 RLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 F + S + QM+ + +I R + + + + + ++ Sbjct: 62 HFWRSESFLKTQSTDIVESFDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSQEQI 121 Query: 227 SLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 + + ++ + ++ A +L + R +++++ + GPHR D+ + ++ Sbjct: 122 DINYLSGIQNISPEEEEEEVISKKIADQLLNQRSIEALTGKCNFGPHRDDIEFLINNVSV 181 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 +GS+G+Q+ ++ + +A L++ T PIL+LD++ A LD ++N L V Sbjct: 182 R-KYGSSGQQRTFILALKMAELDLLNKTLNIPPILILDDVLAELDLTRQNLLLNSVGK-D 239 Query: 343 SQIFMTGTDKSVFD-SLNETAKFMRI 367 SQ F++ T F+ S +++ + + Sbjct: 240 SQCFISATHLDKFNQSFIGSSQMIHL 265 >gi|95929988|ref|ZP_01312728.1| Recombinational DNA repair ATPase (RecF pathway)-like [Desulfuromonas acetoxidans DSM 684] gi|95133957|gb|EAT15616.1| Recombinational DNA repair ATPase (RecF pathway)-like [Desulfuromonas acetoxidans DSM 684] Length = 331 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 66/354 (18%), Positives = 140/354 (39%), Gaps = 33/354 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYADVT 65 I+ + + FR + L + + + I G NG GKT+++E++ S R + D+ Sbjct: 2 IEKIKLQNFRCFKELEINLNKK-NIIYGLNGSGKTSLVESLYLCSNYRTLSPKTKNNDLI 60 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + S + + +SI + + ++ V+ K ++ + Sbjct: 61 KFNSENAEIFI----NTKNKLRLSIS-------KNKKIYLDGFESDVLS-FVKSIKCVFF 108 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 + IF RR++ D+++F +D + + + +++R RN + Sbjct: 109 LSDEIFIFFSKPSSRRKYFDQLIFNLDSDYLLLVQKYIKILRNRNIQCKKNKVLE--LDI 166 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ +I+ + + L+ + L K + S K+ Sbjct: 167 WTEYLKDINNRISEKKKIYVENLTKEFKKV------------SNDLLGKKVEFSIEIDKK 214 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 EY + + + + RTL G H D + Y D ++ S G++K+ L I L+H Sbjct: 215 EYFPGIEN---KEIENGRTLFGHHLEDYSL-YIDGVNLNSYSSNGQKKLFLFLIKLSHLS 270 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 L S + L++D++ + LD N++ ++ I Q+ +T DK N Sbjct: 271 L-SEFYSYNQALIIDDLESELDNITINSILDYLSKINKQVIITNIDKLNISGFN 323 >gi|218683066|ref|ZP_03530667.1| recombination protein F [Rhizobium etli CIAT 894] Length = 166 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 78/162 (48%), Positives = 111/162 (68%) Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 I E + FP L L+GF+DG+F + L+++YA L + R D+ + RTL GPHR+ Sbjct: 4 IEETHESSPFPSASLQLSGFMDGQFSRPSVDLEDDYAAMLAESRYRDAGAGRTLDGPHRA 63 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 DLIV + +KA+ STGEQK +LVG+ LAHARL+ N TG APILLLDEI+AHLDE++R Sbjct: 64 DLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLLDEIAAHLDENRR 123 Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 ALF ++ +G Q FMTGTD+S+F +L + A+ +++ + Sbjct: 124 AALFDLIDGLGGQAFMTGTDRSMFSALGDRAQVFTVADGKVF 165 >gi|15835874|ref|NP_300398.1| ATPase [Chlamydophila pneumoniae J138] gi|8978713|dbj|BAA98549.1| RecF-ABC superfamily ATPase [Chlamydophila pneumoniae J138] Length = 207 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 10/177 (5%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +KI L + FRN++ L + + GKTN+LEA+ LS GR FR Sbjct: 1 MPMFMKICSLKLKNFRNHSDLEISLAPKLNY-----AQGKTNLLEALYVLSLGRSFRTQH 55 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 D GS FF +E + L D+ + + N + I+ + +L + Sbjct: 56 LTDTITFGSSHFF-----LETQFEKDHLPQALSIYTDKQGKKICYNQLPIKTLSQLIGKV 110 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 I + SG +RR FL+ ++ D + + + R ++ RN LL Sbjct: 111 PIVLFSSKDRLLISGAPADRRLFLNLLLSQCDNHYTLCLSYYHRALQQRNALLKSKQ 167 >gi|206895150|ref|YP_002247528.1| RecF/RecN/SMC N domain, putative [Coprothermobacter proteolyticus DSM 5265] gi|206737767|gb|ACI16845.1| RecF/RecN/SMC N domain, putative [Coprothermobacter proteolyticus DSM 5265] Length = 342 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 73/371 (19%), Positives = 148/371 (39%), Gaps = 32/371 (8%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +++ + + FRN + + T+ +G+N GKT++LE++ +S GR FR + D+ Sbjct: 3 RVRSIKLYNFRNLLNQEIEIPDGLTVLMGENMQGKTSLLESLFIVSTGRSFRTRNIGDIV 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV-DELNKHLRISW 124 R G V+G + +S++ R L +N I L ++ + Sbjct: 63 RWGENQA-QIELSVDGANVVFSVSLE------PKARSLLLNGERISSFESPLAG--KVLY 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + S S RR F DR++ D + R + +L+ RN +L+ G+++ Sbjct: 114 YSDEYLDLVSTPSGTRRLF-DRLLELSDRENMRLAAQYRKLVSERNSMLSSGFYNEPLDE 172 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ ++ K R + + + + FP + KF +K Sbjct: 173 VLSDRIDKISQKWREKRQAFLQLVQASL-----NLRFPQV---FDSSYSFKFSVETSDIK 224 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ + + TL G R +++D +K ++ S G K++L +F+ A Sbjct: 225 ---------NLSLEMLKKTTLFGFQRDKILLDVNNKEVSTV-ASRGFLKILLTFVFVRTA 274 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 LI G +LL+D+ +A++DE + ++ + I T L Sbjct: 275 ELIHEKQG-YVLLLMDDFNANIDELHWKKVLELLPERH--IIAATTKTWEKADLGRPYSI 331 Query: 365 MRISNHQALCI 375 + + I Sbjct: 332 LACEQGRVFPI 342 >gi|257462456|ref|ZP_05626868.1| RECF protein [Fusobacterium sp. D12] gi|317060113|ref|ZP_07924598.1| DNA replication and repair protein recF [Fusobacterium sp. D12] gi|313685789|gb|EFS22624.1| DNA replication and repair protein recF [Fusobacterium sp. D12] Length = 248 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 106/254 (41%), Gaps = 8/254 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + + RN + ++ F A +F G NG GKT+ILEAI F G FR +++ Sbjct: 1 MRVLSIQCNHIRNLKNQKISFCAPIQVFYGKNGQGKTSILEAIYFAGTGLSFRTRHTSEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S F + +++ +E + E ++ + + Sbjct: 61 ITY-TEDTLSCFLEYQDQFSEKSLAVSIENDKKFFFFLGK-----KISQMEFYGNVNMIF 114 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +P + +G RR F+DR + D + ++ F L++ RN+ L E +++ + Sbjct: 115 YIPEDVMLINGSPSLRRLFIDREISQTDSFYLHQLKKFSHLLKIRNKYLKEKLYENEEYA 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--SFCA 242 E + E G + R + I +S+ + + Q KL + ++ S Sbjct: 175 IYEKEFVECGSYLIEQRKKYIQEISNFVEKIYQNLFDSEKKLKIFYKSCFNLEKVNSLSE 234 Query: 243 LKEEYAKKLFDGRK 256 ++E + K++ R+ Sbjct: 235 IQEAFWKEITKKRE 248 >gi|291288760|ref|YP_003505576.1| Recombinational DNA repair ATPase (RecF pathway)- like protein [Denitrovibrio acetiphilus DSM 12809] gi|290885920|gb|ADD69620.1| Recombinational DNA repair ATPase (RecF pathway)- like protein [Denitrovibrio acetiphilus DSM 12809] Length = 340 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 78/353 (22%), Positives = 141/353 (39%), Gaps = 25/353 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + I FRN+ F+ GDNG GKT++LE++ L + FR+ + Sbjct: 1 MYTNRVRILNFRNHIDSLYDFE-NINYIEGDNGTGKTSVLESLFVLFNLKSFRQQTVKKA 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R F + ++G + + ET + L+ ++ + E + Sbjct: 60 IRFKQDFFLVSAKCLDG-DFQRTFHYRYETSAE-----LKDDEGKVSGKAEYLSMHPVIC 113 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P ++ S +RRRF+DR+ F ID H R+ D +L + L + + ++ Sbjct: 114 YSPEYGQVVSDDQDDRRRFIDRLSFQIDRGHFDRLTDLRKLNLMKVSELKKDRLNRAYID 173 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 S+ ++ EL KI+ R ++ + + + F D F F + Sbjct: 174 SVNEKIVELSEKISGTRECTAGQINDHMRQTYAELGF-----------DDGFRLDFRSNV 222 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++ L + + RR L G R D + S G++K ++ + Sbjct: 223 KDKNLLL-----KEIVDRRLLYGSSRDRFY-SVSDGRVYDRFSSFGQKKTFVLITLASGL 276 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 +L+ I LLD+ A LD+ + LF + D +QIF+TG + F S Sbjct: 277 KLLEKNGKNGIITLLDDFEAGLDKSRIERLFHLF-DTSAQIFITGVKNTNFSS 328 >gi|213421125|ref|ZP_03354191.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 216 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 43 ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102 +LEAI L GR FR V R +F R++G E I + + + D VR Sbjct: 1 MLEAIYTLGHGRAFRSLQPGRVIRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR- 58 Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 I+ + EL + + + P + +G RR FLD F + + Sbjct: 59 --IDGTDGHKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNL 116 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 +RL++ RN L + + ++ L +I+ R E +A++ + + Q + P Sbjct: 117 KRLLKQRNAALRQ-VSRYEQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLP 174 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 L+ + + + +YA L + D M T GPH++ Sbjct: 175 EFSLTFSFQRGWEKET-------DYADVLERSFERDRMLTYTAHGPHKA 216 >gi|291278435|ref|YP_003495270.1| hypothetical protein DEFDS_0002 [Deferribacter desulfuricans SSM1] gi|290753137|dbj|BAI79514.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 333 Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 74/355 (20%), Positives = 144/355 (40%), Gaps = 30/355 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I RN L + FD + +G+NG GKT ILE+I + FR + ++ Sbjct: 1 MFLDELKIVNVRNIEHLSIKFDHKRNYIIGENGSGKTTILESIVTSLYRKSFRTSKIEEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 I SP F + + ++ + IN+ I + + H + Sbjct: 61 KSINSP-----FLSISSIFIKNGLNYTFTFNYSDKKKLHLINNKKIDKLLNIISHFPLIV 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + + + + FLD++V D ++ + F +L++ + +L+TE D+ + Sbjct: 116 HSPYYEGLTDKSNRNKLTFLDKIVILADKSYKENLSKFNKLLKHKRKLITESN-DTKLIN 174 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +I ++E+ I R + L+ + +Y E+ I + L Sbjct: 175 TINDLLSEIYELIYKKRKNFLEQLNMRLKDY---ESTKKISIELK--------------- 216 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 K D + ++ L+ + + + +K I S G++K + + I + Sbjct: 217 ---KNKTKDVFLNELALKKILLTQYSQKIYITSENKNIE-NLLSFGQKKELSIFIIYSFL 272 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 ++I I+LLD+ A LDE K + I +D +Q+ +TG D +N Sbjct: 273 KIIEEIIKDGIIILLDDFEAGLDESKVKNFYEIFSD--NQLILTGVDNKYLSGIN 325 >gi|313829192|gb|EFS66906.1| DNA replication and repair protein RecF [Propionibacterium acnes HL063PA2] Length = 204 Score = 165 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 9/199 (4%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ ++ L + +FR+Y + A T F+G NG GKTN++EA+ +LS R ++ Sbjct: 7 RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R+G+ G + + +++E R+ R + R D L LR Sbjct: 67 LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 P+ + G +RR FLD +V PR D+ER+++ RN LL Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185 Query: 176 GYFDSSWCSSIEAQMAELG 194 G + + ++A +G Sbjct: 186 GAEIGAAVDIWDNELATIG 204 >gi|332976001|gb|EGK12872.1| DNA replication and repair protein RecF [Psychrobacter sp. 1501(2011)] Length = 449 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 78/456 (17%), Positives = 153/456 (33%), Gaps = 98/456 (21%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I RN ++ + Q +FVG NG GKT++LE++ LS G+ FR Sbjct: 2 LTQLSIHHLRNLQAVHI-PVGQCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYIS 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 +P + A+ + S+ ++ D S ++++ + V L K L + Sbjct: 61 HHAP-HTTVHAKF-----ASGSSMAIQKAQDASS-IMRLDQQAVYVQSALTKQLPTLLID 113 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW---- 182 PS I S RR+ LD + F + P + + ++RL++ RN LL + S + Sbjct: 114 PSSMDILEIGSGSRRQLLDWITFHVKPGFHPQWLSYQRLLKQRNALLKQSPRLSDYQRKE 173 Query: 183 CSSIEAQMAELGVKINIARVEMI------------------------------------- 205 ++ + +A I R + Sbjct: 174 LAAWDKGLANHAALITHYRQQAFEEWQPLFNDLLKQLLPAYAPFIQLRFSAGYNTEIPLD 233 Query: 206 ----NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 L+ + + + D Q E + + + ++ Sbjct: 234 ELLQQRLAQDCQSGYTRIGCHRADVQVLWVEDEAARQQVNQTSENKRLQSANNEQQEAPL 293 Query: 262 RRTLIGPHRS------------------------------DLIVDYCDKAITIAHGSTGE 291 TL D +V + S GE Sbjct: 294 --TLDSVQTDYPELFNDSVLEDDQTDNGHELDSDQVFEEEDEVVLGNVREQAANILSRGE 351 Query: 292 QKVVLVGIFLAHARLISNTTGFAPI----------LLLDEISAHLDEDKRNALFRIVTDI 341 +K+++ + L+ L++ + +LLD+I+A LDE + L + ++ + Sbjct: 352 KKLLITALRLSQLPLLAGMEANNAVSIGNDEGLPLVLLDDITAELDERALSILLKSLSQL 411 Query: 342 GSQIFMTGTDKSVFDSLN---ETAKFMRISNHQALC 374 Q+F+T D + + AK + + + Sbjct: 412 SCQVFITSLDDDIMTKIQPYWPEAKLFHMKQGKVIQ 447 >gi|153831484|ref|ZP_01984151.1| recF protein [Vibrio cholerae 623-39] gi|148873035|gb|EDL71170.1| recF protein [Vibrio cholerae 623-39] Length = 185 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 2/186 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + + A +G NG GKT++LEAI L GR F+ + + Sbjct: 1 MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 + F E + + R ++I + + +L + L + Sbjct: 61 IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + P + + +RR F+D VF +P F+RL + RN LL Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179 Query: 184 SSIEAQ 189 S + + Sbjct: 180 SYWDQE 185 >gi|332294864|ref|YP_004436787.1| DNA replication and repair protein recF [Thermodesulfobium narugense DSM 14796] gi|332177967|gb|AEE13656.1| DNA replication and repair protein recF [Thermodesulfobium narugense DSM 14796] Length = 323 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 71/351 (20%), Positives = 150/351 (42%), Gaps = 33/351 (9%) Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 L I FRN+ + + +G+N GKTN+LEAI G+ ++ + Sbjct: 3 LEIHHFRNFEHNTFNLSKK-NLIIGENASGKTNLLEAIYLTLRGKTKNNIPNQNLIQFSR 61 Query: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 S A + I I + + + L+IND + +L ++ ++ ++ Sbjct: 62 ES-----ALIRNTVYGKRIEIMM----NNKNKILKINDKKLNSSIKLWQYFKVFYINLFD 112 Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 + S +R+FLD ++ I+P + D + L +N +L D S + + Sbjct: 113 SLLLSQEPKNKRKFLDEIIININPEKIKLYKDLKILNTQKNYVLKN-KTDKELIKSYDIK 171 Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + +L +I+ R E++N + + +++E+ + KF +S + K Sbjct: 172 LTQLSQEISNLREEVLNNVILNTKKLLKEES-----------IQIKFYKSLES------K 214 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 ++ + +++ ++R +I P R + V + I + STGE K + + LA + Sbjct: 215 EIKNKEIIEAKTKRNIINPSRDNFSVKI--RNIDSSFLSTGEIKKFSLALHLAKISIFKE 272 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 + L DEI++ LD+ + L + + I + +T T + ++ ++ Sbjct: 273 H---NCVSLFDEINSFLDKANLDILLKWLQKIDGYVIVTSTSELDLENFDK 320 >gi|148651821|ref|YP_001278914.1| DNA replication and repair protein RecF [Psychrobacter sp. PRwf-1] gi|148570905|gb|ABQ92964.1| DNA replication and repair protein RecF [Psychrobacter sp. PRwf-1] Length = 459 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 84/462 (18%), Positives = 164/462 (35%), Gaps = 105/462 (22%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I + RN S+ + Q +FVG NG GKT++LE++ LS G+ FR Sbjct: 2 LTQLSIHQLRNLHSVNIKVG-QCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYIS 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 + G S+ ++ D S L+++ + V L K L + Sbjct: 61 HHAAHATVHAKFANGS------SMAIQKAQDAST-ILRLDQQTVYVQSALAKQLPTLLID 113 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182 PS + S RR+ LD + F + P + + ++RL++ RN +L + + Sbjct: 114 PSSMDVLEIGSSSRRQLLDWITFHVKPGFHAQWLAYQRLLKQRNTILRQSGYLSDYQRQE 173 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQS 239 ++ + +A I R E L + +++ + P I+L + + Sbjct: 174 LAAWDKGLANHAALITHYRHEAFEEWQPLFNQLIEQLLPDYAPFIQLRFSAGYNTDL-PL 232 Query: 240 FCALKEEYAKKLFDGRKM--------------DSMSRRTLI----------------GPH 269 L++ A+ G D+ +R+T+ Sbjct: 233 DELLQQRLAQDFQTGYTRVGCHRADIQVLWLEDAQARQTVQQAAETSGMAQTAAHSNIHS 292 Query: 270 RSDLIV---------DYCDKAITIAHG-------------STGEQKVVLVGIFLAHARLI 307 +D+ + D + A+ S GE+K+++ + L+ L+ Sbjct: 293 HADIKLSTDLVDNIEDMNNWEDETAYALTGNVREQAANVLSRGEKKLLITALRLSQLPLL 352 Query: 308 SNTTGFA----------------------------------PILLLDEISAHLDEDKRNA 333 S P++LLD+I+A LDE + Sbjct: 353 STKLSTKLSLTESAAVTDTVIGSNSASEDQPYPSALSDAILPVVLLDDITAELDERALSI 412 Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSLNE---TAKFMRISNHQA 372 L + ++++ QIF+T D + + + A+ + Sbjct: 413 LLKTLSELSCQIFITSLDGDIMPQIKQYWPQAQRFHVKQGHI 454 >gi|213865136|ref|ZP_03387255.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 156 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 4/160 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R +F R++G E I + + + D VR I+ + EL + + Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 + P + +G RR FLD F + + +R Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKR 156 >gi|87300931|ref|ZP_01083773.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. WH 5701] gi|87284802|gb|EAQ76754.1| putative DNA repair and genetic recombination protein RecF [Synechococcus sp. WH 5701] Length = 342 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 71/344 (20%), Positives = 142/344 (41%), Gaps = 20/344 (5%) Query: 47 ISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGME--------GLADISIKLETRDDR 98 + L R R + D+ R G +G L ++LE R Sbjct: 1 MELLGSLRSHRSSHDRDLIRHGQSRALVRGWCGDGHSPGAGAPAPVLDQQELELEVRRQG 60 Query: 99 SVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158 + + + R +D L LR + G RR++LDR+V ++P + Sbjct: 61 GRQARRNGRSLERQLD-LVGPLRCVGFSALDLELVRGEPALRRQWLDRVVLQLEPVYGEL 119 Query: 159 MIDFERLMRGRNRLLTEGYFDS-----SWCSSIEAQMAELGVKINIARVEMINALSSLIM 213 + + RL+R R++LL G S + + Q+A +G +++ R + L L Sbjct: 120 LARYGRLLRQRSQLLRRGLSQGEQQLHSLLDAFDLQIALIGTRLHRRRRRALARLQPLAA 179 Query: 214 EYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 + ++ + +L L + + ++ +E ++L R + +GPHR Sbjct: 180 AWQERLSGGREQLELRYQAGSQLEGEEAEAPWREALLEQLRRQRPEERRLGACQVGPHRD 239 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 ++ + ++ GS G+Q+ +++ + LA L+ G P+LLLD++ A LD ++ Sbjct: 240 EVAMLLGEEP-ARRFGSAGQQRTLVLALKLAELELVQQLWGEPPLLLLDDVLAELDPKRQ 298 Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSL--NETAKFMRISNHQAL 373 L +V G Q ++ T + F + ++ +RI + + Sbjct: 299 ELLLEVV-GTGHQCLVSATHLTSFSTAWQGGDSQVVRICRGELM 341 >gi|291532568|emb|CBL05681.1| hypothetical protein MHY_05980 [Megamonas hypermegale ART12/1] Length = 194 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 5/192 (2%) Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238 + + Q+A+ I R+ I LS L + + + L++ + ++ Sbjct: 1 MLDTWDEQIAKTAAFIVEKRLRSIEKLSKLAQKIHYEISQKMEILNIRYNIHNYKNEALN 60 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 SF L Y + L R D T IGPHR D+ D ++ + GS G+Q+ ++ Sbjct: 61 SFDDLFNFYIQALSKYRDNDIYRGSTSIGPHRDDIDFFINDISLK-SFGSQGQQRSSVLS 119 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 + LA + TG PILLLD++ + LD +R+ L ++ D Q +T TD ++F+S Sbjct: 120 LKLAELEFLKLETGEYPILLLDDVMSELDTRRRDNLLSLLQDNNVQTLITATDINLFNSH 179 Query: 359 NETAKFMRISNH 370 + KF ++ Sbjct: 180 PKN-KFFKVEKG 190 >gi|226326918|ref|ZP_03802436.1| hypothetical protein PROPEN_00778 [Proteus penneri ATCC 35198] gi|225204755|gb|EEG87109.1| hypothetical protein PROPEN_00778 [Proteus penneri ATCC 35198] Length = 164 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 1/163 (0%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I FRN L VG NG GKT+ILEAI L GR FR + V Sbjct: 1 MILSRLLIRHFRNIEQADLPLADGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSSQANRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +F R+ G+ + ++D ++I+ + EL K L + Sbjct: 61 IQHDENAFI-LHGRLSGLNEESRGYAIGLSKDREGNSTVRIDGSDGHKIAELAKLLPMQL 119 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 + P + +G RR F+D F +PR R M+ F+ + Sbjct: 120 ITPEGFTLLNGGPKYRRAFIDWGCFHNEPRFFRCMVGFKTCFK 162 >gi|218458186|ref|ZP_03498277.1| recombination protein F [Rhizobium etli Kim 5] Length = 152 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 94/146 (64%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYA++ L D +H + G+NG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVCLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +ET ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGTAGGFSIFAALDGMEGEVEIGTGVETGEETTTRRLRINGTAAKTADELTDHL 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDR 146 R+ WL P R + RFLDR Sbjct: 121 RLLWLTPGDGRALYRRLVRPPRFLDR 146 >gi|229100793|ref|ZP_04231612.1| DNA replication and repair protein recF [Bacillus cereus Rock3-28] gi|228682622|gb|EEL36680.1| DNA replication and repair protein recF [Bacillus cereus Rock3-28] Length = 183 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 5/180 (2%) Query: 198 NIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255 R + ++ L + + +++ +D +KE Y + + Sbjct: 1 MQKRFDFLHLLQEWAAPIHRGISRGLEELEIIYKPSVDVSESMDLSKIKEVYYESFQSVK 60 Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315 + + TLIGPHR DL K + + GS G+Q+ + + LA LI + P Sbjct: 61 QREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALSLKLAEIELIYSEVKEYP 119 Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQALC 374 ILLLD++ + LD+ +++ L + Q F+T T + + AK + ++N C Sbjct: 120 ILLLDDVLSELDDYRQSHLLNTIQG-RVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDC 178 >gi|1790873|gb|AAB41128.1| RecF [Clostridium acetobutylicum ATCC 824] Length = 205 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 8/207 (3%) Query: 168 GRNRLLTEGYF-DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 RN +L F ++ S + Q+++ G + +R++ +N L+ ++ Sbjct: 2 QRNIMLRNKKFLNNDMISVYDEQLSKFGSSLIESRIKYLNKLNEKGKIIHSDITKGKEEI 61 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 T K ++ + EE D K D T +GPHR D + + + Sbjct: 62 EFTYLTHVKGREN---ISEELFSLFKDSYKRDVEKGNTSVGPHRDDFSIKI-NGIDARSF 117 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 GS G+Q+ ++ I A ++I + P+LLLD++ + LDE ++ + + G Q Sbjct: 118 GSQGQQRTSVLTIKFASIQIIKEISSETPVLLLDDVLSELDESRQEYILNSLE--GIQTL 175 Query: 347 MTGTDKSVFDS-LNETAKFMRISNHQA 372 +T T + L RI N + Sbjct: 176 ITCTGIGDIEKYLKNDFNVFRIDNGRI 202 >gi|213857449|ref|ZP_03384420.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 188 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 10/193 (5%) Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + ++ L +I+ R E +A++ + + Q + P L+ + + + Sbjct: 3 EQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET-- 59 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 +YA L + D M T GPH++D + D A S G+ K+++ + Sbjct: 60 -----DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALR 113 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLN 359 LA ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D + Sbjct: 114 LAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSD 173 Query: 360 ETAKFMRISNHQA 372 E +K + + Sbjct: 174 ENSKMFTVEKGKI 186 >gi|89512208|gb|ABD74000.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis] Length = 155 Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 4/159 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L + +FR++A L T+F+G NG GKTN+LEA+ + S R + A + Sbjct: 1 VYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALRYSSTLGSHRVGTDAPL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G+ + V + ++ LE R+ + ++N +R E+ LR Sbjct: 61 IRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVL 116 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 P + G ERRR+LD + P D++ Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 155 >gi|23014791|ref|ZP_00054591.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Magnetospirillum magnetotacticum MS-1] Length = 174 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 5/150 (3%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + +R ++ L++++FR Y +LRL DA+ + G NG GKTNILEA+SFL PGRG RRA Sbjct: 11 LASRPAVRRLSLADFRCYGTLRLETDARPVVLTGPNGAGKTNILEALSFLVPGRGLRRAG 70 Query: 61 YADVTRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 D+TR G + S ++ A ++G G +I E +R R ++I+ + D L Sbjct: 71 AGDITRHGLPAGSPWAVAASLDGPAGRVEIGTGREAGHER--RSVRIDGKPAKPGD-LAG 127 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMV 148 + WL P+MDR+F + RRRFLDR+ Sbjct: 128 LVSALWLTPAMDRLFIEGASGRRRFLDRLF 157 >gi|309799252|ref|ZP_07693500.1| DNA replication and repair protein RecF [Streptococcus infantis SK1302] gi|308117097|gb|EFO54525.1| DNA replication and repair protein RecF [Streptococcus infantis SK1302] Length = 164 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 4/161 (2%) Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 E + +LS+ F L E + L R D + T +GPHR D Sbjct: 6 REKHFDISNQLEELSICYQPSVNF-TDKEHLSESFYTALQKSRSRDLFKKNTGVGPHRDD 64 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 +I + + GS G+ + +++ I LA L+ + T +PILLLD++ + LD ++ Sbjct: 65 MIFLING--MDASFGSQGQHRSLVLSIKLAEIELMESITKESPILLLDDVMSELDNTRQL 122 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 L ++ Q F+T T +L +T ++N Q + Sbjct: 123 KLLETISQ-NIQTFITTTSLEHLQNLPDTLSLFTVNNGQIV 162 >gi|218682258|ref|ZP_03529859.1| recombination protein F [Rhizobium etli CIAT 894] Length = 123 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 57/123 (46%), Positives = 83/123 (67%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M +++ + L +++FRNYAS L D +H + GDNG GKTN++EA+S LSPGRG RRA+ Sbjct: 1 MPHKVSLSRLKLTDFRNYASAALTLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 Y D+TR+G+ FS FA ++GMEG +I +ET ++ + R L+IN + DEL HL Sbjct: 61 YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETGEESTARRLRINGTPAKTADELTDHL 120 Query: 121 RIS 123 R+ Sbjct: 121 RLL 123 >gi|317472421|ref|ZP_07931746.1| DNA replication and repair protein RecF [Anaerostipes sp. 3_2_56FAA] gi|316900141|gb|EFV22130.1| DNA replication and repair protein RecF [Anaerostipes sp. 3_2_56FAA] Length = 130 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 4/130 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + +RNY L + F + I GDN GKTNILEA+ + + R + ++ Sbjct: 1 MYIQSLELKNYRNYDRLIIEFSSGTNILYGDNAQGKTNILEAVYLGATTKSHRGSKDKEI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G + R+ M+ I + + R+ + I+ + I+ +L + + + Sbjct: 61 IRFGENE---SHIRIHLMKQDIGHQIDMHLKKSRT-KGAAIDRIPIKRSSDLLGFVPVIF 116 Query: 125 LVPSMDRIFS 134 P I Sbjct: 117 FSPEDLSIIK 126 >gi|327398177|ref|YP_004339046.1| SMC domain-containing protein [Hippea maritima DSM 10411] gi|327180806|gb|AEA32987.1| SMC domain protein [Hippea maritima DSM 10411] Length = 326 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 73/352 (20%), Positives = 150/352 (42%), Gaps = 44/352 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + I+ FRN+ L + FD + I G NG GKTN++EA+ G F+ + V Sbjct: 1 MFIKNIIITNFRNFNLLEVKFD-KINIIKGKNGTGKTNLIEAVYLTLNGHPFKN-NLK-V 57 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + A ++ + + D + ++++ ++RVVD +++ Sbjct: 58 LKKELEKPTILNAIIDKH--------TIFIKIDDDKKYIKLDSKLVRVVDLKKTFACLNY 109 Query: 125 LVPSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + S D +FS +DR + + D ++I++++ R + L + Sbjct: 110 SINSFISFRSKDYLFS--------LVDRGISSYDHSIIDKLIEYKKTNRLKKELFSSPKP 161 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D + + + ++ + +I++ R I L + + ++L GK++ Sbjct: 162 DYNMLNFLNDKIKSIVDEISLKRDGFILKLKNDVENCFCSFFGKKLELIYEI---GKYND 218 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 S + + R L G + L + +K + + S GE+K+ L+ Sbjct: 219 SV--------------FEKEKQKNRVLFGFKKDSLKIILNNKDL-FLYSSVGEKKISLLC 263 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 I L+ A++ N++G PILL+D++ LD + F I+ + +Q +T Sbjct: 264 IVLSIAKMY-NSSGVEPILLIDDLEGDLDPQVQKRAFDIIKTLPNQSIITTL 314 >gi|37289461|gb|AAQ90928.1| DNA replication and repair protein [Bacillus sp. AH 721] Length = 156 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F R++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGRIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289397|gb|AAQ90896.1| DNA replication and repair protein [Bacillus sp. AH 1270] gi|37289399|gb|AAQ90897.1| DNA replication and repair protein [Bacillus sp. AH 1271] Length = 156 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289337|gb|AAQ90866.1| DNA replication and repair protein [Bacillus cereus ATCC 14579] gi|37289341|gb|AAQ90868.1| DNA replication and repair protein [Bacillus cereus ATCC 4342] gi|37289343|gb|AAQ90869.1| DNA replication and repair protein [Bacillus thuringiensis] gi|37289457|gb|AAQ90926.1| DNA replication and repair protein [Bacillus sp. AH 716] gi|37289459|gb|AAQ90927.1| DNA replication and repair protein [Bacillus sp. AH 718] gi|37289463|gb|AAQ90929.1| DNA replication and repair protein [Bacillus sp. AH 726] gi|37289469|gb|AAQ90932.1| DNA replication and repair protein [Bacillus sp. AH 811] gi|37289473|gb|AAQ90934.1| DNA replication and repair protein [Bacillus sp. AH 889] gi|37289481|gb|AAQ90938.1| DNA replication and repair protein [Bacillus sp. AH 1293] gi|37289483|gb|AAQ90939.1| DNA replication and repair protein [Bacillus sp. AH 1294] gi|57233287|gb|AAW48230.1| DNA replication and repair protein [Bacillus cereus] gi|156073530|gb|ABU46123.1| replication and repair protein [Bacillus cereus] gi|156073540|gb|ABU46128.1| replication and repair protein [Bacillus cereus] Length = 156 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289331|gb|AAQ90863.1| DNA replication and repair protein [Bacillus sp. AH 1127] gi|37289335|gb|AAQ90865.1| DNA replication and repair protein [Bacillus sp. AH 1135] gi|37289339|gb|AAQ90867.1| DNA replication and repair protein [Bacillus cereus] gi|37289345|gb|AAQ90870.1| DNA replication and repair protein [Bacillus sp. AH 728] gi|37289347|gb|AAQ90871.1| DNA replication and repair protein [Bacillus cereus ATCC 10987] gi|37289351|gb|AAQ90873.1| DNA replication and repair protein [Bacillus sp. AH 812] gi|37289357|gb|AAQ90876.1| DNA replication and repair protein [Bacillus sp. AH 817] gi|37289361|gb|AAQ90878.1| DNA replication and repair protein [Bacillus sp. AH 819] gi|37289365|gb|AAQ90880.1| DNA replication and repair protein [Bacillus sp. AH 823] gi|37289367|gb|AAQ90881.1| DNA replication and repair protein [Bacillus sp. AH 824] gi|37289369|gb|AAQ90882.1| DNA replication and repair protein [Bacillus sp. AH 825] gi|37289371|gb|AAQ90883.1| DNA replication and repair protein [Bacillus sp. AH 826] gi|37289373|gb|AAQ90884.1| DNA replication and repair protein [Bacillus sp. AH 827] gi|37289375|gb|AAQ90885.1| DNA replication and repair protein [Bacillus sp. AH 828] gi|37289377|gb|AAQ90886.1| DNA replication and repair protein [Bacillus sp. AH 829] gi|37289379|gb|AAQ90887.1| DNA replication and repair protein [Bacillus sp. AH 831] gi|37289381|gb|AAQ90888.1| DNA replication and repair protein [Bacillus thuringiensis] gi|37289387|gb|AAQ90891.1| DNA replication and repair protein [Bacillus sp. AH 1123] gi|37289405|gb|AAQ90900.1| DNA replication and repair protein [Bacillus cereus] gi|37289407|gb|AAQ90901.1| DNA replication and repair protein [Bacillus sp. AH 267] gi|37289471|gb|AAQ90933.1| DNA replication and repair protein [Bacillus sp. AH 830] gi|57233271|gb|AAW48222.1| DNA replication and repair protein [Bacillus cereus NC7401] gi|57233273|gb|AAW48223.1| DNA replication and repair protein [Bacillus cereus] gi|57233275|gb|AAW48224.1| DNA replication and repair protein [Bacillus cereus] gi|57233277|gb|AAW48225.1| DNA replication and repair protein [Bacillus cereus] gi|57233279|gb|AAW48226.1| DNA replication and repair protein [Bacillus cereus] gi|57233281|gb|AAW48227.1| DNA replication and repair protein [Bacillus cereus] gi|57233283|gb|AAW48228.1| DNA replication and repair protein [Bacillus cereus] gi|57233285|gb|AAW48229.1| DNA replication and repair protein [Bacillus cereus] gi|156073500|gb|ABU46108.1| replication and repair protein [Bacillus cereus] gi|156073502|gb|ABU46109.1| replication and repair protein [Bacillus cereus] gi|156073504|gb|ABU46110.1| replication and repair protein [Bacillus cereus] gi|156073506|gb|ABU46111.1| replication and repair protein [Bacillus cereus] gi|156073508|gb|ABU46112.1| replication and repair protein [Bacillus cereus] gi|156073510|gb|ABU46113.1| replication and repair protein [Bacillus thuringiensis] gi|156073514|gb|ABU46115.1| replication and repair protein [Bacillus thuringiensis] gi|156073516|gb|ABU46116.1| replication and repair protein [Bacillus thuringiensis] gi|156073518|gb|ABU46117.1| replication and repair protein [Bacillus thuringiensis] gi|156073522|gb|ABU46119.1| replication and repair protein [Bacillus thuringiensis] gi|156073524|gb|ABU46120.1| replication and repair protein [Bacillus cereus] gi|156073532|gb|ABU46124.1| replication and repair protein [Bacillus cereus] gi|156073534|gb|ABU46125.1| replication and repair protein [Bacillus cereus] gi|156073536|gb|ABU46126.1| replication and repair protein [Bacillus cereus] gi|156073538|gb|ABU46127.1| replication and repair protein [Bacillus cereus] Length = 156 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289385|gb|AAQ90890.1| DNA replication and repair protein [Bacillus thuringiensis] Length = 156 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 4/155 (2%) Query: 76 FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG 135 F +++G + S+ LE + + ++N + + + + + + P + G Sbjct: 2 FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKG 61 Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQMA 191 RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 62 SPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQLI 121 Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 122 EHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289389|gb|AAQ90892.1| DNA replication and repair protein [Bacillus sp. AH 1129] Length = 156 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGQIKGKLQKRNNSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289353|gb|AAQ90874.1| DNA replication and repair protein [Bacillus sp. AH 813] gi|37289355|gb|AAQ90875.1| DNA replication and repair protein [Bacillus sp. AH 816] gi|37289359|gb|AAQ90877.1| DNA replication and repair protein [Bacillus sp. AH 818] gi|37289363|gb|AAQ90879.1| DNA replication and repair protein [Bacillus sp. AH 820] gi|37289383|gb|AAQ90889.1| DNA replication and repair protein [Bacillus anthracis] gi|37289467|gb|AAQ90931.1| DNA replication and repair protein [Bacillus anthracis] gi|37289475|gb|AAQ90935.1| DNA replication and repair protein [Bacillus anthracis] gi|37289477|gb|AAQ90936.1| DNA replication and repair protein [Bacillus anthracis] gi|37289479|gb|AAQ90937.1| DNA replication and repair protein [Bacillus anthracis] gi|156073494|gb|ABU46105.1| replication and repair protein [Bacillus anthracis] gi|156073496|gb|ABU46106.1| replication and repair protein [Bacillus anthracis] gi|156073498|gb|ABU46107.1| replication and repair protein [Bacillus anthracis] gi|156073512|gb|ABU46114.1| replication and repair protein [Bacillus thuringiensis] gi|156073520|gb|ABU46118.1| replication and repair protein [Bacillus thuringiensis] gi|156073526|gb|ABU46121.1| replication and repair protein [Bacillus cereus] gi|156073528|gb|ABU46122.1| replication and repair protein [Bacillus cereus] Length = 156 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289333|gb|AAQ90864.1| DNA replication and repair protein [Bacillus sp. AH 1131] Length = 156 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +++G S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGQIKGKLQKRSSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289415|gb|AAQ90905.1| DNA replication and repair protein [Bacillus sp. AH 519] gi|37289417|gb|AAQ90906.1| DNA replication and repair protein [Bacillus sp. AH 536] gi|37289419|gb|AAQ90907.1| DNA replication and repair protein [Bacillus sp. AH 542] gi|37289425|gb|AAQ90910.1| DNA replication and repair protein [Bacillus sp. AH 553] gi|37289427|gb|AAQ90911.1| DNA replication and repair protein [Bacillus sp. AH 572] gi|37289465|gb|AAQ90930.1| DNA replication and repair protein [Bacillus sp. AH 727] Length = 156 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289393|gb|AAQ90894.1| DNA replication and repair protein [Bacillus weihenstephanensis] gi|37289409|gb|AAQ90902.1| DNA replication and repair protein [Bacillus sp. AH 403] gi|37289437|gb|AAQ90916.1| DNA replication and repair protein [Bacillus sp. AH 641] gi|37289441|gb|AAQ90918.1| DNA replication and repair protein [Bacillus sp. AH 650] gi|37289455|gb|AAQ90925.1| DNA replication and repair protein [Bacillus sp. AH 685] Length = 156 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 + ++G + SI LE + + ++N + + + + + + P + Sbjct: 1 DYGNIKGRLQRRNSSISLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289391|gb|AAQ90893.1| DNA replication and repair protein [Bacillus sp. AH 1132] Length = 156 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN L+ + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNSLVKKMPGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289421|gb|AAQ90908.1| DNA replication and repair protein [Bacillus sp. AH 546] Length = 156 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 4/155 (2%) Query: 76 FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG 135 F +++G + S+ LE + + ++N + + + + + + P + G Sbjct: 2 FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKG 61 Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQMA 191 RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 62 SPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQLI 121 Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 122 EHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289411|gb|AAQ90903.1| DNA replication and repair protein [Bacillus sp. AH 407] gi|37289423|gb|AAQ90909.1| DNA replication and repair protein [Bacillus sp. AH 547] gi|37289435|gb|AAQ90915.1| DNA replication and repair protein [Bacillus sp. AH 632] gi|37289439|gb|AAQ90917.1| DNA replication and repair protein [Bacillus sp. AH 645] gi|37289443|gb|AAQ90919.1| DNA replication and repair protein [Bacillus sp. AH 663] gi|37289445|gb|AAQ90920.1| DNA replication and repair protein [Bacillus sp. AH 664] gi|37289447|gb|AAQ90921.1| DNA replication and repair protein [Bacillus sp. AH 675] gi|37289449|gb|AAQ90922.1| DNA replication and repair protein [Bacillus sp. AH 676] gi|37289451|gb|AAQ90923.1| DNA replication and repair protein [Bacillus sp. AH 678] gi|37289453|gb|AAQ90924.1| DNA replication and repair protein [Bacillus sp. AH 681] Length = 156 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 + ++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DYGNIKGRLQRRNSSVSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289429|gb|AAQ90912.1| DNA replication and repair protein [Bacillus sp. AH 607] Length = 156 Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R + ++ L + + +L Sbjct: 121 IEHGAKILQKRFDFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289401|gb|AAQ90898.1| DNA replication and repair protein [Bacillus sp. AH 1272] gi|37289403|gb|AAQ90899.1| DNA replication and repair protein [Bacillus sp. AH 1273] Length = 156 Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 + +++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DYGQIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289395|gb|AAQ90895.1| DNA replication and repair protein [Bacillus sp. AH 1247] Length = 156 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R + ++ L + + +L Sbjct: 121 IEHGAKILQKRFDFLHLLQEWAAPIHRGISRGLEEL 156 >gi|153831514|ref|ZP_01984181.1| DNA replication and repair protein RecF [Vibrio cholerae 623-39] gi|148873003|gb|EDL71138.1| DNA replication and repair protein RecF [Vibrio cholerae 623-39] Length = 154 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 9/157 (5%) Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274 + + P + L + + DQ Y L + D T GP+++DL Sbjct: 1 QLCRTFLPEFDIDLKYYRGWEKDQP-------YQSILEKNFERDQQLGYTFSGPNKADLR 53 Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 + + S G+ K+++ + +A + ++ TG I L+D+ ++ LD +R L Sbjct: 54 IKVNATPVEDVL-SRGQLKLMVCALRVAQGQHLTELTGKQCIYLIDDFASELDSLRRQRL 112 Query: 335 FRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRISNH 370 + G+Q+F++ T+ V D L+E++K +++ Sbjct: 113 ADSLKGTGAQVFVSSITESQVADMLDESSKTFHVAHG 149 >gi|37289413|gb|AAQ90904.1| DNA replication and repair protein [Bacillus sp. AH 408] gi|37289431|gb|AAQ90913.1| DNA replication and repair protein [Bacillus sp. AH 614] gi|37289433|gb|AAQ90914.1| DNA replication and repair protein [Bacillus sp. AH 627] Length = 156 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 + ++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DYGNIKGRLQRRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R E ++ L + + +L Sbjct: 121 IEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEEL 156 >gi|37289349|gb|AAQ90872.1| DNA replication and repair protein [Bacillus sp. AH 810] Length = 156 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 4/156 (2%) Query: 75 TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134 F +++G + S+ LE + + ++N + + + + + + P + Sbjct: 1 DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60 Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190 G RRRFLD + I P + + +++++ RN LL + + + Q+ Sbjct: 61 GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120 Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 E G KI R ++ L + + +L Sbjct: 121 IEHGTKILRKRFGFLHLLQEWAAPIHRGISRGLEEL 156 >gi|226326917|ref|ZP_03802435.1| hypothetical protein PROPEN_00777 [Proteus penneri ATCC 35198] gi|225204754|gb|EEG87108.1| hypothetical protein PROPEN_00777 [Proteus penneri ATCC 35198] Length = 185 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 76/188 (40%), Gaps = 10/188 (5%) Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + ++ L +I+ R + ++ I E + P L ++ + Sbjct: 3 WDKELILLTQQISEWRAQYTEDIAKDIEETC-RLFLPEFSLKVSFQRGWDKET------- 54 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 +Y + L + D M T +G H++DL + + S G+ K+++ + LA Sbjct: 55 DYGELLARQFERDKMLAYTSLGAHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQGE 113 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364 + G + LLD+ ++ LD +R L + +Q+F++ T V D L+ ++ Sbjct: 114 YFTRKNGQRCLYLLDDFASELDASRRQLLAERLKSTQAQVFVSAITQGQVKDMLDVNSRL 173 Query: 365 MRISNHQA 372 + + Sbjct: 174 FSVERGKI 181 >gi|291547607|emb|CBL20715.1| Recombinational DNA repair ATPase (RecF pathway) [Ruminococcus sp. SR1/5] Length = 157 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 17/154 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + ++ FRNY SL + FD I GDN GKTNILEA+ + + + ++ Sbjct: 1 MYIESIRLNNFRNYESLEMNFDQGTNILYGDNAQGKTNILEAVYLAGTSKSHKGSKDREM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123 R + + + M D+S K++ + + + IN + IR EL + + Sbjct: 61 IRFENEE-----SHIRMMVKKGDLSYKIDMHLRKNKAKGVAINGLPIRKARELLGVVNLV 115 Query: 124 WLVPSMDRIFSGLSMER--------RRFLDRMVF 149 + + RI M+R R F+ MVF Sbjct: 116 FF---LRRILILSRMDREREDVFWIRSFVSWMVF 146 >gi|302531359|ref|ZP_07283701.1| recombination protein F [Streptomyces sp. AA4] gi|302440254|gb|EFL12070.1| recombination protein F [Streptomyces sp. AA4] Length = 204 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 20/206 (9%) Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV---QKENFPHIKLSLTGFLDGKFD 237 S + ++ G ++ AR+ +I L+ + ++ P K++ L Sbjct: 2 STLDVWDDHLSVAGAQLLAARLNLIADLAPYTADAYMGVAPDSRP-AKIAYKSSLGEALP 60 Query: 238 QSF----------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 S+ L+E K L D R+ + +L+GPHR +L + +A + Sbjct: 61 PSYGVPGGERAEPEVLRELLLKALADTRRQELERGISLVGPHRDELEL-ILGEAPAKGYA 119 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 S GE + + L L+ G P+LLLD++ A LD +R L + Q+ + Sbjct: 120 SHGESWSFALALRLGSYELLRAEAGE-PVLLLDDVFAELDRKRRARLAEVAAGAE-QVLI 177 Query: 348 T-GTDKSVFDSLNETAKFMRISNHQA 372 T + V L +++ + Sbjct: 178 TAAVAEDVPTEL--AGARFTVADGEV 201 >gi|218659035|ref|ZP_03514965.1| recombination protein F [Rhizobium etli IE4771] Length = 115 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 60/114 (52%), Positives = 83/114 (72%) Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 M +GPHR+DLIV + +KA+ STGEQK +LVG+ LAHARL+ N TG APILLL Sbjct: 1 MRGARWMGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLL 60 Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 DEI+AHLDE +R ALF ++ +G Q FMTGTD+++F +L + A+F +++ + L Sbjct: 61 DEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRTMFSALADRAQFFTVADGKVL 114 >gi|313828985|gb|EFS66699.1| recombination protein F domain protein [Propionibacterium acnes HL063PA2] Length = 226 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 18/207 (8%) Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGFLDGKF 236 + + ++A +G ++ AR++ ++A+ L ++ + T L+G + Sbjct: 16 ATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTIDLEGLW 75 Query: 237 DQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 L + L R + + TL+GP R D+I+ + + Sbjct: 76 SPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMPAK-GY 134 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346 S GE + + + L +L+ + G P+L+LD++ A LD +R+ L V Q+ Sbjct: 135 ASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQAD-QVL 192 Query: 347 MTGTDKSVFDSLNETAKFMRISNHQAL 373 +T S + + + Q L Sbjct: 193 VTAAVASDVPEIL-RGERFDVGGGQVL 218 >gi|229083319|ref|ZP_04215681.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44] gi|228699994|gb|EEL52617.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44] Length = 125 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314 ++ + TLIGPHR DL K + + GS G+Q+ + + LA LI + Sbjct: 2 KQREIFRGTTLIGPHRDDLQFFVNGKNVQV-FGSQGQQRTTALSLKLAEIELIYSEVKEY 60 Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQAL 373 PILLLD++ + LD+ +++ L + Q F+T T + + AK + + + Sbjct: 61 PILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHETLKQAKTIHVKSGTVD 119 Query: 374 C 374 C Sbjct: 120 C 120 >gi|15835875|ref|NP_300399.1| hypothetical protein CPj0340 [Chlamydophila pneumoniae J138] gi|8978714|dbj|BAA98550.1| frame-shift with CPj0339 [Chlamydophila pneumoniae J138] Length = 214 Score = 121 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 4/187 (2%) Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + Q+ + G ++I R LS L E + L L D S A+ E Sbjct: 27 WDEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNNLKEQLALKFKSSLIKNSDISETAVAE 86 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 E+ K+L D T +GPHR D ++ ++ S G++ +L + LA Sbjct: 87 EFHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQMPVS-QFSSEGQKHSLLAILRLAECL 145 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 + + +P++ LD+I A LD ++ L +G Q +T T + L +T+ + Sbjct: 146 YLKQSHHVSPLVCLDDIHAGLDNERVGQLLDPAPTLG-QTLITSTH--MHGELPKTSLVL 202 Query: 366 RISNHQA 372 I N Q Sbjct: 203 SIENAQV 209 >gi|213026882|ref|ZP_03341329.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 134 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + +YA L + D M T GPH++D + D A S G+ K+++ + Sbjct: 1 WEKETDYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALR 59 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLN 359 LA ++ +G + L+D+ ++ LD+ +R L + SQ+F++ D + Sbjct: 60 LAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSD 119 Query: 360 ETAKFMRISNHQA 372 E +K + + Sbjct: 120 ENSKMFTVEKGKI 132 >gi|291532567|emb|CBL05680.1| hypothetical protein MHY_05970 [Megamonas hypermegale ART12/1] Length = 176 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 5/158 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L + +RNY +L L + IF G N GKTNI+EAI F S G R + D+ Sbjct: 1 MKIDLLTLYNYRNYNNLNLKLSSNINIFTGFNAQGKTNIIEAIYFSSLGISHRTRTEGDL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G A + DI+ L+ ++ R + I +L L + Sbjct: 61 ILWGKDE-----ASINVKFSKRDINSILKIILKKNKRKELNFNGEIIKQKDLPGLLTMIL 115 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 P + G + RRRF+D + I + ++ + Sbjct: 116 FSPEDLMLIKGSPLLRRRFIDIELSQISRIYYNELVQY 153 >gi|315170509|gb|EFU14526.1| recombination protein F domain protein [Enterococcus faecalis TX1342] Length = 126 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312 + RK + T +GPHR DL+ + + +GS G+Q+ + I LA L+ + TG Sbjct: 2 NNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTALSIKLAEIDLMHSETG 60 Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNHQ 371 P+LLLD++ + LD +++ L + Q F+T T D L + + Sbjct: 61 EYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKDKLTVEPDIFYVQQGK 119 Query: 372 A 372 Sbjct: 120 I 120 >gi|157060586|gb|ABV03299.1| RecF [Chlamydia trachomatis] gi|157060588|gb|ABV03300.1| RecF [Chlamydia trachomatis] gi|157060590|gb|ABV03301.1| RecF [Chlamydia trachomatis] Length = 121 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 G N GKTN+LEA+ LS GR FR + D R G+ FF +E + ++ Sbjct: 2 IFGLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF-----IEAVFSHKEVFHT 56 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 L + D+ + + + I + EL + I G ERRRFLD ++ Sbjct: 57 LSIQVDKKGKKILFDGAPITKLSELVGLFPVILFSIKDIAIIEGSPSERRRFLDLLLAQA 116 Query: 152 DPRH 155 ++ Sbjct: 117 SDKY 120 >gi|157060562|gb|ABV03287.1| RecF [Chlamydia trachomatis] gi|157060564|gb|ABV03288.1| RecF [Chlamydia trachomatis] gi|157060566|gb|ABV03289.1| RecF [Chlamydia trachomatis] gi|157060568|gb|ABV03290.1| RecF [Chlamydia trachomatis] gi|157060570|gb|ABV03291.1| RecF [Chlamydia trachomatis] gi|157060572|gb|ABV03292.1| RecF [Chlamydia trachomatis] gi|157060574|gb|ABV03293.1| RecF [Chlamydia trachomatis] gi|157060576|gb|ABV03294.1| RecF [Chlamydia trachomatis] gi|157060578|gb|ABV03295.1| RecF [Chlamydia trachomatis] gi|157060580|gb|ABV03296.1| RecF [Chlamydia trachomatis] gi|157060582|gb|ABV03297.1| RecF [Chlamydia trachomatis] gi|157060584|gb|ABV03298.1| RecF [Chlamydia trachomatis] Length = 122 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 G N GKTN+LEA+ LS GR FR + D R G+ FF +E + ++ Sbjct: 2 IFGLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF-----IEAVFSHKEVFHT 56 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 L + D+ + + + I + EL + I G ERRRFLD ++ Sbjct: 57 LSIQVDKKGKKILFDGAPITKLSELVGLFPVILFSIKDIAIIEGSPSERRRFLDLLLAQA 116 Query: 152 DPRH 155 ++ Sbjct: 117 SDKY 120 >gi|330721226|gb|EGG99329.1| DNA recombination and repair protein RecF [gamma proteobacterium IMCC2047] Length = 145 Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 4/144 (2%) Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 ++ F Q + A ++ L G + D T GPHR+DL V Y + S Sbjct: 2 CGIEIDFYQGWRANT-SLSEVLNAGLESDLKRGFTQAGPHRADLRVRYLGQN-AADLLSR 59 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 G+QK+V+ + +A L S +TG I LLD+++A LD+ R L ++++ + Q+F+T Sbjct: 60 GQQKLVICALKIAQGYLFSKSTGRTCIYLLDDLAAELDQVFRERLCKLLSTLDCQLFITS 119 Query: 350 TDKSVFDSLNETA--KFMRISNHQ 371 D+ +F + K + + Sbjct: 120 VDEQLFSRSWPSMDVKVFHVKQGE 143 >gi|1710064|sp|P49997|RECF_AZOVI RecName: Full=DNA replication and repair protein recF gi|790976|emb|CAA60158.1| recF [Azotobacter vinelandii] Length = 364 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 8/169 (4%) Query: 26 DAQHT-IFVGDNGVGKTNILEAISFLSPG--RGFRRASYADVTRIGSPSFFSTFARVEGM 82 A+ G NG GK S S FR + V + P+ + F +V Sbjct: 34 SARVNQYISGPNGSGKRPAYWRRSTCSAWQLSSFRSQRLSPVIQHEQPAC-TVFGQVLWN 92 Query: 83 EGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR 141 +G ++ + R+ ++I+ +R +L + L + + P R+ G RR Sbjct: 93 DGRVRNLGV---ARNRLGELQIRIDGQNVRSAAQLAESLPLQLINPDSFRLLEGAPKVRR 149 Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190 +FLD VF ++ R + +R RN L G D ++ + ++ Sbjct: 150 QFLDWGVFHVEQRFLPAWDRLQTALRQRNSWLRHGRIDPVSQAAWDREL 198 Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + +A L+ I L+D++ + LDE R AL R++ ++ Q+F+T D Sbjct: 266 LKIAQGHLVDRAR-RECIYLVDDLPSELDEQHRRALCRLLEELHCQVFITCVDLEAL 321 >gi|213021784|ref|ZP_03336231.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 106 Score = 109 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 R +F R++G E I + + + D VR + I Sbjct: 61 IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVRIDGTDGHKI 105 >gi|225011183|ref|ZP_03701644.1| DNA replication and repair protein RecF [Flavobacteria bacterium MS024-3C] gi|225004693|gb|EEG42654.1| DNA replication and repair protein RecF [Flavobacteria bacterium MS024-3C] Length = 164 Score = 109 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 10/151 (6%) Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 Q + + +++ L D + T +G H+ Sbjct: 12 FQSQHQAISGGNESVTIDYSSGMDHAP--------LEDLLVQNLSKDRALQYTSVGIHKD 63 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 DL + I GS G+QK L+ + LA I + PILLLD+I LD + Sbjct: 64 DLQFELEGHPIK-KFGSQGQQKSFLIALKLAQFHFIKEKSNTTPILLLDDIFDKLDAQRV 122 Query: 332 NALFRIVTDIG-SQIFMTGTDKSVFDSLNET 361 L +V D QIF++ T +++ +T Sbjct: 123 AQLLGLVNDHAYGQIFISDTHADRTEAVLKT 153 >gi|309804865|ref|ZP_07698927.1| putative recombination protein F [Lactobacillus iners LactinV 09V1-c] gi|309805908|ref|ZP_07699940.1| putative recombination protein F [Lactobacillus iners LactinV 03V1-b] gi|308165804|gb|EFO68025.1| putative recombination protein F [Lactobacillus iners LactinV 09V1-c] gi|308167684|gb|EFO69831.1| putative recombination protein F [Lactobacillus iners LactinV 03V1-b] Length = 117 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 3/115 (2%) Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318 TL+GPHR DL V + +K + S G+Q+ +++ I LA L+ PILL Sbjct: 1 MRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVLSIKLAEIDLMHQILNEYPILL 59 Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAKFMRISNHQA 372 LD++ + LD ++ L + +Q F+T TD S+ + + + RI + Sbjct: 60 LDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQEMIKIPRIFRIVSGTV 113 >gi|319648521|ref|ZP_08002737.1| hypothetical protein HMPREF1012_03776 [Bacillus sp. BT1B_CT2] gi|317389600|gb|EFV70411.1| hypothetical protein HMPREF1012_03776 [Bacillus sp. BT1B_CT2] Length = 85 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 5/84 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + +S +RNY L L F+ + + +G+N GKTN++EAI L+ + R ++ ++ Sbjct: 1 MYIQNITLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADI 88 R +A++EG + Sbjct: 61 IRWDED-----YAKIEGRVIKKTV 79 >gi|283969319|gb|ADB54393.1| DNA replication and repair protein [Leptospira interrogans] Length = 133 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DMTEFGSQGQKRSTVIALKAA 133 >gi|283969279|gb|ADB54374.1| DNA replication and repair protein [Leptospira interrogans serovar Copenhageni] gi|283969311|gb|ADB54389.1| DNA replication and repair protein [Leptospira kirschneri serovar Grippotyphosa] gi|283969313|gb|ADB54390.1| DNA replication and repair protein [Leptospira kirschneri serovar Grippotyphosa] gi|283969315|gb|ADB54391.1| DNA replication and repair protein [Leptospira kirschneri serovar Grippotyphosa] gi|283969335|gb|ADB54401.1| DNA replication and repair protein [Leptospira kirschneri serovar Grippotyphosa] Length = 133 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E+I L+S + K + Sbjct: 1 YNKILKHRNALLKSGNPDVSHLSIWDKKIIEKGIFILNKRKEIILELNSFYKINLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELVY-------KPNVNDQDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIGI-DQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|283969249|gb|ADB54359.1| DNA replication and repair protein [Leptospira interrogans serovar Bratislava] gi|283969255|gb|ADB54362.1| DNA replication and repair protein [Leptospira interrogans serovar Muenchen] gi|283969257|gb|ADB54363.1| DNA replication and repair protein [Leptospira interrogans serovar Muenchen] gi|283969263|gb|ADB54366.1| DNA replication and repair protein [Leptospira interrogans serovar Autumnalis] gi|283969271|gb|ADB54370.1| DNA replication and repair protein [Leptospira interrogans serovar Canicola] gi|283969273|gb|ADB54371.1| DNA replication and repair protein [Leptospira interrogans serovar Canicola] gi|283969275|gb|ADB54372.1| DNA replication and repair protein [Leptospira interrogans serovar Canicola] gi|283969277|gb|ADB54373.1| DNA replication and repair protein [Leptospira interrogans] gi|283969300|gb|ADB54384.1| DNA replication and repair protein [Leptospira interrogans serovar Pomona] gi|283969302|gb|ADB54385.1| DNA replication and repair protein [Leptospira interrogans serovar Pomona] gi|283969321|gb|ADB54394.1| DNA replication and repair protein [Leptospira interrogans] gi|283969325|gb|ADB54396.1| DNA replication and repair protein [Leptospira interrogans] gi|283969351|gb|ADB54409.1| DNA replication and repair protein [Leptospira interrogans serovar Bratislava] Length = 133 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|317499297|ref|ZP_07957570.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium 5_1_63FAA] gi|316893466|gb|EFV15675.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium 5_1_63FAA] Length = 113 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK L + +RNY L + F + + GDN GKTNILE+I + + R ++ Sbjct: 1 MIIKSLELKNYRNYDELSMNFASGTNLLYGDNAQGKTNILESIYLSATTKSHRGNKDREL 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIK 91 + + +G++ D+ +K Sbjct: 61 IKFEENEAHIRIHFEKQGIDHQLDMHLK 88 >gi|312865861|ref|ZP_07726083.1| putative DNA replication and repair protein RecF [Streptococcus downei F0415] gi|311098736|gb|EFQ56958.1| putative DNA replication and repair protein RecF [Streptococcus downei F0415] Length = 94 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + + S G+Q+ +++ + LA LI TG +PILLLD++ + LD ++ L + + Sbjct: 1 MNASFASQGQQRSLILSLKLAEIELIKAITGDSPILLLDDVMSELDNHRQLRLLDGIKE- 59 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 Q F+T T L + K +S Sbjct: 60 NVQTFITTTSLDHLQGLPDDLKIFTVSQGTI 90 >gi|283969253|gb|ADB54361.1| DNA replication and repair protein [Leptospira interrogans serovar Australis] gi|283969304|gb|ADB54386.1| DNA replication and repair protein [Leptospira interrogans serovar Pyrogenes] gi|283969337|gb|ADB54402.1| DNA replication and repair protein [Leptospira kirschneri serovar Grippotyphosa] Length = 133 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|283969308|gb|ADB54388.1| DNA replication and repair protein [Leptospira interrogans serovar Wolffi] Length = 133 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREIVLELNSFYRVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|283969293|gb|ADB54381.1| DNA replication and repair protein [Leptospira interrogans serovar Lai] gi|283969329|gb|ADB54398.1| DNA replication and repair protein [Leptospira interrogans serovar Lai] Length = 133 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNHNLSRDLRLGYTSVGIHRDDLFIG-SDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|283969269|gb|ADB54369.1| DNA replication and repair protein [Leptospira interrogans serovar Bataviae] Length = 133 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNHNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|283969251|gb|ADB54360.1| DNA replication and repair protein [Leptospira interrogans] Length = 133 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKHRNALLKSGNLDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|283969259|gb|ADB54364.1| DNA replication and repair protein [Leptospira interrogans] gi|283969285|gb|ADB54377.1| DNA replication and repair protein [Leptospira interrogans serovar Icterohaemorrhagiae] gi|283969287|gb|ADB54378.1| DNA replication and repair protein [Leptospira interrogans serovar IH CF1] gi|283969289|gb|ADB54379.1| DNA replication and repair protein [Leptospira interrogans] gi|283969291|gb|ADB54380.1| DNA replication and repair protein [Leptospira interrogans serovar Icterohaemorrhagiae] gi|283969296|gb|ADB54382.1| DNA replication and repair protein [Leptospira interrogans] gi|283969323|gb|ADB54395.1| DNA replication and repair protein [Leptospira interrogans] gi|283969327|gb|ADB54397.1| DNA replication and repair protein [Leptospira interrogans serovar Copenhageni] gi|283969331|gb|ADB54399.1| DNA replication and repair protein [Leptospira interrogans] gi|283969333|gb|ADB54400.1| DNA replication and repair protein [Leptospira interrogans] gi|283969339|gb|ADB54403.1| DNA replication and repair protein [Leptospira interrogans] gi|283969341|gb|ADB54404.1| DNA replication and repair protein [Leptospira interrogans] gi|283969345|gb|ADB54406.1| DNA replication and repair protein [Leptospira interrogans] gi|283969347|gb|ADB54407.1| DNA replication and repair protein [Leptospira interrogans] gi|283969349|gb|ADB54408.1| DNA replication and repair protein [Leptospira interrogans] Length = 133 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKHRNALLKSGNLDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|313611868|gb|EFR86327.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL F2-208] Length = 70 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + + FRNY +L L F +F+G+N GKTN+LEA+ L+ + R + D Sbjct: 1 MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60 Query: 65 TRIGSPSF 72 Sbjct: 61 IMWEKEEA 68 >gi|283969343|gb|ADB54405.1| DNA replication and repair protein [Leptospira kirschneri] Length = 133 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + RL+ RN LL G D S S + ++ E G+ I R E+I L+S + K + Sbjct: 1 YNRLLNHRNALLKSGNPDVSHLSIWDKKIIEKGIFILNKRKEIILELNSFYKINLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELVY-------KPNVNDQDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIGI-DQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|283969265|gb|ADB54367.1| DNA replication and repair protein [Leptospira interrogans serovar Autumnalis] Length = 133 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKYRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GRDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|1213060|emb|CAA63915.1| recf [Mycobacterium smegmatis str. MC2 155] Length = 155 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 7/155 (4%) Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 + S+ D +S + L R + L+GPHR DL + D+ Sbjct: 2 RSSVEAIEDAPGPESVEFYEAALLDALARRRDAELERGVCLVGPHRDDLELRLGDQPAK- 60 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 S GE + + + L L+ + G P+LLLD++ A LD +R AL V Q Sbjct: 61 GFASHGESWSMALALRLGAYELLC-SDGVEPVLLLDDVFAELDTSRRRALA-TVAGSAEQ 118 Query: 345 IFMT-GTDKSVFDSLNET---AKFMRISNHQALCI 375 + +T + + + + + + + + Sbjct: 119 VLVTAAVGEDIPEDWDARRVEIRMVEDDGGRVSMV 153 >gi|283969281|gb|ADB54375.1| DNA replication and repair protein [Leptospira interrogans serovar Icterohaemorrhagiae] Length = 133 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKHRNALLESGNLDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|308450490|ref|XP_003088315.1| hypothetical protein CRE_15840 [Caenorhabditis remanei] gi|308248036|gb|EFO91988.1| hypothetical protein CRE_15840 [Caenorhabditis remanei] Length = 160 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 D S + E+ L R + TL+GPHR DL+++ + + S GE Sbjct: 21 DVSRETIAAEFRGALQAVRAQELDRGVTLVGPHRDDLVLELNGLPVK-GYASHGESWSFA 79 Query: 297 VGIFLAHARLIS-NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 + + L A L+ + G P++LLD++ A LD +R+ L V I ++ + Sbjct: 80 LALRLGMAVLLRGESAGGDPVILLDDVFAELDTRRRSKLMSAVQSFEQVIVTAAVEEDIP 139 Query: 356 DSLN 359 + + Sbjct: 140 EGIA 143 >gi|21328235|gb|AAM48482.1| RecF [Listeria monocytogenes] Length = 106 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR D + + + GS G+Q+ + I LA LI TG P+LLLD++ + LD+ Sbjct: 1 HRDDSLFYINGQNV-QDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDD 59 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQA 372 +++ L + Q F+T T S D + A + Sbjct: 60 YRQSHLLGAIEGK-VQTFVTTTSTSGIDHETLKQATTFYVEKGTV 103 >gi|283969306|gb|ADB54387.1| DNA replication and repair protein [Leptospira interrogans serovar Pyrogenes] Length = 133 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + +++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILIHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + + Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIGTNQRD 113 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 IT GS G+++ ++ + A Sbjct: 114 IT-EFGSQGQKRSTVIALKRA 133 >gi|283969298|gb|ADB54383.1| DNA replication and repair protein [Leptospira interrogans] Length = 133 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ N LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKHSNALLKSGNLDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|283969267|gb|ADB54368.1| DNA replication and repair protein [Leptospira interrogans serovar Autumnalis] Length = 133 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 8/140 (5%) Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 2 NKILKYRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSGG 61 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 62 KDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQRD 113 Query: 283 TIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 114 ITEFGSQGQKRSTVIALKAA 133 >gi|283969317|gb|ADB54392.1| DNA replication and repair protein [Leptospira interrogans] Length = 133 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + + + RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNNIPKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|332071496|gb|EGI81990.1| DNA replication and repair recF domain protein [Streptococcus pneumoniae GA41301] Length = 63 Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L++ FRNY ++ F+ + +F+G N GKTN+LEAI FL+ R R + ++ Sbjct: 1 MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60 Query: 65 TRI 67 + Sbjct: 61 IQF 63 >gi|213025877|ref|ZP_03340324.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 123 Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 2/124 (1%) Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 + + + P + +G RR FLD F + + +RL++ RN L + Sbjct: 2 AHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ- 60 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + ++ L +I+ R E +A++ + + Q + P L+ + + Sbjct: 61 VSRYEQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEK 119 Query: 237 DQSF 240 + + Sbjct: 120 ETDY 123 >gi|291520351|emb|CBK75572.1| hypothetical protein CIY_30610 [Butyrivibrio fibrisolvens 16/4] Length = 94 Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + + FRNY SL + FD TI GDN GKTNILEA + + + ++ Sbjct: 1 MIIKSIELENFRNYESLNINFDEHTTILFGDNAQGKTNILEAAYLSGTTKSHKGSRDKEI 60 Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIK 91 + + S T + DI +K Sbjct: 61 IKFDKNESHIKTIISKNDRDYQIDIHLK 88 >gi|283969261|gb|ADB54365.1| DNA replication and repair protein [Leptospira interrogans serovar Autumnalis] Length = 133 Score = 99.6 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++++ RN LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILKYRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 G G+++ ++ + A Sbjct: 113 DITEFGPQGQKRSTVIALKAA 133 >gi|283969283|gb|ADB54376.1| DNA replication and repair protein [Leptospira interrogans serovar Icterohaemorrhagiae] Length = 133 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 8/141 (5%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + +++ R LL G D S S + ++ E G+ I R E++ L+S + K + Sbjct: 1 YNKILIHRTALLKSGNLDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 L L + K ++E+ +KL D T +G HR DL + D+ Sbjct: 61 GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112 Query: 282 ITIAHGSTGEQKVVLVGIFLA 302 GS G+++ ++ + A Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133 >gi|296394|emb|CAA50569.1| RecF [Staphylococcus aureus] Length = 89 Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 +GS G+Q+ + I LA L++ G PILLLD++ + LD+ ++ L + Q Sbjct: 1 YGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQT 59 Query: 346 FMTGTDKSVFD-SLNETAKFMRISNHQAL 373 F+T T D + AK RI+ + + Sbjct: 60 FVTTTSVDGIDHEIMNNAKLYRINQGEII 88 >gi|809744|emb|CAA32896.1| recF protein (1 is 2nd base in codon) [Pseudomonas putida] Length = 134 Score = 96.1 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 9/139 (6%) Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266 AL + + E L+L+ + D+ E + L D T Sbjct: 1 ALKPVFERTLS-ELVELDGLTLSYYRGWDKDR-------ELQEVLASSLLRDQQMGHTQA 52 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 GP R+DL + S G+QK+V+ + +A L+S I L+D++ + L Sbjct: 53 GPQRADLRLRLAGNNAADIL-SRGQQKLVVCALRIAQGHLVSQARRGHCIYLVDDLPSEL 111 Query: 327 DEDKRNALFRIVTDIGSQI 345 D+ R AL R++ ++ Q Sbjct: 112 DDQHRRALCRLLEELRCQC 130 >gi|296537347|ref|ZP_06899213.1| recombination protein F [Roseomonas cervicalis ATCC 49957] gi|296262327|gb|EFH09086.1| recombination protein F [Roseomonas cervicalis ATCC 49957] Length = 126 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 43/97 (44%), Positives = 62/97 (63%) Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 HR+DL + K I STGEQK +LV LA A L+++ GFAP+LLLDE++AHLD Sbjct: 11 HRTDLRLVLLPKQIPAELCSTGEQKALLVSTVLAQAALVASHRGFAPLLLLDEVAAHLDP 70 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365 ++R ALF + + +Q F+TGT+++ F L A+ Sbjct: 71 ERRAALFAALDALPAQCFLTGTEEAPFAPLRGHAQLF 107 >gi|289810862|ref|ZP_06541491.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 68 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 32/68 (47%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60 Query: 65 TRIGSPSF 72 R +F Sbjct: 61 IRHEQEAF 68 >gi|289806572|ref|ZP_06537201.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 103 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 D A S G+ K+++ + LA ++ +G + L+D+ ++ LD+ +R L Sbjct: 6 ADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASR 65 Query: 338 VTDIGSQIFMTGTDKSV-FDSLNETAKFMRISNHQA 372 + SQ+F++ D +E +K + + Sbjct: 66 LKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 101 >gi|157060592|gb|ABV03302.1| RecF [Chlamydia trachomatis] Length = 96 Score = 92.7 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 5/95 (5%) Query: 32 FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 G N GKTN+LEA+ LS GR FR + D R G+ FF +E + ++ Sbjct: 2 IFGLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF-----IEAVFSHKEVFHT 56 Query: 92 LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 L + D+ + + + I + EL + Sbjct: 57 LSIQVDKKGKKILFDGAPITKLSELVGLFPVILFS 91 >gi|325067218|ref|ZP_08125891.1| DNA replication and repair protein RecF [Actinomyces oris K20] Length = 176 Score = 92.7 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 8/162 (4%) Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 I SSL+ E PH + + + D++ AL + + + Sbjct: 18 RAQIAYRSSLLTHEGHPEPDPHDESAWLAGEETLLDET--ALATRLESAMGELHAREIDR 75 Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-----PI 316 L+G HR DL + S GEQ + + + LA ++ P+ Sbjct: 76 GANLVGAHRDDLSLFLTGLP-ARGFASHGEQWSLALALRLASYDMLRTDVDAYGGDGEPV 134 Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358 L+LD++ A LDE +R AL ++V + D V L Sbjct: 135 LILDDVFASLDEQRRRALAQMVAGAQQVLLTAAVDDDVPTEL 176 >gi|45692|emb|CAA32895.1| unnamed protein product [Pseudomonas putida] Length = 99 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ + ++ RN + L+ + I G NG GKT++LEA+ L R FR V Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60 Query: 65 TRIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRC 102 + + + F V+ E G +++ + E + + ++R Sbjct: 61 IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGEFTIRI 98 >gi|325912269|ref|ZP_08174666.1| putative DNA replication and repair protein RecF [Lactobacillus iners UPII 143-D] gi|325475928|gb|EGC79097.1| putative DNA replication and repair protein RecF [Lactobacillus iners UPII 143-D] Length = 105 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 +K + S G+Q+ +++ I LA L+ PILLLD++ + LD ++ L Sbjct: 6 LSNKKSAQEYASQGQQRSIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLN 65 Query: 337 IVTDIGSQIFMTGTD-KSVFDSLNETAKFMRISNHQA 372 + +Q F+T TD S+ + + + RI + Sbjct: 66 YINGK-TQTFITTTDINSISQEMIKIPRIFRIVSGTV 101 >gi|153084|gb|AAA73950.1| homologue; putative [Staphylococcus aureus] Length = 103 Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%) Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 R D+ D +GS G+Q+ + I LA L++ G P D + + LD+ Sbjct: 1 RDDISFDVNGMD-AQTYGSQGQQRTTALSIKLAEIELMNIEVGNIPSYYCD-VLSELDDS 58 Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQAL 373 ++ L + Q F+T T D + AK RI+ + + Sbjct: 59 RQTHLLSTIQHK-VQTFVTTTSVDGIDHEIMNNAKLYRINQGEII 102 >gi|148927260|ref|ZP_01810831.1| DNA recombination/replication protein RecF [candidate division TM7 genomosp. GTL1] gi|147887346|gb|EDK72799.1| DNA recombination/replication protein RecF [candidate division TM7 genomosp. GTL1] Length = 107 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 9 FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68 L + +FR+Y + TI G NG GKTN+LEA+ L+ G FR AS ++ +IG Sbjct: 4 SLRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSFR-ASDQELGQIG 62 Query: 69 SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 ++ AR+ E SI E + ++ V Sbjct: 63 MD-WWRLDARLVANESR---SILFEAEKTTGRKTFILDGVKKATP 103 >gi|325066319|ref|ZP_08124992.1| DNA replication and repair protein RecF [Actinomyces oris K20] Length = 81 Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 38/67 (56%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ +FR+Y SL L + + FVG NG GKTN++EAI +L+ R + + Sbjct: 1 MYVSDLSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTAL 60 Query: 65 TRIGSPS 71 R +P Sbjct: 61 VRRAAPG 67 >gi|326330616|ref|ZP_08196920.1| Smc [Nocardioidaceae bacterium Broad-1] gi|325951457|gb|EGD43493.1| Smc [Nocardioidaceae bacterium Broad-1] Length = 330 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 98/276 (35%), Gaps = 29/276 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKRLTLKGFKSFASATTLELEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111 DV G+ A V D ++ +E + IN R Sbjct: 61 MEDVIFAGTSGRAPLGRAEVSLTIDNTDGALPIEYAEVTISRTMFRNGGSEYAINGSPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I +RR F++ + R E Sbjct: 121 LLDVQDLLSDSGIGREMHVIVGQGQLDTILRATPEDRRGFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS-SLIMEYVQKENFP 222 + +R + I Q+ LG + +AR + + ++ Sbjct: 176 KALRKLDSTQVNLDRLQDLLVEIRRQLKPLGRQAEVARQAQTVQMDVRDAKARIYADDLV 235 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 K L + + + A + E + + +GR+ + Sbjct: 236 TAKTELD--KELADEGALLARRAEVEETIAEGREQE 269 >gi|1388127|gb|AAB02817.1| RecF [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 112 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 5/109 (4%) Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 IGP ++D + S G+ K+++ + LA + + L+D+ ++ Sbjct: 1 IGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQGEYLVAQKERQCLFLIDDFASE 59 Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----ETAKFMRISNH 370 LD KR L + + GSQ+F+T K + + E ++ Sbjct: 60 LDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESEQDSLFQVQQG 108 >gi|254507673|ref|ZP_05119805.1| ATPase [Vibrio parahaemolyticus 16] gi|219549370|gb|EED26363.1| ATPase [Vibrio parahaemolyticus 16] Length = 583 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 138/376 (36%), Gaps = 42/376 (11%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI---------SFLSPGR 54 +KIK +NI FRN+ SL L FD + VG NG GKT +L+AI S L G Sbjct: 92 VKIKEINIENFRNFDSLFLSDFDPNINVIVGTNGAGKTTLLDAIDTSLSWLRNSILKTGG 151 Query: 55 GFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVV 113 S D+ + + + +E I + LE R + N ++ R + Sbjct: 152 SGNYISEKDINLYSDIPYATISSVIEVN---HKIDVPLEISKSREGTAKRRNQLLAHRTI 208 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 E K + + V D +I F++ RN L Sbjct: 209 GEFYKIANEKNPTFNFPLL-----AYYNVMRSYDVNPRDISGHDEVIGFDKFEGYRNSLN 263 Query: 174 TEGYFDS--SWCSSIEAQMAELGVKINIARVEMINA--LSSLIMEYVQ--KENFPHIKLS 227 + F S +W ++ +A ++ A ++ L+ + E ++ E+ + S Sbjct: 264 GKTDFQSFFNWYKRLDDILARRESNVSKA--TVLKELGLTPSLFEKLEILAEHDEETRES 321 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS---MSRRTLIGPHRS---DLIVDYCDKA 281 L D+ L E+YAK+ M+ + + DL+++ + Sbjct: 322 LEVIRSKFPDEVDDILDEDYAKQAKLMVNQAISSFMTGYSNLEVQLEPFVDLLIEKNGRK 381 Query: 282 ITIAHGSTGEQKVVLVGI-----FLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALF 335 I++ S GE K +L I L + N ++L+DE+ HL + + Sbjct: 382 ISVLSLSQGE-KTLLTLIADLTKRLIQLNPSLENPLQGQGVILIDEVDLHLHPKWQRKIA 440 Query: 336 RIVTDI--GSQIFMTG 349 + Q F+T Sbjct: 441 NNLKKTFPNCQFFLTT 456 >gi|269955959|ref|YP_003325748.1| chromosome segregation protein SMC [Xylanimonas cellulosilytica DSM 15894] gi|269304640|gb|ACZ30190.1| chromosome segregation protein SMC [Xylanimonas cellulosilytica DSM 15894] Length = 1203 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 102/278 (36%), Gaps = 28/278 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ R R Sbjct: 1 MHLKTLTLRGFKSFASATTLSFEPGITCVVGPNGSGKSNVVDALAWVMGEQGARSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRS-VRCLQINDVVIR 111 DV G+ ++ +G I + + RS IN R Sbjct: 61 MEDVIFAGTAGRPPLGRAEVSLTIDNTDGALPIDYTEVTISRTLFRSGGSEYAINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + ERR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVVVGQGQLDAVLRASPEERRGFVEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R +++ + + + Q+ LG + AR + + + + Sbjct: 176 KALRKLDQMAGNLARLTDLTAELRRQLGPLGRQAEAARKA--RTFQADLRDAKARLLADD 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + L + D++ +++ ++ D + + Sbjct: 234 LAQLLAQLEAERADEAVLRERQQATEQALDAARAELAR 271 >gi|162451513|ref|YP_001613880.1| hypothetical protein sce3241 [Sorangium cellulosum 'So ce 56'] gi|161162095|emb|CAN93400.1| hypothetical protein sce3241 [Sorangium cellulosum 'So ce 56'] Length = 423 Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 66/373 (17%), Positives = 119/373 (31%), Gaps = 63/373 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L++ +FR + SL L F T VG NG GKT+IL+A++ L + Sbjct: 1 MKITRLSLRDFRGFRSLDLDFSPDVTALVGVNGAGKTSILDALALLLSC-------LVES 53 Query: 65 TRIGSPSFFSTFA---RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 R P + A R+ ++ ++ + + + L+ Sbjct: 54 IRSEEPETIAPSASDVRIGASTAQLSLTAEISVQPTQWSIAKTLPGHPPGAPSALDALHE 113 Query: 122 ISWLVPSMDRIFSGLSMER--------RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 + I G R LD P + ++ + Sbjct: 114 PV--AAAQTTIALGSPFLPLVVYFPTNRSALDIPERIRTPHAFDALSAYDGALE---GGA 168 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + W E + E +++ L LD Sbjct: 169 SNFRGFFEWFRQEEDILNE---------QQVLQILHE------------------DQGLD 201 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 G S + + L G + + RR P R + V+ + +A S GE+ Sbjct: 202 GSSTPSPLPAVRKAIEALLPGARRVRIERR----PQR--MTVELNGTRLDVAQLSDGEKC 255 Query: 294 VVL----VGIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIF 346 ++ + +A A I N ++L+DEI HL + + + + +Q Sbjct: 256 LLAMAGDLARRMALAAPKIENPLDHPAVVLIDEIELHLHPGLQRVILPRLQKVFPRAQFI 315 Query: 347 MTGTDKSVFDSLN 359 +T V SL+ Sbjct: 316 ITTHSPQVLSSLH 328 >gi|13476749|ref|NP_108318.1| overcoming lysogenization defect protein [Mesorhizobium loti MAFF303099] gi|14027510|dbj|BAB53779.1| mlr8165 [Mesorhizobium loti MAFF303099] Length = 608 Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 74/402 (18%), Positives = 135/402 (33%), Gaps = 74/402 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 + I + I FR++A L + T +G+N GKTN+L+A+ + +R Sbjct: 1 MHISKITIRNFRSFAHLDVRIAENTTCIIGENNTGKTNLLQALRLCLDVNLASSYRSLLP 60 Query: 62 ADV---TRIGSPSFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDEL 116 +D+ + PS ++ G + + R + ++V D+L Sbjct: 61 SDIHSAVDLSHPSQVVIAIEIDQWAGKVNEEALVGGWQVAPDRARLIYRFRPKLKVRDDL 120 Query: 117 NKHLRISWLVPSMDRI------FSGLSMERR---------------RFLDRMVFAIDPRH 155 + P I +G R RF D F + H Sbjct: 121 ADET----IEPGDLTIDDYQWEITGGGDPRHDVATVDWDQDIGVGIRFSDLQSFLV--VH 174 Query: 156 RRRMIDFERLMRG-RN----RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210 + D E +R R+ RL+ D + ++ + + I I AL+ Sbjct: 175 LPALRDVESDLRQTRSSPLTRLIAASEIDHAEKDALVQALRDANQTIAE--SPTIEALAE 232 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270 I K + P + G G + SF A+ + L + D + +G + Sbjct: 233 AIDASFTKVSGPAFDM---GVGLGLAEPSFQAIVKALRILLTNAAVTDFDPAQNGLGLNN 289 Query: 271 ---SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + ++Y +K LA I+L +E AHL Sbjct: 290 ILYVSIWIEYFNK-------------------RLAQ------EKSAGQIILFEEPEAHLH 324 Query: 328 EDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 + ALF + + Q +T T + S + + F+ ++N Sbjct: 325 PQLQLALFGALKALPFQSILT-THSTHITSQADLSSFVVLTN 365 >gi|297156893|gb|ADI06605.1| chromosome segregation protein [Streptomyces bingchenggensis BCW-1] Length = 1345 Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 99/294 (33%), Gaps = 43/294 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPTGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 211 LIMEYVQKENFPHIKLSL---TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + E ++ E L T + + Q A EE ++L R D+ Sbjct: 236 TMREALRTEIADEAALKQRKETAEAELRTAQQREAALEEQVRQLAP-RLRDAQQ 288 >gi|50955123|ref|YP_062411.1| chromosome segregation protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951605|gb|AAT89306.1| chromosome segregation protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 1181 Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 29/281 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A F+ T +G NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAQPTTFAFEPGVTCVIGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111 DV G+ + A V +D ++ +E + IN R Sbjct: 61 MEDVIFAGTETRGPLGRAEVHLTIDNSDGALPIEYTEVTISRTLFRNGGSEYAINGQSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + ERR F++ + R E Sbjct: 121 LLDVQELLSDSGLGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGILKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYVQKENFP 222 + +R + + T S + Q+ LG + IAR I A+ + ++ Sbjct: 176 KTLRKLDAMQTNLTRLSDLAGEVRRQLKPLGHQAEIAREAQSIAAIVRDARARLLADDVV 235 Query: 223 HIKLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L G + + + L+E+ +KL +++ Sbjct: 236 GLRRTLDGHVRTEAERHTEQIVLQEQLEQKLLRRTRLEQAQ 276 >gi|296129309|ref|YP_003636559.1| chromosome segregation protein SMC [Cellulomonas flavigena DSM 20109] gi|296021124|gb|ADG74360.1| chromosome segregation protein SMC [Cellulomonas flavigena DSM 20109] Length = 1186 Score = 83.0 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 100/275 (36%), Gaps = 29/275 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKTLTLRGFKSFASATTLSFEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111 DV G+ A V D ++ +E + IN R Sbjct: 61 MEDVIFAGTSGRPPLGRAEVSLTIDNTDGALPIEYSEVTISRTLFRNGGSEYAINGRACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + ERR F++ + R E Sbjct: 121 LLDIQDLLSDSGLGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEYVQKENFP 222 + +R + + + I Q+ LG + +AR ++ A + ++ Sbjct: 176 KALRKLDAMQGNLTRLGDLTAEIRRQLGPLGRQAEVARKAAVVQADLRDSRARLLADDLA 235 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 ++ L + + + +E +L + R Sbjct: 236 QLRARLEQ--EIADESAVRERRELVEGELAEARAR 268 >gi|117928777|ref|YP_873328.1| condensin subunit Smc [Acidothermus cellulolyticus 11B] gi|117649240|gb|ABK53342.1| condensin subunit Smc [Acidothermus cellulolyticus 11B] Length = 1188 Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 98/279 (35%), Gaps = 29/279 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A++++ + R Sbjct: 1 MYLKSLTLRGFKSFASTTTLRFEPGITCVVGPNGSGKSNIVDALAWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111 DV G+ S ++ +G I IN R Sbjct: 61 MEDVIFAGTASRPPLGRAEVVVTIDNSDGALPIEYSEVTLSRIMFRNGGSEYAINGRPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + ++ + ERR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLEEVLHATPEERRGFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + + + Q+ LG + AR + + + + + Sbjct: 176 KALRKLEAMQANLTRLADLTTELRRQLGPLGRQAETARKA--ARIQADLRDARLRLLADD 233 Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + L D + + A ++E + + R ++ Sbjct: 234 LVTLRAELERDIADENAARARRDELEQHVRRLRARETEL 272 >gi|288923593|ref|ZP_06417703.1| chromosome segregation protein SMC [Frankia sp. EUN1f] gi|288345055|gb|EFC79474.1| chromosome segregation protein SMC [Frankia sp. EUN1f] Length = 1256 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 111/279 (39%), Gaps = 29/279 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AI+++ + R + Sbjct: 1 MHLKSLTLRGFKSFASSTTLHLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGT 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 +DV G+P+ + A V AD ++ +E + R + IN R Sbjct: 61 MSDVIFAGTPARPALGRAEVLLTIDNADGALPIEYAEVTVGRLMFRSGESEYTINGTACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + L + +D + +RR F++ + R E Sbjct: 121 LLDIQELMSDSGIGRELHVVVGQGQLDAVLHARPEDRRSFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE-MINALSSLIMEYVQKENFP 222 + +R + + + + Q+ LG + IAR +I A + ++ Sbjct: 176 KALRKLEAMAANLTRLTDLSAELRRQLGPLGRQAEIARKAGVIQASLRDARLRLLADDLA 235 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + S+ D +++ A + L DG++ ++ Sbjct: 236 TARASV--VTDAADEEALRARATRTERVLADGQRREAEL 272 >gi|300723965|ref|YP_003713279.1| hypothetical protein XNC1_3107 [Xenorhabdus nematophila ATCC 19061] gi|297630496|emb|CBJ91161.1| hypothetical protein XNC1_3107 [Xenorhabdus nematophila ATCC 19061] Length = 539 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 119/365 (32%), Gaps = 52/365 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I +NI FR+ + IFVG N GKTN EAI + G + S ++ Sbjct: 2 MMINRVNIKNFRSIECETFECG-KFNIFVGQNNTGKTNFFEAIEWFFNGLP-KNKSISE- 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADIS-IKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 +E L S +K E+ + ++ L+ ND VI L + R Sbjct: 59 VHRNRDINNEISVEIEFTGALYGASNMKNESNKAKIMKLLEGNDKVIVRRTSLTPNKRTI 118 Query: 124 WLV-PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + + ++ +G FL + + ++ + + + Sbjct: 119 IISGNEIKKLPTGFDSALNDFLPKFEYVHTRQYFDEVAKYSA----------KSPVGIML 168 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240 S +E + + E + L + K F + + L+ +FD+ Sbjct: 169 SSVLEEMLEDN-----HQYQEFKDKFEKLFNDENSEVKIAFEKLGNRVQFHLEKQFDECT 223 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI--VDYCDKAITIAHGST---GEQKVV 295 E P DL+ C + S G Q+ + Sbjct: 224 KVSFEVKR-------------------PDFDDLLKNFQTCVDDGVDTYASEKGDGMQRAL 264 Query: 296 LVGIFLAHARL--ISNTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTGT 350 ++ I A+A G + + +DE HL + L + + Q+F+ T Sbjct: 265 MLAIIQAYADYRKDREDAGKSFLFFIDEAELHLHPTAQRKLKNVLLELCEKLDQVFI-NT 323 Query: 351 DKSVF 355 SVF Sbjct: 324 HSSVF 328 >gi|284992407|ref|YP_003410961.1| chromosome segregation protein SMC [Geodermatophilus obscurus DSM 43160] gi|284065652|gb|ADB76590.1| chromosome segregation protein SMC [Geodermatophilus obscurus DSM 43160] Length = 1188 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + + L + F+++AS L + T VG NG GK+N+++AI+++ + R Sbjct: 1 MHLSSLTLKGFKSFASATTLRLEPGITAVVGPNGSGKSNVVDAIAWVLGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ +G I + + R RS +IN +R Sbjct: 61 MEDVIFAGTAGRPALGRAEVTLTIDNSDGALPIDYTEVSITRRMYRSGESEYEINGDKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + SG +RR F++ + R E Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDAVLSGRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KALRKLDAMQANLDRLADLTAELRRQLKPLGRQAEVARRA 215 >gi|158312997|ref|YP_001505505.1| chromosome segregation protein SMC [Frankia sp. EAN1pec] gi|158108402|gb|ABW10599.1| chromosome segregation protein SMC [Frankia sp. EAN1pec] Length = 1263 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 105/279 (37%), Gaps = 29/279 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AI+++ + R + Sbjct: 1 MHLKSLTLRGFKSFASSTTLHLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGT 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 +DV G+PS ++ +G I T R IN R Sbjct: 61 MSDVIFAGTPSRPALGRAEVLLTIDNTDGALPIEYSEVTVGRLMFRSGESEYTINGTTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + L + +D + +RR F++ + R E Sbjct: 121 LLDIQELMSDSGIGRELHVIVGQGQLDAVLHARPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE-MINALSSLIMEYVQKENFP 222 + +R + + + + Q+ LG + IAR +I A + ++ Sbjct: 176 KALRKLEAMAANLTRLTDLSAELRRQLGPLGRQAEIARKAGVIQAALRDSRLRLLADDLA 235 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + ++ D + + + K L DG++ ++ Sbjct: 236 TARCAIAS--DAADEDALRLRVAQTEKALADGQRREAEL 272 >gi|213648786|ref|ZP_03378839.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 63 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 26/50 (52%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 + + L I +FRN + L VG NG GKT++LEAI L GR Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGR 50 >gi|89897383|ref|YP_520870.1| hypothetical protein DSY4637 [Desulfitobacterium hafniense Y51] gi|89336831|dbj|BAE86426.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 708 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 63/389 (16%), Positives = 140/389 (35%), Gaps = 63/389 (16%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 R+ I L I +R + + + F + +G+N GKT IL+A+ F+ ++ Sbjct: 38 RMYISRLKIQNYRCFQDVEIEFSEGLNVIIGENNCGKTTILKALQCF-----FKGSNT-- 90 Query: 64 VTRIGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKH 119 GS F + + E +I+ L + + + + + ++V Sbjct: 91 ----GSAMGIDDFNKGITIGEKPPEITFVLTIQSSKHEKAQDKAVVASWLTKLVSPWEAT 146 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFA-IDPRHRRRMIDFERLMR----------- 167 L + +P + ++R D D R+ ++ ER ++ Sbjct: 147 LTYKFFLPE--------ADQKRYVADIRCIQDDDDRNSKKWAVLERHLKKYTPRIYGGNY 198 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 + Y D C ++A + ++ K+ R ++ + + ++ E + + Sbjct: 199 ESKNRADQEYLDKFHCEVLDA-LRDVESKMFTGRNALLKQVLNFFVDSDLIEKEETERET 257 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR--------TLIGPHRSDLIVDYCD 279 L + F+ + +L +++ + + + TL G ++ Sbjct: 258 LQVQRNQTFESTSSSLVANMIERVSVSKIFELTEKTGAAVGGQPTLGGQLDESDVLSVLK 317 Query: 280 KAITIAHGST--------GEQKVVLVGIFLAHARLI-SNTTGFA----PILLLDEISAHL 326 I G G ++ + + L+ +++ S+ G P+LL++E AHL Sbjct: 318 LMIKKETGIEVPIVNNGMGYNNLIYISLLLSKFKMLVSSEMGENAKVFPMLLIEEPEAHL 377 Query: 327 DEDKRNALFRIVTD------IGSQIFMTG 349 + + R + D I QIF+T Sbjct: 378 HPALQYSFLRFLKDEMDKQEISRQIFITT 406 >gi|282889710|ref|ZP_06298249.1| hypothetical protein pah_c004o057 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500284|gb|EFB42564.1| hypothetical protein pah_c004o057 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 107 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 6/103 (5%) Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320 TLIGPH+ DL + DK S G+Q+ + + LA + T P++L+D Sbjct: 1 MGCTLIGPHKDDLNLCLDDKEARY-FASEGQQRSFVAALKLAEWSSLKAVTEENPLMLID 59 Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGT----DKSVFDSLN 359 + D ++ L + + + Q+F+T T D SL Sbjct: 60 DAGMSWDAFRKAKLLKYIEGL-HQVFLTTTQDLPDDEAPASLK 101 >gi|332670006|ref|YP_004453014.1| chromosome segregation protein SMC [Cellulomonas fimi ATCC 484] gi|332339044|gb|AEE45627.1| chromosome segregation protein SMC [Cellulomonas fimi ATCC 484] Length = 1186 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 95/273 (34%), Gaps = 27/273 (9%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKTLTLRGFKSFASATTLTFEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I T IN R Sbjct: 61 MEDVIFAGTAGRPPLGRAEVALTIDNTDGALPIEYTEVTISRTLFRNGGSEYAINGQGCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + ERR F++ + R E Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDAVLRATPEERRGFVEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + I Q+ LG + +AR + S L + Sbjct: 176 KALRKLDAMQANLTRLGDLTGEIRRQLGPLGRQAEVARKAAVVQ-SDLRDARARLLADDL 234 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 +L+ T + + + A + E L R Sbjct: 235 AQLTATLEQEIADETALLARRAEVEGALAQHRD 267 >gi|302537172|ref|ZP_07289514.1| predicted protein [Streptomyces sp. C] gi|302446067|gb|EFL17883.1| predicted protein [Streptomyces sp. C] Length = 667 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 105/282 (37%), Gaps = 35/282 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109 DV G+ ++ +G I ++ R S QIN Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIDYAEVTITRIMFRGGSSE--YQINGDT 118 Query: 110 IRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161 R++D + + + + +D + RR F++ + R Sbjct: 119 CRLLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPTGRRAFIEEAAGVLKHR-----KR 173 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 E+ +R + + + Q+ LG + +AR + + + + + Sbjct: 174 KEKALRKLDAMQANLARVQDLADELRRQLKPLGRQAAVARRA--AVIQADLRDAKLRLLA 231 Query: 222 PHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMS 261 + ++L G L+ + + + KE + L D + ++ Sbjct: 232 DDL-VALRGALEAEIADEAALKERKEAAERDLADALRREAEL 272 >gi|46200852|ref|ZP_00207873.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Magnetospirillum magnetotacticum MS-1] Length = 83 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/75 (44%), Positives = 47/75 (62%) Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357 I LA R+ + T G AP+LLLDE++AHLDE +R ALF + + Q +MTGTD +F Sbjct: 2 SIVLAQGRVQNQTGGRAPLLLLDEVAAHLDEVRRAALFDELCALRVQSWMTGTDAMLFAG 61 Query: 358 LNETAKFMRISNHQA 372 E A+F R+++ Sbjct: 62 FGERAQFFRVTDATV 76 >gi|294631629|ref|ZP_06710189.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292834962|gb|EFF93311.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 476 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 100/295 (33%), Gaps = 50/295 (16%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + RR F++ + R E Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDSVLHADPAGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDSMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL-FDGRKMDSMSRRT 264 + E +Q E L + A ++E A+ L + R D + R T Sbjct: 236 RLREALQAEIADEAAL----------KERKEAAEQELARALQREARLEDEVRRLT 280 >gi|29829200|ref|NP_823834.1| chromosome segregation protein [Streptomyces avermitilis MA-4680] gi|29606306|dbj|BAC70369.1| putative chromosome segregation protein [Streptomyces avermitilis MA-4680] Length = 1202 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 99/279 (35%), Gaps = 29/279 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + + Q+ LG + +AR + + + + + Sbjct: 176 KALRKLDAMRANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLADD 233 Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + +L + + + + KE +L + +++ Sbjct: 234 LVRLRVALQTEVADEAALKERKEAAEAELKRALQREALL 272 >gi|21223933|ref|NP_629712.1| chromosome associated protein [Streptomyces coelicolor A3(2)] gi|256784967|ref|ZP_05523398.1| chromosome associated protein [Streptomyces lividans TK24] gi|4007736|emb|CAA22420.1| putative chromosome associated protein [Streptomyces coelicolor A3(2)] Length = 1186 Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 51/293 (17%), Positives = 98/293 (33%), Gaps = 49/293 (16%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 + E +Q E L + A ++E K L ++ RR Sbjct: 236 RMREALQAEVADEAAL----------KERKEAAEQELGKALRREADLEDEVRR 278 >gi|296270736|ref|YP_003653368.1| chromosome segregation protein SMC [Thermobispora bispora DSM 43833] gi|296093523|gb|ADG89475.1| chromosome segregation protein SMC [Thermobispora bispora DSM 43833] Length = 1234 Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 104/273 (38%), Gaps = 27/273 (9%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKKLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALAWVMGEHSAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S ++ +G I + + RS + IN R Sbjct: 61 MEDVIFAGTASRPPLGRAEVTLTIDNSDGALPIDYTEVTISRLMFRSGQSEYAINGDPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D++ ERR F++ + R E Sbjct: 121 LLDIQELLSDTGIGREMHVIVGQGQLDQVLHAGPEERRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + + + Q+ LG + IAR + + L ++ Sbjct: 176 KALRKLDAMQANLNRLQDLITELRRQLKPLGRQAEIARKAAVIQ-ADLRDARLRLLADDV 234 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + L + + + A + E +L + ++ Sbjct: 235 VTLREELRREEADEAAVRARRAEVEAQLAESQR 267 >gi|302554413|ref|ZP_07306755.1| chromosome segregation protein SMC [Streptomyces viridochromogenes DSM 40736] gi|302472031|gb|EFL35124.1| chromosome segregation protein SMC [Streptomyces viridochromogenes DSM 40736] Length = 1201 Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 98/291 (33%), Gaps = 44/291 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMIN---- 206 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 L + V E + + + + Q AL E+ ++L + Sbjct: 236 RLRDALKAEVADEAALKERKE-SAEQELRKAQQREALLEDEVRQLTPRLQR 285 >gi|239991066|ref|ZP_04711730.1| putative chromosome segregation protein [Streptomyces roseosporus NRRL 11379] Length = 732 Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 51/324 (15%), Positives = 107/324 (33%), Gaps = 50/324 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMI----- 205 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 206 ---NALSSLI---MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 +AL I E ++++ +L + + + L + ++ Sbjct: 236 TLRDALRDEIADEAELKKRKDVAEAELKTALLREAELEGEVRRLAPRLQRAQQTWYELSQ 295 Query: 260 MSRRTLIGPHRSDLIVDYCDKAIT 283 ++ R +D V +A Sbjct: 296 LAERVRGTISLADARVRSASQAPA 319 >gi|297202630|ref|ZP_06920027.1| chromosome segregation protein SMC [Streptomyces sviceus ATCC 29083] gi|197713205|gb|EDY57239.1| chromosome segregation protein SMC [Streptomyces sviceus ATCC 29083] Length = 1201 Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 98/279 (35%), Gaps = 29/279 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPTGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + + Q+ LG + +AR + + + + + Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLADD 233 Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + +L + + + KE ++L + +++ Sbjct: 234 LVRLRQALQAEVADEAALKERKEAAEQELKKALQREALL 272 >gi|289805654|ref|ZP_06536283.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 117 Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 9/123 (7%) Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 F + + +RL++ RN L + + ++ L +I+ R E +A+ Sbjct: 1 FHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLRPWDKELIPLAEQISTWRAEYSSAI 59 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 + + + Q + P L+ + + + +YA L + D M T GP Sbjct: 60 AQDMADTCQ-QFLPEFSLTFSFQRGWEKET-------DYADVLERSFERDRMLTYTAHGP 111 Query: 269 HRS 271 +++ Sbjct: 112 NKA 114 >gi|326797730|ref|YP_004315549.1| SMC domain protein [Sphingobacterium sp. 21] gi|326548494|gb|ADZ76879.1| SMC domain protein [Sphingobacterium sp. 21] Length = 551 Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 62/361 (17%), Positives = 116/361 (32%), Gaps = 45/361 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI + I FR+ IFVG N GKTN EAI F G G R ++ ++ Sbjct: 1 MKISRIKIENFRSIKETEFTTTD-FNIFVGQNNCGKTNFFEAIEFFFNGLG-RGSNINEL 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +I +++E ++ L N ++ + Sbjct: 59 --------------KYKRDPQNEILVEIEFIGAQNGASLMQNQTNKTKIENALNGSDVVI 104 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + +R+ +++ + DF L Y + Sbjct: 105 FQRTSSI-----PNKRKMYVNGSEVQPGTGFDAALNDF---------LPKFEYISTKQY- 149 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +A +A+ K + + L++++ Q + F L D Q F + Sbjct: 150 -YDA-VAKY-SKTTPIGIMLSGVLNTILQGNQQYQAFQAKFAELFEDDDSAIKQEFVNIG 206 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST-----GEQKVVLVGI 299 L + + + P DL+ + S G Q+ +++ I Sbjct: 207 NSVKIHLEKQFPDTTKVKFEVTPPQFDDLLKSFSTSIDDGVETSAEEKGDGMQRALMLAI 266 Query: 300 FLAHARLIS--NTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTGTDKSV 354 A+A G + + +DE HL + L ++ Q+F+ T SV Sbjct: 267 IQAYADYRKQNEDVGKSFLFFIDEAELHLHPTAQRKLKNVLHALSQETDQVFI-NTHSSV 325 Query: 355 F 355 F Sbjct: 326 F 326 >gi|327200677|pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And Amp-Pnp gi|327200678|pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And Amp-Pnp Length = 359 Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 56/395 (14%), Positives = 142/395 (35%), Gaps = 73/395 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62 +K++ + + FR+++ + F + +G NG GK+++L+AI + R Sbjct: 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI-LVGLYWPLRIKDIKKD 59 Query: 63 DVTRIGS-PSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDVV---------- 109 + T++G+ ++ +G + + + +++ L N+ Sbjct: 60 EFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAI 119 Query: 110 ---IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP--RHRRRMIDFER 164 + + N L ++ R + + R V +D +++ + ++ Sbjct: 120 SAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVV-REVLNLDKFETAYKKLSELKK 178 Query: 165 LMRGR------NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + R + + + + + ++ + +AR ++ + L E + Sbjct: 179 TINNRIKEYGGSGGIKDLEKAKDFTEELIEKVKKYKA---LAREAALSKIGELASEIFAE 235 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 F +GK+ + +E ++ L V + Sbjct: 236 ------------FTEGKYSEVVVRAEE-----------------------NKVRLFVVWE 260 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 K + S GE+ + + LA + ++ G +L+LDE + +LDE++R L I+ Sbjct: 261 GKERPLTFLSGGERIALGLAFRLAMSLYLA---GEISLLILDEPTPYLDEERRRKLITIM 317 Query: 339 T---DIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370 Q+ + D+ + D+ + + + N Sbjct: 318 ERYLKKIPQVILVSHDEELKDA-ADHVIRISLENG 351 >gi|331698518|ref|YP_004334757.1| chromosome segregation protein SMC [Pseudonocardia dioxanivorans CB1190] gi|326953207|gb|AEA26904.1| chromosome segregation protein SMC [Pseudonocardia dioxanivorans CB1190] Length = 1186 Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 103/274 (37%), Gaps = 29/274 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AIS++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRLEPGITCVVGPNGSGKSNVVDAISWVLGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTSGRAPLGRAEVTLTIDNSDGALPIEYSEVSITRRMFRDGAGEYEINGDRAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + +RR +++ + R E Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDGVLQSKPEDRRAYIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFP 222 + +R + + + + + Q+ LG + R + + + + ++ Sbjct: 176 KALRKLDAMQANLTRLTDLTAELRRQLKPLGRQAEIARRAQAVQSELRDARLRLAADDLV 235 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 ++ +L + +Q+ A + E ++L R+ Sbjct: 236 ALRDALA--REEADEQAARARRAEVEEELRVARE 267 >gi|323140853|ref|ZP_08075766.1| RecF/RecN/SMC N-terminal domain protein [Phascolarctobacterium sp. YIT 12067] gi|322414591|gb|EFY05397.1| RecF/RecN/SMC N-terminal domain protein [Phascolarctobacterium sp. YIT 12067] Length = 438 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF----RR 58 ++I+ L + FR Y L + F+ + T+ VG+NG GKT I +A++ R F R+ Sbjct: 1 MQIERLRLKNFRCYDELDIAFEPKLTVIVGENGKGKTAIFDALAIALEPYLRSFDASGRQ 60 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93 + DV R+ P + ++GME + IKLE Sbjct: 61 ITPQDVRRV--PVYKKDMRHIDGMECHYPVEIKLE 93 >gi|46205999|ref|ZP_00047825.2| COG1196: Chromosome segregation ATPases [Magnetospirillum magnetotacticum MS-1] Length = 191 Score = 79.6 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 26/184 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKTLTLRGFKSFASATTLSFEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRS-VRCLQINDVVIR 111 DV G+ ++ +G I + + RS IN R Sbjct: 61 MEDVIFAGTSGRPPLGRAEVSLTIDNTDGALPIDYTEVTISRTLFRSGGSEYAINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + +RR F++ + R E Sbjct: 121 LLDIQDLLSDSGLGREMHVIVGQGQLDAVLRATPEDRRGFVEEAAGVLKHR-----KRKE 175 Query: 164 RLMR 167 + +R Sbjct: 176 KALR 179 >gi|329936734|ref|ZP_08286441.1| chromosome associated protein [Streptomyces griseoaurantiacus M045] gi|329303964|gb|EGG47847.1| chromosome associated protein [Streptomyces griseoaurantiacus M045] Length = 1189 Score = 79.6 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 95/290 (32%), Gaps = 43/290 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA----------RVEMINALSSLIM 213 + +R + + + Q+ LG + +A R + L+ ++ Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 + + + + + + L ++ RR Sbjct: 236 RLREALDAEIAD-------EAALKERKETAESALREALRHEAALEEEVRR 278 >gi|256397108|ref|YP_003118672.1| chromosome segregation protein SMC [Catenulispora acidiphila DSM 44928] gi|256363334|gb|ACU76831.1| chromosome segregation protein SMC [Catenulispora acidiphila DSM 44928] Length = 1224 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 109/293 (37%), Gaps = 31/293 (10%) Query: 1 MTNRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGF 56 M+ + +K L + F+++AS L + T VG NG GK+N+++A++++ + Sbjct: 1 MSPHVYLKTLTLRGFKSFASATTLRLEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKSL 60 Query: 57 RRASYADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQIND 107 R DV G+ A V +D ++ ++ + IN Sbjct: 61 RGGKMEDVIFAGTTGRAPLGRAEVALTIDNSDGALPIDYSEVTISRIMFRNGGSEYAING 120 Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159 R++D + + + + +D + +RR F++ + R Sbjct: 121 DPCRLLDIQELLSDSGIGREMHVILGQGRLDAVLQAGPEDRRSFIEEAAGVLKHR----- 175 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 E+ +R + + + + Q+ LG + +AR ++ + S + + + Sbjct: 176 KRKEKALRKLDAMQANLTRLTDLTGELRRQLKPLGRQAEVARRAVV--IQSDLRDARLRL 233 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF---DGRKMDSMSRRTLIGPH 269 + F D+ ++ + ++L+ ++ + R + P+ Sbjct: 234 LADDLVGMRQAFEQEAADEEQMKVRRKQLERLYAEAQAQESELEQRGAALVPY 286 >gi|315604348|ref|ZP_07879414.1| SMC structural maintenance of chromosomes partitioning protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315314054|gb|EFU62105.1| SMC structural maintenance of chromosomes partitioning protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 1194 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 103/279 (36%), Gaps = 41/279 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L T VG NG GK+N+++A++++ R R Sbjct: 1 MYLKNLTLRGFKSFASATTLALQPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQ 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 ADV G+ + A+V+ D + +E + R L IN +R Sbjct: 61 MADVIFAGTSGRAALGRAQVDLTIDNTDGLLDIEYSEVTISRTLFRGGGSEYSINGTPVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I S ERR F++ + R E Sbjct: 121 LLDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE------AQMAELGVKINIARVE-MINALSSLIMEYV 216 R ++ D++ ++ Q+ L +AR +I A + Sbjct: 176 RALK------KLADMDANLVRVLDLTNEIHRQLGPLARAARLARRASLIQARVRDAKARL 229 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255 ++ + L D+ AL+ +++ R Sbjct: 230 LADDLASARAKLAAL--QASDEETTALRASLEERIAASR 266 >gi|302541733|ref|ZP_07294075.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC 53653] gi|302459351|gb|EFL22444.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC 53653] Length = 536 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 70/367 (19%), Positives = 122/367 (33%), Gaps = 47/367 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYADVT 65 + + I +R + L FD + I VGDN GK+ ILEAI G+ R R Y D++ Sbjct: 2 LSKIVIHNYRTFREFELDFDPEMNILVGDNDAGKSTILEAIELGLTGK-LRGRPLYQDLS 60 Query: 66 --RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + A + + I ++ D + + + + Sbjct: 61 PYLFHQDAVSEWIADLREGRAVPPPEIIIDLFLDSTPEAATLRGNNNLLKADEPGVRIRV 120 Query: 124 WLVPSMD----RIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 L P + R +D + F + R + L+ N L Sbjct: 121 ALNPDYEAEYKEFIKKPDEVRLIPTEYYKVDWLAFDGNGVTFRSIPASASLIDAANIHLQ 180 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 G D I++++ RV++ A SL + Q E+ I L G + Sbjct: 181 SG-VDYYMKHIIDSRLKA------DERVKLTRAYRSLRETFAQDESIVKINGDLRGTSND 233 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 D+ + K ++ I PH DL + K GEQ Sbjct: 234 VSDRELTLNIDVSQKSSWES----------GIVPHLDDLPFQFVGK---------GEQST 274 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDK 352 + + + ++ A I+L++E HL L + ++ Q+F+T Sbjct: 275 LKILL------ALNKKVDDAHIVLVEEPENHLSFPNLGKLVKKISKKCEDQQVFITTHSS 328 Query: 353 SVFDSLN 359 V + L Sbjct: 329 FVLNKLG 335 >gi|297559198|ref|YP_003678172.1| chromosome segregation protein SMC [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843646|gb|ADH65666.1| chromosome segregation protein SMC [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 1181 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 101/276 (36%), Gaps = 29/276 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MYLKNLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS-IKLETRD---DRSVRCLQINDVVIR 111 DV G+ ++ +G I ++ R IN R Sbjct: 61 MEDVIFAGTSTRQALGRAEVSLTIDNTDGALPIDYTEVTIRRTMFRNGGSEYAINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + ERR ++ + R E Sbjct: 121 LLDIQDLLSDSGIGREMHVIVGQGQLDTVLHAGPEERRALIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R N + + + + Q+ LG + +AR + + + + + + Sbjct: 176 KAIRKLNAMQGNLDRVTDLTAELRRQLKPLGRQAELARRAAV--IQADLRDARLRLLADD 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 I ++LTG L + L A + + + Sbjct: 234 I-VTLTGQLAKEEADEKEVLARRGAAEAALTQTQER 268 >gi|326443710|ref|ZP_08218444.1| chromosome segregation protein [Streptomyces clavuligerus ATCC 27064] Length = 1376 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 101/317 (31%), Gaps = 50/317 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMIN---- 206 + +R + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLESMKANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 207 ALSSLIMEYVQKE-------NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 L + + E +L + + + AL + ++ Sbjct: 236 RLQRALRAEIADEAALKARKEAAEARLKAALAREAELEGEVRALVPRLQRAQQTWYELSQ 295 Query: 260 MSRRTLIGPHRSDLIVD 276 ++ RT ++ V Sbjct: 296 LAERTRGTVSLAEARVK 312 >gi|289768859|ref|ZP_06528237.1| chromosome segregation protein SMC [Streptomyces lividans TK24] gi|289699058|gb|EFD66487.1| chromosome segregation protein SMC [Streptomyces lividans TK24] Length = 1197 Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 100/296 (33%), Gaps = 49/296 (16%) Query: 2 TNRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFR 57 ++ + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 9 SDGVHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLR 68 Query: 58 RASYADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDV 108 DV G+ ++ +G I QIN Sbjct: 69 GGKMEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGD 128 Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 R++D + + + + +D + M RR F++ + R Sbjct: 129 TCRLLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----K 183 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINA 207 E+ +R + + + Q+ LG + AR+ ++ Sbjct: 184 RKEKALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLAD 243 Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 + E +Q E L + A ++E K L ++ RR Sbjct: 244 DLVRMREALQAEVADEAAL----------KERKEAAEQELGKALRREADLEDEVRR 289 >gi|239944604|ref|ZP_04696541.1| putative chromosome segregation protein [Streptomyces roseosporus NRRL 15998] gi|291448067|ref|ZP_06587457.1| chromosome segregation protein [Streptomyces roseosporus NRRL 15998] gi|291351014|gb|EFE77918.1| chromosome segregation protein [Streptomyces roseosporus NRRL 15998] Length = 1240 Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 51/324 (15%), Positives = 107/324 (33%), Gaps = 50/324 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMI----- 205 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 206 ---NALSSLI---MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 +AL I E ++++ +L + + + L + ++ Sbjct: 236 TLRDALRDEIADEAELKKRKDVAEAELKTALLREAELEGEVRRLAPRLQRAQQTWYELSQ 295 Query: 260 MSRRTLIGPHRSDLIVDYCDKAIT 283 ++ R +D V +A Sbjct: 296 LAERVRGTISLADARVRSASQAPA 319 >gi|167042367|gb|ABZ07095.1| putative RecF/RecN/SMC N terminal domain protein [uncultured marine crenarchaeote HF4000_ANIW97M7] Length = 686 Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 113/284 (39%), Gaps = 35/284 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + F ++ L FD T+F+G+NG GK++I+EAI+F G+ R A DV R Sbjct: 2 ITSVKLHNFLSHKDTELSFDNGVTVFIGENGAGKSSIIEAITFALFGKTTRGAI-EDVIR 60 Query: 67 IGSPSFFS-TFARVEGMEGLADISI-----KLETRDDRSVRCLQINDVVIRVVDELNKH- 119 G + + V G + A I E DD S+ + + V + ++ Sbjct: 61 DGETQAVTQIYFEVNGKKYQAIKKIHGSTSPQELLDDNSLPIAKGKEKVSEEIKKIIGLD 120 Query: 120 ---LRISWLVP--SMDRIFSGLSMER-RRFLDRMV-----FAIDPRHRRRMIDFERLMRG 168 L I+ +VP + I + + R +D+++ A + + F + Sbjct: 121 YDTLGIASIVPQGQLTEIIQSDNGIKLRSLIDKVIGTGKYSAAEKGLGEGITAFREYLTE 180 Query: 169 RNRLLTEGYFDSSWCSSIEAQM-AELGVKINIA---RVEMINALSSLIMEYVQKENFPHI 224 + ++++ QM KI + E + ++ E ++K Sbjct: 181 K--------YNNTDEDVENVQMEINHAEKIIANSKPQKEKLEEMAESFKEKIKKLQEKKE 232 Query: 225 KLSLTG----FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 +LS+ L K D + ++K+E + + D + + +R Sbjct: 233 ELSVNYEKIIHLKDKEDNVWKSIKQEISSLVTDNEEHSKIIQRC 276 Score = 41.0 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 16/129 (12%) Query: 238 QSFCALKEEYAKKLF-DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 +S +Y ++L + + ++ T I + + + + + S GEQ V Sbjct: 544 ESISRNASQYLEQLKTEIKYLELFQDGTSI-----KIQCNTNNGQRPVKNLSGGEQVCVA 598 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--------GSQIFMT 348 + + L + L+ ++ I++LDE +A+LD+ + + Q + Sbjct: 599 LAVRLGMSDLMIKSSLK--IMVLDEPTAYLDKTHCEYFVDAIQQLTNFMNEKQNFQFIII 656 Query: 349 GTDKSVFDS 357 D+ +++S Sbjct: 657 THDEDIWES 665 >gi|326776319|ref|ZP_08235584.1| chromosome segregation protein SMC [Streptomyces cf. griseus XylebKG-1] gi|326656652|gb|EGE41498.1| chromosome segregation protein SMC [Streptomyces cf. griseus XylebKG-1] Length = 1235 Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 48/293 (16%), Positives = 98/293 (33%), Gaps = 49/293 (16%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 + + ++ E +L + A + E L +++ RR Sbjct: 236 TLRDALRDEIADEAEL----------KKRKDAAEAELRTALAREAELEGEVRR 278 >gi|86742278|ref|YP_482678.1| chromosome segregation protein SMC [Frankia sp. CcI3] gi|86569140|gb|ABD12949.1| condensin subunit Smc [Frankia sp. CcI3] Length = 1222 Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 97/254 (38%), Gaps = 27/254 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AI+++ + R + Sbjct: 1 MHLKNLTLRGFKSFASSTSLHLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGT 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 +DV G+P+ ++ +G I T R IN R Sbjct: 61 MSDVIFAGTPARPALGRAEVLLTIDNSDGALPIEYTEVTIGRLMFRSGESEYTINGTGCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + L + +D + +RR F++ + R E Sbjct: 121 LLDIQELMSDSGIGRELHVIVGQGQLDAVLHARPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE-MINALSSLIMEYVQKENFP 222 + +R + + + + Q+ LG + IAR +I A + ++ Sbjct: 176 KALRKLEAMSANLTRLTDLSAELRRQLGPLGRQAEIARKAGVIQASLRDARLRLLADDLH 235 Query: 223 HIKLSLTGFLDGKF 236 ++++T L + Sbjct: 236 RAQVAITSDLADEE 249 >gi|257055009|ref|YP_003132841.1| condensin subunit Smc [Saccharomonospora viridis DSM 43017] gi|256584881|gb|ACU96014.1| condensin subunit Smc [Saccharomonospora viridis DSM 43017] Length = 1199 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 32/270 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+L+A+ ++ +G R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGTQGAKDLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTSGRAPLGRAEVTLTIDNSDGALPIEYTEVSITRRMFRDGASEYEINGNACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I ERR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLSEILQAKPEERRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEMI--NALSSLIMEYVQKE 219 + + R +G D + + Q+ LG + IAR + L + + Sbjct: 176 KAL--RKLTAMQGNLDRLNDLTTELRRQLKPLGKQAEIARRAQVIQAELRDAKLRLYADD 233 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 K D K ++ A E+ + Sbjct: 234 LVTQRKAIEKDEADEKAARARRAEVEQMLE 263 >gi|325067015|ref|ZP_08125688.1| chromosome segregation protein SMC [Actinomyces oris K20] Length = 194 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 26/184 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L I F+++AS L + T VG NG GK+N+++A++++ + R S Sbjct: 1 MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 ADV G+ S ++ +G I + + +IN R Sbjct: 61 MADVIFAGAGSRPALGRAEVSLTIDNTDGALPIDYTEVTISRTLFRGGGSEYRINGSPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + S +RR F++ + R E Sbjct: 121 LLDVQELLSDTGLGRQMHVIVGQGQLDAVLSATPEDRRGFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMR 167 R +R Sbjct: 176 RALR 179 >gi|184200699|ref|YP_001854906.1| chromosome partition protein SMC [Kocuria rhizophila DC2201] gi|183580929|dbj|BAG29400.1| chromosome partition protein SMC [Kocuria rhizophila DC2201] Length = 1214 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 104/281 (37%), Gaps = 40/281 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKTLTVRGFKSFASATTFHFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + + A V AD ++ +E + R L IN R Sbjct: 61 MEDVIFAGTSARSALGRAHVSLTIDNADGALPIEYSEVTISRTLFRSGGSEYAINGRSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +DRI +RR F++ + R E Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDRILQATPEDRRGFIEEASGILKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + T IE Q+ LG + AR + + + + Sbjct: 176 KTLRKLESVQTNLDRLEDLTGEIERQLTPLGRQARTARKA--QRIQYDVRDARARLLADD 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 + ++ +D + S A R+ D + + T Sbjct: 234 V-VAARAGMDTDQEASAGA-----------RRRRDELEKTT 262 >gi|328885319|emb|CCA58558.1| Chromosome partition protein smc [Streptomyces venezuelae ATCC 10712] Length = 1193 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 99/271 (36%), Gaps = 33/271 (12%) Query: 2 TNRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFR 57 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 9 VPGVHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLR 68 Query: 58 RASYADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDV 108 DV G+ ++ +G I + L R QIN Sbjct: 69 GGKMEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIDYAEVTLTRIMFRGGSSEYQINGD 128 Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 R++D + + + + +D + M RR F++ + R Sbjct: 129 TCRLLDFQDLLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----K 183 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI-------NALSSLIM 213 E+ +R + + + Q+ LG + +AR ++ L L Sbjct: 184 RKEKALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAVVIQADLRDARLRLLAD 243 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + VQ + +++ L + + + L+ Sbjct: 244 DLVQLRSALTAEVADEAALLARKEATEEELR 274 >gi|291333914|gb|ADD93594.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 160 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 ++ +E++ +L + + DS + + +GPHR DL+ D + + S GEQK++++ Sbjct: 32 ENLWLEEEDFKNELREVYQKDSEVKFSTVGPHRLDLLYDINNVK-SGDILSRGEQKLLIL 90 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 L + + N I L+D++ + LDE+ ++ D Q F++ D Sbjct: 91 LTILGFNQHMHNLGNKHSIFLVDDLPSELDEENFLKCLELILDAPGQKFVSSIDPDFL 148 >gi|282861359|ref|ZP_06270424.1| chromosome segregation protein SMC [Streptomyces sp. ACTE] gi|282564017|gb|EFB69554.1| chromosome segregation protein SMC [Streptomyces sp. ACTE] Length = 1259 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 96/294 (32%), Gaps = 39/294 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGRLDSVLHADPTGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210 + +R + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLEAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 + E ++ E L ++ A + + ++ +++T Sbjct: 236 RLREALRSEIADEAALKRRREAAEADLKAALAREADLEDEVRRLAPRLQRAQQT 289 >gi|182435694|ref|YP_001823413.1| putative chromosome segregation protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464210|dbj|BAG18730.1| putative chromosome segregation protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1235 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 101/283 (35%), Gaps = 29/283 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK-INIARVEMINALSSLIMEYVQKENFP 222 + +R + + + Q+ LG + R +I A + ++ Sbjct: 176 KALRKLDAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 223 HIKLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 ++++L + + + + A + E L +++ RR Sbjct: 236 TLRVALRDEIADEAELKKRKDAAEAELRTALAREAELEGEVRR 278 >gi|163840517|ref|YP_001624922.1| chromosome segregation protein [Renibacterium salmoninarum ATCC 33209] gi|162953993|gb|ABY23508.1| chromosome segregation protein [Renibacterium salmoninarum ATCC 33209] Length = 1204 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 29/275 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLRGFKSFASATTFDFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ +G+ I + + IN R Sbjct: 61 MEDVIFAGTSGRPPLGRAQVSLTIDNADGVLPIDYSEVTISRTLFRTGGSEYAINGESAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D++ +RR F++ + R E Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDKVLHATPEDRRGFIEEAAGILKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS-SLIMEYVQKENFP 222 + +R + S I Q+ LG + +AR + ++ Sbjct: 176 KTLRKLEAMQANLTRLGDLTSEIRRQLTPLGKQAEVARRAQSVQFEVRDARARLLADDLV 235 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 ++ SL + + + A + E L GR Sbjct: 236 ELRGSLEQ--EVADETALKARRAEVEAALEIGRLR 268 >gi|307329840|ref|ZP_07608995.1| SMC domain protein [Streptomyces violaceusniger Tu 4113] gi|306884569|gb|EFN15600.1| SMC domain protein [Streptomyces violaceusniger Tu 4113] Length = 581 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 99/294 (33%), Gaps = 43/294 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I Q+N R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNADGALPIDYAEVTITRIMFRNGGSEYQLNGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDGVLHADPTGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 211 LIMEYVQKENFPHIKL---SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + E ++ E +L + + Q A EE ++L R D+ Sbjct: 236 TLREALRAEIADEAELKRRKEAAEAELRTAQRREAALEEQVRQLAP-RLRDAQQ 288 >gi|320008307|gb|ADW03157.1| chromosome segregation protein SMC [Streptomyces flavogriseus ATCC 33331] Length = 1252 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 94/280 (33%), Gaps = 45/280 (16%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGRLDSVLHADPTGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210 + +R + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLEAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 + E +++E L + + + LK A++ Sbjct: 236 RLREALREEIADEAALK------QRREATESELKAALARE 269 >gi|196250345|ref|ZP_03149038.1| SMC domain protein [Geobacillus sp. G11MC16] gi|196210234|gb|EDY05000.1| SMC domain protein [Geobacillus sp. G11MC16] Length = 629 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 60/372 (16%), Positives = 126/372 (33%), Gaps = 49/372 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRA 59 + + L I FR + + + T+ +G+NG GK+ I++AI + G+ Sbjct: 1 MHLSKLVIEGFRCFNEKAEIPLNKGLTVILGENGSGKSAIVDAIRLILNDDEFGKSMVSE 60 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDELNK 118 F+ +F E I +E + V + + + + + Sbjct: 61 RD----------FWHSFGE-SKNESSTSFRIDIEFSKLKPVEQVAYLPWLKTEDLSTASL 109 Query: 119 HLRISWLVPSMDRIFS---GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 HL++ G + F +I + + D E +R Sbjct: 110 HLKVQNKTNQNKHYKKELWGGNSSSSSFEWDTYKSIQCTYLPPLRDAEHRLR-------- 161 Query: 176 GYFDSSWCSSIEAQMAELGVKI---NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 +++A L KI N A+ ++ + + ++ E K ++ L Sbjct: 162 --------DVRGSRLARLITKIEPENSAKERLVETVKQNNQQLLKDELIVKAKTNIKSRL 213 Query: 233 DGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + L ++ + D R + + + L P D D+ ++ S G Sbjct: 214 ---VETLGEKLAQDISISFSDTRFERIIENLKLLFYPFLDDS--TSIDEFRELSENSLGY 268 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD----IGSQIFM 347 ++ + LA ++ ILL++E AHL + L + G Q+ + Sbjct: 269 NNLIYLATVLAELEDVNEQEISCKILLIEEPEAHLHPQLQTKLLEYIEKQAKLKGVQVIV 328 Query: 348 TGTDKSVFDSLN 359 T ++ S++ Sbjct: 329 TTHSPTIAASID 340 >gi|154508959|ref|ZP_02044601.1| hypothetical protein ACTODO_01475 [Actinomyces odontolyticus ATCC 17982] gi|153798593|gb|EDN81013.1| hypothetical protein ACTODO_01475 [Actinomyces odontolyticus ATCC 17982] Length = 1191 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 32/204 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++A++++ R R Sbjct: 1 MYLKNLTLRGFKSFASATTLALEPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQ 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 ADV G+ + A+V+ D + +E + R L IN R Sbjct: 61 MADVIFAGTSGRAALGRAQVDLTIDNTDGLLDIEYSEVTISRTLFRGGGSEYSINGTPAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I S ERR F++ + R E Sbjct: 121 LLDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEPAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE 187 R ++ D++ ++ Sbjct: 176 RALK------KLADMDANLVRVLD 193 >gi|293192415|ref|ZP_06609526.1| putative RecF/RecN/SMC N domain protein [Actinomyces odontolyticus F0309] gi|292820330|gb|EFF79324.1| putative RecF/RecN/SMC N domain protein [Actinomyces odontolyticus F0309] Length = 476 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 32/204 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS LV T VG NG GK+N+++A++++ R R Sbjct: 1 MYLKNLTLRGFKSFASATTLVLQPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQ 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 ADV G+ + A+V+ D + +E + R L IN R Sbjct: 61 MADVIFAGTSGRAALGRAQVDLTIDNTDGLLDIEYSEVTISRTLFRGGGSEYSINGTPAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I S ERR F++ + R E Sbjct: 121 LLDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE 187 R ++ D++ ++ Sbjct: 176 RALK------KLADMDANLVRVLD 193 >gi|298375964|ref|ZP_06985920.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298267001|gb|EFI08658.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 573 Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 75/382 (19%), Positives = 135/382 (35%), Gaps = 67/382 (17%) Query: 5 IKIKFLNISE-FRNYASLRLVFDA--QHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRAS 60 +K+ L I+ FRN L L FD+ + +G+NG GKTNILEA+ S S Sbjct: 1 MKLLALKITSEFRNLEGLNLRFDSTNDTYVIIGNNGTGKTNILEALSSVFSTLLSH---- 56 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 S F +F + DI+ +++ S + NDVV+ D Sbjct: 57 --------STDFIFSFVL---RYEINDITYRVKHDKATSTTEYKKNDVVVTDAD------ 99 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + +RI S E R D + + + +L+ Y D Sbjct: 100 -----MNYPNRIVCNYSGEDTRMWDNYYKKANEEYLESVRT-----AEAPNVLSMIYIDR 149 Query: 181 SWCSSIEAQMAELGVK-INIARVEMINALSSLIMEYVQKENFPHIKLSL-TGFLDGKFDQ 238 + I + L + +NIA E + + N I L T L + Sbjct: 150 TMWKYI--LLCMLATRDVNIAFDEFLQE-----KLGIASGNLDSIDLIFNTAKLSKWRRE 202 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC----------------DKAI 282 + L + LF S + + P+ D + + + I Sbjct: 203 NQITLFIRQLRALFGDSPSISSNDISKFNPNDDDARLLFNKYMGASQVIDTLNISFNGGI 262 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 A S GE+K++++ ++ + ++L+DE +H+ +++ L + + Sbjct: 263 ESAFLSEGEKKMMVI------LFILEAISDEQTLVLMDEPDSHIHISRKSELREMFDHMS 316 Query: 343 SQI-FMTGTDKSVFDSLNETAK 363 + +T ++ S E K Sbjct: 317 HRSNIITSHSPTLTASFEEKTK 338 >gi|327200673|pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex With Amp- Pnp gi|327200674|pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex With Amp- Pnp gi|327200675|pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex With Amp- Pnp gi|327200676|pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex With Amp- Pnp Length = 339 Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 59/375 (15%), Positives = 132/375 (35%), Gaps = 53/375 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K++ + + FR+++ + F + +G NG GK+++L+AI + R Sbjct: 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI-LVGLYWPLR-IKD--- 55 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN--DVVIRVVDELNKHLRI 122 + F +V + D+ + + R R I + L + Sbjct: 56 IKKDE------FTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWK 109 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR--GRNRLLTEGYFDS 180 PS I S + + +F ++ + R+ + ++ + + Sbjct: 110 HVTEPSSKAI----SAFMEKLIPYNIF-LNAIYIRQ-GQIDAILESDEAREKVVREVLNL 163 Query: 181 SWCSSIEAQMAEL--GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + +++EL G +E + +L E + F +GK+ + Sbjct: 164 DKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSE 223 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 +E ++ L V + K + S GE+ + + Sbjct: 224 VVVRAEE-----------------------NKVRLFVVWEGKERPLTFLSGGERIALGLA 260 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---DIGSQIFMTGTDKSVF 355 LA + ++ G +L+LDE + +LDE++R L I+ Q+ + D+ + Sbjct: 261 FRLAMSLYLA---GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELK 317 Query: 356 DSLNETAKFMRISNH 370 D+ + + + N Sbjct: 318 DA-ADHVIRISLENG 331 >gi|84498328|ref|ZP_00997125.1| putative chromosome associated protein [Janibacter sp. HTCC2649] gi|84381828|gb|EAP97711.1| putative chromosome associated protein [Janibacter sp. HTCC2649] Length = 1188 Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 94/275 (34%), Gaps = 29/275 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS + + T VG NG GK+N+++A++++ + R Sbjct: 1 MYVKSLTLKGFKSFASATTMRLEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I T IN R Sbjct: 61 MEDVIFAGTAGRPPLGRAEVSLTIDNTDGALPIDYAEVTITRTMFRNGGSEYAINGTPSR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + ERR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R + + I Q+ LG + AR + + + + Q+ Sbjct: 176 RALRKLDAMEANLTRVHDLTGEIRRQLGPLGRQAEAARKAAV--IQAEARDARQRLLADD 233 Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 + +L+ T + + + + L R Sbjct: 234 LVQLTSTLEQEVADETALIERRTTVENALESYRSR 268 >gi|260907265|ref|ZP_05915587.1| chromosome partition protein SMC [Brevibacterium linens BL2] Length = 1199 Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 102/281 (36%), Gaps = 28/281 (9%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKNLRGGK 60 Query: 61 YADVT-----RIGSPSFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV + + ++ +G + + + +N R Sbjct: 61 MDDVIFAGTSKRQALGRAEVTLTIDNTDGAIPVDYTEVTISRTLFRTGGSEYAVNGTPAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L K + + +D I +ERR F++ + R + Sbjct: 121 LLDIQELLNDSGLGKEMHVIVGQGRLDAILHADPIERRSFIEEAAGVLKHR-----RRKD 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYVQKENFP 222 + +R L T S + + Q+ LG + A+ + A + ++ Sbjct: 176 KAVRKLTGLQTNLDRLSDLRTELNRQLGPLGRQAEAAQKAATVQATLRDSTARLLADDTV 235 Query: 223 HIKLSLTGFLDGKFDQSFCALKE-EYAKKLFDGRKMDSMSR 262 ++ SL + + + E+ + + R + SR Sbjct: 236 RLQSSLASTASAGGEDGGDRISDLEHRRSRTEERLQEIESR 276 >gi|16081317|ref|NP_393635.1| chromosome segregation protein [Thermoplasma acidophilum DSM 1728] gi|18202976|sp|Q9HLR8|RAD50_THEAC RecName: Full=DNA double-strand break repair rad50 ATPase gi|10639302|emb|CAC11304.1| myosin heavy chain (mhcA) related protein [Thermoplasma acidophilum] Length = 896 Score = 76.9 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 110/306 (35%), Gaps = 33/306 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + F ++ + FD I VG NG GK++I++AI F G R D+ Sbjct: 1 MIIDRIRLINFLSHEDSEIFFDTGVNIIVGHNGAGKSSIIDAIRFALFGDK-RTKKIEDM 59 Query: 65 TRIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVV---------D 114 R G+ S G + SI +++ S + ++ + Sbjct: 60 IRKGAKSLEVEMEFRHGGHTYIIRRSITRRSKNPESNAMIMVDGSALSQSVKDANDYIEK 119 Query: 115 ELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-----FE 163 + + +L MD + SG R++ LD ++ ++ + Sbjct: 120 NIITKSKDVFLNSVFSKQGEMDDLISGDPARRKKLLDEILEIEKLEETYDVLKDVIDSLQ 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + L++E D + +AEL +I+ A+ S ++ ++ + + Sbjct: 180 AGISNLDYLISENERDRDDLRRYQDDVAELSKQIDQE-----EAIESDLLRKKEEASAEY 234 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 +S + ++ +L +E + + RK+D + R Y + + Sbjct: 235 NAVSKELIMLDATLKNMMSLSDEANRYEEEIRKIDGKLQEISGSTER------YNEITSS 288 Query: 284 IAHGST 289 + S Sbjct: 289 KVYASR 294 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 89/231 (38%), Gaps = 28/231 (12%) Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 + +N L + + +E Q+ ++ R + + L S + E Q+ + + Sbjct: 668 KRKNELSVKASESETRLKYVEGQIQATLSSLSGKRSK-VETLRSHVSEIEQRISDRERDI 726 Query: 227 SLTGFLDGKFDQSFCALKEEYAK----KLFDGRKMDSMSRRTLIGPHRSDLIVDYC---- 278 ++ + ++E + K + D ++ +T DL D Sbjct: 727 ERMKKIEKAIN-DVKRIREAFGKNGVPAMIRQSVSDYLTAKTRDYLSSFDLDFDDISVDQ 785 Query: 279 DKAITIAHG---------STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 D +T+ G S GE+ V I +A A+ ++ +L+LDE +A LDE+ Sbjct: 786 DFNVTVYRGGVPEGIDSLSGGEKTAVAFAIRVAVAQFLNADL---SLLILDEPTAFLDEE 842 Query: 330 KRNALFRIV------TDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374 +RN+L I+ + + Q+ + + + S N + +I + Sbjct: 843 RRNSLSDIIEYTLKDSSVIPQVIIISHHRELLASANVAIEVKKIGGRSVVS 893 >gi|290957114|ref|YP_003488296.1| chromosome associated protein [Streptomyces scabiei 87.22] gi|260646640|emb|CBG69737.1| putative chromosome associated protein [Streptomyces scabiei 87.22] Length = 1207 Score = 76.9 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 97/279 (34%), Gaps = 29/279 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYSEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQDLLSDSGIGREMHVIVGQGRLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + + Q+ LG + +AR + + + + + Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLADD 233 Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + +L + + + KE +L + ++ Sbjct: 234 LVRLRAALRTEVADEAALKQRKEAAETELKKALQREAHL 272 >gi|254383295|ref|ZP_04998648.1| chromosome segregation protein [Streptomyces sp. Mg1] gi|194342193|gb|EDX23159.1| chromosome segregation protein [Streptomyces sp. Mg1] Length = 648 Score = 76.9 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 77/213 (36%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G+ I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGVLPIDYAEVTITRIMFRGGSSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + +R + + + Q+ LG + Sbjct: 176 KALRKLDAMRANLARVQDLTEELRRQLKPLGRQ 208 >gi|229002236|dbj|BAH57702.1| hypothetical protein [Staphylococcus aureus] Length = 698 Score = 76.9 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 72/393 (18%), Positives = 136/393 (34%), Gaps = 64/393 (16%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--------G 55 ++ I + I FRN+ ++ + F + +G N GK+N+L A+S + G Sbjct: 11 KMYISSVKIKNFRNFDNIDIDFHEGVNVLIGHNNSGKSNLLRALSLIFDGSVRKQLSVED 70 Query: 56 FRRASYAD---------VT----------RIGSPSFFSTFARVEGMEGLADISIKLETRD 96 F + + V R+ S + + +E + I+ E Sbjct: 71 FNNSLTKESLKKEAPKIVISVHITQSENERLMSDELITVSNWLTKLEEPYEARIQYEFFL 130 Query: 97 DRSVRCLQINDVV-IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + I+ V I +E+ +R ++ +++I+ G + + + D + Sbjct: 131 PKDEEKNYIDLVKNIDEKEEIWNLIRSQFIRLYVNKIWVGNPEHQIPIDNDSLNKFDFQF 190 Query: 156 RRRMIDFER-LMRGRNRLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 + D ER + G+N LL + + D S E K+ R E + S L Sbjct: 191 LDAIRDVERDMFSGKNTLLKSVIDFFIDYDIKSDETITEEEQKEKLEERRKEFSDNSSDL 250 Query: 212 IMEYVQKENFPHIK-LSLTGFLDGKFDQSFCALKEEYAK-------KLFDGRKMDSMSRR 263 I ++ + + K LS T + +D+S K + +L + Sbjct: 251 IETIHKRLDSGNQKILSYTNGIGASYDKSTPDFKGNLTESEIYTVLQLIIKHETGMTLPI 310 Query: 264 TLIGPHRSDLIVD--YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321 T G ++LI K + G + + PIL ++E Sbjct: 311 THNGLGYNNLIFMALLLSKMQADSDG-----------------NFLGSNAKVFPILAIEE 353 Query: 322 ISAHLDEDKRNALFRIVT-----DIGSQIFMTG 349 AHL +N + + QIF+T Sbjct: 354 PEAHLHPTMQNEFIKFLKNNIREKKVKQIFITT 386 >gi|325963726|ref|YP_004241632.1| condensin subunit Smc [Arthrobacter phenanthrenivorans Sphe3] gi|323469813|gb|ADX73498.1| condensin subunit Smc [Arthrobacter phenanthrenivorans Sphe3] Length = 1194 Score = 76.9 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 103/274 (37%), Gaps = 29/274 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTVRGFKSFASATTFNFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ A V +D ++ +E + R L IN R Sbjct: 61 MEDVIFAGTSGRPPLGRAHVSLTIDNSDGALPIEYSEVTISRTLFRTGGSEYAINGAGCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +DR+ +RR F++ + R E Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDRVLHATPEDRRGFIEEAAGILKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R + + I Q+ LG + +AR + + + + Sbjct: 176 RTVRKLEAMQANLQRLTDLTGEIRRQLTPLGKQAEVARRA--QRVQFDVRDARARLLADD 233 Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L L D + + + + ++L GR+ Sbjct: 234 LVQLQLALEQDVADEAALKERRTQAGQQLEAGRR 267 >gi|229821032|ref|YP_002882558.1| chromosome segregation protein SMC [Beutenbergia cavernae DSM 12333] gi|229566945|gb|ACQ80796.1| chromosome segregation protein SMC [Beutenbergia cavernae DSM 12333] Length = 1191 Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 100/276 (36%), Gaps = 31/276 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + ++ L + F+++AS L + T VG NG GK+N+++A++++ + R + Sbjct: 1 MHLRTLTLRGFKSFASATTLHLEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGA 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 +DV G+ S ++ +G I + + IN R Sbjct: 61 MSDVIFAGTASRPPLGRAEVSLTIDNADGALPIDYAEVTISRTLFSGGGSEYAINGTACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + ERR F++ + R + Sbjct: 121 LLDIQDLLSDSGLGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGILKHR-----KRKD 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI--NALSSLIMEYVQKENF 221 + +R + + + I Q+ L + ++AR + L + + Sbjct: 176 KALRKLEAMAANLARLTDLTAEIRRQLGPLAKQADVARRARVVQADLRDSRARLLADDL- 234 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 ++L+ T + + + ++E D R Sbjct: 235 --VQLTATLEQEIADETALRTARDEVEAAQADARGR 268 >gi|312194946|ref|YP_004015007.1| chromosome segregation protein SMC [Frankia sp. EuI1c] gi|311226282|gb|ADP79137.1| chromosome segregation protein SMC [Frankia sp. EuI1c] Length = 1219 Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++A++++ + R + Sbjct: 1 MYLKSLTLRGFKSFASSTTLRLEPGITCVVGPNGSGKSNVVDAMAWVLGEQGAKALRGGT 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ----INDVVIR 111 +DV G+PS ++ +G I T R Q IN R Sbjct: 61 MSDVIFAGTPSRPALGRAEVLLTIDNSDGALPIEYSEVTVGRLMFRSGQSEYTINGTSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + L + +D + ERR F++ + R E Sbjct: 121 LLDIQELMSDSGIGRELHVIVGQGQLDAVLHASPEERRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + Q+ LG + IAR Sbjct: 176 KALRKLEAMAANLTRLTDLSAELRRQLGPLGRQAEIARKA 215 >gi|262202013|ref|YP_003273221.1| chromosome segregation protein SMC [Gordonia bronchialis DSM 43247] gi|262085360|gb|ACY21328.1| chromosome segregation protein SMC [Gordonia bronchialis DSM 43247] Length = 1217 Score = 76.5 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R ++N R Sbjct: 61 MEDVIFAGTSGRPPLGRAEVTLTIDNADGALPIEYSEVSITRRMFRDGAGEYEVNGSKCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLSAILESRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KAVRKLDAMQANLARLTDLTAELRRQLKPLGRQAEVARRA 215 >gi|303244904|ref|ZP_07331230.1| SMC domain protein [Methanothermococcus okinawensis IH1] gi|302484721|gb|EFL47659.1| SMC domain protein [Methanothermococcus okinawensis IH1] Length = 997 Score = 76.5 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 67/162 (41%), Gaps = 22/162 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA-SYAD 63 + IK +NI FR++ + ++ FD T +G NG GK++I EA+++ RG + D Sbjct: 1 MIIKAINIRNFRSHKNTQISFDKGITTIIGHNGSGKSSIFEAMNYALYARGSVSNVNIDD 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI----------NDVVIRVV 113 + + G+ F +E + + + K+ + ++ N V + Sbjct: 61 LIKRGTNQFL-----IELLFEIGGNTYKVVRGRGKGGNIDRLYINNSLYAETNSEVNNKI 115 Query: 114 DELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVF 149 E+ +L ++ + + ER+R + ++ Sbjct: 116 KEILGIDHKVFLNAIYIKQGEINSLINLRPAERKRLIGTLLG 157 Score = 40.7 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 74/210 (35%), Gaps = 28/210 (13%) Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 L +N +L + + + ++ E KI+ + N + + K Sbjct: 763 NTLNNSKNNILEKIDNLDYYDKTYHDKLKENYEKISNKLNDANNKIVEVKSYLNSKTELL 822 Query: 223 HIKLS-LTGFLDGKFDQSFCALKEEYAKKLFDG-----------RKMDS--MSRRTLIGP 268 ++ L L+ + ++ +Y K + + R+ + + T Sbjct: 823 QNYVNNLNKLLNKEKEKERLEKYIDYLKDIRENVFSKNGFQQYLREKYIPLIQKYTNEIF 882 Query: 269 HRSDLIVDYCD---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 + +L + + + S GEQ V + + L + ++L Sbjct: 883 NEFELPYSHIQIKNDYDIIVDELPVKTLSGGEQIAVSLALRLG---ISKAVCNNLQCIIL 939 Query: 320 DEISAHLDEDKRNALFRIVTDIG--SQIFM 347 DE +A LDED+R L + +I SQ+F+ Sbjct: 940 DEPTAFLDEDRRKKLLNVFGNIKTISQVFV 969 >gi|302542227|ref|ZP_07294569.1| smc [Streptomyces hygroscopicus ATCC 53653] gi|302459845|gb|EFL22938.1| smc [Streptomyces himastatinicus ATCC 53653] Length = 522 Score = 76.5 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 99/294 (33%), Gaps = 43/294 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I Q+N R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNADGALPIDYAEVTITRIMFRNGGSEYQLNGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDGVLHADPTGRRAFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 211 LIMEYVQKENFPHIKLSL---TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + E ++ E +L + + Q EE+ ++L R D+ Sbjct: 236 TLREALRAEVADEAELKKRKEATEAELRTAQRRETALEEHVRQLAP-RLRDAQE 288 >gi|296139304|ref|YP_003646547.1| chromosome segregation protein SMC [Tsukamurella paurometabola DSM 20162] gi|296027438|gb|ADG78208.1| chromosome segregation protein SMC [Tsukamurella paurometabola DSM 20162] Length = 1194 Score = 76.5 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+NIL+A+ ++ +G R Sbjct: 1 MYLKSLTLKGFKSFASATTLRLEPGITCVVGPNGSGKSNILDALRWVMGEQGAKGLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTSGRAPLGRAEVTLTIDNSDGALPIDYTEVSITRRMFRDGAGEYEINGTKCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I ERR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGQLAAILESKPEERRAFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KAVRKLDSMQANLARLTDLTTELRRQLKPLGRQAEVARRA 215 >gi|260578980|ref|ZP_05846882.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] gi|258602845|gb|EEW16120.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] Length = 376 Score = 76.1 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 48/289 (16%), Positives = 101/289 (34%), Gaps = 45/289 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLKLEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTGDRKPLGRAEVTLTIDNSDGKLPIEYSEVSITRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + +I ERR F++ + R R+ + Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAFIEEAAGVLKHRRRKEKAQRK 180 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEM----IN 206 + N L + + Q+ L I RV++ + Sbjct: 181 LVNMQAN--LDRLH---DLTDELRKQLGPLARQAEAAQKASAVQATIRSTRVQLAAHKVK 235 Query: 207 ALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 LS + + ++ E + L L+ + ++ +EE L + Sbjct: 236 QLSEELNDSTRRSEMLAEQRAELQAELE-EHSETLAVTEEELRTALEEA 283 >gi|68536279|ref|YP_250984.1| chromosome segregation protein [Corynebacterium jeikeium K411] gi|68263878|emb|CAI37366.1| chromosome segregation protein [Corynebacterium jeikeium K411] Length = 1162 Score = 76.1 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 48/289 (16%), Positives = 101/289 (34%), Gaps = 45/289 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLKLEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTGDRKPLGRAEVTLTIDNSDGKLPIEYSEVSITRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + +I ERR F++ + R R+ + Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAFIEEAAGVLKHRRRKEKAQRK 180 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEM----IN 206 + N L + + Q+ L I RV++ + Sbjct: 181 LVNMQAN--LDRLH---DLTDELRKQLGPLARQAEAAQKASAVQATIRSTRVQLAAHKVK 235 Query: 207 ALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 LS + + ++ E + L L+ + ++ +EE L + Sbjct: 236 QLSEELNDSTRRSEMLAEQRAELQAELE-EHSETLAVTEEELRTALEEA 283 >gi|23465915|ref|NP_696518.1| chromosome partitioning protein Smc [Bifidobacterium longum NCC2705] gi|23326623|gb|AAN25154.1| chromosome partitioning protein Smc [Bifidobacterium longum NCC2705] Length = 1225 Score = 76.1 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 28/246 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A++++ + R S Sbjct: 1 MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R T I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233 Query: 224 IKLSLT 229 + S++ Sbjct: 234 AQRSMS 239 >gi|288931890|ref|YP_003435950.1| chromosome segregation protein SMC [Ferroglobus placidus DSM 10642] gi|288894138|gb|ADC65675.1| chromosome segregation protein SMC [Ferroglobus placidus DSM 10642] Length = 1166 Score = 76.1 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 47/294 (15%), Positives = 103/294 (35%), Gaps = 41/294 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRA 59 + I+ + + F++++ + F + G NG GK+NI++AI F R Sbjct: 1 MHIEKIELKNFKSFSRKTEIPFVKGFNVISGPNGSGKSNIIDAILFCLGLSSSTKVLRAE 60 Query: 60 SYADVT---RIGSPSFFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 D+ G + S R EG G ++ +++ + IN + D Sbjct: 61 KLTDLISLNSNGKEAEVSITFRSENEGENGKVEVKRRIKVTESGYYSYYYINSKPCSLAD 120 Query: 115 E--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFER 164 + + + + RI +RR+ +D + D + + + + E Sbjct: 121 VKKFLEKAGVYEDTPNVIMQGDVTRIVEMSPYQRRKVIDDIAGISEFDEKKEKALQELEV 180 Query: 165 L-------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI-ARVEMINALSS 210 + + + L + ++ S+ + EL +I R+E++ L Sbjct: 181 VRENIEKISAVLAEVEQHLKTLEKDREEALRYKSLLERKEELEREILAHKRLEVLKKLER 240 Query: 211 LIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSR 262 + E ++ E + K L EE+ + + + +MD + Sbjct: 241 VTKEIIESEREIDELHEEF-----AKIKAEVEKLNEEFEEIVREISSRMDERYK 289 >gi|294791072|ref|ZP_06756230.1| Smc [Scardovia inopinata F0304] gi|294458969|gb|EFG27322.1| Smc [Scardovia inopinata F0304] Length = 1257 Score = 76.1 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 30/267 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+NI++A++++ + R S Sbjct: 1 MYVKELTLRGFKSFANATTLRFEPGITAVVGPNGSGKSNIVDALAWVMGEQGAKTLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ +G DI + + IN +R Sbjct: 61 MEDVIFAGTSSRSPLGRAQVSLTIDNSDGTLDIDYSEVTISRTIFRNGGSEYAINGSPVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L H+ + +D I + R F++ + R E Sbjct: 121 LLDVQELLSDTGLGSHMHVVVGQGRLDSILRATPADNRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R I Q+ L + ++R +++ + + + + Sbjct: 176 RALRKLQGTQENLDRVDDLLQEIHRQLGPLRRQARVSRRA--DSIQISLRDAMSRLYADD 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKK 250 L +T D A++ + A++ Sbjct: 234 A-LQITHSRD-SLRHDLAAIRAQLAEQ 258 >gi|116671041|ref|YP_831974.1| condensin subunit Smc [Arthrobacter sp. FB24] gi|116611150|gb|ABK03874.1| condensin subunit Smc [Arthrobacter sp. FB24] Length = 1222 Score = 76.1 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 100/274 (36%), Gaps = 27/274 (9%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTVRGFKSFASATTFDFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ A V D ++ +E + R L IN R Sbjct: 61 MEDVIFAGTSGRPPLGRAHVSLTIDNTDGALPIEYSEVTISRTLFRTGGSEYAINGAGCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D++ +RR F++ + R E Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDKVLHATPEDRRGFIEEAAGILKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + S S I Q+ LG + +AR + + Sbjct: 176 KTVRKLEAMQANLQRLSDLTSEIRRQLTPLGKQAEVARRAQSVQF-DVRDARARLLADDL 234 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 ++L D + + A + + L +GR+ Sbjct: 235 VQLQSALAQDVADESALKARRAVVEEGLKNGRQR 268 >gi|291516692|emb|CBK70308.1| condensin subunit Smc [Bifidobacterium longum subsp. longum F8] Length = 1225 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 87/246 (35%), Gaps = 28/246 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A I + + R S Sbjct: 1 MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R T I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233 Query: 224 IKLSLT 229 + S++ Sbjct: 234 AQRSMS 239 >gi|152965358|ref|YP_001361142.1| chromosome segregation protein SMC [Kineococcus radiotolerans SRS30216] gi|151359875|gb|ABS02878.1| chromosome segregation protein SMC [Kineococcus radiotolerans SRS30216] Length = 1191 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 81/225 (36%), Gaps = 29/225 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKTLTLKGFKSFASATTLRLQPGITCVVGPNGSGKSNVVDALTWVMGEHSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFSTFA--------RVEGMEGLADIS----IKLETRDDRSVRCLQINDV 108 DV G+ A ++ +G I T IN Sbjct: 61 MEDVIFAGTTGPEGRSALGRAEVSLTIDNTDGALPIEFAEVTITRTMFRTGGSEYAINGQ 120 Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 R++D + + + + +D + ERR F++ + R Sbjct: 121 NCRLLDVQELLSDSGIGREMHVIVGQGQIDAVLHASPEERRAFIEEAAGVLKHR-----R 175 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 E+ +R + + + + I Q+ LG + +AR + Sbjct: 176 RKEKALRKLDAMEANLTRVADLVTEIRRQLKPLGRQAEVARRAQV 220 >gi|297191809|ref|ZP_06909207.1| chromosome segregation protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151081|gb|EDY65907.2| chromosome segregation protein [Streptomyces pristinaespiralis ATCC 25486] Length = 319 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 93/283 (32%), Gaps = 39/283 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMRANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 + E ++ E L ++ + + ++ Sbjct: 236 RMREALRTEVADEAALKQRKEAAEAELKAALTREADLEDEVRR 278 >gi|23335416|ref|ZP_00120652.1| COG1196: Chromosome segregation ATPases [Bifidobacterium longum DJO10A] gi|189439082|ref|YP_001954163.1| chromosome segregation ATPase [Bifidobacterium longum DJO10A] gi|189427517|gb|ACD97665.1| Chromosome segregation ATPase [Bifidobacterium longum DJO10A] Length = 1225 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 87/246 (35%), Gaps = 28/246 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A I + + R S Sbjct: 1 MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R T I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233 Query: 224 IKLSLT 229 + S++ Sbjct: 234 AQRSMS 239 >gi|322691439|ref|YP_004221009.1| chromosome partitioning protein Smc [Bifidobacterium longum subsp. longum JCM 1217] gi|320456295|dbj|BAJ66917.1| chromosome partitioning protein Smc [Bifidobacterium longum subsp. longum JCM 1217] Length = 1225 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 28/246 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60 + +K L + F+++AS+ L F+ T VG NG GK+NI++A I + + R S Sbjct: 1 MYLKELTLRGFKSFASVTTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R T I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233 Query: 224 IKLSLT 229 + S++ Sbjct: 234 AQRSMS 239 >gi|289643133|ref|ZP_06475262.1| chromosome segregation protein SMC [Frankia symbiont of Datisca glomerata] gi|289507025|gb|EFD27995.1| chromosome segregation protein SMC [Frankia symbiont of Datisca glomerata] Length = 1253 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++A++++ + R + Sbjct: 1 MHLKSLTLRGFKSFASSTTLHLEPGITCVVGPNGSGKSNVVDAMAWVLGEQGAKALRGGT 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 +DV G+PS ++ +G I T R IN R Sbjct: 61 MSDVIFAGTPSRPPLGRAEVLLTIDNTDGALPIDYSEVTVGRLMFRSGESEYTINGSTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + L + +D + +RR F++ + R E Sbjct: 121 LLDIQELMSDSGIGRELHVIVGQGQLDAVLHARPEDRRAFVEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + Q+ LG + IAR Sbjct: 176 KALRKLEAMAANLTRLTDLSAELRRQLGPLGRQAEIARKA 215 >gi|213691783|ref|YP_002322369.1| chromosome segregation protein SMC [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523244|gb|ACJ51991.1| chromosome segregation protein SMC [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457876|dbj|BAJ68497.1| chromosome partitioning protein Smc [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1225 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 28/246 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A++++ + R S Sbjct: 1 MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R T I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233 Query: 224 IKLSLT 229 + S++ Sbjct: 234 AQRSMS 239 >gi|291299633|ref|YP_003510911.1| chromosome segregation protein SMC [Stackebrandtia nassauensis DSM 44728] gi|290568853|gb|ADD41818.1| chromosome segregation protein SMC [Stackebrandtia nassauensis DSM 44728] Length = 1191 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 97/268 (36%), Gaps = 30/268 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++AI+++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTSGRAPLGRAEVTLTIDNSDGAIPIDYTEVSITRRMFRSGEGEYEINGDRCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162 ++D + L S + M + +RR F++ + R Sbjct: 121 LLD-IQDLLSDSGIGREMHVLVGQGKLDSYLHARPEDRRAFIEEAAGVLKHR-----KRK 174 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 E+ +R + + S + Q+ LG + +AR + + + + Q+ Sbjct: 175 EKALRKLEAMEANLNRLNDLTSELRRQLKPLGRQAELARRA--AGIQADLRDARQRLLAD 232 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKK 250 + TG D++ K E + Sbjct: 233 DLAQLRTGLARDLADENSVRAKRERVEA 260 >gi|326382861|ref|ZP_08204551.1| chromosome partition protein SMC [Gordonia neofelifaecis NRRL B-59395] gi|326198451|gb|EGD55635.1| chromosome partition protein SMC [Gordonia neofelifaecis NRRL B-59395] Length = 1218 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASSTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 ADV G+ ++ +G I + R R +IN R Sbjct: 61 MADVIFAGTSGRAPLGRAEVTLTIDNSDGALPIEYSEVSVTRRMFRDGAGEYEINGNSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I ERR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVILGQGRLAAILEARPEERRAFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KAVRKLDAMAANLDRLTDLTTELRRQLKPLGRQAEVARRA 215 >gi|271969192|ref|YP_003343388.1| chromosome segregation SMc protein [Streptosporangium roseum DSM 43021] gi|270512367|gb|ACZ90645.1| chromosome segregation SMC protein [Streptosporangium roseum DSM 43021] Length = 1227 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 26/222 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKTLTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEHSAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S ++ +G I + + R+ + IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTLTIDNSDGALPIDYTEVTISRLMFRAGQSEYAINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D++ +RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDQVLHAGPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 + +R + + + + Q+ LG + IAR + Sbjct: 176 KALRKLDAMQANLTRVQDLATELRRQLKPLGRQAEIARKAAV 217 >gi|239621193|ref|ZP_04664224.1| condensin subunit Smc [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515654|gb|EEQ55521.1| condensin subunit Smc [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 1225 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 28/246 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60 + +K L + F+++AS+ L F+ T VG NG GK+NI++A I + + R S Sbjct: 1 MYLKELTLRGFKSFASVTTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R T I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233 Query: 224 IKLSLT 229 + S++ Sbjct: 234 AQRSMS 239 >gi|309810310|ref|ZP_07704148.1| chromosome segregation protein SMC [Dermacoccus sp. Ellin185] gi|308435738|gb|EFP59532.1| chromosome segregation protein SMC [Dermacoccus sp. Ellin185] Length = 1223 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 81/220 (36%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS LV + T VG NG GK+N+++A++++ R R Sbjct: 1 MYVKSLTLKGFKSFASATNLVLEPGITCIVGPNGSGKSNVVDALAWVMGEGSARSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G I T R IN R Sbjct: 61 MDDVIFAGTSGRQPLGRAEVTMTIDNSDGALPIDYTEVTISRTMFRGGGSEYAINRTPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + K + + +D + ERR F++ + R E Sbjct: 121 LLDIQELLSDSGIGKEMHVIVGQGQLDAVLRATPEERRGFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + AR Sbjct: 176 KALRKLDGMEANLTRVADLTAEVRRQLGPLGRQAETARRA 215 >gi|238768522|dbj|BAH66834.1| hypothetical protein [Staphylococcus aureus] Length = 687 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 72/392 (18%), Positives = 135/392 (34%), Gaps = 64/392 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--------GF 56 + I + I FRN+ ++ + F + +G N GK+N+L A+S + G F Sbjct: 1 MYISSVKIKNFRNFDNIDIDFHEGVNVLIGHNNSGKSNLLRALSLIFDGSVRKQLSVEDF 60 Query: 57 RRASYAD---------VT----------RIGSPSFFSTFARVEGMEGLADISIKLETRDD 97 + + V R+ S + + +E + I+ E Sbjct: 61 NNSLTKESLKKEAPKIVISVHITQSENERLMSDELITVSNWLTKLEEPYEARIQYEFFLP 120 Query: 98 RSVRCLQINDVV-IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 + I+ V I +E+ +R ++ +++I+ G + + + D + Sbjct: 121 KDEEKNYIDLVKNIDEKEEIWNLIRSQFIRLYVNKIWVGNPEHQIPIDNDSLNKFDFQFL 180 Query: 157 RRMIDFER-LMRGRNRLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 + D ER + G+N LL + + D S E K+ R E + S LI Sbjct: 181 DAIRDVERDMFSGKNTLLKSVIDFFIDYDIKSDETITEEEQKEKLEERRKEFSDNSSDLI 240 Query: 213 MEYVQKENFPHIK-LSLTGFLDGKFDQSFCALKEEYAK-------KLFDGRKMDSMSRRT 264 ++ + + K LS T + +D+S K + +L + T Sbjct: 241 ETIHKRLDSGNQKILSYTNGIGASYDKSTPDFKGNLTESEIYTVLQLIIKHETGMTLPIT 300 Query: 265 LIGPHRSDLIVD--YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322 G ++LI K + G + + PIL ++E Sbjct: 301 HNGLGYNNLIFMALLLSKMQADSDG-----------------NFLGSNAKVFPILAIEEP 343 Query: 323 SAHLDEDKRNALFRIVT-----DIGSQIFMTG 349 AHL +N + + QIF+T Sbjct: 344 EAHLHPTMQNEFIKFLKNNIREKKVKQIFITT 375 >gi|315656359|ref|ZP_07909248.1| chromosome segregation protein SMC [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492918|gb|EFU82520.1| chromosome segregation protein SMC [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 1201 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 113/283 (39%), Gaps = 36/283 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ + + + T VG NG GK+N+++A++++ + R + Sbjct: 1 MYLKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQ 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 +DV G+ + A V+ +D ++ +E + R + IN +R Sbjct: 61 MSDVIFAGTKTKAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +DRI S +ERR F++ + R + Sbjct: 121 LLDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHR-----QRKD 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R ++ L + + ++ LG + AR + + + + + Sbjct: 176 RALKKLENLAVNLSRVQDLTNEVAKRLGPLGKQAEAARKA--ARVQAELADATARLIADA 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKL--FDGRKMDSMSRRT 264 + + + S A KE+ + +L + R + ++ T Sbjct: 234 VA------QNKEKAGSQTASKEQISAQLADLETRLQELNTKLT 270 >gi|322689473|ref|YP_004209207.1| chromosome partitioning protein Smc [Bifidobacterium longum subsp. infantis 157F] gi|320460809|dbj|BAJ71429.1| chromosome partitioning protein Smc [Bifidobacterium longum subsp. infantis 157F] Length = 1221 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 87/246 (35%), Gaps = 28/246 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A I + + R S Sbjct: 1 MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R T I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233 Query: 224 IKLSLT 229 + S++ Sbjct: 234 AQRSMS 239 >gi|298345307|ref|YP_003717994.1| SMC structural maintenance of chromosomes partitioning protein [Mobiluncus curtisii ATCC 43063] gi|298235368|gb|ADI66500.1| SMC structural maintenance of chromosomes partitioning protein [Mobiluncus curtisii ATCC 43063] Length = 1201 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 113/283 (39%), Gaps = 36/283 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ + + + T VG NG GK+N+++A++++ + R + Sbjct: 1 MYLKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQ 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 +DV G+ + A V+ +D ++ +E + R + IN +R Sbjct: 61 MSDVIFAGTKTKAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +DRI S +ERR F++ + R + Sbjct: 121 LLDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHR-----QRKD 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R ++ L + + ++ LG + AR + + + + + Sbjct: 176 RALKKLENLAVNLSRVQDLTNEVAKRLGPLGKQAEAARKA--ARVQAELADATARLIADA 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKL--FDGRKMDSMSRRT 264 + + + S A KE+ + +L + R + ++ T Sbjct: 234 VA------QNKEKAGSQTASKEQISAQLADLETRLQELNTKLT 270 >gi|304390864|ref|ZP_07372816.1| SMC structural maintenance of chromosomes partitioning protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325747|gb|EFL92993.1| SMC structural maintenance of chromosomes partitioning protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 1201 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 113/283 (39%), Gaps = 36/283 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ + + + T VG NG GK+N+++A++++ + R + Sbjct: 1 MYLKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQ 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 +DV G+ + A V+ +D ++ +E + R + IN +R Sbjct: 61 MSDVIFAGTKTKAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +DRI S +ERR F++ + R + Sbjct: 121 LLDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHR-----QRKD 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R ++ L + + ++ LG + AR + + + + + Sbjct: 176 RALKKLENLAVNLSRVQDLTNEVAKRLGPLGKQAEAARKA--ARVQAELADATARLIADA 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKL--FDGRKMDSMSRRT 264 + + + S A KE+ + +L + R + ++ T Sbjct: 234 VA------QNKEKAGSQTASKEQISAQLADLETRLQELNTKLT 270 >gi|312140446|ref|YP_004007782.1| chromosome segregation protein smc [Rhodococcus equi 103S] gi|311889785|emb|CBH49102.1| chromosome segregation protein Smc [Rhodococcus equi 103S] Length = 1200 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MQDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIEYSEVSITRRMFRDGAGEYEINGNSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLSAILESRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KAVRKLDAMQANLARLTDLTAELRRQLKPLGRQAEVARRA 215 >gi|325675939|ref|ZP_08155622.1| SMC structural maintenance of chromosomes partitioning protein [Rhodococcus equi ATCC 33707] gi|325553177|gb|EGD22856.1| SMC structural maintenance of chromosomes partitioning protein [Rhodococcus equi ATCC 33707] Length = 1200 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MQDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIEYSEVSITRRMFRDGAGEYEINGNSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLSAILESRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KAVRKLDAMQANLARLTDLTAELRRQLKPLGRQAEVARRA 215 >gi|317483516|ref|ZP_07942501.1| chromosome segregation protein SMC [Bifidobacterium sp. 12_1_47BFAA] gi|316915040|gb|EFV36477.1| chromosome segregation protein SMC [Bifidobacterium sp. 12_1_47BFAA] Length = 1225 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 28/246 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60 + +K L + F+++AS+ L F+ T VG NG GK+NI++A I + + R S Sbjct: 1 MYLKELTLRGFKSFASVTTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R T I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233 Query: 224 IKLSLT 229 + S++ Sbjct: 234 AQRSMS 239 >gi|308177250|ref|YP_003916656.1| chromosome segregation protein Smc [Arthrobacter arilaitensis Re117] gi|307744713|emb|CBT75685.1| chromosome segregation protein Smc [Arthrobacter arilaitensis Re117] Length = 1190 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 102/274 (37%), Gaps = 29/274 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKTLTVRGFKSFASATTFEFEPGVTAVVGPNGSGKSNVVDALSWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ A V D + ++ + R L IN R Sbjct: 61 MEDVIFAGTSGRAPLGRAHVSLTIDNTDGQLPIDYAEVTISRTLFRAGGSEYAINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +DRI + +RR F++ + R E Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDRILHATAEDRRGFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + S + Q+A LG + IAR L + + + Sbjct: 176 KTLRKLQAMQGNLDRLEDLSSEVRRQLAPLGRQAKIARRAKTVQL--DVRDAKSRLLADD 233 Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + L+ D + A +++ +L GRK Sbjct: 234 LVTLNNKLAQDIDDESRIQAQQDDANARLERGRK 267 >gi|227547590|ref|ZP_03977639.1| chromosome segregation protein SMC [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227211845|gb|EEI79741.1| chromosome segregation protein SMC [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 1225 Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 28/246 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60 + +K L + F+++AS+ L F+ T VG NG GK+NI++A I + + R S Sbjct: 1 MYLKELTLRGFKSFASVTTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R T I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233 Query: 224 IKLSLT 229 + S++ Sbjct: 234 AQRSMS 239 >gi|240169623|ref|ZP_04748282.1| chromosome partition protein Smc [Mycobacterium kansasii ATCC 12478] Length = 1201 Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAATTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I ERR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEERRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KALRKLDAMAANLARLTDLTTELRRQLKPLGRQAEVARRA 215 >gi|159036827|ref|YP_001536080.1| chromosome segregation protein SMC [Salinispora arenicola CNS-205] gi|157915662|gb|ABV97089.1| chromosome segregation protein SMC [Salinispora arenicola CNS-205] Length = 1198 Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 26/222 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AI+++ + R Sbjct: 1 MHLKSLTVKGFKSFASATTLKLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTAGRAPLGRAEVTLTIDNTDGALPIEYTEVSITRRMFRSGESEYEINGDSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I +D + +RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHIIVGQGRLDGMLHAKPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 + +R + + T + + + Q+ LG + +AR + Sbjct: 176 KALRKLDAMQTNLNRLTDLTAELRRQLKPLGRQAEVARRAAV 217 >gi|291457652|ref|ZP_06597042.1| Smc protein [Bifidobacterium breve DSM 20213] gi|291380705|gb|EFE88223.1| Smc protein [Bifidobacterium breve DSM 20213] Length = 1215 Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 28/242 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A++++ + R S Sbjct: 1 MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R + I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTESNLNRLDDLLREIHRQLGPLGRQARISRRA--DAIQVSVRDAQARIYAED 233 Query: 224 IK 225 + Sbjct: 234 AQ 235 >gi|296454399|ref|YP_003661542.1| chromosome segregation protein SMC [Bifidobacterium longum subsp. longum JDM301] gi|296183830|gb|ADH00712.1| chromosome segregation protein SMC [Bifidobacterium longum subsp. longum JDM301] Length = 1225 Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 28/244 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A++++ + R S Sbjct: 1 MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R T I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233 Query: 224 IKLS 227 + S Sbjct: 234 AQRS 237 >gi|134102508|ref|YP_001108169.1| chromosome segregation ATPase [Saccharopolyspora erythraea NRRL 2338] gi|133915131|emb|CAM05244.1| chromosome segregation ATPase [Saccharopolyspora erythraea NRRL 2338] Length = 1312 Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 81/220 (36%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+L+A+ ++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGEQGAKDLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIEYTEVSITRRMFRDGASEYEINGNSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I E RR ++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGQLANILQAKPDEHRRLIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + S + Q+ LG + IAR Sbjct: 176 KALRKLDAMQANLTRLTDLTSELRRQLKPLGKQAEIARKA 215 >gi|72161059|ref|YP_288716.1| condensin subunit Smc [Thermobifida fusca YX] gi|71914791|gb|AAZ54693.1| condensin subunit Smc [Thermobifida fusca YX] Length = 1183 Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 27/275 (9%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKTLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIR 111 DV G+ S ++ +G I T IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAEVSLTIDNTDGALPIDYSEVTIKRTMFRNGGSEYAINGDPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + ERR ++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDTVLHAGPEERRALIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + + S + + Q+ LG + +AR + + L ++ Sbjct: 176 KALRKLSAMQSNLDRVSDLVAELRRQLKPLGRQAELARRATVIQ-AELRDARLRLLADDI 234 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 + L + + A + +L ++ + Sbjct: 235 VTLREALAKEEADEAEVRARRAAVEAELTQAQERE 269 >gi|302558155|ref|ZP_07310497.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302475773|gb|EFL38866.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 463 Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 97/293 (33%), Gaps = 49/293 (16%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + + RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGRLDSVLHADPLGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 + E ++ E L + A + E K L ++ RR Sbjct: 236 RLREALRAEIADEAAL----------KERKEAAEAELGKALRREADLEDEVRR 278 >gi|315655727|ref|ZP_07908625.1| chromosome segregation protein SMC [Mobiluncus curtisii ATCC 51333] gi|315489791|gb|EFU79418.1| chromosome segregation protein SMC [Mobiluncus curtisii ATCC 51333] Length = 1201 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 91/220 (41%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ + + + T VG NG GK+N+++A++++ + R + Sbjct: 1 MYLKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQ 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 +DV G+ + A V+ +D ++ +E + R + IN +R Sbjct: 61 MSDVIFAGTKTKAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +DRI S +ERR F++ + R + Sbjct: 121 LLDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHR-----QRKD 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 R ++ L + + ++ LG + AR Sbjct: 176 RALKKLENLAVNLSRVQDLTNEVAKRLGPLGKQAEAARKA 215 >gi|256832209|ref|YP_003160936.1| chromosome segregation protein SMC [Jonesia denitrificans DSM 20603] gi|256685740|gb|ACV08633.1| chromosome segregation protein SMC [Jonesia denitrificans DSM 20603] Length = 1172 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 81/207 (39%), Gaps = 26/207 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKTLTVRGFKSFASATRFDFEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + + A V +D + +E + R L IN +R Sbjct: 61 MEDVIFAGTSARPALGRAEVSLTIDNSDGRLPIEFSEVTITRTLFRQGGSEYAINGAPVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + ERR F++ + R E Sbjct: 121 LLDIQELLSDTGLGREMHVIVGQGQLDTVLRATPTERRGFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM 190 + +R + + + + + Q+ Sbjct: 176 KALRKLDSMQGNLLRLADLLAELSRQL 202 >gi|330466271|ref|YP_004404014.1| chromosome segregation protein smc [Verrucosispora maris AB-18-032] gi|328809242|gb|AEB43414.1| chromosome segregation protein smc [Verrucosispora maris AB-18-032] Length = 1204 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 101/274 (36%), Gaps = 27/274 (9%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AI+++ + R Sbjct: 1 MHLKSLTVKGFKSFASATTLKLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTAGRAPLGRAEVTLTIDNTDGALPIEYTEVSITRRMFRSGESEYEINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I +D + +RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHIIVGQGRLDGMLHAKPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + T + + + Q+ LG + +AR + +SL ++ Sbjct: 176 KALRKLDAMQTNLNRLTDLTAELRRQLKPLGRQAEVARRAAVIQ-ASLRDARLRLLADDL 234 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 L T + + + +EE + + + Sbjct: 235 ATLRTTLDREIADETALRQRREEVEAEHTEVQAR 268 >gi|312132519|ref|YP_003999858.1| smc [Bifidobacterium longum subsp. longum BBMN68] gi|311773453|gb|ADQ02941.1| Smc [Bifidobacterium longum subsp. longum BBMN68] Length = 1225 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 28/242 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A I + + R S Sbjct: 1 MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R T I Q+ LG + I+R +A+ + + + Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233 Query: 224 IK 225 + Sbjct: 234 AQ 235 >gi|302865867|ref|YP_003834504.1| chromosome segregation protein SMC [Micromonospora aurantiaca ATCC 27029] gi|315502412|ref|YP_004081299.1| chromosome segregation protein smc [Micromonospora sp. L5] gi|302568726|gb|ADL44928.1| chromosome segregation protein SMC [Micromonospora aurantiaca ATCC 27029] gi|315409031|gb|ADU07148.1| chromosome segregation protein SMC [Micromonospora sp. L5] Length = 1199 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 100/284 (35%), Gaps = 43/284 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AI+++ + R Sbjct: 1 MHLKSLTVKGFKSFASATTLKLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTAGRAPLGRAEVTLTIDNTDGALPIEYTEVSITRRMFRSGESEYEINGDSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I +D + +RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHIIVGQGRLDGMLHAKPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINA--- 207 + +R + + T + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMQTNLNRLTDLTAELRRQLKPLGRQAEVARRAAGIQANLRDARLRLLADDLH 235 Query: 208 -LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 L + + + + E + L G+ L+ A+ Sbjct: 236 TLRTTLDKEIADETALRERRELIEAEHGEVQGRLGELEAALAED 279 >gi|254822114|ref|ZP_05227115.1| chromosome segregation protein SMC [Mycobacterium intracellulare ATCC 13950] Length = 316 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215 >gi|311744092|ref|ZP_07717898.1| SMC structural maintenance of chromosomes partitioning protein [Aeromicrobium marinum DSM 15272] gi|311313222|gb|EFQ83133.1| SMC structural maintenance of chromosomes partitioning protein [Aeromicrobium marinum DSM 15272] Length = 1185 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 26/222 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MYLKSLTLRGFKSFASTTTLEFETGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I T IN R Sbjct: 61 MEDVIFAGTSGRPPLGRAEVVLTIDNSDGALPIEYAEVTISRTMFRNGGSEYAINGTTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + ERR F++ + R E Sbjct: 121 LLDVQDLLSDSGIGREMHVIVGQGQLDSVLRATPEERRGFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 + +R + + + + Q+ LG + +AR + Sbjct: 176 KALRKLDSTQGNLTRLTDVLNELRRQLKPLGRQAEVARRAAV 217 >gi|170781180|ref|YP_001709512.1| putative chromosome structure maintenance protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155748|emb|CAQ00869.1| putative chromosome structure maintenance protein [Clavibacter michiganensis subsp. sepedonicus] Length = 1241 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 118/319 (36%), Gaps = 31/319 (9%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFAQPTTFQFETGVTCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS-IKLETRD---DRSVRCLQINDVVIR 111 DV G+ ++ +G I ++ R IN R Sbjct: 61 MEDVIFAGTSTRGPLGRAEVTLTIDNADGALPIDYTEVAIRRTLFRNGGSEYAINGTSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + ERR F++ + R E Sbjct: 121 LLDVQELLSDSGLGREMHVIVGQGRLDNVLRATPEERRGFIEEAAGILKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV-EMINALSSLIMEYVQKENFP 222 R +R + + I Q+ LG + +AR + + A+ + + Sbjct: 176 RTLRKLEGMQANLTRLNDLAGEIRRQLKPLGRQAEVARQAQTVAAVVRDARARLVADEVV 235 Query: 223 HIKLSLTGFLDGKFDQSFCA--LKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 ++ +L + +++ L+E+ + L R ++ + G R+ ++ Sbjct: 236 TLRRALAEHTRTEEERTTERMVLQEKLDRAVLRSERIVEEQEGDEVDGARRTAFALEQVQ 295 Query: 280 KAITIAHGSTGEQKVVLVG 298 + + S +Q++ L+G Sbjct: 296 ERLR-NLLSLAQQRLALLG 313 >gi|288817659|ref|YP_003432006.1| chromosome segregation ATPase [Hydrogenobacter thermophilus TK-6] gi|288787058|dbj|BAI68805.1| chromosome segregation ATPase [Hydrogenobacter thermophilus TK-6] gi|308751257|gb|ADO44740.1| chromosome segregation protein SMC [Hydrogenobacter thermophilus TK-6] Length = 1154 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 103/273 (37%), Gaps = 38/273 (13%) Query: 7 IKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASY 61 I+ + + F++Y + + VG NG GK+NI +AISF L+ + R + Sbjct: 5 IEKIVVEGFKSYGKGRVEIPLGPGFVGIVGPNGAGKSNIGDAISFALSLATAKTLRAKNL 64 Query: 62 ADVT-RIGSPS----FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVDE 115 + + S S + + EG L D I + + D+ R +IN VIR D Sbjct: 65 SYLIYTKDSDSSHHAYVEVHFKNEGTFPLEDSIIVISRKVDKDGRSIFRINGSVIRERDL 124 Query: 116 --------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERL 165 L ++ L + R +ERR+ ++ + + + ++ + D + Sbjct: 125 KDLLAKAGLYENAYNIVLQGDVIRFLRMTPVERRKLIEEVAGIGEYEEKKQKALADLGEV 184 Query: 166 -MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 ++ R L +E QM L + R L + + + K Sbjct: 185 ELKLREFRL--------LIDEMEVQMERLSEDVRKLRRY--RELENTLRDLHIKLLMKEA 234 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 K + ++ AL EE K+L + R+ Sbjct: 235 KATSQSI------ENLQALIEERKKELLEIREK 261 >gi|311063985|ref|YP_003970710.1| chromosome partition protein [Bifidobacterium bifidum PRL2010] gi|310866304|gb|ADP35673.1| Smc Chromosome partition protein [Bifidobacterium bifidum PRL2010] Length = 1220 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A++++ + R S Sbjct: 1 MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + +I + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNTDHTLNIDYSEVTISRTIFRNGGSEYAINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILRADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 R +R T S I Q+ LG + I+R Sbjct: 176 RALRKLANTETNLSRLDDLLSEIRRQLGPLGRQARISRRA 215 >gi|310287121|ref|YP_003938379.1| chromosome segregation protein SMC [Bifidobacterium bifidum S17] gi|309251057|gb|ADO52805.1| chromosome segregation protein SMC [Bifidobacterium bifidum S17] Length = 1220 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A++++ + R S Sbjct: 1 MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + +I + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNTDHTLNIDYSEVTISRTIFRNGGSEYAINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILRADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 R +R T S I Q+ LG + I+R Sbjct: 176 RALRKLANTETNLSRLDDLLSEIRRQLGPLGRQARISRRA 215 >gi|224282661|ref|ZP_03645983.1| Chromosome segregation ATPase [Bifidobacterium bifidum NCIMB 41171] gi|313139819|ref|ZP_07802012.1| chromosome segregation ATPase [Bifidobacterium bifidum NCIMB 41171] gi|313132329|gb|EFR49946.1| chromosome segregation ATPase [Bifidobacterium bifidum NCIMB 41171] Length = 1220 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A++++ + R S Sbjct: 1 MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + +I + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNTDHTLNIDYSEVTISRTIFRNGGSEYAINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D I R F++ + R E Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILRADPSGHRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 R +R T S I Q+ LG + I+R Sbjct: 176 RALRKLANTETNLSRLDDLLSEIRRQLGPLGRQARISRRA 215 >gi|296109742|ref|YP_003616691.1| chromosome segregation protein SMC [Methanocaldococcus infernus ME] gi|295434556|gb|ADG13727.1| chromosome segregation protein SMC [Methanocaldococcus infernus ME] Length = 1142 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 99/292 (33%), Gaps = 44/292 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 +K + + F+++ SL L T VG NG GK+NI++AI F+ S R R ++ Sbjct: 2 LKRIELKNFKSFKSLSLEIPKGFTAIVGPNGSGKSNIVDAILFVLGKSSARKLRANKFSS 61 Query: 64 VTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + + E IS K++ + + ++ + E+ Sbjct: 62 LINYHKGRKAEYAEVTLFFESNGEEFGISRKVKKSGETAYYFIKNGEKRRLTKKEIIDFF 121 Query: 121 R-------ISWLVPSMDRIFSGLSMERRRFLD-----------------------RMVFA 150 R + I + +ERR+ +D ++ Sbjct: 122 RRLKLLGDNIISQGDLLNIINMSPIERRKIIDELSGVSEFDEKKKKAEEELKKARELIEI 181 Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210 ID R + +R L + ++ ++ + E ++ R++ +N + Sbjct: 182 IDARISEVKSNLDR--------LKKEKEEAERYLELKQLLKEARYELTKKRIDYLNLEIN 233 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 + E ++K + + + + +KL D +D ++ Sbjct: 234 NLKERIEKLEREKEEKIKKLKEIEEEIKKKKEEISKVLEKLKDSEVLDIYNK 285 >gi|311898545|dbj|BAJ30953.1| putative chromosome segregation protein SMC [Kitasatospora setae KM-6054] Length = 1222 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 26/210 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I T +N V R Sbjct: 61 MEDVIFAGTSGRPPLGRAEVSLTIDNTDGALPIDYSEVTITRTMFRNGGSEYALNGTVCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 + +R + + T + + Q+ L Sbjct: 176 KALRKLDAMQTNLNRVQDLVAELRRQLGPL 205 >gi|256379946|ref|YP_003103606.1| chromosome segregation protein SMC [Actinosynnema mirum DSM 43827] gi|255924249|gb|ACU39760.1| chromosome segregation protein SMC [Actinosynnema mirum DSM 43827] Length = 1194 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+L+A+ ++ +G R Sbjct: 4 VHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGTQGAKDLRGGK 63 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 64 MEDVIFAGTSGRAPLGRAEVTLTIDNADGALPIEYTEVSITRRMFREGATEYEINGSSCR 123 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I ERR F++ + R E Sbjct: 124 LMDIQELLSDSGIGREMHVIVGQGQLSAILESKPEERRAFIEEAAGVLKHR-----KRKE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + Q+ LG + IAR Sbjct: 179 KALRKLEAMQANLTRLTDLTAELRRQLKPLGKQAEIARRA 218 >gi|229491402|ref|ZP_04385226.1| chromosome segregation protein SMC [Rhodococcus erythropolis SK121] gi|229321687|gb|EEN87484.1| chromosome segregation protein SMC [Rhodococcus erythropolis SK121] Length = 1195 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTSGRAPLGRAEVTLTIDNADGALPIEYSEVSITRRMFRDGAGEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLAAILESRPEDRRAFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + S + + Q+ LG + +AR Sbjct: 176 KAVRKLDSMQANLARLSDLTAELRRQLKPLGRQAEVARRA 215 >gi|320093874|ref|ZP_08025715.1| hypothetical protein HMPREF9005_0327 [Actinomyces sp. oral taxon 178 str. F0338] gi|319979191|gb|EFW10693.1| hypothetical protein HMPREF9005_0327 [Actinomyces sp. oral taxon 178 str. F0338] Length = 448 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 103/289 (35%), Gaps = 48/289 (16%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++A++++ R R + Sbjct: 1 MYLKSLTLRGFKSFASATTLRLEPGITCVVGPNGSGKSNVVDALAWVMGEQGARAMRGGN 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 ADV G+ S ++ +GL DI T R QIN R Sbjct: 61 MADVIFAGAGSRPALGRAQADLTIDNSDGLLDIEYSEVTISRTLFRGGGSEYQINGAPAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I S ERR F++ + R E Sbjct: 121 LLDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE------AQMAEL--------GVKINIARVEMINA-- 207 R ++ D++ ++ Q+ L + ARV A Sbjct: 176 RALK------KLADMDANLVRVLDLTNEIHRQLGPLARQARTARRAHVIQARVRDARARL 229 Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 L+ ++ + + T + + + +E A R+ Sbjct: 230 LADDLVAARDRLDAHSASEEATARRRAQLEGELASAREGLAALEDQERQ 278 >gi|226305924|ref|YP_002765884.1| chromosome partition protein SMC [Rhodococcus erythropolis PR4] gi|226185041|dbj|BAH33145.1| chromosome partition protein SMC [Rhodococcus erythropolis PR4] Length = 1195 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTSGRAPLGRAEVTLTIDNADGALPIEYSEVSITRRMFRDGAGEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLAAILESRPEDRRAFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + S + + Q+ LG + +AR Sbjct: 176 KAVRKLDSMQANLARLSDLTAELRRQLKPLGRQAEVARRA 215 >gi|315445097|ref|YP_004077976.1| condensin subunit Smc [Mycobacterium sp. Spyr1] gi|315263400|gb|ADU00142.1| condensin subunit Smc [Mycobacterium sp. Spyr1] Length = 1194 Score = 74.6 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 100/283 (35%), Gaps = 28/283 (9%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTLTIDNSDNALPIEYSEVSITRRMFRDGAGEYEINGSRCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + + + + + I +RR F++ + R E Sbjct: 121 LADVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + + + + Q+ LG + +AR + + + + + Sbjct: 176 KAVRKLDSMAANLARLTDLTTELRRQLKPLGRQAEMARRA--QTIQADLRDARLRLAADD 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266 + F D ++ + + + R + + T + Sbjct: 234 LVARKAEFDDTDQAETTLRREHDELTERLQERAAELDAHETAV 276 >gi|126664800|ref|ZP_01735784.1| ATPase [Marinobacter sp. ELB17] gi|126631126|gb|EBA01740.1| ATPase [Marinobacter sp. ELB17] Length = 429 Score = 74.6 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 16/139 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY- 61 + +K + + FR + + + VG NG GKT +L+AIS + + GFR Sbjct: 1 MNLKEIKLKNFRCFEEQSFQLHPEFNLIVGINGSGKTALLDAISVVIATWLLGFRNRPDK 60 Query: 62 ----------ADVTRIGSPSF---FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 V + P F + + EG D+ + + Sbjct: 61 KSLSTGDVRLKYVVKNDEPQFIESWPVTVKAEGTINDKDVRWERSKHSESGNTRYGNASE 120 Query: 109 VIRVVDELNKHLRISWLVP 127 +I + +L+ L +P Sbjct: 121 LISLAHDLDGKLGEDVSLP 139 >gi|317125425|ref|YP_004099537.1| condensin subunit Smc [Intrasporangium calvum DSM 43043] gi|315589513|gb|ADU48810.1| condensin subunit Smc [Intrasporangium calvum DSM 43043] Length = 1197 Score = 74.6 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 92/269 (34%), Gaps = 33/269 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++A++++ + R Sbjct: 1 MYVKSLTLKGFKSFASATHLRLEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I T IN R Sbjct: 61 MEDVIFAGTAGRAPLGRAEVALTIDNTDGALPIDYTEVTIARTMFRNGGSDYSINGTPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + ERR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDTVLRATPEERRGFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYV 216 R +R + I Q+ LG + AR + L L + V Sbjct: 176 RALRKLETMEANLTRVHDLTGEIRRQLGPLGRQAETARRAAVIQTDARDARLRLLADDLV 235 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKE 245 Q + +++ L + + A+ E Sbjct: 236 QLTSTLEQEVADESALIQRRTEVEEAMAE 264 >gi|145224767|ref|YP_001135445.1| chromosome segregation protein SMC [Mycobacterium gilvum PYR-GCK] gi|145217253|gb|ABP46657.1| condensin subunit Smc [Mycobacterium gilvum PYR-GCK] Length = 1194 Score = 74.6 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 100/283 (35%), Gaps = 28/283 (9%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTLTIDNSDNALPIEYSEVSITRRMFRDGAGEYEINGSRCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + + + + + I +RR F++ + R E Sbjct: 121 LADVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + + + + Q+ LG + +AR + + + + + Sbjct: 176 KAVRKLDSMAANLARLTDLTTELRRQLKPLGRQAEMARRA--QTIQADLRDARLRLAADD 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266 + F D ++ + + + R + + T + Sbjct: 234 LVARKAEFDDTDQAETTLRREHDELTERLQERAAELDAHETAV 276 >gi|224477807|ref|YP_002635413.1| hypothetical protein Sca_2325 [Staphylococcus carnosus subsp. carnosus TM300] gi|222422414|emb|CAL29228.1| hypothetical protein SCA_2325 [Staphylococcus carnosus subsp. carnosus TM300] Length = 392 Score = 74.6 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 128/383 (33%), Gaps = 57/383 (14%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I + ++ FR++ + L F+ FVG+N GKT + +A+ F+ G+ Sbjct: 1 MYISNMKLTNFRSFNGNNELQFNDGLNFFVGNNNCGKTTVFKAVEFIQNGK--------- 51 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 F + E +I++++ D + N EL K+ Sbjct: 52 ----DKSEFITIGKENE------EIAVEITLSGDDIEGIVNNN--------ELKKYKNYI 93 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 + I +R + + + + + N+ D + Sbjct: 94 YEKNETLNI-----TIKRSSKNDSIVQNGRKKDLDIKNIRTWNNEENQFENPTGIDKTIN 148 Query: 184 SSIEAQMAELGVKINIARV--------EMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 + +AQ +K R ++IN+++ K IK F D Sbjct: 149 ALFDAQFVYSDIKNEEYRDFGKTKVMGKLINSITKDFQ--HSKVYKDLIKAHEKAFGDEG 206 Query: 236 FDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLI----VDYCDKAITIAHGS-- 288 S ++E K L + + + + L P ++ + ++ + IT Sbjct: 207 LKSSLHDTEKELQKILGEQYGEAEVEFKFEL--PDMNNFLKHGTINLTENNITTEVSEKG 264 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIF 346 TG Q+ + + + ++ +++ + +DE L + + I +Q+F Sbjct: 265 TGMQRALAMSLIQVYSNIVNKENAKQLLFFIDEPETFLHPKAQAKIINAFRKISRETQVF 324 Query: 347 MTGTDKSVFDSLN---ETAKFMR 366 +T + + + K + Sbjct: 325 ITTHSPYLLKQFDNDIDDIKIFK 347 >gi|254776224|ref|ZP_05217740.1| chromosome segregation protein SMC [Mycobacterium avium subsp. avium ATCC 25291] Length = 576 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215 >gi|300783823|ref|YP_003764114.1| chromosome segregation ATPase [Amycolatopsis mediterranei U32] gi|299793337|gb|ADJ43712.1| chromosome segregation ATPase [Amycolatopsis mediterranei U32] Length = 1200 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 37/285 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+L+A+ ++ +G R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGTQGAKDLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTAGRAPLGRAEVTLTIDNADGALPIEYSEVSITRRMFRDGASEYEINGDRCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I ERR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGQLSAILESKPEERRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----------INALSSLIM 213 + +R + + + Q+ LG + IAR + L+ ++ Sbjct: 176 QTLRKLANMQGNLDRLGDLTTELRRQLKPLGKQAEIARKAQSVQSELRDSRLRLLADDLV 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 + +Q + E +L D Sbjct: 236 TQRTAIAREEADEKSARQRRAEVEQHLEIVSAE-ETELEASLAED 279 >gi|302525132|ref|ZP_07277474.1| chromosome segregation protein SMC [Streptomyces sp. AA4] gi|302434027|gb|EFL05843.1| chromosome segregation protein SMC [Streptomyces sp. AA4] Length = 1208 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 26/221 (11%) Query: 4 RIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRA 59 + +K L + F+++AS L F+ T VG NG GK+N+L+A+ ++ +G R Sbjct: 8 HVHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGTQGAKDLRGG 67 Query: 60 SYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVI 110 DV G+ ++ +G I + R R +IN Sbjct: 68 KMEDVIFAGTAGRAPLGRAEVTLTIDNADGALPIEYAEVSITRRMFRDGASEYEINGDRC 127 Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 R++D + + + + + I ERR F++ + R Sbjct: 128 RLMDVQELLSDSGIGREMHVIVGQGQLSAILESKPEERRAFIEEAAGVLKHR-----KRK 182 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 E+ +R N + + + + Q+ LG + IAR Sbjct: 183 EQTLRKLNNMQGNLDRLTDLTTELRRQLKPLGKQAEIARKA 223 >gi|255326581|ref|ZP_05367658.1| chromosome segregation protein SMC [Rothia mucilaginosa ATCC 25296] gi|255296321|gb|EET75661.1| chromosome segregation protein SMC [Rothia mucilaginosa ATCC 25296] Length = 1102 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 95/288 (32%), Gaps = 33/288 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + + L + F+++AS F VG NG GK+N+L+A++++ + R S Sbjct: 1 MHLMSLTLRGFKSFASATTFEFTPGINAVVGPNGSGKSNVLDALAWVMGEQGAKSLRGGS 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-----------------SVRCL 103 DV GS S G A +++ + D Sbjct: 61 MKDVIFAGSGEAGSGDGAQRAPLGRAKVTLTFDNSDGTLSIPADRVQISRTMFRSGGSEY 120 Query: 104 QINDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 +IN R+ D L + + + +D + + +RR +++ + + Sbjct: 121 EINGSPARLADIQDLLSEAGLGQQMHVLVGQGQLDAVLHATAQQRRDMIEQAAGVVK--Y 178 Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--VEMINALSSLIM 213 RRR R + +T + S ++E AR I L ++++ Sbjct: 179 RRRQEKTSRKLESVASNVTRLSDLVAELDSQLQPLSEQAESAATARQLQARIRQLEAVLL 238 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 +L ++G + E A+ + + Sbjct: 239 ARQLGVLQAEQAQALASEVEGTRRAETLKEQLEAARAASAKHQQEQNR 286 >gi|320534862|ref|ZP_08035279.1| RecF/RecN/SMC protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320132960|gb|EFW25491.1| RecF/RecN/SMC protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 395 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 26/210 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L I F+++AS L + T VG NG GK+N+++A++++ + R S Sbjct: 1 MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 ADV G+ S ++ +G+ I + + +IN R Sbjct: 61 MADVIFAGAGSRPALGRAEVSLTIDNTDGVLPIDYTEVTISRTLFRGGGSEYRINGSPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + S +RR F++ + R E Sbjct: 121 LLDVQELLSDTGLGRQMHVIVGQGQLDAVLSATPEDRRGFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 R +R + + S + Q+ L Sbjct: 176 RALRKLESMAADLARVSDLAQELRRQLGPL 205 >gi|254392453|ref|ZP_05007633.1| chromosome segregation protein [Streptomyces clavuligerus ATCC 27064] gi|197706120|gb|EDY51932.1| chromosome segregation protein [Streptomyces clavuligerus ATCC 27064] Length = 665 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 101/317 (31%), Gaps = 50/317 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 8 VHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 67 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 68 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 127 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 128 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 182 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMIN---- 206 + +R + + Q+ LG + AR+ ++ Sbjct: 183 KALRKLESMKANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 242 Query: 207 ALSSLIMEYVQKE-------NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 L + + E +L + + + AL + ++ Sbjct: 243 RLQRALRAEIADEAALKARKEAAEARLKAALAREAELEGEVRALVPRLQRAQQTWYELSQ 302 Query: 260 MSRRTLIGPHRSDLIVD 276 ++ RT ++ V Sbjct: 303 LAERTRGTVSLAEARVK 319 >gi|118466622|ref|YP_882949.1| chromosome segregation protein SMC [Mycobacterium avium 104] gi|118167909|gb|ABK68806.1| chromosome segregation protein SMC [Mycobacterium avium 104] Length = 1196 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215 >gi|54026138|ref|YP_120380.1| putative chromosome segregation protein [Nocardia farcinica IFM 10152] gi|54017646|dbj|BAD59016.1| putative chromosome segregation protein [Nocardia farcinica IFM 10152] Length = 1203 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 101/268 (37%), Gaps = 37/268 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGL-----ADISIKLETRDDRSVRCLQINDVVI 110 DV G+ ++ +G A++SI D + +IN Sbjct: 61 MQDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIDYAEVSITRRMFRDGAG-EYEINGNSC 119 Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 R++D + + + + + I +RR F++ + R Sbjct: 120 RLMDVQELLSDSGIGREMHVIVGQGQLSAILESRPEDRRAFVEEAAGVLKHR-----KRK 174 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 E+ +R + + + + Q+ LG R + + + ++ Sbjct: 175 EKAVRKLEAMQANLARLTDLTTELRRQLKPLG------RQAEVARRAQTVQADLRD---A 225 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKK 250 ++L+ + + + + KE YA++ Sbjct: 226 RLRLAADDLVTRRAELASQQSKEAYARE 253 >gi|305663212|ref|YP_003859500.1| SMC domain protein [Ignisphaera aggregans DSM 17230] gi|304377781|gb|ADM27620.1| SMC domain protein [Ignisphaera aggregans DSM 17230] Length = 492 Score = 74.2 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +R+ ++ + I F++ L L + VG N GKTNILEA+ FL Sbjct: 12 DRVFVRRIYIENFKSIKHLELELSPGVNVLVGPNASGKTNILEALDFL 59 >gi|239928699|ref|ZP_04685652.1| chromosome associated protein [Streptomyces ghanaensis ATCC 14672] Length = 499 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 99/296 (33%), Gaps = 49/296 (16%) Query: 2 TNRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFR 57 ++ + +K L + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 12 SDGVHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLR 71 Query: 58 RASYADVTRIGSP-----SFFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDV 108 DV G+ ++ +G I QIN Sbjct: 72 GGKMEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYSEVTITRIMFRNGGSEYQINGD 131 Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 R++D + + + + +D + M RR F++ + R Sbjct: 132 TCRLLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----K 186 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINA 207 E+ +R + + + Q+ LG + AR+ ++ Sbjct: 187 RKEKALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLAD 246 Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 + E ++ E L + A + E K L ++ RR Sbjct: 247 DLVRLREALEAEIADEAAL----------KERKEAAERELGKALRREALLEEEVRR 292 >gi|302522142|ref|ZP_07274484.1| chromosome segregation protein SMC [Streptomyces sp. SPB78] gi|302431037|gb|EFL02853.1| chromosome segregation protein SMC [Streptomyces sp. SPB78] Length = 1298 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 97/279 (34%), Gaps = 29/279 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I T QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTIARTMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEASGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFP 222 + +R + + + Q+ LG + +AR + + + + ++ + Sbjct: 176 KALRKLDAMRANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLSDD 233 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + L + + + KE L ++ Sbjct: 234 LVTLRRALDAEVADEAALKERKEAAESALKTALAREARL 272 >gi|145593842|ref|YP_001158139.1| chromosome segregation protein SMC [Salinispora tropica CNB-440] gi|145303179|gb|ABP53761.1| condensin subunit Smc [Salinispora tropica CNB-440] Length = 1198 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 26/222 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AI+++ + R Sbjct: 1 MHLKSLTVKGFKSFASATTLKLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTAGRAPLGRAEVTLTIDNTDGALPIEYTEVSITRRMFRSGESEYEINGDSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I +D + +RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHIIVGQGRLDGMLHAKPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 + +R + + T + + Q+ LG + +AR + Sbjct: 176 KALRKLDAMQTNLNRLTDLTVELRRQLKPLGRQAEVARRAAV 217 >gi|323187168|gb|EFZ72482.1| hypothetical protein ECRN5871_4551 [Escherichia coli RN587/1] Length = 578 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 66/389 (16%), Positives = 124/389 (31%), Gaps = 76/389 (19%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + I FR+ L +G GKT IL+AI R R S++D Sbjct: 2 VRVCKVEIRNFRSIRLLTWQPSPGLNCLIGPGDSGKTTILDAIDLCLGAR--RNVSFSD- 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FF G++ ISI L V ++ ++ +L+ Sbjct: 59 -----TDFF-------GLDVSQPISITLTLGSLPDV---------LKTMETYGNYLQA-- 95 Query: 125 LVPSMDRIFSGLSME-------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 S + R +D + +P E L RN + Sbjct: 96 -FNSATGLIQEEPQLGLETVLCLRLSVDSEL---EPNWTLVSQRAEALGHERNLAWKDR- 150 Query: 178 FDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 A++ ++ AR ++N L+ E P++ L+ Sbjct: 151 -----LLIAPARLGTYASSNLSWARGSVLNRLT---------EERPNLGAELSNAARQAR 196 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGS----- 288 + A L + + + G ++ L V D AI + + + Sbjct: 197 TSFGGQASAQLAATLDVVTQKANELGVPVGGQTQALLDAHAVSIGDGAIALHNAAGVPLR 256 Query: 289 ---TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343 TG ++++ G+ A A+ A + L+DE+ L+ + L + + Sbjct: 257 SLGTGSSRLLVAGMQRAAAQ-------RASVALVDEVEYGLEPHRLTRLLNSLGARETPP 309 Query: 344 --QIFMTGTDKSVFDSLNETAKFMRISNH 370 Q+F+T LN + + H Sbjct: 310 PLQVFLTTHSPVAVRELNGN-QLFVVRGH 337 >gi|307353061|ref|YP_003894112.1| SMC domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156294|gb|ADN35674.1| SMC domain protein [Methanoplanus petrolearius DSM 11571] Length = 642 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 59/398 (14%), Positives = 119/398 (29%), Gaps = 62/398 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFD--AQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRAS 60 + + L I+ FR Y + + D T+FVG+N GKT I++AI + R + + Sbjct: 1 MHLSNLKITNFRCYDEIGIDLDIKKGLTVFVGENDSGKTAIIDAIRYAIGTRDQEWNKIK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADI----SIKLETRDDRSVRCLQINDVVIRVVDEL 116 D + + E + + E + L N + + Sbjct: 61 DTDFYNEDTSREIKITCKFEELSQNESGIFLQYLTYEQTGESVKEVLYFNWSAKKKIIGK 120 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL---- 172 + + I + F + + + + + D E M R Sbjct: 121 REFISTEISS----GIKADGPS----FNEDTRELLKTTYLKPLRDAENAMSSRKNSRLAQ 172 Query: 173 -LTEGYFDSSWCSSIEAQ----------MAELGVKINIARVEMINALSSLIMEYVQKENF 221 L S E + +A L + I + + K Sbjct: 173 ILKNIDSIKSGKDKYEKESDLKDLSVLGIANLADSLLINHKGIKETKEQIDNNLSDKFLL 232 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 K+ + GK + + LK+ K + K + S +G + Sbjct: 233 KQDKIQSNIEIKGKTNNTDQQLKQMLEKLTLNIEKEELCSGTLGLGTNN----------- 281 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-- 339 ++ + L+ +LLL+E +H+ ++ + + + Sbjct: 282 ------------LLYMAC---ELLLLQQEDDGNKMLLLEEPESHIHVQRQLKILKSLQNE 326 Query: 340 --DIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 QI T T + S+ + + I N +A + Sbjct: 327 AIKNNVQIL-TTTHSPILASVIKLENVVLIQNGKAFSL 363 >gi|297626604|ref|YP_003688367.1| Chromosome partition protein Smc [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922369|emb|CBL56941.1| Chromosome partition protein Smc [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1181 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 105/283 (37%), Gaps = 29/283 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+NI++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASATTLAFEPGITAIVGPNGSGKSNIVDALAWVMGEQGAKHLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G+ I T R IN R Sbjct: 61 MDDVIFAGTAGRPPLGRAEVTLTIDNTDGVLPIDYTEVTISRTLFRAGGSEYAINGHTAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D+I RR F++ + R R+ Sbjct: 121 LLDVQELLSDTGMGREMHVIVGQGQLDQILQATPEIRRGFIEEAAGVLKHRRRKEKAA-R 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS-SLIMEYVQKENFP 222 +L R L S S I Q+ LG + +AR + + ++ Sbjct: 180 KLESTRQNL----ERLSDLISEIRRQLKPLGRQAAVARKAAVVQAELRDARSRLLADDLT 235 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 +L+L + + Q L+ + +L R ++ + + L Sbjct: 236 AARLALASEQENQAGQE--KLRADARARLEQARSREAEAEQAL 276 >gi|239982555|ref|ZP_04705079.1| chromosome segregation protein [Streptomyces albus J1074] gi|291454397|ref|ZP_06593787.1| chromosome segregation protein SMC [Streptomyces albus J1074] gi|291357346|gb|EFE84248.1| chromosome segregation protein SMC [Streptomyces albus J1074] Length = 553 Score = 73.8 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 96/290 (33%), Gaps = 42/290 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++AS L F+ T VG NG GK+N+++A+S++ + R Sbjct: 1 MHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210 + +R + + + Q+ LG + AR+ ++ Sbjct: 176 KALRKLDAMQANLARVQDLTEELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235 Query: 211 LIMEYVQKENFPHIKLSL---TGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 + + E +L T + K Q A E ++L + Sbjct: 236 TLTRALSAEIADEAELKRRRDTAEAELKAAQRREATLEGEVRRLAPRLQR 285 >gi|296171398|ref|ZP_06852731.1| SMC structural maintenance of chromosomes partitioning protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894173|gb|EFG73932.1| SMC structural maintenance of chromosomes partitioning protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 373 Score = 73.8 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGASEYEINGASCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215 >gi|256824939|ref|YP_003148899.1| condensin subunit Smc [Kytococcus sedentarius DSM 20547] gi|256688332|gb|ACV06134.1| condensin subunit Smc [Kytococcus sedentarius DSM 20547] Length = 1217 Score = 73.8 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 26/211 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + + L + F+++AS L + T VG NG GK+N+++A++++ + R Sbjct: 1 MYVTSLTLKGFKSFASSTKLELEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G I T R IN R Sbjct: 61 MEDVIFAGTSGRAPLGRAEVAMTIDNTDGALPIDYSEVTISRTMFRSGGSEYAINGTPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + ERR F++ + R E Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 + +R + + + + I Q+ LG Sbjct: 176 KALRKLDAMEGDLARVRDLTAEIRRQLGPLG 206 >gi|119717497|ref|YP_924462.1| condensin subunit Smc [Nocardioides sp. JS614] gi|119538158|gb|ABL82775.1| condensin subunit Smc [Nocardioides sp. JS614] Length = 1188 Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASSTTLQLEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G I T R IN R Sbjct: 61 MEDVIFAGTSGRPPLGRAEVLLTIDNSDGALPIEYAEVTISRTMFRSGGSEYAINSQPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I +RR F++ + R E Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDSILHATPEDRRGFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + I Q+ LG + +AR Sbjct: 176 KALRKLDSTEGNLTRLGDLLTEIRRQLKPLGRQAEVARKA 215 >gi|188576462|ref|YP_001913391.1| hypothetical protein PXO_00630 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520914|gb|ACD58859.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 535 Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 63/390 (16%), Positives = 119/390 (30%), Gaps = 66/390 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + I F+++ L L ++ + VGDN VGK+ +LEAI + G+ R ++ Sbjct: 10 MPIERIVIDNFKSFRHLDLPLNSHMNLVVGDNEVGKSTLLEAIHAVVTGQLHGRNLAYEL 69 Query: 65 T--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 T P+ A ++ + I +E + L Sbjct: 70 TPYLFHQPTVNEYLAALQAGTPASPPRIAIEAYLGSDA-----------ALASLRGTNNS 118 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRGRNRLLTEGY 177 + R+ L+ + R + + P + + Sbjct: 119 LGFDTAGIRLLVELNDDYREEFNAYLQQHQGVVSLPVEYYTVRWYSFA--HNGVTARSIP 176 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 FDS+ + G+K I + + Q+ + + LS + Sbjct: 177 FDSTIIDT-------HGIKTLSGADRYIAGIIEQALTPAQRVS---LSLSFRRMRQSFSE 226 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRR--------------TLIGPHRSDLIVDYCDKAIT 283 ++ A Y + D R T + P+ +L K Sbjct: 227 EADVAAINAYLTE----HTGDISHRTLTVGVDTSPRSTWETSLSPYLDELPFTQAGK--- 279 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG- 342 GEQ V + LA + G A +LL++E HL L + + Sbjct: 280 ------GEQ--SAVKMKLA-----MHAAGAAHVLLIEEPENHLSFSSMTQLIDKIAALSS 326 Query: 343 -SQIFMTGTDKSVFDSLNETAKFMRISNHQ 371 Q+ + V + L + + Q Sbjct: 327 TQQVVIATHSSFVLNKLGVDNVILFSAQGQ 356 >gi|21902529|ref|NP_663774.1| Bartomin [Rattus norvegicus] gi|21717411|dbj|BAC02935.1| barmotin [Rattus norvegicus] Length = 1184 Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 56/293 (19%), Positives = 105/293 (35%), Gaps = 34/293 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +K+K L IS F+++A + F T VG NG GK+NI+EAI ++ + R Sbjct: 1 MKLKSLEISGFKSFADKTVIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 AD+ G+ + + A V D IK + + R R L QIN V R Sbjct: 61 MADIIFGGTNTRPALNRAEVSMTFDNTDHYIKSDFSEIRITRKLYRSGESSYQINGVESR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ +RR ++ + ++++ + Sbjct: 121 LRDIHELFMDTGLGRESFSIISQGRVESIFNAKPEDRRSIIEEVAGVY--QYKQNKQRAQ 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN-----IARVEMINALSSLIMEYVQK 218 + ++ L +AE + AR + ++ L + + Sbjct: 179 KELQQTTDNLARVADIIHEIEGRIEPLAEQSAQATDYIAQKARFDTLDRLRLALTQQALV 238 Query: 219 ENFPHIKLSLT------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 E LT D L ++ ++ + + D++ L Sbjct: 239 EQKAQATAELTRQDAQVNHTKTTVDALNQTLAQKRQARVNEQKTRDALQATIL 291 >gi|238063287|ref|ZP_04607996.1| chromosome segregation protein SMC [Micromonospora sp. ATCC 39149] gi|237885098|gb|EEP73926.1| chromosome segregation protein SMC [Micromonospora sp. ATCC 39149] Length = 724 Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 102/275 (37%), Gaps = 29/275 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AI+++ + R Sbjct: 1 MYLKSLTVKGFKSFASATTLKLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTAGRAPLGRAEVTLTIDNTDGALPIEYTEVSITRRMFRSGESEYEINGDSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I +D + +RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHIIVGQGRLDGMLHAKPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + T + + + Q+ LG + +AR A+ + + + + Sbjct: 176 KALRKLDAMQTNLNRLTDLTAELRRQLKPLGRQAEVARRA--AAIQANLRDARLRLLADD 233 Query: 224 IK-LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 + L T + + + ++E + + + Sbjct: 234 LHTLRATLNREIADESAARERRQEVEAEHSEVQAR 268 >gi|38234115|ref|NP_939882.1| putative chromosome partition protein [Corynebacterium diphtheriae NCTC 13129] gi|28375459|emb|CAD66593.1| SMC protein [Corynebacterium diphtheriae] gi|38200377|emb|CAE50065.1| Putative chromosome partition protein [Corynebacterium diphtheriae] Length = 1161 Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 96/274 (35%), Gaps = 33/274 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A+S++ + R Sbjct: 1 MYLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALSWVMGEQGAKNLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALPIEYTEVSVTRRMFRDGGGEYEINGHKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + +I +RR F++ + R E Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEDRRAFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + R + + D + + Q+ L + AR + S + + + Sbjct: 176 KA--QRKLVGMQANLDRLSDLTAELGKQLKPLARQAEAARKA--ATIQSEVRDARLRIAG 231 Query: 222 PHIKLSLTGFLDGKF-DQSFCALKEEYAKKLFDG 254 I + D + S EE ++L + Sbjct: 232 YQIHSLASSLKDAQSHHDSIAEKLEEVTEQLEEA 265 >gi|253584165|ref|ZP_04861363.1| nuclease sbcCD subunit C [Fusobacterium varium ATCC 27725] gi|251834737|gb|EES63300.1| nuclease sbcCD subunit C [Fusobacterium varium ATCC 27725] Length = 448 Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 102/281 (36%), Gaps = 27/281 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI +++ +R + L + FD+ + +G+NG GK++ILEAI + R + + Sbjct: 1 MKINRIHLENYRIHDKLDVEFDSGINLLLGENGKGKSSILEAIGYALFDSELRGGNQREA 60 Query: 65 TRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRS--------VRCLQINDVVIRVVD 114 + G S F ++G + + I T + + +I ++ D Sbjct: 61 IKYGKKSAKIEIEFTGIDGEDYIVTRKIPGSTSIYKKDNPDFQLIGKEDRIRELCGIKGD 120 Query: 115 ELNKHLRISWL-VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 + + F ER + ++ VF D +++ + R NR Sbjct: 121 LKGIYDNVIVAKQNEFISSFKEKDNEREKIFNK-VFNTD-IYKKIYEGYSR--DAVNRYE 176 Query: 174 TEGYFDSSWCSSIEAQMAELG------------VKINIARVEMINALSSLIMEYVQKENF 221 + + S +I M + K + + ++N S + E++ N Sbjct: 177 KDIEIERSSMENIAEIMEDPADIKEKLEFEKGRAKEYNSSLALLNEEKSKVKEFLNSYNA 236 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 +I++ +S EE+ K ++ + + Sbjct: 237 LNIEIEKLTGEINALSESIKNKNEEFTKVANSIKESEISEK 277 >gi|183981798|ref|YP_001850089.1| chromosome partition protein Smc [Mycobacterium marinum M] gi|183175124|gb|ACC40234.1| chromosome partition protein Smc [Mycobacterium marinum M] Length = 1200 Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215 >gi|148272541|ref|YP_001222102.1| putative chromosome segregation ATPase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830471|emb|CAN01406.1| putative chromosome segregation ATPase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 1251 Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 52/319 (16%), Positives = 118/319 (36%), Gaps = 31/319 (9%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFAQPTTFQFETGVTCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS-IKLETRD---DRSVRCLQINDVVIR 111 DV G+ ++ +G I ++ R IN R Sbjct: 61 MEDVIFAGTSTRGPLGRAEVTLTIDNADGALPIDYTEVAIRRTLFRNGGSEYAINGTSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + ERR F++ + R E Sbjct: 121 LLDVQELLSDSGLGREMHVIVGQGRLDNVLRATPEERRGFIEEAAGILKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV-EMINALSSLIMEYVQKENFP 222 R +R + + I Q+ LG + +AR + + A+ + + Sbjct: 176 RTLRKLEGMQANLTRLNDLAGEIRRQLKPLGRQAEVARQAQTVAAVVRDARARLVADEVV 235 Query: 223 HIKLSLTGFLDGKFDQSFCA--LKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 ++ +L + +++ L+E+ + + R ++ + G R+ ++ Sbjct: 236 TLRRALAEHTRTEEERTTERMVLQEKLDRAVIRSERIVEEQEGDEVDGARRTAFALEQVQ 295 Query: 280 KAITIAHGSTGEQKVVLVG 298 + + S +Q++ L+G Sbjct: 296 ERLR-NLLSLAQQRLALLG 313 >gi|328885699|emb|CCA58938.1| hypothetical protein SVEN_5652 [Streptomyces venezuelae ATCC 10712] Length = 612 Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 74/400 (18%), Positives = 129/400 (32%), Gaps = 65/400 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63 ++++ + + FR S ++ D H++ VG N VGK+ + E + L P R FRR + Sbjct: 1 MQVRRVVLENFRGVKSGTILLD-GHSLLVGSNSVGKSTVCEGLELVLGPERMFRRPVVDE 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--QINDVVIRVVDELNKH-- 119 G + EG I + L D + R + + D L+ Sbjct: 60 YDFYG-----GCYQEREGKLPEVRIEVVLTNLSDAAERRFGSHLRRWSAQTSDFLDMVPA 114 Query: 120 -----------LRISWL---VPSMDRIFSGL----SMERRRFLDRMVFAI---------- 151 L + +L P D G LD + Sbjct: 115 AIEDAETGEWCLPVVFLGRYDPQEDDFIGGTFFAHPESVPDGLDGEESGLGAGLKSFTRE 174 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 D RH + + R R NR LT S +I AEL + + + ++ Sbjct: 175 DKRHCGFL--YLRPNRTGNRALTFQRG--SLLDTIVRLEAELAGPLWEKALRDLEQVAVA 230 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR--TLIGPH 269 E + I+ + F+ L+ A +L + + T GPH Sbjct: 231 AAESGFGKIRTEIRDRVDRFVSLGDTADPVDLQ---ASELTREHLREVLRLFIATQPGPH 287 Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDE 328 A+ STG +++ + I+ G I ++E L Sbjct: 288 -----------AVPFNRLSTGSLNLLVFAL----LTYIAELKGDKSVIFAMEEPEIALPP 332 Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 + L V Q+ +T V + E ++ + I+ Sbjct: 333 HAQRRLIDFVVKRMGQVIVTSHSPYVIEKF-EPSRIVVIN 371 >gi|238917709|ref|YP_002931226.1| putative ATP-dependent endonuclease of the OLD family [Eubacterium eligens ATCC 27750] gi|238873069|gb|ACR72779.1| putative ATP-dependent endonuclease of the OLD family [Eubacterium eligens ATCC 27750] Length = 568 Score = 73.4 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 61/371 (16%), Positives = 126/371 (33%), Gaps = 69/371 (18%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +R+ I+ + I F+ Y + + I VGDN GK+ ILEAI+ G Sbjct: 22 HRMFIRKVKIHNFKCYRDFEITLEEGLNIVVGDNEAGKSTILEAINLALTG--------- 72 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + G +IS + ++ + + I L Sbjct: 73 ---------------IISGKSIWNEISQYIFNKEAVDEYIVSLGTAPIA----LPYITIE 113 Query: 123 SWLVPSMDRIFSGLS-MERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRN-RLLTEGYF 178 + + + +G + +R + F A + ++ ++E L++ RN + L Y+ Sbjct: 114 IFFGGDENPLMNGDANSDRDNSAEGFCFKIAFNDKYAD---EYEALVQQRNVKSLPIEYY 170 Query: 179 DSSWC----SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 D +W +I + + + + + L + + K + ++ Sbjct: 171 DITWTTFARDAITTRSIPYKSSLIDSSEYRYKSGNDLYLSRIIKGSLEPEDITSIAQAHR 230 Query: 235 KF------DQSFCALKEEYAKKLFDGRKM-----DSMSRR---TLIGPHRSDLIVDYCDK 280 K D S A+ + + K + +++ + ++ Y K Sbjct: 231 KMRDTFINDPSIEAINNKINQDASLTDKKIALSVELVTKNAWENSLVTQLDEIPFHYVGK 290 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 GEQ + L T+ A I+LL+E HL + N L + +++ Sbjct: 291 ---------GEQ-----CVVKTELALAKRTSQNASIILLEEPENHLSHTRLNQLIKCISE 336 Query: 341 --IGSQIFMTG 349 QI ++ Sbjct: 337 QYAEKQILIST 347 >gi|22297672|ref|NP_680919.1| hypothetical protein tll0128 [Thermosynechococcus elongatus BP-1] gi|22293849|dbj|BAC07681.1| tll0128 [Thermosynechococcus elongatus BP-1] Length = 920 Score = 73.4 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 88/283 (31%), Gaps = 39/283 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRR 58 ++I+ L + F+ + F + G+NG GKT++ EAI+++ G GF Sbjct: 1 MEIQRLTLKNFKTHRDRTFEFMPGVNVICGENGAGKTSLFEAIAWVLFDARSGYGSGF-- 58 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADI-----------------SIKLETRDDRSVR 101 + + R G+ + + +G + I + L R+D Sbjct: 59 --HKAIIRRGTQRAEAIVQFISAADGRSYIVRRNTQTGYSIVDPQVGELGLPLREDVHAW 116 Query: 102 CLQINDVVIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLD--RMVFAIDPRHRR 157 + + IR L +P M F +RR+ + V Sbjct: 117 LQE--HLGIRSAFPLRDLFEQIIGIPQGMMTADFLKPPAQRRQIFEPILQVSDYRQAFDN 174 Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSS---IEAQMAELGVKINIARVEMINALSSLIME 214 + L + + ++ E Q L ++ R L Sbjct: 175 ALALVNFSQEQVASLERQLALQNQELATRSQYEQQATALAAELERDRQRC-EELRQECQA 233 Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 K+ + L ++ L+++ ++L R+ Sbjct: 234 LAAKKQEYEAAVETLNRLQQTCERLEAQLRQQ--EELCRDRQR 274 >gi|332343180|gb|AEE56514.1| hypothetical protein UMNK88_1917 [Escherichia coli UMNK88] Length = 578 Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 62/391 (15%), Positives = 118/391 (30%), Gaps = 80/391 (20%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + I FR+ L +G GKT IL+AI R R S++D Sbjct: 2 VRVCKVEIQNFRSIRLLTWQPSPGLNCLIGPGDSGKTTILDAIDLCLGAR--RNVSFSD- 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FF G++ ISI L +R +D +L+ Sbjct: 59 -----TDFF-------GLDVTQPISITLTLGSLPD---------PLRAMDAYGNYLQA-- 95 Query: 125 LVPSMDRIFSGLSM--------ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 S+ + R R +D + +P + E L + RN + Sbjct: 96 -FNSVTGLVQEEPQFGLETVLCLRLR-VDSEL---EPNWTLVSLRGEALGQERNLAWKDR 150 Query: 177 YFDSSWCSSIEAQMAELG-VKINIARVEMINALSS----------LIMEYVQKENFPHIK 225 A++ ++ AR ++N L+ + Sbjct: 151 ------LLIAPARLGTYASSNLSWARGSVLNRLTEERPNLGAELSNAARQARTSFGGQAA 204 Query: 226 LSLTGFLDG--KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 + L LD + + L D + + + + Sbjct: 205 VQLAATLDVVTQKANELGVPVGGRTQALLDAHAVSIGDGAIAL----------HNSAGVP 254 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 + TG ++++ G+ A A+ A + L+DE+ L+ + L + + Sbjct: 255 LRSLGTGSSRLLVAGMQRAAAQ-------RASVALVDEVEYGLEPHRLTRLLNSLGARET 307 Query: 344 ----QIFMTGTDKSVFDSLNETAKFMRISNH 370 Q+F+T LN + + H Sbjct: 308 PPPLQVFLTTHSPVAVRELNGN-QLFVVRGH 337 >gi|226365989|ref|YP_002783772.1| chromosome partition protein SMC [Rhodococcus opacus B4] gi|226244479|dbj|BAH54827.1| chromosome partition protein SMC [Rhodococcus opacus B4] Length = 1201 Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIDYSEVSITRRMFRDGAGEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLAAILESRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KAVRKLDAMQANLARLNDLTAELRRQLKPLGRQAEVARRA 215 >gi|257469919|ref|ZP_05634011.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185] gi|317064148|ref|ZP_07928633.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185] gi|313689824|gb|EFS26659.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185] Length = 932 Score = 73.0 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI +++ +R + L + FD+ + +G+NG GK++ILEAI + R + + Sbjct: 1 MKINRIHLENYRIHDKLDVEFDSGINLLLGENGKGKSSILEAIGYALFDSELRGGNQREA 60 Query: 65 TRIGSPSF--FSTFARVEGMEGLADISIK 91 + G S F ++G E + I Sbjct: 61 IKYGKKSAKIEIEFTGIDGEEYIVTRKIP 89 >gi|255714078|ref|XP_002553321.1| KLTH0D14080p [Lachancea thermotolerans] gi|238934701|emb|CAR22883.1| KLTH0D14080p [Lachancea thermotolerans] Length = 1102 Score = 73.0 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 4/100 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK + + F + L + VG+NG GK+ +L AI+ + R +S D Sbjct: 69 IKRVQLRNFMCHEHFELELGPRLNFIVGNNGSGKSAVLTAITIGLGAKAADTNRGSSLKD 128 Query: 64 VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRC 102 + R G S EG G + E R +R+++ Sbjct: 129 LIREGCNSSKIVVVLNNEGFGGYEQGTYGTEIRIERTIKK 168 >gi|162456585|ref|YP_001618952.1| hypothetical protein sce8302 [Sorangium cellulosum 'So ce 56'] gi|161167167|emb|CAN98472.1| hypothetical protein sce8302 [Sorangium cellulosum 'So ce 56'] Length = 443 Score = 73.0 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 67/395 (16%), Positives = 131/395 (33%), Gaps = 61/395 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRAS--Y 61 ++I + + FR + L + + T+ VG NG GKT +LE ++ L F AS Sbjct: 1 MRIDEIRLINFRAFERFALHLEPRLTVLVGRNGTGKTTVLEGLAVALGAWLSFFNASRDD 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNKH 119 + + + + V M + ++ ET ++ R + K Sbjct: 61 RPIPKSAARFVTTMHGGVPSMATCYPVRVEASGETPLGHVAWARELRGADSRTTTGVTKS 120 Query: 120 LRISWLVPSMDRIFSGLSMERRRF----LDRMVFAIDPRHRRRMIDF--ERLMRGRNRLL 173 R +E RF +D + +P + + RL + Sbjct: 121 GR-------------EGPLEATRFMPHGIDDAISGAEPIALPVLAYYGTGRLWHHKRDRN 167 Query: 174 TEGYFDSSWCSSIEAQMAELG-----VKINIARVE-MINALSSLIMEYVQKENFPHIKLS 227 E S A + R E + L+ +E P ++ Sbjct: 168 PERAGLKSRLQGYRAALEAASDQKGFEAWMAWREEDRVQRLAR-----AAEEGRPLTEVR 222 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAH 286 + L+G + L+ +RR + +L VD+ D ++ Sbjct: 223 -SPELEGVSAAACACLE---------------GARRIYYSANHQELRVDFVDGSSLPFGA 266 Query: 287 GSTGEQKVVLVGIFLA-HARLISNTTGFAP------ILLLDEISAHLDEDKRNALFRIVT 339 S G++ ++ V +A A ++ + G ++L+DE+ HL + + + Sbjct: 267 LSDGQRNLIAVAADIAWRATQLNPSFGAEAPARAAGVVLIDEVDLHLHPAWQWRVLDDLL 326 Query: 340 DI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 G Q +T V + + + +HQA Sbjct: 327 RAFPGLQFVVTTHSPQVMSAAPRGSVRLLDPDHQA 361 >gi|269795676|ref|YP_003315131.1| condensin subunit Smc [Sanguibacter keddieii DSM 10542] gi|269097861|gb|ACZ22297.1| condensin subunit Smc [Sanguibacter keddieii DSM 10542] Length = 1213 Score = 73.0 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 26/211 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKTLTLRGFKSFASATTLNLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111 DV G+ A V +D ++ +E + IN R Sbjct: 61 MEDVIFAGTSGRPPLGRAEVSLTIDNSDGALPIEYAEVTISRTLFRNGGSEYAINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + ERR F++ + R E Sbjct: 121 LLDIQDLLSDSGLGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 + +R + + + + I Q+ LG Sbjct: 176 KALRKLDAMQGNLLRLTDLTAEIRRQLGPLG 206 >gi|255535243|ref|YP_003095614.1| hypothetical protein FIC_01102 [Flavobacteriaceae bacterium 3519-10] gi|255341439|gb|ACU07552.1| hypothetical protein FIC_01102 [Flavobacteriaceae bacterium 3519-10] Length = 550 Score = 73.0 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 65/378 (17%), Positives = 128/378 (33%), Gaps = 52/378 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK + I FR+ IFVG N GKTN EA+ F G + D+ Sbjct: 1 MKIKAIKIDNFRSIQQTEFTTTD-FNIFVGQNNCGKTNFFEAVEFFFNGIS-KSTKLEDL 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRI 122 + + + G D +++ +R+ ++ I L R Sbjct: 59 -KFKRETEREIIVEI-TFTGAIDGVAQMQNVANRTKIENALDGSDIVTFKRSSLLPTKRK 116 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 ++ + +G FL + + ++ + + + Sbjct: 117 MFINGTEVNPGTGFDAALNDFLPKFEYINTKQYYDSVAKYGK------------------ 158 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + I ++ + I + + E + +N + +FD Sbjct: 159 TTPIGIMLSGVLTAILQENEQY-QQFQAKFRELFEDDN---------SEIKAEFDNVGNN 208 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI------VDYCDKAITIAHGSTGEQKVVL 296 +K K+ D K+ + + P DL+ VD + + G G Q+ ++ Sbjct: 209 VKIHLEKQFPDCTKV----KFEVSAPVFDDLLKNFETTVDDGIETLAEEKG-DGMQRALM 263 Query: 297 VGIFLAHARLIS--NTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTGTD 351 + I A+A G + + +DE HL + L I++ Q+F+ T Sbjct: 264 LAIIQAYADFRKANEDVGKSFLFFIDEAELHLHPTAQRNLKNVLHILSQTRDQVFI-NTH 322 Query: 352 KSVFDSLNETAK-FMRIS 368 SVF + N T++ ++ Sbjct: 323 SSVFVADNYTSQTIFKVE 340 >gi|120403167|ref|YP_952996.1| chromosome segregation protein SMC [Mycobacterium vanbaalenii PYR-1] gi|119955985|gb|ABM12990.1| condensin subunit Smc [Mycobacterium vanbaalenii PYR-1] Length = 1194 Score = 73.0 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 101/278 (36%), Gaps = 28/278 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTLTIDNSDNALPIEYSEVSITRRMFRDGAGEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + + + + Q+ LG + +AR + + + + + Sbjct: 176 KAVRKLDSMSANLARLTDLTTELRRQLKPLGRQAEMARRA--QTIQADLRDARLRLAADD 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + F D ++ + + + + R ++ + Sbjct: 234 LVTRKAEFDDTNQAETTLRREHDELTERMEARTLELDA 271 >gi|126434521|ref|YP_001070212.1| condensin subunit Smc [Mycobacterium sp. JLS] gi|126234321|gb|ABN97721.1| condensin subunit Smc [Mycobacterium sp. JLS] Length = 1195 Score = 73.0 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFAAPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEHSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGGSEYEINGSHCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KAVRKLDSMQANLARLTDLTTELRRQLKPLGRQAEMARRA 215 >gi|269127635|ref|YP_003301005.1| chromosome segregation protein SMC [Thermomonospora curvata DSM 43183] gi|268312593|gb|ACY98967.1| chromosome segregation protein SMC [Thermomonospora curvata DSM 43183] Length = 1218 Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 99/275 (36%), Gaps = 29/275 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLRGFKSFASSTTLRFEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S ++ +G I + + RS + IN R Sbjct: 61 MEDVIFAGTASRPPLGRAEVILTIDNSDGALPIDYSEVTISRLMFRSGQSEYAINGDPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + RR ++ + R E Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGMVDTVLHAGPDGRRAVIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + + ++ LG + IAR + + + + + + Sbjct: 176 KALRKLEAMQANLNRVQDLTAELRRRLKPLGRQAEIARKAAV--IQAELRDAKARLLADD 233 Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 + L + + + + E + L ++ Sbjct: 234 LVTLRTRLEREEADEAALQRRRAEVEQALAAAQQR 268 >gi|119962078|ref|YP_948190.1| chromosome segregation protein SMC [Arthrobacter aurescens TC1] gi|119948937|gb|ABM07848.1| chromosome segregation protein SMC [Arthrobacter aurescens TC1] Length = 1206 Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 55/313 (17%), Positives = 109/313 (34%), Gaps = 33/313 (10%) Query: 3 NRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRR 58 + + +K L + F+++AS F+ T VG NG GK+N+++A++++ + R Sbjct: 13 SALHLKSLTVRGFKSFASATTFDFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKTLRG 72 Query: 59 ASYADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVV 109 DV G+ A V AD ++ +E + R L IN Sbjct: 73 GKMEDVIFAGTSGRPPLGRAHVALTIDNADNALPIEYSEVTISRTLFRTGGSEYAINGAP 132 Query: 110 IRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161 R++D L + + + +DR+ +RR F++ + R Sbjct: 133 CRLLDIQELLSDSGLGREMHVIVGQGQLDRVLHATPEDRRGFIEEAAGILKHR-----RR 187 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 E+ +R + + I Q+ LG + IAR + + Sbjct: 188 KEKTVRKLEAMQANLARLGDLTAEIRRQLTPLGKQAEIARRAQTVQF-DVRDARARLLAD 246 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM------DSMSRRTLIGPHRSDLIV 275 ++L+ T D + + ++ L GR+ + + R Sbjct: 247 ELVQLTTTLEKDVADEAALKERRQVVEAGLGSGRRRQAALEQQAAEATPRLNAARDHWYQ 306 Query: 276 DYCDKAITIAHGS 288 ++ + GS Sbjct: 307 LSANRERLRSLGS 319 >gi|111023487|ref|YP_706459.1| chromosome partition protein [Rhodococcus jostii RHA1] gi|110823017|gb|ABG98301.1| chromosome partition protein [Rhodococcus jostii RHA1] Length = 1201 Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIDYSEVSITRRMFRDGAGEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLAAILESRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KAVRKLDAMQANLARLNDLTAELRRQLKPLGRQAEVARRA 215 >gi|108798921|ref|YP_639118.1| condensin subunit Smc [Mycobacterium sp. MCS] gi|119868036|ref|YP_937988.1| condensin subunit Smc [Mycobacterium sp. KMS] gi|108769340|gb|ABG08062.1| condensin subunit Smc [Mycobacterium sp. MCS] gi|119694125|gb|ABL91198.1| condensin subunit Smc [Mycobacterium sp. KMS] Length = 1195 Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFAAPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEHSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGGSEYEINGSHCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KAVRKLDSMQANLARLTDLTTELRRQLKPLGRQAEMARRA 215 >gi|88855274|ref|ZP_01129939.1| chromosome segregation protein [marine actinobacterium PHSC20C1] gi|88815802|gb|EAR25659.1| chromosome segregation protein [marine actinobacterium PHSC20C1] Length = 1191 Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 103/290 (35%), Gaps = 29/290 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAQPTTFAFEQGVTCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ +G I + + IN R Sbjct: 61 MEDVIFAGTATKGPLGRAEVVLTIDNADGALPIEYSEVTISRTLFRNGGSEYAINGTQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + +RR F++ + R E Sbjct: 121 LLDVQELLSDSGLGREMHVIVGQGQLDAVLHASPEDRRGFIEEAAGILKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYVQKENFP 222 + +R + + S I Q+ LG + IA+ I ++ + + Sbjct: 176 KTIRKLDAMQANLTRLSDLAGEIRRQLKPLGQQAEIAKEAASIASIVRDARARLLADEVV 235 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 ++ S+ F + ++ + ++L + ++ + +G + Sbjct: 236 GLRSSINDFSRSESERKTQRIV--LQEQLDQNKLREARLEQAQVGDDVDE 283 >gi|326693699|ref|ZP_08230704.1| chromosome partition protein [Leuconostoc argentinum KCTC 3773] Length = 1184 Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 56/293 (19%), Positives = 105/293 (35%), Gaps = 34/293 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +K+K L IS F+++A + F T VG NG GK+NI+EAI ++ + R Sbjct: 1 MKLKSLEISGFKSFADKTVIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 AD+ G+ + + A V D IK + + R R L QIN V R Sbjct: 61 MADIIFGGTNTRPALNRAEVSMTFDNTDHYIKSDFSEIRITRKLYRSGESSYQINGVESR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ +RR ++ + ++++ + Sbjct: 121 LRDIHELFMDTGLGRESFSIISQGRVESIFNAKPEDRRSIIEEVAAVY--QYKQNKQRAQ 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN-----IARVEMINALSSLIMEYVQK 218 + ++ L +AE + AR + ++ L + + Sbjct: 179 KELQQTTDNLARVADIIHEIEGRIEPLAEQSAQATDYIAQKARFDTLDRLRLALTQQALV 238 Query: 219 ENFPHIKLSLT------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 E LT D L ++ ++ + + D++ L Sbjct: 239 EQKAQATAELTRQDAQVNHTKTTVDALNQTLTQKRQARVNEQKTRDALQATIL 291 >gi|319441352|ref|ZP_07990508.1| chromosome segregation protein [Corynebacterium variabile DSM 44702] Length = 1180 Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 95/290 (32%), Gaps = 47/290 (16%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLKFEPGICGVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGAGERKALGRAEVTLTIDNSDGALPIDYSEVSVTRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + +I ERR +++ + R E Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAYIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELG-------------VKINIARV----EM 204 + R + +G D + Q+ L I R+ + Sbjct: 176 KA--QRKLVSMQGNLDRLHDLTDELAKQLKPLARQAEAAQKAERVQATIRDNRLLLAADK 233 Query: 205 INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 + L+ + E + + ++ +EE L D Sbjct: 234 VRRLTDQLTEADAELSVLTADTDAVRVDLEEYSGELAVTEEELRTALEDA 283 >gi|118472416|ref|YP_886763.1| chromosome segregation protein SMC [Mycobacterium smegmatis str. MC2 155] gi|118173703|gb|ABK74599.1| chromosome segregation protein SMC [Mycobacterium smegmatis str. MC2 155] Length = 1195 Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTLTIDNSDNALPIEYSEVSITRRMFRDGAGEYEINGASCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KAVRKLDSMAANLARLTDLTTELRRQLKPLGRQAEMARRA 215 >gi|297618563|ref|YP_003706668.1| SMC domain-containing protein [Methanococcus voltae A3] gi|297618623|ref|YP_003706728.1| SMC domain-containing protein [Methanococcus voltae A3] gi|297377540|gb|ADI35695.1| SMC domain protein [Methanococcus voltae A3] gi|297377600|gb|ADI35755.1| SMC domain protein [Methanococcus voltae A3] Length = 1113 Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 92/244 (37%), Gaps = 28/244 (11%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA- 59 M + +K L + FR++ + ++ F T VG NG GK++I +AI++ R+ Sbjct: 1 MGQNMILKTLELQNFRSHRNSKIEFKEGITTIVGKNGSGKSSIFQAINYALFAPSKRKEY 60 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-------- 111 +++ + + SF F E I + + + L +ND ++ Sbjct: 61 ELSNMIKNEADSFKIVF-TFEVRGKTYKIIRQRNRKSTKPENILLLNDTILADNNSMVNT 119 Query: 112 VVDELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMI 160 V E+ + + + + + +R+ +D+++ R + + Sbjct: 120 KVQEILEMDNNVFSNAIYIKQGDIINLINLPPKDRKDVIDKILGVEKYVKAHDRMKDVIT 179 Query: 161 DFERLMRGRNRLLTEGYFDSSWC--SSI-EAQMAELGVKINIARVEMINALSSLIMEYVQ 217 ++ + LL + D + S + Q E ++ + + + L + E + Sbjct: 180 RYD----EKINLLNKNLVDETQINESILKNNQEIENYNNLSYEKSQNLKNLKNDEKEILN 235 Query: 218 KENF 221 K N Sbjct: 236 KLNL 239 Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 15/115 (13%) Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS-DLIVDYCDKAITIAHGSTGEQKVVL 296 + + L ++YA ++F + + + I DLIVD I +++ S GEQ V Sbjct: 980 EMYIPLIQKYANEIFS----EFGMQYSHIQITSDCDLIVD----GIPVSNMSGGEQVAVA 1031 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI---VTDIGSQIFMT 348 + + L A I + ++LDE +A+LDED+R L I + I + +T Sbjct: 1032 LALRLGIANAICDNM---ECIILDEPTAYLDEDRRRNLLTIFSSIKKINQIVIIT 1083 >gi|48477311|ref|YP_023017.1| chromosome segregation protein [Picrophilus torridus DSM 9790] gi|48429959|gb|AAT42824.1| DNA repair protein Rad50 [Picrophilus torridus DSM 9790] Length = 880 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 16/159 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA-SYAD 63 + IK L + F +Y + F TI G NG GKT+I++AI F R + + Sbjct: 1 MIIKSLKLKNFVSYDDAEIEFTPGITIITGKNGAGKTSIVDAIKFALFTET-RNSEKIEE 59 Query: 64 VTRIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRCLQIN-------DVVIRVVDE 115 + + G + G + S K R + N D + ++ Sbjct: 60 MVKKGKNNLSVMLEFYIGSDVYQVFRSYKFGKGSRRESYIKKNNEIIAEGFDQTTKAIEN 119 Query: 116 LNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMV 148 + + + MD + SG +R+ ++ Sbjct: 120 ILGISKDVFKNSIFVGQGEMDSLISGTPKQRKEIFSEIL 158 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 S GE+ + + + LA A +++DE + +LDED+R L I+ Sbjct: 789 SGGEKTALSLALRLAVAEY---ALNNKSFIIMDEPTNYLDEDRRTNLKDIIQ 837 >gi|88601344|ref|YP_501522.1| chromosome segregation protein SMC [Methanospirillum hungatei JF-1] gi|88186806|gb|ABD39803.1| condensin subunit Smc [Methanospirillum hungatei JF-1] Length = 1146 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + I L I F+++ ++ F T+ G NG GK+NI+++I F LS R R Sbjct: 1 MHITQLEIDNFKSFGRKTKIPFLPGFTVISGPNGSGKSNIIDSILFVLALSSSRHLRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRV---VDEL 116 D+ + + A VE +I +++ ++ L +N R +D L Sbjct: 61 LTDLINLNTD---RNTAEVEITFSDGTNIRRRIKRTENTYYNYLYLNGRSCRQGELLDFL 117 Query: 117 NKHLRI-----SWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERL---- 165 H + + ++RI ERR+ +D V D + + + ++ Sbjct: 118 AGHGIVPHGYNVVMQGDINRIIEMSDNERRKIIDEIAGVAEFDSKKDMALSELSQVRERM 177 Query: 166 ---------MRGRNRLLTEGYFDSSWCSSIEAQMAEL----GVKINIARVEMINALSSLI 212 + R L + + ++ ++ L AR + +AL I Sbjct: 178 TEESVHIEELSVRLAQLEKQKEQAVSYRKLQDELKYLTMCRSAARLSARKKDQDALLQSI 237 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + +S + ++ A + Sbjct: 238 AEEKSQVVQIEADISWKSHERDFIRDEIAEIDQKIAAR 275 >gi|289764767|ref|ZP_06524145.1| exonuclease SBCC [Fusobacterium sp. D11] gi|289716322|gb|EFD80334.1| exonuclease SBCC [Fusobacterium sp. D11] Length = 233 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 17/171 (9%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-- 61 ++ IK + + +R+++++ + F + +G NG GKT+ILEAIS + R Sbjct: 2 KMIIKKVQLENYRSHSNITVEFTKGINLILGKNGRGKTSILEAISTVMFNTKDRSGKETG 61 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVIRVVDEL 116 + G S + ++ + + + + + ++EL Sbjct: 62 KSYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMTGSEYDGDIQEKLEEL 121 Query: 117 NKHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157 + + IF +R +++ I Sbjct: 122 CGIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 172 >gi|329891031|ref|ZP_08269374.1| recF [Brevundimonas diminuta ATCC 11568] gi|328846332|gb|EGF95896.1| recF [Brevundimonas diminuta ATCC 11568] Length = 78 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355 ++ + LA +++ P+LLLDE AHLDE +R ALF + + Q FMTGT++ +F Sbjct: 1 MLNLILAQVARLADQP-AQPVLLLDEAPAHLDEARRAALFDEIEALKLQAFMTGTERPLF 59 Query: 356 DSLNETAKFMRISNH 370 +L A+F+ + Sbjct: 60 AALEGRAQFVAVEGG 74 >gi|291007123|ref|ZP_06565096.1| chromosome segregation protein SMC [Saccharopolyspora erythraea NRRL 2338] Length = 833 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 81/220 (36%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+L+A+ ++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGEQGAKDLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIEYTEVSITRRMFRDGASEYEINGNSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I E RR ++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGQLANILQAKPDEHRRLIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + S + Q+ LG + IAR Sbjct: 176 KALRKLDAMQANLTRLTDLTSELRRQLKPLGKQAEIARKA 215 >gi|118617609|ref|YP_905941.1| chromosome partition protein Smc [Mycobacterium ulcerans Agy99] gi|118569719|gb|ABL04470.1| chromosome partition protein Smc [Mycobacterium ulcerans Agy99] Length = 1200 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSLRAPLGRAEVTVTIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215 >gi|306819257|ref|ZP_07452968.1| SMC structural maintenance of chromosomes partitioning protein [Mobiluncus mulieris ATCC 35239] gi|304648039|gb|EFM45353.1| SMC structural maintenance of chromosomes partitioning protein [Mobiluncus mulieris ATCC 35239] Length = 1199 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ + + + T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKNLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGQ 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111 +DV G+ + A V+ D ++ +E + IN +R Sbjct: 61 MSDVIFAGTKTKAPLGRAEVQLTVDNTDGALPIEYSEVTISRTMFRSGGSEYAINGTPVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + S ERR F++ + R + Sbjct: 121 LLDIQELLSDTGMGRQMHVIVGQGQLDTVLSASEAERRAFVEEAAGVLKHR-----QRKD 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 R +R L + + ++ LG + AR Sbjct: 176 RALRKLESLAVNLSRVQDLTNDVGKRLGPLGKQAEAARKA 215 >gi|227875976|ref|ZP_03994099.1| possible SMC structural maintenance of chromosomes partitioning protein [Mobiluncus mulieris ATCC 35243] gi|307700127|ref|ZP_07637173.1| chromosome segregation protein SMC [Mobiluncus mulieris FB024-16] gi|227843508|gb|EEJ53694.1| possible SMC structural maintenance of chromosomes partitioning protein [Mobiluncus mulieris ATCC 35243] gi|307614676|gb|EFN93899.1| chromosome segregation protein SMC [Mobiluncus mulieris FB024-16] Length = 1199 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ + + + T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKNLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGQ 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111 +DV G+ + A V+ D ++ +E + IN +R Sbjct: 61 MSDVIFAGTKTKAPLGRAEVQLTVDNTDGALPIEYSEVTISRTMFRSGGSEYAINGTPVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + S ERR F++ + R + Sbjct: 121 LLDIQELLSDTGMGRQMHVIVGQGQLDTVLSASEAERRAFVEEAAGVLKHR-----QRKD 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 R +R L + + ++ LG + AR Sbjct: 176 RALRKLESLAVNLSRVQDLTNDVGKRLGPLGKQAEAARKA 215 >gi|291460939|ref|ZP_06025996.2| exonuclease SBCC [Fusobacterium periodonticum ATCC 33693] gi|291379951|gb|EFE87469.1| exonuclease SBCC [Fusobacterium periodonticum ATCC 33693] Length = 923 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 23/182 (12%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-- 61 ++ IK + + +R++++ + F + +G NG GKT+ILEAIS + R Sbjct: 2 KMIIKRVKLENYRSHSNTTVDFSKGVNLILGKNGKGKTSILEAISSVMFNTKDRSGKETG 61 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-----IRVVDEL 116 + + G S + + + +N + ++EL Sbjct: 62 KNFIKFGEKSGKIEIEFTANDGRDYILKTEFFKTKPKRQTLKDLNGIDCEEDIQEKLEEL 121 Query: 117 NKHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFERLM 166 + + IF +R +++ I +++ + Sbjct: 122 CGIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEM------YDKFL 175 Query: 167 RG 168 + Sbjct: 176 KE 177 >gi|269977118|ref|ZP_06184092.1| chromosome segregation protein SMC [Mobiluncus mulieris 28-1] gi|269934949|gb|EEZ91509.1| chromosome segregation protein SMC [Mobiluncus mulieris 28-1] Length = 1199 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ + + + T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKNLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGQ 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111 +DV G+ + A V+ D ++ +E + IN +R Sbjct: 61 MSDVIFAGTKTKAPLGRAEVQLTVDNTDGALPIEYSEVTISRTMFRSGGSEYAINGTPVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + S ERR F++ + R + Sbjct: 121 LLDIQELLSDTGMGRQMHVIVGQGQLDTVLSASEAERRAFVEEAAGVLKHR-----QRKD 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 R +R L + + ++ LG + AR Sbjct: 176 RALRKLESLAVNLSRVQDLTNDVGKRLGPLGKQAEAARKA 215 >gi|124003422|ref|ZP_01688271.1| ATP-binding protein [Microscilla marina ATCC 23134] gi|123990991|gb|EAY30443.1| ATP-binding protein [Microscilla marina ATCC 23134] Length = 449 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 63/399 (15%), Positives = 134/399 (33%), Gaps = 63/399 (15%) Query: 5 IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +KIK L ++ FR + L++ F D +F+G NG GK+++L+A+ S R A + + Sbjct: 1 MKIKELELNNFRGFKHLKIQFPDNNLAVFIGTNGSGKSSVLDALGMASLWF-LRLAKWNE 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLAD----ISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 + F + + + + +KL + +R + + I + K Sbjct: 60 SDQYFFDRFLLKGFNLINQDIRINSDEALQVKLTGQQANGIRISKFTNQEISIGSFNLKK 119 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 I I + + H R + ++ + D Sbjct: 120 TSIVN-ANGSLPIV-------------AYYQTEKHHFLRRTN------QKHEIEEGEVND 159 Query: 180 SSWCSSIEAQMAEL----GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 ++ I Q+A KI+ A E+ ++ ++ + D Sbjct: 160 NNPIKKILPQLATYQNAFSSKISHA---------EDFSEWFKQIEDEEVR-QIRNKSDFS 209 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD------------LIVDYCDKAIT 283 + + + F D + T + +D L ++ + Sbjct: 210 YRDFRLEVVRKALDVFFSALGSD---KYTNLSVKVNDSPVFEFKASDYSLAINKNGQDFD 266 Query: 284 IAHGSTGEQKVVLVGIFLA-----HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 I S GE+ ++++ +A + N ++++DEI HL + + + Sbjct: 267 INQLSDGEKTLIMLVCDIARRLTIANPALENKLEGEGVVMIDEIELHLHPAWQRNVLPAL 326 Query: 339 TDI--GSQIFMTGTDKSVFDSLNETAKF-MRISNHQALC 374 Q +T V ++++ F R N+Q C Sbjct: 327 QQTFPNIQFIVTTHSPHVLNNVDARNIFLFRNENNQITC 365 >gi|170289653|ref|YP_001736469.1| DNA repair ATPase SbcC [Candidatus Korarchaeum cryptofilum OPF8] gi|170173733|gb|ACB06786.1| ATPase involved in DNA repair, SbcC [Candidatus Korarchaeum cryptofilum OPF8] Length = 902 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 20/162 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63 ++IK +++ F ++ + F +G+NG GKT ILEAI++ R + D Sbjct: 1 MRIKRISLENFGSHQKTDITFADGINAIIGNNGAGKTTILEAIAYALY---HRASRQQDE 57 Query: 64 VTRIGSPSF-FSTFARVEG------MEGLADISIKLETRD--DRSVRCLQINDVVIRVVD 114 + RIG+P + V+G E D + E + + + +Q + + Sbjct: 58 LIRIGAPYMRVALEFEVDGRSYIVTRERGRDGGVSAELHEIIEGGKKLIQRDQSKVSSQI 117 Query: 115 E-LNKHLRISWL------VPSMDRIFSGLSMERRRFLDRMVF 149 E + R +L + + +R+ + R++ Sbjct: 118 EAILGFSRDVFLQGIYVRQGEIQELLESQPSKRKEIIARLLG 159 >gi|190574391|ref|YP_001972236.1| putative conjugative transposon DNA recombination protein [Stenotrophomonas maltophilia K279a] gi|190012313|emb|CAQ45939.1| putative conjugative transposon DNA recombination protein [Stenotrophomonas maltophilia K279a] Length = 526 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 63/386 (16%), Positives = 116/386 (30%), Gaps = 58/386 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + I F+++ L L +A + VGDN VGK+ +LEAI + G+ R ++ Sbjct: 1 MPIERIVIDNFKSFRHLDLPLNAHMNLVVGDNEVGKSTLLEAIHAVVTGQLHGRNLAYEL 60 Query: 65 TR--IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 TR P+ + + I +E + L Sbjct: 61 TRYLFHQPTVQEYLGALATGTPASPPRISIEAYLGADA-----------ALASLRGTNNS 109 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRGRNRLLTEGY 177 L + R+ L+ + R + + P + + Sbjct: 110 LRLDTAGIRLLVELNDDYREEFNAYLQQHQGAVSLPVEYYTVRWYSFA--NNGVTARSIP 167 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KF 236 FDS+ + G+K I + + Q+ + + LS Sbjct: 168 FDSTIIDT-------HGIKTLSGADRYIAGIIEQALTPAQRVS---LSLSFRRMRQSFSE 217 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHG 287 + A+ + D T + P+ +L K Sbjct: 218 EADVAAINAYLTEHTGDISHRALTVGVDTSPRSTWETSLSPYLDELPFTQAGK------- 270 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQI 345 GEQ V + LA + G A +LL++E HL L + + Q+ Sbjct: 271 --GEQ--SAVKMKLA-----MHAAGAAHVLLIEEPENHLSYSSMTQLIDKIAALSTAQQV 321 Query: 346 FMTGTDKSVFDSLNETAKFMRISNHQ 371 + V + L + + Q Sbjct: 322 IIATHSSFVLNKLGVDNVILFSAQGQ 347 >gi|172040472|ref|YP_001800186.1| chromosome segregation protein [Corynebacterium urealyticum DSM 7109] gi|171851776|emb|CAQ04752.1| chromosome segregation protein [Corynebacterium urealyticum DSM 7109] Length = 1162 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 95/290 (32%), Gaps = 47/290 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASSTTLKLEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I R R +IN R Sbjct: 61 MEDVIFAGAGDRKPLGRAEVTLVIDNSDGKLPIEYSEVAVTRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + +I ERR F++ + R E Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESKPEERRAFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELG-------------VKINIARVEMINAL 208 + R + + D + Q+ L I R + Sbjct: 176 KA--QRKLVGMQANLDRLQDLTDELHRQLGPLARQADAAQRASTVQATIRDRRTVLAAHH 233 Query: 209 SSLIMEYVQKENFPHIKL-SLTGFLDGKFDQ---SFCALKEEYAKKLFDG 254 + E + + N +L +L + ++ ++EE L D Sbjct: 234 VRTLSENLHEANAETERLIEEREYLTEQLEEHSGELAEVEEELRTALEDA 283 >gi|257076095|ref|ZP_05570456.1| chromosome segregation protein [Ferroplasma acidarmanus fer1] Length = 894 Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 16/161 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + I F ++ + + F+ I G NG GKT+IL+AI F ++ Sbjct: 1 MIIESIKIINFLSHENTEITFEQGINIITGKNGAGKTSILDAIKFALFAESRNNEKNNEL 60 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVI------------ 110 + G F + V G L+ ++ + ++ N V++ Sbjct: 61 IKKGKNYFEITLNFNVNGEHYEVYRHFGLKKAKNAERLASVKKNGVIVAETYEGVNVEIT 120 Query: 111 RVVDELNKHLRISWLVP--SMDRIFSGLSMERRRFLDRMVF 149 ++++ + + S V MD + SG ER+ ++ Sbjct: 121 KILNVSREVFKNSVFVEQGQMDSLISGTPKERKTIFSDIIG 161 Score = 36.8 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 D+ V T+ S GE+ + + I L+ + I+++DE + LDED+R Sbjct: 787 DIKVTQNSMEQTLESLSGGEKTALAIAIRLSVTEYVLEII---SIIIMDEPTNFLDEDRR 843 Query: 332 NALFRIV 338 N L I+ Sbjct: 844 NNLKDII 850 >gi|257464155|ref|ZP_05628536.1| exonuclease SBCC [Fusobacterium sp. D12] gi|317061671|ref|ZP_07926156.1| exonuclease sbcc [Fusobacterium sp. D12] gi|313687347|gb|EFS24182.1| exonuclease sbcc [Fusobacterium sp. D12] Length = 921 Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 99/288 (34%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----------SPGR 54 ++IK + + +R+++ + + F + +G NG GK++ILEAI S G+ Sbjct: 1 MRIKKVQLKNYRSHSEIEVEFSRGINLILGRNGRGKSSILEAIGLALFHIKDRTGKSTGK 60 Query: 55 GFRRASYAD---VTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105 F + + + + F F + + L D+S +LE RD + + Sbjct: 61 TFLKYGEKECSILVEFLANDGREYSIFHQYFEKKGKIMILKDLSTELEYRDGIEEKLEDL 120 Query: 106 NDVVIRVVDELNKHLRISWLV--PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + E + IF R + ++ +F + + + + Sbjct: 121 CGIK----SEYRDVYENVIVAKQNEFINIFKETPENRAKIFNK-IFHTE-IYANLFSNLK 174 Query: 164 RLM----RGRNRLLTEGYFDSSWCSSIEAQMA-----ELGVKINIAR-VEMINALSSLIM 213 L+ + + L T S+ + E + A E + R E + L Sbjct: 175 GLLEQCQKEKEGLETSERVLSATLGNREERFAACREEEKAFTLWTKRKEEELQKKRKLTK 234 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 E E + L + Q K+E+ + L + ++ Sbjct: 235 EVEDWEKIEKEYEVINSSLSLQKTQ-IEQNKKEFLQHLSEAKRAKKAR 281 >gi|120609373|ref|YP_969051.1| hypothetical protein Aave_0676 [Acidovorax citrulli AAC00-1] gi|120587837|gb|ABM31277.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1] Length = 712 Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 76/408 (18%), Positives = 128/408 (31%), Gaps = 90/408 (22%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRG------ 55 + I L++ +RN+A+ +L+F +G+NG GKTN+ AI L + R Sbjct: 1 MHISKLSLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLLDDNMIRSAYRLES 60 Query: 56 ---FRRASYADVTRIGSP------SFFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQ 104 R + R F A V+ + I E + + Sbjct: 61 TDFHRG-----LGRWQGHWIIISLEFEEISADEAVQALFRHGTGGIDDEAIGKATYNLIF 115 Query: 105 INDVVIR----VVDE-----LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 IR +D+ L L L + IF+G S F D + + Sbjct: 116 RPKKEIRLRLSQLDDGDHAGLAAILNPVTLD-DYETIFTGRSDA--DFND------EAFY 166 Query: 156 RRRMIDFERLMRGR-NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214 + + DFE+ R N + + S + +I+ + AL ++ E Sbjct: 167 KEVVGDFEKA---RFNEEIEFPAIGAKIPSVLSV-----SKEIS---FTFVQALRDVVSE 215 Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG----- 267 + P LSL G D L + K L D + D R+ I Sbjct: 216 FHNNRTNPL--LSLLKGKSGDIDPVAFQLITDGVKALNDSIEALPDVQVVRSDISDTIKD 273 Query: 268 -----------------PHRSDLIVDYC---------DKAITIAHGSTGEQKVVLVGIFL 301 P +D + I S G ++ + + L Sbjct: 274 AAGEAYSPSSLSIKSDLPDEADKLFQSLKLFVGESGEGHEGPIHELSLGGANLIFLTLKL 333 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 + A LL++E AH+ + LF + +QI + Sbjct: 334 LEFKYQKAKQSIANFLLIEEPEAHIHTHIQKTLFDRLQYDDTQIIYST 381 >gi|22036085|dbj|BAC06579.1| hypothetical ATP-binding protein [Vibrio parahaemolyticus] gi|209364500|dbj|BAG74739.1| putative nucleotide-binding protein [Vibrio parahaemolyticus] Length = 560 Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 73/405 (18%), Positives = 138/405 (34%), Gaps = 74/405 (18%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSP--------- 52 N++ + L + +FR + LR+ F+ + T+ +G+NG GKT +L +IS LS Sbjct: 70 NKLNLVQLELFDFRKFKHLRISFEPKLTVIIGNNGQGKTALLNSISKTLSWLNANILKED 129 Query: 53 GRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 G+G R ++ D+ R + F GL I ++L S D I+ Sbjct: 130 GQGQRLSATRDIRRNSEAPYTDVFTEFSFGSGLKRIPVRLSRAKLGSTSK---RDSEIKN 186 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 + EL R+ + + + +++D + R + N Sbjct: 187 IKELANIFRVV----NDQHLLNLPLC--------AFYSVDRSY-----QLPRSTKE-NAA 228 Query: 173 LTEGYFDSSWCSSIE-----AQMAELGVKINIARVE----MINALSSLIMEYVQKENFPH 223 L E FD ++ ++ E + ++ V I L + + Sbjct: 229 LREERFD-AYNFALTGSGKFEHFVEWFIALHKKSVNDKSTEIEELKQQVKDLESSVESGI 287 Query: 224 IKLS-LTGFLDGKFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGP-----------HR 270 L + + + + LK K L D + + + Sbjct: 288 TSLKPILIQAQKQLNDALLTLKSANEKHVLTDAQTKEIVVNAICRVIPSISNIWVETDSG 347 Query: 271 SDLIVDYCDK-AITIAHGSTGE-----------QKVVLVGIFLAHARLISNTTGFAPILL 318 SD++ D ITI S G+ +++V++ L N I+L Sbjct: 348 SDIVFVTNDSIDITIEQLSDGQRTFLGLVADLVRRLVMLNPKL------ENPLNGQGIVL 401 Query: 319 LDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNET 361 +DEI HL + + + Q +T V ++ + Sbjct: 402 IDEIELHLHPKWQQDVLLDLQHCFPNIQFIVTTHSPLVLSTVEKN 446 >gi|297571143|ref|YP_003696917.1| chromosome segregation protein SMC [Arcanobacterium haemolyticum DSM 20595] gi|296931490|gb|ADH92298.1| chromosome segregation protein SMC [Arcanobacterium haemolyticum DSM 20595] Length = 1184 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 21/171 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R + Sbjct: 1 MHLKTLTLRGFKSFASQTTLHFEPGINCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGN 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 ADV G+ S + A V +D + ++ + R L IN R Sbjct: 61 MADVIFAGTASRQALGRAEVSLTIDNSDGQLPIDYSEVTITRTLFRAGGSEYAINGNTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 ++D + + + + +D + + ERR F++ + R Sbjct: 121 LLDIQELLSDTGMGRQMHVIIGQGRLDHVLTATPEERRTFIEEAAGVLKHR 171 >gi|213969459|ref|ZP_03397596.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|213925830|gb|EEB59388.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 394 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 51/389 (13%), Positives = 118/389 (30%), Gaps = 71/389 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++ FR Y F + VG NG GKT++L ++ + Sbjct: 1 MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGVAEC-------------L 47 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ + + + D+ ++ + RS + Sbjct: 48 IPYGN-----AMGQGQEILSKEDVRFVIDRHEGRSRFERK-----------------FPV 85 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR-------LLTEGY 177 + + IF + R L+ +DP + ++ N +L Sbjct: 86 FIRADGDIFDLPNWRAVRLLEPWEGGVDPSSLSHLSA---VLARNNAGEQIDFPVLAFYR 142 Query: 178 FDSSWCSSIEAQMAELGVKINIAR-------VEMINALSSLIMEYVQKENFPHIKLSLTG 230 + W S+ AE + +R + + L ++ ++ L Sbjct: 143 ANRRWSSA--RISAEFAAQQRTSRFDGYANWFDAVADLRD-FESWLIARTLERLQDRLDS 199 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + + + D + R + L+ A+ S G Sbjct: 200 TSTVEREDELEWVNRAIRLAIPDAHDLRYDLRLQSL------LVDMGEGNAVPFHELSDG 253 Query: 291 EQKVVLVGIFLAHAR-LISNTTGFAP------ILLLDEISAHLDEDKRNALFRIVTDI-- 341 ++ ++ + +A +++ G I+++DE+ HL + + + Sbjct: 254 QRSLIALIADIARRMCVLNPHIGKDVLANTGGIVIIDELDIHLHPAWQRNIAPTLKKAFP 313 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNH 370 Q T V SL + + + + N Sbjct: 314 KVQFIATSHSPQVIGSL-QPGEVILLKNG 341 >gi|119714067|ref|YP_919209.1| SMC domain-containing protein [Nocardioides sp. JS614] gi|119525976|gb|ABL79346.1| SMC domain protein [Nocardioides sp. JS614] Length = 533 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 113/375 (30%), Gaps = 51/375 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP----GRGFRRASYA 62 +K + I +R + S L F I VGDN GK+ +LEAI GR ++ + Sbjct: 2 LKKIAIRNYRTFKSFELEFAPDLNIVVGDNDAGKSTLLEAIGIALTLRLGGRSL-QSELS 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + A + I +E D + + + Sbjct: 61 PFL-FNLETTEEYIAALTAGATPDPPEILIELFLDSASAPAILRGSNNLDGTDDPGVRVR 119 Query: 123 SWLVPSMD---RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL-----MRGRNRLLT 174 L P F + R I F + + + Sbjct: 120 IALNPDYHGEYTEFVKDPSQVRLVPTEYYNVQWLGFSGNAITFRSIPAVASLIDATTIRL 179 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 D I + + RVE+ A SL E+ + I SL G Sbjct: 180 ASGADYHLQGIINNHLTD------GERVELTRAYRSLREEFSSNPSIEAINKSLEGQPGD 233 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 D++ + + ++ + PH DL + K GEQ Sbjct: 234 VSDRTLSLSIDVSQRSSWES----------NLVPHLDDLPFGFVGK---------GEQSS 274 Query: 295 V--LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMTGT 350 + L+ + + A I+L++E HL N L +++ Q+F+T Sbjct: 275 LKVLLAL--------NRKVQDAHIVLVEEPENHLSFTNLNQLVAKISEKCKDKQVFITTH 326 Query: 351 DKSVFDSLNETAKFM 365 V + L + F+ Sbjct: 327 SSYVLNKLGLDSLFL 341 >gi|220912980|ref|YP_002488289.1| chromosome segregation protein SMC [Arthrobacter chlorophenolicus A6] gi|219859858|gb|ACL40200.1| chromosome segregation protein SMC [Arthrobacter chlorophenolicus A6] Length = 1195 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTVRGFKSFASATTFDFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ A V D ++ +E + R L IN R Sbjct: 61 MEDVIFAGTSGRPPLGRAHVSLTIDNTDGALPIEYSEVTISRTLFRTGGSEYAINGAGCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +DR+ +RR F++ + R E Sbjct: 121 LLDIQELLSDSGMGREMHVIVGQGQLDRVLHATPEDRRGFIEEAAGILKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 R +R + + I Q+ LG + +AR Sbjct: 176 RTVRKLEAMQANLQRLTDLTGEIRRQLTPLGKQAEVARRA 215 >gi|294787079|ref|ZP_06752333.1| Smc [Parascardovia denticolens F0305] gi|315226731|ref|ZP_07868519.1| chromosome partitioning protein Smc [Parascardovia denticolens DSM 10105] gi|294485912|gb|EFG33546.1| Smc [Parascardovia denticolens F0305] gi|315120863|gb|EFT83995.1| chromosome partitioning protein Smc [Parascardovia denticolens DSM 10105] Length = 1225 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+NI++A++++ + R S Sbjct: 1 MYVKELTLRGFKSFANATTLRFEPGITAVVGPNGSGKSNIVDALAWVMGEQGAKTLRGTS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ S ++ + DI + + IN R Sbjct: 61 MEDVIFAGTSSRPPLGRAQVSLTIDNSDRTLDIDYSEVTISRTIYRNGGSEYAINGSPAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L H+ + +D I + R F++ + R E Sbjct: 121 LLDVQELLSDIGLGAHMHVVVGQGRLDSILRATPADNRAFIEEAAGILKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 R +R + I+ Q+ L + ++R Sbjct: 176 RALRKLQSTQENVERLDDLLTEIKRQLGPLRRQARVSRKA 215 >gi|124004628|ref|ZP_01689472.1| ATPase [Microscilla marina ATCC 23134] gi|123989751|gb|EAY29280.1| ATPase [Microscilla marina ATCC 23134] Length = 412 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 19/128 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------- 56 ++I + + FR Y + F I +G NG GKT +LEA++ + F Sbjct: 1 MRIDKIRLKNFRCYEETEIEFHPNFNIVIGINGTGKTAVLEALTVAA--GSFFLGIDYAE 58 Query: 57 -RRASYADV--------TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 R D+ P T+ + G E + V+ L+I + Sbjct: 59 NRHIRPEDIRVLSTEFDINEQFPVEVETWGVINGQEISWLRELTGPKNKTTYVKALKIKE 118 Query: 108 VVIRVVDE 115 + + Sbjct: 119 LAKEIQSR 126 >gi|188996887|ref|YP_001931138.1| SMC domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931954|gb|ACD66584.1| SMC domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 891 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 111/282 (39%), Gaps = 44/282 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + +K + + F + +L F T +G+NG GK++I+EAI F G + + D Sbjct: 1 MILKKIVLKNFLIHEDTQLEFSPNGITAIIGENGSGKSSIIEAIQFAFFGDS-DKGNLKD 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN----------------D 107 + + G A+VE D K+ +++ + + N Sbjct: 60 LIKWG-----RRQAKVELEFETKDGLYKVIKEINKTGKNVNTNSEIFIYENGRFRPYYQK 114 Query: 108 VVIRVVDELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMI 160 V +++ ++ + + ++ ++ I ER++ ++ ++ + + + + Sbjct: 115 EVNKILPKITRLTKKTFFTSVLIKQGEIEGILREKPSERKKIIEDLLNINLYRKIQEQFK 174 Query: 161 DFERLMRGRNRLLTEGYFDSS------WCSSIEAQMAELGVKINIARVEMINALSSLIME 214 + ++ ++ R +L E + + + Q+ +I + E +N + I + Sbjct: 175 ENQKRVKTRLDILQEDILKTDKIQIQQYLEELNNQL-----EILLKNYEGLNQKLNNIKQ 229 Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALK---EEYAKKLFD 253 +++ + S GK ++S +K E Y +L + Sbjct: 230 KLKEIEDQEKQASYLQSEIGKLEESIKNIKANIENYENQLKE 271 Score = 46.1 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 11/110 (10%) Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 L V + ++ S G++ + + + LA ARL + T L+LDE + HLD+++ Sbjct: 787 DALEVGASNIEVSSEALSGGQRIALAIALRLAIARLFNEKTD---FLILDEPTIHLDQER 843 Query: 331 RNALFRIVTDIGS-----QIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 + L ++ D Q+ + D+ V D + +++ + + Sbjct: 844 KRELIDLLGDFKEKNFLKQLIVITHDEEVEDRAD---LIYKVNKGRVEVV 890 >gi|86159644|ref|YP_466429.1| ATP-dependent OLD family endonuclease [Anaeromyxobacter dehalogenans 2CP-C] gi|85776155|gb|ABC82992.1| ATP-dependent endonuclease of the OLD family-like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 615 Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 54/350 (15%), Positives = 105/350 (30%), Gaps = 63/350 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L ++ FR++ + FD T+ G+N GKTN+LEA+ L+P S V Sbjct: 1 MYLSSLQLTRFRSFRDGTVYFDETLTVLAGENNSGKTNVLEALRLLTP------PSDGRV 54 Query: 65 TRIGSP-------SFFSTFARVEGMEGLADISIKLETRDDRS------VRCLQINDVVIR 111 R P FS ++ S R S ++ ++ Sbjct: 55 VRWPEPRDITRGFESFSIRGTYSALDDRQRGSFLTCLRGPTSDSASLGLQYAEVPGKRRG 114 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 + L + P + + + R R + + P ++ R Sbjct: 115 ERSRVVGPLDAPEIEPKARELVRHVHLPALRDASRELASSAPGRIEHLLRRTATDEQREA 174 Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 L+ + + + + ++ E + AL++ + + F Sbjct: 175 LVAKARQALELLKA-DPVIGAAEAQV----QEGVRALTAGVHPHEAHLGFA--------- 220 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 D + L D R L G +DL A Sbjct: 221 -----DPTLTDL------------ARDLRLRLGLAGMPAADLYESGLGYAN--------- 254 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 ++ + L L + + L++E AHL + + + D Sbjct: 255 ----VLFLALVVVELANTADADLTLFLVEEPEAHLHPQLQAVMLEYLRDK 300 >gi|256026771|ref|ZP_05440605.1| exonuclease SBCC [Fusobacterium sp. D11] Length = 231 Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 17/170 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62 + IK + + +R+++++ + F + +G NG GKT+ILEAIS + R Sbjct: 1 MIIKKVQLENYRSHSNITVEFTKGINLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVIRVVDELN 117 + G S + ++ + + + + + ++EL Sbjct: 61 SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMTGSEYDGDIQEKLEELC 120 Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157 + + IF +R +++ I Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 170 >gi|157737948|ref|YP_001490632.1| hypothetical protein Abu_1715 [Arcobacter butzleri RM4018] gi|157699802|gb|ABV67962.1| hypothetical protein Abu_1715 [Arcobacter butzleri RM4018] Length = 590 Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 62/384 (16%), Positives = 131/384 (34%), Gaps = 32/384 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFD--AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +K+K L ++ F+N + F+ T+ +G+NG GK+NILEAIS + ++ Sbjct: 1 MKLKRLWVNGFKNLKDFEINFESNEGITLLIGNNGSGKSNILEAISAIFVSLIEKKKVDF 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + + V+ + I L+ + +I+D+ + L + + Sbjct: 61 EY----EIEYILDVNEVDKNFYIELKIITLQNGNSEYTYSFKIDDLAKQKNQFLGNYNYL 116 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRNRLLTEGYFDSS 181 PS I + S E R D + ++ I +R + + + ++ + Sbjct: 117 ----PSH--IITSYSGEETRLWDLYYEKFYKDYIKKAITPTDRANHLKMIYVNKYHWKIA 170 Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + I I ++ N L L L + Sbjct: 171 FLLLAVYDRGDNSFIKNILKIDSVESIGFKFNIAKFPSFRNQAGELLRLARSLTPNNLPN 230 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIG---PHRS--------DLIVDYCDKAITIAHGS 288 + K +F + L+G P R D+ + + + S Sbjct: 231 VNYTNLDDIKTIFQNFGHERDLFLLLVGAFLPARDTNKLILDIDIKFKKLNVLLDVNCLS 290 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 GE+K++LV + L + ++LLDE +H+ + +V+ ++ + Sbjct: 291 EGEKKLILVKMILEYLSF------EKALVLLDEPDSHIHIQNKKVFKELVSSYENRFSIL 344 Query: 349 GTDKSVFDSLNETAKFMRISNHQA 372 T + ++N + Sbjct: 345 TTHSPTLTHSFDDKHISMLNNGKI 368 >gi|307298907|ref|ZP_07578709.1| SMC domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915332|gb|EFN45717.1| SMC domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 945 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 103/279 (36%), Gaps = 29/279 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ +++ FR+++ F+ + +G NG GK++I+EAI G G R D Sbjct: 1 MRVTSIDLENFRSHSRYSETFEKGINLILGRNGSGKSSIIEAIGLALFGGGLRDKQ-EDA 59 Query: 65 TRIGS--PSFFSTFARVEGMEGLADI------SIKLETRDDRSVRCLQINDVVIRVVDEL 116 + TF +G+E + S +L D R + IR++ L Sbjct: 60 IKWNERRSRITVTFLADDGLEYRVEKVFGTGSSHELHQGDLLIARGKENVIEKIRIICGL 119 Query: 117 NKHLR------ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----M 166 + I + F G RR + +R VF +D +R+ DF R + Sbjct: 120 QGDISKTFENVIVAFQNRIADQFLGSPAARRDYFNR-VFQVD-LYRKISTDFMRSYLTDL 177 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 R N + + +E Q+ RV+ ++ S E ++ K+ Sbjct: 178 RNENEAIERE------IAFMEQQLERKAE--VEERVKTLSGDLSRAKEELKSLEDALNKV 229 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 + + + + ++ +++ R + + L Sbjct: 230 KAERLRLEEIGRELSSKRAQFEQQMKSLRDEAASLKGNL 268 >gi|41409088|ref|NP_961924.1| hypothetical protein MAP2990c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397447|gb|AAS05307.1| Smc [Mycobacterium avium subsp. paratuberculosis K-10] Length = 1236 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 41 VYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 100 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 101 MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGASEYEINGSSCR 160 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D I +RR F++ + R E Sbjct: 161 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 215 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + +AR Sbjct: 216 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 255 >gi|305681389|ref|ZP_07404196.1| chromosome segregation protein SMC [Corynebacterium matruchotii ATCC 14266] gi|305659594|gb|EFM49094.1| chromosome segregation protein SMC [Corynebacterium matruchotii ATCC 14266] Length = 1198 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 99/276 (35%), Gaps = 37/276 (13%) Query: 2 TNRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFR 57 + +K L + F+++AS L F+ + VG NG GK+N+++A++++ + R Sbjct: 19 VTEVYLKSLTLRGFKSFASATTLKFEPGICVVVGPNGSGKSNVVDALAWVMGEQGAKTLR 78 Query: 58 RASYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDV 108 DV G+ ++ +G DI + R R +IN Sbjct: 79 GGKMEDVIFAGAGGRKPLGRAEVTLTIDNSDGALDIDYTEVSVTRRMFRDGASEYEINGS 138 Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 R++D + + + + + +I ERR F++ Sbjct: 139 KARLMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAFIEEAAG----------- 187 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 +++ R R S ++++ + +L ++ + + + + Sbjct: 188 ----VLKHRRRKEKAQRKLVSMQANLDR-LTDLTGELRRQLKPLARQAEAARRAATVQAD 242 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 +L L G+ + + + +E+ A L + Sbjct: 243 LREARLRLAGYELTQLQEKLGSAEEQTAMLLAQVEE 278 >gi|300741692|ref|ZP_07071713.1| Smc [Rothia dentocariosa M567] gi|300380877|gb|EFJ77439.1| Smc [Rothia dentocariosa M567] Length = 1205 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + + L + F+++AS F VG NG GK+NI++A++++ + R S Sbjct: 1 MHLTSLTLRGFKSFASSTTFEFAPGINAVVGPNGSGKSNIMDALAWVMGEQGAKTLRGGS 60 Query: 61 YADVTRIGSP------------SFFSTFARVEGMEGLADI---SIKLETRDDR-SVRCLQ 104 DV GS R++ +G I ++++ R + Sbjct: 61 MQDVIFAGSGTNGAENGGKSQLGRAQVVLRLDNTDGALSIPADTVEISRTMFRAGGSEYE 120 Query: 105 INDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 IN R+ D + + + + +D+I + ERR ++ + +R Sbjct: 121 INGSPARLADVHDILAEAGMGREMHVLIGQGQLDKILHASAAERREIMEEAAGILK--YR 178 Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216 RR R + + LT + + Q+ LG + L + I E Sbjct: 179 RRQDKTARKLEAMSANLTRLN---DLAAELSNQLKPLGDQ--AESAATARELQARIRELH 233 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 +L + + + E+A +L + R+ R+T Sbjct: 234 -GILIARETHALNAQVQEQTRRLSDT--SEHAHELDENREKIRTRRKT 278 >gi|256810611|ref|YP_003127980.1| SMC domain protein [Methanocaldococcus fervens AG86] gi|256793811|gb|ACV24480.1| SMC domain protein [Methanocaldococcus fervens AG86] Length = 1007 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 50/307 (16%), Positives = 112/307 (36%), Gaps = 30/307 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRR--ASY 61 + I + I+ F+++ + ++ F+ +G+NG GK++I EA+ F G RR +Y Sbjct: 1 MIINSITINNFKSHVNTKITFNDGIIAIIGENGSGKSSIFEAMFFALFGADALRRMGLTY 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRVVD 114 ++ G + ++ + E S + + N+ V R + Sbjct: 61 DEIITKGKKA---MSVELDFEVNGNSYKVVREYDGRSSAKLYKNNELYAKTVNEVNRAIS 117 Query: 115 ELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 E+ + +L + + + +R+ + +++ D + ++ Sbjct: 118 EILGVDKDMFLNSIYIKQGEIANLLNLPPADRKEVIGKLLGIDD--FEKCYQKMRDVINE 175 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 L E + S+ E + E ++ E + + + I + K + K Sbjct: 176 YRNQLKEVEVNLSYKEKFEKDLKEKENQLAEKEKE-LERIKANIDKI--KTEYETAK--- 229 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 F++ K +S L E+ KL + K + + L V ++ + G Sbjct: 230 KNFVEWKEKKS---LYEKLINKLEEREKALELEKNKLKNLKYDLDEVLKANEILKSHKGE 286 Query: 289 TGEQKVV 295 GE K + Sbjct: 287 YGEYKSL 293 Score = 42.2 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QI 345 S GEQ V + + LA A + ++LDE + +LDE++R L I I S Q+ Sbjct: 917 SGGEQIAVALSLRLAIANAL--IGNKVECIILDEPTVYLDENRRAKLAEIFRKINSVPQM 974 Query: 346 FMTGTDKSVFDSLNETAKFMRISNHQALC 374 + T + + +T + ++ + + Sbjct: 975 II-ITHHRELEEVADT--IVNVTKERGVS 1000 >gi|323359696|ref|YP_004226092.1| chromosome segregation ATPase [Microbacterium testaceum StLB037] gi|323276067|dbj|BAJ76212.1| chromosome segregation ATPase [Microbacterium testaceum StLB037] Length = 1173 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 112/312 (35%), Gaps = 53/312 (16%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++A S + T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSVTLKGFKSFAQSTTFALEPGVTCIVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G S A V+ +D ++ ++ + R L IN R Sbjct: 61 MEDVIFAGTSTRGPLGRAEVQLTIDNSDGALPIDYSEVTISRTLFRTGASEYAINGQTSR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + + +RR F++ + R E Sbjct: 121 LLDVQELLSDSGLGREMHVIIGQGRLDTVLQATAEDRRGFIEEAAGILKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-----------------IN 206 + +R + T S + Q+ LG + IAR + Sbjct: 176 KTVRKLEAMETNLTRLSDLAGELRRQLKPLGKQAEIAREAATIAAVVRDAKARLFADELV 235 Query: 207 ALSSLIMEYVQKENFPH-IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK--------M 257 L + + + EN H +L L +G + +E+ ++ + R+ Sbjct: 236 RLRGQLADAARAENERHTERLVLQEQAEGLRHRVERLEEEQRSEAVDKARRVAFSLEQVQ 295 Query: 258 DSMSR-RTLIGP 268 + + TL G Sbjct: 296 ERLRGLYTLAGQ 307 >gi|257790558|ref|YP_003181164.1| SMC domain-containing protein [Eggerthella lenta DSM 2243] gi|257474455|gb|ACV54775.1| SMC domain protein [Eggerthella lenta DSM 2243] Length = 564 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 63/366 (17%), Positives = 117/366 (31%), Gaps = 54/366 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L I +R+ L L + +F+G N VGK+NIL A+ +L G + + + Sbjct: 1 MKIDKLTIKNYRSVRDLELSLSPRINVFIGANNVGKSNILSAMEYL-LGPSY--PTANRL 57 Query: 65 TRI----GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R G A R L N I DE+ Sbjct: 58 ERWDFYQGDEELPLKIALDFDDGAHLSFDSTWHDGYGREKHGLNYNGSYIS--DEVRSRY 115 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + + P RR LD + R+++ N L+E S Sbjct: 116 ISASIGPD------------RRVLDNPAS-------SQWSLLGRMLKEFNERLSEETISS 156 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + ++ A + + + I+ + ++ ++ L+ + + Sbjct: 157 ADGHTVTK---------AEAFKQSMQEIRDQILFSITDQDGTNLMGELSRIMQQETANQL 207 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + L + ++ + I + V + + G Q + + I Sbjct: 208 NCSPNDLTVDL-NAYDPWNLYKTLQIFVTEQETGVQMRASDMGM-----GVQASLTIAIL 261 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTG-----TDK 352 A+++L L +DE +L R + D G+QIF+T D Sbjct: 262 RAYSKL---KLKNQTPLFIDEPELYLHPQARRKFYRVIEELADSGTQIFLTTHSTEFIDL 318 Query: 353 SVFDSL 358 FD + Sbjct: 319 GNFDQI 324 >gi|150401140|ref|YP_001324906.1| SMC domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013843|gb|ABR56294.1| SMC domain protein [Methanococcus aeolicus Nankai-3] Length = 994 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 71/178 (39%), Gaps = 22/178 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK +NI FR++++ + F T +G+NG GK++I EA+++ RR +D Sbjct: 1 MIIKNINIKNFRSHSNTDISFKQGITTIIGENGSGKSSIFEAMNYALFAP--RRIKLSDA 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIRVVDEL 116 + G+ FFS E + + R +++ L ND V + E+ Sbjct: 59 IKRGTD-FFSISFEFEINGKRYKV---IRGRGKKNINYLYENDKPYSENNDEVNNKIKEI 114 Query: 117 NKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + + + ER++ + +++ R+ + + ++ Sbjct: 115 LNMDDEVFSNAIYIKQGDISSLIQITPAERKKLIGKLLG--IERYEQVWDKLKTPLKN 170 Score = 41.8 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 7/80 (8%) Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 ++D + D + G GEQ V + I + A+ + + ++LDE +A LDE+ Sbjct: 891 KNDYDITVDDNPVKTLSG--GEQIAVALAIRIGIAKAVCSDLN---CIILDEPTAFLDEN 945 Query: 330 KRNALFRIVTDIG--SQIFM 347 +R+ L R+ +I SQIF+ Sbjct: 946 RRHNLLRVFRNIKSLSQIFV 965 >gi|229815432|ref|ZP_04445764.1| hypothetical protein COLINT_02480 [Collinsella intestinalis DSM 13280] gi|229808965|gb|EEP44735.1| hypothetical protein COLINT_02480 [Collinsella intestinalis DSM 13280] Length = 1178 Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 67/366 (18%), Positives = 124/366 (33%), Gaps = 45/366 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A + F+ T+ VG NG GK+N+ +AI L + R + Sbjct: 1 MYLKSLTLKGFKSFADRAHMTFEPGLTVIVGPNGSGKSNVSDAILWVLGEQSAKQLRGQA 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV GS + ++ + + + + + R RS IN R Sbjct: 61 MEDVIFSGSSARKPVGVAEVTLVLDNSDHMLPVDFDEVAITRRMYRSGESEYLINSSPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L K +D I ERR ++ + E Sbjct: 121 LMDIQDILHDSGLGKDTHSIISQGKLDAILQSRPEERRSLIEEAAGISKHK-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R + I Q+ L +++ AR LS+ E Q Sbjct: 176 RALRKIKSMDEHLTRARDINREISRQLKPLERQVDRARKY--KDLSARANELTQILAVDE 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 ++ ++D + A E A+ ++ + L V +K + Sbjct: 234 LRQLQAQWVDLESASRESAAAFELARYRLSEKERELEK-----------LQVMLEEKGLF 282 Query: 284 IAHGSTGEQKVVL--VGIFLAHARLISNTTGFAPILLLDEISAHL--DEDKRNALFRIVT 339 + GEQ+ + V + + G + L E+ L E +R ++ Sbjct: 283 VGDL--GEQRRHMQDVVGRIGSDMRLLEEKGRNMVARLSEMRGTLSASEHQRKRTLEELS 340 Query: 340 DIGSQI 345 DI Q+ Sbjct: 341 DINRQL 346 >gi|148380046|ref|YP_001254587.1| hypothetical protein CBO2090 [Clostridium botulinum A str. ATCC 3502] gi|153931048|ref|YP_001384342.1| hypothetical protein CLB_2027 [Clostridium botulinum A str. ATCC 19397] gi|153937844|ref|YP_001387879.1| hypothetical protein CLC_2032 [Clostridium botulinum A str. Hall] gi|148289530|emb|CAL83630.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152927092|gb|ABS32592.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152933758|gb|ABS39257.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] Length = 679 Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 66/398 (16%), Positives = 138/398 (34%), Gaps = 69/398 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I+ FR Y + + F+ I +G+N GKT I+ A+ ++ R R ++ Sbjct: 1 MYISKLEINNFRCYEDVDIEFNEGLNIIIGENNCGKTTIMRALEYI-FNRS-RVSTP--- 55 Query: 65 TRIGSPSFFSTFAR--VEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKH 119 + F +E E +I+I + S + + + ++ Sbjct: 56 ---DTNDFNKELVNKALEIGEQPPEITIIATLKSSSSDKLEDKAVVASWLTKLETPWEAT 112 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-RMIDFERLMR----------- 167 L + +P D E + + + + + + R FE+ ++ Sbjct: 113 LTYKFFLPESDI------KEYKEEI-KSIKKSQKNYIQKRWNIFEKYLKKYVSRIYGGNS 165 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKL 226 + Y + C ++A + ++ K+ + ++ + + +++ E+ Sbjct: 166 ESKNKVESEYLNKFHCELLDA-LRDVESKMFTGKNALLKEVLGYFKDSHIEIEDGDEFSE 224 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM--------DSMSRR--------TLIGPHR 270 L K + +EYA K+ D + TL G Sbjct: 225 EDKKKLIEKEKKDRKKEFDEYADKIVKNISKRVGNNDVLDFAEKTGASIGGIPTLGGNLE 284 Query: 271 SDLIVDYCDKAITIAHGST--------GEQKVVLVGIFLAHARLI-SNTTGFA----PIL 317 + ++ I G G ++ + + L+ ++I S+ G PIL Sbjct: 285 ENDVLSVLKLMIKNKTGIEVPIINNGMGYNNLIYISLLLSKFKMITSDEYGENAKVFPIL 344 Query: 318 LLDEISAHLDEDKRNALFRIVTD------IGSQIFMTG 349 L++E AHL + + + D I QIF+T Sbjct: 345 LVEEPEAHLHPALQYNFLKFLKDEVSNQKISRQIFITT 382 >gi|28872226|ref|NP_794845.1| hypothetical protein PSPTO_5113 [Pseudomonas syringae pv. tomato str. DC3000] gi|28855480|gb|AAO58540.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] Length = 422 Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 51/389 (13%), Positives = 117/389 (30%), Gaps = 71/389 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L + FR Y F + VG NG GKT++L ++ + Sbjct: 1 MRLDHLRLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGVAEC-------------L 47 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ + + + D+ ++ + RS + Sbjct: 48 IPYGN-----AMGQGQEILSKEDVRFVIDRHEGRSRFERK-----------------FPV 85 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR-------LLTEGY 177 + + IF + R L+ +DP + ++ N +L Sbjct: 86 FIRADGDIFDLPNWRAVRLLEPWEGGVDPSSLSHLSA---VLARNNAGEQIDFPVLAFYR 142 Query: 178 FDSSWCSSIEAQMAELGVKINIAR-------VEMINALSSLIMEYVQKENFPHIKLSLTG 230 + W S+ AE + +R + + L ++ ++ L Sbjct: 143 ANRRWSSA--RISAEFAAQQRTSRFDGYANWFDAVADLRD-FESWLIARTLERLQDRLDS 199 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + + + D + R + L+ A+ S G Sbjct: 200 TPTVEREDELEWVNRAIRLAIPDAHDLRYDLRLQSL------LVDMGEGNAVPFHELSDG 253 Query: 291 EQKVVLVGIFLAHAR-LISNTTGFAP------ILLLDEISAHLDEDKRNALFRIVTDI-- 341 ++ ++ + +A +++ G I+++DE+ HL + + + Sbjct: 254 QRSLIALIADIARRMCVLNPHIGKDVLANTGGIVIIDELDIHLHPAWQRNIAPTLKKAFP 313 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNH 370 Q T V SL + + + + N Sbjct: 314 KVQFIATSHSPQVIGSL-QPGEVILLKNG 341 >gi|297204891|ref|ZP_06922288.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|297148792|gb|EDY55698.2| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 618 Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 62/391 (15%), Positives = 122/391 (31%), Gaps = 56/391 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ L++S FR+ + + + TI G N GKT L+AI+ L G R +D+ Sbjct: 1 MRLVELSVSNFRSLGHVESIPIHKQTILTGHNDCGKTATLDAIAVLL---GERSIIDSDI 57 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + E ++++ + +RV + R Sbjct: 58 SDFAEAEPVRAALPADQDEEQRTVTVEGRFALSAAEEKALDTGPFLRVRRRHVEGGRSCL 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 R I P + D + L + Sbjct: 118 ---EWLTEVPRNPALR---------DIAPLKAGELRDLASEL-----GLKLPEGKPNVKD 160 Query: 185 SIEAQMAELGV-------KINIARVEMINALSSLIMEYVQKENFPHIKLSL-------TG 230 S + E +A + +AL L+ P + Sbjct: 161 SWAELLKEHAAGTDDKVTDWVVAPEAVASALPQLLYFKGDAAESPEAVVRSILTAKLREY 220 Query: 231 FLDGKFDQSFCALKEEYAKKLFDG--RKMDSMSRRTLIGPHRSDLIVDY----------- 277 L + + L+EE+A L D R + R D V + Sbjct: 221 TLREETRKKITDLEEEFAALLKDDVIRLQKLVEERCAFDAFTVDPGVQFRPTVNSLSLTA 280 Query: 278 ---CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT--GFAPILLLDEISAHLDEDKRN 332 +A+++ +G + V + ++ A L+S + G I+ DE HLD D + Sbjct: 281 AAPGQRAVSLTAAGSGRSRRVSLALWEASQELLSEDSDEGPGVIIAYDEPDTHLDYDHQR 340 Query: 333 ALFRIV----TDIGSQIFMTGTDKSVFDSLN 359 + +I+ + S + + ++ D ++ Sbjct: 341 RIMQIIKVSASAAQSTVIVATHSLNLIDGVD 371 >gi|300933890|ref|ZP_07149146.1| chromosome segregation protein [Corynebacterium resistens DSM 45100] Length = 1162 Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 96/273 (35%), Gaps = 35/273 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASSTTLKLEPGICAVVGPNGSGKSNVVDALAWVMGEHSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALPIEYTEVSVTRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + +I ERR F++ + R E Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + R + + D + Q+ L + + A+ + + + I E + Sbjct: 176 KA--QRKLVSMQANLDRLHDLTDELHNQLGPLARQADAAQKA--STVQATIRETKVQLAA 231 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 +K T D S + E ++L D Sbjct: 232 HQVK---TLSADLSDATSRAEMAAEQVEELQDA 261 >gi|295396040|ref|ZP_06806224.1| chromosome segregation protein Smc [Brevibacterium mcbrellneri ATCC 49030] gi|294971128|gb|EFG47019.1| chromosome segregation protein Smc [Brevibacterium mcbrellneri ATCC 49030] Length = 1170 Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 89/262 (33%), Gaps = 27/262 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A L + T VG NG GK+N+++A++++ + R Sbjct: 1 MFLKTLTMRGFKSFAHATTLELEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRS-VRCLQINDVVIR 111 DV G+ ++ +G I + + RS +N R Sbjct: 61 MDDVIFAGTAKKQGLGRAEVSLTIDNTDGAIPIDYTEVTISRTLFRSGGSEYSVNGAPAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L K + + +D I RR F++ + R + Sbjct: 121 LLDIQELLNDSGLGKEMHVIVGQGRLDEILHADPETRRGFIEEAAGVLKHR-----RRKD 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEYVQKENFP 222 + +R L T + Q+ L + A R + A + ++ Sbjct: 176 KALRKLTGLQTNLDRVGDLRHELSKQLGPLARQAKAATRAATVQAQLRDATARLLADDIV 235 Query: 223 HIKLSLTGFLDGKFDQSFCALK 244 ++ L + + L+ Sbjct: 236 RVQAKLEATHTTEDETIRQELE 257 >gi|294815357|ref|ZP_06774000.1| SMC_N multi-domain protein [Streptomyces clavuligerus ATCC 27064] gi|294327956|gb|EFG09599.1| SMC_N multi-domain protein [Streptomyces clavuligerus ATCC 27064] Length = 1371 Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 97/311 (31%), Gaps = 50/311 (16%) Query: 11 NISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYADVTR 66 + F+++AS L F+ T VG NG GK+N+++A+S++ + R DV Sbjct: 2 TLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGKMEDVIF 61 Query: 67 IGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIRVVDE-- 115 G+ ++ +G I QIN R++D Sbjct: 62 AGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCRLLDIQE 121 Query: 116 ------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + + + + +D + M RR F++ + R E+ +R Sbjct: 122 LLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKEKALRKL 176 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMIN----ALSSLI 212 + + Q+ LG + AR+ ++ L + Sbjct: 177 ESMKANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLVRLQRAL 236 Query: 213 MEYVQKE-------NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 + E +L + + + AL + ++ ++ RT Sbjct: 237 RAEIADEAALKARKEAAEARLKAALAREAELEGEVRALVPRLQRAQQTWYELSQLAERTR 296 Query: 266 IGPHRSDLIVD 276 ++ V Sbjct: 297 GTVSLAEARVK 307 >gi|319948357|ref|ZP_08022501.1| chromosome segregation protein SMC [Dietzia cinnamea P4] gi|319437988|gb|EFV92964.1| chromosome segregation protein SMC [Dietzia cinnamea P4] Length = 234 Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 30/222 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLKFEPGICCVVGPNGSGKSNVVDALTWVMGEHSAKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDR-SVRCLQINDVVIR 111 DV G+ ++ +G I + L R R +IN R Sbjct: 61 MQDVIFAGTAGKQPLGRAEVTLTLDNSDGALPIDYAEVSLTRRMFRDGAAEYEINGDRAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I ERR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLAEILESKPEERRAFIEEAAGILKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVE 203 + R +G D + + Q+ LG + +AR Sbjct: 176 KA--QRKLAGMQGNLDRLTDLTTELRRQLKPLGRQAEVARRA 215 >gi|251791673|ref|YP_003006394.1| SMC domain-containing protein [Dickeya zeae Ech1591] gi|247540294|gb|ACT08915.1| SMC domain protein [Dickeya zeae Ech1591] Length = 482 Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 64/409 (15%), Positives = 125/409 (30%), Gaps = 45/409 (11%) Query: 5 IKIKFLNISE---FRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 +KIK + F + +L + + T+ VG+NG GKT+IL+A++ R Sbjct: 1 MKIKQFRLHHVGRFTSLDALIAPTADYPSNVTVLVGNNGAGKTSILQALATSLSWLVARV 60 Query: 59 ASYA--------DVTRIGSPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRCLQI 105 S D G S + G + ++ + Q+ Sbjct: 61 RSDKGSGSVISEDTITNGQTSAAIEVMVRDAPPPSGNDAEYHWTLAKARSGKKGQHASQL 120 Query: 106 NDVVIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 N V L H R + + + +ER LD + + H +++ ++ Sbjct: 121 N-----AVSALADHYRTALTQNEKSSLPLIAFYPVER-SVLDIPLKIRNKHHFQQIDGYD 174 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + + I E + + I + + N Sbjct: 175 NALNQGVDFRRFFEWFREREDIENENDETVLTNIFENSPEGVLKVLDDIEKADDRINKLA 234 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY------ 277 + K + ++ K D + S T P S+L V Sbjct: 235 EYDFAGLSEEVKKLVNTMKFMQDIRDKAKDPQLNAVRSAITAFMPGFSNLRVRRKPRLHM 294 Query: 278 ----CDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDE 328 +A + S GE+ ++ + LA + N I+L+DE+ HL Sbjct: 295 SVDKNGEAFNVLQLSQGEKSLMALVGDIARRLAIMNPALDNPLHGQGIVLIDEVDMHLHP 354 Query: 329 DKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 + ++ +T Q +T V + + N + + Sbjct: 355 SWQRSIIERLTTTFPNCQFILTTHSPLVISDYKDVL-VYSLDNGELTVV 402 >gi|210622530|ref|ZP_03293223.1| hypothetical protein CLOHIR_01171 [Clostridium hiranonis DSM 13275] gi|210154165|gb|EEA85171.1| hypothetical protein CLOHIR_01171 [Clostridium hiranonis DSM 13275] Length = 1184 Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 98/284 (34%), Gaps = 30/284 (10%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++ +VF T VG NG GK+NI +A+ L + R Sbjct: 1 MYLKELELKGFKSFPEKTDIVFKNGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV GS ++ ++ +G DI T R+ R +N R Sbjct: 61 LEDVIFAGSDKKKPMNYCEVSLTIDNSDGEIDIEFTELTIKRRAYRNGESQFFLNGKPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D I S RR+ D +R + + E Sbjct: 121 LKDIKELFLDTGIGKDSYSIIEQGKVDEILSNNPGVRRKVFDEACGIAK--YRYKKQEAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM-INALSSLIMEYV 216 R ++ + L + AE ++I+ E+ +N+ I + Sbjct: 179 RNLKNTSENLERINDIYIEIEKQINPLKNQKEKAEKFLEISGRLKELEVNSFLREINKID 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 ++ + L + ++ L++EY + +D Sbjct: 239 KEAGEIKLALEESENKINTGEEKSKTLEKEYEDLKLESEVLDEE 282 >gi|325001482|ref|ZP_08122594.1| chromosome segregation protein SMC [Pseudonocardia sp. P1] Length = 440 Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AIS++ + R Sbjct: 1 MHLKTLTMKGFKSFASATTLRLEPGITCVVGPNGSGKSNVVDAISWVLGEQGAKALRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTSGRSALGRAEVTLTIDNSDGALPIDYSEVSVTRRMFRDGAGEYEINGARAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + +RR +++ + R E Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDGVLQSKPEDRRAYIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ LG + IAR Sbjct: 176 KALRKLDAMQANLTRLTDLTAELRRQLKPLGRQAEIARKA 215 >gi|227504759|ref|ZP_03934808.1| chromosome segregation protein Smc [Corynebacterium striatum ATCC 6940] gi|227198609|gb|EEI78657.1| chromosome segregation protein Smc [Corynebacterium striatum ATCC 6940] Length = 1180 Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 93/287 (32%), Gaps = 33/287 (11%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATNLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MQDVIFAGAGDRKALGRAEVTLTIDNSDGALPIDYSEVSVTRRMFRDGASEYEINGSKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I + I +RR +++ + R E Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLAEILESRPEDRRAYIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKEN 220 + R + D + Q+ L + R + A + + Sbjct: 176 KA--QRKLTGMQANLDRLQDLTDELGKQLKPLARQAEAAKRAATVQADLRDARLRIAGDQ 233 Query: 221 FPHIKLSLTGFLDGK--FDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 ++ + + E+ + ++++ T+ Sbjct: 234 VVQLRKKFADAKHQAAMLAEQVAEITEQLEEASGVQLEIEAELGETI 280 >gi|242398089|ref|YP_002993513.1| DNA double-strand break repair rad50 ATPase [Thermococcus sibiricus MM 739] gi|242264482|gb|ACS89164.1| DNA double-strand break repair rad50 ATPase [Thermococcus sibiricus MM 739] Length = 895 Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 57/350 (16%), Positives = 118/350 (33%), Gaps = 31/350 (8%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS---FLSPGRGFRRAS 60 +++I+ L I FR + + + F+ + +G NG GK++ILEA+ +L G F R Sbjct: 8 KMRIRSLKIKNFRAHENSHVEFNDGINLIIGQNGSGKSSILEAVFASLYLGHG-SFPRGY 66 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 TRIG S F + E +I R L+ N V+ D Sbjct: 67 KKVNTRIG-KSGFELVLKFEHNGKNYEI-----VRKSNGESYLKENGGVLHEKDSDIARW 120 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA---IDPRHRRRMI--DFERLMRGRNRLLTE 175 +L P +F R+ ++ ++ + R+ + DFE +L E Sbjct: 121 SERYLYP--LHVFRNALYIRQGEIENILVDEDVREKVLRKVLGIEDFENSANNAQEVLRE 178 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 + ++ + I E L +I + + + + Sbjct: 179 LRKKREYL----EKLIQASGDIQNKIKEQEKRLGEVIHKINELRKKEIETAEKLSAVSKR 234 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 +++ +KE +K + ++ ++ + + +K + + G Sbjct: 235 YEE-LKEIKEILTQKEKEKLSVEGSMKKLEADIKNTRDRIAELEKELRVLRDKEG----- 288 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 L + L++ E +++ L + + QI Sbjct: 289 ----RLKEIEWVKKEYETLNALMVKRKELQEIELRKSRLEERIKVLQKQI 334 Score = 41.4 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 108/303 (35%), Gaps = 19/303 (6%) Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-LNKHL 120 A+V F +F VE + K + +QI + +++ L Sbjct: 581 AEVLHEIEEKGFESFEDVEKRLKELEPLYKEYISLSNVPQEIQIREKRQELLETTLKDKE 640 Query: 121 RISWLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG--RNRLLTEGY 177 + L ++ ++ S + RF I + +++ N L E Sbjct: 641 KDLNLTKNVFKMLSKEIEELKVRFTVEEFEKISKEYLSLSSLHAAVLKEIEGNENLKEEV 700 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + ++ Q+ +K E+I + + + +K + G + + Sbjct: 701 ARN--LEDLKRQL--EAIKKAKEESELIEKMMADMKVLREKLLKLKAEAERRGLSEV--E 754 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 + L + ++ + G K+ + G R ++V Y + I S GE+ + + Sbjct: 755 RVASELFSDMTERKYQGIKIIREKK---FGRERIRIVVLYQGQEEEIDFLSGGERIALGL 811 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD---IGSQIFMTGTDKSV 354 LA + +L+LDE + LDE++R L I+T Q+ + D+ + Sbjct: 812 SFRLALSLY---KVKNMELLILDEPTPFLDEERRKKLVEIITQHLRKIPQVIIVSHDEEL 868 Query: 355 FDS 357 D+ Sbjct: 869 KDA 871 >gi|15827858|ref|NP_302121.1| cell division protein [Mycobacterium leprae TN] gi|221230335|ref|YP_002503751.1| putative cell division protein [Mycobacterium leprae Br4923] gi|18202761|sp|Q9CBT5|SMC_MYCLE RecName: Full=Chromosome partition protein smc gi|13093410|emb|CAC30580.1| possible cell division protein [Mycobacterium leprae] gi|219933442|emb|CAR71724.1| possible cell division protein [Mycobacterium leprae Br4923] Length = 1203 Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 26/220 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ T VG NG GK+N+++A++++ + R + Sbjct: 1 MYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + + I + R R +IN R Sbjct: 61 MEDVIFAGTLSRAPLGRAEVTLIIDNSDNVLPIEYSEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D+I +RR F++ + E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDQILQSRPEDRRTFIEEAAGI-----LKYRRRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + +R + + + + + Q+ L + +AR Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLSRQAEVARRA 215 >gi|325918051|ref|ZP_08180212.1| RecF/RecN/SMC N-terminal domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325535748|gb|EGD07583.1| RecF/RecN/SMC N-terminal domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 526 Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 63/386 (16%), Positives = 116/386 (30%), Gaps = 58/386 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + I F+++ L L +A + VGDN VGK+ +LEAI + G+ R ++ Sbjct: 1 MPIERIVIDNFKSFRHLDLPLNAHMNLVVGDNEVGKSTLLEAIHAVVTGQLHGRNLAYEL 60 Query: 65 T--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 T P+ A + + I +E + L Sbjct: 61 TPYLFHQPTVQEYLATLAAGTPASPPRISVEAYLGGDA-----------ALASLRGTNNS 109 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRGRNRLLTEGY 177 L + R+ L+ + R + + P + + Sbjct: 110 LRLDTAGIRLLVELNDDYREEFNAYLQQHQGAVSLPVEYYTVRWYSFA--NNGVTARSIP 167 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KF 236 FDS+ + G+K I + + Q+ + + LS Sbjct: 168 FDSTIIDT-------HGIKTLSGADRYIAGIIEQALTPAQRVS---LSLSFRRMRRSFSE 217 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHG 287 + A+ + D T + P+ +L K Sbjct: 218 EADVAAINAYLTEHTGDISHRALTVGVDTSPRSTWETSLSPYLDELPFTQAGK------- 270 Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQI 345 GEQ V + LA + G A +LL++E HL L + + Q+ Sbjct: 271 --GEQ--SAVKMKLA-----MHAAGAAHVLLIEEPENHLSFSSMTQLIDKIAALSTAQQV 321 Query: 346 FMTGTDKSVFDSLNETAKFMRISNHQ 371 + V + L + + Q Sbjct: 322 IIATHSSFVLNKLGVDNVILFSAQGQ 347 >gi|269219660|ref|ZP_06163514.1| Smc protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269210902|gb|EEZ77242.1| Smc protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 1185 Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 99/274 (36%), Gaps = 34/274 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ VG NG GK+N+++A++++ + R + Sbjct: 3 VHLKSLTLRGFKSFATATTLRFEPGINCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGN 62 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRS-VRCLQINDVVIR 111 ADV G+ ++ +G+ I + + RS IN R Sbjct: 63 MADVIFAGTSKRPALGRAEVSLTIDNSDGVLPIDYTEVTISRTLFRSGGSEYAINGTSCR 122 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + + +RR F++ + R E Sbjct: 123 LLDIQELLSDTGMGREMHVIIGQGKLDEVLKAGAEDRRGFIEEAAGVLKHR-----RRKE 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + +R + + + Q+ L + AR + + + + + Sbjct: 178 KALRKLESMSGSLARIEDLSAELRRQLGPLARQAEAARKAQV--MQAEARDARARLLADD 235 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 + + D+S + +++ GR Sbjct: 236 LAQQQARVESHEVDES------KLSERRAAGRAR 263 >gi|11499153|ref|NP_070387.1| chromosome segregation protein (smc1) [Archaeoglobus fulgidus DSM 4304] gi|2649004|gb|AAB89690.1| chromosome segregation protein (smc1) [Archaeoglobus fulgidus DSM 4304] Length = 1156 Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 97/274 (35%), Gaps = 41/274 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRA 59 + I+ + + F+++ + F T+ G NG GK+NI+++I F + + R Sbjct: 1 MHIEKIRLKNFKSFGKKAEIPFFKGFTVITGPNGSGKSNIIDSILFCLGLSTSTKQLRAE 60 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 D+ G E +I+ K++ + +N + + E++ Sbjct: 61 RLTDLVHNGRSEAEVAILFSENG-KKYEIARKVKITEKGYYSYYYLNGKSV-SLSEIHSF 118 Query: 120 LRI---------SWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRG 168 L + + RI +RR+ +D + D + + + + ER+ Sbjct: 119 LSQFGIYSDAYNVVMQGDVTRIIEMSPFQRRKIIDDVAGISEFDEKKEKALEELERV--- 175 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 +EA +AE+ + + L E ++ + K Sbjct: 176 -----------RESIEKLEAVIAEVNDR--------LQTLERDRNEAIRYKEILSKKEEY 216 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMS 261 G+L + KE+ ++L R+ D ++ Sbjct: 217 EGYLRAHNYLTAVKSKEKVERELERLERQKDELT 250 >gi|284161167|ref|YP_003399790.1| chromosome segregation protein SMC [Archaeoglobus profundus DSM 5631] gi|284011164|gb|ADB57117.1| chromosome segregation protein SMC [Archaeoglobus profundus DSM 5631] Length = 1135 Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 17/154 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 + I+ + + F+++ + F T+ G NG GK+NI+++I F S + R Sbjct: 1 MFIRKIKLRNFKSFKKAEIEFRDNFTVITGPNGSGKSNIIDSILFCFGISSSKTLRADKL 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 D+ + G T ++G + + D IN + ++ + + Sbjct: 61 TDLIKHGQKEAEVTI-ELDGYIVRRRV----KKTDKGYYSYYYINGKSV-SYSDIERLIE 114 Query: 122 ISWLVPSMDRIFSGL--------SMERRRFLDRM 147 L + + G ++RR+ ++ + Sbjct: 115 KLGLNTEYNIVMQGDVTRVAEMTPIQRRKIIEDI 148 >gi|13541058|ref|NP_110746.1| chromosome segregation protein [Thermoplasma volcanium GSS1] gi|18202324|sp|P58302|RAD50_THEVO RecName: Full=DNA double-strand break repair rad50 ATPase gi|14324442|dbj|BAB59370.1| purine NTPase [Thermoplasma volcanium GSS1] Length = 895 Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 102/275 (37%), Gaps = 33/275 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + F +++ + FD + +G NG GK++I++AI F R D+ Sbjct: 1 MIIERIRLRNFLSHSDSDIYFDTGINMIIGQNGAGKSSIVDAIRFALFSDK-RTRRTEDM 59 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVVDELNKHLRI 122 + G + R EG +I+ + + ++ + +I R +++ ++ Sbjct: 60 IKKGERYMEVELYFRSEGHSYRIRRTIERRGKSISTDAEIERDGSIITRGASDVSNYVEK 119 Query: 123 --------SWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 +L MD + S ER++ LD + ID + L++ Sbjct: 120 NVLNINKDVFLTSIFVRQGEMDALVSKDPAERKKILD-EILNIDRLEAGYL-----LLKE 173 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 ++ + + S ++ ++ +I+ + I L S + + ++++ Sbjct: 174 ---VIDDLTANVSDYDYLKNELQSKINEIDNN-NKQIEELESKLRLIEPEIKALEEEINI 229 Query: 229 TGFLDGKFDQSFCALKEE------YAKKLFDGRKM 257 ++ L + Y +L + + Sbjct: 230 KENKKDHLNEELHRLNAQLETIKKYEMELAESQSR 264 Score = 38.0 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 5/174 (2%) Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 ++ + L + D S+ + + K+NIA ++ L E + K + Sbjct: 683 LKQLSSRLDKINVDQYEWKSLHKVLLQDNEKLNIAVADIRKRLEK--KETIIKAIADLKR 740 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 + DG + E + + + + ++ V A I Sbjct: 741 VREAFSKDGVPAIIRKSASEFITNQTRQYIQRFELDIDDVDVDQDFNITVFRGGIAEGID 800 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 S GE+ V + +A A+ ++ +L++DE +A LDED+R+ L I+ Sbjct: 801 SLSGGERMAVAFALRVAIAQFLNK---DVSLLVMDEPTAFLDEDRRSDLANIIE 851 >gi|227503346|ref|ZP_03933395.1| chromosome segregation protein Smc [Corynebacterium accolens ATCC 49725] gi|227075849|gb|EEI13812.1| chromosome segregation protein Smc [Corynebacterium accolens ATCC 49725] Length = 1176 Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 107/328 (32%), Gaps = 59/328 (17%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + + R Sbjct: 1 MHLKSLTLKGFKSFASATSLKFEPGICAVVGPNGSGKSNVVDALAWVMGEASAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MQDVIFAGAGDRKQLGRAEVTLTIDNADGALPIEYSEVSVTRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I + I +RR +++ + R R+ + Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLSEILESRPEDRRSYIEEAAGVLKHRRRKEKAQRK 180 Query: 164 RLMRGRNRLLTEGYFDS--------------------SWCSSIEAQMAELGVKINIARVE 203 N + D +A++ G +I R + Sbjct: 181 LTGMQANLDRLQDLTDELGKQLKPLARQAEAAQRAATVQADVRDARLRLAGDRIVGLRQK 240 Query: 204 MIN------ALSSLIMEYVQKEN------------FPHIKLSLTGFLDGKFDQSFCALKE 245 + ALS+ + E + + FD S + + Sbjct: 241 LSAAEQTATALSTQVEETTAQLEEATEHQMELETQLEEVNPQAESAQKLWFDLSTLSERI 300 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 +++ + R ++ S+ G DL Sbjct: 301 AATQRIAEERADNAGSQVAYAGQDPDDL 328 >gi|283457879|ref|YP_003362479.1| chromosome segregation ATPase [Rothia mucilaginosa DY-18] gi|283133894|dbj|BAI64659.1| chromosome segregation ATPase [Rothia mucilaginosa DY-18] Length = 1120 Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 94/288 (32%), Gaps = 33/288 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + + L + F+++AS F VG NG GK+N+L+A++++ + R S Sbjct: 19 VHLMSLTLRGFKSFASATTFEFTPGINAVVGPNGSGKSNVLDALAWVMGEQGAKSLRGGS 78 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-----------------SVRCL 103 DV GS S G A +++ + D Sbjct: 79 MKDVIFAGSGEAGSGDGAQRAPLGRAKVTLTFDNSDGTLSIPADRVQISRTMFRSGGSEY 138 Query: 104 QINDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 +IN R+ D L + + + +D + + +RR +++ + + Sbjct: 139 EINGSPARLADIQDLLSEAGLGQQMHVLVGQGQLDAVLHATAQQRRDMIEQAAGVVK--Y 196 Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--VEMINALSSLIM 213 RRR R + +T + S ++E AR I L ++++ Sbjct: 197 RRRQEKTSRKLESVASNVTRLSDLVAELDSQLQPLSEQAESAATARQLQARIRQLEAVLL 256 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 +L +G + E A+ + + Sbjct: 257 ARQLGVLQAEQAQALASEAEGTRRAETLKEQLEAARAASAKHQQEQNR 304 >gi|311113795|ref|YP_003985017.1| chromosome partition protein SMC [Rothia dentocariosa ATCC 17931] gi|310945289|gb|ADP41583.1| chromosome partition protein SMC [Rothia dentocariosa ATCC 17931] Length = 1205 Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 103/289 (35%), Gaps = 38/289 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + + L + F+++AS F VG NG GK+NI++A++++ + R S Sbjct: 1 MHLTSLTLRGFKSFASSTTFEFAPGINAVVGPNGSGKSNIMDALAWVMGEQGAKTLRGGS 60 Query: 61 YADVTRIGSP------------SFFSTFARVEGMEGLADI---SIKLETRDDR-SVRCLQ 104 DV GS R++ +G I ++++ R + Sbjct: 61 MQDVIFAGSGTSGAENGGKSQLGRAQVVLRLDNTDGALSIPADTVEISRTMFRAGGSEYE 120 Query: 105 INDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 IN R+ D + + + + +D+I + ERR ++ + +R Sbjct: 121 INGSPARLSDVHDILAEAGMGREMHVLIGQGQLDKILHASAAERREIMEEAAGILK--YR 178 Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216 RR R + + LT + + Q+ LG + L + I E Sbjct: 179 RRQDKTARKLEAMSANLTRLN---DLAAELSNQLEPLGDQ--AESAATARELQARIRELH 233 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 +L + + + ++ A +L + R+ R+TL Sbjct: 234 -GILITRETHALNAQVQEQTRRLSDTSEQ--AHELDESREKIRTRRKTL 279 >gi|306836413|ref|ZP_07469390.1| chromosome segregation protein Smc [Corynebacterium accolens ATCC 49726] gi|304567694|gb|EFM43282.1| chromosome segregation protein Smc [Corynebacterium accolens ATCC 49726] Length = 1176 Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 21/171 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + + R Sbjct: 1 MHLKSLTLKGFKSFASATSLKFEPGICAVVGPNGSGKSNVVDALAWVMGEASAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MQDVIFAGAGDRKQLGRAEVTLTIDNADGALPIEYSEVSVTRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 ++D + + + I + I +RR +++ + R Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLSEILESRPEDRRSYIEEAAGVLKHR 171 >gi|227497499|ref|ZP_03927728.1| SMC structural maintenance of chromosomes partitioning protein [Actinomyces urogenitalis DSM 15434] gi|226833073|gb|EEH65456.1| SMC structural maintenance of chromosomes partitioning protein [Actinomyces urogenitalis DSM 15434] Length = 431 Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 81/210 (38%), Gaps = 26/210 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L I F+++AS L + T VG NG GK+N+++A++++ + R S Sbjct: 1 MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGVKNLRGGS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIR 111 ADV G+ S ++ +G+ I T QIN R Sbjct: 61 MADVIFAGAGSRPALGRAEVSLTIDNSDGVLPIDYTEVTVTRTLFRGGGSEYQINGTPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + ERR F++ + R E Sbjct: 121 LLDVQELLSDTGLGRQMHVIVGQGRLDAVLQATPEERRGFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 R +R + + + + + + Q+ L Sbjct: 176 RALRKLDSMAADLARLTDLTAELRRQLGPL 205 >gi|172039130|ref|YP_001805631.1| hypothetical protein cce_4217 [Cyanothece sp. ATCC 51142] gi|171700584|gb|ACB53565.1| unknown [Cyanothece sp. ATCC 51142] Length = 379 Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 59/383 (15%), Positives = 127/383 (33%), Gaps = 51/383 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RRAS 60 I+ L+I +R + + AQ + VGDN GKT++LEAI L + + + + Sbjct: 2 IRNLSIKNYRCFEDFYVDSLAQVNLIVGDNNSGKTSLLEAIYLL-LDKSYYYKFHNKTTT 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD-ELNKH 119 ++ ++ F S E + + + +IN + D + Sbjct: 61 LINLLKL-RKEFLSLILEDEKKSNIIKVYLIPHL-----FYQYKINKTIEIFCDNDFFSK 114 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + I+ L P + +F + + D + +F + + + +++ Sbjct: 115 VEITNLKPE-----------KSKFKNTHLLITDDECFKVNYEFRKSNTENKNIRGQAFYE 163 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + + + E + R+ I L Y F + ++ +D Sbjct: 164 INQQGTYIQETPENANQ---TRLNGIERLI----MYTPDSIFMPLNYDYLDDVEKNWDLI 216 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 KE+ + D + + + + + I S G+ ++G+ Sbjct: 217 QLTPKEDKVIEALQIINPDIERIGFTVSQYTKQIRLKIRGEDQPIPLSSMGQGMNRILGL 276 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKR----NALFRIVTDIGSQIFMTG------ 349 L +LL+DEI L + + L + ++ QIF T Sbjct: 277 ITTAVIL------ENGVLLIDEIETGLHYESQTDMWRLLIKTAQELNVQIFATTHSWDCI 330 Query: 350 -TDKSVFDSLNET--AKFMRISN 369 + + + + K R+ N Sbjct: 331 CALQEALEDVEDNSVGKLFRLDN 353 >gi|312114249|ref|YP_004011845.1| ATP-dependent endonuclease of the OLD family [Rhodomicrobium vannielii ATCC 17100] gi|311219378|gb|ADP70746.1| putative ATP-dependent endonuclease of the OLD family [Rhodomicrobium vannielii ATCC 17100] Length = 543 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 64/357 (17%), Positives = 120/357 (33%), Gaps = 41/357 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP----GRGFRRA 59 + I+ + I F+ + + FD I VG+N GK+ +LEAI G+ R Sbjct: 1 MYIEKVKIKNFKCFEGWFEVDFDQGVNIIVGNNEAGKSTLLEAIHLCLTGMLNGKYLRNE 60 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNK 118 + + + +I I+L +D ++ L+ N E N Sbjct: 61 LSPYLFNRNIERAYLDSLATKAPLQPPEIQIELFLDGEDDALEELRGNGN-----SEKND 115 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR-MIDFERLMRGRNRLLTEGY 177 R D+ + G + + +I + +F R + + Sbjct: 116 KARGLLFSIEFDKKYDG--AYTELLKGKEINSIPLEFYQVQWSEFSR----QPAMARTIP 169 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 S+ S ++ I+ + ++ ++ L K D Sbjct: 170 IKSALIDS-------TSTRVQSGSDMYISRIVREFLDDKERVAISQAHRKLKDAF--KAD 220 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ---KV 294 + A+ E A+ RK S+S + + + + + + + GEQ K Sbjct: 221 GNVGAINERLAEAAKISRKKVSIS-VDMSSHNAWESSLMTYIEDVPFHYIGKGEQCIVKT 279 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTG 349 LA L S A +LL++E HL K N L ++ + G Q+ +T Sbjct: 280 -----RLA---LSSKKNSEATVLLIEEPENHLSHSKLNQLISDISTDNSGKQVIITT 328 >gi|318076728|ref|ZP_07984060.1| putative chromosome segregation protein [Streptomyces sp. SA3_actF] Length = 470 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 97/279 (34%), Gaps = 29/279 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++AS L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ ++ +G I T QIN R Sbjct: 61 MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTIARTMFRNGGSEYQINGDTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + M RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEASGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFP 222 + +R + + + Q+ LG + +AR + + + + ++ + Sbjct: 176 KALRKLDAMRANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLSDD 233 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + L + + + KE L ++ Sbjct: 234 LVTLRRALDAEVADEAALKERKEAAESALKTALAREARL 272 >gi|294788566|ref|ZP_06753808.1| ATP binding protein [Simonsiella muelleri ATCC 29453] gi|294483443|gb|EFG31128.1| ATP binding protein [Simonsiella muelleri ATCC 29453] Length = 458 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 59/394 (14%), Positives = 137/394 (34%), Gaps = 42/394 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAI-----SFLSPG 53 +++K + + + L + + T+F+G+NG GKT +L+++ + Sbjct: 1 MQVKSITLHNIGQFKELTIPLAPFNDNAPKVTVFIGNNGSGKTTVLKSLVTALNWLSARI 60 Query: 54 RGFRRASYA---DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 R R +V G S + A+ S + + R Q + Sbjct: 61 RSERGRGLDIPEEVIMNGQSSGMVV---LNVNVKNAEQSFTWQISKSKQGRKNQF-STDL 116 Query: 111 RVVDELNKHLRISWLVP--SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L R + + I + +ER LD + + ++ ++ + Sbjct: 117 KAINSLADIYRTNLTENAQADLPILAFYPVER-SVLDIPLKIREKHSFEQINGYDNAL-- 173 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 N + F W + E E+ I E++N L + + +K +L Sbjct: 174 -NMGVDFRRF-FEWFRNEEDAENEIYKDIPKLPPELVNILR---QHNIDRAVVEKVKDNL 228 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + +++ A ++ ++ ++ + + ++V ++ + S Sbjct: 229 HQAENRLKNETKLAYVKQAIQEFTGFEEIHIQRK------PKQKMLVRKNNQEFDVIQLS 282 Query: 289 TGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-- 341 GE+ ++ + LA + N I+++DE HL + L +T Sbjct: 283 QGEKSLMALVGDIARRLAMLNPSLENPLNSQGIVMIDEADLHLHPQWQRQLIARLTKTFP 342 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 Q F+ T + S ++ + N + I Sbjct: 343 NCQ-FVLSTHSPLVISDSKDIVVYSLENGEMQQI 375 >gi|296412128|ref|XP_002835778.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629571|emb|CAZ79935.1| unnamed protein product [Tuber melanosporum] Length = 1148 Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 100/304 (32%), Gaps = 32/304 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62 I + F Y ++ + + +G NG GK+ I+ AI L G R + Sbjct: 105 IVRIKAENFVTYTAVEFLPGPNLNMVIGPNGTGKSTIVCAIC-LGLGSSPANLGRAKEIS 163 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELNKHL 120 + + G + ++G E + IK + + + +N + +L K Sbjct: 164 EFVKHGCDTA-VIEIELQGKENERNPIIKRKIGRENNTSTFTLNGSPSTPGKITKLVKSY 222 Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 I +P + A P + ++L + R LL E Sbjct: 223 NIQIDNLCQFLPQDRVVEFAGLTAIDLLTHTQRAAAPPEILGHHENLKKLGKNRKELLNE 282 Query: 176 GYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSSLIMEYVQKENFPHIKLS 227 D + +S+EA+ A L + I R+E++ + V + K + Sbjct: 283 LEIDRNQLASMEARQAALQQDVERLRERQEIIKRIELLEKAKPFVKYRVARSLAKDAKDA 342 Query: 228 LT------GFLDGKFDQ--SFCALKEEYAKKLFD---GRKMDSMSRRTLIGPHRSDLIVD 276 L+ + + K Y K L RK + ++ + + D+I Sbjct: 343 SKVAERELRELEQQVEPMTEAPKAKRRYQKALERCVVARKKELEAKEAAVTKFKDDVIGK 402 Query: 277 YCDK 280 +K Sbjct: 403 ADEK 406 >gi|326771794|ref|ZP_08231079.1| chromosome segregation protein SMC [Actinomyces viscosus C505] gi|326637927|gb|EGE38828.1| chromosome segregation protein SMC [Actinomyces viscosus C505] Length = 435 Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 26/210 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L I F+++AS L + T VG NG GK+N+++A++++ + R S Sbjct: 22 VHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 81 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 ADV G+ S ++ +G I + + +IN R Sbjct: 82 MADVIFAGAGSRPALGRAEVSLTIDNTDGALPIDYTEVTISRTLFRGGGSEYRINGSPCR 141 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L + + + +D + + +RR F++ + R E Sbjct: 142 LLDVQELLSDTGLGRQMHVIVGQGQLDAVLTATPEDRRGFIEEAAGVLKHR-----KRKE 196 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 R +R + + + + Q+ L Sbjct: 197 RALRKLESMAADLARVADLTQELRRQLGPL 226 >gi|116754465|ref|YP_843583.1| chromosome segregation protein SMC [Methanosaeta thermophila PT] gi|116665916|gb|ABK14943.1| condensin subunit Smc [Methanosaeta thermophila PT] Length = 1171 Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 23/164 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + + F+++ + + G NG GK+NI++A+ F L+ R R Sbjct: 1 MHIKEIELRNFKSFGRRALVQLKKDFIVVTGPNGSGKSNIIDALLFSLCLTSSRAMRAER 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--------- 111 D+ G FA V + ++ +++ + R +++N Sbjct: 61 LPDLIYRGDDGRAPDFAEVTVRLDNSTRTMPVDSDEVVITRRIKVNGERYHAQHYLNGRA 120 Query: 112 -VVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145 EL +HL + + P + RI ERRR +D Sbjct: 121 CTQAELQEHLARAGITPEGYNVVMQGDVTRIIEMGPTERRRIID 164 >gi|237785776|ref|YP_002906481.1| chromosome segregation protein [Corynebacterium kroppenstedtii DSM 44385] gi|237758688|gb|ACR17938.1| chromosome segregation protein [Corynebacterium kroppenstedtii DSM 44385] Length = 1194 Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 103/298 (34%), Gaps = 43/298 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + VG NG GK+N+++A++++ + R S Sbjct: 1 MYLKSLTLKGFKSFASSTTLKLEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKSLRGGS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ + ++ +G I + R R +IN R Sbjct: 61 MDDVIFAGTGARKPLGRAEVTLTIDNSDGALPIDYSEVSITRRVFRDGGGEYEINGARAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR +++ + R E Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSTILESKPEDRRAYIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFD--SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + R + + D + +E Q+ L R ++ + +++ Sbjct: 176 KA--QRKLVSMQANVDRLRDLTTELERQLKPLA------RQAEAAQKAATVQSDLREARL 227 Query: 222 PHIKLSLTGFLDGKFD-----QSFCALKEEYAKKLFDGRK--MDSMSRRTLIGPHRSD 272 SL D + +E +KL + R+ + R +GP + Sbjct: 228 NLAAHSLVTARDDADELTRRANEAREKEEALVEKLEELREHVDELEHRVAELGPRSEE 285 >gi|171915571|ref|ZP_02931041.1| ATPase [Verrucomicrobium spinosum DSM 4136] Length = 435 Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 63/396 (15%), Positives = 124/396 (31%), Gaps = 81/396 (20%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + I FR L L FD + T+ VGDNG GKT+IL A+S + G Sbjct: 1 MRIVSIQIDNFRGIKHLGLEFDPRFTLLVGDNGSGKTSILSALSV-ALGIWHVSK----- 54 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G+ + + M+ ++ RD+ R Q V Sbjct: 55 IVSGAKQWRNI------MDHEVH---EVLGRDENGQRQFQPAGPVQITATGSIGDRSAHA 105 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR---LLTEGYFDSS 181 + R +D+ + + R LL + Sbjct: 106 WT-------RRKRARKSRTVDQWATQTVTDIQAALA----AREQRQEALPLLAYYGAGRA 154 Query: 182 WCSSIEAQMAELGVKI-----------NIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 W S E ++A+L + R+ + + + +++ +++ K + Sbjct: 155 WLPSNERELADLSGDLKSRPEDGYYDCLSERIRVKDVIKWFVLQAAKRDESGQFKPAFEA 214 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + + + E Y L + +++V K + S G Sbjct: 215 -VRLALKRGIPGIDEIYWDHL------------------KGEVVVSIHGKPQPFTNLSHG 255 Query: 291 EQ-----------KVVLVGIFL-------AHARLISNTTGFAPILLLDEISAHLDEDKRN 332 + + V + L AH + + T ++L+DE+ HL + + Sbjct: 256 QMTMAATLADMAIRAVSLNSHLLGNGGGSAHPEQLLDQT--PGVVLIDEVDVHLHPEWQR 313 Query: 333 ALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMR 366 ++ + T Q + VF L + + Sbjct: 314 SVIKDFTGTFPKVQFICSSHSPQVFGELPKDQILVH 349 >gi|237741549|ref|ZP_04572030.1| exonuclease SbcC [Fusobacterium sp. 4_1_13] gi|229429197|gb|EEO39409.1| exonuclease SbcC [Fusobacterium sp. 4_1_13] Length = 921 Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 17/170 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62 + IK + + +R++++ + F + +G NG GKT+ILEAIS + R Sbjct: 1 MIIKKVQLENYRSHSNTTVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-----NDVVIRVVDELN 117 + G S + ++ + + I + + ++EL Sbjct: 61 SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDIIGSEYDGDIQEKLEELC 120 Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157 + + IF +R +R+ I Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNRIFNTQIYKEMYD 170 >gi|148652279|ref|YP_001279372.1| SMC domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571363|gb|ABQ93422.1| condensin subunit Smc [Psychrobacter sp. PRwf-1] Length = 1280 Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 57/334 (17%), Positives = 110/334 (32%), Gaps = 71/334 (21%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L +S F+++A+ F T VG NG GK+N+++AI ++ S + R + Sbjct: 1 MRLKSLKLSGFKSFANPTTFSFRHGITAIVGPNGCGKSNVIDAIRWVLGESSAKQLRGGA 60 Query: 61 YADVTRIGSPS-FFSTFARVE-----------GMEGLADISIKLETR---DDRSVRCLQI 105 +DV G+ + + A VE G+ ++ +L R + I Sbjct: 61 MSDVIFAGTQNKAAKSLASVELTFEHTQDEQTGIRHELNLYHELSVRRQINGEGKSDYFI 120 Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157 N R D L + RI ++ R F++ Sbjct: 121 NGTRCRRRDVVDVFLGTGLGPRSYSVIQQGMIGRIVDSSPLQLREFIEEAAG-------- 172 Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217 + ++ + L + IEA+++ K+ ++ + Q Sbjct: 173 -VSRYQARREETQKKLLRTRENLERLQDIEAELSRQKKKLAKQ-----AESATHYQQLQQ 226 Query: 218 KENFPHIKLSLTGFLDGKFDQS-FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 + + +L K Q A +E+ K L + DSM + Sbjct: 227 QLSEVKEQLGTQQLYQAKAAQMQHKAEQEQLTKSLEAQQAQDSMLK-------------- 272 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 QK+ V LA + + + Sbjct: 273 ---------------QKLAKVSARLAEEQWLKDE 291 >gi|289763098|ref|ZP_06522476.1| chromosome partitioning protein smc [Mycobacterium tuberculosis GM 1503] gi|289710604|gb|EFD74620.1| chromosome partitioning protein smc [Mycobacterium tuberculosis GM 1503] Length = 883 Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + ++ I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 + +R + + + + + Q+ LG Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206 >gi|225022005|ref|ZP_03711197.1| hypothetical protein CORMATOL_02037 [Corynebacterium matruchotii ATCC 33806] gi|224945291|gb|EEG26500.1| hypothetical protein CORMATOL_02037 [Corynebacterium matruchotii ATCC 33806] Length = 837 Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 99/275 (36%), Gaps = 37/275 (13%) Query: 3 NRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRR 58 + +K L + F+++AS L F+ + VG NG GK+N+++A++++ + R Sbjct: 2 TEVYLKSLTLRGFKSFASATTLKFEPGICVVVGPNGSGKSNVVDALAWVMGEQGAKTLRG 61 Query: 59 ASYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVV 109 DV G+ ++ +G DI + R R +IN Sbjct: 62 GKMEDVIFAGAGGRKPLGRAEVTLTIDNSDGALDIDYTEVSVTRRMFRDGASEYEINGSK 121 Query: 110 IRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161 R++D + + + + + +I ERR F++ Sbjct: 122 ARLMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAFIEEAAG------------ 169 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 +++ R R S ++++ + +L ++ + + + + Sbjct: 170 ---VLKHRRRKEKAQRKLVSMQANLDR-LTDLTGELRRQLKPLARQAEAARRAATVQADL 225 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 +L L G+ + + + +E+ A L + Sbjct: 226 REARLRLAGYELTQLQEKLGSAEEQTAMLLAQVEE 260 >gi|296329389|ref|ZP_06871889.1| ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153509|gb|EFG94327.1| ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 923 Score = 69.5 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 17/171 (9%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-- 61 ++ IK + + +R+++++ + F + +G NG GKT+ILEAIS + R Sbjct: 2 KMIIKKVQLENYRSHSNITVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGKETG 61 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQI----NDVVIRVVDEL 116 + G S + ++ + +T+ + I + + ++EL Sbjct: 62 KSYIKFGEKSSKVDINFIANDGREYNLKTEFFKTKPKKQTLKDMIGSEYDGDIQEKLEEL 121 Query: 117 NKHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157 + + IF +R +++ I Sbjct: 122 CGIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 172 >gi|311739746|ref|ZP_07713581.1| chromosome segregation protein Smc [Corynebacterium pseudogenitalium ATCC 33035] gi|311305562|gb|EFQ81630.1| chromosome segregation protein Smc [Corynebacterium pseudogenitalium ATCC 33035] Length = 1173 Score = 69.5 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 21/171 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATSLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MQDVIFAGAGDRKALGRAEVTLTIDNADGALPIEYSEVSVTRRMFRDGASEYEINGSKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 ++D + + + I + I +RR +++ + R Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLSEILESRPEDRRSYIEEAAGVLKHR 171 >gi|255325271|ref|ZP_05366377.1| chromosome segregation protein SMC [Corynebacterium tuberculostearicum SK141] gi|255297836|gb|EET77147.1| chromosome segregation protein SMC [Corynebacterium tuberculostearicum SK141] Length = 1173 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 21/171 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATSLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MQDVIFAGAGDRKALGRAEVTLTIDNADGALPIEYSEVSVTRRMFRDGASEYEINGSKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 ++D + + + I + I +RR +++ + R Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLSEILESRPEDRRSYIEEAAGVLKHR 171 >gi|238750413|ref|ZP_04611914.1| SMC protein-like protein [Yersinia rohdei ATCC 43380] gi|238711344|gb|EEQ03561.1| SMC protein-like protein [Yersinia rohdei ATCC 43380] Length = 673 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 74/415 (17%), Positives = 124/415 (29%), Gaps = 78/415 (18%) Query: 5 IKIKFLNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + I + I FR + S L + T VG+N GKT +++AI + R Sbjct: 1 MYISEIRIENFRLFGSAEKAFVLSLNPGLTALVGENDAGKTAVVDAIRLVLGTR------ 54 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADIS----------------IKLETRDDRSVRCLQ 104 D RI F T E + + + ET + L Sbjct: 55 DQDFLRIDPDDFHQTMPNAERADQVVIRLTFSGLTVVDRGAFSEFLTYETIGEAVETVLI 114 Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFE 163 I V R E R L P + +M FLD + + R + D E Sbjct: 115 ITWVAKRNTKE--GSSRRV-LPPE----WRTGAMGDGPFLDLGARSLLTATYLRPLRDAE 167 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R M S S Q+ + +I + + + + Sbjct: 168 RAM---------SAGRGSRLS----QILQHTKEIRDTGIAFNRHVDPPVDPKMLSVLGLG 214 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD------- 276 S Q+ L EEY L ++ + + + Sbjct: 215 DYASYLFGESEGIKQAHKRLNEEYLAPLSFANDK-LSAQIGVANTQEDNFRLRQLLEKLE 273 Query: 277 --YCDKAITIAHGSTGEQKVVLVG----IFLA-HARLISNTTGFAPILLLDEISAHLDED 329 A +H S G +G +F+A L++ + P+LL++E AHL Sbjct: 274 LTLTGSAEADSHISRG------LGSNNLLFMACELLLLAAESDGFPLLLIEEPEAHLHPQ 327 Query: 330 KRNALFRIVT---------DIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 ++ L + QI +T ++ L+ I +A + Sbjct: 328 RQLRLMSFLQEQAKQERADHQRIQIIVTTHSPNLASDLHLD-NIALIEGGRAFPL 381 >gi|213964604|ref|ZP_03392804.1| chromosome segregation protein SMC [Corynebacterium amycolatum SK46] gi|213952797|gb|EEB64179.1| chromosome segregation protein SMC [Corynebacterium amycolatum SK46] Length = 1164 Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 50/300 (16%), Positives = 99/300 (33%), Gaps = 34/300 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS + F+ VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASATTMKFEPGICAVVGPNGSGKSNVVDALAWVMGEHSAKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I K + R R +IN +R Sbjct: 61 MEDVIFAGTSGRKPLGRAEVTLTIDNSDGALPIQYKEVSVTRRMYRDGASEYEINGSRVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I + +I ERR F++ + R E Sbjct: 121 LMDVQELLSDTGIGREMHIIVGQGRLSQILESRPEERRAFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEYVQKEN 220 + R + D + Q+ L + A R + + A + + Sbjct: 176 KA--QRKLQSMQANLDRLQDLTGELSRQLKPLKRQAEAASRAQTVQADLRDAKLRLAAAD 233 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS---DLIVDY 277 F ++ SL ++ R + + I P DL Sbjct: 234 FVDLQDSLNDIAGQAKLIEEKVETATERAEIAAERTAELEAELEDITPAADAARDLWFRL 293 >gi|300172911|ref|YP_003772076.1| chromosome partition protein [Leuconostoc gasicomitatum LMG 18811] gi|299887289|emb|CBL91257.1| Chromosome partition protein [Leuconostoc gasicomitatum LMG 18811] Length = 1184 Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 104/295 (35%), Gaps = 36/295 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +K+K L IS F+++A + F T VG NG GK+NI+EAI ++ + R Sbjct: 1 MKLKSLEISGFKSFADKTIIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60 Query: 61 YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 +DV G + + V +D +K E + R R L QIN V R Sbjct: 61 MSDVIFGGTNKRHALNRSEVSMTFDNSDRYVKSEFNEIRITRKLYRSGESTYQINGVDSR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162 + ++++ + L I S ERR ++ + +++ Sbjct: 121 -LRDIHELFMDTGLGRESFSIISQGRVEGIFNAKPEERRGIIEEVAGVYK--YKQNKERA 177 Query: 163 ERLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEYVQ 217 ++ + + L Y + Q A+ I R E ++ L + Sbjct: 178 QKELTQTSDNLARVANIIYEIQGRIEPLAEQSAQAIDYIAQKERFETLDTLKLALTHRTL 237 Query: 218 KENFPHIKLSLT------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266 + + + + D +L E+ +++ D + + L Sbjct: 238 ETQIKDVTTQVEVQDGRVNQIKSTLDVLHKSLSEKRQERISMQLMRDKVQQDILH 292 >gi|170017642|ref|YP_001728561.1| Barmotin [Leuconostoc citreum KM20] gi|169804499|gb|ACA83117.1| Barmotin [Leuconostoc citreum KM20] Length = 1184 Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 103/294 (35%), Gaps = 34/294 (11%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +K+K L IS F+++A + F T VG NG GK+NI+EA+ ++ + R Sbjct: 1 MKLKSLEISGFKSFADKTIIEFMPGMTGIVGPNGSGKSNIIEAMRWVMGEQSAKDLRGTK 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 DV G+ A V D + + + R R L QIN V R Sbjct: 61 MTDVIFGGTNMRGALNRAEVSMTFDNTDHYVNSDFSEIRITRKLYRSGDSSYQINGVESR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ RR ++ + ++++ + Sbjct: 121 LRDVHDLFIDTGLGRESFSIISQGRVESIFNAKPENRRAIIEEVAG--VHKYKQNKDRAQ 178 Query: 164 RLMRG-RNRLLTEG---YFDSSWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEY--- 215 + + R+ L + + Q A+ + R E +N L + + Sbjct: 179 KELTQTRDNLARVADIIHEIQGRLDPLAEQSAQATDYLAQKERFEALNRLQLALTHHDLE 238 Query: 216 ---VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266 ++ L K D AL ++ +++ D + + L Sbjct: 239 LKIIEATRRAESNDGLVNQDKTKLDVLNKALADKRQERISAQLLRDKLQQNILH 292 >gi|20094127|ref|NP_613974.1| SMC1-family ATPase [Methanopyrus kandleri AV19] gi|49036452|sp|Q8TXI4|RAD50_METKA RecName: Full=DNA double-strand break repair rad50 ATPase gi|19887131|gb|AAM01904.1| SMC1-family ATPase involved in DNA repair [Methanopyrus kandleri AV19] Length = 876 Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 102/299 (34%), Gaps = 49/299 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + I R+++S + F + VG NG GKT +LEAI+ R FR SY + R Sbjct: 2 IERVKIENLRSHSSTEIEFREGINVLVGPNGAGKTTVLEAITLALFPRTFR--SYDHMIR 59 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------------QINDVVIRV 112 G + + + L + DV V Sbjct: 60 EGERRAVVEVVFWGADGHKYKVRREFYRGGGQRNPRLYREEGDGWKVVASGRAEDVDREV 119 Query: 113 VDELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 ++ L R + + ++ ER+R +DR + + +F++ Sbjct: 120 MNALGGVDRDVFREAVYIRQGEIAKLVEATREERKRIVDRTLG---------LAEFKKAR 170 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARV--------EMINALSSLIMEYVQ 217 + LL + ++ +L G K + RV + L + E + Sbjct: 171 EQAHELLRVAEAK---LETFRERVRDLKGSKKELKRVERELEELKREVKELEPEVEELKE 227 Query: 218 KENFPHIKLSLTGFLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270 + N L+G+ +S +++ K + +G++ + +R P + Sbjct: 228 RLNELREAKREFERLEGELRLLENKIESLKGRRDDLRKLVEEGKEAERELQRLGDVPSK 286 Score = 39.1 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 27/189 (14%) Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLT-------GFLDGKFDQSFCALKEEYAK 249 + R E+ + +KE + L+ D ++ A++ E +K Sbjct: 687 MEKRREELKKQVRKYREAKERKERLERVVEVLSLCKEVFRYSRDVAREKVLPAVEREASK 746 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDY---CDKAITIAHGSTGEQKVVLVGIFLAHARL 306 L D R + ++ I S GE+ ++ + + LA L Sbjct: 747 IL-----QDLSDRYGSLRIEDDGAVIRVSVPGGHFIEADRMSGGEKIIIGLALRLA---L 798 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS------QIFMTGTDKSVFDSLNE 360 + FAP ++LDE + HLD + R L + + ++ Q + D+ + D+ +E Sbjct: 799 AMVGSSFAPFIMLDEPTVHLDAEHRERLAQALRELDLGKGRVRQAIVVTHDEELEDAADE 858 Query: 361 TAKFMRISN 369 RI N Sbjct: 859 ---LWRIEN 864 >gi|330960291|gb|EGH60551.1| ATP binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 441 Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 6/111 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + +R +A + FD Q TI NG GKT++LEAI ++ F + V Sbjct: 1 MNLTRLCLKNYRRFAEFDIEFDPQLTIISARNGQGKTSVLEAI--VAALGPFVGSFDQGV 58 Query: 65 TRIGSPSFFSTFARV-EGMEGLA--DISIKLETRDDRSVRCLQINDVVIRV 112 +R + +ARV EG E + I E + +N R Sbjct: 59 SRH-IERTDARYARVGEGFESEQQFPVVISAEMSNPAMRWQRALNGPKSRT 108 >gi|87300613|ref|ZP_01083455.1| hypothetical protein WH5701_04175 [Synechococcus sp. WH 5701] gi|87284484|gb|EAQ76436.1| hypothetical protein WH5701_04175 [Synechococcus sp. WH 5701] Length = 568 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 69/404 (17%), Positives = 138/404 (34%), Gaps = 75/404 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + I FR L + T+ +G+N GKT+ILEAI R V Sbjct: 1 MQLTKIAIKNFRGIEELEIDLAP-CTVLIGENNTGKTSILEAIYTCLS-----RNLARKV 54 Query: 65 TRIGSPSFFSTFA---------------RVEGMEGLADISIKL---ETRDDRSVRCLQIN 106 G F T A VE EG +I + R+ L+I Sbjct: 55 VPFGDYDFHLTAAMPDPSSSPPIELNFTFVESEEGEWPDAIVQAFDKAYQARADNRLEIR 114 Query: 107 DVVIRVVDELNKHLRISWLVPSM-DRIFSGLSMERRRFLDRMVFAIDPR-HRRRMIDFER 164 V+ D +K + W + D +G + L R + ++P + D Sbjct: 115 FRVVAAYDPASKDFFLDWTFRDLADNELTGAKSPQ---LVRELQQLNPVFFLAAVRDAGH 171 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 +GR++ + + A++ E I A++ +I++ + Sbjct: 172 HFQGRSQFWGSFTKNPQIDDATRAEL-----------EEQIEAINQIILDSHTPFDEVKT 220 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 +++ TG L +++ A+ D +++ + L K Sbjct: 221 QVAKTGRLVPLASTDLVSVEAIPARIF------DMLNKTQV------KLAARGGAKLPIT 268 Query: 285 AHGSTGEQKVVLVGI-------FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 HG+ G Q + ++ + LA A P+L L+E +HL +L+++ Sbjct: 269 QHGA-GTQSLSVLFLFEAFLNSRLAEAY----DPDSEPLLTLEEPESHLHPSAVRSLWQV 323 Query: 338 VTDIGSQIFMTGTDKSVFDSLN-----------ETAKFMRISNH 370 ++ I Q + + ++ + +++ Sbjct: 324 LSGIRGQKIIATHSGELIAAVPLHSIRRLARKAGKVEVFQVNEG 367 >gi|219851419|ref|YP_002465851.1| SMC domain protein [Methanosphaerula palustris E1-9c] gi|219545678|gb|ACL16128.1| SMC domain protein [Methanosphaerula palustris E1-9c] Length = 623 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 68/375 (18%), Positives = 127/375 (33%), Gaps = 65/375 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRG---- 55 + ++ ++IS ++N+ + + F + + VG+NGVGK++I++AI + GR Sbjct: 1 MFLEKISISGYKNFNENFEICFSSGLNVLVGENGVGKSSIIDAIRLILSEDEYGRSGISE 60 Query: 56 ---FR--------RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104 R V S F A + E + + L D ++ R Sbjct: 61 KDFHRPFVKDSVASNKIKIVAHFDELSDFEEIAFLPWREDKNEARLSLVIDDTQNNR--- 117 Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 ++ R W G + + +V I+ + + D E Sbjct: 118 ------------GRYNRKIW----------GGVSQSNPYEKELVELINCIYLPPLRDAEA 155 Query: 165 LMRG-RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 +R R L + + ++A+ +KI N + + E + K N Sbjct: 156 KLREGRGSRLARLILNLNKEEFLKAKRDGKSLKIEEKVNSFYNDIVNDKNEPIFKAN-EL 214 Query: 224 IKLSLTGFLDGKFDQSF-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 IK SL + F Q E ++ + + I + + ++ Sbjct: 215 IKNSLKNAIGTVFGQDTRIQFSETNINRIIENL---RLFFFPEINQNGQEFNYRSLEEN- 270 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP----ILLLDEISAHLDEDKRNALFRIV 338 S G ++ + LA R I P ILL++E AHL + L + + Sbjct: 271 -----SLGYNNLIYLATVLAELRPIKEVESDEPEFLKILLIEEPEAHLHPQLQIKLLKYL 325 Query: 339 TD----IGSQIFMTG 349 QI +T Sbjct: 326 QKETENSNIQIIITT 340 >gi|256844884|ref|ZP_05550342.1| nuclease sbcCD subunit C [Fusobacterium sp. 3_1_36A2] gi|256718443|gb|EEU31998.1| nuclease sbcCD subunit C [Fusobacterium sp. 3_1_36A2] Length = 921 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 17/170 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62 + IK + + +R+++++ + F + +G NG GKT+ILEAIS + R Sbjct: 1 MIIKKVQLENYRSHSNITVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-----NDVVIRVVDELN 117 + G S + ++ + + I + + ++EL Sbjct: 61 SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDIIGSEYDGDIQEKLEELC 120 Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157 + + IF +R +++ I Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 170 >gi|253578968|ref|ZP_04856239.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849911|gb|EES77870.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 243 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 26/224 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A + F T VG NG GK+N+ +A+ L R R + Sbjct: 1 MYLKNIEVQGFKSFAQKINFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSARSLRGGN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ + S ++ + + + + R RS +IN R Sbjct: 61 MQDVIFSGTETRKPLGYASVAITLDNSDHKLPVDFNEVTVTRRLYRSGESEYKINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +DRI SG ERR D + + R+ + Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFDEAAGIVKFKRRKN-TTIK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207 +L R L+ + S + Q+ L + ARV + Sbjct: 180 KLEEERQNLVRV----TDILSELTRQLEPLEKQSETARVYLSKR 219 >gi|237730237|ref|ZP_04560718.1| SMC domain-containing protein [Citrobacter sp. 30_2] gi|226905776|gb|EEH91694.1| SMC domain-containing protein [Citrobacter sp. 30_2] Length = 534 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 65/377 (17%), Positives = 128/377 (33%), Gaps = 55/377 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK + IS +R Y L L +++ + VG N VGK+ ++EAI+ GR + + ++ Sbjct: 2 IKKIKISGYRIYKQLILEPNSKLNLIVGGNEVGKSTLMEAIALALTGRINGKGANDEL-- 59 Query: 67 IGSPSFFSTFARVEGMEGLADI------SIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 +P +F+T + +E IK+E D + I + D Sbjct: 60 --NPYWFNTELVADFVERRQRGENISLPEIKIELFFDNTPELQNICGAINS--DHPTNAC 115 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPR--HRRRMIDF--ERLMRGRNRLLT 174 S ++ I P +R F E+L+ Sbjct: 116 PGVLFH------VLPNSEYNEEIEQWLISPTKILPVEFYRIEWRSFADEKLL-------- 161 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + I+++ I+ ++IN + I ++ +K S+ G + G Sbjct: 162 -NRPRQLTTAIIDSKTVRSSTSIDYHLRQIINDHLAPIERAKISLSYRQVKASMAGGVLG 220 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG---PHRSDLIVDYCDKAITIAHGSTGE 291 ++ L K MD SR + G PH +++ G+ Sbjct: 221 DINERISKLNASLHDKTI-ILDMDQSSRTSWEGVVSPHVNEVPFSMSG---------QGQ 270 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMT 348 Q + + + + ++++E HL + L + + Q+F+T Sbjct: 271 QAAIKISLSMG------RHAEKTKFVMIEEPENHLSHTSLSTLLSRIEKLSSTSQQLFIT 324 Query: 349 GTDKSVFDSLNETAKFM 365 V + L + + Sbjct: 325 THSTFVLNRLGLDSLIL 341 >gi|31794098|ref|NP_856591.1| chromosome partition protein Smc [Mycobacterium bovis AF2122/97] gi|121638803|ref|YP_979027.1| putative chromosome partition protein smc [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991295|ref|YP_002645984.1| putative chromosome partition protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31619693|emb|CAD96633.1| PROBABLE CHROMOSOME PARTITION PROTEIN SMC [Mycobacterium bovis AF2122/97] gi|121494451|emb|CAL72932.1| Probable chromosome partition protein smc [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774410|dbj|BAH27216.1| putative chromosome partition protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 1205 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + ++ I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 + +R + + + + + Q+ LG Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206 >gi|281416945|ref|ZP_06247965.1| SMC domain protein [Clostridium thermocellum JW20] gi|281408347|gb|EFB38605.1| SMC domain protein [Clostridium thermocellum JW20] Length = 696 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 61/399 (15%), Positives = 138/399 (34%), Gaps = 78/399 (19%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGF------ 56 + I + I FRN+ F+ + +G N GK+N+++A++ + S + Sbjct: 4 MYISKIQIKNFRNFKQFEAHFNNGINVIIGHNNSGKSNLIKALALIFDSNTKKHLEIDDF 63 Query: 57 -RRASYADV------------TRIGSPS------FFSTFARVEGMEGLADISIKLE---T 94 + S D+ + + +E + + E Sbjct: 64 NKYISLEDLKNEPPKISIAITITQQEDENLMSDDLVTISNWLTKLEEPYEALLTYEFMLP 123 Query: 95 RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 + ++N++ +E+ + + +L +I+ G + + + D + Sbjct: 124 VKEHERYKKKVNNLE--KEEEIWEVINRDFLRLYTYKIWGGDPINKTVADSESLQKFDFQ 181 Query: 155 HRRRMIDFER-LMRGRNRLLT---------EGYFDSSWCSSIEAQMAELGVKINIARVEM 204 + D ER + GRN LL + D + + +++E+ I R Sbjct: 182 FLNAIRDVERDMFTGRNTLLKSVLDFFIDYDIKSDKE--KTEDEKLSEISE---IKRKFS 236 Query: 205 INA--LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMS 261 I+A L + + ++K LS + FD S+ + +L+ + Sbjct: 237 IDANNLIKSLQKRMEK--GKKEILSYAYNIGASFDNSYPNFDGNISDVQLYSALSLIVEY 294 Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR------LISNTTGFAP 315 + + P + + Y + ++ + + LA + + + P Sbjct: 295 KTGIKIPVSHN-GLGYNN--------------LIFMALLLAKMQINSDGTYLGSNAKVFP 339 Query: 316 ILLLDEISAHLDEDKRNALFRIV-----TDIGSQIFMTG 349 IL+++E AHL + L + + + QIF+T Sbjct: 340 ILVIEEPEAHLHPSMQYQLLKFLNTNIKQNKVRQIFVTT 378 >gi|296117610|ref|ZP_06836194.1| putative RecF/RecN/SMC N domain protein [Corynebacterium ammoniagenes DSM 20306] gi|295969341|gb|EFG82582.1| putative RecF/RecN/SMC N domain protein [Corynebacterium ammoniagenes DSM 20306] Length = 1152 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 21/187 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MQDVIFAGAGDRKALGRAEVTLTIDNRDGALPIDYAEVSVTRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I + I +RR +++ + R R+ + Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLAEILESRPEDRRSYIEEAAGVLKHRRRKDKAQRK 180 Query: 164 RLMRGRN 170 N Sbjct: 181 LTGMQAN 187 >gi|320449560|ref|YP_004201656.1| putative ATP-dependent endonuclease of the OLD family [Thermus scotoductus SA-01] gi|320149729|gb|ADW21107.1| putative ATP-dependent endonuclease of the OLD family [Thermus scotoductus SA-01] Length = 528 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 73/211 (34%), Gaps = 27/211 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-----PGRGFR---- 57 +K L + FR + L T VG NG GKT IL AI + R FR Sbjct: 2 LKRLQVKNFRCLEDIDLPLGP-LTAIVGPNGAGKTTILRAIDLVLGDVWPSLRSFRIPQD 60 Query: 58 -----RASYADV-TRIG----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 ++ SF T R+ AD + LE D+ + Sbjct: 61 FINFDTTRAIEITVHFDPPYTQGSFNITAFRLTCKGEDADFHVDLEPLDEGGNVPRYPSG 120 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 +RV ++ H R+ +L + L R L R++ + + +F+++ Sbjct: 121 NPLRVGTDMRNHARVLFLD-HRRNLAQHLPSIRGSILGRLLQPVRREF-KLQDNFKQVYE 178 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198 LL + IE +AE ++ Sbjct: 179 QAMDLLR-----TEQVKQIEKTIAETAKQML 204 >gi|225849062|ref|YP_002729226.1| DNA double-strand break repair Rad50 ATPase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643582|gb|ACN98632.1| putative DNA double-strand break repair Rad50 ATPase [Sulfurihydrogenibium azorense Az-Fu1] Length = 884 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 104/290 (35%), Gaps = 45/290 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I L + F + + ++ F T +G+NG GKT+ILE I F G+ + D Sbjct: 1 MIITKLTLKNFLAHDNTQVEFSPSGITAIIGENGSGKTSILEGIMFALFGKSSKGNQ-ID 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---------CLQINDVVIRVVD 114 + + G A VE + K+ D+ R ++ V+ Sbjct: 60 LIKWG-----RNKALVELEFIKNGTTYKIVRELDKKGRTVSSTALLYRIESGRQVLERQK 114 Query: 115 ELNKHLRISWLVPSMDRI-------------FSGLSMERRRFLD-----RMVFAIDPRHR 156 L + L + + +R + ++ M + ++ Sbjct: 115 NLKQELPKITGISEKTFLNSILIRQGEIEGFIKQKPADREKTIEEILDLHMYAKLLEKYA 174 Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216 + ++E+ + +L D S+E Q+ + +IN ++N L+ Sbjct: 175 DKRKNYEKQLE----ILKTEKVDK---QSLEDQIKTITDQINQL-ETVLNQLTQEKQSLE 226 Query: 217 QKENFPHIKLSLTGFLDGK---FDQSFCALKEEYAKKLFDGRKMDSMSRR 263 Q+ N K++ L+ + + ++++ + ++++ + ++ Sbjct: 227 QQLNQTEEKINQYSLLENEKRLLETKIDNIEQKIEEINKKIKEIEGLKQQ 276 Score = 42.2 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 8/72 (11%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS---- 343 S G++ + + + LA A+L++ A L+LDE + LD++++ L + ++ Sbjct: 797 SGGQRVALSIALRLAIAKLLNE---KADFLILDEPTIFLDDERKKELVDLFGELKESNFI 853 Query: 344 -QIFMTGTDKSV 354 Q+ +T D+ + Sbjct: 854 KQLIITTHDEEL 865 >gi|330506917|ref|YP_004383345.1| hypothetical protein MCON_0715 [Methanosaeta concilii GP-6] gi|328927725|gb|AEB67527.1| conserved hypothetical protein [Methanosaeta concilii GP-6] Length = 613 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 58/370 (15%), Positives = 120/370 (32%), Gaps = 59/370 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + +++ FRN SL + VG+N VGKTN+L+A+ + G + + ++ Sbjct: 1 MYLSKISVHNFRNLESLEANLSPGLNVIVGENNVGKTNLLDALRV-ALGSAW---NNSEP 56 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + D SI ++ + EL++ + + Sbjct: 57 IHLSKEDLHRS-----SDGNMIDKSIIVDL-----------------IFSELSEEEQAQF 94 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWC 183 L I + + + F + R R+ T D Sbjct: 95 L-----EILNYNPKFPEKSTASIHFEWSWNETNDRGYYRRWGGERSNSETSISEDILQML 149 Query: 184 SS-IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI------KLSLTGFLDGKF 236 S + + + + R + L + K + L F+ Sbjct: 150 SITLLGALRDASSGLAPGRQNRLGRLLRVSANAHDKAQLEEVISKANNDLEQNPFVRSAE 209 Query: 237 DQSFCALK-----EEYAKKLFDGRKM--DSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289 ++ AL+ E + + + D ++ + SDL + K IT S Sbjct: 210 EKISMALEGASGPEFKQEAIIRSSEPEFDRIANNLRLVLKISDLDLA-TGKPITRELRSN 268 Query: 290 --GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS---- 343 G ++ + L+ ++ P+LL++E AHL + L + G+ Sbjct: 269 GLGYNNLIYIATVLSELETVAQA--ALPLLLVEEPEAHLHPQLQILLINFLLKRGAGSSE 326 Query: 344 ----QIFMTG 349 Q+ +T Sbjct: 327 THGVQVIVTA 336 >gi|260206241|ref|ZP_05773732.1| putative chromosome partition protein [Mycobacterium tuberculosis K85] gi|289575627|ref|ZP_06455854.1| chromosome partition protein smc [Mycobacterium tuberculosis K85] gi|289540058|gb|EFD44636.1| chromosome partition protein smc [Mycobacterium tuberculosis K85] Length = 1205 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + ++ I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 + +R + + + + + Q+ LG Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206 >gi|210633203|ref|ZP_03297719.1| hypothetical protein COLSTE_01632 [Collinsella stercoris DSM 13279] gi|210159208|gb|EEA90179.1| hypothetical protein COLSTE_01632 [Collinsella stercoris DSM 13279] Length = 551 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 67/366 (18%), Positives = 124/366 (33%), Gaps = 45/366 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A + F+ T+ VG NG GK+N+ +AI L + R + Sbjct: 1 MYLKSLTLKGFKSFADRAHMTFEPGLTVIVGPNGSGKSNVSDAILWVLGEQSAKQLRGQA 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV GS + ++ + + + + + R RS IN R Sbjct: 61 MEDVIFSGSSARKPVGVAEVTLVLDNSDHMLPVDFNEVAITRRMYRSGESEYLINSSPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L K +D I ERR ++ + E Sbjct: 121 LMDIQDILHDSGLGKDTHSIISQGKLDAILQSRPEERRSLIEEAAGISKHK-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R +R + I Q+ L +++ AR LSS E Q Sbjct: 176 RALRKIKSMDEHLTRARDINREISRQLKPLERQVDRARKY--KDLSSRANELTQILAVDE 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 ++ ++D + A E A+ ++ + L V +K + Sbjct: 234 LRQLQAQWVDLEASSRESAASLELARYRLSEKERELEK-----------LQVMLEEKGLF 282 Query: 284 IAHGSTGEQKVVL--VGIFLAHARLISNTTGFAPILLLDEISAHL--DEDKRNALFRIVT 339 + GEQ+ + V + + G + L E+ L E +R ++ Sbjct: 283 VGDL--GEQRRHMQDVVGRIGSDMRLLEEKGRNMVARLSEMRGTLSGSEHQRRRTVEELS 340 Query: 340 DIGSQI 345 D+ Q+ Sbjct: 341 DVNRQL 346 >gi|254304118|ref|ZP_04971476.1| possible ATP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324310|gb|EDK89560.1| possible ATP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 921 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 17/170 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62 + IK + + +R+++++ + F + +G NG GKT+ILEAIS + R Sbjct: 1 MIIKKVQLENYRSHSNITVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-----NDVVIRVVDELN 117 + G S + ++ + + I + + ++EL Sbjct: 61 SYIKFGEKSSKVEIDFIANDGREYNLKTEFFKTKPKKQTLKDIIGSEYDGDIQEKLEELC 120 Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157 + + IF +R +++ I Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 170 >gi|256005661|ref|ZP_05430618.1| SMC domain protein [Clostridium thermocellum DSM 2360] gi|255990349|gb|EEU00474.1| SMC domain protein [Clostridium thermocellum DSM 2360] gi|316941016|gb|ADU75050.1| SMC domain protein [Clostridium thermocellum DSM 1313] Length = 696 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 61/399 (15%), Positives = 138/399 (34%), Gaps = 78/399 (19%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGF------ 56 + I + I FRN+ F+ + +G N GK+N+++A++ + S + Sbjct: 4 MYISKIQIKNFRNFKQFEAHFNNGINVIIGHNNSGKSNLIKALALIFDSNTKKHLEIDDF 63 Query: 57 -RRASYADV------------TRIGSPS------FFSTFARVEGMEGLADISIKLE---T 94 + S D+ + + +E + + E Sbjct: 64 NKYISLEDLKNEPPKISIAITITQQEDENLMSDDLVTISNWLTKLEEPYEALLTYEFMLP 123 Query: 95 RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 + ++N++ +E+ + + +L +I+ G + + + D + Sbjct: 124 VKEHERYKKKVNNLE--KEEEIWEVINRDFLRLYTYKIWGGDPINKTVADSESLQKFDFQ 181 Query: 155 HRRRMIDFER-LMRGRNRLLT---------EGYFDSSWCSSIEAQMAELGVKINIARVEM 204 + D ER + GRN LL + D + + +++E+ I R Sbjct: 182 FLNAIRDVERDMFTGRNTLLKSVLDFFIDYDIKSDKE--KTEDEKLSEISE---IKRKFS 236 Query: 205 INA--LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMS 261 I+A L + + ++K LS + FD S+ + +L+ + Sbjct: 237 IDANNLIKSLQKRMEK--GKKEILSYAYNIGASFDNSYPNFDGNISDVQLYSALSLIVEY 294 Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR------LISNTTGFAP 315 + + P + + Y + ++ + + LA + + + P Sbjct: 295 KTGIKIPVSHN-GLGYNN--------------LIFMALLLAKMQINSDGTYLGSNAKVFP 339 Query: 316 ILLLDEISAHLDEDKRNALFRIV-----TDIGSQIFMTG 349 IL+++E AHL + L + + + QIF+T Sbjct: 340 ILVIEEPEAHLHPSMQYQLLKFLNTNIKQNKVRQIFVTT 378 >gi|315146257|gb|EFT90273.1| RecF/RecN/SMC protein [Enterococcus faecalis TX4244] Length = 493 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 52/388 (13%), Positives = 129/388 (33%), Gaps = 68/388 (17%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I + ++ FR + + L F FVG+N GKT I +AI + Sbjct: 1 MYISKIKLTNFRCFQGTQTLEFCEGMNFFVGNNNSGKTTIFKAI---------------E 45 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + G + + + +S+++E R D + L N + + L+ Sbjct: 46 FIQSGK----TKENWISKDKSSEHVSVEIEFRGD-DLDSLIQNSSLKKYSSYLS------ 94 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175 ++ S E + D + + +N + Sbjct: 95 ----EDKKLIIMRSSEPGEWTDSKGK-------------TKCLELKNIRIFNPSTKIFEN 137 Query: 176 -GYFDSSWCSSIEAQMAELGVKINIAR----VEMINAL-SSLIMEYVQKENFPHIKLSLT 229 DS+ + +AQ +K + +++ L + + ++ Q E++ ++ + Sbjct: 138 PSGIDSTITALFDAQFVYSDLKNEDYQDFGKTKIVGKLINEVTKDFQQDESWRRLQEAHK 197 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI----VDYCDKAITIA 285 S ++ +++ + + + P + + + + + + Sbjct: 198 NAFGINGLASTLKKIQKQLEEILEDQYGKTKVEFDFGLPGIENFLKTGNILLEENGVKTS 257 Query: 286 HGS--TGEQKVVLVGIF--LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 TG Q+ + + + + + + +DE L ++ L +T+I Sbjct: 258 VSEKGTGMQRALALSLIQLYSQIDRNNKEFSKPILFFIDEPETFLHPQAQDKLLDSLTEI 317 Query: 342 G--SQIFMTGTDKSVFDSLNETAKFMRI 367 SQ+F+T + N+ ++I Sbjct: 318 ANTSQVFITTHSPYLLKKFNKQKHQIKI 345 >gi|294993981|ref|ZP_06799672.1| chromosome partition protein SMC [Mycobacterium tuberculosis 210] Length = 1205 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + ++ I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 + +R + + + + + Q+ LG Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206 >gi|213855770|ref|ZP_03384010.1| recombination protein F [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 64 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 33/64 (51%) Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 + K+++ + LA ++ +G + L+D+ ++ LD+++R L + SQ+F++ Sbjct: 1 QLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAI 60 Query: 351 DKSV 354 Sbjct: 61 SAEH 64 >gi|325104296|ref|YP_004273950.1| SMC domain protein [Pedobacter saltans DSM 12145] gi|324973144|gb|ADY52128.1| SMC domain protein [Pedobacter saltans DSM 12145] Length = 713 Score = 68.8 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 70/400 (17%), Positives = 142/400 (35%), Gaps = 71/400 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA-SYAD 63 + I +++ +RN+A+ F+ +G+NG GKTN+ AI L + A D Sbjct: 1 MYISKVSLVNYRNFANASFQFNKGINTIIGENGSGKTNVFRAIRLLLEDASLQYAYKLTD 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKL-ETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 F + + + ISI+ E D+ +++ L I+ V + D + K Sbjct: 61 ------GDFNRSLDKGKWRGHWIIISIEFDELNDEEAIQSLFIHGVGVAAEDYVKKATYN 114 Query: 123 SWLVPSMD------RIFSGLSMERRRFLDRMVFA---------------IDPR-HRRRMI 160 + P D + G + ++ L+ + DP ++ + Sbjct: 115 LFFRPKADIRQKLSELAEGDAAGLQKILNSITIQDNYETFFTGKSTADFNDPDVYKEIVG 174 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 DFE N + S + S I Q++ + +I+ I AL ++ ++ Sbjct: 175 DFE------NVVFPSTIDASKFGSKIPHQLS-VSKEIS---FTFIQALRDVVSDFHNNRT 224 Query: 221 FPHIKL--SLTGFLDGKFDQSFCALKEEYAKKLFD-----GRKMDSMSRRT--------- 264 P + L + +G + + Q L E+ + + D + D S Sbjct: 225 NPLLTLLKNKSGEIKEEDYQPISDLVEQLNESIEDLPDVQNIRSDIKSTIQDAVGLTYSP 284 Query: 265 ------LIGPHRSD---------LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 P+ ++ + + I S G ++ + + L + + Sbjct: 285 SSLSIKSSVPNEAEKLLQSLKLFIGEPGEEYEGGIHELSLGGANLIFLTLKLLEFKYRKS 344 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349 FA L+++E AH+ + LF + +QI + Sbjct: 345 KDTFANFLIIEEPEAHIHNHIQKTLFDKLDYGDTQIIYST 384 >gi|298676002|ref|YP_003727752.1| SMC domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288990|gb|ADI74956.1| SMC domain protein [Methanohalobium evestigatum Z-7303] Length = 888 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 26/167 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS---- 60 +K+K L + R+Y L L F+ ++ G NG GK+++LEA G R S Sbjct: 1 MKLKRLYVENIRSYEYLDLSFNNGVSVVSGANGSGKSSLLEAFFTGLFGS--RTLSKEYV 58 Query: 61 YADVTRIGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRC---LQINDVVI----- 110 AD+ R G+ S + +E G E + + + +T++DR+ + N ++ Sbjct: 59 LADMIRKGASKA-SIYLELEQNGNEYIIEQGFRYDTKNDRAYNSKSVFKSNGNIVVDQAT 117 Query: 111 RVVDELNKHLRI--------SWL-VPSMDRIFSGLSMERRRFLDRMV 148 + D + K L + ++ +D + + ER+ +D ++ Sbjct: 118 QTYDAVCKLLNMDEEAYRNCVYIRQGEIDILINATPKERQNMIDDLL 164 >gi|148824111|ref|YP_001288865.1| chromosome partitioning protein smc [Mycobacterium tuberculosis F11] gi|253797990|ref|YP_003030991.1| chromosome partition protein smc [Mycobacterium tuberculosis KZN 1435] gi|254551995|ref|ZP_05142442.1| chromosome partition protein smc [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289553289|ref|ZP_06442499.1| chromosome partition protein smc [Mycobacterium tuberculosis KZN 605] gi|297635541|ref|ZP_06953321.1| chromosome partition protein SMC [Mycobacterium tuberculosis KZN 4207] gi|297732540|ref|ZP_06961658.1| chromosome partition protein SMC [Mycobacterium tuberculosis KZN R506] gi|313659872|ref|ZP_07816752.1| chromosome partition protein SMC [Mycobacterium tuberculosis KZN V2475] gi|148722638|gb|ABR07263.1| chromosome partitioning protein smc [Mycobacterium tuberculosis F11] gi|253319493|gb|ACT24096.1| chromosome partition protein smc [Mycobacterium tuberculosis KZN 1435] gi|289437921|gb|EFD20414.1| chromosome partition protein smc [Mycobacterium tuberculosis KZN 605] gi|328457764|gb|AEB03187.1| chromosome partition protein smc [Mycobacterium tuberculosis KZN 4207] Length = 1205 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + ++ I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 + +R + + + + + Q+ LG Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206 >gi|330503409|ref|YP_004380278.1| hypothetical protein MDS_2495 [Pseudomonas mendocina NK-01] gi|328917695|gb|AEB58526.1| hypothetical protein MDS_2495 [Pseudomonas mendocina NK-01] Length = 575 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 66/380 (17%), Positives = 120/380 (31%), Gaps = 66/380 (17%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I+ L IS FR+ +L V +G GK++IL+AI R R ++ D+ Sbjct: 3 RIRRLIISNFRSIQALDWVPAPGINCLIGPGDSGKSSILDAIDLCVGAR--RGGTFGDM- 59 Query: 66 RIGSPSFFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 FF+ + L D+ + L D N V DE L Sbjct: 60 -----DFFALNVETPITISVTLGDLPVSLMDIDVYGEFLRGFNPGTGEVEDEPRAGLETV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM--RGRNRLLT-----EG 176 + G +E +F+ R ER + + R L Sbjct: 115 I----TLLLQVGADLEP----TWTLFSE----RAEQQQLERTLPWKERAALAPARIGSFA 162 Query: 177 YFDSSW-----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 + SW + + + AELG ++ A + + E L+ T Sbjct: 163 SSNLSWSRGSVLNRLTDERAELGAELARAARQARANFGNQAAE----------HLTQTLE 212 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + + Q + L D + + + + I + TG Sbjct: 213 VVQRTAQHLGVSVGAMPQALLDAHSVSIGEGAIAL----------HSETGIPLRSLGTGS 262 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS----QIFM 347 ++++ G+ API L+DE+ L+ + + + Q+FM Sbjct: 263 SRLLVAGLQ-------RAAASAAPIALVDEVEYGLEPHRLMRFLDSLGAKDAAAPLQVFM 315 Query: 348 TGTDKSVFDSLNETAKFMRI 367 T L+ ++ + Sbjct: 316 TTHSPVALRELSG-SQLFVV 334 >gi|18313233|ref|NP_559900.1| hypothetical protein PAE2280 [Pyrobaculum aerophilum str. IM2] gi|18160751|gb|AAL64082.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2] Length = 794 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 105/312 (33%), Gaps = 65/312 (20%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61 +I+ + + FR+Y +V I G G GKT++L A+ + GR R A Sbjct: 3 RIERIEVENFRSYRGRHIVALGDVNILHGRIGAGKTSLLYAVEYALYGRQLEVKERVAKL 62 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR------VVDE 115 D+ S + + + I +L R V + I+ V +R + E Sbjct: 63 QDLINTESQE-MGVVLTLRNGDRVLRIERRLGRRSSEKV-VVNIDGVELRGKDAEEKLAE 120 Query: 116 LNK-----HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------------------ 152 L + R+ ++ F + ++R +F ID Sbjct: 121 LLGADEDVYERLVYISHRTLEGFIYGTSQKRSLTVDRLFGIDVIDGVVRTISGVEKELME 180 Query: 153 --PRHRRRMIDFERL------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198 R+R+ +E+ ++ R L + + E ++A+ ++ Sbjct: 181 KAEELRKRLAAYEKHKDIIRRYGGFGQLKAR---LDSLAGEINALKEREERLAKAAEELA 237 Query: 199 IARVEMINALS---SLIMEYV----------QKENFPHIKLSLTGFLDGKFDQSFCALKE 245 R ++ L L++EY + + LS+ L ++ + Sbjct: 238 KKRANYLSKLQEQEPLLLEYYRVRSELQLLEEAGEGSGVDLSIVERLRDALLEAVEEFEH 297 Query: 246 EYAKKLFDGRKM 257 + ++L + + Sbjct: 298 FFGQELAERLRK 309 >gi|34763238|ref|ZP_00144200.1| EXONUCLEASE SBCC [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887091|gb|EAA24200.1| EXONUCLEASE SBCC [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 921 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 17/170 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62 + IK + + +R++++ + F + +G NG GKT+ILEAIS + R Sbjct: 1 MIIKKVQLENYRSHSNTTIEFTKGINLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQI----NDVVIRVVDELN 117 + G S + ++ + +T+ + I + + ++EL Sbjct: 61 SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMIGSEYDGDIQEKLEELC 120 Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157 + + IF +R +++ I Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 170 >gi|15842466|ref|NP_337503.1| chromosome segregation SMC protein, putative [Mycobacterium tuberculosis CDC1551] gi|57117036|ref|NP_217438.2| chromosome partition protein Smc [Mycobacterium tuberculosis H37Rv] gi|148662766|ref|YP_001284289.1| putative chromosome segregation SMC protein [Mycobacterium tuberculosis H37Ra] gi|215404897|ref|ZP_03417078.1| putative chromosome partition protein smc [Mycobacterium tuberculosis 02_1987] gi|215412764|ref|ZP_03421476.1| putative chromosome partition protein smc [Mycobacterium tuberculosis 94_M4241A] gi|215431869|ref|ZP_03429788.1| putative chromosome partition protein smc [Mycobacterium tuberculosis EAS054] gi|254233012|ref|ZP_04926339.1| chromosome partition protein smc [Mycobacterium tuberculosis C] gi|260187941|ref|ZP_05765415.1| putative chromosome partition protein [Mycobacterium tuberculosis CPHL_A] gi|260202057|ref|ZP_05769548.1| putative chromosome partition protein [Mycobacterium tuberculosis T46] gi|289444477|ref|ZP_06434221.1| chromosome segregation protein SMC [Mycobacterium tuberculosis T46] gi|289448587|ref|ZP_06438331.1| chromosome partition protein smc [Mycobacterium tuberculosis CPHL_A] gi|289746721|ref|ZP_06506099.1| chromosome partition protein smc [Mycobacterium tuberculosis 02_1987] gi|289755035|ref|ZP_06514413.1| chromosome partition protein Smc [Mycobacterium tuberculosis EAS054] gi|298526391|ref|ZP_07013800.1| SMC protein [Mycobacterium tuberculosis 94_M4241A] gi|306777212|ref|ZP_07415549.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu001] gi|306785758|ref|ZP_07424080.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu003] gi|306789798|ref|ZP_07428120.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu004] gi|306794611|ref|ZP_07432913.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu005] gi|306798855|ref|ZP_07437157.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu006] gi|306804700|ref|ZP_07441368.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu008] gi|306808893|ref|ZP_07445561.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu007] gi|306968992|ref|ZP_07481653.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu009] gi|306973329|ref|ZP_07485990.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu010] gi|307081035|ref|ZP_07490205.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu011] gi|17380300|sp|Q10970|SMC_MYCTU RecName: Full=Chromosome partition protein smc gi|13882771|gb|AAK47317.1| chromosome segregation SMC protein, putative [Mycobacterium tuberculosis CDC1551] gi|16030075|emb|CAC93884.1| SMC protein [Mycobacterium tuberculosis H37Rv] gi|41352765|emb|CAA98982.2| PROBABLE CHROMOSOME PARTITION PROTEIN SMC [Mycobacterium tuberculosis H37Rv] gi|124602071|gb|EAY61081.1| chromosome partition protein smc [Mycobacterium tuberculosis C] gi|148506918|gb|ABQ74727.1| putative chromosome segregation SMC protein [Mycobacterium tuberculosis H37Ra] gi|289417396|gb|EFD14636.1| chromosome segregation protein SMC [Mycobacterium tuberculosis T46] gi|289421545|gb|EFD18746.1| chromosome partition protein smc [Mycobacterium tuberculosis CPHL_A] gi|289687249|gb|EFD54737.1| chromosome partition protein smc [Mycobacterium tuberculosis 02_1987] gi|289695622|gb|EFD63051.1| chromosome partition protein Smc [Mycobacterium tuberculosis EAS054] gi|298496185|gb|EFI31479.1| SMC protein [Mycobacterium tuberculosis 94_M4241A] gi|308214421|gb|EFO73820.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu001] gi|308329538|gb|EFP18389.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu003] gi|308333731|gb|EFP22582.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu004] gi|308337088|gb|EFP25939.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu005] gi|308340900|gb|EFP29751.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu006] gi|308344737|gb|EFP33588.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu007] gi|308348717|gb|EFP37568.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu008] gi|308353413|gb|EFP42264.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu009] gi|308357232|gb|EFP46083.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu010] gi|308361241|gb|EFP50092.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu011] gi|323718533|gb|EGB27704.1| chromosome partition protein smc [Mycobacterium tuberculosis CDC1551A] gi|326904536|gb|EGE51469.1| chromosome partition protein smc [Mycobacterium tuberculosis W-148] Length = 1205 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + ++ I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 + +R + + + + + Q+ LG Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206 >gi|392776|gb|AAC43047.1| RecF protein [Caulobacter crescentus CB15] Length = 67 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 4 RIK---IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 R+ + L +++FR+Y RL + G NG GKTN+LEAIS LSPG+ Sbjct: 11 RMASAELLSLTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGK 64 >gi|170289870|ref|YP_001736686.1| SMC domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170173950|gb|ACB07003.1| SMC domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 758 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 8/107 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 + I+ L + F+++ +V G NG GK+NIL+AI+FL R R + Sbjct: 1 MMIEELQLINFKSFKRATIVIPKGLIAITGPNGSGKSNILDAIAFLMGWRAKRLRASRLE 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV 108 + R G+P V E IK++ R + + ++ND Sbjct: 61 HLVRRGAPWAQVNLTIVNSGER-----IKIQRRVKPNGKSSYRVNDK 102 >gi|66358594|ref|XP_626475.1| SMC1 structural maintenance of chromosomes 1 [Cryptosporidium parvum Iowa II] gi|46227810|gb|EAK88730.1| SMC1 structural maintenance of chromosomes 1 [Cryptosporidium parvum Iowa II] Length = 1349 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 91/259 (35%), Gaps = 27/259 (10%) Query: 7 IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 IK L I F++Y + F T VG NG GK+N+++A+SF R + Sbjct: 31 IKKLIIENFKSYNGRHIIGPFSEGLTCIVGPNGSGKSNLMDALSFALGLSSNDMRSTNLK 90 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D+ G ++ + + S L N V V ++ + Sbjct: 91 DLIYRPEQEG--------GPVDISQPNNTVGLSQKGSQSNLSNNAEVSLVFTLQFENNQE 142 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG------ 176 RI S + R +D+ V + + + ++ D+ L++ RN L+ +G Sbjct: 143 IVFS---RRILSSGAS--RYLIDKNVVSQE-TYINKLADYNILVKARNFLVFQGDVEDVA 196 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + + Q++ ++ + N + + V +F KL + + Sbjct: 197 QRAPKELTKLFEQISG-SDELIEEYDRLSNE--QSLNQIVSHNSFNRRKLLEAERRELQK 253 Query: 237 DQSFCALKEEYAKKLFDGR 255 E ++ + R Sbjct: 254 QIEEVNEYERLEEQKANNR 272 >gi|308276701|gb|ADO26600.1| Chromosome partition ATPases protein [Corynebacterium pseudotuberculosis I19] Length = 1160 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 72/187 (38%), Gaps = 21/187 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLRGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + + R R +IN R Sbjct: 61 MEDVIFAGAGERKPLGRAEVTLTIDNSDGALPIEYREVSVTRRMFRDGASEYEINGSRAR 120 Query: 112 VVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + +I +RR F++ + R R+ + Sbjct: 121 LMDIQELLSDSSIGREMHVIVGQGRLAQILESRPEDRRAFIEEAAGVLKHRRRKEKAQRK 180 Query: 164 RLMRGRN 170 + N Sbjct: 181 LVGMQAN 187 >gi|15789741|ref|NP_279565.1| chromosome segregation protein [Halobacterium sp. NRC-1] gi|169235456|ref|YP_001688656.1| chromosome segregation protein [Halobacterium salinarum R1] gi|49036459|sp|Q9HRW3|RAD50_HALSA RecName: Full=DNA double-strand break repair rad50 ATPase gi|10580117|gb|AAG19045.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167726522|emb|CAP13307.1| DNA double-strand break repair ATPase [Halobacterium salinarum R1] Length = 883 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 78/212 (36%), Gaps = 29/212 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ L++S F+ YA + D T+ G NG GK+++L+A F G + AD Sbjct: 1 MRFTRLSLSNFKCYADAAVSLDPGVTVIHGLNGSGKSSLLDACFFALYGTTALDTTLADA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD-------ELN 117 IG+ + E G + ++ R+ + + +D ++ Sbjct: 61 VTIGAETA-EIDLHFEHAGGDYHVHRRIRASGGRAQTAACVLETPTDRIDGVTDVEAHIS 119 Query: 118 KHLRISWLVP---------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 LR+ ++++ + R+ +D ++ ++ ++ R Sbjct: 120 GLLRMDAEAFVNCAYVRQGEVNKLINAAPSTRQDMIDALLQ------LGKLEEY----RQ 169 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 R G D S++E Q+ L +I Sbjct: 170 RAGDARLGVEDVK--SNVEGQLDRLADQIADK 199 >gi|163800493|ref|ZP_02194394.1| hypothetical protein 1103602000595_AND4_07419 [Vibrio sp. AND4] gi|159175936|gb|EDP60730.1| hypothetical protein AND4_07419 [Vibrio sp. AND4] Length = 553 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 59/379 (15%), Positives = 122/379 (32%), Gaps = 68/379 (17%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS----PGRGF 56 M N + I+ L I F+ S F+ + I VGDN GKT ILEA+ +S G+ Sbjct: 1 MGNLMYIEKLTIKNFKKIESGEYEFNEKVNILVGDNDSGKTTILEALELVSSSNYRGKSI 60 Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVVDE 115 + + + + +EG + I +E C + E Sbjct: 61 NSSLSPQL--FNNKA---VRTYLEGDLSKGSLPEILIEAYLSG---CPEYRGKNNSQNKE 112 Query: 116 LNKHLRISWLVPSMDRIFSG------LSMERRRF--LDRMVFAIDPRHRRRMIDFERLMR 167 + + + F ++ F+ +P + + + + Sbjct: 113 YEGVFIKICFDEDLTSTYEEFCKSAKVESIPTEFYKVEWFSFSWEP--IKFLSRKVKGLF 170 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN----ALSSLIMEYVQKENFPH 223 L Y + + S+I + + + +++ L + E Q ++ Sbjct: 171 IDPTRLHPTYGKTQYLSNI------INSSLTKEQQALLHLNYRQLKNSFEEQQQIQD--- 221 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH--RSDLIVDYCDKA 281 L+ D ++ D+ S G ++ ++ K Sbjct: 222 --------LNNDLDSENQVTEQNL------SIIADTNSGTVEAGLQLAVDEVSFNHIGKG 267 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD- 340 + K + + LA + N G + ++E HL + L + +++ Sbjct: 268 E--------QNK---IQVKLA----LLNKGGNVNFVTVEEPENHLSHTNLSRLVKFISEN 312 Query: 341 IGSQIFMTGTDKSVFDSLN 359 +QIF+T V + L+ Sbjct: 313 TNNQIFITTHSSYVLNKLS 331 >gi|300858753|ref|YP_003783736.1| chromosome partition protein [Corynebacterium pseudotuberculosis FRC41] gi|300686207|gb|ADK29129.1| chromosome partition protein [Corynebacterium pseudotuberculosis FRC41] gi|302206459|gb|ADL10801.1| Chromosome partition protein [Corynebacterium pseudotuberculosis C231] gi|302331014|gb|ADL21208.1| Chromosome partition protein [Corynebacterium pseudotuberculosis 1002] Length = 1160 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 72/187 (38%), Gaps = 21/187 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLRGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + + R R +IN R Sbjct: 61 MEDVIFAGAGERKPLGRAEVTLTIDNSDGALPIEYREVSVTRRMFRDGASEYEINGSRAR 120 Query: 112 VVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + +I +RR F++ + R R+ + Sbjct: 121 LMDIQELLSDSSIGREMHVIVGQGRLAQILESRPEDRRAFIEEAAGVLKHRRRKEKAQRK 180 Query: 164 RLMRGRN 170 + N Sbjct: 181 LVGMQAN 187 >gi|303244939|ref|ZP_07331264.1| SMC domain protein [Methanothermococcus okinawensis IH1] gi|302484704|gb|EFL47643.1| SMC domain protein [Methanothermococcus okinawensis IH1] Length = 347 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 43/336 (12%), Positives = 102/336 (30%), Gaps = 72/336 (21%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 + + +++ F+++ + +L + T +G NG GK+NI++ I F+ + + R + Sbjct: 2 VHLSEIHLKNFKSFKNAKLKIPSGFTAILGPNGSGKSNIIDGICFVLGKTSAKSLRAGKF 61 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-------------- 107 ++ + +A V D I +++ R +++ Sbjct: 62 NELITYHKNKR-ADYAEVILFFDNKDRKIPIDSDKIGISRKVKLKGDNNYYMIWYEKKEK 120 Query: 108 --------VVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLDRMVFA 150 ++ L + R+ ERR+ +D + Sbjct: 121 ENEKGIEKRKKMKKSQIIDIFNRISLSGEGLNIILQGDLIRLIEMSPKERRKLIDEICGI 180 Query: 151 IDPRHRRRMIDFE-------------RLMRGRNRL--LTEGYFDSSWCSSIEAQMAELGV 195 + ++ E R+ R L L + D+ + ++ Sbjct: 181 SEYDEKKEKSQRELEKAREYIEKIDIRINEVRANLEKLKKEKNDAEQYLKLNEELKTTKY 240 Query: 196 KINIARVEM--------------INALSSLIMEYVQKENFPHIKL--SLTGFLDGKFDQS 239 + +VE+ + L + N I L L ++ ++ Sbjct: 241 ILTSKKVELLKVVMEDTEKNINALKELKEKFQSNIYNINDEIINLKNKLENIINELNEKG 300 Query: 240 FCALKEEYA--KKLFDGRKMDSMSRRTLIGPHRSDL 273 + E + K+L + D + DL Sbjct: 301 NEEVMELHKSIKELELNIENDKKQ----LNHSLDDL 332 >gi|67609449|ref|XP_666991.1| Xenopus 14s cohesin smc1 subunit [Cryptosporidium hominis TU502] gi|54658074|gb|EAL36760.1| Xenopus 14s cohesin smc1 subunit [Cryptosporidium hominis] Length = 1349 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 93/259 (35%), Gaps = 27/259 (10%) Query: 7 IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 IK L I F++Y + F T VG NG GK+N+++A+SF R + Sbjct: 31 IKKLIIENFKSYNGRHIIGPFSEGLTCIVGPNGSGKSNLMDALSFALGLSSNDMRSTNLK 90 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D+ ++ ++ L + +S L N V V ++ + Sbjct: 91 DLIYRPEQEGGPV------DISQSNNTVGLSQKGSQSN--LSNNAEVSLVFTLQFENNQE 142 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG------ 176 RI S + R +D+ V + + + ++ D+ L++ RN L+ +G Sbjct: 143 IIFS---RRILSSGAS--RYLIDKNVVSQE-TYINKLADYNILVKARNFLVFQGDVEDVA 196 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + + Q++ ++ + N + + V +F KL + + Sbjct: 197 QRAPKELTKLFEQISG-SDELIEEYDRLSNE--QSLNQIVSHNSFNRRKLLEAERRELQK 253 Query: 237 DQSFCALKEEYAKKLFDGR 255 E ++ + R Sbjct: 254 QIEEVNEYERLEEQKANNR 272 >gi|297617463|ref|YP_003702622.1| chromosome segregation protein SMC [Syntrophothermus lipocalidus DSM 12680] gi|297145300|gb|ADI02057.1| chromosome segregation protein SMC [Syntrophothermus lipocalidus DSM 12680] Length = 1193 Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 98/296 (33%), Gaps = 36/296 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++ + F + VG NG GK+NI++AI + S R R Sbjct: 1 MYLKRLELKGFKSFAERTEIEFMPGVNVIVGPNGCGKSNIVDAIRWALGESNVRHLRGQR 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ + + + + + + RS IN V R Sbjct: 61 NDDVIFSGTDKRRPLGLAQVDVAIDNCDRVLPLDFAEVSVTRKVHRSGESEFYINRVPAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +++I + +RR L+ +I + Sbjct: 121 LKDVQDLFAGTGLGKKGYSIIGQGELEQILNLKPFDRRLLLEE---------ASGLIKYR 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 M L D S +E ++ L K + +R L+ + Q Sbjct: 172 HRMEEAETKLAVIKEDMARVEKMLSDLEGRLEVLAEKASKSRRY--RELAGELRNLEQNL 229 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 I+ D ++ + A+ L ++ + + G + +L Sbjct: 230 LASAIERLYRELQDYLGERDKVKAELAKARTLIQEKEQELALLKAKTGEVKENLSF 285 >gi|322387563|ref|ZP_08061172.1| SMC structural maintenance of chromosomes partitioning protein [Streptococcus infantis ATCC 700779] gi|321141430|gb|EFX36926.1| SMC structural maintenance of chromosomes partitioning protein [Streptococcus infantis ATCC 700779] Length = 1179 Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 106/279 (37%), Gaps = 31/279 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A IK+E R+ +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNQDGFIKDAGQEIKVERHIYRTGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKINI--ARVE-MINALSSLIMEYV 216 ++ L Y + +E Q A I + R ++ L + I Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQAATARKFIELDGQRKAIYLDVLVAQIQANK 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255 + + +L+ L + Q L+EE + L R Sbjct: 239 AELDLTEEELNQVQELLTNYYQKRQELEEE-NQSLKKKR 276 >gi|332981632|ref|YP_004463073.1| chromosome segregation protein SMC [Mahella australiensis 50-1 BON] gi|332699310|gb|AEE96251.1| chromosome segregation protein SMC [Mahella australiensis 50-1 BON] Length = 1188 Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 53/298 (17%), Positives = 113/298 (37%), Gaps = 32/298 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K + I F+++A + + T VG NG GK+NI +AI ++ + R + Sbjct: 1 MYLKRIEIYGFKSFADKIDIDLLPGITAIVGPNGSGKSNIADAIRWVLGEQSPKVLRGSR 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNK 118 D+ G+ S A V + +D ++ ++ + + + R + + + L + Sbjct: 61 MEDIIFSGADSRKPVGMAEVSMILDNSDRALDMDYSEIKVTRRMFKSGESEYYLNKTLCR 120 Query: 119 HLRISWLVPS---------------MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 I L +D++ S ERR + + ++ R ID E Sbjct: 121 LKDIQQLFMDTGVGKEGYSIIGQGRIDQLLSDRPQERRGIFEEAAGIVK--YKSRKIDAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + + S +E Q+ L + AR I L ++Y+ F + Sbjct: 179 KKLEQ---TIQNLQRVEDILSELELQLGPLEQESRKAR-HYIQLLDK--LKYIDINLFLY 232 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD--SMSRRTLIGPHRSDLIVDYCD 279 L + + +Q +KE +K + + ++ L+G ++ + + D Sbjct: 233 NYHRLKEQI-ARTEQESADIKETLRQKEQSKQADEAALAQQKALLGVYKDKIEALHAD 289 >gi|205372121|ref|ZP_03224937.1| ATP-dependent OLD family endonuclease [Bacillus coahuilensis m4-4] Length = 479 Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 59/375 (15%), Positives = 112/375 (29%), Gaps = 66/375 (17%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +IK L I FR+Y S + + +G N VGKT +L+AI + RG R S Sbjct: 4 RIKELRIRNFRSYKSADIDLSDNC-VLIGANNVGKTTLLQAIQV-AFVRGTRVGSDDIYI 61 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 G A ++ + D E + D+ +L + + + Sbjct: 62 NNGESLPKDRKAIIDLLIVPTD-EQNNEVMEFEDKWFEHFGDLRSENPTDLGQFFAMRTV 120 Query: 126 VPSMDRIFSG---------------------LSMERRRFLDRMVFAIDPRHRRRMIDFER 164 + I G R R DR++ +I + D Sbjct: 121 IAFD--IVKGEYQVEKKALIEWPKTEEVESYSKYNRNRITDRVLQSIPIFYMDAKRDIAS 178 Query: 165 LMRGR----NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 M+ R +L+ + D IE + E+ I R ++N L+ + + + N Sbjct: 179 EMKDRYSYWGKLVKDVGLDEGEIEKIEGVLDEINDTIIE-RSSVLNHLTKYLSKISKTVN 237 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 + + + D + + + Sbjct: 238 TKEESIKINPV---------------------SRKIRDLNRGIDITFKDQDSESFPISNH 276 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLIS------NTTGFAPILLLDEISAHLDEDKRNAL 334 + + + + L + P++LL+E AHL + + Sbjct: 277 GMGT--------RSWITFLTLVAYIAWKNKQMKDEEIPYHPLILLEEPEAHLHPQAQRKI 328 Query: 335 FRIVTDIGSQIFMTG 349 F + I Q ++ Sbjct: 329 FNQINGIAGQKIVST 343 >gi|66043686|ref|YP_233527.1| hypothetical protein Psyr_0419 [Pseudomonas syringae pv. syringae B728a] gi|63254393|gb|AAY35489.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae B728a] Length = 421 Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-----FLSPGRGFRRA 59 +++ L++ FR Y F + VG NG GKT++L ++ L R + Sbjct: 1 MRLDRLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGVAGCFGNLLGSIGVHRPS 60 Query: 60 SYADVTRIG 68 R Sbjct: 61 IAESDVRFE 69 >gi|289759044|ref|ZP_06518422.1| chromosome partition protein Smc [Mycobacterium tuberculosis T85] gi|289714608|gb|EFD78620.1| chromosome partition protein Smc [Mycobacterium tuberculosis T85] Length = 914 Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + ++ I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 + +R + + + + + Q+ LG Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206 >gi|307706717|ref|ZP_07643522.1| chromosome segregation protein SMC [Streptococcus mitis SK321] gi|307617802|gb|EFN96964.1| chromosome segregation protein SMC [Streptococcus mitis SK321] Length = 1179 Score = 68.0 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 109/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELDSTEEELTQVQELLTSYYQKREKLEEE-NQALKKQRQ 277 >gi|307595308|ref|YP_003901625.1| SMC domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550509|gb|ADN50574.1| SMC domain protein [Vulcanisaeta distributa DSM 14429] Length = 826 Score = 68.0 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 97/277 (35%), Gaps = 29/277 (10%) Query: 1 MTNRIKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--- 56 M +++I L I +FR + R+VF+ I G G GKT+I++AI + G Sbjct: 1 MRVKVRISELTIRDFRGFRGEHRVVFNDGINIIHGPVGSGKTSIVQAIEYALYGTQLEVK 60 Query: 57 -RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 R + AD+ S S G+E + ++ ET + IN + D Sbjct: 61 ERVSKLADLINEDSNSSLVKLVLTNGVEIVRELKRSGETARESP--IAMINGTRYKGDDV 118 Query: 116 LNKHLRISWLVPSMDR------------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K + + + G +R F+D++ + + Sbjct: 119 NPKIIEFLGVDDDDFERFVLVTHRTLEALVYGSITKRSIFIDKLFG------LEILDNLN 172 Query: 164 RLM--RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + + L+ + + + + G I AR + + L I + ++E Sbjct: 173 KSLPMSQLEELINRLRQRLASVKELPEIIVKYGS-IEKAREK-VRELREEIDKLRKEEEE 230 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 + + ++F ++E Y+ + + + Sbjct: 231 LSNTYNDLLKRREEILKNFKGVEEVYSNYIAIRIRRE 267 >gi|325282892|ref|YP_004255433.1| SMC domain-containing protein [Deinococcus proteolyticus MRP] gi|324314701|gb|ADY25816.1| SMC domain protein [Deinococcus proteolyticus MRP] Length = 1101 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 96/263 (36%), Gaps = 31/263 (11%) Query: 7 IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASYA 62 I L + F++++ + F+ T +G NG GK+N++EA+ +++ G R R Sbjct: 2 IDSLTLHGFKSFSQRTHIEFEPGITAVIGPNGSGKSNVVEALRWVTHGARARELRAGRAT 61 Query: 63 DVTRIGSPSFFST---FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 ++ G A V+ A ++ L R R Q V +++ Sbjct: 62 ELIFHGGSGAGRAPLGLAEVQAELRHAGSAVHLSRRIYRDGTSEQELGGRSVRVRDIHAA 121 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 LR + L P + V + +++ + + G +R + Sbjct: 122 LRGTGLGPGGLAVIGQG----------EVSGVVQAEGSKLLGYLQEAAGLSRSVAAREET 171 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 ++ + E +A+LG+ + R + L ++ + + Q+ Sbjct: 172 AALLAEAERHLADLGL-VQAERQSGLERLRRAAEAALR-------------WRELSARQA 217 Query: 240 FCALKEEYAKKLFDGRKMDSMSR 262 +E K+L R++D+ + Sbjct: 218 LLDAAQEREKQLALRRELDAARQ 240 >gi|289423975|ref|ZP_06425767.1| chromosome segregation protein SMC [Peptostreptococcus anaerobius 653-L] gi|289155611|gb|EFD04284.1| chromosome segregation protein SMC [Peptostreptococcus anaerobius 653-L] Length = 1182 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 105/312 (33%), Gaps = 45/312 (14%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++ + FD T VG NG GK+NI +A+ L + R Sbjct: 1 MYLKKLELKGFKSFPMKTDIFFDKGVTAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGEK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV G+ S + ++ G DI + IN R Sbjct: 61 MEDVIFSGTDSKKAMNYCEVAITLDNSNGEIDIDSNELVIKRKAYRTGESNFYINGKSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K ++ I S RR+ D +R + + E Sbjct: 121 LKDIREILMDTGIGKDGYSIIEQGKVEDILSNNPANRRKIFDEACGIAK--YRYKKNEAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL------GVKINIARVE--------MINA-- 207 R ++ + L ++ Q+ L K + R E IN Sbjct: 179 RNLKKSSENLERIN---DIFEEVDKQLKPLERQQVKAKKYIVLRDELKILEINDFINKNK 235 Query: 208 -LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY--AKKLFDGRKMDSMSRRT 264 L I +Y K ++ + G ++ +L +E + L D D++ +T Sbjct: 236 GLEEEISQYTAKIQEISKEMEILGQEKFDLEEDLVSLSKEIDELEILLDKMGEDNIDMKT 295 Query: 265 LIGPHRSDLIVD 276 I +S++ V Sbjct: 296 KISYKKSEIQVS 307 >gi|304380426|ref|ZP_07363105.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304341033|gb|EFM06954.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 729 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 71/418 (16%), Positives = 139/418 (33%), Gaps = 74/418 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 + I L I FRNY S FD + +G+N GKTN L A+ L S + Sbjct: 1 MFISTLQIRNFRNYESEIFRFDNETNTIIGENDSGKTNALTALRILLDDSYYYSSKTLKE 60 Query: 62 ADV---TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 +D + G + A EG I E D+ + +N +++EL Sbjct: 61 SDFFHGIQNGWQGHWIIISATFEG--------ISEEEFDNEICASISLNSESQTILEELI 112 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-----RMIDFERLMRGRNRL 172 + V S+ R++ D + R+ D+E ++ L Sbjct: 113 SNADKG--VGSISLFIRPNKAIRKQLFDISTELDSHQFNEFRNSIRLSDYEFYYTSKSNL 170 Query: 173 ----------LTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLIMEYV 216 L D+ + E A LG +I+++ V ++AL ++ E Sbjct: 171 NFCINENYDKLVGRLNDNIASNPEEDDEALLGSRIDMSDIFKHISVVYVDALRDVLREMK 230 Query: 217 -QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-----------GRKMDSMSRRT 264 + I ++ + +S + ++ + + R+++S+ + Sbjct: 231 NNRNPVKRIMETIESKISSDNVESLKTIIQQLNETITSVPEIRKIGENINRQLNSIIG-S 289 Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQK----------------VVLVGIFLAHARLIS 308 + P+ D S K ++ + + + Sbjct: 290 VYSPNLLLSSTMSDDMGFLAKFLS---MKPEQNIDLDLLGLGHLNMIYLALKIVEFEA-C 345 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRI--VTDIGSQIFMTGTDKSVFDSLNETAKF 364 + I+L++E AH+ + LF + +QI MT T ++E ++ Sbjct: 346 RSRELLNIMLIEEPEAHIHHHIQKTLFEGLNLQKNYTQILMT-THSVHLAEVSEISRM 402 >gi|48477928|ref|YP_023634.1| chromosome partition protein smc [Picrophilus torridus DSM 9790] gi|48430576|gb|AAT43441.1| chromosome partition protein smc [Picrophilus torridus DSM 9790] Length = 1150 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 15/156 (9%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA---S 60 + I+ + I F++Y ++ F T+ +G NG GK+NI +AI F+ R + Sbjct: 1 MFIESIEIDNFKSYGKKTKIYFKPGFTVIIGPNGSGKSNIGDAILFVLGIRSNKTVRIER 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 +D+ S + G IK E + +S + N V Sbjct: 61 LSDLIHKSEKSSRNYCYVELNINDNGNLYSIKREIKKENGEYKSNYYINNNKSKYNDVSN 120 Query: 116 LNKHLRISW------LVPSMDRIFSGLSMERRRFLD 145 L I L ++ I + E+R+ + Sbjct: 121 LIDSFHIYLDSYSFVLQGDINNIITMSGSEKRKLFE 156 >gi|330872072|gb|EGH06221.1| hypothetical protein Pgy4_00810 [Pseudomonas syringae pv. glycinea str. race 4] Length = 438 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +++ L++ FR Y F + VG NG GKT++L + Sbjct: 16 TDMRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 60 >gi|154151724|ref|YP_001405342.1| chromosome segregation protein SMC [Candidatus Methanoregula boonei 6A8] gi|154000276|gb|ABS56699.1| chromosome segregation protein SMC [Methanoregula boonei 6A8] Length = 1146 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 90/279 (32%), Gaps = 37/279 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + I L I F+++ ++ F T+ G NG GK+NI+++I F LS R R Sbjct: 1 MHITELEIDNFKSFSKKTKIPFLEGFTVISGPNGSGKSNIIDSILFVLALSSSRNLRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 D+ + S + A IK R + + ++ HL Sbjct: 61 LTDLINLNSGKNIAEVAIAFSDGTKIRRRIK---RTGNGYYSYNYLNDRLCKQSDIVDHL 117 Query: 121 RISWLVP---------SMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRG- 168 ++P + RI ERR+ +D V D + ++ + + + + Sbjct: 118 SKFGIIPHGYNVVMQGDVTRIMEMSDFERRKIIDEIAGVSEFDTKKQQALSELDVVRERI 177 Query: 169 ------------RNRLLTEGYFDSSWCSSIEAQMA-----ELGVKINIARVEMINALSSL 211 R L + + + ++A +I+ E LSS Sbjct: 178 EREELLLIELTKRAHELKKEREHALEYQKWQKELAFFQGCRSAAQIHDKEKERATLLSS- 236 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + + S+ + E +K Sbjct: 237 AEEQKIRISRLEADRSIEENELAYLKADLADVDELINQK 275 >gi|257466901|ref|ZP_05631212.1| exonuclease SBCC [Fusobacterium gonidiaformans ATCC 25563] gi|315918048|ref|ZP_07914288.1| exonuclease SbcC [Fusobacterium gonidiaformans ATCC 25563] gi|313691923|gb|EFS28758.1| exonuclease SbcC [Fusobacterium gonidiaformans ATCC 25563] Length = 921 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 96/284 (33%), Gaps = 34/284 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63 ++IK + ++ +R+++ + + F + +G NG GKT+ILEAI R Sbjct: 1 MQIKKVVLNNYRSHSHIEVAFSKGINLILGKNGRGKTSILEAIGLALFHMTDRTGKTKGK 60 Query: 64 -VTRIGSP--SFFSTFARVEGMEG---------------LADISIKLETRDDRSVRCLQI 105 + G S F F +G E L D+ + E RD+ + ++ Sbjct: 61 TFMKYGEKESSIFIEFLGNDGREYSIFHHYFLKKPKVSILKDMQTEEEYRDNIEEKLEEL 120 Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFE 163 V D I IF R R +++ + E Sbjct: 121 CGVKAEYRDIY--ENVIVAKQNDFINIFKETPENRARVFNKIFNTEIYNKLFIDLKGFVE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMA---------ELGVKINIARVEMINALSSLIME 214 + ++ + L E + E +M +L AR+E ++ I + Sbjct: 179 QYLKEKEMLEVEENTLRLTLENKEERMEMLQQTEEKWKLYALKKEARLEEKQKIAKKIEQ 238 Query: 215 Y-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 Y K F IK + F + K Q+ L+E + Sbjct: 239 YEFIKREFETIKSKFS-FQEQKIRQNKKELQERLVLAKKAKKAR 281 >gi|330964723|gb|EGH64983.1| hypothetical protein PSYAC_08737 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 117 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +++ L++ FR Y F + VG NG GKT++L + Sbjct: 1 MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 43 >gi|307708795|ref|ZP_07645257.1| chromosome partition protein smc [Streptococcus mitis NCTC 12261] gi|307615161|gb|EFN94372.1| chromosome partition protein smc [Streptococcus mitis NCTC 12261] Length = 1179 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 106/271 (39%), Gaps = 32/271 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L++ I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLAAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + + +L+ L + Q L+EE Sbjct: 238 KAELDLTEEELAQVQELLTSYYQKREKLEEE 268 >gi|257388937|ref|YP_003178710.1| chromosome segregation protein [Halomicrobium mukohataei DSM 12286] gi|257171244|gb|ACV49003.1| SMC domain protein [Halomicrobium mukohataei DSM 12286] Length = 891 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 35/288 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + + F+ Y L D TI G NG GK+++LEA F G + ++ Sbjct: 1 MRISRVRMENFKCYGEADLRLDRGVTIIHGLNGSGKSSLLEACFFALYGTKALDENLDEI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI----------NDVVIRVVD 114 IG+ G G I ++ +R+ + V R V Sbjct: 61 VSIGADDATVELWFSHGG-GDFHIERRVRATGERATTAKCVLETPEGSFDGARAVRRRVT 119 Query: 115 ELNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE-RLMR 167 EL + +++ + R + + +R+ LD ++ ++ ++ R Sbjct: 120 ELLRMDSEAFVNCAYVRQGEVNKLINASPSQRQDMLDDLLQ------LGKLEEYRERASD 173 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAE-----LGVKINIARVEM------INALSSLIMEYV 216 R + +E Q+AE L ++N R ++ I + V Sbjct: 174 ARVGIGRVRDDKQGALGQLEEQIAEKEERDLYDRLNELRSQIAQTSEEIERIEGQRERAV 233 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 + + + + D+ + E R+ D + R Sbjct: 234 ETRDDAQSIIDDHEERQAELDELEAEIDELRETIAETERERDEIDERI 281 >gi|221194733|ref|ZP_03567790.1| chromosome segregation protein SMC [Atopobium rimae ATCC 49626] gi|221185637|gb|EEE18027.1| chromosome segregation protein SMC [Atopobium rimae ATCC 49626] Length = 1182 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 116/303 (38%), Gaps = 41/303 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L + F+++A +VFD T+ VG NG GK+N+ +AI ++ + R + Sbjct: 1 MYLKALTLKGFKSFADKTHMVFDPGLTVVVGPNGSGKSNVSDAILWVLGEQSAKMLRGQA 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS + A V + AD ++ ++ + R + IN R Sbjct: 61 MEDVIFSGSSARGAVGVAEVTLVLDNADHTLPIDFSEIEITRRMYRSGESEYLINGAPSR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD----------------RM 147 ++D L K +D I S +RR ++ R Sbjct: 121 LMDIQDILHDSGLGKDTHSIISQGKLDSILSSRPEQRRELIEEAADISKHRRRKERAERK 180 Query: 148 VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207 + A+D R + + R + L + +S +++ Q++EL V++ V+ + Sbjct: 181 IGAMDENLARAKVVAREIHRQ-LKPLEKQVDKASRAKTLQKQLSELTVQLA---VDDLRQ 236 Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267 L + ++K+N + + L + + + L+ +K + RR Sbjct: 237 LQRNHAKLIEKQNETNAAIELAQYRSDEKAKELEKLQALLEQKGLFVGDLGEQRRRMQDV 296 Query: 268 PHR 270 R Sbjct: 297 LGR 299 >gi|329666209|pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular Clamp In Dna Double-Strand Break Repair gi|329666210|pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular Clamp In Dna Double-Strand Break Repair Length = 365 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 54/387 (13%), Positives = 135/387 (34%), Gaps = 57/387 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ + L + F ++ + F + T+ G NG GK+++ EAISF G G R + D Sbjct: 1 MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDY 60 Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIK---LETRDDRSVRCLQINDVVIRVVD------ 114 + + E +I + L+ + + + + N + Sbjct: 61 VNRNAVDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVK 120 Query: 115 ---------ELNKHLRISWLV-PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 E +R +L +D++ E + + + + + + E+ Sbjct: 121 QEVEKILGIEHRTFIRTVFLPQGEIDKLLISPPSEITEIISDVFQSKETLEKLEKLLKEK 180 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 + + N + S+E ++ E+ + N ++ L + + Sbjct: 181 MKKLENEI--SSGGAGGAGGSLEKKLKEMSDEYNN-----LDLLRKYLFD---------- 223 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR---KMDSMSRRTLIGPHRSDLIVDYCDKA 281 K + + + G+ ++ + Y L +GR D I+ Sbjct: 224 KSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGG---------FIIKDWGIE 274 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 S GE+ ++ + + ++ A + +G +DE + LD + + + ++ ++ Sbjct: 275 RPARGLSGGERALISISLAMSLAEV---ASGRLDAFFIDEGFSSLDTENKEKIASVLKEL 331 Query: 342 ----GSQIFMTGTDKSVFDSLNETAKF 364 +F+T D+ ++ + + Sbjct: 332 ERLNKVIVFITH-DREFSEAFDRKLRI 357 >gi|15923404|ref|NP_370938.1| hypothetical protein SAV0414 [Staphylococcus aureus subsp. aureus Mu50] gi|156978742|ref|YP_001441001.1| hypothetical protein SAHV_0411 [Staphylococcus aureus subsp. aureus Mu3] gi|221141394|ref|ZP_03565887.1| hypothetical protein SauraJ_07108 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|255005211|ref|ZP_05143812.2| hypothetical protein SauraM_02050 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257878680|ref|ZP_05658333.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|282926722|ref|ZP_06334350.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|294615440|ref|ZP_06695312.1| hypothetical protein EfmE1636_1537 [Enterococcus faecium E1636] gi|14246182|dbj|BAB56576.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|156720877|dbj|BAF77294.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257812908|gb|EEV41666.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|269939992|emb|CBI48367.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282592149|gb|EFB97171.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|291591722|gb|EFF23359.1| hypothetical protein EfmE1636_1537 [Enterococcus faecium E1636] gi|302750304|gb|ADL64481.1| recombinational DNA repair ATPase, RecF_1 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315036418|gb|EFT48350.1| conserved hypothetical protein [Enterococcus faecalis TX0027] gi|323465473|gb|ADX77626.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] gi|329313131|gb|AEB87544.1| Recombinational DNA repair ATPase, RecF_1 [Staphylococcus aureus subsp. aureus T0131] Length = 729 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 71/418 (16%), Positives = 139/418 (33%), Gaps = 74/418 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 + I L I FRNY S FD + +G+N GKTN L A+ L S + Sbjct: 1 MFISTLQIRNFRNYESEIFRFDNETNTIIGENDSGKTNALTALRILLDDSYYYSSKTLKE 60 Query: 62 ADV---TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 +D + G + A EG I E D+ + +N +++EL Sbjct: 61 SDFFHGIQNGWQGHWIIISATFEG--------ISEEEFDNEICASISLNSESQTILEELI 112 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-----RMIDFERLMRGRNRL 172 + V S+ R++ D + R+ D+E ++ L Sbjct: 113 SNADKG--VGSISLFIRPNKAIRKQLFDISTELDSHQFNEFRNSIRLSDYEFYYTSKSNL 170 Query: 173 ----------LTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLIMEYV 216 L D+ + E A LG +I+++ V ++AL ++ E Sbjct: 171 NFCINENYDKLVGRLNDNIASNPEEDDEALLGSRIDMSDIFKHISVVYVDALRDVLREMK 230 Query: 217 -QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-----------GRKMDSMSRRT 264 + I ++ + +S + ++ + + R+++S+ + Sbjct: 231 NNRNPVKRIMETIESKISSDNVESLKTIIQQLNETITSVPEIRKIGENINRQLNSIIG-S 289 Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQK----------------VVLVGIFLAHARLIS 308 + P+ D S K ++ + + + Sbjct: 290 VYSPNLLLSSTMSDDMGSLAKFLS---MKPEQNIDLDLLGLGHLNMIYLALKIVEFEA-C 345 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRI--VTDIGSQIFMTGTDKSVFDSLNETAKF 364 + I+L++E AH+ + LF + +QI MT T ++E ++ Sbjct: 346 RSRELLNIMLIEEPEAHIHHHIQKTLFEGLNLQKNYTQILMT-THSVHLAEVSEISRM 402 >gi|237745024|ref|ZP_04575505.1| exonuclease SBCC [Fusobacterium sp. 7_1] gi|229432253|gb|EEO42465.1| exonuclease SBCC [Fusobacterium sp. 7_1] Length = 921 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 17/170 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62 + IK + + +R+++++ + F + +G NG GKT+ILEAIS + R Sbjct: 1 MIIKKVQLENYRSHSNITVEFTKGINLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVIRVVDELN 117 + G S + ++ + + + + + ++EL Sbjct: 61 SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMTGSEYDGDIQEKLEELC 120 Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157 + + IF +R +++ I Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 170 >gi|261206946|ref|ZP_05921635.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566767|ref|ZP_06447180.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|260078574|gb|EEW66276.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161444|gb|EFD09331.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|302179968|gb|ADK98536.1| hypothetical protein [Enterococcus faecium] Length = 729 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 71/418 (16%), Positives = 139/418 (33%), Gaps = 74/418 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 + I L I FRNY S FD + +G+N GKTN L A+ L S + Sbjct: 1 MFISTLQIRNFRNYESEIFRFDNETNTIIGENDSGKTNALTALRILLDDSYYYSSKTLKE 60 Query: 62 ADV---TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 +D + G + A EG I E D+ + +N +++EL Sbjct: 61 SDFFHGIQNGWQGHWIIISATFEG--------ISEEEFDNEICASISLNSESQTILEELI 112 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-----RMIDFERLMRGRNRL 172 + V S+ R++ D + R+ D+E ++ L Sbjct: 113 SNADKG--VGSISLFIRPNKAIRKQLFDISTELDSHQFNEFRNSIRLSDYEFYYTSKSNL 170 Query: 173 ----------LTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLIMEYV 216 L D+ + E A LG +I+++ V ++AL ++ E Sbjct: 171 NFCINENYDKLVGRLNDNIASNPEEDDEALLGSRIDMSDIFKHISVVYVDALRDVLREMK 230 Query: 217 -QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-----------GRKMDSMSRRT 264 + I ++ + +S + ++ + + R+++S+ + Sbjct: 231 NNRNPVKRIMETIESKISSDNVESLKTIIQQLNETITSVPEIRKIGENINRQLNSIIG-S 289 Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQK----------------VVLVGIFLAHARLIS 308 + P+ D S K ++ + + + Sbjct: 290 VYSPNLLLSSTMSDDMGSLAKFLS---MKPEQNIDLDLLGLGHLNMIYLALKIVEFEA-C 345 Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRI--VTDIGSQIFMTGTDKSVFDSLNETAKF 364 + I+L++E AH+ + LF + +QI MT T ++E ++ Sbjct: 346 RSRELLNIMLIEEPEAHIHHHIQKTLFEGLNLQKNYTQILMT-THSVHLAEVSEISRM 402 >gi|328955641|ref|YP_004372974.1| condensin subunit Smc [Coriobacterium glomerans PW2] gi|328455965|gb|AEB07159.1| condensin subunit Smc [Coriobacterium glomerans PW2] Length = 1179 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 56/280 (20%), Positives = 99/280 (35%), Gaps = 32/280 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A +VF+ + VG NG GK+NI +AI L R R + Sbjct: 1 MYLKSLTLKGFKSFADRAHMVFEPGLAVIVGPNGSGKSNISDAILWVLGEQSARQLRGQA 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS + A V + AD + +E + R + IN R Sbjct: 61 MEDVIFSGSSARQQVGVAEVTLVLDNADHVLPVEFEEVAITRRMYRSGESEYLINSSPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D L K +D I ERR ++ + RR Sbjct: 121 LMDIQDVLHDSGLGKDTHSIISQGKLDAILQSRPEERRALIEEAAGIAKHKRRRERS--- 177 Query: 164 RLMRGRNRLLTEGYFDSSWC--SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 R + + + I Q+ L ++++AR L++ E Q Sbjct: 178 ----QRKIASMDEHLKRAHDIRREIARQLKPLERQVDLARTY--EELTARARELTQILAV 231 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ + + + + A + E A+ R+ D Sbjct: 232 DELRRLQSSWSELETRSKESAAELELARYRLSERERDLEK 271 >gi|269926523|ref|YP_003323146.1| chromosome segregation protein SMC [Thermobaculum terrenum ATCC BAA-798] gi|269790183|gb|ACZ42324.1| chromosome segregation protein SMC [Thermobaculum terrenum ATCC BAA-798] Length = 1181 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 94/274 (34%), Gaps = 35/274 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +KI L I F+++++ L FD T VG NG GK+NILEAI ++ + R Sbjct: 1 MKINSLKIQGFKSFSNHTLLEFDHGITAIVGPNGSGKSNILEAIRWVLGEQSYSLLRSKK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKL--------ETRDDRSVRCLQINDVVIR 111 DV GSP A VE D SI L IN R Sbjct: 61 SEDVIWAGSPGKPRAGMAEVEISIDNHDKSIPLPYEEISITRRAYRSGENEYLINGRKAR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM----IDFERLMR 167 L I ++ + S++ V I P HR + D + Sbjct: 121 ----LRDVQEIGAIIGESFTFINQGSVD-------EVLLISPEHRTVLLEQAADITHHFK 169 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 R+ L + +E + + +N +R + + + + ++ ++ Sbjct: 170 RRDETLKR-------LAEVEDNLRRVEDLLNDSRPRLKSLIKQVNNLRSKEVEEEKLRQL 222 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 L + + ++ +K+ + D + Sbjct: 223 LEAYYSRQIQDLESQIESARHRKVHLQNRRDQIL 256 >gi|258652111|ref|YP_003201267.1| chromosome segregation protein SMC [Nakamurella multipartita DSM 44233] gi|258555336|gb|ACV78278.1| chromosome segregation protein SMC [Nakamurella multipartita DSM 44233] Length = 1214 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 98/283 (34%), Gaps = 36/283 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS L + T VG NG GK+N+++AI+++ + R Sbjct: 1 MHLKSLTMKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGTADRPPLGRAEVTLTIDNSDGALPIDYAEVSITRRMFRDGVGEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + +D + +RR F++ + R E Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDAVLQARPEDRRAFVEEAAGVLKHR-----KRRE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA----------RVEMINALSSLIM 213 + +R + + + + I Q+ LG + +A R + L+ + Sbjct: 176 KTIRKLDAMQANLNRLTDLTAEIRRQLGPLGRQAAVARRAAGVQADLRDARMRLLADELT 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + + K + + + E + + R+ Sbjct: 236 QILTKIEQDAVDEQTAVEHRNRVQRDLAEATERLSTAEAELRE 278 >gi|291559422|emb|CBL38222.1| RecF/RecN/SMC N terminal domain [butyrate-producing bacterium SSC/2] Length = 489 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 65/379 (17%), Positives = 127/379 (33%), Gaps = 69/379 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + I F+ Y ++FD I VGDN GK+ ILEAI+ G + Sbjct: 1 MFIDKVKIHNFKCYRDFEIIFDEGLNIVVGDNEAGKSTILEAINLALTG----------I 50 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G +IS + +D + ++ V I L + Sbjct: 51 IR--------------GKSIWNEISQYIFNKDAVEEYIISLSTVPIA----LPYISIEIY 92 Query: 125 LVPSMDRIFSG-LSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRN-RLLTEGYFDS 180 + + + +G + +R + F A + ++ ++E L+ N + L Y+D Sbjct: 93 FGGNENPLMNGDGNSDRNSSAEGFCFKIAFNEKYAD---EYEALLSQGNIKSLPIEYYDI 149 Query: 181 SWC----SSIEAQMAELGVKIN---IARVE-----MINALSSLIMEY--VQKENFPHIKL 226 W I + + R + ++ + +E + H K+ Sbjct: 150 IWTTFARDVITTRSIPYKSCLIDSSEYRYQSGSDVYLSRIIKGTLEIEDITSIAQAHRKM 209 Query: 227 SLTGFLDGKFDQSFCALKEE-YAKKLFDGRKMDSMSRR---TLIGPHRSDLIVDYCDKAI 282 + D + + ++ ++ +++ + ++ Y K Sbjct: 210 RDSFINDPSIEAINTKINQDTSLTDKKIALSVELVTKNAWENSLVTQLDEIPFYYVGK-- 267 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-- 340 GEQ I L T+ A I+LL+E HL + N L + ++ Sbjct: 268 -------GEQ----CVIK-TELALAKRTSKNASIILLEEPENHLSHTRLNQLIKCISKQY 315 Query: 341 IGSQIFMTGTDKSVFDSLN 359 QI ++ V + L Sbjct: 316 AEKQILISTHSSFVVNKLG 334 >gi|237808367|ref|YP_002892807.1| RecF/RecN/SMC N domain-containing protein [Tolumonas auensis DSM 9187] gi|237500628|gb|ACQ93221.1| RecF/RecN/SMC N domain protein [Tolumonas auensis DSM 9187] Length = 650 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 65/387 (16%), Positives = 120/387 (31%), Gaps = 53/387 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP----GRGFRRA 59 + + L I FR + + + VG+NG GKT I+ AI L GR + Sbjct: 1 MYLSNLKIQGFRCFDKDFNVQLTNGLNVIVGENGAGKTAIISAIRQLFHDSESGRYSITS 60 Query: 60 SY--ADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDR------SVRCLQINDVVI 110 + G + + FS A +G++ + +++ +I Sbjct: 61 DDFYSPFIAGGLAATSFSIGAEFDGLDVMDKVALLPWVGASNTALLNIQAENREIRGQFK 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 RV+ + S P + + + + R + + R +L++ N Sbjct: 121 RVI--WGGKSKSSQFDPELLDLIQCIYLPPLRDAESKLSN------GRQSRLSKLLKALN 172 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 R + +E + E + I + LI E + K H + Sbjct: 173 RKKLKQCRIKGELHPLEESVKEFNESLAADDKLSIKDANKLITENLTKAIGHHFGQQTSI 232 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + F + E F DL V+ ++ S G Sbjct: 233 QFA---ESDFTKIAESLTLMFFP------------------DLSVEGVVSFRELSQNSLG 271 Query: 291 EQKVVLVGIFLAHARLISNTTGFAP----ILLLDEISAHLDEDKRNALFRIVTD-----I 341 ++ + LA L +LL++E AHL + L + Sbjct: 272 YNNLLYIASILAELTLDDEDEYEDQPLFKLLLIEEPEAHLHPQLQIRLLNHLKKVAEENK 331 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRIS 368 Q+ +T T +V S E + +S Sbjct: 332 NVQVVVT-THSTVLASSVEIEAIIHLS 357 >gi|116618658|ref|YP_819029.1| condensin subunit Smc [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097505|gb|ABJ62656.1| condensin subunit Smc [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1185 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 115/320 (35%), Gaps = 42/320 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +K+K L IS F+++A + T +G NG GK+NI+EAI ++ + R Sbjct: 1 MKLKSLEISGFKSFADKTMIELMPGMTGIIGPNGSGKSNIIEAIQWVMGEQSAKDLRGTK 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 +DV G+ A V +D ++ + + R R L IN V R Sbjct: 61 MSDVIFGGTDKRGALNRAEVSITFDNSDHYVQSDFNEIRITRKLYRSGESSYLINGVESR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ +RR ++ + +++ + Sbjct: 121 LRDIHELFMDTGLGRESFSIISQGRVESIFNAKPEDRRGIIEEVAGVYK--YKQNKEKAQ 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK-------------INIARVEM-INALS 209 + + + L+ S +AE + ++ AR+ I+ L+ Sbjct: 179 KELTQTSDNLSRVADIIHEIESRIDPLAEQAAEATDYLAQKERFDTLDKARLAWSIHDLN 238 Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 I ++ +++ T D L ++ +++ DS+ L Sbjct: 239 GQISSTTKQVETHDKRVNQTKL---ALDVVNKKLLDKRQERVSAQLSRDSLQATILECTQ 295 Query: 270 RSDLIVDYCDKAITIAHGST 289 + + ++ K + ST Sbjct: 296 KRERLI--GAKNLGAQQIST 313 >gi|241763005|ref|ZP_04761067.1| SMC domain protein [Acidovorax delafieldii 2AN] gi|241367957|gb|EER62176.1| SMC domain protein [Acidovorax delafieldii 2AN] Length = 674 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 58/394 (14%), Positives = 123/394 (31%), Gaps = 70/394 (17%) Query: 5 IKIKFLNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FR 57 + + L I FR + + + F T VG+N GKT +++AI R R Sbjct: 1 MFLSQLTIKNFRQFGAADPLFSIEFREGVTALVGENDAGKTAVIDAIRHALTTRDMEFMR 60 Query: 58 RASYADVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 R + AR+ G+ + + + L + R + E Sbjct: 61 VQPEDFHIRTDGQQATEITIRARLSGLTDGEKGAFAEYLTYEGAEVALYV-HWFARRLSE 119 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER----------- 164 R + SG + E F + + + R + D ER Sbjct: 120 TPGSRRWV-----DITVRSGPAGEGPPFDATVRQLLATAYLRPLRDAEREMSPGRGSRLS 174 Query: 165 -LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK-INIARVEMINALSSL--IMEYVQKEN 220 ++ + FD + + AQ A L + ++ +++ + + + + Sbjct: 175 QILNNFPEIKKGQPFDPTSPPADAAQAANLSLSGLSDYLRHLVDQHEGIGGAQKAINTDY 234 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR-----RTLIGPHRSDLIV 275 H+ L+ L G+ + +++ + ++D ++ R G ++L+ Sbjct: 235 LAHLSLAGEA-LHGRISFAEGGTDTARLRQILERLELDLLAGPDGRSRGTYGLGSNNLLF 293 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 C L+ P+LL++E AHL ++ L Sbjct: 294 MAC------------------------ELLLLGKEPDGLPLLLIEEPEAHLHPQRQLRLM 329 Query: 336 RIVTDI----------GSQIFMTGTDKSVFDSLN 359 + Q+ +T ++ + Sbjct: 330 EFLEAAAEPLAEGTRRQVQVIVTSHSPNLTSKIP 363 >gi|19703857|ref|NP_603419.1| exonuclease SBCC [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714015|gb|AAL94718.1| Exonuclease SBCC [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 921 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 17/170 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62 + IK + + +R++++ + F + +G NG GKT+ILEAIS + R Sbjct: 1 MIIKKVQLENYRSHSNTTVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRTGKETGK 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVIRVVDELN 117 + G S + ++ + + + + + ++EL Sbjct: 61 SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMTGSEYDGDIQEKLEELC 120 Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157 + + IF R +++ I Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKNREEIFNKIFNTQIYKEMYD 170 >gi|289168051|ref|YP_003446320.1| chromosome condensation and segregation SMC protein [Streptococcus mitis B6] gi|288907618|emb|CBJ22455.1| chromosome condensation and segregation SMC protein [Streptococcus mitis B6] Length = 1179 Score = 67.2 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 62/289 (21%), Positives = 113/289 (39%), Gaps = 34/289 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGR----NRLLTEGYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ NRL Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLNRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 + + +L+ L + Q L+EE + ++ D + T Sbjct: 238 KAELDSTEEELAQVQELLTSYYQKREKLEEE--NQNLKKQRQDLQAEMT 284 >gi|172057913|ref|YP_001814373.1| chromosome segregation protein SMC [Exiguobacterium sibiricum 255-15] gi|171990434|gb|ACB61356.1| chromosome segregation protein SMC [Exiguobacterium sibiricum 255-15] Length = 1189 Score = 67.2 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 110/299 (36%), Gaps = 53/299 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++AS L F T VG NG GK+NI +A+ ++ + R A Sbjct: 1 MYLKRIEINGFKSFASRTELDFLPGVTAVVGPNGSGKSNISDAVRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 DV GS FA V + ++ L ++ R + +N R Sbjct: 61 MEDVIFAGSISEHRKQFAEVTLVLDNESGTVALPYQEINVTRRVTRNGDSDYFLNKKPCR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L+ + + +++ SG ERR ++ ++ + Sbjct: 121 LKDVLDLFMDTGLSRDAFAIIGQGRVEQVISGKPEERRSVIEE---------AAGVLKYR 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI---------------NIARVEMINA- 207 + R LT+ + S ++ + ELG +I R + + Sbjct: 172 NRKKQAERKLTDTETN---LSRVDDILYELGGRIEPLREQASLAKEFLVARERYDFLERG 228 Query: 208 -LSSLIMEYVQKE---NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 +++ I +Y+ + + + + Q A +E L + R++++ + Sbjct: 229 IIATEIEQYMTQLTDVSTEIESCQAQLLAEQERLQETIATRETQETSLEEKRRLETEMQ 287 >gi|227833423|ref|YP_002835130.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC 700975] gi|227454439|gb|ACP33192.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC 700975] Length = 1167 Score = 67.2 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 21/171 (12%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATNLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MQDVIFAGAGDRKALGRAEVTLTIDNSDGALPIDYSEVSVTRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 ++D + + + I + I +RR +++ + R Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLAEILESRPEDRRAYIEEAAGVLKHR 171 >gi|78188238|ref|YP_378576.1| ATPase [Chlorobium chlorochromatii CaD3] gi|78170437|gb|ABB27533.1| ATPase [Chlorobium chlorochromatii CaD3] Length = 403 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 65/396 (16%), Positives = 126/396 (31%), Gaps = 90/396 (22%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE--------AISFLSP--GR 54 +++K + + FR + F + T+ +G NG GKT IL+ A+++L GR Sbjct: 1 MRLKSMRLENFRAVEHAVIEFGNRLTLLIGANGSGKTTILDGIAIALGAALTYLPTLSGR 60 Query: 55 GFRRASYADVTRIGSPSFFSTFA----------RVEGMEGLADISIKLETRDDRSVRCLQ 104 F++ R S + ++ A R++ + S + D Sbjct: 61 SFKKGDLHQ--RHNSIAPYTRIALETTTGLKWDRIQRRDKSKSTSKLVPAADGIRALEQF 118 Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM--------VFAIDPRHR 156 ++ ++ +++ + +L ++ + R + R+ F + D R R Sbjct: 119 LDATILEPMNQGSDYLLPLFIYYGVSRALLDVPASRKGFTKKQHRFDALVHCLHADSRFR 178 Query: 157 RR-MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215 M + + + NRL E ++ I A+ I E Sbjct: 179 SAFMWFYNKELEE-NRLQKEKKSFEVTLRELDVV------------RSAITAMFPDISEP 225 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 N + G L L + Y L G +D SR + PH D Sbjct: 226 HIALNPLRFVVRQQGEL-----MDIAQLSDGYKTLL--GVVIDLSSRLAMANPHLDDP-- 276 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 LA I+++DE+ HL + + Sbjct: 277 -------------------------LA----------AEAIVMIDEVDLHLHPSWQQHVV 301 Query: 336 RIVTD--IGSQIFMTGTDKSVFDSLNETAKFMRISN 369 + +Q +T + +++N K +I Sbjct: 302 GDLLRTFKNTQFIITTHSPFIVEAINNHIKRQQIEG 337 >gi|154483580|ref|ZP_02026028.1| hypothetical protein EUBVEN_01284 [Eubacterium ventriosum ATCC 27560] gi|149735490|gb|EDM51376.1| hypothetical protein EUBVEN_01284 [Eubacterium ventriosum ATCC 27560] Length = 1186 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 36/276 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60 + +K + I F+++A+ + F T VG NG GK+N+ +A+ ++ + R + Sbjct: 1 MYLKNIEIHGFKSFANKINFQFHNGITGIVGPNGSGKSNVADAVRWVLGEQKTKQLRSSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ + + + + +I + + R RS IN +R Sbjct: 61 MEDVIFAGTENRKPMGYAYVAITFDNADHKLNIDYDEVTVSRRLFRSGESEYMINGTQVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +DRI SG ERR D + +RR D Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFDEAAGIVK--FKRRKNDAM 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA----------RVEMINALSSLIM 213 + + +N+ L S +E Q+ L + A RV +N I Sbjct: 179 KKLDDQNQNLVRV---SDILGELERQVVPLEKQCEKAKKYLVLKEDLRVNDVNMFLIEIN 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 E + + K+ + + F +K +Y K Sbjct: 236 EIRNRLSQIDEKIKIASSDMESANAEFEKIKADYTK 271 >gi|257451436|ref|ZP_05616735.1| exonuclease SBCC [Fusobacterium sp. 3_1_5R] gi|317058016|ref|ZP_07922501.1| exonuclease SBCC [Fusobacterium sp. 3_1_5R] gi|313683692|gb|EFS20527.1| exonuclease SBCC [Fusobacterium sp. 3_1_5R] Length = 921 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 96/284 (33%), Gaps = 34/284 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63 ++IK + ++ +R+++ + +VF + +G NG GKT+ILEAI R Sbjct: 1 MQIKKVVLNNYRSHSHIEVVFSKGINLILGKNGRGKTSILEAIGLALFHMTDRTGKTKGK 60 Query: 64 -VTRIGSPSF--FSTFARVEGMEG---------------LADISIKLETRDDRSVRCLQI 105 + G F F +G E L D+ + E RD+ + ++ Sbjct: 61 TFMKYGEKECSIFIEFLGNDGREYSIFHHYFLKKPKVSILKDMQTEEEYRDNIEEKLEEL 120 Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFE 163 V D I IF R R +++ + E Sbjct: 121 CGVKAEYRDIY--ENVIVAKQNDFINIFKETPENRARVFNKIFNTEIYNKLFIDLKGFVE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMA---------ELGVKINIARVEMINALSSLIME 214 + ++ + L E + E +M +L AR+E ++ I + Sbjct: 179 QYLKEKEMLEVEENTLRLTLENKEERMEMLQQTEEKWKLYALKKEARLEEKQKIAKKIEQ 238 Query: 215 Y-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 Y K F IK + F + K Q+ L+E + Sbjct: 239 YEFIKREFETIKSKFS-FQEQKIRQNKKELQERLVLAKKAKKAR 281 >gi|91773466|ref|YP_566158.1| SMC-like protein [Methanococcoides burtonii DSM 6242] gi|91712481|gb|ABE52408.1| DNA-binding Structural Maintenance of Chromosomes Protein with ATPase domain [Methanococcoides burtonii DSM 6242] Length = 888 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 10/113 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-ASY-- 61 +K+K + + R+Y L + FD T+ G NG GK+++LEA G R + Sbjct: 1 MKLKRVRVENIRSYIDLDISFDDGVTVVSGVNGSGKSSLLEACFTGLFGS--RALSKDFV 58 Query: 62 -ADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVV 109 +D+ R G+ + +G + K++ R ++ ++ND V Sbjct: 59 ISDIIRKGATKASIVVDFENQGNYYSIEQGYKVDARSGKASNNRSVFKVNDEV 111 >gi|56478791|ref|YP_160380.1| ATP-binding protein [Aromatoleum aromaticum EbN1] gi|56314834|emb|CAI09479.1| hypothetical ATP-binding protein [Aromatoleum aromaticum EbN1] Length = 432 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 16/141 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS------FLSPGRGFRR 58 + I L + FR + F + + VG NG GKT++L+AI+ G+ R Sbjct: 1 MHIDTLRVENFRCFKQETFEFQSGFNLLVGVNGSGKTSLLKAIAAGLATPINGLGKSPRW 60 Query: 59 ASYADVTRIGSPSFFSTFARVEGM---EGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 + ++G E + I+LE S R + + Sbjct: 61 PHA------EEANARLALIELQGRVRYERCYPVRIELEGEVCGSARSWWVEQPGPASQSK 114 Query: 116 LNKHLRISWLVPSMDRIFSGL 136 +H S + RI G Sbjct: 115 F-EHTVFSAIADESARIAQGG 134 >gi|167767268|ref|ZP_02439321.1| hypothetical protein CLOSS21_01787 [Clostridium sp. SS2/1] gi|167711243|gb|EDS21822.1| hypothetical protein CLOSS21_01787 [Clostridium sp. SS2/1] Length = 545 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 65/379 (17%), Positives = 127/379 (33%), Gaps = 69/379 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + I F+ Y ++FD I VGDN GK+ ILEAI+ G + Sbjct: 1 MFIDKVKIHNFKCYRDFEIIFDEGLNIVVGDNEAGKSTILEAINLALTG----------I 50 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G +IS + +D + ++ V I L + Sbjct: 51 IR--------------GKSIWNEISQYIFNKDAVEEYIISLSTVPIA----LPYISIEIY 92 Query: 125 LVPSMDRIFSG-LSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRN-RLLTEGYFDS 180 + + + +G + +R + F A + ++ ++E L+ N + L Y+D Sbjct: 93 FGGNENPLMNGDGNSDRNSSAEGFCFKIAFNEKYAD---EYEALLSQGNIKSLPIEYYDI 149 Query: 181 SWC----SSIEAQMAELGVKIN---IARVE-----MINALSSLIMEY--VQKENFPHIKL 226 W I + + R + ++ + +E + H K+ Sbjct: 150 IWTTFARDVITTRSIPYKSCLIDSSEYRYQSGSDVYLSRIIKGTLEIEDITSIAQAHRKM 209 Query: 227 SLTGFLDGKFDQSFCALKEE-YAKKLFDGRKMDSMSRR---TLIGPHRSDLIVDYCDKAI 282 + D + + ++ ++ +++ + ++ Y K Sbjct: 210 RDSFINDPSIEAINTKINQDTSLTDKKIALSVELVTKNAWENSLVTQLDEIPFYYVGK-- 267 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-- 340 GEQ I L T+ A I+LL+E HL + N L + ++ Sbjct: 268 -------GEQ----CVIK-TELALAKRTSKNASIILLEEPENHLSHTRLNQLIKCISKQY 315 Query: 341 IGSQIFMTGTDKSVFDSLN 359 QI ++ V + L Sbjct: 316 AEKQILISTHSSFVVNKLG 334 >gi|313906345|ref|ZP_07839686.1| SMC domain protein [Eubacterium cellulosolvens 6] gi|313468809|gb|EFR64170.1| SMC domain protein [Eubacterium cellulosolvens 6] Length = 408 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 31/45 (68%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + +K + + FR Y +L + F+++ TI VGDNG GK+ +L+A+S Sbjct: 1 MYLKSIKLHNFRCYENLSVDFNSEFTILVGDNGAGKSALLDAVSI 45 >gi|225570732|ref|ZP_03779755.1| hypothetical protein CLOHYLEM_06833 [Clostridium hylemonae DSM 15053] gi|225160475|gb|EEG73094.1| hypothetical protein CLOHYLEM_06833 [Clostridium hylemonae DSM 15053] Length = 195 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 22/191 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A ++ F T VG NG GK+N+ +A+ L + R S Sbjct: 1 MYLKSIEVQGFKSFAHKIKFDFHNGITAIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + I + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNSDHHLPIDYEEVTVARKLYRSGESEYLINGSGCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ M + Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNMS-VK 179 Query: 164 RLMRGRNRLLT 174 +L R LL Sbjct: 180 KLEEERQNLLR 190 >gi|217077030|ref|YP_002334746.1| exonuclease sbcc, putative [Thermosipho africanus TCF52B] gi|217036883|gb|ACJ75405.1| exonuclease sbcc, putative [Thermosipho africanus TCF52B] Length = 927 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 101/290 (34%), Gaps = 31/290 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + + FR + F + +G NG GK++I EA+S + R + + Sbjct: 1 MIIKKVCLKNFRVHKDREFEFKPGINLLLGKNGTGKSSIFEALSVAFFSKSPRG-TLNSI 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +G + ++ +S + + ++++++++ Sbjct: 60 ITNDGSKKAQIKVEFIASDGK-EYVLEKSIGQSKSSLYSKDGSLKYEGKEDISEYIKTIV 118 Query: 125 LVPS-------------MDRIFSGLSMERRRFLDRMV-----FAIDPRHRRRMIDFERLM 166 + + IFS ER++ DR+ I + + +E+ + Sbjct: 119 GINEEVFNKVIYTYQNQLTDIFSKTPAERKQLFDRLFETDVYREISDKLFKVQQSYEKDL 178 Query: 167 RGRNRLLTEGYFD---------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217 L + + S E ++ E+ +I R E + L + ++ Sbjct: 179 EVNKVELEKIKLELESEEFADLEERIKSHEEKLEEVKNEIENLRAE-VQNLRKR-QKSLE 236 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267 + ++ + GK + + ++ K+L D +K + +T G Sbjct: 237 DIIESYKRIKKDLQMLGKEKEHLNSKLDDLNKRLEDAKKAKDIVEKTKKG 286 Score = 39.5 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS---Q 344 S GEQ V + I A ++++S + +LDE + +LD +++ L + + Q Sbjct: 852 SGGEQVSVAIAIRAALSKILSKSD----FYILDEPTINLDVERKKLLAENIEKLFEDVKQ 907 Query: 345 IFMTGTDKSVFDSLNET 361 +F+ T F + E Sbjct: 908 VFI-ITHDEEFSHMAEN 923 >gi|71735912|ref|YP_272712.1| hypothetical protein PSPPH_0409 [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556465|gb|AAZ35676.1| conserved hypothetical protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 421 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +++ L++ FR Y F + VG NG GKT++L + Sbjct: 1 MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 43 >gi|320322043|gb|EFW78139.1| hypothetical protein PsgB076_24659 [Pseudomonas syringae pv. glycinea str. B076] gi|320330851|gb|EFW86825.1| hypothetical protein PsgRace4_05763 [Pseudomonas syringae pv. glycinea str. race 4] Length = 421 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +++ L++ FR Y F + VG NG GKT++L + Sbjct: 1 MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 43 >gi|255281053|ref|ZP_05345608.1| putative RecF/RecN/SMC N domain protein [Bryantella formatexigens DSM 14469] gi|255268501|gb|EET61706.1| putative RecF/RecN/SMC N domain protein [Bryantella formatexigens DSM 14469] Length = 713 Score = 66.9 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 100/283 (35%), Gaps = 33/283 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ ++ F T VG NG GK+N+ +A+ L + R A+ Sbjct: 1 MYLKSIEVQGFKSFANKMKFQFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAN 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ + F S ++ + + + R RS QIN R Sbjct: 61 MQDVIFSGTENRKPLGFASVAITLDNSDHQLPTDYSEVTVTRRLYRSGESEYQINGTNCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + +RR + + Sbjct: 121 LRDIQELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVK--FKRRKLTTQ 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQK 218 + + N LT S I Q+ L KI + R E + L I ++ + Sbjct: 179 KKLEDENNNLTRVR---DILSEITRQLGPLQKQSEKAKIYLQRKEELKTL--DINMFLLE 233 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + +L D E+ + + Sbjct: 234 DGRVKAQLEEVCQKISISDGDIARAGEQLEAAKSEYEAAEQRM 276 >gi|262184413|ref|ZP_06043834.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC 700975] Length = 806 Score = 66.9 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 21/171 (12%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATNLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MQDVIFAGAGDRKALGRAEVTLTIDNSDGALPIDYSEVSVTRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 ++D + + + I + I +RR +++ + R Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLAEILESRPEDRRAYIEEAAGVLKHR 171 >gi|330984716|gb|EGH82819.1| hypothetical protein PLA107_06796 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 421 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +++ L++ FR Y F + VG NG GKT++L + Sbjct: 1 MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 43 >gi|284164775|ref|YP_003403054.1| SMC domain protein [Haloterrigena turkmenica DSM 5511] gi|284014430|gb|ADB60381.1| SMC domain protein [Haloterrigena turkmenica DSM 5511] Length = 895 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 96/273 (35%), Gaps = 26/273 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-RGFRRASYAD 63 +++ + + F+ Y L + T+ G NG GK+ +LEA+ F G + + D Sbjct: 1 MRVDRVRLLNFKCYGEADLGLERGVTVVHGVNGSGKSTLLEAVFFALYGSKALDDRTLDD 60 Query: 64 VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIRVVD 114 V G + +G E + +KL + +C+ + V R V Sbjct: 61 VIMTGEEEAEVELWFTHDGREYHVERRLKLRGDRATTTKCVLETPTETFEGARDVRREVT 120 Query: 115 ELNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE-RLMR 167 EL + +++ + R + +R+ +D ++ + ++ R Sbjct: 121 ELLRMDAEAFVNCAYVRQGEVNKLIHASPSDRQDMIDDLLQ------LGALEEYRERASD 174 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIK 225 R + T + Q+ + K R+ + + + + E + + E + Sbjct: 175 ARLGVKTVLDGQREVLEDLHKQVEQKEEKDLHERLNGLESRRADVREKIDRFEEQREQAR 234 Query: 226 LSLTGFLDG-KFDQSFCALKEEYAKKLFDGRKM 257 +L D + + + +++ + R Sbjct: 235 QTLETAEDVLERHEETREEIDRLDEEIEELRSK 267 >gi|225164963|ref|ZP_03727174.1| chromosome segregation protein SMC [Opitutaceae bacterium TAV2] gi|224800421|gb|EEG18806.1| chromosome segregation protein SMC [Opitutaceae bacterium TAV2] Length = 777 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 89/275 (32%), Gaps = 39/275 (14%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A L F+ T VG NG GK+N+ +AI L + R Sbjct: 1 MHLKALKLHGFKSFADQSTLRFEPGVTAIVGPNGCGKSNVADAIRWVLGEQSAKALRGGK 60 Query: 61 YADVTRIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 DV G+ S T + +I I D N Sbjct: 61 MQDVIFEGADTRKPAQMCEVSLILTDCEKQLGSEFHEIEIMRRVYRDGGGEYFF-NGQPC 119 Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 R+ D + + +D+I S ERR + + + Sbjct: 120 RLKDIQKLFMDTGIGRTSYSIMAQGQIDQILSSKPEERRAVFEEAAG---------ITKY 170 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 + + L D + + + E+G +I + + AL + + + Sbjct: 171 KAQRKE--ALQKLAQTDQNLVRVADV-VGEVGRQIGSLKRQASKALRYKKLSWRLR---- 223 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 H+ L+ G+ + + L+E+ K Sbjct: 224 HLALAHHGYHHEQVSATLATLEEQVIKLRAAAETR 258 >gi|225020942|ref|ZP_03710134.1| hypothetical protein CORMATOL_00953 [Corynebacterium matruchotii ATCC 33806] gi|224946314|gb|EEG27523.1| hypothetical protein CORMATOL_00953 [Corynebacterium matruchotii ATCC 33806] Length = 538 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 64/385 (16%), Positives = 120/385 (31%), Gaps = 77/385 (20%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62 + I ++I +R + I VG N GK+ +LEAIS GR G R + Sbjct: 1 MMITKIHIQGYRKLKEFLFEPNNGMNIIVGGNDAGKSTLLEAISLCLTGRINGQRASDVL 60 Query: 63 DVTRIGSPSFFSTFARVEGMEG----LADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 + + FA + + I + LE +N++ L+ Sbjct: 61 NPYWFNTELVAEFFAARKNNQTVPPPEIRIELHLEVSKGELENMRGVNNMKREDAAGLS- 119 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP-------RHRRRMIDFE-RLMRGRN 170 W+ P + + LD +D + +F ++ R Sbjct: 120 ----MWIHPDPEYL---------EELDEYFSQVDCPPIIPIEYYLVEWKNFAGTIIFNRP 166 Query: 171 RLLTEGYFDSSW------CSSIEAQMAEL------GVKINIARVEMINALSSLIMEYVQK 218 + L +S Q+ E K+++ ++ N L S ++E + Sbjct: 167 KGLGVAVINSRTIRSDRGMDFYTKQLLESKLDPKDRNKVSVKHRQLRNNLGSELIEDINT 226 Query: 219 ENFPHIKLSLTG--FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 ++ S +G + + DQS E + + P + Sbjct: 227 SLHENLSPSESGRWLVGLQIDQSRSTSWE------------------STLIPEIDRIPFS 268 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 G Q + + L+ + LL++E HL + L Sbjct: 269 MSG---------QGAQVIAKASLALSQSE------DSTSFLLIEEPENHLTHTRLRELLS 313 Query: 337 IVT--DIGSQIFMTGTDKSVFDSLN 359 I+ +G Q+F+T V + L Sbjct: 314 IIERNSMGRQVFITTHSSYVLNRLG 338 >gi|291614647|ref|YP_003524804.1| SMC domain protein [Sideroxydans lithotrophicus ES-1] gi|291584759|gb|ADE12417.1| SMC domain protein [Sideroxydans lithotrophicus ES-1] Length = 685 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 25/45 (55%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + IK L I FR + + FD + I VG N +GKT ILE+I Sbjct: 1 MHIKTLRIKNFRAIEDVNVEFDNRVNIIVGPNAIGKTTILESIRL 45 >gi|298485068|ref|ZP_07003165.1| Putative ATP binding protein SugR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160478|gb|EFI01502.1| Putative ATP binding protein SugR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 421 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +++ L++ FR Y F + VG NG GKT++L + Sbjct: 1 MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 43 >gi|306781120|ref|ZP_07419457.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu002] gi|308326060|gb|EFP14911.1| chromosome partition protein smc [Mycobacterium tuberculosis SUMu002] Length = 542 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + ++ I +RR F++ + R E Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 + +R + + + + + Q+ LG Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206 >gi|58177330|pdb|1XEW|X Chain X, Structural Biochemistry Of Atp-Driven Dimerization And Dna Stimulated Activation Of Smc Atpases. gi|58177332|pdb|1XEX|A Chain A, Structural Biochemistry Of Atp-Driven Dimerization And Dna Stimulated Activation Of Smc Atpases Length = 182 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 24/164 (14%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 I+ L + F++Y + + F T VG NG GK+NI +AI F+ G R + Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63 Query: 62 ADVTRIGS-PSFFSTFARVEGMEGLADISIKL---ETRDDRSVR-----CLQINDVVIRV 112 +D+ GS + +A V D + E R V +N Sbjct: 64 SDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRA-T 122 Query: 113 VDELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRM 147 E+ L + + P I +ERR +D + Sbjct: 123 RSEILDILTAAMISPDGYNIVLQGDITKFIKMSPLERRLLIDDI 166 >gi|289168157|ref|YP_003446426.1| hypothetical protein smi_1318 [Streptococcus mitis B6] gi|288907724|emb|CBJ22561.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 728 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 70/416 (16%), Positives = 137/416 (32%), Gaps = 71/416 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 + I L I FRNY S FD + +G+N GKTN L A+ L S + Sbjct: 1 MFISTLQIRNFRNYESEIFRFDNETNTIIGENDSGKTNALTALRILLDDSYYYSSKTLKE 60 Query: 62 ADV---TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 +D + G + A EG I E D+ + +N +++EL Sbjct: 61 SDFFHGIQNGWQGHWIIISATFEG--------ISEEEFDNEICASISLNSESQTILEELI 112 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-----RMIDFERLMRGRNRL 172 + V S+ R++ D + R+ D+E ++ L Sbjct: 113 SNADKG--VGSISLFIRPNKAIRKQLFDISTELDSHQFNEFRNSIRLSDYEFYYTSKSNL 170 Query: 173 ----------LTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLIMEYV 216 L D+ + E A LG +I+++ V ++AL ++ E Sbjct: 171 NFCINENYDKLVGRLNDNIASNPEEDDEALLGSRIDMSDIFKHISVVYVDALRDVLREMK 230 Query: 217 -QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-------GRKMDSMSRRTLIGP 268 + I ++ + +S + ++ + + G ++ + Sbjct: 231 NNRNPVKRIMETIESKISSDNVESLKTIIQQLNETITSVPEIRKIGENINRQLNSIIGSV 290 Query: 269 HRSDLI--VDYCDKAITIAHGSTGEQK----------------VVLVGIFLAHARLISNT 310 + +L+ D S K ++ + + + + Sbjct: 291 YSPNLLSSTMSDDMGSLAKFLS---MKPEQNIDLDLLGLGHLNMIYLALKIVEFEA-CRS 346 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRI--VTDIGSQIFMTGTDKSVFDSLNETAKF 364 I+L++E AH+ + LF + +QI MT T ++E ++ Sbjct: 347 RELLNIMLIEEPEAHIHHHIQKTLFEGLNLQKNYTQILMT-THSVHLAEVSEISRM 401 >gi|255659557|ref|ZP_05404966.1| ATP binding protein [Mitsuokella multacida DSM 20544] gi|260848113|gb|EEX68120.1| ATP binding protein [Mitsuokella multacida DSM 20544] Length = 422 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 27/45 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + +K + I +F+ +L F + +G+NG GKT++LEA++ Sbjct: 1 MHVKTIAIHDFKGIEHCQLTFKPGFNLIIGENGKGKTSLLEALAI 45 >gi|55378582|ref|YP_136432.1| chromosome segregation protein [Haloarcula marismortui ATCC 43049] gi|55231307|gb|AAV46726.1| structural maintenance of chromosomes [Haloarcula marismortui ATCC 43049] Length = 908 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 26/259 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K + + +S F+ Y L D T+ G NG GK+++LEA F G + DV Sbjct: 18 MKFQRVKLSNFKCYDDADLRLDNGVTVIHGLNGSGKSSLLEACFFALYGSKALDENLGDV 77 Query: 65 TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIRVVDE 115 IG+ + G + ++ + +C+ + V R + E Sbjct: 78 VTIGADDCTVELWFSHAGGDYHLTRRVRATGAQPTTAKCVLETPEGNYEGARDVRRRITE 137 Query: 116 LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE-RLMRG 168 L + +++ + R + + +R+ LD ++ ++ + R Sbjct: 138 LLRMDSEAFVNCAYVRQGEVNKLINASPGDRQDMLDDLLQ------LGKLEAYRERASDA 191 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN----ALSSLIMEYVQKENFPHI 224 R + S ++ Q+ E K R+ + L I ++ Sbjct: 192 RVGVGRVRDDKQGALSQLDEQIQEKEEKDLHERLNGLETKESELQDEIEHIEDQKATAEE 251 Query: 225 KLSLTGFLDGKFDQSFCAL 243 L+ + ++++ L Sbjct: 252 TLTQAESVLEEYEEKRDEL 270 >gi|27817689|emb|CAD61116.1| hypothetical protein [Cupriavidus oxalaticus] Length = 712 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 9/62 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + +RN+A+ +L+F +G+NG GKTN+ AI L ++ Sbjct: 1 MHISKLGLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLL---------DDNM 51 Query: 65 TR 66 R Sbjct: 52 IR 53 >gi|115524490|ref|YP_781401.1| SMC domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115518437|gb|ABJ06421.1| SMC domain protein [Rhodopseudomonas palustris BisA53] Length = 827 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 42/232 (18%) Query: 145 DRMVFAIDPRHRRRMIDFERLMR---GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 D D + + +RL+ R+ L ++ AQ A + +I Sbjct: 446 DIESKQGDHTYIKAKAKIDRLLELQAERDLGLRTHDALVKLSEALTAQAATVSAEIRKKV 505 Query: 202 VEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 +++ L + I + +Q I+L L E+ + +D Sbjct: 506 QALLDKLQTPMNDIYKVIQGIGATPIRLELPA--------------EDDTNQQRLNLLID 551 Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318 RT + P + S + + + + +A I API+ Sbjct: 552 FAKNRTGVQPG---------------GYLSDSQIHSLALALRMA---AIKQFNNGAPIIA 593 Query: 319 LDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNET--AKFMR 366 LD+I D D R + ++ QI +T D+ F+ L + AK Sbjct: 594 LDDIVTSYDADHRRTIAGLIASKFGDCQILITTHDERFFNYLKDQLEAKTWH 645 Score = 39.5 bits (91), Expect = 0.79, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 74/202 (36%), Gaps = 30/202 (14%) Query: 7 IKFLNISEFRNY-ASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ L + FR Y + F + + NG GK+++++A+ F+ + + Sbjct: 7 LQSLGLVGFRAYLQPMTFDFSKKRCLAVFAPNGSGKSSVIDALEFVF-------SKDGTL 59 Query: 65 TRIGS-----PSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNK 118 R+G + A E ++ ++ ++V + R + + Sbjct: 60 ERLGQRAINNQAGPVALAHNLAEEAKIAPAVTIDVVSGKNVSNGSRSATGAKRPIPAVAT 119 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR--------MIDFERLMRGRN 170 + + VP I G ++ R F++ + + R+ +++ ++ +R Sbjct: 120 TVNACFAVPP---IIRGHAL--RTFVE--IHTPEQRYTDVANWLQLGPLVEVQKNLRALR 172 Query: 171 RLLTEGYFDSSWCSSIEAQMAE 192 + D + ++ Q+A Sbjct: 173 TQIKAAAEDETTLQRVDTQLAR 194 >gi|257066165|ref|YP_003152421.1| SMC domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798045|gb|ACV28700.1| SMC domain protein [Anaerococcus prevotii DSM 20548] Length = 1172 Score = 66.9 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 21/175 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 ++++ + + F+++A ++ FD + T VG NG GK+NI +A+ L + R + Sbjct: 1 MRLENVELKGFKSFADRTKIEFDEKITAVVGPNGSGKSNISDAVRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 DV G S S A V D ++ L + R + +IN +R Sbjct: 61 MNDVIFQGGESSKSLNLAEVNLNFSNEDKALDLSYDKVKISRRIYRDGENEYRINGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158 + D + K +D I S +RR + + RR Sbjct: 121 LKDVRELFLDTGVGKEGYSIISQGRIDEIISSSPKDRRNIFEEASGIAKHKFRRD 175 >gi|255994064|ref|ZP_05427199.1| putative RecF/RecN/SMC N domain protein [Eubacterium saphenum ATCC 49989] gi|255993732|gb|EEU03821.1| putative RecF/RecN/SMC N domain protein [Eubacterium saphenum ATCC 49989] Length = 1187 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L+I F+++A +++ FD T VG NG GK+N+ +A+ ++ R R Sbjct: 1 MRLKSLSIKGFKSFADPVKIDFDEGITCIVGPNGSGKSNVSDALRWVFGEQSARTLRGYK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ + + DI +++ R RS +IN R Sbjct: 61 MEDVIFAGTEKRRKQGLAEVTVVIDNSDRMLDIEYNEVEITRRLFRSGESEHRINGNKCR 120 Query: 112 VVD 114 ++D Sbjct: 121 LMD 123 >gi|238618542|ref|YP_002913367.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.16.4] gi|238379611|gb|ACR40699.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.16.4] Length = 864 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + ++ F ++ + F + + VG NG GK++I++ I S R R + ++ Sbjct: 1 MRIDKITLTNFLSHEHSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS + I I + R R ++ V R ++ + Sbjct: 60 IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116 Query: 125 LVPSMDRI 132 + + Sbjct: 117 GIDKDIAL 124 Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 +M+ M + + G + +I + I S GE+ + + + LA A+ + + T Sbjct: 739 KNVEMEIMPKTSRGKGSGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357 +LDE + HLD+ ++ L I+ QI + D+ V + Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844 >gi|229577881|ref|YP_002836279.1| Rad50 zinc hook domain protein [Sulfolobus islandicus Y.G.57.14] gi|228008595|gb|ACP44357.1| Rad50 zinc hook domain protein [Sulfolobus islandicus Y.G.57.14] Length = 864 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + ++ F ++ + F + + VG NG GK++I++ I S R R + ++ Sbjct: 1 MRIDKITLTNFLSHEHSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS + I I + R R ++ V R ++ + Sbjct: 60 IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116 Query: 125 LVPSMDRI 132 + + Sbjct: 117 GIDKDIAL 124 Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 +M+ M + + G + +I + I S GE+ + + + LA A+ + + T Sbjct: 739 KNVEMEIMPKTSRGKGSGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357 +LDE + HLD+ ++ L I+ QI + D+ V + Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844 >gi|118580293|ref|YP_901543.1| hypothetical protein Ppro_1874 [Pelobacter propionicus DSM 2379] gi|118503003|gb|ABK99485.1| conserved hypothetical protein [Pelobacter propionicus DSM 2379] Length = 703 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 + I L+I FRN+ S +L F +G+NG GKTN+ ++ L Sbjct: 1 MHISCLSIRNFRNFKSAQLHFRKGINTIIGENGSGKTNLFFSLRIL 46 >gi|73670048|ref|YP_306063.1| hypothetical protein Mbar_A2572 [Methanosarcina barkeri str. Fusaro] gi|72397210|gb|AAZ71483.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 650 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 63/407 (15%), Positives = 125/407 (30%), Gaps = 88/407 (21%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRR----- 58 + +K +++ FR + L ++ + +G N GKT++L+++ LS G R Sbjct: 28 MYLKKIHVKNFRCINDINLELNSGLNVIIGANNSGKTSLLDSLRLALSIGNYSRSIYVSS 87 Query: 59 --------ASYADVTRIG------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104 + I +P F + + + ++L R R + Sbjct: 88 EDFFVDEFGKKSQTIEIDLTFSELTPEDMGVFIEMLKVNDDGNHELELHVRYKRERK--- 144 Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 N + V + + + +F + + D E Sbjct: 145 -NGIEKIRVRYWGGEKEANTIPIEVMELFY------------------IVYLEALRDSEN 185 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLIMEYVQK 218 ++ NR G AQ + +I + E+I I E+++ Sbjct: 186 YLKP-NRGNKLGQLFLKLVPDETAQ-EKHAQQIYESITSNEDWNELITDARKKINEHLEN 243 Query: 219 ENFPHIKLSLT-GFLDGKFDQSFCALK------EEYAKKLFDGRKMDSMSRRTLIGPHRS 271 H L + F F + LK ++ ++L + + + PH Sbjct: 244 TTLEHDTLRIDIDFAPVDFTKIAERLKIYIPILKKIKRELIENIFEEEGWEKYFEYPHSD 303 Query: 272 DLIVDYCDKAITIAH-GSTGEQK------------------------VVLVGIFLA-HAR 305 LI+ K + S E K ++ + + Sbjct: 304 KLILKTDIKELLKNEVNS--ELKFKISKLEKFIQKFEIYQNGLGYNNLIYIATIIGDLIE 361 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRI---VTDIGSQIFMTG 349 ++ + LL++E AHL +N LF + QIF+T Sbjct: 362 RVNRKSENYIALLIEEPEAHLHPQLQNILFNYFKNIESKNIQIFLTS 408 >gi|227826474|ref|YP_002828253.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.14.25] gi|229583636|ref|YP_002842137.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.16.27] gi|227458269|gb|ACP36955.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.14.25] gi|228018685|gb|ACP54092.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.16.27] Length = 864 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + ++ F ++ + F + + VG NG GK++I++ I S R R + ++ Sbjct: 1 MRIDKITLTNFLSHEHSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS + I I + R R ++ V R ++ + Sbjct: 60 IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116 Query: 125 LVPSMDRI 132 + + Sbjct: 117 GIDKDIAL 124 Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 +M+ M + + G + +I + I S GE+ + + + LA A+ + + T Sbjct: 739 KNVEMEIMPKTSRGKGSGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357 +LDE + HLD+ ++ L I+ QI + D+ V + Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844 >gi|227829083|ref|YP_002830862.1| Rad50 zinc hook domain protein [Sulfolobus islandicus L.S.2.15] gi|284996470|ref|YP_003418237.1| Rad50 zinc hook [Sulfolobus islandicus L.D.8.5] gi|227455530|gb|ACP34217.1| Rad50 zinc hook domain protein [Sulfolobus islandicus L.S.2.15] gi|284444365|gb|ADB85867.1| Rad50 zinc hook [Sulfolobus islandicus L.D.8.5] Length = 864 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + ++ F ++ + F + + VG NG GK++I++ I S R R + ++ Sbjct: 1 MRIDKITLTNFLSHEHSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS + I I + R R ++ V R ++ + Sbjct: 60 IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116 Query: 125 LVPSMDRI 132 + + Sbjct: 117 GIDKDIAL 124 Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 +M+ M + + G + +I + I S GE+ + + + LA A+ + + T Sbjct: 739 KNVEMEIMPKTSRGKGSGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357 +LDE + HLD+ ++ L I+ QI + D+ V + Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844 >gi|333024186|ref|ZP_08452250.1| putative chromosome segregation protein [Streptomyces sp. Tu6071] gi|332744038|gb|EGJ74479.1| putative chromosome segregation protein [Streptomyces sp. Tu6071] Length = 1287 Score = 66.5 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 94/273 (34%), Gaps = 29/273 (10%) Query: 11 NISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYADVTR 66 + F+++AS L F+ T VG NG GK+N+++A++++ + R DV Sbjct: 2 TLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKSLRGGKMEDVIF 61 Query: 67 IGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIRVVDE-- 115 G+ ++ +G I T QIN R++D Sbjct: 62 AGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTIARTMFRNGGSEYQINGDTCRLLDIQE 121 Query: 116 ------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + + + + +D + M RR F++ + R E+ +R Sbjct: 122 LLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEASGVLKHR-----KRKEKALRKL 176 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFPHIKLSL 228 + + + Q+ LG + +AR + + + + ++ + + L Sbjct: 177 DAMRANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLSDDLVTLRR 234 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + + + A KE L ++ Sbjct: 235 ALDAEVADEAALKARKEAAESALKTALAREARL 267 >gi|225571977|ref|ZP_03780841.1| hypothetical protein RUMHYD_00271 [Blautia hydrogenotrophica DSM 10507] gi|225040510|gb|EEG50756.1| hypothetical protein RUMHYD_00271 [Blautia hydrogenotrophica DSM 10507] Length = 1186 Score = 66.5 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 119/329 (36%), Gaps = 49/329 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++A + F T VG NG GK+N+ +A+ ++ + R + Sbjct: 1 MYLKNIEVYGFKSFAQKINFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGGN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQI-NDVVIR 111 DV G+ S+ S ++ + + + + R RS + N R Sbjct: 61 MQDVIFSGTENRKPLSYASVSITLDNGDRKLPVDYKEVTVTRRLYRSGESEYLMNGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ + Sbjct: 121 LKDIQELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKN-TTLK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMI------------N 206 +L + L+ + S ++ Q+ L KI + + + Sbjct: 180 KLEEEKQNLVRV----TDILSELDRQLGPLERQSETAKIYLEQKSRLKEKEAGLFLLEME 235 Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA------KKLFDGRKMDSM 260 + + E QK++ +L T G+ + + L+++ +++ + + D++ Sbjct: 236 EIDEQLQEKKQKKSLTEEQLQKTQESYGQVKEEYEELEQKLQKLNTRIEQIREETQQDAL 295 Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGST 289 R+ L G + K + S Sbjct: 296 RRQQLEGQVEVLKEQIHGAKQNEEHYKSR 324 >gi|323473551|gb|ADX84157.1| recombination repair enzyme Rad50 like protein [Sulfolobus islandicus REY15A] Length = 864 Score = 66.5 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + ++ F ++ + F + + VG NG GK++I++ I S R R + ++ Sbjct: 1 MRIDKITLTNFLSHEHSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS + I I + R R ++ V R ++ + Sbjct: 60 IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116 Query: 125 LVPSMDRI 132 + + Sbjct: 117 GIDKDIAL 124 Score = 41.4 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 +M+ M + + G + +I + I S GE+ + + + LA A+ + + T Sbjct: 739 KNVEMEIMPKTSRGKGSGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357 +LDE + HLD+ ++ L I+ QI + D+ V + Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844 >gi|310639249|ref|YP_003944008.1| SMC domain-containing protein [Ketogulonicigenium vulgare Y25] gi|308752825|gb|ADO43969.1| SMC domain-containing protein [Ketogulonicigenium vulgare Y25] Length = 423 Score = 66.5 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 62/369 (16%), Positives = 123/369 (33%), Gaps = 63/369 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA--ISFLSPGRGFRRASYA 62 +KI+ L+++ R + FD T+ VG NGVGK+++LEA +S F + Sbjct: 1 MKIRRLSVAGLRGFDQATFEFDPHFTLLVGVNGVGKSSVLEALRVSLSRVLPKFTASRST 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-VVDELNKHLR 121 + FA + + A +++ L+ R L ++ R V DE Sbjct: 61 PL----------AFAADDIRQVSASLTVDLDLEFPEGQRNLLLHKPRERFVPDEEGSVRN 110 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF---ERLMRGRNRLLTEGYF 178 + P + + + D + E++ GR+R Sbjct: 111 ATLDTPEREEL---SPPHWPK-ADPSGNQPIAIYFGTRRSHPTDEQIKIGRSRG------ 160 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSL-IMEYVQKENFPHIKLSLTGFLDGKFD 237 Q A ++ R + ++S + + E P + L Sbjct: 161 ---------GQAAAFADALSDVRPLHLRDMASWMVAQEALAEELPRARFHLEALKS---- 207 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 R + + R G + L++ + + + S GE+ V+ Sbjct: 208 --------------AAARFLPTCKGLRATNGADKPRLLISKDGIELDVRYLSEGERGVLA 253 Query: 297 VGI----FLAHAR-LISNTTGF-APILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMT 348 + + L+ A + + G ++L+DEI H+ + + ++T+ Q T Sbjct: 254 LALDLARRLSQANPALDDPIGDGVGVVLIDEIDMHMHPLWQRQIVSLLTETFCSCQFIAT 313 Query: 349 GTDKSVFDS 357 V Sbjct: 314 THSPQVIGE 322 >gi|227432060|ref|ZP_03914074.1| SMC structural maintenance of chromosomes partitioning protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352177|gb|EEJ42389.1| SMC structural maintenance of chromosomes partitioning protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1185 Score = 66.5 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 116/320 (36%), Gaps = 42/320 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +K+K L IS F+++A + T +G NG GK+NI+EAI ++ + R Sbjct: 1 MKLKSLEISGFKSFADKTMIELMPGMTGIIGPNGSGKSNIIEAIQWVMGEQSAKDLRGTK 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 +DV G+ A V +D ++ + + R R L IN V R Sbjct: 61 MSDVIFGGTDKRGALNRAEVSITFDNSDHYVQSDFNEIRITRKLYRSGESSYLINGVESR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ +RR ++ + +++ + Sbjct: 121 LRDIHELFMDTGLGRESFSIISQGRVESIFNAKPEDRRGIIEEVAGVYK--YKQNKEKAQ 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK-------------INIARVEM-INALS 209 + + + L+ S +AE + ++ AR+ I+ L+ Sbjct: 179 KELTQTSDNLSRVADIIHEIESRIDLLAEQAAEATDYLAQKERFDTLDKARLAWSIHDLN 238 Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 I ++ +++ T D L ++ +++ DS+ + L Sbjct: 239 GQISSTTKQVETHDKRVNQTKL---ALDIVNKKLLDKRQERVSSQLSRDSLQAKILECTQ 295 Query: 270 RSDLIVDYCDKAITIAHGST 289 + + ++ K + ST Sbjct: 296 KRERLI--GAKNLGAQQIST 313 >gi|169834374|ref|YP_001694677.1| chromosome segregation protein SMC [Streptococcus pneumoniae Hungary19A-6] gi|168996876|gb|ACA37488.1| chromosome segregation protein SMC [Streptococcus pneumoniae Hungary19A-6] Length = 1179 Score = 66.5 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENACKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|18312382|ref|NP_559049.1| partial recF-like protein [Pyrobaculum aerophilum str. IM2] gi|18159834|gb|AAL63231.1| partial recF homolog [Pyrobaculum aerophilum str. IM2] Length = 91 Score = 66.5 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 21/41 (51%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 + L I F++ L L + VG N GKTNILEAI Sbjct: 8 ETLLIENFKSIRRLELKLRPGVNLLVGPNASGKTNILEAIY 48 >gi|294785833|ref|ZP_06751121.1| exonuclease SBCC [Fusobacterium sp. 3_1_27] gi|294487547|gb|EFG34909.1| exonuclease SBCC [Fusobacterium sp. 3_1_27] Length = 921 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 17/170 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62 + IK + + +R++++ + F + +G NG GKT+ILEAIS + R Sbjct: 1 MIIKKVQLENYRSHSNTTVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQI----NDVVIRVVDELN 117 + G S + ++ + +T+ + I + + ++EL Sbjct: 61 SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMIGSEYDGDIQEKLEELC 120 Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157 + + IF R + +++ I + Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKDSGTTREKTFNKIFNTQIYKKMYD 170 >gi|322376802|ref|ZP_08051295.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. M334] gi|321282609|gb|EFX59616.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. M334] Length = 1179 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNNDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLTSYYQKREKLEEE-NQTLKKQRQ 277 >gi|325277138|ref|ZP_08142784.1| hypothetical protein G1E_26248 [Pseudomonas sp. TJI-51] gi|324097715|gb|EGB95915.1| hypothetical protein G1E_26248 [Pseudomonas sp. TJI-51] Length = 575 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 63/386 (16%), Positives = 119/386 (30%), Gaps = 78/386 (20%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I+ L IS FR+ +L V +G GK++IL+AI R R ++ D+ Sbjct: 3 RIRRLQISNFRSIQALDWVPAPGINCLIGPGDSGKSSILDAIDLCVGAR--RGGTFGDM- 59 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 FF+ V +A + L D +D + LR Sbjct: 60 -----DFFALNVDVPITISVALGDLPLSLMD----------------IDVYGEFLR--GF 96 Query: 126 VPSMDRIFSGLSMERRRFLDRMV---FAIDPRH-----RRRMIDFERLM--RGRNRLLT- 174 P + + + ++P R ER + + R L Sbjct: 97 HPGTGEVEDEPRAGLETVITLRLQVGADLEPVWTLFSERAEQQQLERTLPWKERAALAPA 156 Query: 175 ----EGYFDSSW-----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + SW + + + AELG ++ A + + E Sbjct: 157 RIGSFASSNLSWSRGSVLNRLTDERAELGAELARAARQARANFGNQAAE----------H 206 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 L+ T + + Q + L D + + + + I + Sbjct: 207 LTQTLEVVQRTAQHLGVSVGAMPQALLDAHSVSIGEGAIAL----------HSETGIPLR 256 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343 TG ++++ G+ API L+DE+ L+ + + + Sbjct: 257 SLGTGSSRLLVAGLQ-------RAAASAAPIALVDEVEYGLEPHRLMRFLDSLGAKDAAA 309 Query: 344 --QIFMTGTDKSVFDSLNETAKFMRI 367 Q+FMT L+ ++ + Sbjct: 310 PLQVFMTTHSPVALRELSG-SQLFVV 334 >gi|212224573|ref|YP_002307809.1| chromosome segregation protein [Thermococcus onnurineus NA1] gi|212009530|gb|ACJ16912.1| DNA double-strand break repair ATPase [Thermococcus onnurineus NA1] Length = 884 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 99/269 (36%), Gaps = 33/269 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--- 61 +KI+ L I +FR++ ++ F + + +G NG GK+++L+A+ + Sbjct: 1 MKIEKLIIKDFRSHKLTKVTFTSGINLIIGQNGSGKSSLLDALLIGLYWPS--KPKDLKK 58 Query: 62 ADVTRI-GSPSFFSTFARVEGMEGLADISIK-----LETRDDRSVRCLQINDVVIR---- 111 D RI G+ + + F +G++ +I ++ D S R L+ +R Sbjct: 59 DDFLRIGGTTTEITVFFEKDGVKYQIHRNITRGLSFVKYHDGSSWRGLESGQKQVRDWME 118 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 + + L ++ R + + +++ ++ L+ R Sbjct: 119 KLVPYDVFLNAIYIRQGEIDAILESDESREKVVRQVLGLDRYE-----NAYKNLLEVRKE 173 Query: 172 LLTEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 + + S E ++ K +++IN LS I + +++ +L Sbjct: 174 IDARIRAIEDYLKSTENIDELIGNMEKELAETLKVINELSPEIPKLIKELEGVEKRL--- 230 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 + AL EE + RK + Sbjct: 231 --------RDLDALAEEINALQLETRKRE 251 Score = 44.1 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 8/139 (5%) Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-HRSDLIVDYCDKAITIAHGSTGEQKV 294 + A E A ++F+ + S T+ ++ L V Y K + S GE+ Sbjct: 739 LKEGALAKVGELASEIFEELTEEKYSGVTVKAEENKVKLGVIYNGKEYGLGFLSGGERIA 798 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---DIGSQIFMTGTD 351 + + LA + ++ G +L+LDE + +LD+++R L I+ Q+ + D Sbjct: 799 LGLAFRLALSLYLA---GEISLLILDEPTPYLDDERRRRLVDIMQRYLRKIPQVIVVSHD 855 Query: 352 KSVFDSLNETAKFMRISNH 370 + + D+ + + + N Sbjct: 856 EELKDA-ADRVIRVSLENG 873 >gi|299821774|ref|ZP_07053662.1| cell division protein Smc [Listeria grayi DSM 20601] gi|299817439|gb|EFI84675.1| cell division protein Smc [Listeria grayi DSM 20601] Length = 1185 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 59/326 (18%), Positives = 110/326 (33%), Gaps = 64/326 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI ++ + R Sbjct: 1 MLLKKLEMNGFKSFADKVTVDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV GS S F +E + + I + R IN R Sbjct: 61 MGDVIFAGSDSRKPINFAEVSLVLENEDHFLPLDYSEIAITRRIYRNGDSEFLINHEQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + +D I + ERR + ++ ++ Sbjct: 121 LKDIVELFMDSGLGRESFSIISQGKIDEILNSKPEERRTIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + + + LTE + +E Q+ L + + I + Q Sbjct: 172 QRKKQAEQKLTETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLFDGRK--MDSMSRRTLIGPHRSD 272 KE ++SL G + ++++A + LF R+ + T Sbjct: 219 KEELEKYEVSLLATEIGGLETKLEKERDDFAANSQALFKLREKIREEEQHVT-----EQK 273 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVG 298 + D+ I +QK++ + Sbjct: 274 RSLTELDEKIDAN-----QQKLLQLA 294 >gi|149007090|ref|ZP_01830759.1| chromosome segregation protein SMC [Streptococcus pneumoniae SP18-BS74] gi|307127163|ref|YP_003879194.1| chromosome segregation protein SMC [Streptococcus pneumoniae 670-6B] gi|147761394|gb|EDK68360.1| chromosome segregation protein SMC [Streptococcus pneumoniae SP18-BS74] gi|306484225|gb|ADM91094.1| chromosome segregation protein SMC [Streptococcus pneumoniae 670-6B] Length = 1179 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|160880575|ref|YP_001559543.1| chromosome segregation protein SMC [Clostridium phytofermentans ISDg] gi|160429241|gb|ABX42804.1| chromosome segregation protein SMC [Clostridium phytofermentans ISDg] Length = 1185 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 32/230 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ + F T VG NG GK+N+ +A+ L + R A+ Sbjct: 1 MYLKSIEVHGFKSFANKITFQFKNGITGIVGPNGSGKSNVADAVRWVLGEQSAKSLRGAN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ F ++ + I + T R R IN R Sbjct: 61 MQDVIFSGTQMRKSLGFAYVAITLDNSDHKLPIEYEEVTVSRRVYRSGESEYMINGTNCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + Sbjct: 121 LRDVQELFMDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVK-------FKKR 173 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELG--VKINIARVEMINALS 209 + + R+ S IE Q+ L ++ + + L Sbjct: 174 KALAERDLEAERLNLSRVSDIISEIERQIGPLAKQSEVAKEYLRLKEQLK 223 >gi|194398150|ref|YP_002037847.1| chromosome segregation protein smc [Streptococcus pneumoniae G54] gi|194357817|gb|ACF56265.1| chromosome segregation protein smc, putative [Streptococcus pneumoniae G54] Length = 1179 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|148998679|ref|ZP_01826118.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP11-BS70] gi|168491167|ref|ZP_02715310.1| chromosome segregation protein SMC [Streptococcus pneumoniae CDC0288-04] gi|168575702|ref|ZP_02721617.1| chromosome segregation protein SMC [Streptococcus pneumoniae MLV-016] gi|307067895|ref|YP_003876861.1| chromosome segregation ATPase [Streptococcus pneumoniae AP200] gi|147755516|gb|EDK62564.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP11-BS70] gi|183574446|gb|EDT94974.1| chromosome segregation protein SMC [Streptococcus pneumoniae CDC0288-04] gi|183578276|gb|EDT98804.1| chromosome segregation protein SMC [Streptococcus pneumoniae MLV-016] gi|306409432|gb|ADM84859.1| Chromosome segregation ATPase [Streptococcus pneumoniae AP200] Length = 1179 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|15922327|ref|NP_377996.1| hypothetical protein ST2010 [Sulfolobus tokodaii str. 7] gi|15623116|dbj|BAB67105.1| 382aa long hypothetical protein [Sulfolobus tokodaii str. 7] Length = 382 Score = 66.1 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 11/111 (9%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + IK L I F++Y F + + VG NG GKTN+++A SFL Sbjct: 14 HM-IKRLAIKNFKSYRDAEFEFG-KVNVVVGPNGSGKTNLVDAFSFLKQLIRPLSYPPYP 71 Query: 64 VTRIG--------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 R G + G D ++ + ++ IN Sbjct: 72 FIRWGDYKNVIFMQDENLDISFEINGTYKSKDYHYEVSLN-NLQIKKEIIN 121 >gi|326789905|ref|YP_004307726.1| hypothetical protein Clole_0795 [Clostridium lentocellum DSM 5427] gi|326540669|gb|ADZ82528.1| hypothetical protein Clole_0795 [Clostridium lentocellum DSM 5427] Length = 540 Score = 66.1 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 39/126 (30%), Gaps = 8/126 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L I F L A + G GKT+ILEAI R ++V Sbjct: 1 MKIKRLEIKNFIGVKELNWSPKAGVNVLKGRKAEGKTSILEAIEKAFTNFSRR----SEV 56 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G EG+E I + IN EL K + Sbjct: 57 VRHGEDEATLYVETDEGLEIDRRIRTEKSDYMKLRQEGKAINSTE----SELRKLISGDI 112 Query: 125 LVPSMD 130 P Sbjct: 113 FRPLDF 118 >gi|296111746|ref|YP_003622128.1| cell division protein Smc [Leuconostoc kimchii IMSNU 11154] gi|295833278|gb|ADG41159.1| cell division protein Smc [Leuconostoc kimchii IMSNU 11154] Length = 1184 Score = 66.1 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 102/279 (36%), Gaps = 27/279 (9%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +K+K L IS F+++A + F T VG NG GK+NI+EAI ++ + R Sbjct: 1 MKLKSLEISGFKSFADKTVIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60 Query: 61 YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 AD+ G S + V +D +K E + R R L QIN V R Sbjct: 61 MADIIFGGTSKRGALNRSEVSMTFDNSDHYVKSEFNEIRITRRLYRSGESVYQINGVDSR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162 + ++++ + L I S +RR ++ + +++ Sbjct: 121 -LRDIHELFMDTGLGRESFSIISQGRVEGIFNAKPEDRRGIIEEVAGVYK--YKQNKERA 177 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSSLIMEYVQKEN 220 ++ + + L +AE + +A+ E N L + +E Sbjct: 178 QKELSQTSDNLARVADIIYEIKGRIQPLAEQSAQATDYLAQKERFNTLDKTRLALTHREL 237 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 IK ++T + + + KL ++ + Sbjct: 238 EIQIKTTITEVEVHDKRVNQTKVGLDKLNKLLSEKRQER 276 >gi|20090982|ref|NP_617057.1| hypothetical protein MA2139 [Methanosarcina acetivorans C2A] gi|19916068|gb|AAM05537.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans C2A] Length = 689 Score = 66.1 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 68/393 (17%), Positives = 137/393 (34%), Gaps = 62/393 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-PGRGFRRASY-- 61 + I + + FR + + F +F+G+N GKT +L+A+ + + + Sbjct: 12 MYISKIRMQNFRCFCDTSVEFYEGLNVFIGENNSGKTTVLKALQLIFDNSVSKKLSIDDF 71 Query: 62 -ADVTRIGSPSFFSTFARVEGMEG--------------------LADISIKLETRD-DRS 99 ++ P + ++ E A ++ K + D Sbjct: 72 YKGISSFDEPPQITITISIQETESEKIEDKAVVATWLTKLNSPCEATLTYKYFLPETDLE 131 Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159 ++N+ ++ E + R +L + RI++G + + R + D + Sbjct: 132 EYKKELNERDQSLISEWDILER--FLQRYVSRIYAGNPISKNRVESEYLEKFDCTFLDAL 189 Query: 160 IDF-ERLMRGRNRLLTE------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 + + G+N LL Y S +E + + K E + L Sbjct: 190 RNVENSIYNGKNSLLKNVLNYFLDYNLKSSIKKLEQDLEDTDSK--AKLDECLTKLECCR 247 Query: 213 MEY--VQKENFPHIKLSLTGFLDGKFDQSFCAL---KEEYAKKLFDGRKMDSMSRRTLIG 267 E+ K+ I+ L +S A K + +L + D +S LI Sbjct: 248 NEFRGQSKDLLDSIRGRLDTGHILSLVESTGASVCGKPDIEGELSES---DILSTLKLII 304 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFA----PILLLDEI 322 S + + + + G ++ + + L++ +I S+ G PILL++E Sbjct: 305 KSNSGMQIPIFNNGL-------GYNNLIYISLVLSNLEIITSDHFGENAKIFPILLIEEP 357 Query: 323 SAHLDEDKRNALFRIVTD------IGSQIFMTG 349 AHL + R + + I QIF+T Sbjct: 358 EAHLHPALQYNFLRFLKEEIKNKNISRQIFVTT 390 >gi|86607139|ref|YP_475902.1| RecF/RecN/SMC domain-containing protein [Synechococcus sp. JA-3-3Ab] gi|86555681|gb|ABD00639.1| RecF/RecN/SMC N terminal domain protein [Synechococcus sp. JA-3-3Ab] Length = 1198 Score = 66.1 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + F+++ F+ G+NG GKT+ILEAI+++ + + ++ Sbjct: 1 MRILSLALQNFKSHEDAFFEFEPGINAICGENGAGKTSILEAIAWVLF--DYCPYNQEEL 58 Query: 65 TRIGSPSFFSTFARVEGMEGL 85 R G+ +T + + Sbjct: 59 IRTGASDAVATVQFISQWDQR 79 >gi|332666578|ref|YP_004449366.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335392|gb|AEE52493.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 706 Score = 66.1 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43 + I L++ FRN+ + F +G+NG GKTN+ Sbjct: 1 MHITSLSLRNFRNFKKAKFHFQKGINTLIGENGSGKTNV 39 >gi|323476197|gb|ADX81435.1| Rad50 recombination repair enzyme like protein [Sulfolobus islandicus HVE10/4] Length = 864 Score = 66.1 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + ++ F ++ + F + + VG NG GK++I++ I S R R + ++ Sbjct: 1 MRIDKITLTNFLSHEQSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS + I I + R R ++ V R ++ + Sbjct: 60 IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116 Query: 125 LVPSMDRI 132 + + Sbjct: 117 GIDKDIAL 124 Score = 41.8 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 +M+ M + + G + +I + I S GE+ + + + LA A+ + + T Sbjct: 739 KNVEMEIMPKTSRGKGTGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357 +LDE + HLD+ ++ L I+ QI + D+ V + Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844 >gi|260438583|ref|ZP_05792399.1| putative ATP binding protein [Butyrivibrio crossotus DSM 2876] gi|292809174|gb|EFF68379.1| putative ATP binding protein [Butyrivibrio crossotus DSM 2876] Length = 438 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 27/45 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 +K+K + I +R + + FD T+ VG NG GKT IL+A++ Sbjct: 1 MKLKNIKIENYRCFKRADIDFDENITLIVGKNGAGKTAILDAVAV 45 >gi|229918602|ref|YP_002887248.1| chromosome segregation protein SMC [Exiguobacterium sp. AT1b] gi|229470031|gb|ACQ71803.1| chromosome segregation protein SMC [Exiguobacterium sp. AT1b] Length = 1185 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 35/221 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + ++ F+++ + L F T VG NG GK+NI +A+ ++ + R A Sbjct: 1 MHLKRIELAGFKSFAKRIELDFRPGVTAVVGPNGSGKSNISDAVRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS + ++ + + + + R R +N R Sbjct: 61 MEDVIFAGSEGENHRNVAEVTLVLDNRDEQLRLPYEEVSVTRRVTRSGDSDYFMNKKPCR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D ++ + + +++ SG ERR ++ ++ + Sbjct: 121 LKDVIDLFMDTGLSRDAFAIIGQGRVEQVISGKPEERRAVIEE---------AAGVLKY- 170 Query: 164 RLMRGRNRLLTEGYFDSSW-CSSIEAQMAELGVKINIARVE 203 R R + D+ S ++ + EL ++ R + Sbjct: 171 ---RQRKKQAERKLQDTELNLSRVDDILFELADRVEPLREQ 208 >gi|168486567|ref|ZP_02711075.1| chromosome segregation protein SMC [Streptococcus pneumoniae CDC1087-00] gi|183570412|gb|EDT90940.1| chromosome segregation protein SMC [Streptococcus pneumoniae CDC1087-00] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|148985142|ref|ZP_01818381.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP3-BS71] gi|147922587|gb|EDK73705.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP3-BS71] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDIFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|296109493|ref|YP_003616442.1| SMC domain protein [Methanocaldococcus infernus ME] gi|295434307|gb|ADG13478.1| SMC domain protein [Methanocaldococcus infernus ME] Length = 873 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI+ L I FR++ S L F + VG NG GK++ILEAI R D Sbjct: 1 MKIEELKIINFRSHKSSVLEFTDGINLIVGPNGSGKSSILEAILVGLYWDKPRN-KIKDF 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 R G A +E L + S KL R+ L+ +D + D Sbjct: 60 HRDGKK------AEIEMKLKLNNRSCKLLRSFPRNTAYLRYSDSYLNERD 103 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 86/226 (38%), Gaps = 30/226 (13%) Query: 151 IDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI--NIARVEMI 205 ++ + ++ R + N L E D ++++ +I +E + Sbjct: 659 LENKFLELEREYSRKDEEFKQLNSQLEEIIKDLDNLKRDLDEISKYREEIKSLEKALEFV 718 Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 L + E+ K L K + + EE ++ + G + Sbjct: 719 EELRKKVKEFKNK---------LKCHAFQKVSEIASEIFEELTEEKYSGVA--IKEKGNK 767 Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 + + + Y K + S GE+ + + LA + ++ G P+L++DE + + Sbjct: 768 LIVN-----IIYEGKERNLNFLSGGEKVALGLAFRLALSLYLA---GNIPLLIMDEPTPY 819 Query: 326 LDEDKRNALFRIVT---DIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 LDE++R L I+ Q+ + D+ + D+ + + +R+S Sbjct: 820 LDEERRRRLVDIIERYLKRIPQVIIVSHDEELKDAAD---RVIRVS 862 >gi|227548996|ref|ZP_03979045.1| possible chromosome segregation protein Smc [Corynebacterium lipophiloflavum DSM 44291] gi|227078947|gb|EEI16910.1| possible chromosome segregation protein Smc [Corynebacterium lipophiloflavum DSM 44291] Length = 636 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 76/227 (33%), Gaps = 31/227 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS + F+ VG NG GK+N+++A++++ + R Sbjct: 1 MHLKSLTLKGFKSFASATTMKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGVKNLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ + + I R R ++N R Sbjct: 61 MEDVIFAGAGERKPLGRAEVTLTFDNTDKRLPIDYTDVAITRRMFRDGASEYEVNGSKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I + I ERR F++ + R E Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLAEILESRPEERRAFIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKI-NIARVEMINA 207 + R + D + Q+A L + R + A Sbjct: 176 KA--QRKLTGMQANLDRLTDLTEELGKQLAPLARQAETAQRAASVQA 220 >gi|325295627|ref|YP_004282141.1| chromosome segregation protein SMC [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066075|gb|ADY74082.1| chromosome segregation protein SMC [Desulfurobacterium thermolithotrophum DSM 11699] Length = 1168 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 22/162 (13%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + IK L + F+++A + F VG NG GK+NI++A+ ++ + +G R ++ Sbjct: 1 MFIKSLKLKGFKSFADETEIRFSKGINCIVGPNGCGKSNIVDALKWIVGDTSIKGMRASN 60 Query: 61 YADVTRIGSP-------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRV 112 DV GS + S + + ++ ++L+ R + IN+ +R Sbjct: 61 IKDVIFKGSEGRRAARSAEVSITLIKDDLFTFSESEVELKRRIKSTGDSEFLINNRKVR- 119 Query: 113 VDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLD 145 + ++ + L DR+ ERR +D Sbjct: 120 LKDIQEFFASIGLGNRDYAFFEQGQIDRVLKMKPQERRLLID 161 >gi|301800167|emb|CBW32772.1| putative chromosome partition protein [Streptococcus pneumoniae OXC141] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|257051458|ref|YP_003129291.1| chromosome segregation protein [Halorhabdus utahensis DSM 12940] gi|256690221|gb|ACV10558.1| SMC domain protein [Halorhabdus utahensis DSM 12940] Length = 890 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 57/307 (18%), Positives = 118/307 (38%), Gaps = 41/307 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ + + + F+ YA L + T+F G NG GK+++LEA F G + ++ Sbjct: 1 MRFERVRLEHFKCYADADLRLERGVTVFHGVNGSGKSSLLEACFFALYGARALDRTLDEL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLA---------DISIKLETRDDRSVRCLQINDVVIRVVDE 115 IG+ G E D + +E D S ++ V V Sbjct: 61 VTIGAEEATVELWFAHGGESYHIKRRVRVRDDRATTVECVLDESDGVVEGARDVRERVAS 120 Query: 116 LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFE----R 164 L + +++ + R + + ER+ +D ++ +R+R D R Sbjct: 121 LLRMDHEAFVNCAYVRQGEVNKLINATPGERQDMIDDLLQLGRLEDYRKRASDARVGVGR 180 Query: 165 LMRGRNRLL----------------TEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 ++ G+ L + S +++ ++ + AR E ++A Sbjct: 181 VLEGKRESLSQLESQIEAKVEKELHEQLNAAESELATVREELERYDEQRETAR-ETLDAA 239 Query: 209 SSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLI 266 +S++ EY Q +E I+ + + ++ +EE A ++ D R + + +S R Sbjct: 240 NSILEEYEQRREELDEIESEIAELTETI--EATEREREELADEISDRRDRREEISDRIES 297 Query: 267 GPHRSDL 273 G ++L Sbjct: 298 GLDTAEL 304 >gi|311246142|ref|XP_003122098.1| PREDICTED: structural maintenance of chromosomes protein 2-like [Sus scrofa] Length = 570 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 99/274 (36%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ H Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSH 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + ++S LKE K L + Sbjct: 233 LYIAYQFLLAEDTKERSAEELKEMQDKILKLQEE 266 >gi|144898157|emb|CAM75021.1| Recombinational DNA repair ATPase (RecF [Magnetospirillum gryphiswaldense MSR-1] Length = 71 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 36/53 (67%) Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 DE+ AHLDE +R ALF + + +Q +MTGTD+S+F L + A+F R+++ Sbjct: 15 DEVVAHLDETRRLALFDELAGLNAQSWMTGTDESMFAGLGDRAQFFRVADASV 67 >gi|332074857|gb|EGI85329.1| chromosome segregation protein SMC [Streptococcus pneumoniae GA41301] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|225854712|ref|YP_002736224.1| chromosome segregation protein SMC [Streptococcus pneumoniae JJA] gi|225722373|gb|ACO18226.1| chromosome segregation protein SMC [Streptococcus pneumoniae JJA] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|182684026|ref|YP_001835773.1| hypothetical protein SPCG_1056 [Streptococcus pneumoniae CGSP14] gi|303254258|ref|ZP_07340367.1| hypothetical protein CGSSpBS455_02192 [Streptococcus pneumoniae BS455] gi|303258882|ref|ZP_07344861.1| hypothetical protein CGSSp9vBS293_10438 [Streptococcus pneumoniae SP-BS293] gi|303261565|ref|ZP_07347512.1| hypothetical protein CGSSp14BS292_04130 [Streptococcus pneumoniae SP14-BS292] gi|303264236|ref|ZP_07350156.1| hypothetical protein CGSSpBS397_09985 [Streptococcus pneumoniae BS397] gi|303266133|ref|ZP_07352026.1| hypothetical protein CGSSpBS457_05117 [Streptococcus pneumoniae BS457] gi|303268140|ref|ZP_07353940.1| hypothetical protein CGSSpBS458_01192 [Streptococcus pneumoniae BS458] gi|182629360|gb|ACB90308.1| hypothetical protein SPCG_1056 [Streptococcus pneumoniae CGSP14] gi|301801898|emb|CBW34622.1| putative chromosome partition protein [Streptococcus pneumoniae INV200] gi|302598752|gb|EFL65789.1| hypothetical protein CGSSpBS455_02192 [Streptococcus pneumoniae BS455] gi|302637145|gb|EFL67633.1| hypothetical protein CGSSp14BS292_04130 [Streptococcus pneumoniae SP14-BS292] gi|302639825|gb|EFL70281.1| hypothetical protein CGSSpBS293_10438 [Streptococcus pneumoniae SP-BS293] gi|302642357|gb|EFL72704.1| hypothetical protein CGSSpBS458_01192 [Streptococcus pneumoniae BS458] gi|302644303|gb|EFL74557.1| hypothetical protein CGSSpBS457_05117 [Streptococcus pneumoniae BS457] gi|302646048|gb|EFL76275.1| hypothetical protein CGSSpBS397_09985 [Streptococcus pneumoniae BS397] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|15903169|ref|NP_358719.1| chromosome condensation and segregation SMC protein [Streptococcus pneumoniae R6] gi|116515906|ref|YP_816575.1| chromosome segregation protein SMC [Streptococcus pneumoniae D39] gi|15458753|gb|AAK99929.1| chromosome condensation and segregation SMC protein [Streptococcus pneumoniae R6] gi|116076482|gb|ABJ54202.1| chromosome segregation protein SMC [Streptococcus pneumoniae D39] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 107/283 (37%), Gaps = 37/283 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR----------VEMINALSSLIM 213 ++ L ++ Q+ L + AR V ++ L + I Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLEKQAENARKFLDLEGQRKVIYLDVLVAQIK 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 E + +L+ L + Q L+EE + L R+ Sbjct: 236 ENKAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|51892593|ref|YP_075284.1| putative chromosome segregation SMC protein [Symbiobacterium thermophilum IAM 14863] gi|51856282|dbj|BAD40440.1| putative chromosome segregation SMC protein [Symbiobacterium thermophilum IAM 14863] Length = 1193 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 101/306 (33%), Gaps = 51/306 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L I F+++A L F T VG NG GK+N+ +AI ++ R R S Sbjct: 1 MYLKRLEILGFKSFAEKTELEFTPGITAVVGPNGSGKSNVSDAIRWVLGEQSARALRGGS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 ADV GS F ++ +G + + + R DRS IN V R Sbjct: 61 MADVIFAGSDGKRAMGFAEVSLVLDNSDGALPLDFTEVMITRRVDRSGEGEYFINQVPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D I S +RR + R++ R + + Sbjct: 121 LKDVQELFMDTGIGKENYSIIGQGRIDEILSSKPEDRRALFEEAAG--ISRYKARKREAQ 178 Query: 164 RLMRG-----------------RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI- 205 R + L + ++ ++ ++ L V + +++ + Sbjct: 179 RRLEETEQNLLRITDIIGELTSNMDALAQQAEKATLYQELDGELTRLDVGLLARQLQTVV 238 Query: 206 ----------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255 L+ + Q+ L ++ L D+ L + Sbjct: 239 SRLEEQRAVGAELAQKAADIEQRMQTAEEALEVSRQLVAALDEELNVLSVRLTEAASRQE 298 Query: 256 KMDSMS 261 + + Sbjct: 299 RAEGRL 304 Score = 41.0 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 35/190 (18%) Query: 180 SSWCSSIEAQMAELG---------VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 + +++ Q+ ELG + R++ + A + + E K + L Sbjct: 977 RARIAALREQIRELGPVNLQAIEDYRAARERLDFLQAQEADLQE--AKASLYRAISELDR 1034 Query: 231 FLDGKFDQSFCALKEEYAK---KLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-------- 279 + F +SF +++ + + +LF+G K D DL+ + Sbjct: 1035 RIKSHFYESFQEIRQAFQQVFTELFEGGKADLRL------VDEDDLLETGIEIIAQPPGK 1088 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 KA ++ S GE+ + + + A R+ +P ++LDE+ A LDE R + Sbjct: 1089 KAQPLSLLSGGERAMTAIALLFALLRV-----RPSPFVVLDEVEAALDEANVERFSRYLK 1143 Query: 340 DIG--SQIFM 347 Q Sbjct: 1144 HASEHCQFIC 1153 >gi|332203095|gb|EGJ17163.1| chromosome segregation protein SMC [Streptococcus pneumoniae GA47901] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|288929747|ref|ZP_06423590.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str. F0108] gi|288328848|gb|EFC67436.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str. F0108] Length = 681 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 125/397 (31%), Gaps = 75/397 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFR-RASY- 61 + IK +NI FR++ + F + +G N GK+N+L A+ LS G R S Sbjct: 1 MYIKEINILNFRSFKEALIPFHEGVNVIIGHNNTGKSNLLRAMGLVLSYSNGHRLGTSDL 60 Query: 62 ------ADVTRIG-----------------SPSFFSTFARVE-----GMEGLADISIKLE 93 A++ R + + FA + E KL+ Sbjct: 61 FYETDVAELQRQSPRIQITLVLRRSADENLDSADMALFANMMTDPALSEEAELRYEFKLD 120 Query: 94 TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153 +++ + N + + + ++ + I S SG + ++ + ID Sbjct: 121 DSQEKNYKADVANAITAKEIWKIIEQDYIRLYKSS----RSGGNQAAGININETLGQIDF 176 Query: 154 RHRRRMID--------FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 + + D + L+R + + + E+ ++ R + + Sbjct: 177 QFLDAIRDVSHDLYAGYNPLLRDVLNFFIDYSVKNDVTKTEN----EIKEQLKALRDDFV 232 Query: 206 NA---LSSLIMEYVQKENFPHIKLSLT-----GFLDGKFDQSFCALKEEYAKKLFDGRKM 257 L + + +Q +K +L + FD + + ++F + Sbjct: 233 QQSRPLMQTLQDRLQDGKNVFLKYALDTGATFNGAEPDFDGTVTENEMFSVLRMFIKYAV 292 Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317 T G ++LI A A GS + L Sbjct: 293 GIEVPATYNGLGYNNLIYMSLLLAKMQADGS---------------IAYMKRNAKVLSFL 337 Query: 318 LLDEISAHLDEDKRNALFRIVTDIGS-----QIFMTG 349 ++E AHL + + + D QIFMT Sbjct: 338 AVEECEAHLHPAMQYKFLKFLQDNNLNGHVRQIFMTS 374 >gi|282163298|ref|YP_003355683.1| chromosome segregation protein SMC [Methanocella paludicola SANAE] gi|282155612|dbj|BAI60700.1| chromosome segregation protein SMC [Methanocella paludicola SANAE] Length = 1173 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 102/276 (36%), Gaps = 40/276 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + ++ F+++ ++ F T G NG GK+N++++I F LS R R Sbjct: 1 MHIKEIELNNFKSFGRKAKIPFFDDFTTISGPNGSGKSNVIDSILFCLGLSNSRSMRAEK 60 Query: 61 YADVT------RIGSPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVI 110 D+ GS F + + I+ ++++ D N+ + Sbjct: 61 LTDLIYSVNGKSPGSADVTIRFDNTDREMPIDQDEVTITRRIKSSDSGYYSYYYFNEKPV 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 + E+++HL + + P + + R + R Sbjct: 121 -SLSEIHEHLLKAKISPDGYNVVMQGDVTRIIEVSNF--------------------ERR 159 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSL 228 +++ E + + + ++EL I R++ + + S + + K+ H L Sbjct: 160 KMIDEIAGTAEFDEKTDKALSELD--IVRDRIDRVAIIISEVEARLAQLKDERDHALLYQ 217 Query: 229 TGFLDGKFDQSFCALKE-EYAKKLFDGRKMDSMSRR 263 + + ++ + L E + A++L D D + Sbjct: 218 SYRDEKVKNEGYLVLSELKEAQQLLDSLLEDIRDKT 253 >gi|256810817|ref|YP_003128186.1| chromosome segregation protein SMC [Methanocaldococcus fervens AG86] gi|256794017|gb|ACV24686.1| chromosome segregation protein SMC [Methanocaldococcus fervens AG86] Length = 1169 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 + ++ + + F+++ L L T VG NG GK+NI++AI F+ + + R + + Sbjct: 2 VALERIELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKTSAKKLRASRF 61 Query: 62 ADVTRIGS---PSFFSTFARVEGMEGLADI---SIKLETR---------------DDRSV 100 + + + F + + +I + + R D+ Sbjct: 62 SGLITYHNGKRADFAEVYLYFSNDNNVFNINANKVGILRRIKKNGETDYYLIWKEGDKEK 121 Query: 101 RCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 R +I + L + +I + +ERR+ +D Sbjct: 122 RKKMSKHEIIDLFRRLGLLGDNVISQGDLLKIINISPIERRKIID 166 >gi|221231941|ref|YP_002511093.1| chromosome partition protein [Streptococcus pneumoniae ATCC 700669] gi|220674401|emb|CAR68951.1| putative chromosome partition protein [Streptococcus pneumoniae ATCC 700669] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 109/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I + Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKDN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELDSTEEELAQVQELLTSYYQKREKLEEE-NQTLKKQRQ 277 >gi|149002615|ref|ZP_01827547.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP14-BS69] gi|237649947|ref|ZP_04524199.1| hypothetical protein SpneC1_04341 [Streptococcus pneumoniae CCRI 1974] gi|237822504|ref|ZP_04598349.1| hypothetical protein SpneC19_09414 [Streptococcus pneumoniae CCRI 1974M2] gi|147759226|gb|EDK66219.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP14-BS69] gi|332200694|gb|EGJ14766.1| chromosome segregation protein SMC [Streptococcus pneumoniae GA41317] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|20808433|ref|NP_623604.1| ATPase involved in DNA repair [Thermoanaerobacter tengcongensis MB4] gi|20517049|gb|AAM25208.1| ATPase involved in DNA repair [Thermoanaerobacter tengcongensis MB4] Length = 549 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 7/119 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR--ASYA 62 + IK + + F+++ + + F+ ++T+ GDNG GKT+I EAI++ G Sbjct: 1 MIIKSITLKNFKSHKNTIINFNDKNTVIYGDNGTGKTSIGEAIAWCLTGANLFGTENVTN 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + IG S +E +I+ ++ + IN V +D + ++ Sbjct: 61 KLVTIGKNE-MSVTLVIEKDGKEYEIT----RSKKKNEIEITINGVKSTQIDLYTQFVQ 114 >gi|168485010|ref|ZP_02709948.1| chromosome segregation protein SMC [Streptococcus pneumoniae CDC1873-00] gi|172041873|gb|EDT49919.1| chromosome segregation protein SMC [Streptococcus pneumoniae CDC1873-00] gi|332201710|gb|EGJ15780.1| chromosome segregation protein SMC [Streptococcus pneumoniae GA47368] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|149019238|ref|ZP_01834600.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP23-BS72] gi|147931108|gb|EDK82087.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP23-BS72] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|225859041|ref|YP_002740551.1| chromosome segregation protein SMC [Streptococcus pneumoniae 70585] gi|225721362|gb|ACO17216.1| chromosome segregation protein SMC [Streptococcus pneumoniae 70585] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRSIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|261350818|ref|ZP_05976235.1| putative RecF/RecN/SMC N domain protein [Methanobrevibacter smithii DSM 2374] gi|288860436|gb|EFC92734.1| putative RecF/RecN/SMC N domain protein [Methanobrevibacter smithii DSM 2374] Length = 917 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + L ++ F++Y + F T+ VG+NG GK+ ILEAISF + + D+ Sbjct: 1 MIFTKLTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF-ALFKQHTAKKIDDL 59 Query: 65 TRIGSPS 71 R GS Sbjct: 60 VRNGSDE 66 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 81/211 (38%), Gaps = 24/211 (11%) Query: 182 WCSSIEAQMAELGVKINI---ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + E + E +++ E+I ++ L + + F + T ++D Sbjct: 709 FYEVYERRYDEFAGELSEIKGQAKELIANVNVLAEKILTNYKFQQEYKNTTDYIDLLNHI 768 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTL-----IGPHRSDLI--------VDYCDKAITIA 285 K K+L R + + T + SDL V + +++ Sbjct: 769 RTLYSKNGIQKEL-RNRSRPVIQKYTKDFFDEFNFNYSDLTLDEDYEVTVFGPEGEASMS 827 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343 S GE+ + + + L + ++ G +LLDE + HLD +R+ L ++ D+ Sbjct: 828 MVSGGEKIAIALALRLGITQAMAK--GDLDTILLDEPTIHLDSFRRHELINLLKDMTVLP 885 Query: 344 QIFMTGTDKSVFDSLNETAKFMRISNHQALC 374 Q+ + T +S ++ + +++ + + Sbjct: 886 QMII-VTHESQLENAADN--LVKVEKNNGIS 913 >gi|148642180|ref|YP_001272693.1| purine NTPase involved in DNA repair, Rad50 [Methanobrevibacter smithii ATCC 35061] gi|148551197|gb|ABQ86325.1| purine NTPase involved in DNA repair, Rad50 [Methanobrevibacter smithii ATCC 35061] Length = 917 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + L ++ F++Y + F T+ VG+NG GK+ ILEAISF + + D+ Sbjct: 1 MIFTKLTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF-ALFKQHTAKKIDDL 59 Query: 65 TRIGSPS 71 R GS Sbjct: 60 VRNGSDE 66 Score = 44.9 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 80/211 (37%), Gaps = 24/211 (11%) Query: 182 WCSSIEAQMAELGVKINI---ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + E + E +++ E+I ++ L + + F + T ++D Sbjct: 709 FYEVYERRYDEFAGELSEIKGQAKELIANVNVLAEKILTNYKFQQEYKNTTDYIDLLNHI 768 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTL-----IGPHRSDLI--------VDYCDKAITIA 285 K K+L R + + T + SDL V + +++ Sbjct: 769 RTLYSKNGIQKEL-RNRSRPVIQKYTKDFFDEFNFNYSDLTLDEDYEVTVFGPEGEASMS 827 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343 S GE+ + + + L + + G +LLDE + HLD +R+ L ++ D+ Sbjct: 828 MVSGGEKIAIALALRLGITK--AKAKGDLETILLDEPTIHLDSFRRHELINLLKDMTVLP 885 Query: 344 QIFMTGTDKSVFDSLNETAKFMRISNHQALC 374 Q+ + T +S ++ + +++ + + Sbjct: 886 QMII-VTHESQLENAADN--LVKVEKNNGIS 913 >gi|306825116|ref|ZP_07458458.1| cell division protein Smc [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432552|gb|EFM35526.1| cell division protein Smc [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1179 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 106/283 (37%), Gaps = 37/283 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A IK+E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVIVTLDNEDGFIKDAGQEIKVERHIYRSGDSEYRIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR----------VEMINALSSLIM 213 ++ L ++ Q+ L + AR ++ L + I Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLSKQAENARKFLDLDGQRKAIYLDVLVAQIK 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 E + +LS L + Q L+EE + L R+ Sbjct: 236 ENKAELELTEEELSQVQELLTSYYQKREELEEE-NQSLKKKRQ 277 >gi|322391778|ref|ZP_08065243.1| SMC structural maintenance of chromosomes partitioning protein [Streptococcus peroris ATCC 700780] gi|321145258|gb|EFX40654.1| SMC structural maintenance of chromosomes partitioning protein [Streptococcus peroris ATCC 700780] Length = 1178 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 106/283 (37%), Gaps = 37/283 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKNLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A IK+E R+ +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNQDGFIKDAGQEIKVERHIYRTGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----------EMINALSSLIM 213 ++ L ++ Q+ L + AR ++ L + I Sbjct: 179 SKLQQTQDNLDRL---EDIIHELDNQIKPLEKQATTARKFIELDGQRKGIYLDVLVAQIQ 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + + +L+ L + Q L+EE + L R+ Sbjct: 236 ANKDELDLTEEELNQVQELLTSYYQKREELEEE-NQTLKKKRQ 277 >gi|86609420|ref|YP_478182.1| RecF/RecN/SMC domain-containing protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557962|gb|ABD02919.1| RecF/RecN/SMC N terminal domain protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1205 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + F+++ F+ G+NG GKT+ILEAI+++ + S ++ Sbjct: 8 MRILSLALQNFKSHEDAVFTFEPGINAICGENGAGKTSILEAIAWVLF--DYCPYSQEEI 65 Query: 65 TRIGSPSFFSTFARVEGMEGL 85 R G+ T + + Sbjct: 66 IRSGANDAVVTVQFISQWDQR 86 >gi|166364477|ref|YP_001656750.1| hypothetical protein MAE_17360 [Microcystis aeruginosa NIES-843] gi|166086850|dbj|BAG01558.1| unknown protein [Microcystis aeruginosa NIES-843] Length = 662 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 26/45 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 +KI + I F+++ + + + +F G N GKTN+LEAI+ Sbjct: 1 MKISKIQIKNFKSFQDVTVDLEPDFNVFTGVNNSGKTNLLEAIAL 45 >gi|315640112|ref|ZP_07895234.1| cell division protein Smc [Enterococcus italicus DSM 15952] gi|315484089|gb|EFU74563.1| cell division protein Smc [Enterococcus italicus DSM 15952] Length = 1195 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 104/287 (36%), Gaps = 43/287 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + ++ F+++A+ + F+ Q T VG NG GK+NI EAI ++ S + R Sbjct: 1 MYLKRIEVAGFKSFANRTTIQFEDQVTAIVGPNGSGKSNITEAIRWVLGESSAKSLRGGR 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS S ++ + I + + R R+ +N R Sbjct: 61 MPDIIFAGSESRKPLNIAEVTIVLDNSDNYLPIEYTEVSVTRRLRRTGESDFFLNKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IFS +RR + ++ ++ Sbjct: 121 LRDIQELFMDSGLGKESFSIISQGKVEAIFSSKPEDRRGVFEE---------AAGVLKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVK--INIARVEMINALSSLIMEYV- 216 + L E + +E Q+A L + A V++ L+ + + Y Sbjct: 172 TRKKQAEAKLNETQDNLHRVQDIVYELEEQLAPLREQKETAQAYVKLKEELTGVDVAYTV 231 Query: 217 -----QKENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKM 257 K++ I+L L + D Q KEE + R+ Sbjct: 232 QEVVKAKQSSDEIQLRLQDAAEKLEDLQGAILQKEELLLRARSEREQ 278 >gi|299856726|pdb|3KTA|A Chain A, Structural Basis For Adenylate Kinase Activity In Abc Atpases gi|299856728|pdb|3KTA|C Chain C, Structural Basis For Adenylate Kinase Activity In Abc Atpases Length = 182 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 24/164 (14%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASY 61 I+ L + F++Y + + F T VG NG GK+NI +AI F+ G R + Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAXRASRI 63 Query: 62 ADVTRIGS-PSFFSTFARVEGMEGLADISIKL---ETRDDRSVR-----CLQINDVVIRV 112 +D+ GS + +A V D + E R V +N Sbjct: 64 SDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRA-T 122 Query: 113 VDELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRM 147 E+ L + + P I +ERR +D + Sbjct: 123 RSEILDILTAAXISPDGYNIVLQGDITKFIKXSPLERRLLIDDI 166 >gi|253577470|ref|ZP_04854785.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843170|gb|EES71203.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 699 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 22/46 (47%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 + I L I FRN+ VF +G NG GKTN L AI + Sbjct: 1 MHISSLKIRNFRNFQKANFVFKEGVNTIIGANGSGKTNALFAIRLI 46 >gi|37522891|ref|NP_926268.1| chromosome segregation SMC protein [Gloeobacter violaceus PCC 7421] gi|35213893|dbj|BAC91263.1| glr3322 [Gloeobacter violaceus PCC 7421] Length = 1165 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 88/216 (40%), Gaps = 26/216 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + +K L I F+++ R+ T+ G NG GK+NI++A+ F LS RG R Sbjct: 1 MHLKCLEIERFKSFGPYTRIPLLEGFTVVSGPNGSGKSNIIDALLFALGLSTSRGMRAEK 60 Query: 61 YADVTRIGS---PSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDVVIRVVD- 114 +D+ G+ + ++ G ++++ +L+ S Q+N + D Sbjct: 61 LSDLIHQGAAKGEVAVTVTFALDAAAGGGELTVCRRLKVNGPNSTSSYQLNGSPCTLTDL 120 Query: 115 --ELNKHLRI-----SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 EL +H L + I + + ERR +D + + +F+R + Sbjct: 121 HEELARHHIYPEGYNVVLQGDVTGIIAMPARERREIIDELAG---------VAEFDRKIE 171 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 R L E S ++ +++ E ++ R + Sbjct: 172 AARRELGEVEVRSDRIQAVVSELLEQMERLQKERAK 207 >gi|300779091|ref|ZP_07088949.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300504601|gb|EFK35741.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 703 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 24/46 (52%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 + I L+I FRN+ S F +G+NG GKTN+ A+ L Sbjct: 1 MYISGLSIRNFRNFKSAHFKFTEGINTIIGENGSGKTNLFYALRIL 46 >gi|163814045|ref|ZP_02205437.1| hypothetical protein COPEUT_00198 [Coprococcus eutactus ATCC 27759] gi|158450494|gb|EDP27489.1| hypothetical protein COPEUT_00198 [Coprococcus eutactus ATCC 27759] Length = 1185 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 94/277 (33%), Gaps = 38/277 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + ++ F+++A+ + F+ T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVNGFKSFANKIVFKFNHGITCIVGPNGSGKSNVADAVRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGS-----PSFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ + I T R R IN V R Sbjct: 61 MEDVIFSGTQLRKPQGSAYVAITLDNSDHSLPIDYGEVTVARRVYRSGESEYLINGTVSR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + +++I +G ERR D + ++ E Sbjct: 121 LKDVYSLFFDTGIGKEGYSIIGQGQIEKILNGKPEERRELFDEAAGIVK--FKKNKAATE 178 Query: 164 RLMR-GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----------INALSSLI 212 + + R+ L +E Q+ L + + AR + +NA I Sbjct: 179 KALEAERDNLSRVN----DILKELEKQVGPLKEQSDTARKYLAFKSELKNLDVNAFLLEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + +L + + + KEEY + Sbjct: 235 EKLRADLERDQARLEIVNDDIEENRNLYEQTKEEYEQ 271 >gi|222444642|ref|ZP_03607157.1| hypothetical protein METSMIALI_00254 [Methanobrevibacter smithii DSM 2375] gi|222434207|gb|EEE41372.1| hypothetical protein METSMIALI_00254 [Methanobrevibacter smithii DSM 2375] Length = 917 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + L ++ F++Y + F T+ VG+NG GK+ ILEAISF + + D+ Sbjct: 1 MIFTKLTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF-ALFKQHTAKKIDDL 59 Query: 65 TRIGSPS 71 R GS Sbjct: 60 VRNGSDE 66 Score = 44.5 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 81/211 (38%), Gaps = 24/211 (11%) Query: 182 WCSSIEAQMAELGVKINI---ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + E + E +++ E+I ++ L + + F + T ++D Sbjct: 709 FYEVYERRYDEFAGELSEIKGQAKELIANVNVLAEKILTNYKFQQEYKNTTDYIDLLNHI 768 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTL-----IGPHRSDLI--------VDYCDKAITIA 285 K K+L R + + T + SDL V + +++ Sbjct: 769 RTLYSKNGIQKEL-RNRSRPKIQKHTKDFFDEFNFNYSDLTLDEDYEVTVFGPEGEASMS 827 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343 S GE+ + + + L + ++ G +LLDE + HLD +R+ L ++ D+ Sbjct: 828 MVSGGEKIAIALALRLGITQAMAK--GDLDTILLDEPTIHLDSFRRHELINLLKDMTVLP 885 Query: 344 QIFMTGTDKSVFDSLNETAKFMRISNHQALC 374 Q+ + T +S ++ + +++ + + Sbjct: 886 QMII-VTHESQLENAADN--LVKVEKNNGIS 913 >gi|114566314|ref|YP_753468.1| chromosome segregation SMC protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337249|gb|ABI68097.1| condensin subunit Smc [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1191 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 66/361 (18%), Positives = 135/361 (37%), Gaps = 51/361 (14%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPG--RGFRRAS 60 + +K L+I F+++A + L + I VG NG GK+NI++AI L R R Sbjct: 1 MYLKRLDIKGFKSFADNTELQLNPGLNIVVGPNGCGKSNIVDAIRWVLGETSIRQLRGQK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS + A VE + +D S+ L+ + R + +N +R Sbjct: 61 NEDVIFNGSDKKKALGMAFVELVIDNSDHSLPLDFSEITLGRKVHRSGESEFYLNKSRVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF- 162 + D + K ++ + +G +++RR L+ I +R++ + Sbjct: 121 LKDISDLLSGSGVGKKGYAIISQGELEEVLNGQALDRRLMLEEAAGVIK--YRQQRDEVK 178 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 +R++ N LL G +E +++ R E+ + Sbjct: 179 KRILNSSNDLLRLG-------DILEE--------LDLRRQELFRKAEKARLYMALNSECQ 223 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KA 281 + S+ GF + ++ + + +K + + ++ + + L + Sbjct: 224 ELDKSVLGFELARTEKDWQQKSRDLIQK-----QNEIQAQAGQVALLEAKLREEEEGLAR 278 Query: 282 ITIAHGSTGEQKVVL---VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 ++ G GEQ+ +L + + RL + D ++ DE K+ L + Sbjct: 279 QQLSLGELGEQRHLLESRLNLLQGEIRLGEERIKNNNKRIDDAVA---DEKKQLILLDNI 335 Query: 339 T 339 Sbjct: 336 Q 336 >gi|284161186|ref|YP_003399809.1| SMC domain protein [Archaeoglobus profundus DSM 5631] gi|284011183|gb|ADB57136.1| SMC domain protein [Archaeoglobus profundus DSM 5631] Length = 868 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 110/295 (37%), Gaps = 43/295 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA----S 60 + IK++ I F+++ S R+ FD + VG NG GKT+ILEAI+ G Sbjct: 1 MLIKYVEIENFKSHRSSRVEFDRGVNLIVGRNGAGKTSILEAIAVALYGVKHGVKPSGVK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--NDVVIRVVDELNK 118 D+ R S R+ D I + + +RC ++ D IR E N Sbjct: 61 KDDLIR---DSASRYEIRLGFDFNGRDCLIVRSSDGNSYLRCDKLLEGDERIREWVERNV 117 Query: 119 HLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG---- 168 WL +D I ERR + + + I+ + R + ++++ Sbjct: 118 APSHVWLNAIYVRQGEIDEIVKDD--ERREKIIKRITQIE-DYERAWENLGKVIKHFKEE 174 Query: 169 RNRLLTEGYFDSSWC-------SSIEAQMAELGVKINIAR------------VEMINALS 209 ++RL E +S +EA+ EL K+ R E + L Sbjct: 175 KSRLEKEIKAESDVENRIKEVKEELEAKKRELDKKMIELRDVEEKLAEAEAEKERVEKLR 234 Query: 210 SLIMEY-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 E +KE+ + + G ++ LK+E + R+++ + Sbjct: 235 EKFEELNREKESIEKHAGKIEERIRGLRER-RNGLKKEIEELKSRVRRLEEIRGY 288 Score = 44.9 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 18/231 (7%) Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIAR--VEMINAL 208 D +R + +R R L EG ++E +L ++ R E + + Sbjct: 641 DETYRNVYNLYTE-LRSRYFGLREGVERLKDHIKTLEKSAEDLENRVKKLREKRERVEKI 699 Query: 209 SSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266 ++ ++ +E F K+SLT + + ++ + EE + G + +R Sbjct: 700 GREVLPKLEEIREKFRKYKVSLTEYAFKEVEKIASEIFEEMTDGKYSGIVLKREEKRK-- 757 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 + + V Y I+ S GE + + LA + + G P+L+LDE + L Sbjct: 758 --EKVTVKVLYQGAERDISFLSGGELIALGLAFRLALSVFMIQ--GKIPLLILDEPTPFL 813 Query: 327 DEDKRNALFRIVT---DIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374 D+++R L I+ Q+ + D+ + D + K +R+ H + Sbjct: 814 DDERRRKLVDIMNRYLKKIPQVIVVTHDEELRDVAD---KVIRVELHGGVS 861 >gi|126699476|ref|YP_001088373.1| putative conjugative transposon DNA recombination protein [Clostridium difficile 630] gi|115250913|emb|CAJ68739.1| putative DNA recombination protein Tn1549-like,CTn5-Orf24 [Clostridium difficile] Length = 540 Score = 65.3 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I+ L I F+ ++ + F+ I VG+NG GK+ ILEAI+ + G + + Sbjct: 1 MSIRKLKIKNFKCFSDWFTVDFENGINILVGNNGTGKSTILEAINLVLTGTYHGKNIRNE 60 Query: 64 VTRI 67 +T+ Sbjct: 61 LTQY 64 >gi|259046635|ref|ZP_05737036.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] gi|259036800|gb|EEW38055.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] Length = 1189 Score = 65.3 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 101/292 (34%), Gaps = 32/292 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 ++++ + +S F+++A + FD T VG NG GK+N+ EAI L + R Sbjct: 1 MQLEKIEMSGFKSFADKTTIEFDKGVTAVVGPNGSGKSNLSEAIKWVLGEQSAKSLRGKR 60 Query: 61 YADVTRIGSP-------SFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIR 111 DV GS + + + E D + + + IN +R Sbjct: 61 MDDVIFAGSQTRKPVNIAEVNLYINNEDKVLATDQTQVVLTRRLNRNGASDFLINKKPVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +++IF+ ERR ++ + ++ R + Sbjct: 121 LKDITDLMMDSGLGKDSFALISQGKVEQIFNEKPEERRMIIEEAAGVLK--YKDRKNQAQ 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R + L IE Q+A L + R + I +S + Sbjct: 179 RKLNQTQDHLNRV---EDILHEIEGQLAPLEEQ----REKAIAYVSKKEQLEEVETALLA 231 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYA--KKLFDGRKMDSMSRRTLIGPHRSDL 273 +++ Q L+E+ A + + ++D + + DL Sbjct: 232 VEIETLNAQWKVALQEVEQLQEQLAQTEATLESLQLDIEENQVTLEARNEDL 283 >gi|228470633|ref|ZP_04055489.1| RecF/RecN/SMC N domain protein [Porphyromonas uenonis 60-3] gi|228307641|gb|EEK16620.1| RecF/RecN/SMC N domain protein [Porphyromonas uenonis 60-3] Length = 680 Score = 65.3 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFR 57 + IK + I FRN+ + F + +G N GK+N+L AI L G R Sbjct: 1 MYIKEIKILNFRNFKEALIPFHEGVNVIIGHNNTGKSNLLRAIGLVLGYNYGHR 54 >gi|227488598|ref|ZP_03918914.1| possible chromosome segregation protein Smc [Corynebacterium glucuronolyticum ATCC 51867] gi|227091492|gb|EEI26804.1| possible chromosome segregation protein Smc [Corynebacterium glucuronolyticum ATCC 51867] Length = 1138 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 30/212 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS + F+ VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASATTMKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKQLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S + +G I + R R +IN R Sbjct: 61 MEDVIFAGAGSRKPLGRAEVTLNINNDDGALPIEYSEVSITRRMFRDGASEYEINGSKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR +++ + + E Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGKITEILESRPEDRRAYIEEAAGVLKHK-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAEL 193 + R + D ++ Q+ L Sbjct: 176 KA--QRKLTGMQANLDRLTDLTDELKRQLKPL 205 >gi|320088176|emb|CBY97938.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 396 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++I L++ FR + L + FD TI V NG GKT +L+AI Sbjct: 1 MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRL 45 >gi|13096783|pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima gi|13096784|pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima gi|13096785|pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima gi|13096786|pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima gi|13096787|pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima gi|13096788|pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima Length = 322 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 16/152 (10%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++K L + F+++ L F + T VG NG GK+NI++AI ++ + R + Sbjct: 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASE 60 Query: 61 YADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR---VVD 114 D+ GS + S + + E +I++ E + +N +R + D Sbjct: 61 KFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELK-RTGENTYYLNGSPVRLKDIRD 119 Query: 115 ELNKHLRISWLVP-----SMDRIFSGLSMERR 141 +DRI + E R Sbjct: 120 RFAGTGLGVDFYSIVGQGQIDRIVNASPEELR 151 >gi|215428366|ref|ZP_03426285.1| chromosome partition protein Smc [Mycobacterium tuberculosis T92] gi|289751590|ref|ZP_06510968.1| chromosome partition protein Smc [Mycobacterium tuberculosis T92] gi|289692177|gb|EFD59606.1| chromosome partition protein Smc [Mycobacterium tuberculosis T92] Length = 124 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A+ L F+ T VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + I + R R +IN R Sbjct: 61 MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120 Query: 112 VVD 114 ++D Sbjct: 121 LMD 123 >gi|20090716|ref|NP_616791.1| hypothetical protein MA1866 [Methanosarcina acetivorans C2A] gi|19915770|gb|AAM05271.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 613 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 65/400 (16%), Positives = 131/400 (32%), Gaps = 79/400 (19%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K FR + L ++ + +G N GKT+IL+++ L+ G G SY+ Sbjct: 1 MHVK-----NFRCIKEINLELNSGLNVIIGANNSGKTSILDSLR-LALGIG----SYSRS 50 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC--LQINDVVIRVVDELNKHLRI 122 + + FF + D++ T +DR V L++N ++ ++ Sbjct: 51 IYVSNEDFFVDEFGQKAQTIEIDLTFSELTPEDRGVFIEMLKVNGDGNHELEFHVRYK-- 108 Query: 123 SWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMIDFERLMRGRN 170 +G+ R R+ +F I + + D E ++ Sbjct: 109 -------IEKKNGIEKIRVRYWGGEKEANTIPIEVMELFHI--VYLEALRDSENYLKPNR 159 Query: 171 -----RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 +L + D + Q+ E E+I I E+++ H Sbjct: 160 GNKLGQLFLKLVPDETAQEKHAQQIYESITANEDW-NELITDARKKINEHLENTTLEHDT 218 Query: 226 LSLT--------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 LS+ + + LK+ + + + + + + PH +LI+ Sbjct: 219 LSIDIDFAPVDFTKIAERLKIYIPILKKIKREMIENIFEEEGWEKYFEY-PHSDELILKK 277 Query: 278 CDKAITIAHGSTGEQK------------------------VVLVGIFLA-HARLISNTTG 312 K + E K ++ + + ++ + Sbjct: 278 DIKDLLKNEA-NSELKFKISKLEKFIQKFEIYQNGLGYNNLIYIATIIGDLIERVNRKSE 336 Query: 313 FAPILLLDEISAHLDEDKRNALFRI---VTDIGSQIFMTG 349 LL++E AHL +N LF + QIF+T Sbjct: 337 NYIALLIEEPEAHLHPQLQNILFNYFKNIESKNIQIFLTS 376 >gi|307709492|ref|ZP_07645949.1| chromosome segregation protein SMC [Streptococcus mitis SK564] gi|307619806|gb|EFN98925.1| chromosome segregation protein SMC [Streptococcus mitis SK564] Length = 1179 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 109/291 (37%), Gaps = 38/291 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK---------INIARVE-MINALSSLIM 213 ++ L ++ Q+ L + + R ++ L + I Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLEKQAENTRKFLDLEGKRKAIYLDVLVAQIK 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 E + + +L+ L + Q L+EE + ++ D + T Sbjct: 236 ENKAELDSTAEELAQVQELLTSYYQKREKLEEE--NQTLKKQRQDLQAEMT 284 >gi|16767037|ref|NP_462652.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422321|gb|AAL22611.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|267996020|gb|ACY90905.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312914778|dbj|BAJ38752.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226808|gb|EFX51858.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332990601|gb|AEF09584.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 396 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++I L++ FR + L + FD TI V NG GKT +L+AI Sbjct: 1 MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRL 45 >gi|319789740|ref|YP_004151373.1| SMC domain protein [Thermovibrio ammonificans HB-1] gi|317114242|gb|ADU96732.1| SMC domain protein [Thermovibrio ammonificans HB-1] Length = 894 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 23/242 (9%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +++ L++ F ++ S + F Q + +G+N GKT+IL + F G +RA ++ Sbjct: 3 RLRGLSLKNFLSHRSTEIPFTDQAFVILGENASGKTSILRGVFFGVFGEDLKRAKAEELI 62 Query: 66 RIGSPSF-FSTFARVEGMEGLADISI------KLETRDDRSVRCLQINDVVIRVVDEL-- 116 S S +G + I + E +D + + V +++ L Sbjct: 63 NRASNSAEVKVEFLYKGKLYTLERRIHVRRSSEAELYEDGRLVARGVKQVKAYLLENLGL 122 Query: 117 -NKHLRISWLVP--SMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLMRG 168 + + VP + +F G ERR+ L+R + + R + + + + Sbjct: 123 DGNLFKNTVFVPQGEILDLFKGTPKERRKVLNRLLGLEEIGELHRRIKEELQKLKNTLNL 182 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS----SLIMEYVQKENFPHI 224 + ++ ++ E + + RVE + L I E ++ Sbjct: 183 VVERVKHYQESRQRLRELQLRLQE--KERELERVERLRELETEKVEGIKEELRALQAEKE 240 Query: 225 KL 226 KL Sbjct: 241 KL 242 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 +T+ S G+Q + + A A+ + +L+LDE + HLD+ +R AL ++ Sbjct: 798 GTLTLEQLSGGQQIAFALALRFAMAKQFNQ---KMELLVLDEPTVHLDQPRRTALTELLM 854 Query: 340 DIG 342 + Sbjct: 855 KLK 857 >gi|300780914|ref|ZP_07090768.1| chromosome segregation protein Smc [Corynebacterium genitalium ATCC 33030] gi|300532621|gb|EFK53682.1| chromosome segregation protein Smc [Corynebacterium genitalium ATCC 33030] Length = 1153 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 124/404 (30%), Gaps = 68/404 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + + L + F+++AS + F+ VG NG GK+N+++A++++ + R Sbjct: 1 MHLSSLTLKGFKSFASSTTMKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGK 60 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ A V +D + +E R + IN R Sbjct: 61 MEDVIFAGAGERKQLGRAEVTLTFDNSDRKLPIEYTQVAITRRMFRDGASEYEINGSKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I ++ I +RR F++ + R R+ + Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLNEILESRPEDRRAFIEEAAGVLKHRRRKEKAQRK 180 Query: 164 RLMRGRN--------------------RLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 N + + +A++ G ++ R Sbjct: 181 LTGMQANLDRLTDLTDELGKQLKPLARQAEAAQRAATVQADLRDARLKIAGHRVVTLRAS 240 Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 +I+A + + QK +L +++ + S++ R Sbjct: 241 LIDA-TRAAELHAQKVQDVTAELEDAEGHQQTVEENQARATAAADAAQQLWFGLSSLAER 299 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGE--QKVVLVGIFLAHARLISNTTGFAPILLLDE 321 T + + D+ + G+ +K++ + L+ Sbjct: 300 TSATLRIASERARHADEIVDY----RGQDPKKLIALAERAEEDHAAKQAAHDKAQAALNA 355 Query: 322 ISAHLD--------------------EDKRNALFRIVTDIGSQI 345 + + + D+R + R++ SQ Sbjct: 356 VLSEVAELKEKAAAAEAEHKAQVRAIADRREGVVRLLAQEESQA 399 >gi|297478203|ref|XP_002689921.1| PREDICTED: structural maintenance of chromosomes 2 [Bos taurus] gi|296484411|gb|DAA26526.1| structural maintenance of chromosomes 2 [Bos taurus] Length = 1191 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 94/273 (34%), Gaps = 29/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSVILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKALVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + ++ ++ I+ RM +++ Sbjct: 120 VNANNTRVYDLFCSVGLNVNNPHFLIMQGRIT--KVMNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + R E + +E ++ K+ R + L+ E E+ Sbjct: 178 KQNAQRTIEKKEAKL-REIKTILEEEITPTIQKLKEERSSYLE-YQKLLREI---EHLSR 232 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +E K+ ++ Sbjct: 233 LYIAYQFLLAEDTKERSAEALKEMQDKIKKLQE 265 >gi|332074580|gb|EGI85054.1| chromosome segregation protein SMC [Streptococcus pneumoniae GA17545] Length = 1179 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 107/280 (38%), Gaps = 31/280 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQM--AELGVKINIARVE-MINALSSLIMEYV 216 ++ L Y + +E Q A + + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQDENARKFLDLEGQRKAIYLDVLVAQIKENK 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 239 AELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|312867169|ref|ZP_07727379.1| DNA repair protein RecN [Streptococcus parasanguinis F0405] gi|311097298|gb|EFQ55532.1| DNA repair protein RecN [Streptococcus parasanguinis F0405] Length = 552 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 62/385 (16%), Positives = 130/385 (33%), Gaps = 65/385 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P + +G+E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFTVESNRHLTALFEEQGLEWTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + + D+ F D F +R+ D++RL + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDAAFFQTKDAYRQTFEDYKRLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINA--LSSLIMEYVQK 218 L + + IE Q+AE+ ++ R ++N ++ + Sbjct: 176 VELQRNQQENKARIEMIEFQIAEIEAASLEVDEDLRLEQERQRLLNHKMIADTLTNAYTM 235 Query: 219 ENFPHIKLSLTGFLDG--------KFDQSFCALKEEYAKKLFD-----GRKMDSMSRRTL 265 + SL+ ++D S+ L + ++ + R D + Sbjct: 236 LDAEEFS-SLSNVRSAMNDLESIEEYDPSYKELSSQLSETFYALEDITKRLEDVVDGLEF 294 Query: 266 IGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 G + +IT +G G+ K VL ++ T +L ++S+ Sbjct: 295 DGNRLMQVESRLDLIHSITRKYG--GQVKDVL--------EYLAQITKEYSLLTGSDLSS 344 Query: 325 HLDEDK-----RNALFRIVTDIGSQ 344 D +K +L + D+ Q Sbjct: 345 E-DLEKELKRLEKSLVTLAQDLNDQ 368 >gi|307108886|gb|EFN57125.1| hypothetical protein CHLNCDRAFT_51187 [Chlorella variabilis] Length = 2055 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 4/119 (3%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYAD 63 I + + F++ + L + F + VG NG GK+++L+A+ F + R AS A+ Sbjct: 916 HITSVRLQGFKSVSQLDVRFGRGLNVIVGANGCGKSSLLDALCFAFAAAPRSLSVASLAE 975 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLR 121 + S +++ G ++ R ++N R E+ + LR Sbjct: 976 LQNSDSNQVCEVCVQLQTGRGTGREMHTVQAALTPDGTRAYKVNG-RQRSGKEVREFLR 1033 >gi|68637931|emb|CAI36136.1| hypothetical protein [Pseudomonas syringae pv. phaseolicola] Length = 710 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 23/42 (54%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46 + I L + +RN+ +VF+ +G+NG GKTN+ A Sbjct: 1 MHISRLQLVNYRNFECANVVFNKGVNTIIGENGSGKTNLFRA 42 >gi|148259805|ref|YP_001233932.1| ATP-dependent OLD family endonuclease [Acidiphilium cryptum JF-5] gi|146401486|gb|ABQ30013.1| ATP-dependent endonuclease of the OLD family-like protein [Acidiphilium cryptum JF-5] Length = 647 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 72/376 (19%), Positives = 125/376 (33%), Gaps = 66/376 (17%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASY 61 + ++I L+I FR+ +L + T+ +G N GKT IL+A+ + R G R + Sbjct: 7 DGMRITRLHIENFRSVRNLDIELGE-TTVLIGPNNAGKTAILDAVRIVLTRRWGQRGTGF 65 Query: 62 ADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-----CLQINDVVIRVVDE 115 + P L + I + + RS + D++ D Sbjct: 66 TENDVHRPEPDG--------DPRTLPPVRIVIAMEESRSGEWDPDMVAALEDIITVTADR 117 Query: 116 LNKHLRISW----------LVPSMDRIFS-GLSM-ERRRFLDR-MVFAIDPRH-RRRMID 161 + L + P+ + S G+ + ERRR ++ F+ P + D Sbjct: 118 MRNLLTVQVTCAWSEEKEAFDPAWQFLDSAGVPLRERRRAINLTGFFSYMPLFWLGALRD 177 Query: 162 FERLMRGRN----RLLTEGYFDSSWCSSIEAQMAELGVKINIA--RVEMINALSSLIMEY 215 R+ RLL + +AEL +I A R+ I + Sbjct: 178 ATNEFTPRSGHWGRLLRSVRIPDELEAEALRILAELDARIAAADPRLAEIAEMIGQATRV 237 Query: 216 VQKENFPHIKL-SLTGFLDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 E +L +L ++ ++ L+ EE L G G L Sbjct: 238 AIGEGPGGARLATLPLGIEEMLQRTGIVLRNEELRPWLPLGH----------HGQGLQSL 287 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 V + +A + +Q LA A G + ++E AHL Sbjct: 288 AVIFLFQAAVL------QQ--------LAEAE----RPGVEAVFAIEEPEAHLHPQAART 329 Query: 334 LFRIVTDIGSQIFMTG 349 L+ V + Q M+ Sbjct: 330 LWEHVQALAGQKLMST 345 >gi|149012299|ref|ZP_01833368.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP19-BS75] gi|147763625|gb|EDK70560.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP19-BS75] Length = 1081 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|292655017|ref|YP_003534914.1| DNA double-strand break repair ATPase Rad50 [Haloferax volcanii DS2] gi|49036440|sp|P62133|RAD50_HALVO RecName: Full=DNA double-strand break repair rad50 ATPase gi|46309119|emb|CAG25775.1| DNA double-strand break repair Rad50 ATPase [Haloferax volcanii] gi|291371675|gb|ADE03902.1| DNA double-strand break repair ATPase Rad50 [Haloferax volcanii DS2] Length = 893 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 1/100 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ + I F+ Y L T+ G NG GK+++LEA F G + DV Sbjct: 1 MRFTRIAIRNFKPYEDAELDLRDGVTVIHGVNGSGKSSLLEACFFALYGSKALAGTLEDV 60 Query: 65 TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCL 103 G+ T V G E D +++ + +C+ Sbjct: 61 VTTGADDAEITLEFVHDGGEYRIDRRVRVSGDRATTAKCV 100 >gi|4324607|gb|AAD16951.1| putative ATP binding protein SugR [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 519 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++I L++ FR + L + FD TI V NG GKT +L+AI Sbjct: 1 MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRL 45 >gi|85709148|ref|ZP_01040214.1| SMC protein [Erythrobacter sp. NAP1] gi|85690682|gb|EAQ30685.1| SMC protein [Erythrobacter sp. NAP1] Length = 1140 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 30/229 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 ++I L +S F+++ L + T VG NG GK+N+LEAI ++ + R Sbjct: 1 MQISRLKLSGFKSFVEPAELRIEPGLTGVVGPNGCGKSNLLEAIRWVMGENSPKSMRSGG 60 Query: 61 YADVTRIG-SPSFFSTFARVEGM-EGLADISIKLETRDDRS-VRCLQINDVVIRVVD--- 114 DV G S FA V D I + R +R ++N +R D Sbjct: 61 MEDVIFAGTSTRPARAFAEVVLHASDEHDEEIVVTRRIERGAGSAYRVNGRDVRAKDVAL 120 Query: 115 -----ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----AIDP-----------R 154 H + ++ + ERR L+ + + Sbjct: 121 TFADAATGAHSPALVSQGKIAQVIAAKPAERRMMLEEAAGIAGLHVRRKDAESKLRSTEK 180 Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + R+ D + + L + + + Q++ ++ AR Sbjct: 181 NLERLEDLMAGLDSQMASLKRQAKQAERYTKLTEQISHAEARLVFARWR 229 >gi|257094930|ref|YP_003168571.1| SMC domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047454|gb|ACV36642.1| SMC domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 489 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 28/43 (65%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +++K + ++ FR + S + + ++FVG+NG GKT +L+ I Sbjct: 14 MRLKKITLNNFRCFESFEVTLHPRLSVFVGENGAGKTAVLDGI 56 >gi|296876931|ref|ZP_06900976.1| DNA repair protein RecN [Streptococcus parasanguinis ATCC 15912] gi|296432062|gb|EFH17864.1| DNA repair protein RecN [Streptococcus parasanguinis ATCC 15912] Length = 552 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 62/385 (16%), Positives = 131/385 (34%), Gaps = 65/385 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P + +G+E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFTVENNRHLTALFEEQGLEWTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + + D+ F D F +R+ D++RL + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDAAFFQTKDAYRQTFEDYKRLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMINA--LSSLIMEYVQK 218 L + + +E Q+AE+ V++ R ++N ++ + Sbjct: 176 VELQRNQQENKARIEMLEFQIAEIEAAALEVDEDVRLEQERQRLLNHKMIADTLTNAYTM 235 Query: 219 ENFPHIKLSLTGFLDG--------KFDQSFCALKEEYAKKLFD-----GRKMDSMSRRTL 265 + SL+ ++D S+ L + ++ + R D + Sbjct: 236 LDAEEFS-SLSNVRSAMNDLESIEEYDPSYKELSSQLSETFYALEDITKRLEDVVDGLEF 294 Query: 266 IGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 G + +IT +G G+ K VL ++ T +L ++S+ Sbjct: 295 DGNRLMQVESRLDLIHSITRKYG--GQVKDVL--------EYLAQITKEYNLLTGSDLSS 344 Query: 325 HLDEDK-----RNALFRIVTDIGSQ 344 D +K +L + D+ Q Sbjct: 345 E-DLEKELKRLEKSLVTLAQDLSDQ 368 >gi|227543202|ref|ZP_03973251.1| possible SMC structural partitioning protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181011|gb|EEI61983.1| possible SMC structural partitioning protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 1138 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 30/212 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++AS + F+ VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASATTMKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKQLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S + +G I + R R +IN R Sbjct: 61 MEDVIFAGAGSRKPLGRAEVTLTINNDDGALPIEYSEVSITRRMFRDGASEYEINGSKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + + + I +RR +++ + + E Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGKITEILESRPEDRRAYIEEAAGVLKHK-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAEL 193 + R + D ++ Q+ L Sbjct: 176 KA--QRKLTGMQANLDRLTDLTDELKRQLKPL 205 >gi|167548992|ref|ZP_02342751.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325625|gb|EDZ13464.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 465 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++I L++ FR + L + FD TI V NG GKT +L+AI Sbjct: 1 MRINKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRL 45 >gi|94496121|ref|ZP_01302699.1| Chromosome segregation protein SMC [Sphingomonas sp. SKA58] gi|94424300|gb|EAT09323.1| Chromosome segregation protein SMC [Sphingomonas sp. SKA58] Length = 1147 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 24/131 (18%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++IK L +S F+++ L + T VG NG GK+N+LEAI ++ S + R A Sbjct: 1 MQIKRLKLSGFKSFVDPTELRIEPGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGAG 60 Query: 61 YADVTRIG-----------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 DV G A G +G D++ ++E + R Sbjct: 61 MEDVIFAGTASRPRRDFAEVSLLTIQEQGELFNAVDVGADGELDVTRRIERGAGSAYRA- 119 Query: 104 QINDVVIRVVD 114 N +R D Sbjct: 120 --NGKDVRAKD 128 Score = 36.8 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K + S GEQ + V + T API +LDE+ A LD+ + Sbjct: 1037 GKKLAALTLLSGGEQALTAVALIFGLF-----LTNPAPICVLDEVDAPLDDANVERFCDL 1091 Query: 338 VTDIGSQI 345 + + +Q Sbjct: 1092 LDAMVAQT 1099 >gi|319789067|ref|YP_004150700.1| chromosome segregation protein SMC [Thermovibrio ammonificans HB-1] gi|317113569|gb|ADU96059.1| chromosome segregation protein SMC [Thermovibrio ammonificans HB-1] Length = 1171 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 59/355 (16%), Positives = 121/355 (34%), Gaps = 60/355 (16%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASYA 62 I+ L + F+++A + F VG NG GK+NI++A+ ++ G +G R S Sbjct: 2 IRSLKLKGFKSFADETEIRFSEGINCIVGPNGCGKSNIVDALKWVVGGTSPKGMRADSIK 61 Query: 63 DVTRIGSP-------SFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVD 114 DV G+ + + E + A + +++ R IN +R + Sbjct: 62 DVIFKGAQGRRPARSAEVAVTVAAEDLFSAASLETEVKRRVTADGDSQFFINGKKVR-LK 120 Query: 115 ELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ + L DR+ ERR +D I P + + + + Sbjct: 121 DIQELFTNLGLSNRDYAFFEQGQVDRVLRMRPAERRALID-EAAGITP-FKEKREETLKQ 178 Query: 166 M--RGRNRLLTEGYFDSSW--CSSIEAQ------------------MAELGVKI-----N 198 + N G D +++ Q +A LG ++ Sbjct: 179 LGEAQANLESVRGVIDEVAKNLRALKNQAEKAQKFQELRTRERRLELALLGCQLKAVQEE 238 Query: 199 IARVE-MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 AR+E I L ++ + ++L + Q +E + + K Sbjct: 239 KARLEGSIKVLQEDRASLEREVSRIEVELQELRSQLEQLSQELEETTKELHEV--EKSKK 296 Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312 ++ +R + L + +++ EQK+ + + A + + G Sbjct: 297 EAAVKRDFLEKEIKRLKSEIEERSFEK------EQKLKKLSLVAAEIEELRSLEG 345 >gi|284045140|ref|YP_003395480.1| SMC domain protein [Conexibacter woesei DSM 14684] gi|283949361|gb|ADB52105.1| SMC domain protein [Conexibacter woesei DSM 14684] Length = 1081 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 55/291 (18%), Positives = 106/291 (36%), Gaps = 34/291 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 + +K L + F+++ +L F + ++ VG NG GK+N+ +A+ + + R S Sbjct: 1 MHLKSLTLKGFKSFPDRTKLAFGSGVSVVVGPNGSGKSNVTDAVLWAMGEQSPLAIRGQS 60 Query: 61 YADVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVI 110 DV G S A VE + +D +++++ + +R L ++N Sbjct: 61 MQDVI-FGGGHGRKASQSAEVELVLDNSDKTLEMDFAEVSILRRLDRSGDGEYRLNGARC 119 Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 R+ D L K +++I + +RR ++ R RRR Sbjct: 120 RLADVLEVLSDTGLGKESHSVISQGRVEQIVTSKPKDRRLLIEEAAGLGKHRKRRRRAQL 179 Query: 163 ERLMRGRN--RLLTEGYFDSSWCSSIEAQ--MAELGVKINIARVEMINALSSLIMEYVQK 218 + N R L S ++ Q AEL +I +E L + Sbjct: 180 KLARTQDNLDRALDVEREARSRLRPLKRQAEAAELHERIERQSLEARWELGRDAARATRL 239 Query: 219 ENFPHIKLSLTGFLDGKFDQS-----FCALKEEYAKKL-FDGRKMDSMSRR 263 E + ++ G + + +EE + L + + +S R Sbjct: 240 E-LAQAEEAVRGARARRDEAEQALSGVAKRREEAEQALQARSEQREELSGR 289 >gi|256838545|ref|ZP_05544055.1| SMC domain-containing protein [Parabacteroides sp. D13] gi|256739464|gb|EEU52788.1| SMC domain-containing protein [Parabacteroides sp. D13] Length = 693 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 24/46 (52%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + IK + IS FRN+ + F + +G N GK+N+L AI Sbjct: 12 NMYIKEIKISNFRNFRDASVPFHEGVNVIIGHNNTGKSNLLRAIGL 57 >gi|19553265|ref|NP_601267.1| chromosome segregation ATPase [Corynebacterium glutamicum ATCC 13032] gi|62390901|ref|YP_226303.1| chromosome segregation ATPase [Corynebacterium glutamicum ATCC 13032] gi|21324835|dbj|BAB99458.1| Chromosome segregation ATPases [Corynebacterium glutamicum ATCC 13032] gi|41326240|emb|CAF20402.1| Chromosome segregation ATPase [Corynebacterium glutamicum ATCC 13032] Length = 1155 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 30/209 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALPIEYTEVSVTRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I + I ERR +++ + R E Sbjct: 121 LMDIQELLSDTGIGREMHIMVGQGKLAEILESRPEERRAYIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 + R L + + ++A+ Sbjct: 176 KA----QRKLQGMQVNLDRLQDLTHELAK 200 >gi|301779748|ref|XP_002925291.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 2-like [Ailuropoda melanoleuca] Length = 1259 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 101/281 (35%), Gaps = 36/281 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKM 257 + ++ L + D+S LKE + +KL + K Sbjct: 233 LYIAYQFLLAEDTKDRSAEELKEMQDKVVKLQEKLSENDKK 273 >gi|145296029|ref|YP_001138850.1| hypothetical protein cgR_1952 [Corynebacterium glutamicum R] gi|140845949|dbj|BAF54948.1| hypothetical protein [Corynebacterium glutamicum R] Length = 1155 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 30/209 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALSIEYTEVSVTRRMFRDGASEYEINGAKAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++D + + + I + I ERR +++ + R E Sbjct: 121 LMDIQELLSDTGIGREMHIMVGQGKLAEILESRPEERRAYIEEAAGVLKHR-----RRKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 + R L + + ++A+ Sbjct: 176 KA----QRKLQGMQVNLDRLQDLTHELAK 200 >gi|238910207|ref|ZP_04654044.1| ATP binding protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 465 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++I L++ FR + L + FD TI V NG GKT +L+AI Sbjct: 1 MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTAVLDAIRL 45 >gi|289578457|ref|YP_003477084.1| chromosome segregation protein SMC [Thermoanaerobacter italicus Ab9] gi|297544733|ref|YP_003677035.1| chromosome segregation protein SMC [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528170|gb|ADD02522.1| chromosome segregation protein SMC [Thermoanaerobacter italicus Ab9] gi|296842508|gb|ADH61024.1| chromosome segregation protein SMC [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1196 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60 + +K L + F+++A + L F+ T VG NG GK+NI +AI + + R + Sbjct: 1 MYLKKLELQGFKSFADKVTLNFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV GS + F ++ +G + + + RS IN R Sbjct: 61 LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + D L +D I S +RR+ + + R+ Sbjct: 121 LRDIYELFLDTGVGKEGYSIIGQGRIDEILSAKPEDRRQIFEEAIGISKYRY 172 >gi|153869104|ref|ZP_01998792.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152074341|gb|EDN71205.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 446 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 26/45 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 +KI + I FR L L D Q T+ VG+N GKT IL+AI+ Sbjct: 1 MKISHITIENFRAIKKLDLPLDPQLTVLVGNNAAGKTTILDAIAV 45 >gi|295402808|ref|ZP_06812744.1| SMC domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294975154|gb|EFG50796.1| SMC domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 648 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 58/389 (14%), Positives = 131/389 (33%), Gaps = 73/389 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L I F+ ++ + F+ + +G N GKT I++AI ++ R S Sbjct: 1 MYISKLYIKNFKCFSEFEIEFNEGLNVIIGSNNSGKTTIIKAIEYIFN----RSVSKTPS 56 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F ++ + + + +D + + ++ L + Sbjct: 57 I----DDFNKELDDLDNPPEIIISATLRSSHNDTLEDKAIVASWLTKLESPWEATLTYKY 112 Query: 125 LVPSMD-----RIFSGLSMERRRFLDRMVFA---IDPRHRRRMIDFERLMRGRNRLLTEG 176 +P + ++ R+ F + + ++ + R Sbjct: 113 FLPESNWKEYKGAIKEAQNDKERWEILENFLKKYVSRIYGGKIENKIRA--------ETE 164 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK- 235 Y + C +++A + ++ K+ R ++ L + K+N P+ + S + K Sbjct: 165 YLEKIHCETLDA-LRDVESKMFTGRNPLLKQLLTHF-----KDNEPNNEKSSDSLISSKQ 218 Query: 236 -FDQSFCALKEEYAKKLFDG-----------------------RKMDSMSRRTLIGPHRS 271 F + + E +L + D +S LI + + Sbjct: 219 EFQKYSNKVVENIVSRLNRKEILRFAQNTGAAIGGEPDIDGRLEEADVLSILRLIIRNET 278 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFA----PILLLDEISAHL 326 + + + + G ++ + + LA ++I S G PILL++E AHL Sbjct: 279 GIEIPIINNGL-------GYNNLIYMSLILAKFKMITSKEYGENAKTFPILLIEEPEAHL 331 Query: 327 DEDKRNALFRIVTD------IGSQIFMTG 349 + + + + + QIF+T Sbjct: 332 HPALQYNFLKFLKEEIDKQTLSRQIFITT 360 >gi|294496455|ref|YP_003542948.1| SMC domain protein [Methanohalophilus mahii DSM 5219] gi|292667454|gb|ADE37303.1| SMC domain protein [Methanohalophilus mahii DSM 5219] Length = 889 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA----S 60 ++ K L + R+Y L + F+ T+ G NG GK+++LEA G R Sbjct: 1 MRFKRLKVKNIRSYNDLEIDFNDGVTVVSGVNGSGKSSLLEACFVGLFG--HRGIPKDFV 58 Query: 61 YADVTRIGSPSFF 73 AD+ R G Sbjct: 59 LADLVRKGCEDAA 71 >gi|49481943|gb|AAT66683.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A65] gi|49481955|gb|AAT66689.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A74] Length = 573 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 93/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ + A++ I + +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ ++ E+ L + LD A + + + Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 L+ + S E QMA R++++ +E E + Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQASLELGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + A+++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248 >gi|73971500|ref|XP_867410.1| PREDICTED: similar to Structural maintenance of chromosome 2-like 1 protein (Chromosome-associated protein E) (hCAP-E) (XCAP-E homolog) isoform 2 [Canis familiaris] Length = 278 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 102/286 (35%), Gaps = 36/286 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNSRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKIMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKMDSMSR 262 + ++ L + ++S LKE + +KL + K R Sbjct: 233 LYIAYQFLLAEDTKERSAEELKEMQDKVVKLQEKLSENDKKIKALR 278 >gi|85374547|ref|YP_458609.1| chromosome segregation protein [Erythrobacter litoralis HTCC2594] gi|84787630|gb|ABC63812.1| chromosome segregation protein [Erythrobacter litoralis HTCC2594] Length = 1140 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 81/230 (35%), Gaps = 36/230 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 ++I+ L +S F+++ L + T VG NG GK+N+LEAI ++ + R Sbjct: 1 MQIRRLKLSGFKSFVEPAELRIEPGLTGVVGPNGCGKSNLLEAIRWVMGENSPKSMRSGG 60 Query: 61 YADVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 DV G+ + V+ D++ ++E + R +N +R D Sbjct: 61 MEDVIFAGTETRPPRDFAEVVLQAVDDDGEELDVTRRIERGAGSAYR---VNGHDVRAKD 117 Query: 115 --------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----AIDPR-------- 154 H + ++ + +ERR L+ + R Sbjct: 118 VALTFADAATGAHSPALVSQGKIAQVIAAKPIERRMMLEEAAGIAGLHVRKRDAESKLRS 177 Query: 155 ---HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 + R+ D + + L + + + Q+A ++ AR Sbjct: 178 TEKNLERLEDLMAGLDSQMASLRRQAKQAERYTKLTDQIAIAEARLLYAR 227 >gi|291563452|emb|CBL42268.1| condensin subunit Smc [butyrate-producing bacterium SS3/4] Length = 1185 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 111/288 (38%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60 + +K + + F+++A+ + F T VG NG GK+N+ +A+ ++ + R +S Sbjct: 1 MYLKSIEVQGFKSFANKIIFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQKVKQLRSSS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ F ++ + I + + R RS +N R Sbjct: 61 MQDVIFSGTEMRKPQGFAYVAITLDNSDHQLAIDYDEVTVSRRIYRSGESEYLLNGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG +RR D + + R+ + + Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGRPEDRRELFDEAAGIVKFKRRKAIAQ-K 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM----INALSSLIM 213 +L + L+ S S +E Q+ AE + R E+ +N + + Sbjct: 180 KLEDEKQNLVRV----SDILSELEKQVGPLAKQAETAKEYLRLREELKRFDVNLFLADLK 235 Query: 214 EY-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 QK + ++TG ++ + + ALKEEY + R +D Sbjct: 236 AIEDQKLELTRKEHTVTGDME-ESKAAAEALKEEYDRISEAVRVLDEK 282 >gi|78357538|ref|YP_388987.1| hypothetical protein Dde_2495 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219943|gb|ABB39292.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 630 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 72/420 (17%), Positives = 132/420 (31%), Gaps = 81/420 (19%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ L I +++N L FD +FVG NG GK+N+ EA+ + FR Sbjct: 1 MRLTSLYIGQYKNLRDFSLSFDGDSFIDVFVGKNGTGKSNLFEALIEI-----FRHLVEF 55 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D + + ++G + T + + + + V+ + H Sbjct: 56 DRDKAPCDFNYRIGFEIDGKATEIGWNSGKLTIGGKERKTIGKTPLPDNVLIYYSGHNDT 115 Query: 123 SW-LVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRM-------------IDF----- 162 LV + F ++R F + F I P ++ + F Sbjct: 116 VANLVEQYEEAFRKR-IKRADFDEARYFIGIGPDYKALLLAVLLMQPDTCKARQFICQKL 174 Query: 163 --------ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214 ++ R + FD + G+ ++ L I Sbjct: 175 GIATVALEAKVALERPAYAADSRFDIELNDETDRYWKPEGIT-----ATFLDRLHGCINT 229 Query: 215 YV-----QKENFPHIKLSLTGFLDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGP 268 + F + F K Q F L +E ++ + + + ++ T+ Sbjct: 230 ATGSPVRSEGYFAEPDRYILYFDIAKIRQEFDDLSPQELFRQFDNLKTLGMLTEITIP-- 287 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 L + TIAH S G+ + V + + L + I LLDE + L Sbjct: 288 ----LQLT-GGVDATIAHFSDGQFQSVYI---YSIVELFKD---RNCITLLDEPDSFLHP 336 Query: 329 DKRNALFRIVTDIGSQIF-MTGTDKSVFDSL-------------NETAKFMRISNHQALC 374 + + + Q+F +T T L KF I +QA C Sbjct: 337 EWQFDFLK-------QVFEITDTTAKNNHVLMSSHSAVTLIPHDKTKIKFFDIKGNQANC 389 >gi|226226181|ref|YP_002760287.1| exonuclease [Gemmatimonas aurantiaca T-27] gi|226089372|dbj|BAH37817.1| exonuclease [Gemmatimonas aurantiaca T-27] Length = 800 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 53/280 (18%), Positives = 100/280 (35%), Gaps = 27/280 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYAD 63 +++ L++ FR +A R+ F T +G NG GK+ ILEAI++ G R + Sbjct: 1 MRLHSLHLVNFRQHADTRIDFALGLTGIIGPNGSGKSTILEAIAWSLYGNSAARGNKDS- 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV---------VD 114 R S RVE + LA ++ + L + I Sbjct: 60 -IRRLSVEDVRAPVRVELVFELAGHRYRVARSLSGAECFLDDAEQPIASTVTGVSEFMQR 118 Query: 115 ELNKHLRISWLVP-----SMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFERLMRG 168 L + +D + + ER RFL R++ + + + + R + Sbjct: 119 RLGMTRSEFFHTYFTGQKELDVMSALGPAERARFLSRVLGYDRISGAQEFVRERRRTLAA 178 Query: 169 RNRLLTEGYFDSS--WCSSIEAQ----MAELGVKINIARVEMINALSSLIMEYVQKENFP 222 L +G D W + +A+ MA + + ++ AL ++ + Sbjct: 179 EINGLRQGMSDPEAIWRAVSDAEARLAMATVRASEAEQQRQVAVALLETLVPQWRDVQAQ 238 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 +L L L + + L R++DS+++ Sbjct: 239 RERLQL---LQAECRVTEGELLARVRDAERLTRELDSVAQ 275 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 70/178 (39%), Gaps = 15/178 (8%) Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 AE G + R E + L + + + L+ + + + + Sbjct: 619 AEQGRRELARRQEALEGLE---RDRRLHDELDRAFTDIRTDLNVQLRPELADIASGFLAE 675 Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 L DGR D + + + S GE+ + + + LA +++I++ Sbjct: 676 LTDGRYKSLE--------FDEDYRLLVLEDEVRKPVISGGEEDLCNLVLRLAISQMIADR 727 Query: 311 TGFAP-ILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNETAKF 364 TG A +L+LDE+ LDE++R + ++ + Q+ + + V D L++ + Sbjct: 728 TGQAFSLLILDEVFGSLDENRRTNVVELLRHLHDRFEQVIVITHIEQVRDGLDQVVQV 785 >gi|295094865|emb|CBK83956.1| RecF/RecN/SMC N terminal domain. [Coprococcus sp. ART55/1] Length = 220 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 28/220 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + ++ F+++A+ + F+ T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVNGFKSFANKIVFKFNHGITCIVGPNGSGKSNVADAVRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ A V +D S+ ++ + R + IN V R Sbjct: 61 MEDVIFSGTQLRKPQGSAYVAITLDNSDHSLPIDYNEVTVARRVYRSGESEYLINGTVSR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + +++I +G ERR D + ++ E Sbjct: 121 LKDVYSLFFDTGIGKEGYSIIGQGQIEKILNGKPEERRELFDEAAGIVK--FKKNKAAAE 178 Query: 164 RLMR-GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 + + R+ L +E Q+ L + AR Sbjct: 179 KSLEAERDNLSRVN----DILKELEKQVGPLKEQSETARK 214 >gi|150005010|ref|YP_001299754.1| putative antigen PgaA [Bacteroides vulgatus ATCC 8482] gi|294778966|ref|ZP_06744381.1| RecF/RecN/SMC N-terminal domain protein [Bacteroides vulgatus PC510] gi|149933434|gb|ABR40132.1| conserved hypothetical protein, putative antigen PgaA [Bacteroides vulgatus ATCC 8482] gi|294447124|gb|EFG15709.1| RecF/RecN/SMC N-terminal domain protein [Bacteroides vulgatus PC510] Length = 445 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 26/45 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + +K + I FR + + + T+F+G NG GKT++L AI + Sbjct: 1 MILKKITIENFRCFKNYEVDLTPGITVFIGKNGAGKTSLLNAIRY 45 >gi|323484229|ref|ZP_08089598.1| hypothetical protein HMPREF9474_01349 [Clostridium symbiosum WAL-14163] gi|323402471|gb|EGA94800.1| hypothetical protein HMPREF9474_01349 [Clostridium symbiosum WAL-14163] Length = 641 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 26/219 (11%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60 + +K + I F+++A+ L F T VG NG GK+N+ +A+ L R R S Sbjct: 1 MYLKSIEIQGFKSFANRILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGGS 60 Query: 61 YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ F ++ + I + + R RS +IN R Sbjct: 61 MQDVIFSGTQMRKPQGFAYVAITLDNSDHKLPIGFDEVTISRRLYRSGESEYKINGSTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + RR++I + Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKLIAQK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 +L + LL S + +E Q+ L + AR Sbjct: 180 KLEDEKQNLLRV----SDILAELEKQVGPLARQSEAARE 214 >gi|49481957|gb|AAT66690.1| DNA repair and genetic recombination protein [Geobacillus kaue] Length = 573 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 87/271 (32%), Gaps = 39/271 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGL------ADISIKLETR--------DDRSVRCLQINDVVI-- 110 G+ + E A++ I +IN ++ Sbjct: 57 FGAEKAEIEGLFLLDDERHPCCQKCAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTT 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 V+ E+ L + LD A + + + Sbjct: 117 AVLREIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGAET---AEALARYRAVYEQHE 171 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L + S E QMA R++++ +E E +L Sbjct: 172 ALAKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQAAIETGEDERLMEEK 218 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 F + + A+++ Y +GR +DS+ Sbjct: 219 VRIVNFQKIYEAIQKSYGALAGEGRGLDSIR 249 >gi|85014499|ref|XP_955745.1| chromosome segregation protein [Encephalitozoon cuniculi GB-M1] gi|19171439|emb|CAD27164.1| CHROMOSOME SEGREGATION PROTEIN OF THE SMC FAMILY [Encephalitozoon cuniculi GB-M1] Length = 1017 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 9/120 (7%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + IK + + FR++ + + I VG NG GK++I+ A+ F+ G S Sbjct: 1 MHIKQIRLKNFRSFRDEVVVPLSEHTNIIVGRNGSGKSSIVSAVHFVLCGEKHSCESRTG 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + GS R EG +I ++ S R + V DE RI Sbjct: 61 LIHEGS--------RAMEEEGSVEIVFCDGLQEAGSGREFSVKRTVSVKKDEYMVDNRIV 112 Score = 38.0 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 26/193 (13%) Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 S + R M L L + + +F L + + Sbjct: 817 LSVVNRAAISQWENYMEQRDSMKRRLEDLKCDKRRILDFIAE---LDSKKEDTMKNAISL 873 Query: 243 LKE---EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 +KE E +L DG + S IG + I+ S G++ VV + + Sbjct: 874 VKEGFSELYSRLTDGGTAELYSYENGIGIK--------IGENISANLLSGGQKAVVALCL 925 Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD----IGSQIFMTGTDKSVF 355 + +P+ +LDEI A+LD R + ++ + G+Q +T K + Sbjct: 926 IFS-----MQRVSPSPLYVLDEIDANLDVQSRERVSMLIKEMSTSCGNQFIITTFRKEL- 979 Query: 356 DSLNETAKFMRIS 368 L+ +K++ + Sbjct: 980 --LSCGSKYLSVE 990 >gi|319938299|ref|ZP_08012696.1| chromosome segregation ATPase [Coprobacillus sp. 29_1] gi|319806592|gb|EFW03250.1| chromosome segregation ATPase [Coprobacillus sp. 29_1] Length = 981 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 92/282 (32%), Gaps = 43/282 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A + F T VG NG GK+NI +A+ L + R ++ Sbjct: 1 MHLKRIELHGFKSFADKSVIEFQPGITGIVGPNGCGKSNISDAVRWVLGEQSVKSLRGSN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG-----LADISIKLETRDDRSVRCLQINDVVI 110 ADV GS S + + ++ I + IN Sbjct: 61 MADVIFNGSEDRKPQSLAEVTLVFDNEDRFMNFDYNEVEITRRLYRQNNEAEYLINKEPC 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159 R + ++ + + L I S ERR + V R + Sbjct: 121 R-LKDIVDLIMDTGLGRDSLSIISQGNISTFADSKPEERRGMFEEAAGVAKYKKRKLESI 179 Query: 160 IDFERL-------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206 ER + + L + ++ Q+ + V + + I Sbjct: 180 RKLERTKDNLDRVEDICLELEKQIAPLKRQKEKAEVYLELKDQLQSIEVSVLVK---EIE 236 Query: 207 ALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 LS + + V + K+++ G + Q+ K+ Y Sbjct: 237 NLSESLKDLNVSLDFLDKEKVTIDGQILLNEQQNETLKKKMY 278 >gi|289628784|ref|ZP_06461738.1| putative ATP-dependent endonuclease of the OLD family [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330870251|gb|EGH04960.1| putative ATP-dependent endonuclease of the OLD family [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 711 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 23/42 (54%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46 + I L + +RN+ +VF+ +G+NG GKTN+ A Sbjct: 1 MHISRLQLVNYRNFKCANVVFNKGVNTIIGENGSGKTNLFRA 42 >gi|295696067|ref|YP_003589305.1| chromosome segregation protein SMC [Bacillus tusciae DSM 2912] gi|295411669|gb|ADG06161.1| chromosome segregation protein SMC [Bacillus tusciae DSM 2912] Length = 1192 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 51/293 (17%), Positives = 99/293 (33%), Gaps = 42/293 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + IK L IS F+++A + T VG NG GK+NI EA+ ++ R R A Sbjct: 1 MHIKRLEISGFKSFADRTEIELPPGITAVVGPNGSGKSNIAEALRWVLGEQSARSLRGAR 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV GS ++ ++ +G + I + R RS ++N R Sbjct: 61 MEDVIFAGSDGRKPINYCEVSLTLDNEDGRLPLDYREITVTRRLYRSGESEYRLNRQTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161 + D L K +D + S +RR + + R R + Sbjct: 121 LKDVIDLFLDTGLGKEAYSMIGQGRIDEVLSNRPEDRRGIFEDAAGIVKFKARKREALKK 180 Query: 162 FE-------------RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 E + + L +++ + A + ++ + R+E Sbjct: 181 LEDTKANMMRVEDVIHELTEQATPLAAEAEREQQYRALQEEAATIAGRLAVHRIE----- 235 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 MEY + ++ + L++ + + R+++ + Sbjct: 236 -QTHMEYQRAQDEAVKAEQAAAREAAALADAEAHLEQRRLELVRQDRELEEIQ 287 >gi|330885759|gb|EGH19908.1| putative ATP-dependent endonuclease of the OLD family [Pseudomonas syringae pv. glycinea str. race 4] Length = 711 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 23/42 (54%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46 + I L + +RN+ +VF+ +G+NG GKTN+ A Sbjct: 1 MHISRLQLVNYRNFKCANVVFNKGVNTIIGENGSGKTNLFRA 42 >gi|299132455|ref|ZP_07025650.1| conserved hypothetical protein [Afipia sp. 1NLS2] gi|298592592|gb|EFI52792.1| conserved hypothetical protein [Afipia sp. 1NLS2] Length = 588 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 65/385 (16%), Positives = 116/385 (30%), Gaps = 64/385 (16%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 I L+I FR +L + +G VGKT IL+AI L S D Sbjct: 12 AIYRLSIERFRGVKTLSWSPVRGVNVILGGGDVGKTTILDAIGLLLSPVNATNLSDTDYH 71 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 + F A + G + + E + Sbjct: 72 ARNIDAGFVIEAVMSLPPG-----------------SGINDQLKPSWPWEWSGADLSVPN 114 Query: 126 VPSMDRIFSGLSMERRRF-------LDRMVFAID--PRHRRRMIDFERLMRGRNRLLTEG 176 + +G + R R L + D +R L+ Sbjct: 115 TDDDSK-PAGEPVYRLRVRGTEDLELAYEIVQPDGSTDFFPV------ALRRSIGLVRLS 167 Query: 177 YFDSSWCSSIEAQMAELGVKINIA--RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 D + Q + L ++ R M + L K + L Sbjct: 168 GDDRNDRDLRLVQGSALDRLLSDKGLRSRMASEL---------------AKSDVKDELTS 212 Query: 235 KFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA-ITIAHGS--TG 290 + ++ L + KK L DG + + GP + LI D+ I + S G Sbjct: 213 EAKKALEDLDTAFNKKSLPDGLDLAITGGQ---GPSIASLIGLTADRNGIQLPLASWGAG 269 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350 +++ + I G API+++DE+ L+ ++ L + SQ+F+T Sbjct: 270 TRRLSALAIA-------EQNQGEAPIMIVDEVERGLEPYRQRTLVEKLQAGKSQVFVTTH 322 Query: 351 DKSVFDSLNETAKFMRISNHQALCI 375 + + ++ + Q + Sbjct: 323 SPAAISAASKAGLWYVDHMGQIGPL 347 >gi|240280367|gb|EER43871.1| Spr18 protein [Ajellomyces capsulatus H143] gi|325096563|gb|EGC49873.1| conserved hypothetical protein [Ajellomyces capsulatus H88] Length = 1160 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 78/263 (29%), Gaps = 21/263 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 I + + +F Y S + + +G NG GK+ ++ AI L G R A+ Sbjct: 127 IVRVKLRDFVTYTSAEFSPGPRLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPAE 186 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLR 121 + G +G + I+ + IN EL K Sbjct: 187 FVKHGCEEATIEIELAKGRNHRENPVIRRTIVRKGNKSTFTINGKPSSKASVLELAKSFS 246 Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 I +P A P+ + D + L + +LL Sbjct: 247 IQIDNLCQFLPQDKVAEFAALSPIELLHSTQRAAAGPQMLQWHEDLKSLRAEQKKLLAAN 306 Query: 177 YFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + +++ +M V+ + R + I + P + ++ F + Sbjct: 307 AGEREQLANLVNRQEMQREDVQRMLQR----ARIQKKIAVLERSRPVPRYQEAVQAFKEA 362 Query: 235 K-----FDQSFCALKEEYAKKLF 252 + Q L+ + A L Sbjct: 363 QRARRTLQQEHDNLENQLAPALK 385 >gi|260886534|ref|ZP_05897797.1| hypothetical ATP-binding protein [Selenomonas sputigena ATCC 35185] gi|330839624|ref|YP_004414204.1| SMC domain protein [Selenomonas sputigena ATCC 35185] gi|260863677|gb|EEX78177.1| hypothetical ATP-binding protein [Selenomonas sputigena ATCC 35185] gi|329747388|gb|AEC00745.1| SMC domain protein [Selenomonas sputigena ATCC 35185] Length = 429 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 28/45 (62%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + IK L + FR + L + F +T+ +G NG GK++IL+A++ Sbjct: 1 MYIKRLQLENFRCFEQLTIDFPKDYTVLIGGNGAGKSSILDAVAI 45 >gi|150401409|ref|YP_001325175.1| chromosome segregation protein SMC [Methanococcus aeolicus Nankai-3] gi|150014112|gb|ABR56563.1| chromosome segregation protein SMC [Methanococcus aeolicus Nankai-3] Length = 1191 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 36/177 (20%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFR 57 MTN + +++ F+++ +++L + T +G NG GK+NI++ I F+ + + R Sbjct: 1 MTN---LSEIHLKNFKSFKNVKLKIPSGFTAILGPNGSGKSNIIDGICFVLGKTSAKSLR 57 Query: 58 RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND---------- 107 + ++ + +A V +D I +++ R +++ Sbjct: 58 AGRFNELITYHKNKR-ADYAEVSLFFDNSDRKIPIDSDKIGISRKVKLKGDNNYYLIWYE 116 Query: 108 -----------VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 I+ L L + R+ ERR+ +D Sbjct: 117 ENKDNKRVEKRKKIKKSTVIDIFNKMSLCGEGLNIILQGDLIRLIEMSPRERRKTID 173 >gi|325959801|ref|YP_004291267.1| SMC domain-containing protein [Methanobacterium sp. AL-21] gi|325331233|gb|ADZ10295.1| SMC domain protein [Methanobacterium sp. AL-21] Length = 900 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 16/115 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ L + F+++ ++ FD TI +G NG GK++ILEA+SF + + + Sbjct: 1 MIIENLEMKNFKSHKDTKIDFDTGITIIMGGNGAGKSSILEAVSF-ALFKQHSSKKIEQL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNK 118 +G+ + IKL+ + R+ R + L K Sbjct: 60 ITLGN--------------VKNKLYIKLDFKSNGRTYRVTRERGKTGSKASILIK 100 Score = 43.0 bits (100), Expect = 0.086, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 56/156 (35%), Gaps = 16/156 (10%) Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS-------DLIVDYCDK 280 L D ++++ L + D + + D+ V Sbjct: 748 LEYIRDLYGKDGVQKDLRDFSRPLIEQNTRDFFEKFNFE--YSDIRLDNEYDVTVYGPAG 805 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + S GE+ V + + L + + + G +++LDE + HLD +R L ++ Sbjct: 806 ESNLDMISGGEKIAVALALRLGITKTL--SGGSLELVMLDEPTIHLDAYRRQELIDLLKR 863 Query: 341 IGS--QIFMTGTDKSVFDSLNETAKFMRISNHQALC 374 + Q+ + D + D+ + +++ + + Sbjct: 864 MSIIPQMIIVTHDSDLEDAADN---IIKVEKDEGIS 896 >gi|213405963|ref|XP_002173753.1| conserved hypothetical protein [Schizosaccharomyces japonicus yFS275] gi|212001800|gb|EEB07460.1| conserved hypothetical protein [Schizosaccharomyces japonicus yFS275] Length = 1137 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 4/112 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 ++ +++ F + +L+L F + +G NG GK+ IL + + R A+ Sbjct: 97 LQSIHLINFMCHDALKLDFGPRINFIIGHNGSGKSAILTGLVVCLGAKAASTNRGANLKT 156 Query: 64 VTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 + + G S + S G E +R+VR ND+ IR D Sbjct: 157 LIKEGRSQARVSIVISNRGPEAFRHDVYGNFITIERTVRRDSANDLKIRAQD 208 >gi|52549794|gb|AAU83643.1| chromosome assembly protein homolog [uncultured archaeon GZfos32E7] Length = 616 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASY 61 I +K + + F +Y R+ + G NG GK++IL AIS L R Sbjct: 9 PDIWLKEIILENFMSYEYARIPLKPGLNLISGPNGAGKSSILLAISVALGQIYTERSRRL 68 Query: 62 ADVTRIGSP-SFFSTFARVEGMEGLADIS 89 D+ R G + E G IS Sbjct: 69 RDLIRRGKELGRITLVFDNEAKNGKRPIS 97 >gi|167037692|ref|YP_001665270.1| chromosome segregation protein SMC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116107|ref|YP_004186266.1| chromosome segregation protein SMC [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856526|gb|ABY94934.1| chromosome segregation protein SMC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929198|gb|ADV79883.1| chromosome segregation protein SMC [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1196 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60 + +K L + F+++A + L F+ T VG NG GK+NI +AI + + R + Sbjct: 1 MYLKKLELQGFKSFADKVTLDFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV GS + F ++ +G + + + RS IN R Sbjct: 61 LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + D L +D I S +RR+ + + R+ Sbjct: 121 LKDIYELFLDTGVGKEGYSIIGQGRIDEILSAKPEDRRQIFEEAIGISKYRY 172 >gi|284032685|ref|YP_003382616.1| chromosome segregation protein SMC [Kribbella flavida DSM 17836] gi|283811978|gb|ADB33817.1| chromosome segregation protein SMC [Kribbella flavida DSM 17836] Length = 1181 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 80/217 (36%), Gaps = 30/217 (13%) Query: 11 NISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYADVTR 66 + F+++AS + F+ T VG NG GK+N+++A++++ + R DV Sbjct: 2 TLRGFKSFASATTMNFEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKSLRGGKMEDVIF 61 Query: 67 IGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIRVVDE-- 115 G+ ++ +G I T R QIN R++D Sbjct: 62 AGTSGRSPLGRAEVVLTIDNTDGALPIEYAEVTISRTMFRNGGSDYQINGQNCRLLDVQE 121 Query: 116 ------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + + + + +D I RR F++ + R E+ + R Sbjct: 122 LLSDSGIGREMHVIVGQGQLDSILRATPEGRRGFVEEAAGVLKHR-----KRKEKAI--R 174 Query: 170 NRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEM 204 TEG + + I Q+ LG + +AR + Sbjct: 175 KLESTEGNLNRLGDLITEIRRQLKPLGRQAEVARRAV 211 >gi|291456156|ref|ZP_06595546.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213] gi|291382228|gb|EFE89746.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213] Length = 628 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGF 56 + I L + F + L L F + VGDN GKT +L A+ +L +G Sbjct: 1 MYISHLQLRNFMCHHELDLDFGSGVNYLVGDNNSGKTTVLRALQYLHDGVTKGH 54 >gi|326389506|ref|ZP_08211073.1| chromosome segregation protein SMC [Thermoanaerobacter ethanolicus JW 200] gi|325994511|gb|EGD52936.1| chromosome segregation protein SMC [Thermoanaerobacter ethanolicus JW 200] Length = 1196 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60 + +K L + F+++A + L F+ T VG NG GK+NI +AI + + R + Sbjct: 1 MYLKKLELQGFKSFADKVTLNFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV GS + F ++ +G + + + RS IN R Sbjct: 61 LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + D L +D I S +RR+ + + R+ Sbjct: 121 LKDIYELFLDTGVGKEGYSIIGQGRIDEILSARPEDRRQIFEEAIGISKYRY 172 >gi|307264840|ref|ZP_07546402.1| SMC domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920098|gb|EFN50310.1| SMC domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 810 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60 + +K L + F+++A + L F+ T VG NG GK+NI +AI + + R + Sbjct: 1 MYLKKLELQGFKSFADKVTLNFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV GS + F ++ +G + + + RS IN R Sbjct: 61 LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + D L +D I S +RR+ + + R+ Sbjct: 121 LKDIYELFLDTGVGKEGYSIIGQGRIDEILSARPEDRRQIFEEAIGISKYRY 172 >gi|320547231|ref|ZP_08041524.1| SMC family domain protein [Streptococcus equinus ATCC 9812] gi|320448119|gb|EFW88869.1| SMC family domain protein [Streptococcus equinus ATCC 9812] Length = 1179 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 59/335 (17%), Positives = 120/335 (35%), Gaps = 40/335 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A + FD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEMQGFKSFADKTTIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111 DV GS ++ ++ +G A +I++E I+ +R Sbjct: 61 MPDVIFAGSENRKPLNYAQVVVNLDNSDGFIKDAKETIRVERHIYRNGDSEYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ +RR + + ++ R + + Sbjct: 121 LRDIHDLFLDTGLGRDSFSVISQGRVEEIFNSKPEDRRAVFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVEM-INALSSLIMEY 215 + L Y + +E Q A++ + + R ++ +N L I Sbjct: 179 TKLNQTQDNLDRLDDIIYELEAQVKPLERQ-AQVAKEFIGLEDERKQLHLNILVEDIQAD 237 Query: 216 VQKENFPHIKLS-LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274 +++ + LS + L ++Q KE A K + + M+++ D+ Sbjct: 238 MERLSELKEDLSEIKSNLSAYYEQRQKFEKENQALKEKRHQLSEEMAKKQA---GLVDIT 294 Query: 275 VDYCD----KAITIAHGSTGEQKVVLVGIFLAHAR 305 D + S E+K LA + Sbjct: 295 KAISDFERQMDLLALESSQKEEKKQAASTKLAELK 329 >gi|281343296|gb|EFB18880.1| hypothetical protein PANDA_014755 [Ailuropoda melanoleuca] Length = 1197 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 101/281 (35%), Gaps = 36/281 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKM 257 + ++ L + D+S LKE + +KL + K Sbjct: 233 LYIAYQFLLAEDTKDRSAEELKEMQDKVVKLQEKLSENDKK 273 >gi|300711798|ref|YP_003737612.1| chromosome segregation protein [Halalkalicoccus jeotgali B3] gi|299125481|gb|ADJ15820.1| chromosome segregation protein [Halalkalicoccus jeotgali B3] Length = 890 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 1/95 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ + ++ F+ Y L + ++ G NG GK+++LEA F G + +V Sbjct: 1 MRIERVRLTNFKPYRDTDLRLERGVSVIHGLNGSGKSSLLEACFFALYGSSALDGTLEEV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99 G +G + ++ +R+ Sbjct: 61 ITNGEEECEIELWFTHA-DGEYHVERRVRLSGERA 94 >gi|238021871|ref|ZP_04602297.1| hypothetical protein GCWU000324_01775 [Kingella oralis ATCC 51147] gi|237866485|gb|EEP67527.1| hypothetical protein GCWU000324_01775 [Kingella oralis ATCC 51147] Length = 408 Score = 64.2 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 44/214 (20%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L I +++ L L + G NG GK+N++EA++F V Sbjct: 1 MKIKRLEIKGYKSIGHLVLEDVPSLMVLAGANGAGKSNLVEALAFFGA-----------V 49 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G S F GL+DI L R+D V + + + + + +L Sbjct: 50 IRYGLDSAIKDFG------GLSDI---LPKRNDSEVSKEMLLKIEVNLNSAIFSYLSKLR 100 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + I + ++ N + + S Sbjct: 101 FSEDGNFIIEEE----------------------LSKDNNIVFISN--IENTKEAEAILS 136 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 ++ M EL KI AR ++ L++ E +++ Sbjct: 137 EYKSNMNELANKIKEARSDVAQYLNNHAYETLKE 170 >gi|15898789|ref|NP_343394.1| hypothetical protein SSO1994 [Sulfolobus solfataricus P2] gi|13815272|gb|AAK42184.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] Length = 328 Score = 64.2 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 10/137 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I F++Y F+ + +I VG NG GKTN+++A SFL R Sbjct: 2 IKRLKIKNFKSYRDSEFEFE-KVSIVVGPNGSGKTNLVDAFSFLKQLIRPLSYPPYPFIR 60 Query: 67 IG--------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELN 117 G ++G D ++ + + + + + + Sbjct: 61 WGDYKNVVFMQDENLDISFEIDGEYKGKDYHYEISLNKLQIKKEIINFDSYSMERRGNVI 120 Query: 118 KHLRISWLVPSMDRIFS 134 ++ +P +F+ Sbjct: 121 RYENKEMTIPDNLSVFN 137 >gi|324500675|gb|ADY40310.1| Structural maintenance of chromosomes protein 3 [Ascaris suum] Length = 1202 Score = 64.2 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 6/108 (5%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASY 61 + IK + IS FR+Y + +H +FVG NG GK+N AI F+ + Sbjct: 1 MHIKQVRISGFRSYRDATISDLSPKHNVFVGRNGSGKSNFFFAIEFVLSDKFSSLSSKHR 60 Query: 62 ADVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 ++ G S ++ +G E R V + N Sbjct: 61 RELIHEGIGEGSSVARVSIVLDNRDGRIVTEDTDEVVIGRQVSAKKDN 108 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345 S G++ VV + + A + AP DE+ A LD R AL ++ ++ SQ Sbjct: 1101 SGGQKTVVALALIFA-----IHKVDHAPFYFFDEVDAALDTQYREALADMIRELSEKSQF 1155 Query: 346 FMTGTDKSVFDS 357 T + S Sbjct: 1156 ITTTFRPELIAS 1167 >gi|284105821|ref|ZP_06386225.1| chromosome segregation protein SMC [Candidatus Poribacteria sp. WGA-A3] gi|283830108|gb|EFC34374.1| chromosome segregation protein SMC [Candidatus Poribacteria sp. WGA-A3] Length = 1216 Score = 64.2 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 92/283 (32%), Gaps = 39/283 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASY 61 +K+K L +S F+++ RL F T VG NGVGK+N+++AI L + R Sbjct: 1 MKLKSLLVSGFKSFPEARLDFPQGITAVVGPNGVGKSNVVDAILWVLGEQSTKALRSERM 60 Query: 62 ADVTRIGSP--------------------SFFSTFARVEGMEGLADISIKLETRDDRSVR 101 DV G+ S +E + G ++ + D Sbjct: 61 EDVIFNGTESRKPLSMAEVSLVVSDVTNQELESLAGVMEALPGNKELMVTRRLYRD-GES 119 Query: 102 CLQINDVVIRVVDELNKHL--------RISWLVPSMDRIFSGLSMERRRFLDR--MVFAI 151 IN + R+ D L ++D+I SG +RR F++ + Sbjct: 120 EYSINKIPCRLKDIRGLFLEARAGTKGHTVIEQGNIDQILSGSPQDRRTFIEEAAGIGRF 179 Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI----ARVEMINA 207 + + + + R+ +++ Q A+ AR I Sbjct: 180 KKQKTEALNKLKTTNQNLTRVRDIIAEVEKQLRTLKRQ-AQQAEHYRKLKEEARAIEILL 238 Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 L + + +L+ + + L Y + Sbjct: 239 LKHDFEDLHHQRTHVESELARLESREAELLAEEARLMASYEEA 281 >gi|145592012|ref|YP_001154014.1| SMC domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145283780|gb|ABP51362.1| SMC domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 794 Score = 64.2 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 103/296 (34%), Gaps = 52/296 (17%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61 +I+ + + FR+Y +V I G G GKT++L A+ + GR R A Sbjct: 3 RIERIELENFRSYKGRHVVSLGDVNILWGRIGAGKTSLLYAVEYALYGRQLEVKERVAKL 62 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI------RVVDE 115 D+ + + + L +I +L R D + ++IN + R ++E Sbjct: 63 LDLINVEAHE-MRVSLVLSDGGRLLEIERRLGRRGDEKI-VVRINGEELRGREAERRLEE 120 Query: 116 LNK-----HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------------------ 152 L + R+ ++ F + ++R +F ID Sbjct: 121 LLGADEDIYERLIYISHRTLEGFIYGTSQKRSLTVDRLFGIDVIDSVVRVVSSVEKSLLA 180 Query: 153 -----PRHRRRMIDFERLMRGR------NRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 ++ ++R + L + + EA ++ + R Sbjct: 181 KAEELRGRLAAYEKYKEVIRRYGGFASVKKRLEDLTKEVETLKEREAALSRDAEDLARKR 240 Query: 202 VEMINALSSL---IMEYVQKENFPHIKLSLTGFLDGKFDQS-FCALKEEYAKKLFD 253 E + L ++EY + + +++ + G FDQS L++ + + + Sbjct: 241 AEHLAKLREHESMLLEYYKTRS--ELEVLESATEGGTFDQSTVERLRDALREAVEE 294 >gi|323692111|ref|ZP_08106357.1| chromosome segregation protein SMC [Clostridium symbiosum WAL-14673] gi|323503834|gb|EGB19650.1| chromosome segregation protein SMC [Clostridium symbiosum WAL-14673] Length = 1186 Score = 64.2 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 26/219 (11%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60 + +K + I F+++A+ L F T VG NG GK+N+ +A+ L R R S Sbjct: 1 MYLKSIEIQGFKSFANRILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGGS 60 Query: 61 YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ F ++ + I + + R RS +IN R Sbjct: 61 MQDVIFSGTQMRKPQGFAYVAITLDNSDHKLPIGFDEVTISRRLYRSGESEYKINGSTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + RR++I + Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKLIAQK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 +L + LL S + +E Q+ L + AR Sbjct: 180 KLEDEKQNLLRV----SDILAELEKQVGPLARQSEAARE 214 >gi|258611594|ref|ZP_05711569.1| chromosome segregation SMC protein [Listeria monocytogenes FSL N3-165] gi|258601612|gb|EEW14937.1| chromosome segregation SMC protein [Listeria monocytogenes FSL N3-165] Length = 604 Score = 64.2 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 >gi|238923873|ref|YP_002937389.1| chromosome segregation protein SMC [Eubacterium rectale ATCC 33656] gi|238875548|gb|ACR75255.1| chromosome segregation protein SMC [Eubacterium rectale ATCC 33656] Length = 1186 Score = 64.2 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 36/287 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A+ + F T VG NG GK+N+ +A+ L + R AS Sbjct: 1 MYLKSLEVQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAS 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A V +D S+ ++ + R + IN R Sbjct: 61 MQDVIFAGTENRKPLGYAYVAITLDNSDHSLAIDFNEVTVARRVYRSGESEYLINGNPCR 120 Query: 112 V--VDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + V EL K +DRI SG ERR D + + +R++ + Sbjct: 121 LKEVSELFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFDEAAGIVKFK-KRKLTAQK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM----INALSSLIM 213 +L R L+ + +E Q+ +E R E+ +N Sbjct: 180 KLDNERENLVRVN----DILTELERQVGPLQRQSEKAHTYLKKREELKNYDVNMFLLESA 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + K ++ + + ++ ++K EY + D ++MD Sbjct: 236 RIETELKSADEKYTIADDELKETNATYESIKAEYERLGNDMQQMDER 282 >gi|168493168|ref|ZP_02717311.1| chromosome segregation protein SMC [Streptococcus pneumoniae CDC3059-06] gi|183576749|gb|EDT97277.1| chromosome segregation protein SMC [Streptococcus pneumoniae CDC3059-06] Length = 1179 Score = 64.2 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 113/289 (39%), Gaps = 35/289 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ S ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKSEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK--MDSMSR 262 + +L+ L + Q L+EE + L R+ D M++ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQDLQDEMAK 285 >gi|86610360|ref|YP_479122.1| chromosome segregation protein SMC [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558902|gb|ABD03859.1| putative chromosome segregation protein SMC [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1188 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 50/236 (21%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + ++ F+++ ++ L T+ G NG GK+NIL+ I F LS RG R Sbjct: 1 MYIKRIELTRFKSFGSTTSLPLLPGFTVISGPNGSGKSNILDGILFALGLSSSRGMRAER 60 Query: 61 YADVTRIGS-------PSFFSTFARV----EGMEGLADISIKLETRDDRSVRCLQ----- 104 D+ GS + S + +G +S +L R ++ + Sbjct: 61 LLDLVHSGSLNGNRQVETHVSVTFELGPGEDGQPREWKVSRRLRVRPGKAEELARDSGTE 120 Query: 105 -----------INDVVIRVVDELNKHLRISWLVP---------SMDRIFSGLSMERRRFL 144 INDV + EL++ L + P + I S ERR+ + Sbjct: 121 SFSLPYTSTFYINDVPC-TLSELHEQLEAMHIYPNGYNVVLQGDVTSIISMHPKERRQII 179 Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 D + + F+R + N L IE + G ++ Sbjct: 180 DELAG---------VATFDRKIAQANSKLEAVREQIERFRLIEQEWQAQGERLLKE 226 >gi|303242100|ref|ZP_07328591.1| chromosome segregation protein SMC [Acetivibrio cellulolyticus CD2] gi|302590394|gb|EFL60151.1| chromosome segregation protein SMC [Acetivibrio cellulolyticus CD2] Length = 1190 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 106/289 (36%), Gaps = 38/289 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A + L F++ T VG NG GK+NI +AI L + R Sbjct: 1 MHLKRLEIQGFKSFADKINLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQSAKTLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ FA V AD S+ L+ + R + IN R Sbjct: 61 MEDVIFAGTEHRKQLGFAEVSLTIDNADHSLPLDYSEVTITRRVYRSGESEYLINKTSCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L +D I S S ERR + I R++ + Sbjct: 121 LKDVYELFLDTGIGKDGYSIIGQGRVDEILSTKSEERRHLFE-EASGIMKYKVRKLEAEK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE--AQMAELGVKINIARVEM----INALSSLIMEYVQ 217 +L R L+ + + +E Q +++ + R + +N I ++ + Sbjct: 180 KLELTRQNLVRINDIITELETQLEPLRQQSDVAKRYLNLRDTLKELEVNVYIENISKFKE 239 Query: 218 KE-NFPHIKLSLTGFLDGK---------FDQSFCALKEEYAKKLFDGRK 256 K F +S+ +D +Q L +E KL + R+ Sbjct: 240 KIKEFEESYISIKDNIDSDNKKLEDITLLNQKKLVLLKELETKLDNSRQ 288 >gi|290985195|ref|XP_002675311.1| structural maintenance of chromosome 5 [Naegleria gruberi] gi|284088907|gb|EFC42567.1| structural maintenance of chromosome 5 [Naegleria gruberi] Length = 900 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 16/118 (13%) Query: 3 NRIK---IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--- 56 +++ I + I F Y + +G NG GK++I+ AI G Sbjct: 63 PKMRDGSIVRIKIHNFMTYDDCEFFPGPGLNLVLGPNGTGKSSIVGAICV--GLAGHTKL 120 Query: 57 --RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL---QINDVV 109 R + +D+ + G F +E ++ IK ++ + ++N Sbjct: 121 LGRASRVSDMIKHGKSEAF---VEIELKAAKKNVVIKRSFHLNKDNKESTDWRVNGTK 175 >gi|148993856|ref|ZP_01823258.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP9-BS68] gi|168489074|ref|ZP_02713273.1| chromosome segregation protein SMC [Streptococcus pneumoniae SP195] gi|147927681|gb|EDK78706.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP9-BS68] gi|183572487|gb|EDT93015.1| chromosome segregation protein SMC [Streptococcus pneumoniae SP195] gi|301794329|emb|CBW36754.1| putative chromosome partition protein [Streptococcus pneumoniae INV104] gi|332073585|gb|EGI84064.1| chromosome segregation protein SMC [Streptococcus pneumoniae GA17570] Length = 1179 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 61/281 (21%), Positives = 109/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ S ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKSEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|291527953|emb|CBK93539.1| condensin subunit Smc [Eubacterium rectale M104/1] Length = 1186 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 36/287 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A+ + F T VG NG GK+N+ +A+ L + R AS Sbjct: 1 MYLKSLEVQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAS 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A V +D S+ ++ + R + IN R Sbjct: 61 MQDVIFAGTENRKPLGYAYVAITLDNSDHSLAIDFNEVTVARRVYRSGESEYLINGNPCR 120 Query: 112 V--VDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + V EL K +DRI SG ERR D + + +R++ + Sbjct: 121 LKEVSELFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFDEAAGIVKFK-KRKLTAQK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM----INALSSLIM 213 +L R L+ + +E Q+ +E R E+ +N Sbjct: 180 KLDNERENLVRVN----DILTELERQVGPLQRQSEKAHTYLKKREELKTYDVNMFLLESA 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + K ++ + + ++ ++K EY + D ++MD Sbjct: 236 RIETELKSADEKYAIADDELKETNATYESIKAEYERLGNDMQQMDER 282 >gi|167035148|ref|YP_001670379.1| SMC domain-containing protein [Pseudomonas putida GB-1] gi|166861636|gb|ABZ00044.1| SMC domain protein [Pseudomonas putida GB-1] Length = 574 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 51/372 (13%), Positives = 131/372 (35%), Gaps = 38/372 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + FRN+A + + ++T+ +G N VGKTN++ A+ L + S A++ Sbjct: 1 MLITRVVLKGFRNFADATVGLE-RNTLIIGANNVGKTNLVYALRLL-LDKSL---SDAEI 55 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S S+ ++ I+I + +V + L ++ Sbjct: 56 EPMESDFHISSAGKIS---DHLSITIYFSEVSEDAV------------LASLKGNIT--- 97 Query: 125 LVPSMDRIFSGLSMERRRF-LDRMVFAIDPRHRRRMIDFERLMRGRN-RLLTEGYFDSSW 182 + +RR + A P + ++ N R + + Sbjct: 98 ---DDSCFVLQYTADRRSLTYQIKIGATKPSLVEIPSRY--YLKHINLRYVKSRRDLEKY 152 Query: 183 CSSIEAQMAELGVKINIARVEMINALS-SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241 +S + Q+ +L ++ + + I + ++ N L ++ Sbjct: 153 INSEKRQLLKLSLENRSDDESKSDHRQMARIGKALEAINGRIRNLHYVKGATDSVNEELQ 212 Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 L ++++ ++ S + L + ++ G G +L+ ++ Sbjct: 213 KLAHDFSE-----YEVKLDSGAIQVQQFIDSLRLGASTSGASVMLGGDGRNNQILMALWK 267 Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSVFDSLNE 360 A ++ + ++E AHL ++ L ++ D+ Q F+T + Sbjct: 268 AKSQREHDPDSEVVFYCVEEPEAHLHPHQQRKLADYLINDLPGQTFITSHSPQITARYTP 327 Query: 361 TAKF-MRISNHQ 371 ++ ++++ + Sbjct: 328 SSIVHLKVTGGR 339 >gi|254976971|ref|ZP_05273443.1| putative conjugative transposon DNA recombination protein [Clostridium difficile QCD-66c26] gi|255651889|ref|ZP_05398791.1| putative conjugative transposon DNA recombination protein [Clostridium difficile QCD-37x79] gi|260687153|ref|YP_003218287.1| putative conjugative transposon DNA recombination protein [Clostridium difficile R20291] gi|306520352|ref|ZP_07406699.1| putative conjugative transposon DNA recombination protein [Clostridium difficile QCD-32g58] gi|260213170|emb|CBE04624.1| putative conjugative transposon DNA recombination protein [Clostridium difficile R20291] Length = 540 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I+ L I F+ ++ + F+ I VG+NG GK+ ILEAI+ + G + + Sbjct: 1 MSIRKLKIKNFKCFSDWFIVDFENGINILVGNNGTGKSTILEAINLVLTGTYHGKNIRNE 60 Query: 64 VTRI 67 +T+ Sbjct: 61 LTQY 64 >gi|73971498|ref|XP_538759.2| PREDICTED: similar to Structural maintenance of chromosome 2-like 1 protein (Chromosome-associated protein E) (hCAP-E) (XCAP-E homolog) isoform 1 [Canis familiaris] Length = 1191 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 101/281 (35%), Gaps = 36/281 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNSRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKIMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKM 257 + ++ L + ++S LKE + +KL + K Sbjct: 233 LYIAYQFLLAEDTKERSAEELKEMQDKVVKLQEKLSENDKK 273 >gi|315647373|ref|ZP_07900486.1| hypothetical protein PVOR_18699 [Paenibacillus vortex V453] gi|315277575|gb|EFU40904.1| hypothetical protein PVOR_18699 [Paenibacillus vortex V453] Length = 599 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 63/382 (16%), Positives = 128/382 (33%), Gaps = 61/382 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + I FRN+ + + ++ +G N +GK+N++ A+ L + S +D+ Sbjct: 1 MHISNIKIKGFRNFNEANVNLKQK-SLIIGSNDIGKSNLIYALRLLLDKK----ISDSDL 55 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 S F + I IK E+ + D VI V + + Sbjct: 56 ELKDSD-----FHVYDESNNEIFIQIKFESVVE---------DCVIGKVGKYVNSEGELF 101 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAID--------PRHRRRMI-DFERLMRGRNRLLTE 175 L + G S E + + + + + + D+ R N + + Sbjct: 102 LAYE---VKRGESGE--KSYQFYIGQREDDLQPIESRYYLKVLNMDYIESSRELNSYIRK 156 Query: 176 GYFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + S Q+ + KI + IN L++ I KLS Sbjct: 157 EKKNLLLESRKQRTKQIVQSDDKITKKIEKSINILNNRIT-----------KLSYINSAT 205 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC----DKAITIAHGST 289 + +L + +D + G D I +++ G Sbjct: 206 SSLNDELLSLSFHHIAS-----TIDFDTG----GIDVEDFINSVNLVSKVNGKSLSVGGD 256 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMT 348 G + + + A R++ +T I ++E AHL ++ L + + + SQ+ +T Sbjct: 257 GRNNQIYLALRTAKNRILDDTPLEVTICCIEEPEAHLHPHQQRRLSKYLVESLRSQVLIT 316 Query: 349 GTDKSVFDSLNETAKFMRISNH 370 + + + +R+ N Sbjct: 317 SHSPQIASEFSPDS-IIRLYNE 337 >gi|284175980|ref|ZP_06389949.1| hypothetical protein Ssol98_15165 [Sulfolobus solfataricus 98/2] Length = 363 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 10/137 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 IK L I F++Y F+ + +I VG NG GKTN+++A SFL R Sbjct: 2 IKRLKIKNFKSYRDSEFEFE-KVSIVVGPNGSGKTNLVDAFSFLKQLIRPLSYPPYPFIR 60 Query: 67 IG--------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELN 117 G ++G D ++ + + + + + + Sbjct: 61 WGDYKNVVFMQDENLDISFEIDGEYKGKDYHYEISLNKLQIKKEIINFDSYSMERRGNVI 120 Query: 118 KHLRISWLVPSMDRIFS 134 ++ +P +F+ Sbjct: 121 RYENKEMTIPDNLSVFN 137 >gi|300024389|ref|YP_003757000.1| chromosome segregation protein SMC [Hyphomicrobium denitrificans ATCC 51888] gi|299526210|gb|ADJ24679.1| chromosome segregation protein SMC [Hyphomicrobium denitrificans ATCC 51888] Length = 1153 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +KI L I F+++ LV + T VG NG GK+N+LEA+ ++ S + R A+ Sbjct: 1 MKITRLRILGFKSFVDPTELVIEPGLTGVVGPNGCGKSNLLEALRWVMGESSHKSMRAAA 60 Query: 61 YADVTRIGSPS-----------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDV 108 DV GS F AR E + +I++ R +R + +IN Sbjct: 61 MDDVIFSGSGGRPERQSAEVTMFLDNSARRAPAEFNDNDTIEITRRIEREAGSAYRINGR 120 Query: 109 VIRVVD--ELNKHLRISWLVPSMDR------IFSGLSMERRRFLDR 146 +R D L + P++ R + + RRR L+ Sbjct: 121 EVRARDVKVLFEDAATGARSPALVRQGQIGELVNAKPEHRRRILED 166 >gi|20807912|ref|NP_623083.1| chromosome segregation ATPase [Thermoanaerobacter tengcongensis MB4] gi|20516479|gb|AAM24687.1| Chromosome segregation ATPases [Thermoanaerobacter tengcongensis MB4] Length = 1189 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 21/172 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60 + +K L + F+++A + L F+ T VG NG GK+NI +AI + + R + Sbjct: 1 MYLKKLELYGFKSFADKVSLNFEKGITAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV GS F ++ +GL + + + RS IN R Sbjct: 61 LEDVIFAGSETRKPLGFCEINLTLDNSDGLLPFDYNEVVITRKIFRSGESEFFINKTPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + D + K +D I S ERR L+ + R+ Sbjct: 121 LKDVHELFLDTGIGKEGYSVIGQGKIDEILSAKPEERRLILEEAIGISKYRY 172 >gi|296273057|ref|YP_003655688.1| SMC domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097231|gb|ADG93181.1| SMC domain protein [Arcobacter nitrofigilis DSM 7299] Length = 789 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 94/268 (35%), Gaps = 33/268 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L + F+ Y + L FD +G NG GK+ I EAI + F+ Y ++ Sbjct: 1 MILCKLKLENFKRYKTFELDFDEGLVGIIGKNGSGKSTIFEAI-LFALYGEFKDRGYKEI 59 Query: 65 TRI-GSPSFFSTFARVEGMEGLADISIKLETRDD--RSVRCLQINDVVIRVVD------- 114 R + + ++ + + E R + L N +I Sbjct: 60 VRNANATDKDAVVVELDFEFDSIEYKVVREFRGKALSANAKLYKNGELITSGAKEVTTSI 119 Query: 115 -ELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 +L K + ++L + + + +R+R + +++ + E+ + Sbjct: 120 MKLTKMSKEAFLHTLFASQKELTSLSNSKPEDRKRMIRKLLDLEKIDYI------EKELI 173 Query: 168 GRNRLLTE--GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 ++R L F S+ + Q + +I A+ + E +Q + Sbjct: 174 EKSRELKREISAFAEVLLSAEDIQTKK--EQIKSN-----EAIKKTLNEELQTQTKQIDS 226 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFD 253 L L K +SF KE K L + Sbjct: 227 LKLKELDIKKELESFVKTKEAKQKALSE 254 Score = 36.4 bits (83), Expect = 8.3, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 16/163 (9%) Query: 207 ALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 L + + ++ IKLSL+ F L+ K + ++ G + Sbjct: 630 QLKKVQTKKDDLIDYDKIKLSLSEFKTKLNSKVAPRISDIASNMYAQITKG-------KY 682 Query: 264 TLIGPHRS-DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI--LLLD 320 I D + K I S GE + + + +A ++ +S +G + I L D Sbjct: 683 QHIEVSNDFDFYIYDEGKKYPIERFSGGEIDLANLVLRIAISKTLSELSGSSQIGFLAFD 742 Query: 321 EISAHLDEDKRNALFR---IVTDIGSQIFMTGTDKSVFDSLNE 360 E+ DE +R + ++ + QIF+ + + + + Sbjct: 743 EVFGSQDEARRMEILEAFHMIKEQYRQIFLISHEMEIKEMFEK 785 >gi|291524527|emb|CBK90114.1| condensin subunit Smc [Eubacterium rectale DSM 17629] Length = 1186 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 36/287 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A+ + F T VG NG GK+N+ +A+ L + R AS Sbjct: 1 MYLKSLEVQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAS 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A V +D S+ ++ + R + IN R Sbjct: 61 MQDVIFAGTENRKPLGYAYVAITLDNSDHSLAIDFNEVTVARRVYRSGESEYLINGNPCR 120 Query: 112 V--VDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + V EL K +DRI SG ERR D + + +R++ + Sbjct: 121 LKEVSELFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFDEAAGIVKFK-KRKLTAQK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM----INALSSLIM 213 +L R L+ + +E Q+ +E R E+ +N Sbjct: 180 KLDNERENLVRVN----DILTELERQVGPLQRQSEKAHTYLKKREELKNYDVNMFLLESA 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + K ++ + + ++ ++K EY + D ++MD Sbjct: 236 RIETELKSADEKYAIADDELKETNATYESIKAEYERLGNDMQQMDER 282 >gi|330508286|ref|YP_004384714.1| chromosome segregation protein SMC [Methanosaeta concilii GP-6] gi|328929094|gb|AEB68896.1| chromosome segregation protein SMC [Methanosaeta concilii GP-6] Length = 1171 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 16/151 (10%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + + F+++ S+R+ G NG GK+NI++A+ F LS R R Sbjct: 1 MYIKEVELKNFKSFGKSIRVPLKNDFVTVTGPNGSGKSNIVDALLFALCLSSSRAMRAER 60 Query: 61 YADVTRIG----SPSFFSTFARVEG-------MEGLADISIKLETRDDRSVRCLQINDVV 109 D+ G +P F R++ + ++S K++ D+ N Sbjct: 61 LPDLIYRGDNGKNPDFAQVIVRLDNTSRHFPLDQDTIEVSRKIKINRDKYASSYSFNGKS 120 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMER 140 EL L + + P I + R Sbjct: 121 CGQA-ELLDLLAKAGITPESYNIVMQGDVTR 150 >gi|320197272|gb|EFW71888.1| hypothetical protein EcoM_00468 [Escherichia coli WV_060327] Length = 566 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 52/357 (14%), Positives = 122/357 (34%), Gaps = 53/357 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ + I FRNY + F+ + +G N VGKTN+L AI L + Sbjct: 1 MRIETVYIKGFRNYCDAVINFNE-TNLIIGANDVGKTNLLYAIRLLL---------DKSL 50 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + F E + +I I ++ D + + E S Sbjct: 51 SELDLEPKSNDFHVNSTGEQVENIEITIKFTDVSEDAVISKLGGYVSDEGETYIKYLASS 110 Query: 125 LVPSMDRIFSGL----SMERRRFLDRMVFAIDPRHRRRMIDFERL-------MRGRNRLL 173 L + S RF + + +R + + ++ + R Sbjct: 111 LTMDYKILLSHEHNNFDEVPNRFYLKCLSLRYINSQRDLEKYIKIEKKHLLRLAQEVRSE 170 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + D + + + + E+ K+ + + + + + E ++K ++ H +L++ Sbjct: 171 KDTENDGAVFTELNKLLTEVNEKV--KGISYVASATEELNEELRKLSYTHDRLTV----- 223 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 + D + +++ +KL + L++ Sbjct: 224 -QLDTGAIGI-DQFIEKLELS-----------ANTNGKKLMLGGDGFNNQ---------- 260 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTG 349 +L+ ++ A + + I ++E AHL ++ L ++ + Q +T Sbjct: 261 -ILLALWKAKSVREHDVESEVVIYCIEEPEAHLFPHQQRKLAAYLIDKLPGQAIVTS 316 >gi|197303072|ref|ZP_03168120.1| hypothetical protein RUMLAC_01799 [Ruminococcus lactaris ATCC 29176] gi|197297927|gb|EDY32479.1| hypothetical protein RUMLAC_01799 [Ruminococcus lactaris ATCC 29176] Length = 1186 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 82/224 (36%), Gaps = 27/224 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ ++ F T VG NG GK+N+ +A+ L + R S Sbjct: 1 MYLKSIEVQGFKSFANKIKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNSDHKLPVEYGEVTVTRKLYRSGESEYLINGTACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ + + Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKYKRRKNLS-LK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207 +L R L +E Q+ L + AR E + Sbjct: 180 KLEEERQNLTRVN----DILQELEKQLGPLERQSETAR-EYLKK 218 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 100/282 (35%), Gaps = 25/282 (8%) Query: 80 EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139 E E +I ++ + + Q N +R+ ++L+KH+ +D+ L+ + Sbjct: 877 ESKELFEEIRQEIHGQTSKREELNQKNKDFLRLREDLSKHIA------DLDKETFRLNSQ 930 Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199 + + + ++ + + M RN LT+ ++ ++ +LG Sbjct: 931 KEGYEEASEKQMNYMWEEYELTYNHAMELRNEKLTDLAEMKRQIQVLKNEIRKLGTVNVN 990 Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 A + N Q ++ + SL ++ E++A+ + ++ Sbjct: 991 AIEDYKNVSERYTFLKGQHDDLVEAEASLVQIIEELDTAMRKQFTEQFARIAKEFNEVFR 1050 Query: 260 MS----RRTLIGPHRSDLI---VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLI 307 + TL D++ + + S GE+ + + + A Sbjct: 1051 QLFGGGKGTLELMEDEDILEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA----- 1105 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 +P LLDEI A LD++ + + + + +Q + Sbjct: 1106 IQNLKPSPFCLLDEIEAALDDNNVDRYAQYLHKLTKHTQFIV 1147 >gi|257063722|ref|YP_003143394.1| chromosome segregation protein SMC [Slackia heliotrinireducens DSM 20476] gi|256791375|gb|ACV22045.1| chromosome segregation protein SMC [Slackia heliotrinireducens DSM 20476] Length = 1174 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 102/279 (36%), Gaps = 29/279 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L + F+++A + + T VG NG GK+NI +A+ ++ R R + Sbjct: 1 MYLKSLVLKGFKSFADRQVISLEPGITAIVGPNGSGKSNISDAVLWVLGERNPKHLRGQA 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS + S A VE + +D ++ ++ + R + IN R Sbjct: 61 MEDVIFAGSSARKSVGVAEVELVLDNSDGTLPVDYAEVSLTRRMYRSGESEYLINGAPAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +D L ++D I S ++RR ++ + + R+ Sbjct: 121 RMDFMDILHDTGLGTGTHSIIGQGNLDAILSSKPIDRRALIEEAAGVLKHKQRKERSA-R 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 +L N LL + +E Q+ L K R E LSS + + Sbjct: 180 KLASMDNHLLRV----KDVAAEVERQLKPLARK--AKRAEAYQGLSSELAQLNLLLAVDD 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 ++ L DG + A K+ + + + + Sbjct: 234 LR-RLQRAWDGALKEETEAAALIDVKRFELEQSNEKLEK 271 >gi|119173068|ref|XP_001239047.1| hypothetical protein CIMG_10069 [Coccidioides immitis RS] Length = 1194 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 21/224 (9%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62 I + +S F Y S L + + +G NG GK+ ++ AI L G R A Sbjct: 115 AIVRIKLSNFVTYTSAELRPGPRLNLVIGPNGTGKSTLVCAICLGLGEGPQHLGRAKDAA 174 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHL 120 + + G + + G +I I + D + +N V + V EL + L Sbjct: 175 EYIKHGCREA-TIEIELAAPPGKRNIVIARVIKRDGNKSTFTVNGDQVPGKRVRELARSL 233 Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI-DFERLMRGRNRLLT 174 I +P ++ ++ L A PR R D +RL + +L Sbjct: 234 SIQIDNLCQFLPQD-KVSEFAALTPVELLQSTQRAAAPREVTRWYEDLKRLREQQKKLQV 292 Query: 175 EGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSS 210 E ++E + ++ R++ + + Sbjct: 293 ENRQQQEVLQNLERRQENQREEVERMKHRAAVKKRLKYLELMRP 336 >gi|294101613|ref|YP_003553471.1| SMC domain protein [Aminobacterium colombiense DSM 12261] gi|293616593|gb|ADE56747.1| SMC domain protein [Aminobacterium colombiense DSM 12261] Length = 1139 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 104/306 (33%), Gaps = 48/306 (15%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + I+ L + F+++ S L F T VG NG GK+NIL+ + ++ R Sbjct: 1 MFIERLRLKGFKSFGGSHELTFSPGFTAIVGPNGSGKSNILDGLRWVLGEGSPNCLRITR 60 Query: 61 YADVTRIGS---PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 +D+ GS P+ T + E +IK E + L ++ + IR+ D Sbjct: 61 QSDLLFQGSISLPTATETEVSLCIREDPKICTIKREFSPETGT-SLFVDGMRIRLQD--L 117 Query: 118 KHLRISWLVPSMDRIFSGL----------SMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 ++ W + F G +RR L+ +F ID + + Sbjct: 118 DDVKRQWHMEGEQFAFIGQGEVAEAIHHRPQQRRSILE-ALFGID--------QYRKKRE 168 Query: 168 GRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEMINALSSLIMEYV--QKE 219 N+ L + + ++ +++ V I +++ L Y ++ Sbjct: 169 DANQKLKFASEELARLETLVSELTSRRDEIAAMVTIAEKARRLLDELDEKRRGYYFSRRA 228 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEE--------YAKKLFDGRKMDS---MSRRTLIGP 268 S + + A + E + + LF+ + R +G Sbjct: 229 FLERELYSFQSRIHALERRKNRAAEWETIWKEGLSFYQSLFNSYEQQKKVHEERTESLGF 288 Query: 269 HRSDLI 274 R L Sbjct: 289 QRETLR 294 >gi|238854773|ref|ZP_04645103.1| chromosome segregation protein SMC [Lactobacillus jensenii 269-3] gi|260664005|ref|ZP_05864858.1| chromosome segregation protein SMC [Lactobacillus jensenii SJ-7A-US] gi|282933851|ref|ZP_06339199.1| chromosome segregation protein SMC [Lactobacillus jensenii 208-1] gi|238832563|gb|EEQ24870.1| chromosome segregation protein SMC [Lactobacillus jensenii 269-3] gi|260561891|gb|EEX27860.1| chromosome segregation protein SMC [Lactobacillus jensenii SJ-7A-US] gi|281301940|gb|EFA94194.1| chromosome segregation protein SMC [Lactobacillus jensenii 208-1] Length = 1189 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L ++ F+++A ++ F T VG NG GK+NI EAI ++ S + R ++ Sbjct: 1 MPLTELTLTGFKSFAEKTKIKFGDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGSN 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS A VE + + ++ + R + N Sbjct: 61 MKDVIFAGSQYRTPMNHAEVELVFDNKNRALNFDADRVTVARRILRNG 108 >gi|149738962|ref|XP_001504048.1| PREDICTED: structural maintenance of chromosomes 2 [Equus caballus] Length = 1191 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 101/281 (35%), Gaps = 36/281 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIVLEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKM 257 + ++ L + ++S LKE + ++L + K Sbjct: 233 LYIAYQFLLAEDTKERSAEELKEMQDKIVKLQEELSENDKK 273 >gi|320037006|gb|EFW18944.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira] Length = 1194 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 21/224 (9%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62 I + +S F Y S L + + +G NG GK+ ++ AI L G R A Sbjct: 115 AIVRIKLSNFVTYTSAELRPGPRLNLVIGPNGTGKSTLVCAICLGLGEGPQHLGRAKDAA 174 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHL 120 + + G + + G +I I + D + +N V + V EL + L Sbjct: 175 EYIKHGCREA-TIEIELAAPPGKRNIVIARVIKRDGNKSTFTVNGDQVPGKRVRELARSL 233 Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI-DFERLMRGRNRLLT 174 I +P ++ ++ L A PR R D +RL + +L Sbjct: 234 SIQIDNLCQFLPQD-KVSEFAALTPVELLQSTQRAAAPREVTRWYEDLKRLREQQKKLQV 292 Query: 175 EGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSS 210 E +E + ++ R++ + + Sbjct: 293 ENRQQQEVLQDLERRQENQREEVERMKHRAAVKKRLKYLELMRP 336 >gi|191165831|ref|ZP_03027669.1| ATP binding protein [Escherichia coli B7A] gi|227883873|ref|ZP_04001678.1| ATP binding protein [Escherichia coli 83972] gi|190904155|gb|EDV63866.1| ATP binding protein [Escherichia coli B7A] gi|227839151|gb|EEJ49617.1| ATP binding protein [Escherichia coli 83972] gi|307555798|gb|ADN48573.1| ATP binding protein [Escherichia coli ABU 83972] Length = 465 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++I L++ FR + L + FD TI V NG GKT +L+A+ Sbjct: 1 MRIDKLSLLNFRCFKQLDITFDEHITILVAPNGAGKTTVLDAVRL 45 >gi|218132445|ref|ZP_03461249.1| hypothetical protein BACPEC_00304 [Bacteroides pectinophilus ATCC 43243] gi|217992555|gb|EEC58557.1| hypothetical protein BACPEC_00304 [Bacteroides pectinophilus ATCC 43243] Length = 1191 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 26/222 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ + F+ T VG NG GK+N+ +A+ L + R Sbjct: 1 MYLKSIEVQGFKSFANKIVFEFNNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGTK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ G+ F ++ + + R R IN R Sbjct: 61 MEDIIFAGTQMRKPVGFAYVAITLDNSDHALPVDYDEVVVARRVFRSGESEYMINGNTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + RR+ + Sbjct: 121 LKDVSELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKAAAVK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 +L R L+ S +E Q+ LG + AR ++ Sbjct: 180 KLENERANLVRVN----DILSELEKQVGPLGKQSEKARQYLL 217 >gi|303324093|ref|XP_003072034.1| SMC family, C-terminal domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240111744|gb|EER29889.1| SMC family, C-terminal domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 1194 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 21/224 (9%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62 I + +S F Y S L + + +G NG GK+ ++ AI L G R A Sbjct: 115 AIVRIKLSNFVTYTSAELRPGPRLNLVIGPNGTGKSTLVCAICLGLGEGPQHLGRAKDAA 174 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHL 120 + + G + + G +I I + D + +N V + V EL + L Sbjct: 175 EYIKHGCREA-TIEIELAAPPGKRNIVIARVIKRDGNKSTFTVNGDQVPGKRVRELARSL 233 Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI-DFERLMRGRNRLLT 174 I +P ++ ++ L A PR R D +RL + +L Sbjct: 234 SIQIDNLCQFLPQD-KVSEFAALTPVELLQSTQRAAAPREVTRWYEDLKRLREQQKKLQV 292 Query: 175 EGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSS 210 E +E + ++ R++ + + Sbjct: 293 ENRQQQEVLQDLERRQENQREEVERMKHRAAVKKRLKYLELMRP 336 >gi|50308365|ref|XP_454184.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643319|emb|CAG99271.1| KLLA0E05303p [Kluyveromyces lactis] Length = 1098 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK + ++ F +++ L + VG+NG GK+ IL AI+ + R S D Sbjct: 64 IKEIKLTNFMCHSNFSLRLGPRLNFIVGNNGSGKSAILTAITIGLGAKATTTNRGTSLKD 123 Query: 64 VTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRC------LQINDVVIRVVDEL 116 + + G S EG+ E R +R++R I + V + Sbjct: 124 LIKQGCNTSKIVIVLCNEGLNSFEPGVYGKEIRIERTIRREGYSGSFSIRSEANKEVSDK 183 Query: 117 NKHLRISW 124 + L + Sbjct: 184 KRDLEVIL 191 >gi|74318701|ref|YP_316441.1| hypothetical protein Tbd_2683 [Thiobacillus denitrificans ATCC 25259] gi|74058196|gb|AAZ98636.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 478 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 ++I L ++ FR + L F + VG NGVGKT +LEA+ L Sbjct: 1 MQINRLTLTNFRGLTNSVLDFAPGFNLVVGVNGVGKTAVLEALRIL 46 >gi|76801408|ref|YP_326416.1| chromosome segregation protein [Natronomonas pharaonis DSM 2160] gi|76557273|emb|CAI48849.1| DNA double-strand break repair rad50 ATPase [Natronomonas pharaonis DSM 2160] Length = 897 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 96/302 (31%), Gaps = 54/302 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ + + + F+ YA L T+ G NG GK+++LEA F G + D Sbjct: 1 MRFERIRLRNFKCYAETELSLREGVTVIHGVNGSGKSSLLEACFFALYGSAAIDGTLDDA 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI----NDVVIRVVD------ 114 + G G I ++ R + + N V +V D Sbjct: 61 IANDADEMSIELWFTHGG-GEYRIERNIKRRGGSAQTTTCLLETPNGTVEQVTDVEAHIE 119 Query: 115 ELNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMV-FAIDPRHRRRMID----FE 163 EL + +++ + R + + ER+ +D ++ +R R D E Sbjct: 120 ELLRMDADAFVNCAYVRQGEVNKLINATPSERQDMIDSLLQLGTLEEYRERASDARVGVE 179 Query: 164 RLMRGRNRLL---------TEGYFDSSWCSSIEAQMAELGVKI----------------- 197 R++ + LL E +++ +++EL I Sbjct: 180 RVLSQQETLLEDKRATIAEKEQKSLHDRLNALRTELSELKSDIETKEEERETAVETKQEA 239 Query: 198 ------NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251 R E I L + I E + + G ++ L+E L Sbjct: 240 VEVLEAYEQRREEIETLEADIEELTEDIAAAESERDALGERLRSLRETTETLRERRDDAL 299 Query: 252 FD 253 + Sbjct: 300 AE 301 >gi|297623774|ref|YP_003705208.1| SMC domain-containing protein [Truepera radiovictrix DSM 17093] gi|297164954|gb|ADI14665.1| SMC domain protein [Truepera radiovictrix DSM 17093] Length = 1131 Score = 63.8 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 6/116 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRAS 60 +++ L + F+++A L F T VG NG GK+N+++A+ + + G FR Sbjct: 1 MRLTSLTLQGFKSFADRTTLEFTEGVTAIVGPNGSGKSNLIDALRWATGGGRAEAFRAGD 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVD 114 ++ GS S FA V+ ++ + RS L++ R +D Sbjct: 61 KTELIFHGSAGKRSLGFAEVQLEFEREGETLCVSRTLLRSGESQLRLGGRAARFLD 116 >gi|289625663|ref|ZP_06458617.1| overcoming lysogenization defect protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869396|gb|EGH04105.1| overcoming lysogenization defect protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 594 Score = 63.8 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 54/379 (14%), Positives = 104/379 (27%), Gaps = 65/379 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRR 58 + + + + FR+ L + + + +G+N VGKTN+ A+ S R + Sbjct: 1 MHLSRIVVQNFRSLKYLDVPIASGSSAIIGENSVGKTNLFHALRICLDVQLSSTYRSLLK 60 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADIS--------------IKLETRDDRSVRCLQ 104 +G P +G + + R ++VR Sbjct: 61 DDIHSQVNLGEPFQVLIGVEFSSFQGNENQEALLHGAQIAHDRARLFYRFRPRKAVREEL 120 Query: 105 INDVVIRVVD------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH--- 155 + R + EL + F + Sbjct: 121 SRGELQRQLTLEDYSWELAGGGNPQV----DLADIVWSDELPALGASSVNFQYLQSYLVV 176 Query: 156 -RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE--LGVKINIARVEMINALSSLI 212 + D E ++ R L + + + I R I ++ I Sbjct: 177 FLPALRDVEADLQSRRSTLARLIDAFQIDEQEQNALVQAVHVANQQIERSPTIQGIAESI 236 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 ++ + P +L + L QS R LI +D Sbjct: 237 DSAFERISGPAFRLGVELGLSSATFQSIL---------------------RNLIVLLSND 275 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP--ILLLDEISAHLDEDK 330 L+ + + + +L L G A ILL++E AHL Sbjct: 276 LVSKFEPRRNGLGLN------NILYIATLVEYFRKRAELGRAAGEILLIEEPEAHLHPQL 329 Query: 331 RNALFRIVTDIGSQIFMTG 349 ++ L + + Q ++ Sbjct: 330 QSTLVEALRSMPFQSLVST 348 >gi|256750713|ref|ZP_05491598.1| SMC domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750296|gb|EEU63315.1| SMC domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 451 Score = 63.8 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60 + +K L + F+++A + L F+ T VG NG GK+NI +AI + + R + Sbjct: 1 MYLKKLELQGFKSFADKVTLNFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV GS + F ++ +G + + + RS IN R Sbjct: 61 LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + D L +D I S +RR+ + + R+ Sbjct: 121 LKDIYELFLDTGVGKEGYSIIGQGRIDEILSAKPEDRRQIFEEAIGISKYRY 172 >gi|300984863|ref|ZP_07177151.1| RecF/RecN/SMC protein [Escherichia coli MS 45-1] gi|300408292|gb|EFJ91830.1| RecF/RecN/SMC protein [Escherichia coli MS 45-1] gi|315292954|gb|EFU52306.1| RecF/RecN/SMC protein [Escherichia coli MS 153-1] Length = 465 Score = 63.8 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++I L++ FR + L + FD TI V NG GKT +L+A+ Sbjct: 1 MRIDKLSLLNFRCFKQLDITFDEHITILVAPNGAGKTTVLDAVRL 45 >gi|315230818|ref|YP_004071254.1| chromosome partition smc-like protein [Thermococcus barophilus MP] gi|315183846|gb|ADT84031.1| chromosome partition smc-like protein [Thermococcus barophilus MP] Length = 1087 Score = 63.8 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 97/286 (33%), Gaps = 42/286 (14%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 I+ L + F++Y + + F T VG NG GK+NI +AI F+ G R Sbjct: 4 IEKLEMKGFKSYGSRKVVVPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRATRI 63 Query: 62 ADVTRIGSP-------SFFSTFARVEGM---EGLADISIKLETRDDRSVRCLQINDVVIR 111 +D+ G+ + + + E ++ IK D +N Sbjct: 64 SDLIFAGTKKEPPAKYAEVTIYFNNEDRGFPVDEDEVVIKRRVYPDGRS-TYWLNGKRTS 122 Query: 112 VVDELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 D L L + + P + +ERR +D + + ++ Sbjct: 123 RSDIL-DILSAAMISPEGYNLVLQGDITKFIKMSPVERRMIIDEISG---------IAEY 172 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 + + L + + + + ++ + K+ R + + L KE Sbjct: 173 DAKKKKAMEELKQAEENLARVDLLIHEVKKQLDKLEKERNDALRYLD-------LKEKLE 225 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 K++L + ++ +E + + ++++ + + G Sbjct: 226 KAKVTLLVGEIKRLEKLIKESEERDKQIEKEAKEVEDKLKEIVKGI 271 >gi|224500034|ref|ZP_03668383.1| hypothetical protein LmonF1_10304 [Listeria monocytogenes Finland 1988] Length = 1186 Score = 63.8 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 >gi|16803844|ref|NP_465329.1| hypothetical protein lmo1804 [Listeria monocytogenes EGD-e] gi|224501395|ref|ZP_03669702.1| hypothetical protein LmonFR_02550 [Listeria monocytogenes FSL R2-561] gi|16411258|emb|CAC99882.1| smc [Listeria monocytogenes EGD-e] Length = 1186 Score = 63.8 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 >gi|321257907|ref|XP_003193746.1| DNA repair-related protein [Cryptococcus gattii WM276] gi|317460216|gb|ADV21959.1| DNA repair-related protein, putative [Cryptococcus gattii WM276] Length = 1124 Score = 63.8 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 14/124 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK +++ +F + L + F + VG NG GK+ +L AI+ G+ R D Sbjct: 99 IKSISLIDFMCHRHLTVDFGPRMNFVVGHNGSGKSAVLTAIAVALGGKANLTGRGTGLKD 158 Query: 64 VTRIGSPSFFSTFARVEGMEG-----------LADISIKLETRDDRSVRCLQINDVVIRV 112 + R G+ T + + + +I + + + Sbjct: 159 LIRTGADRAVITITLANSGDSAYRPEVYNPNIVIERTIHSNGSSGYKFKASKDGKTIANK 218 Query: 113 VDEL 116 EL Sbjct: 219 RSEL 222 >gi|261189141|ref|XP_002620982.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081] gi|239591767|gb|EEQ74348.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081] Length = 1355 Score = 63.8 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 77/264 (29%), Gaps = 23/264 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 I + +++F Y S + + +G NG GK+ ++ AI L G R A+ Sbjct: 230 IVRVKLTDFVTYTSAEFFPGPRLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPAE 289 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLR 121 + G +G + I+ + IN EL K Sbjct: 290 FVKHGCEEAIIEIELAKGRNHRENPVIRRTIVRKGNKSTFAINGKPSSKASVLELAKSFS 349 Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 I +P A P + + +R + L Sbjct: 350 IQIDNLCQFLPQDKVAEFAALSPIELLHSTQRAAAGPEMLE-WHENLKTLRAEQKKLQAA 408 Query: 177 YF-DSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + +++E +M V+ + R + I + P + ++ F + Sbjct: 409 NAGEREQLANLESRQEMQREDVERLLQR----ARIQKKIALLERSRPVPRYQEAVQSFRE 464 Query: 234 GK-----FDQSFCALKEEYAKKLF 252 + Q L+ + A L Sbjct: 465 AQHKRRNLQQEHGDLENQLAPALK 488 >gi|154249435|ref|YP_001410260.1| SMC domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153371|gb|ABS60603.1| SMC domain protein [Fervidobacterium nodosum Rt17-B1] Length = 935 Score = 63.8 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 8/123 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + F+ + F + + VG NG GK++I EA+ G + D+ Sbjct: 2 INKIKLENFKCHLDREFDFVSGINVIVGRNGAGKSSIFEALGMALFGISEK--KPKDLIS 59 Query: 67 I--GSPSFFSTFARVEGMEGLADISIKLETRDDRS---VRCLQINDVVIRVVDELNKHLR 121 S+F G +G ++ + ++ +R + N+V+ +DE+ K++ Sbjct: 60 RLSSQNSYFKINVEFTGEDG-IRYEVERVYKSGKNSWVLRQVGSNNVITNKLDEVPKYVS 118 Query: 122 ISW 124 Sbjct: 119 KLL 121 >gi|331235125|ref|XP_003330223.1| hypothetical protein PGTG_11133 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309213|gb|EFP85804.1| hypothetical protein PGTG_11133 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1239 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 93/287 (32%), Gaps = 38/287 (13%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61 + + + + F++Y + + T +G NG GK+N+++AISF+ R R Sbjct: 1 MPLHSVEVDNFKSYKGVQTIGPFKHFTAVIGPNGAGKSNLMDAISFVLGVRSAQLRSTQL 60 Query: 62 ADVTR-----------IGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQ-IND 107 D+ P S A S + D+S + IN Sbjct: 61 KDLIYKAGELEDSSTPHEQPKKASVTANYIDHRNGQQYRFSRTITVSSDKSGSSIYTINK 120 Query: 108 VVIRVVDE---------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------ 152 V+++ D L K ++ I S + +D++ +++ Sbjct: 121 KVVKLEDYVATLESHNILVKAKNFLVFQGDVEAIASQNPKSLSKLIDQISGSLELAAEYE 180 Query: 153 ---PRHRRRMIDFERLMRGR---NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206 + + + R N + + + + + I + + Sbjct: 181 RKKAAYLEASKNSNDTIARRRVINAEIKDFKHQKTEMEKYDQLCHDRDEAIIHHLLWKLF 240 Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 + + I E+++ + L ++S A + EYA+ + Sbjct: 241 HIEAQINEHLESIESKNETLGPMRLEVADLERSVAAARREYAQVTRE 287 >gi|312110526|ref|YP_003988842.1| SMC domain protein [Geobacillus sp. Y4.1MC1] gi|311215627|gb|ADP74231.1| SMC domain protein [Geobacillus sp. Y4.1MC1] Length = 475 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 23/198 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASY 61 +KI L + F+N+ F + F GDN GKT+I +AI F G GF+ + Sbjct: 1 MKIISLELRHFKNHTQAFFEF-KETNHFFGDNFTGKTSIGDAIVFALYGVTKHGFKSHVH 59 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK-HL 120 D + G S ++ + I+ D + L N V + + +L H+ Sbjct: 60 -DFIQTGKNS---MSVKIMVQLNNRILEIERSINDKQETLTLNKNKVTQKQLSQLIGDHV 115 Query: 121 RISW-LVPSMDRIFSGLSMERRRFLDRMVFAIDPR------HRRRMIDFER-LMRGRNRL 172 + P + E ++ + ++ P H + + L++ +L Sbjct: 116 PFIYSFFPDVF------PEEEKKIAREFLISLLPNKNEINMHINNLETKMKDLLKQEKKL 169 Query: 173 LTEGYFDSSWCSSIEAQM 190 + + +E+Q Sbjct: 170 KQNITYYYGQLNMLESQF 187 >gi|237708924|ref|ZP_04539405.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229456986|gb|EEO62707.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 484 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 + IK + IS FRN+ + F + +G N GK+N+L A+ L GR Sbjct: 1 MYIKEIKISNFRNFKEASVPFHEGVNVIIGHNNTGKSNLLRAMG-LVLGRS 50 >gi|119873433|ref|YP_931440.1| hypothetical protein Pisl_1950 [Pyrobaculum islandicum DSM 4184] gi|119674841|gb|ABL89097.1| hypothetical protein Pisl_1950 [Pyrobaculum islandicum DSM 4184] Length = 460 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 1 MTNRIKI--KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 M++ + + + + + F++ L L + VG NG GK+N+LEAI F Sbjct: 1 MSHVMYVFVRKVVVRNFKSIGELELELRPGVNLLVGPNGAGKSNVLEAIRF 51 >gi|167040353|ref|YP_001663338.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X514] gi|300914437|ref|ZP_07131753.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X561] gi|307724327|ref|YP_003904078.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X513] gi|166854593|gb|ABY93002.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X514] gi|300889372|gb|EFK84518.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X561] gi|307581388|gb|ADN54787.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X513] Length = 1196 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60 + +K L + F+++A + L F+ T VG NG GK+NI +AI + + R + Sbjct: 1 MYLKKLELQGFKSFADKVTLNFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV GS + F ++ +G + + + RS IN R Sbjct: 61 LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + D L +D I S +RR+ + + R+ Sbjct: 121 LKDIYELFLDTGVGKEGYSIIGQGRIDEILSAKPEDRRQIFEEAIGISKYRY 172 >gi|49481951|gb|AAT66687.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A71] Length = 573 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 93/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ + A++ I + +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ ++ E+ L + LD A + + + Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 L+ + S E QMA R++++ +E E + Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQATLELGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + A+++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248 >gi|296876110|ref|ZP_06900164.1| chromosome segregation protein SMC [Streptococcus parasanguinis ATCC 15912] gi|296432821|gb|EFH18614.1| chromosome segregation protein SMC [Streptococcus parasanguinis ATCC 15912] Length = 1178 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 104/277 (37%), Gaps = 30/277 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + ++ +G AD I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYACVTVVLDNQDGFIQQADKEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + + R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--FKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + L +E Q+ L + +AR L V + Sbjct: 179 TKLNQTQENLDRL---EDILYELEGQIQPLEKQATVARR----FLELDQERQVLLLDVLV 231 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 ++ LT L K DQ A++E+ A + ++ Sbjct: 232 AQVDLTKELYEKADQEEKAIQEQLASYYQRRQVLEEE 268 >gi|284802250|ref|YP_003414115.1| hypothetical protein LM5578_2006 [Listeria monocytogenes 08-5578] gi|284995392|ref|YP_003417160.1| hypothetical protein LM5923_1957 [Listeria monocytogenes 08-5923] gi|284057812|gb|ADB68753.1| hypothetical protein LM5578_2006 [Listeria monocytogenes 08-5578] gi|284060859|gb|ADB71798.1| hypothetical protein LM5923_1957 [Listeria monocytogenes 08-5923] Length = 1186 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 >gi|322389037|ref|ZP_08062605.1| DNA repair protein RecN [Streptococcus parasanguinis ATCC 903] gi|321144260|gb|EFX39670.1| DNA repair protein RecN [Streptococcus parasanguinis ATCC 903] Length = 552 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 61/385 (15%), Positives = 129/385 (33%), Gaps = 65/385 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P + +G+E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFTVESNRHLTALFEEQGLEWTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + + D+ F D F +R+ D++RL + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDAAFFQTKDAYRQTFEDYKRLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINA--LSSLIMEYVQK 218 L + + +E Q+AE+ ++ R ++N ++ + Sbjct: 176 VELQRNQQENKARIEMLEFQIAEIEAAALEVDEDLRLEQERQRLLNHKMIADTLTNAYTM 235 Query: 219 ENFPHIKLSLTGFLDG--------KFDQSFCALKEEYAKKLFD-----GRKMDSMSRRTL 265 + SL+ ++D S+ L + ++ + R D + Sbjct: 236 LDAEEFS-SLSNVRSAMNDLENIEEYDPSYKELSSQLSETFYALEDITKRLEDVVDGLEF 294 Query: 266 IGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 G + +IT +G G+ K VL ++ T +L +S+ Sbjct: 295 DGNRLMQVESRLDLIHSITRKYG--GQVKDVL--------EYLAQITKEYSLLTGSNLSS 344 Query: 325 HLDEDK-----RNALFRIVTDIGSQ 344 D +K +L + D+ Q Sbjct: 345 E-DLEKELKRLEKSLVTLAQDLSDQ 368 >gi|138895960|ref|YP_001126413.1| DNA repair and genetic recombination [Geobacillus thermodenitrificans NG80-2] gi|196248851|ref|ZP_03147551.1| DNA repair protein RecN [Geobacillus sp. G11MC16] gi|49481927|gb|AAT66675.1| DNA repair and genetic recombination protein [Geobacillus thermodenitrificans] gi|49481929|gb|AAT66676.1| DNA repair and genetic recombination protein [Geobacillus thermodenitrificans] gi|49481931|gb|AAT66677.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A21] gi|49481933|gb|AAT66678.1| DNA repair and genetic recombination protein [Geobacillus thermodenitrificans] gi|49481935|gb|AAT66679.1| DNA repair and genetic recombination protein [Geobacillus thermodenitrificans] gi|49481937|gb|AAT66680.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A45] gi|49481939|gb|AAT66681.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A5] gi|49481941|gb|AAT66682.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A54] gi|49481945|gb|AAT66684.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A66] gi|49481947|gb|AAT66685.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A67] gi|49481949|gb|AAT66686.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A69] gi|49481953|gb|AAT66688.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A73] gi|49481965|gb|AAT66694.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A91] gi|82395828|gb|ABB72478.1| DNA repair protein [Geobacillus thermodenitrificans NG80-2] gi|134267473|gb|ABO67668.1| DNA repair and genetic recombination [Geobacillus thermodenitrificans NG80-2] gi|196211727|gb|EDY06486.1| DNA repair protein RecN [Geobacillus sp. G11MC16] Length = 573 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 93/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ + A++ I + +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ ++ E+ L + LD A + + + Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 L+ + S E QMA R++++ +E E + Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQATLELGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + A+++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248 >gi|238790539|ref|ZP_04634306.1| Predicted ATP-binding protein involved in virulence [Yersinia frederiksenii ATCC 33641] gi|238721336|gb|EEQ13009.1| Predicted ATP-binding protein involved in virulence [Yersinia frederiksenii ATCC 33641] Length = 541 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 74/417 (17%), Positives = 144/417 (34%), Gaps = 79/417 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K + + ++ + L + D + +NG GKT ILEAI LS +R + Sbjct: 59 LKKVKLVNYKGFNELSINLDNDIILIAANNGYGKTGILEAIY-LSLSWFYR------LV- 110 Query: 67 IGSPSFFS-----TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 GS + V L ++ I + S + I + Sbjct: 111 YGSNQGWKFGDKYISRLVSNAAMLVNLDISVGNNKKPSGYQIGIARSLGAS--------- 161 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----------- 170 V S F L+ F D + + P + + RG+N Sbjct: 162 ---SVKSDYTEFKELAEMYLEFQDSDI--VAPMFA-----YYSVERGKNYPDGGFTSAIE 211 Query: 171 ----RLLTEGYFDSSWC--SSIEAQMAELGVKINIA--------RVEMINALSSLIMEYV 216 +LL Y DSS S+I A + +I I + E + ++ I Sbjct: 212 SGSGKLLDRLYPDSSLALSSNIFASFIKWAAEIKIKKIVSNEDEQSEKLKSIKEFIYHIS 271 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM---------DSMSRRTLIG 267 + IK +L + + + F + ++ + L K+ D + + I Sbjct: 272 HSDLADEIKNTLISQKEKEVEIIFGSQSKDKSTNLDRMEKIVDMIFALGCDFIDDISSIQ 331 Query: 268 PHRS------DLIVDYCDKAITIAHGSTGEQKVVLV----GIFLAHARLISNTTGFAPIL 317 DL+ D I+ ++ S GE+ + + + L + + I+ Sbjct: 332 LKYDEKLEALDLVCVKRDCEISASYLSHGEKSTLSLLFDIALKLIYTCGTEDPFSGQGIV 391 Query: 318 LLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETA-KFMRISNHQ 371 +DEI HL + +L + +I T ++ +++ E A + +++ N++ Sbjct: 392 FIDEIELHLHPSWQQSLLSKLKKTFPNVKIIATTHSPNILNTVEEQAIRKIKVKNNR 448 >gi|217964044|ref|YP_002349722.1| chromosome segregation protein SMC [Listeria monocytogenes HCC23] gi|290893066|ref|ZP_06556055.1| chromosome segregation SMC protein [Listeria monocytogenes FSL J2-071] gi|217333314|gb|ACK39108.1| chromosome segregation protein SMC [Listeria monocytogenes HCC23] gi|290557426|gb|EFD90951.1| chromosome segregation SMC protein [Listeria monocytogenes FSL J2-071] gi|307571386|emb|CAR84565.1| chromosome condensation and segregation protein [Listeria monocytogenes L99] Length = 1186 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 >gi|49481961|gb|AAT66692.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A86] Length = 573 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 93/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ + A++ I + +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ ++ E+ L + LD A + + + Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 L+ + S E QMA R++++ +E E + Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQATLELGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + A+++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248 >gi|226224407|ref|YP_002758514.1| Smc protein [Listeria monocytogenes Clip81459] gi|225876869|emb|CAS05578.1| Putative Smc protein [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 1186 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 Score = 36.8 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%) Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252 + R + +N + ++ KE + + + +F +SF A+K E+A +LF Sbjct: 995 ERIQERFDFLNRQQADLLA--AKETLFKVMDEMDEEMKIRFSESFEAIKTEFAIVFPELF 1052 Query: 253 DGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 G + + L+ ++ K ++ S GE+ + + + A R+ Sbjct: 1053 GGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSLRSGGERALTAIALLFAIIRV---- 1108 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 P +LDE+ A LDE R + G+Q + Sbjct: 1109 -RPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIV 1146 >gi|45190650|ref|NP_984904.1| AER044Wp [Ashbya gossypii ATCC 10895] gi|44983629|gb|AAS52728.1| AER044Wp [Ashbya gossypii ATCC 10895] Length = 1103 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 10/127 (7%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYADV 64 K + + F + L F + VG NG GK+ IL AI+ + + R S + Sbjct: 63 KRITLKNFMCHEHFELEFGPRLNFIVGSNGSGKSAILTAITVVFGAKASDTNRGVSLKSL 122 Query: 65 TRIGSPSFFSTF-------ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 R G + E ++I+I+ + D I R V Sbjct: 123 IREGCGTARIAIVLANQGLGAFEQGVYGSEITIERTLKRDGQSSHFSIKSENGREVSNKK 182 Query: 118 KHLRISW 124 + L+ Sbjct: 183 RDLQRIV 189 >gi|46908035|ref|YP_014424.1| chromosome segregation SMC protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093843|ref|ZP_00231587.1| chromosome segregation SMC protein [Listeria monocytogenes str. 4b H7858] gi|254933276|ref|ZP_05266635.1| chromosome segregation SMC protein [Listeria monocytogenes HPB2262] gi|46881305|gb|AAT04601.1| chromosome segregation SMC protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017784|gb|EAL08573.1| chromosome segregation SMC protein [Listeria monocytogenes str. 4b H7858] gi|293584836|gb|EFF96868.1| chromosome segregation SMC protein [Listeria monocytogenes HPB2262] gi|332312245|gb|EGJ25340.1| Cell division protein Smc [Listeria monocytogenes str. Scott A] Length = 1186 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 Score = 36.8 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%) Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252 + R + +N + ++ KE + + + +F +SF A+K E+A +LF Sbjct: 995 ERIQERFDFLNRQQADLLA--AKETLFKVMDEMDEEMKIRFSESFEAIKTEFAIVFPELF 1052 Query: 253 DGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 G + + L+ ++ K ++ S GE+ + + + A R+ Sbjct: 1053 GGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSLRSGGERALTAIALLFAIIRV---- 1108 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 P +LDE+ A LDE R + G+Q + Sbjct: 1109 -RPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIV 1146 >gi|259507583|ref|ZP_05750483.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259164762|gb|EEW49316.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 670 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 21/171 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALPIDYTEVSVTRRMFRDGASEYEINGARAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 ++D + + + I + I ERR +++ + R Sbjct: 121 LMDIQELLSDSGIGREMHIMVGQGKLAEILESRPEERRAYIEEAAGVLKHR 171 >gi|254826154|ref|ZP_05231155.1| chromosome segregation SMC protein [Listeria monocytogenes FSL J1-194] gi|255521157|ref|ZP_05388394.1| chromosome segregation SMC protein [Listeria monocytogenes FSL J1-175] gi|293595394|gb|EFG03155.1| chromosome segregation SMC protein [Listeria monocytogenes FSL J1-194] Length = 1186 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 Score = 36.8 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%) Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252 + R + +N + ++ KE + + + +F +SF A+K E+A +LF Sbjct: 995 ERIQERFDFLNRQQADLLA--AKETLFKVMDEMDEEMKIRFSESFEAIKTEFAIVFPELF 1052 Query: 253 DGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 G + + L+ ++ K ++ S GE+ + + + A R+ Sbjct: 1053 GGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSLRSGGERALTAIALLFAIIRV---- 1108 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 P +LDE+ A LDE R + G+Q + Sbjct: 1109 -RPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIV 1146 >gi|47097387|ref|ZP_00234938.1| chromosome segregation SMC protein [Listeria monocytogenes str. 1/2a F6854] gi|254831595|ref|ZP_05236250.1| hypothetical protein Lmon1_09588 [Listeria monocytogenes 10403S] gi|254899499|ref|ZP_05259423.1| hypothetical protein LmonJ_06784 [Listeria monocytogenes J0161] gi|254912362|ref|ZP_05262374.1| chromosome segregation SMC protein [Listeria monocytogenes J2818] gi|254936689|ref|ZP_05268386.1| chromosome segregation SMC protein [Listeria monocytogenes F6900] gi|47014235|gb|EAL05217.1| chromosome segregation SMC protein [Listeria monocytogenes str. 1/2a F6854] gi|258609285|gb|EEW21893.1| chromosome segregation SMC protein [Listeria monocytogenes F6900] gi|293590343|gb|EFF98677.1| chromosome segregation SMC protein [Listeria monocytogenes J2818] Length = 1186 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 >gi|121595344|ref|YP_987240.1| SMC domain-containing protein [Acidovorax sp. JS42] gi|120607424|gb|ABM43164.1| SMC domain protein [Acidovorax sp. JS42] Length = 406 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF 56 ++++ L + FR Y L + A+ T+ +G+NG GKT +L+AI+ L Sbjct: 1 MRLQRLTLENFRGYTCLEIGLGARLTLLLGENGAGKTTLLDAIAIGLGELMSH 53 >gi|302335831|ref|YP_003801038.1| condensin subunit Smc [Olsenella uli DSM 7084] gi|301319671|gb|ADK68158.1| condensin subunit Smc [Olsenella uli DSM 7084] Length = 1177 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 101/308 (32%), Gaps = 33/308 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L + F+++A ++ FD T+ VG NG GK+NI +AI ++ + R + Sbjct: 1 MYLKSLTLRGFKSFADKTQMAFDPGLTVVVGPNGSGKSNISDAILWVLGEQSAKMLRGQA 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS A V + AD +I L+ + R + IN R Sbjct: 61 MEDVIFSGSSGRPAVGLAEVTLVLDNADHTIPLDFSELAVTRRMYRSGESEYLINGAPAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + ERR ++ R R+ + Sbjct: 121 LRDITDILHDSGLGKDTHSIISQGKLDSILASRPEERRELVEEAAGISKHRRRKERSQRK 180 Query: 164 -RLMRGRNRLLTEGYFD-SSWCSSIEAQM----------AELGVKINIARVEMINALSSL 211 R M+ + + +E Q+ +EL + V+ + L Sbjct: 181 LRAMQENLTRAKDIEREIGRQLKPLERQVDKAKRHHDLASELSLLTTTLAVDDLRQLQQR 240 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 + + L + + + +K + RR R Sbjct: 241 WRLLTEHGKEADAAIELAQYRLDEKSSELEKYQYLLEQKGIFVGDLGEQRRRMQDILGRM 300 Query: 272 DLIVDYCD 279 D + + Sbjct: 301 DSDMRLLE 308 >gi|322420360|ref|YP_004199583.1| SMC domain-containing protein [Geobacter sp. M18] gi|320126747|gb|ADW14307.1| SMC domain protein [Geobacter sp. M18] Length = 362 Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 62/393 (15%), Positives = 126/393 (32%), Gaps = 62/393 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ------HTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 +K+K + I F+ S + T +GDNG GKT+IL+AI + Sbjct: 1 MKLKNVLIRNFKGVRSAEFSMEGPSHHPRPLTALLGDNGSGKTSILQAI---ALTLSMAT 57 Query: 59 ASYADVTRIGSPSFF--------STFARVEGMEGLADISIKLETRDD------RSVRCLQ 104 D++ F +F ++ +I++ E + R L+ Sbjct: 58 RRTRDLSSFNWHGFLPERVSNLGESFVELDVTFDQEEIALTTELFEAWQDSLPSETRQLK 117 Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 + D + + P + +FL R + + + Sbjct: 118 RIVPPSQHTDVKLQFHQGRVRSPQGLEAVN-------QFLGR-------YYVKFLSKTRP 163 Query: 165 LMRGRNRLLTEGY---FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + + LL + + + S ++A K + L ++ + Sbjct: 164 EFKEKFSLLGDVFWFDQHRNLGSVWFEEVAGEAQKREGW-QAGVEQLREYLVGWWGHHT- 221 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY--CD 279 + + L++ + R + R ++ P +D D Sbjct: 222 ---------TVQRRGKDFIEPLEKSFQSIFPGTRFVGIEPREDVVSPKANDFYFLMQRAD 272 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + +A S+GEQ + + RL + I+L+DE+ HL ++ L + Sbjct: 273 RVYDLAEMSSGEQ--AVFPLIYEFVRLDIQRS----IVLIDELELHLHPPEQQRLLAALP 326 Query: 340 DI--GSQIFMTGTDKSVFDSLNETAKFMRISNH 370 I G Q +T T S + +R++ Sbjct: 327 KIGSGCQYIIT-THSEFLSSAIPNEQEVRLAEG 358 >gi|313618315|gb|EFR90362.1| chromosome segregation protein SMC [Listeria innocua FSL S4-378] Length = 1186 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 >gi|254852712|ref|ZP_05242060.1| chromosome segregation SMC protein [Listeria monocytogenes FSL R2-503] gi|300763883|ref|ZP_07073880.1| chromosome segregation SMC protein [Listeria monocytogenes FSL N1-017] gi|258606033|gb|EEW18641.1| chromosome segregation SMC protein [Listeria monocytogenes FSL R2-503] gi|300515619|gb|EFK42669.1| chromosome segregation SMC protein [Listeria monocytogenes FSL N1-017] Length = 1186 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 Score = 36.8 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%) Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252 + R + +N + ++ KE + + + +F +SF A+K E+A +LF Sbjct: 995 ERIQERFDFLNRQQADLLA--AKETLFKVMDEMDEEMKIRFSESFEAIKTEFAIVFPELF 1052 Query: 253 DGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 G + + L+ ++ K ++ S GE+ + + + A R+ Sbjct: 1053 GGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSLRSGGERALTAIALLFAIIRV---- 1108 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 P +LDE+ A LDE R + G+Q + Sbjct: 1109 -RPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIV 1146 >gi|167758291|ref|ZP_02430418.1| hypothetical protein CLOSCI_00629 [Clostridium scindens ATCC 35704] gi|167664188|gb|EDS08318.1| hypothetical protein CLOSCI_00629 [Clostridium scindens ATCC 35704] Length = 1186 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 84/224 (37%), Gaps = 27/224 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60 + +K + + F+++A ++ F T VG NG GK+N+ +A+ L R R S Sbjct: 1 MYLKSIEVQGFKSFAHKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGGS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + I + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNSDHQLPIDFEEVTVARKLYRSGESEYLINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ M + Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNMS-VK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207 +L R LL + +E Q+ L + AR E + Sbjct: 180 KLEEERQNLLRVN----DILAELEKQVGPLERQAETAR-EYLKK 218 >gi|332071307|gb|EGI81802.1| DNA replication and repair recF domain protein [Streptococcus pneumoniae GA17545] Length = 70 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 + + T +PILLLD++ + LD ++ L ++ Q F+T T +L E Sbjct: 1 MESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLSIFT 59 Query: 367 ISNHQA 372 I + +A Sbjct: 60 IQDGKA 65 >gi|323489555|ref|ZP_08094782.1| chromosome partition protein smc [Planococcus donghaensis MPA1U2] gi|323396686|gb|EGA89505.1| chromosome partition protein smc [Planococcus donghaensis MPA1U2] Length = 1182 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 95/264 (35%), Gaps = 39/264 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A + + F T VG NG GK+N+ +AI L + R A Sbjct: 1 MFLKRLEVMGFKSFADRIGIDFVPGVTAVVGPNGSGKSNVTDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRV 112 DV GS S F ++ +G + + + R RS + + Sbjct: 61 MEDVIFAGSDSRKPLNFAEVTLVLDNTDGRVPLDYSEVSVTRRVFRSGESAYLLNKQNCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S + ERR + ++ ++ Sbjct: 121 LKDITDLFMDSGLGKEAFSIISQGRVDEILNSKAEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222 + R + + D + ++ + EL R+E + +S +++ E Sbjct: 172 Q--RKKKAEIKLNETDENLNRVLDI-LHEL-----DGRMEPLQIQASTARDFLDMNEQLK 223 Query: 223 HIKLSLTGFLDGKFDQSFCALKEE 246 ++L + G ++ L+ E Sbjct: 224 DADIALLAYDAGNLEKELSQLENE 247 >gi|119486512|ref|ZP_01620570.1| hypothetical protein L8106_00920 [Lyngbya sp. PCC 8106] gi|119456414|gb|EAW37545.1| hypothetical protein L8106_00920 [Lyngbya sp. PCC 8106] Length = 382 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 67/372 (18%), Positives = 122/372 (32%), Gaps = 48/372 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I FR + S L + + VG+N GKT+ILEAI FL R + + Sbjct: 2 LKTLKIENFRGFQSFELQSLGRVNLLVGENNSGKTSILEAIQFLLCSRTNLEPLFKTMIE 61 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD-ELNKHLRISWL 125 G S R E + + + D +++ + V ++ S L Sbjct: 62 RGEYSLTRDNIRTETELEIRHLFHGHDIDIDSQFSISSLDESDHKKVTISIHSIPSTSEL 121 Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 P + + V + R +E +W Sbjct: 122 EPDSES--DEQLSYENLSANDSVELVKLGFNIRWN-------------SENQESENWERP 166 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK---------ENFPHIKLSLTGFLDGKF 236 + + I + R+ + N + + +++ E F I L+ L + Sbjct: 167 LSSNGGLSDRYIRMNRLRLSNKNINSVTQFITSSSLSIEMMIELFEDIVLTSEEKLVYEA 226 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ--KV 294 Q+ E A + S +V D+ I GS G+ ++ Sbjct: 227 LQTIEPTIERIASISSKIYRSSSSRGG---------FVVLLSDREQRIPIGSLGDGIWRM 277 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV----TDIGSQIFMTGT 350 + + + LA +LL+DEI L + L++++ + Q+F T Sbjct: 278 LGLSLALASV--------KGGVLLVDEIDTGLHYSTMSDLWKLIWEAAKKLDVQVFATTH 329 Query: 351 DKSVFDSLNETA 362 + + SL A Sbjct: 330 NSDCWTSLASIA 341 >gi|58266006|ref|XP_570159.1| DNA repair-related protein [Cryptococcus neoformans var. neoformans JEC21] gi|57226392|gb|AAW42852.1| DNA repair-related protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1125 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 14/124 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK +++ +F + L + F + VG NG GK+ +L AI+ G+ R D Sbjct: 99 IKSISLIDFMCHRHLTVDFGPRMNFVVGHNGSGKSAVLTAIAVALGGKANLTGRGTGLKD 158 Query: 64 VTRIGSPSFFSTFARVEGMEG-----------LADISIKLETRDDRSVRCLQINDVVIRV 112 + R G+ T + + + +I + + + Sbjct: 159 LIRTGAERAVITITLANSGDSAYRPEVYNPNIVIERTIHSNGSSGYKFKASKDGKTIANK 218 Query: 113 VDEL 116 EL Sbjct: 219 RSEL 222 >gi|225174508|ref|ZP_03728507.1| SMC domain protein [Dethiobacter alkaliphilus AHT 1] gi|225170293|gb|EEG79088.1| SMC domain protein [Dethiobacter alkaliphilus AHT 1] Length = 1021 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 10/134 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L++ + Y + F G NG GKT I+EAI + F + Sbjct: 1 MKIYELHLKNCKCYEDETINFQEGLNFISGVNGAGKTTIIEAIGLVLF--NFLPYNAKQF 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI-- 122 R G S A +E + I+ + ++++ ++ +DEL+ + Sbjct: 59 VRDGKKSG-EIQALIEAKDERLYRIIRKFNKTTKTLKWEVYDEETNTCLDELHGSDDVSR 117 Query: 123 -----SWLVPSMDR 131 + P Sbjct: 118 WIKESIGIDPEDSL 131 Score = 41.8 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 41/206 (19%) Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI-----NALSSLIMEYVQKENFPHIKL 226 L + D+ ++ + + R +++ L+ I E ++ P + Sbjct: 824 YLEQIKKDAKRLKEQLDELLKKKSQWEQNRYKLLVKNKTRELAQTIRETIKDAADPVAHV 883 Query: 227 SLTG--------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 + + EY +L D R Sbjct: 884 YRQYLSAEANEIYRHVSNENVQVEWASEYELQLKDNFHAKERVRV--------------- 928 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 S GEQ + + LA +++S+ + DE + +LD +R L + Sbjct: 929 -----FKQLSGGEQMTAALAVRLALMKMLSDVK----LGFFDEPTTNLDSSRRQNLAMAI 979 Query: 339 TDI---GSQIFMTGTDKSVFDSLNET 361 Q+F+ FD+L E Sbjct: 980 QKSTKGFEQLFVIS-HDDAFDTLTEN 1004 >gi|22299468|ref|NP_682715.1| chromosome segregation SMC protein [Thermosynechococcus elongatus BP-1] gi|22295651|dbj|BAC09477.1| chromosome segregation SMC protein [Thermosynechococcus elongatus BP-1] Length = 1168 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 31/220 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK L ++ F+++ + T+ G NG GK+N+L+A+ F L+ +G R Sbjct: 1 MYIKRLELTNFKSFGGTTVIPLLPGFTVISGPNGSGKSNLLDALLFALGLAGSKGMRAER 60 Query: 61 YADVTRIGSP--SFFSTFARVE---GMEGLADISIKLETRDDRSV---RCLQINDVVIRV 112 D+ RV ++ + + R + +ND Sbjct: 61 LPDLVNHSQTRRGHSVVETRVTVTFALDAETEWRVTRRLRVTKQGSYTSTYAVNDQPC-T 119 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++EL+ L+ + P + + RR +D + + DF+ Sbjct: 120 LNELHDQLQAFCIYPQGYNVVLQGDVTSMISMNAKARREIIDELAG---------VADFD 170 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 R + L +E ++ + ++ R+ Sbjct: 171 RKIAQAREKLDTVKEREERFRIVERELIQQRDRLQRERLH 210 >gi|313623279|gb|EFR93522.1| chromosome segregation protein SMC [Listeria innocua FSL J1-023] Length = 1186 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 >gi|209523386|ref|ZP_03271941.1| SMC domain protein [Arthrospira maxima CS-328] gi|209496128|gb|EDZ96428.1| SMC domain protein [Arthrospira maxima CS-328] Length = 403 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 57/363 (15%), Positives = 117/363 (32%), Gaps = 59/363 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L I+ FR + F + VG NGVGK+++L+A+ ++ Sbjct: 1 MQINHLKITNFRGFEQAEFEFQPGMNLIVGINGVGKSSVLDALRIA------FSRILPEL 54 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 T F + M G ++ +++ +++ + +I Sbjct: 55 T--DCQERRINFNIDDIMIGKTELKVEINVDISGIPFRCKVSRGKRHEQELKPDGYQI-- 110 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + +V+ R D NR L G +++ Sbjct: 111 -----LGLIKDDPNQP-----LVVYCATRRSIVTEQDLNP-----NRSL--GNQSAAFVD 153 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 ++ +M L I+ V+ L + Q + ++T FLD + Sbjct: 154 ALIPRMLRLREFIDWWLVQ--EELLDEKPQLTQGR-IDALNDAVTCFLDWCNNVRAVPAS 210 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI----F 300 + Y K L++D + I S GE+ ++ + + Sbjct: 211 DTYKKP---------------------TLLLDKNGVTLNINQLSDGERGILALILDLVQR 249 Query: 301 LAHA--RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFD 356 L A L + ++L+DE+ HL + + +T+I Q T + Sbjct: 250 LLQANPELENPVQDGKAVVLIDELDLHLHPQWQRMVVHKLTEIFPNCQFIATTHSPQMIG 309 Query: 357 SLN 359 + Sbjct: 310 EVK 312 >gi|16800984|ref|NP_471252.1| hypothetical protein lin1918 [Listeria innocua Clip11262] gi|16414419|emb|CAC97148.1| smc [Listeria innocua Clip11262] Length = 1186 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L + +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250 >gi|288560363|ref|YP_003423849.1| DNA double-strand break repair protein Rad50 [Methanobrevibacter ruminantium M1] gi|288543073|gb|ADC46957.1| DNA double-strand break repair protein Rad50 [Methanobrevibacter ruminantium M1] Length = 932 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 31/174 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + K L + F+++A L D ++ VG+NG GK++I EAISF + + + + D+ Sbjct: 1 MIFKHLQLKNFKSHADTELDLDLGISLIVGENGAGKSSIFEAISF-ALFKNYTTNNITDL 59 Query: 65 TRIGS------PSFFSTFARVEGMEGLAD------------------ISIKLETRDDRSV 100 R EG E + + IS + + R Sbjct: 60 VRTNKNLDEKIEMSVKLTFLCEGNEYMVERGGILSPSKTKSKPNFKSISNLFKISNGRED 119 Query: 101 RCLQINDVVIRVVDELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMV 148 N V R ++EL ++L + + R++ + +++ Sbjct: 120 IIASGNKEVDRQIEELLNMNSSTFLNAIYIRQGEISALIDDTPANRKKLITKLL 173 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 ++ + + I S GE+ + + + L + +S G +LLDE + HLD +R Sbjct: 828 NISIFGPEGEANIDMVSGGEKIAIALALRLGITQAMSK--GNIETILLDEPTIHLDSFRR 885 Query: 332 NALFRIVTDIGS--QIFMTGTDKSVFDSLNETAKFMRISNHQALC 374 L ++ + Q+ + T + ++ +T + + + + Sbjct: 886 QELINVLRSMSIIPQMII-VTHDTELETAADT--LISVEKEEGIS 927 >gi|257784654|ref|YP_003179871.1| chromosome segregation protein SMC [Atopobium parvulum DSM 20469] gi|257473161|gb|ACV51280.1| chromosome segregation protein SMC [Atopobium parvulum DSM 20469] Length = 1179 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 56/294 (19%), Positives = 107/294 (36%), Gaps = 43/294 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L + F+++A ++VFD T+ VG NG GK+N+ +AI ++ + R + Sbjct: 1 MYLKSLTLKGFKSFADKTQMVFDPGLTVVVGPNGSGKSNVSDAILWVLGEQSAKMLRGQA 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS + A V + +D +I ++ + R + IN R Sbjct: 61 MEDVIFSGSSARGAVGVAEVTLVLDNSDHTIPIDFSEIGITRRMYRSGESEYLINGAPSR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD----------------RM 147 ++D L K +D I S +RR ++ R Sbjct: 121 LMDIQDILHDSGLGKDTHSIISQGKLDSILSSRPEQRRELIEEAADISKHRRRKERAERK 180 Query: 148 VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN- 206 + ++D R + + R + L +S + AQ+ +L V++ + + + Sbjct: 181 ISSMDENLTRAKVVSREITRQ-LKPLERQVDKASRAKDLSAQLKDLTVQLAVDDLRQLQF 239 Query: 207 ---ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 L E + S + + QS K + L + R+ Sbjct: 240 AHSKLEVRAKEAEAAIELAQYRAS-EKNRELEKLQSLLEQKGLFVGDLGEQRRR 292 >gi|331266251|ref|YP_004325881.1| chromosome condensation and segregation SMC protein [Streptococcus oralis Uo5] gi|326682923|emb|CBZ00540.1| chromosome condensation and segregation SMC protein [Streptococcus oralis Uo5] Length = 1179 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 106/283 (37%), Gaps = 37/283 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A IK+E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNEDGFIKDAGQVIKVERHIYRSGDSEYRIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR----------VEMINALSSLIM 213 ++ L ++ Q+ L + AR ++ L + I Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLAKQAENARKFLDLDGQRKAIYLDVLVAQIK 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 E + +L+ L + Q L+EE + L R+ Sbjct: 236 ENKAELELTEEELTQVQELLTSYYQKREELEEE-NQSLKKKRQ 277 >gi|86607501|ref|YP_476264.1| chromosome segregation protein SMC [Synechococcus sp. JA-3-3Ab] gi|86556043|gb|ABD01001.1| chromosome segregation protein SMC [Synechococcus sp. JA-3-3Ab] Length = 1180 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 102/293 (34%), Gaps = 50/293 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + ++ F+++ ++ L T+ G NG GK+NIL+ I F LS RG R Sbjct: 1 MYIKRIELTRFKSFGSTTSLPLLPGFTVISGPNGSGKSNILDGILFALGLSSSRGMRAER 60 Query: 61 YADVTRIGS-------PSFFSTFARV----EGMEGLADISIKLETRDDRS--------VR 101 +D+ GS + + + +G +S +L + Sbjct: 61 LSDLVHSGSLSSNRRVETHVAVTFDLGPGEDGQPREWKVSRRLRVSPGKGEDPDSLPYTS 120 Query: 102 CLQINDVVIRVVDELNKHLRISWLVP---------SMDRIFSGLSMERRRFLDRMVFAID 152 INDV + EL++ L + P + I S S ERR+ LD + Sbjct: 121 TFYINDVPC-TLSELHEQLEAMHIYPNGYNVVLQGDVTSIISMNSKERRQILDELAG--- 176 Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 + F+R + N L IE + G ++ S Sbjct: 177 ------VATFDRKIAQANAKLEVVREQIERFRLIEQEWQAQGERLLRE--------SEKA 222 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 +Y Q L + Q+ + ++L + ++ + +TL Sbjct: 223 QQYQQLRLQWQTLERQQRVLLWRHLQAQVEATQAAIRQLLEAQEQATAQVQTL 275 >gi|289582094|ref|YP_003480560.1| SMC domain protein [Natrialba magadii ATCC 43099] gi|289531647|gb|ADD05998.1| SMC domain protein [Natrialba magadii ATCC 43099] Length = 924 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 98/290 (33%), Gaps = 34/290 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-RGFRRASYAD 63 +++ + + F+ Y L + T+ G NG GK+ +LEA+ F G + + D Sbjct: 1 MRVDRVRMLNFKCYGDADLTLERGVTVVHGVNGSGKSTLLEAVFFALYGSKALDDRTLDD 60 Query: 64 VTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRC--------LQINDVVIRVVD 114 V G S + + E + +KL + +C ++ V + V Sbjct: 61 VITTGENESEVELWFTHDNREYHIERHLKLRGDRATTTKCVLETPEDTIEGARDVRKTVT 120 Query: 115 ELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFERLMR 167 EL + +++ ++++ ER+ +D ++ +R R D ++ Sbjct: 121 ELLRMDAEAFVNCAYVRQGEVNKLIHASPSERQDMIDDLLQLGALEEYRERASDARLGVK 180 Query: 168 -----GRNRL--------LTEGYFDSSWCSSIEAQMAELGVKINIA---RVEMINALSSL 211 R L E +++E + EL +I+ R + + L Sbjct: 181 SVLDGQREVLDDVRSQVEQKEEQDLHETLNTLEKERDELTEQIDHYEAQRDQAVETL-ET 239 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 E +++ ++ G + + + R+ Sbjct: 240 AQEVLERHEETREEIETLGEEIDDLQSKITETERDREDAKDEIRERKEAR 289 >gi|308270740|emb|CBX27350.1| hypothetical protein N47_H21720 [uncultured Desulfobacterium sp.] Length = 622 Score = 63.4 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 66/363 (18%), Positives = 129/363 (35%), Gaps = 52/363 (14%) Query: 5 IKIKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + ++ L I+ ++N + + F + VG+NGVGKT I++AI + F R ++ Sbjct: 1 MFLETLEIAGYKNFHKEFTVHFSKGLNVLVGENGVGKTAIIDAIRLILLEDEFGRRGVSE 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL----QINDVVIRVVDELNKH 119 F F I I+ + + +N +D NK Sbjct: 61 ------SDFHCPFQESATPVDTFRIQIQFGDLNREEMVVFLPWSNLNGSAKLTLDVENKQ 114 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFERLMRG-R----NRLL 173 P + G + R + +F I+ + + D E +R R RLL Sbjct: 115 NNQGHFRP----LRWGGAS-RASAFEWELFDTINCIYLPPLRDAEAKLREGRGSRLARLL 169 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTG 230 D ++E ++ + + I + I+ + +I + QKE + +S+ Sbjct: 170 RSLNKDDESQKNVENRVKKFNKDLAIEKTGPISKANEIIRKR-QKEALGTVFGQDISIR- 227 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 F + F++ +L+ + K+ D + + + Y + Sbjct: 228 FSETNFNRIVESLRVLFFPKINSTSNQDLFR-------NLEENSLGYNN----------- 269 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF----RIVTDIGSQIF 346 ++ + LA S + +LL++E AHL + L TD Q+ Sbjct: 270 ---LIYLATVLAELTNESKDAEYLKMLLIEEPEAHLHPQLQLRLLRYLENTATDSSVQVI 326 Query: 347 MTG 349 +T Sbjct: 327 VTT 329 >gi|271499011|ref|YP_003332036.1| SMC domain-containing protein [Dickeya dadantii Ech586] gi|270342566|gb|ACZ75331.1| SMC domain protein [Dickeya dadantii Ech586] Length = 386 Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 56/382 (14%), Positives = 125/382 (32%), Gaps = 55/382 (14%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 IK + ++ F ++ ++ + A + VG NG GK+N+LEAI L R A + Sbjct: 2 IKSIQLTNFLSFGASTQPIELKA-LNVIVGPNGSGKSNLLEAIELL------RNAPDK-L 53 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +G +G ++ + + + L+ E+ + + Sbjct: 54 ITPIRDGGGVNDWLWKGGQGKPTATLNAVFTNPKGPQSLR----YQLSFTEVAQRFEMV- 108 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +RI + + +P + + +N+ D Sbjct: 109 ----DERIENEHPAD---------GHPEPYFYYHFNNARPTLNVKNKKRALQLEDIDLEK 155 Query: 185 SIEAQ------------MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT--G 230 SI AQ +A+ +I + R + H++ + T G Sbjct: 156 SILAQRRDPDQYPEITYLAQELARIRLYREWSFGRYTPPRQPQKADLPNDHLEPTCTNLG 215 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGST 289 + + + +K+ K L D + + + + + + I S Sbjct: 216 LVLNRLRRDPL-VKQRLLKALQALY--DGIDDYDVQIEGGTVQVFFHEGRFTIPATRLSD 272 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 G + + + L H P++ L+E L D L ++ D +Q+ + Sbjct: 273 GTLRYLCLLAVLCH-------PNPPPLICLEEPELGLHPDVLPTLGELLKDASNRTQLIV 325 Query: 348 TGTDKSVFDSLNETAKFMRISN 369 T + D++++ + ++ Sbjct: 326 TTHSDVLVDAMSDQPDAVLVAE 347 >gi|225561077|gb|EEH09358.1| Smc5-6 complex SMC subunit Smc5 [Ajellomyces capsulatus G186AR] Length = 1159 Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 79/270 (29%), Gaps = 21/270 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 I + + +F Y S + + +G NG GK+ ++ AI L G R A+ Sbjct: 127 IVRVKLRDFVTYTSAEFFPGPRLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPAE 186 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLR 121 + G +G + I+ + IN EL K Sbjct: 187 FVKHGCEEATIEIELAKGRNHRENPVIRRTIVRKGNKSTFTINGKPSSKASVLELAKSFS 246 Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 I +P A P+ + D + L + +LL Sbjct: 247 IQIDNLCQFLPQDKVAEFAALSPIELLHSTQRAAAGPQMLQWHEDLKSLRAEQKKLLAAN 306 Query: 177 YFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + +++ +M V+ + R + I + P + ++ + Sbjct: 307 AGEREQLANLVNRQEMQREDVQRMLQR----ARIQKKIAVLERSRPVPRYQEAVQALKEA 362 Query: 235 K-----FDQSFCALKEEYAKKLFDGRKMDS 259 + Q L+ + A L K + Sbjct: 363 QRARRTLQQEHENLENQLAPALKSVNKKEK 392 >gi|241762645|ref|ZP_04760717.1| SMC domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241372783|gb|EER62495.1| SMC domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 468 Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 62/376 (16%), Positives = 125/376 (33%), Gaps = 73/376 (19%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR----ASYAD 63 K ++I FR + F + + VG NG GKT++L++I+ L R +S Sbjct: 11 KKISIKNFRGIQNADFDFCNKVNLIVGINGAGKTSVLDSIALLLSWLINRTLNKNSSGQP 70 Query: 64 V----TRIGS-PSFFSTFARVEGMEG---LADISIKLETRDDRSVRCL--QINDVVIRVV 113 + R G + S + + L L R +S L ++ + Sbjct: 71 INDLSIRNGCREAALSITVNYDNQDFNWMLVKTGRGLNARSQKSELSLLAALSKRFQIEL 130 Query: 114 DELNKHLRISWLV--PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG--- 168 D N + V P I + + RRR + ++ ++ + Sbjct: 131 DNKNDEASLPLFVYYPVDRAIVK-VPIRRRR----------RQAFSQLSAYDEALNPNVN 179 Query: 169 --------RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 R ++ S++ +++ + A I E +++ Sbjct: 180 FKSFFEWFRFEQEKHNSSLANLLHSMD--LSDTDSLLFKA-----TKYRKTIKEILKELY 232 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 P L K ++ C E+ D R + R ++++ Sbjct: 233 NP---------LSSKGLKAVCQAIYEFMPGFSDLRVLYEPLR----------MVIEKEGV 273 Query: 281 AITIAHGSTGEQKVVLVG------IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 + + S GE+ ++ + + LA+ + + G A I+L+DEI HL + + Sbjct: 274 HLNLLQLSGGEKCMLALIGDIARRLVLANPSMDNPLKGKA-IILIDEIDLHLHPRWQKNI 332 Query: 335 FRIVTDI--GSQIFMT 348 + Q +T Sbjct: 333 IERLNSTFPNCQFIIT 348 >gi|315924202|ref|ZP_07920428.1| chromosome segregation protein Smc [Pseudoramibacter alactolyticus ATCC 23263] gi|315622604|gb|EFV02559.1| chromosome segregation protein Smc [Pseudoramibacter alactolyticus ATCC 23263] Length = 1192 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 107/297 (36%), Gaps = 41/297 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L I+ F+++A + L FD VG NG GK+NI++AI ++ + R Sbjct: 1 MHLKSLRITGFKSFADTVELSFDQMIAAIVGPNGSGKSNIIDAIRWVLGEQRSKSLRGKR 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGL---ADISIKLETRDDRSVRCL-QINDVVIR 111 DV GS ++ ++ G + + R RS + +IN +R Sbjct: 61 MEDVIFSGSDYHKPMNYAEVVLTLDNGSGYLADQPDEVSVTRRIFRSGESVYKINGRQVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR------ 157 + D L ++ S++ I + R ++ V ++ + R+ Sbjct: 121 LKDIQAIFADTGLGRNGYSIVGQGSIENIVNSSPQALREIVEEAVGIVNYKMRKQEAERE 180 Query: 158 ---RMIDFERLM-------RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207 + +R++ R R L + + + ++ + + R Sbjct: 181 LTTAQENMDRVLDILEELNRQRKPLEKQSAKAKRYLK-LREELKAVDLFRFDERWR---D 236 Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 LS + + + ++ T D + L+ + +L +++ + T Sbjct: 237 LSDRLAQSDAHIADANAQIKQTEIALHDADARYQRLRVQNRNQLVAQEDLEAQAEST 293 >gi|33578097|gb|AAQ22369.1| chromosomal segregation protein [Methanococcus voltae PS] Length = 1199 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 I +++ F+++ + +L T +G NG GK+N ++ I F+ + + R + Sbjct: 4 ISEIHLKNFKSFKNTKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 + + + +A V + I +++ R +++N Sbjct: 64 LITYHNGKR-ADYAEVTLFFDNINREIPIDSDKVGICRKVKLNG 106 >gi|15669839|ref|NP_248653.1| chromosome segretation protein [Methanocaldococcus jannaschii DSM 2661] gi|18202582|sp|Q59037|SMC_METJA RecName: Full=Chromosome partition protein smc homolog gi|2826443|gb|AAB99663.1| chromosome segretation protein (smc1) [Methanocaldococcus jannaschii DSM 2661] Length = 1169 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 24/163 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 ++ + + F+++ L L T VG NG GK+NI++AI F+ + + R ++ Sbjct: 4 LEKIELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKTSAKKLRANRFSG 63 Query: 64 VTRI----------------GSPSFFSTFARVEGMEGLADISIK-----LETRDDRSVRC 102 + + F+ A G+ S + + +D+ R Sbjct: 64 LITYHNGKRADFAEVCLYFTNENNAFNVNADKVGILRRIKSSGETDYYLVWKENDKEKRK 123 Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 +I + L + +I + +ERR+ +D Sbjct: 124 KMTKHEIIDLFRRLGLLGDNVISQGDLLKIINISPIERRKIID 166 >gi|291527523|emb|CBK93109.1| Predicted ATP-binding protein involved in virulence [Eubacterium rectale M104/1] Length = 430 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 71/386 (18%), Positives = 140/386 (36%), Gaps = 63/386 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---------SPGRG 55 +K+ + + F+ +L + D + T+ G NGVGK+ IL+AI L R Sbjct: 1 MKLNSIILQNFKGIDNLEIKLDNKTTVIFGVNGVGKSTILQAIDLLYADIIAKLMGTVRS 60 Query: 56 FRRASYA-DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 + A + D G S A + +G SI E DR+ + + N ++ + Sbjct: 61 -KTARFNEDFISYG-KSAAGIKADFDFGDGE---SIYYERTIDRA-KGEKRNTSALKKLT 114 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 + + L I + + S + F++ V I + R + + Sbjct: 115 DKFQSLYIQMGYDDGNGNWIEESDNKSMPIFVNYGVNRI------VLDVPVRAPKE--QF 166 Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + FD + S+I+ L EN IK+ Sbjct: 167 VKLDAFDKAIESTID-----------------FRNLFKWFRNQEDIEN--QIKVRNDSDY 207 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + D+S A+K+ L DG + + RR L + V+ K++ I S GE+ Sbjct: 208 E---DKSLAAVKKAMLAML-DGFEDIRIERRPLA------MKVNKNGKSLKIDQLSDGEK 257 Query: 293 KVVL----VGIFLAHARLISNT--TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQ 344 + + +A A + + ++L+DE+ H+ + + ++ D Q Sbjct: 258 CTIALFGDLARRMALANPGKDVNPLEGSGVVLIDELDLHMHTSWQRKVLNVLRDTFPNIQ 317 Query: 345 IFMTGTDKSVFDSLNETAKFMRISNH 370 +T + ++++ + + N Sbjct: 318 FIITTHSPQILGEMDDSVNLLYLYNE 343 >gi|190572118|ref|YP_001969963.1| hypothetical protein Smlt0029 [Stenotrophomonas maltophilia K279a] gi|190010040|emb|CAQ43646.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 575 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +I+ L I FR+ +L +G GK+ IL+AI R R S+ D+ Sbjct: 3 RIRHLAIRNFRSIKALDWSPAPGINCLIGPGDSGKSTILDAIDLCLGAR--RSISFGDMD 60 Query: 66 RIG 68 Sbjct: 61 FFD 63 >gi|227827239|ref|YP_002829018.1| hypothetical protein M1425_0926 [Sulfolobus islandicus M.14.25] gi|229584460|ref|YP_002842961.1| hypothetical protein M1627_0993 [Sulfolobus islandicus M.16.27] gi|238619424|ref|YP_002914249.1| hypothetical protein M164_0973 [Sulfolobus islandicus M.16.4] gi|227459034|gb|ACP37720.1| conserved hypothetical protein [Sulfolobus islandicus M.14.25] gi|228019509|gb|ACP54916.1| conserved hypothetical protein [Sulfolobus islandicus M.16.27] gi|238380493|gb|ACR41581.1| conserved hypothetical protein [Sulfolobus islandicus M.16.4] Length = 110 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 IK L I F++Y F + I VG NG GKTN+++A SFL Sbjct: 2 IKRLRIKNFKSYRDSEFEFG-KVNIVVGPNGSGKTNLVDAFSFL 44 >gi|260437030|ref|ZP_05790846.1| SMC family protein [Butyrivibrio crossotus DSM 2876] gi|292810339|gb|EFF69544.1| SMC family protein [Butyrivibrio crossotus DSM 2876] Length = 1190 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 28/232 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ L FD T VG NG GK+NI +A+ L + R + Sbjct: 1 MYLKKIEVQGFKSFANKLLFEFDNGITGIVGPNGSGKSNIADAVRWVLGEQSAKQLRGSK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ G+ SF S ++ + DI T R R +N R Sbjct: 61 MEDIIFAGTETRKPVSFASVSLTIDNSDKKLDIDYSEVTVTRRVFRSGESEYLLNGNTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG + ERR D + ++R + + Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKAEERRELFDEAAGIVK--FKKRKNETQ 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215 + + ++ L + +E Q+ L + + E + L + +Y Sbjct: 179 KSLDNESQNLIRIN---DILAELEKQVGPLARQ-SDKAKEYL-RLKEYLKKY 225 >gi|251791211|ref|YP_003005932.1| SMC domain-containing protein [Dickeya zeae Ech1591] gi|247539832|gb|ACT08453.1| SMC domain protein [Dickeya zeae Ech1591] Length = 386 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 55/382 (14%), Positives = 125/382 (32%), Gaps = 55/382 (14%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 IK + ++ F ++ ++ + A + VG NG GK+N+LEAI L R A + Sbjct: 2 IKSIQLTNFLSFGASTQPIELKA-LNVIVGPNGSGKSNLLEAIELL------RNAPDK-L 53 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + +G +G ++ + + + L+ E+ + + Sbjct: 54 ITPIRDGGGVSDWLWKGGQGKPTATLNAVFTNPKGPQSLR----YQLSFTEVAQRFEMV- 108 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +RI + + +P + + +N+ D Sbjct: 109 ----DERIENEHPAD---------GHPEPYFYYHFNNARPTLNVKNKKRALQLEDIDLEK 155 Query: 185 SIEAQ------------MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT--G 230 SI AQ +A+ +I + R + H++ + T G Sbjct: 156 SILAQRRDPDQYPEITYLAQELARIRLYREWSFGRYTPPRQPQKADLPNDHLESTCTNLG 215 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGST 289 + + + +K+ K L D + + + + + I S Sbjct: 216 LVLNRLRRDPL-VKQRLLKALQALY--DGIDDYDVQIEGGTVQVFFHEGTITIPATRLSD 272 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 G + + + L H P++ L+E L D L ++ + +Q+ + Sbjct: 273 GTLRYLCLLAVLCH-------PNPPPVVCLEEPELGLHPDVLPTLGELLKEASNRTQLIV 325 Query: 348 TGTDKSVFDSLNETAKFMRISN 369 T + D++++ + ++ Sbjct: 326 TTHSDVLVDAMSDQPDAVLVAE 347 >gi|210612576|ref|ZP_03289367.1| hypothetical protein CLONEX_01569 [Clostridium nexile DSM 1787] gi|210151501|gb|EEA82508.1| hypothetical protein CLONEX_01569 [Clostridium nexile DSM 1787] Length = 1186 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 33/214 (15%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ L F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVQGFKSFANKILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + I + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNSDHQLAIDFEEVTVARKIYRSGESEYLINGSPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIV------------ 168 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197 + + +N + + + + +AEL +I Sbjct: 169 KFKKRKNMSVKKLEEERQNLVRVNDILAELEKQI 202 >gi|39655001|pdb|1US8|A Chain A, The Rad50 Signature Motif: Essential To Atp Binding And Biological Function Length = 147 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 27/43 (62%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +K++ + + FR+++ + F + +G NG GK+++L+AI Sbjct: 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43 >gi|254425299|ref|ZP_05039017.1| RecF/RecN/SMC N terminal domain, putative [Synechococcus sp. PCC 7335] gi|196192788|gb|EDX87752.1| RecF/RecN/SMC N terminal domain, putative [Synechococcus sp. PCC 7335] Length = 1007 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 ++R+ K L + F +Y + L F G NG GK+++LEAI++ G+ R ++ Sbjct: 3 SHRMVPKQLKLQNFLSYQEVVLDFAGLHVACVCGPNGAGKSSLLEAIAWCIWGQS-RVSA 61 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98 D+ R GS +F +G + I + ++ Sbjct: 62 EDDIVRQGSLEAQVSFCFEQGGQSYRIIRTRRRCQNST 99 >gi|9954932|pdb|1F2T|A Chain A, Crystal Structure Of Atp-Free Rad50 Abc-Atpase gi|9954934|pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase gi|9954936|pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase Length = 149 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 27/43 (62%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +K++ + + FR+++ + F + +G NG GK+++L+AI Sbjct: 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43 >gi|169350201|ref|ZP_02867139.1| hypothetical protein CLOSPI_00945 [Clostridium spiroforme DSM 1552] gi|169292984|gb|EDS75117.1| hypothetical protein CLOSPI_00945 [Clostridium spiroforme DSM 1552] Length = 981 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 26/185 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A + + F T VG NG GK+N+ +AI L + R +S Sbjct: 1 MYLKRIELHGFKSFADKVNIEFQPGITGIVGPNGCGKSNVADAIRWVLGEQSVKSLRGSS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG-----LADISIKLETRDDRSVRCLQINDVVI 110 +DV GS + + ++ I + IN Sbjct: 61 MSDVIFAGSEDRRAQNLAEVTLVFDNTDRYMKYDYNEVEITRRLYRQNNEAEYLINKQQC 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159 R + ++ + + L I S ERR + V R + Sbjct: 121 R-LKDIVDLIMDTGLGRDSLSIISQGNISSFADSKPEERRGIFEEAAGVSKYKKRKLESI 179 Query: 160 IDFER 164 ER Sbjct: 180 RKLER 184 >gi|15899022|ref|NP_343627.1| purine NTPase [Sulfolobus solfataricus P2] gi|284175108|ref|ZP_06389077.1| purine NTPase [Sulfolobus solfataricus 98/2] gi|18202628|sp|Q97WH0|RAD50_SULSO RecName: Full=DNA double-strand break repair rad50 ATPase gi|13815551|gb|AAK42417.1| Purine NTPase [Sulfolobus solfataricus P2] gi|261600766|gb|ACX90369.1| Rad50 zinc hook domain protein [Sulfolobus solfataricus 98/2] Length = 864 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I + ++ F ++ + F + + VG NG GK++I++ I S R R + ++ Sbjct: 1 MRIDKITLTNFLSHEHSEIQFMGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R GS T I I + R R ++ + R ++ + Sbjct: 60 IRKGSNRGSVTLYL---SNEKDKIEIIRDIRSTTEDRLIRNQFPIARSATVVSNEIEKIL 116 Query: 125 LVPSMDRI 132 + + Sbjct: 117 GIDKDIAL 124 Score = 44.9 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 24/212 (11%) Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLI 212 + + ++ + S+E + E+ +I R ++INA++ Sbjct: 644 LDAYNLSLKEKEN---RKSRIEGELESLEKDIEEISNRIANYELQLKDREKIINAINK-- 698 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM----SRRTLIGP 268 +E ++ S + ++ +M+ M R+ G Sbjct: 699 LEKIRSALGERKLQSYIIMTTKQLIENNLNDIISKFDLSIKNVEMEIMPKTGRGRSSSG- 757 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 L+ + I S GE+ + + + LA A+ + + T +LDE + HLD+ Sbjct: 758 --DILVYTNSGDTLPIVSLSGGERIALSIALRLAIAKALMSNTN---FFILDEPTIHLDD 812 Query: 329 DKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357 ++ L I+ QI + D+ V + Sbjct: 813 QRKAYLIEIIRAAKESVPQIIVVTHDEEVVQA 844 >gi|134110720|ref|XP_775824.1| hypothetical protein CNBD2340 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258490|gb|EAL21177.1| hypothetical protein CNBD2340 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1156 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 14/124 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK +++ +F + L + F + VG NG GK+ +L AI+ G+ R D Sbjct: 99 IKSISLIDFMCHRHLTVDFGPRMNFVVGHNGSGKSAVLTAIAVALGGKANLTGRGTGLKD 158 Query: 64 VTRIGSPSFFSTFARVEGMEG-----------LADISIKLETRDDRSVRCLQINDVVIRV 112 + R G+ T + + + +I + + + Sbjct: 159 LIRTGAERAVITITLANSGDSAYRPEVYNPNIVIERTIHSNGSSGYKFKASKDGKTIANK 218 Query: 113 VDEL 116 EL Sbjct: 219 RSEL 222 >gi|289192395|ref|YP_003458336.1| chromosome segregation protein SMC [Methanocaldococcus sp. FS406-22] gi|288938845|gb|ADC69600.1| chromosome segregation protein SMC [Methanocaldococcus sp. FS406-22] Length = 1169 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 24/163 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 ++ + + F+++ L L T VG NG GK+NI++AI F+ + + R ++ Sbjct: 4 LEKIELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKTSAKKLRANRFSG 63 Query: 64 VTRI----------------GSPSFFSTFARVEGMEGLADISIK-----LETRDDRSVRC 102 + + F+ A G+ S + + + + R Sbjct: 64 LITYHNGKRADFAEVCLYFSNENNAFNVNADRVGILRRIKSSGETDYYLIWEENGKEKRK 123 Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 VI + L + +I + +ERR+ +D Sbjct: 124 KMAKHEVIDLFRRLGLLGDNVISQGDLLKIINISPIERRKIID 166 >gi|291522184|emb|CBK80477.1| condensin subunit Smc [Coprococcus catus GD/7] Length = 1188 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 98/287 (34%), Gaps = 36/287 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ + F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MFLKSIEVQGFKSFANKMVFEFHKGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S F ++ + + T R R +IN R Sbjct: 61 MEDVIFSGTESRKPLGFAYVAITLDNSDHQLAVEYDTVTVSRRVYRSGESEYKINGHNCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + ++RR E Sbjct: 121 LKDVQELFFDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVK--YKRRKALTE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSL-----IM 213 + + + L+ +E Q+ L +I + + + + Sbjct: 179 KNLAEEQQNLSRVR---DILYELEKQVGPLEKQSETARIYLKHRDTLKQYDANMYLLSFY 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + K+ + ++F +K YA+ + D Sbjct: 236 QLKKDSAAIDEKMDIVSTQLKDAQENFEKIKSAYAQMEALMEQYDQK 282 >gi|123439544|ref|XP_001310542.1| SMC family, C-terminal domain containing protein [Trichomonas vaginalis G3] gi|121892316|gb|EAX97612.1| SMC family, C-terminal domain containing protein [Trichomonas vaginalis G3] Length = 1118 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY 61 +KI+ L + F++Y + + +G N GK+N +AI F+ +P R Sbjct: 1 MKIEKLRLENFKSYQGVHEIGPFDDFVAVIGSNASGKSNCFDAICFVLAAPASSMRCKEL 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 +++ + T A VE + I + + S +N + + L Sbjct: 61 SELICNADDT--ITSASVEMTVRKLNDLIVFKRKVTNSSSTYYVNGSKV-SASDYKDSLN 117 Query: 122 ISWL 125 Sbjct: 118 EVGF 121 >gi|302386300|ref|YP_003822122.1| chromosome segregation protein SMC [Clostridium saccharolyticum WM1] gi|302196928|gb|ADL04499.1| chromosome segregation protein SMC [Clostridium saccharolyticum WM1] Length = 1186 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 101/275 (36%), Gaps = 28/275 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60 + +K + I F+++A+ + F T VG NG GK+N+ +A+ ++ + R ++ Sbjct: 1 MYLKSIEIQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQKVKQLRSSN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ F ++ + I T R R IN R Sbjct: 61 MQDVIFSGTELRKPQGFAYVAITLDNSDHHLAIDYDQVTVSRRVYRSGESEYMINGSACR 120 Query: 112 VVDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D K +D+I SG ERR D + + RR++I + Sbjct: 121 LKDIYELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKLIAQK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 +L + L+ + +E Q+ L + + A E + L + Y + Sbjct: 180 KLEAEKQNLIRVN----DILTELEKQVGPLARQ-SEAAKEYL-RLKEELKRYDVNQFLLE 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 + + ++ + E A++ +G + + Sbjct: 234 TQGIQIQMKENLEKETIVSHDLEDARQASEGIRKE 268 Score = 36.0 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 95/303 (31%), Gaps = 36/303 (11%) Query: 58 RASYADVTRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 + + +R+ E M+ ++ + + + + + + +EL Sbjct: 854 TNGSNSIIEEKQKEIEALKSRIQEEMKRSEELEGIISEKSSQKEASSREQKALFQKREEL 913 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 RIS L + R+ ++ + + M ++ + + RN T Sbjct: 914 TG--RISLLDKELFRL----QSQKEKLEEWMESHVNYMWNEYELTYSTAEELRNEEWTSL 967 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-- 234 S++ ++ +LG A + Q ++ + +L +D Sbjct: 968 PEIKRMIQSLKEEIRKLGNVNVNAIEDYKEVSERYGFMKTQHDDLVSAEATLLKIIDELD 1027 Query: 235 -----KFDQSFCALKEEYAK-----------KLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 +F++ F ++ E+ K L D + I Sbjct: 1028 IGMRKQFEEKFREIRLEFDKVFKELFGGGRGALELVEDEDILEAGIQIISQ------PPG 1081 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 K + S GE+ + + + A +P LLDEI A LD+ + + + Sbjct: 1082 KKLQNMMQLSGGEKALTAIALLFA-----IQNLKPSPFCLLDEIEAALDDSNVDRFAKYL 1136 Query: 339 TDI 341 + Sbjct: 1137 HKL 1139 >gi|327354171|gb|EGE83028.1| Spr18 protein [Ajellomyces dermatitidis ATCC 18188] Length = 1301 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 78/264 (29%), Gaps = 23/264 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 I + +++F Y S + + +G NG GK+ ++ AI L G R A+ Sbjct: 196 IVRVKLTDFVTYTSAEFFPGPRLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPAE 255 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLR 121 + G +G+ + I+ + IN EL K Sbjct: 256 FVKHGCEEAIIEIELAKGINHRENPVIRRTIVRKGNKSTFAINGKPSSKASVLELAKSFS 315 Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 I +P A P + + +R + L Sbjct: 316 IQIDNLCQFLPQDKVAEFAALSPIELLHSTQRAAAGPEMLE-WHENLKTLRAEQKKLQAA 374 Query: 177 YF-DSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + +++E +M V+ + R + I + P + ++ F + Sbjct: 375 NAGEREQLANLESRQEMQREDVERLLQR----ARIQKKIALLERSRPVPRYQEAVQSFRE 430 Query: 234 GK-----FDQSFCALKEEYAKKLF 252 + Q L+ + A L Sbjct: 431 AQHKRRNLQQEHGDLENQLAPALK 454 >gi|261417074|ref|YP_003250757.1| SMC domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373530|gb|ACX76275.1| SMC domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326883|gb|ADL26084.1| conserved hypothetical protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 427 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 12/124 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAI-----SFLSPGRGFRR 58 +++K L I FR +L L F ++ +F G NG GKT +L A+ +++ + + Sbjct: 1 MRVKKLRIENFRGIKNLDLDFSNSKMVVFAGINGAGKTTVLVAMQFLFSWYVARLKSPKG 60 Query: 59 A--SYADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 S +D G P F VE + G D ++ R+ + N E Sbjct: 61 KGLSLSDCDITNGEPYAFIEIEVVEKI-GEQDQVVRWSLFKKRT--SYRKNIERQASRAE 117 Query: 116 LNKH 119 LN + Sbjct: 118 LNNY 121 >gi|229825032|ref|ZP_04451101.1| hypothetical protein GCWU000182_00382 [Abiotrophia defectiva ATCC 49176] gi|229790779|gb|EEP26893.1| hypothetical protein GCWU000182_00382 [Abiotrophia defectiva ATCC 49176] Length = 1186 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 109/322 (33%), Gaps = 46/322 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I F+++A+ + F+ T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSVEIQGFKSFANKIVFSFEGGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGSK 60 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G + SF ++ + + I + T R R IN R Sbjct: 61 MEDVIFSGTEIRKAQSFAYVAITIDNSDKVLPIDYEEVTVARRVYRSGESEYLINGHNCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +++I SG +RR D ++R + Sbjct: 121 LKDVGELFLDTGIGKEGYSIIGQGQIEKIISGRPEDRRELFDEAAGITK--FKKRKAESI 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM----INALSSLIM 213 + + + L+ S +E Q+ AE R E+ I + Sbjct: 179 KNLEEESANLSRVN---DIMSELERQIGPLSKQAEAAKLYLNYRDELKKYEIINFINEYD 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 + +L + D + +KEEY K + + H ++ Sbjct: 236 HIAETRAKAETDKNLAENNLKEADARYEDIKEEYEK--LENVLNEKAE-------HIDEV 286 Query: 274 IVDYCDKAITIAHGSTGEQKVV 295 DK + GE K++ Sbjct: 287 TKLISDKQVAREKA-EGELKLI 307 >gi|297619488|ref|YP_003707593.1| chromosome segregation protein SMC [Methanococcus voltae A3] gi|297378465|gb|ADI36620.1| chromosome segregation protein SMC [Methanococcus voltae A3] Length = 1199 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 44/104 (42%), Gaps = 4/104 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 I +++ F+++ + +L T +G NG GK+N ++ I F+ + + R + Sbjct: 4 ISEIHLKNFKSFKNTKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 + + +A V + I +++ R +++N Sbjct: 64 LITYH-NGKRADYAEVTLFFDNNNREIPIDSDKVGICRKVKLNG 106 >gi|226322325|ref|ZP_03797843.1| hypothetical protein COPCOM_00086 [Coprococcus comes ATCC 27758] gi|225209247|gb|EEG91601.1| hypothetical protein COPCOM_00086 [Coprococcus comes ATCC 27758] Length = 476 Score = 63.0 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 43/280 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60 + +K + + F+++A+ + F T VG NG GK+N+ +A+ ++ + R + Sbjct: 1 MYLKSIEVQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQKVKQLRGGT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + + + + R IN V R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNSDHKLPVEFEEVKVTRKLYRSGESEYLINGSVCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ + Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKALS-LR 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM-----------IN 206 +L ++ L+ +E Q +E + R E+ + Sbjct: 180 KLEEEQSNLVRVN----DILGELEKQFGPLQKQSETAKEYLKKREELKHYDINMFLVEMK 235 Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 L I E +K +L+ G + +++E Sbjct: 236 RLKGQIRENDEKLKIAQNELTEAGKKHEDMKAQYEKIEQE 275 >gi|148557587|ref|YP_001265169.1| chromosome segregation protein SMC [Sphingomonas wittichii RW1] gi|148502777|gb|ABQ71031.1| chromosome segregation protein SMC [Sphingomonas wittichii RW1] Length = 1140 Score = 63.0 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 84/234 (35%), Gaps = 37/234 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++ + L +S F+++ L+ + T VG NG GK+N+LEAI ++ S + R Sbjct: 1 MRFRKLRLSGFKSFVEPAELIIERGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGGG 60 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLA--DISIKLETRDDRS-VRCLQINDVVIRV 112 DV G + F E E A D +++ R +R ++N +R Sbjct: 61 MEDVIFAGTTTRPARDFAEVTLFTERPEAEADEDREVEVTRRIERGAGSAYRMNGRDVRQ 120 Query: 113 VDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDRMVF----AIDPR------ 154 D L P++ + + ERR+ L+ + + Sbjct: 121 KDVGLLFADAATGAHSPALVSQGRIAAVIAAKPAERRQMLEEAAGIAGLHVRRKDAEQKL 180 Query: 155 -----HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ--MAELGVKINIAR 201 + R+ D M R L + ++ Q +AE + + R Sbjct: 181 RATETNLARLDDLIADMENRTASLRRQARAAERYKALSEQIRLAEARLIYSRWR 234 >gi|117620939|ref|YP_856566.1| RecF/RecN/SMC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562346|gb|ABK39294.1| RecF/RecN/SMC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 556 Score = 63.0 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 77/411 (18%), Positives = 162/411 (39%), Gaps = 61/411 (14%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSP--------G 53 NR + +N+ FR + S+++ ++ T+F+G NG+GKT I++AIS LS G Sbjct: 68 NRFVLSEINLVNFRRFDSIKVRLESNVTVFIGGNGIGKTTIIDAISKVLSWIVSGIEKEG 127 Query: 54 RGFRRASYADVTRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 + Y ++ F A E G++ + +I R N V ++ Sbjct: 128 KNGSPIKYQEINNNEQCYFSDVNALFEFGIKTKVNGTISRSKLGTAEKRDS--NVVELKS 185 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 + + + + + P IF + ++I H + + +++ + L Sbjct: 186 IANVWRVINS--INPINLPIF-------------LCYSIARSHPAKRSN-RPIVKEPS-L 228 Query: 173 LTEGYFDSSWCSSIE---------AQMAEL----------GVKINIARVEMINALSSLIM 213 L + FD ++ +++ EL + + A+V + LSS+ Sbjct: 229 LRKSRFD-AYSGALDGAGKIDDFIEWFIELHKKTSNNGFFDIDLLEAQVRKLKILSSMDA 287 Query: 214 EYVQKENFPHIKLSLT--GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 ++++ + I LSL DG+F+ + ++ + ++++ T G Sbjct: 288 DFIEMYDQKIIDLSLAKNNMQDGEFENNLKQMRTVVDAVVKVVPSIENIWVETSSG--SD 345 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL-----ISNTTGFAPILLLDEISAHL 326 ++ V + + S G++ ++ + LA + ISN I+L+DEI HL Sbjct: 346 EVKVRNDGGIVNFSQLSDGQRVLLSLVADLARRLVMLNPNISNPLEGQGIVLIDEIELHL 405 Query: 327 DEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETA-KFMRISNHQALC 374 + + + D Q +T + ++++ + I H AL Sbjct: 406 HPAWQQGIVLALKDAFPNIQFILTTHSPQILSTIDKKCIRQFYIDEHGALQ 456 >gi|261402663|ref|YP_003246887.1| chromosome segregation protein SMC [Methanocaldococcus vulcanius M7] gi|261369656|gb|ACX72405.1| chromosome segregation protein SMC [Methanocaldococcus vulcanius M7] Length = 1172 Score = 63.0 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 27/166 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 ++ + + F+++ L L T VG NG GK+NI++AI F+ + + R ++ Sbjct: 4 LEKIELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKTSAKKLRANKFSG 63 Query: 64 VTRI----------------GSPSFFSTFARVEGMEGLADISIK--------LETRDDRS 99 + F TF G+ K + +D+ Sbjct: 64 LITYHNGKRADFAEVCIYFLNENDTFKTFNINADRVGILRRIKKSGESNYYLIWKDNDKE 123 Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 R +I + +L + RI + +ERR+ +D Sbjct: 124 KRRKMSKQEIIDLFRKLGLLGNNVISQGDLLRIINVSPIERRKIID 169 >gi|116873239|ref|YP_850020.1| chromosome segregation SMC protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742117|emb|CAK21241.1| chromosome segregation SMC protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1186 Score = 63.0 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 88/272 (32%), Gaps = 49/272 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLVLENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S ERR + ++ ++ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217 + L E + +E Q+ L + + I + Q Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +E +++L +++E+ + Sbjct: 219 QEELEKYEVTLLASEISSLTTKLAEVRQEFGE 250 >gi|77465761|ref|YP_355264.1| hypothetical protein RSP_3757 [Rhodobacter sphaeroides 2.4.1] gi|77390179|gb|ABA81363.1| Conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 532 Score = 63.0 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 66/371 (17%), Positives = 120/371 (32%), Gaps = 51/371 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ I +R + F+ + + VG+N GK+ +LEAI G+ + + Sbjct: 1 MFIQRAVIRNYRCLKQANVTFNDKLNVIVGNNECGKSTLLEAIHLALTGQ----LNGRPL 56 Query: 65 TRIGSPSFFSTFARVEGMEGLA--------DISIKLETRDDRSVRCLQINDVVIRVVDEL 116 P F+ +E +E L I I++ DD ++ L+ N+ + + +L Sbjct: 57 QIELHPHLFNLDLVLEYIEALKAGRAPAPPSILIEVYLADDPALTKLKGNNNTLGL--DL 114 Query: 117 NKHLRISWLVP---SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 + L P + E R + ++ R L Sbjct: 115 PGVALLIDLNPAYAEDFAQYVSDPSEIRTIPMEYYWIKWRDFAE-----NDILNSRVIPL 169 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARV---EMINALSSLIMEYVQKENFPHIKLSLTG 230 D+S + A + + I + E ++ + + + P +K Sbjct: 170 HASLIDASTIKN-NAAASRYVIDIVKESLTSKEKVDLALTYRLMKDRFLEEPKVKAINDA 228 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 K S + + M PH D+ + K G Sbjct: 229 LAAKKGKISDKVISVSLDTSARANWEAGIM-------PHLDDIPLPLVGK---------G 272 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMT 348 EQ V + LA T+ + I+L++E HL N L + QIF+T Sbjct: 273 EQNSVKI--KLA-----METSAKSHIILIEEAENHLSYASLNELIGHIAANAGSRQIFIT 325 Query: 349 GTDKSVFDSLN 359 V + L Sbjct: 326 THSSFVLNKLG 336 >gi|167756879|ref|ZP_02429006.1| hypothetical protein CLORAM_02428 [Clostridium ramosum DSM 1402] gi|167703054|gb|EDS17633.1| hypothetical protein CLORAM_02428 [Clostridium ramosum DSM 1402] Length = 981 Score = 63.0 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 114/335 (34%), Gaps = 59/335 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A + + F T VG NG GK+NI +A+ L + R A+ Sbjct: 1 MYLKRIELHGFKSFADKVNVEFQPGITGIVGPNGCGKSNISDAVRWVLGEQSVKSLRGAN 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ---------INDVVI 110 +DV GS A V + +D +K + + R L IN Sbjct: 61 MSDVIFAGSEDRRAQNLAEVTLVFDNSDRFMKYDYNEVEITRRLYRMNNEAEYLINKQSC 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159 R + ++ + + L I S ERR + V R + Sbjct: 121 R-LKDIIDLIMDTGLGKDSLSIISQGNISSFADNKPEERRGIFEDAAGVSKYKKRKLESI 179 Query: 160 IDFERL-------------MRGRNRLLTEGYFDSSWCSSIEAQMAE-----LGVKINIAR 201 ER + + L + +++ ++ L +I A Sbjct: 180 RKLERTNENLERIGDIVVELEKQVGPLKRQKDKAEKYLALKEKLTAIEVNVLINEITEA- 238 Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-------FDQSFCALKEEYAKKLFD- 253 + ++ LS +I + +++ + L + + DQ AL+ + + + + Sbjct: 239 KKSLDELSKVIKDLNERQASLEADILLKESSNDEIKKKMFTLDQEINALQSKLLEAVSNV 298 Query: 254 ------GRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 ++D + L + +L + + Sbjct: 299 SKLETAKVEVDQKRKHALETLSKENLKENIANMKA 333 >gi|332977618|gb|EGK14386.1| SMC domain protein [Psychrobacter sp. 1501(2011)] Length = 1301 Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 36/215 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L ++ F+++A+ F T VG NG GK+N+++AI ++ S + R + Sbjct: 1 MRLKSLKLAGFKSFANPTTFTFRHGITAIVGPNGCGKSNVIDAIRWVLGESSAKQLRGGA 60 Query: 61 YADVTRIGSPS-FFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105 +DV G+ + + A VE + I +L + SVR I Sbjct: 61 MSDVIFAGTQNKAAKSVASVELTFEHTQDEQTGIRHELNLYHELSVRRQINVEGKSDYFI 120 Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157 N R D L + RI + R F++ Sbjct: 121 NGTRCRRRDVVDVFLGTGLGPRSYSVIQQGMIGRIVDSSPQQLREFIEEAAG-------- 172 Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 + ++ + L + + + IEA+++ Sbjct: 173 -VSRYQARREETQKKLLKTRENLERLNDIEAELSR 206 >gi|326791865|ref|YP_004309686.1| hypothetical protein Clole_2789 [Clostridium lentocellum DSM 5427] gi|326542629|gb|ADZ84488.1| hypothetical protein Clole_2789 [Clostridium lentocellum DSM 5427] Length = 540 Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 38/126 (30%), Gaps = 8/126 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KIK L I + L A + G GKT+ILEAI ++V Sbjct: 1 MKIKRLAIKNYVGVKELEWSPKAGVNVLKGVKASGKTSILEAIETAFTNL----KRRSEV 56 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R G EG+E I + IN EL K + Sbjct: 57 VRHGEDEATLYVETDEGLEIDRRIRTEKSDYMKLRQEGKAINSTE----SELRKLISGDI 112 Query: 125 LVPSMD 130 P Sbjct: 113 FRPLDF 118 >gi|307704937|ref|ZP_07641828.1| chromosome segregation protein SMC [Streptococcus mitis SK597] gi|307621551|gb|EFO00597.1| chromosome segregation protein SMC [Streptococcus mitis SK597] Length = 1179 Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 109/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + + +L+ L + Q L++E + L R+ Sbjct: 238 KVELDSTEEELAQVQELLTSYYQKREKLEKE-NQTLKKQRQ 277 >gi|254556513|ref|YP_003062930.1| DNA repair protein RecN [Lactobacillus plantarum JDM1] gi|254045440|gb|ACT62233.1| DNA repair protein RecN [Lactobacillus plantarum JDM1] Length = 564 Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 69/407 (16%), Positives = 134/407 (32%), Gaps = 61/407 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I+ F L + F+A T+ G+ G GK+ I++A+ L+ GRG A+ R Sbjct: 2 LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SAEFIR 56 Query: 67 IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIR-- 111 G+ + E AD ++ L+ +S R +IN +++ Sbjct: 57 TGADKAVLQGMFILPADGVTAQLLDEAGIEHADNTVILQREITKSGRNTCRINGMLVNTT 116 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-------RRRMIDFER 164 + ++ + + + + LD A + R R Sbjct: 117 TLKQIGETIVDIHGQNEHQELMQ--PEKHLGLLDEFATAKIRKLKQRYQQQYDRYQQLNR 174 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 +R +N E + Q+ E+ E ++ Q N + Sbjct: 175 ELRQKNANEKEWAQR---LDMLNFQVDEIAAAQVKVGEEASLTAERDRLDNYQMINQA-L 230 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLIVDYCD 279 + S T G+ + L +D + D + Sbjct: 231 QQSYTLLAAGEETTGAVDMVGTAMNALEPIANLDPAFNEITVNVKNAFYGLQDAAGQISN 290 Query: 280 KAITIAHGSTG-----EQKVVLVGIFLAHARLISNTTGFAPILLLD---EISAHL----- 326 + G EQ++ ++ + G + +LD +I+A L Sbjct: 291 QLDLQEFD-EGRLDEIEQRLDVLA-------QLKRKYGDSEQQILDYYQKIAAELSKMTD 342 Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 E+ L + V D+ Q+ TG +++ D AK ++ HQ L Sbjct: 343 SEENSEDLAQRVADLKQQLLTTG--EALSDKRRAAAKVLQRQIHQEL 387 >gi|50289173|ref|XP_447016.1| hypothetical protein [Candida glabrata CBS 138] gi|49526325|emb|CAG59949.1| unnamed protein product [Candida glabrata] Length = 1110 Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK L + F + + + VG NG GK+ IL AI+ + R +S D Sbjct: 80 IKKLTLHNFMCHRNFDVELGPGLNFIVGKNGSGKSAILTAITIGLGAKASETNRGSSLKD 139 Query: 64 VTRIGSPS 71 + G S Sbjct: 140 LITAGCNS 147 >gi|28378306|ref|NP_785198.1| DNA repair protein RecN [Lactobacillus plantarum WCFS1] gi|28271141|emb|CAD64046.1| DNA repair protein RecN [Lactobacillus plantarum WCFS1] Length = 564 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 69/407 (16%), Positives = 134/407 (32%), Gaps = 61/407 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I+ F L + F+A T+ G+ G GK+ I++A+ L+ GRG A+ R Sbjct: 2 LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SAEFIR 56 Query: 67 IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIR-- 111 G+ + E AD ++ L+ +S R +IN +++ Sbjct: 57 TGADKAVLQGMFILPADGVTAQLLDEAGIEHADNTVILQREITKSGRNTCRINGMLVNTT 116 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-------RRRMIDFER 164 + ++ + + + + LD A + R R Sbjct: 117 TLKQIGETIVDIHGQNEHQELMQ--PEKHLGLLDEFATAKIRKLKQRYQQQYDRYQQLNR 174 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 +R +N E + Q+ E+ E ++ Q N + Sbjct: 175 ELRQKNANEKEWAQR---LDMLNFQVDEIAAAQVKVGEEASLTAERDRLDNYQMINQA-L 230 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLIVDYCD 279 + S T G+ + L +D + D + Sbjct: 231 QQSYTLLAAGEETTGAVDMVGTAMNALEPIANLDPAFNEITVNVKNAFYGLQDAAGQISN 290 Query: 280 KAITIAHGSTG-----EQKVVLVGIFLAHARLISNTTGFAPILLLD---EISAHL----- 326 + G EQ++ ++ + G + +LD +I+A L Sbjct: 291 QLDLQEFD-EGRLDEIEQRLDVLA-------QLKRKYGDSEQQILDYYQKIAAELAKMTD 342 Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 E+ L + V D+ Q+ TG +++ D AK ++ HQ L Sbjct: 343 SEENSEDLAQRVADLKQQLLTTG--EALSDKRRAAAKVLQRQIHQEL 387 >gi|266623887|ref|ZP_06116822.1| putative cell division protein Smc [Clostridium hathewayi DSM 13479] gi|288864300|gb|EFC96598.1| putative cell division protein Smc [Clostridium hathewayi DSM 13479] Length = 1193 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 28/232 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60 + +K + I F+++A+ + F T VG NG GK+N+ +A+ ++ + R +S Sbjct: 8 MYLKSIEIQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQKVKQLRSSS 67 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ F S ++ + I T R R IN R Sbjct: 68 MQDVIFSGTETRKPQGFASVAITLDNSDHQLAIDYDQVTVTRRVYRSGESEYMINGSTCR 127 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ + + Sbjct: 128 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKAIAQ-K 186 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215 +L + L+ + S +E Q+ L + + A E + L + +Y Sbjct: 187 KLEDEKQNLVRV----TDILSELEKQVGPLAKQ-SEAAKEYL-RLKEDLKKY 232 >gi|237734589|ref|ZP_04565070.1| chromosome segregation ATPase [Mollicutes bacterium D7] gi|229382409|gb|EEO32500.1| chromosome segregation ATPase [Coprobacillus sp. D7] Length = 981 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 114/335 (34%), Gaps = 59/335 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A + + F T VG NG GK+NI +A+ L + R A+ Sbjct: 1 MYLKRIELHGFKSFADKVNVEFQPGITGIVGPNGCGKSNISDAVRWVLGEQSVKSLRGAN 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ---------INDVVI 110 +DV GS A V + +D +K + + R L IN Sbjct: 61 MSDVIFAGSEDRRAQNLAEVTLVFDNSDRFMKYDYNEVEITRRLYRMNNEAEYLINKQSC 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159 R + ++ + + L I S ERR + V R + Sbjct: 121 R-LKDIIDLIMDTGLGKDSLSIISQGNISSFADNKPEERRGIFEDAAGVSKYKKRKLESI 179 Query: 160 IDFERL-------------MRGRNRLLTEGYFDSSWCSSIEAQMAE-----LGVKINIAR 201 ER + + L + +++ ++ L +I A Sbjct: 180 RKLERTNENLERIGDIVVELEKQVGPLKRQKDKAEKYLALKEKLTAIEVNVLINEITEA- 238 Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-------FDQSFCALKEEYAKKLFD- 253 + ++ LS +I + +++ + L + + DQ AL+ + + + + Sbjct: 239 KKSLDELSKVIKDLNERQASLEADILLKESSNDEIKKKMFTLDQEINALQSKLLEAVSNV 298 Query: 254 ------GRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 ++D + L + +L + + Sbjct: 299 SKLETAKVEVDQKRKHALETLSKENLKENIANMKA 333 >gi|18978215|ref|NP_579572.1| chromosome segregation protein smc [Pyrococcus furiosus DSM 3638] gi|18894028|gb|AAL81967.1| chromosome segregation protein smc [Pyrococcus furiosus DSM 3638] Length = 1291 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 33/253 (13%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 I+ L + F++Y + + F T VG NG GK+NI +AI F+ G R + Sbjct: 118 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 177 Query: 62 ADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRVV 113 +D+ GS + +A V D ++ + R + + Sbjct: 178 SDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATR 237 Query: 114 DELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 E+ L + + P I +ERR +D + + E+ Sbjct: 238 SEILDILTAAMISPDGYNIVLQGDITKFIKMSPLERRLLIDDISGIAEYD-----SKKEK 292 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQKENFP 222 + L + + + + ++ + K+ R + + L + + Sbjct: 293 ALEE----LKQAEENLARVDLLIKEVKKQLDKLEKERNDALRYLDLKDKLEKAKVSLLLG 348 Query: 223 HIKLSLTGFLDGK 235 IK+ T +G+ Sbjct: 349 EIKILETQIKEGE 361 Score = 36.8 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 8/79 (10%) Query: 272 DLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 ++ K + S GE+ + + A AP L DEI AHLD+ Sbjct: 1167 EIEAKPAGKDVKRIEAMSGGEKALTALAFVFA-----IQKFKPAPFYLFDEIDAHLDDAN 1221 Query: 331 RNALFRIVTD--IGSQIFM 347 + ++ + SQ + Sbjct: 1222 VKRVADLIKESSKESQFIV 1240 >gi|323702684|ref|ZP_08114345.1| chromosome segregation protein SMC [Desulfotomaculum nigrificans DSM 574] gi|323532347|gb|EGB22225.1| chromosome segregation protein SMC [Desulfotomaculum nigrificans DSM 574] Length = 1187 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 85/236 (36%), Gaps = 36/236 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L+I F+++A ++L + T+ VG NG GK+NI +AIS+ R + Sbjct: 1 MCLKRLDIQGFKSFADRIKLELNPGLTVVVGPNGSGKSNISDAISWCLGEQRASSLRGSR 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV GS ++ L + I + R RS IN V R Sbjct: 61 MEDVIFAGSDKRKPVGMAEVTLTLDNANKLFPLPYEEISVSRRLYRSGESEYLINKVPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + +D I S ERR ++ ++ + Sbjct: 121 LKDIQALFMDTGLGRGAYSLIGQGKVDEILSSRPEERRSVIEE---------AAGIVKYR 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAE----LGVKINIARVEMINALSSLIMEY 215 R LT D + S I ++A+ L ++ AR N L + Sbjct: 172 HRKEEAERKLTAAQQDLNRISDIIHELADRIEPLSLQAEKARQ--FNRLQKELHHI 225 >gi|86608260|ref|YP_477022.1| DNA repair protein RecN [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556802|gb|ABD01759.1| DNA repair protein RecN [Synechococcus sp. JA-2-3B'a(2-13)] Length = 568 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 7/148 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGFRRASYADV 64 ++ L I F L + F A + G+ G GK+ IL+A+ + R R S + Sbjct: 2 LRLLRIENFALIEQLEIPFRAGLNVLTGETGAGKSIILDALDAALGGTARALRTGSERGL 61 Query: 65 TR-----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 + ++ +E S +L R+ + L++N V++ LN Sbjct: 62 VEAIFSPNPELQAWLEQEHIDPLEEGLVCSRELVLRNGKLTSRLRVNGVLVNKAQMLNLR 121 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRM 147 ++ + + +RR+LD Sbjct: 122 AKLVEITAQGQTVQIQSPQTQRRWLDDF 149 >gi|270292631|ref|ZP_06198842.1| conserved hypothetical protein [Streptococcus sp. M143] gi|270278610|gb|EFA24456.1| conserved hypothetical protein [Streptococcus sp. M143] Length = 1179 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 105/283 (37%), Gaps = 37/283 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A +VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTRVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A IK+E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNEDGFIKDAGQVIKVERHIYRSGDSEYRIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR----------VEMINALSSLIM 213 ++ L ++ Q+ L + AR ++ L + I Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLAKQAENARKFLDLDGQRKAIYLDVLVAQIK 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 E + +L+ L + Q L+EE + L R+ Sbjct: 236 ENKAELELTEEELTQVQELLTSYYQKREELEEE-NQTLKKKRQ 277 >gi|255513351|gb|EET89617.1| SMC domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 1133 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 89/272 (32%), Gaps = 30/272 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASY 61 + + + I F+++ + F +G NG GK+NI ++I F R + Sbjct: 2 LYVDKVIIHNFKSFRHSVIRFSRGFNCIIGPNGSGKSNIFDSILFGFGESSLKRIRAHAT 61 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHL 120 D+ G+ S + D IK++ + + ++ND + L Sbjct: 62 TDLISRGASSKGKANYSYVTIFLGGDKEIKIKRVVFSNGKIKYKLNDRRSSRQEILETLH 121 Query: 121 RISWLVPSMDRIFSGL--------SMERRRFLDR--MVFAIDPRHRRRMIDFERL----- 165 + + I G ERR +D + D + + + E++ Sbjct: 122 SYGCYINETNTIAQGEIARISELNHKERRGLIDIAAGIEEFDSKKVAALKELEKVEEKIN 181 Query: 166 -----MRGRNRLLTEGYFDSSWCS---SIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217 + R L E + ++ + + +L I AR N + + + V+ Sbjct: 182 GAKIQLHERQGFLNELKREKESAEKYIALNSLIKDLNYTILKARE---NDVENEYSKVVE 238 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +L K D+ L E A Sbjct: 239 SLYLGKKQLDSLNAEKSKLDEELLELSREKAS 270 >gi|332535595|ref|ZP_08411363.1| type I restriction-modification system, specificity subunit S [Pseudoalteromonas haloplanktis ANT/505] gi|332034979|gb|EGI71500.1| type I restriction-modification system, specificity subunit S [Pseudoalteromonas haloplanktis ANT/505] Length = 877 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 61/383 (15%), Positives = 137/383 (35%), Gaps = 36/383 (9%) Query: 4 RIKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 ++KIK L + +R + S ++ F D+ T+ +G+NGVGK++ILEA + G Sbjct: 428 QLKIKNLTLKNYRAFESFKMNFSDSNVTVIIGNNGVGKSSILEATALSLSG-------LI 480 Query: 63 DVTR-IGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVD-ELNK 118 R + + A + E A + +KL+ I + + E Sbjct: 481 AKIRTKNGKAANISQADIRNEEVSATLEVKLDDLRTSSPINYHWIIAGTRVGLQSNESGS 540 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + ++++L + + S + +++ +D + ++F R Sbjct: 541 YTQLNYLAENFRNEITSSSEASLPLI--VLYGVDRVTKGVKMNFLESKTDRFEAYESPPH 598 Query: 179 DSSWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 S+ C+ I I + ++ + AL + + EN + L + + Sbjct: 599 KSASCNEIFDW-IHYRDNIQNEKNIGLQSLKALEQNLRDSGLDENSIRDSIELVKYREPV 657 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 A+ + + G + + R + + D + I S GE+ + Sbjct: 658 LLAVKSAISKFIPEISEIGVEREPEVR----------IFLIKNDTKVYIDQLSQGEKGIF 707 Query: 296 LV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMT 348 + L+ + + ++L+DE+ HL + + +T Q +T Sbjct: 708 CLVADISRRLSILNPHLKDPLKGGGVVLIDEVELHLHPAWQQKIIENLTTCFPNIQFILT 767 Query: 349 GTDKSVFDSL-NETAKFMRISNH 370 V ++ N+ + + + Sbjct: 768 SHSPQVLTTVKNKDIRLFELEDG 790 >gi|225851132|ref|YP_002731366.1| putative DNA double-strand break repair protein Rad50 [Persephonella marina EX-H1] gi|225645387|gb|ACO03573.1| putative DNA double-strand break repair protein Rad50 [Persephonella marina EX-H1] Length = 893 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 5 IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + +K + + F + + F D T+F+G+NG GK++I+E IS+ G+ + + D Sbjct: 1 MILKRIYLKNFLTHTETEINFPDKGITVFIGENGAGKSSIIEGISYALYGKTSKG-NLQD 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100 + + G ++G E I + + ++V Sbjct: 60 IVQWGKNEAKVELDFIKGGE-TYRIERVVSIKGKKAV 95 Score = 44.1 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 12/92 (13%) Query: 290 GEQKVVL-VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-----S 343 G Q+ L + + LA R +S+ +L+LDE + HLD+ +R+ L ++ ++ Sbjct: 807 GGQRTALGIALRLAIGRFLSS---KNEVLILDEPTVHLDDQRRSELINLLLELKRKNFVR 863 Query: 344 QIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 Q+ + D V D+ + + + I Sbjct: 864 QLIIVTHDTEVEDAADN---IYYVESGTVKSI 892 >gi|225076209|ref|ZP_03719408.1| hypothetical protein NEIFLAOT_01246 [Neisseria flavescens NRL30031/H210] gi|224952460|gb|EEG33669.1| hypothetical protein NEIFLAOT_01246 [Neisseria flavescens NRL30031/H210] Length = 105 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDA----QHTIFVG-DNGVGKTNILEAISFL 50 + IK + + F++YA F ++ I VG +NG GKT +LEAI Sbjct: 1 MYIKRIKLKNFKSYAEAEFEFPPPEKGRNLILVGAENGHGKTTLLEAIYLC 51 >gi|306815655|ref|ZP_07449804.1| SMC domain-containing protein [Escherichia coli NC101] gi|305851317|gb|EFM51772.1| SMC domain-containing protein [Escherichia coli NC101] Length = 570 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 52/348 (14%), Positives = 119/348 (34%), Gaps = 34/348 (9%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +++I L + FRN+ + F+ T+ +G N +GK+N+L R Sbjct: 6 KLEISSLKLKGFRNFKDAFINFNYN-TLIIGSNDIGKSNML---------HSLRILLDKS 55 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + +E +I I + +D L I + E ++ S Sbjct: 56 L-SESEIEPDELDFHLENGTPCEEIEIIVHFKDINEDAVLSILKGNVSDSGE--SFIKYS 112 Query: 124 WLVPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + + ++F G S+E + I+ R+ + ++ + + R L + Sbjct: 113 AIKSDLSYKLFIGSSLE-------SLQEINSRYYLKFVNLKYIQSQR-DLEKFIRKEKRQ 164 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 I Q G ++ +++ +SS + K + +L + Sbjct: 165 LLKIAQQSLTPGERVED--DDLLREISSDLQVINDKIS----QLIYVERATKDVNDEIKK 218 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L Y++ + + I L + ++ G G +L+ ++ A Sbjct: 219 LAHHYSE-----YSVQLDTGVIGINEFIDSLQLGANSNGSSVMLGGDGRNNQILLALWKA 273 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTG 349 + + +++E AHL ++ L + T++ Q ++ Sbjct: 274 KSIREHDIDNEVIFYVIEEPEAHLHPHQQRKLADYLTTELPGQTIISS 321 >gi|21227133|ref|NP_633055.1| chromosome partition protein [Methanosarcina mazei Go1] gi|20905464|gb|AAM30727.1| Chromosome partition protein [Methanosarcina mazei Go1] Length = 1175 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 97/272 (35%), Gaps = 45/272 (16%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + F+++ +R+ F T G NG GK+NI++ I F L+ R R Sbjct: 1 MYIKEIEFVNFKSFGKKVRISFYNDFTTISGPNGSGKSNIIDGILFALGLTSSRTLRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD---DRSVRCLQI--------NDVV 109 D+ G + FA+V AD + LE + R VR + N Sbjct: 61 LTDLIYNGDEAKKPDFAQVTIRFDNADRKLPLELDEIEVSRKVRRTKNAYYSYFYFNGKA 120 Query: 110 IRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 + + E++ L + + P + +I S S+ERR+ +D + + Sbjct: 121 V-SLGEIHSQLAKAGVTPEGYNVVMQGDVTQIISMTSVERRKIIDEIAGVAEFD------ 173 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 + Q+ + + + R + + LS + ++ ++ Sbjct: 174 -------------ERKQKALGELEIVRQQIERVDIILEEVRTQ-LEKLSGERDQALKYQS 219 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252 K+ G++ + E K+L Sbjct: 220 LKSEKVKFEGYVLLSKLKDARTELENVDKELA 251 >gi|117923322|ref|YP_863939.1| ATP binding protein [Magnetococcus sp. MC-1] gi|117607078|gb|ABK42533.1| ATP binding protein [Magnetococcus sp. MC-1] Length = 454 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 27/45 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 +K+ L +S FR + SL + FD T+ V NG GKT IL+AI Sbjct: 1 MKLNTLTLSNFRCFESLEITFDDYLTVLVAQNGGGKTAILDAIGV 45 >gi|159905659|ref|YP_001549321.1| chromosome segregation protein SMC [Methanococcus maripaludis C6] gi|159887152|gb|ABX02089.1| chromosome segregation protein SMC [Methanococcus maripaludis C6] Length = 1189 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 + +++ F+++ + +L T +G NG GK+N ++ I F+ + + R + Sbjct: 4 LSEIHMKNFKSFKNSKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 + + +FA V D + +E+ R ++IN Sbjct: 64 LITYHNGKR-ESFAEVTLFFDNKDRKMPVESNKVGISRKVKING 106 >gi|119872396|ref|YP_930403.1| SMC domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673804|gb|ABL88060.1| SMC domain protein [Pyrobaculum islandicum DSM 4184] Length = 790 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 101/296 (34%), Gaps = 53/296 (17%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRAS 60 +I+ + + FR+Y + TI +G G GKT++L AI + G+ R A Sbjct: 3 RIEKIELENFRSYKGRHEVSLGD-VTILLGRIGAGKTSLLYAIEYALFGKQLEVRERVAK 61 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVD----- 114 D+ + + +E G + I+ S + + + N + +R D Sbjct: 62 LVDLINVDAQEANVA---LELRRGNDKLRIERRLGRRGSEKLVVLYNGIKLRDRDAEERL 118 Query: 115 -ELNK-----HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLM 166 EL + R+ ++ F + ++R +F ID R + E+ + Sbjct: 119 VELIGADEDIYERLVYISHRTLEGFIYGTAQKRTLSVDRLFGIDIIDNILRVVSSIEKYL 178 Query: 167 RGRNRLLT------EGYFDS-----------SWCSSIEAQMAEL----------GVKINI 199 + L E Y D + +IE ++A L ++ Sbjct: 179 LEKAENLRKRLSTYEKYRDIIKKYGGYKGVVTRLETIEGELAALKEREVNLTKTVEELAK 238 Query: 200 ARVEMINAL--SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 R + + + I+ K L T D D + +++ + L + Sbjct: 239 RRAGYLEKIRENENILLEYYKTRSELEILESTTGEDVGLD-AVEKIRDALQEALEE 293 >gi|25028528|ref|NP_738582.1| putative chromosome segregation SMC protein [Corynebacterium efficiens YS-314] gi|23493813|dbj|BAC18782.1| putative chromosome segregation SMC protein [Corynebacterium efficiens YS-314] Length = 1169 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 21/171 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L + F+++AS L F+ VG NG GK+N+++A++++ + R Sbjct: 1 MYLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I + R R +IN R Sbjct: 61 MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALPIDYTEVSVTRRMFRDGASEYEINGARAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 ++D + + + I + I ERR +++ + R Sbjct: 121 LMDIQELLSDSGIGREMHIMVGQGKLAEILESRPEERRAYIEEAAGVLKHR 171 >gi|15964255|ref|NP_384608.1| hypothetical protein SMc02153 [Sinorhizobium meliloti 1021] gi|15073431|emb|CAC41939.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 443 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 26/42 (61%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46 +++ L+++ FR +A + F T+ V +NG GKT +L+A Sbjct: 4 LRLDKLSLTNFRCFAHCEIAFHPGLTVLVAENGSGKTAVLDA 45 >gi|313669116|ref|YP_004049400.1| hypothetical protein NLA_18410 [Neisseria lactamica ST-640] gi|313006578|emb|CBN88043.1| hypothetical protein NLA_18410 [Neisseria lactamica 020-06] Length = 683 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 13/125 (10%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHT----IFVGD-NGVGKTNILEAISFLSP---GRG 55 + I + + F++Y F I +G NG GKT +LEA+ Sbjct: 2 NMWIHSIRLLNFKSYKEAAFSFPEPKNGQNIILIGAMNGHGKTTLLEAVYLCLYDTDAVS 61 Query: 56 F--RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 R + + + + G I +++E R R + + IR Sbjct: 62 HLQRAGLNSKDINYPNFLQAALHHKAAPQYGRYRIELEIEIRQRRQGKIY---GLKIRRK 118 Query: 114 DELNK 118 N+ Sbjct: 119 WHFNE 123 >gi|315613275|ref|ZP_07888184.1| cell division protein Smc [Streptococcus sanguinis ATCC 49296] gi|315314510|gb|EFU62553.1| cell division protein Smc [Streptococcus sanguinis ATCC 49296] Length = 1179 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 106/283 (37%), Gaps = 37/283 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A IK+E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVIVTLDNEDGFIKDAGQVIKVERHIYRSGDSEYRIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR----------VEMINALSSLIM 213 ++ L ++ Q+ L + AR ++ L + I Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLAKQAENARKFLDLDSQRKAIYLDVLVAQIK 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 E + +L+ L + Q L+EE + L R+ Sbjct: 236 ENKAELELTEEELTQVQELLTSYYQKREELEEE-NQTLKKKRQ 277 >gi|159905715|ref|YP_001549377.1| SMC domain-containing protein [Methanococcus maripaludis C6] gi|159887208|gb|ABX02145.1| SMC domain protein [Methanococcus maripaludis C6] Length = 993 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 105/274 (38%), Gaps = 48/274 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASY 61 + IK + + FR++ + + F+ T +G NG GK++I +A++F G FR Sbjct: 1 MIIKNIKMENFRSHRNTSINFNKGITSIIGQNGSGKSSIFQAMNFALFAPRGSNFR---I 57 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--------VIRVV 113 ++ + G+ SF +E +K + +++ L +N + + + Sbjct: 58 ENLMQQGAASF---SVELEFEMMGNTYLVKRKRFQNKTDDKLYVNGKLNAESASEINKKI 114 Query: 114 DELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 +E+ + + + + +R+ + +++ + +E+ Sbjct: 115 EEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLG---------IEKYEKA-S 164 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 + ++ + Y +E ++ + E++ L L E + E L Sbjct: 165 EKMNIVKKSY--EEMLFKLEGELVQE--------PEILENLEKLKNEVSESEILKKEILK 214 Query: 228 LTGFLDG---KFDQSFCALKEEYAK--KLFDGRK 256 G L+ + + ++E++A+ +L + K Sbjct: 215 KYGNLEKLKLEKNSELIQIEEKFAENNQLKENLK 248 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 10/95 (10%) Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 + D + + G GEQ V + + L + ++LDE +A+LDED Sbjct: 890 KDDYSLIVDGLPVETLSG--GEQIAVSLALRLG---ISKAVCNNIECIILDEPTAYLDED 944 Query: 330 KRNALFRI---VTDIGSQIFMTGTDKSVFDSLNET 361 +R L I + I +T + + + Sbjct: 945 RRKNLLNIFKNIKTINQMAIIT--HHQELEQIADN 977 >gi|229192017|ref|ZP_04318987.1| Chromosome partition protein smc [Bacillus cereus ATCC 10876] gi|228591568|gb|EEK49417.1| Chromosome partition protein smc [Bacillus cereus ATCC 10876] Length = 1189 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAEHVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|153828394|ref|ZP_01981061.1| RecF/RecN/SMC N domain protein [Vibrio cholerae 623-39] gi|148876103|gb|EDL74238.1| RecF/RecN/SMC N domain protein [Vibrio cholerae 623-39] Length = 617 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 29/52 (55%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56 + + L + FR Y L + F++ + VG+N GKT I+++I ++ + + Sbjct: 1 MYLHCLKLENFRRYKQLEVEFNSGLNLLVGENDSGKTAIIDSIKYVLNTQSY 52 >gi|284050282|ref|ZP_06380492.1| ATPase [Arthrospira platensis str. Paraca] gi|291566863|dbj|BAI89135.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 369 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 69/395 (17%), Positives = 132/395 (33%), Gaps = 50/395 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHT-------IFVGDNGVGKTNILEAISF---LSPGR 54 +K++ + I F+ + L + F + +GDNG GKT +L+AI+ L+ GR Sbjct: 1 MKVESIKIENFKRFQDLEISFKNNILDEVSDRYLILGDNGTGKTTLLQAIALPLALATGR 60 Query: 55 GFRRASYADVTRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRV 112 R + + F + ++E + +K + + Q ++ +R Sbjct: 61 -IRDVADFNWIGFLPGRHFRWGSPKIEMQILFEEEELKTTSELAKKWYDAQPDEFKEMRE 119 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERL----- 165 E R+S L+ ER +F R I+ R + F +L Sbjct: 120 FVEPGDSRRVSLLLNGDFWKAGDTPAERAQFRGRYYAQWLINRREQSVRHYFAKLPGVFW 179 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 L + DSS ++ +E + + L ++++ + + Sbjct: 180 FDQFRNLGSHSKPDSSR-DNLNESSSEASFDVG------VGILRQYLIDWHRNQESGIGD 232 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG-PHRSDLIVDYCDK--AI 282 S + L E KK+F R + + P S+ D Sbjct: 233 YSNSYLLQI----------ERLYKKVFPDRSFAGIEKMPSQNDPTGSETYFLLNDGYRTY 282 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 + S GEQ V + + ++L+DEI +L + I Sbjct: 283 DVQEMSAGEQSVFPL-----LYEFVRQQI-AYSVVLIDEIDLNLHPPAAQYFVSQLMKIE 336 Query: 343 --SQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 Q +T T ++ ++ R+ LC+ Sbjct: 337 PTCQFIIT-THSDSVSNVVGESETYRLPGG-TLCL 369 >gi|117938807|gb|AAH03396.1| SMC2 protein [Homo sapiens] Length = 289 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|49481959|gb|AAT66691.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A84] Length = 573 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 92/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELXIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ + A++ I + +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ ++ E+ L + LD A + + + Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 L+ + S E QMA R++++ +E E + Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQATLELGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + A+++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248 >gi|257893223|ref|ZP_05672876.1| chromosome partition protein SMC [Enterococcus faecium 1,231,408] gi|257896408|ref|ZP_05676061.1| chromosome partition protein SMC [Enterococcus faecium Com12] gi|257829602|gb|EEV56209.1| chromosome partition protein SMC [Enterococcus faecium 1,231,408] gi|257832973|gb|EEV59394.1| chromosome partition protein SMC [Enterococcus faecium Com12] Length = 1193 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLQLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|328950730|ref|YP_004368065.1| SMC domain protein [Marinithermus hydrothermalis DSM 14884] gi|328451054|gb|AEB11955.1| SMC domain protein [Marinithermus hydrothermalis DSM 14884] Length = 1081 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 84/275 (30%), Gaps = 35/275 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY 61 ++I+ L + F+++A L F + +G NG GK+N++EA+ F+ + R R Sbjct: 1 MRIERLILHGFKSFAERTVLEFPHGLSGIIGPNGSGKSNVIEALRFVVGARARELRGGRA 60 Query: 62 ADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR----- 111 ++ G F + +S ++E + VR + Sbjct: 61 EELIFHGGTGRPPMPFAEVILELTRGRERITVSRRIERDGSQEVRLNGRRASFRQIEQAL 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 L ++ + I ++ ++ + R Sbjct: 121 AGSGLGRNGYAIVGQGEVSGILHASPEV-------LLGHLED--AAGLRTVTLAHREAQA 171 Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 L EA +AEL ++ R + L+ + + +L + Sbjct: 172 RLERA----------EAHLAELSSEL-ARRQTDLERLAEEARAAQRAQALAAERLCVQRG 220 Query: 232 LDGKFDQSFCALKEEYAKKLFDGR--KMDSMSRRT 264 L + + + + + R+T Sbjct: 221 LIQARVAELEREIQALRAAIQAAQDTQAELRERQT 255 >gi|293556819|ref|ZP_06675380.1| chromosome segregation protein SMC [Enterococcus faecium E1039] gi|291600903|gb|EFF31194.1| chromosome segregation protein SMC [Enterococcus faecium E1039] Length = 1193 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYTEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHVLEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|218459961|ref|ZP_03500052.1| hypothetical protein RetlK5_10859 [Rhizobium etli Kim 5] Length = 158 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 + I + + +RN+ F+ +G+NG GKTN+ A+ + Sbjct: 1 MHISGVQLVNYRNFERANFHFNKGINTIIGENGSGKTNLFRAMRLM 46 >gi|116283354|gb|AAH17845.1| SMC2 protein [Homo sapiens] Length = 289 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDEKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|79154018|gb|AAI07892.1| SMC2 protein [Homo sapiens] Length = 291 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|260555697|ref|ZP_05827917.1| chromosome segregation protein SMC [Acinetobacter baumannii ATCC 19606] gi|260410608|gb|EEX03906.1| chromosome segregation protein SMC [Acinetobacter baumannii ATCC 19606] Length = 1149 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 103/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELHFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P RIF + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E Q+ AE Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLENQIRTLKIEILSFQAE 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296 >gi|293379493|ref|ZP_06625637.1| chromosome segregation protein SMC [Enterococcus faecium PC4.1] gi|292642016|gb|EFF60182.1| chromosome segregation protein SMC [Enterococcus faecium PC4.1] Length = 1193 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLQLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|109110705|ref|XP_001110075.1| PREDICTED: structural maintenance of chromosomes protein 2-like isoform 1 [Macaca mulatta] gi|109110707|ref|XP_001110214.1| PREDICTED: structural maintenance of chromosomes protein 2-like isoform 4 [Macaca mulatta] gi|109110711|ref|XP_001110295.1| PREDICTED: structural maintenance of chromosomes protein 2-like isoform 6 [Macaca mulatta] gi|297270473|ref|XP_002800070.1| PREDICTED: structural maintenance of chromosomes protein 2-like [Macaca mulatta] Length = 1197 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKARSAEELKEMQDKIIKLQEE 266 >gi|315428019|dbj|BAJ49607.1| conserved hypothetical protein [Candidatus Caldiarchaeum subterraneum] Length = 539 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 8/135 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVT 65 IK + + F ++ R+ + VG NG GK++IL AIS L R AD+ Sbjct: 13 IKEVILENFMSHEYSRIPLRRGLNVIVGPNGAGKSSILLAISVALGQTYTERGQRLADLI 72 Query: 66 RIGSPSFFSTFAR----VEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNK 118 R G+ S V+G+ + I ++ + ++ + + E+ Sbjct: 73 RRGNESARVAVVFDNRPVDGVRPIPSINSDTVTITRFLKKTGEYWHYVNNRFKTKAEVGN 132 Query: 119 HLRISWLVPSMDRIF 133 L + P I Sbjct: 133 LLSRIGINPDNVLII 147 >gi|296190449|ref|XP_002743201.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform 1 [Callithrix jacchus] gi|296190451|ref|XP_002743202.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform 2 [Callithrix jacchus] gi|296190453|ref|XP_002743203.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform 3 [Callithrix jacchus] Length = 1197 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIVLEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKARSAEELKEMQDKVIKLQEE 266 >gi|218777924|ref|YP_002429242.1| SMC domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759308|gb|ACL01774.1| SMC domain protein [Desulfatibacillum alkenivorans AK-01] Length = 671 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 67/401 (16%), Positives = 122/401 (30%), Gaps = 81/401 (20%) Query: 5 IKIKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRA 59 + + + I FR + + T VG+N GK+ I++AI L Sbjct: 1 MYLSKITIENFRCFGERDKKFEMSLKPGLTTLVGENDAGKSAIIDAIRYVLCT------- 53 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIK---LETRDDRSVRCLQINDVVIRVVDEL 116 + + RI F V I K LE R+ +D Sbjct: 54 TDQEWLRIKENDF-----HVGANPKEIRIVCKFDDLEAHHQRAFIEYLTHDASGAKPPVF 108 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF---AIDPR--------HRRRMIDFERL 165 H W I G R +IDP+ + R + D ER Sbjct: 109 FLH----WTAKETGEIMKGRPYRRIELHSGEKGEGPSIDPKVRELLSVTYLRPLRDAERA 164 Query: 166 MRG-RNRLLTEGYFDSSWCS---------SIEAQMAELGVKINIARVEMINALSSLIMEY 215 + R L++ + + +++ G I +I I+E Sbjct: 165 LSAGRGSRLSQVLYHTEEVKSSGKPYGEGVANEELSVTG--IGELADALIKN-QPGIVET 221 Query: 216 VQKENFPHIKLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 ++ + KL+L G A + ++L + DL Sbjct: 222 RKQIDNHLEKLTLLGNPICSKVEVSGAAASPDVRLRQLLEKL----------------DL 265 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLA-HARLISNTTGFAPILLLDEISAHLDEDKRN 332 +D K GS +F+A L++ +LL++E AHL ++ Sbjct: 266 SLDEIGKP---GLGSN-------NLLFMACELLLLAQENEGNRMLLIEEPEAHLHPQRQL 315 Query: 333 ALFRIVT----DIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 + + + + QI +T ++ ++ + N Sbjct: 316 QVMKTLQEEAEEKKIQIIVTTHSPNLASAIKLKGLTLIHEN 356 >gi|256851299|ref|ZP_05556688.1| chromosome segregation protein SMC [Lactobacillus jensenii 27-2-CHN] gi|260660723|ref|ZP_05861638.1| chromosome segregation protein SMC [Lactobacillus jensenii 115-3-CHN] gi|282933256|ref|ZP_06338643.1| chromosome segregation protein SMC [Lactobacillus jensenii 208-1] gi|256616361|gb|EEU21549.1| chromosome segregation protein SMC [Lactobacillus jensenii 27-2-CHN] gi|260548445|gb|EEX24420.1| chromosome segregation protein SMC [Lactobacillus jensenii 115-3-CHN] gi|281302760|gb|EFA94975.1| chromosome segregation protein SMC [Lactobacillus jensenii 208-1] Length = 1189 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L ++ F+++A ++ F T VG NG GK+NI EAI ++ S + R ++ Sbjct: 1 MPLTELTLTGFKSFAEKTKIKFGDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGSN 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLET-RDDRSVRCLQ-------INDVVIR 111 DV GS A VE + + ++ + R + R L+ IN+ +R Sbjct: 61 MKDVIFAGSQYRTPMNHAEVELVFENKNRALNFDADRVTVARRILRSGDSEYLINNQTVR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLD 145 + D + S+ D I + RR + Sbjct: 121 LKDVHALFMDSGISQDSLAIISQGKVDEILNSRPENRRAIFE 162 >gi|297206168|ref|ZP_06923563.1| chromosome segregation protein Smc [Lactobacillus jensenii JV-V16] gi|297149294|gb|EFH29592.1| chromosome segregation protein Smc [Lactobacillus jensenii JV-V16] Length = 1189 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L ++ F+++A ++ F T VG NG GK+NI EAI ++ S + R ++ Sbjct: 1 MPLTELTLTGFKSFAEKTKIKFGDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGSN 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLET-RDDRSVRCLQ-------INDVVIR 111 DV GS A VE + + ++ + R + R L+ IN+ +R Sbjct: 61 MKDVIFAGSQYRTPMNHAEVELVFENKNRALNFDADRVTVARRILRSGDSEYLINNQTVR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLD 145 + D + S+ D I + RR + Sbjct: 121 LKDVHALFMDSGISQDSLAIISQGKVDEILNSRPENRRAIFE 162 >gi|71064894|ref|YP_263621.1| condensin subunit Smc [Psychrobacter arcticus 273-4] gi|71037879|gb|AAZ18187.1| condensin subunit Smc [Psychrobacter arcticus 273-4] Length = 1307 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 31/248 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L ++ F+++A+ F T VG NG GK+N+++AI ++ + + R + Sbjct: 1 MRLKSLKLAGFKSFANPTTFTFRHGITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60 Query: 61 YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105 +DV G + A VE + I + + SVR I Sbjct: 61 MSDVIFAGTQDKAAKSVASVELTFEHTQDEKTGIRHEFNLYQELSVRRQVNLDGRSDYFI 120 Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157 N R D L + RI M+ R F++ R++ Sbjct: 121 NGTRCRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEAAG--VSRYQA 178 Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217 R + ++ ++ L + S S + ++++ + R E + + I + + Sbjct: 179 RREETQKKLKRTQDNLARLHDMQSELVSQQKRLSKQAA--SAERYEELALTLADIKQQLA 236 Query: 218 KENFPHIK 225 + K Sbjct: 237 IQQLYQAK 244 >gi|329569637|gb|EGG51403.1| RecF/RecN/SMC protein [Enterococcus faecalis TX1467] Length = 485 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 63/379 (16%), Positives = 123/379 (32%), Gaps = 42/379 (11%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I + +S F+++ + FVG+N GKT I +AI F+ G+ + D Sbjct: 1 MYISKIKLSNFKSFRGKHTIDLSKGVNFFVGNNNCGKTTIFKAIEFIQSGK-----NKFD 55 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 G F + VE DI LE + + I++ H Sbjct: 56 FITKG---FETENVSVEVEFKGDDILSLLENKGLKKYENYVIDNGD-------GTHSIRI 105 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 I G + + I + + E L N+ D + Sbjct: 106 LRSSEEKEIIQGTKK-----ISLDISKI-RVYNPCSSESEEL----NKFENPTGIDKTIS 155 Query: 184 SSIEAQMAELGVKINIAR----VEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFD 237 + +AQ +K +++ + + + QK + F + Sbjct: 156 ALFDAQFIYSDLKNEEYHDFGFTKILGKIITDSTKGFQKGEIWKDFARAHNKTFGNEGLG 215 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS------DLIVDYCDKAITIAHGSTGE 291 ++ E + L + D + P +L++ TI+ TG Sbjct: 216 NILAEVEVEISNVLKEQYG-DGEVKFNFGLPEIDSFYKTGNLLMADNGNYTTISEKGTGM 274 Query: 292 QKVVLVGIFLAHARLISNTTGFAPI-LLLDEISAHLDEDKRNALFRIVTDI--GSQIFMT 348 Q+ + + + ++ + N G PI +DE L ++ L + + SQ+F+T Sbjct: 275 QRALALSLIQVYSGIAKNEIGSKPIMFFIDEPETFLHPKAQDKLIDSLNRLADKSQVFIT 334 Query: 349 GTDKSVFDSLNETAKFMRI 367 + N + + I Sbjct: 335 THSPYLLRKFNSDTQQINI 353 >gi|303390903|ref|XP_003073682.1| chromosome segregation protein [Encephalitozoon intestinalis ATCC 50506] gi|303302829|gb|ADM12322.1| chromosome segregation protein [Encephalitozoon intestinalis ATCC 50506] Length = 1014 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 6/127 (4%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + IK + + F+++ L F I VG NG GK++I+ AI F+ G + S + Sbjct: 1 MHIKQIRLKNFKSFKDETLVEFTENVNIIVGRNGSGKSSIVSAIRFVLCGEKYNCESRME 60 Query: 64 VTRIG----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 + G G ++ D +++ I DEL Sbjct: 61 LIHEGSRASEEEASVEIVFDSGSPESLGKGFSIKRVVDAKKDEYMLDNKTISR-DELGGL 119 Query: 120 LRISWLV 126 L+ Sbjct: 120 LQGHGFA 126 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 29/166 (17%) Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE---EYAKKLFDG 254 R+E + I E++ L +G ++ ++E E+ +L +G Sbjct: 835 IRKRLEELKDDKRHISEFIA---------ELDSRKEGAMGKAMSVVEEGFSEFYSRLTEG 885 Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314 K + S + IG K + + S G++ VV + + + + Sbjct: 886 GKAELYSYESSIGIK--------VGKDVGTSLLSGGQKAVVALSLIFS-----MQRVNPS 932 Query: 315 PILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFD 356 P+ + DEI A+LD R + ++ ++ GSQ +T K + + Sbjct: 933 PLYVFDEIDANLDAQSRQKVSMLIKEMSERNGSQFIITTFRKELLN 978 >gi|322375350|ref|ZP_08049863.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C300] gi|321279613|gb|EFX56653.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C300] Length = 1179 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 106/283 (37%), Gaps = 37/283 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A IK+E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVIVTLDNEDGFIKDAGQVIKVERHIYRSGDSEYRIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----------EMINALSSLIM 213 ++ L ++ Q+ L + AR ++ L + I Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLAKQAENARKFLDLDGQRKTIYLDVLVAQIK 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 E + +L+ L + Q L+EE + L R+ Sbjct: 236 ENKTELELTEEELTQVQELLTSYYQKREELEEE-NQSLKKKRQ 277 >gi|313901968|ref|ZP_07835384.1| chromosome segregation protein SMC [Thermaerobacter subterraneus DSM 13965] gi|313467757|gb|EFR63255.1| chromosome segregation protein SMC [Thermaerobacter subterraneus DSM 13965] Length = 1242 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 36/232 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A RL F T VG NG GK+N+++A+ ++ R R + Sbjct: 1 MYLKRLELYGFKSFADRTRLEFGPGITAIVGPNGSGKSNLVDAVRWVLGEQSARQLRGSR 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G I T R R +N +R Sbjct: 61 MEDVIFAGTATRKGVGLAEVVLVLDNEDGRLPIDYTEVTVARRVDRAGGSDYLLNGQRVR 120 Query: 112 VVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161 + D + + +D I S +RR L+ + R + + Sbjct: 121 LRDVQELLYDTAIGREAYSVVGQGKIDEILSARDEDRRGLLEEAAGITRFKVRKKEALRR 180 Query: 162 FE-------------RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 E R + R LTE + ++ +L ++ A Sbjct: 181 LEDAEHRLLRLGDILRELEDRLDGLTEQARRAHLYRQWRDELVDLEARMVTA 232 >gi|294500964|ref|YP_003564664.1| chromosome segregation protein SMC [Bacillus megaterium QM B1551] gi|294350901|gb|ADE71230.1| chromosome segregation protein SMC [Bacillus megaterium QM B1551] Length = 1186 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 110/283 (38%), Gaps = 43/283 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L+I+ F+++A + + F T VG NG GK+NI +AI ++ + R Sbjct: 1 MFLKRLDIAGFKSFAEKVSIDFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFSTFA-----RVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS S + +E + + + + R RS IN+ R Sbjct: 61 MEDIIFAGSESRRAVNVADVTLTLENDDQFLPLDYHEVSITRRVYRSGDSEFFINNQPCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162 + ++ S L I S S ERR+ + ++ + Sbjct: 121 -LKDIVDLFMDSGLGREAFSIISQGKVEEVLSSKSDERRKIFEEAAG---------VLKY 170 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENF 221 + R R L + ++ + E+ ++ E + SS+ +Y+Q KE Sbjct: 171 KT--RKRKAELRLLETQENLNRVVDI-LHEIEGQL-----EPLQIQSSIAKDYLQKKEEL 222 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYA--KKLFDGRKMDSMSR 262 HI +++T F Q + LK E A ++L + + +R Sbjct: 223 EHIDVAVTVFEVEDLHQKWEKLKAEMAQHEQLEESLATNIRTR 265 >gi|257887974|ref|ZP_05667627.1| chromosome partition protein SMC [Enterococcus faecium 1,141,733] gi|257824028|gb|EEV50960.1| chromosome partition protein SMC [Enterococcus faecium 1,141,733] Length = 1193 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLQLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWGNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|332222395|ref|XP_003260355.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform 1 [Nomascus leucogenys] gi|332222397|ref|XP_003260356.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform 2 [Nomascus leucogenys] gi|332222399|ref|XP_003260357.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform 3 [Nomascus leucogenys] Length = 1197 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 98/291 (33%), Gaps = 36/291 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN------ALSSLIMEYVQ 217 ++ + E + +E ++ K+ R + + L Y+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIA 236 Query: 218 KENFPHIKLSLTGFLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRR 263 + + + K Q L E K R+++ + +R Sbjct: 237 YQFLLAEDTKVRSAEELKEMQDKVIKLQEELSENDKKIKALNREIEELEKR 287 >gi|295397857|ref|ZP_06807920.1| SMC family domain protein [Aerococcus viridans ATCC 11563] gi|294973902|gb|EFG49666.1| SMC family domain protein [Aerococcus viridans ATCC 11563] Length = 1191 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 101/283 (35%), Gaps = 39/283 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A + FD T VG NG GK+NI EAI L + R + Sbjct: 1 MYLKTVEMVGFKSFADKTTIEFDNGFTAIVGPNGSGKSNITEAIKWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSPSFFS-TFARVEGMEGLADISIKLETRDDRSVRC--------LQINDVVIR 111 +DV G+ +A+V +D ++ ET + R IN R Sbjct: 61 MSDVIFAGAEDRRKGQYAQVTLTFDNSDRALNFETDEVAVSRRYTAAGDSEYMINRRPCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162 + ++ + + + + I S +RR + + ++ R + Sbjct: 121 -LRDITELMMDTGIGRDSFSIISQGKVEQIFTQKPEDRRGIFEEAAGVMK--YKSRKHEA 177 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 ER ++ + + + ++EL +I + ++ + K Sbjct: 178 ERKLKH---------TEENLHRIYDI-LSELADRI----EPLEEQKNAALRYKASKAELS 223 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 I+++LT ++ + K + D + +T Sbjct: 224 DIEIALTAVQIETLNEQWQVAKNDILAYGEDIHNRRAALTKTQ 266 >gi|289435147|ref|YP_003465019.1| chromosome segregation protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171391|emb|CBH27935.1| chromosome segregation protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1186 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 21/174 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS S FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDSRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRR 157 + ++ S L I S ERR + + +HR+ Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAGVLKYKHRK 174 >gi|254413646|ref|ZP_05027416.1| hypothetical protein MC7420_6225 [Microcoleus chthonoplastes PCC 7420] gi|196179753|gb|EDX74747.1| hypothetical protein MC7420_6225 [Microcoleus chthonoplastes PCC 7420] Length = 381 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 70/378 (18%), Positives = 119/378 (31%), Gaps = 61/378 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I+ FR + L + + VG N GKT+ILEAI L +G +T Sbjct: 2 LKNLTINNFRCFKHFELQQLGRVNLLVGKNNSGKTSILEAIQLLCS-KGNPEPLLDAMTN 60 Query: 67 IGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 G + + R E + + E L ND + L + Sbjct: 61 RGEYCWSDDISRGRRERELDICHLFHGHEIELGSEFLILASNDNIENK---LFGSIGKQS 117 Query: 125 LVPSMDRIFS--GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + D + F D ++ + N T+G SW Sbjct: 118 IASKADSEIESDESTSVVEEFPDNLI---ELGF--------------NISWTDGNKPESW 160 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---------ENFPHIKLSLTGFLD 233 + + I R + ++ I +Y+ E F + L+ L Sbjct: 161 KHILSSNGGLSEDYIRRWRFRGKPSKNAAINQYITSSSLTTKNMIELFNQVVLTADEMLV 220 Query: 234 GKFDQSFCALKEEYAKKLFD---GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 K Q+ E A ++ R ++S +V D + GS G Sbjct: 221 YKALQTIEPKIERIASITYEYESHRYLESRGG----------FVVRLADSDQRVPIGSMG 270 Query: 291 EQ--KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD----EDKRNALFRIVTDIGSQ 344 + +++ + + S +LL+DEI L ED + + Q Sbjct: 271 DGIWRMLGLAL--------STVCAKGGVLLVDEIDTGLHFTAMEDMWKLILETAKKLNVQ 322 Query: 345 IFMTGTDKSVFDSLNETA 362 +F T + + SL A Sbjct: 323 VFATTHNSDCWTSLASIA 340 >gi|149183217|ref|ZP_01861663.1| Smc [Bacillus sp. SG-1] gi|148849082|gb|EDL63286.1| Smc [Bacillus sp. SG-1] Length = 1189 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 29/225 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L++ F+++ + + F T VG NG GK+NI++AI L + R A Sbjct: 1 MFLKQLDVIGFKSFAERISVDFVPGVTAVVGPNGSGKSNIIDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS S F ++ +G I + R R +N R Sbjct: 61 MEDVIFAGSDSRKPLNFAEVTLTLDNNDGALPIEYSEVSVTRRVFRSGDSEYLLNKQPCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162 + ++ + S L I S ERR + + ++ R Sbjct: 121 -LKDIIELFMDSGLGKEAFSIISQGKVEEILNSKPEERRTIFEDAAGVLK--YKNRKKKA 177 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207 E + L S +E Q+ L ++ ++AR + + Sbjct: 178 EAKLHETQENLNRVN---DIISELEGQVEPLKIQASMAR-DYLEK 218 >gi|237728394|ref|ZP_04558875.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226909872|gb|EEH95790.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 575 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 113/369 (30%), Gaps = 59/369 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVT 65 I+ ++I FR +G GK+ I++AI L R F S AD Sbjct: 4 IRHISIQNFRAVRQAEWCPGPSLNCLIGPGDSGKSTIIDAIDLVLGARRSF-TFSDADFH 62 Query: 66 RIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + + + + + +GL ++ ++ +I+D + DE LR+ Sbjct: 63 LMNTATPICISITLGQLDDGLLNLEAYGRYFRGFNIETKEIHDEPL-AGDETVLTLRMVV 121 Query: 125 ---LVPS----MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 L P +R + +R ++ R + P R+ L Sbjct: 122 EDDLEPDWLLFSERTTAEGLEKRLQWKHRE--QLSPTRLGAASHHHLAWGNRSVLNKLSD 179 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 D + +++ LS + P + LT Sbjct: 180 EDFNVSATL-------------------AELSRQTRQSFAARELPQLDAILTEVRTIANS 220 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD-YCDKAITIAHGSTGEQKVVL 296 + K L D + G S+ + + + + TG ++++ Sbjct: 221 LGVPVGE---LKALLD-----------VNGVSLSNSAISLHNNDNTPLRMLGTGSTRLLV 266 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG----SQIFMTGTDK 352 G+ G +L+DE L+ + + L + SQ+F+T Sbjct: 267 SGL--------QKAVGRPGTILIDEAEYGLEPYRISQLLHQLGSRDPEPTSQVFITTHSP 318 Query: 353 SVFDSLNET 361 V L T Sbjct: 319 YVLRELQAT 327 >gi|209527433|ref|ZP_03275938.1| AAA ATPase [Arthrospira maxima CS-328] gi|209492106|gb|EDZ92456.1| AAA ATPase [Arthrospira maxima CS-328] Length = 378 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 69/396 (17%), Positives = 132/396 (33%), Gaps = 48/396 (12%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHT-------IFVGDNGVGKTNILEAISF---LSP 52 N +K++ + I F+ + L + F + +GDNG GKT +L+AI+ L+ Sbjct: 8 NYMKVESIKIENFKRFQDLEISFKNNILDEVSDRYLILGDNGTGKTTLLQAIALPLALAT 67 Query: 53 GRGFRRASYADVTRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQIND-VVI 110 GR R + + F + ++E + +K + + Q ++ + Sbjct: 68 GR-IRDVADFNWIGFLPGRHFRWGSPKIEMQILFEEEELKTTSELAKKWYDAQPDEFKEM 126 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERL--- 165 R E R+S L+ ER +F R I+ R + F +L Sbjct: 127 REFVEPGDSRRVSLLLNGDFWKAGDTPAERAQFRGRYYAQWFINRREQSVRHYFAKLPGV 186 Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 L + DSS ++ ++ + + L ++++ + + Sbjct: 187 FWFDQFRNLGSHSKPDSSR-DNLNESSSQASFDVG------VGILRQYLIDWHRNQESGI 239 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 S + L ++ Y K D T P S+ D T Sbjct: 240 GDYSNSYLL---------QIERLYQKVFPDRSFAGIEKLPTQNDPTGSETYFLLNDGYRT 290 Query: 284 --IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + S GEQ V + + ++L+DEI +L + I Sbjct: 291 YDVQEMSAGEQSVFPL-----LYEFVRQQI-AYSVVLIDEIDLNLHPPAAQYFVSQLMKI 344 Query: 342 G--SQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 Q +T T ++ ++ R+ LC+ Sbjct: 345 EPTCQFIIT-THSDSVSNVVGESETYRLPGG-TLCL 378 >gi|297685015|ref|XP_002820101.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 2-like [Pongo abelii] Length = 1198 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|269214498|ref|ZP_06158610.1| putative DNA sulfur modification protein DndD [Neisseria lactamica ATCC 23970] gi|269209648|gb|EEZ76103.1| putative DNA sulfur modification protein DndD [Neisseria lactamica ATCC 23970] Length = 507 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 13/124 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHT----IFVGD-NGVGKTNILEAISFLSP---GRGF 56 + I + + F++Y F I +G NG GKT +LEA+ Sbjct: 1 MWIHSIRLLNFKSYKEAAFSFPEPKNGQNIILIGAMNGHGKTTLLEAVYLCLYDTDAVSH 60 Query: 57 --RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 R + + + + G I +++E R R + + IR Sbjct: 61 LQRAGLNSKDINYPNFLQAALHHKAAPQYGRYRIELEIEIRQRRQGKIY---GLKIRRKW 117 Query: 115 ELNK 118 N+ Sbjct: 118 HFNE 121 >gi|27377041|ref|NP_768570.1| hypothetical protein bll1930 [Bradyrhizobium japonicum USDA 110] gi|27350183|dbj|BAC47195.1| bll1930 [Bradyrhizobium japonicum USDA 110] Length = 836 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 36/223 (16%) Query: 144 LDRMVFAIDPRHRRRMIDFERLMR---GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 +D D + + +RL+ R+ L ++ AQ + +I Sbjct: 455 VDIESKQGDHTYIKAKTKIDRLLELQSERDLALRTRTQLGKLSDALTAQATIISAEIRKK 514 Query: 201 RVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 +++ L + + + ++ + L + +Q L ++AK Sbjct: 515 VQTLLDKLQTPMNDIYKRIQGAGAAPIRLELPAEDDTNQQRLNLLIDFAKN--------- 565 Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 RT + P + S + V + + +A I API+ L Sbjct: 566 ---RTGVQPG---------------GYLSDSQIHSVALALRMA---AIKQFNAGAPIIAL 604 Query: 320 DEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNE 360 D+I D D R + ++ + QI +T D+ F+ L + Sbjct: 605 DDIVTSYDADHRRTIAGLIATMFGDCQILITTHDERFFNYLKD 647 Score = 38.0 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 74/210 (35%), Gaps = 30/210 (14%) Query: 7 IKFLNISEFRNY-ASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ L +S FR Y F + + NG GK+++++A+ F+ + + Sbjct: 17 LQSLGLSGFRAYLQPKTFDFSKKRCLAIFAPNGSGKSSVIDALEFMF-------SKDGTL 69 Query: 65 TRIGS-----PSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNK 118 R+G + A E ++ + + + + R + + Sbjct: 70 ERLGQRTINNQAGPVAMAHNLSEEAKIAPAVTIGVVSGKDATNGSRPATGTKRPIPAVAT 129 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR--------MIDFERLMRGRN 170 L + VP I G ++ R F++ + + R+ +++ ++ +R Sbjct: 130 TLNACFAVPP---IIRGHAL--RTFVE--IHTPEQRYTDVANWLQLGPLVEVQKNIRALR 182 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 + D + + Q+A ++ A Sbjct: 183 TQVKAASEDGTALQRADTQLARKTAQVVKA 212 >gi|12620631|gb|AAG60907.1|AF322013_26 ID485 [Bradyrhizobium japonicum] Length = 826 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 36/223 (16%) Query: 144 LDRMVFAIDPRHRRRMIDFERLMR---GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 +D D + + +RL+ R+ L ++ AQ + +I Sbjct: 445 VDIESKQGDHTYIKAKTKIDRLLELQSERDLALRTRTQLGKLSDALTAQATIISAEIRKK 504 Query: 201 RVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 +++ L + + + ++ + L + +Q L ++AK Sbjct: 505 VQTLLDKLQTPMNDIYKRIQGAGAAPIRLELPAEDDTNQQRLNLLIDFAKN--------- 555 Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 RT + P + S + V + + +A I API+ L Sbjct: 556 ---RTGVQPG---------------GYLSDSQIHSVALALRMA---AIKQFNAGAPIIAL 594 Query: 320 DEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNE 360 D+I D D R + ++ + QI +T D+ F+ L + Sbjct: 595 DDIVTSYDADHRRTIAGLIATMFGDCQILITTHDERFFNYLKD 637 Score = 38.0 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 74/210 (35%), Gaps = 30/210 (14%) Query: 7 IKFLNISEFRNY-ASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ L +S FR Y F + + NG GK+++++A+ F+ + + Sbjct: 7 LQSLGLSGFRAYLQPKTFDFSKKRCLAIFAPNGSGKSSVIDALEFMF-------SKDGTL 59 Query: 65 TRIGS-----PSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNK 118 R+G + A E ++ + + + + R + + Sbjct: 60 ERLGQRTINNQAGPVAMAHNLSEEAKIAPAVTIGVVSGKDATNGSRPATGTKRPIPAVAT 119 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR--------MIDFERLMRGRN 170 L + VP I G ++ R F++ + + R+ +++ ++ +R Sbjct: 120 TLNACFAVPP---IIRGHAL--RTFVE--IHTPEQRYTDVANWLQLGPLVEVQKNIRALR 172 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 + D + + Q+A ++ A Sbjct: 173 TQVKAASEDGTALQRADTQLARKTAQVVKA 202 >gi|226940717|ref|YP_002795791.1| RecF [Laribacter hongkongensis HLHK9] gi|226715644|gb|ACO74782.1| RecF [Laribacter hongkongensis HLHK9] Length = 610 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+ + + F+ S RL T+ G NG GK+++LEA+ G R A D Sbjct: 1 MKLTRIEVQNFQGLRSARLALTTPVTLIAGRNGAGKSSLLEAVRMAMSGDPVRVARKKDC 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 ++ + + RVE +G + D + R QI + + L L Sbjct: 61 VQLVTDGHKAGMVRVEFADGRFAT---VALPDGKVNRHGQIVEDPDKARAALPYVLDAPL 117 Query: 125 LV 126 Sbjct: 118 FS 119 >gi|85712484|ref|ZP_01043533.1| Chromosome segregation ATPase, sms [Idiomarina baltica OS145] gi|85693762|gb|EAQ31711.1| Chromosome segregation ATPase, sms [Idiomarina baltica OS145] Length = 581 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 104/292 (35%), Gaps = 41/292 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F Q T VG NG GK+N+++A+ ++ S + R + Sbjct: 1 MRLKHIKLAGFKSFVDATKVPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107 DV GS + F +T R++G +IS+K + D N Sbjct: 61 MTDVIFNGSQARKPVSQASVELVFDNTSGRIQGEFASYNEISVKRQVTRDGQSNYFLNNS 120 Query: 108 VVIRV-----------------VDELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144 R + E R+ P RIF + ERR+ Sbjct: 121 KCRRRDITDLFLGTGLGPRSYAIIEQGMISRLIESKPQELRIFIEEAAGISKYKERRKET 180 Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204 + + + R+ D + + + L + ++AQ +L + +R Sbjct: 181 ENRMLH-TRENLERISDVREELGQQLQKLQRQAAAAHRYKELKAQERDLRALLLSSRWWQ 239 Query: 205 INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 +N + + E + D K S EE +++ ++ Sbjct: 240 LNEKQNQLREQRSHYRLELDRWQTEQTGDEKGVISLREHAEELKQRVEQAQQ 291 >gi|294618514|ref|ZP_06698076.1| chromosome segregation protein SMC [Enterococcus faecium E1679] gi|291595214|gb|EFF26545.1| chromosome segregation protein SMC [Enterococcus faecium E1679] Length = 1193 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|293567879|ref|ZP_06679220.1| chromosome segregation protein SMC [Enterococcus faecium E1071] gi|291589464|gb|EFF21271.1| chromosome segregation protein SMC [Enterococcus faecium E1071] Length = 1193 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|229180124|ref|ZP_04307468.1| Chromosome partition protein smc [Bacillus cereus 172560W] gi|228603333|gb|EEK60810.1| Chromosome partition protein smc [Bacillus cereus 172560W] Length = 1189 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKNEEAKMSTDLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|255539813|ref|XP_002510971.1| structural maintenance of chromosomes 6 smc6, putative [Ricinus communis] gi|223550086|gb|EEF51573.1| structural maintenance of chromosomes 6 smc6, putative [Ricinus communis] Length = 1058 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 80/240 (33%), Gaps = 26/240 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 + + + F +++L++ G NG GK+ IL A+ R R ++ D Sbjct: 22 VTRIRLENFMCHSNLQIELCPWVNFITGQNGSGKSAILTALCIAFGSRAKGTQRASTLKD 81 Query: 64 VTRIGSPSFFS-TFARVEGMEGLAD------ISIKLETRDDRSVRCLQ-INDVVIRV--- 112 + G + EG E I I+ S L+ + Sbjct: 82 FIKTGCSYAVVEVEVKNEGDEAFKPEIYGDAIIIERRINQSTSSTVLKDFQGKKVASRKE 141 Query: 113 -VDELNKHL------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 + EL +H + R F +R +F + + + Sbjct: 142 ELRELIEHFNIDVENPCVIMSQDKSREFLHSGNDRDKFKFFFKATLLQQVNDLLQSIYEQ 201 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 ++ N + E + IE ++AEL VKI +E I +S + + +K + + Sbjct: 202 LKSTNAFVDEL---EATIKPIEKELAELQVKI--KNMEHIEEISQQVQQLKKKLAWSWVY 256 >gi|291519530|emb|CBK74751.1| RecF/RecN/SMC N terminal domain [Butyrivibrio fibrisolvens 16/4] Length = 221 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 21/166 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A ++ F T VG NG GK+N+ +A+ L + R AS Sbjct: 1 MYLKSIELYGFKSFAHKMKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ ++ + + + + T R R +N R Sbjct: 61 MQDVIFAGTEARKPLSYAYVALTMDNSDHVLPVDYEEVTIARRVYRSGESEYLLNGTPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149 + D + K +++I SG +RR D V Sbjct: 121 LKDVAELFYDTGVGKEGYSIIGQGQIEKILSGKPEDRRELFDEAVG 166 >gi|257878771|ref|ZP_05658424.1| chromosome partition protein SMC [Enterococcus faecium 1,230,933] gi|257812999|gb|EEV41757.1| chromosome partition protein SMC [Enterococcus faecium 1,230,933] Length = 1193 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|4020|emb|CAA28789.1| unnamed protein product [Saccharomyces cerevisiae] Length = 184 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK + + F + L ++ VG+NG GK+ IL AI+ + R +S D Sbjct: 82 IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 141 Query: 64 VTRIGS 69 + R G Sbjct: 142 LIREGC 147 >gi|57642146|ref|YP_184624.1| chromosome segregation protein [Thermococcus kodakarensis KOD1] gi|68565874|sp|Q5JHN1|RAD50_PYRKO RecName: Full=DNA double-strand break repair rad50 ATPase gi|57160470|dbj|BAD86400.1| DNA double-strand break repair ATPase Rad50 homolog [Thermococcus kodakarensis KOD1] Length = 883 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 4/103 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI+ L I +FR++A ++ F + + +G NG GK++IL+A+ D+ Sbjct: 1 MKIEKLIIKDFRSHALTKVNFSSGINLIIGQNGSGKSSILDALLVGLYWPS----KPKDL 56 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 + + + ++ ++ R + ++ +D Sbjct: 57 KKDDFERINGSGTEITVFFEKGNVKYQIHRNIGRGLAFVKYHD 99 Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 10/144 (6%) Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-HRSDLIVDYCDKAITIAHGSTGEQKV 294 + A E A ++F+ + S T+ ++ L V Y K + S GE+ Sbjct: 739 LKEGALAKVGEMASEIFEELTEEKYSGVTVKAEENKVRLGVVYNGKEYGLGFLSGGERIA 798 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---DIGSQIFMTGTD 351 + + LA + ++ G +L+LDE + +LDE++R L I+ Q+ + D Sbjct: 799 LGLAFRLALSLYLA---GEISLLILDEPTPYLDEERRRRLVDIMQRYLRKIPQVIVVSHD 855 Query: 352 KSVFDSLNETAKFMRISNHQALCI 375 + + D+ + + +R+S + + Sbjct: 856 EELKDAAD---RVIRVSLENGVSV 876 >gi|317121791|ref|YP_004101794.1| chromosome segregation protein SMC [Thermaerobacter marianensis DSM 12885] gi|315591771|gb|ADU51067.1| chromosome segregation protein SMC [Thermaerobacter marianensis DSM 12885] Length = 1184 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 36/232 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A RL F T VG NG GK+N+++A+ ++ R R + Sbjct: 1 MYLKRLELYGFKSFADRTRLEFGPGITAIVGPNGSGKSNLVDAVRWVLGEQSARQLRGSK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ +G I T R R +N +R Sbjct: 61 MEDVIFAGTATRKGVGLAEVVLVLDNEDGQLPIDYSEVTVARRVDRAGGSDYLLNGQRVR 120 Query: 112 VVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161 + D + + +D I S +RR L+ + R + + Sbjct: 121 LRDVQELLYDTAIGREAYSVVGQGKIDEILSARDEDRRGLLEEAAGIVRFKVRKKEALRR 180 Query: 162 FE-------------RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 E R + R LTE + ++ +L ++ A Sbjct: 181 LEDAERRLERLGDILRELEDRLDGLTEQAKRAHLYRQWRDELVQLEARMVTA 232 >gi|228940936|ref|ZP_04103495.1| Chromosome partition protein smc [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973865|ref|ZP_04134441.1| Chromosome partition protein smc [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980455|ref|ZP_04140765.1| Chromosome partition protein smc [Bacillus thuringiensis Bt407] gi|228779275|gb|EEM27532.1| Chromosome partition protein smc [Bacillus thuringiensis Bt407] gi|228785890|gb|EEM33893.1| Chromosome partition protein smc [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818772|gb|EEM64838.1| Chromosome partition protein smc [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941617|gb|AEA17513.1| chromosome partition protein smc [Bacillus thuringiensis serovar chinensis CT-43] Length = 1189 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 107/333 (32%), Gaps = 57/333 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV---VIRVVDEL 116 D+ GS + A V D + +E + R + + I Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGESDFYINKQSCR 120 Query: 117 NKHLRISWLVPSMDR-------------IFSGLSMERRRFLDRMVFAIDPRHR------- 156 K + ++ M R I S S ERR + + + R Sbjct: 121 LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEGK 180 Query: 157 -----RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGVK 196 + + ++ R + + Y + +EA + EL K Sbjct: 181 LEETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHEK 240 Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AKK 250 R + + + + L G L D+S +L+E +K Sbjct: 241 WEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELEK 299 Query: 251 LFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 L R+ + T LIV+ +KA Sbjct: 300 LEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|327200667|pdb|3QKR|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50 gi|327200670|pdb|3QKS|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50 Length = 203 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 27/43 (62%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +K++ + + FR+++ + F + +G NG GK+++L+AI Sbjct: 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43 >gi|257881411|ref|ZP_05661064.1| chromosome partition protein SMC [Enterococcus faecium 1,231,502] gi|257890629|ref|ZP_05670282.1| chromosome partition protein SMC [Enterococcus faecium 1,231,410] gi|293562992|ref|ZP_06677459.1| chromosome segregation protein SMC [Enterococcus faecium E1162] gi|294621997|ref|ZP_06701141.1| chromosome segregation protein SMC [Enterococcus faecium U0317] gi|257817069|gb|EEV44397.1| chromosome partition protein SMC [Enterococcus faecium 1,231,502] gi|257826989|gb|EEV53615.1| chromosome partition protein SMC [Enterococcus faecium 1,231,410] gi|291598424|gb|EFF29497.1| chromosome segregation protein SMC [Enterococcus faecium U0317] gi|291605118|gb|EFF34585.1| chromosome segregation protein SMC [Enterococcus faecium E1162] Length = 1193 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|193076576|gb|ABO11235.2| putative chromosome segregation ATPase [Acinetobacter baumannii ATCC 17978] Length = 1149 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P RIF + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E+Q+ AE Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296 >gi|330813674|ref|YP_004357913.1| chromosome partition protein smc [Candidatus Pelagibacter sp. IMCC9063] gi|327486769|gb|AEA81174.1| chromosome partition protein smc [Candidatus Pelagibacter sp. IMCC9063] Length = 881 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 24/164 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K K L + F+++A F+ T VG NG GK+NI+EA+ + + + R + Sbjct: 1 MKFKQLEVVGFKSFADKTSFYFEDGLTGIVGPNGCGKSNIVEALRWCMGETSAKSLRGSG 60 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGL------ADISIKLETRDDRSVRCLQINDVV 109 DV G S + ++E L +I ++ + D+ + +N Sbjct: 61 MEDVIFSGTTSRPSKNLSEVALKLENDNRLPQFKDMPEIEVRRKIEKDKGSKYF-LNGRE 119 Query: 110 IRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145 +R D L L PSM + + +RR L+ Sbjct: 120 VRAKDVQILFADLSTGPHSPSMVSQGRVGSLVTAKPTDRRAILE 163 >gi|302348755|ref|YP_003816393.1| DNA double-strand break repair rad50 ATPase [Acidilobus saccharovorans 345-15] gi|302329167|gb|ADL19362.1| DNA double-strand break repair rad50 ATPase [Acidilobus saccharovorans 345-15] Length = 912 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + +F ++ ++ VG NG GKT++ EAI + G+R +++ R Sbjct: 5 ISKLTLKDFLSHKDTKIELPRGSIAIVGQNGAGKTSMFEAIYYALTTNGWRG-KLSNLVR 63 Query: 67 IGSPSFFSTFARVE---GMEGLADISIKLETRDD-RSVRCLQINDVVIRV-VDELNKHLR 121 G + G E A SI+ +D S L ++ ++ + + + Sbjct: 64 TGISKAAVELVLKDIDSGSEVKAIASIEKRRQDSATSGYRLTVDGKLVASTASDYREEMA 123 Query: 122 ISW 124 Sbjct: 124 KVL 126 Score = 39.9 bits (92), Expect = 0.62, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 24/168 (14%) Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + AQ+A + +I A+ E A Y ++++ L L ++ L+ Sbjct: 714 LSAQLASVSSRIEQAKKEADKA-------YEEEQSLSKALDKLDAALGAV--EALERLER 764 Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDL------------IVDYCDKAITIAHGSTGEQK 293 ++ + + + G + + +VD + IA S GEQ Sbjct: 765 TLYRRALVSLENEMNEIFRVFGLDYARVEVKETEDAFYFVVVDRQGRERPIASLSGGEQI 824 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 V+ + LA R++ + G LLLDE + LD+++R AL ++ + Sbjct: 825 VIALAYVLALNRMMHSNIG---FLLLDEPTDMLDDERRRALVDVLGKL 869 >gi|228922929|ref|ZP_04086223.1| DNA repair protein recN [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836700|gb|EEM82047.1| DNA repair protein recN [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 600 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 61/282 (21%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 D+E+L + L S E QMA R+++I I + K Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKL 229 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + +L+ F++ + AL + Y DG+ +D++ Sbjct: 230 D-EENELTEERLQISNFEKIYKALGDAYRSLSADGQGLDNVR 270 >gi|169797011|ref|YP_001714804.1| putative chromosome segregation ATPases [Acinetobacter baumannii AYE] gi|213156585|ref|YP_002318246.1| chromosome segregation protein SMC [Acinetobacter baumannii AB0057] gi|215484471|ref|YP_002326706.1| chromosome segregation protein SMC [Acinetobacter baumannii AB307-0294] gi|301347732|ref|ZP_07228473.1| chromosome segregation protein SMC [Acinetobacter baumannii AB056] gi|301512480|ref|ZP_07237717.1| chromosome segregation protein SMC [Acinetobacter baumannii AB058] gi|301594388|ref|ZP_07239396.1| chromosome segregation protein SMC [Acinetobacter baumannii AB059] gi|332852099|ref|ZP_08433926.1| segregation protein SMC [Acinetobacter baumannii 6013150] gi|332867497|ref|ZP_08437650.1| segregation protein SMC [Acinetobacter baumannii 6013113] gi|169149938|emb|CAM87832.1| putative chromosome segregation ATPases [Acinetobacter baumannii AYE] gi|213055745|gb|ACJ40647.1| chromosome segregation protein SMC [Acinetobacter baumannii AB0057] gi|213988534|gb|ACJ58833.1| chromosome segregation protein SMC [Acinetobacter baumannii AB307-0294] gi|332729471|gb|EGJ60810.1| segregation protein SMC [Acinetobacter baumannii 6013150] gi|332733914|gb|EGJ65059.1| segregation protein SMC [Acinetobacter baumannii 6013113] Length = 1149 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P RIF + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E+Q+ AE Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296 >gi|163790809|ref|ZP_02185234.1| chromosome partition protein SMC [Carnobacterium sp. AT7] gi|159873877|gb|EDP67956.1| chromosome partition protein SMC [Carnobacterium sp. AT7] Length = 1190 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 5/109 (4%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 +++K ++I+ F+++A + F T VG NG GK+NI EAI L R R Sbjct: 1 MQLKRIDIAGFKSFADKTTIEFHDGVTAVVGPNGSGKSNITEAIRWVLGEQSARNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 D+ GS + S A V + D + LE + R L N Sbjct: 61 MNDIIFSGSDTRKSVNLAEVTLILENEDHFLPLEFSEISITRRLHRNGE 109 >gi|69246106|ref|ZP_00603812.1| SMC protein, N-terminal:Structural maintenance of chromosome protein SMC, C-terminal:SMCs flexible hinge [Enterococcus faecium DO] gi|258615163|ref|ZP_05712933.1| chromosome partition protein SMC [Enterococcus faecium DO] gi|68195401|gb|EAN09848.1| SMC protein, N-terminal:Structural maintenance of chromosome protein SMC, C-terminal:SMCs flexible hinge [Enterococcus faecium DO] Length = 1193 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|239501243|ref|ZP_04660553.1| chromosome segregation ATPase [Acinetobacter baumannii AB900] Length = 1149 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P RIF + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E+Q+ AE Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296 >gi|260558339|ref|ZP_05830535.1| chromosome partition protein SMC [Enterococcus faecium C68] gi|260075513|gb|EEW63819.1| chromosome partition protein SMC [Enterococcus faecium C68] Length = 1193 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|237725014|ref|ZP_04555495.1| predicted protein [Bacteroides sp. D4] gi|229436752|gb|EEO46829.1| predicted protein [Bacteroides dorei 5_1_36/D4] Length = 722 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 5 IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59 ++IK ++I FR+Y + F T+ +GDNG GKT EA+ +L R Sbjct: 1 MRIKSIDIKNFRSYYGENNHFEFSDGLTLILGDNGDGKTTFFEALEWLFDTTSERAN 57 >gi|325280472|ref|YP_004253014.1| hypothetical protein Odosp_1818 [Odoribacter splanchnicus DSM 20712] gi|324312281|gb|ADY32834.1| hypothetical protein Odosp_1818 [Odoribacter splanchnicus DSM 20712] Length = 535 Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDA---QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 ++IK + + F+ + L + + + VG NG GKT+I EA + RGFR S Sbjct: 1 MRIKEIKLRHFKRFTDLTICGIPETAKLVVLVGPNGCGKTSIFEAFNHWYRYRGFRHGSD 60 >gi|313227430|emb|CBY22577.1| unnamed protein product [Oikopleura dioica] Length = 1237 Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 95/265 (35%), Gaps = 44/265 (16%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63 +++L I +F++Y +++ + T +G NG GK+N+++AISF+ + R + + Sbjct: 4 LEYLEIEDFKSYKGKIKVGPFHKFTAIIGPNGSGKSNLMDAISFVLGEKSSNMRVSRVSQ 63 Query: 64 VTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 + G+P + S ++E EG + SI+ + I+D + D Sbjct: 64 LI-HGAPVGEPVANTARVSALIKMENEEGHLE-SIEFMRVIKDNSTHFYIDDCSVSAADY 121 Query: 116 LNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERL- 165 +K + + S + + ER + + + D+E+ Sbjct: 122 RSKLETFNIFINSKNFLVYQGKVEEIAMKNPKERMTMFEEISGS-----AEYKQDYEKAK 176 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPH 223 + R + +A A K I R E ++ + +E Sbjct: 177 IEQR--------------DADDASKAAHIKKKGIAQERKEAREEVAQVHQYEKLQEELEE 222 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYA 248 ++ F D + KE+ Sbjct: 223 ARIQEKLFQLFIIDNNVTKYKEQLR 247 >gi|307296240|ref|ZP_07576067.1| chromosome segregation protein SMC [Sphingobium chlorophenolicum L-1] gi|306878042|gb|EFN09265.1| chromosome segregation protein SMC [Sphingobium chlorophenolicum L-1] Length = 1147 Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 18/128 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++IK L +S F+++ L + T VG NG GK+N+LEAI ++ S + R Sbjct: 1 MQIKRLKLSGFKSFVDPTELRIEPGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGGG 60 Query: 61 YADVTRIG-SPSFFSTFARV------------EGMEGLADISIKLETRDDRS-VRCLQIN 106 DV G + FA V +E AD +++ R +R + N Sbjct: 61 MEDVIFAGTATRPQRDFAEVSLMTVQEQGELFNAVEVAADGELEVTRRIERGAGSAYRAN 120 Query: 107 DVVIRVVD 114 +R D Sbjct: 121 GRDVRAKD 128 Score = 36.8 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K + S GEQ + V + T API +LDE+ A LD+ + Sbjct: 1037 GKKLAALTLLSGGEQALTAVALIFGLF-----LTNPAPICVLDEVDAPLDDANVERFCDL 1091 Query: 338 VTDIGSQI 345 + + Q Sbjct: 1092 LDAMVGQT 1099 >gi|300361932|ref|ZP_07058109.1| chromosome segregation protein Smc [Lactobacillus gasseri JV-V03] gi|300354551|gb|EFJ70422.1| chromosome segregation protein Smc [Lactobacillus gasseri JV-V03] Length = 1186 Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 53/301 (17%), Positives = 103/301 (34%), Gaps = 56/301 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + ++ L ++ F+++A + F+ T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116 DV GS A VE + D + + ++ R + N +++ Sbjct: 61 MKDVIFAGSQMRAPMNHAEVELIFDNRDHQLASDEKEVIVTRKILRNGESDYLLNHHPVR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161 K +R ++ M D I + +RR + V + + Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRRGIFEEAAGVLHFKQQKETALKQ 180 Query: 162 FERL--------------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 ++ + ++ L E F Q+ LG++I Sbjct: 181 LDKTNANLIRINDLVKELEGRIEPLHEQSSLAKEYKFQKEQLDHKLKQL--LGLEI---- 234 Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 +L+ + +K N L LD + QS L+E+ + + D Sbjct: 235 ----ESLNEEKKDVAKKANANQEILD---KLDNEVKQSQADLEEKRKQSNKRHAEKDEKQ 287 Query: 262 R 262 + Sbjct: 288 Q 288 >gi|260550984|ref|ZP_05825189.1| chromosome segregation protein SMC [Acinetobacter sp. RUH2624] gi|260405932|gb|EEW99419.1| chromosome segregation protein SMC [Acinetobacter sp. RUH2624] Length = 1149 Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P RIF + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E+Q+ AE Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296 >gi|184157076|ref|YP_001845415.1| chromosome segregation ATPase [Acinetobacter baumannii ACICU] gi|332872652|ref|ZP_08440620.1| segregation protein SMC [Acinetobacter baumannii 6014059] gi|183208670|gb|ACC56068.1| Chromosome segregation ATPase [Acinetobacter baumannii ACICU] gi|323516842|gb|ADX91223.1| chromosome segregation ATPase [Acinetobacter baumannii TCDC-AB0715] gi|332739181|gb|EGJ70040.1| segregation protein SMC [Acinetobacter baumannii 6014059] Length = 1149 Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P RIF + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E+Q+ AE Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296 >gi|84687366|ref|ZP_01015245.1| hypothetical protein 1099457000267_RB2654_22973 [Maritimibacter alkaliphilus HTCC2654] gi|84664663|gb|EAQ11148.1| hypothetical protein RB2654_22973 [Rhodobacterales bacterium HTCC2654] Length = 543 Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 66/369 (17%), Positives = 121/369 (32%), Gaps = 51/369 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ I +R + F+ + + VG+N GK+ +LEAI G+ + + Sbjct: 14 IQRAVIRNYRCLKQANVTFNNELNVIVGNNESGKSTLLEAIHLALTGQ----LNGRPLQI 69 Query: 67 IGSPSFFSTFARVEGMEGLAD--------ISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 P F+ +E +E L + I I++ DD ++ L+ N+ + + +L Sbjct: 70 ELHPYLFNLDHVLEYIEALNNGQAPEPPSILIEVYLADDPALTKLKGNNNTLGI--DLPG 127 Query: 119 HLRISWLVP---SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + L P ++ E R + ++ R L Sbjct: 128 VSLLIELNPAHAEDFALYVSDPSEIRTIPMEYYWIKWRDFAE-----NDILNSRAIPLHA 182 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARV---EMINALSSLIMEYVQKENFPHIKLSLTGFL 232 D+S + A + + I + E ++ + + + P +K Sbjct: 183 SLIDASTIKN-NAGASRYVINIVKESLTSKEKVDLALTYRLMKDRFLEEPKVKTINDTLA 241 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 K S + + M PH D+ + K GEQ Sbjct: 242 SKKGSISDKVISVSLDTSARANWEAGIM-------PHLDDIPLPLVGK---------GEQ 285 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGT 350 V + LA T+ + I+L++E HL N L + QIF+T Sbjct: 286 NSVKI--KLA-----METSAKSHIILIEEAENHLSYASLNELIGHIATNAGSRQIFITTH 338 Query: 351 DKSVFDSLN 359 V + L Sbjct: 339 SSFVLNKLG 347 >gi|218441332|ref|YP_002379661.1| chromosome segregation protein SMC [Cyanothece sp. PCC 7424] gi|218174060|gb|ACK72793.1| chromosome segregation protein SMC [Cyanothece sp. PCC 7424] Length = 1190 Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 95/256 (37%), Gaps = 44/256 (17%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + +S F+++ + + F T+ G NG GK+NIL+A+ F L+ +G R Sbjct: 2 VHIKRVELSHFKSFGGTTSIPFLPGFTVISGPNGSGKSNILDALLFCLGLATSKGMRAER 61 Query: 61 YADVTRIG-------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------- 104 D+ + + S + + G D + + R L+ Sbjct: 62 LPDLVNHNHTNGRKTTEASVSVTFDLSDVSGEDDTNKTEPLTEWTITRRLRVTQGGNYSS 121 Query: 105 ---INDVVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLDRMVFAID 152 IN+ V+EL++ L + P + RI + S ERR +D + Sbjct: 122 TYYINNQPC-TVNELHEQLNRFRIYPEGYNVVLQGDVTRIITMNSRERREIIDELAG--- 177 Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--VEMINALSS 210 + +F+R + L C IE ++ ++ R E L + Sbjct: 178 ------VAEFDRKIDKTKETLESVREREERCRIIEQELKRSLDRLASDRVKAEKYKKLKA 231 Query: 211 LIMEYVQKENFPHIKL 226 I E Q E ++L Sbjct: 232 EIQEKQQWEIVLQVRL 247 >gi|14488688|pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain Length = 195 Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 27/43 (62%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +K++ + + FR+++ + F + +G NG GK+++L+AI Sbjct: 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43 >gi|329666213|pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular Clamp In Dna Double-Strand Break Repair gi|329666214|pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular Clamp In Dna Double-Strand Break Repair Length = 365 Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 55/384 (14%), Positives = 133/384 (34%), Gaps = 57/384 (14%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 + L + F ++ + F + T+ G NG GK+++ EAISF G G R + D Sbjct: 4 ERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDYVNR 63 Query: 68 GS-PSFFSTFARVEGMEGLADISIK---LETRDDRSVRCLQINDVVIRVVD--------- 114 + + E +I + L+ + + + + N + Sbjct: 64 NAVDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEV 123 Query: 115 ------ELNKHLRISWLV-PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 E +R +L +D++ E + + + + + + E+ + Sbjct: 124 EKILGIEHRTFIRTVFLPQGEIDKLLISPPSEITEIISDVFQSKETLEKLEKLLKEKXKK 183 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 N + + G + S+E ++ E + N ++ L + + K + Sbjct: 184 LENEISSGGAGGAG--GSLEKKLKEXSDEYNN-----LDLLRKYLFD----------KSN 226 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGR---KMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 + + G+ ++ + Y L +GR D I+ Sbjct: 227 FSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGG---------FIIKDWGIERPA 277 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--- 341 S GE+ ++ + + + A + +G +DE + LD + + + ++ ++ Sbjct: 278 RGLSGGERALISISLAXSLAEV---ASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334 Query: 342 -GSQIFMTGTDKSVFDSLNETAKF 364 +F+T D+ ++ + + Sbjct: 335 NKVIVFITH-DREFSEAFDRKLRI 357 >gi|189346970|ref|YP_001943499.1| SMC domain protein [Chlorobium limicola DSM 245] gi|189341117|gb|ACD90520.1| SMC domain protein [Chlorobium limicola DSM 245] Length = 423 Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +KI+ L + FR L L F++ T+ NG GKT +++A++ L R + Sbjct: 2 MKIRTLRLINFRGIEELSLPFESGLTVIAAVNGGGKTTVIDALAMLLSWLTARTRRDS 59 >gi|322506975|gb|ADX02429.1| Putative chromosome segregation ATPase [Acinetobacter baumannii 1656-2] Length = 1149 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P RIF + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E+Q+ AE Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296 >gi|67469325|ref|XP_650641.1| structural maintenance of chromosomes protein [Entamoeba histolytica HM-1:IMSS] gi|56467288|gb|EAL45255.1| structural maintenance of chromosomes protein [Entamoeba histolytica HM-1:IMSS] Length = 1023 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 6/122 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ + + F + L L Q VG+NG GK+ IL A++ + R +D Sbjct: 9 IERIELENFMCHKHLILDLSPQVNFIVGENGSGKSAILVALAICFGAKAQFTNRGKRASD 68 Query: 64 VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + +IG + R G L +R + + +V I Sbjct: 69 IIKIGENYCKIIVYLRNRGESSLNHDKYGDTVIIER--KITKEGGNTYKVSSLFIGEKPI 126 Query: 123 SW 124 Sbjct: 127 II 128 >gi|325265085|ref|ZP_08131812.1| putative RecF/RecN/SMC N domain protein [Clostridium sp. D5] gi|324029775|gb|EGB91063.1| putative RecF/RecN/SMC N domain protein [Clostridium sp. D5] Length = 1186 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 96/264 (36%), Gaps = 28/264 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ ++ F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVQGFKSFANKIKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + + + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNSDHQLPVEYEEVTVTRKLYRSGESEYLINGAGCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ + Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNLS-VR 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 +L R L S +E Q+ L + +AR E + L + Sbjct: 180 KLDEERQNLTRVN----DILSELEKQIGPLKRQSEVAR-EYLKKKEELKTYDINMFLLET 234 Query: 224 IKL-SLTGFLDGKFDQSFCALKEE 246 ++ LD K+ + L+E Sbjct: 235 ERIKEQIRELDSKYQIASDELEEA 258 Score = 40.3 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 100/280 (35%), Gaps = 33/280 (11%) Query: 86 ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 A+I +++++ + Q + + +EL+KH+ +D+ LS R + + Sbjct: 883 AEIDAEIKSQVAKREELNQKHKEFLGKREELSKHM------SELDKECFRLSSRRESYEE 936 Query: 146 RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 I+ + + M RN LT+ + +++ ++ +LG A + Sbjct: 937 ASEKQINYMWDEYELTYNHAMELRNENLTDLSYMKRQIQALKGEIKKLGSVNVNAIDDYK 996 Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 + Q ++ + +L +D +E++A ++ D + ++ L Sbjct: 997 SVSERYEFLKGQHDDLVEAEATLMKIIDELDAAMRKQFEEQFA---LISKEFDIVFKQ-L 1052 Query: 266 IGPHRSDLI-----------VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISN 309 G + L + + S GE+ + + + A Sbjct: 1053 FGGGKGTLELMEDEDILEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQ 1107 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 +P LLDEI A LD++ + + + +Q + Sbjct: 1108 NLKPSPFCLLDEIEAALDDNNVVRFAQYLHKLTKNTQFIV 1147 >gi|257899382|ref|ZP_05679035.1| chromosome partition protein SMC [Enterococcus faecium Com15] gi|257837294|gb|EEV62368.1| chromosome partition protein SMC [Enterococcus faecium Com15] Length = 1193 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|254172927|ref|ZP_04879601.1| RecF/RecN/SMC N terminal domain, putative [Thermococcus sp. AM4] gi|214033083|gb|EEB73911.1| RecF/RecN/SMC N terminal domain, putative [Thermococcus sp. AM4] Length = 429 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +++K L + F++ + + + + +G N GKTN++E L Sbjct: 1 MRLKKLVVKNFKSLRDCEIELN-KFNVLIGPNASGKTNLVEVFKLL 45 >gi|295706310|ref|YP_003599385.1| chromosome segregation protein SMC [Bacillus megaterium DSM 319] gi|294803969|gb|ADF41035.1| chromosome segregation protein SMC [Bacillus megaterium DSM 319] Length = 1186 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 110/283 (38%), Gaps = 43/283 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L+I+ F+++A + + F T VG NG GK+NI +AI ++ + R Sbjct: 1 MFLKRLDIAGFKSFAEKVSIDFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFSTFA-----RVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS S + +E + + + + R RS IN+ R Sbjct: 61 MEDIIFAGSESRRAVNVADVTLTLENDDQFLPLDYHEVSITRRVYRSGDSEFFINNQPCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162 + ++ S L I S S ERR+ + ++ + Sbjct: 121 -LKDIVDLFMDSGLGREAFSIISQGKVEEVLSSKSDERRKIFEE---------AAGVLKY 170 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENF 221 + R R L + ++ + E+ ++ E + SS+ +Y+Q KE Sbjct: 171 KT--RKRKAELRLLETQENLNRVVDI-LHEIEGQL-----EPLQIQSSIAKDYLQKKEEL 222 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYA--KKLFDGRKMDSMSR 262 HI +++T F Q + LK E A ++L + + +R Sbjct: 223 EHIDVAVTVFEVEDLHQKWGKLKAEMAQHEQLEESLATNIRTR 265 >gi|293570731|ref|ZP_06681781.1| chromosome segregation protein SMC [Enterococcus faecium E980] gi|291609203|gb|EFF38475.1| chromosome segregation protein SMC [Enterococcus faecium E980] Length = 1193 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|227872402|ref|ZP_03990749.1| possible SMC structural maintenance of chromosomes partitioning protein [Oribacterium sinus F0268] gi|227841762|gb|EEJ52045.1| possible SMC structural maintenance of chromosomes partitioning protein [Oribacterium sinus F0268] Length = 1087 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 105/291 (36%), Gaps = 36/291 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60 + +K + I F+++A+ L F T VG NG GK+NI +A+ ++ + R S Sbjct: 1 MYLKSIEIQGFKSFANKTVLDFSPGITGIVGPNGSGKSNISDAVRWVLGEQKVKQLRGNS 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADI-------SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ +A V AD I + R RS ++ND R Sbjct: 61 MQDVIFSGTALRRAQGYAYVSMCFDNADHALNLPYEEITVSRRLYRSGESEYRLNDAECR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG + ERR D V + + R+ + Sbjct: 121 LKDIHELFYDTGIGKEGYSLIGQGQIDKILSGKAEERRALFDEAVGIVKFKRRKDISQ-- 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL------GVKINIARVEMI----NALSSLIM 213 + + + S +E Q+A L R +++ N + Sbjct: 179 KKLEEEQANMERIQ---DILSELEKQLAPLERQSGKAKNYLQLRDKLLLYEANLFLLEMK 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 E + K+ + + ++ L + + +G +++ +R Sbjct: 236 EAEKGLEELAEKIENLSYYQKEEEEKQNRLTQAFLAMEREGDALEAEEQRI 286 >gi|320537846|ref|ZP_08037762.1| hypothetical protein HMPREF9554_02516 [Treponema phagedenis F0421] gi|320145303|gb|EFW37003.1| hypothetical protein HMPREF9554_02516 [Treponema phagedenis F0421] Length = 536 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 + IK + I F+ + L + + + VG+N GK+ ILEAI+ G Sbjct: 1 MTIKKIKIFNFKCFKEFTLELNPEFNVLVGNNEAGKSTILEAINLALTG 49 >gi|268325372|emb|CBH38960.1| hypothetical protein BSM_24370 [uncultured archaeon] Length = 74 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + +R Y ++ + +G NGVGKT +E+I ++ G + ++ Sbjct: 1 MLLKTLTLRNYRKYKNVNVEIPDGVIGIIGLNGVGKTTFIESIGWVLFGH-HAARTTKEL 59 Query: 65 TRIGSPSF 72 + S Sbjct: 60 IKREGASH 67 >gi|262276826|ref|ZP_06054619.1| chromosome segregation protein SMC [alpha proteobacterium HIMB114] gi|262223929|gb|EEY74388.1| chromosome segregation protein SMC [alpha proteobacterium HIMB114] Length = 809 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 24/164 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K K + +S F+++A F+ T VG NG GK+N++EA+ + + + R + Sbjct: 1 MKFKEIEVSGFKSFADKTNFYFEKGLTGIVGPNGCGKSNVVEALRWAMGETSAKSLRGSG 60 Query: 61 YADVTRIG-----SPSFFSTFARVEGME------GLADISIKLETRDDRSVRCLQINDVV 109 DV G S + ++E + G+ +I IK + D+ + IN Sbjct: 61 MEDVIFNGTSNRPSKNICEVSIKLENNDDVAQFKGIPEIEIKRKLEKDKGSK-YYINGKE 119 Query: 110 IRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145 +R D + L PSM + + +RR L+ Sbjct: 120 VRAKDVQIVFADLSTGPHSPSMVSQGRVGALITAKPTDRRAILE 163 >gi|12860408|dbj|BAB31946.1| unnamed protein product [Mus musculus] Length = 284 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 98/280 (35%), Gaps = 34/280 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + +M ++ + + Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234 Query: 224 IKLSLTGFLDGKFDQSFCALKE------EYAKKLFDGRKM 257 I D K ++S LKE + L + K Sbjct: 235 IAYQFLRAEDTK-ERSAGELKEMQDKIVNLQEVLSENEKK 273 >gi|254172444|ref|ZP_04879119.1| DNA double-strand break repair Rad50 ATPase [Thermococcus sp. AM4] gi|214033373|gb|EEB74200.1| DNA double-strand break repair Rad50 ATPase [Thermococcus sp. AM4] Length = 885 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 101/279 (36%), Gaps = 43/279 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + I FR + + F + +G NG GK++ILEAI Sbjct: 1 MRVRKIEIRNFRAHRKSVVEFSDGINLIIGQNGAGKSSILEAIFASLYL----------- 49 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIRVVD 114 G PSF + + G ++S+ LE TR + L+ ++ Sbjct: 50 ---GHPSFPKGYLKANARVGTGELSLSLEFEHNGKTYRITRTTKKSELLENGRLIAEKSS 106 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA---IDPRHRRRMI--DFERLMRGR 169 ++ + + + +I++ R+ ++ ++ ++ R+ + D+E R Sbjct: 107 DIARWVERNVYP---LQIYTNALYIRQGEIEGIITNREVMEKVLRKVLGIEDYENAERNS 163 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL--IMEYVQKENFPHIKLS 227 ++ E + + AE+ + A L + + + ++ + KLS Sbjct: 164 ADVIRELKRRKENLKRLIERKAEIEENLRDAEKRFAETLRKISELRKRERELSAEVEKLS 223 Query: 228 LTGFLDGKFDQSFCALKEEYA---------KKLFDGRKM 257 + + +L++ A +KL R+ Sbjct: 224 KLYQEMKERKELITSLEKRIALLEKSLASEEKLLREREK 262 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 25/216 (11%) Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKI---------NIARVEMINALSSLIMEYVQK 218 ++R+L + S+ ++A L ++ +E++ S I + +K Sbjct: 669 EKSRVLERARAEREGAESLRDEIARLIDELKANLWEIEKAEKELELVEKALSDITAFREK 728 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDY 277 + L G + L E ++ +G+ RR G R +L V Y Sbjct: 729 IARLKAEEELRGL------EEVQKLAGELFSEMTEGKYQGIRLRREKKYGKERIELKVLY 782 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + I S GE+ + + LA + G +L+LDE + LDE++R L I Sbjct: 783 AGNEVGIDFLSGGERIALGLAFRLALSLY---KVGNLELLILDEPTPFLDEERRKKLVEI 839 Query: 338 VTD---IGSQIFMTGTDKSVFDSLNETAKFMRISNH 370 ++ Q+ + D+ + D+ + +R++N Sbjct: 840 ISSQLRKIPQVIIVSHDEELKDAAD---YVIRVTNA 872 >gi|118442990|ref|YP_878289.1| chromosome segregation protein SMC [Clostridium novyi NT] gi|118133446|gb|ABK60490.1| chromosome segregation protein SMC [Clostridium novyi NT] Length = 1185 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L I F+++A LVF T VG NG GK+NIL+A+ ++ + R Sbjct: 1 MFLKSLEIRGFKSFADKTELVFKKGITAIVGPNGSGKSNILDAVKWVLGEQSVKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ + I + + R RS IN R Sbjct: 61 MQDVIFSGTEYRKPVGLSQVTLVLDNSDEELPIDYSEVTIMRRLFRSGESEYYINGTKCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + K ++ + SG ERR L+ Sbjct: 121 LKDIQELFMDTGIGKEGYSIIGQGKIEALLSGKPEERRSLLE 162 >gi|291550078|emb|CBL26340.1| condensin subunit Smc [Ruminococcus torques L2-14] Length = 1186 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 81/214 (37%), Gaps = 33/214 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ ++ F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVQGFKSFANKIKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + + + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNSDHKLPVEYEEVTVTRKLYRSGESEYLINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D ++ ++ Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDE---------AAGIVKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197 R ++ L + + + + +AEL +I Sbjct: 172 R---RKSLSLKKLEDERQNLTRVNDILAELEKQI 202 >gi|323701144|ref|ZP_08112819.1| ATPase-like protein, involved in DNA repair [Desulfotomaculum nigrificans DSM 574] gi|323533746|gb|EGB23610.1| ATPase-like protein, involved in DNA repair [Desulfotomaculum nigrificans DSM 574] Length = 416 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 87/263 (33%), Gaps = 26/263 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RR 58 +KIK L + FRN+ + L D Q FVG N GKT +L A+ + G R Sbjct: 1 MKIKKLGVQNFRNHEATELELD-QVNFFVGHNNAGKTTLLAALEWALTGHCLWTDRAGRG 59 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV---DE 115 + A++ G + VEG+ + L + S+R ++ + Sbjct: 60 S--AELICRGQKQA-AVSLEVEGLGSI------LRSMPPNSLRVGKLTGQEAQASILNSL 110 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 R+ + + + E+R FL + ++ + + Sbjct: 111 RTDEERLQIALNASAFLVM-PPSEQRAFLFGAFGLACTAETVAEKLAAWLKATGHSEEKA 169 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 T + +++ R L + Q+ +LS L+ Sbjct: 170 TALAGQAKGYYPANLTGGSEVLEVMEKRA---KDLRKELKRDKQRTEAALAELSDGALLE 226 Query: 234 GKFDQSFCALKEEYAKKLFDGRK 256 D+ LK + A+ L R+ Sbjct: 227 TPADEQVEELKGQLAQ-LRQHRE 248 >gi|229152047|ref|ZP_04280242.1| Chromosome partition protein smc [Bacillus cereus m1550] gi|228631396|gb|EEK88030.1| Chromosome partition protein smc [Bacillus cereus m1550] Length = 1189 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|323488933|ref|ZP_08094170.1| DNA repair protein recN (recombination protein N) [Planococcus donghaensis MPA1U2] gi|323397325|gb|EGA90134.1| DNA repair protein recN (recombination protein N) [Planococcus donghaensis MPA1U2] Length = 565 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 34/253 (13%), Positives = 81/253 (32%), Gaps = 47/253 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I F +L + F T+ G+ G GK+ I++A+ L+ GRG + R Sbjct: 2 LRELDIRNFAIIDALTVSFAEGLTVLTGETGAGKSIIIDAVHLLAGGRG-----SQEFIR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETR-------------------DDRSVRCLQIND 107 G+ A +EG+ L D + + +D+ +IN Sbjct: 57 HGAKK-----AEIEGLFSLEDEQHPVFRKLDEFGITKSDGDILLRRELNDKGKNVCRING 111 Query: 108 VVI---------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158 ++ + +++ L+ ++ +F + + + Sbjct: 112 KLVTISILREVGASLIDIHGQHETQELMDEKQHLYLLD-----QFAGKSLAKSKESYSHT 166 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM--AELGVKINIARVEMI--NALSSLIME 214 + +L R + + + Q+ E + E++ + Sbjct: 167 FDKYTKLKREFSSYTENEQQIAQRIDLLTFQLQEIEAAELVIGEEEELVLERKKMQNFNK 226 Query: 215 YVQKENFPHIKLS 227 + + H + Sbjct: 227 IYESISAAHEAIQ 239 >gi|193785557|dbj|BAG50923.1| unnamed protein product [Homo sapiens] Length = 1197 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|306829618|ref|ZP_07462808.1| cell division protein Smc [Streptococcus mitis ATCC 6249] gi|304428704|gb|EFM31794.1| cell division protein Smc [Streptococcus mitis ATCC 6249] Length = 1179 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 26/219 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A IK+E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNEDGFIKDAGQVIKVERHIYRSGDSEYRIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 ++ L ++ Q+ L + AR Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLAKQAENARK 214 >gi|229071346|ref|ZP_04204569.1| Chromosome partition protein smc [Bacillus cereus F65185] gi|229081103|ref|ZP_04213613.1| Chromosome partition protein smc [Bacillus cereus Rock4-2] gi|228702147|gb|EEL54623.1| Chromosome partition protein smc [Bacillus cereus Rock4-2] gi|228711800|gb|EEL63752.1| Chromosome partition protein smc [Bacillus cereus F65185] Length = 1189 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|219518159|gb|AAI44164.1| SMC2 protein [Homo sapiens] Length = 1197 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFFSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|218233136|ref|YP_002368649.1| chromosome segregation SMC protein [Bacillus cereus B4264] gi|218161093|gb|ACK61085.1| chromosome segregation SMC protein [Bacillus cereus B4264] Length = 1189 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|158711736|ref|NP_001102136.2| structural maintenance of chromosomes protein 2 [Rattus norvegicus] Length = 1191 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 97/270 (35%), Gaps = 30/270 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLF 252 + ++ L + ++S LKE K L Sbjct: 233 LYIAYQFLLAEDTKERSAGELKEMQDKILK 262 >gi|3851584|gb|AAC72360.1| chromosome-associated protein-E [Homo sapiens] Length = 1197 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|228960064|ref|ZP_04121728.1| Chromosome partition protein smc [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799580|gb|EEM46533.1| Chromosome partition protein smc [Bacillus thuringiensis serovar pakistani str. T13001] Length = 1189 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|229173819|ref|ZP_04301359.1| hypothetical protein bcere0006_29170 [Bacillus cereus MM3] gi|228609669|gb|EEK66951.1| hypothetical protein bcere0006_29170 [Bacillus cereus MM3] Length = 592 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 60/362 (16%), Positives = 127/362 (35%), Gaps = 49/362 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI+++ I FRN+ + + F Q T+ +G N +GKTN++ A+ L R S D+ Sbjct: 1 MKIEWIKIKGFRNFDNETINFAEQ-TLIIGANDIGKTNLIYALRLLFD----RSLSDRDL 55 Query: 65 TRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNK 118 + S S V+ ++ D I + D +Q + L+ Sbjct: 56 DLLSSDYNVYTKADSIEITVKLVDVKEDCLITVFKGDLNEGTVYIQYKNSKNGEYSILSG 115 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 PS + + S + L+ + + F + R +N++L + Sbjct: 116 --------PSEEAVEIKNSRFYIKRLNMEYVNTNR----NLESFMK--REKNQILEDAKL 161 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 + + QM E + +E++N + Q + + +L + + Sbjct: 162 KLTEQQT---QMDEQSIFKIKRGLEVVNKRVDRLNYIQQSLSKVNEELGSLAIHNESQEL 218 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 SF + A+ L +L + Y + + G G + + Sbjct: 219 SFKNANSDAARML-------------------DNLELTYSTQEGALTLGGDGRNNQIFLA 259 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSVFDS 357 +++ + I + ++E AHL ++ L ++ Q+F+T + Sbjct: 260 TWISKQKNIKSLEKVT-FYAIEEPEAHLHPQQQRKLSSYLLEKFDEQVFITTHSPHIASE 318 Query: 358 LN 359 Sbjct: 319 FK 320 >gi|158258635|dbj|BAF85288.1| unnamed protein product [Homo sapiens] Length = 1197 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|114625950|ref|XP_001137286.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform 8 [Pan troglodytes] gi|114625952|ref|XP_001137366.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform 9 [Pan troglodytes] gi|114625954|ref|XP_001137448.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform 10 [Pan troglodytes] Length = 1197 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|110347418|ref|NP_006435.2| structural maintenance of chromosomes protein 2 [Homo sapiens] gi|110347420|ref|NP_001036015.1| structural maintenance of chromosomes protein 2 [Homo sapiens] gi|110347425|ref|NP_001036016.1| structural maintenance of chromosomes protein 2 [Homo sapiens] gi|215273886|sp|O95347|SMC2_HUMAN RecName: Full=Structural maintenance of chromosomes protein 2; Short=SMC protein 2; Short=SMC-2; AltName: Full=Chromosome-associated protein E; Short=hCAP-E; AltName: Full=XCAP-E homolog gi|42627769|tpe|CAD89875.1| TPA: SMC2 protein [Homo sapiens] gi|55957990|emb|CAI16866.1| structural maintenance of chromosomes 2 [Homo sapiens] gi|55958454|emb|CAI16923.1| structural maintenance of chromosomes 2 [Homo sapiens] gi|57997175|emb|CAI46187.1| hypothetical protein [Homo sapiens] gi|119579377|gb|EAW58973.1| SMC2 structural maintenance of chromosomes 2-like 1 (yeast), isoform CRA_a [Homo sapiens] gi|119579379|gb|EAW58975.1| SMC2 structural maintenance of chromosomes 2-like 1 (yeast), isoform CRA_a [Homo sapiens] gi|119579381|gb|EAW58977.1| SMC2 structural maintenance of chromosomes 2-like 1 (yeast), isoform CRA_a [Homo sapiens] gi|120659846|gb|AAI30386.1| Structural maintenance of chromosomes 2 [Homo sapiens] Length = 1197 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|229146419|ref|ZP_04274790.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST24] gi|228637052|gb|EEK93511.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST24] Length = 1189 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|300777524|ref|ZP_07087382.1| SMC domain protein [Chryseobacterium gleum ATCC 35910] gi|300503034|gb|EFK34174.1| SMC domain protein [Chryseobacterium gleum ATCC 35910] Length = 692 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 8/93 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + I+ FRN+ + + F+ + +G N GK+N++ A+S + + + Sbjct: 1 MYISQIKITNFRNFENTTVDFNDGINVVIGHNNAGKSNLVSALSLVMD-----NSKSKRL 55 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97 F+ + +SI++ + Sbjct: 56 ---NIDDFYKLIPTAHLLTSPPKVSIEITIKKG 85 >gi|30021936|ref|NP_833567.1| chromosome partition protein smc [Bacillus cereus ATCC 14579] gi|229129124|ref|ZP_04258097.1| Chromosome partition protein smc [Bacillus cereus BDRD-Cer4] gi|29897492|gb|AAP10768.1| Chromosome partition protein smc [Bacillus cereus ATCC 14579] gi|228654361|gb|EEL10226.1| Chromosome partition protein smc [Bacillus cereus BDRD-Cer4] Length = 1189 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|228922602|ref|ZP_04085902.1| Chromosome partition protein smc [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837031|gb|EEM82372.1| Chromosome partition protein smc [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1189 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|226951285|ref|ZP_03821749.1| possible RecF/RecN/SMC N domain protein [Acinetobacter sp. ATCC 27244] gi|226837969|gb|EEH70352.1| possible RecF/RecN/SMC N domain protein [Acinetobacter sp. ATCC 27244] Length = 351 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 55/397 (13%), Positives = 128/397 (32%), Gaps = 79/397 (19%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + IK L+I+ +R ++ L + F + VG+NG GKT I+ + L + + +S Sbjct: 1 MYIKKLSITGYRCFSELFEINFRKGLNVIVGENGAGKTAIINSFRQLFIDTESGSYNVSS 60 Query: 61 Y------ADV----------TRIGSPSFFSTFARVEGMEGLADISIKLETRD----DRSV 100 + + A ++ + + ++ + LE + R Sbjct: 61 DDFNKPFKEASIAADSFKIKVEFDNLENAEPIAFLQWSDAVNNVILNLEVLNKELRGRFK 120 Query: 101 RCLQINDVVIRVVD-ELNKHLRISWLVP---SMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 + + D EL + +L P + ++ +G Sbjct: 121 KSFWGGNSKASQFDVELFDKIHCIYLPPLRDAESKLVNG--------------------- 159 Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216 R +L++ + + +E + + + + I + LI +++ Sbjct: 160 -RQSRLSKLLKFIEADQLKACKKAETKHPLEEKFKDFNQSLIDDKDSSIKKANKLIADHL 218 Query: 217 QKENFPHIKLSLTGFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 I + + +F + F + E F + + + + Sbjct: 219 ----LEAIGQNFSQSTHIQFVENEFSKIVENLRLIFFPKITTAEADQFRDLCQNS----L 270 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 Y + ++ + LA L + +LL++E AHL + L Sbjct: 271 GYNN--------------LLYIASILAELTLTKEES-LYRLLLIEEPEAHLHPQLQVRLL 315 Query: 336 RIVT----DIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 + + Q+ +T T +V S + K + ++ Sbjct: 316 DHLETVANEHNVQVIVT-THSTVLASSVKLDKIIHLT 351 >gi|303233285|ref|ZP_07319956.1| chromosome segregation protein SMC [Atopobium vaginae PB189-T1-4] gi|302480585|gb|EFL43674.1| chromosome segregation protein SMC [Atopobium vaginae PB189-T1-4] Length = 1203 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 21/178 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + + L + F+++A +VFD ++ VG NG GK+NI +AI ++ + R + Sbjct: 1 MYLASLTLKGFKSFADKTSIVFDPGLSVIVGPNGSGKSNISDAILWVLGEKSPKILRGQA 60 Query: 61 YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS + V + D ++ ++ R+ R L IN+ R Sbjct: 61 MEDVIFAGSTKRSAVSMCEVCLVLNNDDHTLPIDFREVAITRRLYRSGENEYLINNSPAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161 + D L K +D I + +RR+ ++ R R+++ + Sbjct: 121 LRDIIDILHDSGLGKDTHSIISQGKLDAILASKPEDRRQLIEEAAGIAKHRRRKQLAE 178 >gi|307129197|ref|YP_003881213.1| hypothetical protein Dda3937_01331 [Dickeya dadantii 3937] gi|306526726|gb|ADM96656.1| hypothetical protein Dda3937_01331 [Dickeya dadantii 3937] Length = 393 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 55/386 (14%), Positives = 128/386 (33%), Gaps = 56/386 (14%) Query: 3 NRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + + IK + ++ F ++ ++ + A + VG NG GK+N+LEAI L R A Sbjct: 6 SDM-IKSIQLTNFLSFGASTQPIELKA-LNVIVGPNGSGKSNLLEAIELL------RNAP 57 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + + +G +G ++ + + + L+ E+ + Sbjct: 58 DK-LITPIRDGGGVSDWLWKGGQGKPTATLNAVFTNPKGPQSLR----YQLSFTEVAQRF 112 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + +RI + + +P + + +N+ D Sbjct: 113 EMV-----DERIENEHPAD---------GHPEPYFYYHFNNARPTLNVKNKKRALQLEDI 158 Query: 181 SWCSSIEAQ------------MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 SI AQ +A+ +I + R + H++ + Sbjct: 159 DLEKSILAQRRDPDQYPEITYLAQELARIRLYREWSFGRYTPPRQPQKADLPNDHLESTS 218 Query: 229 T--GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIA 285 T G + + + +K+ K L D + + + + + + I Sbjct: 219 TNLGLVLNRLRRDPL-VKQRLLKALQALY--DGIDDYDVQIEGGTVQVFFHEGRFTIPAT 275 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GS 343 S G + + + L H P++ L+E L D L ++ + + Sbjct: 276 RLSDGTLRYLCLLAVLCH-------PNPPPLICLEEPELGLHPDVLPTLGALLKEASNRT 328 Query: 344 QIFMTGTDKSVFDSLNETAKFMRISN 369 Q+ +T + D++++ + ++ Sbjct: 329 QLIVTTHSDVLVDAMSDQPDAVLVAE 354 >gi|260887877|ref|ZP_05899140.1| putative cell division protein Smc [Selenomonas sputigena ATCC 35185] gi|330838742|ref|YP_004413322.1| chromosome segregation protein SMC [Selenomonas sputigena ATCC 35185] gi|260862383|gb|EEX76883.1| putative cell division protein Smc [Selenomonas sputigena ATCC 35185] gi|329746506|gb|AEB99862.1| chromosome segregation protein SMC [Selenomonas sputigena ATCC 35185] Length = 1181 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 93/291 (31%), Gaps = 43/291 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L F+++A + + F A T VG NG GK+N+ +A+ ++ R R + Sbjct: 1 MQLKRLEAYGFKSFADKIEIEFHAGVTAIVGPNGSGKSNVTDAVRWVLGEQNVRALRGSK 60 Query: 61 YADVTRIGSP-------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRV 112 D+ GS + S F EG + + + R RS IN R+ Sbjct: 61 AEDIIFTGSATRRAMGVAEVSLFFENEGDMPVDYREVVVTRRLFRSGESEFFINKSRCRL 120 Query: 113 VDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 D L + +D I + ERR + + +R R + R Sbjct: 121 KDISNLFADTGLGRDGMSVIGQNRIDEILNSKPEERRLYFEETAGITK--YRNRKRESMR 178 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-------RVEMINAL--------- 208 + L +AE K R + L Sbjct: 179 KLEDMQGNLVRVSDIMQEIEGQLEPLAESAEKTRRHDDLQTVYRRCALTELFQREGQLKK 238 Query: 209 -----SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 + I + ++ L + DQ+ L+E+ ++ Sbjct: 239 ERADSAGKIEAMRDEALAAETQVRLLDVKKEELDQAILVLEEKLQEQAEKN 289 >gi|255100266|ref|ZP_05329243.1| chromosome partition protein [Clostridium difficile QCD-63q42] Length = 1184 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 35/269 (13%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++ ++F T VG NG GK+NI +A+ L + R Sbjct: 1 MYLKRLELKGFKSFPVKTDIIFKEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ ++ E ++ T R+ R +N+ R Sbjct: 61 LEDVIFAGTDTKKPMNYCEVALTIDNSENQLELDFTEVTIRRRAYRNGESEFFLNNKSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D I S + RR+ D ++ Sbjct: 121 LKDIKEVFLDTGIGKDGYSIIEQGKVDEILSNNPLSRRKVFDEACGISK-------YRYK 173 Query: 164 RLMRGRNRLLTE---GYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSS-LIMEYVQ 217 + RN T+ D + E Q+ L + +E+ L + + +++ Sbjct: 174 KQEAERNLSNTKENLERIDDVYIEI-ENQLKPLFNQQTKAKKYLEISEKLKTLEVNSFIR 232 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + +LS ++ +E+ Sbjct: 233 EIEGIEKELSEVNEHRNVIEKELNEKEEQ 261 >gi|322389959|ref|ZP_08063499.1| chromosome segregation protein SMC [Streptococcus parasanguinis ATCC 903] gi|321143395|gb|EFX38833.1| chromosome segregation protein SMC [Streptococcus parasanguinis ATCC 903] Length = 1178 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 30/276 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYACVTVVLDNQDGFIQQAGKEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + + R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--FKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + L +E Q+ L + +AR L V + Sbjct: 179 TKLNQTQENLDRL---EDILYELEGQIQPLEKQATVARR----FLELDQERQVLLLDVLV 231 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 ++ LT L K DQ A++E+ A + ++ Sbjct: 232 AQVDLTKDLYEKVDQEEKAIQEQLASYYQRRQILEE 267 >gi|14590782|ref|NP_142852.1| chromosome segregation protein [Pyrococcus horikoshii OT3] gi|18202079|sp|O58687|RAD50_PYRHO RecName: Full=DNA double-strand break repair rad50 ATPase gi|3257342|dbj|BAA30025.1| 879aa long hypothetical purine NTPase [Pyrococcus horikoshii OT3] Length = 879 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 27/43 (62%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +KI+ + + FR++ + + F + +G NG GK+++L+AI Sbjct: 1 MKIERVIVQNFRSHKNSEIEFKPGINLIIGQNGAGKSSLLDAI 43 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 ++ L V Y + S GE+ + + LA + + G +L+LDE + LDE Sbjct: 771 NKVKLFVIYDGVERPLTFLSGGERIALGLAFRLAMSMYL---IGKVDLLILDEPTPFLDE 827 Query: 329 DKRNALFRIVT---DIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370 ++R L I+ SQ+ + D+ + D+ + +R+ Sbjct: 828 ERRRKLIEIMERHLRKISQVIIVSHDEELKDA-ADHVIRIRLEGG 871 >gi|257885679|ref|ZP_05665332.1| chromosome partition protein SMC [Enterococcus faecium 1,231,501] gi|257821535|gb|EEV48665.1| chromosome partition protein SMC [Enterococcus faecium 1,231,501] Length = 1193 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVVDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|324991497|gb|EGC23430.1| cell division protein Smc [Streptococcus sanguinis SK353] Length = 1178 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ A E + + + Y K + ++ L K + L ++ A L Sbjct: 239 EKLTQA-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQANLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 38.0 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|307314254|ref|ZP_07593862.1| SMC domain-containing protein [Escherichia coli W] gi|306906077|gb|EFN36596.1| SMC domain-containing protein [Escherichia coli W] gi|315062949|gb|ADT77276.1| hypothetical protein ECW_m3938 [Escherichia coli W] gi|323376458|gb|ADX48726.1| SMC domain-containing protein [Escherichia coli KO11] Length = 566 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 50/348 (14%), Positives = 120/348 (34%), Gaps = 36/348 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L + FRN+ + F++ T+ +G N VGK+N+L ++ L + S +++ Sbjct: 1 MEISSLKLKGFRNFKDAYINFNSN-TLIIGANDVGKSNMLHSLRMLLD----KSISDSEI 55 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 +E + I + ++ L I + + + + Sbjct: 56 ------EPNELDFHLENGNSCEEFEIIIHFKNINEDAVLSILKGNV---SDSGESFIKYF 106 Query: 125 LVPSMD--RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 S ++F G S+E + I+ R+ + ++ + + R L + Sbjct: 107 AQKSDLSYKLFIGDSLE-------SLQEINSRYYLKFVNLKYIQSQR-DLERFIRKEKRQ 158 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 I Q L ++ +SS + K + +L + + Sbjct: 159 LLKIAQQ--SLNSDEREEDDYLLGEISSDLQLINDKIS----QLIYVERATKEVNDELKK 212 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 L Y++ + + I +L + + G G +L+ ++ A Sbjct: 213 LAHHYSE-----YSVQLDTGAIGINDFIDNLQLGANTNGSNVMLGGDGRNNQILLALWKA 267 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTG 349 + + +++E AHL ++ L ++ ++ Q ++ Sbjct: 268 KSIKEHDVDNEVIFYVIEEPEAHLHPHQQRKLADYLIAELPGQTIISS 315 >gi|163784336|ref|ZP_02179239.1| hypothetical protein HG1285_04758 [Hydrogenivirga sp. 128-5-R1-1] gi|159880397|gb|EDP73998.1| hypothetical protein HG1285_04758 [Hydrogenivirga sp. 128-5-R1-1] Length = 666 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 106/283 (37%), Gaps = 37/283 (13%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASY 61 I +N+ F++Y L + VG NG GK+NI ++I F L+ + R Sbjct: 6 IDRINVYGFKSYGLRKLSIPIGDGFVGIVGPNGSGKSNIGDSIVFALGLATAKSMRALKL 65 Query: 62 ADVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDE 115 +D+ + + R EG L + + + + + S + +IN + + Sbjct: 66 SDLIFSSKGKSAEFAEVEVIFRNEGAFPLNNEEVSIYRKVEHSGKSTYKINGRPAKQYEV 125 Query: 116 --------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 + K + + ERR + + + D+E Sbjct: 126 EELLTAAGIPKQGYNIVTQGDIFKFIKMTPSERRDLISEIAG---------ITDYE---E 173 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 + + L + ++ A++ VK N+ R+E + E +K F K+ Sbjct: 174 RKEKALKDLEETEEKLTA--AKLVLKEVKTNLKRLEEERENALKAKEIEEKIAFLEEKIK 231 Query: 228 --LTGFLDGKFDQSFCALK--EEYAKKLFDGRKMDSMSRRTLI 266 FL + +++ L+ E+ ++L++ +++ ++ LI Sbjct: 232 GVKLYFLQNEEEKTVKDLEEVEQKIQELYNQKELSIQKQKELI 274 >gi|228902692|ref|ZP_04066839.1| DNA repair protein recN [Bacillus thuringiensis IBL 4222] gi|228856879|gb|EEN01392.1| DNA repair protein recN [Bacillus thuringiensis IBL 4222] Length = 583 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 116 KLVTLSILKEIGKSLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|228960442|ref|ZP_04122093.1| DNA repair protein recN [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047870|ref|ZP_04193446.1| DNA repair protein recN [Bacillus cereus AH676] gi|229111649|ref|ZP_04241199.1| DNA repair protein recN [Bacillus cereus Rock1-15] gi|229146749|ref|ZP_04275114.1| DNA repair protein recN [Bacillus cereus BDRD-ST24] gi|228636577|gb|EEK93042.1| DNA repair protein recN [Bacillus cereus BDRD-ST24] gi|228671784|gb|EEL27078.1| DNA repair protein recN [Bacillus cereus Rock1-15] gi|228723327|gb|EEL74696.1| DNA repair protein recN [Bacillus cereus AH676] gi|228799206|gb|EEM46172.1| DNA repair protein recN [Bacillus thuringiensis serovar pakistani str. T13001] Length = 600 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270 >gi|229192386|ref|ZP_04319349.1| DNA repair protein recN [Bacillus cereus ATCC 10876] gi|228590963|gb|EEK48819.1| DNA repair protein recN [Bacillus cereus ATCC 10876] Length = 600 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270 >gi|229157773|ref|ZP_04285848.1| DNA repair protein recN [Bacillus cereus ATCC 4342] gi|228625730|gb|EEK82482.1| DNA repair protein recN [Bacillus cereus ATCC 4342] Length = 583 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ DR+V +D ++ Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ + +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENDLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|206971339|ref|ZP_03232290.1| DNA repair protein RecN [Bacillus cereus AH1134] gi|229071681|ref|ZP_04204897.1| DNA repair protein recN [Bacillus cereus F65185] gi|229081433|ref|ZP_04213933.1| DNA repair protein recN [Bacillus cereus Rock4-2] gi|229180454|ref|ZP_04307796.1| DNA repair protein recN [Bacillus cereus 172560W] gi|206734111|gb|EDZ51282.1| DNA repair protein RecN [Bacillus cereus AH1134] gi|228602878|gb|EEK60357.1| DNA repair protein recN [Bacillus cereus 172560W] gi|228701848|gb|EEL54334.1| DNA repair protein recN [Bacillus cereus Rock4-2] gi|228711412|gb|EEL63371.1| DNA repair protein recN [Bacillus cereus F65185] Length = 600 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270 >gi|75761081|ref|ZP_00741078.1| DNA repair protein recN [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491423|gb|EAO54642.1| DNA repair protein recN [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 600 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 133 KLVTLSILKEIGKSLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270 >gi|228980860|ref|ZP_04141164.1| DNA repair protein recN [Bacillus thuringiensis Bt407] gi|228778796|gb|EEM27059.1| DNA repair protein recN [Bacillus thuringiensis Bt407] Length = 583 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|218899338|ref|YP_002447749.1| DNA repair protein RecN [Bacillus cereus G9842] gi|218543795|gb|ACK96189.1| DNA repair protein RecN [Bacillus cereus G9842] Length = 579 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 57 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 112 KLVTLSILKEIGKSLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 167 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 209 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249 >gi|28375557|emb|CAD66602.1| SMC protein [Pyrococcus furiosus] Length = 1177 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 33/253 (13%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 I+ L + F++Y + + F T VG NG GK+NI +AI F+ G R + Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63 Query: 62 ADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRVV 113 +D+ GS + +A V D ++ + R + + Sbjct: 64 SDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATR 123 Query: 114 DELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 E+ L + + P I +ERR +D + + E+ Sbjct: 124 SEILDILTAAMISPDGYNIVLQGDITKFIKMSPLERRLLIDDISGIAEYD-----SKKEK 178 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQKENFP 222 + L + + + + ++ + K+ R + + L + + Sbjct: 179 ALEE----LKQAEENLARVDLLIKEVKKQLDKLEKERNDALRYLDLKDKLEKAKVSLLLG 234 Query: 223 HIKLSLTGFLDGK 235 IK+ T +G+ Sbjct: 235 EIKILETQIKEGE 247 Score = 36.0 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 8/73 (10%) Query: 278 CDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 K + S GE+ + + A AP L DEI AHLD+ + Sbjct: 1059 AGKDVKRIEAMSGGEKALTALAFVFA-----IQKFKPAPFYLFDEIDAHLDDANVKRVAD 1113 Query: 337 IVTD--IGSQIFM 347 ++ + SQ + Sbjct: 1114 LIKESSKESQFIV 1126 >gi|17933343|gb|AAL48252.1|AF451891_2 RecN [Lactobacillus plantarum subsp. plantarum] Length = 420 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 70/412 (16%), Positives = 135/412 (32%), Gaps = 71/412 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I+ F L + F+A T+ G+ G GK+ I++A+ L+ GRG A+ R Sbjct: 2 LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SAEFIR 56 Query: 67 IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIR-- 111 G+ + E AD ++ L+ +S R +IN +++ Sbjct: 57 TGADKAVLQGMFILPADGVTAQLLDEAGIEHADNTVILQREITKSGRNTCRINGMLVNTT 116 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-------RRRMIDFER 164 + ++ + + + + LD A + R R Sbjct: 117 TLKQIGETIVDIHGQNEHQELMQ--PEKHLGLLDEFATAKIRKLKQRYQQQYDRYQQLNR 174 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 +R +N E + Q+ E+ E ++ Q N + Sbjct: 175 ELRQKNANEKEWAQR---LDMLNFQVDEIAAAQVKVGEEASLTAERDRLDNYQMINQA-L 230 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS------------- 271 + S T G+ + L +D + + Sbjct: 231 QQSYTLLAAGEETTGAVDMVGTAMNALEPIANLDPAFNEITVNVKNAFYGLQDAAGQISN 290 Query: 272 --DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD---EISAHL 326 DL + I EQ++ ++ + G + +LD +I+A L Sbjct: 291 QLDLQEFDEGRLDEI------EQRLDVLA-------QLKRKYGDSEQQILDYYQKIAAEL 337 Query: 327 -----DEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 E+ L + V D+ Q+ TG +++ D AK ++ HQ L Sbjct: 338 SKMTDSEENSEDLAQRVADLKQQLLTTG--EALSDKRRAAAKVLQRQIHQEL 387 >gi|270290358|ref|ZP_06196583.1| chromosome segregation protein SMC [Pediococcus acidilactici 7_4] gi|270281139|gb|EFA26972.1| chromosome segregation protein SMC [Pediococcus acidilactici 7_4] Length = 1184 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 99/297 (33%), Gaps = 31/297 (10%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K++ + IS F+++A ++ F T VG NG GK+NI+EAI ++ + + R Sbjct: 1 MKLRTIEISGFKSFADHTKIDFKDGITGIVGPNGSGKSNIIEAIRWVMGETSAKSLRGGK 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 DV G+ F ++ ++ IS +L + ++N Sbjct: 61 MPDVIFSGTQKRKPLSRAAVSIVFDNSDHFLDSKFDEVMISRRLFRNGESQ---YELNHQ 117 Query: 109 VIRVVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 R+ D LN + ++ IF+ +RR ++ ++ +++ Sbjct: 118 ECRLKDILNLFIDTGLGRESLSVISQGKIEEIFNSKPEDRRAIIEEAAGVLE--YKQDKR 175 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 E + + L + E + ++ L + + Sbjct: 176 RAESELEKTSGYLERVNDLIVELQKQVEPLEEQAA-VAKDYLQQKKRFDRLEQTRLVRTI 234 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 + L + + Q+ E +L R + + DL + Sbjct: 235 TRNSDLQKRWAKEAEVKQTEAHQLENKLNELVKQRDR-LKEQVNQQSKQKDDLQAEL 290 >gi|228954460|ref|ZP_04116485.1| DNA repair protein recN [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805117|gb|EEM51711.1| DNA repair protein recN [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 600 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270 >gi|229129454|ref|ZP_04258425.1| DNA repair protein recN [Bacillus cereus BDRD-Cer4] gi|229152376|ref|ZP_04280568.1| DNA repair protein recN [Bacillus cereus m1550] gi|228630984|gb|EEK87621.1| DNA repair protein recN [Bacillus cereus m1550] gi|228654059|gb|EEL09926.1| DNA repair protein recN [Bacillus cereus BDRD-Cer4] Length = 600 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270 >gi|255306206|ref|ZP_05350378.1| chromosome partition protein [Clostridium difficile ATCC 43255] Length = 1184 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 35/269 (13%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++ ++F T VG NG GK+NI +A+ L + R Sbjct: 1 MYLKRLELKGFKSFPVKTDIIFKEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ ++ E ++ T R+ R +N+ R Sbjct: 61 LEDVIFAGTDTKKPMNYCEVALTIDNSENQLELDFTEVTIRRRAYRNGESEFFLNNKSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D I S + RR+ D ++ Sbjct: 121 LKDIKEVFLDTGIGKDGYSIIEQGKVDEILSNNPLSRRKVFDEACGISK-------YRYK 173 Query: 164 RLMRGRNRLLTE---GYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSS-LIMEYVQ 217 + RN T+ D + E Q+ L + +E+ L + + +++ Sbjct: 174 KQEAERNLSNTKENLERIDDVYIEI-ENQLKPLFNQQTKAKKYLEISEKLKTLEVNSFIR 232 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + +LS ++ +E+ Sbjct: 233 EIEGIEKELSEVNEHRKVIEKELNEKEEQ 261 >gi|126698846|ref|YP_001087743.1| chromosome partition protein [Clostridium difficile 630] gi|115250283|emb|CAJ68105.1| Structural maintenance chromosome protein SMC [Clostridium difficile] Length = 1184 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 35/269 (13%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++ ++F T VG NG GK+NI +A+ L + R Sbjct: 1 MYLKRLELKGFKSFPVKTDIIFKEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ ++ E ++ T R+ R +N+ R Sbjct: 61 LEDVIFAGTDTKKPMNYCEVALTIDNSENQLELDFTEVTIRRRAYRNGESEFFLNNKSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D I S + RR+ D ++ Sbjct: 121 LKDIKEVFLDTGIGKDGYSIIEQGKVDEILSNNPLSRRKVFDEACGISK-------YRYK 173 Query: 164 RLMRGRNRLLTE---GYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSS-LIMEYVQ 217 + RN T+ D + E Q+ L + +E+ L + + +++ Sbjct: 174 KQEAERNLSNTKENLERIDDVYIEI-ENQLKPLFNQQTKAKKYLEISEKLKTLEVNSFIR 232 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + +LS ++ +E+ Sbjct: 233 EIEGIEKELSEVNEHRKVIEKELNEKEEQ 261 >gi|71032011|ref|XP_765647.1| hypothetical protein [Theileria parva strain Muguga] gi|68352604|gb|EAN33364.1| hypothetical protein TP01_0120 [Theileria parva] Length = 179 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 KI + + F N+A L + G NG GK+ I++AI+ G ++ Sbjct: 35 KIIKVTLFNFLNHAHLTFSCSPYLNLIFGRNGQGKSAIVQAIALCFGATGHSVGRDTNLN 94 Query: 66 RIGSPSFFS 74 R Sbjct: 95 RYIKDYHLK 103 >gi|47570401|ref|ZP_00241040.1| DNA repair protein RecN [Bacillus cereus G9241] gi|47552925|gb|EAL11337.1| DNA repair protein RecN [Bacillus cereus G9241] Length = 579 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 57 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ DR+V +D ++ Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 167 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ + +L ++ F++ + AL + Y DG+ +D++ Sbjct: 209 DEENDLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249 >gi|332358949|gb|EGJ36770.1| cell division protein Smc [Streptococcus sanguinis SK49] Length = 1178 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ A E + + + Y K + ++ L K + L ++ A L Sbjct: 239 EKLIKA-EEDLTNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 >gi|322385040|ref|ZP_08058690.1| cell division protein Smc [Streptococcus cristatus ATCC 51100] gi|321270950|gb|EFX53860.1| cell division protein Smc [Streptococcus cristatus ATCC 51100] Length = 1178 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 55/291 (18%), Positives = 108/291 (37%), Gaps = 37/291 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTENRKPLNYASVVVVLDNQDQFIKQAGKEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGV---KINIARVE-MINALSSLIME- 214 + L Y S +E Q AE +++ R E ++ L + I Sbjct: 179 SKLAQTQDNLDRLEDIIYELDSQVKPLEKQ-AETAKRFLELDQERQELYLDVLVAQIKAN 237 Query: 215 ----YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + + IK L + + + + + ++ + R D + Sbjct: 238 KTDLTAAEADLESIKQELAAYYTKRDELERENQEIKVKRQEVNQRLSDDQA 288 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 26/197 (13%) Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 R R L + +E + LG ++ + + + + LS Sbjct: 953 QRARSLENLAAAEAQVKDLEKAIRALGPV----NLDAVEQFEEVSSRLNFLNSQRNDVLS 1008 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-------- 279 L ++ +KE + R+ ++ + G +DLI+ D Sbjct: 1009 AKNLLLETIEEMNDEVKERFQTTFEAIRESFKLTFSQMFGGGSADLILTEGDLLTAGVEI 1068 Query: 280 -------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1069 SVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEANVK 1123 Query: 333 ALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1124 RFGDYLNRFDKESQFIV 1140 >gi|228941335|ref|ZP_04103887.1| DNA repair protein recN [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974267|ref|ZP_04134836.1| DNA repair protein recN [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785317|gb|EEM33327.1| DNA repair protein recN [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818261|gb|EEM64334.1| DNA repair protein recN [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 600 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270 >gi|218231559|ref|YP_002368977.1| DNA repair protein RecN [Bacillus cereus B4264] gi|218159516|gb|ACK59508.1| DNA repair protein RecN [Bacillus cereus B4264] Length = 579 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 57 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 112 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 167 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 209 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249 >gi|328848556|gb|EGF97764.1| hypothetical protein MELLADRAFT_84477 [Melampsora larici-populina 98AG31] Length = 1233 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 52/300 (17%), Positives = 101/300 (33%), Gaps = 42/300 (14%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------- 56 + + + I F++Y + + T +G NG GK+N+++A S L F Sbjct: 1 MPLHSIEIVNFKSYKGTQTIGPFKNFTAVIGPNGAGKSNLMDAQSHLLVRISFVLGVRSG 60 Query: 57 --RRASYADVTRIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104 R D+ G + + S + ++S Sbjct: 61 QLRSTQLRDLIYKGGDREDENQAPKKAAVTAIYIDHKTGDQHRFSRTITVASEKSGSSAY 120 Query: 105 -INDVVIR---------VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-- 152 IND V++ D L K ++ + S + +D++ ++D Sbjct: 121 SINDKVVKWEEYQSTLEQYDILVKAKNFLVFQGDVEAVASQNPNALSKLIDQISGSLDLA 180 Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV--KINIARVEMINALSS 210 + +R + + N L + + + Q AE+ ++ R + I L Sbjct: 181 AEYEKRRLAHIDASKQSNDQLIKRRVINGEIKDFKQQKAEMEEFDRLCEERDQEIIHLLL 240 Query: 211 L---IMEYVQKENFPHIKLSLTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 +E+ +N IKL G D +FDQ ++EY + D K + + Sbjct: 241 WKLFHIEHSINQNSEAIKLLNDGLADLQAESHEFDQHVTQARKEYTQATRDVIKAERSLK 300 >gi|331269657|ref|YP_004396149.1| chromosome segregation protein SMC [Clostridium botulinum BKT015925] gi|329126207|gb|AEB76152.1| chromosome segregation protein SMC [Clostridium botulinum BKT015925] Length = 1184 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L I F+++A LVF T VG NG GK+NIL+A+ ++ + R Sbjct: 1 MFLKSLEIRGFKSFADKTELVFKKGITAIVGPNGSGKSNILDAVKWVLGEQSIKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ +G I + + R RS IN+ R Sbjct: 61 MQDVIFSGTEFRKPVGLAQVTLILDNSDGELPIEYSEVTIMRRLFRSGESEYYINNTKCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + K ++ + SG ERR L+ Sbjct: 121 LKDIQELFMDTGIGKEGYSIIGQGKIEALLSGKPEERRSLLE 162 Score = 36.8 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 32/185 (17%) Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + +A+LGV A + + QKE+ K L + D+ Sbjct: 977 IEIYKRDIAKLGVVNLGAIQQYKELMEKYTFMKEQKEDLIQAKEELLNVVKEMTDKMKTV 1036 Query: 243 LKEEYAKKLFDGRK---MDSMSRRTLIGPHRSDLIVDYCD---------------KAITI 284 E + KL + + ++DLI++ D K I Sbjct: 1037 FHENF-NKLRENFSETFRELFKG------GKADLILESGDELTSNIEINVQPPGKKLQNI 1089 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--G 342 S GE+ + + + A ++ P +LDEI A LD+ + + Sbjct: 1090 NLMSGGEKGLSAIALLFAILKM-----KPTPFCILDEIEAALDDSNVSRYSEFLRKFSSN 1144 Query: 343 SQIFM 347 +Q + Sbjct: 1145 TQFII 1149 >gi|311029997|ref|ZP_07708087.1| chromosome segregation SMC protein [Bacillus sp. m3-13] Length = 1188 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A + + F T VG NG GK+NI++AI L + R + Sbjct: 1 MYLKRLEVVGFKSFAEKISVDFVPGVTAVVGPNGSGKSNIIDAIRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSPS 71 D+ GS S Sbjct: 61 MEDIIFAGSDS 71 >gi|304384764|ref|ZP_07367110.1| cell division protein Smc [Pediococcus acidilactici DSM 20284] gi|304328958|gb|EFL96178.1| cell division protein Smc [Pediococcus acidilactici DSM 20284] Length = 1184 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 99/297 (33%), Gaps = 31/297 (10%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K++ + IS F+++A ++ F T VG NG GK+NI+EAI ++ + + R Sbjct: 1 MKLRTIEISGFKSFADHTKIDFKDGITGIVGPNGSGKSNIIEAIRWVMGETSAKSLRGGK 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 DV G+ F ++ ++ IS +L + ++N Sbjct: 61 MPDVIFSGTQKRKPLSRAAVSIVFDNSDHFLDSKFDEVMISRRLFRNGESQ---YELNHQ 117 Query: 109 VIRVVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 R+ D LN + ++ IF+ +RR ++ ++ +++ Sbjct: 118 ECRLKDILNLFIDTGLGRESLSVISQGKIEEIFNSKPEDRRAIIEEAAGVLE--YKQDKR 175 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 E + + L + E + ++ L + + Sbjct: 176 RAESELEKTSGYLERVNDLIVELQKQVEPLEEQAA-VAKDYLQQKKRFDRLEQTRLVRTI 234 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 + L + + Q+ E +L R + + DL + Sbjct: 235 TRNSDLQKRWAKEAEVKQTEAHQLENKLNELVKQRDR-LKEQVNQQSKQKDDLQAEL 290 >gi|301108950|ref|XP_002903556.1| structural maintenance of chromosomes protein, putative [Phytophthora infestans T30-4] gi|262097280|gb|EEY55332.1| structural maintenance of chromosomes protein, putative [Phytophthora infestans T30-4] Length = 251 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 7/108 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASYA 62 I+ + F + LR+ G+NG GK+ I+ AI G R + Sbjct: 79 IEEIYCENFMCHRKLRVTLSPHINFITGENGSGKSAIIAAIQIC-FGASARTTHRGKNIK 137 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDV 108 R G + +G + + + + + R ++ + Sbjct: 138 SFIRHGCDGNAFVRVTLRNDDGAGSDAFQADKYGKKIIVERLIRRDGS 185 >gi|228967215|ref|ZP_04128251.1| DNA repair protein recN [Bacillus thuringiensis serovar sotto str. T04001] gi|228792584|gb|EEM40150.1| DNA repair protein recN [Bacillus thuringiensis serovar sotto str. T04001] Length = 583 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ DR+V +D ++ Sbjct: 116 KLVTLSVLKEIGKSLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|21228296|ref|NP_634218.1| chromosome segregation protein [Methanosarcina mazei Go1] gi|49036449|sp|Q8PUY4|RAD50_METMA RecName: Full=DNA double-strand break repair rad50 ATPase gi|20906757|gb|AAM31890.1| DNA repair protein RAD50 [Methanosarcina mazei Go1] Length = 1070 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 87/268 (32%), Gaps = 34/268 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-----RGFRRA 59 +K+K L I R+Y L F+ T+ G NG GK+++LEA G + F Sbjct: 1 MKLKNLYIENIRSYKKLDFTFEDGVTVISGVNGSGKSSLLEACFMGLFGSKILSKDF--- 57 Query: 60 SYADVTRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCL--------QINDVVI 110 AD+ G+ S G E L + + + + + + I D Sbjct: 58 VLADMIFKGAESAKIHLGFEHLGREYLIEQAFRYSLKSENASNSRCVLFADGENIVDQAT 117 Query: 111 RVVDELNKHLRI---------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161 R +E+ L + +D + + +R+R +D ++ R Sbjct: 118 RTYEEVCALLNMDEEAYRNCAYIRQGEIDVLINAKPRDRQRMIDDLLQLGKLEEYRERAG 177 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + + R L +S E + E + +N L + E Sbjct: 178 YAKTAVRR---LERDAKNSFLGVKAEIEGIESTEPV-----AAVNRLRQKVKETDAILEE 229 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + K G+ D +E + Sbjct: 230 LNKKKEFAAARKGELDLRIAEYRERLQE 257 >gi|293365562|ref|ZP_06612271.1| cell division protein Smc [Streptococcus oralis ATCC 35037] gi|307703517|ref|ZP_07640459.1| chromosome segregation protein SMC [Streptococcus oralis ATCC 35037] gi|291315930|gb|EFE56374.1| cell division protein Smc [Streptococcus oralis ATCC 35037] gi|307622924|gb|EFO01919.1| chromosome segregation protein SMC [Streptococcus oralis ATCC 35037] Length = 1179 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 105/283 (37%), Gaps = 37/283 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A IK+E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNEDGFIKDAGQIIKVERHIYRSGDSEYRIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----------EMINALSSLIM 213 ++ L + Q+ L + AR ++ L + I Sbjct: 179 SKLQQTQDNLDRL---EDIIYELNNQIKPLAKQAENARKFLDLDGQRKTIYLDVLVAQIK 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 E + +L+ L + Q L+EE + L R+ Sbjct: 236 ENKAELELTEEELTQVQELLTSYYQKREELEEE-NQTLKKKRQ 277 >gi|229047535|ref|ZP_04193125.1| Chromosome partition protein smc [Bacillus cereus AH676] gi|229111319|ref|ZP_04240872.1| Chromosome partition protein smc [Bacillus cereus Rock1-15] gi|228672095|gb|EEL27386.1| Chromosome partition protein smc [Bacillus cereus Rock1-15] gi|228723782|gb|EEL75137.1| Chromosome partition protein smc [Bacillus cereus AH676] Length = 1189 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 106/333 (31%), Gaps = 59/333 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDK 280 KL R+ + T LIV+ +K Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEK 331 >gi|284052082|ref|ZP_06382292.1| SMC domain-containing protein [Arthrospira platensis str. Paraca] gi|78773867|gb|ABB51217.1| ATP-binding protein [Arthrospira platensis] Length = 402 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 25/43 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 ++I L +S FR + F + VG NGVGK+++L+A+ Sbjct: 1 MQINQLKLSNFRGFEQAEFEFQPGMNLIVGINGVGKSSVLDAL 43 >gi|169841780|ref|ZP_02874889.1| chromosome segregation protein SMC [candidate division TM7 single-cell isolate TM7a] Length = 55 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 10/63 (15%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + +K L ++ F+++A+ + FD+ T VG NG GK+NIL+AI GFRRA + Sbjct: 1 MYLKALELTGFKSFANKTVEEFDSGITSIVGPNGSGKSNILDAIC------GFRRA---E 51 Query: 64 VTR 66 + + Sbjct: 52 LIK 54 >gi|254435753|ref|ZP_05049260.1| hypothetical protein NOC27_2816 [Nitrosococcus oceani AFC27] gi|207088864|gb|EDZ66136.1| hypothetical protein NOC27_2816 [Nitrosococcus oceani AFC27] Length = 168 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +KI L + FR Y+++ + FD + +G N VGK+ ILEA+ Sbjct: 1 MKISSLTLKNFRAYSNVFVKFDDNFNVIIGRNDVGKSTILEALEIF 46 >gi|304558200|gb|ADM40864.1| hypothetical protein ETAF_0742 [Edwardsiella tarda FL6-60] Length = 708 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL 50 + IK L+I FRN+ S +L F + VG+N GKTN+ EA+ + Sbjct: 1 MYIKNLSIRNFRNFQSTKLNFKKECVNTIVGENSSGKTNVFEAMRLI 47 >gi|295091754|emb|CBK77861.1| condensin subunit Smc [Clostridium cf. saccharolyticum K10] Length = 1195 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 22/191 (11%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I F+++A+ L F T VG NG GK+N+ +A+ ++ + R + Sbjct: 1 MYLKSIEIQGFKSFANKILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ F ++ + IS T R R +IN R Sbjct: 61 MQDVIFSGTEIRKPQGFAYVAITLDNSDHRLPISYDQVTVSRRLYRSGESEYRINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +DRI SG ERR D + + RR++I Sbjct: 121 LKDIQELFYDTGIGKEGYSIIGQGQIDRILSGRPEERRELFDEAAGIVKFK-RRKLIAQR 179 Query: 164 RLMRGRNRLLT 174 +LM L+ Sbjct: 180 KLMDEEQNLVR 190 >gi|302392423|ref|YP_003828243.1| chromosome segregation protein SMC [Acetohalobium arabaticum DSM 5501] gi|302204500|gb|ADL13178.1| chromosome segregation protein SMC [Acetohalobium arabaticum DSM 5501] Length = 1188 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++ +++ F+ T +G NG GK+NI +AI L + R + Sbjct: 1 MHLKKIEMHGFKSFAEEVKVEFEPNITAVLGPNGSGKSNIADAIRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV GS ++ G I + L R RS + IN+ V R Sbjct: 61 MEDVIFAGSSQRKPMGIAEVTLTLDNSNGQLPIDYNEVTLGRRVTRSGKSEYLINNSVCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|47940530|gb|AAH71750.1| SMC2 protein [Homo sapiens] Length = 356 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|312868408|ref|ZP_07728608.1| chromosome segregation protein SMC [Streptococcus parasanguinis F0405] gi|311096153|gb|EFQ54397.1| chromosome segregation protein SMC [Streptococcus parasanguinis F0405] Length = 1178 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 30/276 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYACVTVVLDNQDGFIQQAGKEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + + R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--FKTRRKETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + L +E Q+ L + +AR L V + Sbjct: 179 TKLNQTQENLDRL---EDILYELEGQIQPLEKQATVARR----FLELDQERQVLLLDVLV 231 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 ++ LT L K DQ A++E+ A + ++ Sbjct: 232 AQVDLTKDLYEKADQEEKAIQEQLASYYQRRQVLEE 267 >gi|289191877|ref|YP_003457818.1| SMC domain protein [Methanocaldococcus sp. FS406-22] gi|288938327|gb|ADC69082.1| SMC domain protein [Methanocaldococcus sp. FS406-22] Length = 1006 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 24/183 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRR--ASY 61 + +K + ++ F+++ + R+ FD +G+NG GK++I EA+ F G RR SY Sbjct: 1 MILKEIKMNNFKSHENTRITFDEGIIAIIGENGSGKSSIFEAVFFALFGADALRRMGLSY 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 +V G +E + E S + + + E+NK + Sbjct: 61 DEVITKGKK---VMSVELEFKINGVKYRVVREYDGRSSAKLYKNGKPYATTISEVNKAIN 117 Query: 122 ISWLVPSMD-------------RIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFE 163 V + + ER+ + +++ + + + +++ Sbjct: 118 EILGVDRDMFLNSIYIKQGEIANLLNLPPHERKELIGKLLGIDDFEKCYQKMKDVIDEYK 177 Query: 164 RLM 166 R + Sbjct: 178 RQL 180 Score = 43.4 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 D+ V + +TI + S GEQ V + + LA A + ++LDE + +LDE++R Sbjct: 901 DVKVHSPNGILTIDNLSGGEQIAVALSLRLAIANAL--VGNRVECIILDEPTVYLDENRR 958 Query: 332 NALFRI---VTDIGSQIFMT 348 L I + ++ + +T Sbjct: 959 AKLAEIFKKIDNVPQMVIIT 978 >gi|262037744|ref|ZP_06011186.1| chromosome segregation protein SMC [Leptotrichia goodfellowii F0264] gi|261748216|gb|EEY35613.1| chromosome segregation protein SMC [Leptotrichia goodfellowii F0264] Length = 1176 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 110/289 (38%), Gaps = 47/289 (16%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 + +K L ++ F+++A + F+ T VG NG GK+NIL+AI ++ + + R Sbjct: 1 MHLKALELAGFKSFADKTVVEFNRGITSIVGPNGSGKSNILDAILWVLGEQSYKNIRAKE 60 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLADI---SIKLETR-----------DDRSVR 101 +DV G + S +E +G DI IK+ R ++R R Sbjct: 61 SSDVIFSGGKNKKAKSMAEVSLIIENEDGYLDIDFSEIKITRRIYKSGENEYFINNRKAR 120 Query: 102 CLQIN--------DVVIRVVDELNKHLRISWLVP-SMDRIFSGLSMERRRFLDRMVFAID 152 IN + + RI P + I + +R +++ Sbjct: 121 LKDINNLFMDTGIGKQAYSIIGQGRVERIIGSNPRELKEIIEEAAGVKRAKVEKEESEKK 180 Query: 153 PRH----RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 + ++ E+ + R + L + + + KI++ R+ ++ Sbjct: 181 LKEVKSEIEKITYVEKDLETRVKYLKDEGMKARLYKTYTE-------KIDVHRLMILE-- 231 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 ++ + + ++ + K L +DG Q +K+E KL + R+ Sbjct: 232 YNINEKEIARKKYTSEKEELKSIIDGI--QENLEVKKENLGKLNEKREK 278 >gi|332158041|ref|YP_004423320.1| chromosome segregation protein smc1 [Pyrococcus sp. NA2] gi|331033504|gb|AEC51316.1| chromosome segregation protein smc1 [Pyrococcus sp. NA2] Length = 1178 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 31/224 (13%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 I+ L + F++Y + + F T VG NG GK+NI +AI F+ G R + Sbjct: 4 IEKLELKGFKSYGNRKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63 Query: 62 ADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRVV 113 +D+ GS + +A V D ++ + R + + Sbjct: 64 SDLIFAGSKSEGPAKYAEVTIYFNNEDRGFPIDEDEVVIKRRVYPDGRSHYWLNGKRATR 123 Query: 114 DELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 E+ L + + P I +ERR LD + + E+ Sbjct: 124 SEILDLLSSAMISPEGYNIILQGDITKFIKMSPIERRLILDDISGIAEYD-----AKKEK 178 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 ++ L + + + + ++ + K+ R + + L Sbjct: 179 ALQE----LKQAEENLARVDLLIREVKKQLDKLEKERNDALRYL 218 Score = 36.0 bits (82), Expect = 9.9, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 8/79 (10%) Query: 272 DLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 ++ K + S GE+ + + A AP L DEI AHLD+ Sbjct: 1053 EIEAKPAGKDVKRIEAMSGGEKALTALAFIFA-----IQKFKPAPFYLFDEIDAHLDDAN 1107 Query: 331 RNALFRIVTD--IGSQIFM 347 + ++ + SQ + Sbjct: 1108 VKRVADLIKESSKESQFIV 1126 >gi|222099796|ref|YP_002534364.1| DNA double-strand break repair rad50 ATPase [Thermotoga neapolitana DSM 4359] gi|221572186|gb|ACM22998.1| DNA double-strand break repair rad50 ATPase [Thermotoga neapolitana DSM 4359] Length = 853 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 105/286 (36%), Gaps = 40/286 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYAD 63 ++ + L F S+ + F+ TI G NG GK++I EAISF G G R + D Sbjct: 1 MRPERLVAKNFLGLKSVDINFEKGITIIEGPNGAGKSSIFEAISFALFGEGIRYGRNVYD 60 Query: 64 VTRIGSPS-FFSTFARVEGMEGLADISIKLETR---------------DDRSVRCLQIND 107 SP R E ++ ++E+ ++ + ++++D Sbjct: 61 YVNTESPERRAQLIFRFERGGKRYEVLREIESGVRKKHSAVLVEVLEEGKKARQAVKVDD 120 Query: 108 VVIRVVDELN---KHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 V ++ + L + + +P +D + E R + + D + Sbjct: 121 VRKKIEEILGVDSRTFTKTIFLPQGKIDELLKSTPGEISRIISDVFLDED-----ILKRL 175 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 E + + L + S E ++E+ ++ R+E + S ++ ++ Sbjct: 176 EDTLNKKMNELNQET------SGYERLLSEIISYLDRYRLEDLKKKLSDLLSEKKRLLDE 229 Query: 223 HIKL-----SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 KL L+ ++ + KE K L + +++ ++ Sbjct: 230 EEKLRGEEKRLSYLVE--RYREIVEKKERLKKLLQEKTRLEEEVKQ 273 >gi|322371770|ref|ZP_08046313.1| chromosome segregation protein [Haladaptatus paucihalophilus DX253] gi|320548655|gb|EFW90326.1| chromosome segregation protein [Haladaptatus paucihalophilus DX253] Length = 888 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K + + +S F+ Y L ++ T+ G NG GK+++LEA F G + DV Sbjct: 1 MKFERVRLSNFKCYEDADLALESGITVIHGLNGSGKSSLLEACFFALYGARALDRTLEDV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104 IG+ A VE A S + R + Q Sbjct: 61 VTIGAED-----AEVELWFTHAGGSYHIHRRIRATGESAQ 95 Score = 36.4 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 33/274 (12%) Query: 97 DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 DR R +I V + D ++ R++ +D + R D+ + R Sbjct: 586 DRRTRIERIQTVQEKKADAESELDRLAEKRSHLDEL---NDQRRENLSDKRARQSELRDA 642 Query: 157 RRMIDFERL--MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM--INALSSLI 212 ER + R E D SS+ Q +L +I R E+ + L Sbjct: 643 YDESAVERARDNKQRAENYLEQVADK--LSSLREQRDDLIDRIGAVRGEIEELEELRDRR 700 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM------------DSM 260 + ++ + L + L+ E ++ + DS Sbjct: 701 DDIEERVSA----LESLYDEAADLQSMYGDLRAELRQRNVVSLERMLNEVFDLIYQNDSY 756 Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN-TTGFAPI--L 317 +R L G +R + + + S GE+ + + + A RL++ G AP+ L Sbjct: 757 ARIALDGEYRLTIYQK-DGEPLDPEQLSGGERALFNLSLRCAIYRLLAEGIEGSAPMPPL 815 Query: 318 LLDEISAHLDEDKRNALFRIVTDIG----SQIFM 347 +LDE + LD + L +V + QI + Sbjct: 816 ILDEPTVFLDSGHVSQLVELVESMRELGVEQIIV 849 >gi|228910010|ref|ZP_04073830.1| DNA repair protein recN [Bacillus thuringiensis IBL 200] gi|228849527|gb|EEM94361.1| DNA repair protein recN [Bacillus thuringiensis IBL 200] Length = 600 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGKGLDNVR 270 >gi|256827010|ref|YP_003150969.1| chromosome segregation protein SMC [Cryptobacterium curtum DSM 15641] gi|256583153|gb|ACU94287.1| chromosome segregation protein SMC [Cryptobacterium curtum DSM 15641] Length = 1184 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 21/171 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A L F+ T VG NG GK+N+ +A+ L + R + Sbjct: 1 MHLKSLVLKGFKSFADRSVLSFEPGITAVVGPNGSGKSNVSDAVLWVLGERNAKNLRGQA 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS + A VE + D ++ +E + R + IN + R Sbjct: 61 MEDVIFAGSAVRKPVSVAEVELILDNTDGTLPVEYSEVSIARRMYRSGESEYLINGTIAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 +D L + I +RR ++ + + Sbjct: 121 RMDVLDILHDSGLGTGTHSIISQGHLASILQSRPEDRRALIEEAAGVLKHK 171 >gi|228987365|ref|ZP_04147485.1| DNA repair protein recN [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772337|gb|EEM20783.1| DNA repair protein recN [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 600 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ DR+V +D ++ Sbjct: 133 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ + +L ++ F++ + AL + Y DG+ +D++ Sbjct: 230 DEENDLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270 >gi|332638234|ref|ZP_08417097.1| Barmotin [Weissella cibaria KACC 11862] Length = 1185 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 108/288 (37%), Gaps = 32/288 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +K+K L IS F+++A ++ F T VG NG GK+NI+EAI ++ +G R Sbjct: 1 MKLKTLEISGFKSFADRTKIEFMPGITGVVGPNGSGKSNIIEAIRWVMGEQSAKGLRGDK 60 Query: 61 YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 +DV G S A V D + + + R R L QIN +R Sbjct: 61 MSDVIFGGTSQRAPLNRAEVSITFDNTDRYLNSDYSEIRITRALYRNGDSKYQINGTTVR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162 + ++++ S L I S ERR ++ + +++ Sbjct: 121 -LKDIHELFMDSGLGRESFSIISQGRVESIFSAKPEERRSIIEDVAGVYK--YKQNKDKA 177 Query: 163 ERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMIN--ALSSLIMEY 215 E+ + NR+ Y + + + Q A+ + AR + ++ L + ++ Sbjct: 178 EKELTGVQDNLNRVQDILYELENRVTPLAEQSAKAQTYLTTKARFDQLDQSRLVLELTDW 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 ++ +LS + +S + A + + ++ Sbjct: 238 YTEQADIKAQLSRAEDENETHAESVKTHTDALAAMKQARTEAEEKQQQ 285 >gi|325191196|emb|CCA25982.1| structural maintenance of chromosomes protein 6 puta [Albugo laibachii Nc14] Length = 1156 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 3/84 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRG-FRRASYAD 63 I+ + F + LR+ G+NG GK+ I+ AI + R R S + Sbjct: 97 IEEIYCENFMCHQKLRVELSPHINFITGENGSGKSAIIAAIQICLGASARSTHRGKSLKN 156 Query: 64 VTRIGSPSFFSTFARVEGMEGLAD 87 + R G + D Sbjct: 157 LIRHGHDGHALLRVTLRNDGSSGD 180 >gi|126658256|ref|ZP_01729406.1| hypothetical protein CY0110_12692 [Cyanothece sp. CCY0110] gi|126620405|gb|EAZ91124.1| hypothetical protein CY0110_12692 [Cyanothece sp. CCY0110] Length = 390 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 55/387 (14%), Positives = 129/387 (33%), Gaps = 50/387 (12%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----- 56 N++ I+ L+I +R + + AQ + VGDN GKT+ L+AI L + + Sbjct: 9 VNQM-IRDLSIKNYRCFEDFYVDGLAQVNLIVGDNNSGKTSFLKAICLL-LDKSYYYKLH 66 Query: 57 -RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 + + D+ ++ F S + + + + +IN + D Sbjct: 67 NKTTTLIDLLKL-RKEFLSLALEDKKKSNIVKVYLIPHL-----FYQYKINKTIEIFCDN 120 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + ++ E+ +F + + + + +F++ + + Sbjct: 121 --DFFSKVEITN--LKL------EKSKFKNIHLLTTEDECFKINYEFKKSNTENKNIRGQ 170 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 +++ + + + E + R+ I L Y F + ++ Sbjct: 171 AFYEINQQGTYIQETPENANQ---TRLNGIERLI----MYTPDSIFMPLTYDYLDDVEKN 223 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 +D KE+ + D + + + + + I S G+ Sbjct: 224 WDLIQLTPKEDKVIEALKIINPDVERIGFTVSQYTKQIRLKIKGEEQPIPLSSMGQGMNR 283 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR----NALFRIVTDIGSQIFMTG-- 349 ++G+ + + +LL+DEI L + + L + ++ QIF T Sbjct: 284 ILGL------MTTAVILENGVLLIDEIETGLHYEAQTDMWRLLIKTAQELNVQIFATTHS 337 Query: 350 -----TDKSVFDSLNET--AKFMRISN 369 + + + + K R+ N Sbjct: 338 WDCICAFQEALEDIEDKPVGKLFRLDN 364 >gi|332358678|gb|EGJ36501.1| cell division protein Smc [Streptococcus sanguinis SK355] Length = 1178 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQIKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ A E + + + Y K + ++ L K + L ++ A L Sbjct: 239 EKLIKA-EEDLTNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 38.0 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|39937549|ref|NP_949825.1| chromosome segregation protein SMC [Rhodopseudomonas palustris CGA009] gi|39651408|emb|CAE29930.1| putative chromosome segregation SMC protein [Rhodopseudomonas palustris CGA009] Length = 1177 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 24/169 (14%) Query: 2 TNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 ++++K+ L + F+++ + + T VG NG GK+N++EA+ + + Sbjct: 21 SDQMKLTRLRLHGFKSFVEPTDFMIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLR 80 Query: 61 YADVT--------RIGSPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQI 105 D+ + + ++ + A ++ + R +R + +I Sbjct: 81 ATDMDAVIFAGSGNRPARNHAEVVMSIDNSDRTAPAALNDADTLDISRRIEREAGSVYRI 140 Query: 106 NDVVIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 N +R D L P++ I +RRR L+ Sbjct: 141 NGREVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 189 Score = 42.2 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K +++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1065 GKKPQSLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1119 Query: 338 VTDIGSQI---FMTGTDKSV 354 +TD+ F+T T + Sbjct: 1120 LTDMAKTTETRFITITHNPI 1139 >gi|149020177|gb|EDL78166.1| SMC2 structural maintenance of chromosomes 2-like 1 (yeast) (predicted) [Rattus norvegicus] Length = 868 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 97/270 (35%), Gaps = 30/270 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLF 252 + ++ L + ++S LKE K L Sbjct: 233 LYIAYQFLLAEDTKERSAGELKEMQDKILK 262 >gi|284929413|ref|YP_003421935.1| condensin subunit Smc [cyanobacterium UCYN-A] gi|284809857|gb|ADB95554.1| condensin subunit Smc [cyanobacterium UCYN-A] Length = 1198 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + +S F+++ + + F T+ G NG GK+NIL+A+ F L+ +G R Sbjct: 2 VHIKRIELSHFKSFGGTTSIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGLRAER 61 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLAD 87 D+ + + + A V ++D Sbjct: 62 LPDLISHNTNNRNNREAYVSVTFDISD 88 >gi|332362455|gb|EGJ40255.1| cell division protein Smc [Streptococcus sanguinis SK1056] Length = 1178 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 NKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 ++ A E + + + Y K + ++ L K + L ++ A L Sbjct: 239 ERLTQA-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|328946756|gb|EGG40894.1| cell division protein Smc [Streptococcus sanguinis SK1087] Length = 1178 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDVANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQIKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ A E + + + Y K + ++ L K + L ++ A L Sbjct: 239 EKLTKA-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|238916989|ref|YP_002930506.1| chromosome segregation protein [Eubacterium eligens ATCC 27750] gi|238872349|gb|ACR72059.1| chromosome segregation protein [Eubacterium eligens ATCC 27750] Length = 1189 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 99/284 (34%), Gaps = 45/284 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ + F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ + F ++ + + + + R RS IN R Sbjct: 61 MEDVIFAGTENRKPVGFAFVSITLDNSDHALPVDYDEVTVSRRVYRSGESEYLINGNSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + RR+ + Sbjct: 121 LKDVTEMFYDTGIGKEGYSIIGQGQIDKILSGKPDERRELFDEAAGIVKFK-RRKATAIK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN----------------- 206 +L R L+ S +E Q+ L V+ + E + Sbjct: 180 KLENERANLVRVN----DILSELEKQVGPLQVQ-SEKAKEYLEYKADLKKYDVNAFLLES 234 Query: 207 -ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +S + E + K LS + + +E+ +K Sbjct: 235 DRISKDLEELIGKIGIADEDLSNSRAEYESTKAEYEEAEEQLSK 278 >gi|62990166|ref|NP_032043.3| structural maintenance of chromosomes protein 2 [Mus musculus] gi|62871715|gb|AAH94380.1| Structural maintenance of chromosomes 2 [Mus musculus] gi|122890022|emb|CAM14006.1| structural maintenance of chromosomes 2 [Mus musculus] gi|148670352|gb|EDL02299.1| structural maintenance of chromosomes 2 [Mus musculus] Length = 1191 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 98/280 (35%), Gaps = 34/280 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + +M ++ + + Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234 Query: 224 IKLSLTGFLDGKFDQSFCALKE------EYAKKLFDGRKM 257 I D K ++S LKE + L + K Sbjct: 235 IAYQFLRAEDTK-ERSAGELKEMQDKIVNLQEVLSENEKK 273 >gi|332797961|ref|YP_004459461.1| homologous recombination repair protein Rad50 [Acidianus hospitalis W1] gi|332695696|gb|AEE95163.1| Rad50, homologous recombination repair enzyme [Acidianus hospitalis W1] Length = 863 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 4/128 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI+ + + F ++ S + F VG NG GKT+I++ I F R ++ Sbjct: 1 MKIEKIFLQNFLSHESSEINFKGSINAIVGQNGAGKTSIIDGIVFSLFSESSRGNI-KNL 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + G + + E +G IK + + + + N + R E+++ ++ Sbjct: 60 VKKGKSTGI---VQTEIRDGNNLYLIKRDIVNSSNDFIAKNNIGIARGRKEVDRKIQEIL 116 Query: 125 LVPSMDRI 132 + + Sbjct: 117 KLDKDILL 124 Score = 40.3 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 7/86 (8%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + I S GE+ + + + +A A+ + + G +++DE + HLDE+++ L + Sbjct: 761 AGNDLDIESLSGGERISIALALRIAIAKSLMDEIG---FMIMDEPTIHLDEERKKELLNV 817 Query: 338 VT---DIGSQIFMTGTDKSVFDSLNE 360 + +I QI + T +++ Sbjct: 818 IKYSMNIIPQIII-VTHDDEIKEISD 842 >gi|12850267|dbj|BAB28654.1| unnamed protein product [Mus musculus] Length = 270 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 94/262 (35%), Gaps = 28/262 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + +M ++ + + Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234 Query: 224 IKLSLTGFLDGKFDQSFCALKE 245 I D K ++S LKE Sbjct: 235 IAYQFLRAEDTK-ERSAGELKE 255 >gi|225026449|ref|ZP_03715641.1| hypothetical protein EUBHAL_00698 [Eubacterium hallii DSM 3353] gi|224956241|gb|EEG37450.1| hypothetical protein EUBHAL_00698 [Eubacterium hallii DSM 3353] Length = 102 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 + + + + F+ + L F + +GDNG GK+++LEAI G Sbjct: 1 MYLNKVTVKNFKAITDMELSFTPGVNLLIGDNGTGKSSMLEAIGVAISG 49 >gi|294010077|ref|YP_003543537.1| chromosome segregation protein [Sphingobium japonicum UT26S] gi|292673407|dbj|BAI94925.1| chromosome segregation protein [Sphingobium japonicum UT26S] Length = 1147 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 18/128 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++IK L +S F+++ L + T VG NG GK+N+LEAI ++ S + R Sbjct: 1 MQIKRLKLSGFKSFVDPTELRIEPGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGGG 60 Query: 61 YADVTRIG-SPSFFSTFARV------------EGMEGLADISIKLETRDDRS-VRCLQIN 106 DV G S FA V +E AD +++ R +R + N Sbjct: 61 MEDVIFAGTSTRPQRDFAEVSLLTVQEQGELFNAVEVAADGELEVTRRIERGAGSAYRAN 120 Query: 107 DVVIRVVD 114 +R D Sbjct: 121 GRDVRAKD 128 Score = 36.4 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K + S GEQ + V + T API +LDE+ A LD+ + Sbjct: 1037 GKKLAALTLLSGGEQALTAVALIFGLF-----LTNPAPICVLDEVDAPLDDANVERFCDL 1091 Query: 338 VTDIGSQI 345 + + +Q Sbjct: 1092 LDAMVAQT 1099 >gi|315652048|ref|ZP_07905049.1| chromosome segregation protein Smc [Eubacterium saburreum DSM 3986] gi|315485695|gb|EFU76076.1| chromosome segregation protein Smc [Eubacterium saburreum DSM 3986] Length = 1185 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I F+++A+ + F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKRIEIQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVSDAVRWVLGEQSAKQLRGGN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ F ++ + DI + + R RS IN R Sbjct: 61 MQDVIFAGTELRKPLGFAYVAITLDNSDHKLDIDFNEVTVSRRLFRSGESEYLINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + K +D+I +G +RR D Sbjct: 121 LKDISELFFDTGIGKDGYSIIGQGQVDKILNGRPEDRRELFD 162 >gi|268324286|emb|CBH37874.1| hypothetical protein, containing RecF/RecN/SMC N terminal domain [uncultured archaeon] Length = 641 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASY 61 I +K + + F +Y R+ + G NG GK++IL AIS L R Sbjct: 9 PDIWLKEIILENFMSYEYARIPLKRGLNLISGPNGAGKSSILLAISVALGQIYTERSRRL 68 Query: 62 ADVTRIGSP-SFFSTFARVEGMEGLADIS 89 D+ R G + E G IS Sbjct: 69 RDLIRRGKELGRITLVFDNEAKNGKRPIS 97 >gi|315230679|ref|YP_004071115.1| DNA double-strand break repair rad50 ATPase [Thermococcus barophilus MP] gi|315183707|gb|ADT83892.1| DNA double-strand break repair rad50 ATPase [Thermococcus barophilus MP] Length = 883 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 82/223 (36%), Gaps = 22/223 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI----SFLSPGRGFRRAS 60 ++I+ + + +FR++ ++ F + + +G NG GK+++L+AI + + + + Sbjct: 1 MRIEKIIVRDFRSHEFTKVTFTSGINLIIGQNGSGKSSLLDAILIGLYWPAKPKDLK--K 58 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR-----DDRSVRCLQINDVVIR---- 111 + + G + + F +G+ +I D N +R Sbjct: 59 DSFLRVNGKSTEITIFFEKDGVRYQVHRNITRGIAFAKYYDGTWHYVTDANQKAVRDWME 118 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 + + + ++ R + + +++ ++ L+ R Sbjct: 119 KLIPYDIFVNAIYIRQGEIDAILESDESREKVVRKVLGLDKYE-----NAYKNLLEVRKV 173 Query: 172 LLTEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLI 212 + ++ + ++++ M + K + + IN LS I Sbjct: 174 IDSKIKGIEEYLNAMKNIDDMIKEAEKELSSAIRQINELSPQI 216 Score = 46.1 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 8/139 (5%) Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-HRSDLIVDYCDKAITIAHGSTGEQKV 294 + A EYA ++F+ + S T+ + L V Y K ++ S GE+ Sbjct: 739 LKEDALAKVGEYASEIFEELTEEKYSGITVKAKESKVVLGVIYDGKERDLSFLSGGERIA 798 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---DIGSQIFMTGTD 351 + + LA + ++ G P+L++DE + +LD+++R L I+ Q+ + D Sbjct: 799 LGLAFRLALSLYLA---GEIPLLIMDEPTPYLDDERRRRLVDIMERYLRKIPQVIIVSHD 855 Query: 352 KSVFDSLNETAKFMRISNH 370 + + D+ + +R+ N Sbjct: 856 EELKDA-ADRVIRVRLENG 873 >gi|87198977|ref|YP_496234.1| chromosome segregation protein SMC [Novosphingobium aromaticivorans DSM 12444] gi|87134658|gb|ABD25400.1| Chromosome segregation protein SMC [Novosphingobium aromaticivorans DSM 12444] Length = 1147 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 11/121 (9%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++ + L +S F+++ L + T VG NG GK+N+LEAI ++ S + R Sbjct: 2 MQFRRLKLSGFKSFVEPAELRIEPGLTGVVGPNGCGKSNLLEAIRWVMGESSPKSMRGGG 61 Query: 61 YADVTRIG-SPSFFSTFARV-----EGMEGLADISIKLETRDDRS-VRCLQINDVVIRVV 113 DV G + FA V G +++ R +R ++N +R Sbjct: 62 MEDVIFAGTATRPARAFAEVMLTAETDPSGPFGGELEVVRRIERGAGSAYRVNGKDVRAK 121 Query: 114 D 114 D Sbjct: 122 D 122 >gi|73668137|ref|YP_304152.1| condensin subunit Smc [Methanosarcina barkeri str. Fusaro] gi|72395299|gb|AAZ69572.1| condensin subunit Smc [Methanosarcina barkeri str. Fusaro] Length = 1175 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + F+++ +++ F T G NG GK+NI++ I F L+ R R Sbjct: 1 MYIKEIEFVNFKSFGKKVKIPFYNDFTTISGPNGSGKSNIIDGILFALGLTSSRTLRAEK 60 Query: 61 YADVTRIGS----PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--------NDV 108 D+ G P F R + + + + E R VR + N Sbjct: 61 LTDLIYNGDASKKPDFAQVTIRFDNSDHKLPLELD-EIEVSRKVRRTKNGYYSYFYFNGK 119 Query: 109 VIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145 + + E++ L + + P + +I S S+ERR+ +D Sbjct: 120 SV-SLGEVHSQLEKAGITPEGYNVVMQGDVTQIISMTSVERRKIID 164 >gi|261207044|ref|ZP_05921733.1| chromosome partition protein SMC [Enterococcus faecium TC 6] gi|289565323|ref|ZP_06445773.1| chromosome segregation protein SMC [Enterococcus faecium D344SRF] gi|294614480|ref|ZP_06694395.1| chromosome segregation protein SMC [Enterococcus faecium E1636] gi|260078672|gb|EEW66374.1| chromosome partition protein SMC [Enterococcus faecium TC 6] gi|289162813|gb|EFD10663.1| chromosome segregation protein SMC [Enterococcus faecium D344SRF] gi|291592657|gb|EFF24251.1| chromosome segregation protein SMC [Enterococcus faecium E1636] Length = 1193 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 38/288 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116 D+ GS + A V + +D + LE + R + I Sbjct: 61 MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K ++ +L + + IFS +RR + + +++R E Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212 + + L+ +E Q+ L + + A E + + + I Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L GK +S + AK+ + + D + Sbjct: 235 KTAKKDWDNKQAQLGKFNLELGKLSESIQEQESILAKQRKENAQADRL 282 >gi|198421707|ref|XP_002129062.1| PREDICTED: similar to structural maintenance of chromosomes 1A [Ciona intestinalis] Length = 1225 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 6/109 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYADV 64 ++ + + F++Y L+ + T +G NG GK+N+++AISF+ R +D+ Sbjct: 4 LESIEVENFKSYRGKILIPFKKFTAIIGPNGSGKSNLMDAISFVLGEKTSSLRVKKLSDL 63 Query: 65 TRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVI 110 G+P ST ARV ++ TR + +IND V+ Sbjct: 64 I-HGAPIGRPISTRARVTATYCNSNGEKTEFTRIIKGTSAENRINDKVV 111 >gi|115526436|ref|YP_783347.1| chromosome segregation protein SMC [Rhodopseudomonas palustris BisA53] gi|115520383|gb|ABJ08367.1| condensin subunit Smc [Rhodopseudomonas palustris BisA53] Length = 1154 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K+ L + F+++ V + T VG NG GK+N++EA+ + + AD Sbjct: 1 MKLTRLRLHGFKSFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRAAD 60 Query: 64 VT--------RIGSPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108 + S + ++ + A + +++ R +R + +IN Sbjct: 61 MDAVIFAGSGNRPSRNHAEVVMTIDNTDHTAPAAMNDQELLEISRRIEREAGSVYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 EVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166 Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K T++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1042 GKKPQTLSLLSGGEQALTALSLIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1096 Query: 338 VTDIGSQIFMTGTDKSVF 355 + + MT T ++ F Sbjct: 1097 LNE------MTSTTETRF 1108 >gi|316957977|gb|EFV47243.1| putative RecF/RecN/SMC N domain protein [Trichinella spiralis] Length = 193 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 13/134 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 IK L + F + + L F + +G NG GK+ +L A+ R R ++ +D Sbjct: 21 IKRLRVRNFMCHRDIDLEFGERVNFIIGVNGSGKSALLSAVMVALGCRAVDTSRGSNLSD 80 Query: 64 VTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQIND---VVIRVV 113 + G I ++ + S R N VV R Sbjct: 81 YVKEGESFAMVEITLCNSGVQSYQSDVYGDCIIVRRRIGANGSSRYSICNSNGNVVCRKY 140 Query: 114 DELNKHLRISWLVP 127 L L + P Sbjct: 141 ATLRLILSKMNIQP 154 >gi|262373319|ref|ZP_06066598.1| chromosome segregation protein SMC [Acinetobacter junii SH205] gi|262313344|gb|EEY94429.1| chromosome segregation protein SMC [Acinetobacter junii SH205] Length = 1149 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 99/291 (34%), Gaps = 46/291 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P R+F + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRVFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + + + R+ D ++ + R L + ++E Q+ L ++I + Sbjct: 180 TLQHLEHTEQN-LARLEDIAAELKSQLRTLKRQSEAAIQYKTLETQIRTLKIEILSFQAN 238 Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 L EY + N + L + A + + + Sbjct: 239 QSQKLQ---QEYTVEMNELGERFKLVRSESHTIEHDLEATSALFQRLIQQS 286 Score = 37.2 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + ++A S GE+ + + + A RL AP +LDE+ A LD+ + Sbjct: 1039 GKRNSSLALLSGGEKALTALALVFAIFRL-----NPAPFCVLDEVDAPLDDANVQRYCNL 1093 Query: 338 VTDIGSQI 345 V ++ Q+ Sbjct: 1094 VKELSEQV 1101 >gi|114625962|ref|XP_001136663.1| PREDICTED: structural maintenance of chromosomes 2-like 1 isoform 1 [Pan troglodytes] gi|114625964|ref|XP_001136738.1| PREDICTED: structural maintenance of chromosomes 2-like 1 isoform 2 [Pan troglodytes] Length = 760 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|254974794|ref|ZP_05271266.1| chromosome partition protein [Clostridium difficile QCD-66c26] gi|255092182|ref|ZP_05321660.1| chromosome partition protein [Clostridium difficile CIP 107932] gi|255313921|ref|ZP_05355504.1| chromosome partition protein [Clostridium difficile QCD-76w55] gi|255516600|ref|ZP_05384276.1| chromosome partition protein [Clostridium difficile QCD-97b34] gi|255649700|ref|ZP_05396602.1| chromosome partition protein [Clostridium difficile QCD-37x79] gi|260682856|ref|YP_003214141.1| chromosome partition protein [Clostridium difficile CD196] gi|260686454|ref|YP_003217587.1| chromosome partition protein [Clostridium difficile R20291] gi|260209019|emb|CBA62112.1| chromosome partition protein [Clostridium difficile CD196] gi|260212470|emb|CBE03375.1| chromosome partition protein [Clostridium difficile R20291] Length = 1184 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 91/269 (33%), Gaps = 35/269 (13%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++ ++F T VG NG GK+NI +A+ L + R Sbjct: 1 MYLKRLELKGFKSFPVKTDIIFKEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ ++ E ++ T R+ R +N+ R Sbjct: 61 LEDVIFAGTDTKKPMNYCEVALTIDNSENQLELDFTEVTIRRRAYRNGESEFFLNNKSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D I S + RR+ D ++ Sbjct: 121 LKDIKEVFLDTGIGKDGYSIIEQGKVDEILSNNPLSRRKVFDEACGISK-------YRYK 173 Query: 164 RLMRGRNRLLTE---GYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSS-LIMEYVQ 217 + RN T+ D + E Q+ L + +E+ L + +++ Sbjct: 174 KQEAERNLSNTKENLERIDDVYIEI-ENQLKPLFNQQTKAKKYLEISEKLKILEVNSFIR 232 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEE 246 + +LS ++ +E+ Sbjct: 233 EIEGIEKELSEVNEHRKVIEKELNEKEEQ 261 >gi|325694851|gb|EGD36756.1| cell division protein Smc [Streptococcus sanguinis SK150] Length = 1178 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 GKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ A E + + + Y K + ++ L K + L ++ A L Sbjct: 239 EKLTQA-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQANLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 38.0 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|189199338|ref|XP_001936006.1| structural maintenance of chromosomes protein 5 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983105|gb|EDU48593.1| structural maintenance of chromosomes protein 5 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1128 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 80/274 (29%), Gaps = 20/274 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 + + ++ F Y + + +G NG GK+ ++ AI L G R + Sbjct: 71 LVRVKLTNFVTYTAAEFHLGPSLNMVIGPNGTGKSTLVCAICLGLGWGSEHLGRAKQVGE 130 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHLR 121 + G+ G + I R + + +N + V EL K Sbjct: 131 YVKHGAAMATIEIELAAGPGKDQNHIITRTIRKEDNQSRWFLNGARSTQKEVIELAKTYS 190 Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR--GRNRLLT 174 I +P + + R + A P + D + +R RN Sbjct: 191 IQIDNLCQFLPQDRVVEFARMTDVERLRETQ-RAAAPPYMVEWHDKLKALRKDERNLETK 249 Query: 175 EGYFDSSWCSSIEAQMAELG-VKINIARVEM------INALSSLIMEYVQKENFPHIKLS 227 + + + Q A G V R E+ + +I + ++ +K + Sbjct: 250 RQNEEKHLEALMRVQTAAQGDVDRIRERQEIQTKLNCLRKAQPVIELRLCRKEIEQLKEN 309 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 L + A+ + D Sbjct: 310 LRVARLELDEIKVDVEPARQAQAEMQSYQSDIER 343 >gi|67969264|dbj|BAE00985.1| unnamed protein product [Macaca fascicularis] Length = 939 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKARSAEELKEMQDKIIKLQEE 266 >gi|58198683|gb|AAW65985.1| chromosome-associated protein E [Homo sapiens] Length = 760 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|228902351|ref|ZP_04066508.1| Chromosome partition protein smc [Bacillus thuringiensis IBL 4222] gi|228857320|gb|EEN01823.1| Chromosome partition protein smc [Bacillus thuringiensis IBL 4222] Length = 1189 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 106/334 (31%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKDEEAKMSTDLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|330822269|ref|YP_004362490.1| hypothetical protein bgla_1p0550 [Burkholderia gladioli BSR3] gi|327374106|gb|AEA65460.1| hypothetical protein bgla_1p0550 [Burkholderia gladioli BSR3] Length = 595 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I FR L F A + +G N VGKT +++A+ L G Sbjct: 1 MHLSRLVIKNFRKLKYAELTFQAGLNVLIGGNNVGKTAVIDALRALLAG------HDEPY 54 Query: 65 TRIGSPS 71 R+G Sbjct: 55 PRLGEED 61 >gi|221633719|ref|YP_002522945.1| putative chromosome segregation protein [Thermomicrobium roseum DSM 5159] gi|221155554|gb|ACM04681.1| putative chromosome segregation protein [Thermomicrobium roseum DSM 5159] Length = 1187 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 97/271 (35%), Gaps = 47/271 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++ L + F+++A + LVFD T VG NG GK+N+ EAI+++ G R Sbjct: 3 VRLLRLALLGFKSFADPVELVFDRGITAIVGPNGSGKSNLAEAIAWVLGEQAGSAVRSRR 62 Query: 61 YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G P S A V + + R+ R + IN R Sbjct: 63 ADDVIFAGGPDRPSLGMAEVTLTLEQDGDELGVPFREVSVTRRVFRDGETQYLINGSRAR 122 Query: 112 VVDEL--NKHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 + D L LR W++ S+D + ERR +L+ H + + Sbjct: 123 LRDVLRIAAILRADWIITRQGSVDDVLEQRPAERRHYLE---------HAAGLS----AL 169 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV-EMINALSSLIMEYVQKENFPHIK 225 R R + Q+AE + + R+ +++ L + + Sbjct: 170 RLRQAEARQ-------------QLAE--AEQHAQRLDDLLRELEPHVHALGEAAQRAREA 214 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 L++ L Q A ++ R+ Sbjct: 215 LAVRASLREALLQLSAARWRRAREEEAKARR 245 >gi|114625958|ref|XP_001136821.1| PREDICTED: structural maintenance of chromosomes 2-like 1 isoform 3 [Pan troglodytes] Length = 1099 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|14591553|ref|NP_143635.1| chromosome assembly protein [Pyrococcus horikoshii OT3] gi|3258234|dbj|BAA30917.1| 1179aa long hypothetical chromosome assembly protein [Pyrococcus horikoshii OT3] Length = 1179 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 97/287 (33%), Gaps = 38/287 (13%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 I+ L + F++Y + ++F T VG NG GK+NI +AI F+ G R + Sbjct: 4 IERLELKGFKSYGNKKVVILFSRGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63 Query: 62 ADVTRIGSP-------SFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVV 113 +D+ GS + + + E D + ++ R R + Sbjct: 64 SDLIFAGSKREPPAKYAEVTIYFNNEDRGFPIDEDEVIIKRRVYPDGRSHYWLNGRRATR 123 Query: 114 DELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 E+ L + + P I +ERR +D + + ER Sbjct: 124 SEILDLLSAAMISPEGYNIILQGDITKFIKMSPLERRLIIDDISGIAEYD-----AKKER 178 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQKENFP 222 ++ L + + + + ++ + K+ R + + L + + Sbjct: 179 ALQE----LKQAEENLAKVDILIGEVKKQLDKLEKERNDALRYLDLKEKLEKARVGLVLG 234 Query: 223 HI-----KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 I ++ G ++ +++ + + + ++ RR Sbjct: 235 EIRKIESEIRNNDERIGNIEREIERMEKRLEEIAKEIVEKENELRRI 281 >gi|323140949|ref|ZP_08075861.1| DNA repair protein RecN [Phascolarctobacterium sp. YIT 12067] gi|322414552|gb|EFY05359.1| DNA repair protein RecN [Phascolarctobacterium sp. YIT 12067] Length = 566 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 85/280 (30%), Gaps = 52/280 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L++ F F +F G+ G GK+ +++A + GR AD R Sbjct: 2 LQSLHVHNFALLEDAHADFTPGFNVFTGETGAGKSILIDAFGMVLGGRS-----SADYVR 56 Query: 67 IGSPSFFSTFARV-------------EGMEGLADISIKLETRDDRSVRCLQINDVVI--- 110 G+ + G+E D+ +K + R IN V + Sbjct: 57 SGTDGLWVQAVFDVSGQQEIKALLAEHGLEPEEDLFLKRQISAAGKSRAY-INGVQVPLA 115 Query: 111 -------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 R+VD +H + L P + F + +++ ++ Sbjct: 116 VLKAIGARLVDIHGQHENQALLKPDAPLHLTDA------FGGSKLAQALQEYKQLYSEYT 169 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + L E + I +S ++ +++ Sbjct: 170 AAVKHLSNLEQENEQQDLLLDRYAWE---------------IKEISDAALKPGEEDGLEA 214 Query: 224 IK--LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 L + + D S+ L EE A R D + Sbjct: 215 EARLLQNSERIMKAVDSSYQQLDEEDAILSRLARVRDQLQ 254 >gi|162452485|ref|YP_001614852.1| hypothetical protein sce4209 [Sorangium cellulosum 'So ce 56'] gi|161163067|emb|CAN94372.1| hypothetical protein sce4209 [Sorangium cellulosum 'So ce 56'] Length = 418 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 123/401 (30%), Gaps = 89/401 (22%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K++ L I +FR A L F + +G NG GKT +LE IS + R+ ++ Sbjct: 2 LKLRRLRIEKFRGVAPGTELRFSDGLNVLLGQNGTGKTTLLELISMVV------RSDFSS 55 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R F + E +++ + + +D L Sbjct: 56 LAR---EEFAVEYELAVPEEATVTVAV------SNKEKTGFVGTKDRPRID-----LPER 101 Query: 124 WLVPSMDRIFSGLSMERRRFL-----------------DRMVFAIDPRHRRRMI------ 160 W + I RR + ++ + Sbjct: 102 WFPVADVTIEDSSPGASRRIRYDVERGLTVGDHEPIEGGWEISCLNAGFLWAYMLLDPEF 161 Query: 161 ----DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE------------- 203 + R+ R+ + +S + ++ ++ + R Sbjct: 162 IVTPTYNRV---RDASSARRFDESLELFTWLTGSSDARRRVFVLRERVLYAGIKSGLLPN 218 Query: 204 -MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 ++ L S+ F H L + G LK + ++ G + Sbjct: 219 ALLRQLGSMYEPSRSDYTFKHSDLDFLATIKGIMGFDAAELKVDVTERNARGELHE---- 274 Query: 263 RTLIGPHRSDLIVDY---CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 +G DL+ + + IT S G+++++ +LA I++ Sbjct: 275 YLTLG----DLVFRFWWEGGEFITHTRLSYGQKRLLTFFYYLA---------CNDDIVIA 321 Query: 320 DEISAHLDEDKRNALFRIVTDIGS-QIFMTGTDKSVFDSLN 359 DE+ L + + V +G Q F+T + + D + Sbjct: 322 DELVNGL---HHHWIAACVEALGQRQAFLTSQNPLLLDYIP 359 >gi|222478619|ref|YP_002564856.1| SMC domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222451521|gb|ACM55786.1| SMC domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 902 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 90/291 (30%), Gaps = 45/291 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + +S F+ Y L T+ G NG GK+++LEA F G + DV Sbjct: 1 MNFDRVRLSNFKPYGDADLRLTEGVTVIHGLNGSGKSSLLEACFFALYGSKALDGTLGDV 60 Query: 65 TRIGSPSFFS------------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 G R++ +G D LET D V V Sbjct: 61 ITNGEEETEVDLWFTHDGASYHIERRLKEYDGRIDHQCTLETTDGSDVTRDGA-RAVREF 119 Query: 113 VDELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 V EL + +++ ++++ + ER+ +D ++ ++ ++ Sbjct: 120 VTELLRMDAEAFVNCAYVRQGEVNKLINATPRERQDTIDDLLQ------LGKLEEY---- 169 Query: 167 RGRNRLLTEGYFD-----SSWCSSIEAQMAELGVKINIARV-----------EMINALSS 210 R R G D ++ Q+AE K R+ + I+ + Sbjct: 170 RERAGDARLGVEDVLENRRGRLDQLDDQIAEKKEKDLHDRLNGLESDLSEVTDEIDRYET 229 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + + LS + + E A R+ D Sbjct: 230 QREQAKETREAAAETLSTHAEKRETLESVAAEIDEIEATIREAERERDEHR 280 Score = 36.4 bits (83), Expect = 7.0, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 76/214 (35%), Gaps = 31/214 (14%) Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + ++ ++ L + R E+ NA+ + E + EN + SL +D Sbjct: 657 ERKETAEEYLEKVDGELDRLAER----RTELENAIGGVNSEIQELENLREERESLAERVD 712 Query: 234 GKFD--QSFCALKEEYAKKLFDGRKM-----DSMSRRTLIGPHRSDLIVDY--------- 277 D + L+ Y + R+ + T + +D Sbjct: 713 ALEDLHEETSELEAMYGDLRAELRQRNVAELERTLNETFELVYGNDAYSHIELDGEYVLT 772 Query: 278 ----CDKAITIAHGSTGEQKVVLVGIFLAHARLISN-TTGFAPI--LLLDEISAHLDEDK 330 + + S GE+ + + + A RL+S G AP L+LDE + LD Sbjct: 773 VYQKDGEPLDPEQLSGGERALFNLSLRCAIYRLLSEGIEGAAPTPPLILDEPTVFLDSGH 832 Query: 331 RNALFRIVTDIGS----QIFMTGTDKSVFDSLNE 360 + L R+V ++ QI + D + + +E Sbjct: 833 VSRLVRLVEEMRGFGVRQILIVSHDDELVGAADE 866 >gi|86607238|ref|YP_476001.1| DNA repair protein RecN [Synechococcus sp. JA-3-3Ab] gi|86555780|gb|ABD00738.1| DNA repair protein RecN [Synechococcus sp. JA-3-3Ab] Length = 568 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 86/273 (31%), Gaps = 30/273 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGFRRASYADV 64 ++ L I F L + F A + G+ G GK+ IL+A+ + P R R S + Sbjct: 2 LRLLRIENFALIEYLEIPFRAGLNVLTGETGAGKSIILDALDAALGGPARALRSGSDRGL 61 Query: 65 TRI-----GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 + + ++E +E S +L R+ + L++N V++ L+ Sbjct: 62 VEAIFQPTAALEAWLEQEQIEPLEEGLVCSRELVMRNGKLSSRLRVNGVLVNKAQMLSLR 121 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 ++ + +RR+LD R R + + + + Sbjct: 122 SQLVEITAQGQTSQLQSPQTQRRWLDAFGGEKLLRLRSEVAACYQTWSQLKAEIASRQQN 181 Query: 180 SSW----CSSIEAQMAELGV----------KINIARVEMINALSSLIMEYVQKENFPHIK 225 +E Q EL K+ R + + + Y + Sbjct: 182 QHLRLQRLDLLELQAQELAALRLEDPDELTKLERERERLAHRVELQQQSYAAHQLL---- 237 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 + + + L + + L + D Sbjct: 238 -----YQNDSGSPAIADLLAQAERLLQSMAQRD 265 >gi|20093122|ref|NP_619197.1| chromosome segregation protein [Methanosarcina acetivorans C2A] gi|19918459|gb|AAM07677.1| chromosome segregation protein [Methanosarcina acetivorans C2A] Length = 1175 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 25/165 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + F+++ +++ F T G NG GK+NI++ I F L+ R R Sbjct: 1 MYIKEIEFVNFKSFGKKVKISFYNDFTTISGPNGSGKSNIIDGILFALGLTSSRTLRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD---DRSVRCLQ--------INDVV 109 D+ G + FA+V D + LE + R VR + N Sbjct: 61 LTDLIYNGDEAKKPDFAQVTIRFDNTDRKLPLELDEIVVSRKVRRTKSAYYSYFYFNGKA 120 Query: 110 IRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145 + + E++ L + + P + +I S S+ERR+ +D Sbjct: 121 V-SLGEIHSQLSKAGVTPEGYNVVMQGDVTQIISMTSVERRKIID 164 >gi|119579380|gb|EAW58976.1| SMC2 structural maintenance of chromosomes 2-like 1 (yeast), isoform CRA_c [Homo sapiens] Length = 1099 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|331007822|ref|ZP_08330925.1| hypothetical protein IMCC1989_2132 [gamma proteobacterium IMCC1989] gi|330418364|gb|EGG92927.1| hypothetical protein IMCC1989_2132 [gamma proteobacterium IMCC1989] Length = 634 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 9/122 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEA-ISFLSPGRGFRRASY 61 +++K + ISE++N L FD IFVG NG GK+N+LEA I F Sbjct: 1 MRLKSVYISEYKNLKKFSLSFDGASFINIFVGKNGSGKSNLLEALIEIFQHLYSF----D 56 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 +D R +S +EG + D + + + + + + V+ + H Sbjct: 57 SD--RSELLFNYSIQYEIEGKDIQIDWKDEALRINGKVRKTVGKTALPENVLVYYSGHNT 114 Query: 122 IS 123 Sbjct: 115 AV 116 >gi|42519392|ref|NP_965322.1| chromosome partitioning protein Smc [Lactobacillus johnsonii NCC 533] gi|41583680|gb|AAS09288.1| chromosome partitioning protein Smc [Lactobacillus johnsonii NCC 533] Length = 1186 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 59/377 (15%), Positives = 121/377 (32%), Gaps = 65/377 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + ++ L ++ F+++A + F+ T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116 DV GS A VE + D + + + R + N +++ Sbjct: 61 MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLASDNDEVVVTRKILRNGESDYLLNHHPVR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K +R ++ M D I + +RR +F E Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ A + + +++ L I ++ + Sbjct: 176 IALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL------IGPHRSDLIVDY 277 LD K Q E ++ K + ++ L + ++DL Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEEKKAVAKKAAANQGILNKLDDEVKQSQADLEEKR 273 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHA---RLISNTTGFAPILLLDEISA---HLDEDKR 331 A +Q+++ + +A + + + E +A L +++R Sbjct: 274 KQSNERHAEKDEKQQELLSLTQKIAALTTDLQMHQQSREYDVATQKEYNAQSEEL-KERR 332 Query: 332 NALFRIVT----DIGSQ 344 L + D+ SQ Sbjct: 333 KRLLDQLAANEKDLNSQ 349 >gi|229025636|ref|ZP_04182042.1| DNA repair protein recN [Bacillus cereus AH1272] gi|228735634|gb|EEL86223.1| DNA repair protein recN [Bacillus cereus AH1272] Length = 579 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 104/277 (37%), Gaps = 51/277 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110 G+ A+ E ++ + + + RD ++N ++ Sbjct: 57 YGTEKAEIEGLFYVEDDKHPCIAKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164 ++ E+ K L + + ER F+ DR+V +D ++ D+ER Sbjct: 117 SILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGDRIVKQLD-IYQNVYGDYER 172 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 L + L S E QMA R+++I I + K + Sbjct: 173 LKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKMD-EEY 212 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 +L+ F++ + AL + Y D + +D + Sbjct: 213 ELTEERLKISNFEKIYKALGDAYRSLSGDSQGLDHVR 249 >gi|268532164|ref|XP_002631210.1| C. briggsae CBR-MIX-1 protein [Caenorhabditis briggsae] gi|187036949|emb|CAP23615.1| CBR-MIX-1 protein [Caenorhabditis briggsae AF16] Length = 1296 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 6/88 (6%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++Y + F Q G NG GK+N+L++I FL S R Sbjct: 1 MHIKSIQLDGFKSYQKHTEIAPFSPQFNAITGYNGSGKSNVLDSICFLLGISKLDNIRAK 60 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLAD 87 S ++ G R + + Sbjct: 61 SMNELISHGGSKA-VVQIRFDNRDKKQS 87 >gi|326430832|gb|EGD76402.1| hypothetical protein PTSG_07521 [Salpingoeca sp. ATCC 50818] Length = 1240 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 65/183 (35%), Gaps = 23/183 (12%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASY 61 +++ L + F++Y + + +G NG GK+N+++AISF+ R R A Sbjct: 1 MRLDRLELENFKSYGGHCVIGPFTAFSAVIGPNGSGKSNLMDAISFVLGVRARELRGAQL 60 Query: 62 ADVT------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI----- 110 D+ G + V+ + AD I + + +IN + Sbjct: 61 KDLIYSSDSATKGKLRAKVSAVFVDANDEDADELILSRSISAKGSSDYKINGKAVTWEQY 120 Query: 111 ----RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 + + L K ++ I + + + +++ + ++E Sbjct: 121 DERLQSLGLLVKAKNFLVFQGDVENIAAKSPKQLTQLFEQISGS-----AALRDEYEAAK 175 Query: 167 RGR 169 + R Sbjct: 176 KAR 178 >gi|315426880|dbj|BAJ48500.1| conserved hypothetical protein [Candidatus Caldiarchaeum subterraneum] Length = 584 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 8/135 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVT 65 I+ + + F ++ R+ + VG NG GK++IL AIS L R AD+ Sbjct: 13 IREVILENFMSHEYSRIPLRRGLNVIVGPNGAGKSSILLAISVALGQTYTERGQRLADLI 72 Query: 66 RIGSPSFFSTFAR----VEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNK 118 R G S V+G+ + I ++ + ++ + + E+ Sbjct: 73 RRGYESARVAVVFDNRPVDGVRPIPSINSDTVTITRFLKKTGEYWHYVNNRFKTKAEVGN 132 Query: 119 HLRISWLVPSMDRIF 133 L + P I Sbjct: 133 LLSRIGINPDNVLII 147 >gi|260588639|ref|ZP_05854552.1| putative cell division protein Smc [Blautia hansenii DSM 20583] gi|331082010|ref|ZP_08331138.1| chromosome segregation protein SMC [Lachnospiraceae bacterium 6_1_63FAA] gi|260541114|gb|EEX21683.1| putative cell division protein Smc [Blautia hansenii DSM 20583] gi|330405605|gb|EGG85135.1| chromosome segregation protein SMC [Lachnospiraceae bacterium 6_1_63FAA] Length = 1186 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 98/267 (36%), Gaps = 36/267 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ + F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVQGFKSFANKITFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGGN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ F ++ + I + + R RS +N R Sbjct: 61 MQDVIFSGTETRKPLGFAYVAITLDNSDHKLPIDYQEVTIARRLYRSGESEYLLNGTSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + +RR Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVK--FKRRKNTAI 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQK 218 + + + LT S + Q+A L K+ + + E + L I ++ + Sbjct: 179 KKLEEEQQNLTRVN---DILSELTRQLAPLEKQAETAKVYLKKKEALKQL--DIQMFLVE 233 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKE 245 +L ++ K++ + L+E Sbjct: 234 MARIREQLK---AVEEKYEIAQSDLEE 257 >gi|329667083|gb|AEB93031.1| chromosome partitioning protein Smc [Lactobacillus johnsonii DPC 6026] Length = 1186 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 60/377 (15%), Positives = 121/377 (32%), Gaps = 65/377 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + ++ L ++ F+++A + F+ T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116 DV GS A VE + D + + + R + N +++ Sbjct: 61 MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLASDNDEVVVTRKILRNGESDYLLNHHPVR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K +R ++ M D I + +RR +F E Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ A + + +++ L I ++ + Sbjct: 176 IALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL------IGPHRSDLIVDY 277 LD K Q E ++ K + ++ L + ++DL Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEEKKAVAKKAAANQGILNKLDDEVKQSQADLEEKR 273 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHA---RLISNTTGFAPILLLDEISA---HLDEDKR 331 A +Q+++ + +A + + + E SA L +++R Sbjct: 274 KQSNERHAEKDEKQQELLSLTQKIAALTTDLQMHQQSREYDVATQKEYSAQSEEL-KERR 332 Query: 332 NALFRIVT----DIGSQ 344 L + D+ SQ Sbjct: 333 KRLLDQLAANEKDLNSQ 349 >gi|325969543|ref|YP_004245735.1| SMC domain-containing protein [Vulcanisaeta moutnovskia 768-28] gi|323708746|gb|ADY02233.1| SMC domain-containing protein [Vulcanisaeta moutnovskia 768-28] Length = 827 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 25/180 (13%) Query: 4 RIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RR 58 RI+I L I +FR + R+ F+ I G G GKT+I+++I + G R Sbjct: 2 RIRINELIIRDFRGFMGENRISFNDGINIIHGPVGSGKTSIVQSIEYALYGTQLEVKERV 61 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 + D+ + S G+E + + +K + R IN + + + +K Sbjct: 62 SKLTDLINEEANSLLVKLVLTNGIEVIRE--LKKSGENVRESSSAIINGIRYKDDEVTSK 119 Query: 119 HLRISWLVPSMDR------------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 + + + G +R F+D++ + + R + Sbjct: 120 IIETLGVDDDDFERFVLVTHRTLEALVYGSVTKRSLFIDKLFG------LEILDNLNRSL 173 Score = 38.0 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 85/263 (32%), Gaps = 66/263 (25%) Query: 154 RHRRRMIDFERLMRGRNRL---LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210 + RR + L R L L+ D+ + IE Q+ + ++ R ++ + Sbjct: 550 SYLRRYRELNSLRRQEEELRQQLSNLGIDTRAITGIEDQIRYIDERLTQVRAKLSDD--- 606 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF-------------DGRKM 257 ++L+L+ K D S + ++ + + R Sbjct: 607 -------SAELSRLELALSSIGFDKEDPSTLRKRLDFLEDFYNKLTRIRAGIRDVQARVR 659 Query: 258 DSMSRRTLIGPHR--------SDL------------------------IVDYCDKAITIA 285 D M + DL + +TI+ Sbjct: 660 DEMIKIVRDNVGSIFEMLYPYDDLEGAGIEVTVKDKGIIGIVSEYTLYAFRPGGRKVTIS 719 Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343 S G++ + + L+ R ++ LL+DE ++DE+ R A ++T S Sbjct: 720 RLSDGQRLTIALSFLLSVYRATNHNID---FLLMDEPIPYVDENIRRAFASLLTRFISEG 776 Query: 344 ---QIFMTGTDKSVFDSLNETAK 363 Q+ +T + + + + A+ Sbjct: 777 LINQVIITTQSEGLVNDIVNAAR 799 >gi|229031823|ref|ZP_04187811.1| DNA repair protein recN [Bacillus cereus AH1271] gi|228729441|gb|EEL80430.1| DNA repair protein recN [Bacillus cereus AH1271] Length = 600 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 109/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V + ++ Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGDRIVKQLS-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNIR 270 >gi|218899001|ref|YP_002447412.1| chromosome segregation SMC protein [Bacillus cereus G9842] gi|218543105|gb|ACK95499.1| chromosome segregation SMC protein [Bacillus cereus G9842] Length = 1189 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 106/334 (31%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKDEEAKMSTDLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|162455965|ref|YP_001618332.1| hypothetical protein sce7683 [Sorangium cellulosum 'So ce 56'] gi|161166547|emb|CAN97852.1| hypothetical protein sce7683 [Sorangium cellulosum 'So ce 56'] Length = 428 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 13/116 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRR 58 ++I + + FR +A+ L D T+ VG NG GKT+ L+AI L PGR R Sbjct: 1 MRISSIRLQNFRGFAACTLSLDRPLTVLVGVNGAGKTSTLDAIVRLLGVTNRVPGRAKRL 60 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 AD R + ++ + + + R R + +N + R Sbjct: 61 LVDAD-IRRDAAGC-----EIDMVGTTNGATFHTGIQLARGGRQV-VNTTLPRRAG 109 >gi|91773464|ref|YP_566156.1| condensin subunit Smc [Methanococcoides burtonii DSM 6242] gi|91712479|gb|ABE52406.1| condensin subunit SMC [Methanococcoides burtonii DSM 6242] Length = 1174 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 99/278 (35%), Gaps = 36/278 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + F+++ +++ F T G NG GK+NI++ I F LS R R Sbjct: 1 MYIKEIEFINFKSFGKKVKIPFFDDFTTISGPNGSGKSNIIDGILFVLGLSNSRTLRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKL---ETRDDRSVRC--------LQINDVV 109 D+ G + FA+V D + + E R +R N Sbjct: 61 LTDLIYNGDKAKRPDFAQVTIKFDNTDREMPVDADEVIISRKIRETDNGYYSYFYFNGKA 120 Query: 110 IRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 + + EL+ +L + + P + RI + ERR+ +D + + Sbjct: 121 V-SLTELHNYLSKARVTPEGYNVVMQGDVTRIITMTPNERRKIIDEIAGVAEFD-----N 174 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI--NALSSLIMEYVQK 218 +R + + +E Q+ K+ + R + + AL M++ Sbjct: 175 KRDRALNELEIVRERVERADILIEEVEKQL----EKLKLERDQAVKYQALKQEKMKFEGF 230 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 +K + + D SF +E + + RK Sbjct: 231 VLLSKLKDAKVELENVDKDISFKKEVQEKLQLSIEERK 268 >gi|76152544|gb|AAX24235.2| SJCHGC07985 protein [Schistosoma japonicum] Length = 194 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-RRA 59 + IK L I F++Y + FD Q G NG GK+NIL+AI FL R A Sbjct: 10 MYIKSLVIDGFKSYCQRTEIDGFDPQFNAITGLNGSGKSNILDAICFLLGITNLSHVRAA 69 Query: 60 SYADVTRIGSPSFF------STFARVE------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + + F V+ G E +++I + + L IN Sbjct: 70 NLHELVYKCGQAGINKATVSAVFDNVDKSQSPYGYEQFDELTITKQIVVGGRNKYL-ING 128 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + + V + + Sbjct: 129 TNATTTRVHDLFHSVQLNVNNPHFLIMQG 157 >gi|5541713|emb|CAB51218.1| chromosome-associated protein-E homolog (fragment) [Arabidopsis thaliana] Length = 317 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 18/125 (14%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA+ +V FD G NG GK+NIL++I F ++ + R A Sbjct: 1 MHIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G V G E ++I++ + + L IN Sbjct: 61 NLQELVYKQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYL-ING 119 Query: 108 VVIRV 112 + + Sbjct: 120 KLAQP 124 >gi|170590714|ref|XP_001900116.1| SMC proteins Flexible Hinge Domain containing protein [Brugia malayi] gi|158592266|gb|EDP30866.1| SMC proteins Flexible Hinge Domain containing protein [Brugia malayi] Length = 1208 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%) Query: 1 MTNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRG 55 MT ++IK + I F++YA ++ FDAQ G NG GK+NIL+AI F +S Sbjct: 1 MTAGMRIKRIEIDGFKSYAQRQIIDGFDAQFNAITGLNGSGKSNILDAICFVLGISNLSQ 60 Query: 56 FRRASYADVT-RIGSPSFFSTFARV 79 R A +D+ + G + Sbjct: 61 VRAAQLSDLVYKQGQAGISKATVTI 85 >gi|122890021|emb|CAM14005.1| structural maintenance of chromosomes 2 [Mus musculus] Length = 471 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 98/280 (35%), Gaps = 34/280 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + +M ++ + + Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234 Query: 224 IKLSLTGFLDGKFDQSFCALKE------EYAKKLFDGRKM 257 I D K ++S LKE + L + K Sbjct: 235 IAYQFLRAEDTK-ERSAGELKEMQDKIVNLQEVLSENEKK 273 >gi|91088785|ref|XP_967679.1| PREDICTED: similar to structural maintenance of chromosomes protein 1A [Tribolium castaneum] gi|270011628|gb|EFA08076.1| hypothetical protein TcasGA2_TC005672 [Tribolium castaneum] Length = 1222 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 9/122 (7%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62 ++K + + F++Y + +G NG GK+N ++AISF+ + R + Sbjct: 4 RLKHIEVENFKSYKGHRIIGPLKPFNAVIGPNGSGKSNFMDAISFVMGEKTQSLRVKRLS 63 Query: 63 DVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 D+ G+ S ++ A V ++ + I + S +IN V+ + L Sbjct: 64 DLI-HGAAISKPISRSASVAAVFVLDEESGKEICFQRSVQGSSSEYRINGTVVSNNEYLT 122 Query: 118 KH 119 + Sbjct: 123 EL 124 >gi|317508545|ref|ZP_07966210.1| RecF/RecN/SMC N terminal domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316253171|gb|EFV12576.1| RecF/RecN/SMC N terminal domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 774 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + ++ L + F+++AS LVF+ T VG NG GK+NI +A+S++ + R A Sbjct: 1 MHLRSLTLKGFKSFASPTTLVFEPGITAVVGANGSGKSNIADALSWVMGEQGAKSLRGAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I R R IN R Sbjct: 61 MDDVIFAGTSKRPALGRAEVTLVIDNADGALPIDYTEVAVTRRMYRDGGGEYLINGDSCR 120 Query: 112 VVD 114 ++D Sbjct: 121 LMD 123 >gi|152983078|ref|YP_001352718.1| hypothetical protein mma_1028 [Janthinobacterium sp. Marseille] gi|151283155|gb|ABR91565.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 605 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 60/383 (15%), Positives = 118/383 (30%), Gaps = 105/383 (27%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--------- 55 + + LNI+ FR +L F A + VG N VGK+ +++A+ L G+ Sbjct: 1 MHLAELNITNFRKLRDAKLRFQAGLNVLVGANNVGKSAVVDALRALLAGQEEPYPRLDVA 60 Query: 56 --FRRA------------SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101 R A + + R F + A G +G +I I + D Sbjct: 61 DRHRPAEGEPEGDIDFHYVFRGLDRDDEADFLA--ALKAGGDGQMEIHIHVRYFDADKTG 118 Query: 102 CLQI-----NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156 ++ + + ++ ++ ++LR +L P + R Sbjct: 119 RFRVKRWCGDHEDVPLLSDMMENLRGVYLQP----LRDASQSLRP--------------- 159 Query: 157 RRMIDFERLMRGRNRLLTEGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIM 213 R RL+ LLT+ + ++ ++ + I+ S I Sbjct: 160 SRNSQLSRLL----HLLTDDAGRDGINAALQKLDEELKQHAPMIST---------QSAIA 206 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 +K +LT L D + + Sbjct: 207 TRHGDMLGEQLKQALTVGLSAS----------------------DFQRLSSRLSLSVDQF 244 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 ++ ++ + + L+ L NT L+++E AHL + Sbjct: 245 EIEQNGLGFNN---------LIFMAVVLSE--LAKNTDATYRGLIVEEPEAHLHPQLQAV 293 Query: 334 LFRIVTDIGS-------QIFMTG 349 L R + + + Q+F+T Sbjct: 294 LLRYLASLQAVAGEKPVQLFVTS 316 >gi|282900775|ref|ZP_06308715.1| hypothetical protein CRC_02596 [Cylindrospermopsis raciborskii CS-505] gi|281194305|gb|EFA69262.1| hypothetical protein CRC_02596 [Cylindrospermopsis raciborskii CS-505] Length = 360 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA----SYA 62 I L + F + +++ F + + +G NG GKT++L+A FLS + S Sbjct: 2 ITHLELKNFMAFTDVKIDFSPKINVIIGKNGTGKTHLLKAAYFLSGVAPLFKNNSHISDK 61 Query: 63 DVTR 66 ++ + Sbjct: 62 ELVK 65 >gi|322701334|gb|EFY93084.1| structural maintenance of chromosomes 5 smc5 [Metarhizium acridum CQMa 102] Length = 1119 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 83/261 (31%), Gaps = 20/261 (7%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61 I +++ F Y + +G NG GK++++ AI L G R S Sbjct: 76 AIVRVSVQNFVTYEKAEFFPGPHLNMVIGPNGTGKSSLVCAIC-LGLGYSPKHLGRAGSV 134 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119 + + G + ++ IK++ R +++ + +N + + EL K Sbjct: 135 KEFVKHGKDIATIEIELQKKPRDRSNYVIKVQIRREQNSQKWWLNGKETSHKRIQELMKS 194 Query: 120 LRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDFERLMRGRNRLL 173 L+I +P R+ + L + A P + + + + L Sbjct: 195 LKIQVDNLCQFLPQD-RVVEFAACTPVDLLHETLRAAAPEEMLLWQSQLQEMHKEKKGLA 253 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + D +E + L ++ R I E VQ + + D Sbjct: 254 DAVHSDVDALRILENRQQGLQADVDRIRER------EEIQEKVQNLQSALVFAKYSEARD 307 Query: 234 GKFDQSFCALKEEYAKKLFDG 254 + E A + + Sbjct: 308 NHGKARDRKKEAERALQRLES 328 >gi|319939365|ref|ZP_08013725.1| chromosome segregation protein SMC [Streptococcus anginosus 1_2_62CV] gi|319811351|gb|EFW07646.1| chromosome segregation protein SMC [Streptococcus anginosus 1_2_62CV] Length = 1177 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 56/290 (19%), Positives = 107/290 (36%), Gaps = 36/290 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A +++FD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVIFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNKDRFIQQAADEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVE-MINALSSLIMEYV 216 + L Y S +E Q A+ +K++ R ++ L + I Sbjct: 179 SKLSQTQDNLDRLEDIIYELDSQVKPLEKQATTAKQFLKLDEERRALYLDVLIAQIKGNK 238 Query: 217 QKENFPHIKL-----SLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSM 260 + N +L SL+ + + + AL +E L D Sbjct: 239 TQLNDTEERLVGIQQSLSAYYSKRDQLEQENALLKEKRHDLQKQMADDQA 288 Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 22/163 (13%) Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ + + LS L ++ +KE + R+ ++ Sbjct: 982 LDAVEQFEEVSQRLHFLNTQRDDVLSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVT 1041 Query: 262 RRTLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARL 306 R + G +DLI+ D K ++ S GE+ + + + + R+ Sbjct: 1042 FRQMFGGGSADLILTEGDLLTAGVEISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV 1101 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFM 347 P ++LDE+ A LDE + D SQ + Sbjct: 1102 -----KTIPFVILDEVEAALDEANVKRFGDYLNRFDKDSQFIV 1139 >gi|296123944|ref|YP_003631722.1| SMC domain protein [Planctomyces limnophilus DSM 3776] gi|296016284|gb|ADG69523.1| SMC domain protein [Planctomyces limnophilus DSM 3776] Length = 653 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62 +KI + I FR++ + FD +T FVG NG GK+ IL A++ FR +S + Sbjct: 1 MKISQVRIQNFRSFRDETVHFD-NYTCFVGSNGSGKSTILMALNVF-----FRNSSSSVT 54 Query: 63 DVTRIGSPSF 72 DV +G+ F Sbjct: 55 DVVNLGAEDF 64 >gi|257454406|ref|ZP_05619668.1| SMC domain protein [Enhydrobacter aerosaccus SK60] gi|257448172|gb|EEV23153.1| SMC domain protein [Enhydrobacter aerosaccus SK60] Length = 1215 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 21/131 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L ++ F+++A+ F T VG NG GK+N+++AI ++ S + R + Sbjct: 1 MRLKQLKLAGFKSFANPTTFHFPKTITAIVGPNGCGKSNVIDAIRWVLGESSAKQLRGGA 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC---------L 103 +DV G+ S F G +G + I L + SVR Sbjct: 61 MSDVIFAGTQEKSAKSLASVELVFEHTRGEDGKSGIHHALNLYQELSVRRQINKEGKSDY 120 Query: 104 QINDVVIRVVD 114 IN +R D Sbjct: 121 FINGTKVRRRD 131 >gi|228909673|ref|ZP_04073496.1| Chromosome partition protein smc [Bacillus thuringiensis IBL 200] gi|228849962|gb|EEM94793.1| Chromosome partition protein smc [Bacillus thuringiensis IBL 200] Length = 1189 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 106/334 (31%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKDEEAKMSTDLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|118479365|ref|YP_896516.1| DNA repair protein [Bacillus thuringiensis str. Al Hakam] gi|118418590|gb|ABK87009.1| DNA replication and repair protein RecN [Bacillus thuringiensis str. Al Hakam] Length = 600 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 59/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 23 LSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 78 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 133 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 188 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ N +L ++ F++ + AL + Y DG+ +D++ Sbjct: 230 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270 >gi|304320000|ref|YP_003853643.1| chromosome segregation protein [Parvularcula bermudensis HTCC2503] gi|303298903|gb|ADM08502.1| chromosome segregation protein [Parvularcula bermudensis HTCC2503] Length = 1157 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 40/232 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 ++ + L ++ F+++ T VG NG GK+N+LEA+ ++ R Sbjct: 1 MEFQRLRLTGFKSFVEPTDFEIRPGLTGIVGPNGCGKSNLLEALRWVMGATSAKALRAGG 60 Query: 61 YADVTRIGS---------PSFFSTFARVEGMEGL-----------ADISIKLETRDDRSV 100 DV GS P ++ A G E ++S ++ + + + Sbjct: 61 MEDVIFAGSGTAERTGRPPRQWAEVALQIGNETRTAPDAYNDQPLIEVSRRITKKAEGTQ 120 Query: 101 RCLQINDVVIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR---MVF 149 +IN +R D L P++ R + + RR+FL+ + Sbjct: 121 STYRINGKEVRAKDVQLLFADGATGANSPALVRQGQVSDLINAKPENRRKFLEEAAGVAG 180 Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 RH + ++G ++ L Q+A + R Sbjct: 181 LYTRRHEAELR-----LKGASQNLERLDDVLGELEQQRGQLARQARQAVRYR 227 >gi|326791394|ref|YP_004309215.1| chromosome segregation protein SMC [Clostridium lentocellum DSM 5427] gi|326542158|gb|ADZ84017.1| chromosome segregation protein SMC [Clostridium lentocellum DSM 5427] Length = 1196 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 65/383 (16%), Positives = 128/383 (33%), Gaps = 67/383 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + + + I F+++ +++L T +G NG GK+N+ +AI L + R + Sbjct: 1 MYLDKIEIHGFKSFGDAVKLNIPKGITGVIGPNGSGKSNVADAIRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ + ++ + I I ++ R RS IN R Sbjct: 61 MEDIIFAGTEKRKSLGYAEVALTIKNPDETVRIAYTEIVIKRRVYRSGESEYFINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +DR+ S ERR + ++ R + E Sbjct: 121 LKDVQELFMDTGIGKDGYSIIGQGQIDRVLSSKPEERRTLFEEAAGIYK--YKVRRQEAE 178 Query: 164 RLM-RGRNRL----------------LTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206 R + + R L L ++ ++ ++ + + I I I Sbjct: 179 RKLEKQRENLTRLQDIIGEIENRLSPLEREAGKTTQFLRLKDELKGIDINIFIY---EIE 235 Query: 207 ALSSLIMEYVQKENFPHIKLS---LTGFLDGKFDQSFCALKEEYAKKLFD------GRKM 257 L I E K +L + + S+ ++E + + ++ Sbjct: 236 RLEKEIQELSCKMIATDEELKDKNTQYLSKCELNDSYKKQRDELYHQTENLIEAISEKEK 295 Query: 258 DSMSRRTLIGPHRSDLI--------VDYCDKAITIAHGSTGEQKVVL----VGIFL--AH 303 D +++ + + + V K T AH S E++ L + L A Sbjct: 296 DQERKQSQLTINAEKKVNIERLLEQVYEDQKNQTNAHESKIEKRSFLETKRTALELEKAS 355 Query: 304 ARLISNTTGFAPILLLDEISAHL 326 I LL++E +HL Sbjct: 356 KMAIIEQEEEKINLLMEE-LSHL 377 >gi|315221418|ref|ZP_07863339.1| segregation protein SMC [Streptococcus anginosus F0211] gi|315189537|gb|EFU23231.1| segregation protein SMC [Streptococcus anginosus F0211] Length = 1177 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 56/290 (19%), Positives = 107/290 (36%), Gaps = 36/290 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A +++FD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVIFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVIVVLDNKDRFIQQAADEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVE-MINALSSLIMEYV 216 + L Y S +E Q A+ +K++ R ++ L + I Sbjct: 179 SKLSQTQDNLDRLEDIIYELDSQVKPLEKQATTAKQFLKLDEERRALYLDVLIAQIKGNK 238 Query: 217 QKENFPHIKL-----SLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSM 260 + N +L SL+ + + + AL +E L D Sbjct: 239 TQLNDTEERLVGIQQSLSAYYSKRDQLEQENALLKEKRHDLQKQMADDQA 288 Score = 37.2 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 22/163 (13%) Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ + + LS L ++ +K+ + R+ ++ Sbjct: 982 LDAVEQFEEVSQRLHFLNTQRDDVLSAKNLLLETIEEMNDEVKDRFKTTFEAIRESFKVT 1041 Query: 262 RRTLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARL 306 R + G +DLI+ D K ++ S GE+ + + + + R+ Sbjct: 1042 FRQMFGGGSADLILTEGDLLTAGVEISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV 1101 Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFM 347 P ++LDE+ A LDE + D SQ + Sbjct: 1102 -----KTIPFVILDEVEAALDEANVKRFGDYLNRFDKDSQFIV 1139 >gi|116283838|gb|AAH32705.1| SMC2 protein [Homo sapiens] Length = 781 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + ++ E E+ Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232 Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + ++ L + +S LKE K + + Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266 >gi|121534490|ref|ZP_01666313.1| DNA repair protein RecN [Thermosinus carboxydivorans Nor1] gi|121306983|gb|EAX47902.1| DNA repair protein RecN [Thermosinus carboxydivorans Nor1] Length = 570 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 30/201 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L ++ F ++ F I G+ G GK+ +++A L+ G R + AD+ R Sbjct: 2 LKSLTVTNFALIDQAQVEFAPGLNILTGETGAGKSILIDA---LNTLLGSRTS--ADLIR 56 Query: 67 IGSPSF-FSTFARVEGMEGLA-----------DISIKLETRDDRSVR-CLQIND--VVIR 111 G F + G+A + + + R RS + + +N V + Sbjct: 57 SGCEYFRVEAVFEISAAGGVAALLEEQGIPIEEGQLIISRRYTRSGKNTIIVNGCQVPLS 116 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG--- 168 V+ EL L M +M R +V + D R ++ ++ R+ + Sbjct: 117 VLRELGGKLV------DMHGQHENQTMLRPESYLPLVDSSDSRIEAKLAEYSRIYQEWSG 170 Query: 169 -RNRLLTEGYFDSSWCSSIEA 188 RN LL ++ Sbjct: 171 VRNELLKAEKLARERMQRLDM 191 >gi|81300818|ref|YP_401026.1| hypothetical protein Synpcc7942_2009 [Synechococcus elongatus PCC 7942] gi|81169699|gb|ABB58039.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 922 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 51/236 (21%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYA 62 ++I+ +++ F+ +A F G+NG GKT+ILEAI+ G+R+ Sbjct: 1 MEIRSVSLRNFKTHAEAAFEFRLGVNAICGENGAGKTSILEAIAWTLFDFDSGYRK---E 57 Query: 63 DVTRIGSPSFFSTFARVEGMEGLA--------------------DISIKLETRDDRSVRC 102 ++ R G + T V +G ++ +KL+ ++ S Sbjct: 58 ELRRQGESNTSVTVGLVSARDGRYYEVQRRSFKNRPDSYQIYDPELGLKLDNLENVSAAR 117 Query: 103 LQI-NDVVIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159 L + + + R +L++ +P F +RRR D ++ + Sbjct: 118 LWLCDHLGFRAGMDLSRLFAEVIGIPQGTFTADFLKTPSDRRRIFDPILG---------L 168 Query: 160 IDFERLMRGRNRLLTEG--------------YFDSSWCSSIEAQMAELGVKINIAR 201 + R L + + ++E Q+ E+ + R Sbjct: 169 ESYRDAHRQSIDLQRYAEGQQQAIAQQVAILSAEVADLPTLEQQLQEISQSLEQQR 224 >gi|56752095|ref|YP_172796.1| hypothetical protein syc2086_c [Synechococcus elongatus PCC 6301] gi|56687054|dbj|BAD80276.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 922 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 51/236 (21%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYA 62 ++I+ +++ F+ +A F G+NG GKT+ILEAI+ G+R+ Sbjct: 1 MEIRSVSLRNFKTHAEAAFEFRLGVNAICGENGAGKTSILEAIAWTLFDFDSGYRK---E 57 Query: 63 DVTRIGSPSFFSTFARVEGMEGLA--------------------DISIKLETRDDRSVRC 102 ++ R G + T V +G ++ +KL+ ++ S Sbjct: 58 ELRRQGESNTSVTVGLVSARDGRYYEVQRRSFKNRPDSYQIYDPELGLKLDNLENVSAAR 117 Query: 103 LQI-NDVVIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159 L + + + R +L++ +P F +RRR D ++ + Sbjct: 118 LWLCDHLGFRAGMDLSRLFAEVIGIPQGTFTADFLKTPSDRRRIFDPILG---------L 168 Query: 160 IDFERLMRGRNRLLTEG--------------YFDSSWCSSIEAQMAELGVKINIAR 201 + R L + + ++E Q+ E+ + R Sbjct: 169 ESYRDAHRQSIDLQRYAEGQQQAIAQQVAILSAEVADLPTLEQQLQEISQSLEQQR 224 >gi|84385714|ref|ZP_00988745.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01] gi|84379694|gb|EAP96546.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01] Length = 842 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 26/43 (60%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 K+ + ++ FR Y + T+ VG+NG GKT+ILEAIS Sbjct: 421 KVNQIKLTNFRGYTDFTIPIHESLTVLVGENGAGKTSILEAIS 463 >gi|49481963|gb|AAT66693.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A87] Length = 573 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 92/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSXSFDKGLTVLXGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ + A++ I + +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ ++ E+ L + LD A + + + Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 L+ + S E QMA R++++ +E E + Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQATLELGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + A+++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248 >gi|253700544|ref|YP_003021733.1| SMC domain protein [Geobacter sp. M21] gi|251775394|gb|ACT17975.1| SMC domain protein [Geobacter sp. M21] Length = 987 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++I +++ +++ + F + G NG GK+ I EAI + G Sbjct: 1 MRIISVHLKNIKSHRDKEIAFSPGINVLSGANGSGKSTIFEAIGYALFGVS 51 Score = 36.4 bits (83), Expect = 6.8, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 28/156 (17%) Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 + E GV + R ++ +SS + E ++E + + + Sbjct: 827 EALKEQGVLVKFLRNQVFKNVSSQLSERFREEISFRADRIYRSICASDEELVWGENYQVV 886 Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307 K + +G+ + D S G+ +V + LA + I Sbjct: 887 LKDMAEGQVRER----------SDD-------------QLSGGQMMSAVVALRLALLQTI 923 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 I DE +++LD ++R L R I Sbjct: 924 GAR-----IAFFDEPTSNLDAERRENLARAFRAIDV 954 >gi|125718367|ref|YP_001035500.1| structural maintenance of chromosome protein (chromosome segregation ATPase) [Streptococcus sanguinis SK36] gi|125498284|gb|ABN44950.1| Structural maintenance of chromosome protein (chromosome segregation ATPase), putative [Streptococcus sanguinis SK36] Length = 1178 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRTIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ A E + + + Y K + ++ L K + L ++ A L Sbjct: 239 EKLTKA-EEDLTNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKESQFIV 1140 >gi|90425031|ref|YP_533401.1| SMC protein-like [Rhodopseudomonas palustris BisB18] gi|90107045|gb|ABD89082.1| SMC protein-like [Rhodopseudomonas palustris BisB18] Length = 695 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 65/394 (16%), Positives = 124/394 (31%), Gaps = 68/394 (17%) Query: 5 IKIKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + I + I FR + + L T VG+N GKT +++A+ + R Sbjct: 1 MYISEIRIENFRLFGVGNDTFVLRLKPGLTALVGENDGGKTAVIDALRLVLGTR------ 54 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 ++ R+ + F + + ++ K T DR+ + + V E + Sbjct: 55 DQELIRVEATDFHQAPGGAQAEQICIRLTFKALTVHDRAAFAEYLTYLPGGDVTETALII 114 Query: 121 RISW-----------LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + +PS I +G + + + + R + D ER M Sbjct: 115 TWNARRNTKEGVSRRTLPS--EIRTGAAGDGPVLEGAARALLTATYLRPLRDAERAM--- 169 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 S S Q+ + +I V S S Sbjct: 170 ------SAGRGSRLS----QILQHTKEIKETGVAFDPKASPPADPAKLSVLGVGDYASFL 219 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD----------LIVDYCD 279 ++ L +E+ K L D ++ R + R D L + Sbjct: 220 FDGSAGIKEARKKLNDEFLKPL--SFANDLLNARIAVSGSRDDAVRLRQLLEKLELALSA 277 Query: 280 KAITIAHGSTGEQKVVLVG----IFLA-HARLISNTTGFAPILLLDEISAHLDEDKRNAL 334 T A + G +G +F+A L++ + P+LL++E AHL ++ L Sbjct: 278 SDDTDASYTRG------LGSNNLLFMACELLLLAAESDGFPLLLIEEPEAHLHPQRQLRL 331 Query: 335 FRIVTD---------IGSQIFMTGTDKSVFDSLN 359 + + QI +T ++ + Sbjct: 332 MSFLQEQADGVRADGQQIQILVTTHSPNLASDIR 365 >gi|327401278|ref|YP_004342117.1| chromosome segregation protein SMC [Archaeoglobus veneficus SNP6] gi|327316786|gb|AEA47402.1| chromosome segregation protein SMC [Archaeoglobus veneficus SNP6] Length = 1170 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 22/165 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRA 59 + IK + I F+++ + + F T+ G NG GK+NI+++I F + + R Sbjct: 1 MHIKKIVIKNFKSFGKKVEIPFYRGFTVISGPNGSGKSNIVDSILFCLGLSTSTKALRAE 60 Query: 60 SYADVT------RIGSPSFFSTFARVEGM---EGLADISIKLETRDDRSVRCLQINDV-- 108 D+ R G F + EG I+ ++ D IN Sbjct: 61 RLTDLVFNSNGKRSGEAEVSIIFDNSDSKLPFEGDVTITRRIRLTDRGHYSYYYINGKSC 120 Query: 109 ----VIRVVDE--LNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147 + R++ + ++ + + RI ++RR+ +D + Sbjct: 121 SLSEIQRLLSDAGIHGDAYNVIMQGDVTRITEMTPLQRRKIIDDI 165 >gi|164688566|ref|ZP_02212594.1| hypothetical protein CLOBAR_02211 [Clostridium bartlettii DSM 16795] gi|164602979|gb|EDQ96444.1| hypothetical protein CLOBAR_02211 [Clostridium bartlettii DSM 16795] Length = 1110 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 21/172 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++ + + F+ T VG NG GK+NI +A+ L + R Sbjct: 7 VHLKRLELKGFKSFPTKTEINFNEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 66 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ + ++ + +I T R+ R +ND R Sbjct: 67 LEDVIFAGTIDKKPMNYCEVALTIDNSDEKLNIDFSEVTIKRRAYRNGESGFFLNDKACR 126 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + D + K +D I S RR+ D R+ Sbjct: 127 LKDIKELLLDTGIGKDGYSIIEQGKVDEILSNNPANRRKVFDEACGISKYRY 178 >gi|330040360|ref|XP_003239874.1| structural maintenance of chromosomes 3 [Cryptomonas paramecium] gi|327206799|gb|AEA38976.1| structural maintenance of chromosomes 3 [Cryptomonas paramecium] Length = 1033 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57 + I + + F++Y +F G NG GKT++LEAI + + FR Sbjct: 1 MHIIEVKLFNFKSYRHYIFKKHLSPGINVFTGYNGSGKTSLLEAIGVIFINQKFR 55 >gi|197118682|ref|YP_002139109.1| DNA repair exonuclease SbcCD subunit C [Geobacter bemidjiensis Bem] gi|197088042|gb|ACH39313.1| DNA repair exonuclease SbcCD, C subunit, putative [Geobacter bemidjiensis Bem] Length = 987 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++I + + +++ + F + G NG GK+ I EAI + G Sbjct: 1 MRIISVQLKNIKSHRDKEIAFSPGINVLSGANGSGKSTIFEAIGYALFGVS 51 >gi|314936604|ref|ZP_07843951.1| SMC family, C- domain protein [Staphylococcus hominis subsp. hominis C80] gi|313655223|gb|EFS18968.1| SMC family, C- domain protein [Staphylococcus hominis subsp. hominis C80] Length = 1189 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 102/279 (36%), Gaps = 39/279 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K ++ F+++A + FD T VG NG GK+NI +AI L + R + Sbjct: 2 VYLKSIDTIGFKSFADRTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61 Query: 61 YADVTRIGSPSF-FSTFARVEGMEGLADISIKLET----------RDDRSVRCLQINDVV 109 D+ G+ +A V+ + +++E R S L + Sbjct: 62 MEDIIFSGAEHRQAQNYAEVQLKLDNSTRELQIEADDVIVTRRLYRSGESEYYLNNDRAR 121 Query: 110 IRVVDELN-----KHLRISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +R + EL S + +D I + ++RR+ ++ + Sbjct: 122 LRDITELFLDSGLGKEAFSIISQGRVDEILNAKPVDRRQIIEESAGVL------------ 169 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222 + + + L + S +E + +L RVE + A +S+ EY+Q + Sbjct: 170 KYKKRKTESLQKLGHTEDNLSRVEDILYDL-----EGRVEPLKAEASIAKEYLQLSKEME 224 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 H + +T ++D+ L E + + Sbjct: 225 HSDVVVTVHDINQYDEENRQLDERLNHLKSQQAEKEGQQ 263 >gi|118587505|ref|ZP_01544929.1| chromosome segregation SMC protein [Oenococcus oeni ATCC BAA-1163] gi|118431956|gb|EAV38698.1| chromosome segregation SMC protein [Oenococcus oeni ATCC BAA-1163] Length = 1184 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 28/225 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +K+K L I+ F+++A + F T VG NG GK+NI+EAI ++ +G R + Sbjct: 1 MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 ADV GS S ++ + +++ R R+ IN V R Sbjct: 61 MADVIFGGSKKRPALGRASVSMTIDNSDHYLHSAFDEVQISRRLYRNGDAEYLINGVKSR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ + +RR ++ + +++ + Sbjct: 121 LKDITDLFVDTGLGRESFSIINQGKVEAIFNAKAEDRRAIIEDVAGVFK--YKQNKNKSQ 178 Query: 164 RLMRGR----NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204 + NRLL S +E Q A+ + R + Sbjct: 179 NQLLQTQENLNRLLDIIKEISDRLQPLEKQ-ADEAEEFLSLRKQF 222 >gi|225856913|ref|YP_002738424.1| chromosome segregation protein SMC [Streptococcus pneumoniae P1031] gi|225724779|gb|ACO20631.1| chromosome segregation protein SMC [Streptococcus pneumoniae P1031] Length = 1179 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELTQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|328864918|gb|EGG13304.1| structural maintenance of chromosome protein [Dictyostelium fasciculatum] Length = 1153 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 92/305 (30%), Gaps = 39/305 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYAD 63 I+ +++ F + + F G+NG GK+ +L A+ + R AD Sbjct: 113 IESISVENFMCHRHFEIKFGPNVNFISGENGSGKSALLVALIICLGAKSGTTNRGHKLAD 172 Query: 64 VTRIGS-PSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVVIRVVDEL 116 + + + + + R +G E I I+ + + +V+ Sbjct: 173 LVKNDANQAIITVKLRNKGPEAHLPEEFGPSIIIERKISRSGGGGYKLKDHTGKKVISTK 232 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 L + + I + ++ ++ N LT Sbjct: 233 FSDLAVIL---ELFNIQIENP------MAILMQDTSREFLNTSRPQDKY----NLFLTAT 279 Query: 177 YFDSSWCSSI---------EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 D + E ++ + G+ I + + ALS + + Sbjct: 280 QLDQMKKDYLFINDQIKGSEQELDKKGIIIKEM-EKKVEALSKEFKDLQAVVDLEQKVQH 338 Query: 228 LTGFLDGKF----DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 L L + +Q+ K A+ + + K + + IG + + D DK Sbjct: 339 LKEQLAWSYVFGVEQTIVKKKAALAQIIQE--KNNIQNETQGIGQQINAITNDMADKRKK 396 Query: 284 IAHGS 288 I S Sbjct: 397 IEELS 401 >gi|169338111|ref|ZP_02863218.1| chromosome partition protein smc [Clostridium botulinum C str. Eklund] gi|169294129|gb|EDS76262.1| chromosome partition protein smc [Clostridium botulinum C str. Eklund] Length = 377 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 102/278 (36%), Gaps = 32/278 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L I F+++A LVF T VG NG GK+NIL+A+ ++ + R Sbjct: 1 MFLKSLEIRGFKSFADKTELVFKKGITAIVGPNGSGKSNILDAVKWVLGEQSVKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ + I + + R RS IN R Sbjct: 61 MQDVIFSGTEYRKPVGLAQVTLVLDNSDEELPIDYSEVTIMRRLFRSGESEYYINSTKCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K ++ + SG ERR L+ + + R + E Sbjct: 121 LKDIQELFMDTGIGKEGYSIIGQGKIEALLSGKPEERRSLLEEAAGIVK--FKTRKQEAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--VEMINAL-SSLIMEYVQKEN 220 + + L + E ++ L + + AR +E+ L + + + Sbjct: 179 KRLENTENNLQRIN---DIFGTYEERLDPLKAESDKARNFLEISKKLKEKEVTLILNNID 235 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 K++L + K +++ LK+ + K + +D Sbjct: 236 RCKEKINL---VKEKIEETNSKLKDAFNDKNIHKKNLD 270 >gi|294495715|ref|YP_003542208.1| ATP-dependent endonuclease [Methanohalophilus mahii DSM 5219] gi|292666714|gb|ADE36563.1| ATP-dependent endonuclease of the OLD family [Methanohalophilus mahii DSM 5219] Length = 685 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 + + ++I +R+ L L F + VG N GK+NI++AI L + Sbjct: 7 DLYLSKIHIENYRSIKELDLDFKKGKNVIVGKNNSGKSNIIKAIDLLLGEKS 58 >gi|159027952|emb|CAO87115.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 438 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + F++Y L T +G N GK+N LEAI LS + + D+ R Sbjct: 2 LTSLTLRNFKSYQEATLSLAP-ITFLIGANASGKSNALEAIRLLSWLA--KGSRLDDIER 58 >gi|332159251|ref|YP_004424530.1| chromosome segregation protein [Pyrococcus sp. NA2] gi|331034714|gb|AEC52526.1| chromosome segregation protein [Pyrococcus sp. NA2] Length = 879 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 26/43 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 ++I+ + + FR++ + F + +G NG GK+++L+AI Sbjct: 1 MRIERVRVENFRSHKISEIEFKPGINLIIGQNGAGKSSLLDAI 43 Score = 40.7 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 ++ L V Y ++ S GE+ + + LA + + G +L+LDE + LDE Sbjct: 771 NKIKLFVVYDGVERPLSFLSGGERIALGLAFRLALSMYL---IGRINLLILDEPTPFLDE 827 Query: 329 DKRNALFRIVT---DIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370 ++R L I+ SQ+ + D+ + D+ + +R+ + Sbjct: 828 ERRRKLIEIMERHLKKISQVIIVSHDEELKDA-ADHVIRIRLEDG 871 >gi|218905310|ref|YP_002453144.1| DNA repair protein RecN [Bacillus cereus AH820] gi|218536540|gb|ACK88938.1| DNA repair protein RecN [Bacillus cereus AH820] Length = 579 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 117/314 (37%), Gaps = 72/314 (22%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 57 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD---SMSRRTLIGPHRSD 272 ++ N +L ++ F++ + AL + Y DG+ +D S + H + Sbjct: 209 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVRSAMGQMESITHLDE 263 Query: 273 LIVDYCDKAITIAH 286 + + D + Sbjct: 264 VYQENHDSXANSYY 277 >gi|160888201|ref|ZP_02069204.1| hypothetical protein BACUNI_00609 [Bacteroides uniformis ATCC 8492] gi|156862336|gb|EDO55767.1| hypothetical protein BACUNI_00609 [Bacteroides uniformis ATCC 8492] Length = 691 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 25/46 (54%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 + I +++ +RN+ + +F+ +G+N GKTN+ AI + Sbjct: 1 MYISKVSLVNYRNFENAFFLFNKGINTIIGENASGKTNLFRAIRLI 46 Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 88/269 (32%), Gaps = 44/269 (16%) Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFE- 163 ND ++ EL MD G + + + R V F R + DF+ Sbjct: 161 NDKNVQR--ELMGDFDNVIFNFDMDESKYGGRIPHQLSISREVSFTFIKALRDVVSDFQD 218 Query: 164 -------RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216 L++ ++ + E F + + + +++ + N +S I E V Sbjct: 219 NRKNPLLTLLKNKSEDIKEEDFKPISIKVDD--LNKSIEELDDI-QMITNNISETIKEAV 275 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL-IGPHRSDLIV 275 P LS+ L + ++ +LK LF G + + ++LI Sbjct: 276 GTTYSPS-SLSIKSNLPSEAEKLLQSLK------LFIGEPEEDYEGGIHELSLGGANLIF 328 Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 + + L + A LL++E AH+ + ALF Sbjct: 329 ---------------------LTLKLLEYKYRKEKDKIANFLLIEEPEAHIHTHIQKALF 367 Query: 336 RIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 + +QI + T + ++ + Sbjct: 368 DKLNYTDTQIIYS-THSTHISEVSNISSM 395 >gi|322419444|ref|YP_004198667.1| SMC domain-containing protein [Geobacter sp. M18] gi|320125831|gb|ADW13391.1| SMC domain protein [Geobacter sp. M18] Length = 987 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 ++I +++ +++ L F + G NG GK+ I EAI + G Sbjct: 1 MRIVSVHLKNIKSHRDKELTFAPGINVLSGANGSGKSTIFEAIGYALFGVS 51 Score = 38.0 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 11/163 (6%) Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 S A + + +I+ + I L + K + +++ L +F + Sbjct: 803 SRLEGETAALRAVAAEIDKK-LAAIEELKEQAN--LVKFLRNQVFKNVSAQLSERFREEI 859 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + + + + + +VD + + S G+ +V + Sbjct: 860 SFRADRIYRSICES-DEELYWGENYQVVLKD--MVDGAVRERSDDQLSGGQMMSAVVALR 916 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 LA + I I DE +++LD ++R L + I Sbjct: 917 LALLQTIGAR-----IAFFDEPTSNLDAERRENLAKAFRAIDV 954 >gi|222097620|ref|YP_002531677.1| DNA repair protein recn [Bacillus cereus Q1] gi|229140908|ref|ZP_04269452.1| DNA repair protein recN [Bacillus cereus BDRD-ST26] gi|229198301|ref|ZP_04325008.1| DNA repair protein recN [Bacillus cereus m1293] gi|221241678|gb|ACM14388.1| DNA repair protein RecN [Bacillus cereus Q1] gi|228585180|gb|EEK43291.1| DNA repair protein recN [Bacillus cereus m1293] gi|228642484|gb|EEK98771.1| DNA repair protein recN [Bacillus cereus BDRD-ST26] Length = 583 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 61/282 (21%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 D+E+L + L S E QMA R+++I I + K Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKI 212 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + L+ F++ + AL + Y DG+ +D++ Sbjct: 213 D-EENDLTEERLQISNFEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|206976260|ref|ZP_03237168.1| DNA repair protein RecN [Bacillus cereus H3081.97] gi|217961664|ref|YP_002340234.1| DNA repair protein RecN [Bacillus cereus AH187] gi|206745456|gb|EDZ56855.1| DNA repair protein RecN [Bacillus cereus H3081.97] gi|217064009|gb|ACJ78259.1| DNA repair protein RecN [Bacillus cereus AH187] Length = 579 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 61/282 (21%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 57 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 D+E+L + L S E QMA R+++I I + K Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKI 208 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + L+ F++ + AL + Y DG+ +D++ Sbjct: 209 D-EENDLTEERLQISNFEKIYKALGDAYRSLSADGQGLDNVR 249 >gi|322705493|gb|EFY97078.1| structural maintenance of chromosome complex subunit SmcA [Metarhizium anisopliae ARSEF 23] Length = 1119 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 16/213 (7%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61 I +++ F Y + +G NG GK++++ AI L G R S Sbjct: 76 AIVRVSVQNFVTYEKAEFFPGPHLNMVIGPNGTGKSSLVCAIC-LGLGYSPKHLGRAGSV 134 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119 + + G + ++ IK++ R +++ + +N + + EL K Sbjct: 135 KEFVKHGKDIATIEIELQKKPRDRSNYVIKVQIRREQNSQKWWLNGKETSHKKIQELMKS 194 Query: 120 LRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDFERLMRGRNRLL 173 ++I +P R+ + L + A P + + + + L Sbjct: 195 MKIQVDNLCQFLPQD-RVVEFAACTPVDLLHETLRAAAPEEMLLWQSQLQEMHKEKKGLA 253 Query: 174 TEGYFDSSWCSSIE--AQMAELGVKINIARVEM 204 + D +E Q + V R E+ Sbjct: 254 DAVHSDVDALRILENRQQGLQADVDRIREREEI 286 >gi|169831439|ref|YP_001717421.1| metallophosphoesterase [Candidatus Desulforudis audaxviator MP104C] gi|169638283|gb|ACA59789.1| metallophosphoesterase [Candidatus Desulforudis audaxviator MP104C] Length = 695 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 4/85 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 + L + F+++ + +G++G GK+ I+ A+ +L R + + Sbjct: 327 HLTHLVLENFQSHLHTEFELAPGLNVILGESGQGKSAIVRALRWLLC----REPARDEYV 382 Query: 66 RIGSPSFFSTFARVEGMEGLADISI 90 R G+P T +G + + + Sbjct: 383 RAGAPGCRVTAVCGDGRRLVREHRL 407 >gi|73667909|ref|YP_303924.1| chromosome segregation protein [Methanosarcina barkeri str. Fusaro] gi|72395071|gb|AAZ69344.1| DNA repair protein RAD50 [Methanosarcina barkeri str. Fusaro] Length = 1074 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 26/167 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-----RGFRRA 59 +K+K L+I R+Y L F+ T+ G NG GK+++LEA G + F Sbjct: 1 MKLKNLHIENIRSYKKLDFTFEDGVTVISGVNGSGKSSLLEACFMGLFGSKILSKDF--- 57 Query: 60 SYADVTRIGSPSFFSTFARVE-GMEGLADISIKLETRDD---RSVRCLQINDVVI----- 110 ADV G+ + G + L + + + ++ + S L N I Sbjct: 58 VLADVIFKGAENAKINLGFEHLGQDYLIEQAFRYSSKSENASNSKCVLYANGESIVDQAT 117 Query: 111 RVVDELNKHLRI---------SWLVPSMDRIFSGLSMERRRFLDRMV 148 R +E+ L + +D + + +R+R +D ++ Sbjct: 118 RTYEEVCSLLNMDEEAYRNCAYIRQGEIDVLINAKPKDRQRMIDGLL 164 >gi|328957312|ref|YP_004374698.1| chromosome condensation and segregation SMC ATPase [Carnobacterium sp. 17-4] gi|328673636|gb|AEB29682.1| chromosome condensation and segregation SMC ATPase [Carnobacterium sp. 17-4] Length = 1190 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 +++K ++I+ F+++A + F T VG NG GK+NI EAI L + R Sbjct: 1 MQLKRIDIAGFKSFADKTTIEFHDGVTAVVGPNGSGKSNITEAIRWVLGEQSAKNLRGGR 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 DV GS + A V + D + LE + R L N Sbjct: 61 MNDVIFSGSDTRKPVNLAEVTLILENEDHFLPLEFSEISITRRLHRNGESEFYLNKQACR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLD 145 + ++ S L I S ERR + Sbjct: 121 LKDIVDLFMDSGLGKESFSIISQGKVESIFNSKPEERRAIFE 162 >gi|324328088|gb|ADY23348.1| DNA repair protein RecN [Bacillus thuringiensis serovar finitimus YBT-020] Length = 583 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 61/282 (21%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 D+E+L + L S E QMA R+++I I + K Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKI 212 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + L+ F++ + AL + Y DG+ +D++ Sbjct: 213 D-EENDLTEERLQISNFEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|323351216|ref|ZP_08086872.1| cell division protein Smc [Streptococcus sanguinis VMC66] gi|322122440|gb|EFX94151.1| cell division protein Smc [Streptococcus sanguinis VMC66] Length = 1178 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRVIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ A E + + + Y K + ++ L K + L ++ A L Sbjct: 239 EKLIKA-EEDLTNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 38.0 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|309356248|emb|CAP37487.2| hypothetical protein CBG_20484 [Caenorhabditis briggsae AF16] Length = 673 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 1 MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57 + + + L I F++Y + ++ T +G NG GK+N+++AISF+ R R Sbjct: 46 LPGKGHLHTLEIENFKSYKGKHIIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPTSLR 105 Query: 58 RASYADVTRIGSP 70 Y D+ G+P Sbjct: 106 VKKYTDLI-HGAP 117 >gi|228947891|ref|ZP_04110178.1| DNA repair protein recN [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811878|gb|EEM58212.1| DNA repair protein recN [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 583 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ N +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|241202955|ref|YP_002974051.1| hypothetical protein Rleg_0201 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856845|gb|ACS54512.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 442 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 27/42 (64%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46 +++ L+++ FR +A+ + F + T+ V NG GKT +L+A Sbjct: 3 LRLDKLSLTNFRCFANCEIEFHSGLTVLVAQNGSGKTAVLDA 44 >gi|229186417|ref|ZP_04313581.1| DNA repair protein recN [Bacillus cereus BGSC 6E1] gi|228597044|gb|EEK54700.1| DNA repair protein recN [Bacillus cereus BGSC 6E1] Length = 583 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ N +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|255655260|ref|ZP_05400669.1| chromosome partition protein [Clostridium difficile QCD-23m63] gi|296451245|ref|ZP_06892985.1| chromosome segregation protein Smc [Clostridium difficile NAP08] gi|296880403|ref|ZP_06904366.1| chromosome segregation protein Smc [Clostridium difficile NAP07] gi|296259851|gb|EFH06706.1| chromosome segregation protein Smc [Clostridium difficile NAP08] gi|296428644|gb|EFH14528.1| chromosome segregation protein Smc [Clostridium difficile NAP07] Length = 1184 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 91/268 (33%), Gaps = 33/268 (12%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++ ++F T VG NG GK+NI +A+ L + R Sbjct: 1 MYLKRLELKGFKSFPVKTDIIFKEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ ++ E ++ T R+ R +N+ R Sbjct: 61 LEDVIFAGTDTKKPMNYCEVALTIDNSENQLELDFTEVTIRRRAYRNGESEFFLNNKSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D I S + RR+ D ++ Sbjct: 121 LKDIKEVFLDTGIGKDGYSIIEQGKVDEILSNNPLSRRKVFDEACGISK-------YRYK 173 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKIN--IARVEMINALSS-LIMEYVQK 218 + RN T+ + IE Q+ L + +E+ L + ++++ Sbjct: 174 KQEAERNLSNTKENLERIDDIYIEIENQLKPLFNQQTKAKKYLEISEKLKILEVNSFIRE 233 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEE 246 +LS ++ +E+ Sbjct: 234 IEGIEKELSEVNEHRKVIEKELNEKEEQ 261 >gi|196046341|ref|ZP_03113567.1| DNA repair protein RecN [Bacillus cereus 03BB108] gi|225866156|ref|YP_002751534.1| DNA repair protein RecN [Bacillus cereus 03BB102] gi|196022811|gb|EDX61492.1| DNA repair protein RecN [Bacillus cereus 03BB108] gi|225790605|gb|ACO30822.1| DNA repair protein RecN [Bacillus cereus 03BB102] Length = 579 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 57 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ N +L ++ F++ + AL + Y DG+ +D++ Sbjct: 209 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249 >gi|196034817|ref|ZP_03102224.1| DNA repair protein RecN [Bacillus cereus W] gi|196041535|ref|ZP_03108827.1| DNA repair protein RecN [Bacillus cereus NVH0597-99] gi|301055667|ref|YP_003793878.1| DNA repair protein [Bacillus anthracis CI] gi|195992356|gb|EDX56317.1| DNA repair protein RecN [Bacillus cereus W] gi|196027523|gb|EDX66138.1| DNA repair protein RecN [Bacillus cereus NVH0597-99] gi|300377836|gb|ADK06740.1| DNA repair protein [Bacillus cereus biovar anthracis str. CI] Length = 579 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 57 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ N +L ++ F++ + AL + Y DG+ +D++ Sbjct: 209 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249 >gi|52141322|ref|YP_085507.1| DNA repair protein [Bacillus cereus E33L] gi|228916810|ref|ZP_04080375.1| DNA repair protein recN [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929220|ref|ZP_04092247.1| DNA repair protein recN [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935497|ref|ZP_04098315.1| DNA repair protein recN [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229123694|ref|ZP_04252889.1| DNA repair protein recN [Bacillus cereus 95/8201] gi|254721773|ref|ZP_05183562.1| DNA repair protein [Bacillus anthracis str. A1055] gi|51974791|gb|AAU16341.1| DNA repair protein [Bacillus cereus E33L] gi|228659829|gb|EEL15474.1| DNA repair protein recN [Bacillus cereus 95/8201] gi|228824249|gb|EEM70063.1| DNA repair protein recN [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830510|gb|EEM76120.1| DNA repair protein recN [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842997|gb|EEM88080.1| DNA repair protein recN [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 583 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ N +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|331084977|ref|ZP_08334064.1| chromosome segregation protein SMC [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408677|gb|EGG88142.1| chromosome segregation protein SMC [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1186 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 100/283 (35%), Gaps = 31/283 (10%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++A+ L F T VG NG GK+N+ +A+ ++ + R S Sbjct: 1 MYLKSIEVQGFKSFANKILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + + T + R IN R Sbjct: 61 MQDVIFSGTENRRPLSYASVAITLDNADHQLPVDYHEVTVTRKLYRSGESEYLINGTACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ + Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKYLS-VR 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQK 218 +L R L+ S +E Q+ L +I + + E + + Sbjct: 180 KLEDERQNLVRVN----DILSELEKQVEPLRRQSETARIYLKKKEELKIYDINMFLMDTI 235 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 I+ + F D + + K+E K ++ ++ Sbjct: 236 RLKEQIETAQRSFDDANRELTEAKEKQEALKLAYEKQEQKLAE 278 Score = 36.8 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 47/318 (14%), Positives = 104/318 (32%), Gaps = 37/318 (11%) Query: 56 FRRASYADVTRIGSPSFFSTFARVEGMEGLADISI------------KLETRDDRSVRCL 103 FRR+ + + G + A EG +I +L + ++ + Sbjct: 841 FRRSHEEETLQAGKEHAANEIADREGQILKLRQTIVQLSEELHAAKEELASYMEQKEKLQ 900 Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + + + +EL++HL +D+ L ++ ++ ++ + + Sbjct: 901 LVQKEIFQSREELSRHL------SDLDKETFRLDSKKTALEEQTEKLMNYMWEEYELTYS 954 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + R L + ++ ++ LG A + N L Q ++ Sbjct: 955 HALEMRKEELLDPVLLKKEIQRLKTEIKALGTVNVNAIEDYKNVLERYEFLKGQHDDLVE 1014 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAK--KLFDGRKMDSMSRR--TLIGPHRSDLI---VD 276 + +L ++ +E++AK K FD TL D++ + Sbjct: 1015 AEKTLVQIIEELDIAMRKQFEEQFAKIAKEFDSVFKQLFGGGKGTLELLEDEDILEAGIR 1074 Query: 277 YCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 + S GE+ + + + A +P LLDEI A LD+ Sbjct: 1075 IIAQPPGKKLQNMMQLSGGEKALTAIALLFA-----IQNLKPSPFCLLDEIEAALDDSNV 1129 Query: 332 NALFRIVTDI--GSQIFM 347 + + + +Q + Sbjct: 1130 TRFAKYLHKLTKHTQFIV 1147 >gi|301299299|ref|ZP_07205585.1| chromosome segregation protein SMC [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853143|gb|EFK80741.1| chromosome segregation protein SMC [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1178 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +KIK L ++ F+++A+ + F T VG NG GK+NI EA+ ++ + R + Sbjct: 1 MKIKSLTLNGFKSFANKTIINFQDGLTGIVGPNGSGKSNITEALRWVLGEQSVKNLRGSK 60 Query: 61 YADVTRIGSPSFFST-FARV-------EGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + + A V +G I++ R RS IN+ +R Sbjct: 61 MPDIIFAGSDTRAALNRAEVTLVLDNEDGYLYNQPNEIRITRRIFRSGDSEFFINEKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ +RR ++ Sbjct: 121 LKDVVDLFIDTGLGRESFSIISQGRVESIFNSKPQDRRILIE 162 >gi|90961603|ref|YP_535519.1| chromosome partition protein [Lactobacillus salivarius UCC118] gi|90820797|gb|ABD99436.1| Chromosome partition protein [Lactobacillus salivarius UCC118] Length = 1178 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +KIK L ++ F+++A+ + F T VG NG GK+NI EA+ ++ + R + Sbjct: 1 MKIKSLTLNGFKSFANKTIINFQDGLTGIVGPNGSGKSNITEALRWVLGEQSVKNLRGSK 60 Query: 61 YADVTRIGSPSFFST-FARV-------EGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + + A V +G I++ R RS IN+ +R Sbjct: 61 MPDIIFAGSDTRAALNRAEVTLVLDNEDGYLYNQPNEIRITRRIFRSGDSEFFINEKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ +RR ++ Sbjct: 121 LKDVVDLFIDTGLGRESFSIISQGRVESIFNSKPQDRRILIE 162 >gi|150402566|ref|YP_001329860.1| chromosome segregation protein SMC [Methanococcus maripaludis C7] gi|150033596|gb|ABR65709.1| chromosome segregation protein SMC [Methanococcus maripaludis C7] Length = 1189 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 + +++ F+++ + +L T +G NG GK+N ++ I F+ + + R + Sbjct: 4 LSEIHMKNFKSFKNSKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 + + +FA V D + L++ R ++IN Sbjct: 64 LITYHNGKR-ESFAEVTLFFDNKDRKMPLDSDKVGISRKVKING 106 >gi|229093233|ref|ZP_04224351.1| DNA repair protein recN [Bacillus cereus Rock3-42] gi|228690207|gb|EEL44001.1| DNA repair protein recN [Bacillus cereus Rock3-42] Length = 583 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ N +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|30264249|ref|NP_846626.1| DNA repair protein RecN [Bacillus anthracis str. Ames] gi|47778289|ref|YP_021041.2| DNA repair protein RecN [Bacillus anthracis str. 'Ames Ancestor'] gi|49187076|ref|YP_030328.1| DNA repair protein RecN [Bacillus anthracis str. Sterne] gi|165873119|ref|ZP_02217736.1| DNA repair protein RecN [Bacillus anthracis str. A0488] gi|167633676|ref|ZP_02392000.1| DNA repair protein RecN [Bacillus anthracis str. A0442] gi|167641898|ref|ZP_02400136.1| DNA repair protein RecN [Bacillus anthracis str. A0193] gi|170709221|ref|ZP_02899644.1| DNA repair protein RecN [Bacillus anthracis str. A0389] gi|177654841|ref|ZP_02936598.1| DNA repair protein RecN [Bacillus anthracis str. A0174] gi|190566084|ref|ZP_03019003.1| DNA repair protein RecN [Bacillus anthracis Tsiankovskii-I] gi|227816950|ref|YP_002816959.1| DNA repair protein RecN [Bacillus anthracis str. CDC 684] gi|229602126|ref|YP_002868468.1| DNA repair protein RecN [Bacillus anthracis str. A0248] gi|254683938|ref|ZP_05147798.1| DNA repair protein RecN [Bacillus anthracis str. CNEVA-9066] gi|254736286|ref|ZP_05193992.1| DNA repair protein RecN [Bacillus anthracis str. Western North America USA6153] gi|254741324|ref|ZP_05199011.1| DNA repair protein RecN [Bacillus anthracis str. Kruger B] gi|254754042|ref|ZP_05206077.1| DNA repair protein RecN [Bacillus anthracis str. Vollum] gi|254757913|ref|ZP_05209940.1| DNA repair protein RecN [Bacillus anthracis str. Australia 94] gi|30258894|gb|AAP28112.1| DNA repair protein RecN [Bacillus anthracis str. Ames] gi|47551994|gb|AAT33516.2| DNA repair protein RecN [Bacillus anthracis str. 'Ames Ancestor'] gi|49181003|gb|AAT56379.1| DNA repair protein RecN [Bacillus anthracis str. Sterne] gi|164711133|gb|EDR16693.1| DNA repair protein RecN [Bacillus anthracis str. A0488] gi|167510141|gb|EDR85549.1| DNA repair protein RecN [Bacillus anthracis str. A0193] gi|167531082|gb|EDR93769.1| DNA repair protein RecN [Bacillus anthracis str. A0442] gi|170125883|gb|EDS94787.1| DNA repair protein RecN [Bacillus anthracis str. A0389] gi|172080502|gb|EDT65588.1| DNA repair protein RecN [Bacillus anthracis str. A0174] gi|190563003|gb|EDV16969.1| DNA repair protein RecN [Bacillus anthracis Tsiankovskii-I] gi|227004801|gb|ACP14544.1| DNA repair protein RecN [Bacillus anthracis str. CDC 684] gi|229266534|gb|ACQ48171.1| DNA repair protein RecN [Bacillus anthracis str. A0248] Length = 579 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 57 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ N +L ++ F++ + AL + Y DG+ +D++ Sbjct: 209 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249 >gi|320589019|gb|EFX01487.1| cohesin complex subunit [Grosmannia clavigera kw1407] Length = 1925 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 54/307 (17%), Positives = 106/307 (34%), Gaps = 62/307 (20%) Query: 2 TNRI-KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--F 56 ++ K+ L + F++Y + L D+ T VG NG GK+N ++AISF+ + Sbjct: 152 AAKMGKLNRLELFNFKSYKGHHVLLFGDSYFTSVVGPNGSGKSNSMDAISFVLGIKSSHL 211 Query: 57 RRASYADVT--------------------------------RIGSPSFFSTFARVEGMEG 84 R + D+ R G + + + Sbjct: 212 RSSHLKDLVYRGRVMETSKPSEDAPETNETGGDALEDDEGGRSGRGDPKTAWVMAVYEDD 271 Query: 85 LADISIKLETRDDRSVRCLQINDVVIRVVDE---------LNKHLRISWLVPSMDRIFSG 135 D + ++ +IN+ V+ D L K ++ I S Sbjct: 272 AGDTHRWKRSITNQGSSEYRINNRVVTAQDYNQALENENILIKARNFLVFQGDVEAIASQ 331 Query: 136 LSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 S + R ++++ ++D P + R + E+ + +N LT ++ + Q AE Sbjct: 332 SSQDLTRLIEQISGSLDFKPEYERLKAEAEQAIENQNFHLTRRRAINAEIKQYQEQKAEA 391 Query: 194 GV---KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 K+N ++N + S I Y + + +++ Q E+ +K Sbjct: 392 ESFQRKLNERDEAIVNQMLSKIHHYQRIMDDSSVQI-----------QDHQENLAEFRRK 440 Query: 251 LFDGRKM 257 L K Sbjct: 441 LHSAEKQ 447 >gi|255591216|ref|XP_002535467.1| structural maintenance of chromosomes smc, bacterial, putative [Ricinus communis] gi|223523015|gb|EEF26914.1| structural maintenance of chromosomes smc, bacterial, putative [Ricinus communis] Length = 333 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|15232802|ref|NP_190330.1| ATSMC2; transporter [Arabidopsis thaliana] gi|75337454|sp|Q9SN90|SMC22_ARATH RecName: Full=Structural maintenance of chromosomes protein 2-2; Short=AtSMC2-2; AltName: Full=Chromosome-associated protein E-2; Short=AtCAP-E2 gi|6522529|emb|CAB61972.1| chromosome assembly protein homolog [Arabidopsis thaliana] gi|332644763|gb|AEE78284.1| structural maintenance of chromosomes protein 2-2 [Arabidopsis thaliana] Length = 1171 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 18/125 (14%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA+ +V FD G NG GK+NIL++I F ++ + R A Sbjct: 1 MHIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G V G E ++I++ + + L IN Sbjct: 61 NLQELVYKQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYL-ING 119 Query: 108 VVIRV 112 + + Sbjct: 120 KLAQP 124 >gi|15901108|ref|NP_345712.1| hypothetical protein SP_1247 [Streptococcus pneumoniae TIGR4] gi|111658430|ref|ZP_01409109.1| hypothetical protein SpneT_02000401 [Streptococcus pneumoniae TIGR4] gi|14972729|gb|AAK75352.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] Length = 1179 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDIIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHVYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELTQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|268319231|ref|YP_003292887.1| chromosome partitioning protein Smc [Lactobacillus johnsonii FI9785] gi|262397606|emb|CAX66620.1| chromosome partitioning protein Smc [Lactobacillus johnsonii FI9785] Length = 1186 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 48/267 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + ++ L ++ F+++A + F+ T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116 DV GS A VE + D + + + R + N +++ Sbjct: 61 MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLAYDNDEVVVTRKILRNGESDYLLNHHPVR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K +R ++ M D I + +RR +F E Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ A + + +++ L I ++ + Sbjct: 176 IALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKK 250 LD K Q E ++ Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEE 240 >gi|268679582|ref|YP_003304013.1| SMC domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617613|gb|ACZ11978.1| SMC domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 789 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L++ F+ Y+S + F +G NG GK+ + EAI + R + +V Sbjct: 1 MILSKLHLENFKRYSSFDIEFGEGLIGIIGKNGSGKSTLFEAI-LFALYGELRNKKFKEV 59 Query: 65 TRIGSPSFFSTFARVE 80 R + + VE Sbjct: 60 IR-NASASDKDAVVVE 74 Score = 37.2 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 78/202 (38%), Gaps = 23/202 (11%) Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---AL 208 +P+H + +++ L + + S S ++ ++A+ +I + + N L Sbjct: 579 EPKHTAKQSEYDELQKQK-------EKQYSVISELKEKIAKNEGEIKTLQNALENNDIQL 631 Query: 209 SSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 + + +++ IKLSL+ F L+ K + + + G + Sbjct: 632 KKVQSKKDDLQDYEKIKLSLSEFKTKLNSKIAPRISQIASQMYATITKG-------KYQY 684 Query: 266 IGPHRS-DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI--LLLDEI 322 I + D + K I S GE + + + +A ++ +S G + + L DE+ Sbjct: 685 IEVNNDFDFFIYDEGKCYPIERFSGGEIDLANLVLRIAISKTLSELNGASSVGFLAFDEV 744 Query: 323 SAHLDEDKRNALFRIVTDIGSQ 344 DE++R + I Q Sbjct: 745 FGSQDENRRMEILEAFHTIKEQ 766 >gi|283798075|ref|ZP_06347228.1| SMC family protein [Clostridium sp. M62/1] gi|291074217|gb|EFE11581.1| SMC family protein [Clostridium sp. M62/1] Length = 1195 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 22/191 (11%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I F+++A+ L F T VG NG GK+N+ +A+ ++ + R + Sbjct: 1 MYLKSIEIQGFKSFANKILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ F ++ IS T R R +IN R Sbjct: 61 MQDVIFSGTEIRKPQGFAYVAITLDNSNHRLPISYDQVTVSRRLYRSGESEYRINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +DRI SG ERR D + + RR++I Sbjct: 121 LKDIQELFYDTGIGKEGYSIIGQGQIDRILSGRPEERRELFDEAAGIVKFK-RRKLIAQR 179 Query: 164 RLMRGRNRLLT 174 +LM L+ Sbjct: 180 KLMDEEQNLVR 190 >gi|222529160|ref|YP_002573042.1| chromosome segregation protein SMC [Caldicellulosiruptor bescii DSM 6725] gi|222456007|gb|ACM60269.1| chromosome segregation protein SMC [Caldicellulosiruptor bescii DSM 6725] Length = 1177 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 108/311 (34%), Gaps = 37/311 (11%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + IK+L I F+++ R+ F+ T VG NG GK+NI +AI + + R A Sbjct: 1 MYIKWLEIYGFKSFCEKTRIEFEKGITAIVGPNGCGKSNITDAIRWALGEQSLKLLRAAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ F + G+ I + + R RS IN + R Sbjct: 61 QEDLIFAGTEKRKSQGFAEVSICFDNSSGVLPIDYQEVVITRRLFRSGESEFFINKIPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + +ER R + ++R+ + E Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVERYRIFEEACGITKYKYRKE--ETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R ++ + Q+ E+ + A + + + ++ Sbjct: 179 RKLK---ATEENIQRLQDVIFELSTQLEEIKTDVEKA--------KTYLQINQKLQSLKK 227 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 K L G+ F +++ ++L + + R +++ L +D + + Sbjct: 228 EKYVYEYNLTGRRYHDFLTKEKQLNEELEKLIQ---LRRELEESINQNKLQMDLLTQEVE 284 Query: 284 IAHGSTGEQKV 294 S E K Sbjct: 285 KTRLSYDELKS 295 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 35/171 (20%) Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K R++ + + + + + L + F ++F +K +++ F+ Sbjct: 989 EKRLQERMQFLQKQIEDLQKTT--DELKRLISHLEKNMKEIFLENFEKIKSLFSEIFFE- 1045 Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAI--------------TIAHGSTGEQKVVLVGIF 300 L G DL + D + I S GE+ +V + + Sbjct: 1046 ----------LFGGGSCDLKLIGQDGELGVDIDVKPPGKKLQNINLLSGGEKALVAIALL 1095 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348 A T + + +LDEI + LDE + + ++ +Q I +T Sbjct: 1096 FAFL-----TFKGSLLCILDEIDSSLDEANVQRFAQYIKNLNNQSQIIIVT 1141 >gi|219851402|ref|YP_002465834.1| chromosome segregation protein SMC [Methanosphaerula palustris E1-9c] gi|219545661|gb|ACL16111.1| chromosome segregation protein SMC [Methanosphaerula palustris E1-9c] Length = 1146 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 52/151 (34%), Gaps = 10/151 (6%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK L I F+++ + F T+ G NG GK+NI++AI F LS R R Sbjct: 1 MFIKELEIDNFKSFGRKTTIPFFEGFTVVSGPNGSGKSNIIDAILFVLALSSSRNLRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL---- 116 D+ + S + A IK S + V Sbjct: 61 LTDLINLNSNRNTAEVALTFSDGTTIRRKIKRTAAGYYSYNYMNNRLCKQSEVSAYLADH 120 Query: 117 --NKHLRISWLVPSMDRIFSGLSMERRRFLD 145 H + + RI ERRR LD Sbjct: 121 GIIPHGYNVVMQGDITRIMEMSDGERRRILD 151 >gi|302389626|ref|YP_003825447.1| chromosome segregation protein SMC [Thermosediminibacter oceani DSM 16646] gi|302200254|gb|ADL07824.1| chromosome segregation protein SMC [Thermosediminibacter oceani DSM 16646] Length = 1185 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 21/171 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K + + F+++A + + F VG NG GK+NI +AI ++ + R + Sbjct: 1 MYLKRVELQGFKSFADRIEIEFQPGINAIVGPNGSGKSNITDAIRWVLGEQSIKTLRGSK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV GS ++ + L + I + R RS +N V R Sbjct: 61 LEDVIFAGSHGRKPMGMAEVSIILDNSDHLLPLEYSEICITRRVFRSGESEFYLNKVPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154 + D + K +D ERR + + R Sbjct: 121 LRDIQELFMDTGIGKDGYSIISQGQVDEFLISRPEERRMIFEETAGIMKHR 171 >gi|229174851|ref|ZP_04302371.1| DNA repair protein recN [Bacillus cereus MM3] gi|228608519|gb|EEK65821.1| DNA repair protein recN [Bacillus cereus MM3] Length = 583 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 61/282 (21%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V + ++ Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGDRIVKQLG-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 D+E+L + L S E QMA R+++I I + K Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEISKADLKM 212 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + I+L+ F++ + AL + Y DG+ +D++ Sbjct: 213 D-EEIELTEERLQISNFEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|227890690|ref|ZP_04008495.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus salivarius ATCC 11741] gi|227867628|gb|EEJ75049.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus salivarius ATCC 11741] Length = 1178 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +KIK L ++ F+++A+ + F T VG NG GK+NI EA+ ++ + R + Sbjct: 1 MKIKSLTLNGFKSFANKTIINFQDGLTGIVGPNGSGKSNITEALRWVLGEQSVKNLRGSK 60 Query: 61 YADVTRIGSPSFFST-FARV-------EGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + + A V +G I++ R RS IN+ +R Sbjct: 61 MPDIIFAGSDTRAALNRAEVTLVLDNEDGYLYNQPNEIRITRRIFRSGDSEFFINEKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ +RR ++ Sbjct: 121 LKDVVDLFIDTGLGRESFSIISQGRVESIFNSKPQDRRILIE 162 >gi|327389482|gb|EGE87827.1| chromosome segregation protein SMC [Streptococcus pneumoniae GA04375] Length = 1179 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELTQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|256005340|ref|ZP_05430305.1| chromosome segregation protein SMC [Clostridium thermocellum DSM 2360] gi|255990659|gb|EEU00776.1| chromosome segregation protein SMC [Clostridium thermocellum DSM 2360] Length = 1210 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 99/285 (34%), Gaps = 35/285 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A ++L F++ T VG NG GK+NI +AI L + R Sbjct: 1 MHLKRLEIQGFKSFADRIQLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ F + +G+ I + + R RS IN R Sbjct: 61 MEDVIFAGTEHRKPMGFAEVSLTFDNSDGVLPIDFSEVTVTRRVYRSGESEYMINKTPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L +D I S S +RR + + ++ R + E Sbjct: 121 LKDIYELFLDTGIGKDGYSIIGQGRVDEILSSKSEDRRAIFEEASGIMK--YKVRKQEAE 178 Query: 164 RLMRG-RNRLLTEG---YFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEY 215 + + R LL + + Q +E+ + R + +N I Y Sbjct: 179 KKLEMTRQNLLRINDIIAELENQLEPLREQ-SEVAKRYLGLRETLKVLEVNVYIENIARY 237 Query: 216 VQKE-NFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKM 257 +K S+ +D + + +L + L D Sbjct: 238 KEKIKELEENYASVKDNIDSENKRLEEITSLNQRNLSILKDMEGR 282 >gi|255731480|ref|XP_002550664.1| hypothetical protein CTRG_04962 [Candida tropicalis MYA-3404] gi|240131673|gb|EER31232.1| hypothetical protein CTRG_04962 [Candida tropicalis MYA-3404] Length = 1100 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 13/148 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ L++ F + S L Q +G NG GK+ +L IS + R +S D Sbjct: 78 IEKLSLKNFMCHDSFELELGPQLNFIIGRNGSGKSAVLTGISVGLGAKATDTNRGSSIKD 137 Query: 64 VTRIGSP-SFFSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVI-RVV 113 + + G S + + EG + + KL+ + S N + Sbjct: 138 LIKDGKSVSRITIVFKNEGPDAYKPNVYGNKIIVERKLQRQGGNSYSLKTSNGKTVSHKK 197 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR 141 +L++ L + F R Sbjct: 198 SDLDEMLYKFSITVDNPLAFLSQDKARE 225 >gi|291569106|dbj|BAI91378.1| DNA repair protein RecN [Arthrospira platensis NIES-39] Length = 592 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 21/197 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L I F L L +F G+ G GK+ IL+A+ + G+ R Sbjct: 2 LISLRIENFALIDHLDLELGPGLNVFTGETGAGKSIILDAVDAVLGGK-----VDRRSIR 56 Query: 67 IGS-----PSFFSTFARVEGMEGLADISI----------KLETRDDRSVRCLQINDVVIR 111 G + F + +I + +L D+ ++N +++ Sbjct: 57 TGCDRAILEACFEVNPDLIDWFREQEIDLVDGSLVVCCRELVVNQDKFRSKSRLNGILVS 116 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRN 170 R + + G +R +LD + R R+ + R +N Sbjct: 117 RTIIDGLRDRFVEITAQGQTVQLGKPALQREWLDLYGGSNTIGLRERVSQAYTRAREVQN 176 Query: 171 RLLTEGYFDSSWCSSIE 187 L I+ Sbjct: 177 ALQKRRQDSQQRLQRID 193 >gi|240103799|ref|YP_002960108.1| chromosome segregation protein [Thermococcus gammatolerans EJ3] gi|239911353|gb|ACS34244.1| DNA double-strand break repair rad50 ATPase (rad50) [Thermococcus gammatolerans EJ3] Length = 885 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 97/261 (37%), Gaps = 34/261 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++++ + I FR + + F + +G NG GK++ILEAI Sbjct: 1 MRVRKIEIRNFRAHRKSIVEFSDGINLIIGQNGAGKSSILEAIFASLYL----------- 49 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIRVVD 114 G PSF + + G ++S+ LE TR + L+ ++ Sbjct: 50 ---GHPSFPKGYLKANARVGTGELSLGLEFEHNGKTYRITRTTKKSELLENGKLIAEKSS 106 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA---IDPRHRRRMI--DFERLMRGR 169 E+ + + + ++++ R+ ++ ++ ++ R+ + D+E R Sbjct: 107 EVARWVERNVYP---LQVYTNALYIRQGEIEGIITNREVMEKVLRKVLGIEDYENAERNS 163 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLS 227 ++ E + + AE+ +++ A L S + + ++ + KLS Sbjct: 164 AEVIRELKRRRENLKKLIERKAEVEDRLSEAGKRFAETLRRISELRKRERELSAEVEKLS 223 Query: 228 LTGFLDGKFDQSFCALKEEYA 248 + + L++ A Sbjct: 224 KLYQEMKERKELIAGLEKRIA 244 Score = 53.8 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 62/315 (19%), Positives = 114/315 (36%), Gaps = 22/315 (6%) Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 ++ G SF R+ +E + L+ R + D+ R DE Sbjct: 575 LKRLSERGFSSFDEVEERIGELEKPYREFLSLKDIPRRIEALEKKLDIEQRKADE--SRA 632 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 I+ L +++ L R+ F + + + + ER R L Sbjct: 633 NIARLKAELEKARKELEEARKEFSEEDFERAEREYLEKSRALERA---RAELEGAESLRD 689 Query: 181 SWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 I+ A LG R +E+I + + + +K + L G + Sbjct: 690 EIARLIDELKANLGEIEKAERELELIEKALADLTAFREKIARLKAEEELRGL------EE 743 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRT-LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 L E ++ +G+ RR G R +L V Y + I S GE+ + + Sbjct: 744 VQKLAGELFSEMTEGKYQGIRLRREKRYGKERIELKVLYAGNEVGIDFLSGGERIALGLA 803 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD---IGSQIFMTGTDKSVF 355 LA + G +L+LDE + LDE++R L I++ Q+ + D+ + Sbjct: 804 FRLALSLY---KVGNLELLILDEPTPFLDEERRKKLVEIISSQLRKIPQVIIVSHDEELK 860 Query: 356 DSLNETAKFMRISNH 370 D+ + +R++N Sbjct: 861 DAAD---YVIRVTNA 872 >gi|163847436|ref|YP_001635480.1| SMC domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|163668725|gb|ABY35091.1| SMC domain protein [Chloroflexus aurantiacus J-10-fl] Length = 379 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 62/397 (15%), Positives = 123/397 (30%), Gaps = 77/397 (19%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 ++++ + + F++ L I +G NG GK+NIL + R Sbjct: 4 DGHMQLQTIKVQGFKSIRELEFSLRP-LNILIGANGSGKSNIL---GVFAFLRAMVERHL 59 Query: 62 A-DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 V R G F + S+++E + R + N + + Sbjct: 60 QMYVARAGGADRILHFGQKNTD------SLQIELWFTKKNRRARGN---------IIANG 104 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 LVP++ DR VFA + +E+ + L + Sbjct: 105 YRCALVPAVG--------------DRFVFAEERAFFHD-RRYEKPVE----TLLGSGHEE 145 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---- 236 S A G I ++ A+ S I+ Y + ++ TG +D + Sbjct: 146 SLLP------ASYGRGIPA---DVFEAMQSWIV-YHFHDTSDSARVKQTGDIDDNYWLRQ 195 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI------------ 284 D S Y ++ + + ++ P D ++ Sbjct: 196 DASNLTAYLYYIQQQAPDHYRNIVDVIRMVAPFFDDFVLRPSPFNPNKIKLEWRERGSDT 255 Query: 285 ---AHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-- 338 A+ S G + + + L + F I+LLDE L + L ++ Sbjct: 256 YFDAYALSDGTLRFICLATLL-----LQPARKFPAIILLDEPEMGLHPYAIHVLAELLHS 310 Query: 339 TDIGSQIFMTGTDKSVFDSL-NETAKFMRISNHQALC 374 +Q+ + ++ + E + + Q +C Sbjct: 311 AATQTQVIVATQSVTLVNQFEPEDIVVVERQDGQPVC 347 >gi|116629438|ref|YP_814610.1| chromosome segregation ATPase [Lactobacillus gasseri ATCC 33323] gi|282850852|ref|ZP_06260226.1| chromosome segregation protein SMC [Lactobacillus gasseri 224-1] gi|311110914|ref|ZP_07712311.1| cell division protein Smc [Lactobacillus gasseri MV-22] gi|116095020|gb|ABJ60172.1| condensin subunit Smc [Lactobacillus gasseri ATCC 33323] gi|282557804|gb|EFB63392.1| chromosome segregation protein SMC [Lactobacillus gasseri 224-1] gi|311066068|gb|EFQ46408.1| cell division protein Smc [Lactobacillus gasseri MV-22] Length = 1186 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 48/267 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + ++ L ++ F+++A + F+ T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116 DV GS A VE + D + + + R + N +++ Sbjct: 61 MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLASDDEEVVVTRKILRNGESDYLLNHHPVR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K +R ++ M D I + +RR +F E Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ A + + +++ L I ++ + Sbjct: 176 TALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKK 250 LD K Q E ++ Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEE 240 >gi|121533799|ref|ZP_01665626.1| chromosome segregation protein SMC [Thermosinus carboxydivorans Nor1] gi|121307790|gb|EAX48705.1| chromosome segregation protein SMC [Thermosinus carboxydivorans Nor1] Length = 1185 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 96/283 (33%), Gaps = 38/283 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----RGFRRA 59 + ++ L + F+++A + F T VG NG GK+NI +AI + + G R R A Sbjct: 1 MLLRKLELYGFKSFADKTEVEFGPGITAIVGPNGSGKSNITDAIRW-ALGEQNIRNLRGA 59 Query: 60 SYADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVI 110 DV GS A V + + ++ L+ + R + IN Sbjct: 60 KVEDVIFAGSAKRRPLGVAEVSLVFDNSSGTLPLDFNEVTITRRVYRSGDSEYYINKAPC 119 Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 R+ D + + +D + + + ERR F + + + Sbjct: 120 RLKDIHELLFDVGIGRDSLTVIGQNKIDEVLNAKAEERRLFFEEAAG---------ITKY 170 Query: 163 ERLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + R R L E + + + I Q+ L + R + N L ++ Sbjct: 171 KHRKREALRKLEETEQNLVRVNDLIAEIHNQLGPLAE--SAERTKRYNVLRQELISCQVT 228 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ + + +Q +E A R+ + Sbjct: 229 VLLDRLERATKMAESARLEQETLTEQEVVAAAQLSVRESEKER 271 >gi|315303705|ref|ZP_07874219.1| chromosome segregation protein SMC [Listeria ivanovii FSL F6-596] gi|313627918|gb|EFR96537.1| chromosome segregation protein SMC [Listeria ivanovii FSL F6-596] Length = 1186 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 5/109 (4%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + + F T VG NG GK+NI EAI L + R Sbjct: 1 MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 DV GS + FA V + D + L+ + R + N Sbjct: 61 MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGE 109 >gi|288573630|ref|ZP_06391987.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569371|gb|EFC90928.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 447 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L ++ FR Y F + TI VG+NG GKT IL+AI+ + G F+ + + Sbjct: 2 LINLTLNNFRRYEKAHFCFHPKMTILVGENGKGKTTILDAIAVM-LGTYFQGSK----IK 56 Query: 67 IGSPSFFSTFARV 79 G + AR+ Sbjct: 57 TGQSTVKKDDARL 69 >gi|225860920|ref|YP_002742429.1| chromosome segregation protein SMC [Streptococcus pneumoniae Taiwan19F-14] gi|298229965|ref|ZP_06963646.1| chromosome segregation protein SMC [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254344|ref|ZP_06977930.1| chromosome segregation protein SMC [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502756|ref|YP_003724696.1| SMC structural maintenance of chromosomes partitioning protein [Streptococcus pneumoniae TCH8431/19A] gi|225727720|gb|ACO23571.1| chromosome segregation protein SMC [Streptococcus pneumoniae Taiwan19F-14] gi|298238351|gb|ADI69482.1| SMC structural maintenance of chromosomes partitioning protein [Streptococcus pneumoniae TCH8431/19A] Length = 1179 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ +G A I++E RS +I+ +R Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215 ++ L Y + +E Q AE K + R ++ L + I E Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + +L+ L + Q L+EE + L R+ Sbjct: 238 KAELESTEEELTQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277 >gi|163784051|ref|ZP_02179006.1| purine NTPase [Hydrogenivirga sp. 128-5-R1-1] gi|159880678|gb|EDP74227.1| purine NTPase [Hydrogenivirga sp. 128-5-R1-1] Length = 890 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 74/208 (35%), Gaps = 24/208 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + +K L + F + +L F T+ +GDNG GK++ILEAI F G + + Sbjct: 1 MILKSLYLENFLAHEETKLNFAENGITVLIGDNGAGKSSILEAIQFALYGSSSKGNI-SQ 59 Query: 64 VTRIG-SPSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIRV 112 + + G + G E + I L + ++ L + + Sbjct: 60 LVKWGRKKAKIELEFIKNGSEYKIEREIVLTGKSHSQTAVVYKKEKGNYRLYYQKNINKE 119 Query: 113 VDELNKHLRISWLVP------SMDRIFSGLSMER----RRFLDRMVFA-IDPRHRRRMID 161 + ++ + ++L ++ + +R L+ ++ + ++ + Sbjct: 120 LPKITGITQKTFLNSILVKQGEIEGLLELTPKKRAQVFEELLEMSLYQLLSEKYGEKRRQ 179 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 E+ + L + S ++ + Sbjct: 180 IEKEINAVQSSLPDEKEIKEKLSQLKEE 207 >gi|242079535|ref|XP_002444536.1| hypothetical protein SORBIDRAFT_07g023430 [Sorghum bicolor] gi|241940886|gb|EES14031.1| hypothetical protein SORBIDRAFT_07g023430 [Sorghum bicolor] Length = 1253 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 18/151 (11%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63 I L + F++Y + T +G NG GK+N+++AISF+ R R A D Sbjct: 22 IDRLVVENFKSYKGEQTIGPFVDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLKD 81 Query: 64 VT-----RIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVI------- 110 + R R+ ++ +IN + Sbjct: 82 LIYALDDRDKEAKGRRASVRLFYRQSNQEELCFTRSITGGGGGSEYRINGSPVTWDQYNA 141 Query: 111 --RVVDELNKHLRISWLVPSMDRIFSGLSME 139 R + L K ++ I S E Sbjct: 142 KLRSLGILVKARNFLVFQGDVESIASKNPKE 172 >gi|156839145|ref|XP_001643267.1| hypothetical protein Kpol_1063p20 [Vanderwaltozyma polyspora DSM 70294] gi|156113869|gb|EDO15409.1| hypothetical protein Kpol_1063p20 [Vanderwaltozyma polyspora DSM 70294] Length = 1171 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNILDAICFVLGISSMATVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E IS+ + + + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFDNSDKSNAPIGFESSPTISVTRQVALGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 L+ + + + + + Sbjct: 120 HRAPQQSVLHLFQSVQLNINNPNFLIMQG 148 >gi|238852588|ref|ZP_04642998.1| chromosome segregation protein SMC [Lactobacillus gasseri 202-4] gi|238834734|gb|EEQ26961.1| chromosome segregation protein SMC [Lactobacillus gasseri 202-4] Length = 1186 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 48/267 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + ++ L ++ F+++A + F+ T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116 DV GS A VE + D + + + R + N +++ Sbjct: 61 MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLASDDEEVVVTRKILRNGESDYLLNHHPVR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K +R ++ M D I + +RR +F E Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ A + + +++ L I ++ + Sbjct: 176 TALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKK 250 LD K Q E ++ Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEE 240 >gi|226953498|ref|ZP_03823962.1| chromosome segregation ATPase [Acinetobacter sp. ATCC 27244] gi|226835783|gb|EEH68166.1| chromosome segregation ATPase [Acinetobacter sp. ATCC 27244] Length = 1152 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 46/291 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P R+F + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMISRLVEAKPEEMRVFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + + + R+ D ++ + R L + ++E+Q+ L ++I + Sbjct: 180 TLQHLEHTEQN-LARLEDIAVELKSQLRTLKRQSEAAIQYKTLESQIRHLKIEILSFQAN 238 Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 + L EY + + L + A + + + Sbjct: 239 QSHKLQ---QEYTVEMTELGERFKLVRSESNTIEHDLEATSALFQRLIQQS 286 Score = 36.4 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + ++A S GE+ + + + A RL AP +LDE+ A LD+ + Sbjct: 1039 GKRNSSLALLSGGEKTLTALALVFAIFRL-----NPAPFCVLDEVDAPLDDANVQRYCNL 1093 Query: 338 VTDIGSQI 345 V ++ Q+ Sbjct: 1094 VKELSEQV 1101 >gi|187939686|gb|ACD38829.1| hypothetical protein PACL_0581 [Pseudomonas aeruginosa] gi|187939764|gb|ACD38905.1| hypothetical protein PACL_0647 [Pseudomonas aeruginosa] Length = 581 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L I+ F+ L A + G NG GK+++L+ ++ G+ R + D+ Sbjct: 1 MRITKLEITNFQGLRHAALDVSAPVLLVAGHNGAGKSSLLDGVAMAFNGQPRRVSLKKDM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISI 90 ++ + ARVE ++ ++ + Sbjct: 61 AQLVTEGAKKGEARVEWLDAAYEVQV 86 >gi|218675373|ref|ZP_03525042.1| ATPase [Rhizobium etli GR56] Length = 446 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE--AISFLSPGRGF-----R 57 +K+ L+I FR + Q + +G+N GKT +LE AI+ S GF R Sbjct: 1 MKLNELDIKNFRGFEERGFRLHPQFNLVIGENASGKTTLLEAAAIAVSSWLLGFQGTASR 60 Query: 58 RASYADV 64 DV Sbjct: 61 NIRTRDV 67 >gi|313124069|ref|YP_004034328.1| condensin subunit smc [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280632|gb|ADQ61351.1| Condensin subunit Smc [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1186 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 36/290 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSV-RCLQINDVVIR 111 DV GS + + D S + + R +S IN +R Sbjct: 61 MKDVIFAGSQFRKPSNRAEVTMVFDNRHRELDFSADQVSITRRILKSGDNEYLINQQPVR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDR--MVFAIDPRHR----- 156 + D L S+ D+I + + ERR + V + + Sbjct: 121 LRDVRALFLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQGQ 180 Query: 157 -----RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 +I L+ + L + SS + Q A L + I L+ Sbjct: 181 LETTNDNLIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLAQE 240 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 E QK LS LD + QS L + + + +K D + Sbjct: 241 EREVSQKLAKSQELLS---RLDAEVKQSQAKLAAKRQEFQLESQKRDQVQ 287 >gi|153869299|ref|ZP_01998944.1| hypothetical protein BGP_1259 [Beggiatoa sp. PS] gi|152074179|gb|EDN71062.1| hypothetical protein BGP_1259 [Beggiatoa sp. PS] Length = 254 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 5 IKIKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 +KI L I FR L + F T+ VG NG GKT+IL+A+ + R Sbjct: 1 MKIHTLTIKNFRAIEKLSIDFTNNWSQPRPVTLIVGPNGSGKTSILDAVLMVV-----RT 55 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100 + + R+ FS V G A+I + D + Sbjct: 56 SENPNNPRLRDGLEFSPAQLVRGRGKNAEIEFEYSIEKDEAN 97 >gi|254422702|ref|ZP_05036420.1| RecF/RecN/SMC N terminal domain, putative [Synechococcus sp. PCC 7335] gi|196190191|gb|EDX85155.1| RecF/RecN/SMC N terminal domain, putative [Synechococcus sp. PCC 7335] Length = 921 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYA 62 ++I + ++ F+ + + F G+NG GKT+ILEAI+ + +++ Sbjct: 1 MQILSVALTNFKTHKEQQFDFQLGTNAICGENGAGKTSILEAIAWVLFNYQGSYKK---E 57 Query: 63 DVTRIGSPSFFSTFARVEGMEGL 85 D+ R G+ S + + Sbjct: 58 DLIRNGASSAQVRVVFISSRDSR 80 >gi|28378330|ref|NP_785222.1| cell division protein Smc [Lactobacillus plantarum WCFS1] gi|28271165|emb|CAD64070.1| cell division protein Smc [Lactobacillus plantarum WCFS1] Length = 1185 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 +++K L IS F+++A ++ F A T VG NG GK+NI+EAI L + R Sbjct: 1 MQLKSLEISGFKSFADKTKIDFQAGMTGIVGPNGSGKSNIIEAIRWVLGEQAVKSLRGTK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS + A+V +D + L+ + R L N Sbjct: 61 MTDVIFAGSANRKPLNMAKVTITFDNSDHFLPLDYAEVSITRKLFRNG 108 >gi|134045282|ref|YP_001096768.1| SMC domain-containing protein [Methanococcus maripaludis C5] gi|132662907|gb|ABO34553.1| SMC domain protein [Methanococcus maripaludis C5] Length = 993 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 104/277 (37%), Gaps = 47/277 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASY 61 + IK + + FR++ + + F+ T +G NG GK++I +A++F G FR Sbjct: 1 MIIKNIKMENFRSHRNTSINFNKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFR---I 57 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--------VIRVV 113 ++ + GS SF +E +K + +++ L +N + + + Sbjct: 58 ENLMQQGSASF---SVELEFEMMGNIYLVKRKRFQNKTDDKLYVNGKLNAESASEINKKI 114 Query: 114 DELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 +E+ + + + + +R+ + +++ + +E+ Sbjct: 115 EEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLG---------IEKYEKA-S 164 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 + ++ + Y +E ++ + E++ L L E + E L Sbjct: 165 EKMNIVKKSY--EEMLFKLEGELVQE--------PEILENLEKLKNEVSESEILKEEILK 214 Query: 228 LTGFLDG---KFDQSFCALKEEYAK-KLFDGRKMDSM 260 L+ + + +++E++A+ L D + Sbjct: 215 KYENLEKLKLEKNSELISMEEKFAENNLLKENLKDII 251 Score = 38.0 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 10/95 (10%) Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 + D + + G GEQ V + + L + ++LDE +A+LDED Sbjct: 890 KDDYSLIVDGLPVETLSG--GEQIAVSLALRLG---ISKAVCNNIECIILDEPTAYLDED 944 Query: 330 KRNALFRI---VTDIGSQIFMTGTDKSVFDSLNET 361 +R L I + I +T + + + Sbjct: 945 RRKNLLNIFKNIKTINQMAIIT--HHQELEQIADN 977 >gi|327470652|gb|EGF16108.1| cell division protein Smc [Streptococcus sanguinis SK330] Length = 1178 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 59/340 (17%), Positives = 116/340 (34%), Gaps = 43/340 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNRDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKKTE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKIN----IARVEMINALSSLIMEY 215 + L Y S +E Q AE + R ++ L + + Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQ-AETAKRFLSLDGQRRELYLDVLVAQLTAN 237 Query: 216 VQKENFPHIKLS-----LTGFLDGKFD-----QSFCALKEEYAKKLFDGRKMDSMSRRTL 265 ++ L+ L + + + Q+ A + E + L D + R + Sbjct: 238 KERLTKAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHELNQTLSDNQASLLELTRLI 297 Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + + E+++ + LA Sbjct: 298 SDLERQIDLSKLESSQAATSRREN-EERLATLSEKLAQIE 336 Score = 38.0 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|295135054|ref|YP_003585730.1| P-loop containing nucleoside triphosphate hydrolase [Zunongwangia profunda SM-A87] gi|294983069|gb|ADF53534.1| P-loop containing nucleoside triphosphate hydrolase [Zunongwangia profunda SM-A87] Length = 643 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 60/380 (15%), Positives = 113/380 (29%), Gaps = 79/380 (20%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I FR + L F + I +G+NG K+ +++AI L D+ Sbjct: 1 MYLAKLTIENFRGIKKMILEFQKRINILIGENGSNKSAVIDAIRLLYNM----GEQLRDL 56 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 FS F E + D SI ++ + + + L +++ Sbjct: 57 -----SVGFSDFH--ESVTTNTDGSITIDRSSKIKI-SFEFRGLSASQKGALYEYM---V 105 Query: 125 LVPSMDR-------------------------IFSGLSMERRRFLDRMVFAIDPRHRRRM 159 + P D G + + F +F + + Sbjct: 106 IDPEDDENEYAGITLTFEDKGGKYPVSSYYTGNVEGQRADYKTF---EIFQ--HYYLSGL 160 Query: 160 IDFER-LMRGRNRLL----TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214 D + L+ R +L + + IE M + ++ + E Sbjct: 161 RDSTKDLLSNRGNVLGRVIKRRVEKNESEAKIEQIMTDANDRLLE---------QPEVSE 211 Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274 N ++ F D + K EY I P+ Sbjct: 212 TRSGVN-DNLSSIYQRFRDNQIGLQIEQSKTEYI--------------VNAIKPYLPHDR 256 Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNA 333 V ++ S G+ ++ + L + LL++E AHL + + Sbjct: 257 VLLSGDGFSLWQNSLGQNNLIYIATVLGDIKHQIEENKIPHFALLIEEPEAHLHPQLQLS 316 Query: 334 LFRIVTD----IGSQIFMTG 349 L + D SQ+F+T Sbjct: 317 LCGFLRDSSTSKNSQLFITS 336 >gi|254556538|ref|YP_003062955.1| cell division protein Smc [Lactobacillus plantarum JDM1] gi|300767267|ref|ZP_07077179.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180481|ref|YP_003924609.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045465|gb|ACT62258.1| cell division protein Smc [Lactobacillus plantarum JDM1] gi|300495086|gb|EFK30242.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045972|gb|ADN98515.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1185 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 +++K L IS F+++A ++ F A T VG NG GK+NI+EAI L + R Sbjct: 1 MQLKSLEISGFKSFADKTKIDFQAGMTGIVGPNGSGKSNIIEAIRWVLGEQAVKSLRGTK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS + A+V +D + L+ + R L N Sbjct: 61 MTDVIFAGSANRKPLNMAKVTITFDNSDHFLPLDYAEVSITRKLFRNG 108 >gi|324993857|gb|EGC25776.1| cell division protein Smc [Streptococcus sanguinis SK405] Length = 1178 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 58/352 (16%), Positives = 117/352 (33%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 ++ A E + + ++ Y K + ++ L K + L ++ A L Sbjct: 239 ERLTQA-EEDLRNIQQELVAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|282857424|ref|ZP_06266657.1| RecF/RecN/SMC family protein [Pyramidobacter piscolens W5455] gi|282584709|gb|EFB90044.1| RecF/RecN/SMC family protein [Pyramidobacter piscolens W5455] Length = 879 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 90/283 (31%), Gaps = 34/283 (12%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + I+ L + F+++ + L F T VG NG GK+NIL+ + ++ S R Sbjct: 1 MFIERLTLKNFKSFGGTHELPFAPGFTAIVGPNGSGKSNILDGLRWVLGESGAARLRITR 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIK--LETRDDRSVRCLQINDVVIRVVDELNK 118 +D+ GS + S A + L D + L D S L +N V +R+ D Sbjct: 61 QSDLIFQGS-AGLSEAAETDVALDLNDGGGRGSLRRHLDASGGALYVNGVRMRIQD--LT 117 Query: 119 HLRISWLVPSMDRIFSGL----------SMERRRFLDRMVFAIDPRHRRRMIDFER---- 164 + W + F G +RR ++ + +R Sbjct: 118 QFKQQWRLEGDRSAFIGQGEVGAAVLQKPFQRR-------LQLEELFGIDLYRKKRDGAL 170 Query: 165 -LMRGRNRLLTEGYFDSSWCSSIEAQMAE--LGVKINIARVEMINALSSLIMEYVQKENF 221 ++ L + ++A + E + L ++ Y + Sbjct: 171 DELKQSGDELLRLHTLMGELRVRREEIAPDLQNARKAKDYQERLEDLRRVLYHYRRCNEE 230 Query: 222 PHIK-LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 +K L G S + L R S R Sbjct: 231 ARLKTLERKHEEAGSQLDSAGRWASLWKNALERLRARGSEYAR 273 >gi|38304051|gb|AAH61906.1| SMC2 protein [Homo sapiens] Length = 212 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 18/123 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVI 110 V Sbjct: 120 VNA 122 >gi|30173243|sp|Q8CG48|SMC2_MOUSE RecName: Full=Structural maintenance of chromosomes protein 2; Short=SMC protein 2; Short=SMC-2; AltName: Full=Chromosome-associated protein E; AltName: Full=FGF-inducible protein 16; AltName: Full=XCAP-E homolog gi|26986198|emb|CAD59182.1| SMC2 protein [Mus musculus] Length = 1191 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 99/280 (35%), Gaps = 34/280 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 ++ D+ + G + G E +I++ + + L IN Sbjct: 61 NFQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + +M ++ + + Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234 Query: 224 IKLSLTGFLDGKFDQSFCALKE------EYAKKLFDGRKM 257 I D K ++S LKE + L + K Sbjct: 235 IAYQFLRAEDTK-ERSAGELKEMQDKIVNLQEVLSENEKK 273 >gi|317500482|ref|ZP_07958706.1| chromosome segregation protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316898237|gb|EFV20284.1| chromosome segregation protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 1186 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 26/210 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ ++ F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVQGFKSFANKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + + + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNADHKLPVDYEEVTVTRKLYRSGESEYLINGASCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ + + Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNLS-VK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 +L R L +E Q+ L Sbjct: 180 KLEEERMNLTRVN----DILQELEKQLGPL 205 Score = 40.7 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 27/204 (13%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + M+ R+ LT+ + ++ ++ +LG A + N Q ++ Sbjct: 953 YNHAMKLRDENLTDLAYMKRQIQELKNEIRKLGTVNVNAIEDFKNISERYAFLKNQHDDL 1012 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI------- 274 + +L + D+ A+++++A++ ++ + R L G + L Sbjct: 1013 VEAEQTLMQII----DELDAAMRKQFAEQFLKIKEEFNTVFRQLFGGGKGTLELMEDEDI 1068 Query: 275 ----VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 + + S GE+ + + + A +P LLDEI A Sbjct: 1069 LEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQNLKPSPFCLLDEIEAA 1123 Query: 326 LDEDKRNALFRIVTDI--GSQIFM 347 LD++ + + + +Q + Sbjct: 1124 LDDNNVTRFAQYLHKLTKNTQFIV 1147 >gi|153853252|ref|ZP_01994661.1| hypothetical protein DORLON_00646 [Dorea longicatena DSM 13814] gi|149754038|gb|EDM63969.1| hypothetical protein DORLON_00646 [Dorea longicatena DSM 13814] Length = 1186 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 27/224 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ ++ F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVQGFKSFANKIKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + + + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNSDHKLPVDYEEVTVARKLYRSGESEYLINGRACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ M + Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPDERRELFDEAAGIVKFKRRKSMS-VK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207 +L R L+ S +E Q+ L + + E + Sbjct: 180 KLEDERQNLVRVN----DILSELEKQVGPL-ERQSEKAREYLKR 218 Score = 38.0 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 89/272 (32%), Gaps = 33/272 (12%) Query: 87 DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146 +I +++E + + +E++KH+ +D+ L +R + + Sbjct: 884 EIKLQIERSKREREELNKRHKSFFEKREEISKHMT------DLDKEVYRLESQREGYEEA 937 Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG---------VKI 197 I+ + RN LT+ ++ ++ LG K Sbjct: 938 SEKQINYMWEEYELTLNHAKELRNPNLTDLADMKRRIQELKGEIRALGNVNVNAIEEYKS 997 Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 R E + ++E E I L + +F + F + E+ + + Sbjct: 998 VSERYEFLKGQHDDLVE--AAETLEQIIEELDNAMRKQFKEQFARIAAEFDQVFKEMF-- 1053 Query: 258 DSMSRRTLIGPHRSDLI---VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISN 309 + TL D++ + + S GE+ + + + A Sbjct: 1054 -GGGKGTLELMEDEDILEAGIRIIAQPPGKKLQNMMQLSGGEKALTAIALLFA-----IQ 1107 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 +P LLDEI A LD++ + + + + Sbjct: 1108 NLKPSPFCLLDEIEAALDDNNVDRFAQYLHKL 1139 >gi|331089417|ref|ZP_08338316.1| chromosome segregation protein SMC [Lachnospiraceae bacterium 3_1_46FAA] gi|330404785|gb|EGG84323.1| chromosome segregation protein SMC [Lachnospiraceae bacterium 3_1_46FAA] Length = 1186 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 26/210 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ ++ F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVQGFKSFANKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + + + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNADHKLPVDYEEVTVTRKLYRSGESEYLINGASCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ + + Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNLS-VK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 +L R L +E Q+ L Sbjct: 180 KLEEERMNLTRVN----DILQELEKQLGPL 205 Score = 40.7 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 27/204 (13%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + M+ R+ LT+ + ++ ++ +LG A + N Q ++ Sbjct: 953 YNHAMKLRDENLTDLAYMKRQIQELKNEIRKLGTVNVNAIEDFKNISERYAFLKNQHDDL 1012 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI------- 274 + +L + D+ A+++++A++ ++ + R L G + L Sbjct: 1013 VEAEQTLMQII----DELDAAMRKQFAEQFLKIKEEFNTVFRQLFGGGKGTLELMEDEDI 1068 Query: 275 ----VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 + + S GE+ + + + A +P LLDEI A Sbjct: 1069 LEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQNLKPSPFCLLDEIEAA 1123 Query: 326 LDEDKRNALFRIVTDI--GSQIFM 347 LD++ + + + +Q + Sbjct: 1124 LDDNNVTRFAQYLHKLTKNTQFIV 1147 >gi|327461015|gb|EGF07348.1| cell division protein Smc [Streptococcus sanguinis SK1057] Length = 1178 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 58/352 (16%), Positives = 117/352 (33%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 ++ A E + + ++ Y K + ++ L K + L ++ A L Sbjct: 239 ERLTQA-EEDLRNIQQELVAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|254578968|ref|XP_002495470.1| ZYRO0B12122p [Zygosaccharomyces rouxii] gi|238938360|emb|CAR26537.1| ZYRO0B12122p [Zygosaccharomyces rouxii] Length = 1109 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK + + F + L + VG+NG GK+ IL AI+ R R S D Sbjct: 75 IKKVVLWNFMCHEHFELELGPRLNFIVGNNGSGKSAILTAITVGLGARAMDTNRGNSLKD 134 Query: 64 VTRIGSPS 71 + R G S Sbjct: 135 LIREGCHS 142 >gi|153816162|ref|ZP_01968830.1| hypothetical protein RUMTOR_02410 [Ruminococcus torques ATCC 27756] gi|145846497|gb|EDK23415.1| hypothetical protein RUMTOR_02410 [Ruminococcus torques ATCC 27756] Length = 1186 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 26/210 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ ++ F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVQGFKSFANKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + + + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNADHKLPVDYEEVTVTRKLYRSGESEYLINGASCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ + + Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNLS-VK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 +L R L +E Q+ L Sbjct: 180 KLEEERMNLTRVN----DILQELEKQLGPL 205 Score = 40.7 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 27/204 (13%) Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + M+ R+ LT+ + ++ ++ +LG A + N Q ++ Sbjct: 953 YNHAMKLRDENLTDLAYMKRQIQELKNEIRKLGTVNVNAIEDFKNISERYAFLKNQHDDL 1012 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI------- 274 + +L + D+ A+++++A++ ++ + R L G + L Sbjct: 1013 VEAEQTLMQII----DELDAAMRKQFAEQFLKIKEEFNTVFRQLFGGGKGTLELMEDEDI 1068 Query: 275 ----VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 + + S GE+ + + + A +P LLDEI A Sbjct: 1069 LEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQNLKPSPFCLLDEIEAA 1123 Query: 326 LDEDKRNALFRIVTDI--GSQIFM 347 LD++ + + + +Q + Sbjct: 1124 LDDNNVTRFAQYLHKLTKNTQFIV 1147 >gi|14520575|ref|NP_126050.1| chromosome segregation protein smc1 [Pyrococcus abyssi GE5] gi|5457791|emb|CAB49281.1| smc1 chromosome segregation protein [Pyrococcus abyssi GE5] Length = 1177 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 35/226 (15%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 I+ L + F++Y + + F T VG NG GK+NI +AI F+ G R + Sbjct: 4 IEKLELKGFKSYGNRKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63 Query: 62 ADVTRIGSPS-------FFSTFARVEGM---EGLADISIKLETRDDRSVRCLQINDVVIR 111 +D+ GS S + + E ++ IK D +N Sbjct: 64 SDLIFAGSKSEPPAKYAEVAIYFNNEDRGFPIDEDEVVIKRRVYPDGRS-SYWLNGRRA- 121 Query: 112 VVDELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 E+ L + + P I +ERR LD + + Sbjct: 122 TRSEILDVLSAAMISPEGYNIILQGDITKFIKMSPLERRLILDDISGIAEYD-----AKK 176 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 E+ ++ L + + + + ++ + K+ R + + L Sbjct: 177 EKALQE----LKQAEENLARVDLLIREVKKQLDKLEKERNDALRYL 218 >gi|291546253|emb|CBL19361.1| condensin subunit Smc [Ruminococcus sp. SR1/5] Length = 1086 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 108/305 (35%), Gaps = 48/305 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++A + F T VG NG GK+N+ +A+ ++ + R + Sbjct: 1 MYLKNIEVQGFKSFAQKINFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGGN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ SF S ++ + + + T R R +IN R Sbjct: 61 MQDVIFSGTELRKPLSFASVAITLDNSDHKLPVDFEEVTVTRRLYRSGESEYRINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + +RR Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVK--FKRRKNTTL 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINAL--SSLIMEYV 216 + + + L + S + Q+ L KI +A+ E + L + ++EY Sbjct: 179 KKLEEEQQNLVRV---TDILSELTKQLEPLERQSETAKIYLAKRENLKELDINMFLLEYE 235 Query: 217 QKENFPHIKLSLTGFLDGKFDQS-------------FCALKEEYAKKLFDGRK--MDSMS 261 N T + + ++ + EE +++ R+ D Sbjct: 236 HTGNLIRELEEKTRIAENQLKEAQDAHSRTKDEYERLEKILEELNERMEALREESRDRAI 295 Query: 262 RRTLI 266 R+ + Sbjct: 296 RKQQL 300 >gi|320334437|ref|YP_004171148.1| SMC domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319755726|gb|ADV67483.1| SMC domain protein [Deinococcus maricopensis DSM 21211] Length = 1095 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 10/117 (8%) Query: 7 IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 I + + F+++A +RL F T +G NG GK+N++EAI + + R R Sbjct: 2 IASITLQGFKSFADRVRLEFGPGVTAVIGPNGSGKSNVVEAIRWATHNARARELRAGRAT 61 Query: 63 DVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 ++ GS + + G A +++ D + +N +R D Sbjct: 62 ELIFHGSGGKAPLGLAEVTVELRDLPGRARLNLARRIYRDGTAEQD-VNGRAVRARD 117 >gi|325685924|gb|EGD27989.1| cell division protein Smc [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1186 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 36/290 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSV-RCLQINDVVIR 111 DV GS + + D S + + R +S IN +R Sbjct: 61 MKDVIFAGSQFRKPLNRAEVTMVFDNRHRELDFSADQVSITRRILKSGDNEYLINQQPVR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDR--MVFAIDPRHR----- 156 + D L S+ D+I + + ERR + V + + Sbjct: 121 LRDVRALFLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQGQ 180 Query: 157 -----RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 +I L+ + L + SS + Q A L + I L+ Sbjct: 181 LETTNDNLIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLAQE 240 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 E QK LS LD + QS L + + + +K D + Sbjct: 241 EREVSQKLAKSQELLS---RLDAEVKQSQAKLAAKRQEFQLESQKRDQVQ 287 >gi|301058624|ref|ZP_07199627.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300447272|gb|EFK11034.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 442 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-----RA 59 +K+K ++I FR +++ D T+FVG N GKT+ + G FR + Sbjct: 1 MKLKKIHIKNFRRLEDVQIDLDDGETVFVGPNNSGKTSATVIFRYFLKGNEFRIHDFSVS 60 Query: 60 SYADVTRIGSPS 71 ++ GS S Sbjct: 61 RIREIDHFGSES 72 >gi|253681396|ref|ZP_04862193.1| chromosome segregation protein SMC [Clostridium botulinum D str. 1873] gi|253561108|gb|EES90560.1| chromosome segregation protein SMC [Clostridium botulinum D str. 1873] Length = 1184 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L I F+++A LVF T VG NG GK+NIL+A+ ++ + R Sbjct: 1 MFLKSLEIRGFKSFADKTELVFKEGITAIVGPNGSGKSNILDAVKWVLGEQSIKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ +G I + + R RS IN+ R Sbjct: 61 MQDVIFSGTEFRKPVGLAQVNLILDNSDGELPIEYSEVTIMRRLFRSGESEYYINNTRCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + K ++ + SG ERR L+ Sbjct: 121 LKDIQELFMDTGIGKEGYSIIGQGKIEALLSGKPEERRSLLE 162 Score = 36.4 bits (83), Expect = 7.9, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 32/185 (17%) Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 ++ +A+LGV A + + QKE+ K L + D+ Sbjct: 977 IEIYKSDIAKLGVVNLGAIQQYKELMEKYTFMKEQKEDLIQAKEELLNVVKEMTDKMKTV 1036 Query: 243 LKEEYAKKLFDGRK---MDSMSRRTLIGPHRSDLIVDYCD---------------KAITI 284 E + KL + + ++DLI++ D K I Sbjct: 1037 FHENF-NKLRENFSETFRELFKG------GKADLILESGDELTSNIEINVQPPGKKLQNI 1089 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--G 342 S GE+ + + + A ++ P +LDEI A LD+ + + Sbjct: 1090 NLMSGGEKGLSAIALLFAILKM-----KPTPFCILDEIEAALDDSNVSRYSEFLRKFSSN 1144 Query: 343 SQIFM 347 +Q + Sbjct: 1145 TQFII 1149 >gi|228998624|ref|ZP_04158211.1| Chromosome partition protein smc [Bacillus mycoides Rock3-17] gi|229006124|ref|ZP_04163812.1| Chromosome partition protein smc [Bacillus mycoides Rock1-4] gi|228755200|gb|EEM04557.1| Chromosome partition protein smc [Bacillus mycoides Rock1-4] gi|228761092|gb|EEM10051.1| Chromosome partition protein smc [Bacillus mycoides Rock3-17] Length = 1189 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIVGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVSVTRRVSRSG 108 >gi|222056263|ref|YP_002538625.1| SMC domain protein [Geobacter sp. FRC-32] gi|221565552|gb|ACM21524.1| SMC domain protein [Geobacter sp. FRC-32] Length = 992 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 ++I +++ +++ + F + G NG+GK+ I EAI + G Sbjct: 1 MQILSIHLKNIKSHRDSEIHFSPGINVLSGPNGIGKSTIFEAIGYAMFG 49 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 20/148 (13%) Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 V+ + E++ L + + + V + + ++ D + A +E Y + Sbjct: 826 VQALKKKEELVKFLRNKVFKNVSAQLSERFREEISLRADSIYRTIAEADEELYWGDNYQI 885 Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314 D + + S G+ +V + LA + I Sbjct: 886 VLRDMSDG---------------AIRERSDDQLSGGQVMSAVVALRLALLQTIGAR---- 926 Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIG 342 + DE +++LD +R+ L + I Sbjct: 927 -VAFFDEPTSNLDASRRSNLAQAFRAID 953 >gi|309356249|emb|CAP37488.2| CBR-HIM-1 protein [Caenorhabditis briggsae AF16] Length = 1289 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 7/145 (4%) Query: 1 MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57 + + + L I F++Y + ++ T +G NG GK+N+++AISF+ R R Sbjct: 23 LPGKGHLHTLEIENFKSYKGKHIIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPTSLR 82 Query: 58 RASYADVTRIGSP--SFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVD 114 Y D+ G+P RV AD +IK R + ++ ++ Sbjct: 83 VKKYTDLI-HGAPINRPVGKKCRVTMNYKYADGTIKAFARGVNNGTSENYLDGQLVTKEA 141 Query: 115 ELNKHLRISWLVPSMDRIFSGLSME 139 + I + + + + ++E Sbjct: 142 YAAEMESIQIFIKARNFLVYQGAIE 166 >gi|308234555|ref|ZP_07665292.1| condensin subunit Smc [Atopobium vaginae DSM 15829] gi|328944153|ref|ZP_08241618.1| chromosome segregation protein Smc [Atopobium vaginae DSM 15829] gi|327492122|gb|EGF23896.1| chromosome segregation protein Smc [Atopobium vaginae DSM 15829] Length = 1188 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 29/269 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60 + +K L + F+++A ++FD T+ VG NG GK+N+ +A + L R R + Sbjct: 1 MYLKSLTLKGFKSFADKTEMIFDPGLTVVVGPNGSGKSNVSDAMLWVLGEQGPRNLRAQA 60 Query: 61 YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G S +FA V + +D ++ ++ D R + IN R Sbjct: 61 MEDVIFAGSSKRDAVSFAEVTLVLNNSDHTLPIDFADVAITRRMYRSGESEYLINGAAAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I +RR ++ R R+++ + + Sbjct: 121 LRDINDILHDSGLGKETHSIISQGKLDAILVSKPQDRRDLIEEAAGIAKHRRRKKLAEKK 180 Query: 164 RLM--RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + NR+ +E QM R + ++ ++ Sbjct: 181 LELMATHLNRIKDVKREIHKQLLPLEKQMG------VANRARELTSVLQRSKTMCAVDDL 234 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 +K + + E+ K+ Sbjct: 235 SALKARYEQLSSELKEANASVELLEFRKQ 263 >gi|190344508|gb|EDK36192.2| hypothetical protein PGUG_00290 [Meyerozyma guilliermondii ATCC 6260] Length = 1256 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 107/287 (37%), Gaps = 30/287 (10%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61 ++ L + F++Y + ++ F T +G NG GK+N+++AISF+ R + Sbjct: 48 RLVGLELYNFKSYRGTCKVGFGDSFFTSIIGPNGAGKSNMMDAISFVLGVNSSQLRSRNL 107 Query: 62 ADVT---RIGSPSFFS--------TFARVEGMEGLADIS-IKLETRDDRSVRC-LQINDV 108 D+ RIG S T A V+ + D S ++L+ S +IN+ Sbjct: 108 QDLIYRGRIGGDSAADTSFEHSNPTSAYVKAIYEKDDGSQLELKRTIGSSGNGDYKINNK 167 Query: 109 VIRVV---------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRR 157 + + L K +++I S + + ++ + + + P + + Sbjct: 168 NVTAYQYSMVLKEENILIKARNFLVFQGDVEQIASQSPRDLAQLIETISGSGELKPEYDK 227 Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYV 216 +++ ++ + +S + Q+AE + + I L L Y Sbjct: 228 LKDEYDAAHEFTTQVFSHKKTLNSESRQYKEQLAEKETFETKLQERVDITKLLHLYKLYH 287 Query: 217 QKENFPHIKLSLTG-FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 ++ I + + +S K+E KL + D + + Sbjct: 288 NEQKHAQISSEIGSKTEEIAKLESQIEEKKELYDKLVSAQAKDVLRQ 334 >gi|149280201|ref|ZP_01886324.1| ATP binding protein [Pedobacter sp. BAL39] gi|149229038|gb|EDM34434.1| ATP binding protein [Pedobacter sp. BAL39] Length = 462 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 25/48 (52%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52 ++I L ++ R + +L F + VG NGVGKT +LEA+ Sbjct: 1 MRINTLELTNVRGFTHAKLEFQPGFNLIVGINGVGKTTVLEALRISMT 48 >gi|293609094|ref|ZP_06691397.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829667|gb|EFF88029.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 1149 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGSYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P R+F + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRVFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E+Q+ AE Sbjct: 180 TLQHLEHTEQN-LSRLDDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLEATSALFQRLIQQSSPLQQEWQQA 296 >gi|319641270|ref|ZP_07995969.1| hypothetical protein HMPREF9011_01566 [Bacteroides sp. 3_1_40A] gi|317387143|gb|EFV68023.1| hypothetical protein HMPREF9011_01566 [Bacteroides sp. 3_1_40A] Length = 531 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG 53 I+ + I F+ + F + + VG+NGVGK+ ++EAIS L G Sbjct: 2 IERIIIKNFKGIKEADISFHDKINVIVGNNGVGKSTLIEAISLTLGHG 49 >gi|296282454|ref|ZP_06860452.1| chromosome segregation protein SMC [Citromicrobium bathyomarinum JL354] Length = 1140 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 29/244 (11%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++I+ L +S F+++ L + T VG NG GK+N+LEAI ++ + + R Sbjct: 1 MEIRQLRLSGFKSFVEPATLRIEPGLTGVVGPNGCGKSNLLEAIRWVMGETSAKSMRSGG 60 Query: 61 YADVTRIG-SPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--- 114 DV G + FA V G + D + + + ++N +R D Sbjct: 61 MEDVIFAGTAERPPRQFAEVVLTGADDSGDELEVVRRIERGAGSAYRVNGNDVRAKDVAL 120 Query: 115 -----ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 H + + + +ERR L+ I H R R Sbjct: 121 AFADAATGAHSPALVSQGKIAHMIAAKPVERRAMLE-EAAGIAGLHVR-----------R 168 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 ++ S + +E +A L +I R + + + + +L Sbjct: 169 KDAESKLRQTESNLARLEDLLAGLDSQITSLRRQ--AKQAERYAKLTDEIGVAEARLVFA 226 Query: 230 GFLD 233 + D Sbjct: 227 RWRD 230 >gi|281417644|ref|ZP_06248664.1| chromosome segregation protein SMC [Clostridium thermocellum JW20] gi|281409046|gb|EFB39304.1| chromosome segregation protein SMC [Clostridium thermocellum JW20] gi|316940319|gb|ADU74353.1| chromosome segregation protein SMC [Clostridium thermocellum DSM 1313] Length = 1190 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 99/285 (34%), Gaps = 35/285 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A ++L F++ T VG NG GK+NI +AI L + R Sbjct: 1 MHLKRLEIQGFKSFADRIQLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ F + +G+ I + + R RS IN R Sbjct: 61 MEDVIFAGTEHRKPMGFAEVSLTFDNSDGVLPIDFSEVTVTRRVYRSGESEYMINKTPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L +D I S S +RR + + ++ R + E Sbjct: 121 LKDIYELFLDTGIGKDGYSIIGQGRVDEILSSKSEDRRAIFEEASGIMK--YKVRKQEAE 178 Query: 164 RLMRG-RNRLLTEG---YFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEY 215 + + R LL + + Q +E+ + R + +N I Y Sbjct: 179 KKLEMTRQNLLRINDIIAELENQLEPLREQ-SEVAKRYLGLRETLKVLEVNVYIENIARY 237 Query: 216 VQKE-NFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKM 257 +K S+ +D + + +L + L D Sbjct: 238 KEKIKELEENYASVKDNIDSENKRLEEITSLNQRNLSILKDMEGR 282 >gi|331002415|ref|ZP_08325933.1| chromosome segregation protein SMC [Lachnospiraceae oral taxon 107 str. F0167] gi|330410231|gb|EGG89665.1| chromosome segregation protein SMC [Lachnospiraceae oral taxon 107 str. F0167] Length = 1185 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I F+++A+ + F T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKRIEIQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVSDAVRWVLGEQSAKQLRGGN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ F ++ + DI K T R R IN R Sbjct: 61 MQDVIFAGTELRKPLGFAYVAITLDNSDHKLDIDFKEVTVSRRLFRSGESEYLINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + K +D++ +G ERR D Sbjct: 121 LKDISELFFDTGIGKDGYSIIGQGQVDKVLNGKPEERRELFD 162 >gi|302528023|ref|ZP_07280365.1| DNA repair protein RecN [Streptomyces sp. AA4] gi|302436918|gb|EFL08734.1| DNA repair protein RecN [Streptomyces sp. AA4] Length = 594 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 86/254 (33%), Gaps = 43/254 (16%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---- 56 M ++I+ L + L A T+ G+ G GKT ++ + LS GR Sbjct: 1 MLAEMRIQGLGV-----IEEALLELHAGFTVVTGETGAGKTMVVTGLHLLSGGRAEASKV 55 Query: 57 RRASYADVT-------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109 R + + + T A + E + I+++ D RS L V Sbjct: 56 RNGMLKAFVEGRFTVGKDDAAARIVTDAGADVDEDGSVIALRTVAADGRSRAHLGGRSVP 115 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---- 165 + V+ EL++ + R+ E+R +DR R + ++ R+ Sbjct: 116 VGVLSELSEQVIAVHGQNDQLRLLR--PAEQRAVIDRFAGDAV---GRPLAEYRRVREEW 170 Query: 166 ------MRGRNRLLTEGYFDSSWCS----SIEA------QMAELGVKINIARVEMINALS 209 + R+ E + I+A + EL +I R+ ++ L Sbjct: 171 LSVLTELSERSNRSREMAQQADLLKHGLNEIDAVAPEPGEDVELTEQI--KRLAAVDELR 228 Query: 210 SLIMEYVQKENFPH 223 ++ E + Sbjct: 229 AMATEAHAAVSGAQ 242 >gi|50084058|ref|YP_045568.1| putative chromosome segregation ATPase [Acinetobacter sp. ADP1] gi|49530034|emb|CAG67746.1| putative chromosome segregation ATPases [Acinetobacter sp. ADP1] Length = 1149 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 89/235 (37%), Gaps = 43/235 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L ++ F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLAGFKSFADSATLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G+ F +T+ ++ G + + + + +R + +N Sbjct: 61 MQDVIFTGTAKRKPVGMASVELRFENTYGKLGGTYNAYN-ELAVRRQVNRDGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P RIF + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLIDAKPEEMRIFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198 + + + R+ D + ++G+ + L + +E Q+ L ++I Sbjct: 180 TLQHLEHTEQN-LARLEDIAQELKGQLKSLKRQSEAAVQYKQLEQQIRTLKIEIL 233 Score = 39.5 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + ++A S GE+ + + + A RL AP +LDE+ A LD+ + Sbjct: 1039 GKRNSSLALLSGGEKALTALALVFAIFRL-----NPAPFCVLDEVDAPLDDANVQRFCNL 1093 Query: 338 VTDIGSQI 345 V ++ Q+ Sbjct: 1094 VKELSEQV 1101 >gi|325687263|gb|EGD29285.1| cell division protein Smc [Streptococcus sanguinis SK72] Length = 1178 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQVETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ A ++ N L Y +++ +L K + L ++ A L Sbjct: 239 EKLIKAEEDLTNIQQELAAYYGKRDELEVENQTLK----AKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 38.0 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|228475081|ref|ZP_04059809.1| chromosome segregation protein SMC [Staphylococcus hominis SK119] gi|228271066|gb|EEK12454.1| chromosome segregation protein SMC [Staphylococcus hominis SK119] Length = 1189 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 102/279 (36%), Gaps = 39/279 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K ++ F+++A + FD T VG NG GK+NI +AI L + R + Sbjct: 2 VYLKSIDTIGFKSFADRTNVQFDRGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61 Query: 61 YADVTRIGSPSF-FSTFARVEGMEGLADISIKLET----------RDDRSVRCLQINDVV 109 D+ G+ +A V+ + +++E R S L + Sbjct: 62 MEDIIFSGAEHRQAQNYAEVQLKLDNSTRGLQIEADDVIVTRRLYRSGESEYYLNNDRAR 121 Query: 110 IRVVDELN-----KHLRISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +R + EL S + +D I + ++RR+ ++ + Sbjct: 122 LRDITELFLDSGLGKEAFSIISQGRVDEILNAKPVDRRQIIEESAGVL------------ 169 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222 + + + L + S +E + +L RVE + A +S+ EY+Q + Sbjct: 170 KYKKRKTESLQKLGHTEDNLSRVEDILYDL-----EGRVEPLKAEASIAKEYLQLSKEME 224 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 H + +T ++D+ L E + + Sbjct: 225 HSDVVVTVHDINQYDEENRQLDERLNHLKSQQAEKEGQQ 263 >gi|325661267|ref|ZP_08149894.1| hypothetical protein HMPREF0490_00627 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472774|gb|EGC75985.1| hypothetical protein HMPREF0490_00627 [Lachnospiraceae bacterium 4_1_37FAA] Length = 396 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 101/279 (36%), Gaps = 31/279 (11%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ L F T VG NG GK+N+ +A+ L + R S Sbjct: 1 MYLKSIEVQGFKSFANKILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S+ S ++ + + + + + RS IN R Sbjct: 61 MQDVIFSGTENRRPLSYASVAITLDNADHQLPVDYHEVTVTRKLYRSGESEYLINGTACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ + Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKYLS-VR 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQK 218 +L R L+ S +E Q+ L +I + + E + + Sbjct: 180 KLEDERQNLVRVN----DILSELEKQVEPLRRQSETARIYLKKKEELKIYDINMFLMDTI 235 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 ++ + F D + + K+E K ++ ++ Sbjct: 236 RLKEQMETAQRSFDDANRELTEAKEKQEALKHAYEKQEQ 274 >gi|75762037|ref|ZP_00741949.1| Chromosome partition protein smc [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490483|gb|EAO53787.1| Chromosome partition protein smc [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 971 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 106/334 (31%), Gaps = 59/334 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156 + ++ S + I S S ERR + + + R Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179 Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195 + + ++ R + + Y + +EA + EL Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249 K R + + + L G L D+S +L+E + Sbjct: 240 KWEALRNQFGHNKDEEAKMSTDLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298 Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281 KL R+ + T LIV+ +KA Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332 >gi|328545241|ref|YP_004305350.1| hypothetical protein SL003B_3624 [polymorphum gilvum SL003B-26A1] gi|326414983|gb|ADZ72046.1| hypothetical protein SL003B_3624 [Polymorphum gilvum SL003B-26A1] Length = 443 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 25/40 (62%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46 + L+++ FR +A + F + T+ V +NG GKT +L+A Sbjct: 6 LDKLSLTNFRCFAHCEVEFHPRLTVLVAENGSGKTAVLDA 45 >gi|332799149|ref|YP_004460648.1| chromosome segregation protein SMC [Tepidanaerobacter sp. Re1] gi|332696884|gb|AEE91341.1| chromosome segregation protein SMC [Tepidanaerobacter sp. Re1] Length = 1184 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 95/273 (34%), Gaps = 31/273 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K + + F+++A + L F VG NG GK+NI++AI ++ + R Sbjct: 1 MYLKRIELHGFKSFADRVILEFQPGINAIVGPNGSGKSNIIDAIRWVLGEQSVKTLRGYK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV GS ++ + L + I L R RS +N R Sbjct: 61 LEDVIFAGSNKKKPMGMAEVAITIDNFDNLIPLDYSEIYLVRRTFRSGESEFYLNRTPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D + + + ERR + + +R R + E Sbjct: 121 LKDIQEILIDSGVGKDGYSIISQGQIDEMLTCKAEERRTIFEETAGIVK--YRIRKKEAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + + + + QM L + ++A ++ L++ E Sbjct: 179 KRLEE---TMDNISRIDDIITELLNQMQPLAAQKDVA-LKY-KELAAAFKEIDINLLLFE 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + + K+ + KE +L + + Sbjct: 234 LD---SKEKHIKYIKEKLEDKETLLTQLRNNIE 263 >gi|315038613|ref|YP_004032181.1| chromosome segregation protein SMC [Lactobacillus amylovorus GRL 1112] gi|312276746|gb|ADQ59386.1| chromosome segregation protein SMC [Lactobacillus amylovorus GRL 1112] Length = 1189 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F+ T VG NG GK+NI EAI ++ S + R + Sbjct: 1 MPLTELVLDGFKSFAEKTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV GS F + + + R RS IN+ +R Sbjct: 61 MKDVIFAGSQYRKPLNKAEVTLVFDNKDRELAFDADQVSITRRILRSGDSEFLINNQQVR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141 + D L S + P+ I S +RR Sbjct: 121 MRDVRALFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158 >gi|229098317|ref|ZP_04229264.1| Chromosome partition protein smc [Bacillus cereus Rock3-29] gi|228685215|gb|EEL39146.1| Chromosome partition protein smc [Bacillus cereus Rock3-29] Length = 1189 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS + A V D + +E + R + + Sbjct: 61 MEDVIFAGSETRRAVNVAEVTLTLNNEDQRLPIEYNEVSVTRRVSRSG 108 >gi|229104410|ref|ZP_04235079.1| Chromosome partition protein smc [Bacillus cereus Rock3-28] gi|228679108|gb|EEL33316.1| Chromosome partition protein smc [Bacillus cereus Rock3-28] Length = 1189 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS + A V D + +E + R + + Sbjct: 61 MEDVIFAGSETRRAVNVAEVTLTLNNEDQRLPIEYNEVSVTRRVSRSG 108 >gi|229117334|ref|ZP_04246712.1| Chromosome partition protein smc [Bacillus cereus Rock1-3] gi|228666234|gb|EEL21698.1| Chromosome partition protein smc [Bacillus cereus Rock1-3] Length = 1189 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS + A V D + +E + R + + Sbjct: 61 MEDVIFAGSETRRAVNVAEVTLTLNNEDQRLPIEYNEVSVTRRVSRSG 108 >gi|49481921|gb|AAT66672.1| DNA repair and genetic recombination protein [Geobacillus subterraneus] Length = 573 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 87/271 (32%), Gaps = 39/271 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----XAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGL------ADISIKLETR--------DDRSVRCLQINDVVI-- 110 G+ + E A++ I +IN ++ Sbjct: 57 FGAEKAEIEGLFLLDDERHPCCQKCAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTT 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 V+ E+ L + LD A + + + Sbjct: 117 AVLREIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGAEA---AEALARYRAVYEQHE 171 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L + S E QMA R++++ +E E +L Sbjct: 172 ALAKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDERLMEEK 218 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 F + + A+++ Y +GR +DS+ Sbjct: 219 VRIVNFQKIYEAIQKSYGALAGEGRGLDSIR 249 >gi|20807751|ref|NP_622922.1| ATPase involved in DNA repair [Thermoanaerobacter tengcongensis MB4] gi|254478679|ref|ZP_05092050.1| DNA repair protein RecN [Carboxydibrachium pacificum DSM 12653] gi|20516305|gb|AAM24526.1| ATPases involved in DNA repair [Thermoanaerobacter tengcongensis MB4] gi|214035366|gb|EEB76069.1| DNA repair protein RecN [Carboxydibrachium pacificum DSM 12653] Length = 566 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 95/281 (33%), Gaps = 37/281 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I L + F + G+ G GK+ +++++ L R + D+ R Sbjct: 2 LLNLSIQNVAIIDKLEVEFKEGFNVLTGETGAGKSIVIDSVLLLIGAR-----ANKDIIR 56 Query: 67 IGSPSFFSTFARV--------------EGMEGLADISIKLETRDDRSVRCL-QINDVVI- 110 G + G+ D ++ + +S R ++N ++ Sbjct: 57 SGEERALVEGVFLVDSNKDKIAELLEEAGVSQEEDDTLIISREITKSGRSYSRVNGKIVP 116 Query: 111 --------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 ++ ++ +L+ S +F F D A+ R ++ + ++ Sbjct: 117 LSFLDKIGALLVDILGQHEHQFLLDSSQHLFILD-----NFGDEEFKALKERFKQLLEEY 171 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQKENF 221 +++ + L + + Q+ E+ ++ + + +++M Y ++ F Sbjct: 172 RSVVKEKTSLFKDEREKEQMIDLLRYQIQEIESANLSEEEEQQLIERRNILMNY--EKLF 229 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 + S +G S + K L +D + Sbjct: 230 NAVNSSYKILYEGNGGFSVLDNLHKVVKNLETAFSIDGKLK 270 >gi|303235228|ref|ZP_07321846.1| conserved hypothetical protein [Finegoldia magna BVS033A4] gi|302493542|gb|EFL53330.1| conserved hypothetical protein [Finegoldia magna BVS033A4] Length = 518 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 64/362 (17%), Positives = 113/362 (31%), Gaps = 71/362 (19%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + F+ + + + + I VGDN VGK+++LEAI +S G + V Sbjct: 5 IEKIRLINFKRFKDYTICPNGRLNILVGDNEVGKSSVLEAIELVSSG------NVRRVEN 58 Query: 67 IGSPSFFST-----FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 IG + F + E L ++ I+L + N+ + ++ +R Sbjct: 59 IGLDKLMNVESILCFNKNRKYENLPEMIIELFLKGKFDHTMNGRNN----SLGVISDGIR 114 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR---------RRMIDFERLMRGRNRL 172 + R E FL + +++ ++ L Sbjct: 115 LVCSPNDDYR------NEINEFLKEETLVFPFEYYKIRFSTFSDETYSGYKKKLK--TVL 166 Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + DS + N + + Y ++ I+ Sbjct: 167 INSSNVDSEY--------------------ATNNFIEKMYQRYTEENELERIEHR----- 201 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR---SDLIVDYCDKAITIAHGST 289 KF Q EE K L D + L + S+ ++ Y D G T Sbjct: 202 -SKFRQMKFKFCEENLKLLNSRVPSDKKYKFALQNNYSKIFSNELMIYEDSIALNNRG-T 259 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIG-SQIFM 347 GEQ L G ++L +E HL L + + QIF+ Sbjct: 260 GEQ-------VLIKTDFALEKAGENIDVILFEEPENHLSHTNLKKLISNIENKQTGQIFV 312 Query: 348 TG 349 T Sbjct: 313 TT 314 >gi|42783292|ref|NP_980539.1| DNA repair protein RecN [Bacillus cereus ATCC 10987] gi|42739220|gb|AAS43147.1| DNA repair protein RecN [Bacillus cereus ATCC 10987] Length = 583 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 111/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ + +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENDLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|327183817|gb|AEA32264.1| chromosome segregation protein SMC [Lactobacillus amylovorus GRL 1118] Length = 1189 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F+ T VG NG GK+NI EAI ++ S + R + Sbjct: 1 MPLTELVLDGFKSFAEKTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV GS F + + + R RS IN+ +R Sbjct: 61 MKDVIFAGSQYRKPLNKAEVTLVFDNKDRELAFDADQVSITRRILRSGDSEFLINNQQVR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141 + D L S + P+ I S +RR Sbjct: 121 MRDVRALFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158 >gi|167932978|ref|ZP_02520065.1| FolD bifunctional protein [candidate division TM7 single-cell isolate TM7b] Length = 338 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 G RR F+D + I+P + + +ER ++ RN LL + S + Sbjct: 1 LHGSPSRRRNFIDTFIMHINPHYGTIIRKYERALKQRNTLLKQENASRSKLTI 53 >gi|150399459|ref|YP_001323226.1| chromosome segregation protein SMC [Methanococcus vannielii SB] gi|150012162|gb|ABR54614.1| chromosome segregation protein SMC [Methanococcus vannielii SB] Length = 1189 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 4/104 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 + +++ F+++ + +L T +G NG GK+N ++ I F+ + + R + Sbjct: 4 LSEIHMKNFKSFKNAKLKIQNGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 + TFA V D + +++ R ++IN Sbjct: 64 LITYHGGKR-ETFAEVTLYFNNKDRRMPVDSDKVGISRKVKING 106 >gi|125973444|ref|YP_001037354.1| condensin subunit Smc [Clostridium thermocellum ATCC 27405] gi|125713669|gb|ABN52161.1| condensin subunit Smc [Clostridium thermocellum ATCC 27405] Length = 1190 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 13/125 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A ++L F++ T VG NG GK+NI +AI L + R Sbjct: 1 MHLKRLEIQGFKSFADRIQLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQSAKTLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ F + +G+ I + + R RS IN R Sbjct: 61 MEDVIFAGTEHRKPMGFAEVSLTFDNSDGVLPIDFSEVTVTRRVYRSGESEYMINKTPCR 120 Query: 112 VVDEL 116 + D Sbjct: 121 LKDIY 125 >gi|324994822|gb|EGC26735.1| cell division protein Smc [Streptococcus sanguinis SK678] Length = 1178 Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQVETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ A ++ N L Y +++ +L K + L ++ A L Sbjct: 239 EKLIKAEEDLTNIQQELAAYYGKRDELEVENQTLK----AKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 38.0 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|303229440|ref|ZP_07316230.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] gi|302515976|gb|EFL57928.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] Length = 564 Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++++ I +RN + L F FVG+N VGK+N L+ + + RGF+ + +ADV Sbjct: 1 MFMEWIKIENYRNLVDVELHFHNDINYFVGENAVGKSNFLDLLEQMMNARGFQESDFADV 60 Query: 65 ---TRIGSPSFFS 74 RI FS Sbjct: 61 HRPIRIECKMSFS 73 >gi|228992576|ref|ZP_04152503.1| Chromosome partition protein smc [Bacillus pseudomycoides DSM 12442] gi|228767210|gb|EEM15846.1| Chromosome partition protein smc [Bacillus pseudomycoides DSM 12442] Length = 1189 Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIVGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVSVTRRVSRLGDSDFFINKQSCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|325957094|ref|YP_004292506.1| chromosome segregation protein SMC [Lactobacillus acidophilus 30SC] gi|325333659|gb|ADZ07567.1| chromosome segregation protein SMC [Lactobacillus acidophilus 30SC] Length = 1189 Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F+ T VG NG GK+NI EAI ++ S + R + Sbjct: 1 MPLTELVLDGFKSFAEKTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV GS F + + + R RS IN+ +R Sbjct: 61 MKDVIFAGSQYRKPLNKAEVTLVFDNKDRELAFDADQVSITRRILRSGDSEFLINNQQVR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141 + D L S + P+ I S +RR Sbjct: 121 MRDVRALFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158 >gi|294792205|ref|ZP_06757353.1| hypothetical protein HMPREF0874_00653 [Veillonella sp. 6_1_27] gi|294457435|gb|EFG25797.1| hypothetical protein HMPREF0874_00653 [Veillonella sp. 6_1_27] Length = 564 Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56 + IK+++I +RN A + L F FVG+N VGK+N L+ + + GF Sbjct: 10 MYIKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGF 61 >gi|49481919|gb|AAT66671.1| DNA repair and genetic recombination protein [Geobacillus subterraneus] Length = 573 Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 87/271 (32%), Gaps = 39/271 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGL------ADISIKLETR--------DDRSVRCLQINDVVI-- 110 G+ + E A++ I +IN ++ Sbjct: 57 FGAEKAEIEGLFLLDDERHPCCQKCAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTT 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 V+ E+ L + LD A + + + Sbjct: 117 AVLREIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGAEA---AEALARYRAVYEQHE 171 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L + S E QMA R++++ +E E +L Sbjct: 172 ALAKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDERLMEEK 218 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 F + + A+++ Y +GR +DS+ Sbjct: 219 VRIVNFQKIYEAIQKSYGALAGEGRGLDSIR 249 >gi|268562094|ref|XP_002646601.1| C. briggsae CBR-HIM-1 protein [Caenorhabditis briggsae] Length = 1270 Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 7/145 (4%) Query: 1 MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57 + + + L I F++Y + ++ T +G NG GK+N+++AISF+ R R Sbjct: 6 LPGKGHLHTLEIENFKSYKGKHIIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPTSLR 65 Query: 58 RASYADVTRIGSP--SFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVD 114 Y D+ G+P RV AD +IK R + ++ ++ Sbjct: 66 VKKYTDLI-HGAPINRPVGKKCRVTMNYKYADGTIKAFARGVNNGTSENYLDGQLVTKEA 124 Query: 115 ELNKHLRISWLVPSMDRIFSGLSME 139 + I + + + + ++E Sbjct: 125 YAAEMESIQIFIKARNFLVYQGAIE 149 >gi|332664566|ref|YP_004447354.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333380|gb|AEE50481.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 398 Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 51/373 (13%), Positives = 126/373 (33%), Gaps = 48/373 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VT 65 +K + I F++ A+ + + +F+G+NG GK+NILEA+ F S G R + + Sbjct: 15 LKEITIKNFKSIANDTIELG-RVNVFIGENGCGKSNILEAVGFASAGVENRV--DNENLI 71 Query: 66 RIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL-NKHLRI 122 G + +G + +I++ +D +++ + +E + + Sbjct: 72 SKGVRVAKPSLIISNFKGRKQAKQFNIEILVKDKKNLDLNFTGRDKTFLFEEWEVEEIDN 131 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + ++ + + ++ + + HR ++ + ++ N G+ S Sbjct: 132 NISTVEEPQVEYEKPSKVKSAIENLRQRMKNPHRGNLMKY--VIYSLNTPALRGFTFESR 189 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 E ++ L + E E P +K S + + D A Sbjct: 190 KDP------------IGIYGEGLDILLASFDE----EEMPKLK-SYSYLIPWLEDFFIDA 232 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302 K R ++ P + + + + H + + + ++ Sbjct: 233 KDVLKFKGYKPNRSASALYFVDKHMPKLDN-VFSLENANEGVLHI------LFYLAVTIS 285 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSL 358 H +D I + L+ L + + Q+ +T + ++ D L Sbjct: 286 HY--------TPKFFAIDNIESCLNPHLCRHLMEEICKLAKSQDKQLLITTHNPAILDGL 337 Query: 359 ---NETAKFMRIS 368 ++ + ++ Sbjct: 338 NLFDDEIRLFEVT 350 >gi|225848653|ref|YP_002728816.1| ATP/GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643843|gb|ACN98893.1| ATP/GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 484 Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 63/359 (17%), Positives = 124/359 (34%), Gaps = 64/359 (17%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K++ +NI FR Y + + T+FVG N GK++ILEA+ F A+ Sbjct: 1 MKLRKINIENFRCYKDETEVEIED-LTVFVGANDSGKSSILEALDI------FFNEGRAE 53 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR----VVDELNKH 119 R + AR+EG + I+ E ++ +R L+ N++ I + + Sbjct: 54 -IRFTEDD-INIHARMEGKHDVK-ITCVFEDIPEQFLRRLEENNIPINDSSITISKTFGK 110 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 ++L ++ + + P + +D R Sbjct: 111 NNKTFLNGEELS---------KKLIG-EIKDYLPIYGLFKVD-------RTNTDDNPEIK 153 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 ++E + E +I E+ + I E V +K K + + Sbjct: 154 DPLMFAVEKSLKE--QEIKYKLQEVAEKIKKAI-EDVANGTLDKLK---------KLNGN 201 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299 Y + + + D R IG + + GS G ++++L+ Sbjct: 202 IATELNVYIPDIEELKWRDVFKR---IGIYSDK-------GILLNKRGS-GVRRLILLSF 250 Query: 300 FL--AHARLISNTTGF---APILLLDEISAHLDEDKRNALFRIVTDIGS----QIFMTG 349 FL A + T + I ++E L D++ + ++ S Q+ +T Sbjct: 251 FLFEAERKRYERHTDEIEISTIYAIEEPETSLHPDQQKQFINSLIELSSNEKVQVLLTT 309 >gi|300811714|ref|ZP_07092188.1| chromosome segregation protein SMC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497290|gb|EFK32338.1| chromosome segregation protein SMC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1186 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 36/290 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSV-RCLQINDVVIR 111 DV GS + + + D S + + R +S IN +R Sbjct: 61 MKDVIFAGSQFRKPLNRAEVTMVFDNRDRELDFSADQVSITRRILKSGDNEYLINQQPVR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDR--MVFAIDPRHR----- 156 + D L S+ D+I + + ERR + V + + Sbjct: 121 LRDVRALFLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQGQ 180 Query: 157 -----RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 +I L+ + L + SS + Q A L + I L Sbjct: 181 LETTNDNLIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLDQE 240 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 E QK LS LD + QS L + + + +K D + Sbjct: 241 EREVSQKLAKSQELLS---RLDAEVKQSQAKLAAKRQEFQLESQKRDQVQ 287 >gi|229104802|ref|ZP_04235463.1| DNA repair protein recN [Bacillus cereus Rock3-28] gi|228678675|gb|EEL32891.1| DNA repair protein recN [Bacillus cereus Rock3-28] Length = 583 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ +R+V +D ++ Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|194336900|ref|YP_002018694.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309377|gb|ACF44077.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 422 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 60/367 (16%), Positives = 118/367 (32%), Gaps = 50/367 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI+ + + FR L L FDA T+ NG GKT +++A++ L R + Sbjct: 1 MKIRTVTLKNFRGIEELCLPFDAGLTVIAAVNGGGKTTVVDALAMLLSWLTARTKRDSGK 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 R A+ + L ++ L +++ + + ++ +H R Sbjct: 61 GRYIKDVEIKNGAKFSLLSVQTSSGEWLIAKNRIGTHALSMSNFTV--LQDIVRHFRHQL 118 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 +F+ ++R + D + + R R T FD S Sbjct: 119 ERDHSLPVFTCYPVDR-----------------AVKDTD--LPQRIR--TRHEFDP--IS 155 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + ++ E +E+ + L G L+ F + Sbjct: 156 VYDNLLSSGAN---------FRLFFEWFRE---REDIENENLRAKGILNNVDPMEFLDPQ 203 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI----- 299 + + + + R P R ++V D+ + I S GE + + Sbjct: 204 LQAVRSALEKFLPEYHDFRIKRQPLR--MVVTKGDQELRIDSLSVGE--TCFIALIGDIA 259 Query: 300 -FLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVF 355 LA A ++L+DEI HL + +T + Q +T + Sbjct: 260 RRLAIANPRKQNPLDGEGVILIDEIDLHLHPAWQRRAVTNLTKVFPNVQFVVTTHSPQIL 319 Query: 356 DSLNETA 362 + + Sbjct: 320 SEVAPES 326 >gi|257791119|ref|YP_003181725.1| chromosome segregation protein SMC [Eggerthella lenta DSM 2243] gi|257475016|gb|ACV55336.1| chromosome segregation protein SMC [Eggerthella lenta DSM 2243] Length = 1186 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 87/252 (34%), Gaps = 43/252 (17%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A L + VG NG GK+NI +A+ L + R + Sbjct: 1 MYLKSLVLKGFKSFADRSVLALEPGIIAVVGPNGSGKSNISDAVLWVLGERNAKHLRGQA 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS + S A V+ + +D ++ ++ + R + IN VV R Sbjct: 61 MEDVIFAGSSARKSVGIAEVDLVLDNSDGTLPVDFDEVAVTRRMYRSGESEYLINGVVAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +D L S+D I +RR ++ Sbjct: 121 RMDVLDILHDSGLGTGTHSIISQGSLDSILQSKPEDRRALIEEAAG-------------- 166 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENF 221 +++ + R ++++A +A + + + L Q Sbjct: 167 -VLKHKQRKAKSERK----LAAMDAHLARV-KDVAAEVERQLGPLERKAKRARTYQGLAD 220 Query: 222 PHIKLSLTGFLD 233 LSL+ +D Sbjct: 221 ELADLSLSLAVD 232 >gi|116490532|ref|YP_810076.1| condensin subunit Smc [Oenococcus oeni PSU-1] gi|116091257|gb|ABJ56411.1| condensin subunit Smc [Oenococcus oeni PSU-1] Length = 1184 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 24/223 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +K+K L I+ F+++A + F T VG NG GK+NI+EAI ++ +G R + Sbjct: 1 MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 ADV GS S ++ + +++ R R+ IN V R Sbjct: 61 MADVIFGGSKKRPALGRASVSMTIDNSDHYLHSAFDEVQISRRLYRNGDAEYLINGVKSR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ + +RR ++ + + + + Sbjct: 121 LKDITDLFVDTGLGRESFSIINQGKVEAIFNAKAEDRRAIIEDVAGVFKYKQNKNKSQNQ 180 Query: 164 RLMRGRN--RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204 L N RLL S +E Q A+ + R + Sbjct: 181 LLQTQENLDRLLDIIKEISDRLQPLEKQ-ADEAEEFLSLRKQF 222 >gi|319649603|ref|ZP_08003759.1| smc protein [Bacillus sp. 2_A_57_CT2] gi|317398765|gb|EFV79447.1| smc protein [Bacillus sp. 2_A_57_CT2] Length = 1188 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++ + + F T VG NG GK+NI +AI ++ + R A Sbjct: 1 MFLKRLDVIGFKSFAERITVDFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS S FA V D + +E + R + + Sbjct: 61 MEDVIFAGSDSRRAQNFAEVTLTLDNGDQGLPIEYSEVSVTRRVYRSG 108 >gi|290889933|ref|ZP_06553020.1| hypothetical protein AWRIB429_0410 [Oenococcus oeni AWRIB429] gi|290480543|gb|EFD89180.1| hypothetical protein AWRIB429_0410 [Oenococcus oeni AWRIB429] Length = 1184 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 24/223 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +K+K L I+ F+++A + F T VG NG GK+NI+EAI ++ +G R + Sbjct: 1 MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 ADV GS S ++ + +++ R R+ IN V R Sbjct: 61 MADVIFGGSKKRPALGRASVSMTIDNSDHYLHSAFDEVQISRRLYRNGDAEYLINGVKSR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ + +RR ++ + + + + Sbjct: 121 LKDITDLFVDTGLGRESFSIINQGKVEAIFNAKAEDRRAIIEDVAGVFKYKQNKNKSQNQ 180 Query: 164 RLMRGRN--RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204 L N RLL S +E Q A+ + R + Sbjct: 181 LLQTQENLDRLLDIIKEISDRLQPLEKQ-ADEAEEFLSLRKQF 222 >gi|152976214|ref|YP_001375731.1| chromosome segregation protein SMC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024966|gb|ABS22736.1| chromosome segregation protein SMC [Bacillus cytotoxicus NVH 391-98] Length = 1189 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVAVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ GS + A V D + +E + R + IN R Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSGDSDFFINKQPCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|170079221|ref|YP_001735859.1| RecF/RecN/SMC domain-containing protein [Synechococcus sp. PCC 7002] gi|169886890|gb|ACB00604.1| RecF/RecN/SMC N terminal domain protein [Synechococcus sp. PCC 7002] Length = 1007 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 94/272 (34%), Gaps = 26/272 (9%) Query: 9 FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L + F +Y L F HT G NG GK+++LEA++++ G+ R +S DV + Sbjct: 5 KLTLKNFLSYRDAVLDFTGFHTACICGPNGAGKSSLLEAVTWVIWGKS-RTSSADDVIHM 63 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIRVVDELNKH 119 G F + + I ++ R ++ I IR EL Sbjct: 64 GEMDVRVDFELLCHQQVYRIIRMRSRGRGATLQFQVRSPTGDFTAITGKGIRETQELIDQ 123 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 F + R+ D + A ++ + D +L R L + D Sbjct: 124 EIKL-----DYDTFINSAYLRQGHADEFMVAKPADRKKILSDLLKL--DRYESLAQLAKD 176 Query: 180 SSW-----CSSIEAQMAELGVKINIA--RVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + +E +A ++ + A+ I E Q+EN ++ L Sbjct: 177 KARSFKLKADLLEESLAPQTEQLRAKPQLEAELAAIEQTISEGKQREN--QLQDQLQKIQ 234 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 + F + + +++ + R D T Sbjct: 235 AIAQQRQFLKNQVDTSQQQYQRRHQDLTRLST 266 >gi|84616899|emb|CAJ13793.1| conserved hypothetical protein [Desulfococcus multivorans] Length = 627 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 64/383 (16%), Positives = 124/383 (32%), Gaps = 68/383 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ L I +++N L FD +FVG NG GK+N+ EA+ + FR Sbjct: 1 MRLTSLYIGQYKNLRDFSLSFDGGSFIDVFVGKNGTGKSNLFEALIEI-----FRHIVEF 55 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D + + ++G + T + + + + V+ + H Sbjct: 56 DREKAARDFNYRIGFEIDGKATEIGWNSGKLTIGGKERKTIGKTPLPDNVLIYYSGHNDT 115 Query: 123 SW-LVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRM-------------IDF----- 162 LV + F ++R F + F I P ++ + F Sbjct: 116 VAKLVEQYEEAFRKR-IKRADFDEARYFIGIGPEYKDLLLAVLLMQPDTCRARQFICQKL 174 Query: 163 --------ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214 +++ R + FD + G+ ++ L I Sbjct: 175 GIETVASEAKVVLERPAYAADSRFDIELNDETDRYWKPEGIT-----KTFLDRLHGCINT 229 Query: 215 YV-----QKENFPHIKLSLTGFLDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGP 268 + F + F Q F L +E ++ + + + ++ T+ Sbjct: 230 ATGSPVRSEGYFADPDRYILYFDIANIRQEFADLSPQELFRQFDNLKTLGMLAEITIP-- 287 Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 L + TIAH S G+ + V + + L + I LLDE + L Sbjct: 288 ----LQLT-GGVDATIAHFSDGQFQSVYI---YSIVELFKD---RNCITLLDEPDSFLHP 336 Query: 329 DKRNALFRIVTDIGSQIF-MTGT 350 + + + Q+F +T T Sbjct: 337 EWQFDFLK-------QVFEITDT 352 >gi|310828473|ref|YP_003960830.1| chromosome segregation protein SMC [Eubacterium limosum KIST612] gi|308740207|gb|ADO37867.1| chromosome segregation protein SMC [Eubacterium limosum KIST612] Length = 1192 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 97/278 (34%), Gaps = 37/278 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + L F + VG NG GK+NI +AI L + R Sbjct: 1 MYLKKLALAGFKSFAEPVELEFSKGVSAIVGPNGSGKSNITDAIRWVLGEQSTKSLRGKK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ ++ G I + R RS ++N + Sbjct: 61 MEDVIFSGTEKKKPLNYAEVTLTLDNTSGFTLDNLDEIVITRRLFRSGESEYRMNQKSCK 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K+ ++ I E R ++ V ++ ++ + + E Sbjct: 121 LKDIHELFMDTGLGKNGYSLISQGGIENIIGASPQELRGIVEEAVGIVN--YKTKKQEAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + L IE Q+ L + + E + +E Sbjct: 179 KKLENTQNNLERL---KDILEEIEKQLKPLKAQ-SEKAKEYLEL----------REALKK 224 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + L + + A +++ A+ F +++ + Sbjct: 225 VDLMVFYHNMKDASEQLAAYEKQLAEVRFQIFEIEKKT 262 >gi|74208366|dbj|BAE26376.1| unnamed protein product [Mus musculus] Length = 1233 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 97/280 (34%), Gaps = 34/280 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFVAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM +++ Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E + +E ++ K+ R + +M ++ + + Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234 Query: 224 IKLSLTGFLDGKFDQSFCALKE------EYAKKLFDGRKM 257 I D K ++S LKE + L + K Sbjct: 235 IAYQFLRAEDTK-ERSAGELKEMQDKIVNLQEVLSENEKK 273 >gi|49481923|gb|AAT66673.1| DNA repair and genetic recombination protein [Geobacillus subterraneus] Length = 573 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 87/271 (32%), Gaps = 39/271 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGL------ADISIKLETR--------DDRSVRCLQINDVVI-- 110 G+ + E A++ I +IN ++ Sbjct: 57 FGAEKAEIEGLFLLDDERHPCCQKCAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTT 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 V+ E+ L + LD A + + + Sbjct: 117 AVLREIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGAEA---AEALARYRAVYEQHE 171 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L + S E QMA R++++ +E E +L Sbjct: 172 ALAKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDERLMEEK 218 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 F + + A+++ Y +GR +DS+ Sbjct: 219 VRIVNFQKIYEAIQKSYGALAGEGRGLDSIR 249 >gi|310658887|ref|YP_003936608.1| chromosome condensation and segregation smc ATPase [Clostridium sticklandii DSM 519] gi|308825665|emb|CBH21703.1| chromosome condensation and segregation SMC ATPase [Clostridium sticklandii] Length = 1177 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 21/172 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I F+++ ++F VG NG GK+NIL+AI L + R Sbjct: 1 MYLKKMEIKGFKSFPDKTEILFPHGLISVVGPNGSGKSNILDAIRWVLGEQSMKSLRGDK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVR-CLQINDVVIR 111 DV G+ ++ ++ + + DI I ++ + +S +N+ R Sbjct: 61 LEDVIFSGTEKRKEMNYCEVSMLIDNQDKMIDIDYSEISIKRKAFKSGESQFFLNNKQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 + D + + +D I +G S +RR+ L+ R+ Sbjct: 121 LKDIKELLLDTGIGREGYSIISQGKIDEIVNGNSNQRRKILEEAAGITKFRY 172 >gi|300214419|gb|ADJ78835.1| Chromosome partition protein [Lactobacillus salivarius CECT 5713] Length = 861 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +KIK L ++ F+++A+ + F T VG NG GK+NI EA+ ++ + R + Sbjct: 1 MKIKSLTLNGFKSFANKTIINFQDGLTGIVGPNGSGKSNITEALRWVLGEQSVKNLRGSK 60 Query: 61 YADVTRIGSPSFFST-FARV-------EGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + + A V +G I++ R RS IN+ +R Sbjct: 61 MPDIIFAGSDTRAALNRAEVTLVLDNEDGYLYNQPNEIRITRRIFRSGDSEFFINEKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ +RR ++ Sbjct: 121 LKDVVDLFIDTGLGRESFSIISQGRVESIFNSKPQDRRILIE 162 >gi|229075882|ref|ZP_04208858.1| DNA repair protein recN [Bacillus cereus Rock4-18] gi|228707197|gb|EEL59394.1| DNA repair protein recN [Bacillus cereus Rock4-18] Length = 583 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ +R+V +D ++ Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQTVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|308807783|ref|XP_003081202.1| putative chromosome associated protein (ISS) [Ostreococcus tauri] gi|116059664|emb|CAL55371.1| putative chromosome associated protein (ISS) [Ostreococcus tauri] Length = 1562 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYA 62 ++IK + + F+ Y + FD VG NG GK+N+ AI LS G RA Sbjct: 367 MRIKQVVVEGFKTYREQTVVDFDDGLNCIVGANGSGKSNLFHAIRFVLSDVFGTLRAEDR 426 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 A VE + AD + +E + R R + + Sbjct: 427 QRLLHEGAGHAVMSAYVEIVFDNADGRLPVEREEVRLRRNIGLKK 471 Score = 41.0 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 100/310 (32%), Gaps = 50/310 (16%) Query: 62 ADVTRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 A+ R S + A +E + G +++ + R+ + ++ ++ K + Sbjct: 1228 AEKMRTAQASVEAASAEIEQLRGSQVSMNMSMSEREKEIETLITKTSMLANKREQYQKKI 1287 Query: 121 RISWLVPSM--DRIFSGLSMERRRFLDRMVFAID---PRHRRRMIDFERLMRGRNRLLTE 175 R +P+ DR S R+ L + ++ +++ + +++ R+ L Sbjct: 1288 RELGSLPADAFDRYRSESVSALRKLLGKTNTQLEKLGHVNKKALDQYQQFTEQRSELEKR 1347 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 + SI Q+ + ++ + E I F + ++ Sbjct: 1348 RAEINKAHESIT-QLIDH---LDRKKDEAIER------------TFKQVSVNFRDVFHKL 1391 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD---YCDKAITIAHG----- 287 L +K R D G +DL Y I ++ G Sbjct: 1392 VPGGRGELV--MQRKRVANRDPDEE-----GGARAADLTSFSEKYSGVKIKVSFGQGETM 1444 Query: 288 -----STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI- 341 S G++ VV V + A P L DEI A LD R A+ ++ Sbjct: 1445 QMKQLSGGQKTVVAVALIFA-----IQRCDPMPFYLFDEIDAALDPQYRTAVAHMIKSQA 1499 Query: 342 --GSQIFMTG 349 +Q T Sbjct: 1500 VGKTQFICTT 1509 >gi|55670515|pdb|1W1W|A Chain A, Sc Smc1hd:scc1-C Complex, Atpgs gi|55670516|pdb|1W1W|B Chain B, Sc Smc1hd:scc1-C Complex, Atpgs gi|55670517|pdb|1W1W|C Chain C, Sc Smc1hd:scc1-C Complex, Atpgs gi|55670518|pdb|1W1W|D Chain D, Sc Smc1hd:scc1-C Complex, Atpgs Length = 430 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 65/405 (16%), Positives = 136/405 (33%), Gaps = 58/405 (14%) Query: 6 KIKFLNISEFRNYASLR-LVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61 ++ L +S F++Y + + F ++ T +G NG GK+N+++AISF+ R R Sbjct: 3 RLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNIL 62 Query: 62 ADVT--------------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQIN 106 D+ G+ S A V+ + ++L R+ +I+ Sbjct: 63 KDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKID 122 Query: 107 DVVIRVVDE---------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157 + D L K +++I + +E R + + +I + Sbjct: 123 GKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEY 182 Query: 158 RMIDFERLMRGRNR--LLTEGYFDSSWCSSIEAQMAEL------GVKINIA--RVEMINA 207 + + ++ + + ++ E+ G + + A R E+IN Sbjct: 183 EELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINN 242 Query: 208 LSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRT 264 + + +K F IK + FD L Y + + ++ Sbjct: 243 ETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNA 302 Query: 265 LIGPHRSDLIVDYCDKAITI---------AHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315 + D + K + S GE+ V + + A N+ +P Sbjct: 303 SLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFA-----INSYQPSP 357 Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357 +LDE+ A LD + + + Q + ++F+ Sbjct: 358 FFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK 402 >gi|51244240|ref|YP_064124.1| hypothetical protein DP0388 [Desulfotalea psychrophila LSv54] gi|50875277|emb|CAG35117.1| hypothetical protein DP0388 [Desulfotalea psychrophila LSv54] Length = 450 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +KIK L + +R + + + FD Q T+ V NG GK+ IL+A+ Sbjct: 15 MKIKRLTLHNYRRFTNFEIDFDEQLTVLVAKNGEGKSTILDAV 57 >gi|327490289|gb|EGF22077.1| cell division protein Smc [Streptococcus sanguinis SK1058] Length = 1178 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ + E + + + Y K + ++ L K + L ++ A L Sbjct: 239 EKLTQS-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 36.8 bits (84), Expect = 5.9, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFQSTFGAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|327438874|dbj|BAK15239.1| predicted ATP-dependent endonuclease of the OLD family [Solibacillus silvestris StLB046] Length = 537 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 + +K L I ++ + L FD +I +G+NG GK+ +LEAI G Sbjct: 1 MLLKKLKIYNYKKFEDFSLDFDNNFSIMIGNNGAGKSTLLEAIHLALTG 49 >gi|222525285|ref|YP_002569756.1| SMC domain-containing protein [Chloroflexus sp. Y-400-fl] gi|222449164|gb|ACM53430.1| SMC domain protein [Chloroflexus sp. Y-400-fl] Length = 373 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 62/394 (15%), Positives = 123/394 (31%), Gaps = 77/394 (19%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-D 63 ++++ + + F++ L I +G NG GK+NIL + R Sbjct: 1 MQLQTIKVQGFKSIRELEFSLRP-LNILIGANGSGKSNIL---GVFAFLRAMVERHLQMY 56 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 V R G F + S+++E + R + N + + Sbjct: 57 VARAGGADRILHFGQKNTD------SLQIELWFTKKNRRARGN---------IIANGYRC 101 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 LVP++ DR VFA + +E+ + L + S Sbjct: 102 ALVPAVG--------------DRFVFAEERAFFHD-RRYEKPVE----TLLGSGHEESLL 142 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF----DQS 239 A G I ++ A+ S I+ Y + ++ TG +D + D S Sbjct: 143 P------ASYGRGIPA---DVFEAMQSWIV-YHFHDTSDSARVKQTGDIDDNYWLRQDAS 192 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI--------------- 284 Y ++ + + ++ P D ++ Sbjct: 193 NLTAYLYYIQQQAPDHYRNIVDVIRMVAPFFDDFVLRPSPFNPNKIKLEWRERGSDTYFD 252 Query: 285 AHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDI 341 A+ S G + + + L + F I+LLDE L + L ++ Sbjct: 253 AYALSDGTLRFICLATLL-----LQPARKFPAIILLDEPEMGLHPYAIHVLAELLHSAAT 307 Query: 342 GSQIFMTGTDKSVFDSL-NETAKFMRISNHQALC 374 +Q+ + ++ + E + + Q +C Sbjct: 308 QTQVIVATQSVTLVNQFEPEDIVVVERQDGQPVC 341 >gi|49478569|ref|YP_038235.1| DNA repair protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330125|gb|AAT60771.1| DNA repair protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 579 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 61/282 (21%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 57 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ V+ E+ K L + + ER F+ +R+V +D ++ Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 D+E+L + L S E QMA R+++I I + K Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKI 208 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + L+ F++ + AL + Y DG+ +D++ Sbjct: 209 D-EENNLTEERLQIANFEKIYKALGDAYRSLSADGQGLDNVR 249 >gi|52141633|ref|YP_085189.1| chromosome segregation SMC protein [Bacillus cereus E33L] gi|51975102|gb|AAU16652.1| chromosome segregation SMC protein [Bacillus cereus E33L] Length = 1189 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|327463121|gb|EGF09442.1| cell division protein Smc [Streptococcus sanguinis SK1] gi|327474732|gb|EGF20137.1| cell division protein Smc [Streptococcus sanguinis SK408] Length = 1178 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ + E + + + Y K + ++ L K + L ++ A L Sbjct: 239 EKLTQS-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|294671384|ref|ZP_06736234.1| hypothetical protein NEIELOOT_03092 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306932|gb|EFE48175.1| hypothetical protein NEIELOOT_03092 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 548 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDA----QHTIFVG-DNGVGKTNILEAISFL 50 + IK + + F++YA F ++ I VG +NG GKT +LEAI Sbjct: 1 MYIKRIKLKNFKSYAEAEFEFPPPEKGRNLILVGAENGHGKTTLLEAIYLC 51 >gi|126665992|ref|ZP_01736972.1| ATPase [Marinobacter sp. ELB17] gi|126629314|gb|EAZ99931.1| ATPase [Marinobacter sp. ELB17] Length = 426 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 58/358 (16%), Positives = 111/358 (31%), Gaps = 40/358 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L + FR L L + +FVG NG GK++IL+A + L A+ Sbjct: 1 MHINNLTLQRFRGAQDLSLDLSEKLNVFVGMNGAGKSSILDASAILLSW-------LANR 53 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + S A + G + ++K++ + S N +R + Sbjct: 54 IKHSGASG-RPIAEDDIKNGESSANLKVQLCEQGSY--FGWNLAKVRKGYSKKDLASVLI 110 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + G E ++ +FA P +R + R+ S Sbjct: 111 SASEAAKRIQGAITENVGDVNIPLFAYYPVNRAVLDIPLRI---------REKHQFELLS 161 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 + E + E +E+ + L D F + Sbjct: 162 AYEESLTSGAN---------FRTFFEWFRE---REDLENEHRKYRDDLIKPDDFQFPDPQ 209 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL----VGIF 300 ++ + D P R + V + +T+ S GE+ ++ + Sbjct: 210 LAAVRRALEIFMPDFTELTVRRNPLR--MEVLKKGRRLTVNQLSDGEKCLMAMVGDLARR 267 Query: 301 LAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVF 355 LA A I+++DEI HL + + + ++ Q ++ V Sbjct: 268 LAIANPRRADPLQGDGIVMIDEIDLHLHPKWQRLVVPRLMEVFQNCQFLISTHSPHVI 325 >gi|134045227|ref|YP_001096713.1| condensin subunit Smc [Methanococcus maripaludis C5] gi|132662852|gb|ABO34498.1| condensin subunit Smc [Methanococcus maripaludis C5] Length = 1189 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 4/104 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 + +++ F+++ + +L T +G NG GK+N ++ I F+ + + R + Sbjct: 4 LSEIHMKNFKSFKNSKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 + + FA V D + +E+ R +++N Sbjct: 64 LITYHNGKR-ENFAEVTLFFDNKDRKMPVESDKVGISRKVKLNG 106 >gi|255714819|ref|XP_002553691.1| KLTH0E04774p [Lachancea thermotolerans] gi|238935073|emb|CAR23254.1| KLTH0E04774p [Lachancea thermotolerans] Length = 1170 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNILDAICFVLGISSMATVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E IS+ + + + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFTNDDKANSPIGFESYPKISVTRQIVLGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + L+ + + + + + Sbjct: 120 HRAQQQTVLHLFQSVQLNINNPNFLIMQG 148 >gi|229098646|ref|ZP_04229586.1| DNA repair protein recN [Bacillus cereus Rock3-29] gi|228684725|gb|EEL38663.1| DNA repair protein recN [Bacillus cereus Rock3-29] Length = 583 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ +R+V +D ++ Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQTVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215 D+E+L + L S E QMA R+++I + ++ Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|45358960|ref|NP_988517.1| structural maintenance of chromosome protein [Methanococcus maripaludis S2] gi|45047826|emb|CAF30953.1| structural maintenance of chromosome protein [Methanococcus maripaludis S2] Length = 1189 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 + +++ F+++ + +L T +G NG GK+N ++ I F+ + + R + Sbjct: 4 LSEIHMKNFKSFKNSKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 + + FA V + D + +++ R ++IN Sbjct: 64 LITYHNGKR-ENFAEVTLIFDNKDRKMPVDSDKVGISRKVKING 106 >gi|209528038|ref|ZP_03276518.1| DNA repair protein RecN [Arthrospira maxima CS-328] gi|209491524|gb|EDZ91899.1| DNA repair protein RecN [Arthrospira maxima CS-328] Length = 587 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 23/198 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L I F L L F +F G+ G GK+ IL+A+ + G+ R Sbjct: 2 LISLRIENFALIDHLDLEFGPGLNVFTGETGAGKSIILDAVDAVLGGK-----VDRRSIR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-----RCLQINDVVIRVVDELNKHL- 120 G A E GL D + E R L +N R LN L Sbjct: 57 TGCDRSI-LEACFEVDPGLIDWFRQQEIDLVDGSLVVCCRELVVNQDKFRSRSRLNGILV 115 Query: 121 ----------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGR 169 R + + G +R +LD + R R R+ + + R + Sbjct: 116 GRGIIDRLRDRFVEITAQGQTVQLGKPALQREWLDLYGGSNTLRLRERVGEAYMRAREVQ 175 Query: 170 NRLLTEGYFDSSWCSSIE 187 N L I+ Sbjct: 176 NALQKRRQDSQQRLQRID 193 >gi|313893078|ref|ZP_07826655.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442431|gb|EFR60846.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] Length = 557 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK+++I +RN A + L F FVG+N VGK+N L+ + + GF + DV Sbjct: 1 MYIKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIVMECHGFNEHDFTDV 60 Query: 65 ---TRIGSP 70 RI Sbjct: 61 HKPIRIDFE 69 >gi|312984415|ref|ZP_07791750.1| cell division protein Smc [Lactobacillus crispatus CTV-05] gi|310894190|gb|EFQ43277.1| cell division protein Smc [Lactobacillus crispatus CTV-05] Length = 1189 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + FD T VG NG GK+NI EA+ ++ S + R + Sbjct: 1 MPLTELVLDGFKSFADKTTIHFDDGITGIVGPNGSGKSNITEAVRWVMGESSAKSLRGTN 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV GS F E + + R RS IN+ +R Sbjct: 61 MKDVIFAGSQFRKPLNKAEVTLVFDNKERELAFDSDQVSITRRFLRSGDSEFLINNQQVR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141 + D L S + P+ I S +RR Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158 >gi|228947567|ref|ZP_04109857.1| Chromosome partition protein smc [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812087|gb|EEM58418.1| Chromosome partition protein smc [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 1189 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|295693171|ref|YP_003601781.1| chromosome segregation protein smc [Lactobacillus crispatus ST1] gi|295031277|emb|CBL50756.1| Chromosome segregation protein Smc [Lactobacillus crispatus ST1] Length = 1189 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + FD T VG NG GK+NI EA+ ++ S + R + Sbjct: 1 MPLTELVLDGFKSFADKTTIHFDDGITGIVGPNGSGKSNITEAVRWVMGESSAKSLRGTN 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV GS F E + + R RS IN+ +R Sbjct: 61 MKDVIFAGSQFRKPLNKAEVTLVFDNKERELAFDSDQVSITRRFLRSGDSEFLINNQQVR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141 + D L S + P+ I S +RR Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158 >gi|256269118|gb|EEU04453.1| Smc6p [Saccharomyces cerevisiae JAY291] Length = 1114 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK + + F + L ++ VG+NG GK+ IL AI+ + R +S D Sbjct: 82 IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 141 Query: 64 VTRIGS 69 + R G Sbjct: 142 LIREGC 147 >gi|229019044|ref|ZP_04175884.1| Chromosome partition protein smc [Bacillus cereus AH1273] gi|229025289|ref|ZP_04181709.1| Chromosome partition protein smc [Bacillus cereus AH1272] gi|228736042|gb|EEL86617.1| Chromosome partition protein smc [Bacillus cereus AH1272] gi|228742246|gb|EEL92406.1| Chromosome partition protein smc [Bacillus cereus AH1273] Length = 1189 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNIAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|192293342|ref|YP_001993947.1| chromosome segregation protein SMC [Rhodopseudomonas palustris TIE-1] gi|192287091|gb|ACF03472.1| chromosome segregation protein SMC [Rhodopseudomonas palustris TIE-1] Length = 1154 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K+ L + F+++ + + T VG NG GK+N++EA+ + + D Sbjct: 1 MKLTRLRLHGFKSFVEPTDFMIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRATD 60 Query: 64 VT--------RIGSPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108 + + + ++ + A ++ + R +R + +IN Sbjct: 61 MDAVIFAGSGNRPARNHAEVVMSIDNSDRTAPAALNDADTLDISRRIEREAGSVYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 EVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166 Score = 42.2 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K +++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1042 GKKPQSLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1096 Query: 338 VTDIGSQI---FMTGTDKSV 354 +TD+ F+T T + Sbjct: 1097 LTDMAKTTETRFITITHNPI 1116 >gi|328956989|ref|YP_004374375.1| factor for double strand breaks DNA repair and genetic recombination [Carnobacterium sp. 17-4] gi|328673313|gb|AEB29359.1| factor for double strand breaks DNA repair and genetic recombination [Carnobacterium sp. 17-4] Length = 572 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 65/183 (35%), Gaps = 32/183 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I +F L L F+ T+ G+ G GK+ I++A+ L+ GRG ++ R Sbjct: 2 LQELTIKDFAIIQDLNLSFNRGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SSEFIR 56 Query: 67 IGS-----PSFFSTFAR-----------VEGMEGLADISIKLETRDDRSVRCLQIND--V 108 G+ + FS ++ E I + +IN V Sbjct: 57 HGATKCVLEALFSLEGNSTTYKLLKDYDIDSEEDSVIIQRDIHRSGKN---VCRINGRLV 113 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERR----RFLDRMVFAIDPRHRRRMIDFER 164 I + + + + + + F D+ + + ++ D+++ Sbjct: 114 TIATLRLIGESIIDIHGQNEHQELMN--PERHLSMLDHFGDQELVRLKKNYQETYADYKK 171 Query: 165 LMR 167 + + Sbjct: 172 VKK 174 >gi|229092890|ref|ZP_04224024.1| Chromosome partition protein smc [Bacillus cereus Rock3-42] gi|228690512|gb|EEL44295.1| Chromosome partition protein smc [Bacillus cereus Rock3-42] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|229162784|ref|ZP_04290741.1| Chromosome partition protein smc [Bacillus cereus R309803] gi|228620666|gb|EEK77535.1| Chromosome partition protein smc [Bacillus cereus R309803] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|196042324|ref|ZP_03109600.1| chromosome segregation SMC protein [Bacillus cereus NVH0597-99] gi|196026846|gb|EDX65477.1| chromosome segregation SMC protein [Bacillus cereus NVH0597-99] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|329936093|ref|ZP_08285892.1| ATP-dependent OLD family endonuclease [Streptomyces griseoaurantiacus M045] gi|329304411|gb|EGG48290.1| ATP-dependent OLD family endonuclease [Streptomyces griseoaurantiacus M045] Length = 650 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 51/344 (14%), Positives = 98/344 (28%), Gaps = 52/344 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASY 61 + ++ L I FR+ + + F + T+ VG+N GK+N++EA+ + R R Sbjct: 1 MYLRQLGIKNFRSCYDIEVEFRSGITLLVGENNSGKSNVIEALRLATTPLNRRSTRWFDE 60 Query: 62 ADVT--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 +D++ R G + F A L+ + + R Sbjct: 61 SDLSHGREGQEAQFRATYDGLSAAQRAHYIAALDVETNEAAYTTTYKRDESRQQ-----M 115 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR--NRLLTEGY 177 P D I + + D +R + NRLL Sbjct: 116 RPTVTAGPVD------GPDAEPDKRD----QIAHVYLAPLRDAQRELDSSDGNRLLRIIR 165 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + + + Q E + + + + G L D Sbjct: 166 ----YLTEEDEQ------------EEFRAQANDSFTKLKEHPVLTATTKEIQGHLGELTD 209 Query: 238 QSFCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 E +A+ + G +DL A + V+ Sbjct: 210 SVRGQTVEVTFAEYELHRLARSLRVKMAEAGIPPADLTESGLGYANLLFIA------TVI 263 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + + A + + L++E AHL + L + + Sbjct: 264 LELRNAQHMEL-------TLFLVEEPEAHLHPQLQAVLLDYLQE 300 >gi|305663543|ref|YP_003859831.1| SMC domain protein [Ignisphaera aggregans DSM 17230] gi|304378112|gb|ADM27951.1| SMC domain protein [Ignisphaera aggregans DSM 17230] Length = 765 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 105/301 (34%), Gaps = 41/301 (13%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP-----GRG 55 M++ + ++ + + ++ + +VF VG NG GK++I+++I + GR Sbjct: 1 MSSTVIVRRVRLRNILSHENTDIVFPMGLIALVGPNGAGKSSIVDSIVYAMFVSPKSGRS 60 Query: 56 FRRASYADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV- 113 FR + RIG S V G I + + + + N + Sbjct: 61 FRGEGKKGILRIGTSEGSIELELSVSGKIYRIQRIISVSRPETAKISEVDENGNERVIAV 120 Query: 114 --DELNKHLRISWLVPSMD--------------RIFSGLSMERRRFLDRMVFAIDPRHRR 157 D + +R +PS D R+ R+ + R++ + + Sbjct: 121 GVDNVLDVIRSILGIPSSDAIRLTVVSRQNELSRLIEEQPSRRKELILRLLGLEELEKAK 180 Query: 158 RMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213 + ++ + I +++ L +++ R ++ L+ I Sbjct: 181 DL------LKQALDGAERARIRFDEIRRMINDITNELSRLEKEVSEKRER-LDRLNLEIN 233 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 ++ ++ L D ++ A+ +E + + RT++G R ++ Sbjct: 234 SLRERLSYLEKLRDLGYRYDKL--KNIVAIYKEIKE-----LEKYEDYCRTILGIKRDEV 286 Query: 274 I 274 I Sbjct: 287 I 287 Score = 45.3 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 13/225 (5%) Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213 R+ ++ ++ NR ++E + S EA+ EL KI E + L L+ Sbjct: 539 RYSEIENEYRKISDELNRKISESERIRGFIESSEARKKELNEKIKNLDEE-LKELEKLVK 597 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 Y + + L G L L E Y ++ MD ++ ++ Sbjct: 598 IYPSLDILVNRILGKDGLLAKLLTNEARMLIERYTNRILHELGMD----FSITIDEDFNI 653 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 V I + S GEQ + + + +A A + +LDE + LD ++R Sbjct: 654 SVKTMFGDIDVRGLSGGEQVALSIALRIALAYTVFGRL--PGFFILDEPTQFLDSERRRT 711 Query: 334 LFRIVTDIGS---QIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 +F I+ + Q+ + D V D + K IS + Sbjct: 712 IFEIIKRLSERLPQVLVVTHDVEVVDMAD---KVYYISKEGGRSV 753 >gi|229086401|ref|ZP_04218577.1| Chromosome partition protein smc [Bacillus cereus Rock3-44] gi|228696917|gb|EEL49726.1| Chromosome partition protein smc [Bacillus cereus Rock3-44] Length = 1190 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRKAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|222097293|ref|YP_002531350.1| chromosome segregation smc protein [Bacillus cereus Q1] gi|221241351|gb|ACM14061.1| chromosome segregation SMC protein [Bacillus cereus Q1] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|301055338|ref|YP_003793549.1| chromosome segregation SMC protein [Bacillus anthracis CI] gi|300377507|gb|ADK06411.1| chromosome segregation SMC protein [Bacillus cereus biovar anthracis str. CI] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|218904978|ref|YP_002452812.1| chromosome segregation SMC protein [Bacillus cereus AH820] gi|218536104|gb|ACK88502.1| chromosome segregation SMC protein [Bacillus cereus AH820] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|312965417|ref|ZP_07779649.1| putative exonuclease [Escherichia coli 2362-75] gi|312289837|gb|EFR17725.1| putative exonuclease [Escherichia coli 2362-75] gi|323159374|gb|EFZ45359.1| ATP-dependent exoDNAse [Escherichia coli E128010] Length = 653 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%) Query: 5 IKIKFLNISEFRN--YASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61 +KI+ + + FR + + L F+ + TI VG NG GKT +L+A+S R Sbjct: 1 MKIEKIKLQNFRCFGHEVVELNFEEELTILVGGNGSGKTAVLQAVSRLFGTTSAQRSVQR 60 Query: 62 AD----VTRIGSPSFFSTFAR 78 D + R S S F Sbjct: 61 RDFHIPIDRQELQSGDSLFVE 81 >gi|262282632|ref|ZP_06060400.1| chromosome segregation protein SMC [Streptococcus sp. 2_1_36FAA] gi|262261923|gb|EEY80621.1| chromosome segregation protein SMC [Streptococcus sp. 2_1_36FAA] Length = 1177 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 64/365 (17%), Positives = 130/365 (35%), Gaps = 43/365 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDKFIKNAAKEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-MINALSSLIMEYV 216 + L Y +E AQ A+ ++++ R E ++ L + + Sbjct: 179 SKLAQTQDNLDRLEDIIYELDGQIKPLEKQAQTAKRFLELDQERRELYLDVLVAQMTANK 238 Query: 217 QK-----ENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270 +K EN I+ L+ + + + + + +L D L Sbjct: 239 EKLNQAEENLAKIQEELSAYYSKRDELELENQTLKSKRHELNQTLAADQAKLLELTRLIS 298 Query: 271 S-DLIVDYCDKAITIAHGSTGEQ--KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 + +D + A S E ++ ++ L L+ S LD Sbjct: 299 DLERQIDLSKLESSQAATSRKENEARMAVLAEKLEQTEKDCQAKSENLSLI----SEKLD 354 Query: 328 EDKRN 332 ++++ Sbjct: 355 KNQQE 359 Score = 37.2 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ M+ + + G +DLI+ D Sbjct: 1006 LSAKDLLLTTIEEMNDEVKERFKSTFEAIRESFKMTFKQMFGGGSADLILTEGDLLTAGV 1065 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1066 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1120 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1121 VKRFGDYLNRFDKESQFIV 1139 >gi|262280097|ref|ZP_06057882.1| chromosome segregation ATPase [Acinetobacter calcoaceticus RUH2202] gi|262260448|gb|EEY79181.1| chromosome segregation ATPase [Acinetobacter calcoaceticus RUH2202] Length = 1149 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGSYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P RIF + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E+Q+ A+ Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAD 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLEATSALFQRLIQQSSPLQQEWQQA 296 >gi|190405425|gb|EDV08692.1| hypothetical protein SCRG_04323 [Saccharomyces cerevisiae RM11-1a] Length = 1114 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK + + F + L ++ VG+NG GK+ IL AI+ + R +S D Sbjct: 82 IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 141 Query: 64 VTRIGS 69 + R G Sbjct: 142 LIREGC 147 >gi|167636668|ref|ZP_02394958.1| chromosome segregation SMC protein [Bacillus anthracis str. A0442] gi|170689651|ref|ZP_02880832.1| chromosome segregation SMC protein [Bacillus anthracis str. A0465] gi|196035877|ref|ZP_03103279.1| chromosome segregation SMC protein [Bacillus cereus W] gi|228916485|ref|ZP_04080051.1| Chromosome partition protein smc [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928896|ref|ZP_04091928.1| Chromosome partition protein smc [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229123362|ref|ZP_04252566.1| Chromosome partition protein smc [Bacillus cereus 95/8201] gi|254683444|ref|ZP_05147304.1| chromosome segregation SMC protein [Bacillus anthracis str. CNEVA-9066] gi|254721379|ref|ZP_05183168.1| chromosome segregation SMC protein [Bacillus anthracis str. A1055] gi|254739519|ref|ZP_05197216.1| chromosome segregation SMC protein [Bacillus anthracis str. Kruger B] gi|167527919|gb|EDR90735.1| chromosome segregation SMC protein [Bacillus anthracis str. A0442] gi|170666396|gb|EDT17178.1| chromosome segregation SMC protein [Bacillus anthracis str. A0465] gi|195991526|gb|EDX55492.1| chromosome segregation SMC protein [Bacillus cereus W] gi|228660138|gb|EEL15774.1| Chromosome partition protein smc [Bacillus cereus 95/8201] gi|228830703|gb|EEM76308.1| Chromosome partition protein smc [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843064|gb|EEM88146.1| Chromosome partition protein smc [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|118479070|ref|YP_896221.1| condensin subunit Smc [Bacillus thuringiensis str. Al Hakam] gi|225865829|ref|YP_002751207.1| chromosome segregation SMC protein [Bacillus cereus 03BB102] gi|229186088|ref|ZP_04313257.1| Chromosome partition protein smc [Bacillus cereus BGSC 6E1] gi|118418295|gb|ABK86714.1| condensin subunit Smc [Bacillus thuringiensis str. Al Hakam] gi|225789332|gb|ACO29549.1| chromosome segregation SMC protein [Bacillus cereus 03BB102] gi|228597264|gb|EEK54915.1| Chromosome partition protein smc [Bacillus cereus BGSC 6E1] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|115526051|ref|YP_782962.1| ATP-dependent OLD family endonuclease [Rhodopseudomonas palustris BisA53] gi|115519998|gb|ABJ07982.1| ATP-dependent endonuclease of the OLD family-like protein [Rhodopseudomonas palustris BisA53] Length = 582 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASY 61 + I L + FR+ A + + F + T+ VG+N GK+NI++A+ L+ RR Sbjct: 1 MHIDCLRLQRFRSCADVTVRFHRELTVLVGENNGGKSNIVDALRLLTLPLSGRRDRYPED 60 Query: 62 ADVTRIGSPSFFSTFARVEGM 82 D+ R + + ++ R G+ Sbjct: 61 DDLRRGSTETHYALEGRFAGL 81 >gi|49478913|ref|YP_037909.1| chromosome segregation SMC protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330469|gb|AAT61115.1| chromosome segregation SMC protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|42782940|ref|NP_980187.1| chromosome segregation SMC protein [Bacillus cereus ATCC 10987] gi|217961268|ref|YP_002339836.1| chromosome segregation SMC protein [Bacillus cereus AH187] gi|229140492|ref|ZP_04269047.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST26] gi|229197959|ref|ZP_04324673.1| Chromosome partition protein smc [Bacillus cereus m1293] gi|42738867|gb|AAS42795.1| chromosome segregation SMC protein [Bacillus cereus ATCC 10987] gi|217063100|gb|ACJ77350.1| chromosome segregation SMC protein [Bacillus cereus AH187] gi|228585438|gb|EEK43542.1| Chromosome partition protein smc [Bacillus cereus m1293] gi|228643053|gb|EEK99329.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST26] gi|324327745|gb|ADY23005.1| chromosome segregation SMC protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|328951061|ref|YP_004368396.1| DNA repair protein RecN [Marinithermus hydrothermalis DSM 14884] gi|328451385|gb|AEB12286.1| DNA repair protein RecN [Marinithermus hydrothermalis DSM 14884] Length = 527 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 15/188 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + + L F T+ G+ G GK+ +++A+S L R + + R Sbjct: 2 LERLEVKNLAVLEAATLEFGPGLTVLTGETGAGKSILVDALSLLLGVR-----ADPGLIR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ T A +G R + +I+ V+ + + + Sbjct: 57 PGAEHLLVT-AWFDGR--------PFSRRVGPARSVPRIDGEVVTLRELAEATAARLAIH 107 Query: 127 PSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 + R LD V +R+ + L+ RL Sbjct: 108 AQHAALTLATPRSHRALLDATVPSPTRAAYRKAYATYRALLEEEARLHEAARERERRLDV 167 Query: 186 IEAQMAEL 193 + Q+ E+ Sbjct: 168 LRFQLEEI 175 >gi|301162347|emb|CBW21892.1| putative ATP-dependent endonuclease protein [Bacteroides fragilis 638R] Length = 572 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56 ++IK +++ +RN S + FD VG+N +GK+NIL ++ + RGF Sbjct: 1 MRIKDISVENYRNLNSATITFDESCNFIVGENNLGKSNILNLLNIIFTRRGF 52 >gi|295109854|emb|CBL23807.1| condensin subunit Smc [Ruminococcus obeum A2-162] Length = 1186 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 97/268 (36%), Gaps = 36/268 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++A + F T VG NG GK+N+ +A+ ++ + R + Sbjct: 1 MYLKNIEVYGFKSFAQKINFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGGN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ SF S ++ + + T R R IN R Sbjct: 61 MQDVIFSGTENRKPLSFASVSITLDNSDHKLPVDYNEVTVARRLYRSGESEYLINGSGCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + RR++ + Sbjct: 121 LKDIQEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKITTLK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQK 218 +L R L+ + S + Q+ L +I +A+ + + L + + Sbjct: 180 KLDEERQNLVRV----TDILSELTKQLGPLERQSETARIYLAKRDELKELDINLFLLDHQ 235 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEE 246 L L+ K Q+ L E Sbjct: 236 RTGE-----LLNELETKLSQAQQELDEA 258 Score = 36.0 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 73/220 (33%), Gaps = 31/220 (14%) Query: 150 AIDPRHRRRMIDF----ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 + + ++ ++ R LT+ I+ ++ +LG A + Sbjct: 937 QRESQISYMWEEYEITPNNALQYRKEELTDRQTIKKDVLRIKDEIRKLGSVNVNAIEDYK 996 Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSR-- 262 N L Q E+ + +L G + + +++++ +K D R+ D + Sbjct: 997 NLLERHTFLSAQYEDIVKAEETLEGII----QELDEGMRKQFTEKFRDIQREFDKAFKEL 1052 Query: 263 -----RTLIGPHRSDLI---VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISN 309 TL D++ + + S GE+ + + + A Sbjct: 1053 FGGGKGTLELAEDEDILEAGIRIISQPPGKKLQNMMQLSGGEKALTAIALLFA-----IQ 1107 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 +P LLDEI A LD+ + + +Q + Sbjct: 1108 NLKPSPFCLLDEIEAALDDSNVGRFASYLQKLTKNTQFII 1147 >gi|228935162|ref|ZP_04097989.1| Chromosome partition protein smc [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824527|gb|EEM70332.1| Chromosome partition protein smc [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|227890257|ref|ZP_04008062.1| chromosome segregation protein Smc [Lactobacillus johnsonii ATCC 33200] gi|227849071|gb|EEJ59157.1| chromosome segregation protein Smc [Lactobacillus johnsonii ATCC 33200] Length = 1186 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 48/267 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + ++ L ++ F+++A + F+ T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116 DV GS A VE + D + + + R + N +++ Sbjct: 61 MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLASDNDEVVVTRKILRNGESDYLLNHHPVR 120 Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 K +R ++ M D I + +RR +F E Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ A + + +++ L I ++ + Sbjct: 176 IALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKK 250 LD K Q E ++ Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEE 240 >gi|30263851|ref|NP_846228.1| chromosome segregation SMC protein [Bacillus anthracis str. Ames] gi|47529276|ref|YP_020625.1| chromosome segregation SMC protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186698|ref|YP_029950.1| chromosome segregation SMC protein [Bacillus anthracis str. Sterne] gi|65321176|ref|ZP_00394135.1| COG1196: Chromosome segregation ATPases [Bacillus anthracis str. A2012] gi|165873293|ref|ZP_02217901.1| chromosome segregation SMC protein [Bacillus anthracis str. A0488] gi|167642019|ref|ZP_02400250.1| chromosome segregation SMC protein [Bacillus anthracis str. A0193] gi|170709349|ref|ZP_02899764.1| chromosome segregation SMC protein [Bacillus anthracis str. A0389] gi|177655963|ref|ZP_02937115.1| chromosome segregation SMC protein [Bacillus anthracis str. A0174] gi|190565740|ref|ZP_03018659.1| chromosome segregation SMC protein [Bacillus anthracis Tsiankovskii-I] gi|227813244|ref|YP_002813253.1| chromosome segregation SMC protein [Bacillus anthracis str. CDC 684] gi|229602083|ref|YP_002868085.1| chromosome segregation SMC protein [Bacillus anthracis str. A0248] gi|254735886|ref|ZP_05193592.1| chromosome segregation SMC protein [Bacillus anthracis str. Western North America USA6153] gi|254751173|ref|ZP_05203212.1| chromosome segregation SMC protein [Bacillus anthracis str. Vollum] gi|254756721|ref|ZP_05208750.1| chromosome segregation SMC protein [Bacillus anthracis str. Australia 94] gi|30258495|gb|AAP27714.1| chromosome segregation SMC protein [Bacillus anthracis str. Ames] gi|47504424|gb|AAT33100.1| chromosome segregation SMC protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180625|gb|AAT56001.1| chromosome segregation SMC protein [Bacillus anthracis str. Sterne] gi|164710978|gb|EDR16547.1| chromosome segregation SMC protein [Bacillus anthracis str. A0488] gi|167510018|gb|EDR85433.1| chromosome segregation SMC protein [Bacillus anthracis str. A0193] gi|170125744|gb|EDS94656.1| chromosome segregation SMC protein [Bacillus anthracis str. A0389] gi|172079907|gb|EDT65014.1| chromosome segregation SMC protein [Bacillus anthracis str. A0174] gi|190562659|gb|EDV16625.1| chromosome segregation SMC protein [Bacillus anthracis Tsiankovskii-I] gi|227003537|gb|ACP13280.1| chromosome segregation SMC protein [Bacillus anthracis str. CDC 684] gi|229266491|gb|ACQ48128.1| chromosome segregation SMC protein [Bacillus anthracis str. A0248] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|291459098|ref|ZP_06598488.1| putative RecF/RecN/SMC N domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418352|gb|EFE92071.1| putative RecF/RecN/SMC N domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 1094 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 103/287 (35%), Gaps = 36/287 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60 + +K + I F+++A+ L F T VG NG GK+NI +A+ ++ + R AS Sbjct: 1 MYLKSIEIQGFKSFANKTELDFSRGVTGIVGPNGSGKSNISDAVRWVLGEQKIKQLRGAS 60 Query: 61 YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G ++A V AD ++ L+ + R + +N R Sbjct: 61 MQDVIFSGTQKRKPQSYAYVSITLDNADHALNLDYDELTVTRRIYRSGESEYLLNGTDCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG + ERR D V + + R+ + + + Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGRAEERRALFDEAVGIVKYKRRKDVAERK 180 Query: 164 ----RLMRGR-----NRL------LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 +L R N L L + + S+ Q+ + + ++ + Sbjct: 181 LGEEQLNLQRVTDILNELGRQMEPLRKQSEQAKQYLSLRDQLILYEANLFLREMDAASKE 240 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255 + E + + K + + E + L GR Sbjct: 241 LADSSENEENVQAELASVRAESEELAKKYKEIEEKQRELEEMLAKGR 287 >gi|228986991|ref|ZP_04147117.1| Chromosome partition protein smc [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772769|gb|EEM21209.1| Chromosome partition protein smc [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|325696124|gb|EGD38015.1| cell division protein Smc [Streptococcus sanguinis SK160] Length = 1178 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ + E + + + Y K + ++ L K + L ++ A L Sbjct: 239 EKLTQS-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|151940904|gb|EDN59286.1| structural maintenance of chromosomes [Saccharomyces cerevisiae YJM789] Length = 1114 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK + + F + L ++ VG+NG GK+ IL AI+ + R +S D Sbjct: 82 IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 141 Query: 64 VTRIGS 69 + R G Sbjct: 142 LIREGC 147 >gi|153810623|ref|ZP_01963291.1| hypothetical protein RUMOBE_01007 [Ruminococcus obeum ATCC 29174] gi|149833019|gb|EDM88101.1| hypothetical protein RUMOBE_01007 [Ruminococcus obeum ATCC 29174] Length = 1186 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 26/224 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++A + F T VG NG GK+N+ +A+ ++ + R + Sbjct: 1 MYLKNIEVYGFKSFAQKINFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGGN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ SF S ++ + + + + R RS IN R Sbjct: 61 MQDVIFSGTENRKPLSFASVSITLDNSDHKLPVDYNEVTVTRRLYRSGESEYLINGSGCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + RR+ + Sbjct: 121 LKDIQEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKATTLK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207 +L R L+ + S + Q+ L + AR+ + Sbjct: 180 KLDEERQNLVRV----TDILSELTKQLGPLEKQSETARIYLAKR 219 >gi|91975674|ref|YP_568333.1| chromosome segregation protein SMC [Rhodopseudomonas palustris BisB5] gi|91682130|gb|ABE38432.1| condensin subunit Smc [Rhodopseudomonas palustris BisB5] Length = 1154 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K+ L + F+++ + + T VG NG GK+N++EA+ + + AD Sbjct: 1 MKLTRLRLHGFKSFVEPTDFMIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRAAD 60 Query: 64 VT--------RIGSPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108 + S + ++ + A + +++ R +R + +IN Sbjct: 61 MDAVIFAGSGNRPSRNHAEVVMSIDNSDRTAPAAMNDSEILEISRRIEREAGSQYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 EVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166 Score = 40.3 bits (93), Expect = 0.45, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 11/78 (14%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K +++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1042 GKKPQSLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1096 Query: 338 VTDIGSQIFMTGTDKSVF 355 + + MT T ++ F Sbjct: 1097 LNE------MTATTETRF 1108 >gi|325690807|gb|EGD32808.1| cell division protein Smc [Streptococcus sanguinis SK115] Length = 1178 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194 + + L +G + + AQ+ Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K+ A E + + + Y K + ++ L K + L ++ A L Sbjct: 239 EKLTQA-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294 Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 R + D + L S + E+++ + LA Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLATLSEKLAQIE 336 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|229157424|ref|ZP_04285502.1| Chromosome partition protein smc [Bacillus cereus ATCC 4342] gi|228626151|gb|EEK82900.1| Chromosome partition protein smc [Bacillus cereus ATCC 4342] Length = 1189 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|158335965|ref|YP_001517139.1| RecF/RecN/SMC domain-containing protein [Acaryochloris marina MBIC11017] gi|158306206|gb|ABW27823.1| RecF/RecN/SMC N-terminal domain protein, putative [Acaryochloris marina MBIC11017] Length = 913 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 94/270 (34%), Gaps = 48/270 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +++ + + F+ + F G+NG GKT+ILEAI+++ A++ Sbjct: 1 MEVLSVTLKNFKAHRDRYYEFRPGANAICGENGSGKTSILEAIAWVLFDHSE--YKRAEL 58 Query: 65 TRIGSPSFFSTFARVEGMEGLA----------------DISIKLETRDDRSVRCLQINDV 108 +G+ S + + + ++G ++ KLE + VRC + Sbjct: 59 ISVGAKSAQAMVSFISHLDGRIYEVRRCTSRGYEVHDPQLNRKLELKKLDDVRCWLCEHL 118 Query: 109 VIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMV------------------ 148 + V EL K + +P F + +R++ D ++ Sbjct: 119 GVGVHTELAKLFAETIGIPQGTFTVDFLKSAGDRKKVFDPILKVEEYKQAYDQAQKLTSY 178 Query: 149 --------FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI--N 198 + +++ +E L + + L + ++ Q+AE+ ++ Sbjct: 179 AQAQVQQLEQQLQSYDQQLEGWEALKQQKLELANTLTQQQAQMQTLAQQLAEMQTELQYL 238 Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSL 228 A+ + I L + + L L Sbjct: 239 KAKDQAIQTLEKQVQHLQTQWTSKQEILQL 268 >gi|6323415|ref|NP_013487.1| Smc6p [Saccharomyces cerevisiae S288c] gi|2500793|sp|Q12749|SMC6_YEAST RecName: Full=Structural maintenance of chromosomes protein 6; AltName: Full=DNA repair protein RHC18; AltName: Full=Rad18 homolog gi|609425|gb|AAB67273.1| Ylr383wp [Saccharomyces cerevisiae] gi|1150625|emb|CAA56902.1| RHC18 [Saccharomyces cerevisiae] gi|285813788|tpg|DAA09684.1| TPA: Smc6p [Saccharomyces cerevisiae S288c] Length = 1114 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK + + F + L ++ VG+NG GK+ IL AI+ + R +S D Sbjct: 82 IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 141 Query: 64 VTRIGS 69 + R G Sbjct: 142 LIREGC 147 >gi|325121131|gb|ADY80654.1| putative chromosome segregation ATPase [Acinetobacter calcoaceticus PHEA-2] Length = 1149 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGSYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P R+F + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRVFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E+Q+ AE Sbjct: 180 TLQHLEHTEQN-LSRLDDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLEATSALFQRLIQQSSPLQQEWQQA 296 >gi|262369275|ref|ZP_06062603.1| chromosome segregation ATPase [Acinetobacter johnsonii SH046] gi|262315343|gb|EEY96382.1| chromosome segregation ATPase [Acinetobacter johnsonii SH046] Length = 1150 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 103/293 (35%), Gaps = 50/293 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLHFKDNRTAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGL------ADISIKLETRDDRSVRC-LQINDV 108 DV G+ S S R + G A + ++ + +R + +N Sbjct: 61 MQDVIFTGTAKRKPVSVASVELRFDNTYGKLGGSYNAYTELAVKRQVNRDGKSEYFLNGT 120 Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144 R D E R+ P R+F + RRR Sbjct: 121 KCRRRDITDIFLGTGLGPRSYSIIEQGMINRLVDAKPEEMRVFIEEAAGVSRYQARRR-- 178 Query: 145 DRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 + +D + + E + +R + + L + ++E+Q+ + V++ + Sbjct: 179 -ETLLHLDHT-TQNLSRLEDIASELRSQLKTLKRQAETAIQYKTLESQIRTIKVEVLSFQ 236 Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 E + L EY N + L + + E + + + Sbjct: 237 CEQSSRLQ---QEYTLHMNDLGEQFKLVRSELTTLEHDLTSTSELFQRLIQQS 286 Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + ++A S GE+ + + + A RL +P +LDE+ A LD+ + Sbjct: 1040 GKRNSSLALLSGGEKALTALALVFAIFRL-----NPSPFCVLDEVDAPLDDANVGRFCNL 1094 Query: 338 VTDIGSQI 345 V ++ Q+ Sbjct: 1095 VKELSEQV 1102 >gi|256379444|ref|YP_003103104.1| DNA repair protein RecN [Actinosynnema mirum DSM 43827] gi|255923747|gb|ACU39258.1| DNA repair protein RecN [Actinosynnema mirum DSM 43827] Length = 592 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 96/277 (34%), Gaps = 31/277 (11%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---- 56 M ++I+ L + + L A T+ G+ G GKT ++ + L GR Sbjct: 1 MLAEMRIQGLGVID-----EATLELAAGFTVVTGETGAGKTMVVTGLHLLGGGRAEASRV 55 Query: 57 RRASYADVT--RIGSPSFFSTFARVEGMEGLAD-----ISIKLETRDDRSVRCLQINDVV 109 R + V R +P+ E + G D I+++ D RS L V Sbjct: 56 RNGAERAVVEGRFQAPAGSPAAKVAEEVGGEPDDDGSVIAVRTVGADGRSRAHLGGRSVP 115 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG- 168 + V+ EL + L R+ S E+R LDR + ++R+ Sbjct: 116 VGVLSELAEQLLAVHGQNDQLRLLR--SSEQRAVLDRFAGD---EVAGPLGAYQRVRDEW 170 Query: 169 -RNRLLTEGYFDSSWCSSIEAQMAELG-VKINI------ARVEMINALSSLIMEYVQKEN 220 R SS + EA++ G +I E+++ L +E+ Sbjct: 171 LRVATELRDRTRSSRELAREAELLRHGLAEITAVDPKPGEDAELVDEARRLADADQLRES 230 Query: 221 FPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRK 256 + ++ G DG D L E ++L Sbjct: 231 AAGAQYAVAGSPDGDPDNPGALGLIGEARRRLGASED 267 >gi|116514342|ref|YP_813248.1| chromosome segregation ATPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093657|gb|ABJ58810.1| condensin subunit Smc [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1186 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 36/290 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSV-RCLQINDVVIR 111 DV GS + + + D S + + R +S IN +R Sbjct: 61 MKDVIFAGSQFRKPLNRAEVTMVFDNRDRELDFSADQVSITRRILKSGDNEYLINQQPVR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDR--MVFAIDPRHR----- 156 + D L S+ D+I + + ERR + V + + Sbjct: 121 LRDVRALFLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQRQ 180 Query: 157 -----RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 +I L+ + L + SS + Q A L + I L Sbjct: 181 LETTNDNLIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLDQE 240 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 E QK LS LD + QS L + + + +K D + Sbjct: 241 EREVSQKLAKSQELLS---RLDAEVKQSQAKLAAKRQEFQLESQKRDQVQ 287 >gi|19745654|ref|NP_606790.1| chromosome segregation SMC [Streptococcus pyogenes MGAS8232] gi|19747785|gb|AAL97289.1| putative chromosome segregation SMC [Streptococcus pyogenes MGAS8232] Length = 1179 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|171185553|ref|YP_001794472.1| hypothetical protein Tneu_1095 [Thermoproteus neutrophilus V24Sta] gi|170934765|gb|ACB40026.1| conserved hypothetical protein [Thermoproteus neutrophilus V24Sta] Length = 453 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 24/43 (55%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++ + + F++ L L + VG NG GK+N+LEA+ F Sbjct: 5 VRKVVVRNFKSIGELELELRPGVNLLVGANGAGKSNVLEAVRF 47 >gi|150866808|ref|XP_001386531.2| Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Scheffersomyces stipitis CBS 6054] gi|149388064|gb|ABN68502.2| Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Scheffersomyces stipitis CBS 6054] Length = 1240 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 79/216 (36%), Gaps = 29/216 (13%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61 ++ L + F++Y + ++ F + T +G NG GK+N+++AISF+ R R + Sbjct: 3 RLIGLELHNFKSYRGTTKIGFGSSFFTSIIGPNGAGKSNLMDAISFVLGVRSSHLRSQNL 62 Query: 62 ADVT----RIGSPSFFST--------FARVEGMEGLADISIKLETR--DDRSVRCLQIND 107 D+ R S S A V + D I R ++ND Sbjct: 63 KDLIYRGRRTNGNSDLSVDELEQDPNRAHVTAIYEKDDGEIVKFKRTISSSGNSEYRVND 122 Query: 108 VVIRVVDE---------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHR 156 V + ++ L K +++I S + + ++ + + + Sbjct: 123 VSVTSLNYSLVLKAENILIKARNFLVFQGDVEQIASQSPTDLTKLIENISGSNEFTKEYE 182 Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 ++ER N + + +S + Q+ E Sbjct: 183 SLKEEYERAREFSNSVFSRKRNLNSESRQYKEQLIE 218 >gi|110597191|ref|ZP_01385480.1| Chromosome segregation protein SMC [Chlorobium ferrooxidans DSM 13031] gi|110341382|gb|EAT59847.1| Chromosome segregation protein SMC [Chlorobium ferrooxidans DSM 13031] Length = 1178 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 47/278 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60 + + + + F+++A +R+ FD T VG NG GKTN+++A+ L + R A Sbjct: 1 MYLSKIELFGFKSFAHKVRISFDKGLTAIVGPNGCGKTNVVDAMRWVLGEQKSSLLRSAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 ++ GS S VE + + I T R R +N V R Sbjct: 61 MENIIFNGSKNLKPLSLTEVSITVENTKNVLPIEYTEVTVTRRLYRSGESEFLLNQVPCR 120 Query: 112 VVDELNKHLRISWLVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L+ + I S S ER + + + ++ Sbjct: 121 LKDILDLFTDTGMGSDAYSVIELKMIEEIISNKSEERLKLFEE---------AAGITRYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-----GVKINIARVEMINALSSLIMEYVQK 218 + + +LL D S ++ +AE+ +K+ + + E + L I E Sbjct: 172 QRRKQTFKLLESASRD---LSRVDDVLAEVEKKVRSLKLQVRKAEKLRELKKEIRE---- 224 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + L+L+ + + +++ ++ + Sbjct: 225 -----LDLALSWLSMEELREKLEPMRQRIREEELRNHE 257 >gi|47570281|ref|ZP_00240930.1| reticulocyte binding protein [Bacillus cereus G9241] gi|47553045|gb|EAL11447.1| reticulocyte binding protein [Bacillus cereus G9241] Length = 1189 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|190346209|gb|EDK38239.2| hypothetical protein PGUG_02337 [Meyerozyma guilliermondii ATCC 6260] Length = 1170 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNILDAICFVLGIASMTTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E + IS+ + S + L +N Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFDNSDTSKSPIGFETCSKISVTRQIILGGSSKYL-VNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + LN + + + + + Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148 >gi|93005180|ref|YP_579617.1| SMC protein-like [Psychrobacter cryohalolentis K5] gi|92392858|gb|ABE74133.1| SMC protein-like [Psychrobacter cryohalolentis K5] Length = 1318 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 53/362 (14%), Positives = 125/362 (34%), Gaps = 59/362 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L ++ F+++A+ F T VG NG GK+N+++AI ++ + + R + Sbjct: 1 MRLKSLKLAGFKSFANPTTFTFRHGITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60 Query: 61 YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105 +DV G + A VE + I + + SVR I Sbjct: 61 MSDVIFAGTQDKAAKSAASVELTFEHTQDEQTGIRHEFNLYQELSVRRQVNLEGRSDYFI 120 Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157 N R D L + RI ++ R F++ Sbjct: 121 NGTRCRRRDVIDVFLGTGLGARSYAVIEQGMIGRIVESSPLQLREFIEEAAG-------- 172 Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI--ARVEMINALSSLIMEY 215 + ++ + L + + + +++++ +++ A E L+ + + Sbjct: 173 -VSRYQARREETQKKLEKTKDNLARLHDMQSELVSQQKRLSKQAASAERYEELALTLADI 231 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 Q+ + + K A + + ++ K + D + Sbjct: 232 KQQLAIQQLYQAKHNQQQQKIAHERSATEVATLQADYETLKA------------KQDKLA 279 Query: 276 DYCDKAI---TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 Y ++ A S +Q+ + A +L + + + +++ A L++ ++ Sbjct: 280 TYINQEQWLKDDAQSSHYQQQ---LSYQQAEHQL---SDAKSQLTTIEQQLASLEQQRQQ 333 Query: 333 AL 334 A+ Sbjct: 334 AV 335 >gi|323699541|ref|ZP_08111453.1| hypothetical protein DND132_2133 [Desulfovibrio sp. ND132] gi|323459473|gb|EGB15338.1| hypothetical protein DND132_2133 [Desulfovibrio desulfuricans ND132] Length = 452 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 82/286 (28%), Gaps = 52/286 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + I F + L TI G N GK+ ++EA+ L+ R + A R Sbjct: 2 ITKITIDNFMAHEHTELTLGPGVTILTGANNTGKSAVVEALRCLAT-NPARSPNPALYIR 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ V+ +A + K + + +E ++ ++ V Sbjct: 61 HGAKEA-RVEVEVDDGTRVAWVRTKRWAKYELWT----------PGAEEPEEYHKLQGRV 109 Query: 127 PSM----DRIFSGLSMERRRFLDRMVF-AIDPRHR------------------RRMIDFE 163 P R+ RR +D + DP ++ + Sbjct: 110 PEDVARALRLDQVELETRREAVDVHLGNQRDPVFLLNQPDSVMAEFFAASTESAHLLAMQ 169 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ R R D +A+ + ++ + AL + + E Sbjct: 170 NALKMRVRDAKREERD----------LADQAGR-AAGDLDRLAALPDIALRMEMAETLEA 218 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 + L + + EY L + + L G Sbjct: 219 DAVRLEQQI-----PALETALAEYRN-LTRALTREQAAGEALKGTQ 258 >gi|15674632|ref|NP_268806.1| putative chromosome segregation SMC protein [Streptococcus pyogenes M1 GAS] gi|71910252|ref|YP_281802.1| chromosome partition protein [Streptococcus pyogenes MGAS5005] gi|13621745|gb|AAK33527.1| putative chromosome segregation SMC protein [Streptococcus pyogenes M1 GAS] gi|71853034|gb|AAZ51057.1| chromosome partition protein [Streptococcus pyogenes MGAS5005] Length = 1179 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|331091060|ref|ZP_08339902.1| chromosome segregation protein SMC [Lachnospiraceae bacterium 2_1_46FAA] gi|330405282|gb|EGG84818.1| chromosome segregation protein SMC [Lachnospiraceae bacterium 2_1_46FAA] Length = 1186 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 96/268 (35%), Gaps = 39/268 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ + F T VG NG GK+N+ +A+ L + R S Sbjct: 1 MYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + I + T + R IN + R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNADHQLAIDFQEVTVTRKLYRSGESEYLINGSICR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIV------------ 168 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFP 222 + R +N + + ++ + ++EL +I + S EY+ +KE Sbjct: 169 KFKRRKNMSVKKLEEETQNLLRVTDILSELEKQIGP-----LEKQSEKAKEYLKKKEELK 223 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKK 250 ++L + + ++ + A Sbjct: 224 SYDINLFLMESVRIRKQIGEVERQLANA 251 Score = 36.8 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 35/280 (12%) Query: 87 DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146 +I +K++ Q N + +EL+KH+ +D+ L+ ++ F + Sbjct: 884 EIELKIQNLSQEKEILTQKNKDFLTKREELSKHM------SDLDKESFRLNSKKETFEET 937 Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV---------KI 197 + I+ I + + RN T+ +++++ LG K Sbjct: 938 LEKQINYMWEEYEITYSKARELRNETFTDLSEIKRQIQLLKSEIRGLGSVNVNAIEDYKN 997 Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 R + + ++E KE I L + +F + F + E+ K Sbjct: 998 VSERYDFLKTQYDDLVE--AKETLIQIIEELDTAMRKQFAERFKEIASEFDKVFKQLF-- 1053 Query: 258 DSMSRRTLIGPHRSDLI---VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISN 309 + TL D++ + + S GE+ + + + A Sbjct: 1054 -GGGKGTLELMEDEDILEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQ 1107 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 +P LLDEI A LD+ + + + +Q + Sbjct: 1108 NLKPSPFCLLDEIEAALDDSNVTRFAQYLHKLTKNTQFIV 1147 >gi|325126040|gb|ADY85370.1| Chromosome segregation protein Smc [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1186 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 36/290 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F T VG NG GK+NI EAI ++ + R + Sbjct: 1 MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSV-RCLQINDVVIR 111 DV GS + + + D S + + R +S IN +R Sbjct: 61 MKDVIFAGSQFRKPLNRAEVTMVFDNRDRELDFSADQVSITRRILKSGDNEYLINQQPVR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDR--MVFAIDPRHR----- 156 + D L S+ D+I + + ERR + V + + Sbjct: 121 LRDVRALFLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQRQ 180 Query: 157 -----RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211 +I L+ + L + SS + Q A L + I L Sbjct: 181 LETTNDNLIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLDQE 240 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 E QK LS LD + QS L + + + +K D + Sbjct: 241 EREVSQKLAKSQELLS---RLDAEVKQSQAKLAAKRQEFQLESQKRDQVQ 287 >gi|300726126|ref|ZP_07059583.1| RecF/RecN/SMC N-terminal domain protein [Prevotella bryantii B14] gi|299776596|gb|EFI73149.1| RecF/RecN/SMC N-terminal domain protein [Prevotella bryantii B14] Length = 722 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 95/294 (32%), Gaps = 59/294 (20%) Query: 5 IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + IK + I FR+Y + + F T+ +GDNG GKT EA+ +L F Sbjct: 1 MIIKEICIKNFRSYYGDNNKFEFSDGLTLILGDNGDGKTTFFEALQWL-----FNTTIDK 55 Query: 63 DVTRI-----------GSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQIN---- 106 G S E E + S +E DD + R +N Sbjct: 56 GNIDHVSEMRKSKLDIGEKDEVSVSMLFEHDGEKYVEKSFSVERTDDNNFRIGSLNYIGY 115 Query: 107 -------------DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153 +++ R D + R S + + +D+ D Sbjct: 116 ETSGSERVKVSGKNLIDRCYDAFIQ--RFSMFKGESELNVFNNPAALKDLVDKF---SDI 170 Query: 154 RHRRRMIDFERLMRGR--NRLLTEGYFDSS---WCSSIEAQMAELGVKINIARVEMINAL 208 R ++++ + + L E D S+E Q+ LG +I+ + ++ Sbjct: 171 RKFDDLVEYTTSFKEKANAAYLKEMKSDKKVSGEAKSLELQINRLGEEISTKKQDI---- 226 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 K+ +++ D + +Q ++ +L + + + Sbjct: 227 ---------KDKTTSLEIYSKRLGDLEANQEASERYKDIQSRLKNKEERSRKLK 271 >gi|229031478|ref|ZP_04187478.1| Chromosome partition protein smc [Bacillus cereus AH1271] gi|228729767|gb|EEL80747.1| Chromosome partition protein smc [Bacillus cereus AH1271] Length = 1189 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|229134656|ref|ZP_04263465.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST196] gi|228648702|gb|EEL04728.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST196] Length = 1189 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|153874843|ref|ZP_02002905.1| ATP-binding protein [Beggiatoa sp. PS] gi|152068693|gb|EDN67095.1| ATP-binding protein [Beggiatoa sp. PS] Length = 343 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP-----GRGFRRA 59 +KIK L+I+ F + + F + +G NG GKT+ ++A+ + P + F Sbjct: 1 MKIKDLSITNFTAFEQAQFNFCEGINVLIGANGTGKTHAMKAMYAVVPDSRDWYKIFNLP 60 Query: 60 SYADVTRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 + R S F S ++ + + T+ ++IN Sbjct: 61 KLQYLIRNNSEDKDFVSGITSIQNPNKDC-MEVIFHTKSRDRAAEIKIN 108 >gi|11498637|ref|NP_069865.1| chromosome segregation protein [Archaeoglobus fulgidus DSM 4304] gi|18201999|sp|O29230|RAD50_ARCFU RecName: Full=DNA double-strand break repair rad50 ATPase gi|2649562|gb|AAB90211.1| purine NTPase, putative [Archaeoglobus fulgidus DSM 4304] Length = 886 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L I FR+++ ++ FD + G NG GK++ILEAI G D+ R Sbjct: 4 LKELQIKNFRSHSDSKIEFDTGINLIAGRNGAGKSSILEAILVAFYGLKPATLRKNDLVR 63 Query: 67 IGSPSF 72 + S + Sbjct: 64 VNSSGY 69 Score = 44.9 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 22/201 (10%) Query: 166 MRGRNRLLTEG-YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 ++ R L E +E Q+A K++ R ++ + E + I Sbjct: 677 LKSRLETLRESLQSAEKDLKFLEEQLA----KMDEYRKKV------EVFEKIAIPELTRI 726 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-----SMSRRTLIGPHRSDLIVDYCD 279 + + + + S + E YA ++F+ + + T G + + V Y Sbjct: 727 REKFRKYRNLVAENSMREV-ERYASQIFEELTEGKYSGVRLKKTTERGKEKLKVFVVYQG 785 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + I S GE + + LA + + G P+L+LDE + LDE++R L I T Sbjct: 786 EEREIGFLSGGEIIALGLAFRLALSMFM--IRGKIPLLILDEPTPFLDEERRRKLVDITT 843 Query: 340 D---IGSQIFMTGTDKSVFDS 357 + Q+ + D+ + D+ Sbjct: 844 NYLRKIPQVIIVSHDEELKDA 864 >gi|207342761|gb|EDZ70423.1| YLR383Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 1067 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK + + F + L ++ VG+NG GK+ IL AI+ + R +S D Sbjct: 35 IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 94 Query: 64 VTRIGS 69 + R G Sbjct: 95 LIREGC 100 >gi|311748558|ref|ZP_07722343.1| hypothetical protein ALPR1_19853 [Algoriphagus sp. PR1] gi|126577077|gb|EAZ81325.1| hypothetical protein ALPR1_19853 [Algoriphagus sp. PR1] Length = 631 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 55/367 (14%), Positives = 121/367 (32%), Gaps = 39/367 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + ++I F+ S FD++ I +G+NG KT +++AI L Sbjct: 1 MYLSKVHIQNFKGIKSQEFSFDSKLNIIIGENGSHKTALIDAIRLLYNMG---NPKKDYY 57 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 F T + + I L + + ++ + + I + + Sbjct: 58 ISNDDFHFDKTTSAQATKIEIRYIFDGLSSSEKGALYEYLVIEPTIEYAQITLIYELRAN 117 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 P + ++ +F + + D S Sbjct: 118 NYPKFSYFTGASAEQKADSGTFEIFQ--HYYLGALRD-------------------STND 156 Query: 185 SIEAQMAELGVKI--NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + LG I + R + + +I + L+ ++ D F Sbjct: 157 LLNTKTNMLGSVIKRIVERAKTEDEFKKIIQTANTELLKRDEVLNTRTGVNEHLDDIFKI 216 Query: 243 LKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301 K+ + ++ + K++S+ +I P+ + + S G ++ + I L Sbjct: 217 SKDNQIGMRIEESSKIESIL--NVIKPYLPHDKTKLDNDGFNLWQNSLGFNNLIYIAIIL 274 Query: 302 AHARLIS-NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG----SQIFMTG-----TD 351 + + + +LL++E AHL + L+ + G Q+F+T T Sbjct: 275 GDIKQRTVDNPNQHFVLLIEEPEAHLHPQLQLNLYDFLKTAGSPNNCQLFITSHSPTLTS 334 Query: 352 KSVFDSL 358 K+ D+L Sbjct: 335 KANLDNL 341 >gi|94989949|ref|YP_598049.1| chromosome partition protein smc [Streptococcus pyogenes MGAS10270] gi|94543457|gb|ABF33505.1| Chromosome partition protein smc [Streptococcus pyogenes MGAS10270] Length = 1179 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|78189560|ref|YP_379898.1| ATPase [Chlorobium chlorochromatii CaD3] gi|78171759|gb|ABB28855.1| ATPase [Chlorobium chlorochromatii CaD3] Length = 427 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 64/385 (16%), Positives = 132/385 (34%), Gaps = 83/385 (21%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------- 56 ++I+ L + F+ + S F + VG NG GKT++L+A++ + G F Sbjct: 1 MRIEHLIVKNFKGFVSKEFTFHPNFNLIVGMNGTGKTSMLDALAV-AIGSWFLGFYVDSL 59 Query: 57 --RRASYADV----TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 R+ + DV + + G+ I E R N + I Sbjct: 60 KMRQIRHDDVLLKYIQHSWEHIYPCEVEAYGVVMDRHIKWSRELNTING-RTTYGNALAI 118 Query: 111 RVVDELNKHLRISWLVPSM--DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + EL S L + S R ++ +PR ++ D ++ Sbjct: 119 K---ELALQATRSMLNGDDIILPLISYYGTGR-------LWQ-EPREAFKVSDPRKVANK 167 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 + GYF+ SIE +++ +N L+ I + + Sbjct: 168 ETQSRRTGYFN-----SIEPRLS-------------VNQLTQWIAQQSW----------I 199 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 G+ F +++ + D +K+ D+ ++IV++ ++ Sbjct: 200 AYQEQGQVFPVFNTVQDAIIGCIEDAKKLYFDAKLG---------EVIVEFSSGTQPFSN 250 Query: 287 GSTGEQKVVL----VGIFLAHA------RLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 S G++ ++ + A ++ T G ++L+DE+ HL + + Sbjct: 251 LSDGQRCMLAMVGDIAHKAAKLNPHLGSDVLKETNG---VVLIDELDLHLHPRWQRRVIE 307 Query: 337 IVTDI--GSQIFMTGTDKSVFDSLN 359 + ++ Q T + SL Sbjct: 308 DLRNVFPKIQFICTTHSPFLIQSLR 332 >gi|188586140|ref|YP_001917685.1| ATP-dependent endonuclease family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350827|gb|ACB85097.1| ATP-dependent endonuclease family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 586 Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 63/378 (16%), Positives = 130/378 (34%), Gaps = 44/378 (11%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYA 62 +I++ + I+ FR L+F +HT+FVGDN GK+ ILEA+ L P R FR Sbjct: 3 KIRVAKIKINNFRGIKFSELIF-PEHTVFVGDNNSGKSTILEALDLTLGPERLFRTPVID 61 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-------------INDVV 109 + + + + +I + + ++ R + IN+ Sbjct: 62 E-----HDFYAGEYLDNDNNPINIEIEVVIINLNEEQSRYFRNNIEWWDQDEQALINEPP 116 Query: 110 IRVVDE--LNKHLRISW---LVPSMDRIFSGLSMERRRFLDRMVFAI---DPRHRRRMID 161 D+ + LR+ + D F D + + D R+ + Sbjct: 117 PEKTDKESVQPALRVRFEGNYDSEEDDFFGRTYYASPEVEDGSMTSFTKKDKRYCGFL-- 174 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 F R +R +R L + S I ++ EL + I ++ ++ L + + Sbjct: 175 FLRTLRTGSRAL--SLENGSLLDII-LRLQELKLPIWEEILKQLDQLKIAAPDSEINQIL 231 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 I+ S+ F+ ++ + + L ++ G RSD + + Sbjct: 232 REIESSIHSFVPNEWANNP----QMKVSGLTRQNLKKIITFFMGTGATRSD----GSEHS 283 Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + TG +++ + L+ + I ++E + + + + Sbjct: 284 APFKYQGTGTINTMVLTL-LSMIAELKQQQN--VIFAMEEPEIAIPPHTQKRIIHSICSK 340 Query: 342 GSQIFMTGTDKSVFDSLN 359 Q T V + + Sbjct: 341 SDQAIFTSHSPYVLEEFD 358 >gi|294794069|ref|ZP_06759206.1| hypothetical protein HMPREF0873_00663 [Veillonella sp. 3_1_44] gi|294455639|gb|EFG24011.1| hypothetical protein HMPREF0873_00663 [Veillonella sp. 3_1_44] Length = 564 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56 + IK+++I +RN A + L F FVG+N VGK+N L+ + + GF Sbjct: 10 MYIKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGF 61 >gi|303231370|ref|ZP_07318104.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] gi|302513966|gb|EFL55974.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] Length = 566 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++++ I +RN + L F FVG+N VGK+N L+ + + RGF+ + +ADV Sbjct: 3 MFMEWIKIENYRNLVDIELHFHNDINYFVGENAVGKSNFLDLLEQMMNARGFQESDFADV 62 Query: 65 ---TRIGSPSFFS 74 RI FS Sbjct: 63 HRPIRIECKMSFS 75 >gi|284051026|ref|ZP_06381236.1| DNA repair protein RecN [Arthrospira platensis str. Paraca] Length = 622 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 21/197 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L I F L L +F G+ G GK+ IL+A+ + G+ R Sbjct: 32 LISLRIENFALIDHLDLELGPGLNVFTGETGAGKSIILDAVDAVLGGK-----VDRRSIR 86 Query: 67 IGS-----PSFFSTFARVEGMEGLADISI----------KLETRDDRSVRCLQINDVVIR 111 G + F + +I + +L D+ ++N +++ Sbjct: 87 TGCDRAILEACFEVNPDLIDWFREQEIDLVDGSLVVCCRELVVNQDKFRSKSRLNGILVS 146 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRN 170 R + + G +R +LD + R R+ + + R +N Sbjct: 147 RTIIDGLRDRFVEITAQGQTVQLGKPALQREWLDLYGGSNTIGLRERVSEAYTRAREVQN 206 Query: 171 RLLTEGYFDSSWCSSIE 187 L I+ Sbjct: 207 ALQKRRQDSQQRLQRID 223 >gi|229174514|ref|ZP_04302046.1| Chromosome partition protein smc [Bacillus cereus MM3] gi|228609074|gb|EEK66364.1| Chromosome partition protein smc [Bacillus cereus MM3] Length = 1189 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|257414054|ref|ZP_04745105.2| putative cell division protein Smc [Roseburia intestinalis L1-82] gi|257201360|gb|EEU99644.1| putative cell division protein Smc [Roseburia intestinalis L1-82] Length = 1190 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 26/223 (11%) Query: 1 MTNRIKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGF 56 M + +K + + F+++A+ + F T VG NG GK+N+ +A+ L + Sbjct: 1 MRFSMYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQL 60 Query: 57 RRASYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQIND 107 R AS D+ G+ S+ ++ + + + T R R +N Sbjct: 61 RGASMQDIIFAGTENRKPLSYAYVAITLDNADHKLPVDYEEVTVARRVYRSGESEYLLNG 120 Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159 R+ D + K +++I +G ERR D + + R+ Sbjct: 121 NTCRLKDVTELFYDTGIGKEGYSIIGQGQIEKILNGKPEERRELFDEAAGIVKYKKRKAT 180 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 ++L R L+ S +E Q+ L + ARV Sbjct: 181 AQ-KKLENERENLVRVN----DILSELERQVGPLEKQAEKARV 218 Score = 36.0 bits (82), Expect = 8.6, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%) Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 + +D+ L+ +R + D + + ++E + L + Y D S Sbjct: 921 ISELDKEVFRLNSQREKLNDAREYQTN----YMWQEYELTLHAAMDLRDDTYDDLSTLKK 976 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + AQ+ + K+ V I + Y + + L G ++ +++ Sbjct: 977 MIAQIRDEIRKLGDVNVNAIEDYKEISERYQFLKTQHDDLIEAEKTLIGIIEELDTGMRK 1036 Query: 246 EYAKKLFDGRK------MDSMSRR--TLIGPHRSDLI---VDYCDKAITIAHG-----ST 289 ++ +K + +K + TL D++ + + S Sbjct: 1037 QFMEKFAEIQKQFDTVFKEMFGGGKGTLELVEDEDILECGIRIIAQPPGKKLQNMMQMSG 1096 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 GE+ + + + A +P LLDEI A LD+ + + + +Q + Sbjct: 1097 GEKSLTAIALLFA-----IQNLKPSPFCLLDEIEAALDDSNVTRFAKYLHKLTQNTQFIV 1151 >gi|60680633|ref|YP_210777.1| hypothetical protein BF1102 [Bacteroides fragilis NCTC 9343] gi|60492067|emb|CAH06829.1| conserved hypothetical protein with RecF/RecN/SMC N-terminal domain [Bacteroides fragilis NCTC 9343] Length = 691 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 25/46 (54%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 + I +++ +RN+ + +F+ +G+N GKTN+ AI + Sbjct: 1 MYISKVSLVNYRNFENSFFLFNKGINTIIGENASGKTNLFRAIRLI 46 >gi|304316937|ref|YP_003852082.1| chromosome segregation protein SMC [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778439|gb|ADL68998.1| chromosome segregation protein SMC [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1183 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60 + +K L I F+++A + L F+ T VG NG GK+NI +A+ + + R Sbjct: 1 MFLKRLEIIGFKSFADKVVLNFEKGITAIVGPNGSGKSNISDAVRLVLGEQSIKSLRGNK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV +G+ SF ++ + + + + + RS IN R Sbjct: 61 LEDVIFVGTDKRKPLSFAEVNLTLDNSDHTLPLDFTEVVITRKIFRSGESEFYINKTQCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D + +D I +RR+ + Sbjct: 121 LKDVYELFMDTGIGRDGYSIIGQGKIDEILVSRPEDRRQIFE 162 >gi|291296472|ref|YP_003507870.1| DNA repair protein RecN [Meiothermus ruber DSM 1279] gi|290471431|gb|ADD28850.1| DNA repair protein RecN [Meiothermus ruber DSM 1279] Length = 523 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 84/270 (31%), Gaps = 39/270 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L + + L F T+ G+ G GK+ +++A+S L + + R Sbjct: 2 LERLEVQNLAVLEQVALDFSPGLTVLTGETGAGKSVLVDALSLLLGEK------AEGLVR 55 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G+ + T L + + +I+ V+ + + + + + Sbjct: 56 SGAETLLVTAFFN---------GKSLSRKVAQGRSTARIDGEVVSLRELSEETAQHLTIH 106 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDP----RHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + +R+ LD + P R++ ++ ++R RL Sbjct: 107 AQHASLTLFSRKAQRKLLD---SQVKPDLLVRYQNAYGQYQSILRETERLEAAARERERR 163 Query: 183 CSSIEAQMAELGVKIN-----------IARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 + Q+AE+ R+ + AL + + L L Sbjct: 164 LDILRFQIAEIDQARLVVGEEEQLKQEAERLRHLEALRERVSAAISALGGEGDALGLVTL 223 Query: 232 LD------GKFDQSFCALKEEYAKKLFDGR 255 G+FD +L + L R Sbjct: 224 ASREVKAAGRFDAHLESLSRDLEAALDALR 253 >gi|212638792|ref|YP_002315312.1| DNA repair ATPase [Anoxybacillus flavithermus WK1] gi|212560272|gb|ACJ33327.1| ATPase involved in DNA repair [Anoxybacillus flavithermus WK1] Length = 576 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 78/260 (30%), Gaps = 34/260 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L F+ T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFEKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGS--PSFFSTFARVEGME----GLADISIKLETRDDRSVRCLQINDV----------VI 110 G F +G A++ I + R L IN I Sbjct: 57 YGETKAEIEGLFLLEQGDHPCYSKCAELGIDISDGMIVLRRELTINGKSVCRVNGKLVTI 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRG 168 + E+ L + + + + +ER+ R Sbjct: 117 ATLREIGSTLVDIHGQHEHQELLDESKHLHLLDEYGGERIREALEEYGSLYTAYERVKRQ 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSSLIMEYVQ 217 +L + + Q+ E+ ++ R +++N + + + Sbjct: 177 LQKLNENEQQMAHRLDLLTFQLDEIQKAELQLDEDEQLMEERRKIVNFQKIYEALQSSYE 236 Query: 218 KENFPHIKLSLTGFLDGKFD 237 L G D Sbjct: 237 ALYGEQRGLDWIGLAMNHLD 256 >gi|163941586|ref|YP_001646470.1| chromosome segregation protein SMC [Bacillus weihenstephanensis KBAB4] gi|229013031|ref|ZP_04170196.1| Chromosome partition protein smc [Bacillus mycoides DSM 2048] gi|229168587|ref|ZP_04296310.1| Chromosome partition protein smc [Bacillus cereus AH621] gi|163863783|gb|ABY44842.1| chromosome segregation protein SMC [Bacillus weihenstephanensis KBAB4] gi|228614993|gb|EEK72095.1| Chromosome partition protein smc [Bacillus cereus AH621] gi|228748285|gb|EEL98145.1| Chromosome partition protein smc [Bacillus mycoides DSM 2048] Length = 1189 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|49481925|gb|AAT66674.1| DNA repair and genetic recombination protein [Geobacillus uzenensis] Length = 573 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 85/271 (31%), Gaps = 39/271 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGL------ADISIKLETR--------DDRSVRCLQINDVVIRV 112 G+ + E A++ I +IN ++ Sbjct: 57 FGAEKAEIEGLFLLDDERHPCCQKCAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTT 116 Query: 113 V--DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 E+ L + LD A + + + Sbjct: 117 AVXREIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGAEA---AEALARYRAVYEQHE 171 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L + S E QMA R++++ +E E +L Sbjct: 172 ALAKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDERLMEEK 218 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 F + + A+++ Y +GR +DS+ Sbjct: 219 VRIVNFQKIYEAIQKSYGALAGEGRGLDSIR 249 >gi|229526561|ref|ZP_04415965.1| hypothetical protein VCA_000689 [Vibrio cholerae bv. albensis VL426] gi|229336719|gb|EEO01737.1| hypothetical protein VCA_000689 [Vibrio cholerae bv. albensis VL426] Length = 542 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 68/413 (16%), Positives = 141/413 (34%), Gaps = 85/413 (20%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI-----SFLSPG- 53 + +++ L + +R + SL + F + T+ VG+NG GK++IL+AI F+S Sbjct: 59 SANLRLASLKLIGYRGFESLDITFSQKSNITVLVGNNGSGKSSILDAIQKSLTHFVSRLS 118 Query: 54 -RGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQIN--D 107 R + ++ +F + + E + + + ++N Sbjct: 119 TRSYNGDQLDELDISNGATFVTVIPEFKVAETSFSFELSQSRPMIEPRKKSKFTELNEIG 178 Query: 108 VVIRVV----DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM---I 160 + R+ EL+ L S+ V + + + E L ++ + + + Sbjct: 179 NLYRLANTEKKELSLPLLASYTVERANDVTTKDIEESDEILSSQIWDKSKAYSKSLTGKA 238 Query: 161 DFE--------------------RLMRGRNRLLTEGYFDSSWCSSI--EAQMAELGVKIN 198 DF+ ++++ E +SS +I + AE G + Sbjct: 239 DFKLFFRWFKEQVESENDEVSDIKVIKA-QIESKESEINSSLMKAILSNPETAETGEILI 297 Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 + IN L + E K N + L KF F LK + A Sbjct: 298 KQYKDQINDLQEQLNE---KSNVGNKSLDSVRNAIYKFLPGFSDLKLKRAPL-------- 346 Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT------- 311 D++V + ++ S GE+ ++ + A + T Sbjct: 347 -------------DMVVKKDGQEFSVLQLSQGEK--SVLALI---ADIARRLTMLNPSLA 388 Query: 312 ---GFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359 + ++L+DE+ HL + + + + Q +T V +L+ Sbjct: 389 NPLEGSGLVLIDEVDLHLHPSWQQKIMQRLESTFPNLQFIVTTHSPQVCHTLD 441 >gi|50913819|ref|YP_059791.1| chromosome partition protein smc [Streptococcus pyogenes MGAS10394] gi|50902893|gb|AAT86608.1| Chromosome partition protein smc [Streptococcus pyogenes MGAS10394] Length = 1179 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|299771369|ref|YP_003733395.1| chromosome segregation protein SMC [Acinetobacter sp. DR1] gi|298701457|gb|ADI92022.1| chromosome segregation protein SMC [Acinetobacter sp. DR1] Length = 1149 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGSYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P RIF + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E+Q+ A+ Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRILKIEILSFQAD 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLEATSALFQRLIQQSSPLQQEWQQA 296 >gi|94988069|ref|YP_596170.1| chromosome partition protein [Streptococcus pyogenes MGAS9429] gi|94991955|ref|YP_600054.1| chromosome partition protein smc [Streptococcus pyogenes MGAS2096] gi|94541577|gb|ABF31626.1| chromosome partition protein [Streptococcus pyogenes MGAS9429] gi|94545463|gb|ABF35510.1| Chromosome partition protein smc [Streptococcus pyogenes MGAS2096] Length = 1179 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|27377607|ref|NP_769136.1| chromosome segregation protein [Bradyrhizobium japonicum USDA 110] gi|27350752|dbj|BAC47761.1| chromosome segregation protein [Bradyrhizobium japonicum USDA 110] Length = 1154 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +KI L + F+++ V + T VG NG GK+N++EA+ + + + R A Sbjct: 1 MKITRLRLHGFKSFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSYKSLRAAD 60 Query: 61 YADVTRIGS-PSFFSTFARVEGMEGLADIS----------IKLETRDDR-SVRCLQINDV 108 V GS A V AD + +++ R +R + +IN Sbjct: 61 MDAVIFAGSGNRPARNHAEVTMTIDNADRTAPAAMNDSQLLEISRRIEREAGSVYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166 >gi|85703697|ref|ZP_01034801.1| hypothetical protein ROS217_23187 [Roseovarius sp. 217] gi|85672625|gb|EAQ27482.1| hypothetical protein ROS217_23187 [Roseovarius sp. 217] Length = 674 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Query: 5 IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRR 58 + I+ L + FR + + D + T F+GDNG GKT +L+A+ L S R RR Sbjct: 1 MYIRELRLKNFRCFGDHEEVISLDPEMTAFIGDNGSGKTTVLKALQRLFGSTSNERSLRR 60 >gi|299134656|ref|ZP_07027848.1| chromosome segregation protein SMC [Afipia sp. 1NLS2] gi|298590466|gb|EFI50669.1| chromosome segregation protein SMC [Afipia sp. 1NLS2] Length = 1154 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+ L + F+++ + + + T VG NG GK+N++EA+ + + + R A Sbjct: 1 MKLTRLRLHGFKSFVEATDFLIEPGLTGVVGPNGCGKSNLVEALRWAMGETSYKSLRAAD 60 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108 V G + + ++ + A S +++ R +R + +IN Sbjct: 61 MDAVIFSGSGNRPARNHAEVVMTIDNSDRSAPSSMNDSELLEVSRRIEREAGSVYRINGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQARPDQRRRVLED 166 Score = 39.5 bits (91), Expect = 0.76, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K +++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1042 GKKPQSLSLLSGGEQALTALALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1096 Query: 338 VTDI 341 + ++ Sbjct: 1097 LHEM 1100 >gi|157151450|ref|YP_001450083.1| chromosome segregation protein SMC [Streptococcus gordonii str. Challis substr. CH1] gi|157076244|gb|ABV10927.1| chromosome segregation protein SMC [Streptococcus gordonii str. Challis substr. CH1] Length = 1177 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 60/338 (17%), Positives = 120/338 (35%), Gaps = 39/338 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E + + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITEGLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKNAAKEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-MINALSSLIMEYV 216 + L Y +E AQ A+ ++++ R E ++ L + + Sbjct: 179 SKLAQTQDNLDRLEDIIYELDGQIKPLEKQAQTAKRFLELDQERRELYLDVLVAQMTANK 238 Query: 217 QK-----ENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270 +K EN I+ L+ + + + + + +L D L Sbjct: 239 EKLNQAEENLAKIQEELSAYYSKRDELELENQTLKSKRHELNQTLAADQAKLLELTRLIS 298 Query: 271 S-DLIVDYCDKAITIAHGSTGEQ--KVVLVGIFLAHAR 305 + +D + A S E ++ ++ L Sbjct: 299 DLERQIDLSKLESSQAASSRKENEARMAVLAEKLEQTE 336 Score = 37.2 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ M+ + + G +DLI+ D Sbjct: 1006 LSAKNLLLTTIEEMNDEVKERFKSTFEAIRESFKMTFKQMFGGGSADLILTEGDLLTAGV 1065 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1066 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1120 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1121 VKRFGDYLNRFDKESQFIV 1139 >gi|229061451|ref|ZP_04198796.1| Chromosome partition protein smc [Bacillus cereus AH603] gi|228717874|gb|EEL69522.1| Chromosome partition protein smc [Bacillus cereus AH603] Length = 1189 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I+ F+++ + + F T VG NG GK+NI +AI L + R A Sbjct: 1 MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS + A V D + +E + R + + Sbjct: 61 MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108 >gi|145298233|ref|YP_001141074.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp. salmonicida A449] gi|142851005|gb|ABO89326.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp. salmonicida A449] Length = 1124 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 65/369 (17%), Positives = 120/369 (32%), Gaps = 62/369 (16%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ R+ F A T VG NG GK+N+++A+ ++ S R R + Sbjct: 1 MRLKLIKLAGFKSFVEPTRIEFSADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGEN 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107 DV GS + F + RV G G +IS++ E D S QIN Sbjct: 61 MTDVIFNGSINRSPHGRASVELVFDNPHNRVPGEFGRFTEISVRREVLRDGSN-HYQING 119 Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159 R D L ++ R+ + + F++ R++ R Sbjct: 120 QKCRRKDVTDLFLGTGLGPRSYAIIEQGTVSRLVESRPADLKLFMEEAAG--VSRYKERR 177 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 + E+ +R L S + R + + + S + Sbjct: 178 RETEQRIRHTQENLERLGDIRGELGSRLEHLKAQAE--TAERYKQLKSRSRAARAELIGS 235 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 ++ L ++ E+ L R D TL Sbjct: 236 ELWALETRL------GEAKAELTQAEQALAALDAKRTQDEGRHVTL----------SVAR 279 Query: 280 KAITIAHGSTGEQKVVL---VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 + S +Q++ L L +L G + +R AL Sbjct: 280 QEAQAEQASR-QQQIFLGGQAIARLEQQQLHQTELGRDWQI------------RRQALGE 326 Query: 337 IVTDIGSQI 345 + I +Q+ Sbjct: 327 RIEGIRAQL 335 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 16/177 (9%) Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 ++EAQ+ LG A E A + Q ++ +L+ + ++ Sbjct: 907 RQEIQTLEAQVEALGAINLAALEEYEEAKTRSTYLESQCQDLEQALETLSQAIKRIDKET 966 Query: 240 FCALKEEY---AKKLFDGRKMDSMSRRTLIGPHRSDLIVDY--------CDKAITIAHGS 288 ++ + + L + DL+ K TIA S Sbjct: 967 QIRFRDTFDKVNEDLKSLFPKVFGGGSAWLELTSDDLLEAGVSIMARPPGKKNATIALLS 1026 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 GE+ + + + A RL AP LLDE+ A LDE +V ++ S + Sbjct: 1027 GGEKALTALALVFAIFRL-----NPAPFCLLDEVDAPLDEVNVGRFCSLVKEMSSTV 1078 >gi|139474236|ref|YP_001128952.1| chromosome partition protein [Streptococcus pyogenes str. Manfredo] gi|134272483|emb|CAM30746.1| putative chromosome partition protein [Streptococcus pyogenes str. Manfredo] Length = 1179 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|94993855|ref|YP_601953.1| chromosome partition protein smc [Streptococcus pyogenes MGAS10750] gi|94547363|gb|ABF37409.1| Chromosome partition protein smc [Streptococcus pyogenes MGAS10750] Length = 1179 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|291544314|emb|CBL17423.1| chromosome segregation protein SMC, common bacterial type [Ruminococcus sp. 18P13] Length = 1188 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++ ++L FD T VG NG GK+NI +A+ ++ + R Sbjct: 1 MYLKSLELQGFKSFPDKIKLSFDKGLTAVVGPNGSGKSNIGDAVRWVLGEQSTKTLRGNK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGL---ADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ + F + ++ +G D + + R RS QIN +R Sbjct: 61 MEDVIFSGTEARKPVGFAAVTLTIDNEQGELASEDREVSVTRRLFRSGESEYQINGKNVR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|306827818|ref|ZP_07461088.1| chromosome partition protein smc [Streptococcus pyogenes ATCC 10782] gi|304429988|gb|EFM33027.1| chromosome partition protein smc [Streptococcus pyogenes ATCC 10782] Length = 1179 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|282850579|ref|ZP_06259958.1| hypothetical protein HMPREF1035_1912 [Veillonella parvula ATCC 17745] gi|282580072|gb|EFB85476.1| hypothetical protein HMPREF1035_1912 [Veillonella parvula ATCC 17745] Length = 555 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56 + IK+++I +RN A + L F FVG+N VGK+N L+ + + GF Sbjct: 1 MYIKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGF 52 >gi|254487740|ref|ZP_05100945.1| conserved hypothetical protein [Roseobacter sp. GAI101] gi|214044609|gb|EEB85247.1| conserved hypothetical protein [Roseobacter sp. GAI101] Length = 692 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 + +K + + FR + + F+ T+FVG N GKT+ AI R F + Sbjct: 1 MHLKKITVRNFRRLKDVSIDFEESETVFVGPNNSGKTSATAAI------RSFLSSRD 51 >gi|15789609|ref|NP_279433.1| chromosome segregation protein [Halobacterium sp. NRC-1] gi|169235321|ref|YP_001688521.1| chromosome segregation protein [Halobacterium salinarum R1] gi|10579965|gb|AAG18913.1| chromosome segregation [Halobacterium sp. NRC-1] gi|167726387|emb|CAP13170.1| chromosome segregation protein [Halobacterium salinarum R1] Length = 1190 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 67/385 (17%), Positives = 133/385 (34%), Gaps = 84/385 (21%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + I+ L + F+++A + R+ F T G NG GK+NI++AI F L+ G R + Sbjct: 1 MYIEELVVENFKSFAGTTRIPFYEDFTTISGPNGSGKSNIIDAILFALGLARTTGMRAET 60 Query: 61 YADVT----RIGSPSFFS-TFARVE-------GMEGLADISIKLETRDDRSVRCLQINDV 108 D+ G+ T A VE G+ + ++ + + SV + I Sbjct: 61 LTDLIYNPAHEGADGAAGPTEASVEVVLNNDAGVVSRSQVTTAAGSENVGSVDTITIKRR 120 Query: 109 VIRV----------------VDELNKHLRISWLVPSMDRIFSGL---------SMERRRF 143 V R + ++ + L + + P + + ERR Sbjct: 121 VKRTDDSHYSYYYLNDRSVNLADIQELLAQAGIAPEGYNVVMQGDVTGIINMTAGERREI 180 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 +D + + +F+ + R+ +E ++ E +KI+ R Sbjct: 181 IDEIAG---------VAEFDA--KKRDAF--------EELDVVEERIGEAELKIDEKRDR 221 Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGF------LDGKFDQSFCALKEEYAKKLFDGRKM 257 ++ L+ ++ ++ K G+ + + D S + ++ +G Sbjct: 222 -LDRLADERETALEYQDLQEEKQEYEGYAKAAELEETRADLSATRADIDEQERELEGLTA 280 Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG----- 312 + RR +G +DL + EQ LA R I G Sbjct: 281 ELDERRDTVGRIEADLAALNAEIERKGED----EQ--------LAIKREIEEIKGEVSRL 328 Query: 313 FAPILLLDEISAHLDEDKRNALFRI 337 + ++ D ++R A+ I Sbjct: 329 EDTVAACEDRVQDADAERREAVVEI 353 >gi|18977539|ref|NP_578896.1| chromosome segregation protein [Pyrococcus furiosus DSM 3638] gi|17380251|sp|P58301|RAD50_PYRFU RecName: Full=DNA double-strand break repair rad50 ATPase gi|18893248|gb|AAL81291.1| smc-like protein [Pyrococcus furiosus DSM 3638] Length = 882 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 27/43 (62%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +K++ + + FR+++ + F + +G NG GK+++L+AI Sbjct: 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43 Score = 40.3 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 ++ L V + K + S GE+ + + LA + ++ G +L+LDE + +LDE Sbjct: 774 NKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLA---GEISLLILDEPTPYLDE 830 Query: 329 DKRNALFRIVT---DIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370 ++R L I+ Q+ + D+ + D+ + + + N Sbjct: 831 ERRRKLITIMERYLKKIPQVILVSHDEELKDA-ADHVIRISLENG 874 >gi|212637201|ref|YP_002313726.1| ATPase [Shewanella piezotolerans WP3] gi|212558685|gb|ACJ31139.1| ATPase [Shewanella piezotolerans WP3] Length = 433 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 27/43 (62%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 + I L ++ FR++ L FD + T+ + NG GK+++L+A+ Sbjct: 1 MIIDTLKLTNFRSFEDFELQFDPRLTVLIARNGAGKSSVLDAV 43 >gi|124481768|gb|AAI33261.1| Unknown (protein for IMAGE:6927834) [Xenopus laevis] Length = 466 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 28/262 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + I F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHVKSIIIDGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKATVSITFDNYDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM + + Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E +E ++ K+ R + IM ++ + + Sbjct: 178 KIAAQKTIEKKEAKLKEIQT-ILEEEITPTIHKLKEERSSYLE--YQKIMREIEHLSRLY 234 Query: 224 IKLSLTGFLDGKFDQSFCALKE 245 + + K +S LKE Sbjct: 235 VAYQFVCAEETKV-RSAEELKE 255 >gi|67984422|ref|XP_669517.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56483695|emb|CAI03191.1| hypothetical protein PB301085.00.0 [Plasmodium berghei] Length = 158 Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 + I+ + + F++Y + + F Q G NG GK+N+L+AI F+ R Sbjct: 1 MHIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60 Query: 60 SYADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104 ++ + G ++ ++ RD +++ + Sbjct: 61 RLDELIYKQGQAGITKGSVTIKFNNEEKPSPLQEPYRDMKTITITR 106 >gi|169634134|ref|YP_001707870.1| putative chromosome segregation ATPases [Acinetobacter baumannii SDF] gi|169152926|emb|CAP01967.1| putative chromosome segregation ATPases [Acinetobacter baumannii] Length = 1149 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 103/298 (34%), Gaps = 54/298 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTCEGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P RIF + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGTINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192 + + + R+ D ++ + + L + ++E+Q+ AE Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 V++ +N L + + L T L + Q L++E+ + Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296 >gi|148989270|ref|ZP_01820650.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP6-BS73] gi|147925248|gb|EDK76327.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae SP6-BS73] Length = 106 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 9/89 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG 84 DV G+ S + S ++ +G Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDG 89 >gi|146417278|ref|XP_001484608.1| hypothetical protein PGUG_02337 [Meyerozyma guilliermondii ATCC 6260] Length = 1170 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNILDAICFVLGIASMTTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E + IS+ + S + L +N Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFDNSDTSKSPIGFETCSKISVTRQIILGGSSKYL-VNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + LN + + + + + Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148 >gi|325672991|ref|ZP_08152685.1| ATP-dependent endonuclease [Rhodococcus equi ATCC 33707] gi|325556244|gb|EGD25912.1| ATP-dependent endonuclease [Rhodococcus equi ATCC 33707] Length = 610 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 59/386 (15%), Positives = 117/386 (30%), Gaps = 51/386 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63 +K++ ++++ FR ++ D H++ VG N VGK+ I EA+ L P R FRR + Sbjct: 1 MKVRRISLTNFRGVQRGTVLLD-GHSLLVGRNSVGKSTICEALDLVLGPERLFRRPVVDE 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH---- 119 G+ E + + E + R + + D + Sbjct: 60 YDFYGARYQEEDGVLPEIRIDVVLTELSPEAQRRFKGRLRRWSAESSDFADTTAEVDIVN 119 Query: 120 ---------LRISW---LVPSMDRIFSGL-SMERRRFLDRMVF-------AIDPRHRRRM 159 L + + P+ D G + +D + + P R Sbjct: 120 LDAIDAEWCLPVVFLGRFDPNEDDFVGGTFFAHPEQAIDELTGESEELGAGLKPFVRDDK 179 Query: 160 I----DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215 + R R NR L+ S +I + + + + A + Sbjct: 180 RLCGFLYLRAHRTGNRALSFQRG--SLIDTILRLESRTSGPLWEEALRGVEA----VAVA 233 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA-KKLFDGRKMDSMSRRTLIGPHRSDLI 274 F HI+ + +D + + + ++ D + P Sbjct: 234 HDTSGFAHIRSEIRKRVDRFLNLTEDRDAIDMRVSEVTREHLRDVLRLFVSTQPG----- 288 Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNA 333 + + STG + + + I+ G + I ++E L + Sbjct: 289 ----EHGVPFNRLSTGSLNLFVFAM----LTYIAELKGDESVIFAIEEPEIALPPHAQRR 340 Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSLN 359 L V Q +T V + + Sbjct: 341 LVDFVLHRMGQAIVTSHSPYVIEKFD 366 >gi|268678674|ref|YP_003303105.1| SMC domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268616705|gb|ACZ11070.1| SMC domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 440 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 56/395 (14%), Positives = 121/395 (30%), Gaps = 62/395 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---------RG 55 ++I + I F+ + + F+ + +G NG GK+++L A++ G R Sbjct: 1 MRIDKIEIENFKLFDKVEFSFNEHFNLIIGINGSGKSSLLRALAVALGGWANAYIKDDRN 60 Query: 56 FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 R + R + ++ + + +DR Sbjct: 61 LR-PIEKNEIREIQKDGRFDKTKDTLIKTYGEARVINRYSNDRKANVEWTRRRQENQETS 119 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 L+ I + P+ F + + N + Sbjct: 120 LSG--SIQYENPADGT-----------FSTWYSLNFNTLGSDIL----------NYVDKG 156 Query: 176 GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-----KLS 227 FD + E +A+ + I + + + + N I K Sbjct: 157 RTFDLPLIAVYECDRLWLAKNQLNIEASAKAQYSRFDPYVDCFHTGANHEAIGEWLLKHE 216 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIGPHRSDLIVDYCDKAITIA 285 L + ++K L + + D R +IVD+ DK+I Sbjct: 217 LASLQLKEETPVLLSIKNAVRNALENCTDISFDFEEGR---------VIVDFEDKSIPFE 267 Query: 286 HGSTGEQKVVLVGIFLAHARLI-------SNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 H S G++ ++ + +A I + + ++L+DE+ HL + + + Sbjct: 268 HLSDGQRTILGLFCDIARRAAILNPHFGGEASENTSGVVLIDELDLHLHPKWQMKIIGDL 327 Query: 339 TDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371 + Q T + S+ E K + + + + Sbjct: 328 QKVFPNIQFICTTHSPILLRSI-EKEKIIVLEDGK 361 >gi|196247667|ref|ZP_03146369.1| chromosome segregation protein SMC [Geobacillus sp. G11MC16] gi|196212451|gb|EDY07208.1| chromosome segregation protein SMC [Geobacillus sp. G11MC16] Length = 1187 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 96/277 (34%), Gaps = 29/277 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++A + + F T VG NG GK+NI +AI ++ + R A Sbjct: 1 MFLKRLDVIGFKSFADRVSIDFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSVKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS S ++ +G + + + R R IN R Sbjct: 61 MEDVIFAGSDSRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ I S ERR + + + R++ + + Sbjct: 121 LKDIVDLFLDSGLGKEAFSIIGQGRVEEILSSKPEERRTIFEEAAGVLKYKLRKKKAETK 180 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQ 217 N + Q A + + R E+ + + I + + Sbjct: 181 LAETQDNLQRVNDILHELGQQLEPLRMQ-ASIAKEYLEKREELERFEVALMVHDIEQLHR 239 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 + + + L+ +G+ E + ++L D Sbjct: 240 QWSELNEALNEHQQEEGRLAAELQKT-EAHIEQLRDQ 275 >gi|300692579|ref|YP_003753574.1| hypothetical protein RPSI07_2954 [Ralstonia solanacearum PSI07] gi|299079639|emb|CBJ52317.2| conserved hypothethical protein, nucleoside triphosphate hydrolase domain [Ralstonia solanacearum PSI07] Length = 599 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 64/357 (17%), Positives = 115/357 (32%), Gaps = 66/357 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 +K+ ++IS FRN+ + D + + VG+N VGK+N+L A+ + S R Sbjct: 1 MKLSRIHISNFRNFHEADVELD-GNVVIVGENRVGKSNLLYAMRLIFDPSLPDSAR---- 55 Query: 62 ADVTRIGSPSFF----------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-- 109 ++G F+ + VE E D+ + + D +++D Sbjct: 56 ----QLGQGDFWDGLGESIEDKTITVFVELQEFEDDLDLLAQLTD------FRLDDDPHT 105 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 +R+ E + S D FL A R + R Sbjct: 106 VRLTYEFRPIPGLGRFPQSDDD---------YEFLCYGGEAETKRFGHEVRR-----RIA 151 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 LL S+ R + L V E+ ++ ++ Sbjct: 152 MDLLPALRDAEGDLSTW--------------RRSPLRPLLERAFASVPVEDLEGVRGAVQ 197 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGR---KMDSM----SRRTLIGPHRSDLIVDYCDKAI 282 + D E+ + LF K D T + +L + Sbjct: 198 AATEQLGDFPSVRGLEQALRGLFASMSGPKQDIEPSLGFGTTDLTRLFRNLRLLIDGGLR 257 Query: 283 TIAHGSTGEQKVVLVGIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 TI S G V + + R L+S +L ++E AHL + +++R + Sbjct: 258 TIGEASLGSANVAFLSLKALELRQLMSENRRDHTLLAIEEPEAHLHPHLQRSVYRHL 314 >gi|138894714|ref|YP_001125167.1| chromosome partition protein [Geobacillus thermodenitrificans NG80-2] gi|134266227|gb|ABO66422.1| SMC protein (Chromosome partition protein) [Geobacillus thermodenitrificans NG80-2] Length = 1187 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 96/277 (34%), Gaps = 29/277 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++A + + F T VG NG GK+NI +AI ++ + R A Sbjct: 1 MFLKRLDVIGFKSFADRVSIDFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSVKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS S ++ +G + + + R R IN R Sbjct: 61 MEDVIFAGSDSRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ I S ERR + + + R++ + + Sbjct: 121 LKDIVDLFLDSGLGKEAFSIIGQGRVEEILSSKPEERRTIFEEAAGVLKYKLRKKKAETK 180 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQ 217 N + Q A + + R E+ + + I + + Sbjct: 181 LAETQDNLQRVNDILHELGQQLEPLRMQ-ASIAKEYLEKREELERFEVALMVHDIEQLHR 239 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 + + + L+ +G+ E + ++L D Sbjct: 240 QWSELNEALNEHQQEEGRLAAELQKT-EAHIEQLRDQ 275 >gi|89099260|ref|ZP_01172138.1| DNA repair protein (recombination protein N) [Bacillus sp. NRRL B-14911] gi|89086106|gb|EAR65229.1| DNA repair protein (recombination protein N) [Bacillus sp. NRRL B-14911] Length = 563 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 23/205 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F+ T+ G+ G GK+ I++AI L GRG ++ R Sbjct: 2 LSELSIKNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLVGGRG-----SSEFVR 56 Query: 67 IGSPSF-FSTFARVEGMEG------------LADISIKLETRDDRSVRCL-QINDV--VI 110 G +++G + + D + L R+ + + ++N I Sbjct: 57 HGEQKAEIEGLFQIDGQDHPCYKKSREFGIDIEDGMVVLRRDISRTGKSVCRVNGKLVTI 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + E+ + + +F + +R +E+ + Sbjct: 117 SALREIGSTIIDIHGQHEHQELMDETLHLSLLDQFGSEEIMPALHEYREVFQSYEQTAKK 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL 193 L + I+ Q+ E+ Sbjct: 177 LKNLSENEQQMAHRLDLIQFQLEEI 201 >gi|261379433|ref|ZP_05984006.1| putative DNA sulfur modification protein DndD [Neisseria subflava NJ9703] gi|284797883|gb|EFC53230.1| putative DNA sulfur modification protein DndD [Neisseria subflava NJ9703] Length = 683 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDA----QHTIFVG-DNGVGKTNILEAISFL 50 + IK + + F++YA F ++ I VG +NG GKT +LEAI Sbjct: 1 MYIKRIKLKNFKSYAEAEFEFPPPEKGRNLILVGAENGHGKTTLLEAIYLC 51 Score = 41.4 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 53/222 (23%) Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 + +NR T+ E +A+ + E + + + E QK + Sbjct: 426 KEKNRQETKLAELKRRYEQQEDSLAD-----SDRLREELERVQKELAEANQKLGGAQNSI 480 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY--------- 277 + + + L++ L +K + + DL V Sbjct: 481 ERSQTEANRLKTEWETLQQALIDSLPKQQKAERAEAVCRLI---DDLAVQLRRSKLDAFR 537 Query: 278 --------------------------------CDKAITIAHGSTGEQKVVLVGIFLAHAR 305 AI S GE+K++++ + A Sbjct: 538 KTVSSLHKKIAHDKQIGDIEIGEDGSLSLYSQNGTAIDFQPLSHGEKKILVLTLIAA--- 594 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 ++ T + ++D LD + L + ++ Q+ + Sbjct: 595 -LAEITDYQVPFVVDTPLTSLDTRHCDNLVQYWMNLNRQVII 635 >gi|239624035|ref|ZP_04667066.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522066|gb|EEQ61932.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1186 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I F+++A+ L F T VG NG GK+N+ +A+ ++ + R AS Sbjct: 1 MYLKSIEIQGFKSFANKLLFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGAS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ F ++ + I + + R RS IN R Sbjct: 61 MQDVIFAGTEMRKPQGFAYVAITLDNSDHQLSIDYDEVTVSRRLYRSGESEYMINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + K +D+I SG ERR D Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFD 162 >gi|14521425|ref|NP_126901.1| chromosome segregation protein [Pyrococcus abyssi GE5] gi|18203527|sp|Q9UZC8|RAD50_PYRAB RecName: Full=DNA double-strand break repair rad50 ATPase gi|5458643|emb|CAB50131.1| Rad50 purine ntpase [Pyrococcus abyssi GE5] Length = 880 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRAS 60 +KI+ + + FR++ + F + +G NG GK+++L+AI + R Sbjct: 1 MKIEEVKVYNFRSHEETVVRFRKGINLIIGQNGSGKSSLLDAI-LVGLYWSKKLRLRGLK 59 Query: 61 YADVTRIGSPSFFSTFARVEGMEGL 85 + RIG + E + Sbjct: 60 KDEFRRIGGKGGTRIEIKFENDDSK 84 Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%) Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 +++ L V Y K + + S GE+ + + LA + + G +L+LDE + LDE Sbjct: 772 NKTKLFVVYEGKEVPLTFLSGGERIALGLAFRLALSMYL---VGRIDLLILDEPTPFLDE 828 Query: 329 DKRNALFRIVT---DIGSQIFMTGTDKSVFDS 357 ++R L I+ SQ+ M D+ + D+ Sbjct: 829 ERRRKLLDIMERHLRRISQVIMVSHDEELKDA 860 >gi|316966287|gb|EFV50883.1| putative RecF/RecN/SMC N domain protein [Trichinella spiralis] Length = 1130 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 + +K + + F++Y + F+ G NG GK+NIL+AI F+ R A Sbjct: 25 MHLKRIELEGFKSYRQRTVLDNFNPNFNAITGLNGSGKSNILDAICFVLGITNLNHVRAA 84 Query: 60 SYADVT 65 S D+ Sbjct: 85 SLQDLV 90 >gi|90425846|ref|YP_534216.1| chromosome segregation protein SMC [Rhodopseudomonas palustris BisB18] gi|90107860|gb|ABD89897.1| condensin subunit Smc [Rhodopseudomonas palustris BisB18] Length = 1154 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K+ L + F+++ + + T VG NG GK+N++EA+ + + AD Sbjct: 1 MKLTRLRLHGFKSFVEPTDFLIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRAAD 60 Query: 64 VT--------RIGSPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108 + S + ++ + A + +++ R +R + +IN Sbjct: 61 MDAVIFAGSGNRPSRNHAEVVMTIDNTDRTAPAAMNDQEILEVSRRIEREAGSVYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166 Score = 41.0 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K T++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1042 GKKPQTLSLLSGGEQALTALSLIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1096 Query: 338 VTDIGSQIFMTGTDKSVF 355 + + MT T ++ F Sbjct: 1097 LNE------MTSTTETRF 1108 >gi|197336139|ref|YP_002155787.1| RecF/RecN/SMC N domain protein [Vibrio fischeri MJ11] gi|197317629|gb|ACH67076.1| RecF/RecN/SMC N domain protein [Vibrio fischeri MJ11] Length = 648 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 61/383 (15%), Positives = 119/383 (31%), Gaps = 47/383 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRA 59 + + L FR + + + + VG+NG GKT ++ AI L GR + Sbjct: 1 MYLSKLKAEGFRCFDKGFSVKLTDELNVIVGENGAGKTAVISAIRQLFQDSESGRYSVTS 60 Query: 60 SY--ADVTRIG-SPSFFSTFARVEGMEGLADIS-IKLETRDDRSVRCLQINDVVIR---V 112 G + + FS A +G++ ++ + D ++ LQ + IR Sbjct: 61 DDFFNPFVAGGKAATSFSICAEFDGLDVKDKVAFLPWVGSSDTALLNLQAENKEIRGRFK 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 + S P + + + + R + + R +L++ NR Sbjct: 121 KVIWGGKSKSSQFDPELLDLVQCIYLPPLRDAESKLSN------GRQSRLSKLLKALNRK 174 Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + +EA + + I + LI E + K H + Sbjct: 175 QLKQCRKDDKLHPLEASLKSFNESLATDDKLSIKDANKLITENLTKAIGHHFGQKTSIQF 234 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 + F + E F + + + S G Sbjct: 235 A---ESDFTKISESLTLMFFPDLSAE------------DQELFRDLSQN------SLGYN 273 Query: 293 KVVLVGIFLAHARLISNTTGFAPI--LLLDEISAHLDEDKRNALFRIV-----TDIGSQI 345 ++ + +A L + LL++E AHL + L + + Q+ Sbjct: 274 NLLYIASIMAELTLDEDDEEQPIFKLLLIEEPEAHLHPQLQIRLLTHLKSVAEKNKNVQV 333 Query: 346 FMTGTDKSVFDSLNETAKFMRIS 368 +T T +V S E + +S Sbjct: 334 IVT-THSTVLASSVELESIIHLS 355 >gi|225023576|ref|ZP_03712768.1| hypothetical protein EIKCOROL_00435 [Eikenella corrodens ATCC 23834] gi|224943671|gb|EEG24880.1| hypothetical protein EIKCOROL_00435 [Eikenella corrodens ATCC 23834] Length = 683 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDA----QHTIFVG-DNGVGKTNILEAISFL 50 + IK + + F++YA F ++ I VG +NG GKT +LEAI Sbjct: 1 MYIKRIKLKNFKSYAEAEFEFPPPEKGRNLILVGAENGHGKTTLLEAIYLC 51 Score = 41.0 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 53/222 (23%) Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 + +NR T+ E +A+ + E + + + E QK + Sbjct: 426 KEKNRQETKLAELKRRYEQQEDSLAD-----SDRLREELERVQKELAEANQKLGGAQNSI 480 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY--------- 277 + + + L++ L +K + + DL V Sbjct: 481 ERSQTEANRLKTDWETLQQALIDSLPKQQKAERAEAVCRMI---DDLAVQLRRSKLDAFR 537 Query: 278 --------------------------------CDKAITIAHGSTGEQKVVLVGIFLAHAR 305 AI S GE+K++++ + A Sbjct: 538 KTVSSLHKKIAHDKQIGDIEIGEDGSLSLYSQNGTAINFQPLSHGEKKILVLTLIAA--- 594 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347 ++ T + ++D LD N L + ++ Q+ + Sbjct: 595 -LAEITDYQVPFVVDTPLTSLDTRHCNNLVQYWMNLNRQVII 635 >gi|227878859|ref|ZP_03996765.1| chromosome segregation protein Smc [Lactobacillus crispatus JV-V01] gi|256843376|ref|ZP_05548864.1| chromosome segregation protein SMC [Lactobacillus crispatus 125-2-CHN] gi|256849802|ref|ZP_05555233.1| chromosome segregation protein Smc [Lactobacillus crispatus MV-1A-US] gi|262046953|ref|ZP_06019913.1| chromosome segregation protein SMC [Lactobacillus crispatus MV-3A-US] gi|227861550|gb|EEJ69163.1| chromosome segregation protein Smc [Lactobacillus crispatus JV-V01] gi|256614796|gb|EEU19997.1| chromosome segregation protein SMC [Lactobacillus crispatus 125-2-CHN] gi|256713291|gb|EEU28281.1| chromosome segregation protein Smc [Lactobacillus crispatus MV-1A-US] gi|260572935|gb|EEX29495.1| chromosome segregation protein SMC [Lactobacillus crispatus MV-3A-US] Length = 1189 Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + FD T VG NG GK+NI EA+ ++ S + R + Sbjct: 1 MPLTELVLDGFKSFADKTTIHFDDGITGIVGPNGSGKSNITEAVRWVMGESSAKSLRGTN 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV GS F + + + R RS IN+ +R Sbjct: 61 MKDVIFAGSQFRKPLNKAEVTLVFDNKKRELAFNSDQVSITRRILRSGDSEFLINNQQVR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141 + D L S + P+ I S +RR Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158 >gi|164662000|ref|XP_001732122.1| hypothetical protein MGL_0715 [Malassezia globosa CBS 7966] gi|159106024|gb|EDP44908.1| hypothetical protein MGL_0715 [Malassezia globosa CBS 7966] Length = 1113 Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 98/283 (34%), Gaps = 42/283 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 I+ +++ F + +L + + +G NG GK+ IL AI+ G+ R +S D Sbjct: 110 IERVDMINFMCHRNLSIGLGPRINFIIGHNGSGKSAILTAITIALGGKATTTSRGSSLKD 169 Query: 64 VTRIGSPSF-FSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVIRV-- 112 R GS + R +G + I ++ T + + + ++ Sbjct: 170 FIREGSSAAEVRVRMRNQGSDAYRPDVYGHAITIERRIHTDGAGTWKIKNADGKIVSTKR 229 Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-------RMVFAIDPRHRRRMIDFE 163 +D + + I P I S + R+FL F + + ++E Sbjct: 230 EELDAICDYANIQVDNP--MNILSQDAA--RQFLGSSQPEDKYSFFLRGTQLTQLAQEYE 285 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---GVKINIARVEM--INALSSLIMEYVQK 218 + R+ +E + E +I ARVE ++AL ++ + Q Sbjct: 286 LIQTNVQRMKRAIRMTEDVLPDLEREAREANDKWHQIEQARVEQEKLDALKEELV-WSQV 344 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + +L LD + L R+ DS+ Sbjct: 345 IAKEKERAALESKLDHAHRK---------HAALEKRREDDSLR 378 >gi|45358904|ref|NP_988461.1| SMC domain-containing protein [Methanococcus maripaludis S2] gi|49036441|sp|P62134|RAD50_METMP RecName: Full=DNA double-strand break repair rad50 ATPase gi|45047770|emb|CAF30897.1| DNA double-strand break repair rad50 ATPase [Methanococcus maripaludis S2] Length = 993 Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 102/274 (37%), Gaps = 48/274 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASY 61 + IK + + FR++ + + F T +G NG GK++I +A++F G FR Sbjct: 1 MIIKNIKMENFRSHRNTSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFR---I 57 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--------VIRVV 113 ++ + G+ SF +E +K + ++ L +N + + + Sbjct: 58 ENLMQQGAASF---SVELEFEMMGNTYLVKRKRFQHKTDDKLYVNGKLNAESASEINKKI 114 Query: 114 DELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 +E+ + + + + +R+ + +++ + +E+ Sbjct: 115 EEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLG---------IEKYEKA-S 164 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 + ++ + Y +E ++ + E++ L L E + E L Sbjct: 165 EKMNIVKKSY--EETLLKLEGELTQE--------PEILENLEKLKNEVSESEILKEEILK 214 Query: 228 LTGFLDG---KFDQSFCALKEEYAK--KLFDGRK 256 L+ + + ++E++A+ +L + K Sbjct: 215 KYENLEKLKLEKNSEILQMEEKFAENNQLKENLK 248 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 10/95 (10%) Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 + D + + G GEQ V + + L + ++LDE +A+LDED Sbjct: 890 KDDYSLIVDGLPVETLSG--GEQIAVSLALRLG---ISKAVCNNIECIILDEPTAYLDED 944 Query: 330 KRNALFRI---VTDIGSQIFMTGTDKSVFDSLNET 361 +R L I + I +T + + + Sbjct: 945 RRKNLLNIFKNIKTINQMAIIT--HHQELEQIADN 977 >gi|269102577|ref|ZP_06155274.1| ATP binding protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162475|gb|EEZ40971.1| ATP binding protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 443 Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 52/388 (13%), Positives = 124/388 (31%), Gaps = 45/388 (11%) Query: 5 IKIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASY 61 +KI +N+ F+ +L L D + FVG+NG K+++L A+ L G S Sbjct: 1 MKISKINVKNFKKIRNLDLDIPADNRVICFVGENGANKSSLLSALYANLRQTSGVTSPSD 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 G + V + L + ++ + ++ +++L++ + Sbjct: 61 ------GQDRYVDNLNHVSTSVSADERFSLLSLSLSENDAVIKSDRAIVPSLEDLSEENK 114 Query: 122 ISW------LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + G S R LD + ++ ++ Sbjct: 115 QLLRTTFNIFYSEDIKFLLGQSNFRN--LD--------SYNPDLVRQNVVLFRPFNRTET 164 Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235 ++ S + G I R + ++K N + + L +D Sbjct: 165 PTWERESLSE-NQDVVATGHNIIGKR-----KFPMRVASGIEKTNSYFLDVVLDHLIDSS 218 Query: 236 FDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294 + +L + + L ++ + T + + + + + + S G+ Sbjct: 219 NNSDTTYSLFNNFREILS---TIEPAANGTFVVQEFPNKCISFPNVPELASL-SAGQSDW 274 Query: 295 VLVGI-FLAHARLISN------TTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345 + I L + ++ I+ +DE+ + + + D Q Sbjct: 275 FVTAINILIQMKELARNIAPELIRNVGGIVFIDEMDMNYHPSFQERVLPWFLDFFPNIQF 334 Query: 346 FMTGTDKSVFDSLNETAKFMRISNHQAL 373 +T + SL E + +++ + + L Sbjct: 335 IITTHSPYLIRSLGENSLVVKLPSGEVL 362 >gi|86748191|ref|YP_484687.1| chromosome segregation protein SMC [Rhodopseudomonas palustris HaA2] gi|86571219|gb|ABD05776.1| condensin subunit Smc [Rhodopseudomonas palustris HaA2] Length = 1154 Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K+ L + F+++ + + T VG NG GK+N++EA+ + + D Sbjct: 1 MKLTRLRLHGFKSFVEPTDFMIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRATD 60 Query: 64 VT--------RIGSPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108 + S + ++ + A + +++ R +R + +IN Sbjct: 61 MDAVIFAGSGNRPSRNHAEVVMSIDNTDRTAPAALNDSEVLEISRRIEREAGSQYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 EVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 26/199 (13%) Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 D E+L R R RL + +E Q L + + VE I L + I + KE Sbjct: 933 ADLEKLRRDRERLGAVNLRAEEELNEVETQHGSLAAERDDL-VEAIKKLRTGIQS-LNKE 990 Query: 220 NFPHIKLSLTGFLDGKFDQSFCAL---KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 + S ++G F + F L E K + +++ P + Sbjct: 991 ARERLLASFE-VVNGHFKRLFTTLFGGGEAELKLIESDDPLEAGLEIIAKPPGK------ 1043 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 K +++ S GEQ + + + A T +PI +LDE+ A LD+ Sbjct: 1044 ---KPQSLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCD 1095 Query: 337 IVTDIGSQIFMTGTDKSVF 355 ++ + MT T ++ F Sbjct: 1096 LLNE------MTATTETRF 1108 >gi|329113341|ref|ZP_08242122.1| Hypothetical protein APO_0105 [Acetobacter pomorum DM001] gi|326697166|gb|EGE48826.1| Hypothetical protein APO_0105 [Acetobacter pomorum DM001] Length = 1515 Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 59/334 (17%), Positives = 107/334 (32%), Gaps = 52/334 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++ L I F+++A + + T VG NG GK+N++EA+ ++ S R R Sbjct: 3 VRFVRLRIVGFKSFADPVTVEILPGLTGIVGPNGCGKSNVVEALRWVMGESSARSLRGGE 62 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108 D+ G + S +EG +G +++ R +R S +IN Sbjct: 63 MDDLIFAGTTGRPARSLAEVTVTLEGTKGFGPAAFADMDELQITRRAERGSGSDYRINGR 122 Query: 109 VIRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLDR---MVFAIDPRHRR 157 +R D +L R S +V + + ERR L+ + RH Sbjct: 123 PVRARDVQTLFADLASGARSSAMVSQGRVAMLVGARPEERRTILEEAAGITGLHARRHEA 182 Query: 158 RM------IDFERLMRGRNRL------LTEGYFDSSWCSSIEAQMAELGVK---INIARV 202 + + R R +L L E D+S + A + E + + AR Sbjct: 183 ELKLRATESNLTRAEDRRQQLSDRLDGLAEQSRDASRYRELSAALREAETELLAVLHARA 242 Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGFL----------DGKFDQSFCALKEEYAKKLF 252 + + +K H + + + + + E + L Sbjct: 243 RLAVERAIDNAARARKALTEHEEAAESAVVAEFEANKVLPGAREKADAARTALERCRVLA 302 Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 +G + T L D Sbjct: 303 EGVAREEERAATQANDAAERLKQHEADADAAKTR 336 >gi|269215481|ref|ZP_06159335.1| putative RecF/RecN/SMC N domain protein [Slackia exigua ATCC 700122] gi|269130968|gb|EEZ62043.1| putative RecF/RecN/SMC N domain protein [Slackia exigua ATCC 700122] Length = 1176 Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 85/241 (35%), Gaps = 41/241 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L + F+++A ++L + T VG NG GK+NI +A+ ++ R R + Sbjct: 1 MYLKSLTLKGFKSFADRIQLTLEPGMTAVVGPNGSGKSNISDAVLWVLGERNPKHLRGQA 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADI-------SIKLETRDDRSVRC-LQINDVVIR 111 DV GS + S A VE + +D + L R RS IN +V R Sbjct: 61 MEDVIFAGSTARRSVSVAEVELVLDNSDGMLPVDFDEVSLTRRIFRSGESEYLINGIVAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +D L ++D + +G +RR ++ Sbjct: 121 RMDFMDILHDTGLGTGTHTIIGQGNLDAVLTGKPEDRRALIEEAAG-------------- 166 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 +++ + R +S++ +A + + + L+ E Sbjct: 167 -ILKHKQRKERSARK----LASMDEHLARV-KDVAAEVERQLKPLARKASRQQAYEALST 220 Query: 224 I 224 Sbjct: 221 E 221 >gi|258645381|ref|ZP_05732850.1| DNA repair protein RecN [Dialister invisus DSM 15470] gi|260402730|gb|EEW96277.1| DNA repair protein RecN [Dialister invisus DSM 15470] Length = 554 Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 63/379 (16%), Positives = 126/379 (33%), Gaps = 42/379 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I F + T+F G+ G GK+ +++A++ L GR R D+ R Sbjct: 2 LQSLHIVNFAIIEDTIIELTDGATVFTGETGAGKSILIDALAIL-LGRRART----DLIR 56 Query: 67 IGSPSFFSTFARVEGMEGLADI-----------SIKLETRDDRSVRCL-QINDV--VIRV 112 G+ FF + + I I + + +RS R + IN ++ Sbjct: 57 TGAE-FFKVEGVFSADDEIVSILSSFGFDAADSQIIITRKLNRSGRGICTINGDFCTVKQ 115 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR---MVFAIDPRHRRRMIDFERLMRGR 169 ++ + + L L D I S RR +DR + + + +++ + Sbjct: 116 LEFIGRKL--VRLHEQNDAIELLSSEYCRRIIDRFTPEISTLRDEYDHIYQEWKETKKNL 173 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVK-INIARVEMINALSSLIMEYVQKENFPHIKLSL 228 + +E ++ ++ I E I+ S++ Y + LS Sbjct: 174 EEFHAHRQENERRIDILEWELEQIRTANIINGEDEEIDRRLSILQNYEKIIYSVKAALSA 233 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDG--RKMDSMSRRTLIGPH--RSDLIVDYCDKAITI 284 G D A K +D ++ D R L L + Sbjct: 234 LSDEGGARDLLASASKAVSTASRYDKEMKETDEELRTVLYSLEDIEGKLDTYISAADFSD 293 Query: 285 AHGSTGEQKV-VLVGIF------LAHARLISNTTGFAPILLLDEISAHLDEDKR-----N 332 S + + +L+G+ LA L + I + + ++ Sbjct: 294 EELSELQSRSNILIGLKRKFGPTLADVIHYEENAEKECTSLKNLIYENKEMQEKYKLLTE 353 Query: 333 ALFRIVTDIGSQIFMTGTD 351 A+ + + Q +TG + Sbjct: 354 AVMKKAEALNRQRILTGCE 372 >gi|256962366|ref|ZP_05566537.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293385316|ref|ZP_06631129.1| conserved hypothetical protein [Enterococcus faecalis R712] gi|293386572|ref|ZP_06631155.1| conserved hypothetical protein [Enterococcus faecalis S613] gi|312908106|ref|ZP_07767086.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512] gi|312979001|ref|ZP_07790721.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516] gi|256952862|gb|EEU69494.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291077422|gb|EFE14786.1| conserved hypothetical protein [Enterococcus faecalis R712] gi|291083977|gb|EFE20940.1| conserved hypothetical protein [Enterococcus faecalis S613] gi|310625917|gb|EFQ09200.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512] gi|311288180|gb|EFQ66736.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516] Length = 700 Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 68/413 (16%), Positives = 133/413 (32%), Gaps = 65/413 (15%) Query: 5 IKIKFLNISEFR--NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + I L I FR NY + +++ + + +G N GKT I++A+ L ++ S Sbjct: 1 MFISELEIENFRGFNYKT-KILLNNSINVLIGQNNSGKTTIIKAMELLFSDGSKKKLSVG 59 Query: 63 D---VTRIGSPSF----FSTFARV---EGMEGLADISIKLETRDDR-----SVRCLQIND 107 D I A++ E E +D I + T + R Sbjct: 60 DFYKNITIDDIKALPPKIVISAKLTESEDDEEYSDDLITVSTWLTKIEKPYEARITYEYY 119 Query: 108 VVIRVVDELNKHLRISW--------------LVPSM-DRIFSGLSMERRRFLDRMVFAID 152 + + +DE K + +P I G + + D Sbjct: 120 LPEKYIDEYKKIMNTVNSNEIEDYWNEIEHSFIPKFKYHILIGDPKYKNTIDAESLKTFD 179 Query: 153 PRHRRRMIDFERLM-RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR---VEMINAL 208 + + + D ER M RG N LL E Q + R E Sbjct: 180 FQFLKAVRDVERDMYRGNNSLLKEVIDFFIDYDVKNNQDLTSDEMLTQIRKNKREFSKKA 239 Query: 209 SSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMSRRTLI 266 S LI + ++ ++ L F++ + + +L+ K+ S + Sbjct: 240 SGLINDLQKRMKSGKKEMLKYATQTGATFEKLTPTFEGKILDTELYSALKLIVESETGIK 299 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR------LISNTTGFAPILLLD 320 P + + Y + ++ + + LA + IL ++ Sbjct: 300 IPAAQN-GLGYNN--------------LIYISLLLAKMQKNASGTYFGVNAKNYSILAIE 344 Query: 321 EISAHLDEDKRNALFRIV----TDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369 E AHL + L + + Q+F+T ++ +++ + + + N Sbjct: 345 EPEAHLHPTMQYKLLKFLNLNSEKEVRQVFVTSHSPNITAAVDLNSLIV-VEN 396 >gi|225374437|ref|ZP_03751658.1| hypothetical protein ROSEINA2194_00052 [Roseburia inulinivorans DSM 16841] gi|225213675|gb|EEG96029.1| hypothetical protein ROSEINA2194_00052 [Roseburia inulinivorans DSM 16841] Length = 921 Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ + F T VG NG GK+N+ +A+ L + R AS Sbjct: 1 MYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ ++ + I + T R R IN R Sbjct: 61 MQDVIFAGTENRKPLSYAYVAITMDNSDHQLAIDFEEVTVSRRVYRSGESEYLINGSPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + K ++RI +G ERR D Sbjct: 121 LKDVTELFYDTGIGKEGYSIIGQGQIERILNGKPEERRELFD 162 >gi|320093509|ref|ZP_08025406.1| SMC domain protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319979554|gb|EFW11019.1| SMC domain protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 404 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRAS 60 +K+ ++++ +RN+ + D++ VG N GKTN+L A+ FL RG R A+ Sbjct: 1 MKLTHVSLTNWRNFGHIEFDLDSRL-FVVGPNSSGKTNLLGALRFLGDIARRGLRAAN 57 >gi|311069025|ref|YP_003973948.1| double strand breaks DNA repair and genetic recombination protein [Bacillus atrophaeus 1942] gi|310869542|gb|ADP33017.1| double strand breaks DNA repair and genetic recombination protein [Bacillus atrophaeus 1942] Length = 576 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 32/209 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F L + F+ T+ G+ G GK+ I++AIS L GRG ++ R Sbjct: 2 LAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRG-----SSEFVR 56 Query: 67 IGS-----------PSFFSTF--ARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--- 110 G S F +G++ D+ + + ++N ++ Sbjct: 57 YGETKAELEGLFLLESGHPVFEVCHEQGIDVSDDMIVLRRDINSNGKSVCRVNGKLVTIA 116 Query: 111 ------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 R++ +++ L+ + +F + +R + + Sbjct: 117 ALREIGRLLLDIHGQHDNQLLMEDDKHL-----QLLDKFAGEEADSALHAYREGYQRYMK 171 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 +++ +L + I+ Q+ E+ Sbjct: 172 VLKKLRQLSESEQEMAHRLDLIQFQLDEI 200 >gi|296394247|ref|YP_003659131.1| chromosome segregation protein SMC [Segniliparus rotundus DSM 44985] gi|296181394|gb|ADG98300.1| chromosome segregation protein SMC [Segniliparus rotundus DSM 44985] Length = 1171 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + ++ L + F+++A+ LVF+ T VG NG GK+NI +A+S++ + R A Sbjct: 1 MHLRSLTLKGFKSFAAPTTLVFEPGVTAVVGQNGSGKSNIADALSWVMGEQGAKSLRGAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ ++ +G I R R IN R Sbjct: 61 MDDVIFAGTSKRPALGRAEVTLVIDNTDGALPIDYTEVAITRRMYRDGGGEYLINGDSCR 120 Query: 112 VVD 114 ++D Sbjct: 121 LMD 123 >gi|316935990|ref|YP_004110972.1| chromosome segregation protein SMC [Rhodopseudomonas palustris DX-1] gi|315603704|gb|ADU46239.1| chromosome segregation protein SMC [Rhodopseudomonas palustris DX-1] Length = 1154 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K+ L + F+++ + + T VG NG GK+N++EA+ + + D Sbjct: 1 MKLTRLRLHGFKSFVEPTDFMIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRATD 60 Query: 64 VT--------RIGSPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108 + + + ++ + A ++ + R +R + +IN Sbjct: 61 MDAVIFAGSGNRPARNHAEVVMSIDNSDRTAPAALNDSDTLDISRRIEREAGSQYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 EVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K +++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1042 GKKPQSLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1096 Query: 338 VTDIG 342 + + Sbjct: 1097 LQQMR 1101 >gi|241895654|ref|ZP_04782950.1| SMC structural maintenance of chromosomes partitioning protein [Weissella paramesenteroides ATCC 33313] gi|241871021|gb|EER74772.1| SMC structural maintenance of chromosomes partitioning protein [Weissella paramesenteroides ATCC 33313] Length = 1184 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 29/168 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +K+K L I+ F+++ ++ F T VG NG GK+NI+EAI ++ +G R Sbjct: 1 MKLKTLEITGFKSFAERTKIEFMPGITGVVGPNGSGKSNIIEAIRWVMGEQSAKGLRGDK 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 ADV G+ F +T + I+ L D + QIN V Sbjct: 61 MADVIFGGTSERAPLNRAEVAITFDNTDHYLNSDYSEITITRTLYRNGDSN---YQINGV 117 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRM 147 +R + ++++ S L I S +ERR ++ + Sbjct: 118 HVR-LKDIHELFMDSGLGRESFSIISQGRVESIFSAKPVERRSIIEDV 164 >gi|15606061|ref|NP_213438.1| chromosome assembly protein [Aquifex aeolicus VF5] gi|2983243|gb|AAC06839.1| chromosome assembly protein homolog [Aquifex aeolicus VF5] Length = 1156 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 19/164 (11%) Query: 1 MTNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRG 55 M R I+ + + F++Y + VG NG GK+NI +AISF LS + Sbjct: 1 MEKRAYIEKIVVEGFKSYGTKRKEIPLGEGFIAVVGPNGAGKSNIGDAISFALGLSSAKA 60 Query: 56 FRRASYADVT--RIGSP---SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVV 109 R + + + + G ++ + G + D + + + + R +IN V Sbjct: 61 LRAKNLSYLIFSKNGQKADHAYVEVHFKNLGAFPVEDEEVVISRKVSKDGRSIFKINGQV 120 Query: 110 IRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 +R D + + + + +ERR+ ++ Sbjct: 121 VRERDLKDFLAKAGIYETAYNVVYQGDIVKFLKMTPVERRKIIE 164 >gi|17535279|ref|NP_496331.1| MItosis and X associated family member (mix-1) [Caenorhabditis elegans] gi|8488992|sp|Q09591|MIX1_CAEEL RecName: Full=Mitotic chromosome and X-chromosome-associated protein mix-1; AltName: Full=Lethal protein 29; AltName: Full=Structural maintenance of chromosomes protein 2 gi|2088621|gb|AAC47834.1| mitotic chromosome and X-chromosome associated MIX-1 protein [Caenorhabditis elegans] gi|3878717|emb|CAA87054.1| C. elegans protein M106.1, confirmed by transcript evidence [Caenorhabditis elegans] gi|3878912|emb|CAA86786.1| C. elegans protein M106.1, confirmed by transcript evidence [Caenorhabditis elegans] gi|3880446|emb|CAA20330.1| C. elegans protein M106.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 1244 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Query: 5 IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRA 59 + IK +++ F++Y L F G NG GK+NIL++I F+ R Sbjct: 1 MHIKSIHLDGFKSYQKHTDILDFSPTFNAITGYNGSGKSNILDSICFIMGINKLDNIRAK 60 Query: 60 SYADVTRIGSPSFFS 74 S ++ G Sbjct: 61 SMHELISHGGTKAIV 75 >gi|329117065|ref|ZP_08245782.1| chromosome segregation protein SMC [Streptococcus parauberis NCFD 2020] gi|326907470|gb|EGE54384.1| chromosome segregation protein SMC [Streptococcus parauberis NCFD 2020] Length = 1181 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + ++ + + F+++A ++ FD T VG NG GK+N+ E++ + S + R Sbjct: 1 MFLRRIEMQGFKSFADKTKIEFDKGVTAVVGPNGSGKSNVTESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ G+ S + FA V + +D IK ++ R R + N Sbjct: 61 MPDIIFAGTESRNALNFAEVAVILDNSDQFIKDANKEIRVERHIYRNG 108 >gi|160938005|ref|ZP_02085362.1| hypothetical protein CLOBOL_02898 [Clostridium bolteae ATCC BAA-613] gi|158438999|gb|EDP16754.1| hypothetical protein CLOBOL_02898 [Clostridium bolteae ATCC BAA-613] Length = 1186 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 61/162 (37%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I F+++A+ L F T VG NG GK+N+ +A+ ++ + R AS Sbjct: 1 MYLKSIEIQGFKSFANKLVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGAS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ F ++ + I T R R IN R Sbjct: 61 MQDVIFAGTEMRKPQGFAYVAITLDNSDHQLAIDYDQVTVSRRLYRSGESEYMINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + K +DRI SG ERR D Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFD 162 >gi|150402511|ref|YP_001329805.1| SMC domain-containing protein [Methanococcus maripaludis C7] gi|150033541|gb|ABR65654.1| SMC domain protein [Methanococcus maripaludis C7] Length = 993 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 99/271 (36%), Gaps = 43/271 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASY 61 + IK + + FR++ + + F+ T +G NG GK++I +A++F G FR Sbjct: 1 MIIKTIKMENFRSHRNTSINFNKGITSIIGQNGSGKSSIFQAMNFALFAPRGSNFR---I 57 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--------VIRVV 113 ++ + G+ SF +E +K + +++ L +N + + + Sbjct: 58 ENLMQQGAASF---SVELEFEMMGNTYLVKRKRFQNKTDDKLYVNGKLNAESASEINKKI 114 Query: 114 DELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 +E+ + + + + +R+ + +++ + +E+ Sbjct: 115 EEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLG---------IEKYEKA-A 164 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 + ++ + Y +E ++ + E++ L L E + E L Sbjct: 165 EKMNIVKKSY--EEMLFKLEGELTQE--------PEILENLEKLKNEVSESEVLKEEVLK 214 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 G L+ + L + K + R + Sbjct: 215 KYGNLETVKLEKNLELTQMEEKFTENNRLKE 245 Score = 37.6 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 + D + + G GEQ V + + L + ++LDE +A+LDED Sbjct: 890 KDDYSLIVDGLPVETLSG--GEQIAVSLALRLG---ISKAVCNNIECIILDEPTAYLDED 944 Query: 330 KRNALFRIVTDIGS 343 +R L I +I + Sbjct: 945 RRKNLLNIFKNIKT 958 >gi|307352886|ref|YP_003893937.1| chromosome segregation protein SMC [Methanoplanus petrolearius DSM 11571] gi|307156119|gb|ADN35499.1| chromosome segregation protein SMC [Methanoplanus petrolearius DSM 11571] Length = 1146 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + I L I F+++ ++ F T+ G NG GK+NI+++I F LS RG R Sbjct: 1 MYITELEIDNFKSFAKKTKIPFYEGFTVISGPNGSGKSNIIDSILFCLALSSARGLRAEK 60 Query: 61 YADVTRIGS 69 D+ + S Sbjct: 61 LTDLINLNS 69 >gi|260583708|ref|ZP_05851456.1| cell division protein Smc [Granulicatella elegans ATCC 700633] gi|260158334|gb|EEW93402.1| cell division protein Smc [Granulicatella elegans ATCC 700633] Length = 1186 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 23/192 (11%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 ++++ + +S F+++A + FD T VG NG GK+N+ EAI L + R Sbjct: 1 MQLEKIEMSGFKSFADKTVIEFDKGVTAVVGPNGSGKSNLSEAIKWVLGEQSAKSLRGKK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSVRC-LQINDVVIR 111 DV GS + + +G I + L R +R+ IN R Sbjct: 61 MDDVIFAGSQTRKPVNIAEVNLHINNEDGKLAIEHSQVVLTRRLNRNGDSDFFINKKACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +++IF+ +RR ++ + ++ R + Sbjct: 121 LKDITSLMMDSGLGKDSFALISQGKVEQIFNDKPEDRRMIIEEAAGVLK--YKDRKTQAQ 178 Query: 164 RLMRGRNRLLTE 175 R + L Sbjct: 179 RKLDQTQEHLNR 190 >gi|254464932|ref|ZP_05078343.1| chromosome segregation protein SMC [Rhodobacterales bacterium Y4I] gi|206685840|gb|EDZ46322.1| chromosome segregation protein SMC [Rhodobacterales bacterium Y4I] Length = 1151 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 56/294 (19%), Positives = 110/294 (37%), Gaps = 42/294 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++ L ++ F+++ LV T VG NG GK+N+LEA+ ++ + + R Sbjct: 1 MRFSKLRLNGFKSFVDPTELVIADGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGGG 60 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108 DV G + +F +++ E LA +++ R R V + N Sbjct: 61 MEDVIFAGTTSRPARNFAEVSLQIDNSERLAPSGFNDSDILEIVRRITRDVGSAYKSNGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 +R D L P++ R + + RRR L+ I ++ Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQIAELINAKPKARRRILE-EAAGISGLYQ---R 176 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMIN---ALSSLIMEYV 216 E ++ +N D + Q+A+L + A R I LS ++ Y Sbjct: 177 RHEAELKLKNTEANLLRVDDV-IEQLAGQLAQLAKQARQAQRYREIGEKLRLSEGMLLYR 235 Query: 217 QKENFPHIKLSLTGFLDGKFDQ---------SFCALKEEYAKKLFDGRKMDSMS 261 + +L+ L + +Q + A + + +KL R+ ++++ Sbjct: 236 RWRESDEARLASEDELRARVEQVSKAEVLVRAAAAQRGTFEEKLPPLREEEAIA 289 >gi|332020697|gb|EGI61102.1| Structural maintenance of chromosomes protein 6 [Acromyrmex echinatior] Length = 1222 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 93/300 (31%), Gaps = 47/300 (15%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62 K+K + + F + +L + + VG NG GK+ IL A++ R R S Sbjct: 42 KVKKIRLHNFMCHDALEITLNENVNFIVGQNGSGKSAILTALTVGLGARANVTSRGTSVK 101 Query: 63 DVTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQINDVVIRV--- 112 + + G S V + I++ S + +I Sbjct: 102 EFVKKGRNSAIIEITLVNKGDTAYKPEVYGNIITVLRNIGTTSSYKIKNWRGEIISTKRD 161 Query: 113 -VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRH------ 155 +D + + I P S + + E+ ++ +I+ + Sbjct: 162 ELDNIISMMNIQIDNPISVLNQDVSRTFLVTSKPEEKYSLFMKATLLDSIEINYKEALNI 221 Query: 156 ----RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARV 202 ++ + + + + + ++ AEL I Sbjct: 222 CEEEYDKLQQYNATLSQEKKQIEKLKESIHRLEEMDESRAELSNLEMELHWATAIVE--E 279 Query: 203 EMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 +N + + + + K +I+LS T D D++ +K++ + + + Sbjct: 280 TKLNKIQNTVKMHEDKLKELQNIELS-TEKKDEGIDKNIEEIKQKIQQAEQEAIDSNEAY 338 >gi|301614517|ref|XP_002936738.1| PREDICTED: structural maintenance of chromosomes protein 2-like [Xenopus (Silurana) tropicalis] Length = 1119 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 91/262 (34%), Gaps = 28/262 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + I F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHVKSIIIDGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKATVSITFDNYDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM + + Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E +E ++ K+ R + IM ++ + + Sbjct: 178 KIAAQKTIEKKEAKLKEIQT-ILEEEITPTIHKLKEERSSYLE--YQKIMREIEHLSRLY 234 Query: 224 IKLSLTGFLDGKFDQSFCALKE 245 I + K +S LKE Sbjct: 235 IAYQFVCAEETKV-RSAEELKE 255 >gi|167383572|ref|XP_001736584.1| structural maintenance of chromosomes protein [Entamoeba dispar SAW760] gi|165900946|gb|EDR27157.1| structural maintenance of chromosomes protein, putative [Entamoeba dispar SAW760] Length = 1023 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 4/104 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ + + F + L L Q VG+NG GK+ IL A++ + R +D Sbjct: 9 IERIELENFMCHKHLILELSPQVNFIVGENGSGKSAILVALAICFGAKAQFTNRGKRASD 68 Query: 64 VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 V + G + R G L +R + N Sbjct: 69 VIKTGESYCKIIVYLRNRGENSLNHDKYGDTVIIERKITKEGGN 112 >gi|84489889|ref|YP_448121.1| DNA double-strand break repair protein Rad50 [Methanosphaera stadtmanae DSM 3091] gi|84373208|gb|ABC57478.1| DNA double-strand break repair protein Rad50 [Methanosphaera stadtmanae DSM 3091] Length = 902 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 31/45 (68%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + I + ++ F+++ S ++ F ++ +G+NG GK++ILEAIS+ Sbjct: 1 MIINNIELTNFKSHKSTKIEFKKGISLILGENGAGKSSILEAISY 45 Score = 39.5 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 +LIV + I + S GE+ V+ + + L A+ IS +L+LDE + HLD ++R Sbjct: 799 NLIVQTRQEQIDLNMLSGGEKIVIALALRLGIAKAISK--NKMELLVLDEPTIHLDSERR 856 Query: 332 NALFRIVTDIGS 343 L I+ I Sbjct: 857 TELIDIIRKINV 868 >gi|289616556|emb|CBI56721.1| putative SMC5 protein [Sordaria macrospora] Length = 1140 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 12/127 (9%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RRA 59 I + + +F Y + +G NG GK++++ AI G GF R Sbjct: 71 AIVRVKLKDFVTYNEAEFFLGPSLNMVIGPNGTGKSSLVCAICL---GLGFPSNVLGRAT 127 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELN 117 +Y + + G + ++G G + + L + + R IN + V L Sbjct: 128 AYGEYVKHGQDEA-TIEVELQGESGEDNYVVGLLITRETNSRDFTINGRKATHKEVHRLM 186 Query: 118 KHLRISW 124 LRI Sbjct: 187 SRLRIQI 193 >gi|310780414|ref|YP_003968746.1| SMC domain protein [Ilyobacter polytropus DSM 2926] gi|309749737|gb|ADO84398.1| SMC domain protein [Ilyobacter polytropus DSM 2926] Length = 605 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 53/386 (13%), Positives = 133/386 (34%), Gaps = 52/386 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR------ 58 +K+K + + FR Y + + + + VG N VGK+ I+EA+ + Sbjct: 1 MKLKKIILKNFRGYKDIEIPIEKNFNVIVGKNDVGKSTIMEAMEIFFNSNSIKADLGDYN 60 Query: 59 --ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVD 114 AS +T IG F + ++ ++ E + +I D + Sbjct: 61 VLASEKSMT-IGC-CFEVKSSDKIIIDTTNPTTLDKEFLLNNKGLLEIHKIWDCSKSKLT 118 Query: 115 ELNKHLRISWLVPSMDR--IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 + + + P+ + + + E ++ ++ +I + + + + +N Sbjct: 119 ASSLKIYLKVFYPNSIELPLINLKNSELKKLIENSKSSI--------PNIDTINKTKNAE 170 Query: 173 LTEGYFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L + Y+++ ++ ++ +L + E I+ L + + Sbjct: 171 LRKAYYENCLDKETELDNKLIDLNKEDGKKLWESISQNLPLYFLFQSDRQNKDSDNEVQN 230 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKM---------------DSMSR---RTLIGPHRSD 272 L + + ++E+ + + ++ D +T++ D Sbjct: 231 PLKIETKKVLSEIEEKLNEIKKEVKERVETISNETINYLKEFDKEIASDLKTILNLKAWD 290 Query: 273 LIVDY----CDKAITIAHGSTGEQKVVLVGIFLAHAR-LISNTTGFAPILLLDEISAHLD 327 + ++ ++ GS G ++++L+ F+A A N I +E Sbjct: 291 SLFNFNLIDNNEIPLNKRGS-GVRRLILLSYFMAEAERATKNQNNNDVIYAFEEPENSQH 349 Query: 328 EDKRNALFRIVTDIGS----QIFMTG 349 + + L ++ S QI +T Sbjct: 350 PNYQKMLVESFINLSSTENYQILVTT 375 >gi|308050129|ref|YP_003913695.1| chromosome segregation protein SMC [Ferrimonas balearica DSM 9799] gi|307632319|gb|ADN76621.1| chromosome segregation protein SMC [Ferrimonas balearica DSM 9799] Length = 1152 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 59/359 (16%), Positives = 113/359 (31%), Gaps = 49/359 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ ++ F Q T VG NG GK+N+++A+ ++ S + R + Sbjct: 1 MRLKQIKLAGFKSFVDPTKVPFPDQMTAIVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107 DV GS F + R+EG A+I++K + D +N Sbjct: 61 MTDVIFNGSSGRKPVSVASVELVFDNQAGRLEGQYASYAEIAVKRQVTRDGQSNYF-LNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 R D + + L P I + R L R Sbjct: 120 NKCRRRD-ITDLFMGTGLGPRSYAIIEQGMISR---LIESKPHELRVFIEEAAGISRYKE 175 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYVQKENFPHIKL 226 R + +ELG +I R + + + + + L Sbjct: 176 RRRETENRIRHTRENLERLTDVRSELGSQIERLRRQADAARRYRELKAQERTLHGELLAL 235 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 D + E K ++ + T + R+DL + Sbjct: 236 RWRELSGRMDDLNQVIQALETKKTQYESASAGDSATVTTLEQQRADL-------GAEVER 288 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 +Q++ +G + I L++ H + +R L V Q Sbjct: 289 C---QQRLFALG---------------SQITRLEQQILH-NRQRRQQLEDEVRRNQVQA 328 >gi|168065224|ref|XP_001784554.1| condensin complex component SMC3 [Physcomitrella patens subsp. patens] gi|162663878|gb|EDQ50619.1| condensin complex component SMC3 [Physcomitrella patens subsp. patens] Length = 1192 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 3/106 (2%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61 + IK + I F++Y F +H VG NG GKTN AI LS RA Sbjct: 1 MYIKQVIIEGFKSYKEQVATEPFSPKHNCVVGANGSGKTNFFHAIRFVLSDLFHHLRAED 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 A VE + +D I ++ + R R + + Sbjct: 61 RQALLHEGAGHQVLSAFVEIVFDNSDNRIPVDREEVRLRRTIGVKK 106 Score = 43.4 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 104/281 (37%), Gaps = 22/281 (7%) Query: 78 RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137 ++G+E +++++ E++D + + ++ ++L K +R +PS Sbjct: 881 ELKGLEDKYELTLQDESKDLEQLLNTRN--LLHAKREDLMKKIRDLGSLPSDAFEKYQKK 938 Query: 138 MERRRF-----LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192 + + + +++ + + R L + S + ++ E Sbjct: 939 TLKELHKMLHKCNEQLKNYSHVNKKALDQYVNFTEQREELHKR----QAELDSGDEKIRE 994 Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252 L ++ + E I + ++ ++ + L + ++ A ++ + Sbjct: 995 LISVLDQRKDESIERTFKGVAKFFKEAFSELVPGGLGSLVMMTKRKAAEAGDDDPDE--- 1051 Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312 +G D +RR + + + ++ S G++ VV + + A Sbjct: 1052 EGAPNDEEARREKYVGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFA-----IQRCD 1106 Query: 313 FAPILLLDEISAHLDEDKRNALFRIV---TDIGSQIFMTGT 350 AP L DEI A LD R A+ ++ D G+ F+T T Sbjct: 1107 PAPFYLFDEIDAALDPQYRTAVGNMIKRQADAGATQFITTT 1147 >gi|225851450|ref|YP_002731684.1| chromosome segregation protein SMC [Persephonella marina EX-H1] gi|225645745|gb|ACO03931.1| chromosome segregation protein SMC [Persephonella marina EX-H1] Length = 1162 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 19/158 (12%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASY 61 I +++ F++Y L + VG NG GK+NI ++I F L+ + R Sbjct: 6 IDRIHVYGFKSYGLRKLTIPVGNGFVGIVGPNGSGKSNIGDSIVFALGLATAKSMRALKL 65 Query: 62 ADVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVV-- 113 +D+ R + + EG L D + + + + + + +IN + Sbjct: 66 SDLIFSSRGRSAEYAEVEVVFKNEGAFPLNDEEVSIYRKVEHNGKSTYRINGRPAKQYEV 125 Query: 114 DELNKHLRI------SWLVPSMDRIFSGLSMERRRFLD 145 +EL + I + R ERR L Sbjct: 126 EELLSYAGIPKQGYNIVTQGDIFRFVKMTPSERRDLLS 163 >gi|156839518|ref|XP_001643449.1| hypothetical protein Kpol_483p10 [Vanderwaltozyma polyspora DSM 70294] gi|156114060|gb|EDO15591.1| hypothetical protein Kpol_483p10 [Vanderwaltozyma polyspora DSM 70294] Length = 1118 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 I+ + + F + + + VG+NG GK+ IL AI + R +S + Sbjct: 73 IRKVILRNFMCHENFSVELTPNLNFIVGNNGSGKSAILTAIIVALGVKASETSRGSSLKE 132 Query: 64 VTRIGSPS 71 + R G S Sbjct: 133 LIRKGCNS 140 >gi|254582250|ref|XP_002497110.1| ZYRO0D15642p [Zygosaccharomyces rouxii] gi|238940002|emb|CAR28177.1| ZYRO0D15642p [Zygosaccharomyces rouxii] Length = 1170 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +KI+ L I F++YA+ + +D Q G NG GK+N+L+AI F+ R + Sbjct: 1 MKIEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNVLDAICFVLGIASMSTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S D+ + G + G E +S+ + + + L IN Sbjct: 61 SLQDLIYKRGQAGVTKASVTIVFSNLDPKCSPIGFENSPKLSVTRQIILGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 L + + + + + Sbjct: 120 HRAPQQSVLQLFQSVQLNINNPNFLIMQG 148 >gi|92118696|ref|YP_578425.1| chromosome segregation protein SMC [Nitrobacter hamburgensis X14] gi|91801590|gb|ABE63965.1| condensin subunit Smc [Nitrobacter hamburgensis X14] Length = 1170 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+ L + F+++ V + T VG NG GK+N++EA+ + + + R A Sbjct: 3 MKLTRLRLHGFKSFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSYKSLRAAD 62 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108 V G + + ++ + A ++++ R +R + +IN Sbjct: 63 MEAVIFAGSGNRPARNHAEVVMSIDNSDRTAPSAVNDSETLEISRRIEREAGSVYRINGR 122 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 123 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 168 Score = 39.9 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K T++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1058 GKKPQTLSLLSGGEQALTALALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1112 Query: 338 VTDIGSQIFMTGTDKSVF 355 + + MTG ++ F Sbjct: 1113 LHE------MTGATETRF 1124 >gi|298485964|ref|ZP_07004038.1| Chromosome partition protein smc [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159441|gb|EFI00488.1| Chromosome partition protein smc [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 597 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 5/96 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS---Y 61 +KI+ + I F+ ++ L A T+ G NG GK+++ EAI L+ G R A Y Sbjct: 14 MKIESIYIENFQGLSNANLELTAPITMVCGHNGAGKSSLKEAIG-LALGEAARVAKKGDY 72 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97 + G +G + R D Sbjct: 73 KMLITEGQKKGQIIIGH-DGAASTITLPTGKGERTD 107 >gi|290977298|ref|XP_002671375.1| structural maintenance of chromosome 2 [Naegleria gruberi] gi|284084943|gb|EFC38631.1| structural maintenance of chromosome 2 [Naegleria gruberi] Length = 955 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 29/274 (10%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + I F++YAS + FD G NG GK+NIL+AI F +S R Sbjct: 1 MYIKEVYIDGFKSYASRTVLNGFDKSFNAITGLNGSGKSNILDAICFVLGISNLSQVRAN 60 Query: 60 SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G V G E + I+++ + + IN Sbjct: 61 NLTELIYKQGQAGITKASVSVVFDNSDSANSPVGYEDQSTITVQRQIMIGGKNK-YMING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 ++ N + V + + + + L+ ++ I+ RM + + Sbjct: 120 RNAQLNRVQNLFHSVQLNVNNPHFLIMQGRIT--KVLNMKPIEILGMIEEASGTRMFELK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + ++ + + ++ K+ R + + VQ +N Sbjct: 178 KSSAQK-TIIKKDKKLEEIERILSEEITPKLEKLKSERAKCLQ----HETALVQLKNLER 232 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 + + + ++ K+ R+ Sbjct: 233 YYTAYEYYSHKNQLKKLEKEEKTLKDKIEGVREQ 266 >gi|75676792|ref|YP_319213.1| chromosome segregation protein SMC [Nitrobacter winogradskyi Nb-255] gi|74421662|gb|ABA05861.1| condensin subunit Smc [Nitrobacter winogradskyi Nb-255] Length = 1168 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 61/166 (36%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+ L + F+++ V T VG NG GK+N++EA+ + + + R A Sbjct: 1 MKLTRLRLHGFKSFVEPTDFVIAPGLTGVVGPNGCGKSNLVEALRWAMGETSYKSLRAAD 60 Query: 61 YADVTRIGS-PSFFSTFARVEGMEGLADIS----------IKLETRDDR-SVRCLQINDV 108 V GS A V +D S +++ R +R S +IN Sbjct: 61 MDAVIFAGSGNRPARNHAEVVMSIDNSDHSAPAAFNESEALEISRRIERESGSVYRINGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K T++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1056 GKKPQTLSLLSGGEQALTALALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1110 Query: 338 VTDI 341 + ++ Sbjct: 1111 LHEM 1114 >gi|70929827|ref|XP_736915.1| chromosome associated protein [Plasmodium chabaudi chabaudi] gi|218751460|emb|CAH85458.2| chromosome associated protein, putative [Plasmodium chabaudi chabaudi] Length = 225 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL 50 + IK + + FR Y + + F VG NG GK+NIL AI F+ Sbjct: 1 MHIKQIKLKGFRTYKNETVIEFTKGINCIVGFNGSGKSNILMAIEFI 47 >gi|218678131|ref|ZP_03526028.1| ATP-dependent endonuclease of the OLD family-like protein [Rhizobium etli CIAT 894] Length = 85 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 7/55 (12%) Query: 7 IKFLNISEFRNYASLRLVFD-------AQHTIFVGDNGVGKTNILEAISFLSPGR 54 ++ L+I FR +++ + + T+FVG+NG GKT++LEA+ +L GR Sbjct: 8 VRELSIDNFRCFSAETIKLAVPNGSHGSGLTLFVGNNGTGKTSVLEALDYLFSGR 62 >gi|295397721|ref|ZP_06807793.1| DNA repair protein RecN [Aerococcus viridans ATCC 11563] gi|294974050|gb|EFG49805.1| DNA repair protein RecN [Aerococcus viridans ATCC 11563] Length = 564 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 11/108 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I F L + FD+ T+ G+ G GK+ I++A+ L GRG D R Sbjct: 2 LQHLTIKNFAIIEDLTIDFDSGMTVLTGETGAGKSIIIDAVGLLVGGRG-----STDFIR 56 Query: 67 IGSPSFFSTFARV------EGMEGLADISIKLETRDDRSVRCLQINDV 108 GS F EG LAD I + VR L IN Sbjct: 57 YGSEKFDLRGIFYMPDLSEEGRNMLADNDIPFDDAQLMIVRQLDINGK 104 >gi|226356161|ref|YP_002785901.1| DNA repair protein [Deinococcus deserti VCD115] gi|226318151|gb|ACO46147.1| putative DNA repair protein RecN [Deinococcus deserti VCD115] Length = 534 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 91/271 (33%), Gaps = 42/271 (15%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 + L + SL L F ++F G+ G GK+ I++A+ L R + D+ Sbjct: 4 ALARLEVRNLATIESLDLDFAPGFSVFTGETGAGKSIIVDALGLLLGAR-----ANTDLI 58 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETR---DDRSVRCLQINDVVIRVVDELNKHLRI 122 R G + + ++I+ + D V ++ D R + +H + Sbjct: 59 RTGEDGLLVSGFWQDEDIASRRVTIQGRSTARLDGEVVSLRELQDWAQRRLTIHWQHSAV 118 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSS 181 S L + +R LDR V ++ ++ R R L + Sbjct: 119 SLL----------SAANQRALLDRQVTGEMQAYQAAYRAWQEA-RERLETLRTTERERAR 167 Query: 182 WCSSIEAQMAELGV-----------KINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 + Q E+ + ++ R+ + ++ + E + + TG Sbjct: 168 QLDLLTFQAQEISQVAPQVGEEEPLQADLMRLSNLETIAQGAAGAL--ELLSEAEENATG 225 Query: 231 FL---------DGKFDQSFCALKEEYAKKLF 252 +L ++D++ L+ E L Sbjct: 226 YLAEAVRALNASARYDETSAQLQLELRTALE 256 >gi|258542169|ref|YP_003187602.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO 3283-01] gi|256633247|dbj|BAH99222.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO 3283-01] gi|256636306|dbj|BAI02275.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO 3283-03] gi|256639359|dbj|BAI05321.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO 3283-07] gi|256642415|dbj|BAI08370.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO 3283-22] gi|256645470|dbj|BAI11418.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO 3283-26] gi|256648523|dbj|BAI14464.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO 3283-32] gi|256651576|dbj|BAI17510.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654567|dbj|BAI20494.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO 3283-12] Length = 1515 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 59/334 (17%), Positives = 107/334 (32%), Gaps = 52/334 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++ L I F+++A + + T VG NG GK+N++EA+ ++ S R R Sbjct: 3 VRFVRLRIVGFKSFADPVTVEILPGLTGIVGPNGCGKSNVVEALRWVMGESSARSLRGGE 62 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108 D+ G + S +EG +G +++ R +R S +IN Sbjct: 63 MDDLIFAGTTGRPARSLAEVTVTLEGTKGFGPAAFADMDELQITRRAERGSGSDYRINGR 122 Query: 109 VIRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLDR---MVFAIDPRHRR 157 +R D +L R S +V + + ERR L+ + RH Sbjct: 123 PVRARDVQTLFADLASGARSSAMVSQGRVAMLVGARPEERRTILEEAAGITGLHARRHEA 182 Query: 158 RM------IDFERLMRGRNRL------LTEGYFDSSWCSSIEAQMAELGVK---INIARV 202 + + R R +L L E D+S + A + E + + AR Sbjct: 183 ELKLRATESNLTRAEDRRQQLSDRLDGLAEQSRDASRYRELSAALREAETELLAVLHARA 242 Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGFL----------DGKFDQSFCALKEEYAKKLF 252 + + +K H + + + + + E + L Sbjct: 243 RLAVERAIDNAARARKALTEHEEAAESAVVAEFEANKVLPGAREKADAARTALERCRVLA 302 Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 +G + T L D Sbjct: 303 EGVAREEERAATQANDAAERLKQHEADADAAKTR 336 >gi|221053632|ref|XP_002258190.1| chromosome associated protein [Plasmodium knowlesi strain H] gi|193808023|emb|CAQ38727.1| chromosome associated protein, putative [Plasmodium knowlesi strain H] Length = 1196 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 99/294 (33%), Gaps = 44/294 (14%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL------------- 50 + IK + + FR Y + F VG NG GK+NIL AI F+ Sbjct: 1 MYIKQIKLKGFRTYKNETTIDFTKGINCIVGFNGSGKSNILLAIEFILSDMCEYKQVFLH 60 Query: 51 -SPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109 G R + Y ++ S +FS F + +K++ + + +N+ Sbjct: 61 EGIGNAVR-SCYVEIIFDNSEKYFSMF---------KENEVKIKKVMENMKCEIYVNEKN 110 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 I + V ++ I + + + + + ++ + Sbjct: 111 ISKNQYVELLESCGLCVNNLYNIIKQGQIIKLSNMKDE---------EILNYLKSILGAK 161 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIKL 226 + E D+ S ++ A+ G I EM + +L + +++ + K+ Sbjct: 162 --IFEEKKKDA--LSMLKECDAKKGT-IEKEFQEMNTKLESLQAEFEHFLEYKKLEKEKV 216 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSDLIVDYC 278 L L+ ++ + KL + + D + +L +SD Sbjct: 217 HLEYHLNEINYKNVYKETQTLKSKLQELKNKTQDEDNNLSLTNNTKSDYTEQLN 270 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 16/193 (8%) Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSL 228 N L S+ +I+ + +G K + A +S EY L L Sbjct: 972 NELKKRNEEISTSYKNIKDMIQHIGKKKDEALEATYLKISKYFSEYFSLLFKNRKATLVL 1031 Query: 229 TGFLDGKFDQSFCALKEEYAKK--LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286 + ++ E+ A+K + D +D ++ ++ + D + Y TI Sbjct: 1032 KKMSEQEYKDILRDGNEKRARKKMIDDEAYVDKITGISINITSKEDEKMSY-----TIQE 1086 Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR---NALFRIVTDIGS 343 S GE+ +V + +FL N DEI A LD R + L R + G+ Sbjct: 1087 LSGGERSIVAICLFLCL-----NKIDNFSFFFFDEIDAALDTIHRDNLSLLLRELAQRGT 1141 Query: 344 QIFMTGTDKSVFD 356 Q +T K + + Sbjct: 1142 QFIITTFRKELLE 1154 >gi|156097979|ref|XP_001615022.1| chromosome associated protein [Plasmodium vivax SaI-1] gi|148803896|gb|EDL45295.1| chromosome associated protein, putative [Plasmodium vivax] Length = 1196 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 89/266 (33%), Gaps = 40/266 (15%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL------------- 50 + IK + + FR Y + F VG NG GK+NIL AI F+ Sbjct: 1 MYIKQIKLKGFRTYKNETTIDFTKGINCIVGFNGSGKSNILLAIEFILSDMCEYKQVFLH 60 Query: 51 SPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 R+ Y ++ S +FS F + IK++ + + +N+ I Sbjct: 61 EGIGSAVRSCYVEIIFDNSEKYFSMF---------KENEIKIKKVMENMKCEIYVNEKNI 111 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 + V ++ I + + + + + ++ + Sbjct: 112 SKNQYVELLESCGLCVNNLYNIIKQGQIIKLSNMKDE---------EILNYLKSILGAK- 161 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIKLS 227 + E D+ S ++ A+ G I EM + +L + ++ + K+ Sbjct: 162 -IFEEKKKDA--LSMLKECDAKKGT-IEKEFQEMNAKLESLQAEFEHFLAYKKLEKEKVH 217 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFD 253 L L+ ++ + KL + Sbjct: 218 LEYHLNEINYKNVYKETQTLKSKLQE 243 Score = 40.7 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 72/202 (35%), Gaps = 16/202 (7%) Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 LM N L + +I+ + +G K + A +S EY Sbjct: 963 RLNMLMSDFNELKKRNEEIGTSYKNIKDMIQHIGKKKDEALEATYLKISKYFSEYFSLLF 1022 Query: 221 FPH-IKLSLTGFLDGKFDQSFCALKEEYAKK--LFDGRKMDSMSRRTLIGPHRSDLIVDY 277 L L + ++ + E+ A+K + D +D ++ ++ D + Y Sbjct: 1023 KNRKATLVLKKMSEKEYKDTLREASEKRARKKMIDDEAYVDKITGISINITSNEDEKMSY 1082 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR---NAL 334 TI S GE+ +V + +FL N DEI A LD R + L Sbjct: 1083 -----TIQELSGGERSIVAICLFLCL-----NKIDNFSFFFFDEIDAALDTIHRDNLSLL 1132 Query: 335 FRIVTDIGSQIFMTGTDKSVFD 356 R + G+Q +T K + + Sbjct: 1133 LRELAQRGTQFIITTFRKELLE 1154 >gi|330819124|ref|XP_003291614.1| hypothetical protein DICPUDRAFT_39291 [Dictyostelium purpureum] gi|325078179|gb|EGC31844.1| hypothetical protein DICPUDRAFT_39291 [Dictyostelium purpureum] Length = 307 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 6/117 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63 I+ + + F + + F + G+NG GK+ ++ A+ + F R + D Sbjct: 109 IESITLENFMCHRHFHISFGSNVNFISGENGSGKSAVMIALIIALGAKASFTNRGSKITD 168 Query: 64 VTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 + R + S R G E +R R + ++ D K Sbjct: 169 LIRTDTNHSLIKVVLRNRGPEAYQPEKYGNSIVIER--RINRNGGSGYKIKDHTGKV 223 >gi|154251155|ref|YP_001411979.1| chromosome segregation protein SMC [Parvibaculum lavamentivorans DS-1] gi|154155105|gb|ABS62322.1| chromosome segregation protein SMC [Parvibaculum lavamentivorans DS-1] Length = 1153 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 +K L +S F+++ L+ + T VG NG GK+N+LEA+ ++ F R + Sbjct: 1 MKFNRLRLSGFKSFVDPTDLIIEPGLTGIVGPNGCGKSNLLEAMRWVMGENSFKNMRGSG 60 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108 DV G + + ++ + A + I++ + +R +IN Sbjct: 61 MEDVIFAGTSGRPARNHAEVVLYIDNGDRSAPPAYNDSEVIEVSRKIERDQGSTYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145 +R D L P++ R + S + RRR L+ Sbjct: 121 EVRARDVQLLFADASTGAHSPALVRQGQIAQLISSKPINRRRILE 165 >gi|254416888|ref|ZP_05030636.1| chromosome segregation protein SMC [Microcoleus chthonoplastes PCC 7420] gi|196176252|gb|EDX71268.1| chromosome segregation protein SMC [Microcoleus chthonoplastes PCC 7420] Length = 1274 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + +K L ++ F+++ + ++ T+ G NG GK+NIL+A+ F LS +G R Sbjct: 2 VHVKRLELTNFKSFGGTTQIPMLPGFTVVSGPNGSGKSNILDALLFCLGLSSSKGMRAER 61 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLAD 87 D+ + ARV L+D Sbjct: 62 LPDLVNHNKERRSTVEARVTVTFDLSD 88 >gi|121603905|ref|YP_981234.1| ATP-dependent OLD family endonuclease [Polaromonas naphthalenivorans CJ2] gi|120592874|gb|ABM36313.1| ATP-dependent endonuclease of the OLD family [Polaromonas naphthalenivorans CJ2] Length = 637 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 38/219 (17%) Query: 4 RIKIKFLNISEFRNY----------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 + + + + FR Y +L L F++ + +G+N GK+ I++AI + Sbjct: 55 NMHLSKIKLWNFRKYGDNSTFILEKPNLYLDFNSGLNVLIGENDSGKSAIIDAIRLVMKT 114 Query: 54 RGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 + D RI F R+ LADI + + ++ + + + Sbjct: 115 HSY------DWLRIDDDDFHVGQNRLRIELTLADIKPEEGKNFTEFLSWEILDGITVPSL 168 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR--------HRRRMIDFERL 165 L ++ + L + E R D + P + + + D + Sbjct: 169 R-LILDVKKNLLTNQV------SPYEVRAGADADGRQLSPEAKEYLKVTYLKPLRDAKEE 221 Query: 166 MRGR-NRLL------TEGYFDSSWCSSIEAQMAELGVKI 197 + R N L E + + + Q+A I Sbjct: 222 LVARKNSRLSQILVGHEAFKNRGTDHLLMGQLANFNESI 260 >gi|282897603|ref|ZP_06305603.1| Chromosome segregation protein SMC [Raphidiopsis brookii D9] gi|281197526|gb|EFA72422.1| Chromosome segregation protein SMC [Raphidiopsis brookii D9] Length = 1194 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 54/239 (22%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + ++ F+++ + + T+ G NG GK+NIL+A+ F LS +G R Sbjct: 2 VHIKRVELTNFKSFGGTTSVPLLPGCTVISGPNGSGKSNILDALLFCLGLSSSKGMRADK 61 Query: 61 YADVTRIGS--------PSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------- 102 D+ + + + M L +++ ++ + + + Sbjct: 62 LPDLVNNNQTAKGRNPVEAIVTVTFDISDMVSLPEVTEEVTQVNGQENKSPTLTLWSVTR 121 Query: 103 -------------LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS---------MER 140 IN + EL++ L + P + ER Sbjct: 122 RLRVHSQGTYTSNYYINGSSC-TLTELHEELERLRIYPEGYNVVLQGDVTSIISMNGKER 180 Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199 R +D + + ++R + L E C IE ++ ++ Sbjct: 181 REIIDELAG---------VAAYDRKINQAKGTLEEVKEKEDSCRIIEGELIAQRDRLYQ 230 >gi|209549897|ref|YP_002281814.1| ATP-dependent endonuclease of the OLD family-like protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535653|gb|ACI55588.1| ATP-dependent endonuclease of the OLD family-like protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 496 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%) Query: 7 IKFLNISEFRNYASLRL-------VFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 I+ L+I FR +++ + + T+FVG+NG GKT+ LEA+ +L GR Sbjct: 8 IRELSIDNFRCFSAETINLAVPNGSLGSGLTLFVGNNGTGKTSALEALDYLFGGR 62 >gi|166363290|ref|YP_001655563.1| hypothetical protein MAE_05490 [Microcystis aeruginosa NIES-843] gi|166085663|dbj|BAG00371.1| hypothetical protein MAE_05490 [Microcystis aeruginosa NIES-843] Length = 383 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 72/391 (18%), Positives = 131/391 (33%), Gaps = 65/391 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I FR + + + + + VG N GKT+ILEAI FL Sbjct: 2 LQSLKIEGFRGFQNFEMANLGRINLLVGKNNSGKTSILEAIQFL---------------- 45 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-VVDELNKHLRISWL 125 +I I LET R N + R V E+ + Sbjct: 46 ----------------YAQNNIDIFLETISYRGEFAWLENKLAGRTKVFEICHLFPGHEI 89 Query: 126 VPSMDRIFSGLSMERR-------RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 VPS + I G + + + + ++ D N+LL + Sbjct: 90 VPSQEIIIIGSRESHQESVTISVKSIPIQLSLFSDKNDDLNNDNIFDDEEWNKLLLSIRW 149 Query: 179 DSSWCSSIEAQMAELG--VKINIARVEMINALSSL--IMEYVQKENFPHIKLSLTGFLDG 234 S IE ++ G + +I R+ ++ +S I ++ + L+ + Sbjct: 150 SQSQ-KPIEMELLANGTLARDSIRRIASLSRISHKIGIDNQIELKFLTPFSLTSSDMAAL 208 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH--------RSDLIVDYCDKAITIAH 286 + L++ + L + G + R ++ + I Sbjct: 209 FDNIVLSPLEDLIIESLKIIEPKIERIASVVSGKYLTSNNLGVRGGFLIKIKNHDQPIPI 268 Query: 287 GSTG-EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD----EDKRNALFRIVTDI 341 GS G ++G+ LA L ILL+DEI + L D ++ + Sbjct: 269 GSLGDGFWR-MLGLVLAMVNL------KNGILLVDEIDSGLHFTVMTDMWKVVWETAKKL 321 Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372 Q+F T + + SL E +I++++ Sbjct: 322 NIQVFATTHSRDCWQSLAELITEEKITDNEI 352 >gi|150399403|ref|YP_001323170.1| SMC domain-containing protein [Methanococcus vannielii SB] gi|150012106|gb|ABR54558.1| SMC domain protein [Methanococcus vannielii SB] Length = 1019 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 83/210 (39%), Gaps = 26/210 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62 + IK + I F+++ + +L + T +G NG GK++I +A++F R A++ Sbjct: 1 MIIKSIKIENFKSHRNTKLQLNKGITTIIGHNGSGKSSIFQAMNFALF--SPRGANFKID 58 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--------VVIRVVD 114 ++ + GS SF +E +K + +++ L IN V + ++ Sbjct: 59 NMMQKGSKSF---SIELEFEIRGNSYLVKRKRYQNKTEDKLYINGILNVESSSEVNKKIE 115 Query: 115 ELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVF--AIDPRHRR---RMIDFE 163 E+ + + + + S +R+ + +++ + + + +E Sbjct: 116 EILELDNSIFSNAVYIKQGEIANLIQMTSGDRKEVIGKLLGIERYEKVYEKINIIKKAYE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 + N L + ++ + ++ L Sbjct: 176 ERLFEINGELKQEIEVTNLLEKLNLEILRL 205 Score = 37.2 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 75/224 (33%), Gaps = 32/224 (14%) Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLS 227 RN+L+ + + ++ ++ I E + E V+KEN + Sbjct: 791 RNKLINDIQ-EINYNEERHKELNIYFENILKELHEFSKKFERISSELTVKKENSESLNKK 849 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLF------DGRKMDSMSRRTLIGPHRSDLIV------ 275 + K ++ +EY +K+ DG + + + ++ I Sbjct: 850 IKELALKKEEKQKIESFKEYLEKIRREVFSKDGFQKYLREKYIPLIQRHANQIFQEFELP 909 Query: 276 ----------DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 + + S GEQ V + + L + ++LDE +A+ Sbjct: 910 YSHIQLKEDYSLIVDGLPVETLSGGEQIAVSLALRLG---ISKAVCNNIECIILDEPTAY 966 Query: 326 LDEDKRNALFRI---VTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 LDE++R L I + I +T + + + +R Sbjct: 967 LDEERRKNLLNIFRNIKTISQMAIIT--HHQELEQIADNILTVR 1008 >gi|312977115|ref|ZP_07788864.1| DNA replication and repair protein RecF [Lactobacillus crispatus CTV-05] gi|310896443|gb|EFQ45508.1| DNA replication and repair protein RecF [Lactobacillus crispatus CTV-05] Length = 75 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAK 363 +L+ T P+LLLD++ + LD +++AL + +Q F+T TD + + + Sbjct: 2 QLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISWEIIKKPR 60 Query: 364 FMRISNHQA 372 I + + Sbjct: 61 VYHIQSGKI 69 >gi|224071509|ref|XP_002303494.1| predicted protein [Populus trichocarpa] gi|222840926|gb|EEE78473.1| predicted protein [Populus trichocarpa] Length = 1046 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 79/241 (32%), Gaps = 28/241 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 I + + F + +L++ D G NG GK+ IL A+ R R A+ D Sbjct: 23 ISRIRLENFMCHDNLQIELDQWVNFVTGRNGSGKSAILTALCIAFGCRAKGTQRAATLKD 82 Query: 64 VTRIGSPSFFS-TFARVEGMEG-LADI---SIKLETRDDRSVRCLQINDVVIRV------ 112 + G R G E DI SI +E R ++S + D R Sbjct: 83 FIKTGCSYAVVEVEVRNRGEESFKPDIYGDSIIIERRINQSSSTTVLKDHQGRKVASRRE 142 Query: 113 -VDELNKHLRISWLVPSMDRIFSGLSMERRRFL---DRMVFAIDPRHRRRMIDFERLMRG 168 + EL +H I P + R FL + + L+ Sbjct: 143 DLRELIEHFNIDVENPC----VIMSQDKSREFLHSGNEKDKFKFFFKATLLQQVNDLLLS 198 Query: 169 RNRLLTEGYFDSSWCSS----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 N L + IE ++ EL KI +E + +S + +K + + Sbjct: 199 INEQLKSANALVDELEASIKPIEKELTELQGKI--KNMEHLEEMSQQAQQLKKKLAWSWV 256 Query: 225 K 225 Sbjct: 257 Y 257 >gi|15644384|ref|NP_229436.1| hypothetical protein TM1636 [Thermotoga maritima MSB8] gi|18203590|sp|Q9X1X1|RAD50_THEMA RecName: Full=Probable DNA double-strand break repair rad50 ATPase gi|4982209|gb|AAD36703.1|AE001806_13 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 852 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 12/116 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ + L + F ++ + F + T+ G NG GK+++ EAISF G G R + D Sbjct: 1 MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDY 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + ++G A + + E R +IN + + +L++ L Sbjct: 61 VNRNA------------VDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEIL 104 >gi|322836795|ref|YP_004210709.1| hypothetical protein AciX9_4652 [Acidobacterium sp. MP5ACTX9] gi|321165882|gb|ADW71582.1| hypothetical protein AciX9_4652 [Acidobacterium sp. MP5ACTX9] Length = 617 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I FR + + F + I VG N VGKT +++A+ L G + Sbjct: 9 VYLSQLTIRNFRKLERVDVSFQSGLNILVGPNNVGKTAVIDALRALLGG------HDEPL 62 Query: 65 TRIGSPSFFST 75 R+ S F + Sbjct: 63 PRLSSDDLFRS 73 >gi|269926979|ref|YP_003323602.1| SMC domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269790639|gb|ACZ42780.1| SMC domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 1021 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 26/43 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +KI L+++ ++Y + + F+ G+NG GKT ILEAI Sbjct: 1 MKILKLHLTNIKSYDNTTIEFEPGTNSIHGENGAGKTTILEAI 43 >gi|283852709|ref|ZP_06369974.1| ATPase involved in DNA repair-like protein [Desulfovibrio sp. FW1012B] gi|283571887|gb|EFC19882.1| ATPase involved in DNA repair-like protein [Desulfovibrio sp. FW1012B] Length = 495 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + +F +A + G N GK+ ++EA+ L+ R V R Sbjct: 2 ITRLTLLDFMAHARTVFDLAPGLNVLTGPNNTGKSAVVEALRCLA-----RNPPPKHVIR 56 Query: 67 IGSPSFFSTFARVEG 81 G+ T +G Sbjct: 57 HGATEARVTAETDDG 71 >gi|294649512|ref|ZP_06726933.1| chromosome segregation ATPase [Acinetobacter haemolyticus ATCC 19194] gi|292824573|gb|EFF83355.1| chromosome segregation ATPase [Acinetobacter haemolyticus ATCC 19194] Length = 858 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 46/291 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F A T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60 Query: 61 YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G F +T+ ++ G + + + + R + +N Sbjct: 61 MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P R+F + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMISRLVEAKPEEMRVFIEEAAGVSRYQARRRE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + + + R+ D ++ + R L + ++E+Q+ L ++I + Sbjct: 180 TLQHLEHTEQN-LARLEDIAVELKSQLRTLKRQSEAAIQYKTLESQIRHLKIEILSFQAN 238 Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 + L EY + + L + A + + + Sbjct: 239 QSHKLQ---QEYTVEMTDLGERFKLVRSESNTIEHDLEATSALFQRLIQQS 286 >gi|329850283|ref|ZP_08265128.1| chromosome segregation protein SMC [Asticcacaulis biprosthecum C19] gi|328840598|gb|EGF90169.1| chromosome segregation protein SMC [Asticcacaulis biprosthecum C19] Length = 1156 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 ++ + + +S F+++ D T VG NG GK+N+LEA+ ++ R A Sbjct: 1 MQFQKIKLSGFKSFVDATEFRIDPGLTGIVGPNGCGKSNLLEALRWVMGATSAKAMRGAG 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIK-------LETRDDRSVRCLQINDV 108 DV GS ++ ++ + LA D + +IN Sbjct: 61 MDDVIFAGSDKRPSRNWAEVTLTIDNSDRLAPQPFTDQPVLDVARRIDRGAGSSYRINGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145 +R D L P++ R + + RRR L+ Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIAAKPQNRRRVLE 165 >gi|229163120|ref|ZP_04291076.1| DNA repair protein recN [Bacillus cereus R309803] gi|228620526|gb|EEK77396.1| DNA repair protein recN [Bacillus cereus R309803] Length = 583 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 71/287 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI---------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158 ++ + + +++ L+ +F + R + ++ ++ Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQLG-----IYQNV 170 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIME 214 D+E+L + L S E QMA R+++I + ++ Sbjct: 171 YADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLK 211 Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 ++ +L ++ F++ + AL + Y DG+ +D++ Sbjct: 212 MDEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253 >gi|170289089|ref|YP_001739327.1| SMC domain-containing protein [Thermotoga sp. RQ2] gi|170176592|gb|ACB09644.1| SMC domain protein [Thermotoga sp. RQ2] Length = 852 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 12/116 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ + L + F ++ + F + T+ G NG GK+++ EAISF G G Sbjct: 1 MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNG--------- 51 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R + + +G A + + E R +IN + + +L++ L Sbjct: 52 IRYPNSY---DYVNKNATDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEIL 104 >gi|152976578|ref|YP_001376095.1| DNA repair protein RecN [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025330|gb|ABS23100.1| DNA repair protein RecN [Bacillus cytotoxicus NVH 391-98] Length = 579 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 31/209 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110 G+ A+ E ++ + + + RD +IN ++ Sbjct: 57 YGTEKAEIEGLFYIEDDKHPCIAKAEELDIEIEDGMMILKRDIAANGKSVCRINGKLVTL 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164 ++ E+ K L + + ER F+ +R+V ++ ++ + +E+ Sbjct: 117 SILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGNRIVKQLEK-YQEVYVKYEQ 172 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 L + L + I+ Q E+ Sbjct: 173 LKKQLKALTENEQQMAHRLDLIQFQYEEI 201 >gi|300767242|ref|ZP_07077154.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180456|ref|YP_003924584.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495061|gb|EFK30217.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045947|gb|ADN98490.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum ST-III] Length = 564 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 68/407 (16%), Positives = 133/407 (32%), Gaps = 61/407 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I+ F L + F+A T+ G+ G GK+ I++A+ L+ GRG A+ R Sbjct: 2 LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SAEFIR 56 Query: 67 IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIR-- 111 G+ + E AD ++ L+ +S R +IN +++ Sbjct: 57 TGADKAVLQGMFILPADGVTAQLLDEAGIEHADNTVILQREITKSGRNTCRINGMLVNTT 116 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-------RRRMIDFER 164 + ++ + + + + LD A + R Sbjct: 117 TLKQIGETIVDIHGQNEHQELMQ--PEKHLGLLDEFAAAKIRKLKQRYQQQYDRYQQLNL 174 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 +R +N E + Q+ E+ E ++ Q N + Sbjct: 175 ELRQKNANEKEWAQR---LDMLNFQVDEIAAAQVKVGEEASLTAERDRLDNYQMINQA-L 230 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLIVDYCD 279 + S T G+ + L +D + D + Sbjct: 231 QQSYTLLAAGEETTGAVDMVGTAMNALEPIANLDPAFNEITVNVKNAFYGLQDAAGQISN 290 Query: 280 KAITIAHGSTG-----EQKVVLVGIFLAHARLISNTTGFAPILLLD---EISAHL----- 326 + G EQ++ ++ + G + +LD +I+A L Sbjct: 291 QLDLQEFD-EGRLDEIEQRLDILA-------QLKRKYGDSEQQILDYYQKIAAELAKMTD 342 Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 E+ L + V D+ Q+ TG +++ D AK ++ HQ L Sbjct: 343 SEENSEDLAQRVADLKQQLLTTG--EALSDKRRAAAKVLQRQIHQEL 387 >gi|294654495|ref|XP_456553.2| DEHA2A05324p [Debaryomyces hansenii CBS767] gi|199428929|emb|CAG84508.2| DEHA2A05324p [Debaryomyces hansenii] Length = 1088 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 4/110 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 I+ + + F + S L Q +G NG GK+ IL IS + R +S + Sbjct: 63 IEKIILKNFMCHDSFELNLGPQLNFIIGRNGSGKSAILTGISIGLGVKASDTSRGSSIKN 122 Query: 64 VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 + + G + + R EG+E + +R ++ N IR Sbjct: 123 LIKDGKSTARVTVVFRNEGIEAYKPEEYGSKIIVERKIQRQGSNGYFIRS 172 >gi|302677831|ref|XP_003028598.1| hypothetical protein SCHCODRAFT_83108 [Schizophyllum commune H4-8] gi|300102287|gb|EFI93695.1| hypothetical protein SCHCODRAFT_83108 [Schizophyllum commune H4-8] Length = 1127 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 18/137 (13%) Query: 5 IKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 ++I L + F++Y R+ +D G NG GK+NIL+AI F ++ + R A Sbjct: 1 MRITELVLEGFKSYPVRTRIDGWDPSFNAITGLNGSGKSNILDAICFALGINNMQQMRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + +G+EG+ +I++ + + + L IN Sbjct: 61 TLQDLIYKRGQAGITKASVTIVFDNSEKDKSPQGLEGMREITVTRQITLPIATKYL-ING 119 Query: 108 VVIRVVDELNKHLRISW 124 + L + Sbjct: 120 RKAKQEQVLTLFQSVQL 136 >gi|56808932|ref|ZP_00366640.1| COG1196: Chromosome segregation ATPases [Streptococcus pyogenes M49 591] Length = 1179 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVILDNSDHFIKTANKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|325294865|ref|YP_004281379.1| SMC domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065313|gb|ADY73320.1| SMC domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 905 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 20/221 (9%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +++ L + F ++ L FD + + +G+N GKT+IL I F G+ F + Sbjct: 3 RLRSLKLEGFLSHRLTELEFDDESYVILGENASGKTSILRGIFFALFGKDFSSDKLERIV 62 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI------------RVV 113 + S F L + K +S L+ N I + + Sbjct: 63 NK-QTNKLSVFLSFLHRGNLYTVKRKFSLVRKKSEAELEKNGKPIAIGVKNVNHVIEKEL 121 Query: 114 DELNKHLRISWLVP--SMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGR 169 R + +P + +F E+R+ L+R++ I+ +H + + R+ R Sbjct: 122 GLDPNIFRNTVYIPQGEILTLFEIARKEKRQVLNRLLGLEEINRKHEKVKVFINRIKVLR 181 Query: 170 NRLLTEGYFDSSW---CSSIEAQMAELGVKINIARVEMINA 207 + LL + ++ ++ + I R E+ Sbjct: 182 DALLEKKKSFEELEVEIRKLQKEVEKTKKSIAKLRAELAQE 222 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 12/106 (11%) Query: 270 RSDLIVDYCD---KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 DL V + + + S G+Q + + A AR S +L+LDE + HL Sbjct: 796 SEDLTVTFGIPGRGTMQVEEFSGGQQIAFALSLRFAMARYFSQNF---ELLILDEPTIHL 852 Query: 327 DEDKRNALFRIVTDIGS---QIFMTGTDKSVFDSLNETAKFMRISN 369 D+ +R +L ++ + + Q+ + T + + + + +R+ N Sbjct: 853 DQQRRQSLTDLLIKLKNKIPQMII-VTHDPELEVVGD--RVIRVKN 895 >gi|253572839|ref|ZP_04850238.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251837571|gb|EES65663.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 602 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 68/369 (18%), Positives = 139/369 (37%), Gaps = 43/369 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRG--FRRASY 61 + + L+IS+FR + + L F I +G+N GKT I++A+ L G+ F Sbjct: 10 MYLSRLHISKFRVFDDITLYFKNGINILIGENNSGKTAIIDALRICLGCGKPDNFIYVQD 69 Query: 62 ADV-TRIGSPSFFSTFARVEGMEGLADISIKLET--------RDDRSVRCLQINDVVIRV 112 D+ +PS +T + + + D SI+ E +D+ + +Q++ I+ Sbjct: 70 GDLHVNPENPSEINTVIQFDLIFEFGDASIERECFYDFISQDKDNPDKQTIQLHLKFIQE 129 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 + K+ + RI G E ++ + I + + D Sbjct: 130 NNGKKKYFK---------RIIWGGDNEGQQVPYESLQEIFYTYLSPLRD--------AVS 172 Query: 173 LTEGYFDSSWCSSIEAQMAEL--GVKINIARVEMINALSSLIMEYVQKENFPHIKL--SL 228 Y + S + Q+ + G + E +L+ + + + + + + + Sbjct: 173 CLRPYSYDNKTSQLFNQLTKYDKGNESIPLNEEKKKSLAKNLYQIFENDAYDWKHILTTG 232 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRK-MDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 ++ + + LK + + GR+ D + L P + K T++ Sbjct: 233 KSKVNEHLEGTGITLKHPDIEMRYVGREFSDVVRGIELKCPVYKTVEAGQEQKYFTLSQN 292 Query: 288 STGEQKVVLVGIFLAHARLISN----TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 GE ++ + L LI+ LL++E AHL +N F + ++ S Sbjct: 293 GLGENNLIFTSVVL--GDLINRCEDHALEIYNALLVEEPEAHLHPQYQNTFFEYLNELQS 350 Query: 344 ---QIFMTG 349 Q+F+T Sbjct: 351 KGLQVFVTS 359 >gi|332359506|gb|EGJ37325.1| recombination protein F [Streptococcus sanguinis SK1056] Length = 59 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374 +LLD++ + LD +++ L ++ Q F+T T +L + K I Q + Sbjct: 1 MLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIKIFTIQQGQIMS 57 >gi|291535140|emb|CBL08252.1| condensin subunit Smc [Roseburia intestinalis M50/1] Length = 1186 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 82/219 (37%), Gaps = 26/219 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ + F T VG NG GK+N+ +A+ L + R AS Sbjct: 1 MYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGAS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ G+ S+ ++ + + + T R R +N R Sbjct: 61 MQDIIFAGTENRKPLSYAYVAITLDNADHKLPVDYEEVTVARRVYRSGESEYLLNGNTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +++I +G ERR D + + R+ + Sbjct: 121 LKDVTELFYDTGIGKEGYSIIGQGQIEKILNGKPEERRELFDEAAGIVKYKKRKATAQ-K 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 +L R L+ S +E Q+ L + ARV Sbjct: 180 KLENERENLVRVN----DILSELERQVGPLEKQAEKARV 214 Score = 36.4 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%) Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 + +D+ L+ +R + D + + ++E + L + Y D S Sbjct: 917 ISELDKEVFRLNSQREKLNDAREYQTN----YMWQEYELTLHAAMDLRDDTYDDLSTLKK 972 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + AQ+ + K+ V I + Y + + L G ++ +++ Sbjct: 973 MIAQIKDEIRKLGDVNVNAIEDYKEISERYQFLKTQHDDLIEAEKTLIGIIEELDTGMRK 1032 Query: 246 EYAKKLFDGRK------MDSMSRR--TLIGPHRSDLI---VDYCDKAITIAHG-----ST 289 ++ +K + +K + TL D++ + + S Sbjct: 1033 QFMEKFAEIQKQFDTVFKELFGGGKGTLELVEDEDILECGIRIIAQPPGKKLQNMMQMSG 1092 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 GE+ + + + A +P LLDEI A LD+ + + + +Q + Sbjct: 1093 GEKSLTAIALLFA-----IQNLKPSPFCLLDEIEAALDDSNVTRFAKYLHKLTQNTQFIV 1147 >gi|148270285|ref|YP_001244745.1| SMC domain-containing protein [Thermotoga petrophila RKU-1] gi|281412591|ref|YP_003346670.1| SMC domain protein [Thermotoga naphthophila RKU-10] gi|147735829|gb|ABQ47169.1| SMC domain protein [Thermotoga petrophila RKU-1] gi|281373694|gb|ADA67256.1| SMC domain protein [Thermotoga naphthophila RKU-10] Length = 852 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 12/116 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ + L + F ++ + F + T+ G NG GK+++ EAISF G G Sbjct: 1 MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNG--------- 51 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 R + + +G A + + E R +IN + + +L++ L Sbjct: 52 IRYPNSY---DYVNKNATDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEIL 104 >gi|15922434|ref|NP_378103.1| purine NTPase [Sulfolobus tokodaii str. 7] gi|15623223|dbj|BAB67212.1| 882aa long hypothetical purine NTPase [Sulfolobus tokodaii str. 7] Length = 882 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62 ++ I+ ++I F ++ + F + +G NG GK++I++AISF + R A Sbjct: 3 KMIIRRIDIENFLSHDRSLIEFKGTVNVIIGHNGAGKSSIIDAISFSLFRKSLRDAKKQE 62 Query: 63 DVTRIGSPSFFST 75 D+ + G+ T Sbjct: 63 DLIKRGAGRATVT 75 Score = 40.7 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 109/284 (38%), Gaps = 39/284 (13%) Query: 78 RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137 ++G E L + + + + ++ N+ I+ L L++ P+ + Sbjct: 612 EIKGKENKLRELDTLLAKIETAKQKIKQNEEEIKK---LTDELQLLNFDPNRFQQIKRE- 667 Query: 138 MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197 + L++++ I+ + + + ++ + L E D + ++ K+ Sbjct: 668 ---KEVLEKILGEINSKKGELLGK-KEVLENDIKRLEEQIKDYEEKLKNKQKLITAYDKL 723 Query: 198 NIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 R + L + +M V+ ++ SL L +F+ SF ++ ++ K Sbjct: 724 KKLREHLAEDKLQAYLMNTVKSL----VEDSLNSILS-RFELSFTRVEVDFNDK------ 772 Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316 + + T G + + S GE+ + + + LA A+ + N G Sbjct: 773 -NGIYAYTTSGQ------------RLPVNLLSGGERVSIALALRLAIAKSLMNEVG---F 816 Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357 L+LDE + +LDE ++ L I+ QI + D+ + + Sbjct: 817 LILDEPTVNLDEYRKKELIDIIRSTVEVVPQIIVVTHDEELLQA 860 >gi|288553093|ref|YP_003425028.1| chromosome segregation SMC protein [Bacillus pseudofirmus OF4] gi|288544253|gb|ADC48136.1| chromosome segregation SMC protein [Bacillus pseudofirmus OF4] Length = 1188 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 97/287 (33%), Gaps = 26/287 (9%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++ + + F T VG NG GK+NI +A+ ++ + R + Sbjct: 1 MFLKRLEVVGFKSFAEQMNIEFVPGVTAVVGPNGSGKSNISDAVRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 D+ GS + +A V + D + ++ + R + IN R Sbjct: 61 MEDIIFAGSDTRKRLNYAEVSLILDNEDQHLSIDYSEVSVTRRVYRSGDSEYLINKQPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ I S + +RR + + + R+ + Sbjct: 121 LKDIIDLFLDSGLGREAYSIIGQGKVEEILSSKAEDRRVIFEEAAGVLKYKTRKVKAEKR 180 Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMA---ELGVKINIARVEMINALSSLIMEYVQK 218 N L E + +E Q + + K + I + I E Q+ Sbjct: 181 LTETQDNLLRVEDILHELKAQVEPLEIQASIAKDYLEKKEELKEVEIALMVHEIEELHQE 240 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 N KL K Q ++EE + +D T Sbjct: 241 WNSEKEKLQSLHQEHDKRHQKLIEMEEELESLRERSKHLDRELSVTQ 287 >gi|171684911|ref|XP_001907397.1| hypothetical protein [Podospora anserina S mat+] gi|170942416|emb|CAP68068.1| unnamed protein product [Podospora anserina S mat+] Length = 1089 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 12/135 (8%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61 I + + F Y+ + + +G NG GK++++ AI L G R +++ Sbjct: 50 AIVRVKLRNFVTYSEAQFSLGPNLNMVIGPNGTGKSSLVCAIC-LGLGYPPNVLGRASTF 108 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKH 119 D + G+ E + I L R + + R IN + D +L + Sbjct: 109 GDFVKHGNDEAELEVELQRKPEDAENYVIGLVIRREDNSRKFTINGSRSTLKDVQKLMRS 168 Query: 120 LRISW-----LVPSM 129 LRI +P Sbjct: 169 LRIQIDNLCQFLPQD 183 >gi|167389827|ref|XP_001739101.1| structural maintenance of chromosomes protein [Entamoeba dispar SAW760] gi|165897350|gb|EDR24540.1| structural maintenance of chromosomes protein, putative [Entamoeba dispar SAW760] Length = 1023 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 13/131 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63 I+ +++ F + L+L +Q VG+NG GK+ IL A++ + F R +D Sbjct: 9 IERIDLENFMCHRHLQLDLCSQVNFIVGENGSGKSAILVALAICFGAKATFTNRGKRVSD 68 Query: 64 VTRIGSPSFFSTFARVEGMEGLAD---------ISIKLETRDDRSVRCLQIN-DVVIRVV 113 + + G + EG D I K+ S + +N R++ Sbjct: 69 IVKNGETHCKVSVYLRNRGEGAMDKEKYGDTIIIERKISKEGGSSYKIYSMNSGEKPRII 128 Query: 114 DELNKHLRISW 124 + + Sbjct: 129 GHKSSDVNEIL 139 >gi|325290419|ref|YP_004266600.1| chromosome segregation protein SMC [Syntrophobotulus glycolicus DSM 8271] gi|324965820|gb|ADY56599.1| chromosome segregation protein SMC [Syntrophobotulus glycolicus DSM 8271] Length = 1198 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 112/296 (37%), Gaps = 40/296 (13%) Query: 7 IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62 +K L+I F+++A L+L F A + VG NG GK+N+ +A+ L + R + Sbjct: 11 LKALHIQGFKSFADKLKLEFGAGMCVIVGPNGSGKSNVADAVRWVLGEQSVKSLRGSKME 70 Query: 63 DVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQINDVVI----RVVDELN 117 DV GS + A V + + ++ L+ ++ R + + R + L Sbjct: 71 DVIFSGSSARRPVGMAEVSLVFDNSAGTLPLDFQEVTITRRVYRDGESQYYINRSLCRLR 130 Query: 118 KHLRISWLVPS------------MDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMI 160 + S +D I + S ERR ++ + +++ Sbjct: 131 DIQELFLDTGSGKEGFSIIGQGRIDEILNLKSDERRLLIEEVAGISKYRMRKKEALKKLE 190 Query: 161 DFERLMRGRNRL----------LTEGYFDSSWCSSIEAQMAELGVKINIARVEM----IN 206 D ++ + N + L E + + ++A+ + + + +E + Sbjct: 191 DTQKNLERLNDIIVEIEGRLEPLKEQAETARLSKELNQELAQTEISVLVCELEQVKNRLQ 250 Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 + E +K+ K++ + + LK+ ++ + R++++ ++ Sbjct: 251 EILDGAEEMQEKKALVLAKIAEHESIHLVKEHDLEKLKQTIQQRQEEIRELENAAQ 306 >gi|262190206|ref|ZP_06048482.1| SMC domain protein [Vibrio cholerae CT 5369-93] gi|262033903|gb|EEY52367.1| SMC domain protein [Vibrio cholerae CT 5369-93] Length = 396 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 IK L I F++ + + +F+G NG GK+N+LE+I+ LS Sbjct: 3 HIKRLTIKGFKSIYDQDIDLG-RLNVFIGTNGAGKSNLLESIAMLS 47 >gi|20090030|ref|NP_616105.1| chromosome segregation protein [Methanosarcina acetivorans C2A] gi|49036451|sp|Q8TRL1|RAD50_METAC RecName: Full=DNA double-strand break repair rad50 ATPase gi|19914999|gb|AAM04585.1| purine NTPase [Methanosarcina acetivorans C2A] Length = 1074 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 +K+K L I R+Y L F+ T+ G NG GK+++LEA G Sbjct: 1 MKLKNLYIENIRSYRKLDFTFEDGVTVISGVNGSGKSSLLEACFMGLFG 49 >gi|159186464|ref|NP_395960.2| hypothetical protein Atu5023 [Agrobacterium tumefaciens str. C58] gi|159141524|gb|AAK90401.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 577 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 52/391 (13%), Positives = 120/391 (30%), Gaps = 77/391 (19%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L I FR ++ + F + + VG N +GK+ +++A+ R + Sbjct: 1 MHLASLKIKNFRRFSETTIKFKSGLNVIVGPNNIGKSAVVDAL------RSLLAGADDPY 54 Query: 65 TRI----------GSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 R G S F + + ++G + R+ + + +V Sbjct: 55 PRFTVDDIHVPKLGEASGDIVFEFIFDDLDGNDEADFIHALREKPDNKLEAVLNVAFGDA 114 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR-GRNRL 172 D+ + W + E M+ + + + D E+ +R RN Sbjct: 115 DKSGRLRPRRWC----------GAFEEVSMSSSMLDNLRSVYLPPLRDAEQGLRPSRNSQ 164 Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALS--SLIMEYVQKENFPHIKLSLT 229 L+ + + + V +++ ++ + L V + + L Sbjct: 165 LSR------LLHLLTDETGKEEVALHLKDLDAKLKELQVLKDAQSAVSGRHETMLGERLA 218 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSM-SRRTLIGPHRSDLIVDYCDKAITIAHGS 288 L+ S + L D +++ + +++ K + S Sbjct: 219 QVLNVGLTGSDFSKLAARLSLLVDTFEIERNGLGYNNLIFMA--VVLSELSKNAEASFRS 276 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG------ 342 L+++E AHL + L + ++ I Sbjct: 277 ----------------------------LIVEEPEAHLHPQLQAVLLKYLSSIQNGVGER 308 Query: 343 -SQIFMT--GTDKSVFDSLNETAKFMRISNH 370 Q+F+T + + LN A + ++ Sbjct: 309 DVQVFVTSHSPNFASIADLNSIACLYEVDDN 339 >gi|116492590|ref|YP_804325.1| DNA repair ATPase [Pediococcus pentosaceus ATCC 25745] gi|116102740|gb|ABJ67883.1| DNA replication and repair protein RecN [Pediococcus pentosaceus ATCC 25745] Length = 558 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 98/283 (34%), Gaps = 46/283 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I +F L + F+ T+ G+ G GK+ I++A+ L+ GRG AD R Sbjct: 2 LLELSIKDFAIIEKLDVSFNQGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SADFVR 56 Query: 67 IGSP----SFFSTFARVE---------GMEGLADISIKLETRDDRSVRCLQINDVVI--R 111 G+ A ++ G++ D+ I E +IN ++ Sbjct: 57 TGADKAVLQGVFDIAEIDNTKNALIKLGIDATNDLVITRELHKGGRS-VCRINGTIVNLN 115 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + + + L + + F ++MV + ++ D+ +L + Sbjct: 116 SLKSVGETLIDIHGQNEHQELMNSEKHLALLDHFDEKMVGKVRAKYEEAYADYSKLNQQL 175 Query: 170 NRLLTEGYFDSSWCSSIEAQ---------MAELGVKINIARVEMIN------ALSSLIME 214 N+ + + ++ Q MA ++ R ++ N ALS+ Sbjct: 176 NKSRKNEHEWNQRVDMLQFQVEEIKSANLMAGEDEELEKRRDQLNNFQSISDALSTSFQL 235 Query: 215 YVQKENFPHI--------KLSLTGFLDGKFDQSFCALKEEYAK 249 ++ I +L D ++ Q ++ Y Sbjct: 236 LEGEDGASAIDQIGSVMQELQSISDYDDEYQQVSDEVQSAYYA 278 >gi|332295829|ref|YP_004437752.1| SMC domain protein [Thermodesulfobium narugense DSM 14796] gi|332178932|gb|AEE14621.1| SMC domain protein [Thermodesulfobium narugense DSM 14796] Length = 1059 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 24/274 (8%) Query: 5 IKIKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASY 61 + ++ L I F++ Y FD + + +G NG GK+NI E+I + GR R S Sbjct: 1 MYLQNLRIFGFKSFYKEFIFEFDKKLNVIIGPNGSGKSNIGESIKWALGGRISSIRADSS 60 Query: 62 ADVTRIGSPSF-------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 ++ G +F E E +++IK N V + Sbjct: 61 IELLFSGYKNFKPVNYCEVEINFSDELKENNTELNIKRYMSRGGINNYYVNNVEVQKK-- 118 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 ++ LR L ++ I +++ + L+ + + + + L + Sbjct: 119 QMTDILRPLGLGSTLFLIIDQGTVD--KILNLNSDQLCQIFLESLG-YGNYKAEKAELES 175 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + + ++ + ++ + ++ + + +E K + +L + + Sbjct: 176 KILEKEEQIETFNLELKKNKSRLEVLYKDL--KIYDIYVEISNKIDLLKKELVFREYNEL 233 Query: 235 K-----FDQSFCALKEEYAKKLFDGRKMDSMSRR 263 K ++ +++E++K L K + ++ Sbjct: 234 KNEKLNTEKEQIDIEKEHSKLL--NYKKEIENKY 265 >gi|282901659|ref|ZP_06309575.1| DNA repair protein RecN [Cylindrospermopsis raciborskii CS-505] gi|281193422|gb|EFA68403.1| DNA repair protein RecN [Cylindrospermopsis raciborskii CS-505] Length = 575 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 24/206 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L I F L L F + G+ G GK+ IL+AI + GR + V R Sbjct: 2 LLSLRIENFALIDQLELDFGPGLNVLTGETGAGKSIILDAIDAVLGGR-----VSSRVIR 56 Query: 67 IGSPSFFSTFAR----------VEGMEGLAD-----ISIKLETRDDRSVRCLQINDVVIR 111 G+ E L D IS ++ ++N V++ Sbjct: 57 TGTNRAVVEGTFSIAPFLATWLTEQEIDLIDDNSLVISREITASGINIRSRSRVNGVLVN 116 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERLMR 167 + R+ + + G S + R +LD + + ++ + Sbjct: 117 RQIMTSLRDRLVEITAQGQTLQVGQSAQVRDWLDLYGGEDIIQHKQKVSSAYAAYQEAHK 176 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193 + + Q+ EL Sbjct: 177 NLEKRRRSEKERLQQLDLLTYQIQEL 202 >gi|260946677|ref|XP_002617636.1| hypothetical protein CLUG_03080 [Clavispora lusitaniae ATCC 42720] gi|238849490|gb|EEQ38954.1| hypothetical protein CLUG_03080 [Clavispora lusitaniae ATCC 42720] Length = 1170 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ +V +D Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVVTGWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E A IS+ + + + L +N Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFDNSDKAKSPIGFENSAKISVTRQIILGGTSKYL-VNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + LN + + + + + Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148 >gi|212639594|ref|YP_002316114.1| chromosome segregation ATPase [Anoxybacillus flavithermus WK1] gi|212561074|gb|ACJ34129.1| Chromosome segregation ATPase [Anoxybacillus flavithermus WK1] Length = 1186 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 83/292 (28%), Gaps = 49/292 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L F+++A + + F T VG NG GK+NI +AI ++ + R A Sbjct: 1 MFLKRLEAIGFKSFADRISIDFVPGMTAIVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS S ++ + + + + R R IN+ R Sbjct: 61 MEDVIFSGSESRKPLNVAEVTLTLDNSDQFLPLEYEEVSITRRVYRSGDSEFFINNQPCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVF------------- 149 + ++ S + I S + +RR + Sbjct: 121 -LKDIVDLFMDSGVGREAFSIISQGKVEEILSSKAEDRRTIFEDAAGVLKYKTRKKKAEQ 179 Query: 150 ---------AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINI 199 + ++ + + E + E + +++ Sbjct: 180 KLNETEDHLQRVQDILHELNQQLEPLKQQASIAKEYLEKKEQLQTYEVGLIVYEIEQLHE 239 Query: 200 ARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248 + L ME ++ D+S L++ Sbjct: 240 KWEALKKQLALHQQNEMELATTLQKEEAHIAQLRHELTALDESIDGLQQVLL 291 >gi|146318844|ref|YP_001198556.1| chromosome segregation ATPase [Streptococcus suis 05ZYH33] gi|146321054|ref|YP_001200765.1| chromosome segregation ATPase [Streptococcus suis 98HAH33] gi|253751929|ref|YP_003025070.1| chromosome partition protein [Streptococcus suis SC84] gi|253753752|ref|YP_003026893.1| chromosome partition protein [Streptococcus suis P1/7] gi|145689650|gb|ABP90156.1| Chromosome segregation ATPase [Streptococcus suis 05ZYH33] gi|145691860|gb|ABP92365.1| Chromosome segregation ATPase [Streptococcus suis 98HAH33] gi|251816218|emb|CAZ51845.1| putative chromosome partition protein [Streptococcus suis SC84] gi|251819998|emb|CAR46158.1| putative chromosome partition protein [Streptococcus suis P1/7] gi|292558505|gb|ADE31506.1| SMC protein [Streptococcus suis GZ1] gi|319758291|gb|ADV70233.1| chromosome segregation ATPase [Streptococcus suis JS14] Length = 1177 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 110/290 (37%), Gaps = 36/290 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLA---DISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ G IK+E RS I+ +R Sbjct: 61 MPDVIFSGTESRKALNYASVVVTLDNSTGFIANKQKEIKVERHIYRSGDSEYLIDGQKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFEEAAGVLK--YKTRKKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-----MINALSSLI 212 + L Y + +E AQ A+ ++++ R E ++ LS Sbjct: 179 SKLAQAQDNLDRLDDIIYELDNQVKPLEKQAQTAKKFLELDGQRKELYLNVLVAQLSLGK 238 Query: 213 MEYVQKE-NFPHIKLSLTGFLDGKFDQSFCAL-KEEYAKKLFDGRKMDSM 260 + +KE +K LT + + + L +E +L + + + Sbjct: 239 EKLSEKEAELESVKTELTSYYKQRSELEQENLNLKEKRHRLSEQLEREQA 288 >gi|309800536|ref|ZP_07694687.1| chromosome partition protein smc [Streptococcus infantis SK1302] gi|308115847|gb|EFO53372.1| chromosome partition protein smc [Streptococcus infantis SK1302] Length = 85 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSPS 71 DV G+ S Sbjct: 61 MPDVIFAGTES 71 >gi|324501246|gb|ADY40556.1| Structural maintenance of chromosomes protein 3 [Ascaris suum] Length = 1203 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 5 IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYA 62 + IK ++I+ FR+Y + F +H + VG NG GK+N AI LS R+ + Sbjct: 1 MYIKEVSITGFRSYLETTVDDFSPRHNVVVGRNGSGKSNFFLAIQFVLSDEFSHLRSDHR 60 Query: 63 D-VTRIGSPSFFSTFARVEGMEGLADISI 90 + G+ ST ARVE + D I Sbjct: 61 QGLIHEGTGEKVST-ARVEIVFDNVDRRI 88 Score = 42.2 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345 S G++ +V + + A AP L DEI A LD R A+ ++ ++ +Q Sbjct: 1102 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDAALDAQHRKAVADMIHELSENAQ- 1155 Query: 346 FMTGTDKSVFDSLNETAKFMRI 367 F+T T ++ L K+ + Sbjct: 1156 FITTTFRAEL--LGTAEKYFGV 1175 >gi|307244211|ref|ZP_07526326.1| chromosome segregation protein SMC [Peptostreptococcus stomatis DSM 17678] gi|306492361|gb|EFM64399.1| chromosome segregation protein SMC [Peptostreptococcus stomatis DSM 17678] Length = 1183 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 29/264 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++ + + FD T VG NG GK+NI +AI L + R Sbjct: 1 MYLKKLELKGFKSFPTKTDIYFDKGVTAVVGPNGSGKSNISDAIRWVLGEQSVKSLRGEK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111 DV +G+ S + ++ + DI + IN+ R Sbjct: 61 MEDVIFLGTDSKNQMNYCEVAITLDNSQAEIDIDSDELVIKRRVYRNGESEFYINNKTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K ++ I S RR+ D R+++ + E Sbjct: 121 LKDVRETLLDTGIGKDGYSIIEQGKVEEILSNNPANRRKIFDEACGISKFRYKK--NEAE 178 Query: 164 RLMRGRNRLLTEG----YFDSSWCSSIEAQMAELGVKINIARVEMIN-ALSSLIMEYVQK 218 R ++ + L Y + +E Q A+ K E+ L+ I + Q Sbjct: 179 RNLKKSSDNLARIEDIFYEIENQVKPLERQ-AKKAEKYLEVSQELKKLELNDFIKQTSQM 237 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCA 242 ++ L+ + D + Sbjct: 238 DDLIRDMSDKLAGLEKELDLTESE 261 >gi|289449493|ref|YP_003474967.1| chromosome segregation protein SMC [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184040|gb|ADC90465.1| chromosome segregation protein SMC [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1197 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K + + F+++ + F T VG NG GK+N+ +AI ++ + R Sbjct: 1 MHLKSIELQGFKSFPERTVIEFHTGMTAIVGPNGSGKSNVTDAIRWVLGEQSVKTLRGNK 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ G+ S ++A V+ D SI L + R L +IN + R Sbjct: 61 MEDIIFAGTQSRRPLSYAEVQINFDNTDSSIDLPYNEVSVTRRLYRSGESEYRINKNLCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D + + +D + S S +RRR + Sbjct: 121 LRDVIELFMDTGIGRDGYSIIGQGRVDELLSNRSEDRRRVFE 162 >gi|253755370|ref|YP_003028510.1| chromosome partition protein [Streptococcus suis BM407] gi|251817834|emb|CAZ55587.1| putative chromosome partition protein [Streptococcus suis BM407] Length = 1177 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 110/290 (37%), Gaps = 36/290 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLA---DISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ G IK+E RS I+ +R Sbjct: 61 MPDVIFSGTESRKALNYASVVVTLDNSTGFIANKQKEIKVERHIYRSGDSEYLIDGQKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFEEAAGVLK--YKTRKKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-----MINALSSLI 212 + L Y + +E AQ A+ ++++ R E ++ LS Sbjct: 179 SKLAQAQDNLDRLDDIIYELDNQVKPLEKQAQTAKKFLELDGQRKELYLNVLVAQLSLGK 238 Query: 213 MEYVQKE-NFPHIKLSLTGFLDGKFDQSFCAL-KEEYAKKLFDGRKMDSM 260 + +KE +K LT + + + L +E +L + + + Sbjct: 239 EKLSEKEAELESVKTELTSYYKQRSELEQENLNLKEKRHRLSEQLEREQA 288 >gi|171914180|ref|ZP_02929650.1| Chromosome segregation protein SMC [Verrucomicrobium spinosum DSM 4136] Length = 1328 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L I F+++A L F T VG NG GK+N+++AI ++ + + R A Sbjct: 1 MYLKSLEIHGFKSFADKTLFEFHTGVTGIVGPNGCGKSNVVDAIRWVLGETSAKALRGAE 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 ADV G+ T A E G+ + + R R R +IN + R Sbjct: 61 MADVIFNGTDKRKPVGMAEVILTLADCEQGLGVDYNEVAMCRRVFRDGRSEYRINGTICR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + + +D + S +RR + Sbjct: 121 LKDFQELLAGTGIGRSAYSVMEQGKIDMLISAKPEDRRSVFE 162 >gi|147919561|ref|YP_686699.1| chromosome segregation/partition protein [uncultured methanogenic archaeon RC-I] gi|110622095|emb|CAJ37373.1| chromosome segregation/partition protein [uncultured methanogenic archaeon RC-I] Length = 1173 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 90/253 (35%), Gaps = 22/253 (8%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + +S F+++A +++ F T G NG GK+NI+++I F LS R R Sbjct: 1 MHIKEIELSNFKSFARKVKVPFYDDFTTISGPNGSGKSNIIDSILFCLGLSNSRTMRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 D+ A V D + ++ + R ++ +D N Sbjct: 61 LTDLI-YSVDGKSPGTAEVTIRFDNVDRELPIDLDEITVTRRIKSSDSGYYSYYYFNDK- 118 Query: 121 RISWLVPSMDRIFSGLSMERRRFLD--RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 PS + R D +V D M D R +++ E Sbjct: 119 ------PSSLNEIHEQLAKARISQDGYNVVLQGDVTRIISMSD-----TERRKIIDEIAG 167 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGKFD 237 + + + ++EL ++ R+E +N + + + + + + L + D K Sbjct: 168 TAEFDDKTDKALSEL--EVVRERIERVNIIIAEVEARLSQLKRERDQALLYQSYRDEKIK 225 Query: 238 QSFCALKEEYAKK 250 L E + Sbjct: 226 NEGYLLLSELKEA 238 >gi|50286419|ref|XP_445638.1| hypothetical protein [Candida glabrata CBS 138] gi|49524943|emb|CAG58549.1| unnamed protein product [Candida glabrata] Length = 1170 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNILDAICFVLGISSMATVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G IS+ + + + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFDNTDKSNTPIGFSEYPKISVTRQIVLGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 L + + + + + Sbjct: 120 HRAPQQSVLQLFQSVQLNINNPNFLIMQG 148 >gi|209559003|ref|YP_002285475.1| Putative chromosome segregation SMC [Streptococcus pyogenes NZ131] gi|209540204|gb|ACI60780.1| Putative chromosome segregation SMC [Streptococcus pyogenes NZ131] Length = 1179 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVILDNSDHFIKTANKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|330879783|gb|EGH13932.1| chromosome segregation protein SMC [Pseudomonas syringae pv. glycinea str. race 4] Length = 390 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 DV GS S S + +G A+ISI+ + D +N Sbjct: 61 MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158 R D + + L P I + R F++ Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEEAAG--------- 169 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + ++ R + + + + + + ++ +++ E K Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 ++ L G+ + + + + D R D+ R G H DL + Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEIGFEALVADQRSADASIERLRDGHH--DLSERFN 287 Query: 279 ---------DKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314 >gi|114570749|ref|YP_757429.1| condensin subunit Smc [Maricaulis maris MCS10] gi|114341211|gb|ABI66491.1| condensin subunit Smc [Maricaulis maris MCS10] Length = 1148 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K L ++ F+++ L D T +G NG GK+N+LEA+ ++ + + R Sbjct: 1 MKFTQLRLAGFKSFVEPTELRIDPGLTGVIGPNGCGKSNLLEALRWVMGATSAKSLRGDG 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI------SIKLETRDDRS-VRCLQINDV 108 DV G+ + F V+ + LA ++ + R R +IN Sbjct: 61 MEDVIFAGTDARPSRNFAEVVLSVDNADKLAPARFNDADTLDVTRRITRGAGSAYKINGE 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145 +R D L P++ R + + RRR L+ Sbjct: 121 EVRAKDVQLLFMDAGTGANSPALVRQGQISELIASKPQNRRRVLE 165 >gi|293381176|ref|ZP_06627184.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus crispatus 214-1] gi|290922216|gb|EFD99210.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus crispatus 214-1] Length = 847 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + FD T VG NG GK+NI EA+ ++ S + R + Sbjct: 1 MPLTELVLDGFKSFADKTTIHFDDGITGIVGPNGSGKSNITEAVRWVMGESSAKSLRGTN 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV GS F + + + R RS IN+ +R Sbjct: 61 MKDVIFAGSQFRKPLNKAEVTLVFDNKKRELAFNSDQVSITRRILRSGDSEFLINNQQVR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141 + D L S + P+ I S +RR Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158 >gi|12382276|gb|AAG53093.1|AF306547_1 SMC2-1 [Arabidopsis thaliana] Length = 1175 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA+ +V FD G NG GK+NIL++I F ++ + R A Sbjct: 1 MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G V G E +I++ + + L IN Sbjct: 61 NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + + N + V + + Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQG 148 >gi|269836286|ref|YP_003318514.1| chromosome segregation protein SMC [Sphaerobacter thermophilus DSM 20745] gi|269785549|gb|ACZ37692.1| chromosome segregation protein SMC [Sphaerobacter thermophilus DSM 20745] Length = 1183 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 18/158 (11%) Query: 6 KIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASY 61 ++K L + F+++A+ VFD T +G NG GK+NI EA+ + R Sbjct: 4 RLKRLELHGFKSFATPTTFVFDPGITAIIGPNGSGKSNIAEAVRWALGEQSYASLRGRRT 63 Query: 62 ADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSV-RCLQINDVVIRV 112 DV GS + ++ G + I + R RS IN +R+ Sbjct: 64 EDVIFAGSAARAPLGMAEVSLTLDNESGDLPLPFSEITITRRAYRSGENQYFINGARVRL 123 Query: 113 VDEL-----NKHLRISWLVPSMDRIFSGLSMERRRFLD 145 D L +D + S ERR + Sbjct: 124 KDVLQVTASLGQAYTVIGQGLVDAVLSQRPEERRGLFE 161 >gi|291279725|ref|YP_003496560.1| chromosome segregation protein SMC [Deferribacter desulfuricans SSM1] gi|290754427|dbj|BAI80804.1| chromosome segregation protein SMC [Deferribacter desulfuricans SSM1] Length = 1122 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 26/166 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +K + L + F+++ + F T VG NG GK+NIL+AI ++ + R S Sbjct: 1 MKFRKLILQGFKSFVDKTVIEFPDGITCIVGPNGSGKSNILDAIRWVFGEQSPKELRGDS 60 Query: 61 YADVTRIGSPS-----------FFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS + S A E L++ISI + R IN Sbjct: 61 MDDVIFAGSENRKPSGYCEVTLVVSDVAEHIAEKWGTLSEISITRKYY-RTGEREYLING 119 Query: 108 VVIRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLD 145 R+ D + R ++ +++I E R F D Sbjct: 120 KKCRLKDIRELFYDTGIGARSISIIEQGKVEKIIQASPEEMRLFFD 165 >gi|218291548|ref|ZP_03495422.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius LAA1] gi|218238643|gb|EED05868.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius LAA1] Length = 1190 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 99/283 (34%), Gaps = 29/283 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K ++I F+++A ++V T VG NG GK+NI +A+ ++ + R + Sbjct: 1 MYLKQIDILGFKSFADKTQIVLSPGITAIVGPNGSGKSNIADALRWVLGEQSVRNLRGSK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS + ++ + ++ + T R+ R IN R Sbjct: 61 MEDVIFAGSELRKATNLCEVSITLDNTDHHLPVTFEEVTITRRAFRSGESEYWINRQPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ + S +RR + + + R + E Sbjct: 121 LKDIHELFMDTGLGREAYSIIGQGKIEEMLSTRPEDRRGPFEDAAGIVK--FKHRRKEAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R + L + +EAQ+ L IA E ALS I E Sbjct: 179 RKLEETAANLVRV---DDILAELEAQLGPLAEARRIA--ERYQALSDEIEETEIALLVVE 233 Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 I +L + A + E ++L + R+ L Sbjct: 234 IDRLHERYEQLKRQVAREEAARNEAQERLRLSEEAWKARRQAL 276 >gi|239826586|ref|YP_002949210.1| chromosome segregation protein SMC [Geobacillus sp. WCH70] gi|239806879|gb|ACS23944.1| chromosome segregation protein SMC [Geobacillus sp. WCH70] Length = 1187 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L+I F+++A + + F T VG NG GK+NI +AI ++ + R A Sbjct: 1 MFLKRLDIIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS S ++ + + + + R RS IN R Sbjct: 61 MEDIIFAGSDSRKPLNVAEVTITLDNEDQFLPLDYQEVSITRRVYRSGESEFFINKQPCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|331019823|gb|EGH99879.1| putative conjugative transposon DNA recombination protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 553 Score = 58.8 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP----GRGF 56 + I+ L + F+ + F+ IFVGDN GK+ ILEA+ + GR F Sbjct: 1 MLIESLRLINFKKFKDQTFDFNEDVNIFVGDNNAGKSTILEALEIVLNSQYRGRSF 56 >gi|257793002|ref|YP_003186401.1| SMC domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479694|gb|ACV60012.1| SMC domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 514 Score = 58.8 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 93/275 (33%), Gaps = 28/275 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASYA 62 +KI + + FR++ F T+ G NG GK+ + EA+ + G R+ Sbjct: 1 MKILSIQLENFRSFTEASFQFHD-ITVISGHNGAGKSTLAEAVVWCLFGTDIAGRQKQDE 59 Query: 63 DVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + R+G + + G + TR R L +N ++ Sbjct: 60 KLMRLGEKRMAVTVTWLIHGKSVVIS-----RTRASRQGSTLLVNGKRA-QPGQIEGWFG 113 Query: 122 IS-----WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 VP S E + L R V I + + + L + Sbjct: 114 TVQEFLSVFVPGYFS--SLEPKEAKTVLSRCVPDIPKE--DVLARMTSV--HASMLARDQ 167 Query: 177 YFDSSWCSSIEAQMAELGVKI---NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + SIE M ++ +I R+ + + + E P++ S+T Sbjct: 168 FV--MGLDSIEFAMQKVRDEIKECEAERLRLEGQCQAYQAVLRRGEPQPYV-PSVTDEER 224 Query: 234 GKFDQSFCALKE-EYAKKLFDGRKMDSMSRRTLIG 267 +++ + L E E ++ R D +RR +G Sbjct: 225 ARYEAAKRELMELEASQGNRKERLRDLYARRDSLG 259 >gi|15241831|ref|NP_201047.1| SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter [Arabidopsis thaliana] gi|146325733|sp|Q9C5Y4|SMC21_ARATH RecName: Full=Structural maintenance of chromosomes protein 2-1; Short=AtSMC2-1; AltName: Full=Chromosome-associated protein E-1; Short=AtCAP-E1; AltName: Full=Protein TITAN 3 gi|10178072|dbj|BAB11491.1| chromosome assembly protein homolog [Arabidopsis thaliana] gi|332010222|gb|AED97605.1| structural maintenance of chromosomes protein 2-1 [Arabidopsis thaliana] Length = 1175 Score = 58.8 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA+ +V FD G NG GK+NIL++I F ++ + R A Sbjct: 1 MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G V G E +I++ + + L IN Sbjct: 61 NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + + N + V + + Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQG 148 >gi|67924337|ref|ZP_00517770.1| GTP-binding [Crocosphaera watsonii WH 8501] gi|67853823|gb|EAM49149.1| GTP-binding [Crocosphaera watsonii WH 8501] Length = 1221 Score = 58.8 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + +K + +S F+++ + + F T+ G NG GK+NIL+A+ F L+ +G R Sbjct: 2 VHVKRIELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61 Query: 61 YADVTRIGSPS 71 D+ S Sbjct: 62 LPDLINHNHSS 72 >gi|296328619|ref|ZP_06871136.1| conserved hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154218|gb|EFG95019.1| conserved hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 602 Score = 58.8 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 69/414 (16%), Positives = 142/414 (34%), Gaps = 67/414 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K L + FR Y V T FVG N VGK+ ILEA+ F Sbjct: 1 MKLKQLKLKNFRGYKEENYVEFENLTAFVGKNDVGKSTILEALEI------FFNNKTVQC 54 Query: 65 TRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVR---------CLQINDVVIRV 112 R + + + DI I L++ + +++ L+I V Sbjct: 55 EREDLSVNHKDEDENIEISCVFSDVDIPIILDSNFETNLKDEYLLNKDGFLEIKKVFKCS 114 Query: 113 VDELNKHLRISWLVPSM----DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + + + I PS D + + +RR + + P+ ++ + Sbjct: 115 IAKPKANSYIVCCYPSEENCKDLLLLKSTELKRRAENLDI----PK-----ENYNASI-- 163 Query: 169 RNRLLTEGYFDS-SWCSSIEAQMA---ELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 N + F++ S + +E +A E KI E + + ++ I Sbjct: 164 -NASIRRAIFNNFSDLNLVETDLAVDKEDSKKIFNKLEEYFPMYALFQSDRASSDSDKEI 222 Query: 225 ----KLSLTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRT-----LIGP----- 268 +++++ + G + +KEE K + + ++ + + P Sbjct: 223 VDPMQIAISQAIKG-LEVEINKIKEEVKNKTLEIANKTLEKLKEMNSTLADSLIPEFKAE 281 Query: 269 ----HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR--LISNTTGFAPILLLDEI 322 L ++ D GS G ++++L+ F A A L N+ I +E Sbjct: 282 PKFDSLFKLSINSDDGIAINKRGS-GVRRLILLNFFRAEAERQLKENSKKNNIIYAFEEP 340 Query: 323 SAHLDEDKR----NALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAKFMRISNHQ 371 + + + ++ QI +T ++ L E+ + ++ + Sbjct: 341 ETSQHPNHQIMLIESFLKLSQKENCQIILTTHTPALAGMLPLESLRLVKKEEGK 394 >gi|117306688|gb|AAI26824.1| SMC1A protein [Bos taurus] Length = 176 Score = 58.8 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 10/126 (7%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63 +K + I F++Y + + T +G NG GK+N+++AISF+ + R + D Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63 Query: 64 VTR---IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 + +G P+ F V EG D + S +IN+ V+ + E ++ Sbjct: 64 LIHGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSE--YKINNKVV-QLHEYSEE 120 Query: 120 LRISWL 125 L + Sbjct: 121 LEKLGI 126 >gi|330794012|ref|XP_003285075.1| hypothetical protein DICPUDRAFT_148904 [Dictyostelium purpureum] gi|325084998|gb|EGC38414.1| hypothetical protein DICPUDRAFT_148904 [Dictyostelium purpureum] Length = 1122 Score = 58.8 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 24/222 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62 I + ++ F Y+ + + + +G NG GK++I+ AI+ L G R+ Sbjct: 70 IVRIKLNNFVTYSDVEFRPGPRLNVVIGPNGSGKSSIVCAIA-LGLGGSPNLLGRQKQLG 128 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH--L 120 D + G+ S F + +G I IK + + + + ++N I D L + L Sbjct: 129 DFVKRGTMSGFVEI-ELFNPDGENFI-IKRDLKKEGNSGDFKLNGKNITKADLLARIKEL 186 Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRM-VFAIDPRHRRRMIDFERLMRGRNRLLT 174 I +P + L+ +D + + + L++ R+ Sbjct: 187 NIQVENLCQFLPQDKVVGFASMSPTELLLETEKAIGVDNMY----ENHQELIKLRSDSSK 242 Query: 175 EGYFDSSWCSSIEA-----QMAELGVKINIARVEMINALSSL 211 + S +E Q E V+ R +++ + S Sbjct: 243 DNQNIDSQRQQLEEKKDLNQQLERDVERFREREKILEEIESY 284 >gi|229829000|ref|ZP_04455069.1| hypothetical protein GCWU000342_01085 [Shuttleworthia satelles DSM 14600] gi|229792163|gb|EEP28277.1| hypothetical protein GCWU000342_01085 [Shuttleworthia satelles DSM 14600] Length = 1186 Score = 58.8 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 21/166 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I F+++A+ + L F T VG NG GK+N+ +A+ ++ R R AS Sbjct: 1 MYLKSIEIHGFKSFANKIVLDFHKGITAIVGPNGSGKSNVSDAVRWVLGEQSARQLRGAS 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ + + ++ + + K T R R +N R Sbjct: 61 MQDVIFAGTQNRKALGYAYVAITLDNSDQALPVDYKELTVARRVYRSGESEYLLNGTPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149 + D + K +++I SG ERR D V Sbjct: 121 LRDVNELFFDTGIGKEGYSIIGQGQIEKILSGKPEERRELFDEAVG 166 >gi|282899440|ref|ZP_06307407.1| Chromosome segregation protein SMC [Cylindrospermopsis raciborskii CS-505] gi|281195704|gb|EFA70634.1| Chromosome segregation protein SMC [Cylindrospermopsis raciborskii CS-505] Length = 1193 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 78/237 (32%), Gaps = 51/237 (21%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + ++ F+++ + + T+ G NG GK+NIL+A+ F LS +G R Sbjct: 2 VHIKRVELTNFKSFGGTTSVPLLPGCTVISGPNGSGKSNILDALLFCLGLSSSKGMRADK 61 Query: 61 YADVTRIGS--------PSFFSTFARVEGMEGLADISIKLETRDDRSV----------RC 102 D+ + + + M +++ ++ + R Sbjct: 62 LPDLVNNNQTAKGRNSVEAIVTVTFDISDMVSPPEVTEEVTQNGQENKSPTLTQWSVTRR 121 Query: 103 LQINDV-----------VIRVVDELNKHLRISWLVPSMDRIFSGLS---------MERRR 142 L++N + EL++ L + P + ERR Sbjct: 122 LRVNSQGSYTSNYYINGSSCTLTELHEELERLRIYPEGYNVVLQGDVTSIISMNGKERRE 181 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199 +D + + ++R + L E C IE ++ ++ Sbjct: 182 IIDELAG---------VAAYDRKINQAKGTLEEVKEKEDSCRIIEGELIAQRDRLYQ 229 >gi|170077736|ref|YP_001734374.1| chromosome segregation protein SMC [Synechococcus sp. PCC 7002] gi|28375561|emb|CAD66604.1| SMC protein [Synechococcus sp. PCC 7002] gi|169885405|gb|ACA99118.1| chromosome segregation protein SMC [Synechococcus sp. PCC 7002] Length = 1209 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 61/387 (15%), Positives = 119/387 (30%), Gaps = 70/387 (18%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + +S F+++ ++ + T+ G NG GK+NIL+ I F L+ +G R Sbjct: 2 VHIKQIELSHFKSFGGTVAVPLRPGFTVVSGPNGSGKSNILDGILFCLGLASSKGMRAER 61 Query: 61 YADVTRI------GSPSFFSTFA---------------------RVEGMEGLADISIKLE 93 D+ G+ + D ++ + Sbjct: 62 LPDLINHKHSQGKGAAETVVSVTFDLSDLAQQYQTEATEASELKEFLAQFQSHDWTVTRK 121 Query: 94 TRDDRSV---RCLQINDVVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERR 141 R +S IND EL++ L + P + RI + ERR Sbjct: 122 LRVTKSGSYASTYYINDQPC-TATELHEQLNRLRIYPEGYNVVLQGDVTRIITMNGRERR 180 Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 +D + + +F+R + L C I ++ K+ R Sbjct: 181 EIIDELAG---------VAEFDRKITQTRETLNAVKEREEKCHIIRQELERNLEKLADDR 231 Query: 202 V--EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 + E L + Q+E + + K + + +E + + +D Sbjct: 232 LKAEQYQRLKIDLARQQQEEVL--LTWRSLQLQEEKLQRDLASSAQERTQLTQNLNALDG 289 Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 +T + V + ++ S LA + + G L Sbjct: 290 EIFQTGQTLESLNAKVKALGEDEQLSVAS-----------KLATQKAKRHQWGQRQTELE 338 Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIF 346 ++ L ++ L V Q+ Sbjct: 339 EDQRRSLQLHRQ--LLETVQVNQQQLL 363 >gi|56964062|ref|YP_175793.1| chromosome segregation protein SMC [Bacillus clausii KSM-K16] gi|56910305|dbj|BAD64832.1| chromosome segregation protein SMC [Bacillus clausii KSM-K16] Length = 1188 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 60/304 (19%), Positives = 107/304 (35%), Gaps = 42/304 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A + + F T VG NG GK+NI +A+ ++ R R A Sbjct: 1 MFLKRLEVKGFKSFAEPILVDFVPGVTAVVGPNGSGKSNIADAVRWVLGEQSARSLRGAK 60 Query: 61 YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 D+ GS S A V + D + ++ + R L IN R Sbjct: 61 MEDIIFAGSDSRKAVNMAEVSLILDNEDGHLAIDYSEVSVTRRLYRSGESEYLINRHSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ I S + ERR + + Sbjct: 121 LKDIVDLFLDSGLGREAYSIIGQGKIEEILSSKAEERRTIFEEAAGV-----LKYKTRKN 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA----------RVEMINALSSLIM 213 + ++ + + + +E Q+ L + +IA R I ++ I Sbjct: 176 KAVKRLEQTEENLVRVADILNELEEQVEPLREQASIAEEYKLLAEEQRTLDIQVIAQEIT 235 Query: 214 EYVQKENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 E + KL +L L + D E+ +KL R+ + R+T H+ Sbjct: 236 ELYENWTAESDKLKTLKEQLQARKDS-----LEKAEEKLASYREEHAAIRQTAADLHKKR 290 Query: 273 LIVD 276 L V Sbjct: 291 LEVS 294 >gi|15643938|ref|NP_228987.1| chromosome segregation SMC protein, putative [Thermotoga maritima MSB8] gi|4981731|gb|AAD36257.1|AE001774_14 chromosome segregation SMC protein, putative [Thermotoga maritima MSB8] Length = 1170 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++K L + F+++ L F + T VG NG GK+NI++AI ++ + R + Sbjct: 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASE 60 Query: 61 YADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 D+ GS + S + + E +I++ E + +N +R+ D Sbjct: 61 KFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELK-RTGENTYYLNGSPVRLKD 116 >gi|229168918|ref|ZP_04296635.1| DNA repair protein recN [Bacillus cereus AH621] gi|228614510|gb|EEK71618.1| DNA repair protein recN [Bacillus cereus AH621] Length = 583 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 104/277 (37%), Gaps = 51/277 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110 G+ A+ E ++ + + + RD ++N ++ Sbjct: 61 YGTEKAEIEGLFYVEDDKHPCIAKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164 ++ E+ K L + + ER F+ +R+V + ++ D+E+ Sbjct: 121 SILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGNRIVKQLG-VYQNVYTDYEK 176 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 L + L S E QMA R+++I I + K + Sbjct: 177 LKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKMD-EEY 216 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 +L+ F++ + AL + Y DG+ +D + Sbjct: 217 ELTEERLKISNFEKIYKALGDAYRSLSGDGQGLDHVR 253 >gi|222100368|ref|YP_002534936.1| Condensin subunit Smc [Thermotoga neapolitana DSM 4359] gi|221572758|gb|ACM23570.1| Condensin subunit Smc [Thermotoga neapolitana DSM 4359] Length = 1170 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++K L + F+++ L F + T VG NG GK+NI++AI ++ + R + Sbjct: 1 MRLKKLFLKGFKSFGRPSLITFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASE 60 Query: 61 YADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 D+ GS + S + + E +I++ E + +N +R+ D Sbjct: 61 KFDMIFSGSENLPPAGSAYVELVFEENGEEITVARELK-RTGENTYYLNGSPVRLKD 116 >gi|126334861|ref|XP_001374808.1| PREDICTED: similar to SMC2 protein [Monodelphis domestica] Length = 1197 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 18/123 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + R L IN Sbjct: 61 NLQDLVYKNGQAGITKATVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNRYL-ING 119 Query: 108 VVI 110 V Sbjct: 120 VNA 122 >gi|330832995|ref|YP_004401820.1| chromosome partition protein [Streptococcus suis ST3] gi|329307218|gb|AEB81634.1| chromosome partition protein [Streptococcus suis ST3] Length = 1177 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 108/281 (38%), Gaps = 31/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLA---DISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ G IK+E RS I+ +R Sbjct: 61 MPDVIFSGTESRKALNYASVVVTLDNSTGFIANKQKEIKVERHIYRSGDSEYLIDGQKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFEEAAGVLK--YKTRKKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-MINALSSLIMEYV 216 + L Y + +E AQ A+ ++++ R E ++ L + ++ Sbjct: 179 SKLAQAQGNLDRLDDIIYELDNQVKPLEKQAQTAKKFLELDGQRKELYLDVLVAQLLLGK 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 +K + +L + + L++E + L + R Sbjct: 239 EKLSEKEAELESVKTELTSYYKQRSELEQE-NQNLKEKRHR 278 >gi|299537771|ref|ZP_07051060.1| DNA repair protein recN [Lysinibacillus fusiformis ZC1] gi|298726750|gb|EFI67336.1| DNA repair protein recN [Lysinibacillus fusiformis ZC1] Length = 563 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 89/272 (32%), Gaps = 35/272 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I F L + F T+ G+ G GK+ I++A+ L+ GRG + R Sbjct: 2 LRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRG-----NTEFIR 56 Query: 67 IGS-----PSFFSTFARVE---------GMEGLADISIKLETRDDRSVRCLQINDV--VI 110 G+ F + V G+E D I +D ++N + Sbjct: 57 HGARKAELGGLFQISSSVHPVLKKLEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPL 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRG 168 V+ ++ L + +F + + I +R + ++ L + Sbjct: 117 SVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQKNYRAQYDEYRLLKKD 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMI--NALSSLIMEYVQ 217 + + + + QM EL ++ R ++ N + + Sbjct: 177 LASISIDEQLMAQRIDLYQFQMKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYE 236 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 L G G + + + E++ + Sbjct: 237 AIQGETKGLDWIGTAMGALEDA-ATVDEQFKE 267 >gi|301311842|ref|ZP_07217764.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300829944|gb|EFK60592.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 472 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 50/365 (13%), Positives = 113/365 (30%), Gaps = 42/365 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + FRNY + + ++T+ +G N VGKTN++ A+ L R S D Sbjct: 1 MILADITLKGFRNYKDAHIKLE-KNTLIIGANDVGKTNLIWAMRLLLD----RSLSDYD- 54 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND---VVIRVVDELNKHL 120 S F+ + L I E + + N+ D + Sbjct: 55 IEPRSSDFYVLEETNSFVILLHFTDITEECVLSKLRGKISDANEMYMSYNASRDPNTGKI 114 Query: 121 RISWLVPSMDRIFSG-LSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRNRLLTEGYF 178 + + + S + R++L+ ++ D + + + RN L Sbjct: 115 SYTIKAGASVELLSDIEAHYYRKYLNI-------KYISCRRDLYAFISKERNFLFQNAKE 167 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 S E ++ + + + E H T ++ + + Sbjct: 168 SRSTQEEEED-------------NTLLQEIKTKLQEANNLIPTLHYISKATNSINSELKE 214 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + +D T + +D V+ + + Sbjct: 215 MSIYNNNQDVYFDTNSSNIDKFIDSTSVSSKTNDTPVNIGGDGRLNQ---------IYLS 265 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFMTGTDKSVFDS 357 ++ + I+ ++E AHL ++ L +++ QIF+T + Sbjct: 266 LWATKHEIERPKLEEVSIVCIEEPEAHLHPHQQQKLATYLSNKICGQIFLTSHSPQITSE 325 Query: 358 LNETA 362 + + Sbjct: 326 FSPNS 330 >gi|284045052|ref|YP_003395392.1| ATPase-like protein [Conexibacter woesei DSM 14684] gi|283949273|gb|ADB52017.1| ATPase-like protein [Conexibacter woesei DSM 14684] Length = 416 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 50/385 (12%), Positives = 128/385 (33%), Gaps = 56/385 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYAD 63 ++ ++I F++ + L + + G N GK+N+L+A L+ R A + Sbjct: 2 LQRIHIRGFKSLVDVELEL-PRLAVLAGPNAAGKSNVLDAFQMLARSGTQRTLADALDSP 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + +F + + ++E + I+ R + E ++ Sbjct: 61 IRGFPTEAFTFPSGGLAELMVQNSARFEIEA-------DVAIDRADTRALLERVRYRLGV 113 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL-----LTEGYF 178 + P + R D R +R++ R+ L E Sbjct: 114 EIDPDTGVLALADEYLARLTKDWQP----KDSARIEAQDDRILIRRSGSGGRPPLEERAT 169 Query: 179 DSSWCSSIEAQMA--------ELGVKINIARVEMINALSSLIMEYVQKE------NFPHI 224 + +W S +A+++ L + R ++ +++ +E N H+ Sbjct: 170 NHTWLS--DARLSGTPYPLFDSLRAEFRQWRTYYLDPGTTMRAAAPPREVPDIGVNGEHL 227 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 L L + +F A+ + +D ++R + D+ ++ Sbjct: 228 APFL-YGLKTRNGPAFEAVHRALKSVIPAIGSLDVDLDTKRGTL-----DIQIEQDGTTF 281 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI- 341 + S G +V+ + T + ++ +E + + + + ++ + Sbjct: 282 SSRVVSEGTLRVLALCAI--------AVTARSGLVAFEEPENGVQPQRLDRIAELLASVT 333 Query: 342 ---GSQIFMTGTDKSVFDSLNETAK 363 +Q+ +T ++ E A+ Sbjct: 334 RRGSAQLVVTTHSPGFVAAILERAR 358 >gi|255692105|ref|ZP_05415780.1| putative RecF/RecN/SMC N domain protein [Bacteroides finegoldii DSM 17565] gi|260622203|gb|EEX45074.1| putative RecF/RecN/SMC N domain protein [Bacteroides finegoldii DSM 17565] Length = 364 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 IK + I F++ + L +F+G NG GK+NILEA+ ++ R Sbjct: 2 IKTITIKNFKSITAADLPLG-NVNVFIGANGSGKSNILEAVGMVAAER 48 >gi|268531032|ref|XP_002630642.1| Hypothetical protein CBG02311 [Caenorhabditis briggsae] gi|187037518|emb|CAP24184.1| CBR-SMC-5 protein [Caenorhabditis briggsae AF16] Length = 1074 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 91/266 (34%), Gaps = 25/266 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62 + + F Y + A + +G NG GK++I+ I L+ G R Sbjct: 22 LLRVVFHNFLTYEHTSFIPTASLNMILGHNGSGKSSIICGIC-LACGGSPKTLGRSEKIT 80 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + R G + + ++G + + + + L + +++L KH I Sbjct: 81 EYIRHGCQEGYVEVVIADNVKGPQTVRLTIRVGKAPEYK-LNNSHATQSDINDLRKHYNI 139 Query: 123 SWLVPSMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMIDFERL----MRGRNRLLTEG 176 P FL D++ + + + E+ + R+R L E Sbjct: 140 QIDNP-------------CAFLAQDKVKSFSEQSSIELLKNTEKAASDDLDQRHRSLMEQ 186 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 DS + A + + R +++ + + + + ++ + + Sbjct: 187 RKDSMTIEELCATSEKAKKHLEDTRTKIMPLVENYRKKMALESKLRLLEKKMACMEFQEA 246 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSR 262 D+ + ++ L + RK+++ + Sbjct: 247 DEEYAKEQKIADNALVEYRKVEAKIK 272 >gi|333030699|ref|ZP_08458760.1| hypothetical protein Bcop_1586 [Bacteroides coprosuis DSM 18011] gi|332741296|gb|EGJ71778.1| hypothetical protein Bcop_1586 [Bacteroides coprosuis DSM 18011] Length = 522 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 I + + F+ + +L L F+ IFVGDN GK+ IL+AI ++ G Sbjct: 4 ITKIKLHNFKRFKNLTLDFNPDINIFVGDNESGKSTILQAIDLVARG 50 >gi|326430011|gb|EGD75581.1| SMC2 protein [Salpingoeca sp. ATCC 50818] Length = 1212 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + I + I F++YA + FD G NG GK+NIL+AI F +S R + Sbjct: 1 MFISEIIIDGFKSYAQRTVVSDFDPFFNAITGLNGSGKSNILDAICFVLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G + G E I++ + + IN Sbjct: 61 TLQELIYKQGQAGVTKATVSIVFNNEDKDQSPIGYEQHDTITVTRQIAIGGKNK-YMING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + N + V + + Sbjct: 120 HNAQQSRVANLFQSVQLNVNNPHFLIMQG 148 >gi|226313208|ref|YP_002773102.1| chromosome partition protein SMC [Brevibacillus brevis NBRC 100599] gi|226096156|dbj|BAH44598.1| chromosome partition protein SMC [Brevibacillus brevis NBRC 100599] Length = 1190 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L ++ F+++A L F T VG NG GK+N+ ++I ++ + R A Sbjct: 1 MYLKRLELAGFKSFADRTELEFVPGVTAVVGPNGSGKSNVSDSIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ GS +F ++ + D+ + R R IN+ R Sbjct: 61 MEDIIFAGSDKRKPVNFAEVTLTLDNTDRSLDVEYSEVSVTRRVYRSGDSEYYINNRSCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 13/163 (7%) Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK---KLF 252 + R + +++ + + E K+ + + + +F ++F A+ E++ +LF Sbjct: 996 ERLSERQQFLSSQEADLNE--AKDMLYQVIQEMDAEMSRRFKETFDAISEQFRDVFVQLF 1053 Query: 253 DGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 G + D + L+ + K +A S GE+ + + + A R+ Sbjct: 1054 GGGRADLVLSNPDNLLETGIDIVAQPPGKKLQNLALLSGGERALTAMALLFAILRV---- 1109 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDK 352 P +LDE+ A LDE N + +Q F+ T + Sbjct: 1110 -KPVPFCVLDEVEAALDEANVNRFAEYMHHFSNQTQFICVTHR 1151 >gi|222152724|ref|YP_002561901.1| chromosome partition protein [Streptococcus uberis 0140J] gi|222113537|emb|CAR41328.1| putative chromosome partition protein [Streptococcus uberis 0140J] Length = 1181 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 101/278 (36%), Gaps = 48/278 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ F+ T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKTIEMQGFKSFADKTKIEFEKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 D+ G+ S + FA V + +D IK ++ R R + I+ +R Sbjct: 61 MPDIIFAGTESRNALNFAEVAIVLDNSDAFIKDAPKEIRVERHIYRNGDSDYIIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + ++ ++ Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRTIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 + LT+ + ++ Q+ L + I + Sbjct: 172 TRKKETQSKLTQTQDNLDRLEDIIFELDNQVKPL-------------EKQAEIAKKFLHL 218 Query: 220 NFPHIKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256 + +L L + D + DQ A KEE +L + + Sbjct: 219 DADRKQLQLDILVEDVQQDQKSMAEKEEDLGQLKENLR 256 >gi|238567301|ref|XP_002386215.1| hypothetical protein MPER_15628 [Moniliophthora perniciosa FA553] gi|215437499|gb|EEB87145.1| hypothetical protein MPER_15628 [Moniliophthora perniciosa FA553] Length = 74 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ + + +F + SL F +G NG GK+ +L AI+ G+ R + Sbjct: 8 IESIEMHQFMCHKSLSFNFGPNINFIIGHNGSGKSAVLSAITVALGGKTNSTGRGSGLKA 67 Query: 64 VTRIGSP 70 R G Sbjct: 68 FIREGQQ 74 >gi|39996824|ref|NP_952775.1| nuclease SbcCD subunit C [Geobacter sulfurreducens PCA] gi|39983712|gb|AAR35102.1| nuclease SbcCD, C subunit, putative [Geobacter sulfurreducens PCA] gi|298505833|gb|ADI84556.1| DNA repair exonuclease SbcCD, C subunit, putative [Geobacter sulfurreducens KN400] Length = 813 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 ++I +++ +++ L F A + G NGVGK+ + EAI + G Sbjct: 1 MRILSIHLKNIKSHRDTELTFSAGINVLSGPNGVGKSTVFEAIGYALFG 49 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 27/180 (15%) Query: 184 SSIEAQMAELGVKI-----NIARVE----MINALSSLI-MEYVQKENFPHIKLSLTGFLD 233 + AQ+A LG +I + R+E + L I + ++ +F + + + Sbjct: 607 DRLVAQVASLGQQIENLEKDRKRLEDEIGKLKLLKDEIGRKQAERNSFEQKEKLVKFLRN 666 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG----PHRSDLIVDYCDKAI------T 283 F L E + +++ + D + R + + D + Sbjct: 667 QVFKNVSAQLSERFREEI--SLRADRIYRTIAEADEELVWSENYQIVLRDMTDGVVRERS 724 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 S G+ +V + LA + I I DE +++LD +R L I Sbjct: 725 DDQLSGGQTMSAVVALRLALLQTIGAR-----IAFFDEPTSNLDASRRENLATAFRAIDV 779 >gi|325968969|ref|YP_004245161.1| SMC domain protein [Vulcanisaeta moutnovskia 768-28] gi|323708172|gb|ADY01659.1| SMC domain protein [Vulcanisaeta moutnovskia 768-28] Length = 803 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA--DV 64 I + I FR+ + V G NG GKT+ILEAI+ G + R Y D+ Sbjct: 2 ITRVEIENFRSIIRGKAVITEGINFIHGPNGSGKTSILEAIAIALYGSEWVRGKYRLGDL 61 Query: 65 TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 R G+ S + ++G + L + E + L + D Sbjct: 62 VRRGASSAIIRVEYLGIDGHKYLIQRAFSTEKTIESQTYILDEGGRRVAARDR 114 >gi|297793811|ref|XP_002864790.1| hypothetical protein ARALYDRAFT_496418 [Arabidopsis lyrata subsp. lyrata] gi|297310625|gb|EFH41049.1| hypothetical protein ARALYDRAFT_496418 [Arabidopsis lyrata subsp. lyrata] Length = 1175 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA+ +V FD G NG GK+NIL++I F ++ + R A Sbjct: 1 MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G V G E +I++ + + L IN Sbjct: 61 NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + + N + V + + Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQG 148 >gi|296242551|ref|YP_003650038.1| SMC domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296095135|gb|ADG91086.1| SMC domain protein [Thermosphaera aggregans DSM 11486] Length = 937 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 5/98 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + + + F ++ +VF+ VG NG GK++ILEAI + G G+R D+ Sbjct: 8 LHKITLEGFLSHGETSIVFEKGVNTIVGPNGAGKSSILEAIYYALTGDGWRIRRKEDLVN 67 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104 ARVE ++E + L+ Sbjct: 68 -----LTRRSARVELEFSHEGRKYQVERQIPSGKAVLR 100 >gi|260102298|ref|ZP_05752535.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083895|gb|EEW68015.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 689 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 60/420 (14%), Positives = 135/420 (32%), Gaps = 82/420 (19%) Query: 4 RIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------ 56 ++ I + I+ FR + ++ F I VG N +GKT I+ AI + F Sbjct: 5 KLFISSVEITNFRTFKEKQIIRFTEGINILVGPNNIGKTTIISAIRLIFDKNKFGLDIND 64 Query: 57 --RRASYADVTR------------------IGSPSFFSTFARVEGMEGLADISIKLETRD 96 + + ++ S + + ++ I ++ + Sbjct: 65 FSKTETKEELKNCSPKITVSVNLQKSNKEGSDSDDLLAIRNWLTDIDNPYKAKITMQFQL 124 Query: 97 DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI-------FSGLSMERRRFLDRMVF 149 ++ ++ +D++ WL + + F G S + +D + Sbjct: 125 PTKYEKAYLD--AVKDLDDIGS----VWLELEDEFLPKYQRKYFVGESAQP--LMDNSLS 176 Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSWCSSIEAQMAELG-VKINIARVEMIN 206 + ++ + D E+ M N+ L + + ++ + K R + + Sbjct: 177 RFNCQYLPAIRDAEKRMNSGNKYLLNKLLNFFIDYDLKSNEELKKSDIEKKMQKRHKDFH 236 Query: 207 ALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 L+ ++ + L + FD E+ L D D + + Sbjct: 237 DLAVKLLNNLSPRFKEGKKEMLKYSSQTGATFDGEEP----EFNSALNDH---DILKEFS 289 Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR------LISNTTGFAPILL 318 L+V + + I G ++ + + LA + + + P LL Sbjct: 290 --------LVVKNGESNVPINLNGLGYNNLIYISLVLAELQQSRDNSYFGDNSSVFPFLL 341 Query: 319 LDEISAHLDEDKRNALFRIVT---------DIGSQIFMTG-----TDKSVFDSLNETAKF 364 ++E AHL D + + + + Q+ +T T + D L +K+ Sbjct: 342 IEEPEAHLHPDMQYDFLKFLQNNIKDGTTSETAKQVIITTHSPNITAAASLDDLIVLSKY 401 >gi|103487751|ref|YP_617312.1| chromosome segregation protein SMC [Sphingopyxis alaskensis RB2256] gi|98977828|gb|ABF53979.1| Chromosome segregation protein SMC [Sphingopyxis alaskensis RB2256] Length = 1147 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++IK L ++ F+++ L + T VG NG GK+N+LEAI ++ S + R Sbjct: 1 MQIKRLRLTGFKSFVEPTELRIEPGLTGVVGPNGCGKSNLLEAIRWVMGESSPKSMRGGG 60 Query: 61 YADVTRIGSPS-FFSTFARV 79 DV G+ S FA V Sbjct: 61 MEDVIFAGTSSRPARDFAEV 80 >gi|300707107|ref|XP_002995776.1| hypothetical protein NCER_101251 [Nosema ceranae BRL01] gi|239604988|gb|EEQ82105.1| hypothetical protein NCER_101251 [Nosema ceranae BRL01] Length = 871 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 6 KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 KIK L I+ F++Y S + FD+ T +G NG GK+NIL+A+ F+ + Sbjct: 3 KIKSLEITNFKSYKSSHVIPFDSHFTCIIGPNGSGKSNILDAMVFVMTNK 52 >gi|269860020|ref|XP_002649733.1| chromosome segregation protein SMC1 [Enterocytozoon bieneusi H348] gi|220066792|gb|EED44263.1| chromosome segregation protein SMC1 [Enterocytozoon bieneusi H348] Length = 1062 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 11/146 (7%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASY 61 +++ + + F++Y + + T +G NG GK+NIL+AISF + R + Sbjct: 1 MQLLKIQVRNFKSYKGKHTIGPFDKFTCIIGPNGSGKSNILDAISFATNIELSYLRVNNP 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 ++ G+ + + ++ +IN+ +I + N L+ Sbjct: 61 LEMISNGATECEVSLF-------IDNLCFTKLFTASHQTYIYKINNKII-PIAIYNNQLK 112 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRM 147 ++P + R LD + Sbjct: 113 KINILPEIRNFIIYQGTLIRNNLDLL 138 >gi|182415724|ref|YP_001820790.1| chromosome segregation protein SMC [Opitutus terrae PB90-1] gi|177842938|gb|ACB77190.1| chromosome segregation protein SMC [Opitutus terrae PB90-1] Length = 1301 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 87/261 (33%), Gaps = 37/261 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A L F+ T VG NG GK+NI ++I ++ + R Sbjct: 1 MYLKALKLHGFKSFADPTMLRFEPGVTAVVGPNGCGKSNIADSIRWVLGEQSAKALRGGK 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ E G I++ R R + N R Sbjct: 61 MQDVIFEGADTRKPAQMCEVSLLLTECEKQLGSEYHEIEITRRVYRDGQSEYFFNGQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + + +D I S ERR + + ++ Sbjct: 121 LKDIQKLFMDTGIGRTSYSIMAQGQIDLILSSKPEERRSVFEEAAG---------ITKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R + + + + + E+G +I R + A+ + + + H Sbjct: 172 ---SQRREAMNKLALTDQNLARVADVIGEVGRQIGSLRRQASKAMRYKRLSFRLR----H 224 Query: 224 IKLSLTGFLDGKFDQSFCALK 244 + L+ + + + + L+ Sbjct: 225 LSLAWSAYHHAQLAATLAELE 245 >gi|171780117|ref|ZP_02921021.1| hypothetical protein STRINF_01905 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281465|gb|EDT46900.1| hypothetical protein STRINF_01905 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1179 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 105/283 (37%), Gaps = 35/283 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A + FD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEMQGFKSFADKTTIEFDKGVTAIVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ ++ +G A +I++E I+ +R Sbjct: 61 MPDVIFAGAENRKPLNYAQVVVSLDNSDGFIKDAKETIRVERHIYRNGDSEYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSVISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVEM-INALSSLIM-E 214 + L Y S +E Q A++ + + R ++ +N L I + Sbjct: 179 TKLNQTQDNLDRLDDIIYELESQVKPLERQ-AKVAKEFIGLEDERKQLHLNVLVEDIQTD 237 Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 V+ ++ S+ L ++Q E+ + L + R Sbjct: 238 KVRLDSLKEDLASIKSDLSAYYEQ--RQQFEKQNQALKEKRHQ 278 >gi|209886101|ref|YP_002289958.1| chromosome segregation protein SMC [Oligotropha carboxidovorans OM5] gi|209874297|gb|ACI94093.1| chromosome segregation protein SMC [Oligotropha carboxidovorans OM5] Length = 1154 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+ L + F+++ + + + T VG NG GK+N++EA+ ++ + + R A Sbjct: 1 MKLTRLRLHGFKSFVEATDFLIEPGLTGVVGPNGCGKSNLVEALRWVMGETSYKSLRAAD 60 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108 V G + + ++ + A S +++ R +R + +IN Sbjct: 61 MDSVIFSGSGNRPARNHAEVVMSIDNADRTAPSSMNDSELLEVSRRIEREAGSVYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQARPDQRRRVLED 166 Score = 43.0 bits (100), Expect = 0.074, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K +++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1042 GKKPQSLSLLSGGEQALTALALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1096 Query: 338 VTDIGSQI 345 + ++ SQ Sbjct: 1097 LHEMTSQT 1104 >gi|149248992|ref|XP_001528836.1| hypothetical protein LELG_05762 [Lodderomyces elongisporus NRRL YB-4239] gi|146453325|gb|EDK47581.1| hypothetical protein LELG_05762 [Lodderomyces elongisporus NRRL YB-4239] Length = 260 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 4/109 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 I+ L + F + L Q +G NG GK+ IL IS + R +S D Sbjct: 103 IEKLTLKNFMCHDFFELELGPQINFIIGRNGSGKSAILTGISVALGAKANDTNRGSSIRD 162 Query: 64 VTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111 + + G S + + +G + +R ++ + N I+ Sbjct: 163 LIKDGKSMSRITIVLKNDGSWAYRPEEYGRKIIIERKLQRVGTNSYSIK 211 >gi|328697890|ref|XP_001948837.2| PREDICTED: structural maintenance of chromosomes protein 6-like [Acyrthosiphon pisum] Length = 1049 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 3/120 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 IK + + F +++ L + + G NG GK+ I AI R R S Sbjct: 28 IKSITLENFMCHSNFHLSLNPRINFISGLNGSGKSAIQTAIVVGFGARASITNRATSLKS 87 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + G S + +G +D + + ++ LN++ R+ Sbjct: 88 LIKYGQTSAAVSITLANSGDGNSDCGPYRPEVYGKQITIVRQITESSTTYKFLNENNRVV 147 >gi|325185009|emb|CCA19500.1| ATSMC2 transporter putative [Albugo laibachii Nc14] Length = 1192 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 80/281 (28%), Gaps = 33/281 (11%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + I+ + I F++YA+ + FD G NG GK+NIL+AI F +S R Sbjct: 1 MHIEEIIIDGFKSYATRTVISGFDPHFNAITGFNGSGKSNILDAICFVLGISNLSQVRAG 60 Query: 60 SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G + G E IS+ + + IN Sbjct: 61 NLQELVYKQGQAGITKATVTIVFDNHNSNASPVGYEQYEQISVARQVIIGGRNK-YMING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 +V N + V S + + + + + P + E Sbjct: 120 HTAQVSQIQNLFHSVQLNVNSPHFLIMQGRITK-------ILNMKP--LEILSMIEEAAG 170 Query: 168 GR------NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 R L I A +AE + + E Sbjct: 171 TRMYETKKQAALRTMIKKDRKVEEINAILAEEITPTLEKLRQEKQQYLVWAANNTELERL 230 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 ++ + A ++ + R+ + + Sbjct: 231 ERFCIAYKYQKAVDVINTVDANVQQLEQNFESSRQREKKLQ 271 >gi|312887308|ref|ZP_07746910.1| SMC domain protein [Mucilaginibacter paludis DSM 18603] gi|311300204|gb|EFQ77271.1| SMC domain protein [Mucilaginibacter paludis DSM 18603] Length = 622 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 25/43 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +K++ + I FR + + Q +FVG NG GK+ IL++I Sbjct: 3 MKLERIEIKNFRGIEDATIELNDQLNLFVGINGSGKSTILDSI 45 >gi|295086863|emb|CBK68386.1| Predicted ATP-dependent endonuclease of the OLD family [Bacteroides xylanisolvens XB1A] Length = 593 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 68/369 (18%), Positives = 139/369 (37%), Gaps = 43/369 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRG--FRRASY 61 + + L+IS+FR + + L F I +G+N GKT I++A+ L G+ F Sbjct: 1 MYLSRLHISKFRVFDDITLYFKNGINILIGENNSGKTAIIDALRICLGCGKPDNFIYVQD 60 Query: 62 ADV-TRIGSPSFFSTFARVEGMEGLADISIKLET--------RDDRSVRCLQINDVVIRV 112 D+ +PS +T + + + D SI+ E +D+ + +Q++ I+ Sbjct: 61 GDLHVNPENPSEINTVIQFDLIFEFGDASIERECFYDFISQDKDNPDKQTIQLHLKFIQE 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 + K+ + RI G E ++ + I + + D Sbjct: 121 NNGKKKYFK---------RIIWGGDNEGQQVPYESLQEIFYTYLSPLRD--------AVS 163 Query: 173 LTEGYFDSSWCSSIEAQMAEL--GVKINIARVEMINALSSLIMEYVQKENFPHIKL--SL 228 Y + S + Q+ + G + E +L+ + + + + + + + Sbjct: 164 CLRPYSYDNKTSQLFNQLTKYDKGNESIPLNEEKKKSLAKNLYQIFENDAYDWKHILTTG 223 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRK-MDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 ++ + + LK + + GR+ D + L P + K T++ Sbjct: 224 KSKVNEHLEGTGITLKHPDIEMRYVGREFSDVVRGIELKCPVYKTVEAGQEQKYFTLSQN 283 Query: 288 STGEQKVVLVGIFLAHARLISN----TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 GE ++ + L LI+ LL++E AHL +N F + ++ S Sbjct: 284 GLGENNLIFTSVVL--GDLINRCEDHALEIYNALLVEEPEAHLHPQYQNTFFEYLNELQS 341 Query: 344 ---QIFMTG 349 Q+F+T Sbjct: 342 KGLQVFVTS 350 >gi|258511330|ref|YP_003184764.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478056|gb|ACV58375.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1190 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 99/283 (34%), Gaps = 29/283 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K ++I F+++A ++V T VG NG GK+NI +A+ ++ + R + Sbjct: 1 MYLKQIDILGFKSFADKTQIVLSPGITAIVGPNGSGKSNIADALRWVLGEQSVRNLRGSK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS + ++ + ++ + T R+ R IN R Sbjct: 61 MEDVIFAGSELRKATNLCEVSITLDNTDHHLPVTFEEVTITRRAFRSGESEYWINRQPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ + S +RR + + + R + E Sbjct: 121 LKDIHELFMDTGLGREAYSIIGQGKIEEMLSTRPEDRRGPFEDAAGIVK--FKHRRKEAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R + L + +EAQ+ L IA E ALS I E Sbjct: 179 RKLEETAANLVRV---DDILAELEAQLGPLAEARRIA--ERYQALSDEIEETEIALLVVE 233 Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 I +L + A + E ++L + R+ L Sbjct: 234 IDRLHDRYEQLKRQVAREEAARNEAQERLRLSEEAWKARRQAL 276 >gi|227904214|ref|ZP_04022019.1| chromosome segregation protein Smc [Lactobacillus acidophilus ATCC 4796] gi|227868233|gb|EEJ75654.1| chromosome segregation protein Smc [Lactobacillus acidophilus ATCC 4796] Length = 1189 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 58/159 (36%), Gaps = 23/159 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F+ T VG NG GK+NI EAI ++ S + R + Sbjct: 1 MPLTELVLDGFKSFADKTVIHFNKGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV GS F + + R RS IN+ +R Sbjct: 61 MKDVIFAGSQYRKPMNKAEVTLIFDNKNRELAFETDQVSVTRRILRSGDSEFLINNQQVR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141 + D L S + P+ I S +RR Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158 >gi|213962847|ref|ZP_03391107.1| ATPase [Capnocytophaga sputigena Capno] gi|213954504|gb|EEB65826.1| ATPase [Capnocytophaga sputigena Capno] Length = 352 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 61/392 (15%), Positives = 136/392 (34%), Gaps = 68/392 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ------HTIFVGDNGVGKTNILEAISFLS--PGRGF 56 +KIK + + ++ + + +F + T+ VG+NG GKT++L+AI + R Sbjct: 1 MKIKEITLRNYKRFVEQKTIFFHKDGEINDLTLIVGNNGTGKTSLLQAIVMMIAPLTRDH 60 Query: 57 RRASYAD-------VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDV 108 D + G A ++ E + ++ R D+ + + N Sbjct: 61 FSVEDIDWSGFEYRFIQSGGRMPLKVEATIDFSEEELEKTLLYAKRIDKYGKKIVFPNKN 120 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + + + R + + ++ +++ FE Sbjct: 121 K----------MINVFFDYE-----KKKPIVRGKGGGNLFQFFGHQYAKQLTSFE---ID 162 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGV----KINIARVEMINALSSLIMEYVQKENFPHI 224 +N+L EG + W Q V + +++++ I + + + Sbjct: 163 KNKLF-EGVGNIYW---YTEQRTSYSVNNMFEGEVSQLDAIRSFLANAYSFHIAITEGRR 218 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR------KMDSMSRRTLIGPHRSDLIVDYC 278 L G+FD + + E Y K D + + D + T D ++ Sbjct: 219 TLK-----AGEFDF-YQKISELYGKVFTDRKFVGATPRFDIYEKSTAP-----DFFLNDG 267 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 ++ S GE+ + + + A + I+++DEI HL + A R + Sbjct: 268 KNDYELSEMSAGERAIFPILMDFARYNI------NNSIVIIDEIELHLHAPLQQAFIRAL 321 Query: 339 TDIGS--QIFMTGTDKSVFDSLNETAKFMRIS 368 +G Q +T ++ E + ++++ Sbjct: 322 PKLGHNNQFILTS-HSDYVTTMFEENQIIKLN 352 >gi|198283035|ref|YP_002219356.1| chromosome segregation protein SMC [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247556|gb|ACH83149.1| chromosome segregation protein SMC [Acidithiobacillus ferrooxidans ATCC 53993] Length = 1150 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 60/319 (18%), Positives = 103/319 (32%), Gaps = 56/319 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ + + F+++ S R+ FDA + +G NG GK+N ++A+ ++ S R R + Sbjct: 1 MRLSAIILQGFKSFRESTRIQFDANPVVIIGPNGCGKSNTVDAVRWVLGESSARQLRGGT 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLAD----------ISIKLETRDDRSVRC-LQINDV 108 +DV G S ++ A VE +D I + DR +IN Sbjct: 61 LSDVISNGGGSRPAASVATVELRFDNSDGAAPGAFAGAAEISVRRSLDRKGDGHYRINGA 120 Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLS------MERRRFL 144 R D E RI P R + ERRR Sbjct: 121 RCRRRDVADLFLGTGLGGNAYAIVEQGTIGRIVDARPDDLRAILEEAGGISRYKERRRET 180 Query: 145 DRMVFAIDPRHRRRM--------IDFERLMRGR--NRLLTEGYFDSSWCSSIEAQMAELG 194 + + H +R+ ++RL R + L + +A Sbjct: 181 TQRIAE-TREHLQRLYDIHGEMDGQWQRLQRQAESAQRLRALRVEERQWQWWS--LALRV 237 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTGFLDGKFDQSFCALKEEYAKKL 251 + R + + S L EY ++E L D + + A + E Sbjct: 238 DALEAERRQSLEQRSRLQDEYRREERLLDAVTQSLDQLRAEDRRMQEDIAAAQGELYAVQ 297 Query: 252 FDGRKMDSMSRRTLIGPHR 270 M+ R R Sbjct: 298 ARQSDMEHQLREQQAALQR 316 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + T+ S GE+ + + + A L AP +LDE+ A LD+ + Sbjct: 1037 GKRNATLQQLSGGEKALTAIALVFALFHL-----NPAPFCILDEVDAPLDDANVGRFCHL 1091 Query: 338 VTDIGSQI 345 V + +Q Sbjct: 1092 VQKMAAQT 1099 >gi|323496668|ref|ZP_08101719.1| RecF/RecN/SMC family protein [Vibrio sinaloensis DSM 21326] gi|323318250|gb|EGA71210.1| RecF/RecN/SMC family protein [Vibrio sinaloensis DSM 21326] Length = 542 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 30/44 (68%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 ++++ L++S FR + L L FD + T+ +GDNG GKT+ +A+ Sbjct: 62 KLRLNSLSLSNFRRFDDLCLDFDEKLTVIIGDNGAGKTSFADAM 105 >gi|255994581|ref|ZP_05427716.1| DNA repair protein RecN [Eubacterium saphenum ATCC 49989] gi|255993294|gb|EEU03383.1| DNA repair protein RecN [Eubacterium saphenum ATCC 49989] Length = 545 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 16/195 (8%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +++I + I F A + + F I G+ G GK+ + AI G F + Sbjct: 3 KMEISKIQIKNFATIAEINIKFAKGLNIITGETGAGKSVLATAI-----GAVFNPRANKS 57 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-----SVRCLQINDVVIRVVDELNK 118 + R + + + +G I ++ R SV ++ + ++ + Sbjct: 58 LIRNNTDAATISLTFTDGTNNTDIKRIITKSYSKRFIDDASVSATKLAENYNDILHIHGQ 117 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 L P F + + + + F+ + N LL + Sbjct: 118 FENRDILNPDNHISIIDS------FGENTILPVKNHYNTCYSHFKAAAKELNNLLKKKSE 171 Query: 179 DSSWCSSIEAQMAEL 193 ++ Q+ EL Sbjct: 172 IEQQKDFMQFQLDEL 186 >gi|222528364|ref|YP_002572246.1| SMC domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222455211|gb|ACM59473.1| SMC domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 427 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 57/413 (13%), Positives = 134/413 (32%), Gaps = 80/413 (19%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-------RGF- 56 ++I + IS F+N + + F+ T VG NG GK+N+L+A+ F + + F Sbjct: 1 MEILKITISGFKNIENTTIEFNHPITAIVGPNGYGKSNLLQALEFGNYFIKSDEIEKSFF 60 Query: 57 --RRA---SYADVTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 R + ++ F +TF E + + + + Sbjct: 61 MKRPSFIPINKNMINSEFHYEIEFKTTFVEKEVVVNYGYKFMWPSKDIKPLITAEWLKIK 120 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 ++++R + S +R D+ + + Sbjct: 121 PNEKGKRYSEYIRRT----SDKAFIKPSPKDR---CDKEIK----------------IEN 157 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--QKENFPHIKL 226 N ++ + D ++ IN +EMI + ++ K N P + + Sbjct: 158 NNLVINKLKSDDELF------YHKIVNDINKLNIEMITKVLPEFSFHLIPSKGNVPKLTI 211 Query: 227 SLT---------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS---RRTLIGPHRSD-- 272 T L + + F L + + ++D + G + + Sbjct: 212 EETVLFDILPTVYDLKKNYPEKFEYLMNAFKEIFPSIEELDVAEVKPQNIFKGLLKDEEF 271 Query: 273 ----LIVDYCDKAITIAH----GSTGEQKVV--LVGIFLAHARLISNTTGFAPILLLDEI 322 I+ +K +T + S G +++ L + LA ++ +E+ Sbjct: 272 VDKIYIMRVKEKNLTKSLDILSLSRGTLRILAFLTSLILA-------DIKGYLLIGFEEL 324 Query: 323 SAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 + L +++++ +I +T + L+ ++ + N + + Sbjct: 325 EDSIHPKLLQKLLMVLSNMSDNCKIIITSHSPYLIQFLDIDNIYLAVPNDKGI 377 >gi|149186058|ref|ZP_01864372.1| chromosome segregation protein [Erythrobacter sp. SD-21] gi|148830089|gb|EDL48526.1| chromosome segregation protein [Erythrobacter sp. SD-21] Length = 1140 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + IK L +S F+++ L + T VG NG GK+N+LEAI ++ + R Sbjct: 1 MLIKQLRLSGFKSFVEPSTLRIEPGLTGVVGPNGCGKSNLLEAIRWVMGENSPKSMRSGG 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVD 114 DV G+ S F E +G +++ R +R ++N +R D Sbjct: 61 MEDVIFAGTASRPPRDFAEVVLSAEDDDGD---ELEVVRRIERGAGSAYRVNGKDVRAKD 117 >gi|223932806|ref|ZP_03624803.1| chromosome segregation protein SMC [Streptococcus suis 89/1591] gi|302023943|ref|ZP_07249154.1| chromosome segregation protein SMC [Streptococcus suis 05HAS68] gi|223898515|gb|EEF64879.1| chromosome segregation protein SMC [Streptococcus suis 89/1591] Length = 1177 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 108/281 (38%), Gaps = 31/281 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLA---DISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S + S ++ G IK+E RS I+ +R Sbjct: 61 MPDVIFSGTESRKALNYASVVVTLDNSTGFIANKQKEIKVERHIYRSGDSEYLIDGQKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFEEAAGVLK--YKTRKKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-MINALSSLIMEYV 216 + L Y + +E AQ A+ ++++ R E ++ L + ++ Sbjct: 179 SKLAQAQGNLDRLDDIIYELDNQVKPLEKQAQTAKKFLELDGQRKELYLDVLVAQLLLGK 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 +K + +L + + L++E + L + R Sbjct: 239 EKLSEKEAELESVKTELTSYYKQRSELEQE-NQNLKEKRHR 278 >gi|161507713|ref|YP_001577670.1| chromosome segregation protein Smc [Lactobacillus helveticus DPC 4571] gi|160348702|gb|ABX27376.1| Chromosome segregation protein Smc [Lactobacillus helveticus DPC 4571] Length = 1189 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 21/158 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F+ T VG NG GK+NI EAI ++ + + R + Sbjct: 1 MPLTELVLDGFKSFADRTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGEASAKSLRGTN 60 Query: 61 YADVTRIGSP---SFFSTFARVEGMEGLADI-----SIKLETRDDRSVRC-LQINDVVIR 111 DV GS S + ++ + + + RS IN +R Sbjct: 61 MKDVIFAGSQYRKSLNKAEVTLIFDNQKRELAFDADEVSITRKILRSGDSEFLINGQQVR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERR 141 + D L S+ D+I + +RR Sbjct: 121 MRDVRTLFLDSGISQNSLAIISQGRVDQILNSRPEQRR 158 >gi|307945037|ref|ZP_07660373.1| conserved hypothetical protein [Roseibium sp. TrichSKD4] gi|307770910|gb|EFO30135.1| conserved hypothetical protein [Roseibium sp. TrichSKD4] Length = 426 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 81/268 (30%), Gaps = 34/268 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RR 58 +KI L+ F+ ++ + D G N GK++IL+AI G+ R Sbjct: 1 MKIVSLSAENFKRLRAVSISPDGNLIELTGGNEQGKSSILDAIWAAICGKSAAPALPIRT 60 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 + ++ S T + +G S+ +E + R++D+L Sbjct: 61 GEEVAIIKLDLGSLKITRKFINKTDGTTTTSLVVENEEG------HRQSPPQRILDDLTN 114 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP---RHRRRMIDFERLMRGRNRLLTE 175 L L + S R D D D R + L Sbjct: 115 TLSFDPLEFTRLDPKKQSSFLRSLVPDFNFEEADRQIQELMEERRDTNRELAQAKARLEA 174 Query: 176 -GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 D + I+ + +L + + + +LS LD Sbjct: 175 CSVPDDAPNDPID-----------------VASLIESMEKAAASNDMRQQQLSRQRELDQ 217 Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSR 262 + Q+ A E Y K++ ++ Sbjct: 218 Q-KQNAEASIENYRKEIAAAQEQIEKLG 244 >gi|239626497|ref|ZP_04669528.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239516643|gb|EEQ56509.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 512 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 +KI + I F+ SL + A+ I G NG+GKT++LE I G+ Sbjct: 8 MKISNIKIMNFKGIESLEVKP-ARINILSGPNGMGKTSMLEGIRCAITGK 56 >gi|58337572|ref|YP_194157.1| chromosome segregation protein Smc [Lactobacillus acidophilus NCFM] gi|58254889|gb|AAV43126.1| chromosome segregation protein Smc [Lactobacillus acidophilus NCFM] Length = 1189 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 58/159 (36%), Gaps = 23/159 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F+ T VG NG GK+NI EAI ++ S + R + Sbjct: 1 MPLTELVLDGFKSFADKTVIHFNKGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV GS F + + R RS IN+ +R Sbjct: 61 MKDVIFAGSQYRKPMNKAEVTLIFDNKNRELAFETDQVSVTRRILRSGDSEFLINNQQVR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141 + D L S + P+ I S +RR Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158 >gi|325959297|ref|YP_004290763.1| SMC domain-containing protein [Methanobacterium sp. AL-21] gi|325330729|gb|ADZ09791.1| SMC domain protein [Methanobacterium sp. AL-21] Length = 815 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 11/104 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR----RAS 60 +K+ L I+ FR +L++ ++ + +G NG GK+ +++A+ FL G+ R Sbjct: 1 MKVLELEITNFRGIKNLKINPAGKNFMIIGPNGSGKSAVVDAVDFLLTGQISRMTGKGTK 60 Query: 61 YADVTRIG-------SPSFFSTFARVEGMEGLADISIKLETRDD 97 ++ + G + ++ G+E +I L++ ++ Sbjct: 61 GINLKKHGPHIDHSPQDAKVRAVVQIHGVEEPIEIQRTLDSPNN 104 >gi|116330711|ref|YP_800429.1| chromosome segregation ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124400|gb|ABJ75671.1| Chromosome segregation ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 924 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K LNI F+ +A ++ D T VG NG GK+NI++A+ ++ +G R Sbjct: 1 MYLKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGEK 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS + + +A V + + IK++ + R L ++ Sbjct: 61 MDDVIFHGSEARKPAGYAEVSVVFDNSSRLIKMDYPSVKMTRRLYLDG 108 >gi|238613454|ref|XP_002398446.1| hypothetical protein MPER_00958 [Moniliophthora perniciosa FA553] gi|215474997|gb|EEB99376.1| hypothetical protein MPER_00958 [Moniliophthora perniciosa FA553] Length = 130 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61 + + + + +F++Y + T +G NG GK+N+++AISF+ + R + Sbjct: 1 MPLVRIEVCDFKSYRGHQTIGPFKNFTSVIGPNGAGKSNLMDAISFVLGVKSAQLRSSQL 60 Query: 62 ADVTRIG 68 D+ G Sbjct: 61 KDLVYRG 67 >gi|116328632|ref|YP_798352.1| chromosome segregation ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121376|gb|ABJ79419.1| Chromosome segregation ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 924 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K LNI F+ +A ++ D T VG NG GK+NI++A+ ++ +G R Sbjct: 1 MYLKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGEK 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS + + +A V + + IK++ + R L ++ Sbjct: 61 MDDVIFHGSEARKPAGYAEVSVVFDNSSRLIKMDYPSVKMTRRLYLDG 108 >gi|147898636|ref|NP_001081372.1| structural maintenance of chromosomes protein 2 [Xenopus laevis] gi|1722856|sp|P50533|SMC2_XENLA RecName: Full=Structural maintenance of chromosomes protein 2; Short=SMC protein 2; Short=SMC-2; AltName: Full=Chromosome assembly protein XCAP-E; AltName: Full=Chromosome-associated protein E gi|563814|gb|AAA64680.1| XCAP-E [Xenopus laevis] Length = 1203 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 28/262 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + I F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHVKSIIIDGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKATVSITFDNYDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM + + Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + E +E ++ K+ R + IM ++ + + Sbjct: 178 KIAAQKTIEKKEAKLKEIQT-ILEEEITPTIHKLKEERSSYLE--YQKIMREIEHLSRLY 234 Query: 224 IKLSLTGFLDGKFDQSFCALKE 245 + + K +S LKE Sbjct: 235 VAYQFVCAEETKV-RSAEELKE 255 >gi|326693824|ref|ZP_08230829.1| DNA repair protein RecN [Leuconostoc argentinum KCTC 3773] Length = 566 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 101/299 (33%), Gaps = 52/299 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I F + L F+A ++ G+ G GK+ I++A+ L+ GR + +++ R Sbjct: 2 LENLIIENFAIIEKVNLHFEAGMSVLTGETGAGKSIIIDALLMLTGGR-----ASSEMIR 56 Query: 67 IGSP-----SFFSTFARVEGMEGLADISIKLETR--------DDRSVRCLQINDVVI--R 111 GSP + F + + LA+I + +E + +++N VV+ + Sbjct: 57 HGSPKAVLQAVFRLPENDKLLAHLAEIGVPIEDGELIIYRELNANGRSLIRLNGVVVNLK 116 Query: 112 VVDELNKHL---------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 + + +L + V + G E+ + + R Sbjct: 117 TLARVGHYLVDIQGQNDTQQLLNVDEHLILLDGFGGEKLQATKAAYQQVFQEFRAVTQRL 176 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK------INIARVEMIN--ALSSLIME 214 ++ + + ++AE ++ + AR ++IN ++ + Sbjct: 177 RKI----QTSQQDMTQRLDLLQFQQQELAEADLQPNEEEFLLDARGKLINHKKIADRLQN 232 Query: 215 YVQKENFPH-----------IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 N +L D + + + + Y GR +D Sbjct: 233 AQLALNGEQGGAVDMLAQAMHELQEIAEFDAAYAELATTIADSYYTAQEVGRDVDEQIG 291 >gi|229013392|ref|ZP_04170529.1| DNA repair protein recN [Bacillus mycoides DSM 2048] gi|229134996|ref|ZP_04263802.1| DNA repair protein recN [Bacillus cereus BDRD-ST196] gi|228648498|gb|EEL04527.1| DNA repair protein recN [Bacillus cereus BDRD-ST196] gi|228747804|gb|EEL97670.1| DNA repair protein recN [Bacillus mycoides DSM 2048] Length = 583 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 104/277 (37%), Gaps = 51/277 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110 G+ A+ E ++ + + + RD ++N ++ Sbjct: 61 YGTEKAEIEGLFYVEDDKHPCIAKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164 ++ E+ K L + + ER F+ +R+V + ++ D+E+ Sbjct: 121 SILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGNRIVKQLG-IYQNVYTDYEK 176 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 L + L S E QMA R+++I I + K + Sbjct: 177 LKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKMD-EEY 216 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 +L+ F++ + AL + Y DG+ +D + Sbjct: 217 ELTEERLKISNFEKIYKALGDAYRSLSGDGQGLDHVR 253 >gi|323126810|gb|ADX24107.1| Putative chromosome segregation SMC [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1181 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 106/287 (36%), Gaps = 45/287 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEMQGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ ++ + A I++E R+ I+ +R Sbjct: 61 MPDVIFAGTENRSPLNYAQVAVVLDNSDHFIKEAKEVIRIERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L ++ ++ IF+ ERR + ++ ++ Sbjct: 121 LRDIHDLFMDTGLGRNSFSIISQGRVEEIFNSKPEERRAIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVK---------INIARVEM-INALS 209 + L + + ++ Q+ L + ++ +R ++ ++ L Sbjct: 172 TRKKETQSKLNQTQDNLDRLDDIIYELDNQLVPLEKQAKVAQKFLDLDASRKQLQLDILV 231 Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + I K++ L + + +++ +Y ++L R+ Sbjct: 232 TDIALDQAKQSDDRAALESVKQDLATYYANRQSMEADY-QQLKQKRQ 277 >gi|172038210|ref|YP_001804711.1| chromosome segregation protein SMC [Cyanothece sp. ATCC 51142] gi|171699664|gb|ACB52645.1| chromosome segregation protein SMC [Cyanothece sp. ATCC 51142] Length = 1221 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + +K + +S F+++ + + F T+ G NG GK+NIL+A+ F L+ +G R Sbjct: 2 VHVKRIELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61 Query: 61 YADVTRIG 68 D+ Sbjct: 62 LPDLINHN 69 >gi|116333589|ref|YP_795116.1| chromosome segregation ATPase [Lactobacillus brevis ATCC 367] gi|116098936|gb|ABJ64085.1| condensin subunit Smc [Lactobacillus brevis ATCC 367] Length = 1183 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 +++K L IS F+++A + F T VG NG GK+NI EA+ L + R + Sbjct: 1 MRLKTLEISGFKSFADKTRIDFLPGMTGIVGPNGSGKSNISEAVRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSPS 71 DV GS Sbjct: 61 MPDVIFAGSAD 71 >gi|319946573|ref|ZP_08020807.1| SMC family domain protein [Streptococcus australis ATCC 700641] gi|319746621|gb|EFV98880.1| SMC family domain protein [Streptococcus australis ATCC 700641] Length = 1181 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++FD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEIQGFKSFADKTRVIFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYACVTVVLDNRDAFIKHAAKEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ ERR + Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFE 162 >gi|295697487|ref|YP_003590725.1| AAA ATPase [Bacillus tusciae DSM 2912] gi|295413089|gb|ADG07581.1| AAA ATPase [Bacillus tusciae DSM 2912] Length = 340 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 15/183 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I L +F + L + +FVG NG GKT++++A + + Sbjct: 1 MTITKLRFDKFTVFDKLDIDLSPGMNVFVGANGTGKTHLMKAAYAACDISKTKGNFAEKL 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV------IRVVDELNK 118 R+ PS V+ +G A ++++ R + +R N + E Sbjct: 61 IRVYMPSGHILGRLVKRQKGSARCAVEVH-RGSKKLRISFSNHSKSPDSATVNGAKEWMA 119 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDFERLMRG-----RNRL 172 S +P + + + R + R + + + + + +RG R L Sbjct: 120 EPIESVYIP-VKEMLANAPGFRSLYAQREI-HFEEIYADILDRAYRPALRGPIDGVRKNL 177 Query: 173 LTE 175 L Sbjct: 178 LKN 180 >gi|256419156|ref|YP_003119809.1| SMC domain protein [Chitinophaga pinensis DSM 2588] gi|256034064|gb|ACU57608.1| SMC domain protein [Chitinophaga pinensis DSM 2588] Length = 543 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 49/356 (13%), Positives = 116/356 (32%), Gaps = 76/356 (21%) Query: 5 IKIKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRR 58 ++I L + F+ ++ L + ++ + +G NG GK+++ +A FL + GR Sbjct: 1 MRITKLKLRNFKRFSDLTIDQIPTSSKLVLLIGANGSGKSSVFDAFDFLERSAAGRYHFN 60 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELN 117 + + V + + I + R +R I +R+V ++ Sbjct: 61 SYDPTTKLYYGKNNVVPDVEVALVYSQGAMLIGNKLLRPITELRNKFIGRSSVRIVPRIS 120 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177 + + + F+D D R + + ++ + L E Sbjct: 121 RE--------GSSEAIAHNADAPNTFIDP-----DARFNNDLAQY---IQQIDNALREPV 164 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 F ++ +I + I L+ ++ + + I+L+ Sbjct: 165 FSGRSADTL---------QIFK---DFIQPLNQSLINILGGDELTTIQLA---------- 202 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297 E+ + LI D I S GE++++++ Sbjct: 203 --------EFKNA---------------TTQESARLIFKKGDSKINYDLLSHGEKQIIIL 239 Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTG 349 + ++ I+ +DE+ HL+ + L + D+ +Q++ Sbjct: 240 LLNF----IVRKEQYKDAIIYIDEMDCHLNTALQARLLAEIVDVWIPEDAQLWTAS 291 >gi|198419101|ref|XP_002119958.1| PREDICTED: similar to XCAP-E [Ciona intestinalis] Length = 1202 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 20/145 (13%) Query: 5 IKIKFLNISEFRNYASL-RLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL+AI FL + R Sbjct: 1 MYIKSVTVDGFKSYAQQTDIKGFDPLFNAITGLNGSGKSNILDAICFLLGITNLSQVRAT 60 Query: 60 SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + GME +I+I + + L IN Sbjct: 61 NLQDLVYKNGQAGINKATVCITFDNSNKEQSPMGMEAHNEITITRQIVIGGRNKYL-ING 119 Query: 108 VVIR--VVDELNKHLRISWLVPSMD 130 V + V +L + + ++ P Sbjct: 120 VNAQNSRVSDLFRSVGLNVNNPHFL 144 >gi|121594800|ref|YP_986696.1| hypothetical protein Ajs_2459 [Acidovorax sp. JS42] gi|120606880|gb|ABM42620.1| conserved hypothetical protein [Acidovorax sp. JS42] Length = 606 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 67/396 (16%), Positives = 124/396 (31%), Gaps = 52/396 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63 +K+ L IS FR S+ L+FD HT+ VG N VGK+ + EA+ L P R R + Sbjct: 1 MKVVRLTISNFRGIKSVELLFD-GHTLMVGSNNVGKSTLCEALDLVLGPDRLNRFPPVDE 59 Query: 64 VTRIGSPSFFSTF----------ARVEGMEGLADISIKLETRDD------RSVRCLQIND 107 + R+E + I + + R L + Sbjct: 60 FDFYNAEYLAPATEEGAEQAPIPLRIEAVLIEPGAEIGAKCGGNIEFWHVAEQRLLGPGE 119 Query: 108 VVIRVVDELNKHLRISWL---VPSMDRI-----FSGLSMERRRFLDRMVFAIDPRHRRRM 159 + LRI + P D FS L ++ I Sbjct: 120 ADAANPPDAVPCLRIETIGQYNPEEDEFEARTYFSHSPDAPPGELTKVPKGIKRLFGFL- 178 Query: 160 IDFERLMR--GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217 + R +R R L G ++ + GV+ ++ + I L L +E Sbjct: 179 --YLRALRTGSRALSLERGSL-------LDIILRTKGVRTSLW-EKTIERLRGLDIEADA 228 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 E P ++ +S + + +L + + + L + Sbjct: 229 TEIAPVLRSVERRLARYIALESPGNATKLHVSEL----TREHLRKTMTF-----FLALSA 279 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + H TG + + LA I++ I ++E + + + + Sbjct: 280 DQGHVPFPHAGTG----TINTLVLALLSFIADLKPDTVIFAMEEPEIAVPPHTQRRIAQY 335 Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373 + +Q F+T V + + + N + Sbjct: 336 LLTKTTQAFVTSHSPFVIEKFEPSKTLLLARNAGVV 371 >gi|45357895|ref|NP_987452.1| hypothetical protein MMP0332 [Methanococcus maripaludis S2] gi|45047455|emb|CAF29888.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 626 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 25/43 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 + + ++I +R+ L L FD + VG N GK+NI++AI Sbjct: 1 MYLSKVHIENYRSIKELDLTFDQGKNVIVGKNNAGKSNIIKAI 43 >gi|301048685|ref|ZP_07195694.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|300299431|gb|EFJ55816.1| conserved hypothetical protein [Escherichia coli MS 185-1] Length = 633 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 28/46 (60%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 +++I +++ F+++ ++ +V + I +G+N GK+ + EAI Sbjct: 2 KLRISKISLKNFKSFKNISIVPNPDFNIIIGENSAGKSTVFEAIHL 47 >gi|229061864|ref|ZP_04199194.1| DNA repair protein recN [Bacillus cereus AH603] gi|228717425|gb|EEL69093.1| DNA repair protein recN [Bacillus cereus AH603] Length = 583 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 105/277 (37%), Gaps = 51/277 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110 G+ A+ E ++ + S+ + RD ++N ++ Sbjct: 61 YGTEKAEIEGLFYVEDDKHPCIAKAEELDIEIEDSMIILKRDIAANGKSVCRVNGKLVTL 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164 ++ E+ K L + + ER F+ +R+V + ++ D+E+ Sbjct: 121 SILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGNRIVKQLG-IYQNVYTDYEK 176 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 L + L S E QMA R+++I I + K + Sbjct: 177 LKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKMD-EEY 216 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 +L+ F++ + AL + Y DG+ +D + Sbjct: 217 ELTEERLKISNFEKIYKALGDAYRSLSGDGQGLDHVR 253 >gi|15806490|ref|NP_295200.1| DNA repair protein [Deinococcus radiodurans R1] gi|7388063|sp|Q9WXF2|RECN_DEIRA RecName: Full=DNA repair protein recN; AltName: Full=Recombination protein N gi|6459236|gb|AAF11043.1|AE001992_3 DNA repair protein [Deinococcus radiodurans R1] Length = 564 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 88/284 (30%), Gaps = 38/284 (13%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L I L L F G+ G GK+ I++A+ L GR + D+ Sbjct: 33 RLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGR-----ANHDLI 87 Query: 66 RIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVR-------CLQINDVVIRVVDELN 117 R G T +G E AD S +L + + R ++ + + Sbjct: 88 RSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHW 147 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL----- 172 +H +S L P+ R + + A R+ + R R R Sbjct: 148 QHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQRERARQIDLLA 207 Query: 173 -----LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 ++E D + +++ L + I ++ +E + + L Sbjct: 208 FQVQEISEVSPDPGEEEGLNTELSRLSN------LHTIAQAAAGGVELLSDGDLNAAGLI 261 Query: 228 LTGFL----DGKFDQSFCALKEEYAKKLF-----DGRKMDSMSR 262 K+D++ L+ E L G D Sbjct: 262 GEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEG 305 >gi|163941932|ref|YP_001646816.1| DNA repair protein RecN [Bacillus weihenstephanensis KBAB4] gi|163864129|gb|ABY45188.1| DNA repair protein RecN [Bacillus weihenstephanensis KBAB4] Length = 579 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 104/277 (37%), Gaps = 51/277 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110 G+ A+ E ++ + + + RD ++N ++ Sbjct: 57 YGTEKAEIEGLFYVEDDKHPCIAKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164 ++ E+ K L + + ER F+ +R+V + ++ D+E+ Sbjct: 117 SILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGNRIVKQLG-IYQNVYTDYEK 172 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 L + L S E QMA R+++I I + K + Sbjct: 173 LKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKMD-EEY 212 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 +L+ F++ + AL + Y DG+ +D + Sbjct: 213 ELTEERLKISNFEKIYKALGDAYRSLSGDGQGLDHVR 249 >gi|332367147|gb|EGJ44883.1| cell division protein Smc [Streptococcus sanguinis SK1059] Length = 1178 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 92/252 (36%), Gaps = 32/252 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ S ++ + I++E RS +I+ +R Sbjct: 61 MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + E Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKIN----IARVEMINALSSLIMEY 215 + L Y S +E Q AE + R ++ L + + Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQ-AETAKRFLSLDGQRRELYLDVLVAQLTAN 237 Query: 216 VQKENFPHIKLS 227 ++ L+ Sbjct: 238 KERLTQAEEDLT 249 Score = 38.0 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279 LS L ++ +KE + R+ ++ R + G +DLI+ D Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066 Query: 280 ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 K ++ S GE+ + + + + R+ P ++LDE+ A LDE Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121 Query: 331 RNALFRIVT--DIGSQIFM 347 + D SQ + Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140 >gi|323187247|gb|EFZ72559.1| recF/RecN/SMC N terminal domain protein [Escherichia coli RN587/1] Length = 550 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 72/402 (17%), Positives = 138/402 (34%), Gaps = 76/402 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-----SFLSP-----GRGF 56 ++ L + +FR ++ L + F+ T+ +G+NG GKT+IL AI F++ G G Sbjct: 66 LRRLTLKDFRRFSLLEIKFEEDLTVIIGNNGKGKTSILYAIAKTLSWFVANILKEGGSGQ 125 Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + D+ + + +GL + I+L + D ++ +L Sbjct: 126 RLSELTDIKNDAENRYADVSSTFFFGKGLKSVPIRLSRSALGTAER---RDSEVKPARDL 182 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 R+ + ++ FA+ R F R + N E Sbjct: 183 ADIWRVI---------------NEAKTINLPTFALYNV--ERSQPFNRNTKD-NAGRREE 224 Query: 177 YFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 FD ++ ++ + I+ +SS I E Q+ N L +DG Sbjct: 225 RFD-AYSQALGGAGRFDHFVEWYIYLHKRTISDISSSIKELEQQVN------DLQRSVDG 277 Query: 235 KFDQSFCALKEEYAKKLFDGRKM-----------DSMSRRTL-----------------I 266 S +L E+ KL + + +S+ + + + Sbjct: 278 GM-VSVKSLLEQMKLKLSEASERNDAAVSSKMVTESVQKSIVEKSICSVVPSISKIWVEM 336 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-----HARLISNTTGFAPILLLDE 321 + V +TI S G++ + + LA L+ N I+L+DE Sbjct: 337 TTGSDLVKVTNDGHDVTIDQLSDGQRVFLSLVADLARRMVMLNPLLENPLEGRGIVLIDE 396 Query: 322 ISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNET 361 I HL + + + + Q +T V ++ + Sbjct: 397 IELHLHPKWQQEVILNLRSVFPNIQFIITTHSPIVLSTIEKR 438 >gi|21674524|ref|NP_662589.1| Smc family protein [Chlorobium tepidum TLS] gi|21647717|gb|AAM72931.1| SMC family protein [Chlorobium tepidum TLS] Length = 1183 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 97/273 (35%), Gaps = 37/273 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60 + + + + F+++A +R+ FD T VG NG GKTN+++AI L + R Sbjct: 1 MYLSKIELFGFKSFAHRVRIHFDKGLTAIVGPNGCGKTNVVDAIRWVLGEQKSMLLRSPK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 ++ G+ SF +E + T R R +N V R Sbjct: 61 MENIIFNGTKRLKPLSFTEVSITIENTRNILPTEYTEVTVTRRLYRNGDSDYLLNMVPCR 120 Query: 112 VVDELNKHLRISWLVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L+ + I S S ER + + + ++ Sbjct: 121 LKDILDLFADTGMGSDAYSVIELKMIEEIISNKSEERLKLFEE---------AAGITRYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + R L D + ++ +AE+ K+ R+++ + + E +E Sbjct: 172 QRRKQTFRQLESASRD---LARVDDVLAEVEKKVRNLRLQV--RKAERLKEI--REELRT 224 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + L+L+ + Q L + A + + Sbjct: 225 LDLTLSAISMDEHLQKLRPLLDSIAAEERQCHE 257 >gi|319651485|ref|ZP_08005613.1| DNA repair protein [Bacillus sp. 2_A_57_CT2] gi|317396800|gb|EFV77510.1| DNA repair protein [Bacillus sp. 2_A_57_CT2] Length = 560 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 82/246 (33%), Gaps = 28/246 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F +L + F+ T+ G+ G GK+ I++AI L+ GRG A+ R Sbjct: 2 LNEISIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARV-------------EGMEGLADISIKLETRDDRSVRCL-QINDV--VI 110 G + E + D I L ++ + + ++N I Sbjct: 57 HGEDKAEIEGLFILDDLKHPCYKRSAEFGIEIEDGMIVLRRDISKTGKSVCRVNGKLVTI 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRG 168 V+ E+ L + +F + A ++ +E ++ Sbjct: 117 SVLREIGSSLIDIHGQHEHQELMDETFHLPLLDQFGGSKLSAALTEYQDIYRLYENTLKK 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 L + I+ Q+ E+ +N LI E + NF I SL Sbjct: 177 LKNLSENEQQMAHRLDLIQFQLDEIQSAQLK-----LNEDEDLIEEKRKLSNFERIFDSL 231 Query: 229 TGFLDG 234 + Sbjct: 232 QSGYNA 237 >gi|91202833|emb|CAJ72472.1| similar to structural maintenance of chromosome (smc) seggregation ATPase protein [Candidatus Kuenenia stuttgartiensis] Length = 1207 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 +K+K L + F+++A +VF+ + VG NG GK+NI++A+ L + R Sbjct: 1 MKLKKLELFGFKSFAEKTEVVFEDGINVIVGPNGCGKSNIVDAVKWVLGEQSVKSLRGNE 60 Query: 61 YADVTRIGSP 70 +DV G+ Sbjct: 61 MSDVIFNGTE 70 >gi|218960817|ref|YP_001740592.1| hypothetical protein CLOAM0487 [Candidatus Cloacamonas acidaminovorans] gi|167729474|emb|CAO80385.1| conserved hypothetical protein [Candidatus Cloacamonas acidaminovorans] Length = 629 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 8/87 (9%) Query: 5 IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + + L I+ FR Y L ++F+ + +G+N GK+ I++A+ ++ + + Sbjct: 1 MYLLKLKITNFRKYGDPGLEVIFNQGLNVLIGENESGKSTIIDAVRYILNTQSY------ 54 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADIS 89 + R+ F A E + Sbjct: 55 EYIRVQETDFHCNQAGNRAEELKIECE 81 >gi|126458979|ref|YP_001055257.1| SMC domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126248700|gb|ABO07791.1| SMC domain protein [Pyrobaculum calidifontis JCM 11548] Length = 700 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 21/211 (9%) Query: 155 HRRRMIDFERLMRG--RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 +R + ++ R L E ++A ++ AR E + L + Sbjct: 501 YRELRAAYVEYLKAHSRAEELRRE------LEKAERELAGAAAELEKARAE-LEKLDKAL 553 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH-RS 271 +I+ L A+ EE R ++ L+ R Sbjct: 554 AAAK------NIRAVLGEVKPLARQILLKAINEELNAVFLRLRHKEAFKSVQLVEAGGRY 607 Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 + + + I + S GEQ ++ + + +A AR + G AP ++LDE + HLDE+ R Sbjct: 608 AVRIHTPNGHIEHSLLSLGEQNLLALSLRVALARAL---IGTAPFMMLDEPTEHLDEEHR 664 Query: 332 NALFRIVTDIGSQI--FMTGTDKSVFDSLNE 360 + +V D+ S + + + F+ + + Sbjct: 665 RRIVELVRDLTSVVPTVIVTSHLGEFEEVAD 695 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 IK L + F+ +A F G NG GKT+++EA++ G Sbjct: 2 IKRLEVVNFKAHARAVFKFGEGVNFVYGPNGSGKTSLMEAVAVALFG 48 >gi|49481897|gb|AAT66660.1| DNA repair and genetic recombination protein [Geobacillus lituanicus] Length = 573 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LTELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + R Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L S E QMA R++++ +E E + Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|260889921|ref|ZP_05901184.1| cell division protein Smc [Leptotrichia hofstadii F0254] gi|260860527|gb|EEX75027.1| cell division protein Smc [Leptotrichia hofstadii F0254] Length = 183 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 + +K L ++ F+++A+ + FD T VG NG GK+NIL+AI ++ + + R Sbjct: 1 MYLKALELTGFKSFANRTVVEFDNGITSIVGPNGSGKSNILDAILWVLGEQSYKNIRAKE 60 Query: 61 YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 +D+ G S ++ + D+ +K+ R IN+ R Sbjct: 61 SSDIIFSGGKNKKPKSMAEVSLIIDNGDRYLDVDFSEVKITRRIFKTGENEYLINNKKSR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|222475723|ref|YP_002564244.1| SMC domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222454094|gb|ACM58358.1| SMC domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 926 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 100/305 (32%), Gaps = 49/305 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYA 62 +K K L + R+Y + + F+ + G NG GK+ IL+ + ++ + Sbjct: 1 MKFKTLILENIRSYENGHIDFEDGENLLFGLNGAGKSTILQGVFGGLFQTKMKYQVGNDF 60 Query: 63 ---DVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN- 117 D+ R + G E + I+ DD V + ++ + Sbjct: 61 DLPDLVRTQADEGRIELVFEAGGAEYTVEWVIQKSYDDDDEVNGAKTKQGYPKLSSDALS 120 Query: 118 -----------KHLRISWLVPSMD------------RIFSGLSMERRRFLDRMVFA---- 150 + R+ + R+ + +RR+ LD ++ Sbjct: 121 EDVSSLGDVQTEIQRVVGMDAESFVNSVYVQQGDITRLIHASTEDRRKILDGLLGLNRLD 180 Query: 151 -IDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206 R ++++ R N L + D I++Q+ + KI+ + + I+ Sbjct: 181 EYVDRMEDARREYKKAKRDSNSRLDETKKRLQDLPAEDEIQSQINKTDKKISDIKGD-ID 239 Query: 207 ALSSLI----------MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 L S I E + + + ++L T + KEE ++ RK Sbjct: 240 DLESKIDGLEDERETKTETLDRIDDLQVELDETRDKYEDAESDHETYKEELQEEKEAQRK 299 Query: 257 MDSMS 261 + Sbjct: 300 AEDAR 304 >gi|116492610|ref|YP_804345.1| condensin subunit Smc [Pediococcus pentosaceus ATCC 25745] gi|116102760|gb|ABJ67903.1| condensin subunit Smc [Pediococcus pentosaceus ATCC 25745] Length = 1176 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 27/165 (16%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K++ + IS F+++A + ++ F T VG NG GK+NI+EAI ++ + + R Sbjct: 1 MKLRTIEISGFKSFADNTKIEFKDGITGIVGPNGSGKSNIIEAIRWVMGETSAKSLRGGK 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 DV G+ F ++ ++ IS +L + ++N Sbjct: 61 MPDVIFSGTEKRKPLSRASVTIIFDNSDHFLDSKFDEVMISRRLFRNGESQ---YELNRQ 117 Query: 109 VIRVVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 R+ D LN + ++ IF+ +RR ++ Sbjct: 118 ECRLKDILNLFIDTGLGRESFSVISQGRVESIFNSKPEDRRAIIE 162 >gi|329575675|gb|EGG57202.1| RecF/RecN/SMC protein [Enterococcus faecalis TX1467] Length = 287 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNNDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 >gi|320583806|gb|EFW98019.1| putative nuclear condensin complex SMC ATPase [Pichia angusta DL-1] Length = 1171 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L + F++YA + +D Q G NG GK+NIL+AI F+ R A Sbjct: 1 MKVEELVLDGFKSYAVRTVISSWDPQFNAITGLNGSGKSNILDAICFVLGISSMSTVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S D+ + G + G E + ISI + + + L IN Sbjct: 61 SLQDLIYKRGQAGVTKASVTITFDNSDKSKSPIGFEQYSKISISRQVLLGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 ++ LN + + + + + Sbjct: 120 HKVQQSQILNLLQSVQLNINNPNFLIMQG 148 >gi|330971054|gb|EGH71120.1| hypothetical protein PSYAR_11199 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 576 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 +++ L I FR+ L +G GK++IL+AI R Sbjct: 3 RVRKLEIQNFRSIRLLTWTPSPGINCLIGPGDSGKSSILDAIDMCLGAR 51 >gi|291295935|ref|YP_003507333.1| SMC domain-containing protein [Meiothermus ruber DSM 1279] gi|290470894|gb|ADD28313.1| SMC domain protein [Meiothermus ruber DSM 1279] Length = 1074 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY 61 +KI+ L + F+++ L F VG NG GK+N++EA+ ++ + + R Sbjct: 1 MKIERLFLQGFKSFGERTSLEFGPGVYGIVGPNGSGKSNLVEALRWVVGARAKELRGDEA 60 Query: 62 ADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR 101 + GS F + G +S +LE +R Sbjct: 61 QALLFHGSDGRPPLGFAEVGLELGGNGKRISLSRRLERDGSSEIR 105 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 6/155 (3%) Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKL 251 L + E I L + E +L + + Q + KE++A+ Sbjct: 884 LAEQEYALLSEDIARLEVALQESEAAVRKLEAELHQVASAYQERMQQVYGVFKEKFAQYA 943 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKA-ITIAHGSTGEQKVVLVGIFLAHARLISNT 310 + R+ G +LI+ K + + S GE+ + + A + + + Sbjct: 944 GALLDAEVELERSTQGL---ELILKPAGKRTVNLNLLSMGERTMGALAFLFALSEVGEES 1000 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 +G PI +LDE+ A LDE R + +Q Sbjct: 1001 SG-LPIAVLDEVDAPLDEANIQRFCRFLQHFKNQT 1034 >gi|328945555|gb|EGG39706.1| DNA repair protein RecN [Streptococcus sanguinis SK1087] Length = 552 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRS-----TTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P +G E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMRGR 169 + + D+ LD A + R++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGSADFLNLKGRYQETFDRYRSLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L + +E QMAE+ ++ R ++N Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221 >gi|323705468|ref|ZP_08117043.1| chromosome segregation protein SMC [Thermoanaerobacterium xylanolyticum LX-11] gi|323535370|gb|EGB25146.1| chromosome segregation protein SMC [Thermoanaerobacterium xylanolyticum LX-11] Length = 1182 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60 + +K L+I F+++A + L F+ T VG NG GK+NI +A+ + + R Sbjct: 1 MFLKKLDIIGFKSFADRVVLNFEKGITAIVGPNGSGKSNISDAVRLVLGEQSIKSLRGNK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV +G+ SF ++ + + + + + + RS IN R Sbjct: 61 LEDVIFVGTENRKPLSFAEVTLTLDNSDHMLPLDFTEVVITRKIFRSGESEFYINKTQCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D + +D I +RR+ + Sbjct: 121 LKDVFELFMDTGMGRDGYSIIGQGKIDEILLSRPEDRRQIFE 162 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 29/211 (13%) Query: 157 RRMIDFE-RLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214 + D+E + L+ E S I A + ELG+ A E N Sbjct: 946 KLWEDYEITFNNAKANLIKENILTLRQQLSKINASIKELGIVNLNAIEEYKNLKERYDFL 1005 Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274 +Q ++ K SL +D K+ + L + + ++ + L G R++LI Sbjct: 1006 KMQYDDLVEAKNSLNSIIDDANKIIKTKFKDNF--NLIESQFKETFKK--LFGGGRAELI 1061 Query: 275 VDYCD----------------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318 + D K I+ S GE+ +V + + A + P + Sbjct: 1062 LTNPDDLLNTGIEINVQPPGKKLQNISLLSGGEKALVAISLLFAMILI-----RPTPFCI 1116 Query: 319 LDEISAHLDEDKRNALFRIVTDIG--SQIFM 347 LDEI A LD+ + + D+ SQ + Sbjct: 1117 LDEIDAALDDANVDRFASYLKDLSRESQFIV 1147 >gi|21909912|ref|NP_664180.1| putative chromosome condensation and segregation SMC protein [Streptococcus pyogenes MGAS315] gi|28896389|ref|NP_802739.1| chromosome segregation SMC protein [Streptococcus pyogenes SSI-1] gi|21904100|gb|AAM78983.1| putative chromosome condensation and segregation SMC protein [Streptococcus pyogenes MGAS315] gi|28811640|dbj|BAC64572.1| putative chromosome segregation SMC protein [Streptococcus pyogenes SSI-1] Length = 1175 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ F T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFYKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L++ + +++E+Y K Sbjct: 239 ERQTKDTEALAVLQQDLASYYAKRQSMEEDYQK 271 >gi|302817360|ref|XP_002990356.1| hypothetical protein SELMODRAFT_428807 [Selaginella moellendorffii] gi|300141918|gb|EFJ08625.1| hypothetical protein SELMODRAFT_428807 [Selaginella moellendorffii] Length = 1205 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 KI + + F++Y + T +G NG GK+N+++AISF+ R R A Sbjct: 9 KIHRIEVENFKSYKGHQVIGPFKNFTAIIGPNGAGKSNLMDAISFVLGVRSMQLRGAQLK 68 Query: 63 DVT 65 D+ Sbjct: 69 DLI 71 >gi|114775605|ref|ZP_01451173.1| hypothetical protein SPV1_04733 [Mariprofundus ferrooxydans PV-1] gi|114553716|gb|EAU56097.1| hypothetical protein SPV1_04733 [Mariprofundus ferrooxydans PV-1] Length = 637 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 127/399 (31%), Gaps = 73/399 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63 ++++ L I FR S ++ F HT+ VG N +GK+ + EA+ L P R FRR + Sbjct: 1 MRVRRLTIENFRGVRSGQVDF-RGHTLLVGGNNIGKSTVCEALDLVLGPERLFRRPVIDE 59 Query: 64 VTRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK--- 118 S + + L D+S + E R R +R + ND+ + VDE Sbjct: 60 HDFYKGKYLSADNKPVEIIIRALLTDLSEEAERRFHRHLR--RWNDIDGQFVDESGDGPE 117 Query: 119 ---------HLRISWL----VPSMDRI------------FSGLSMERRRFLDRMVFAIDP 153 L + ++ D I E++ R +F + Sbjct: 118 AADAEGTVWALPVVFIGRYEADEDDFIGNTFFDHPVDEMDEEEPAEQQLGGGRKIFGREQ 177 Query: 154 R------HRRRMIDFERLMR-GRNRLL-TEGYFDSS-WCSSIEAQMAELGVKINIARVEM 204 + R + R + R LL T D S E +A L Sbjct: 178 KRLCGFIFLRTLRTGSRALSLQRGSLLDTVLRLDGSGLTEMWEKTLAGL----------- 226 Query: 205 INALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 L I E Q K I+ L F++ D +A L D + Sbjct: 227 -RGLDPAIGEIEQLKTIRDEIRKRLARFVNLSEDDDATGF---FASDLTRDHLRDVVRLF 282 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG-FAPILLLDEI 322 P + + GS + + A I++ G + I ++E Sbjct: 283 LAAQPAPHQVPFQ------KLGTGS-------INLLVFALLTFIADLKGNRSVIFAMEEP 329 Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 L + + R + Q +T + + T Sbjct: 330 EIALPPHTQRRVIRFILSEMGQAIVTSHSPYIIEQFEPT 368 >gi|312111707|ref|YP_003990023.1| chromosome segregation protein SMC [Geobacillus sp. Y4.1MC1] gi|311216808|gb|ADP75412.1| chromosome segregation protein SMC [Geobacillus sp. Y4.1MC1] Length = 1187 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L+I F+++A + + F T VG NG GK+NI +AI ++ + R A Sbjct: 1 MFLKRLDIIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS 71 D+ GS S Sbjct: 61 MEDIIFAGSDS 71 >gi|304440216|ref|ZP_07400106.1| possible chromosome segregation protein Smc [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371265|gb|EFM24881.1| possible chromosome segregation protein Smc [Peptoniphilus duerdenii ATCC BAA-1640] Length = 1182 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 96/299 (32%), Gaps = 54/299 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPG--RGFRRAS 60 + +K L + F+++A ++ FD + T VG NG GK+NI +AI L + R Sbjct: 1 MYLKSLTMQGFKSFADKTKIEFDNEITGVVGPNGSGKSNISDAIMWVLGETSIKSLRGKK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCL----QINDVVIR 111 DV G+ F ++ +I + R L +IN +R Sbjct: 61 MEDVIFSGTNKRKPLGFAEVTILFNNIDRALNIDFDEVAVSRKMYRSLESEYRINGEKVR 120 Query: 112 VVDE---------------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPR 154 + D L RI D + S +RR + + + Sbjct: 121 LKDVKELFMDTGIGKDGYSLIGQGRI-------DEVLSNSPDKRRAIFEEASGISKFKSK 173 Query: 155 HRRRMIDFERL-------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 + + R + R L E + ++ EL + I+ Sbjct: 174 KQEALNKLNRTDQNITRISDIISEIATRVDELEEESKKAIKYLEYTGELKELDLTISKRD 233 Query: 202 ----VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + + S+++ E + + ++ L + F + L+ E + Sbjct: 234 YSNIINYLKDRSTILKEKTSEFDKTNLNLEDFRNKEKIFKEDIEKLQIELENLNLKNFE 292 >gi|295399781|ref|ZP_06809762.1| chromosome segregation protein SMC [Geobacillus thermoglucosidasius C56-YS93] gi|294978184|gb|EFG53781.1| chromosome segregation protein SMC [Geobacillus thermoglucosidasius C56-YS93] Length = 1187 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L+I F+++A + + F T VG NG GK+NI +AI ++ + R A Sbjct: 1 MFLKRLDIIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS 71 D+ GS S Sbjct: 61 MEDIIFAGSDS 71 >gi|257870562|ref|ZP_05650215.1| chromosome partition protein SMC [Enterococcus gallinarum EG2] gi|257804726|gb|EEV33548.1| chromosome partition protein SMC [Enterococcus gallinarum EG2] Length = 1196 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 32/216 (14%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI L + R Sbjct: 1 MYLKRIEIAGFKSFADRTIIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ +N R Sbjct: 61 MPDIIFAGSDTRKPLNVAEVTIILDNTDHYLPMDYSEISVTRRLRRTGESDFYLNKQSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IFS +RR + + + Sbjct: 121 LRDVQELFMDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEA--------AGVLKYKQ 172 Query: 164 RLMRGRNRLLTEGYFDSSWCSS---IEAQMAELGVK 196 R + +L + +E Q+ L + Sbjct: 173 RKKKAEQKLFETEDNLNRLQDIIYELEDQLIPLAAQ 208 >gi|225419775|ref|ZP_03762078.1| hypothetical protein CLOSTASPAR_06113 [Clostridium asparagiforme DSM 15981] gi|225041579|gb|EEG51825.1| hypothetical protein CLOSTASPAR_06113 [Clostridium asparagiforme DSM 15981] Length = 1186 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I F+++A+ L F T VG NG GK+N+ +A+ ++ + R AS Sbjct: 1 MYLKSIEIQGFKSFANKLVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGAS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ F ++ + I T R R IN R Sbjct: 61 MQDVIFSGTELRKPQGFAYVAITLDNGDHQLAIDYDQVTVSRRLYRSGESEYMINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + K +D+I SG ERR D Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFD 162 >gi|14279543|gb|AAK58634.1|AF271731_1 SMC2-like condensin [Arabidopsis thaliana] gi|13449986|gb|AAG27593.2| SMC2-like condensin [Arabidopsis thaliana] Length = 1177 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA+ +V FD G NG GK+NIL++I F ++ + R A Sbjct: 1 MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G V G E +I++ + + L IN Sbjct: 61 NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQVVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + + N + V + + Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQG 148 >gi|68066462|ref|XP_675214.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56494268|emb|CAH99081.1| hypothetical protein PB001653.02.0 [Plasmodium berghei] Length = 398 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 + I+ + + F++Y + + F Q G NG GK+N+L+AI F+ R Sbjct: 1 MHIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60 Query: 60 SYADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104 ++ + G ++ ++ RD +++ + Sbjct: 61 RLDELIYKQGQAGITKGSVTIKFNNEEKPSPLQEPYRDMKTITITR 106 >gi|327310670|ref|YP_004337567.1| purine NTPase [Thermoproteus uzoniensis 768-20] gi|326947149|gb|AEA12255.1| purine NTPase [Thermoproteus uzoniensis 768-20] Length = 706 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 ++ + + F+ + L F G NG GK+++LEA++ G + +A +AD Sbjct: 2 LRSIELRNFKAHEELAADFVEGVNFIYGPNGAGKSSLLEAVAVALYGSKWVQKVKARWAD 61 Query: 64 VTRIGSPSFFSTFARV 79 + R G+ A V Sbjct: 62 LVRRGASEASVRLAFV 77 >gi|241894937|ref|ZP_04782233.1| DNA repair and genetic recombination protein [Weissella paramesenteroides ATCC 33313] gi|241871655|gb|EER75406.1| DNA repair and genetic recombination protein [Weissella paramesenteroides ATCC 33313] Length = 563 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 69/211 (32%), Gaps = 31/211 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I F L + F+ T+ G+ G GK+ I++A+ L+ GRG D R Sbjct: 2 LQELSIQNFAIIPKLNISFEPGMTVLTGETGAGKSIIIDAVGLLTGGRG-----SQDYIR 56 Query: 67 IGSPSFFSTFARVEGMEGLA------DISIKLETRD--------DRSVRCLQINDVVIR- 111 G+ + ++ A D+ IKLE +++N+ ++ Sbjct: 57 EGTDTA-VLQGLIDVEPNTALSAILDDLGIKLEDNQLLIHRELHRNGRNVIRVNNTLVNA 115 Query: 112 -VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDP---RHRRRMIDFER-- 164 + L HL + + LD I P + + + + Sbjct: 116 TALKLLGSHLVDIHGQNEHQALMQ--PEQHLSLLDEFAKNQIQPVMTAYSQAYAKYRQLE 173 Query: 165 -LMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 R S ++ E G Sbjct: 174 DAYHQRQADEQAWAQRLDMLSFQSNELNEAG 204 >gi|146339047|ref|YP_001204095.1| putative chromosome segregation SMC protein [Bradyrhizobium sp. ORS278] gi|146191853|emb|CAL75858.1| putative chromosome segregation SMC protein [Bradyrhizobium sp. ORS278] Length = 1154 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K+ L + F+ + V + T VG NG GK+N++EA+ + + AD Sbjct: 1 MKLTRLRLHGFKTFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRAAD 60 Query: 64 V---TRIGSP-----SFFSTFARVEGMEGLADISI------KLETRDDR-SVRCLQINDV 108 + GS + ++ + A ++ ++ R +R + +IN Sbjct: 61 MDAVIFSGSNTRPSRNHAEVVMTIDNSDRTAPAAVNDRDILEISRRIEREAGSVYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K T++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1042 GKKPQTLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1096 Query: 338 VTDIGS 343 + ++ Sbjct: 1097 LHEMKG 1102 >gi|148253812|ref|YP_001238397.1| condensin subunit Smc [Bradyrhizobium sp. BTAi1] gi|146405985|gb|ABQ34491.1| condensin subunit Smc [Bradyrhizobium sp. BTAi1] Length = 1154 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K+ L + F+ + V + T VG NG GK+N++EA+ + + AD Sbjct: 1 MKLTRLRLHGFKTFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRAAD 60 Query: 64 V---TRIGSP-----SFFSTFARVEGMEGLADISI------KLETRDDR-SVRCLQINDV 108 + GS + ++ + A ++ ++ R +R + +IN Sbjct: 61 MDAVIFSGSNTRPARNHAEVVMTIDNSDRTAPAAVNDRDILEISRRIEREAGSVYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K T++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1042 GKKPQTLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1096 Query: 338 VTDIGS 343 + ++ Sbjct: 1097 LHEMKG 1102 >gi|294655464|ref|XP_002770131.1| DEHA2B15136p [Debaryomyces hansenii CBS767] gi|199429980|emb|CAR65500.1| DEHA2B15136p [Debaryomyces hansenii] Length = 1170 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVISGWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E IS+ + S + L +N Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFDNSEISKSPIGFENCPKISVTRQIILGGSSKYL-VNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + LN + + + + + Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148 Score = 36.0 bits (82), Expect = 9.2, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQI 345 S G++ ++ + + +A + AP+ +LDE+ A LD + ++ GSQ Sbjct: 1085 SGGQRSLIALSLIMALLQF-----KPAPMYILDEVDAALDLSHTQNIGHLIKTRFKGSQF 1139 Query: 346 FMTGTDKSVF 355 + + +F Sbjct: 1140 IIVSLKEGMF 1149 >gi|317488153|ref|ZP_07946727.1| RecF/RecN/SMC N terminal domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316912740|gb|EFV34275.1| RecF/RecN/SMC N terminal domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 436 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 87/252 (34%), Gaps = 43/252 (17%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A L + VG NG GK+NI +A+ L + R + Sbjct: 1 MYLKSLVLKGFKSFADRSVLALEPGIIAVVGPNGSGKSNISDAVLWVLGERNAKHLRGQA 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS + S A V+ + +D ++ ++ + R + IN VV R Sbjct: 61 MEDVIFAGSSARKSVGIAEVDLVLDNSDGTLPVDFDEVAVTRRMYRSGESEYLINGVVAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +D L S+D I +RR ++ Sbjct: 121 RMDVLDILHDSGLGTGTHSIISQGSLDSILQSKPEDRRALIEEAAG-------------- 166 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENF 221 +++ + R ++++A +A + + + L Q Sbjct: 167 -VLKHKQRKAKSERK----LAAMDAHLARV-KDVAAEVERQLGPLERKAKRARTYQGLAD 220 Query: 222 PHIKLSLTGFLD 233 LSL+ +D Sbjct: 221 ELADLSLSLAVD 232 >gi|312966699|ref|ZP_07780918.1| recF/RecN/SMC N terminal domain protein [Escherichia coli 2362-75] gi|312288651|gb|EFR16552.1| recF/RecN/SMC N terminal domain protein [Escherichia coli 2362-75] Length = 550 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 72/402 (17%), Positives = 140/402 (34%), Gaps = 76/402 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-----SFLSP-----GRGF 56 ++ L + +FR ++ L + F+ T+ +G+NG GKT+IL AI F++ G G Sbjct: 66 LRRLTLKDFRRFSLLEIKFEEDLTVIIGNNGKGKTSILYAIAKTLSWFVANILKEGGSGQ 125 Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 R + D+ + + +GL + I+L ++ + D ++ +L Sbjct: 126 RLSELTDIKNDAENRYADVSSTFFFGKGLKSVPIRLSRS---ALGTAERRDSEVKPARDL 182 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 R+ + ++ FA+ R F R + N E Sbjct: 183 ADIWRVI---------------NEAKTINLPTFALYNV--ERSQPFNRNTKD-NAGRREE 224 Query: 177 YFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 FD ++ ++ + I+ +SS I E Q+ N L +DG Sbjct: 225 RFD-AYSQALGGAGRFDHFVEWYIYLHKRTISDISSSIKELEQQVN------DLQRSVDG 277 Query: 235 KFDQSFCALKEEYAKKLFDGRKM-----------DSMSRRTL-----------------I 266 S +L E+ KL + + +S+ + + + Sbjct: 278 GM-VSVKSLLEQMKLKLSEASERNDAAVSSKMVTESVQKSIVEKSICSVVPSISKIWVEM 336 Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-----HARLISNTTGFAPILLLDE 321 + V +TI S G++ + + LA L+ N I+L+DE Sbjct: 337 TTGSDLVKVTNDGHDVTIDQLSDGQRVFLSLVADLARRMVMLNPLLENPLEGRGIVLIDE 396 Query: 322 ISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNET 361 I HL + + + + Q +T V ++ + Sbjct: 397 IELHLHPKWQQEVILNLRSVFPNIQFIITTHSPIVLSTIEKR 438 >gi|15895343|ref|NP_348692.1| DNA repair protein recN, ATPase [Clostridium acetobutylicum ATCC 824] gi|15025061|gb|AAK80032.1|AE007710_2 DNA repair protein recN, ATPase [Clostridium acetobutylicum ATCC 824] gi|325509488|gb|ADZ21124.1| DNA repair protein recN, ATPase [Clostridium acetobutylicum EA 2018] Length = 570 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 16/115 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + LNI F + + F+ + G+ G GK+ +++AI+++ G+ R R Sbjct: 2 LLQLNIKNFALIEDITINFEKGFNVLFGETGAGKSILIDAINYVLGGKSSRG-----FIR 56 Query: 67 IGS-----PSFFSTF-----ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI 110 G + F+ A +E M+ + + + +S + + +IN + Sbjct: 57 TGEKRTYVEAIFTIENDKTKAELENMDIEYEDCVIVSRETFKSGKSIAKINGKSV 111 >gi|291524427|emb|CBK90014.1| Predicted ATP-binding protein involved in virulence [Eubacterium rectale DSM 17629] gi|291527555|emb|CBK93141.1| Predicted ATP-binding protein involved in virulence [Eubacterium rectale M104/1] Length = 457 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 26/41 (63%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46 KI+ L + +R + + + V + + +F G NG GKT++LEA Sbjct: 5 KIQELGLRNYRGFDNKKFVLNPRMNVFAGKNGSGKTSVLEA 45 >gi|284929017|ref|YP_003421539.1| RecF/RecN/SMC N-terminal domain-containing protein [cyanobacterium UCYN-A] gi|284809476|gb|ADB95181.1| RecF/RecN/SMC N-terminal domain-containing protein [cyanobacterium UCYN-A] Length = 1008 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 9 FLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L + F +Y + L F G NG GK+++LEAI++ G+G R +S DV Sbjct: 5 KLTLKNFLSYQDVTLDFQGLHTVCICGANGAGKSSLLEAIAWTVWGQG-RTSSDEDVIHA 63 Query: 68 GSPSFFSTFARV 79 + + F + Sbjct: 64 SADYVRTDFVFI 75 >gi|307128827|ref|YP_003880843.1| ATP binding protein [Dickeya dadantii 3937] gi|306526356|gb|ADM96286.1| ATP binding protein [Dickeya dadantii 3937] Length = 509 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 69/420 (16%), Positives = 135/420 (32%), Gaps = 63/420 (15%) Query: 5 IKIKFLNISE---FRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAI-----SFLSPG 53 +KIK + F + +L + + T+ VG+NG GKT+IL+A+ ++ Sbjct: 24 MKIKQFRLHNVGRFTSLDALIAPTADYPSNVTVLVGNNGAGKTSILQALATSLSWLVARV 83 Query: 54 RGFRRASYADVTRIGSPSFFSTFARVEGM--------------EGLADISIKLETRDDRS 99 R + + G+ + T A +E M + ++ + Sbjct: 84 RSEKGSGSG--INEGTITNGHTSAAIEVMAQDTPPLSGHAADNDAEYHWTLAKTRSGKKG 141 Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRR 157 Q+N V L H R + + + +ER LD + + H + Sbjct: 142 QHTSQLN-----AVSALADHYRSALTQNEQSSLPLIAFYPVER-SVLDIPLKIKNKHHFQ 195 Query: 158 RMIDFERLMRG-----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++ ++ + R D + + L +++ + Sbjct: 196 QVDGYDNALNQGVDFRRFFEWFREREDIE-NENDGVVLTNLFESNPEGVLKVFEDIEDAD 254 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 + E F LS + K + L +E K D + S T P S+ Sbjct: 255 YRVDKLEIFDWAGLS----EEFKKLNNALKLMQEVQDKAKDPQLNAVRSAITAFMPGFSN 310 Query: 273 LIVDY----------CDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPIL 317 L V +A + S GE+ ++ + LA + N I+ Sbjct: 311 LKVRRKPRLHMSVDKNGEAFNVLQLSQGEKSLMALVGDIARRLAIMNPTLDNPLHGQGIV 370 Query: 318 LLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 L+DE+ HL + ++ +T Q +T V + + N + + Sbjct: 371 LIDEVDMHLHPSWQRSIIERLTTTFPHCQFILTTHSPLVISDYKDVL-VYSLDNGELTVV 429 >gi|268323972|emb|CBH37560.1| hypothetical protein containing RecF/RecN/SMC N terminal domain [uncultured archaeon] Length = 920 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K L + +R Y ++ + +G NGVGKT ++E+I ++ G + ++ Sbjct: 1 MLLKTLTLRNYRKYKNVNVEIPDGVIGIIGLNGVGKTTLIESIGWVLFGH-HAARTTKEL 59 Query: 65 TRIGSPSF 72 + S Sbjct: 60 IKREGASH 67 >gi|188992197|ref|YP_001904207.1| Recombination protein N [Xanthomonas campestris pv. campestris str. B100] gi|167733957|emb|CAP52163.1| Recombination protein N [Xanthomonas campestris pv. campestris] Length = 583 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 38/278 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F + L F T+ G+ G GK+ +++A+ FLS R + + V R Sbjct: 31 LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 85 Query: 67 IGSPSF-----FSTFAR--------VEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111 G+ F A ++ A ++ R D R IN + Sbjct: 86 HGADRAELSAEFQLPAEHPGLTWLADNELDDDAQCQLRRIIRADGGSRA-WINGRPVTSS 144 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168 + +L L + + S LD R + R+ ++ L+ Sbjct: 145 QLSDLAARLVEIHGQHEHQALMARNSQL--ALLDAYARNSAQREQV-RQASQRWQALLDE 201 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHI 224 R+ L +G S +E Q+AEL R ++ I AL + Sbjct: 202 RDALSAQGDV-SDRIGFLEHQLAEL------EREDLDPAAIAALDTNHRRQAHATALIGA 254 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 S+ L+G S L ++ L + + Sbjct: 255 CESVVQQLNGDEGPSALGLLQDSRHDLARVAEHEPRLG 292 >gi|163839566|ref|YP_001623971.1| DNA repair protein [Renibacterium salmoninarum ATCC 33209] gi|162953042|gb|ABY22557.1| DNA repair protein [Renibacterium salmoninarum ATCC 33209] Length = 569 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 42/303 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + I + A L T+ G+ G GKT ++ A+ L R A R Sbjct: 2 IEEIRIRDMGVIAEATLPLGPGFTVVTGETGAGKTMVVTAVGLLLGARS-----DAGAVR 56 Query: 67 IGSPS------------------FFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 +G+ + A +E +G A++ + D + + Sbjct: 57 LGAKAASAEATVQLPSGHEALTRAEEAGAEIENFDGAAELLLARSVGSDGRSKAFVGGRS 116 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA-IDPRHRRRMIDFERLM 166 + V+ E+ L + D+I ++ +R LD A +ER Sbjct: 117 TPVGVLAEIGAELVVV--HGQSDQIRLKSAVAQREALDSFAGAGFGTDLAEYRSQYER-- 172 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 + + A ++ +A E I+ L E E + Sbjct: 173 ------WRTAQTELESLRHAGRERAREAEELTLALAE-IDELDPQAAE---DEELKAESV 222 Query: 227 SLTGFLDGKFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 L+ + S + EE+A+ +D R D++ + ++ Sbjct: 223 KLSNVESLRLAASAAHEALIAEEFAEVADANTLVDGAKRALEQVAEHDDVLRVHGERLAE 282 Query: 284 IAH 286 + Sbjct: 283 AGY 285 >gi|116193581|ref|XP_001222603.1| hypothetical protein CHGG_06508 [Chaetomium globosum CBS 148.51] gi|88182421|gb|EAQ89889.1| hypothetical protein CHGG_06508 [Chaetomium globosum CBS 148.51] Length = 1069 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 12/135 (8%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61 I + + F Y + +G NG GK++++ AI L G R +++ Sbjct: 91 AIVRVKVENFVTYEEAEFFLGPNLNMVIGPNGTGKSSLVCAIC-LGLGYSSNVLGRASAF 149 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119 + + G + E + + L R + + R IN R + +L + Sbjct: 150 GEFVKHGKDEAGIEVELQKLPEHSENPIVGLTIRREDNSRKFTINGQRASHREIQKLMRS 209 Query: 120 LRISW-----LVPSM 129 RI +P Sbjct: 210 FRIQIDNLCQFLPQD 224 >gi|329765638|ref|ZP_08257212.1| SMC domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137882|gb|EGG42144.1| SMC domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 692 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 13/109 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +F +++ RL F T+FVG NG GK++I++AI+F G+ R S + + Sbjct: 2 ITAIELGDFLSHSQTRLEFGNGVTVFVGQNGAGKSSIIDAITFALFGQ-HTRKSNKGLIK 60 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 GS F A + + + ++VR + + E Sbjct: 61 RGSNQGF------------AKVEFNINGKQYQAVRKIDNKGGLAAKFSE 97 Score = 41.8 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 10/78 (12%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG----- 342 S GEQ V + + L A L+ + +++LDE + HLD +++ AL +++ + Sbjct: 596 SGGEQVSVALALRLGMASLLGASN--LNLMILDEPTTHLDAERKKALVGVLSQLSDIANI 653 Query: 343 ---SQIFMTGTDKSVFDS 357 Q + D +F+ Sbjct: 654 GKPMQFIIITHDAEIFED 671 >gi|307594762|ref|YP_003901079.1| SMC domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549963|gb|ADN50028.1| SMC domain protein [Vulcanisaeta distributa DSM 14429] Length = 803 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA--DV 64 I + I FR+ + V G NG GKT+ILEAI+ G + R Y D+ Sbjct: 2 ITKVEIENFRSIMRGKAVITEGINFIHGPNGSGKTSILEAIAIALYGSEWVRGKYRLSDL 61 Query: 65 TRIGSPSFFS--TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 R G+ S + ++G + L + E + L + D Sbjct: 62 VRRGASSAVIRLEYVGIDGRKYLIQRAFSTERTLESQTYVLDEGGRRVAARDR 114 >gi|226226600|ref|YP_002760706.1| chromosome segregation protein [Gemmatimonas aurantiaca T-27] gi|226089791|dbj|BAH38236.1| chromosome segregation protein [Gemmatimonas aurantiaca T-27] Length = 1191 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++ L + F+ +A L VF+ T VG NG GK+N+ +A+ ++ R R A Sbjct: 1 MRLTKLEVHGFKAFADHLEFVFEKGVTAIVGPNGSGKSNVSDAVRWVLGEQRARAMRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS + + EG + K R +R +N R Sbjct: 61 MEDVIFHGSSARKAVNMAEVSLHFDNTEGELPVPFKEVVITRRLLRSGESEYLLNRAPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + +D + S +RR + Sbjct: 121 LRDIQDLVRGTGLGADSGVVIESKMIDALLSDRPDDRRELFE 162 >gi|219120977|ref|XP_002185720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582569|gb|ACI65190.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 220 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 17/136 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 IK + + F + LR+ G NG GK+ IL AI S R R + Sbjct: 66 IKEVYVENFMCHPKLRVTLCRNVNFIHGQNGSGKSAILAAIQICLGASASRTHRARNLKG 125 Query: 64 VTRIGSPSFFSTFARV----EGMEG--------LADISIKLETRDDRSVRCL--QINDVV 109 + R + + RV +G +G + + R + L Sbjct: 126 LVRKDAGPNATAKVRVTLWNQGNDGYLPETYGDSITVERTISLRGGYNGYKLLDHNGKER 185 Query: 110 IRVVDELNKHLRISWL 125 R +L++ L + + Sbjct: 186 SRNKKDLHEMLDMLNI 201 >gi|198416844|ref|XP_002121540.1| PREDICTED: similar to SMC5 protein [Ciona intestinalis] Length = 1071 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 5/123 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64 I +N+ F Y F+ + + +G NG GK++I+ AI GR A ++ Sbjct: 30 IIRINVQNFLTYDQCTFRFNPKLNVIIGPNGTGKSSIVCAICIGLAGRTSLLARAKEIGD 89 Query: 65 -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHLR 121 + G ++ ++ +N V ++ ++E L Sbjct: 90 YIQHGKQQATIEVELYNVPHCAIIRRTLSHGQNGKTASTWHLNGNQVNVKQIEETVGKLN 149 Query: 122 ISW 124 I Sbjct: 150 IQL 152 >gi|257060802|ref|YP_003138690.1| exonuclease SbcC [Cyanothece sp. PCC 8802] gi|256590968|gb|ACV01855.1| exonuclease SbcC [Cyanothece sp. PCC 8802] Length = 1008 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 9 FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L + F +Y L F HT G NG GK+++LEAI+++ G+ R AS DV Sbjct: 5 ELTLKNFLSYQQATLNFRGLHTACICGANGAGKSSLLEAITWVIWGKS-RAASDDDVIHG 63 Query: 68 GSPSFFSTFARVEGME 83 G F + E Sbjct: 64 GCDDVRVDFQFISNQE 79 >gi|38637815|ref|NP_942789.1| hypothetical protein PHG151 [Ralstonia eutropha H16] gi|32527153|gb|AAP85903.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 571 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 55/363 (15%), Positives = 108/363 (29%), Gaps = 67/363 (18%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 +++ + I FR +G GK++IL+AI R R A Sbjct: 3 RLRKIEIRHFRGIQHFTWWPGPGLNALIGPGDAGKSSILDAIDLCLGAR--RTA------ 54 Query: 66 RIGSPSFFSTFA----RVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHL 120 + G FF +E G D ++K +R + + V+ D + + Sbjct: 55 QFGDHDFFRMNVDQPIVIEITVGELDDALKNFEAYGLYLRGFRAEDGAVLEEPDAHCETV 114 Query: 121 RISWLVPSMD-----RIFSGLSM-----ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 L D ++ S + + DR+ I P D +N Sbjct: 115 LTIRLTVQSDLEPQWQLISERAAAQGLTRHLAWADRL--RIAPGWLGASGD-------QN 165 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 G + A L AR+ + + + + +Q+ +L + Sbjct: 166 LSWRRGSVLNRLSDERADASAALVRAGRDARLRFGDEAQNQLGQALQQVLATATELGVPV 225 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 + K L D + + + + + G Sbjct: 226 GGEV--------------KALLDAHAISVTGGAIAL----------HDAAGVPLRSLGLG 261 Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS----QIF 346 ++++ G+ A A ++L+DEI L+ + L + Q+F Sbjct: 262 SGRLLVAGLQRAAAM-------ETSVVLVDEIETGLEPHRIYRLLVTLGAKEPAPPLQVF 314 Query: 347 MTG 349 +T Sbjct: 315 LTT 317 >gi|18310698|ref|NP_562632.1| chromosome segregation protein SMC [Clostridium perfringens str. 13] gi|18145379|dbj|BAB81422.1| chromosome partition protein [Clostridium perfringens str. 13] Length = 1185 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A L F T VG NG GK+N+ +++ L + R A Sbjct: 1 MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ +A+V + + L+ D + R L IN+ R Sbjct: 61 MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + +D I SG +RR L+ Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162 >gi|18313677|ref|NP_560344.1| purine NTPase [Pyrobaculum aerophilum str. IM2] gi|18161228|gb|AAL64526.1| purine NTPase, probable [Pyrobaculum aerophilum str. IM2] Length = 702 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 3/111 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYAD 63 I+ + + F+ + F G NG GKT+I+EAIS G + R +AD Sbjct: 2 IRRIELLNFKAHGKASFKFGDGVNFIYGPNGSGKTSIMEAISVALFGSQWVRKVGGKWAD 61 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 R G+ S + + E S + IN +I D Sbjct: 62 YLRRGATSGEVKLYMSHMGSEILIVRKFGENGTTPSGTYMSINGSIIARGD 112 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 13/184 (7%) Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 + E+++ + +I R E I L + +I+ +L Sbjct: 524 KAQLKDAESELESVKTEIEKMRGE-IEKLDKALA------TGKNIRNTLGEIKPLARQIL 576 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVG 298 A+ EE R +S L+ + + + I S GEQ ++ + Sbjct: 577 LRAINEELNYVFLKLRHKESFKSAQLVELNGRYVARISTPTGYIEHNLLSLGEQNLLALS 636 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI--FMTGTDKSVFD 356 I +A AR + G AP ++LDE + HLDE+ R + +V D+ S + + + F+ Sbjct: 637 IRVALARAL---LGGAPFMMLDEPTEHLDEEHRRRIVELVRDLTSVVPTIVVTSHLGEFE 693 Query: 357 SLNE 360 + + Sbjct: 694 EVAD 697 >gi|148544382|ref|YP_001271752.1| condensin subunit Smc [Lactobacillus reuteri DSM 20016] gi|184153746|ref|YP_001842087.1| cell division protein [Lactobacillus reuteri JCM 1112] gi|227363193|ref|ZP_03847327.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus reuteri MM2-3] gi|325682702|ref|ZP_08162218.1| cell division protein Smc [Lactobacillus reuteri MM4-1A] gi|148531416|gb|ABQ83415.1| condensin subunit Smc [Lactobacillus reuteri DSM 20016] gi|183225090|dbj|BAG25607.1| cell division protein [Lactobacillus reuteri JCM 1112] gi|227071799|gb|EEI10088.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus reuteri MM2-3] gi|324977052|gb|EGC14003.1| cell division protein Smc [Lactobacillus reuteri MM4-1A] Length = 1187 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 54/385 (14%), Positives = 126/385 (32%), Gaps = 50/385 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++ L + F+++A + F+ T VG NG GK+NI+EAI ++ + R Sbjct: 1 MQLLSLTLDGFKSFAQKTTIKFEPGMTGIVGPNGSGKSNIIEAIQWVMGEQSAHHLRGDR 60 Query: 61 YADVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIR 111 ADV GS + LA +L IND +R Sbjct: 61 MADVIFNGSSDRKPLNRALVSITLDNSDHYLASEFTELTITRKIYRNGDSEYLINDQNVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+G ++RR ++ + ++++ E Sbjct: 121 LKDITDLFIDSGLGRESFSIISQGRIEEIFNGKPIDRRGIIETVAG--VAKYKKNKETAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL-IMEYVQKENFP 222 + + + + S +E Q+ L + + + + +++ Q Sbjct: 179 KRL---TTTMENLNRVNDIISELEKQIEPL-EEQSAIAQDYLEQKKQFDVLDRTQTVRHY 234 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-SMSRRTLIGPHRSDLIVDYCDKA 281 L K Q+ +K+ + D +++D +R + + L ++ Sbjct: 235 DEYYGKLTKLGAKLKQAEEMVKDYQRQAGHDRQQLDNLKQKRQQLNATKDRLQAIILNQT 294 Query: 282 --------------ITIAHGSTGEQKVVL----VGIFLAHARLISNTTGFAPI---LLLD 320 + ++++ + L + L++ Sbjct: 295 EAIAKYENQQSVSSVRREQRENEQRRLTAQQAELNARLKEVKASQRANDEQLAEQKALIN 354 Query: 321 EISAHLDEDKRNALFRIVTDIGSQI 345 A + ++ + + + Q+ Sbjct: 355 SQQAEFEAARKMSSSERIATLKQQV 379 >gi|269798340|ref|YP_003312240.1| ATP-dependent endonuclease of the OLD family- like protein [Veillonella parvula DSM 2008] gi|269094969|gb|ACZ24960.1| ATP-dependent endonuclease of the OLD family- like protein [Veillonella parvula DSM 2008] Length = 555 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56 + IK+++I +RN A + L F FVG+N VGK+N L+ + + GF Sbjct: 1 MYIKWMHIENYRNLADVTLSFHNDINYFVGENSVGKSNFLDLLEIIMECHGF 52 >gi|168217003|ref|ZP_02642628.1| chromosome segregation protein SMC [Clostridium perfringens NCTC 8239] gi|182380903|gb|EDT78382.1| chromosome segregation protein SMC [Clostridium perfringens NCTC 8239] Length = 1185 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A L F T VG NG GK+N+ +++ L + R A Sbjct: 1 MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ +A+V + + L+ D + R L IN+ R Sbjct: 61 MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + +D I SG +RR L+ Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162 >gi|242016837|ref|XP_002428912.1| structural maintenance of chromosomes smc1, putative [Pediculus humanus corporis] gi|212513707|gb|EEB16174.1| structural maintenance of chromosomes smc1, putative [Pediculus humanus corporis] Length = 79 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63 +K + + F++Y + T +G NG GK+N+++AISF+ + R +D Sbjct: 4 LKLIELENFKSYKGKQIIGPLKSFTAIIGPNGSGKSNLMDAISFVMGEKTTSLRVKRLSD 63 Query: 64 VTR 66 + Sbjct: 64 LIH 66 >gi|168214193|ref|ZP_02639818.1| chromosome segregation protein SMC [Clostridium perfringens CPE str. F4969] gi|170714289|gb|EDT26471.1| chromosome segregation protein SMC [Clostridium perfringens CPE str. F4969] Length = 1185 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A L F T VG NG GK+N+ +++ L + R A Sbjct: 1 MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ +A+V + + L+ D + R L IN+ R Sbjct: 61 MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + +D I SG +RR L+ Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162 >gi|169342728|ref|ZP_02863769.1| chromosome segregation protein SMC [Clostridium perfringens C str. JGS1495] gi|169299234|gb|EDS81304.1| chromosome segregation protein SMC [Clostridium perfringens C str. JGS1495] Length = 1185 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A L F T VG NG GK+N+ +++ L + R A Sbjct: 1 MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ +A+V + + L+ D + R L IN+ R Sbjct: 61 MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + +D I SG +RR L+ Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162 >gi|218247877|ref|YP_002373248.1| exonuclease SbcC [Cyanothece sp. PCC 8801] gi|218168355|gb|ACK67092.1| exonuclease SbcC [Cyanothece sp. PCC 8801] Length = 1008 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 9 FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L + F +Y L F HT G NG GK+++LEAI+++ G+ R AS DV Sbjct: 5 ELTLKNFLSYQQATLNFRGLHTACICGANGAGKSSLLEAITWVIWGKS-RAASDDDVIHG 63 Query: 68 GSPSFFSTFARVEGME 83 G F + E Sbjct: 64 GCDDVRVDFQFISNQE 79 >gi|259146222|emb|CAY79481.1| Smc2p [Saccharomyces cerevisiae EC1118] Length = 1170 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVITDWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S D+ + G + G IS+ + + + L IN Sbjct: 61 SLQDLIYKRGQAGVTKASVTIVFDNTDKSNSPIGFTNSPQISVTRQVVLGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 L + + + + + Sbjct: 120 HRAPQQSVLQLFQSVQLNINNPNFLIMQG 148 >gi|291288119|ref|YP_003504935.1| chromosome segregation protein SMC [Denitrovibrio acetiphilus DSM 12809] gi|290885279|gb|ADD68979.1| chromosome segregation protein SMC [Denitrovibrio acetiphilus DSM 12809] Length = 1111 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 54/304 (17%), Positives = 102/304 (33%), Gaps = 45/304 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +K K L + F+++ + F T +G NG GK+NIL+AI ++ + R A Sbjct: 1 MKFKSLVVQGFKSFVDKTVIEFPGGITCVIGPNGSGKSNILDAIRWIFGEQSAKELRGAD 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108 DV GS + FA V S+ + R +IN Sbjct: 61 MDDVIFAGSQHRKPTGFAEVSLTLSELPESLTAKWGSFSEITVSRKHYRTGDREYRINGK 120 Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144 R+ D E K +I P R F + ER++ Sbjct: 121 KCRLKDIREIFYDSGIGARSISIIEQGKVEKIIQSTPEDLRAFFEETAGVMRFKERKKEA 180 Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204 +R ++ + R+ D +R + L+ + A+ + L + R Sbjct: 181 ERRLYQ-TKDNLSRVTDIIAEIRAQMETLSVQTDRVKRYRELSAKQSALSKSVIFHRYSK 239 Query: 205 ----INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + ++ + + + K + ++ + ++EY K + +S Sbjct: 240 SFSDLKEITETVNQLKIDLSGYTEKFTKLTNIETEISSKLSTSRKEYNSKNELILQAESE 299 Query: 261 SRRT 264 S +T Sbjct: 300 SGKT 303 >gi|115375390|ref|ZP_01462652.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|310825201|ref|YP_003957559.1| ATPase-like protein [Stigmatella aurantiaca DW4/3-1] gi|115367592|gb|EAU66565.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|309398273|gb|ADO75732.1| ATPase-like protein [Stigmatella aurantiaca DW4/3-1] Length = 328 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 7/94 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + + + +R+ A+ + VG NG GK+N L+A+ + R + + Sbjct: 22 LTRVRLRNYRSIAACDVRLGP-LNFLVGPNGAGKSNFLDALRLI--TDALRTSLDHAL-- 76 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100 R I+LE + V Sbjct: 77 --RDRGGVHQVRRRSSGHPTHFGIRLELQLPEGV 108 >gi|320095083|ref|ZP_08026792.1| hypothetical protein HMPREF9005_1404 [Actinomyces sp. oral taxon 178 str. F0338] gi|319977950|gb|EFW09584.1| hypothetical protein HMPREF9005_1404 [Actinomyces sp. oral taxon 178 str. F0338] Length = 384 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 +K+ + + +RN+A + + + VG N GK+N+L+A+ F+S Sbjct: 1 MKLTHVELQNWRNFAHIEFDLNTRL-FVVGPNASGKSNLLDALRFIS 46 >gi|159030905|emb|CAO88586.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 1176 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 26/166 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + +S F+++ + F T+ G NG GK+NIL+A+ F L+ +G R Sbjct: 2 VYIKKVELSHFKSFGGTTPIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61 Query: 61 YADVT-------RIGSPSFFSTFARVEGMEGLADISIKLETR-----DDRSVRCLQINDV 108 D+ R S + S + + D + R IN Sbjct: 62 LPDLVNHSYNSQRHSSEASVSVTFDIADIPDATDRDWTVSRRLKVAKGGSYTSTYYINGE 121 Query: 109 VIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145 V EL+ L + P + RI S + ERR +D Sbjct: 122 TC-TVSELHDQLNRLRIYPEGYNVVLQGDVTRIISMNAKERREIID 166 >gi|49481891|gb|AAT66657.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 91/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCXDVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ + ++ L + LD + + R Sbjct: 112 KLVTTAXLRDIGATLXDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L S E QMA R++++ +E E + Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|159116626|ref|XP_001708534.1| SMC4-like protein [Giardia lamblia ATCC 50803] gi|157436646|gb|EDO80860.1| SMC4-like protein [Giardia lamblia ATCC 50803] Length = 1435 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Query: 7 IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYA 62 + L + F++YA + F + +G NG GK+N+++++ F+ R R + A Sbjct: 6 LTKLRLVNFKSYAGEHVLGPFKPSFSCILGANGSGKSNVIDSLLFVFGWRARALRHSRLA 65 Query: 63 DVTRIGSPSFFSTFARVE 80 D+ S ARV+ Sbjct: 66 DLIHTSSEHPELDHARVD 83 >gi|297530631|ref|YP_003671906.1| chromosome segregation protein SMC [Geobacillus sp. C56-T3] gi|297253883|gb|ADI27329.1| chromosome segregation protein SMC [Geobacillus sp. C56-T3] Length = 1187 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++A + + F T VG NG GK+NI +AI ++ + R A Sbjct: 1 MFLKRLDVIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS S ++ +G + + + R R IN R Sbjct: 61 MEDVIFAGSESRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|288930799|ref|YP_003434859.1| SMC domain protein [Ferroglobus placidus DSM 10642] gi|288893047|gb|ADC64584.1| SMC domain protein [Ferroglobus placidus DSM 10642] Length = 637 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +KI+ L + FR+ L + F + T+ +G N GKT+IL AI + Sbjct: 1 MKIERLEVKNFRSIYDLSVEFG-RITVLIGRNSSGKTSILNAIRVI 45 >gi|238019008|ref|ZP_04599434.1| hypothetical protein VEIDISOL_00870 [Veillonella dispar ATCC 17748] gi|237864492|gb|EEP65782.1| hypothetical protein VEIDISOL_00870 [Veillonella dispar ATCC 17748] Length = 576 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 1 MTNRIKIKFLN-ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRR 58 M ++ IK + IS +RN + +VFD +G+N +GKTNILE ++ LS G+ F+ Sbjct: 1 MKGKMYIKEIKTISNYRNLSGQSMVFDKDLNYIIGENNIGKTNILELLNIILSEGK-FKE 59 Query: 59 ASYADV 64 A +AD+ Sbjct: 60 ADFADL 65 >gi|227544366|ref|ZP_03974415.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus reuteri CF48-3A] gi|300909773|ref|ZP_07127234.1| cell division protein Smc [Lactobacillus reuteri SD2112] gi|227185629|gb|EEI65700.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus reuteri CF48-3A] gi|300893638|gb|EFK86997.1| cell division protein Smc [Lactobacillus reuteri SD2112] Length = 1187 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 109/304 (35%), Gaps = 29/304 (9%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++ L + F+++A + F+ T VG NG GK+NI+EAI ++ + R Sbjct: 1 MQLLSLTLDGFKSFAQKTTIKFEPGMTGIVGPNGSGKSNIIEAIQWVMGEQSAHHLRGDR 60 Query: 61 YADVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIR 111 ADV GS + LA +L IND +R Sbjct: 61 MADVIFNGSSDRKPLNRALVSITLDNSDHYLASEFTELTITRKIYRNGDSEYLINDQNVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+G ++RR ++ + ++++ E Sbjct: 121 LKDITDLFIDSGLGRESFSIISQGRIEEIFNGKPIDRRGIIETVAG--VAKYKKNKETAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL-IMEYVQKENFP 222 + + + + S +E Q+ L + + + + +++ Q Sbjct: 179 KRL---TTTMENLNRVNDIISELEKQIEPL-EEQSAIAQDYLEQKKQFDVLDRTQTVRHY 234 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-SMSRRTLIGPHRSDLIVDYCDKA 281 L K DQ+ +++ + D +++D +R + + L ++ Sbjct: 235 DEYYEKLTKLGAKLDQAEAMVRDYQGQADRDQQQLDNLKQKRQQLNATKDRLQAIILNQT 294 Query: 282 ITIA 285 IA Sbjct: 295 EAIA 298 >gi|321465331|gb|EFX76333.1| putative SMC5, structural maintenance of chromosome protein 5 [Daphnia pulex] Length = 1244 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 4/122 (3%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62 I +++ +F Y + L+ + +G NG GK+ I+ AI G+ R +S + Sbjct: 19 AIVRIHLKDFMTYNEVELIPGPNLNLILGPNGNGKSAIVSAICLGMAGKPSTIARASSLS 78 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 R G+ + EG + + T D++S Q V ++++ + L I Sbjct: 79 GYVRHGASKAI-INIELHNSEGQKFLVTREITLDNKSAWKYQGKPVSSTQIEDIIRKLNI 137 Query: 123 SW 124 Sbjct: 138 QV 139 >gi|312899127|ref|ZP_07758505.1| DNA repair protein RecN [Megasphaera micronuciformis F0359] gi|310619794|gb|EFQ03376.1| DNA repair protein RecN [Megasphaera micronuciformis F0359] Length = 561 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 89/270 (32%), Gaps = 25/270 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I F + L F T+F G+ G GK+ +L+AI L+ R + A R Sbjct: 2 LQSLHIENFALIEDIYLSFTDGVTVFTGETGAGKSILLDAIGMLAGKR-----ASASFVR 56 Query: 67 IGSPSFFSTFARV-------------EGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G+ +F A E +D I + R R+ R + +N ++ + Sbjct: 57 SGAEAFLVEGAFFLPSGNEGLVAFLEEQHIDTSDGEIIISRRFYRNGRGSVLVNGTLVPL 116 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRGR 169 L + + D + R LD + + ++ L R R Sbjct: 117 ATVRKLGLYLVDIHGQYDSRLIFDTAYHVRLLDSFTEGTCRCRTAYDKTYKTWKNLCRER 176 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSL 228 + L + ++ Q+ E+ + L + I E+ ++ ++ Sbjct: 177 DDLEHDESEKMRLLGILDFQIQEIEEAKLTKGED--EKLEADIRTASHAEHITEGLQTAM 234 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 + Q E + L D Sbjct: 235 AAMDGSERRQGMTDGIAEIRRSLLKNASYD 264 >gi|182625841|ref|ZP_02953607.1| chromosome segregation protein SMC [Clostridium perfringens D str. JGS1721] gi|177908875|gb|EDT71367.1| chromosome segregation protein SMC [Clostridium perfringens D str. JGS1721] Length = 1185 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A L F T VG NG GK+N+ +++ L + R A Sbjct: 1 MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ +A+V + + L+ D + R L IN+ R Sbjct: 61 MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + +D I SG +RR L+ Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162 Score = 36.4 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 18/194 (9%) Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 + R +L+ + S S+++A++ LG A E ++++ K Sbjct: 963 KNRFKLIEDMNSHKSRISTLKARITGLGNVNVNAIEEFKEISEKYNFMTTERDDLEKAKE 1022 Query: 227 SLTGFLDGKFDQSFCALKEEY--AKKLFDGRKMDSMSRRTL-IGPHRSDLIVDYCDKAI- 282 L ++ + ++ + KLFD + + + D + D + Sbjct: 1023 ELLNVIEEMTSKMRVVFRQNFNILNKLFDETFKELFKGGSAKLVLGEGDELTGNIDINVQ 1082 Query: 283 -------TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 I S GE+ + + + + ++ P +LDEI A LD+ Sbjct: 1083 PPGKKLQNINLMSGGEKVLSAIALLFSILKM-----KPTPFCILDEIEAALDDANVRRYA 1137 Query: 336 RIVTDI--GSQIFM 347 + +Q + Sbjct: 1138 EFLGKFRDNTQFIV 1151 >gi|151940792|gb|EDN59179.1| structural maintenance of chromosomes [Saccharomyces cerevisiae YJM789] gi|190406603|gb|EDV09870.1| structural maintenance of chromosome 2 [Saccharomyces cerevisiae RM11-1a] gi|207345626|gb|EDZ72387.1| YFR031Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256268815|gb|EEU04169.1| Smc2p [Saccharomyces cerevisiae JAY291] Length = 1170 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVITDWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S D+ + G + G IS+ + + + L IN Sbjct: 61 SLQDLIYKRGQAGVTKASVTIVFDNTDKSNSPIGFTNSPQISVTRQVVLGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 L + + + + + Sbjct: 120 HRAPQQSVLQLFQSVQLNINNPNFLIMQG 148 >gi|91202097|emb|CAJ75157.1| hypothetical protein kuste4395 [Candidatus Kuenenia stuttgartiensis] Length = 698 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 2/112 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K+K ++I FR +++ D T+FVG N GKT+ + G FR +++ Sbjct: 1 MKLKNIHIKNFRRLEEVQIDLDDGETVFVGPNNSGKTSATVIFRYFLKGNEFRIHDFSE- 59 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 +RI F + A + L I + L + D + ++ ++ + +L Sbjct: 60 SRIREIDHFGS-ANDKKDLNLPSIDLDLWFKIDPDIEFGRVFSLLPNTLSDL 110 >gi|68051267|gb|AAY84898.1| LD32453p [Drosophila melanogaster] Length = 1190 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 18/125 (14%) Query: 4 RIKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRR 58 ++ +K L + F++Y + FD + T G NG GK+NIL++I F +S + R Sbjct: 11 KMYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRA 70 Query: 59 ASYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIN 106 ++ D+ + G + +G E +IS+ + + L IN Sbjct: 71 SALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVTRQVVVGGKNKFL-IN 129 Query: 107 DVVIR 111 +++ Sbjct: 130 GKLVQ 134 >gi|81428323|ref|YP_395323.1| chromosome seggregation Smc protein [Lactobacillus sakei subsp. sakei 23K] gi|78609965|emb|CAI55012.1| Chromosome seggregation Smc protein [Lactobacillus sakei subsp. sakei 23K] Length = 1186 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L +S F+++A + F T VG NG GK+NI EAI + + R Sbjct: 1 MQLKSLVLSGFKSFADKTEINFSDGLTGIVGPNGSGKSNITEAIRWAMGEQSAKSLRGEK 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ G+ A V +D + E + R L N Sbjct: 61 MPDIIFAGTDLRPQMNRAEVTLNFDNSDHYLNQELDNVTLTRRLFRNG 108 >gi|134108242|ref|XP_777072.1| hypothetical protein CNBB3040 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259757|gb|EAL22425.1| hypothetical protein CNBB3040 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1202 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRG--FRRAS 60 + ++ L + F++Y + F +G NG GK+N+++AISF+ + R Sbjct: 1 MPLQRLELYNFKSYREKQVISFGDVPFVSIIGPNGAGKSNLMDAISFVLGVKSAQLRSTQ 60 Query: 61 YADVTRIG 68 D+ G Sbjct: 61 LKDLIYRG 68 >gi|237756087|ref|ZP_04584664.1| chromosome segregation protein SMC [Sulfurihydrogenibium yellowstonense SS-5] gi|237691759|gb|EEP60790.1| chromosome segregation protein SMC [Sulfurihydrogenibium yellowstonense SS-5] Length = 1172 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 15/124 (12%) Query: 5 IK--IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFR 57 +K I +N+ F++Y L + T VG NG GK+NI ++I F + R R Sbjct: 1 MKTYIDRINVYGFKSYGDRHLTIPLGPGFTAIVGPNGAGKSNIGDSIVFCLGIASARAMR 60 Query: 58 RASYADVTRIGSPSFFSTFARVE------GMEGLADISIKLETRDDRSVRCL-QINDVVI 110 D+ S + +A VE G + +++ + + S + +IN + Sbjct: 61 ALKLTDLI-FSSKDKSAPYAEVEIVFKNLGAFPINSEEVRISRKVELSGKSTYKINGKTV 119 Query: 111 RVVD 114 + + Sbjct: 120 KQQE 123 >gi|237842191|ref|XP_002370393.1| structural maintenance of chromosome domain-containing protein [Toxoplasma gondii ME49] gi|211968057|gb|EEB03253.1| structural maintenance of chromosome domain-containing protein [Toxoplasma gondii ME49] gi|221502848|gb|EEE28562.1| structural maintenance of chromosome domain-containing protein [Toxoplasma gondii VEG] Length = 1523 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + IK + I FR Y + F + VG NG GK+N+L AI+F + G G + ++ Sbjct: 1 MHIKEVTIRGFRTYRHSTTIHFSPGYNCIVGANGSGKSNVLLAIAF-ALGEGGQSSTERR 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 + + + V+ + D + + D+ +R + Sbjct: 60 MLLHEGMNERVSDGSVQVVLANEDRRLCMYDDDEVQIRRV 99 >gi|50553158|ref|XP_503989.1| YALI0E15620p [Yarrowia lipolytica] gi|49649858|emb|CAG79582.1| YALI0E15620p [Yarrowia lipolytica] Length = 1220 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 49/316 (15%), Positives = 106/316 (33%), Gaps = 43/316 (13%) Query: 7 IKFLNISEFRNYASL-RLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 +K + + F++Y R+ D+ + +G NG GK+N+++AISF+ R R Sbjct: 4 LKAIELCNFKSYRDTHRVDLGDSSFSAIIGPNGSGKSNMMDAISFVLGVRSSQLRSTQLK 63 Query: 63 DVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 D+ G S S + VE + D+ T +IN+ V Sbjct: 64 DLIYRGRIMRGEEVSSTQSQEATSAYVLVEYEKSNGDLLKLKRTITPSGTSEYRINNKVT 123 Query: 111 ---------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRM 159 + + L K +++I S + + ++ +ID P + R Sbjct: 124 SSGEYNATMKKENILVKARNFLVFQGDVEQIASQSPQDLSKLIEITSGSIDLKPEYDRLK 183 Query: 160 IDFERLMRGRNRLLTEGYFD----------SSWCSSIEAQMAELGVKINIARVEMINALS 209 + + N + A+ AE + ++ + Sbjct: 184 EELDVQTERSNAAWQRRRTYNAEKKHYVELKDRYDAYTAKAAERDEAVVKQQLWRLWQAQ 243 Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 + E + + + Q + +YA K + +++ Sbjct: 244 KIEDEARDQIEGGDAAIQNAEGAVQEAAQEVENVAAKYASDKKRLLKQERSAKK------ 297 Query: 270 RSDLIVDYCDKAITIA 285 R+D+I+++ + + +A Sbjct: 298 RADVILEHKQQLVPVA 313 >gi|14318554|ref|NP_116687.1| Smc2p [Saccharomyces cerevisiae S288c] gi|730753|sp|P38989|SMC2_YEAST RecName: Full=Structural maintenance of chromosomes protein 2; AltName: Full=DA-box protein SMC2 gi|468040|gb|AAA17416.1| Smc2p [Saccharomyces cerevisiae] gi|836786|dbj|BAA09270.1| chromosome segregation protein SMC2p [Saccharomyces cerevisiae] gi|285811926|tpg|DAA12471.1| TPA: Smc2p [Saccharomyces cerevisiae S288c] Length = 1170 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVITDWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S D+ + G + G IS+ + + + L IN Sbjct: 61 SLQDLIYKRGQAGVTKASVTIVFDNTDKSNSPIGFTNSPQISVTRQVVLGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 L + + + + + Sbjct: 120 HRAPQQSVLQLFQSVQLNINNPNFLIMQG 148 >gi|325830879|ref|ZP_08164263.1| chromosome segregation protein SMC [Eggerthella sp. HGA1] gi|325487286|gb|EGC89729.1| chromosome segregation protein SMC [Eggerthella sp. HGA1] Length = 457 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 87/252 (34%), Gaps = 43/252 (17%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A L + VG NG GK+NI +A+ L + R + Sbjct: 1 MYLKSLVLKGFKSFADRSVLALEPGIIAVVGPNGSGKSNISDAVLWVLGERNAKHLRGQA 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS + S A V+ + +D ++ ++ + R + IN VV R Sbjct: 61 MEDVIFAGSSARKSVGIAEVDLVLDNSDGTLPVDFDEVAVTRRMYRSGESEYLINGVVAR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 +D L S+D I +RR ++ Sbjct: 121 RMDVLDILHDSGLGTGTHSIISQGSLDSILQSKPEDRRALIEEAAG-------------- 166 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENF 221 +++ + R ++++A +A + + + L Q Sbjct: 167 -VLKHKQRKAKSERK----LAAMDAHLARV-KDVAAEVERQLGPLERKAKRARTYQGLAD 220 Query: 222 PHIKLSLTGFLD 233 LSL+ +D Sbjct: 221 ELADLSLSLAVD 232 >gi|313896552|ref|ZP_07830101.1| chromosome segregation protein SMC [Selenomonas sp. oral taxon 137 str. F0430] gi|312974737|gb|EFR40203.1| chromosome segregation protein SMC [Selenomonas sp. oral taxon 137 str. F0430] Length = 1187 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 89/275 (32%), Gaps = 41/275 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L F+++A + + FD T VG NG GK+NI +A+ ++ R R Sbjct: 1 MQLKRLEAYGFKSFADRIVVEFDRGITAVVGPNGSGKSNITDAVRWVLGEQNIRMLRGLR 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ GS S + + I + R R + +ND R Sbjct: 61 SEDIIFAGSTARRALSVAEVVLVFDNRDKTLPIDYEEVVVKRRLYRSGESEVYLNDARCR 120 Query: 112 VVDEL-------NKHLRISWL-VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D H +S + ++ I ERR F + + + Sbjct: 121 IKDIYRLFADTGIGHDGMSIIGQNRLNDILDSRPEERRVFFEETAG---------ITKYR 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + R L E +A + L + R E + L++ + Sbjct: 172 TRKQEALRKLREN----------DADLIRLSDIMYAQRAE-LEPLAAQAEKTSAYRELEA 220 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 + + + +E + L + R + Sbjct: 221 ERRQYRLTSLVQTHEQLVGAQENLMRLLHNDRDEE 255 >gi|168207933|ref|ZP_02633938.1| chromosome segregation protein SMC [Clostridium perfringens E str. JGS1987] gi|170660747|gb|EDT13430.1| chromosome segregation protein SMC [Clostridium perfringens E str. JGS1987] Length = 1185 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A L F T VG NG GK+N+ +++ L + R A Sbjct: 1 MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ +A+V + + L+ D + R L IN+ R Sbjct: 61 MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + +D I SG +RR L+ Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162 >gi|2369708|emb|CAA70738.1| RecN protein [Geobacillus stearothermophilus] Length = 143 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56 Query: 67 IGSPSFFSTFARVEGM 82 G+ A +EG+ Sbjct: 57 FGAEK-----AEIEGL 67 >gi|298385207|ref|ZP_06994766.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] gi|298262351|gb|EFI05216.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] Length = 575 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 50/365 (13%), Positives = 113/365 (30%), Gaps = 42/365 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + + FRNY + + ++T+ +G N VGKTN++ A+ L R S D Sbjct: 1 MILADITLKGFRNYKDAHIKLE-KNTLIIGANDVGKTNLIWAMRLLLD----RSLSDYD- 54 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND---VVIRVVDELNKHL 120 S F+ + L I E + + N+ D + Sbjct: 55 IEPRSSDFYVLEETNSFVILLHFTDITEECVLSKLRGKISDANEMYMSYNASRDPNTGKI 114 Query: 121 RISWLVPSMDRIFSG-LSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRNRLLTEGYF 178 + + + S + R++L+ ++ D + + + RN L Sbjct: 115 SYTIKAGASVELLSDIEAHYYRKYLNI-------KYISCRRDLYAFISKERNFLFQNAKE 167 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 S E ++ + + + E H T ++ + + Sbjct: 168 SRSTQEEEED-------------NTLLQEIKTKLQEANNLIPTLHYISKATNSINSELKE 214 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 + + +D T + +D V+ + + Sbjct: 215 MSIYNNNQDVYFDTNSSNIDKFIDSTSVSSKTNDTPVNIGGDGRLNQ---------IYLS 265 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFMTGTDKSVFDS 357 ++ + I+ ++E AHL ++ L +++ QIF+T + Sbjct: 266 LWATKHEIERPKLEEVSIVCIEEPEAHLHPHQQQKLATYLSNKICGQIFLTSHSPQITSE 325 Query: 358 LNETA 362 + + Sbjct: 326 FSPNS 330 >gi|255658839|ref|ZP_05404248.1| putative ATP-binding protein [Mitsuokella multacida DSM 20544] gi|260849238|gb|EEX69245.1| putative ATP-binding protein [Mitsuokella multacida DSM 20544] Length = 340 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 + IK L + F L + F +F+G+NG+GKT+I++A+ Sbjct: 1 MYIKHLELENFTVLHELNMDFSRGINVFIGENGMGKTHIMKALY 44 >gi|254197330|ref|ZP_04903752.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|169654071|gb|EDS86764.1| conserved hypothetical protein [Burkholderia pseudomallei S13] Length = 536 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 31/228 (13%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRAS 60 R IK + +S F+ + +L L F + +GDN GK++IL AI LS R A Sbjct: 16 AARCHIKKVVLSNFKKFDTLTLDFQPDLNVLIGDNEAGKSSILLAIDLALSGSRSKVEAL 75 Query: 61 YAD-VTRIGSPSFFSTFARVEGMEGLADISIKLETRDD--RSVRCLQINDV------VIR 111 D + R + F + + + + L DD RC +++ Sbjct: 76 GIDTLLRKQAIDHFLSGKKRVADLPALAVEVYLSDLDDWEAQGRCNSLHENTFGLRFTCE 135 Query: 112 VVDELNKHLRISWLVPSM----------DRIFSGLS-MERRRFLDRMV---FAIDPRHRR 157 D+ +R P F G R++ ++ I+ + Sbjct: 136 PSDDYGDEIRQVLSQPEGNFPFEFYAIRFITFGGQPYGGHRKYAQHLLIDSSQINTDYAH 195 Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSS-----IEAQMAELGVKINIA 200 ++ R + + +E + + +L K+++ Sbjct: 196 --REYTRKLYQAHATASERAVHENQYRQAKRSFWTDHLRDLNAKLDVK 241 >gi|39996232|ref|NP_952183.1| chromosome segregation SMC protein [Geobacter sulfurreducens PCA] gi|28375553|emb|CAD66600.1| SMC protein [Geobacter sulfurreducens] gi|39983112|gb|AAR34506.1| chromosome segregation SMC protein, putative [Geobacter sulfurreducens PCA] gi|298505244|gb|ADI83967.1| chromosome segregation ATPase SMC [Geobacter sulfurreducens KN400] Length = 1175 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 68/407 (16%), Positives = 138/407 (33%), Gaps = 70/407 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +KIK L+I F+++ + F T VG NG GK+N+++AI + + R S Sbjct: 1 MKIKRLDIVGFKSFVDKVSFDFQQGITGIVGPNGCGKSNVVDAIRWAMGEQSAKNLRGRS 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDV 108 D+ GS FA +G + I++ R R +N Sbjct: 61 MEDIIFGGSEFRKPLGMAEVSMVFATDDGRVPAKYLSYSEIQITRRLYRDGESEYFLNKT 120 Query: 109 VIRVVD--ELN-----KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161 R++D EL S + + E RRF+ + R+ + Sbjct: 121 PCRLMDITELFMDTGVGARAYSIIEQGKIGMILHSKPEERRFIIEEAAGVTKFKARKQVA 180 Query: 162 FERLMRGRNRLLTEG---YFDSSWCSSIEAQMAELGVKINIARVEM--------INALSS 210 +++ R LL G +S++ Q + + R E+ + ++ Sbjct: 181 LKKIDLTRQNLLRIGDILSEIKRQLNSLQRQ-VKKAERFREYREELREIEIHASVRRFTA 239 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270 L E + E +S L ++ L E R+ + ++ + + + Sbjct: 240 LDAEKERIEGLLREAVSRESTLTADLERRDLELAEHRLA--LAEREKEVVTAQEGLFRQK 297 Query: 271 SDLIV---DYCDKAITIAHGSTGEQKVVL-VG-----IFLAHARL--ISNTTGFAPILLL 319 +D+ + ++ +++V + + + A + +G + + Sbjct: 298 ADIQACESRIEFQRRELSSLERQQERVAVELATAGSQLVAAEEEFARLVEQSGSFAVEVA 357 Query: 320 DE--------------------ISAHLDEDKRNA--LFRIVTDIGSQ 344 E ++AHLDE +R L + + +Q Sbjct: 358 GEEESLQTREMELEEMTGAERELAAHLDEARRELFSLLSEIAQLNNQ 404 >gi|257215870|emb|CAX83087.1| structural maintenance of chromosomes protein 3 [Schistosoma japonicum] Length = 823 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 3/102 (2%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61 + IK + I FR+Y F H I VG NG GK+N +AI LS Sbjct: 1 MYIKKVIIQGFRSYRDQTCPEEFSPHHNIIVGRNGSGKSNFFQAIQFVLSDEYSHLSNQE 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 A VE + +D I + + R + Sbjct: 61 RQNLLHEGTGPRVISAYVEMIFDNSDNRIPFDKNEVSLRRII 102 >gi|23098983|ref|NP_692449.1| chromosome segregation SMC protein [Oceanobacillus iheyensis HTE831] gi|22777211|dbj|BAC13484.1| chromosome segregation SMC protein [Oceanobacillus iheyensis HTE831] Length = 1188 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 62/387 (16%), Positives = 119/387 (30%), Gaps = 61/387 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L F+++ + + F + T VG NG GK+NI +AI ++ + R + Sbjct: 1 MYLKRLESKGFKSFAERIGVDFVSGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ GS + ++ + + + + R R IN R Sbjct: 61 MEDIIFQGSETRKALNVAEVTLVLDNQDQRVPLDYEEVSVTRRVYRSGESEFYINKQPCR 120 Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162 + ++ S L I S + ERR + + + R++ ++ Sbjct: 121 -LKDIIDLFMDSGLGREAFSIISQGKVEEILSSKAEERRTIFEEAAGVLKYKQRKKKAEY 179 Query: 163 ERLMRGRNRLLTEG--YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 + N E Y ++ Q + ++ L + + E Sbjct: 180 KLAETQENLNRVEDIIYEIEQQIDPLKEQ-----AERANRYQQLHGQLRDTEVALLITE- 233 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 I L + K++ K + R + + I L Sbjct: 234 IERIHKEWQVVLQDLEVEKDNQAKQQQQVKSVENRLFEQKQVSSTIDESLEKLQSTLLQA 293 Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + G LLDE S HL E R L + + + Sbjct: 294 T-----------------------EQLEKYEGRKQ--LLDERSKHLGE-NREKLIQQLQE 327 Query: 341 IGSQIFMTG----TDKSVFDSLNETAK 363 I QI + T++S + ++ K Sbjct: 328 IDQQIEVLANDLKTEQSNLADIQQSKK 354 >gi|325677955|ref|ZP_08157597.1| chromosome segregation protein SMC [Ruminococcus albus 8] gi|324110509|gb|EGC04683.1| chromosome segregation protein SMC [Ruminococcus albus 8] Length = 1184 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 101/317 (31%), Gaps = 49/317 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + ++ L + F+++ L F T VG NG GK+NI +A+ ++ + R Sbjct: 1 MYLRGLELQGFKSFPDKTVLSFGKGITAVVGPNGSGKSNISDAMRWVMGEQSSKALRGEK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 + V G + F ++ + DI ++ + + + IN +R Sbjct: 61 MSGVIFHGCETRKESPFAQVTLIIDNEDRALDIDDEVVSVSRKLYKNGDSEYLINGSPVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K + I +G +RR + R++ Sbjct: 121 LKDVNELFMDTGLGKDGYSIVGQGRIADIVNGKGSDRRDIFEEAAGVAKFRYK------- 173 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI--NIARVEMINALSSLIME------- 214 + + + +AEL +I + E L E Sbjct: 174 -----KQEAERRLVEAEDNIARLTDILAELEGRIGPLEKQCEKAKKFKVLDDEKTALEVS 228 Query: 215 -YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 +V K KL+ T ++ + AL +E + + + + + + + D+ Sbjct: 229 VWVTKLEQNRAKLAETEERIKLLNEQYSALSDELSDA--EKQIEEDLRQSAQCAANADDI 286 Query: 274 IVDYCDKAITIAHGSTG 290 D S G Sbjct: 287 SAKIHD----AEMASRG 299 >gi|15829185|ref|NP_326545.1| ABC transporter ATP-binding protein [Mycoplasma pulmonis UAB CTIP] gi|14090129|emb|CAC13887.1| P115-LIKE (Mycoplasma hyorhinis) ABC TRANSPORTER ATP-BINDING PROTEIN [Mycoplasma pulmonis] Length = 979 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 33/223 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 +K+ + F+++A ++L FD +G NG GK+NI +AI L + R + Sbjct: 1 MKLIKIQAHGFKSFAEPIQLSFDGGVAGIIGPNGSGKSNINDAIKWVLGEQSSKSLRGDN 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGLADI-----SIKLETRDDRSVRCLQINDVVI 110 DV GS + S + + + +I E + IND ++ Sbjct: 61 MEDVIFAGSKNVKEMNKASVTLTFDNSNNASSVPHKVFTITRELERGKGSNIYYINDEIV 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159 R ++ S + S I S +RR + V R + + Sbjct: 121 R-YKDIKDIALESGISKSSLAIISQGTVSDIAEASPEDRRGIFEEAAGVSKYKSRKKEAL 179 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 E+ N L + + +E Q+ L + AR+ Sbjct: 180 RKLEKT----NESLEKIQ---TVILELEKQLKPLKNQAEKARI 215 >gi|167752977|ref|ZP_02425104.1| hypothetical protein ALIPUT_01240 [Alistipes putredinis DSM 17216] gi|167659291|gb|EDS03421.1| hypothetical protein ALIPUT_01240 [Alistipes putredinis DSM 17216] Length = 105 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 12/102 (11%) Query: 5 IKIKFLNISEFRNYAS------LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 + + L + FR YA L + F + +G+N GKT I++AI ++ + Sbjct: 1 MYLSILRLWNFRKYAGADNKPGLEIHFQKGVNVLIGENDSGKTAIVDAIRYVLRTQS--- 57 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100 + + F+ E ++ K + D+ + Sbjct: 58 ---GEFIQFEDKDFYQDSDGNRKDEFKINVKEKGKVNDNTAK 96 >gi|91783264|ref|YP_558470.1| ATP-dependent endonuclease [Burkholderia xenovorans LB400] gi|91687218|gb|ABE30418.1| Predicted ATP-dependent endonuclease of the OLD family [Burkholderia xenovorans LB400] Length = 613 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 56/356 (15%), Positives = 116/356 (32%), Gaps = 67/356 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 +++ + I FRN+ + + G+N VGKTN+L A+ + + RR Sbjct: 1 MRLSRIVIKNFRNFKHFDVRLGEHAVVL-GENKVGKTNLLFALRLILDPALPDSSRRLRI 59 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV----VDELN 117 F+ AR E + ++S++ ++ + D ++R Sbjct: 60 --------DDFWDGLARPLKAEDVIEVSVEFRDFENNENLLAVLADHLVRPDPMVARVTY 111 Query: 118 KHLRISWL-------VPSMDRIFSGLSMER------RRFLDRMVFAIDPRHRRRMIDFER 164 ++ + L +F G +E RR++ +F + + R Sbjct: 112 RYQPVQGLEGAPRSEADYEFILFGGGRIENAIGYELRRWMPMDLFPALRDAESDLARWSR 171 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 S + + ++ ALS++ E + Sbjct: 172 -------------------SPLRPLLDRAAKTVDAK------ALSAIAGEVHATTSKIAA 206 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR---KMDSMSRRTLIGPHRSDLIVDYCDKA 281 L+ + DQ + +++A K G + + + R L + Sbjct: 207 LPELSDVVSQVNDQLTVMVGDKHAVKTALGFAPTEPERLLRA---------LQMMIDSGK 257 Query: 282 ITIAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 +A S G V+ + + L H L+ L ++E AHL + ++R Sbjct: 258 RGVAEASLGSANVLYLALKHLEHQYLVDEGERQHTFLAIEEPEAHLHPHLQRLIYR 313 >gi|28375551|emb|CAD66599.1| SMC protein [Geobacillus stearothermophilus] Length = 1187 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++A + + F T VG NG GK+NI +AI ++ + R A Sbjct: 1 MFLKRLDVIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS S ++ +G + + + R R IN R Sbjct: 61 MEDVIFAGSESRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|83945335|ref|ZP_00957683.1| smc protein [Oceanicaulis alexandrii HTCC2633] gi|83851169|gb|EAP89026.1| smc protein [Oceanicaulis alexandrii HTCC2633] Length = 1145 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K L ++ F+++ L DA T +G NG GK+N+LEA+ ++ + + R Sbjct: 1 MKFTQLRLAGFKSFVDPTELRIDAGLTGIIGPNGCGKSNLLEALRWVMGATSAKSLRGGG 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGL-------ADISIKLETRDDRSVRCLQINDV 108 DV G+ S V+ + D+ + +IN Sbjct: 61 MEDVIFAGTDSRPARNHAEVTLVVDNTDKRAPARFNDHDMLEVVRRITRGKGSDYKINGE 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145 +R D L P++ R + + RRR L+ Sbjct: 121 EVRAKDVQLLFADAGTGANSPALVRQGQISELINAKPENRRRVLE 165 >gi|58262882|ref|XP_568851.1| cohesin complex subunit psm1 [Cryptococcus neoformans var. neoformans JEC21] gi|57223501|gb|AAW41544.1| cohesin complex subunit psm1, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1202 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRG--FRRAS 60 + ++ L + F++Y + F +G NG GK+N+++AISF+ + R Sbjct: 1 MPLQRLELYNFKSYREKQVISFGDVPFVSIIGPNGAGKSNLMDAISFVLGVKSAQLRSTQ 60 Query: 61 YADVTRIG 68 D+ G Sbjct: 61 LKDLIYRG 68 >gi|74179914|dbj|BAE36517.1| unnamed protein product [Mus musculus] Length = 173 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 18/123 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + +K + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVI 110 V Sbjct: 120 VNA 122 >gi|45382553|ref|NP_990561.1| structural maintenance of chromosomes protein 2 [Gallus gallus] gi|2500794|sp|Q90988|SMC2_CHICK RecName: Full=Structural maintenance of chromosomes protein 2; Short=SMC protein 2; Short=SMC-2; AltName: Full=Chromosome scaffold protein ScII gi|572692|emb|CAA56767.1| chicken SCII [Gallus gallus] Length = 1189 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 98/270 (36%), Gaps = 34/270 (12%) Query: 5 IKIKFLNISEFRNYAS-LRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MYIKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S D+ + G + G E +I+I + + L IN Sbjct: 61 SLQDLVYKNGQAGVNKATVSITFDNSDKKNSPLGFENNDEITITRQVIVGGRNKYL-ING 119 Query: 108 VVIR--VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161 + V +L + ++ P I G + L+ ++ I+ RM + Sbjct: 120 MNASNNRVQDLFGSVGLNVNNP-HFLIMQGQIT---KVLNMKPTEILAMIEEAAGTRMYE 175 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 +++ + E D I +++ K+ AR + + EN Sbjct: 176 CKKITAHKTIEKKESKLDEIR-RIITEEISPTLEKLKEARASYLE----YQKMTREVENL 230 Query: 222 PHIKLSLTGFLDGKF-DQSFCALKEEYAKK 250 I ++ + D+S ALKE A K Sbjct: 231 RRIYVAFQYVRAEEIKDRSTNALKEAQANK 260 >gi|115403001|ref|XP_001217577.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114189423|gb|EAU31123.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 604 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 80/282 (28%), Gaps = 43/282 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 ++ + F + + VG NG GK+ +L AI+ G+ R S + Sbjct: 102 LERVECYNFMCHDHFHVELGPLINFIVGKNGSGKSAVLTAITLCLGGKASATNRGQSLKN 161 Query: 64 VTRIGSPSFFSTFARVEGMEG---------LADISIKLETRDDRSVRCLQIND----VVI 110 + G S EG + + N Sbjct: 162 FIKEGKESATIVVRIKNQGEGAFMPDDYGKSIIVERHFSKNGTSGFKIKAENGRIMSTKK 221 Query: 111 RVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMI 160 +D + H + + P + + S E+ +F + +D + Sbjct: 222 AELDAIIDHFTLQFDNPMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLDQDY----- 276 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI------ME 214 RL+ + E I ++++ + R E +L + M Sbjct: 277 ---RLIEESADQIEEKLRSREQDVKILKRLSDAAQEKLE-RSEQHQSLRDRVRNVRNQMA 332 Query: 215 YVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDG 254 + Q E + +L L D + A E + L + Sbjct: 333 WAQVEEQERERDALDEELAKADDGIANAEAGVERFDDALREA 374 >gi|319411599|emb|CBQ73643.1| probable SMC1-chromosome segregation protein [Sporisorium reilianum] Length = 1243 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61 + +K L I F++Y + +G NG GK+N+++AISF+ R R + Sbjct: 1 MPLKRLEIENFKSYRGHQVVGPFNAFAAVIGPNGSGKSNLMDAISFVLGVRSAQLRSSQL 60 Query: 62 ADVTRIG 68 D+ G Sbjct: 61 KDLIFRG 67 >gi|261403240|ref|YP_003247464.1| SMC domain protein [Methanocaldococcus vulcanius M7] gi|261370233|gb|ACX72982.1| SMC domain protein [Methanocaldococcus vulcanius M7] Length = 1001 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 97/268 (36%), Gaps = 25/268 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYA 62 + IK + ++ F+++A+ ++ FD +G+NG GK++I EA+ F G F Y Sbjct: 1 MIIKEIKMNNFKSHANSKITFDKGIVAIIGENGSGKSSIFEAVFFALFGVDSNF---KYE 57 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ S ++ I E + + + + + +NK + Sbjct: 58 NIISKNRKS---VRVELDFEVRGDYYKIIREYDNGGKAKLYKNGKLYASSISAVNKTVSE 114 Query: 123 SW-----LVPSMDRIFSGL--------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 L + I G ER + +++ + + +++ Sbjct: 115 VLGIDKNLFLNSIYIKQGEIAKFLMLKPAERMETIAKLLGIDE--FEKCYQKMGEILKEY 172 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 L + S S E ++ ++ K+ + ++ ++ I + ++ +LS Sbjct: 173 KSKLERLEGELSNKKSFEQELRDMEKKLQEK-TDELSKINETIKKMKEELKDAEDELSNI 231 Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKM 257 ++++ L+E L ++ Sbjct: 232 EKKKLQYEKFISKLEER-KTALELNKQK 258 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI---VTDIGSQ 344 S GEQ V + + LA A + ++LDE + LDE++R L I V I Sbjct: 913 SGGEQIAVALSLRLAIANAL--IGNRIECIILDEPTVFLDENRRAKLAEIFKKVKSIPQM 970 Query: 345 IFMT 348 I +T Sbjct: 971 IIIT 974 >gi|126654292|ref|ZP_01726069.1| Smc [Bacillus sp. B14905] gi|126589256|gb|EAZ83417.1| Smc [Bacillus sp. B14905] Length = 1191 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 98/281 (34%), Gaps = 41/281 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++ + + F T VG NG GK+N+ +AI ++ + R + Sbjct: 1 MFLKRLEVIGFKSFAERIGIDFVPGVTAVVGPNGSGKSNVTDAIRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS S F ++ + S + R R +N+ R Sbjct: 61 MEDVIFAGSDSRKPLNFAEVTLILDNTDEQLAFSYTEVSVTRRVYRSGDSEYLLNNQQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + +RR + ++ ++ Sbjct: 121 LKDITDLFMDSGLGKEAFSIISQGRVDEILNSRPDDRRSIFEE---------AAGVLKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222 +R + D + ++ + EL R+ + +S +YVQ Sbjct: 172 --IRKKKAEHKLVETDENLYRVLDI-LHELDS-----RLGPLEMQASSARDYVQMSTELK 223 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEY--AKKLFDGRKMDSMS 261 +++ QS ALKEEY ++ + D + Sbjct: 224 DFDIAILVHDFKNCAQSLRALKEEYTNLSEIEQKQAQDIAT 264 >gi|121533609|ref|ZP_01665436.1| ATPase involved in DNA repair-like [Thermosinus carboxydivorans Nor1] gi|121307600|gb|EAX48515.1| ATPase involved in DNA repair-like [Thermosinus carboxydivorans Nor1] Length = 819 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 30/256 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62 + I+ + + FRN A + L T+ N GKT++ +A+ G R A+ Sbjct: 1 MLIEQIAVKNFRNLADVNLTLQPGITLIKAKNEGGKTSLRKAVEIALFGDP-RSAAAKVY 59 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD-----RSVRCLQINDVVIRVVDELN 117 G S + + E R + L + + E+ Sbjct: 60 QHQTWGQNSLYEIRLDFSADGKRYRLVRDFEARTSVLENLADGKKLTDKKRIEEKLAEIL 119 Query: 118 KH------LRISWLVPSMDRIFSGLSMERRRFLDRM-------VFAIDPRHRRRMIDFER 164 L + R+R +++ V + + + + Sbjct: 120 GLPTATLFLNTVYFSAEEMIQLKNAEELRKRLEEKLSGLDGVVVSKLLKDIDDHLSELTK 179 Query: 165 LMR--GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 ++ +N D +++A++ E+ + A + E Q Sbjct: 180 GLKGTAKNPGPIRRLTDK--LDALQAELREMEETVRQAAAKYAE-----YYETSQAIATL 232 Query: 223 HIKLSLTGFLDGKFDQ 238 +L++ + K+ Q Sbjct: 233 KEQLAIKETENEKYVQ 248 Score = 40.7 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 15/174 (8%) Query: 191 AELGVKINIAR--VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ----SFCALK 244 A+L + R +E I I ++ ++ + L F + + + Sbjct: 636 AKLEAYLATVRYGIEDIETKREEIETCQEQLRALQEEVQVLSILKEWFSEARNNTVAKIT 695 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRS-DLIVDYCDKAITIAHGS---TGEQKVVLVGIF 300 + L + R +G +V DK + GS TG + + Sbjct: 696 SDIGDALLRYFNTLTEGRYNQVGLSPDLSPMVFSADKGDHVDIGSELSTGTRDQLYFATR 755 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRN---ALFRIVTDIGSQIFMTGTD 351 LA IS G P LLLD+ H D D+R AL + + + T D Sbjct: 756 LALIPAISQ--GKKPPLLLDDPFVHFDPDRRAKAFALLKELAKDHQILLFTCGD 807 >gi|20978622|sp|Q96YR5|RAD50_SULTO RecName: Full=DNA double-strand break repair rad50 ATPase Length = 879 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-D 63 + I+ ++I F ++ + F + +G NG GK++I++AISF + R A D Sbjct: 1 MIIRRIDIENFLSHDRSLIEFKGTVNVIIGHNGAGKSSIIDAISFSLFRKSLRDAKKQED 60 Query: 64 VTRIGSPSFFST 75 + + G+ T Sbjct: 61 LIKRGAGRATVT 72 Score = 40.7 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 109/284 (38%), Gaps = 39/284 (13%) Query: 78 RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137 ++G E L + + + + ++ N+ I+ L L++ P+ + Sbjct: 609 EIKGKENKLRELDTLLAKIETAKQKIKQNEEEIKK---LTDELQLLNFDPNRFQQIKRE- 664 Query: 138 MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197 + L++++ I+ + + + ++ + L E D + ++ K+ Sbjct: 665 ---KEVLEKILGEINSKKGELLGK-KEVLENDIKRLEEQIKDYEEKLKNKQKLITAYDKL 720 Query: 198 NIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 R + L + +M V+ ++ SL L +F+ SF ++ ++ K Sbjct: 721 KKLREHLAEDKLQAYLMNTVKSL----VEDSLNSILS-RFELSFTRVEVDFNDK------ 769 Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316 + + T G + + S GE+ + + + LA A+ + N G Sbjct: 770 -NGIYAYTTSGQ------------RLPVNLLSGGERVSIALALRLAIAKSLMNEVG---F 813 Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357 L+LDE + +LDE ++ L I+ QI + D+ + + Sbjct: 814 LILDEPTVNLDEYRKKELIDIIRSTVEVVPQIIVVTHDEELLQA 857 >gi|67922685|ref|ZP_00516189.1| similar to ATPases [Crocosphaera watsonii WH 8501] gi|67855467|gb|EAM50722.1| similar to ATPases [Crocosphaera watsonii WH 8501] Length = 387 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 I+ L+I +R + + AQ + VGDN GKT+ LEAI L Sbjct: 2 IRDLSIKNYRCFEDFYVDGLAQVNLIVGDNNSGKTSFLEAIYLL 45 >gi|302672055|ref|YP_003832015.1| hypothetical protein bpr_I2700 [Butyrivibrio proteoclasticus B316] gi|302396528|gb|ADL35433.1| hypothetical protein bpr_I2700 [Butyrivibrio proteoclasticus B316] Length = 374 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63 IK + I++FR+ L + + + VGDN GKT +LEAI L S + Sbjct: 4 IKSIEINQFRSIKKLSVSGFSNINLIVGDNNSGKTTLLEAIQLLFAKSQLGSIKPVIDQR 63 Query: 64 VTRI-GSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQI--NDVVIR-----VVD 114 SF+ +F + E + + R LQI N+ VI + Sbjct: 64 TVLSPDKSSFYVSFIKMFNAAESRDQLEFDISAESKRGFLRLQISGNEKVISGEEALQIS 123 Query: 115 ELNKHLRISW-----LVPSMDRIFSGL 136 L+ + + +P +IF G Sbjct: 124 SLSSRQKTQYKREAAFLPENAKIFIGS 150 >gi|121535547|ref|ZP_01667355.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1] gi|121305875|gb|EAX46809.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1] Length = 396 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 59/373 (15%), Positives = 110/373 (29%), Gaps = 76/373 (20%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------RR 58 +I+ L++ +R LRL T F+G NG GK+ +L+ +FL+ RR Sbjct: 7 RIEELSVKNYRALKDLRLNGITPLTAFLGPNGSGKSTVLDVFAFLAECFSSGLRKAWDRR 66 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---------RCLQINDVV 109 + ++ G+ + I+ L + + Sbjct: 67 GRFKELRTRGASGPIVIELKYRENSQSPRITYHLAIDEGPRGPFVAEEWLQWRRKSKGKP 126 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + +D N + M F + E+ D + + F + R Sbjct: 127 FKFLDFKNGEGMVV--SGDMPDEFDHRTDEKLESADMLA-------VNTLGQFAK--HPR 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 L I + + A Q E P +LS+T Sbjct: 176 VANLRR--------------------FITGWYLSYLTA----DNTRTQPEAGPQERLSVT 211 Query: 230 G--------FLDGKFDQSFCALKEEYAKKLFDGRKMD---SMSRRTLIGPHRSDLIVDYC 278 G +L + + + K++ K+D R L+ D Sbjct: 212 GDNLPNVIQYLKEQCPDRLQTILDILVKRVPRLEKVDSEIMADGRLLL--QIKDAPF--- 266 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 ++ I S G K++ L T ++ ++E HL L Sbjct: 267 ERPILARFASDGTLKMLAYLTIL-------YGTDLPQLVGIEEPENHLYPHLLRGLAEEC 319 Query: 339 TD--IGSQIFMTG 349 + + +QI +T Sbjct: 320 REASVSTQIMITT 332 >gi|110803965|ref|YP_699003.1| chromosome segregation protein SMC [Clostridium perfringens SM101] gi|110684466|gb|ABG87836.1| chromosome segregation protein SMC [Clostridium perfringens SM101] Length = 1185 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A L F T VG NG GK+N+ +++ L + R A Sbjct: 1 MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ + ++ G + +K+ + RS IN+ R Sbjct: 61 MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLEVKVTRKLFRSGESEYLINNSPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + +D I SG +RR L+ Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162 >gi|67476422|ref|XP_653814.1| structural maintenance of chromosomes protein [Entamoeba histolytica HM-1:IMSS] gi|56470807|gb|EAL48428.1| structural maintenance of chromosomes protein [Entamoeba histolytica HM-1:IMSS] Length = 1023 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 13/131 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63 I+ +++ F + L+L +Q VG+NG GK+ IL A++ + F R +D Sbjct: 9 IERIDLENFMCHRHLQLDLCSQVNFIVGENGSGKSAILVALAICFGAKATFTNRGKRVSD 68 Query: 64 VTRIGSPSFFSTFARVEGMEGLAD---------ISIKLETRDDRSVRCLQIN-DVVIRVV 113 + + G + EG D I K+ S + +N RVV Sbjct: 69 IVKNGETHCKVSVYLRNRGEGAMDKEKYGDTIIIERKISKDGGSSYKIYSMNSGEKPRVV 128 Query: 114 DELNKHLRISW 124 + + Sbjct: 129 GHKSSDVNEIL 139 >gi|330816398|ref|YP_004360103.1| ATP binding protein [Burkholderia gladioli BSR3] gi|327368791|gb|AEA60147.1| ATP binding protein [Burkholderia gladioli BSR3] Length = 465 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 29/43 (67%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 I+ L++ +R + ++ + FD + T+ + NG GKT+IL+A++ Sbjct: 6 IRRLSLKGYRCFDAIDIDFDERLTVLIASNGAGKTSILDALAV 48 >gi|284164623|ref|YP_003402902.1| chromosome segregation protein SMC [Haloterrigena turkmenica DSM 5511] gi|284014278|gb|ADB60229.1| chromosome segregation protein SMC [Haloterrigena turkmenica DSM 5511] Length = 1196 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 102/309 (33%), Gaps = 71/309 (22%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK L + F+++ ++ F T+ G NG GK+NI++A+ F L+ RG R Sbjct: 1 MYIKALVLDNFKSFGRKTKIPFYEDFTVITGPNGSGKSNIIDAVLFALGLARTRGIRAEK 60 Query: 61 YADVTRI-----GSPSFFSTFARVEGMEGLADISIKL----------------ETRDDRS 99 D+ G S A VE + +D ++ E R R Sbjct: 61 LTDLIYNPGHDDGDSSGGPREATVEVILDNSDGTLTRSQVVNAAGSEDVGDVDEIRIRRR 120 Query: 100 VRCL--------QINDVVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRR 142 V+ +ND + + ++ L + + P + I + RR Sbjct: 121 VKETEDNYYSYYYLNDRAVN-LSDIQDLLAQAGVTPEGYNVVMQGDVTEIINMTPHARRE 179 Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 +D + + + +E ++ E ++I R Sbjct: 180 IIDEIAGVAEFD-------------------AKKEDAFEELEVVEERIDEAELRIEEKRD 220 Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLF-----DG 254 ++ L+ + ++ K G+ + + + A EE A +L Sbjct: 221 R-LDQLADERRQAMRYRRLRREKEEYEGYKKASELEEKRDELADAEETAAELEGELEDLQ 279 Query: 255 RKMDSMSRR 263 R++D Sbjct: 280 RELDERQGT 288 >gi|229117671|ref|ZP_04247041.1| DNA repair protein recN [Bacillus cereus Rock1-3] gi|228665763|gb|EEL21235.1| DNA repair protein recN [Bacillus cereus Rock1-3] Length = 583 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 41/210 (19%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 61 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ +R+V +D ++ Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQTVY 171 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189 D+E+L + L + I+ Q Sbjct: 172 ADYEKLKKQLKSLSENEQQMAHRLDLIQFQ 201 >gi|110667658|ref|YP_657469.1| chromosome segregation protein [Haloquadratum walsbyi DSM 16790] gi|109625405|emb|CAJ51829.1| DNA double-strand break repair rad50 ATPase [Haloquadratum walsbyi DSM 16790] Length = 898 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ + + F+ YA L TI G NG GK+++LEA F G + D+ Sbjct: 1 MRFDHITLEHFKPYADASLDLQDGVTIIHGLNGSGKSSLLEACFFALYGARALDETLDDI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104 A +E A ++ R RS +Q Sbjct: 61 VTTDEDD-----ATIELTFSHAGSQYHIKRRLRRSGDRIQ 95 >gi|269986901|gb|EEZ93177.1| SMC domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 382 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 13/143 (9%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62 IK + + F+++A ++ F G NG GK+N+++A+ F+ G R Sbjct: 4 IKQVELDNFKSFAGHIKFDFVNGFNAIAGANGSGKSNLIDALLFVFGGSSKKEMRSDILT 63 Query: 63 DVTRIG-----SPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVV 113 D+ G ++ G+ + + + + D++ + + + Sbjct: 64 DLIFNGGKNGRQAEHAKVNVILDNSKKEFHGIEENEVSISRKVDKNGKSVYRVNGKASTR 123 Query: 114 DELNKHLRISWLVPSMDRIFSGL 136 +E+ L + I Sbjct: 124 EEVLNVLSLVKFRQDGFNIIPQG 146 >gi|261419392|ref|YP_003253074.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC61] gi|319766207|ref|YP_004131708.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC52] gi|261375849|gb|ACX78592.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC61] gi|317111073|gb|ADU93565.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC52] Length = 1187 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++A + + F T VG NG GK+NI +AI ++ + R A Sbjct: 1 MFLKRLDVIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS S ++ +G + + + R R IN R Sbjct: 61 MEDVIFAGSESRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|206895293|ref|YP_002246874.1| probable DNA double-strand break repair Rad50 ATPase, putative [Coprothermobacter proteolyticus DSM 5265] gi|206737910|gb|ACI16988.1| probable DNA double-strand break repair Rad50 ATPase, putative [Coprothermobacter proteolyticus DSM 5265] Length = 972 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 47/342 (13%), Positives = 102/342 (29%), Gaps = 47/342 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR------ 57 +K K L ++ F +L L F + G NG GK++ILEA+ F G+ R Sbjct: 1 MKPKKLEVTNFLGLKNLSLEFPEQGVFVITGPNGSGKSSILEAMYFALYGKTMRLPGDVK 60 Query: 58 -RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 A + S + ++ + ++ E + ++ + + Sbjct: 61 NTAVINRNAQHSSDNPARAVVSFTFVQQGKEYLVRRELVRGVHKKDDVSHNAWLYDLSGH 120 Query: 117 NKHLR-------------ISWLVPSMD------------RIFSGLSMERRRFLDRM---- 147 + I L P + + +RR+ D + Sbjct: 121 AGLVPETGVVKVNNKVEDILGLTPEVFAATVFLGQGKITELVEAKPDKRRKIFDAILETD 180 Query: 148 ----VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + + R + + + R +L +G + Q E +K I RV+ Sbjct: 181 HLVKMQELVRGDLRELQTKVKALLERKEILEQGPSAKDLEKEL--QDVEENMKQVIERVQ 238 Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 + + + E + + + T LKE + + S+ Sbjct: 239 VFEQAAKELEEVQRIKG----DMENTEADIAALRSEIEKLKEAAERDTRIRLIKELRSKY 294 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 + + L +K S +++ + + + Sbjct: 295 AELEQWQIQLEELTKNKDKLGKDLSNWSERINELKLRVVQIE 336 >gi|71983122|gb|AAZ57430.1| structural maintenance of chromosome 3 [Toxoplasma gondii] Length = 1491 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + IK + I FR Y + F + VG NG GK+N+L AI+F + G G + ++ Sbjct: 1 MHIKEVTIRGFRTYRHSTTIHFSPGYNCIVGANGSGKSNVLLAIAF-ALGEGGQSSTERR 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 + + + V+ + D + + D+ +R + Sbjct: 60 MLLHEGMNERVSDGSVQVVLANEDRRLCMYDDDEVQIRRV 99 >gi|15669512|ref|NP_248322.1| purine NTPase [Methanocaldococcus jannaschii DSM 2661] gi|18202578|sp|Q58718|RAD50_METJA RecName: Full=DNA double-strand break repair rad50 ATPase gi|1591962|gb|AAB99331.1| purine NTPase [Methanocaldococcus jannaschii DSM 2661] Length = 1005 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 4/105 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + +K + ++ F+++ + R+ F+ +G+NG GK++I EA+ F G G + Sbjct: 3 MILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAGSNFNYDT-I 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109 G S + ++ + I E R L N Sbjct: 62 ITKGKKS---VYVELDFEVNGNNYKIIREYDSGRGGAKLYKNGKP 103 Score = 41.0 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331 ++ V + +TI + S GEQ V + + LA A + ++LDE + +LDE++R Sbjct: 900 EVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANAL--IGNRVECIILDEPTVYLDENRR 957 Query: 332 NALFRI---VTDIGSQIFMT 348 L I V I I +T Sbjct: 958 AKLAEIFRKVKSIPQMIIIT 977 >gi|15921404|ref|NP_377073.1| hypothetical protein ST1147 [Sulfolobus tokodaii str. 7] gi|15622190|dbj|BAB66182.1| 352aa long hypothetical protein [Sulfolobus tokodaii str. 7] Length = 352 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 25/141 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----------- 55 I+ L+I F++ ++++ + + VG NG GKT I+E++ + Sbjct: 2 IRELSIQNFKSLENVKIELG-KINVLVGPNGSGKTAIIESLLLIRNLVSKILGMSPFGLW 60 Query: 56 -------FRRASY---ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105 F + V I S F+ V + +I + + +RS + I Sbjct: 61 WGYDNVVF--SKDLGRNIVIEINSDEFYYLL-EVHRERFVKEILMMKDLNLERSEDKVII 117 Query: 106 NDVVIRVVDELNKHLRISWLV 126 N+ + ++E L + L Sbjct: 118 NNEEYKGLNEEYSALNLVNLA 138 >gi|303231138|ref|ZP_07317878.1| chromosome segregation protein SMC [Veillonella atypica ACS-049-V-Sch6] gi|302514269|gb|EFL56271.1| chromosome segregation protein SMC [Veillonella atypica ACS-049-V-Sch6] Length = 1184 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L + F+++A + F T +G NG GK+NI +A+ ++ S R R Sbjct: 1 MQLLRLELKGFKSFADKTVVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQR 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ G+ S + +G D+ ++ R R IN R Sbjct: 61 AEDIIFSGTEKRKPMSAAEVTLVFDNADGQLDVDMQEVAITRRIYRTGESEFLINKRTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + ERR ++F R I+ E Sbjct: 121 LKDIHLLLADTGLGKDSMAIIGQNRIDAILNSKPEERR-----LIFEDVAGISRFKINKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 +R ++IE Q+ L K Sbjct: 176 DALRRIASTDRNMERVRDIMATIEEQLGPLAEK 208 >gi|239904715|ref|YP_002951453.1| DNA repair protein RecN [Desulfovibrio magneticus RS-1] gi|239794578|dbj|BAH73567.1| DNA repair protein RecN [Desulfovibrio magneticus RS-1] Length = 542 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 90/271 (33%), Gaps = 49/271 (18%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M ++IK L + + L L F + G+ G GK+ I+ A++FL+ + Sbjct: 1 MIEVLRIKNLALID-----DLELEFGPGLNVLSGETGAGKSFIISAVNFLTGEKMH---- 51 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 D+ R G V G E ++ ++ E D + + D + Sbjct: 52 -TDLVRAGRDKAVVEALFVLGDE---ELILRRELVADTGRSRVYVGDALASRETLAALRP 107 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 ++ V + + LD F DP L+ +NRL E Sbjct: 108 KLLLHVSQHGQGRLLQPAFQAALLD--GFLPDPA----------LLTEKNRLARE----- 150 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + E+ I ++A ++ + E Q F H +++ L G+ D+ Sbjct: 151 ---------LGEVAAAIRD-----LDAKAAGLEEKRQFLEFQHAEIAKVNPLPGEEDELV 196 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271 L + RK R L R Sbjct: 197 AR-----KAALAESRKAAQALGRALECIERQ 222 >gi|255539797|ref|XP_002510963.1| Structural maintenance of chromosome, putative [Ricinus communis] gi|223550078|gb|EEF51565.1| Structural maintenance of chromosome, putative [Ricinus communis] Length = 1176 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 94/270 (34%), Gaps = 29/270 (10%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA+ + FD G NG GK+N+L++I F ++ + R A Sbjct: 1 MHIKEICLEGFKSYATRTVIQGFDPFFNAITGLNGSGKSNVLDSICFVLGITNLQQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G + G E ++I++ + + L IN Sbjct: 61 NLQELVYKQGQAGITKATVSIVFANSDRTRSPLGYEDHSEITVTRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 + + N + V + + + + L+ ++ ++ RM + + Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQGRIT--KVLNMKPPEILSMLEEAAGTRMYETK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + + D ++ ++ K+ R++ + + + Sbjct: 178 KYAALKTLEKKQSKVDE-INKLLDQEILPALEKLRKERMQYMQ----WANGNAELDRLKR 232 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 ++ K + E+ K+ + Sbjct: 233 FCIAYEYVQAEKIRDTAVGEVEQIKAKISE 262 >gi|209522791|ref|ZP_03271349.1| SMC domain protein [Arthrospira maxima CS-328] gi|209496840|gb|EDZ97137.1| SMC domain protein [Arthrospira maxima CS-328] Length = 1044 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 8 KFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + F +Y L F HT G NG GK+++LEAI++ G R + D+ + Sbjct: 22 QKLTLKNFLSYRDASLDFSGLHTACICGPNGAGKSSLLEAIAWSIWGHS-RAGTEDDLIQ 80 Query: 67 IGSPSFFSTFARV 79 IG F + Sbjct: 81 IGETQMRVDFIFI 93 >gi|188996121|ref|YP_001930372.1| chromosome segregation protein SMC [Sulfurihydrogenibium sp. YO3AOP1] gi|188931188|gb|ACD65818.1| chromosome segregation protein SMC [Sulfurihydrogenibium sp. YO3AOP1] Length = 1172 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 13/120 (10%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 I +N+ F++Y L + T VG NG GK+NI ++I F + R R Sbjct: 5 IDRINVYGFKSYGDRHLTIPLGPGFTAIVGPNGAGKSNIGDSIVFCLGIASARAMRALKL 64 Query: 62 ADVTRIGSPSFFSTFARVE------GMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114 D+ S + +A VE G + +++ + + S + +IN ++ + Sbjct: 65 TDLI-FSSNDKSAPYAEVEIVFKNLGAFPINSEEVRISRKVELSGKSTYKINGKTVKQQE 123 >gi|169827095|ref|YP_001697253.1| chromosome partition protein smc [Lysinibacillus sphaericus C3-41] gi|168991583|gb|ACA39123.1| Chromosome partition protein smc [Lysinibacillus sphaericus C3-41] Length = 1191 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 98/281 (34%), Gaps = 41/281 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++ + + F T VG NG GK+N+ +AI ++ + R + Sbjct: 1 MFLKRLEVIGFKSFAERIGIDFVPGVTAVVGPNGSGKSNVTDAIRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS S F ++ + S + R R +N+ R Sbjct: 61 MEDVIFAGSDSRKPLNFAEVTLILDNTDEQLAFSYTEVSVTRRVYRSGDSEYLLNNQQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + +RR + ++ ++ Sbjct: 121 LKDITDLFMDSGLGKEAFSIISQGRVDEILNSRPDDRRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222 +R + D + ++ + EL R+ + +S +YVQ Sbjct: 172 --IRKKKAEHKLVETDENLYRVLDI-LHELDS-----RLGPLEMQASSARDYVQMSTELK 223 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEY--AKKLFDGRKMDSMS 261 +++ QS ALKEEY ++ + D + Sbjct: 224 DFDIAILVHDFKNCAQSLRALKEEYTNLSEIEQKQAQDIAA 264 >gi|95928315|ref|ZP_01311063.1| SMC protein-like [Desulfuromonas acetoxidans DSM 684] gi|95135586|gb|EAT17237.1| SMC protein-like [Desulfuromonas acetoxidans DSM 684] Length = 814 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 ++I +++ +++ L F + G NGVGK+ + EAI + G Sbjct: 1 MQILSIHLKNIKSHRDTTLNFAPGINVLSGPNGVGKSTVFEAIGYALFG 49 Score = 39.9 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 19/170 (11%) Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-FDQSFC 241 + +M L +I + + A+ I+ + K L FL + F++ Sbjct: 619 LKGLAQEMTRLAAEI-----DALKAIEQEIIAKQAQIKAYGEKEELVKFLRNRVFNKVSA 673 Query: 242 ALKEEYAKKL--FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI------TIAHGSTGEQK 293 +L E + +++ + ++ + + D A S G+ Sbjct: 674 SLSERFREEISQRANQIYRIIAEVDEELAWGDNYQIVLRDMADGELRERADDQLSGGQTM 733 Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 +V + LA + I I DE +++LD +R L I Sbjct: 734 SAVVALRLAMLQTIGAR-----IAFFDEPTSNLDAARRENLAHAFRAIDV 778 >gi|323479028|gb|ADX78467.1| chromosome partition protein SMC [Enterococcus faecalis 62] Length = 308 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 >gi|302918377|ref|XP_003052644.1| hypothetical protein NECHADRAFT_35358 [Nectria haematococca mpVI 77-13-4] gi|256733584|gb|EEU46931.1| hypothetical protein NECHADRAFT_35358 [Nectria haematococca mpVI 77-13-4] Length = 1092 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 16/219 (7%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61 I +++ F Y + + VG NG GK++++ AI L G R S Sbjct: 75 AIVRVSVENFVTYEKAEFLPGPHLNMVVGPNGTGKSSLVCAIC-LGLGYSPKHLGRAGSV 133 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119 + + G + + + + IK++ R +++ + +N + V L + Sbjct: 134 KEFVKHGKDTATIEIELQKRPKDRRNYVIKVQIRREQNTQKWWMNGKETNHKTVQTLMRK 193 Query: 120 LRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI-DFERLMRGRNRLL 173 L+I +P R+ + L + A P + L + + L Sbjct: 194 LKIQVDNLCQFLPQD-RVVEFAACTPVDLLHETLRAAAPEEMLDWQKQLQDLHKDKKELA 252 Query: 174 TEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSS 210 D+ ++E Q + V R E+ + + Sbjct: 253 EAVSTDTETLKNLENRQQGLQADVDRIREREEIQEQIKN 291 >gi|194016711|ref|ZP_03055324.1| DNA repair protein RecN [Bacillus pumilus ATCC 7061] gi|194011317|gb|EDW20886.1| DNA repair protein RecN [Bacillus pumilus ATCC 7061] Length = 578 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 81/256 (31%), Gaps = 37/256 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L I F L + F+ T+ G+ G GK+ +++A+S L GRG ++ R Sbjct: 2 LAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRG-----SSEFVR 56 Query: 67 IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 G G++ ++ I ++ +IN ++ Sbjct: 57 YGEKKAELEGLFLVPAADHPVFALCEEHGIDATDEMMILRRDMNNNGKSICRINGKLV-T 115 Query: 113 VDELNKHLRISW-LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 + L + R+ + D LD+ + ++ Sbjct: 116 ISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAE---EIAPALSQYQEAYEQ--- 169 Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 T+ S E +M R++++ +E Q E KL Sbjct: 170 -YTKTAQKLKQLSENEQEMV--------HRLDLLQ-FQLEEIEAAQLEPGEDEKLQEERH 219 Query: 232 LDGKFDQSFCALKEEY 247 +++ F +L+ Y Sbjct: 220 QISNYEKIFSSLQNAY 235 >gi|4587293|dbj|BAA76704.1| RecN [Deinococcus radiodurans] Length = 546 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 88/284 (30%), Gaps = 38/284 (13%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 ++ L I L L F G+ G GK+ I++A+ L GR + D+ Sbjct: 15 RLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGR-----ANHDLI 69 Query: 66 RIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVR-------CLQINDVVIRVVDELN 117 R G T +G E AD S +L + + R ++ + + Sbjct: 70 RSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHW 129 Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL----- 172 +H +S L P+ R + + A R+ + R R R Sbjct: 130 QHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQRERARQIDLLA 189 Query: 173 -----LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 ++E D + +++ L + I ++ +E + + L Sbjct: 190 FQVQEISEVSPDPGEEEGLNTELSRLSN------LHTIAQAAAGGVELLSDGDLNAAGLI 243 Query: 228 LTGFL----DGKFDQSFCALKEEYAKKLF-----DGRKMDSMSR 262 K+D++ L+ E L G D Sbjct: 244 GEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEG 287 >gi|325300494|ref|YP_004260411.1| SMC domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324320047|gb|ADY37938.1| SMC domain protein [Bacteroides salanitronis DSM 18170] Length = 441 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 11/72 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----------LSPGR 54 ++IK + I FR + +FD++ + +G+N GKT +L A+ L G Sbjct: 1 MRIKDITIRNFRGFTERSFIFDSRMNVVLGNNTTGKTTLLHAVQIALGAFLQELTLVTGC 60 Query: 55 GFRRASYADVTR 66 R +DV R Sbjct: 61 A-RNTKDSDVVR 71 >gi|312127774|ref|YP_003992648.1| chromosome segregation protein smc [Caldicellulosiruptor hydrothermalis 108] gi|311777793|gb|ADQ07279.1| chromosome segregation protein SMC [Caldicellulosiruptor hydrothermalis 108] Length = 1177 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 110/311 (35%), Gaps = 37/311 (11%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + IK+L I F+++ R+ F T VG NG GK+NI +AI + + R A Sbjct: 1 MYIKWLEIYGFKSFCEKTRIEFQKGITAIVGPNGCGKSNITDAIRWALGEQSLKILRAAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ F + G+ I + + R RS IN + R Sbjct: 61 QEDLIFAGTEKRKSQGFAEVSICFDNSSGVLPIDYQEVVITRRLFRSGESEFFINKIPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + +ER R + ++R+ + E Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVERYRIFEEACGITKYKYRKE--ETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R ++ ++ M EL ++ + + + + + + ++ Sbjct: 179 RKLK----------ATEENIQRLQDVMFELRTQLEEIKPD-VQKAKTYLQINQKLQSLKK 227 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 K L G+ F +++ ++L + + + +++ L +D + + Sbjct: 228 EKYVYEYNLTGRRYHDFLIKEKQLNEELEKLIHLRRELKES---INQNKLQMDLLTQEVE 284 Query: 284 IAHGSTGEQKV 294 S E K Sbjct: 285 KTRLSYDEIKS 295 Score = 37.2 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 44/224 (19%) Query: 157 RRMIDFERLMRGR------------NRLLTEGYFDSSWCSSIEAQMAELGV--------- 195 + ++ + ++ + NR + A ++ELG Sbjct: 930 HDLENYMKNIKEKYFETFNEEINTSNREVFWSKEKEDELERCTAALSELGEVKLYSIDQE 989 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255 K R++ + + + + L L + F E+ K LF Sbjct: 990 KRLQERMQFLQKQIEDLQKTTDELK------RLISHLGKNMKEIFLENFEKI-KSLFSEI 1042 Query: 256 KMDSMSRRT----LIGPHRS---DLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAHARLI 307 ++ + LIG D+ V K + I S GE+ +V + + A Sbjct: 1043 FIELFGGGSCDLKLIGQDGELGVDIDVKPPGKKLQNINLLSGGEKALVAIALLFAFL--- 1099 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348 T + + +LDEI + LDE + + ++ +Q I +T Sbjct: 1100 --TFKGSLLCILDEIDSSLDEANVQRFAQYIKNLNNQSQIIIVT 1141 >gi|291230578|ref|XP_002735243.1| PREDICTED: structural maintenance of chromosomes 1A-like [Saccoglossus kowalevskii] Length = 1251 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 86/268 (32%), Gaps = 44/268 (16%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63 +K L + F++Y + T +G NG GK+N+++AISF+ + R +D Sbjct: 4 LKLLEVENFKSYKGRQIIGPFKPFTAIIGPNGAGKSNLMDAISFVLGDKASNLRVKKLSD 63 Query: 64 VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--------- 111 + +G P+ F E + K S +IN VI Sbjct: 64 LIHGAPVGKPAATRAFVTAVYAE-EDETEKKFTRTVIGSSTEFRINGKVISFAQYSSELE 122 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 + L K +++ I ER + + + R+ Sbjct: 123 KLGILVKARNFLVFQGAVESIAMKNPKERTQLFEEI--------------------SRSG 162 Query: 172 LLTEGY--FDSSWCSSIEA-QMAELGVK-INIARVEMINALSSLIMEYVQ--KENFPHIK 225 L E Y + + E Q K I R E L E Q KE+ + Sbjct: 163 ELKESYESRKAEMLKAEEDTQFNYHKKKGIAAERKE--AKLEKDEAERYQKLKEDLSAAQ 220 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFD 253 L L F +Q EE K + Sbjct: 221 LELQLFKLYHNEQDIDRYNEELKSKNKE 248 >gi|322375789|ref|ZP_08050300.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C300] gi|321279057|gb|EFX56099.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C300] Length = 899 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 +KI+ + + F+N+ + + F T VG NG GKT I +AI G Sbjct: 1 MKIRKILLYNFKNFRNETVIDFSDGITFLVGPNGYGKTTIFDAIELGLTG 50 >gi|251781987|ref|YP_002996289.1| chromosome partition protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390616|dbj|BAH81075.1| chromosome partition protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1181 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 105/287 (36%), Gaps = 45/287 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEMQGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ ++ + A I++E R+ I+ +R Sbjct: 61 MPDVIFAGTENRSPLNYAQVAVVLDNSDHFIKEAKEVIRIERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + ++ ++ Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVK---------INIARVEM-INALS 209 + L + + ++ Q+ L + ++ +R ++ ++ L Sbjct: 172 TRKKETQSKLNQTQDNLDRLDDIIYELDNQLVPLEKQAKVAQKFLDLDASRKQLQLDILV 231 Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + I K++ L + + +++ +Y ++L R+ Sbjct: 232 TDIALDQAKQSDDRAALESVKQDLSTYYANRQSMEADY-QQLKQKRQ 277 >gi|225619730|ref|YP_002720987.1| D repair and genetic recombination protein [Brachyspira hyodysenteriae WA1] gi|225214549|gb|ACN83283.1| D repair and genetic recombination protein [Brachyspira hyodysenteriae WA1] Length = 569 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 22/201 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYAD 63 +K+L I F L++ F + + G+ G GK+ I+ A+ ++ +G A+ Sbjct: 2 LKYLEIRNFVLIDKLKINFSSGFNVLTGETGAGKSIIISALELITGEKGSTRMVGANGDR 61 Query: 64 VTRIGSPSFFSTFARVEGMEGLADIS-------IKLETRDDRSVRCLQIN-DVVIRVVDE 115 + G+ S S+ V+ +I IK E D + N V + + E Sbjct: 62 LIVSGNFSLQSSAYIVKNKLKEWNIEINNDELNIKREITKDGKSKSFINNVGVKVAELKE 121 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP--RHRRRMIDFERLMRG----- 168 L + +F+ F D + D ++ +L++ Sbjct: 122 LGDLIVDIHGQHEHQSLFN--PANHLNFYDSYLNIDDKLENYKNHYNKLTKLIKQHNEIS 179 Query: 169 --RNRLLTEGYFDSSWCSSIE 187 +N +L E F IE Sbjct: 180 QNKNNILKEKSFLEYAIDEIE 200 >gi|195583502|ref|XP_002081556.1| GD25652 [Drosophila simulans] gi|194193565|gb|EDX07141.1| GD25652 [Drosophila simulans] Length = 1179 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 19/125 (15%) Query: 5 IKIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRR 58 + +K L + F++Y + FD + T G NG GK+NIL++I F +S + R Sbjct: 1 MYVKKLVLDGFKSYGRRTEIEGEFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRA 60 Query: 59 ASYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIN 106 ++ D+ + G + +G E +IS+ + + L IN Sbjct: 61 SALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVTRQVVVGGKNKFL-IN 119 Query: 107 DVVIR 111 +++ Sbjct: 120 GKLVQ 124 >gi|238796705|ref|ZP_04640211.1| SMC domain protein [Yersinia mollaretii ATCC 43969] gi|238719436|gb|EEQ11246.1| SMC domain protein [Yersinia mollaretii ATCC 43969] Length = 572 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 52/379 (13%), Positives = 123/379 (32%), Gaps = 71/379 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR------R 58 +KI ++ + ++RN+A + A++++ +G N VGKTN++ A+ L + Sbjct: 1 MKIDYVYLHQYRNFAEAYINL-AKNSLVIGSNDVGKTNMIHALRLL-LDKSLSEADIEPT 58 Query: 59 ASYADVTRIG--SPSFFSTFARVEGMEGLADISIKLETRDDR----SVRCLQINDVVIRV 112 A + G + F A E + +K R + N Sbjct: 59 ARDFHCGQNGMQADYFMIRVAFSEVTQDAVLSQLKGFVSATGHFFLEFRATRANHSYEIA 118 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR-GRNR 171 + + PS + + ++ D R +R + Sbjct: 119 AGYDLSAMEVI---PSRHYLK----------------HLHLKYIHSQRDLVRYIRSEKRH 159 Query: 172 LLT--EGYFDSSWCSSIEAQMAELGVKINI-----ARVEMINALSSLIMEYVQKENFPHI 224 LL + D + + Q+ L + + + + + + +Q + H+ Sbjct: 160 LLRLAQESRDDAQVDADAIQLQTLARLLESVNSGVKNLHYVAEATRDLNDELQALSHHHM 219 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 +++ D + E++ ++L +G + V Sbjct: 220 GYNVS------LDTGAIGI-EQFIEQLE-------------LGASTNGSRVMLGGDGRNN 259 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGS 343 +L+ ++ A + L + I ++E AHL ++ L +++ + Sbjct: 260 Q---------ILLALWKAKSVLEHDQDSEVVIYCVEEPEAHLHPHQQRKLASYLISALPG 310 Query: 344 QIFMTGTDKSVFDSLNETA 362 Q +T + S + + Sbjct: 311 QTIVTTHSPQIAASYHPNS 329 >gi|298704768|emb|CBJ28364.1| SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) [Ectocarpus siliculosus] Length = 1544 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 17/126 (13%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + I+ + I F++YA+ + FD Q G NG GK+NIL+AI F +S R + Sbjct: 1 MHIREVVIDGFKSYATRTVLQGFDQQFNAITGLNGSGKSNILDAICFVLGISNLSQVRVS 60 Query: 60 SYADVTRIGSPSFFS------TFARVE------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + + F+ V+ G E +++I + + L Sbjct: 61 NLQELVYKQGQAGVTKASVTLVFSNVDKKGSPMGYEEFDEVTITRQVVIGGKNKYLINGR 120 Query: 108 VVIRVV 113 V + Sbjct: 121 TVQQSQ 126 >gi|167630241|ref|YP_001680740.1| chromosome partition protein smc, putative [Heliobacterium modesticaldum Ice1] gi|167592981|gb|ABZ84729.1| chromosome partition protein smc, putative [Heliobacterium modesticaldum Ice1] Length = 1190 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 28/220 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + ++ F+++A ++ T+ VG NG GK+N+ +AI ++ R R + Sbjct: 1 MVLKRIELNGFKSFADKTEILLSPGLTVVVGPNGSGKSNVADAIRWVLGEQSPRSLRGSK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS ++ +G+ + + T R R +N R Sbjct: 61 MEDVIFAGSDRRKPVGMAEVSLTLDNEKGMLPVDYREVTVTRRVFRSGESDYLLNRSPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + +D + S ERR ++ + R+R R + Sbjct: 121 LRDLQELFSDTGLGREGISIIGQGRVDEVLSSRPEERRALIEEAAGIV--RYRNRKREAV 178 Query: 164 RLMRG-RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 + + L+ G ++ Q+A + + +AR Sbjct: 179 KKLEETEQHLIRLG----DIIGELQQQLAAISSQAELARR 214 Score = 39.5 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 14/165 (8%) Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +A + R + ++ +M K + + G + +F Q+F + + + Sbjct: 993 LAIEEEERLQERAQFLSRQHEDLMA--AKGTLEQVIAEIEGIMVRRFSQAFEEINSRFGE 1050 Query: 250 ---KLFDGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 LF G + + + L+ L K + ++ S GE+ + + + A Sbjct: 1051 VFADLFQGGRAELVLTAPGDLLTTGVDILAQPPGKKLVNLSLLSGGERALTAIALLFALL 1110 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 + +P +LDEI A LDE R + + SQ + Sbjct: 1111 QF-----RPSPFCVLDEIEAALDEANVARFGRYLQRLSEKSQFIV 1150 >gi|115376056|ref|ZP_01463302.1| RecF/RecN/SMC N terminal domain, putative [Stigmatella aurantiaca DW4/3-1] gi|310817715|ref|YP_003950073.1| RecF like family protein [Stigmatella aurantiaca DW4/3-1] gi|115366971|gb|EAU65960.1| RecF/RecN/SMC N terminal domain, putative [Stigmatella aurantiaca DW4/3-1] gi|309390787|gb|ADO68246.1| RecF like family protein [Stigmatella aurantiaca DW4/3-1] Length = 368 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 68/386 (17%), Positives = 127/386 (32%), Gaps = 72/386 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + L+I+ +R+ + L T+ VG NG GKTN+ A+ L Sbjct: 1 MTVTQLDIAGYRSVKRMVLPVHP-VTVVVGANGSGKTNLYRALHLL-------------- 45 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + AR EG + R+ + +++ + + DEL L Sbjct: 46 ----QAAAEGRLARTLAEEGGTPSVVWAGPREHKQPVRMKVG---VTLGDELAYELSC-- 96 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDP----RHRRRMIDFERLM----RGRNRLLTEG 176 I ER +F +DP H + R + + R L + Sbjct: 97 ------GIVPKDPSER-----FSLFVLDPEVKEEHLWALSGGRRAVLMERKDRTAFLRDS 145 Query: 177 YFD----SSWCSSIEAQMAELGVKINIARVEMINA-LSSLIMEYVQKENF------PHIK 225 + S E+ + +L R+ I LS+ + + + P I Sbjct: 146 EGKRVVFPTQLWSAESVLDQLAEPQRFPRLTEIQRTLSAWRFYHQFRTDLEAPARQPQIG 205 Query: 226 LSLTGFLDGKFD--QSFCALKEE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 + T D + ++E + L D + + G L + Sbjct: 206 VRTTALAHDGRDLAAALATIREIGDRRGLERALEDAFPGAELEVKAPQGRFSLSLHLPGL 265 Query: 279 DKAITIAHGSTGEQK-VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + + + S G + + L+ L+ P L L+E L D L R+ Sbjct: 266 SRPMEASELSDGTLRYLCLLAALLS--------PRPPPFLALNEPETSLHPDLLGPLARL 317 Query: 338 V--TDIGSQIFMTGTDKSVFDSLNET 361 V SQI++T +S+ ++++ Sbjct: 318 VVAASKHSQIWITTHAESLAEAVSHR 343 >gi|218666509|ref|YP_002425241.1| chromosome segregation protein SMC [Acidithiobacillus ferrooxidans ATCC 23270] gi|28374984|emb|CAD66591.1| SMC protein [Acidithiobacillus ferrooxidans] gi|218518722|gb|ACK79308.1| chromosome segregation protein SMC [Acidithiobacillus ferrooxidans ATCC 23270] Length = 1150 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 103/319 (32%), Gaps = 56/319 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ + + F+++ S R+ F+A + +G NG GK+N ++A+ ++ S R R + Sbjct: 1 MRLSAIILQGFKSFRESTRIQFNANPVVIIGPNGCGKSNTVDAVRWVLGESSARQLRGGT 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLAD----------ISIKLETRDDRSVRC-LQINDV 108 +DV G S ++ A VE +D I + DR +IN Sbjct: 61 LSDVISNGGGSRPAASVATVELRFDNSDGAAPGAFAGAAEISVRRSLDRKGDGHYRINGA 120 Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLS------MERRRFL 144 R D E RI P R + ERRR Sbjct: 121 RCRRRDVADLFLGTGLGGNAYAIVEQGTIGRIVDARPDDLRAILEEAGGISRYKERRRET 180 Query: 145 DRMVFAIDPRHRRRM--------IDFERLMRGR--NRLLTEGYFDSSWCSSIEAQMAELG 194 + + H +R+ ++RL R + L + +A Sbjct: 181 TQRIAE-TREHLQRLYDIHGEMDGQWQRLQRQAESAQRLRALRVEERQWQWWS--LALRV 237 Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTGFLDGKFDQSFCALKEEYAKKL 251 + R + + S L EY ++E L D + + A + E Sbjct: 238 DALEAERRQSLEQRSRLQDEYRREERLLDAVTQSLDQLRAEDRRMQEDIAAAQGELYAVQ 297 Query: 252 FDGRKMDSMSRRTLIGPHR 270 M+ R R Sbjct: 298 ARQSDMEHQLREQQAALQR 316 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + T+ S GE+ + + + A L AP +LDE+ A LD+ + Sbjct: 1037 GKRNATLQQLSGGEKALTAIALVFALFHL-----NPAPFCILDEVDAPLDDANVGRFCHL 1091 Query: 338 VTDIGSQI 345 V + +Q Sbjct: 1092 VQKMAAQT 1099 >gi|56419728|ref|YP_147046.1| chromosome segregation ATPase [Geobacillus kaustophilus HTA426] gi|56379570|dbj|BAD75478.1| chromosome segregation ATPase (SMC) [Geobacillus kaustophilus HTA426] Length = 1187 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++A + + F T VG NG GK+NI +AI ++ + R A Sbjct: 1 MFLKRLDVIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS S ++ +G + + + R R IN R Sbjct: 61 MEDVIFAGSESRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|290968316|ref|ZP_06559858.1| DNA repair protein RecN [Megasphaera genomosp. type_1 str. 28L] gi|290781675|gb|EFD94261.1| DNA repair protein RecN [Megasphaera genomosp. type_1 str. 28L] Length = 568 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 90/270 (33%), Gaps = 25/270 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I F L + F TIF G+ G GK+ +L+A+ L+ R + A R Sbjct: 2 LQSLHIRHFALIEELHIHFGDGLTIFTGETGAGKSILLDAMGMLAGKR-----ASASFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLA-------------DISIKLETRDDRSVR-CLQINDVVIRV 112 G+ SF A E D + + + R+ R IN ++ + Sbjct: 57 QGTESFVVEGAFFFSNENEVLQQVLAANHIEAEDGQLVISRQFRRNGRGTTLINGTLVPL 116 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM---VFAIDPRHRRRMIDFERLMRGR 169 ++ + D + LD + + + + R+++ Sbjct: 117 TAVKQIGEQLLDIHGQYDNRLIFDAAYHVEILDSLTPALTEARRAYDLAYKTWARIVKEI 176 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSL 228 L E + S +E Q+ E+ + + L I E+ +I+ L Sbjct: 177 KTLQKEESEKARLLSVLEFQIKEIEAAQLREGED--DELEHHIKTAAHSEHIKNNIQDML 234 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 F G+ + E + L D Sbjct: 235 FAFEGGERQKGLLEQLETVQRVLLKTASYD 264 >gi|226355769|ref|YP_002785509.1| chromosome partition protein [Deinococcus deserti VCD115] gi|226317759|gb|ACO45755.1| putative chromosome partition protein [Deinococcus deserti VCD115] Length = 1096 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 72/235 (30%), Gaps = 24/235 (10%) Query: 7 IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 + + + F+++A RL F + +G NG GK+N++EAI ++ + R R Sbjct: 2 LHSITLQGFKSFADRTRLEFGPGVSAVIGPNGSGKSNVVEAIRWVTHQARARELRAGRGT 61 Query: 63 DVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 ++ GS A V+ + + L R R Q ++ LR Sbjct: 62 ELIFHGSGGKAPLGLAEVQLELSTPEGRVNLSRRIYRDGAAEQDLGGRPVRARDVQGALR 121 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR----HRRRMIDFERLMRGRNRLLTEGY 177 + L P + + V + R + + R + R Sbjct: 122 GTGLGPGGLAVIGQGEVS-------GVVQAEGRTLLGYVQEAAGLSRAVTARQETEARLR 174 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 + + + R + L Q + L+L L Sbjct: 175 DADTALEQLRL--------VLNEREAAVVRLEKAAQAARQHRDLSARVLTLEDAL 221 >gi|319938734|ref|ZP_08013098.1| DNA repair protein RecN [Streptococcus anginosus 1_2_62CV] gi|319811784|gb|EFW08050.1| DNA repair protein RecN [Streptococcus anginosus 1_2_62CV] Length = 552 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 93/279 (33%), Gaps = 37/279 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IG-------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G +G++ ++ I+ E +IN ++ + Sbjct: 57 HGASKAEIEGLFAIEQSKALVEIFEQQGLDMTEELIIRREIFQ-NGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + + D+ F D F + +++ + +L + Sbjct: 116 VLRAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDDAFFKLKADYQQTFDQYRQLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALS-----SLIMEY 215 + + + +E Q+AE+ +N R +++N + Sbjct: 176 LTIQKNQEENKARIDMLEYQIAEIEAANLKAGEDLALNQERDKLLNHKQIADTLTNAYAM 235 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 + E F + + D + + + A +E A L + Sbjct: 236 LDDEEFSSLANVRSAMNDMEAIEDYDATYKEIATNLSES 274 >gi|299144131|ref|ZP_07037211.1| putative SMC family, C- domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518616|gb|EFI42355.1| putative SMC family, C- domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1182 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEA-ISFLSPG--RGFRRAS 60 + +K L I F+++A ++ F+ + T VG NG GK+NI +A + L + R + Sbjct: 1 MYLKTLYIQGFKSFAQKTKIEFNNKITGIVGPNGSGKSNISDAMMWVLGETSIKSLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ----INDVVIR 111 DV G+ F + + I + R R L+ IN+V R Sbjct: 61 MEDVIFSGTDEKKPLGFAEVTIVFDNSDKKLPIEYTEVSVTRRMYRSLESEFLINNVKCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|158521730|ref|YP_001529600.1| chromosome segregation protein SMC [Desulfococcus oleovorans Hxd3] gi|158510556|gb|ABW67523.1| chromosome segregation protein SMC [Desulfococcus oleovorans Hxd3] Length = 1204 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 26/166 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++K L I+ F+++ + F VG NG GK+NI++A+ ++ + R S Sbjct: 1 MRLKRLEINGFKSFPEKATISFPPGIFSIVGPNGCGKSNIIDALKWVMGEQSAMQLRGKS 60 Query: 61 YADVTRIGSPS-FFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS A V E + L +I I R +N Sbjct: 61 MDDVIFAGSNEKAPVNMAEVSLVLANDNGSAPEELRHLTEIMITRRLYRS-GEREYLLNK 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSG--------LSMERRRFLD 145 R+ D N L S I G ERR F++ Sbjct: 120 QPCRLKDIYNIFLGSGMGARSYSIIQQGNIGAITDASPEERRMFIE 165 >gi|329770216|ref|ZP_08261606.1| chromosome segregation protein SMC [Gemella sanguinis M325] gi|328837022|gb|EGF86666.1| chromosome segregation protein SMC [Gemella sanguinis M325] Length = 1184 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 91/266 (34%), Gaps = 31/266 (11%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 +K+ + I+ F+++ F VG NG GK+NI++AI L + R +S Sbjct: 1 MKLSKVEITGFKSFQKKTTFEFKNNLIGVVGPNGSGKSNIIDAIRWVLGEQSAKNLRGSS 60 Query: 61 YADVTRIGSPSFFS-TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 DV G+ FA V A+ S +++ R R+ D + ++ Sbjct: 61 MKDVIFSGTEDVKRKNFAEVAVTFSNAEKSCEIKRRLYRNGDSEYFLDDKRAKLKDITNV 120 Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 + I + ++RR ++ ++ ++ + N Sbjct: 121 YLDLGINKESYSIITQGKVEDIISSKPVDRRAIIEE---------ASGVLKYKNKKKETN 171 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L + + + +E+ R E++ + +Y+ K L Sbjct: 172 AKLEKTNDN---LMRLNDIFSEISS-----RYEILEEQKNKTQKYLDYSRELEEKDILIN 223 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRK 256 + Q+ AL + K + ++ Sbjct: 224 IYNISEYQNKLALLLDEKKVIQAEKE 249 >gi|325688245|gb|EGD30264.1| DNA repair protein RecN [Streptococcus sanguinis SK72] Length = 552 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P +G E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169 + + D+ LD + R++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGRYQETFDRYRSLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L + +E QMAE+ ++ R ++N Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221 >gi|294679144|ref|YP_003579754.1| OLD family nuclease [Rhodobacter capsulatus SB 1003] gi|294477960|gb|ADE87347.1| nuclease, OLD family [Rhodobacter capsulatus SB 1003] Length = 594 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 67/358 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63 ++I + I+ F N++ L + + VG+N VGK+N + A+ L PG R Sbjct: 1 MRISRVRIANFANFSDLDVETGESI-VIVGENKVGKSNFIRALQLILDPGLSER---DRQ 56 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + G F+ + + +ISI L T D R L HL Sbjct: 57 L---GLEHFWDGLGE-DKLGEAIEISIDLTDFTNDPR-----------------LMAHLN 95 Query: 122 ISWLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + P G M R RF + DP + D+E ++ G Sbjct: 96 DCVVDP-------GPPMVARLTYRFQPKANLGRDP---ESLADYEYVI--------FGGD 137 Query: 179 DSSW--------CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSL 228 D ++ Q+A + ++I R + L + + ++ I+ + Sbjct: 138 DPDMAIGSSLRRMLPLDVQVALRDAEKDLSIWRNSPLRPLIEQLATSLDEDARDEIQEQV 197 Query: 229 -TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL-IGPHRSD-----LIVDYCDKA 281 + A + + +L TL + P R D L + + A Sbjct: 198 NEAQAELAGHAEVVATAQRISDRLIAIAGEQHAVPLTLGLAPTRVDALLRSLRLLIDNGA 257 Query: 282 ITIAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 +I S G ++ + + L RL+++ +++E AHL + ++R Sbjct: 258 RSIGDASLGTANLIFLALKSLELDRLVTDGERDHTFFVVEEPEAHLHPHVQRLVYRYF 315 >gi|227550769|ref|ZP_03980818.1| chromosome segregation protein Smc [Enterococcus faecium TX1330] gi|227180087|gb|EEI61059.1| chromosome segregation protein Smc [Enterococcus faecium TX1330] Length = 1191 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 100/285 (35%), Gaps = 38/285 (13%) Query: 8 KFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYAD 63 K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R D Sbjct: 2 KRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGKMPD 61 Query: 64 VTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDELNKH 119 + GS + A V + +D + LE + R + I K Sbjct: 62 IIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCRLKD 121 Query: 120 LRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 ++ +L + + IFS +RR + + +++R E+ + Sbjct: 122 IQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAEQKL 179 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLIMEY 215 L+ +E Q+ L + + A E + + + I Sbjct: 180 FETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLQLKETLTQTDVSLMVAEIKTA 235 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 236 KKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 280 >gi|50307571|ref|XP_453765.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642899|emb|CAH00861.1| KLLA0D16005p [Kluyveromyces lactis] Length = 1170 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D Q G NG GK+NIL+AI F+ R Sbjct: 1 MKVEELIIDGFKSYATRTVITDWDPQFNAITGLNGSGKSNILDAICFVLGISSMATVRAQ 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E A ISI + + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFNNSDTSNSPIGFESHAKISITRQIILGGVSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + L + + + + + Sbjct: 120 HRAQQQTVLQLFQSVQLNINNPNFLIMQG 148 >gi|1237015|dbj|BAA10977.1| ORF4 [Bacillus subtilis] Length = 1188 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60 + +K L++ F+++ + + F T VG NG GK+NI +AI ++ G R R Sbjct: 1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGGQSARSLRGGK 60 Query: 61 YADVTRIGSPS 71 D+ GS S Sbjct: 61 MEDIIFAGSDS 71 >gi|308173557|ref|YP_003920262.1| chromosome condensation and segregation SMC ATPase [Bacillus amyloliquefaciens DSM 7] gi|307606421|emb|CBI42792.1| chromosome condensation and segregation SMC ATPase [Bacillus amyloliquefaciens DSM 7] Length = 1186 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 35/269 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L++ F+++ + + F T VG NG GK+NI EAI L R R Sbjct: 1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITEAIRWVLGEQSARSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRV 112 D+ GS S ++ + I + + R RS + + Sbjct: 61 MEDIIFAGSDSRKRLNLAEVTLTLDNEDHFLPIDYHEVSVTRRVYRSGESEFLINNQQCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L + I S + +RR + + Sbjct: 121 LKDIIDLFMDSGLGKEVFSIISQGKVEEILSSKAEDRRSIFEEA--------AGVLKYKT 172 Query: 164 RLMRGRNRLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 R + N+L +E Q+ L ++ +IA + + L + Sbjct: 173 RKKKAENKLFETQDNLNRVEDILHELEDQVEPLKIQASIA-KDYLEKKKELEHVEIALTA 231 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 F +L G G ++ A +EE A+ Sbjct: 232 FDIEELH--GRWSGLKEKVQAAKEEELAE 258 >gi|312793350|ref|YP_004026273.1| chromosome segregation protein smc [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180490|gb|ADQ40660.1| chromosome segregation protein SMC [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1177 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 54/307 (17%), Positives = 104/307 (33%), Gaps = 41/307 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + IK+L I F+++ R+ F T VG NG GK+NI +AI + + R A Sbjct: 1 MYIKWLEIYGFKSFCEKTRIEFQKGITAIVGPNGCGKSNITDAIRWALGEQSLKILRAAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ F + G+ I + + R RS IN + R Sbjct: 61 QEDLIFAGTEKRKSQGFAEVSICFDNSSGVLPIDYQEVVITRRLFRSGESEFFINKIPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + +ER R + ++R+ + E Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVERYRIFEEACGITKYKYRKE--ETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R ++ + Q+ E+ + A + + + ++ Sbjct: 179 RKLK---ATEENIQRLQDVIFELSTQLEEIKPDVQKA--------KTYLQINQKLQSLKK 227 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 K L GK F +++ ++L + + +++ L +D + Sbjct: 228 EKYVYEYNLTGKSYHDFLTKEKQLNEELEKLIHLRRELEE-----SINQNKLQMDLLIQQ 282 Query: 282 ITIAHGS 288 + S Sbjct: 283 VEKTRLS 289 Score = 38.0 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 35/171 (20%) Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K R++ + + + + + L + F ++F +K +++ F+ Sbjct: 989 EKRLQERMQFLQKQIEDLQKTT--DELKRLISHLEKNMKEIFLENFEKIKSLFSEIFFE- 1045 Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAI--------------TIAHGSTGEQKVVLVGIF 300 L G DL + D + I S GE+ +V + + Sbjct: 1046 ----------LFGGGSCDLKLIGQDGELGVDIDVKPPGKKLQNINLLSGGEKALVAIALL 1095 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348 A T + + +LDEI + LDE + + ++ +Q I +T Sbjct: 1096 FAFL-----TFKGSLLCILDEIDSSLDEANVQRFAQYIKNLNNQSQIIIVT 1141 >gi|296420428|ref|XP_002839772.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635976|emb|CAZ83963.1| unnamed protein product [Tuber melanosporum] Length = 1245 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 113/312 (36%), Gaps = 37/312 (11%) Query: 6 KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61 K+ L + F++Y + F D+ T +G NG GK+N ++AISF+ + R A Sbjct: 8 KLVRLELFNFKSYKGHQTIYFGDSYFTSIIGPNGSGKSNCMDAISFVLGIKSSQLRSAHL 67 Query: 62 ADVTRIG---------------SPSFFSTFARVEGMEGLADISIK-----LETRDDRSVR 101 D+ G + + + +G E L +I +++ V Sbjct: 68 RDLIYRGRVLKTSGPKKPSDPKTAWVMAVYLNDDGEEQLWKRAITSAGASEYRINNKQVT 127 Query: 102 CLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRM 159 +Q ND + L K ++ I S + R ++++ +++ + R Sbjct: 128 AVQYNDALEEEN-ILIKARNFLVFQGDVEAIASQSPKDLTRLIEQISGSLEFKAEYERLK 186 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE---LGVKINIARVEMINALSSLIMEYV 216 ++ E+ N L ++ + Q E K + ++ + + + Sbjct: 187 MEQEKAAETSNFNLNRRRGINAEIKQYQEQKKEAENYQAKQDEKHEAVVTHILWKLFHFQ 246 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 + ++ + + F E+Y KL + ++ +++ R G + + + Sbjct: 247 RSVELNKQEIE----RHQEELKEFRRAHEKYYGKLEEAKREQALANR---GVSKQERAIK 299 Query: 277 YCDKAITIAHGS 288 +K + S Sbjct: 300 RREKEVEEKESS 311 >gi|295099735|emb|CBK88824.1| SMC proteins Flexible Hinge Domain./RecF/RecN/SMC N terminal domain. [Eubacterium cylindroides T2-87] Length = 526 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 59/393 (15%), Positives = 130/393 (33%), Gaps = 79/393 (20%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRR-A 59 + +K + + F+++A + F+ T VG NG GK+N+ +AI L + R + Sbjct: 1 MFLKRIELQGFKSFADKTIIQFENDITGIVGPNGCGKSNVNDAIRWVLGEQSVKSLRSGS 60 Query: 60 SYADVTRIGSP-----SFFSTFARVEGMEGL-----ADISIKLETRDDRSVRCLQINDVV 109 S AD+ GS + + + +I I + + + IN Sbjct: 61 SMADIIFSGSEYRKPVNMAKVTLVFDNSTKVFDSPFEEIEITRQLQRSTNEASYFINKTP 120 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMI 160 R + ++ + + L I + +RR + + Sbjct: 121 CR-LKDITDLVMDTGLGRDSLSIITQGNISSFADAKPEDRRLLFEE---------AAGVS 170 Query: 161 DFERLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216 +++ + L + + +E Q+ L + + + Sbjct: 171 KYKKRKKISLNKLNQTKENLDRLQDILDELERQLTPLSRQ-AKKAEKFLKL--------- 220 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 +E I++S+ + +S + E+ K LF+ + + + +L + DL + Sbjct: 221 -REELSKIEISVL----AEEIESLNSQIEKLQKSLFENKTIYTSKEASL---SKQDLDIM 272 Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP-----ILLLDEISAHLDEDKR 331 K + A + I+ G L++ LDE ++ Sbjct: 273 DLRKEM------------------YALDKQINELQGEYTKAMEESYQLEKRKVELDEKRK 314 Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364 A+ + T D++ F+ + A+F Sbjct: 315 YAMSMADNAKRKEQLKTLVDEARFEYFDHKARF 347 >gi|300174121|ref|YP_003773287.1| hypothetical protein LEGAS_1820 [Leuconostoc gasicomitatum LMG 18811] gi|299888500|emb|CBL92468.1| conserved hypothetical protein [Leuconostoc gasicomitatum LMG 18811] Length = 528 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----- 55 M+N I +++ F+ + F+ + +G+N GK++IL+AI + +G Sbjct: 1 MSND-YISKISLKNFKKFKESEFEFNPNLNVIIGENAAGKSSILQAIDIVLNQKGIDDRR 59 Query: 56 FRR 58 FR Sbjct: 60 FRN 62 >gi|262375657|ref|ZP_06068889.1| chromosome segregation protein SMC [Acinetobacter lwoffii SH145] gi|262309260|gb|EEY90391.1| chromosome segregation protein SMC [Acinetobacter lwoffii SH145] Length = 1150 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 105/295 (35%), Gaps = 54/295 (18%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F T VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLHFKDNRTAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60 Query: 61 YADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G+ F +T+ ++ G + + + + +R + +N Sbjct: 61 MQDVIFTGTAKRKPVGMASVELRFDNTYGKLGGAYNAYN-ELAVRRQVNRDGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P R++ + RRR Sbjct: 120 SKCRRRDITDIFLGTGLGPRSYAIIEQGMINRLVDAKPDEMRVYIEEAAGVSRYQARRR- 178 Query: 144 LDRMVFAIDP--RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 + +D ++ R+ D ++ + + L + +E Q+ + ++I + Sbjct: 179 --ETMLHLDHTTQNLSRLGDIASELKSQLKTLKRQSESAIQYKELEGQIRTIKIEILSFQ 236 Query: 202 VEMINALSS--LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 E L + ENF ++ LT + + E + + + Sbjct: 237 CEQSQRLQEEYTLEMNTLGENFKLVRSELTS-----VEHDLGSTSELFQRLIQQS 286 >gi|194755383|ref|XP_001959971.1| GF11775 [Drosophila ananassae] gi|190621269|gb|EDV36793.1| GF11775 [Drosophila ananassae] Length = 688 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 18/124 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + +K L + F++Y + FD + T G NG GK+NIL++I F +S + R + Sbjct: 1 MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + +G E +IS+ + + L IN Sbjct: 61 ALQDLVYKNGQAGITKATVTIVFDNTNAAQCPQGYEKCREISVTRQVVVGGKNKFL-ING 119 Query: 108 VVIR 111 +++ Sbjct: 120 KLVQ 123 >gi|166363849|ref|YP_001656122.1| chromosome segregation protein [Microcystis aeruginosa NIES-843] gi|166086222|dbj|BAG00930.1| chromosome segregation protein [Microcystis aeruginosa NIES-843] Length = 1176 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 26/166 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + +S F+++ + F T+ G NG GK+NIL+A+ F L+ +G R Sbjct: 2 VYIKKVELSHFKSFGGTTPIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61 Query: 61 YADVT-------RIGSPSFFSTFARVEGMEGLADISIKLETR-----DDRSVRCLQINDV 108 D+ R + + S + + D + R IN Sbjct: 62 LPDLVNHSYNSQRHSTEASVSVTFDIADIPDATDRDWTVSRRLKVAKGGSYTSTYYINGE 121 Query: 109 VIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145 V EL+ L + P + RI S + ERR +D Sbjct: 122 TC-TVSELHDQLNRLRIYPEGYNVVLQGDVTRIISMNAKERREIID 166 >gi|49481879|gb|AAT66651.1| DNA repair and genetic recombination protein [Geobacillus thermoleovorans] Length = 573 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFXIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + R Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L S E QMA R++++ +E E + Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|47213556|emb|CAF91830.1| unnamed protein product [Tetraodon nigroviridis] Length = 1110 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 27/236 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + I F++YA + FD G NG GK+NIL++I FL S R + Sbjct: 1 MHIKSIIIEGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTHVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQGGITKATVSITFDNSNKSQSPLGFETHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM + + Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQ 217 ++ + E ++ ++ K+ R + L I + Sbjct: 178 KISAQKTIEKKEAKLKEIQT-ILDEEITPTMQKLQEERSSYLEYQKLMREIQHLTR 232 >gi|328710132|ref|XP_001946952.2| PREDICTED: structural maintenance of chromosomes protein 2-like [Acyrthosiphon pisum] Length = 1660 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 18/142 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK L I F++Y + L FD + G NG GK+NIL+AI F +S R + Sbjct: 1 MHIKSLVIDGFKSYGKRVELNNFDPEFNAITGLNGTGKSNILDAICFTLGISAMNTIRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARV---------EGMEGLADISIKLETRDDRSVR-CLQIND- 107 + DV + G + + + I + + +IN Sbjct: 61 TMQDVIYKSGQAGVHTATVTITFDNKDKSRSAPHYTHNDEIVISREVGMGSKNTYRINGL 120 Query: 108 -VVIRVVDELNKHLRISWLVPS 128 V + + + L+++ P Sbjct: 121 TVPAKKIMDFFNSLQMNVNNPH 142 >gi|324993382|gb|EGC25302.1| DNA repair protein RecN [Streptococcus sanguinis SK405] gi|324995305|gb|EGC27217.1| DNA repair protein RecN [Streptococcus sanguinis SK678] gi|325690174|gb|EGD32178.1| DNA repair protein RecN [Streptococcus sanguinis SK115] Length = 552 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P +G E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169 + + D+ LD + R++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGRYQETFDRYRSLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L + +E QMAE+ ++ R ++N Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221 >gi|170289417|ref|YP_001739655.1| chromosome segregation protein SMC [Thermotoga sp. RQ2] gi|281412999|ref|YP_003347078.1| chromosome segregation protein SMC [Thermotoga naphthophila RKU-10] gi|170176920|gb|ACB09972.1| chromosome segregation protein SMC [Thermotoga sp. RQ2] gi|281374102|gb|ADA67664.1| chromosome segregation protein SMC [Thermotoga naphthophila RKU-10] Length = 1170 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++K L + F+++ L F + T VG NG GK+NI++AI ++ + R + Sbjct: 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASE 60 Query: 61 YADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 D+ GS + S + + E +I++ E + +N +R+ D Sbjct: 61 KFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELK-RTGENTYYLNGSSVRLKD 116 >gi|15922571|ref|NP_378240.1| hypothetical protein ST2240 [Sulfolobus tokodaii str. 7] gi|15623361|dbj|BAB67349.1| 494aa long hypothetical protein [Sulfolobus tokodaii str. 7] Length = 494 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +KI + FR+ +++RL + VG NG GKTN+L AI Sbjct: 1 MKIINFYVDNFRSLSNIRLEDLGGLNVIVGYNGYGKTNLLTAIYLF 46 >gi|125974387|ref|YP_001038297.1| SMC protein-like protein [Clostridium thermocellum ATCC 27405] gi|125714612|gb|ABN53104.1| SMC protein-like protein [Clostridium thermocellum ATCC 27405] Length = 688 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + + L I FR+ + F + VG N GK+NI++A+ Sbjct: 1 MFVSKLLIRNFRSIEKESIDFRPGKNVLVGKNNSGKSNIVKALDL 45 >gi|156083559|ref|XP_001609263.1| hypothetical protein [Babesia bovis T2Bo] gi|154796514|gb|EDO05695.1| hypothetical protein BBOV_IV000970 [Babesia bovis] Length = 171 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 K+ + + F N+ +L + + G NG GK+ I++ ++ G G + Sbjct: 32 KVIRVQLVNFLNHENLVVNCSPYLNMIFGMNGQGKSAIVQGMALCFGGYGHSAGRDTALA 91 Query: 66 RIGSPSFFST---FARVE 80 + FARVE Sbjct: 92 HYIKDYHLRSGPNFARVE 109 >gi|312877060|ref|ZP_07737033.1| SMC domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796201|gb|EFR12557.1| SMC domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 935 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 57/311 (18%), Positives = 107/311 (34%), Gaps = 37/311 (11%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + IK+L I F+++ R+ F T VG NG GK+NI +AI + + R A Sbjct: 1 MYIKWLEIYGFKSFCEKTRIEFQKGITAIVGPNGCGKSNITDAIRWALGEQSLKILRAAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ F + G+ I + + R RS IN + R Sbjct: 61 QEDLIFAGTEKRKSQGFAEVSICFDNSSGVLPIDYQEVVITRRLFRSGESEFFINKIPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + +ER R + ++R+ + E Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVERYRIFEEACGITKYKYRKE--ETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R ++ + Q+ E+ + A + + + ++ Sbjct: 179 RKLK---ATEENIQRLQDVIFELSTQLEEIKPDVQKA--------KTYLQINQKLQSLKK 227 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 K L GK F +++ ++L + + R +++ L +D + + Sbjct: 228 EKYVYEYNLTGKSYHDFLTKEKQLNEELEKLIQ---LRRELEESINQNKLQMDLLTQEVE 284 Query: 284 IAHGSTGEQKV 294 S E K Sbjct: 285 KTRLSYDEIKS 295 >gi|293402160|ref|ZP_06646298.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304267|gb|EFE45518.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 434 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 54/403 (13%), Positives = 128/403 (31%), Gaps = 70/403 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +KI + + ++++ T+ G N GKT++++++++ G ++ +S A Sbjct: 3 VKINRFELENVKRIKAVKVEPSPKGLTVIGGKNNQGKTSVIDSLAWALGGERYKPSSAAR 62 Query: 64 --VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-------------- 107 + + V +G ++ + ++ + L +N Sbjct: 63 DGSVTPPNMRVVMSNGLVVERKGKNSSLKVIDPKGNKGGQQL-LNGFIEELALNLPKFMQ 121 Query: 108 -VVIRVVDELNKHLRI--SWLVPS-------MDRIFSGLSMER-RRFLDRMVFAIDP--- 153 L + + + +R+ G +R +++ D M++ D Sbjct: 122 ATSKEKASILLQIIGVGDQLQNLERQEKETYNERLMVGRDADRKKKYADEMIYYADAPKD 181 Query: 154 -RHRRRMIDFERLMRGRN--RLLTEGYFDSSWCS---------SIEAQM-------AELG 194 +I ++ + RN D ++E Q+ AE Sbjct: 182 LISASELIQQQQAILARNGENARKREKVDQYAWELDQSNRTVAALEKQLEDAKAKQAEAA 241 Query: 195 VKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 + IAR + ++ E Q + + + + LD + + ++ +KL Sbjct: 242 NNLAIARKDAMDLQDESTEELEQNIADVEQVNIKVRANLDKEKAEEDAKRLQDEYEKLTG 301 Query: 254 GRKMDSMSRRTLIG--------PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 + + TL+ D + Y + GS EQ + +A A Sbjct: 302 TIEKIREQKITLLNNAHLPLPELSVQDGEITYKGQKWDNMSGS--EQ------LKVATA- 352 Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 I + + +D + + + + G Q T Sbjct: 353 -IVRELNPECGFVFIDKLEQMDIETMEEFGKWLENEGLQAIAT 394 >gi|325115837|emb|CBZ51392.1| putative structural maintenance of chromosome domain-containing protein [Neospora caninum Liverpool] Length = 1519 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + IK + I FR Y + F + VG NG GK+N+L AI+F G ++ Sbjct: 1 MYIKEVTIRGFRTYRHSTTIRFSPGYNCIVGTNGSGKSNVLLAIAFALGEGGH-SSAERR 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 + + VE + AD + + D+ +R + Sbjct: 60 MLLHEGVNERVPDGSVEVLLSNADRRLCMYDADEVQIRRV 99 >gi|306819821|ref|ZP_07453476.1| possible chromosome segregation protein Smc [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552190|gb|EFM40126.1| possible chromosome segregation protein Smc [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1177 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I F+++ + VG NG GK+NIL+AI L + R Sbjct: 1 MYLKAIEIRGFKSFMDKTVINLPRGMISIVGPNGSGKSNILDAIRWVLGEQSVKSLRSEK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 DV G+ S ++ + DI ++ R IN R Sbjct: 61 MQDVIFAGTQSKSQLGMCEVSLIIDNEDRQIDIEYTELAIKRKTYRNGESQFFINGKKCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|253742161|gb|EES99008.1| SMC4-like protein [Giardia intestinalis ATCC 50581] Length = 1434 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Query: 7 IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYA 62 + L + F++YA + F + +G NG GK+N+++++ F+ R R + A Sbjct: 6 LTKLRLVNFKSYAGEHILGPFKPYFSCILGANGSGKSNVIDSLLFVFGWRARALRHSRLA 65 Query: 63 DVTRIGSPSFFSTFARVE 80 D+ S ARV+ Sbjct: 66 DLIHTSSEHPELDHARVD 83 >gi|154686010|ref|YP_001421171.1| hypothetical protein RBAM_015770 [Bacillus amyloliquefaciens FZB42] gi|154351861|gb|ABS73940.1| Smc [Bacillus amyloliquefaciens FZB42] Length = 1186 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 90/269 (33%), Gaps = 35/269 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L++ F+++ + + F T VG NG GK+NI EAI L R R Sbjct: 1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITEAIRWVLGEQSARSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRV 112 D+ GS S ++ + I + + R RS + + Sbjct: 61 MEDIIFAGSDSRKRLNLAEVTLTLDNEDHFLPIDYHEVSVTRRVYRSGESEFLINNQQCR 120 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++ S L I S + +RR + + Sbjct: 121 LKDIIDLFMDSGLGKEAFSIISQGKVEEILSSKAEDRRSIFEEA--------AGVLKYKT 172 Query: 164 RLMRGRNRLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 R + N+L +E Q+ L ++ +IA + + L + Sbjct: 173 RKKKAENKLFETQDNLNRVEDILHELEDQVEPLKIQASIA-KDYLEKKKELEHVEIALTA 231 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 F +L G G D+ A +EE A+ Sbjct: 232 FDIEELH--GRWSGLKDKVQAAKEEELAE 258 >gi|49481901|gb|AAT66662.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A93] Length = 573 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 93/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + R Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L + S E QMA R++++ +E E + Sbjct: 166 VYERYEELGKKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|301060264|ref|ZP_07201131.1| RecF/RecN/SMC N-terminal domain protein [delta proteobacterium NaphS2] gi|300445776|gb|EFK09674.1| RecF/RecN/SMC N-terminal domain protein [delta proteobacterium NaphS2] Length = 402 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I L + F++ ++ + + +G NG GK+N+LEAI LS R ++R Sbjct: 2 IDKLEVRGFKSIERIQFEPG-RVNVLIGSNGSGKSNLLEAIGVLSAAV-HGRVDDEALSR 59 Query: 67 IG 68 G Sbjct: 60 RG 61 >gi|332522490|ref|ZP_08398742.1| chromosome segregation protein SMC [Streptococcus porcinus str. Jelinkova 176] gi|332313754|gb|EGJ26739.1| chromosome segregation protein SMC [Streptococcus porcinus str. Jelinkova 176] Length = 1181 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ F+ T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKKIEMQGFKSFADKTKIEFEKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 D+ G+ S + FA V + +D IK ++ R R + I+ +R Sbjct: 61 MPDIIFAGTESRNALNFAEVAIVLDNSDEFIKAAGKEIRVERHIYRNGDSDYLIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ ERR + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFE 162 >gi|302383808|ref|YP_003819631.1| chromosome segregation protein SMC [Brevundimonas subvibrioides ATCC 15264] gi|302194436|gb|ADL02008.1| chromosome segregation protein SMC [Brevundimonas subvibrioides ATCC 15264] Length = 1145 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 ++ + L + F+++ + + T VG NG GK+N+LE++ ++ R Sbjct: 1 MQFQRLRLVGFKSFVDPAEVQIEPGLTGVVGPNGCGKSNVLESMRWVMGANSAKAMRGTG 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108 DV G+ + ++ + A I++ R DR +IN Sbjct: 61 MDDVIFAGASNRPPRNHAEVSLTIDNAQRKAPQPFTDSAIIEVSRRIDRGQGSTYRINGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145 +R D L P++ R + + RRR L+ Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIAAKPQNRRRILE 165 >gi|16800473|ref|NP_470741.1| DNA repair and genetic recombination [Listeria innocua Clip11262] gi|16413878|emb|CAC96636.1| DNA repair and genetic recombination [Listeria innocua Clip11262] gi|313623865|gb|EFR93982.1| DNA repair protein RecN [Listeria innocua FSL J1-023] Length = 563 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG D R Sbjct: 2 LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----STDFIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G + A +E +D + LE RS + +IN ++ Sbjct: 57 HGEERLELQGLFALAEDNLACRNALLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L + + RF + +++ +++ ++R Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPALTKYQTNFKEYQTILRE 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189 + + Q Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197 >gi|302504789|ref|XP_003014353.1| hypothetical protein ARB_07660 [Arthroderma benhamiae CBS 112371] gi|291177921|gb|EFE33713.1| hypothetical protein ARB_07660 [Arthroderma benhamiae CBS 112371] Length = 1194 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 92/313 (29%), Gaps = 35/313 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 I + ++ F Y S + + +G NG GK+ + AI L G + R A+ Sbjct: 120 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPSYLGRAKDVAE 179 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------- 116 + G+ + + I + + + IN +R L Sbjct: 180 FVKHGADEATIEIELKARADMDQNPIICRTIKREGNKSTFSINGKPVRQNVVLSLAKSFS 239 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG----RNRL 172 + + +P S + +D + M+ + ++ + + Sbjct: 240 IQIDNLCQFLPQDK--VSEFAALSP--IDLLHSTQRAAAGPEMVKWHDGLKELRTGQKEI 295 Query: 173 LTEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L E +S+E QM V+ R E+ L +E P Sbjct: 296 LEESKNQREHLASLEKRQQMQREDVERMKQREEIKKRLK--FLEM--SRPLPRF------ 345 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GS 288 + + E+ + L + ++++ L + + + Sbjct: 346 ---NSCKKETSEVLEQKQRLLREQQELERKLEPALRAVNSKRAYYSKIEAVLKQKRVLSQ 402 Query: 289 TGEQKVVLVGIFL 301 GE+ + L Sbjct: 403 RGEEAATAISEKL 415 >gi|255021567|ref|ZP_05293610.1| Chromosome partition protein smc [Acidithiobacillus caldus ATCC 51756] gi|254968955|gb|EET26474.1| Chromosome partition protein smc [Acidithiobacillus caldus ATCC 51756] Length = 1154 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 100/292 (34%), Gaps = 41/292 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ + + F+++ ++ +A + VG NG GK+NI++AI ++ S R R A Sbjct: 1 MRLSAIRLHGFKSFRERTQIRLEANPVVIVGPNGCGKSNIVDAIRWVLGESSARQLRGAQ 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108 DV G+ ++ A VE + I++ R R +IND Sbjct: 61 MVDVISNGADGRATASEAMVELTFDNSAAKAPAPWTPVPEIRVGRRLSRDGDSQYRINDA 120 Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144 R D E RI P R + ERRR Sbjct: 121 RCRRRDVADLFLGTGLGSNAYAIIEQGTIGRIVEARPEELRAILEEAAGVSRYKERRRES 180 Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204 + + H +R+ D + R +L + ++ + +AR+E Sbjct: 181 QQRI-QETGEHLQRLYDLHGGLGERIAVLQRQAESARSLRALWQEQRRWRWWQLLARLEG 239 Query: 205 INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + + + + ++ L + + ++ ++ L ++ Sbjct: 240 ASVAHERLCQRMSRQEEQAATLQRELAQLSRQQEGLQERRQNCSEDLRQAQE 291 Score = 36.4 bits (83), Expect = 7.9, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + + S GE+ + + + A L AP +LDE+ A LD+ + Sbjct: 1045 GKRNAHLQQLSGGEKALTALALVFALFAL-----NPAPFCVLDEVDAPLDDANVGRFCAL 1099 Query: 338 VTDIGSQI 345 +T++ Q Sbjct: 1100 LTELAQQT 1107 >gi|256372279|ref|YP_003110103.1| SMC domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008863|gb|ACU54430.1| SMC domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 1115 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 ++++ L + F+++A + + F + VG NG GK+N+++A++++ + R A Sbjct: 1 MRLRALTMRGFKSFADPVTVRFGSGINAIVGPNGSGKSNVVDALTWVLGTQSPRMLRLAR 60 Query: 61 YADVTRIGS---PSFFSTFARV-----EGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 +V GS P+ + + GL I L R +R +IN R Sbjct: 61 MDEVIFQGSAHRPALGRAEVELTLDDPDDESGLGVAEIALTRRVERGGEASYRINGRAAR 120 Query: 112 VVD 114 + D Sbjct: 121 LQD 123 >gi|239826793|ref|YP_002949417.1| ATP-dependent OLD family endonuclease [Geobacillus sp. WCH70] gi|239807086|gb|ACS24151.1| ATP-dependent OLD family endonuclease [Geobacillus sp. WCH70] Length = 634 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 +K+ L + FR Y + F + +G N +GK+ ++EA+ G Sbjct: 1 MKLHSLYLKNFRGYREEVINFSENMNVIIGKNDIGKSTLMEALEIFFNG 49 >gi|255033715|ref|YP_003090159.1| hypothetical protein gp32 [Burkholderia phage KS9] gi|254832753|gb|ACT82996.1| hypothetical protein gp32 [Burkholderia phage KS9] Length = 434 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56 ++ L++ + R ++ L + F+A G NG GKT+IL AIS + Sbjct: 25 LESLHLRDVRQFSELNVQFNAGFNFIAGPNGCGKTSILTAISHCFHYQSL 74 >gi|294055882|ref|YP_003549540.1| chromosome segregation protein SMC [Coraliomargarita akajimensis DSM 45221] gi|293615215|gb|ADE55370.1| chromosome segregation protein SMC [Coraliomargarita akajimensis DSM 45221] Length = 1241 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 93/264 (35%), Gaps = 39/264 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + IS F+++A RL T VG NG GK+NI++AI L + R AS Sbjct: 1 MYLKEIVISGFKSFADRTRLDLRRGVTAVVGPNGCGKSNIVDAIRWVLGEQSAKALRGAS 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIR 111 DV G+ TF E G A +++ R R IN V R Sbjct: 61 MQDVIFEGTDKRKGLPYCEVALTFTDCEAELGTAFNEVEISRRVTREGGSDYYINGKVSR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + + L +D+I S ERR + + ++ Sbjct: 121 LKDIQRLFANTGVGRVSYSFMLQGQIDQILSTNPAERRTIFEEAAG---------ITLYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFP 222 R L + + + + + E+G +I ++ R I + Sbjct: 172 A---QRKEALNKLSLVDANLARVTDVIEEVGRQIGSLKRQASKALRYQRIKHRLS----- 223 Query: 223 HIKLSLTGFLDGKFDQSFCALKEE 246 H+ L+ + +S + + Sbjct: 224 HLDLAFNAYRHQNLSESIDKVAKR 247 >gi|288905743|ref|YP_003430965.1| Chromosome segregation protein SMC [Streptococcus gallolyticus UCN34] gi|325978775|ref|YP_004288491.1| chromosome partition protein smc [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732469|emb|CBI14041.1| Chromosome segregation protein SMC [Streptococcus gallolyticus UCN34] gi|325178703|emb|CBZ48747.1| chromosome partition protein smc [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1179 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 68/387 (17%), Positives = 128/387 (33%), Gaps = 54/387 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A + FD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEMQGFKSFADKTTIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ ++ +G A +I++E I+ +R Sbjct: 61 MPDVIFAGTENRKPLNYAQVIVTLDNSDGFIKDAKETIRVERHIYRNGDSEYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSVISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVEM--------INAL 208 + L Y + +E Q A++ + + R ++ I A Sbjct: 179 TKLNQTQDNLDRLDDIIYELETQVKPLERQ-AQVAKEFLGLEDERKQLHLNILVEDIQAD 237 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIG 267 + E Q L+ +F++ LKE+ + + R+ + + T Sbjct: 238 KERLAELNQSLTAIKADLTAYYEQRQQFERQNQNLKEKRHQLSEEISRRQEGLLDITRAI 297 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-----HARLISN-TTGFAPILLLDE 321 SDL + S E+K LA ARL + LD Sbjct: 298 ---SDLE---RQMDLIALESSQKEEKKQAASSQLADLKENQARLTEELAQKEQQLSQLDA 351 Query: 322 ISAHL--DEDKRNALFRIVTDIGSQIF 346 A D A + Q+ Sbjct: 352 KLAQTTADIQALQAELDRFSTDPDQVI 378 >gi|220931569|ref|YP_002508477.1| chromosome segregation protein SMC [Halothermothrix orenii H 168] gi|219992879|gb|ACL69482.1| chromosome segregation protein SMC [Halothermothrix orenii H 168] Length = 1185 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++A + + F++ T VG NG GK+NI++AI ++ + R + Sbjct: 1 MFLKKLELKGFKSFAKPITINFESPITAIVGPNGSGKSNIVDAIRWVLGEQSAKTLRGSR 60 Query: 61 YADVTRIGSPSF 72 ADV GS + Sbjct: 61 MADVIFAGSKDY 72 >gi|315223291|ref|ZP_07865152.1| DNA repair protein RecN [Streptococcus anginosus F0211] gi|315187723|gb|EFU21477.1| DNA repair protein RecN [Streptococcus anginosus F0211] Length = 552 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 93/279 (33%), Gaps = 37/279 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IG-------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G +G++ ++ I+ E +IN ++ + Sbjct: 57 HGASKTEIEGLFAIEQSKALVEIFEQQGLDMTEELIIRREIFQ-NGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + + D+ F D F + +++ + +L + Sbjct: 116 VLRAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDDAFFKLKADYQQIFDQYRQLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALS-----SLIMEY 215 + + + +E Q+AE+ +N R +++N + Sbjct: 176 LTIQKNQEENKARIDMLEYQIAEIEAANLKAGEDLALNQERDKLLNHKQIADTLTNAYAM 235 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 + E F + + D + + + A +E A L + Sbjct: 236 LDDEEFSSLANVRSAMNDMEAIEDYDATYKEIATNLSES 274 >gi|308184170|ref|YP_003928303.1| hypothetical protein HPSJM_01950 [Helicobacter pylori SJM180] gi|308060090|gb|ADO01986.1| hypothetical protein HPSJM_01950 [Helicobacter pylori SJM180] Length = 370 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 I+ + I F+N+ + ++ + I G N GK+N+LEA+ +L G+ Sbjct: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49 >gi|221043536|dbj|BAH13445.1| unnamed protein product [Homo sapiens] Length = 516 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 92/272 (33%), Gaps = 26/272 (9%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63 +K + I F++Y + + T +G NG GK+N+++AISF+ + R + D Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63 Query: 64 VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111 + G+P +F S EG E + + E + + V L + Sbjct: 64 LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL-MRGRN 170 + L K + +R L + + + + D +RL + R Sbjct: 123 KLGILIKARNFLVFQVKKYHRLKEEASKRAATLAQELEKFNR---DQKADQDRLDLEERK 179 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 ++ TE E Q K E I + E + E ++ + Sbjct: 180 KVETEAKIKQKLREIEENQ------KRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAK 233 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 + ++ + E+ D ++ R Sbjct: 234 RRIDEINKELNQVMEQLGDARIDRQESSRQQR 265 >gi|148270693|ref|YP_001245153.1| chromosome segregation protein SMC [Thermotoga petrophila RKU-1] gi|147736237|gb|ABQ47577.1| condensin subunit Smc [Thermotoga petrophila RKU-1] Length = 1170 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++K L + F+++ L F + T VG NG GK+NI++AI ++ + R + Sbjct: 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASE 60 Query: 61 YADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 D+ GS + S + + E +I++ E + +N +R+ D Sbjct: 61 KFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELK-RTGENTYYLNGSSVRLKD 116 >gi|227892634|ref|ZP_04010439.1| chromosome segregation protein Smc [Lactobacillus ultunensis DSM 16047] gi|227865566|gb|EEJ72987.1| chromosome segregation protein Smc [Lactobacillus ultunensis DSM 16047] Length = 1189 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F+ T VG NG GK+NI EAI ++ S + R + Sbjct: 1 MPLTELVLDGFKSFADKTIIHFNDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60 Query: 61 YADVTRIGSP 70 DV GS Sbjct: 61 MKDVIFAGSQ 70 >gi|226311933|ref|YP_002771827.1| DNA repair protein [Brevibacillus brevis NBRC 100599] gi|226094881|dbj|BAH43323.1| DNA repair protein [Brevibacillus brevis NBRC 100599] Length = 574 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 87/273 (31%), Gaps = 44/273 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F S+ + F I G+ G GK+ I++A+ L GR + AD R Sbjct: 2 LVELSIRNFAIIKSVTISFQKGLNILTGETGAGKSIIIDALGLLLGGR-----ASADFVR 56 Query: 67 IGSPSFFS-------------TFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G P + G++ D + + + ++IN ++ + Sbjct: 57 YGEPRAEVEGLFELPPGHPGLDVCKNVGVQIEQDGMLVVRRDISNQGKSIIRINGQLVTL 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM-------VFAIDPRHRRRMIDFE 163 + EL L + + ++ + + A + + Sbjct: 117 AMLRELGPWLVTVHGQHDTHMLMQSD-----KHINWLDAYGESALGAAKQEYSTLYTAYR 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEM--INALSSLI 212 + + R+ ++ Q+ E+ K+ R + I + S I Sbjct: 172 KTKQDLERMARNDRELVQRIDLLQYQLDEIESATLTPGEDEKLMQQRKKWMNIEKVYSTI 231 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + + + + G G+ ++ ++ Sbjct: 232 QDAYRALHGDQKGMDWLGHAMGELERGVNYEEQ 264 >gi|146421940|ref|XP_001486913.1| hypothetical protein PGUG_00290 [Meyerozyma guilliermondii ATCC 6260] Length = 1256 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 104/287 (36%), Gaps = 30/287 (10%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61 ++ L + F++Y + ++ F T +G NG GK+N+++AISF+ R + Sbjct: 48 RLVGLELYNFKSYRGTCKVGFGDSFFTSIIGPNGAGKSNMMDAISFVLGVNSSQLRSRNL 107 Query: 62 ADVT---RIGSPSFFS--------TFARVEGMEGLAD-ISIKLETRDDRSVRC-LQINDV 108 D+ RIG S T A V+ + D + ++L+ S +IN+ Sbjct: 108 QDLIYRGRIGGDSAADTSFEHSNPTSAYVKAIYEKDDGLQLELKRTIGSSGNGDYKINNK 167 Query: 109 VIRVVDE---------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRR 157 + L K +++I S + + ++ + + + P + + Sbjct: 168 NVTAYQYSMVLKEENILIKARNFLVFQGDVEQIASQSPRDLAQLIETISGSGELKPEYDK 227 Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYV 216 +++ ++ +S + Q+AE + + I L L Y Sbjct: 228 LKDEYDAAHEFTTQVFLHKKTLNSESRQYKEQLAEKETFETKLQERVDITKLLHLYKLYH 287 Query: 217 QKENFPHIKLSLTG-FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 ++ I + + + K+E KL + D + + Sbjct: 288 NEQKHAQISSEIGSKTEEIAKLELQIEEKKELYDKLVSAQAKDVLRQ 334 >gi|70606001|ref|YP_254871.1| hypothetical protein Saci_0157 [Sulfolobus acidocaldarius DSM 639] gi|68566649|gb|AAY79578.1| conserved protein [Sulfolobus acidocaldarius DSM 639] Length = 495 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +K+ ++ FR+ +S++L I VG NG GKTN+L AI Sbjct: 1 MKLIEFYVNNFRSISSVKLTGLGGLNIIVGYNGYGKTNLLTAIYLF 46 >gi|291567025|dbj|BAI89297.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 1026 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 8 KFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + F +Y L F HT G NG GK+++LEAI++ G+ R + D+ + Sbjct: 4 QKLTLKNFLSYRDASLDFSGLHTACICGPNGAGKSSLLEAIAWSIWGQS-RAGTEDDLIQ 62 Query: 67 IGSPSFFSTFARV 79 IG F + Sbjct: 63 IGETQMRVDFIFI 75 >gi|254470050|ref|ZP_05083454.1| DNA repair protein RecN [Pseudovibrio sp. JE062] gi|211960361|gb|EEA95557.1| DNA repair protein RecN [Pseudovibrio sp. JE062] Length = 557 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 34/243 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I + L L F ++ G+ G GK+ +L+++S GRG A + R Sbjct: 2 LASLSIRDIVLIHKLDLHFSDGMSVLTGETGAGKSILLDSLSLALGGRG-----DAGLVR 56 Query: 67 IGSPSFFSTFAR-----------VEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV-- 112 G T ++ + D I L R +ND + Sbjct: 57 HGEDRGQVTAVFDVPMAHPLRTLLQENDLEHDADIILRRVQASDGRTRAFVNDSPVSAGL 116 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167 + ++ L + R+ LD A + + E+ ++ Sbjct: 117 LRQIGALLVEVHGQHDDRALI--DPESHRQLLDSFGGLEGDAAKVSESAKAVRKAEKTLK 174 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEM--INALSSLIMEYVQKE 219 + E ++ + S +++ L ++ + R +M + ++ + E + Sbjct: 175 DHVARIEEARREADYLRSSADELSTLDPKEGEENELALRRQDMMQVEKIAGDLREGYEAL 234 Query: 220 NFP 222 + P Sbjct: 235 DGP 237 >gi|306833963|ref|ZP_07467087.1| cell division protein Smc [Streptococcus bovis ATCC 700338] gi|304423964|gb|EFM27106.1| cell division protein Smc [Streptococcus bovis ATCC 700338] Length = 1179 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 69/387 (17%), Positives = 129/387 (33%), Gaps = 54/387 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A + FD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEMQGFKSFADKTTIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ ++ +G A +I++E I+ +R Sbjct: 61 MPDVIFAGTENRKPLNYAQVIVTLDNFDGFIKDAKETIRVERHIYRNGDSEYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSVISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVEM--------INAL 208 + L Y + +E Q A++ + + R ++ I A Sbjct: 179 TKLNQTQDNLDRLDDIIYELETQVKPLERQ-AQVAKEFLGLEDERKQLHLNILVEDIQAD 237 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIG 267 + E Q L+ +F++ LKE+ + + R+ + + T Sbjct: 238 KERLAELNQSLTAITADLAAYYEQRQQFERQNQNLKEKRHQLSEEISRRQEGLLDITRAI 297 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-----HARLISNTT-GFAPILLLDE 321 SDL + S E+K LA ARL T + LD Sbjct: 298 ---SDLE---RQMDLIALESSQKEEKKQAASSQLADLKENQARLTEELTQKEQQLSQLDA 351 Query: 322 ISAHL--DEDKRNALFRIVTDIGSQIF 346 A D A + Q+ Sbjct: 352 KLAQTTADIQALQAELDRFSTDPDQVI 378 >gi|71903093|ref|YP_279896.1| chromosome partition protein smc [Streptococcus pyogenes MGAS6180] gi|71802188|gb|AAX71541.1| chromosome partition protein smc [Streptococcus pyogenes MGAS6180] Length = 1179 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 107/273 (39%), Gaps = 30/273 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ F T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIELEGFKSFADKTKIEFYKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ + +A+V + +D IK ++ R R + I+ +R Sbjct: 61 MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216 + L Y + + +E Q +A+ ++++ R ++ ++ L I Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ L+ + +++E+Y K Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271 >gi|52080957|ref|YP_079748.1| hypothetical protein BL01520 [Bacillus licheniformis ATCC 14580] gi|52786333|ref|YP_092162.1| hypothetical protein BLi02595 [Bacillus licheniformis ATCC 14580] gi|319645085|ref|ZP_07999318.1| RecN protein [Bacillus sp. BT1B_CT2] gi|52004168|gb|AAU24110.1| RecN [Bacillus licheniformis ATCC 14580] gi|52348835|gb|AAU41469.1| RecN [Bacillus licheniformis ATCC 14580] gi|317392894|gb|EFV73688.1| RecN protein [Bacillus sp. BT1B_CT2] Length = 576 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 83/264 (31%), Gaps = 43/264 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F L + F+ T+ G+ G GK+ I++A+S L GRG ++ R Sbjct: 2 LAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRG-----SSEYVR 56 Query: 67 IGSPSF-FSTFARVEGMEGLADI--SIKLETRDD----------RSVRCLQINDVVI--- 110 G ++G + D+ + +E DD ++N ++ Sbjct: 57 YGEKRAELEGLFLLDGGHPVFDLCTELGIEASDDMIVMRRDINANGKSICRVNGKLVTIA 116 Query: 111 ------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 R++ +++ L+ + RF + ++ + Sbjct: 117 ALREVGRLLLDIHGQHDNQLLMEDEHHL-----QLLDRFAGEEIENALKAYQEVYSRYMD 171 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEM--INALSSLIM 213 +M+ L + I+ Q+ E+ + R ++ + + Sbjct: 172 VMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQ 231 Query: 214 EYVQKENFPHIKLSLTGFLDGKFD 237 L G + + Sbjct: 232 NAYNALRNEQAGLDWVGMASSELE 255 >gi|71004440|ref|XP_756886.1| hypothetical protein UM00739.1 [Ustilago maydis 521] gi|46095611|gb|EAK80844.1| hypothetical protein UM00739.1 [Ustilago maydis 521] Length = 1169 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 13/135 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 ++ + + F +A+ + F + +G NG GK+ IL A+ G+ R +S D Sbjct: 128 VEKIELRNFMCHANFSIQFGPKLNFVMGRNGSGKSTILTALMIALGGKTSSTNRGSSLKD 187 Query: 64 VTRIGSPSFFSTFARV---------EGMEGLADISIKLETRDDRSVRCLQINDVVIRVV- 113 + + G S T + + I ++ S + N VI Sbjct: 188 LVKKGESSATITVTMLNQGSDAFKPDVYGNTIVIERRILAEGGGSWKMKSGNGKVIATTK 247 Query: 114 DELNKHLRISWLVPS 128 EL + + P Sbjct: 248 SELESFCDFANIQPD 262 >gi|262197043|ref|YP_003268252.1| hypothetical protein Hoch_3860 [Haliangium ochraceum DSM 14365] gi|262080390|gb|ACY16359.1| hypothetical protein Hoch_3860 [Haliangium ochraceum DSM 14365] Length = 345 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 12/103 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--------PGRGFRR 58 + L I FR + L + + + VG+NGVGKT +LEA+ + R Sbjct: 2 LPSLEIRGFRCFRELSIAPLGRINLIVGNNGVGKTALLEALRLHAAQGEALAELWRILET 61 Query: 59 ASYADVTRIGSPSFFSTF----ARVEGMEGLADISIKLETRDD 97 S + R A E + SI + +R Sbjct: 62 RSEFAMMRASQERHRQVVDWPRAFYEPHVHTHEASISVGSRVG 104 >gi|160892685|ref|ZP_02073475.1| hypothetical protein CLOL250_00215 [Clostridium sp. L2-50] gi|156865726|gb|EDO59157.1| hypothetical protein CLOL250_00215 [Clostridium sp. L2-50] Length = 1185 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + ++ F+++A+ + F+ T VG NG GK+N+ +A+ L + R + Sbjct: 1 MYLKSIEVNGFKSFANKIVFKFNHGITCIVGPNGSGKSNVADAVRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G+ A V +D + ++ + R + IN V R Sbjct: 61 MEDVIFSGTQLRKPQGSAYVAITLDNSDHHLPIDYNEVTVARRVYRSGESEYLINGTVSR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + K +++I +G ERR D Sbjct: 121 LKDVNSLFFDTGIGKEGYSIIGQGQIEKILNGKPEERRELFD 162 >gi|145591215|ref|YP_001153217.1| SMC domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145282983|gb|ABP50565.1| SMC domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 702 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 5/112 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYAD 63 I+ + + F+ +A F G NG GKT+++EAIS G + R + ++D Sbjct: 2 IRRVELINFKAHAKAAFRFGEGVNFIYGPNGSGKTSLMEAISVALFGSTWVRKVGSKWSD 61 Query: 64 VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 R GS + + +G E + E+ S + +N +I D Sbjct: 62 YLRRGSTAGEVRLYLSYQGGEVVIARRFG-ESGTSPSGTYMAVNGSIIARGD 112 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 11/163 (6%) Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 S E ++ E ++ AR ++ +L + + +K + Sbjct: 524 REQLQSTELELQEAVAELEKAREDLSKLDKALAVAKNVRGTLAELKPAARQIF------- 576 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 A+ EE R D+ L+ R + + I S GEQ ++ + Sbjct: 577 LRAINEELNHVFLKLRHKDAFKSAQLVEANGRYVARISTPNGYIDHGLLSLGEQNLLALS 636 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + +A AR + G AP ++LDE + HLDE+ R + +V D+ Sbjct: 637 LRVALARAL---LGGAPFMMLDEPTEHLDEEHRKRIVELVRDL 676 >gi|303245279|ref|ZP_07331563.1| SMC domain protein [Desulfovibrio fructosovorans JJ] gi|302493128|gb|EFL52990.1| SMC domain protein [Desulfovibrio fructosovorans JJ] Length = 395 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 I + I F++ + + + + +F+G NG GK+NILEAI +S Sbjct: 2 IDKIKIVGFKSLSDVSIDLG-KVNVFIGANGSGKSNILEAIGVMSAAAS 49 >gi|302670932|ref|YP_003830892.1| chromosome segregation protein Smc [Butyrivibrio proteoclasticus B316] gi|302395405|gb|ADL34310.1| chromosome segregation protein Smc [Butyrivibrio proteoclasticus B316] Length = 1185 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 57/318 (17%), Positives = 103/318 (32%), Gaps = 37/318 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I F+++A+ ++ F T VG NG GK+N+ +A+ L + R S Sbjct: 1 MYLKSIEIHGFKSFANKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGGS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ + ++ + I + + R RS IN R Sbjct: 61 MQDVIFSGTELRKPLGYAYVAITLDNSDHSLAIDYDEVTVSRRLYRSGESEYMINGSSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I S +RR D + + R Sbjct: 121 LKDVNELFMDTGIGKEGYSIIGQGQIDQILSSKPEDRRNLFDEAAGIVK--FKSRKETAI 178 Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVKINIARVEM----INALSSLIMEY 215 + + LT S +E Q +E+ + R + +N Sbjct: 179 KKLEEEKINLTRLSDILSELEKQIGPLEKQ-SEVAKEYLKFRERLKTLDVNMFLVENRNQ 237 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-----KLFDGRKMDSMSRRTLIGPHR 270 Q+ L + + S+ KEEY ++ D ++ +R T + Sbjct: 238 KQQLEDAEKNLEIAVNSLEQARTSYDKTKEEYENIQKKLEILDAEIDEARARITDSSVKK 297 Query: 271 SDLIVDYCDKAITIAHGS 288 L I S Sbjct: 298 EKLEGQIGILNEKIKAAS 315 >gi|227530553|ref|ZP_03960602.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus vaginalis ATCC 49540] gi|227349559|gb|EEJ39850.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus vaginalis ATCC 49540] Length = 1187 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 27/165 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++ L + F+++A + F+ T VG NG GK+NI+EAI ++ + R Sbjct: 1 MQLLSLTLDGFKSFAQKTTIKFEPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAHQLRGDK 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 ADV GS F ++ + I+ KL D +N Sbjct: 61 MADVIFNGSSDRKPLNRALVSITFDNSDRYLASDFTELTITRKLYRNGDSE---YLVNGQ 117 Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 +R+ D L + ++ IF+G +RR ++ Sbjct: 118 EVRLKDITDLFIDSGLGRESFSIISQGQIEAIFNGKPADRRSIIE 162 >gi|170043308|ref|XP_001849335.1| structural maintenance of chromosomes protein 6 [Culex quinquefasciatus] gi|167866691|gb|EDS30074.1| structural maintenance of chromosomes protein 6 [Culex quinquefasciatus] Length = 1121 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62 KI + + F + ++ + F+ + + VG+NG GK+ +L A++ S R +S Sbjct: 68 KILKIQLKNFMCHRNMVVEFNKRANLLVGNNGSGKSAVLAALTIGLGCSASATNRSSSLK 127 Query: 63 DVTRIGSPSF 72 + + G Sbjct: 128 QLIKHGESQA 137 >gi|126459089|ref|YP_001055367.1| SMC domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126248810|gb|ABO07901.1| SMC domain protein [Pyrobaculum calidifontis JCM 11548] Length = 346 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT- 65 +K L + +R L A +FVG NG GK+++LEA+ + F V Sbjct: 4 VKGLEVEGYRGLRKASLTDFAGINVFVGKNGSGKSSLLEALYIA--LKPFDG--LKHVVK 59 Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE 93 R G S A G + I I LE Sbjct: 60 RRGWFGLASAEALFHGRDSEIKIRITLE 87 >gi|332685823|ref|YP_004455597.1| chromosome partition protein Smc [Melissococcus plutonius ATCC 35311] gi|332369832|dbj|BAK20788.1| chromosome partition protein Smc [Melissococcus plutonius ATCC 35311] Length = 1192 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 21/158 (13%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R Sbjct: 1 MYLKRIEIAGFKSFADRTIIDFENGVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ ++ + + I + R R+ IN R Sbjct: 61 MPDIIFAGTQERKPLNIAEVMIVLDNTDYYLPLDFSEISIMRRYRRTGESEFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141 + D L K ++ IF+ +RR Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRR 158 >gi|115738152|ref|XP_794820.2| PREDICTED: similar to SMC6 protein [Strongylocentrotus purpuratus] gi|115944201|ref|XP_001188037.1| PREDICTED: similar to SMC6 protein [Strongylocentrotus purpuratus] Length = 1236 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 96/296 (32%), Gaps = 47/296 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 I+ +++ F + L F VG NG GK+ IL AI G+ R S + Sbjct: 131 IEKISVKNFICHGRLECNFGPNVNFVVGRNGSGKSAILTAIVVGLGGKAIATSRGNSVKN 190 Query: 64 VTRIGSP-SFFSTFARVEGMEG--------LADISIKLETRDDRSVRCLQINDVVIRV-- 112 + G + R G + ++ K+ S R VI Sbjct: 191 FIKAGKNVAEVCIKLRNRGTDAYKPDVYGPSITVTRKIMREGGNSYRITSAKGKVISNKK 250 Query: 113 --VDELNKHLRISWLVPSMDR--------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 + + H I P + + ++ +F +D + D+ Sbjct: 251 DELSHIMDHFNIQVDNPVSIMNQETSKNFLLKQSAKDKYKFF-LKATQLD----QVSNDY 305 Query: 163 ERLMRGRNRLLTEGYFDSSW--CSSIEAQMAELGVK---------INIARVEMINALSSL 211 +M N+ +TE D+ ++E ++ E+ K + R E+IN Sbjct: 306 REIML--NKGITEQKVDAQSTKLPALEYEVLEIEQKFKALTCLHDLTNKREELINQ---- 359 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267 + Q K + + + ++ +++ ++ + + ++ G Sbjct: 360 -SAWAQVAELEREKDTKRNEVQREENREPKFVEKIQQQEANVKKAEEKHAQIQSQG 414 >gi|257058663|ref|YP_003136551.1| ATPase-like protein [Cyanothece sp. PCC 8802] gi|256588829|gb|ACU99715.1| ATPase-like protein [Cyanothece sp. PCC 8802] Length = 381 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 24/45 (53%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 ++ L I FR + L + + VG+N GKT++LEAI S Sbjct: 2 LQSLKIQNFRCFEEFELQNLGRINLLVGENNSGKTSVLEAIQIFS 46 >gi|193212617|ref|YP_001998570.1| hypothetical protein Cpar_0962 [Chlorobaculum parvum NCIB 8327] gi|193086094|gb|ACF11370.1| conserved hypothetical protein [Chlorobaculum parvum NCIB 8327] Length = 632 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 69/384 (17%), Positives = 128/384 (33%), Gaps = 68/384 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +++ L I +++N L FD +FVG NG GK+N+ EA+ + FR Sbjct: 1 MRLTSLYIGQYKNLRDFSLSFDGSSFIDVFVGKNGTGKSNLFEALIEI-----FRHLVEY 55 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D ++ + ++ + D R + + V+ + H Sbjct: 56 DREKVPCDFNYRIKFVIDEKTTEIAWNSGKLIIDGEERRTVGKTPMPDNVLIYYSGHNYA 115 Query: 123 SWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFERLMRG-RNRLLTE 175 D + RRR +R +I P+++ ++ L+ Sbjct: 116 V-----SDLVERYEKAFRRRLKGANIEDNRRFISIGPKYKSLLLAV--LLSQPETNKARR 168 Query: 176 GYFDSSWCSSIEAQMA--------------ELGVKINIA---R----------VEMINAL 208 D +++ ++ ELGV A R E +N L Sbjct: 169 FIMDKLGIATVGKELIVEFRRPDFARGRLKELGVDGIEAFDPRTHYWGTDGITREFLNKL 228 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268 +S I K F H + G +F+ + K+ + + +TL Sbjct: 229 ASCI-----KGEFNHFDMYNRGKDSYRFNINLDIFKKRFKDDSVSEIFRQFDNLKTLGML 283 Query: 269 HRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 L + + + I+H S G+ + V + + L + I LLDE + L Sbjct: 284 ANITLRLKFSNGRSGFISHFSDGQFQSVYI---YSIIELFKD---RNCITLLDEPDSFLH 337 Query: 328 EDKRNALFRIVTDIGSQIF-MTGT 350 + + + QIF +T T Sbjct: 338 PEWQYQFLQ-------QIFEITDT 354 >gi|332664151|ref|YP_004446939.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332332965|gb|AEE50066.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 420 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 56/371 (15%), Positives = 123/371 (33%), Gaps = 64/371 (17%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++I+ L IS FR + +++ F T+ G NG GKT IL+ + L Sbjct: 1 MRIRELTISNFRGFGETVKFPFSEHFTVIAGVNGRGKTAILDGLVLLFSY------LLPQ 54 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-----VVIRVVDELNK 118 ++ + + V A+IS+K + I V ++ E++K Sbjct: 55 ISEAKKQTKKVSETDVHLSASEANISVKTNCAGIPLDYFVTIYGVDRKVVPQKLYAEVSK 114 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE--RLMRGRNRLLTEG 176 ++ ++ G +V+ + + + + + Sbjct: 115 TIKNAY----------GDPSRADDQAPLVVY-----YTTDRAGYRFPKALPQ----IVTS 155 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 ++ ++ +M + ++ RV + K+ + FL Sbjct: 156 GQAMAYNGALFNRMVDYKDFMSRYRVAL--------------TLTNDEKIKNSSFLGANA 201 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296 ++ E + + + ++ + L V + + + S GE+ ++ Sbjct: 202 VKAINKAIEYFLDGFAELQVQENPLK----------LWVSKHGEKLDLRQLSDGERSLIA 251 Query: 297 VGI----FLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTG 349 + LA A + N A ++L+DE+ HL + + + Q T Sbjct: 252 LICDLSRRLALANPALKNPLEGAGVVLIDELELHLHPKWQREIRDKLRKTFPNIQFITTT 311 Query: 350 TDKSVFDSLNE 360 + SLNE Sbjct: 312 HSPFIIQSLNE 322 >gi|315611794|ref|ZP_07886716.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] gi|315316209|gb|EFU64239.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] Length = 880 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 +KIK + I F+N R+ F T+FVG NG GKT I +AI G+ Sbjct: 1 MKIKKILIKNFKNIKGTRIIDFQENVTLFVGPNGFGKTTIFDAIELSLTGK 51 >gi|302419513|ref|XP_003007587.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261353238|gb|EEY15666.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 937 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 72/216 (33%), Gaps = 14/216 (6%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61 I+ + + F Y + +G NG GK++++ AI L G R S Sbjct: 75 AIRRVKVENFVTYERAEFFPGPNLNMVIGPNGTGKSSLVCAIC-LGLGYSPKHLGRAGSI 133 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119 + + G + + + ++++ +R+ ++N + + L + Sbjct: 134 KEFVKHGKATATIEIELQRRRQDRRNHVVQVQIDRERNSSRFRLNGKEATHKAIQGLMRD 193 Query: 120 LRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 L I +P + + + A DP+ R + + L + L Sbjct: 194 LSIQVDNLCQFLPQDRVVEFAGCTPVDLLHETLRAAADPQMLRWQTELQELHKDHKELQQ 253 Query: 175 EGYFDSSWCSSIE--AQMAELGVKINIARVEMINAL 208 + +++E Q + V R E + + Sbjct: 254 RSGSHAETLANLENRQQAMQADVDRFREREEALVRI 289 >gi|114563633|ref|YP_751146.1| chromosome segregation protein SMC [Shewanella frigidimarina NCIMB 400] gi|114334926|gb|ABI72308.1| chromosome segregation protein SMC [Shewanella frigidimarina NCIMB 400] Length = 1144 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ ++ FD + +G NG GK+N+++A+ ++ S + R S Sbjct: 1 MRLKQIKLAGFKSFVDPTKIPFDNALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107 DV GS + F + R+ G +IS+K + D S +N Sbjct: 61 MTDVIFNGSSARKPISVAGVELVFENIQGRLTGQYASYQEISVKRQVNRD-SESSYFLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 R D + + L P I ++ R L R Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISR---LIESKPQELRVFIEEAAGISRYKE 175 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 R + ELG + ++ LS +Q + + Sbjct: 176 RRRETENRIRHTRENLERLNDIRVELGAQ--------LDKLSQQAKAALQYRELKNSERE 227 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287 L L Q + + +G +T ++ + ++ Sbjct: 228 LHSQLLVMRYQQLLQQTDRLDAETAEGELKSEALAKTA--QQGDTSVIQLKQQLAELSDA 285 Query: 288 ST 289 Sbjct: 286 EH 287 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 40/191 (20%) Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 Q+ ++ I L ++ + +++ + + D ++ L Sbjct: 924 DVWSQQLEKVKQNII--------RLGAINLAAIEEFESQRERKAYLDSQDDDLNKGLAIL 975 Query: 244 KEEYAKKLFDGRKM----------DSMS--------RRTLIGPHRSDLIVDY-------- 277 ++ K + R D R + DL+ Sbjct: 976 EDAIRKIDKETRSRFKATFETVNHDLGLLFPKVFGGGRAYLALTGDDLLETGVTIMAQPP 1035 Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K TI S GE+ + + + A RL AP +LDE+ A LD+ R+ Sbjct: 1036 GKKNSTIHLLSGGEKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRL 1090 Query: 338 VTDIGSQI-FM 347 + ++ + F+ Sbjct: 1091 LKEMSQSVQFI 1101 >gi|298676000|ref|YP_003727750.1| chromosome segregation protein SMC [Methanohalobium evestigatum Z-7303] gi|298288988|gb|ADI74954.1| chromosome segregation protein SMC [Methanohalobium evestigatum Z-7303] Length = 1174 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 25/165 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + F+++ +++ F T G NG GK+NI++ I F LS R R Sbjct: 1 MYIKEIEFLNFKSFGKKVKIPFFDDFTTISGPNGSGKSNIIDGILFALGLSNSRTMRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDVV 109 D+ S +A+V+ +D + +E + R ++ N Sbjct: 61 LTDLIYNPDSSNKPQYAQVKIRFDNSDNEMPVEADEVEITRKIKETGSGYYSYFYFNGKS 120 Query: 110 IRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145 + + +++ +L + + P + +I + +ERR+ +D Sbjct: 121 V-SLKDIHNYLAKAKVTPEGYNVVMQGDVTQIITMTPVERRKIID 164 >gi|260663570|ref|ZP_05864460.1| chromosome segregation protein SMC [Lactobacillus fermentum 28-3-CHN] gi|260552111|gb|EEX25164.1| chromosome segregation protein SMC [Lactobacillus fermentum 28-3-CHN] Length = 1187 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++ L I F+++A + F T +G NG GK+NI+EAI ++ + R Sbjct: 1 MRLLSLEIEGFKSFADKTVIDFRPGMTGIIGPNGSGKSNIIEAIRWVMGEQSAKTLRGDK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 ADV G+ ++ + D T R R +ND +R Sbjct: 61 MADVIFNGAADRKPLNRAQVKITLDNSDHYLDSEFTELTVTRRLYRNGDSEYLVNDRPVR 120 Query: 112 VVDEL-----NKHLRISWLVPSMDR---IFSGLSMERRRFLD 145 + D + + R S+ + S R IF+G +RR ++ Sbjct: 121 LKDIVDLFIDSGIGRESFSIISQGRVAAIFNGKPTDRREVIE 162 >gi|293333792|ref|NP_001169562.1| hypothetical protein LOC100383441 [Zea mays] gi|224030099|gb|ACN34125.1| unknown [Zea mays] Length = 1040 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 86/265 (32%), Gaps = 28/265 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 I + + F ++SL + D G NG GK+ IL A+ R R AS D Sbjct: 6 ISRIRLENFMCHSSLHIELDKHVNFITGQNGSGKSAILTALCVAFGCRAKNTQRAASLKD 65 Query: 64 VTRIGSP-SFFSTFARVEGME----GLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 + G + + G + + +I LE R S + D R V Sbjct: 66 FIKTGCSYAAITVDINNHGEDAFKPEVYGDTIILERRITESASSTVLKDQHGRKVAHRKD 125 Query: 119 HLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 L I + R FL + + + + L++ N L Sbjct: 126 DLNEII---EHFNIEVENPCVIMSQDKSREFLHSG----NDKDKFKFFFKATLLQQVNDL 178 Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 L + + +SI ++ I A E ++ + I E H +L L Sbjct: 179 LATIRDNLNIAASIVEELE---ASIRPALRE-LDEIQEKIKNMEHIEEIAHEIENLNKKL 234 Query: 233 DGKFDQSFCAL---KEEYAKKLFDG 254 + ++EY +KL + Sbjct: 235 AWVWVYDVDKKIGGQQEYLEKLKER 259 >gi|146304004|ref|YP_001191320.1| SMC domain-containing protein [Metallosphaera sedula DSM 5348] gi|145702254|gb|ABP95396.1| SMC domain protein [Metallosphaera sedula DSM 5348] Length = 359 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 17/119 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA--DV 64 I + I F+++ + L VG NG GKTN+++A S L R +S + Sbjct: 2 ITSIKIKNFKSFRDVTLNL--GKISVVGPNGSGKTNLVDAFSLLKQV--LRPSSLSPYPF 57 Query: 65 TRIGS--------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 R G +EG + LE + S + +R+ D Sbjct: 58 ARWGEYKNVVFMQDPGLDISFELEGKHKGMEYRYFLEINGEHS---FTVKREEVRLGDR 113 >gi|227515695|ref|ZP_03945744.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus fermentum ATCC 14931] gi|227085943|gb|EEI21255.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus fermentum ATCC 14931] Length = 1187 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++ L I F+++A + F T +G NG GK+NI+EAI ++ + R Sbjct: 1 MRLLSLEIEGFKSFADKTVIDFRPGMTGIIGPNGSGKSNIIEAIRWVMGEQSAKTLRGDK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 ADV G+ ++ + D T R R +ND +R Sbjct: 61 MADVIFNGAADRKPLNRAQVKITLDNSDHYLDSEFTELTVTRRLYRNGDSEYLVNDRPVR 120 Query: 112 VVDEL-----NKHLRISWLVPSMDR---IFSGLSMERRRFLD 145 + D + + R S+ + S R IF+G +RR ++ Sbjct: 121 LKDIVDLFIDSGIGRESFSIISQGRVAAIFNGKPTDRREVIE 162 >gi|328853663|gb|EGG02800.1| hypothetical protein MELLADRAFT_49722 [Melampsora larici-populina 98AG31] Length = 378 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 18/156 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-----RRASY 61 I L+ + F Y + F + + +G NG GK+ + A++ L G R Sbjct: 130 IVRLSATNFMTYTEVEFHFGSHLNMIIGPNGTGKSAFMCALA-LGLGYSPATVLQRVNEV 188 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119 + G+ S ++G G +I IKL + S R +IN V E+ + Sbjct: 189 KLYVKNGTNEG-SVEIELKGKPGEENIVIKLHLNVETSSRVFEINGKRSTHTKVQEIIRS 247 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155 I D + + ER R A+DP H Sbjct: 248 FNIQV-----DNLCCFIPQERLR----EFAAMDPIH 274 >gi|314937655|ref|ZP_07844981.1| segregation protein SMC [Enterococcus faecium TX0133a04] gi|314942846|ref|ZP_07849659.1| segregation protein SMC [Enterococcus faecium TX0133C] gi|314950936|ref|ZP_07854005.1| segregation protein SMC [Enterococcus faecium TX0133A] gi|314991416|ref|ZP_07856893.1| segregation protein SMC [Enterococcus faecium TX0133B] gi|314995063|ref|ZP_07860183.1| segregation protein SMC [Enterococcus faecium TX0133a01] gi|313590789|gb|EFR69634.1| segregation protein SMC [Enterococcus faecium TX0133a01] gi|313593896|gb|EFR72741.1| segregation protein SMC [Enterococcus faecium TX0133B] gi|313596945|gb|EFR75790.1| segregation protein SMC [Enterococcus faecium TX0133A] gi|313598318|gb|EFR77163.1| segregation protein SMC [Enterococcus faecium TX0133C] gi|313643032|gb|EFS07612.1| segregation protein SMC [Enterococcus faecium TX0133a04] Length = 1191 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 100/285 (35%), Gaps = 38/285 (13%) Query: 8 KFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYAD 63 K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R D Sbjct: 2 KRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGKMPD 61 Query: 64 VTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDELNKH 119 + GS + A V + +D + LE + R + I K Sbjct: 62 IIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCRLKD 121 Query: 120 LRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 ++ +L + + IFS +RR + + +++R E+ + Sbjct: 122 IQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAEQKL 179 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLIMEY 215 L+ +E Q+ L + + A E + + + I Sbjct: 180 FETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEIKTA 235 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 236 KKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 280 >gi|312135007|ref|YP_004002345.1| chromosome segregation protein smc [Caldicellulosiruptor owensensis OL] gi|311775058|gb|ADQ04545.1| chromosome segregation protein SMC [Caldicellulosiruptor owensensis OL] Length = 1177 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 50/298 (16%), Positives = 102/298 (34%), Gaps = 35/298 (11%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + IK+L I F+++ R+ F T VG NG GK+NI +AI + + R A Sbjct: 1 MYIKWLEIYGFKSFCEKTRIEFQKGITAIVGPNGCGKSNITDAIRWALGEQSLKILRAAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ G+ F + G+ I + R R IN + R Sbjct: 61 QEDLIFAGTEKRKSQGFAEVSICFDNSNGVLPIDYQEVVVTRRLFRSGESEFFINKIPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + ++R R + ++R+ + E Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVDRYRIFEEACGITKYKYRKE--ETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R ++ ++ M EL ++ + + + + + + ++ Sbjct: 179 RKLK----------TTEENIQRLQDVMFELSTQLEEIKPD-VQKAKTYLQINQKLQSLKK 227 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIGPHRSDLIVDYCDK 280 K L G+ +++ ++L + + + DL+ + +K Sbjct: 228 EKYVYEYNLTGRRYNDLLLKEKQLNEELERLIHLRRELEKSINQSESQIDLLTQHIEK 285 Score = 38.0 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 35/171 (20%) Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K R++ + + + + + L + F ++F +K +++ F+ Sbjct: 989 EKRLQERMQFLQKQIEDLQKTT--DELKRLISHLEKNMKEIFLENFEKIKSLFSEIFFE- 1045 Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAI--------------TIAHGSTGEQKVVLVGIF 300 L G DL + D + I S GE+ +V + + Sbjct: 1046 ----------LFGGGSCDLKLIGQDGELGVDIDVKPPGKKLQNINLLSGGEKALVAIALL 1095 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348 A T + + +LDEI + LDE + + ++ SQ I +T Sbjct: 1096 FAFL-----TFKGSLLCILDEIDSSLDEVNVQRFAQYIKNLNSQSQIIIVT 1141 >gi|260170441|ref|ZP_05756853.1| hypothetical protein BacD2_01103 [Bacteroides sp. D2] gi|315918795|ref|ZP_07915035.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692670|gb|EFS29505.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 589 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 ++I ++I FR + R+ FD TIFVG N GKT+ + AI + G+ Sbjct: 1 MRINHVHIRNFRKLRNCRIDFDENQTIFVGANNSGKTSAMSAIIWFLKGK 50 >gi|59711735|ref|YP_204511.1| hypothetical protein VF_1128 [Vibrio fischeri ES114] gi|59479836|gb|AAW85623.1| hypothetical protein VF_1128 [Vibrio fischeri ES114] Length = 629 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 16/105 (15%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---------LSPGR 54 +I++ + + F+++ L + + + I +G+N GK+ I E I L+ + Sbjct: 2 QIRLSEIQLKNFKSFEDLTISPNNRFNIIIGENSAGKSTIFEGIHLWEKCYEAFILASRK 61 Query: 55 GF--RRASYADVTRIGSPSFFSTFARVE-----GMEGLADISIKL 92 GF R S + F + + G A+I++ L Sbjct: 62 GFYKVRGSTSRYVNYQELDFLRLTSDNDLFFHSGRTRNAEITVTL 106 >gi|317013811|gb|ADU81247.1| hypothetical protein HPGAM_02005 [Helicobacter pylori Gambia94/24] Length = 375 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 I+ + I F+N+ + ++ + I G N GK+N+LEA+ +L G+ Sbjct: 2 IQSVRIKNFKNFKNTQIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49 >gi|224095847|ref|XP_002187833.1| PREDICTED: structural maintenance of chromosomes 1B [Taeniopygia guttata] Length = 1238 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 50/307 (16%), Positives = 114/307 (37%), Gaps = 27/307 (8%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63 +K L + +F+++ + + +G NG GK+NI++A+SF+ + R S + Sbjct: 4 LKVLVVKDFKSWRGQQVIGPFMRFNCIIGPNGSGKSNIMDAVSFVLCEKTANLRVKSVRE 63 Query: 64 VTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHL 120 + G+ S+ A V+ + D K +R R + ND + +++ Sbjct: 64 LI-HGAHVGKPVSSTASVKIVYCEEDGEEKTFSRVIRGSCSEFLFNDKSVSRSAYISELE 122 Query: 121 RISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 +I LV + + + +R + +++ + + + ++ M + Sbjct: 123 KIGILVKARNCLIFQGTVESIAMKKPKDRTQLFEQISNSWE--YAEDYEQKKKKMEQAEQ 180 Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 Y ++ Q A++ + +I L ++ + + + K F Sbjct: 181 DAQFNYNKKKSVAAERKQ-AKIEKEEAEHYQMLIKELDEERIQLQLFQLYHNEK--QISF 237 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMS-RRTLIGPHRSDLIVDYCDKAITIAHGSTG 290 L D+ E Y KK DS ++ + G D + +K + S Sbjct: 238 LKNNLDE---KNMEAYTKKEALSTAEDSFKVKKKMFGILNRDQQ--HMEKEMKTLEASLV 292 Query: 291 EQKVVLV 297 +Q+ + + Sbjct: 293 QQRALYI 299 >gi|193202684|ref|NP_001040658.2| High Incidence of Males (increased X chromosome loss) family member (him-1) [Caenorhabditis elegans] gi|163914651|gb|AAK21378.3| High incidence of males (increased x chromosome loss) protein 1, isoform a [Caenorhabditis elegans] Length = 1262 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 40/284 (14%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63 + L I F++Y + + T +G NG GK+N+++AISF+ + R YAD Sbjct: 16 LHTLEIENFKSYKGKHTIGPFTRFTAIIGPNGSGKSNLMDAISFVLGEKPSSLRVRKYAD 75 Query: 64 VTRIGSP--SFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHL 120 + G+P + RV +D +K TR + ++ + + Sbjct: 76 LI-HGAPINKPVAKKCRVTMNYKYSDGKVKAFTRGVNNGTSEHLLDGQTVTSAAYSQEME 134 Query: 121 RISWLVPSMDRIFSGL---------SMERRRFLDRMVFAID--PRHRRRMIDFERL---- 165 I+ + + + + ER + + + + + + R ++ + Sbjct: 135 SINIFIKARNFLVYQGAIENIAMKTPKERTQLFEELSRSHEFQAEYERLKVEMTKAEDDT 194 Query: 166 ---------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL---SSLIM 213 + R ++ +++ ++A + ++ L I Sbjct: 195 QHNMNKRRGIAQEKREAKMEKDEAEKYQTMKNELAAKSTML------FLHQLFHCERTID 248 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 E ++ N ++ K + A+ +E+ K L + +KM Sbjct: 249 ESKEEINAQKKTIASLEATRSKEEAKIAAVHQEHRKALREVQKM 292 >gi|328354661|emb|CCA41058.1| Structural maintenance of chromosomes protein 2 [Pichia pastoris CBS 7435] Length = 1168 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D+Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVISGWDSQFNAITGLNGSGKSNILDAICFVLGISSMTTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E L IS+ + + + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFDNSDTDKSPIGFEKLPSISVTRQIVLGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + L + + + + + Sbjct: 120 HRAQQQTVLQLFQSVQLNINNPNFLIMQG 148 >gi|184155713|ref|YP_001844053.1| chromosome segregation protein [Lactobacillus fermentum IFO 3956] gi|183227057|dbj|BAG27573.1| chromosome segregation protein [Lactobacillus fermentum IFO 3956] Length = 1187 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++ L I F+++A + F T +G NG GK+NI+EAI ++ + R Sbjct: 1 MRLLSLEIEGFKSFADKTVIDFRPGMTGIIGPNGSGKSNIIEAIRWVMGEQSAKTLRGDK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 ADV G+ ++ + D T R R +ND +R Sbjct: 61 MADVIFNGAADRKPLNRAQVKITLDNSDHYLDSEFTELTVTRRLYRNGDSEYLVNDRPVR 120 Query: 112 VVDEL-----NKHLRISWLVPSMDR---IFSGLSMERRRFLD 145 + D + + R S+ + S R IF+G +RR ++ Sbjct: 121 LKDIVDLFIDSGIGRESFSIISQGRVAAIFNGKPTDRREVIE 162 >gi|117619753|ref|YP_855768.1| chromosome segregation protein SMC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561160|gb|ABK38108.1| chromosome segregation protein SMC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1124 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 65/369 (17%), Positives = 121/369 (32%), Gaps = 62/369 (16%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ R+ +A T VG NG GK+N+++A+ ++ S R R + Sbjct: 1 MRLKLIKLAGFKSFVEPTRIELNADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGEN 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107 DV GS + F + RV G G +IS++ E D S QIN Sbjct: 61 MTDVIFNGSVNRSAHGRASVELVFDNPHNRVPGEFGRFTEISVRREVLRDGSN-HYQING 119 Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159 R D L ++ R+ + + F++ R++ R Sbjct: 120 QKCRRKDVTDLFLGTGLGPRSYAIIEQGTVSRLVESRPADLKLFMEEAAG--VSRYKERR 177 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 + E+ +R L S + R + + S + Sbjct: 178 RETEQRIRHTQENLERLGDIRGELGSRLEHLKAQAE--TAERYKQLKNRSRAARAELIGS 235 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 ++ L ++ A E+ L R D TL Sbjct: 236 ELWALETRL------GEAKTELAQTEQALAALDAKRTADEGRHVTL----------SVAR 279 Query: 280 KAITIAHGSTGEQKVVL---VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336 + S +Q++ L L +L + G + +R AL Sbjct: 280 QEAQAEQASR-QQQIFLGGQAIARLEQQQLHQSELGRDW------------QARRQALGE 326 Query: 337 IVTDIGSQI 345 + + SQ+ Sbjct: 327 RIEGLKSQL 335 Score = 38.0 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K TIA S GE+ + + + A RL AP LLDE+ A LDE + Sbjct: 1016 GKKNATIALLSGGEKALTALALVFAIFRL-----NPAPFCLLDEVDAPLDEVNVGRFCSL 1070 Query: 338 VTDIGSQI 345 V ++ S + Sbjct: 1071 VKEMSSTV 1078 >gi|150388685|ref|YP_001318734.1| SMC domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948547|gb|ABR47075.1| SMC domain protein [Alkaliphilus metalliredigens QYMF] Length = 438 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 65/373 (17%), Positives = 134/373 (35%), Gaps = 63/373 (16%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +K++++ + ++N + + F+ Q F+G+NG GK+NILE I+ + + Sbjct: 1 MKMEYIYVHGYKNLNDIEIYFEPQSSVNSFIGNNGSGKSNILEVIAII------FSSVLD 54 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 DV +P F + + + +E R+ + + N + D + Sbjct: 55 DV----NPDGFEFCLKYTIDDYI------IEIRNTEKLLEILKNGEKVSKKD-------V 97 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + + P ++ +R + L + ID R + + E + + LT D Sbjct: 98 NQIFPKAIFLYYAGETKRLKQLSDEI--IDKRFEKTLKKDEEI---AFKFLTYLSVDDFG 152 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---------ENFPHIKLSLTGFLD 233 S + + NI ++ I + I ++K +NF + ++ L+ Sbjct: 153 PSLLSNHIFRNDTYYNICKLVDIKDICPPITINLKKPSWSKNGKADNFWNAVGAVAKELN 212 Query: 234 GKFDQSFCALKEEYAKKL----FDGRKMDSMSRRTLIGPHR--------SDLIVDYCDKA 281 + ++ + K+ + K DS+ L + L + Sbjct: 213 TFAQKGTYSIIDNNRSKIVIEDIEKLKDDSIGALGLFTIFKMLAQADVLDGLEFEVVKGN 272 Query: 282 ITIAH--GSTGEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIV 338 ++ S GE+ L+ I T + LLDE ++L + + IV Sbjct: 273 DKFSYTGLSEGEK-------QLSQLLSILEITKEYKALFLLDEFDSYLHPNWQRKFVDIV 325 Query: 339 TDIG--SQIFMTG 349 +I QI T Sbjct: 326 NEINIRGQILFTT 338 >gi|313672426|ref|YP_004050537.1| chromosome segregation protein smc [Calditerrivibrio nitroreducens DSM 19672] gi|312939182|gb|ADR18374.1| chromosome segregation protein SMC [Calditerrivibrio nitroreducens DSM 19672] Length = 1118 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 90/282 (31%), Gaps = 30/282 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +K K L I F+++ + F T VG NG GK+NIL+AI ++ + R + Sbjct: 1 MKFKKLIIQGFKSFVDKTVIDFPDGITCIVGPNGSGKSNILDAIRWILGEQNPKELRGSD 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 D+ GS + S + + ++I I + D R IN+ Sbjct: 61 MDDIIFAGSEKRSQSNVASVTLVISDISEELAGKWGSFSEIEISRKYYRD-GEREYFINN 119 Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159 ++ D L +++I S E R F D R + + Sbjct: 120 KRCKLKDIREIFFDTGLGARSISIIEQGKVEKIISASPEEIRVFFDEAAGIT--RFKEKK 177 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA--LSSLIMEYVQ 217 D E+ + L S + K+ R I L I Y Sbjct: 178 KDAEKRLEQAKENLNRVKDIISEVKEKYDALYLQVEKLKNYRELKIRRDLLDKTIYAYNY 237 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 + + L + + S + E KK K + Sbjct: 238 HLSLAQYQEFLKKNDEIQIKLSSSIYEYENLKKQEQNLKDEI 279 >gi|83646206|ref|YP_434641.1| ATPase [Hahella chejuensis KCTC 2396] gi|83634249|gb|ABC30216.1| predicted ATPase [Hahella chejuensis KCTC 2396] Length = 386 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Query: 5 IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 + +K ++I F +Y + I +G NG GKTN++EAI L Sbjct: 1 MLLKSISIKNFLSYGEKEQYISLQP-LNIIIGPNGSGKTNLIEAIELL 47 >gi|314948018|ref|ZP_07851422.1| segregation protein SMC [Enterococcus faecium TX0082] gi|313645616|gb|EFS10196.1| segregation protein SMC [Enterococcus faecium TX0082] Length = 1191 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 100/285 (35%), Gaps = 38/285 (13%) Query: 8 KFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYAD 63 K + I+ F+++A + F+ T VG NG GK+NI EAI ++ + R D Sbjct: 2 KRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGKMPD 61 Query: 64 VTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDELNKH 119 + GS + A V + +D + LE + R + I K Sbjct: 62 IIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCRLKD 121 Query: 120 LRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 ++ +L + + IFS +RR + + +++R E+ + Sbjct: 122 IQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAEQKL 179 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLIMEY 215 L+ +E Q+ L + + A E + + + I Sbjct: 180 FETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEIKTA 235 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + + +L+ GK +S + AK+ + + D + Sbjct: 236 KKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 280 >gi|310791210|gb|EFQ26739.1| RecF/RecN/SMC N terminal domain-containing protein [Glomerella graminicola M1.001] Length = 1118 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 74/220 (33%), Gaps = 14/220 (6%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62 I+ + + F Y + +G NG GK++++ AI L R + Sbjct: 75 AIRRVKVENFVTYEMAEFFPGPNLNMVIGPNGTGKSSLVCAICLGLGFSPKHLGRAGNVK 134 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHL 120 + + G S + ++++ +R+ + +N + + L + L Sbjct: 135 EFVKHGKSSAIIEIELQRRPQDRHHHVVRVQIDRERNSQKWWLNGKDTTHKTIQILMRDL 194 Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 +I +P R+ S L + A P+ + + + L Sbjct: 195 KIQVDNLCQFLPQD-RVVEFASATPVDLLHETLRAAAPQEMLDWQKSLQDLHNDQKELQR 253 Query: 176 GYFDSS-WCSSIEAQMAELGVKINIARVEMINALSSLIME 214 G ++ +E + + ++ ++ R+ I I + Sbjct: 254 GSDSAADHLKQLEDR--QNDMQQDVDRLREIEEAQRQIAD 291 >gi|258569066|ref|XP_002585277.1| hypothetical protein UREG_05966 [Uncinocarpus reesii 1704] gi|237906723|gb|EEP81124.1| hypothetical protein UREG_05966 [Uncinocarpus reesii 1704] Length = 1140 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 11/134 (8%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62 I + +++F Y+S + + + +G NG GK+ ++ AI L G R A Sbjct: 92 AIVRIKLTDFVTYSSAEIRPGPKLNMVIGPNGTGKSTLVCAICLGLGEGPQHLGRARDAA 151 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHL 120 + + G P + + G + + + + + IN + + V + + L Sbjct: 152 EFIKNGRPEA-TIEIELASPIGKRNTVVTRIIKRNGNKSLFAINGKQVSGKKVRQFARSL 210 Query: 121 RISW-----LVPSM 129 I +P Sbjct: 211 SIQINNLCQFLPQD 224 >gi|157692923|ref|YP_001487385.1| DNA repair protein RecN [Bacillus pumilus SAFR-032] gi|157681681|gb|ABV62825.1| DNA repair protein RecN [Bacillus pumilus SAFR-032] Length = 578 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 82/256 (32%), Gaps = 37/256 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L I F L + F+ T+ G+ G GK+ +++A+S L GRG ++ R Sbjct: 2 LAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRG-----SSEFVR 56 Query: 67 IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 G +G++ ++ I ++ +IN ++ Sbjct: 57 YGEKKAELEGLFLVPAADHPVFALCEEQGIDASDEMMILRRDMNNNGKSICRINGKLV-T 115 Query: 113 VDELNKHLRISW-LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 + L + R+ + D LD+ + ++ Sbjct: 116 ISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAE---EIAPALSQYQEAYEQ--- 169 Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 T+ S E +M R++++ +E Q E KL Sbjct: 170 -YTKTAQKLKQLSENEQEMV--------HRLDLLQ-FQLEEIEAAQLEPGEDEKLQEERH 219 Query: 232 LDGKFDQSFCALKEEY 247 +++ F +L+ Y Sbjct: 220 QISNYEKIFSSLQNAY 235 >gi|15645693|ref|NP_207870.1| hypothetical protein HP1079 [Helicobacter pylori 26695] gi|2314229|gb|AAD08125.1| predicted coding region HP1079 [Helicobacter pylori 26695] Length = 370 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 I+ + I F+N+ + ++ + I G N GK+N+LEA+ +L G+ Sbjct: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49 >gi|150864658|ref|XP_001383583.2| Protein involved in recombination repair [Scheffersomyces stipitis CBS 6054] gi|149385914|gb|ABN65554.2| Protein involved in recombination repair [Scheffersomyces stipitis CBS 6054] Length = 1063 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 4/112 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ +++ F + S L Q +G NG GK+ IL IS + R S Sbjct: 42 IERISLKNFMCHDSFELELGPQINFIIGRNGSGKSAILTGISVGLGAKASDTNRGTSIKS 101 Query: 64 VTRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 + G + T + EG E +R ++ + N IR Sbjct: 102 FIKDGKSTARVTIVFLNEGPEAYRPEEFGKRIIIERKLQRIGGNTYAIRSHS 153 >gi|109946668|ref|YP_663896.1| hypothetical protein Hac_0033 [Helicobacter acinonychis str. Sheeba] gi|109713889|emb|CAJ98897.1| conserved hypothetical protein fragment 1 [Helicobacter acinonychis str. Sheeba] Length = 128 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 24/43 (55%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 IK + I ++N+ L++ F G N +GKTN+LEA+ Sbjct: 2 IKSVEIENYKNFKHLKMESFKPINFFTGQNDMGKTNLLEALYI 44 >gi|297806795|ref|XP_002871281.1| structural maintenance of chromosomes family protein [Arabidopsis lyrata subsp. lyrata] gi|297317118|gb|EFH47540.1| structural maintenance of chromosomes family protein [Arabidopsis lyrata subsp. lyrata] Length = 1063 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 78/273 (28%), Gaps = 41/273 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 I + + F +++L + F G NG GK+ IL A+ R R A+ D Sbjct: 22 IVRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATLKD 81 Query: 64 VTRIGSPSFFSTFARVEGM----------------EGLADISIKLETRDDRSVRCLQIND 107 + G S+ ++ E S L D R + Sbjct: 82 FIKNGC-SYALVHVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQGRKISSRR 140 Query: 108 VVIRVVDELNKH---LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 +R + E + R F ++ +F + Sbjct: 141 EELRQLVEHYNIDVENPCVIMSQDKSREFLHSGNDKDKF---------KFFYKA-----T 186 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 L++ + LL +++ +M + I I+ L I E Sbjct: 187 LLQQVDDLLQSIGTKLKSANALMDEMEKTIKPIQKE----ISELLEKIKNMEHVEEITQQ 242 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 L L L + +E +K+ R+ Sbjct: 243 VLHLKNKLAWSWVYDVNRQLKEQNEKIVKLRER 275 >gi|148654508|ref|YP_001274713.1| chromosome segregation protein SMC [Roseiflexus sp. RS-1] gi|148566618|gb|ABQ88763.1| condensin subunit Smc [Roseiflexus sp. RS-1] Length = 1201 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 108/316 (34%), Gaps = 26/316 (8%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + ++ L I F+ +A F T VG NG GK+N+++AI ++ R Sbjct: 1 MYLRRLEIQGFKTFAGHTLFEFQPGITAVVGPNGSGKSNLVDAIRWVLGEQHPGALRCKR 60 Query: 61 YADVTRIGS-----PSFFSTFARVEGMEGLAD---ISIKLETRDDRSV-RCLQINDVVIR 111 D+ G F ++ + L + + R RS + IN +R Sbjct: 61 TEDLIFSGGGRRAPAGFAEVSLTIDNSDRLLSAPYGEVTITRRATRSGDQEYFINRQRVR 120 Query: 112 VVD--ELNKHLRISWLVPS---MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 + D E+ + ++ + + +D + +ERRR + A + +R D ER + Sbjct: 121 LRDVQEIAAPINGAYAIINQGLVDAALNLRPLERRRLFED--AAAISVYEQRRTDAERRL 178 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-PHIK 225 R N + + + R +++ L L+ Y + + Sbjct: 179 RETNANVARCSDILAELEPRLRSLKRQAALARSHR-DLMAELHELLQTYYVRLWLTAQTE 237 Query: 226 LSLTGFLDGKFDQSFCALKEEYAK---KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 + T + + E L R+ + R IG ++ + Sbjct: 238 CAATEQAAQTLAATLAVRQAEMTAVSTDLLHLRER-IRAIRDRIGSLHAESSALHARAGS 296 Query: 283 TIAHGSTGEQKVVLVG 298 + G++++ + Sbjct: 297 VQRALAVGQERLAALS 312 >gi|49481883|gb|AAT66653.1| DNA repair and genetic recombination protein [Bacillus caldovelox] Length = 573 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + R Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGLXA---AEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L S E QMA R++++ +E E + Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|323456696|gb|EGB12562.1| hypothetical protein AURANDRAFT_70503 [Aureococcus anophagefferens] Length = 1114 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58 M +R +I+ L I F+++ ++ T VG NG GK+N+++A+SF+ R R Sbjct: 1 MASRGRIRSLEIENFKSFGGKNVIAFRGFTSVVGPNGAGKSNLMDAVSFVLGIHSRHLRS 60 Query: 59 ASYADVTRIG 68 + ++ G Sbjct: 61 SKLIELLHKG 70 >gi|284801753|ref|YP_003413618.1| DNA repair and genetic recombination [Listeria monocytogenes 08-5578] gi|284994895|ref|YP_003416663.1| DNA repair and genetic recombination [Listeria monocytogenes 08-5923] gi|284057315|gb|ADB68256.1| DNA repair and genetic recombination [Listeria monocytogenes 08-5578] gi|284060362|gb|ADB71301.1| DNA repair and genetic recombination [Listeria monocytogenes 08-5923] Length = 563 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG AD R Sbjct: 2 LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G + A +E +D + LE RS + +IN ++ Sbjct: 57 HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L + + RF + +++ +++ + + Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKLALTKYQTNFKEYQTIEKE 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189 + + Q Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197 >gi|300707231|ref|XP_002995833.1| hypothetical protein NCER_101178 [Nosema ceranae BRL01] gi|239605055|gb|EEQ82162.1| hypothetical protein NCER_101178 [Nosema ceranae BRL01] Length = 972 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 5/136 (3%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I+ + I F+++ S + + TI +G NG GK+NI+ AI + R D Sbjct: 1 MHIQKIEIENFKSFKSFTSIDLSPKFTIIIGKNGSGKSNIIHAIRTVICCEKLSREDRLD 60 Query: 64 VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + + S F + +I ++ + +N+ +I D L L Sbjct: 61 LIHENLFEDTTSISLFIDNSDKRLDSQKNIVIKRCINAEKDEYFLNEKLISRKD-LKGFL 119 Query: 121 RISWLVPSMDRIFSGL 136 + S I Sbjct: 120 ENGGISSSSYFIVQQG 135 Score = 36.0 bits (82), Expect = 9.5, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIF 346 S G++ +V + + L+ +P + DEI A+LD++ R L + + I Q Sbjct: 876 SGGQKTMVSIALILS-----IQKVDPSPFYIFDEIDANLDQEGRLRLSNLFSSIKDVQFI 930 Query: 347 MTGTDKSVFD 356 +T + + + Sbjct: 931 ITTFREELLN 940 >gi|269120738|ref|YP_003308915.1| chromosome segregation protein SMC [Sebaldella termitidis ATCC 33386] gi|268614616|gb|ACZ08984.1| chromosome segregation protein SMC [Sebaldella termitidis ATCC 33386] Length = 1175 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L ++ F+++A + F T VG NG GK+NIL+AI L + R Sbjct: 1 MYLKALELNGFKSFAEKTVIDFTNGITSIVGPNGSGKSNILDAILWVLGEQSYKSIRAKD 60 Query: 61 YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 +DV G + + A V + +D + ++ D + R + IN+ IR Sbjct: 61 SSDVIFSGGKNRKAKSVAEVSLIIDNSDRYLDIDFTDLKITRRIYRSGENEYLINNRKIR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|166031774|ref|ZP_02234603.1| hypothetical protein DORFOR_01475 [Dorea formicigenerans ATCC 27755] gi|166028227|gb|EDR46984.1| hypothetical protein DORFOR_01475 [Dorea formicigenerans ATCC 27755] Length = 1186 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++A+ ++ F T VG NG GK+N+ +A+ ++ + R + Sbjct: 1 MYLKSIEVQGFKSFANKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + I + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNSDHKLAIDFEEVTVTRKLYRSGESEYLINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + K +D+I SG ERR D Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFD 162 >gi|162453294|ref|YP_001615661.1| hypothetical protein sce5018 [Sorangium cellulosum 'So ce 56'] gi|161163876|emb|CAN95181.1| hypothetical protein sce5018 [Sorangium cellulosum 'So ce 56'] Length = 361 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 56/382 (14%), Positives = 111/382 (29%), Gaps = 94/382 (24%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA------- 59 I +++ +F+ + + Q T+ VG NG GKT++LEA+ R + Sbjct: 2 ITSVHLHDFKGHRDSTVPLG-QFTVLVGPNGSGKTSVLEALWAQGQVPNCRPSQFFVEKW 60 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 S D+ R G+ + G+ S LE V I +L Sbjct: 61 SIGDLVRRGAQGPSVLIS--HGISNALPWSSWLELNSSSPVAFRWIQGKSDNQY-QLTDS 117 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 +S VP + + + + Sbjct: 118 QTLSVSVPQ---------------IAQGIGQVS--------------------------- 135 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 M E +I A + + + L +D+ Sbjct: 136 ----------MYEFDAEIIGA-AAYSDQPGPDVERDGTNTAVALTAIKL------GYDED 178 Query: 240 FCALKEEYAKKLFDGRKMDSMS------RRTLIG----PHRSDLIVDYCDKA-ITIAHGS 288 F +++ + + + ++ ++T G S + D+ + S Sbjct: 179 FARIEDSLRRIIPNVERVRIRQAIVRRPKQTFPGESERVVGSKIFFDFRGAPGVPAHAAS 238 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-----GS 343 G + + L + +LLLD+ + L + L R++ + Sbjct: 239 EGTLITLALLTVL-------HGPNRPSVLLLDDFAESLHPQAQMELVRLIKRLLEEFKDL 291 Query: 344 QIFMTGTDKSVFDSLNETAKFM 365 QI T + D L + A+ + Sbjct: 292 QIVATTHSPYILDEL-DPAQVI 312 >gi|146307770|ref|YP_001188235.1| condensin subunit Smc [Pseudomonas mendocina ymp] gi|145575971|gb|ABP85503.1| condensin subunit Smc [Pseudomonas mendocina ymp] Length = 1162 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 49/324 (15%), Positives = 102/324 (31%), Gaps = 44/324 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKSIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLAD----------ISIKLETRDDR-SVRCLQINDV 108 DV GS + T A +E + +D I + R R +N Sbjct: 61 MTDVIFNGSNTRKPVTQASIELIFDNSDNSLVGEYAAFAEISIRRRVTRDGQNTYFLNGT 120 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159 R D + + L P I E R F++ + Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEELRNFIEE---------AAGI 170 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 ++ R + + + + + ++ +++ E K Sbjct: 171 SKYKERRRETENRIRRTQENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLKA 230 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-- 277 ++ G +Q + + + + R D+ R G H + Sbjct: 231 QLLALRWQTLNQQVGSREQVIGDQEVAFEALVAEQRSADAAIERLRDGHHELSERFNLVQ 290 Query: 278 -----CDKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 291 GRFYSVGGDIARVEQSIQHGQQRL 314 >gi|116628031|ref|YP_820650.1| chromosome segregation SMC protein [Streptococcus thermophilus LMD-9] gi|116101308|gb|ABJ66454.1| condensin subunit Smc [Streptococcus thermophilus LMD-9] gi|312278627|gb|ADQ63284.1| Condensin subunit Smc [Streptococcus thermophilus ND03] Length = 1177 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKSIEMQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ ++ +G +I++E IN +R Sbjct: 61 MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIAGVGETIRVERHIYRNGDNDYLINGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ +RR + Sbjct: 121 LRDIRDLFMDTGLGRDSFSIISQGRVEAIFNAKPEDRRAIFE 162 >gi|325971129|ref|YP_004247320.1| SMC domain protein [Spirochaeta sp. Buddy] gi|324026367|gb|ADY13126.1| SMC domain protein [Spirochaeta sp. Buddy] Length = 949 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A + L F T +G NG GK+NI++AI L + R Sbjct: 1 MFLKSLEIYGFKSFADKVNLEFSDGITSLLGPNGCGKSNIVDAIKWVLGEQSTKTLRAGR 60 Query: 61 YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVV 109 DV G+ + E G+ + ++++ R+ S L N V+ Sbjct: 61 MEDVIFNGTDTRKPLQVAEVTLVISNEERHLGIEEAEVEIKRRIFRNGDSEYYLNRNRVL 120 Query: 110 IRVVDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLD 145 ++ + EL K +D+I S +RR + Sbjct: 121 LKNIRELFYDTGVGKSAYSILEQGKIDQILSSKPEDRRYIFE 162 >gi|269986423|gb|EEZ92710.1| intracellular protein transport protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 88 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 + I + + R++ + F I G+ G GKT+IL +I + G+ Sbjct: 1 MIISKIKLENIRSHNKTEIQFTDGINIITGNTGSGKTSILMSIEYALFGK 50 >gi|218289469|ref|ZP_03493697.1| SMC domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218240337|gb|EED07519.1| SMC domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 514 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 7/110 (6%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASYA 62 +KI + + FR++ F T+ G NG GK+ + EA+ + G R+ Sbjct: 1 MKILSIQLENFRSFTEASFQFHD-ITVISGHNGAGKSTLAEAVVWCLFGTDIAGRQKQDE 59 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 + R+G T + + + + TR R L +N + Sbjct: 60 KLMRLGEKRMAVTVTWLIRGKSV----VISRTRASRQGSTLLVNGKRAQP 105 >gi|148995303|ref|ZP_01824077.1| hypothetical protein CGSSp9BS68_01043 [Streptococcus pneumoniae SP9-BS68] gi|168488878|ref|ZP_02713077.1| RecF/RecN/SMC N domain protein [Streptococcus pneumoniae SP195] gi|147926782|gb|EDK77841.1| hypothetical protein CGSSp9BS68_01043 [Streptococcus pneumoniae SP9-BS68] gi|183572544|gb|EDT93072.1| RecF/RecN/SMC N domain protein [Streptococcus pneumoniae SP195] gi|332073388|gb|EGI83867.1| recF/RecN/SMC N terminal domain protein [Streptococcus pneumoniae GA17570] Length = 529 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 62/393 (15%), Positives = 130/393 (33%), Gaps = 78/393 (19%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR---RASYAD 63 I + + F+ Y ++ +++ IFVG+NG GK+ +L I + G R+S + Sbjct: 2 ISRIILQNFKRYQNVDFTCNSEVNIFVGENGAGKSTLLYGIGLVLSG-SHSQIERSSLSS 60 Query: 64 VTRIGSPSFF----------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 + + F F + E +IS + + ++ + ++++ Sbjct: 61 IINQEAILEFMGTRDINQLPEVFIEIYFDELSTEISSNFNIEGKHNSQKIKAFGLSLKII 120 Query: 114 ---DELNKHLRIS------WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 D + + + R+ E F + + + ++ Sbjct: 121 PNQDYIAEITSVLNDSKWTVFPFEFYRV------EFLTFSGKTYSSYNKPYKFLHSMINT 174 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFPH 223 + + + + + +I AE K+ + R+ N L +L + + KEN Sbjct: 175 SLIDTQQEI-QKRIHEVYLDNIS---AENRAKVNHQYRINSFNFLKTLRKDELLKENASE 230 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 +L + F S A+K + Sbjct: 231 FQLHFDES-ENSFRNSVSAVK----------------------------------NGVDI 255 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIG 342 G GE+ + L S+ ILL++E HL L R++ ++ G Sbjct: 256 KNLG-QGEK------VLLGVENAYSHLKETVKILLIEEPENHLSFQNLQKLVRMLSSNTG 308 Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 Q+F+ GT ++ S + + N Q + Sbjct: 309 VQVFI-GTHSNMIASRLGVDNLLFLDNGQISKL 340 >gi|49481881|gb|AAT66652.1| DNA repair and genetic recombination protein [Bacillus caldotenax] gi|49481887|gb|AAT66655.1| DNA repair and genetic recombination protein [Geobacillus vulcani] Length = 573 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + R Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L S E QMA R++++ +E E + Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|38146942|gb|AAR11857.1| DNA repair and genetic recombination [Geobacillus stearothermophilus] Length = 573 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + R Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L S E QMA R++++ +E E + Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|89073846|ref|ZP_01160353.1| hypothetical protein SKA34_16975 [Photobacterium sp. SKA34] gi|89050381|gb|EAR55882.1| hypothetical protein SKA34_16975 [Photobacterium sp. SKA34] Length = 221 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 24/45 (53%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 I L++ F + L L F I +G+N GKT +L++I LS Sbjct: 2 ISELSLENFAAFKKLDLKFTPGINIIIGENSCGKTQLLKSIYALS 46 >gi|302658059|ref|XP_003020739.1| hypothetical protein TRV_05159 [Trichophyton verrucosum HKI 0517] gi|291184598|gb|EFE40121.1| hypothetical protein TRV_05159 [Trichophyton verrucosum HKI 0517] Length = 1194 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 35/313 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 I + ++ F Y S + + +G NG GK+ + AI L G + R A+ Sbjct: 120 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPSYLGRAKDVAE 179 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------- 116 + G+ + + I + + + IN +R L Sbjct: 180 FVKHGADEATIEIELKARADMDQNPIICRTIKREGNKSTFSINGKPVRQNVVLSLAKSFS 239 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG-RN---RL 172 + + +P S + +D + M+ + ++ R+ + Sbjct: 240 IQIDNLCQFLPQDK--VSEFAALSP--IDLLHSTQRAAAGPEMVKWHDGLKELRSGQKEI 295 Query: 173 LTEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L E +++E QM V+ R E+ L +E P Sbjct: 296 LEESKGQREHLANLEKRQQMQREDVERMKQREEIKKRLK--FLEM--SRPLPRF------ 345 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GS 288 + + E+ + L + ++++ L + + + Sbjct: 346 ---NSCKKETSEVLEQKQRLLREQQELERKLEPALRAVNSKRAYYSKIEAVLKQKRVLSQ 402 Query: 289 TGEQKVVLVGIFL 301 GE+ + L Sbjct: 403 RGEEAATAISEKL 415 >gi|332361745|gb|EGJ39549.1| DNA repair protein RecN [Streptococcus sanguinis SK1056] Length = 559 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P +G E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169 + + D+ LD + R++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGRYQETFDRYRSLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L + +E QMAE+ ++ R ++N Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221 >gi|307154437|ref|YP_003889821.1| ATPase-like protein [Cyanothece sp. PCC 7822] gi|306984665|gb|ADN16546.1| ATPase-like protein [Cyanothece sp. PCC 7822] Length = 379 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 65/372 (17%), Positives = 129/372 (34%), Gaps = 57/372 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---------LSPGRGFR 57 ++ L I FR + S L + + VG N GKT++LEA+ L+ R Sbjct: 2 LQSLKIENFRCFRSFELNNLGRINLLVGKNNSGKTSLLEAVQLFSSQFDLKSLAQLMSSR 61 Query: 58 RASYADVTRIGSPSFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIRVV 113 + + S +E + ++S IK+ D+ S L+I Sbjct: 62 GEYLWENIKYSSDIIPVKTYEIEHLFYQHNLSAESQIKMMGIDNGSQGELKILFEENFEA 121 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 + R + E + I+ F++ + + +L+ Sbjct: 122 TNYTRTSRPEPISIDDI-------SELELIIQWTEDNINS------NVFKKFLVKKEKLI 168 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + + ++++A++GV I ++ I+ L++L K+ LT D Sbjct: 169 LD-QLRLEYKRIAKSKLAKIGVFIFPYSID-ISTLNTLFD-----------KIVLTS--D 213 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG-EQ 292 + + + E +++ R+ R G +V ++ I GS G Sbjct: 214 EQLVINALKILEPTIERIASVRQNQENFRTGEKG----GFLVKLSERQKPIPIGSMGDGI 269 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR----NALFRIVTDIGSQIFMT 348 ++ + LA + ILL+DEI + L ++ + Q+F T Sbjct: 270 WR-MLALVLAMVNV------EGGILLVDEIDSGLHYTTMYDMWKIIWHTAKKLNIQVFAT 322 Query: 349 GTDKSVFDSLNE 360 + + SL Sbjct: 323 THNSDCWTSLAN 334 >gi|7500037|pir||T34063 chromosome segregation protein smc1 F28B3.7 [similarity] - Caenorhabditis elegans Length = 1310 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 40/284 (14%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63 + L I F++Y + + T +G NG GK+N+++AISF+ + R YAD Sbjct: 45 LHTLEIENFKSYKGKHTIGPFTRFTAIIGPNGSGKSNLMDAISFVLGEKPSSLRVRKYAD 104 Query: 64 VTRIGSP--SFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHL 120 + G+P + RV +D +K TR + ++ + + Sbjct: 105 LI-HGAPINKPVAKKCRVTMNYKYSDGKVKAFTRGVNNGTSEHLLDGQTVTSAAYSQEME 163 Query: 121 RISWLVPSMDRIFSGL---------SMERRRFLDRMVFAID--PRHRRRMIDFERL---- 165 I+ + + + + ER + + + + + + R ++ + Sbjct: 164 SINIFIKARNFLVYQGAIENIAMKTPKERTQLFEELSRSHEFQAEYERLKVEMTKAEDDT 223 Query: 166 ---------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL---SSLIM 213 + R ++ +++ ++A + ++ L I Sbjct: 224 QHNMNKRRGIAQEKREAKMEKDEAEKYQTMKNELAAKSTML------FLHQLFHCERTID 277 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 E ++ N ++ K + A+ +E+ K L + +KM Sbjct: 278 ESKEEINAQKKTIASLEATRSKEEAKIAAVHQEHRKALREVQKM 321 >gi|89098684|ref|ZP_01171566.1| Smc [Bacillus sp. NRRL B-14911] gi|89086646|gb|EAR65765.1| Smc [Bacillus sp. NRRL B-14911] Length = 1188 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L+I+ F+++A + F T VG NG GK+NI ++I ++ + R + Sbjct: 1 MFLKRLDIAGFKSFAEKSSVDFVPGVTAVVGPNGSGKSNITDSIRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND 107 D+ GS S S FA V D + L+ + R + + Sbjct: 61 MEDIIFAGSDSRKSLNFAEVTLTLDNEDQFLPLDYNEVSVTRRVYRSG 108 >gi|300907182|ref|ZP_07124845.1| RecF/RecN/SMC protein [Escherichia coli MS 84-1] gi|301303609|ref|ZP_07209731.1| RecF/RecN/SMC protein [Escherichia coli MS 124-1] gi|300401057|gb|EFJ84595.1| RecF/RecN/SMC protein [Escherichia coli MS 84-1] gi|300841108|gb|EFK68868.1| RecF/RecN/SMC protein [Escherichia coli MS 124-1] gi|315257839|gb|EFU37807.1| RecF/RecN/SMC protein [Escherichia coli MS 85-1] Length = 399 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 6/137 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I+ + + F+++ L + + + VG NGVGKT + + FL F S Sbjct: 1 MLIEAIKLKNFKSFQDLEMNNIPKFCVIVGANGVGKTTLFDVFGFLKDCLTFNVRSAVQK 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-----VRCLQINDVVIRVVDELNKH 119 R G S V ++ ++E ++ + + + V E+ ++ Sbjct: 61 -RGGFEELLSRGVDVTDRTIEIEVKFRIEISGYERLVTYILKLKEDSRKKVYVEREILRY 119 Query: 120 LRISWLVPSMDRIFSGL 136 R S+ P FS Sbjct: 120 KRGSFGSPYHFLDFSRG 136 >gi|294676512|ref|YP_003577127.1| SMC protein, N-terminal domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294475332|gb|ADE84720.1| SMC protein, N-terminal domain protein [Rhodobacter capsulatus SB 1003] Length = 550 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47 ++I + I FRN + FD T+ +G NG GK+N++EAI Sbjct: 1 MRIDRVYIDGFRNLQDVEADFDEGCLTTVIIGQNGAGKSNLIEAI 45 >gi|306831840|ref|ZP_07464996.1| cell division protein Smc [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426038|gb|EFM29154.1| cell division protein Smc [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 1179 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 68/387 (17%), Positives = 128/387 (33%), Gaps = 54/387 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A + FD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKEIEMQGFKSFADKTTIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ ++ +G A +I++E I+ +R Sbjct: 61 MPDVIFAGTENRKPLNYAQVIVTLDNSDGFIKDAKETIRVERHIYRNGDSEYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + + ++ R + + Sbjct: 121 LRDIHDLFMDTGLGRDSFSVISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVEM--------INAL 208 + L Y + +E Q A++ + + R ++ I A Sbjct: 179 TKLNQTQDNLDRLDDIIYELETQVKPLERQ-AQVAKEFLGLEDERKQLHLNILVEDIQAD 237 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIG 267 + E Q L+ +F++ LKE+ + + R+ + + T Sbjct: 238 KDRLAELNQSLTAIKADLTAYYEQRQQFERQNQNLKEKRHQLSEEISRRQEGLLDITRAI 297 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-----HARLISN-TTGFAPILLLDE 321 SDL + S E+K LA ARL + LD Sbjct: 298 ---SDLE---RQMDLIALESSQKEEKKQAASSQLADLKENQARLTEELAQKEQQLSQLDA 351 Query: 322 ISAHL--DEDKRNALFRIVTDIGSQIF 346 A D A + Q+ Sbjct: 352 KLAQTTADIQALQAELDRFSTDPDQVI 378 >gi|49481899|gb|AAT66661.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A90] Length = 573 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + R Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L S E QMA R++++ I E E + Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLTFXLREI-EQAALEPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|56420924|ref|YP_148242.1| DNA repair protein [Geobacillus kaustophilus HTA426] gi|47076824|dbj|BAD18364.1| DNA repair protein [Geobacillus kaustophilus] gi|49481875|gb|AAT66649.1| DNA repair and genetic recombination protein [Geobacillus kaustophilus] gi|49481885|gb|AAT66654.1| DNA repair and genetic recombination protein [Geobacillus thermoleovorans] gi|49481893|gb|AAT66658.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A60] gi|56380766|dbj|BAD76674.1| DNA repair protein (recombination protein N) [Geobacillus kaustophilus HTA426] gi|312985018|gb|ADR30683.1| RecN [Geobacillus kaustophilus] Length = 573 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + R Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L S E QMA R++++ +E E + Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|296133562|ref|YP_003640809.1| chromosome segregation protein SMC [Thermincola sp. JR] gi|296032140|gb|ADG82908.1| chromosome segregation protein SMC [Thermincola potens JR] Length = 1189 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L I F++ A L F+ T VG NG GK+NI +AI ++ + R A Sbjct: 1 MYLKRLEIQGFKSLADRTELYFNPGITAVVGPNGSGKSNISDAIRWVLGEQSAKILRGAK 60 Query: 61 YADVTRIGSP 70 DV GS Sbjct: 61 MEDVIFSGSD 70 >gi|291003075|ref|ZP_06561048.1| recombination and DNA repair protein [Saccharopolyspora erythraea NRRL 2338] Length = 606 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 87/264 (32%), Gaps = 40/264 (15%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M ++I+ L + + L T+ G+ G GKT ++ + L GR + Sbjct: 1 MLAEMRIQGLGVID-----DATLELHPGLTVVTGETGAGKTMVVTGLHLLGGGR-----A 50 Query: 61 YADVTRIGSPSFFST-------------FARVEGMEGLADISIKLETR---DDRSVRCLQ 104 A R G+P AR G E D S+ D RS L Sbjct: 51 DASRVRSGAPRAVVEGRFETTPESPAAKVARDAGAEPDEDGSLIAVRNVNADGRSRAHLG 110 Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDF 162 V V+ EL + + R+ G RF V ++R ++ Sbjct: 111 GRSVPNAVLSELAEQVLAVHGQNDQLRLLRGGEQRAVLDRFAGDSVLRPLADYQRTRSEW 170 Query: 163 ERLMR------GRNR-LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215 +R R+R L E S I+A E G +++ L Sbjct: 171 AEAVREITERTQRSRELAREADLLRHGLSEIDAVAPEPGED-----TALVDEARRLADVD 225 Query: 216 VQKENFPHIKLSLTGFLDGKFDQS 239 +E +++L+G +DG D Sbjct: 226 QLREIATGAQIALSGAVDGDPDAP 249 >gi|294955762|ref|XP_002788667.1| Structural maintenance of chromosome, putative [Perkinsus marinus ATCC 50983] gi|239904208|gb|EER20463.1| Structural maintenance of chromosome, putative [Perkinsus marinus ATCC 50983] Length = 1222 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 2/104 (1%) Query: 5 IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 + +K L I ++ Y L + A + VG NG GK+NI AI F G G + Sbjct: 1 MHLKKLTIKGYKTYRDLTTIVDLHAGVNVLVGLNGSGKSNIFSAIRFALGGDGVSKEQQR 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 S A VE +D I ++ + R + IN Sbjct: 61 RAMLHESQGQQVASAFVEVTFDNSDGKIPVDKAEVVLRRTITIN 104 >gi|237803334|ref|ZP_04590919.1| SMC domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025315|gb|EGI05371.1| SMC domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 574 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 59/368 (16%), Positives = 124/368 (33%), Gaps = 75/368 (20%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + FRN+A + + ++T+ +G N VGKTN++ A+ L + S A++ Sbjct: 1 MLITKVVLKGFRNFADATINLE-RNTLIIGANNVGKTNLVYALRLL-LDKSL---SDAEI 55 Query: 65 TRIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDR--------SVRCLQI 105 + S S ++ E E S+K DD R L Sbjct: 56 EPMESDFHISGAGKISDTLSITVYFSEVTEDAVLASLKGNITDDSCFALQYTADRRSLTY 115 Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 + + L + PS + I+ R+ + D E+ Sbjct: 116 DIKIGATRSSLVEI-------PSRYYLK----------------HINLRYVKSRRDLEKY 152 Query: 166 MR-GRNRLLTEGYFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222 + + +LL + S S +MA +G + + A++ I Sbjct: 153 INTEKRQLLKLSLENRSVTESKSDHREMARIG--------KALEAINDKIRN-------- 196 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282 L ++ L ++++ ++ S + L + Sbjct: 197 ---LHYVKGATDSVNEELQKLAHDFSE-----YEVKLDSGAIQVQQFIDSLRLGASTSGA 248 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDI 341 ++ G G +L+ ++ A ++ + ++E AHL ++ L ++ D+ Sbjct: 249 SVMLGGDGRNNQILMALWKAKSQREHDPDSEVVFYCVEEPEAHLHPHQQRKLADYLINDL 308 Query: 342 GSQIFMTG 349 Q +T Sbjct: 309 PGQTLITS 316 >gi|324990644|gb|EGC22580.1| DNA repair protein RecN [Streptococcus sanguinis SK353] Length = 552 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P +G E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169 + + D+ LD + R++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGRYQETFDRYRGLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L + +E QMAE+ ++ R ++N Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221 >gi|255658106|ref|ZP_05403515.1| putative cell division protein Smc [Mitsuokella multacida DSM 20544] gi|260849411|gb|EEX69418.1| putative cell division protein Smc [Mitsuokella multacida DSM 20544] Length = 1197 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 20/161 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L F+++A + + FD T VG NG GK+NI +A+ ++ R R Sbjct: 1 MQLKRLEAYGFKSFADKITIEFDHGITAIVGPNGSGKSNITDAVRWVLGEQNIRNLRGTR 60 Query: 61 YADVTRIGSP-------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRV 112 D+ GS + S +G + + + R RS IN R+ Sbjct: 61 SEDIIFAGSAQRRPLNIAEVSLIFDNDGTLPVDFREVAVTRRLYRSGESEYFINRSRCRL 120 Query: 113 VDEL-------NKHLRISWL-VPSMDRIFSGLSMERRRFLD 145 D H +S + M+ I + +RR F + Sbjct: 121 KDIYQLFADTGIGHDGMSIIGQNRMEDILNSRPEDRRAFFE 161 Score = 36.8 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 27/215 (12%) Query: 166 MRGRNRLLTE-----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 +R R + L G + + E R + S+ ++E KEN Sbjct: 970 LRSRMQSLKRQMDAIGPVNPNAVEEYEN---------LQKRHAFMKKQSTDLIE--AKEN 1018 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAK---KLFDGRKMDSMSRRTLIGPHRS-DLIVD 276 I + + +F +F ++ + + +LF G K + H D++V Sbjct: 1019 LGRILAEMDEAMTKQFQSAFADIQRYFGEIFVRLFGGGKAELKMLDESDVLHTGIDILVT 1078 Query: 277 Y-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335 K ++A S GE+ + ++ + A R +P +LDEI A LDE Sbjct: 1079 LPQKKRQSLAALSGGERALTVIALLFAFLRY-----RPSPFSVLDEIDAPLDEANVMRFG 1133 Query: 336 RIVTDIGSQI-FMTGTDKSVFDSLNETAKFMRISN 369 R + + Q F+ T + + +T + + Sbjct: 1134 RFLQEFAEQTQFIVVTHRKGTMEVADTMYGVTVEE 1168 >gi|169347061|ref|ZP_02866003.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|169296744|gb|EDS78873.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] Length = 579 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 13/92 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +K K L I FRN+ + + D + + G N +GKTN L AI FL DV Sbjct: 1 MKFKSLEIKNFRNFECININLDNK-NVIFGMNDIGKTNFLYAIRFLL---------DKDV 50 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRD 96 + F T +E I+++L+ D Sbjct: 51 RK---NRFVQTDYHRNNIENNISITLELDISD 79 >gi|152984252|ref|YP_001347744.1| hypothetical protein PSPA7_2377 [Pseudomonas aeruginosa PA7] gi|150959410|gb|ABR81435.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 581 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 40/85 (47%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I L I+ F+ L A + G NG GK+++L+AI+ G+ R + ++ Sbjct: 1 MRITKLEITNFQGLRHAALDVSAPVLLVAGHNGAGKSSLLDAIAMAFNGQPRRVSLKKEM 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADIS 89 ++ + + VE ++ ++ Sbjct: 61 DKLVTEGAKKGESSVEWLDESGEVQ 85 >gi|56756200|gb|AAW26275.1| SJCHGC07244 protein [Schistosoma japonicum] Length = 219 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 7/112 (6%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYA 62 ++K++ + +++Y + + T +G NG GK+N+++AISF+ R R Sbjct: 7 RLKYIELENYKSYKGKQVIGPFSVFTAIIGPNGSGKSNLMDAISFVLGENTRHLRVRRLN 66 Query: 63 DVTRIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + A V + + D K +R +IN V +R Sbjct: 67 DLI-HGSVVGKPVAKSASVTAVYEMPDGEEKRFSRVIHGNTSEYRINGVSVR 117 >gi|85714259|ref|ZP_01045247.1| Chromosome segregation protein SMC [Nitrobacter sp. Nb-311A] gi|85698706|gb|EAQ36575.1| Chromosome segregation protein SMC [Nitrobacter sp. Nb-311A] Length = 1168 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +K+ L + F+++ V + T VG NG GK+N++EA+ + + + R A Sbjct: 1 MKLTRLRLHGFKSFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSYKSLRAAD 60 Query: 61 YADVTRIGS-PSFFSTFARVEGMEGLADIS----------IKLETRDDR-SVRCLQINDV 108 V GS A V +D S +++ R +R + +IN Sbjct: 61 MDAVIFAGSGNRPARNNAEVVMSIDNSDRSAPSAFNDSEALEISRRIEREAGSVYRINGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146 +R D L P++ I +RRR L+ Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166 Score = 39.5 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K T++ S GEQ + + + A T +PI +LDE+ A LD+ + Sbjct: 1056 GKKPQTLSLLSGGEQALTALALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1110 Query: 338 VTDI 341 + ++ Sbjct: 1111 LHEM 1114 >gi|328553510|gb|AEB24002.1| chromosome partition protein SMC [Bacillus amyloliquefaciens TA208] gi|328911698|gb|AEB63294.1| chromosome condensation and segregation SMC ATPase [Bacillus amyloliquefaciens LL3] Length = 1186 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++ + + F T VG NG GK+NI EAI ++ R R Sbjct: 1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITEAIRWVLGEQSARSLRGGK 60 Query: 61 YADVTRIGSPS 71 D+ GS S Sbjct: 61 MEDIIFAGSDS 71 >gi|302874774|ref|YP_003843407.1| chromosome segregation protein SMC [Clostridium cellulovorans 743B] gi|307690610|ref|ZP_07633056.1| chromosome segregation protein SMC [Clostridium cellulovorans 743B] gi|302577631|gb|ADL51643.1| chromosome segregation protein SMC [Clostridium cellulovorans 743B] Length = 1191 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 98/268 (36%), Gaps = 28/268 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K + + F+++A + T VG NG GK+NI +AI ++ + R Sbjct: 1 MYLKAIELRGFKSFADKTEIELKDGITAIVGPNGSGKSNISDAIRWVLGEQSVKNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 DV G+ A+V + +D + L+ R L IN+ R Sbjct: 61 MEDVIFAGTAYRKPVGLAQVALILDNSDHGLPLDYSQVTISRRLFRSGDSEYYINNTKCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K ++ + SG S ERR L+ + ++ R + E Sbjct: 121 LKDIHELFMDTGIGKEGYSIISQGKIEALLSGSSDERRELLEEAAGIVK--YKSRKNESE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + N + S+ E ++ L ++ + E + SL + Sbjct: 179 KKL---NLTEQNIVRLNDILSTYEERLGPLEIE-SEKAKEFLKLSESLKNNEISLMIDSV 234 Query: 224 IKLSLTGFLDGK-FDQSFCALKEEYAKK 250 K+ ++ + Q ALKE Y K Sbjct: 235 EKIQSKLEVNKEALKQQEEALKEIYEDK 262 >gi|146282218|ref|YP_001172371.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri A1501] gi|145570423|gb|ABP79529.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri A1501] Length = 1162 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 50/324 (15%), Positives = 106/324 (32%), Gaps = 44/324 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKSIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108 DV GS + T A +E + +D I + R R S +N V Sbjct: 61 MTDVIFNGSNTRKPVTQASIELIFDNSDGTLTGEYAAFAEISIRRRVTRDSQNTYFLNGV 120 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159 R D + + L P I + R F++ + Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAGI 170 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 ++ R + + + + + + ++ +++ E K Sbjct: 171 SKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQSAEKYQEYKAEERQLKA 230 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH-------RSD 272 ++ G+ +Q + + + + R D+ R G H + Sbjct: 231 QLSALRWQALNEQVGQREQVIGDQEVAFEALVAEQRSADASIERLRDGHHELSERFNQVQ 290 Query: 273 LIVDYCDKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 291 GRFYSVGGDIARVEQSIQHGQQRL 314 >gi|119490636|ref|ZP_01623041.1| Exonuclease SbcC [Lyngbya sp. PCC 8106] gi|119453801|gb|EAW34958.1| Exonuclease SbcC [Lyngbya sp. PCC 8106] Length = 1029 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 9 FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L + F +Y L F HT G NG GK+++LEAI++ + R A+ D+ + Sbjct: 5 KLTLKNFLSYREASLDFSGLHTACICGSNGAGKSSLLEAITW-AIWGSSRAATEDDIIHL 63 Query: 68 GSPSFFSTFARV 79 G FA + Sbjct: 64 GEMEAQVNFAFI 75 Score = 36.4 bits (83), Expect = 7.4, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%) Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 L+ + +D + + R ++ + L ++ S+ Q E ++ AR + Sbjct: 793 LNEQIQQLDRQIQHRRQQMDQTLSQ----LGSLKQQQAYLESLNTQQNEQKQQLETARRQ 848 Query: 204 M--INALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQ-SFCALKEEYAKKLFDGRKMDS 259 + L+ + +Q ++ L + + S L ++ + GR S Sbjct: 849 YRVYSELAQAFGKNGIQALMIENVLPQLEAETNQILSRLSANQLHIQFITQ-RAGRSNKS 907 Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-PILL 318 ++T D+++ S GE + I LA A+L++ G A +L+ Sbjct: 908 SKKKTAKLIDTLDILIADAQGTRPYETYSGGEAFRINFAIRLALAKLLAQRAGTALQMLI 967 Query: 319 LDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDS 357 +DE D + + L + I S +T T Sbjct: 968 IDEGFGTQDAEGCSRLIAAINAISSDFACILTVTHMPHLKE 1008 >gi|134095191|ref|YP_001100266.1| hypothetical protein HEAR1999 [Herminiimonas arsenicoxydans] gi|133739094|emb|CAL62143.1| Conserved hypothetical protein, putative ATP-dependent endonuclease [Herminiimonas arsenicoxydans] Length = 594 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 59/355 (16%), Positives = 118/355 (33%), Gaps = 51/355 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63 +++ + + F N++ + + + VG+N VGK+N + + L PG R Sbjct: 1 MRVSRVRLINFANFSDVDVETGESI-VIVGENKVGKSNFIRGLQLILDPGLSER---DRQ 56 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + G F+ + + ++S+ L T D R L HL Sbjct: 57 L---GLEHFWDGLGE-DKVGATIEVSVDLTDFTNDPR-----------------LMAHLN 95 Query: 122 ISWLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 + P G M R RF + P + D+E ++ G N Sbjct: 96 DCVIDP-------GPPMVARLTYRFQPKAGLGRAP---ESLKDYEYVIFGGNDPEMRIGG 145 Query: 179 DSSWCSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGK 235 I+ Q+A + + R + L + + + I+ + + Sbjct: 146 ALRRMLPIDVQVALRDAEKDLASWRNSPLRPLIEDLAASLDDDAREEIQNQVDQAQRELA 205 Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTL-IGPHRSD-----LIVDYCDKAITIAHGST 289 + A E +++L +L + P R D L + + + S Sbjct: 206 GHEEVVATAERISERLIAIAGGQHAVPVSLGLAPTRVDALLRSLRLLIDNGVRGVGDASL 265 Query: 290 GEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 G ++ + + L RL+S +++E AHL + ++R + Sbjct: 266 GTANLIFLALKSLELDRLVSEGERDHTFFVVEEPEAHLHPHVQRLVYRYFLGTRA 320 >gi|49481889|gb|AAT66656.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + R Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L S E QMA R++++ +E E + Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|313500657|gb|ADR62023.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 631 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47 +++K L+IS ++N + L FD + +FVG NG GK+N+ EA+ Sbjct: 1 MRLKLLSISHYKNLKNFNLEFDGESFVDLFVGKNGSGKSNLFEAL 45 >gi|254572810|ref|XP_002493514.1| Component of the condensin complex, essential SMC chromosomal ATPase family member [Pichia pastoris GS115] gi|238033313|emb|CAY71335.1| Component of the condensin complex, essential SMC chromosomal ATPase family member [Pichia pastoris GS115] Length = 1133 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D+Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYATRTVISGWDSQFNAITGLNGSGKSNILDAICFVLGISSMTTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E L IS+ + + + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFDNSDTDKSPIGFEKLPSISVTRQIVLGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + L + + + + + Sbjct: 120 HRAQQQTVLQLFQSVQLNINNPNFLIMQG 148 >gi|218187327|gb|EEC69754.1| hypothetical protein OsI_39293 [Oryza sativa Indica Group] Length = 1246 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 +I L + F++Y + + T +G NG GK+N+++AISF+ R R A Sbjct: 15 RIHRLEVENFKSYKGTQTIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLK 74 Query: 63 DVT 65 D+ Sbjct: 75 DLI 77 >gi|170744955|ref|YP_001773610.1| chromosome segregation protein SMC [Methylobacterium sp. 4-46] gi|168199229|gb|ACA21176.1| chromosome segregation protein SMC [Methylobacterium sp. 4-46] Length = 1144 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L I F+ + + + T +G NG GK+N++EA+ ++ S + R + Sbjct: 1 MRLTRLRIVGFKTFVEPSEVPIEPGLTGIIGPNGCGKSNLVEALRWVMGESSHKSLRASG 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDRS-VRCLQINDV 108 DV GS S ++ A ++ + R DR ++N Sbjct: 61 MDDVIFSGSGGRPGRSHAEVTLSLDNSARTAPAAFNGADALDVTRRIDRGAGSTYRVNGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145 +R D L P+M R + + RRR L+ Sbjct: 121 EVRARDVQLLFADASTGARSPAMVRQGQVAEMIAAKPQARRRVLE 165 >gi|195027327|ref|XP_001986535.1| GH20475 [Drosophila grimshawi] gi|193902535|gb|EDW01402.1| GH20475 [Drosophila grimshawi] Length = 1176 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 96/275 (34%), Gaps = 33/275 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + +K L + F++Y + FD + T G NG GK+NIL+++ F +S + R + Sbjct: 1 MYVKKLVLDGFKSYGKRTEIDGFDPEFTAITGLNGSGKSNILDSVCFVLGISNLQNVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +IS+ + + L IN Sbjct: 61 ALQDLVYKNGQAGITKATVTIVFDNTNAAQCPPGYEKCREISVTRQVVVGGKNKFL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMID 161 +++ + + V + + + M+ + L + A + D Sbjct: 120 KLVQNKKVQDFFCSMQLNVNNPNFLIMQGKIQQVLNMKPKEVLSMIEEAAGTSMYKSKRD 179 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + + + E + ++ ++ K+ R + + E Sbjct: 180 ATKTLIEK----KEAKVRETSM-LLDEEVLPKLEKLRKERAAY-QEYQKTVRDI---EFL 230 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 HI +S T QS A +++ ++ R+ Sbjct: 231 THIHISATYLKLDDALQSVEANEQKIEHRITTCRE 265 >gi|325474162|gb|EGC77350.1| hypothetical protein HMPREF9353_01700 [Treponema denticola F0402] Length = 366 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 16/101 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS------------P 52 +K L IS FR + +L Q + VG N GKT++LEA+ LS Sbjct: 1 MKFDELQISNFRGIDNAKLKKLEQVNLIVGKNNSGKTSLLEAMFLLSGMSNPELLLSINT 60 Query: 53 GRGFRRASYADV--T--RIGSPSFFSTFARVEGMEGLADIS 89 R + A+ D + ++ G+E A IS Sbjct: 61 FRSLKLANDNDFKYIFYNLNMDKSIKLSGKISGIERRATIS 101 >gi|299536777|ref|ZP_07050085.1| chromosome partition protein smc [Lysinibacillus fusiformis ZC1] gi|298727789|gb|EFI68356.1| chromosome partition protein smc [Lysinibacillus fusiformis ZC1] Length = 1193 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 95/267 (35%), Gaps = 39/267 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L + F+++ + + F T VG NG GK+N+ +AI ++ + R A Sbjct: 1 MFLKRLEVIGFKSFAERIGIDFVPGVTAVVGPNGSGKSNVTDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS S F ++ + S + R R +N+ R Sbjct: 61 MEDVIFAGSDSRKPLNFAEVTLILDNTDEQLAFSYTEVSVTRRVYRSGDSEYLLNNQQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + +RR + ++ ++ Sbjct: 121 LKDITDLFMDSGLGKEAFSIISQGRVDEILNSRPDDRRSIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222 +R + D + ++ + EL R+E + +S +YVQ Sbjct: 172 --IRKKKAEHKLVETDENLYRVLDI-LHEL-----DNRLEPLEMQASSARDYVQMSSELK 223 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAK 249 +++ QS ALKEE+ + Sbjct: 224 DFDIAILVHDFRNCAQSLHALKEEFTE 250 >gi|310778882|ref|YP_003967215.1| chromosome segregation protein SMC [Ilyobacter polytropus DSM 2926] gi|309748205|gb|ADO82867.1| chromosome segregation protein SMC [Ilyobacter polytropus DSM 2926] Length = 1170 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 + +K + I+ F+++A + L F+ T VG NG GK+NIL+AI ++ + + R Sbjct: 1 MHLKAVEINGFKSFAEKINLDFNTGITSIVGPNGSGKSNILDAILWVLGEQSYKNIRAKE 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV G + + A V +D + LE D + R L IND R Sbjct: 61 SRDVIFSGGKNKKPKSLAEVSLYIDNSDRVLPLEIDDIKVTRRLHKTGENQYLINDTKAR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|315498141|ref|YP_004086945.1| chromosome segregation protein smc [Asticcacaulis excentricus CB 48] gi|315416153|gb|ADU12794.1| chromosome segregation protein SMC [Asticcacaulis excentricus CB 48] Length = 1154 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 ++ + L +S F+++ + T VG NG GK+N+LEA+ ++ R A Sbjct: 1 MQFQRLKLSGFKSFVDASEFRIEPGLTGIVGPNGCGKSNLLEALRWVMGATSAKAMRGAG 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108 DV GS ++ ++ LA + + R DR ++N Sbjct: 61 MEDVIFAGSDKRPARNWAEVTLTIDNSARLAPQPFTDHPVLDIARRIDRGQGSTYKVNGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145 +R D L P++ R + + RRR L+ Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIAAKPQNRRRVLE 165 >gi|226323112|ref|ZP_03798630.1| hypothetical protein COPCOM_00884 [Coprococcus comes ATCC 27758] gi|225208302|gb|EEG90656.1| hypothetical protein COPCOM_00884 [Coprococcus comes ATCC 27758] Length = 148 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 ++I+ ++I FRN+ + F + T+ +G N VGKTN+L A+ L Sbjct: 1 MRIEKIHIKGFRNFEDEEIFFQPK-TLIIGANDVGKTNLLYALRIL 45 >gi|168029501|ref|XP_001767264.1| condensin complex component SMC1 [Physcomitrella patens subsp. patens] gi|162681519|gb|EDQ67945.1| condensin complex component SMC1 [Physcomitrella patens subsp. patens] Length = 1247 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 +I+ L I F++Y + T +G NG GK+N+++AISF+ R R A Sbjct: 9 RIERLEIENFKSYKGHQIVGPFKNFTAIIGPNGAGKSNLMDAISFVLGVRSMQLRGAQLK 68 Query: 63 DV 64 D+ Sbjct: 69 DL 70 >gi|291543886|emb|CBL16995.1| hypothetical protein RUM_08090 [Ruminococcus sp. 18P13] Length = 539 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 + I L + ++ + + + + IFVG+N GK+ ILE +S ++ G+ Sbjct: 1 MYISKLIVKNYKLLKEVNIDLNEKINIFVGENDSGKSTILEVLSIITSGK 50 >gi|257215854|emb|CAX83079.1| Structural maintenance of chromosomes protein 2 [Schistosoma japonicum] Length = 568 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-RRA 59 + IK L I F++Y + FD Q G NG GK+NIL+AI FL R A Sbjct: 1 MYIKSLVIDGFKSYCQRTEIDGFDPQFNAITGLNGSGKSNILDAICFLLGITNLSHVRAA 60 Query: 60 SYADVTRIGSPSFF------STFARVE------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + + F V+ G E +++I + + L IN Sbjct: 61 NLHELVYKCGQAGINKATVSAVFDNVDKSQSPYGYEQFDELTITKQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + + V + + Sbjct: 120 TNATTTRVHDLFHSVQLNVNNPHFLIMQG 148 >gi|220928146|ref|YP_002505055.1| chromosome segregation protein SMC [Clostridium cellulolyticum H10] gi|219998474|gb|ACL75075.1| chromosome segregation protein SMC [Clostridium cellulolyticum H10] Length = 1190 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + ++ L I F+++A + L F+ T VG NG GK+NI +A+ L + R + Sbjct: 1 MYLRKLEIQGFKSFADKISLDFNNGITAVVGPNGSGKSNISDAVRWVLGEQSAKTLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ G+ F ++ + +S T R R IN R Sbjct: 61 MEDIIFAGTEHRKPVGFAEVSLTIDNTDNYLPVSYSEVTVTRRVYRSGESEYYINKTSCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|195334479|ref|XP_002033905.1| GM20175 [Drosophila sechellia] gi|194125875|gb|EDW47918.1| GM20175 [Drosophila sechellia] Length = 1179 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 18/124 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + +K L + F++Y + FD + T G NG GK+NIL++I F +S + R + Sbjct: 1 MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + +G E +IS+ + + L IN Sbjct: 61 ALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVTRQVVVGGKNKFL-ING 119 Query: 108 VVIR 111 +++ Sbjct: 120 KLVQ 123 >gi|194466492|ref|ZP_03072479.1| chromosome segregation protein SMC [Lactobacillus reuteri 100-23] gi|194453528|gb|EDX42425.1| chromosome segregation protein SMC [Lactobacillus reuteri 100-23] Length = 1187 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 109/304 (35%), Gaps = 29/304 (9%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++ L + F+++A + F+ T VG NG GK+NI+EAI ++ + R Sbjct: 1 MQLLSLTLDGFKSFAQKTTIKFEPGMTGIVGPNGSGKSNIIEAIQWVMGEQSAHHLRGDR 60 Query: 61 YADVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIR 111 ADV GS + LA +L IND +R Sbjct: 61 MADVIFNGSSDRKPLNRALVSITLDNSDHYLASEFTELTITRKIYRNGDSEYLINDQNVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+G ++RR ++ + ++++ E Sbjct: 121 LKDITDLFIDSGLGRESFSIISQGRIEEIFNGKPIDRRGIIETVAG--VAKYKKNKETAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL-IMEYVQKENFP 222 + + + + S +E Q+ L + + + + +++ Q Sbjct: 179 KRL---TTTMENLNRVNDIISELEKQIEPL-EEQSAIAQDYLEQKKQFDVLDRTQTVRHY 234 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-SMSRRTLIGPHRSDLIVDYCDKA 281 L K +Q+ +K+ + D +++D +R + + L ++ Sbjct: 235 DEYYEKLTKLGAKLEQAEAMVKDYQGQAGHDRQQLDNLKQKRQQLNATKDRLQAIILNQT 294 Query: 282 ITIA 285 IA Sbjct: 295 EAIA 298 >gi|19922276|ref|NP_610995.1| SMC2 [Drosophila melanogaster] gi|5815438|gb|AAD52673.1|AF179287_1 SMC2 [Drosophila melanogaster] gi|7303132|gb|AAF58197.1| SMC2 [Drosophila melanogaster] Length = 1179 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 18/124 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + +K L + F++Y + FD + T G NG GK+NIL++I F +S + R + Sbjct: 1 MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + +G E +IS+ + + L IN Sbjct: 61 ALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVTRQVVVGGKNKFL-ING 119 Query: 108 VVIR 111 +++ Sbjct: 120 KLVQ 123 >gi|332665393|ref|YP_004448181.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332334207|gb|AEE51308.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 647 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 22/45 (48%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + I I F++ + L F+ I G N GKT +LEA+S Sbjct: 1 MYIHKFQIKNFKSIKDITLYFNKGLNIITGVNNSGKTTVLEALSL 45 >gi|327441089|dbj|BAK17454.1| chromosome segregation ATPase [Solibacillus silvestris StLB046] Length = 1193 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++ + + F T VG NG GK+N+ +AI L + R A Sbjct: 1 MFLKRLEVVGFKSFAERIGIDFVPGVTAVVGPNGSGKSNVTDAIRWVLGEQSAKSLRGAK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV GS S F ++ + I + + R RS +N+ R Sbjct: 61 MEDVIFAGSESRRALNFAEVTLVLDNTDEQVAIPYTEVSVTRRVYRSGESEYLLNNQQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L K +D I + +RR + Sbjct: 121 LKDITDLFMDSGLGKEAFSIISQGRVDEILNSRPDDRRSIFE 162 >gi|291566231|dbj|BAI88503.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 438 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 ++I L ++ FR + F + + VG NGVGK+ IL+ I + Sbjct: 1 MQINQLTLTNFRGFEQAEFEFKSGMNLLVGINGVGKSTILDVIRIM 46 >gi|323466306|gb|ADX69993.1| Cell division protein Smc [Lactobacillus helveticus H10] Length = 1189 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F+ T VG NG GK+NI EAI ++ + + R + Sbjct: 1 MPLTELVLDGFKSFADRTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGEASAKSLRGMN 60 Query: 61 YADVTRIGSP 70 DV GS Sbjct: 61 MKDVIFAGSQ 70 >gi|313891756|ref|ZP_07825361.1| DNA repair protein RecN [Dialister microaerophilus UPII 345-E] gi|313119750|gb|EFR42937.1| DNA repair protein RecN [Dialister microaerophilus UPII 345-E] Length = 558 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 98/262 (37%), Gaps = 32/262 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+IS F + + T+F G+ G GK+ +++A+S L+ G+ R ++ + R Sbjct: 2 LRSLHISNFAIIKDIEMELGDGVTVFTGETGSGKSILVDALSLLA-GK--RGSTD--LIR 56 Query: 67 IGSPSF------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRV 112 G F S + E + DI I + C +N ++ Sbjct: 57 SGEDFFCVEGIFSINKSIVSLLSEFEVNDDNEDIIISRKMNKSGKSTCT-VNGFFCSVKK 115 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG---- 168 ++E+ K L + + F R++ + ++ ++ Sbjct: 116 LEEIGKKLFRFHEQYDNTDLLNSD------FCKRIIDNFSVEIKSAWNEYSKIYSDWKTT 169 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 ++++ + + ++ + E +I AR+ + S + + +N+ I+ L Sbjct: 170 KSKIEKLNKEEQEYQRKLDVLLWET-QQIEDARI-CLEEDSKIAQKLSILQNYERIQDGL 227 Query: 229 TGFLDGKFDQSFCALKEEYAKK 250 + +++ K A+K Sbjct: 228 QTVSNILSEENGIQDKLSVAEK 249 >gi|331246889|ref|XP_003336075.1| structural maintenance of chromosomes protein 3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309315065|gb|EFP91656.1| structural maintenance of chromosomes protein 3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1221 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 10/117 (8%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60 + I+ L I F++Y F + VG NG GK+N AI FL R Sbjct: 1 MHIESLTIQGFKSYRDATSVEHFSPGVNVVVGRNGSGKSNFFSAIRFLLNDQYGSLTRED 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 + GS + + A VE + +D R + I + DE + Sbjct: 61 RQSLLHEGSDNNSTFSAFVEAVFDNSDQ------RFPTGKSQVIIRRTIGSKKDEYS 111 Score = 38.0 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 8/90 (8%) Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLIS------NTTGFAPILLLDEISAHLDEDKRN 332 D+ + I S G++ +V + +++ AP L DEI A+LD D+R Sbjct: 1095 DEGLRIQQLSGGQKSLVALATKDGPIYVLNWVVFAIQKCDPAPFYLFDEIDANLDPDRRT 1154 Query: 333 ALFRIVTDIG--SQIFMTGTDKSVFDSLNE 360 ++ ++ ++G +Q+ T + + ++ Sbjct: 1155 SVAAMIGELGKEAQMICTTFRPEMLEHADQ 1184 >gi|55823212|ref|YP_141653.1| chromosome segregation SMC protein [Streptococcus thermophilus CNRZ1066] gi|55739197|gb|AAV62838.1| chromosome segregation SMC protein [Streptococcus thermophilus CNRZ1066] Length = 1177 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 101/284 (35%), Gaps = 37/284 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKSIEMQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ ++ +G +I++E I+ +R Sbjct: 61 MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIAGVGETIRVERHIYRNGDNDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ +RR + + ++ R + E Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNAKPEDRRAIFEEAAGILK--YKIRKKETE 178 Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKIN---IARVEMINALSSLIM--- 213 + L Y +E Q A + R ++N L I Sbjct: 179 SKLNQTQDNLDRLEDIIYELDGQVKPLEKQAATAKCYLELNGERRQTLLNLLVHDIEVGK 238 Query: 214 --EYVQKENFPHIKLSLTGFLDG--KFDQSFCALKEEYAKKLFD 253 +E+ +K LT + + + + LK++ + L Sbjct: 239 SDLTQTQEDLAEVKDKLTSYYEERHRLETENQELKQKRHQILEQ 282 >gi|145220266|ref|YP_001130975.1| chromosome segregation protein SMC [Prosthecochloris vibrioformis DSM 265] gi|145206430|gb|ABP37473.1| chromosome segregation protein SMC [Chlorobium phaeovibrioides DSM 265] Length = 1178 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 98/266 (36%), Gaps = 33/266 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60 + + + + F+++A+ +R+ FD T VG NG GKTN+++AI L + R A Sbjct: 1 MYLSKIELFGFKSFANRVRISFDKGLTAIVGPNGCGKTNVVDAIRWVLGEQKSSLLRSAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 ++ GS SF +E + T R R +N V R Sbjct: 61 MENIIFNGSRNLKPLSFTEVSLTIENTRNILPTQYTEVTVTRRIYRNGESDFLLNQVPCR 120 Query: 112 VVDELNKHLRISWLVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L+ + I S S ER + + + ++ Sbjct: 121 LKDILDLFTDTGMGSDAYSVIELKMIEEIISNKSEERMKLFEEAAG---------ITRYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + R L D + ++ ++E+ K+ ++++ A ++ ++E Sbjct: 172 QRRKQTFRQLESASRD---LARVDDLLSEVEKKVRSLKLQVRKAEKLRELKTHRRELDLQ 228 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAK 249 + L K + ++++E + Sbjct: 229 LSWHTMESLQEKIEPLNRSIEQEELQ 254 Score = 37.6 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 69/185 (37%), Gaps = 24/185 (12%) Query: 180 SSWCSSIEAQMAELGVKINIARVEM------INALSSLIMEYVQKENFPHIKLS-LTGFL 232 + +S+EAQ + G +A E ++ L+ + E + + Sbjct: 964 TETLASLEAQCDQFGAVNELALDEYQAEKERLDFLTEQKNDLYAAETQLRETIEEINRTA 1023 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD--------KAITI 284 KF+ +F A+++ + + + + L+ D + + + K ++I Sbjct: 1024 LEKFEATFHAVRKNFTTIFQELFDPEDEA--DLLIHTADDPLESHIEIVAKPKGKKPLSI 1081 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--G 342 S GE+ + + + + + +P +LDE+ A LD+ +++ Sbjct: 1082 EQLSGGEKALTALSLLFSIYLV-----KPSPFCILDEVDAPLDDGNVGRFIKLLKKFENN 1136 Query: 343 SQIFM 347 +Q + Sbjct: 1137 TQFII 1141 >gi|321478769|gb|EFX89726.1| structural maintenance of chromosome protein 2 [Daphnia pulex] Length = 1195 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 85/272 (31%), Gaps = 36/272 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-RRA 59 + IK + + F++Y + FD G NG GK+NIL+AI FL R Sbjct: 1 MYIKSMVVDGFKSYGQRTEINGFDPMFNAITGLNGSGKSNILDAICFLLGITNLSHVRAT 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G V G E ++++ + + L IN Sbjct: 61 NLQELVYKSGQAGVTKATVTVTFDNKDKKQSPIGYEHYDEVTVTRQVVIGGKNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMID 161 ++ + + V + + M+ L + A R Sbjct: 120 SNVQNNRVQDFFRSVQLNVNNPHFLIMQGRITKVLNMKPPEILAMIEEAAGTRMYEAKKQ 179 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++ + + + ++ K+ R + + + Sbjct: 180 --QALK---TIEKKEEKIKEINDILSEEVTPTLNKLREERTQYL-------QFQKSEREL 227 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 H+ + +++ +KEEY + L + Sbjct: 228 EHLNRQYVAYRFLSLEKANAQVKEEYNEILKE 259 >gi|289434649|ref|YP_003464521.1| DNA repair protein RecN [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170893|emb|CBH27435.1| DNA repair protein RecN [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 563 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 23/201 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG D R Sbjct: 2 LQEMTIKNFAIIESLSLSFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----STDFIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G +F A +E D + LE RS + +IN ++ Sbjct: 57 HGEERLELQGLFALAEDNFACRNALLENGIDATDDMVVLERSLFRSGKNSCRINGKLVTT 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L + + RF + +++ +++ + + Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPALTKYQANFKEYQTISKE 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189 + + Q Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197 >gi|269797768|ref|YP_003311668.1| chromosome segregation protein SMC [Veillonella parvula DSM 2008] gi|269094397|gb|ACZ24388.1| chromosome segregation protein SMC [Veillonella parvula DSM 2008] Length = 1184 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L + F+++A + F T +G NG GK+NI +A+ ++ S R R Sbjct: 1 MQLLRLELKGFKSFADKTIVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ S + + DI + + R R+ IN R Sbjct: 61 AEDIIFSGTEKRKPMSAAEVTLVFDNSDQQLDIDMAEVAITRRIYRTGESEFLINKRSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141 + D L + +D I + ERR Sbjct: 121 LKDIHLLLADTGLGRDSMAIIGQNRIDAILNSKPEERR 158 >gi|166363552|ref|YP_001655825.1| exonuclease SbcC-like protein [Microcystis aeruginosa NIES-843] gi|166085925|dbj|BAG00633.1| exonuclease SbcC homolog [Microcystis aeruginosa NIES-843] Length = 1007 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 99/268 (36%), Gaps = 30/268 (11%) Query: 9 FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L + F +Y L F HT G NG GK+++LEAI++ G R + DV Sbjct: 5 QLTLKNFLSYREAVLDFRGLHTACICGANGAGKSSLLEAITWAIWGES-RTSIADDVIHA 63 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD---------ELNK 118 GS F G E I + + IND R + ++N Sbjct: 64 GSDYARVDFEFSYGGEIYKIIRSRHRGGKASGLDFQVINDQSFRPLSGKSIKDTQAQINT 123 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFA---IDPRHRRRMIDFER--LMRGRNRLL 173 +L+I + F + R+ D + + ++ +R ++ + + + Sbjct: 124 YLKI------DHKTFINSAYLRQGQADEFMKQPPSGRKQILAELLQLDRYEILANKAKDI 177 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 ++ + S + + +L ++ + + + LS+ I + Q++ + +L Sbjct: 178 SKQFDGQSLQIEQQVETIKLRLQEKNSYQQQLQELSTQINQINQEQEVNNRRLQQL---- 233 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMS 261 Q ++ + K+L R+ + Sbjct: 234 ----QGEENQRQNWEKQLQWQREQERAL 257 >gi|308456383|ref|XP_003090636.1| hypothetical protein CRE_25955 [Caenorhabditis remanei] gi|308262100|gb|EFP06053.1| hypothetical protein CRE_25955 [Caenorhabditis remanei] Length = 386 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 1 MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57 + + + L I F++Y L ++ T +G NG GK+N+++AISF+ R R Sbjct: 10 LPGKGHLDTLEIENFKSYKGFHLIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPGSLR 69 Query: 58 RASYADVTRIGSP 70 Y D+ G+P Sbjct: 70 VKKYTDLI-HGAP 81 >gi|70944837|ref|XP_742306.1| chromosome segregation protein [Plasmodium chabaudi chabaudi] gi|56521210|emb|CAH75549.1| chromosome segregation protein, putative [Plasmodium chabaudi chabaudi] Length = 634 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 + I+ + + F++Y + F Q G NG GK+N+L+AI F+ R Sbjct: 1 MHIEEIILDGFKSYTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVNR 60 Query: 61 YADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104 ++ + G ++ ++ RD +++ + Sbjct: 61 LDELIYKQGQAGITKGSVTIKFNNEEKPSPLQEPYRDMKTITITR 105 >gi|332705175|ref|ZP_08425257.1| exonuclease SbcC [Lyngbya majuscula 3L] gi|332356125|gb|EGJ35583.1| exonuclease SbcC [Lyngbya majuscula 3L] Length = 1006 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 28/195 (14%) Query: 9 FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L + F +Y L F HT G NG GK+++LEAI++ G+ R AS D+ Sbjct: 5 QLTLKNFLSYRDATLDFRGLHTACICGQNGAGKSSLLEAITWAIWGQS-RVASENDIIHT 63 Query: 68 GSPSFFSTFAR---------VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 G+ F + S++ + + L V + + Sbjct: 64 GAKEVRVDFIFQNNQQTHRIIRTRHRKQGTSLEFQVETPNGFKSLTQKGVRATQLLIIAN 123 Query: 119 H-LRISWLVPSM-------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 L + S D ER++ L ++ ++ +E+L Sbjct: 124 LKLDYDTFINSSYLRQGRADEFMVRRPSERKQILADLL---------KLDQYEKLADQAK 174 Query: 171 RLLTEGYFDSSWCSS 185 L + Sbjct: 175 DLSKQLKGQVEQLEQ 189 >gi|183220805|ref|YP_001838801.1| chromosome segregation ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910905|ref|YP_001962460.1| chromosome segregation ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775581|gb|ABZ93882.1| Chromosome segregation ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779227|gb|ABZ97525.1| Chromosome segregation ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 927 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K LNI F+ +A + FD T VG NG GK+NI++++ ++ +G R Sbjct: 1 MHLKSLNIVGFKTFADETEINFDPGFTAVVGPNGSGKSNIVDSVKWVFGEKSAKGLRGEK 60 Query: 61 YADVTRIGSPS 71 DV G+ S Sbjct: 61 MDDVIFHGTES 71 >gi|156230203|gb|AAI52522.1| Smc2 protein [Danio rerio] Length = 449 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 42/286 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++Y + FD G NG GK+NIL++I FL S R Sbjct: 1 MYIKSIVLEGFKSYAERTEINGFDPFFNAITGLNGSGKSNILDSICFLLGISNLSQVRAT 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I+I + + L IN Sbjct: 61 NLQDLVYKNGLAGITKATVSITFDNSNKKQSPLGFETHDEITITRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + + V + + + + L+ ++ I+ RM + + Sbjct: 120 VNANNLRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + + ++ ++ K+ R + QK Sbjct: 178 KISAQKTIEKKDAKLKEIQT-ILDEEITPAMEKLKEERASYLE---------YQKLMREI 227 Query: 224 IKLS--LTGFLDGKFDQSFCALKEEYAK------KLFDGRKMDSMS 261 LS +L +++ EE + KL + K + Sbjct: 228 EHLSRLYVAYLFVCAEETKLKSNEELQEMQSSIAKLQENMKQNEAK 273 >gi|320103298|ref|YP_004178889.1| SMC domain-containing protein [Isosphaera pallida ATCC 43644] gi|319750580|gb|ADV62340.1| SMC domain protein [Isosphaera pallida ATCC 43644] Length = 403 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 119/369 (32%), Gaps = 54/369 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-----RGF---RR 58 I +++ F++ L T+ VG NG GK+++L + FL +G+ R+ Sbjct: 9 IHSIHVENFKSLVDCDLKLAP-LTLLVGLNGEGKSSVLHLLDFLGQLMRGDIKGWLDRRK 67 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 + D+ P+ R++ E + DE + Sbjct: 68 WTSGDLISKFKPNHPMIKFRLDIEVDRQRFLWSGEYDHREHACLT----ETVDFTDEHGE 123 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 H I P + R +++F +L++ F Sbjct: 124 HDEIKLTDP------TETEQTSRCLFPKVIFQYQ-----------------GSILSQIRF 160 Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 D + + + RV ++ LS M +E+ I L F + Sbjct: 161 DPEPDHEKLRILKPFVMAM--KRVRSLDLLSPSAMRRRARESDGSIGPEGE-QLSAFFHE 217 Query: 239 SFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST----GEQ 292 +E+ K+L + GRK+ + G + +++ + I S G Sbjct: 218 LSQETREKLEKQLSEVYGRKIKIETSVMKAGWKKLEVLETFTALNDPITIESRHVNDGLL 277 Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352 +++ + LA + + DEI ++ + L D G QI +T Sbjct: 278 RLLAI---LAELET------DNTLPMFDEIENGINSELIAFLLERFRDSGKQILVTTHSP 328 Query: 353 SVFDSLNET 361 + + L + Sbjct: 329 MILNHLEDD 337 >gi|317131323|ref|YP_004090637.1| chromosome segregation protein SMC [Ethanoligenens harbinense YUAN-3] gi|315469302|gb|ADU25906.1| chromosome segregation protein SMC [Ethanoligenens harbinense YUAN-3] Length = 1193 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 92/294 (31%), Gaps = 42/294 (14%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K L I F+++ L F T VG NG GK+NI +AI ++ + R Sbjct: 1 MYLKSLTIQGFKSFPDKTVLTFGPGITAVVGPNGSGKSNISDAIRWVLGEMSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+P + V+ + + + T R R ++ +R Sbjct: 61 MEDVIFGGTPVRRPLGYAEVSLTVDNSDHALPVESEEVTVTRRYYRSGESEYRLGGAQVR 120 Query: 112 VVDEL-------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 + D H + + G E RR + I F + Sbjct: 121 LRDIYELFMDTGLGHDGYAVISQGRIAEIVGARSEDRREIFEEAAGI------AKFRFRK 174 Query: 165 LMRGRNRLLTEGY--FDSSWCSSIEAQMAELGVKINIARVEM--------------INAL 208 R TE S +EA++ L + A+ + ++ L Sbjct: 175 AEAERRLASTEENLVRLRDILSELEARVGPLKEQAEKAKRYLTLAEEKRTLEVGLWLHLL 234 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 E EN I + L+ K D + E Y + + D + Sbjct: 235 DVRREELRAGENKLEIARARHDELERKLDTVERTIDEAYMQGQKAAAEADRLRG 288 >gi|194014505|ref|ZP_03053122.1| chromosome segregation protein SMC [Bacillus pumilus ATCC 7061] gi|194013531|gb|EDW23096.1| chromosome segregation protein SMC [Bacillus pumilus ATCC 7061] Length = 1186 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 106/282 (37%), Gaps = 44/282 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++A + + F T VG NG GK+NI +AI ++ + R Sbjct: 1 MFLKRLDVIGFKSFAQRVTVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS S ++ + I + + R RS IN+ +R Sbjct: 61 MEDIIFAGSDSRKRVNLAEVTLTLDNEDHFLPIDFHEVSVTRRVYRSGESEFLINNQSVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ I S + ERR + + Sbjct: 121 LKDIIELFMDSGLGKEAFSIISQGKVEEILSSKAEERRSIFEEA--------AGVLKYKT 172 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222 R + N+L + +E + EL ++ R++ +S+ +Y+Q KE Sbjct: 173 RKKKAENKLFET----QDNLNRVEDILHELEDQVEPLRMQ-----ASIAKDYLQKKEELE 223 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 +++++LT + + L E + K D M + T Sbjct: 224 NVEIALTVHDIEALHEKWTTLGEA-----VERFKQDEMKQST 260 >gi|154505347|ref|ZP_02042085.1| hypothetical protein RUMGNA_02862 [Ruminococcus gnavus ATCC 29149] gi|153794390|gb|EDN76810.1| hypothetical protein RUMGNA_02862 [Ruminococcus gnavus ATCC 29149] Length = 1185 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 101/287 (35%), Gaps = 36/287 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + + F+++A+ ++ F T VG NG GK+N+ +A+ ++ + R S Sbjct: 1 MYLKCIEVQGFKSFANRIKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ S+ S ++ + + T + R IN R Sbjct: 61 MQDVIFSGTENRKPLSYASVAITLDNSDHQLPVDYSEVTVTRKLYRSGESEYLINGTGCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +D+I SG ERR D + + R+ + + Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKTLS-LK 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL------GVKINIARVEM----INALSSLIM 213 +L +N L S S +E Q+ L + + E+ I+ Sbjct: 180 KLEEEQNNLTRV----SDILSELEKQIGPLEKQSAVAKEYLKKKEELKVYDIHMFLLETE 235 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + K+ +T + KE+Y ++D+ Sbjct: 236 RLKDQLQGLEEKVRITSDEMEAAKSRYEETKEQYQAVEIQVEEIDAA 282 Score = 37.6 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 98/287 (34%), Gaps = 35/287 (12%) Query: 80 EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139 E E ++I ++ + + Q + + + L+ H+ +D+ L + Sbjct: 877 ESTEIFSEIETEITGQTENREALNQKHKAFLEQREALSGHMA------ELDKELFRLESQ 930 Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG----- 194 + + ++ I + ++ R+ LT+ F ++ ++ +LG Sbjct: 931 KEDCEEASEKQMNYMWEEYEITYNGALKLRDETLTDRAFMKKQILFLKGEIRKLGNVNVN 990 Query: 195 ----VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 K R E + ++E KE I L + +F++ F + +E+ Sbjct: 991 AIEDYKQVAERYEFLKEQHEDLVE--AKETLIQIVAELDAAMRAQFEEQFARISKEFDAV 1048 Query: 251 LFDGRKMDSMSRRTLIGPHRSDLI---VDYCDKAITIAH-----GSTGEQKVVLVGIFLA 302 + TL D++ + + S GE+ + + + A Sbjct: 1049 FKQLF---GGGKGTLELMEDEDILEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA 1105 Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 +P LLDEI A LD+ + + + + +Q + Sbjct: 1106 -----IQNLKPSPFCLLDEIEAALDDSNVDRFAQYLHKLTKHTQFIV 1147 >gi|317150906|ref|XP_001823906.2| structural maintenance of chromosomes 5 smc5 [Aspergillus oryzae RIB40] Length = 1201 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 14/217 (6%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62 I + +++F Y S + + +G NG GK+ ++ AI L G R Sbjct: 122 AIVRIKVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPAHLGRAKDPG 181 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------ 116 + + G G + + + D + IN L Sbjct: 182 EFVKHGCREATIEIELAGGPHFRRNPVVTRTIKRDGNKSSFTINGKTASRTQVLKLAQSF 241 Query: 117 -NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT- 174 + + +P ++ ++ L+ A D + +R R + L Sbjct: 242 SIQIDNLCQFLPQD-KVSEFAALTPIELLNSTQRAAAGAEMIEWHDNLKQLRARQKKLQA 300 Query: 175 EGYFDSSWCSSIEA--QMAELGVKINIARVEMINALS 209 + D +++E +M V+ R E+ + Sbjct: 301 DNKSDKDLLTNLEERQEMQRADVERMRQRAEIKRKIE 337 >gi|289597054|ref|YP_003483750.1| chromosome segregation protein SMC [Aciduliprofundum boonei T469] gi|289534841|gb|ADD09188.1| chromosome segregation protein SMC [Aciduliprofundum boonei T469] Length = 1184 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 26/171 (15%) Query: 3 NRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RR 58 + + +K + + F+++ RL F T G NG GK+NI +AI F+ + R Sbjct: 5 DGMYLKAIELENFKSFGRKTRLEFKEGFTAISGPNGSGKSNITDAILFVLGPKSSKKIRA 64 Query: 59 ASYADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ------------- 104 D+ G + + + RV + D + L+ + + R ++ Sbjct: 65 QRLTDLIYNGGKNGRPADYCRVSLIFDNRDRVLPLDEDEVKLTRYIKRANNELGYNSYFY 124 Query: 105 INDVVIRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFLDRM 147 IND R+ D + + + RI +ERR LD + Sbjct: 125 INDEQARLQDFNSILIHAKIEADGYNFVQQGDVTRIVEMTPVERRTILDDI 175 >gi|284051594|ref|ZP_06381804.1| exonuclease SbcC [Arthrospira platensis str. Paraca] Length = 631 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 8 KFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + F +Y L F HT G NG GK+++LEAI++ G+ R + D+ + Sbjct: 4 QKLTLKNFLSYRDASLDFSGLHTACICGPNGAGKSSLLEAIAWSIWGQS-RAGTEDDLIQ 62 Query: 67 IGSPSFFSTFARV 79 IG F + Sbjct: 63 IGETQMRVDFIFI 75 >gi|223993035|ref|XP_002286201.1| chromosomal protein,like chromosomal protein xcap-e [Thalassiosira pseudonana CCMP1335] gi|220977516|gb|EED95842.1| chromosomal protein,like chromosomal protein xcap-e [Thalassiosira pseudonana CCMP1335] Length = 1217 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 20/145 (13%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA + FD G NG GK+NIL++I F ++ R Sbjct: 1 MHIKEIVVDGFKSYAHRTVIAGFDPHFNAITGLNGSGKSNILDSICFVLGITNLSQVRAG 60 Query: 60 SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107 + +++ + G + G E ++++ + + L IN Sbjct: 61 NLSELVYKQGQAGVNKASVTIVFDNEDESSSPVGYEQCKEVNVTRQVLIGGKSKYL-ING 119 Query: 108 --VVIRVVDELNKHLRISWLVPSMD 130 V L ++++ P Sbjct: 120 RNSPAGQVANLFHSVQLNVNNPHFL 144 >gi|191638621|ref|YP_001987787.1| DNA repair and genetic recombination protein N [Lactobacillus casei BL23] gi|239631994|ref|ZP_04675025.1| DNA repair ATPase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066679|ref|YP_003788702.1| DNA repair ATPase [Lactobacillus casei str. Zhang] gi|190712923|emb|CAQ66929.1| DNA repair and genetic recombination protein N [Lactobacillus casei BL23] gi|239526459|gb|EEQ65460.1| DNA repair ATPase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439086|gb|ADK18852.1| DNA repair ATPase [Lactobacillus casei str. Zhang] gi|327382663|gb|AEA54139.1| DNA repair protein recN [Lactobacillus casei LC2W] gi|327385857|gb|AEA57331.1| DNA repair protein recN [Lactobacillus casei BD-II] Length = 566 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 84/249 (33%), Gaps = 37/249 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62 ++ L I +F L L F T G+ G GK+ I++A+ L+ GRG R + Sbjct: 2 LQELAIHDFAIIDHLALSFQPGMTALTGETGAGKSIIIDAVGLLAGGRGSVDFIRTGTTK 61 Query: 63 DVTR--IGSPSFFSTFARVEG---MEGLADISIKLETRDDRSVRCL-QINDVVIRV---- 112 + +T A+++ M+ + ++ L+ R+ R + ++N ++ Sbjct: 62 ASLEGLFDAQENPATEAKLQAYGVMDPDQNDTVLLQREIFRTGRNVCRVNGHLVNTTTLK 121 Query: 113 ------VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 VD ++ + P F + + ++ D++R + Sbjct: 122 AIGETLVDIHGQNEHQQLMHPETHLGLLDS------FAGDDLLKLRQQYADVYHDYQRTL 175 Query: 167 ---RGRNRLLTEGYFDSSWC--SSIEAQMAEL----GVKINIARVEM--INALSSLIMEY 215 + + E E Q A L + R + ++S + E Sbjct: 176 RAVKQKQANEQEWAQRLDMLKFQVGEIQSANLQPHEDTDLTAERERLANFQKINSALQES 235 Query: 216 VQKENFPHI 224 + + Sbjct: 236 YALLSDEEV 244 >gi|317052010|ref|YP_004113126.1| chromosome segregation protein SMC [Desulfurispirillum indicum S5] gi|316947094|gb|ADU66570.1| chromosome segregation protein SMC [Desulfurispirillum indicum S5] Length = 1150 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 101/314 (32%), Gaps = 62/314 (19%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +K K L IS F++++ L F T VG NG GK+NI +AI ++ + R AS Sbjct: 1 MKFKRLEISGFKSFSERSVLDFRDGITAIVGPNGCGKSNISDAIRWVMGEQRAKDLRGAS 60 Query: 61 YADVTRIG-------------------------SPSFFSTFARVEGMEGLADISIKLETR 95 ADV G S R M G+++ I Sbjct: 61 MADVIFAGTQRRSPAQMAEVKLKLESDSFPYPYSEFHEVEVIRRLTMNGVSEYRINGAAS 120 Query: 96 DDRSVRCLQIN---DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRF--------- 143 + VR L ++ + E K +I P R + +F Sbjct: 121 RLKDVRGLFMDSGVGTRAMSIIEQGKIHQIVTSRPEDRRGVIEEAAGINKFKESKKEALA 180 Query: 144 -----------LDRMVFAIDPRHRRRMIDFERLMRGR----------NRLLTEGYFDSSW 182 + + ++ ++ + ++ R ++L++ YF++S Sbjct: 181 KLEDVNNNLLRVQDVTQEVEKQYHYLKKQAAKALQHRELTSRIYELEVQVLSKQYFEASN 240 Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + + + + + + L + Q KL+ F Q Sbjct: 241 LLTEALEQSRHVQEQLEEQKKHMAELQEQLQREHQHIAQMEAKLTYHTRQRESFLQEKAL 300 Query: 243 LKEEYAKKLFDGRK 256 L+++ R+ Sbjct: 301 LEQKQQSIQESMRQ 314 >gi|308460454|ref|XP_003092531.1| CRE-HIM-1 protein [Caenorhabditis remanei] gi|308253107|gb|EFO97059.1| CRE-HIM-1 protein [Caenorhabditis remanei] Length = 1203 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 1 MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57 + + + L I F++Y L ++ T +G NG GK+N+++AISF+ R R Sbjct: 10 LPGKGHLDTLEIENFKSYKGFHLIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPGSLR 69 Query: 58 RASYADVTRIGSP 70 Y D+ G+P Sbjct: 70 VKKYTDLI-HGAP 81 >gi|288560414|ref|YP_003423900.1| RecF/RecN/SMC N terminal domain-containing protein [Methanobrevibacter ruminantium M1] gi|288543124|gb|ADC47008.1| RecF/RecN/SMC N terminal domain-containing protein [Methanobrevibacter ruminantium M1] Length = 566 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 25/48 (52%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 + + I FR+ + F+ + +G+N GKT++++++ L + Sbjct: 2 LINIKIKNFRSLKDFEMNFNPGLNVIIGENDAGKTSLIDSLKILFGLK 49 >gi|294793532|ref|ZP_06758669.1| putative cell division protein Smc [Veillonella sp. 3_1_44] gi|294455102|gb|EFG23474.1| putative cell division protein Smc [Veillonella sp. 3_1_44] Length = 1184 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L + F+++A + F T +G NG GK+NI +A+ ++ S R R Sbjct: 1 MQLLRLELKGFKSFADKTIVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ S + + DI + + R R+ IN R Sbjct: 61 AEDIIFSGTEKRKPMSAAEVTLVFDNSDQQLDIDMAEVAITRRIYRTGESEFLINKRSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141 + D L + +D I + ERR Sbjct: 121 LKDIHLLLADTGLGRDSMAIIGQNRIDAILNSKPEERR 158 >gi|282849042|ref|ZP_06258431.1| chromosome segregation protein SMC [Veillonella parvula ATCC 17745] gi|282581317|gb|EFB86711.1| chromosome segregation protein SMC [Veillonella parvula ATCC 17745] Length = 1184 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L + F+++A + F T +G NG GK+NI +A+ ++ S R R Sbjct: 1 MQLLRLELKGFKSFADKTIVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ S + + DI + + R R+ IN R Sbjct: 61 AEDIIFSGTEKRKPMSAAEVTLVFDNSDQQLDIDMAEVAITRRIYRTGESEFLINKRSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141 + D L + +D I + ERR Sbjct: 121 LKDIHLLLADTGLGRDSMAIIGQNRIDAILNSKPEERR 158 >gi|222617555|gb|EEE53687.1| hypothetical protein OsJ_37035 [Oryza sativa Japonica Group] Length = 1221 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 +I L + F++Y + + T +G NG GK+N+++AISF+ R R A Sbjct: 15 RIHRLEVENFKSYKGTQTIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLK 74 Query: 63 DVT 65 D+ Sbjct: 75 DLI 77 >gi|156408029|ref|XP_001641659.1| predicted protein [Nematostella vectensis] gi|156228799|gb|EDO49596.1| predicted protein [Nematostella vectensis] Length = 1216 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYAD 63 ++ L + F++Y + + + T +G NG GK+N+++AISF+ R + D Sbjct: 4 LERLELENFKSYKGNHTIGPFYRFTAIIGPNGCGKSNLMDAISFVFGERTSSLRVKTVKD 63 Query: 64 VTRIGSPSF--FSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVV 109 + G+P ++ A+V + D I+ + S +I++ V Sbjct: 64 LI-HGAPVGKPVASSAKVTAVYAEEDGTEIRFTRKIVGSGTESRIDNKV 111 >gi|15615050|ref|NP_243353.1| chromosome segregation SMC protein [Bacillus halodurans C-125] gi|10175107|dbj|BAB06206.1| chromosome segregation SMC protein [Bacillus halodurans C-125] Length = 1188 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L I F+++ + + F T VG NG GK+NI + I ++ + R + Sbjct: 1 MFLKRLEIVGFKSFAEQMTVEFVKGVTAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ GS +F ++ + I + R R +N R Sbjct: 61 MQDIIFAGSDTRKPLNFAEISLVLDNEDQHIPIDYSEVSVTRRVYRSGESEYLLNRQPCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 13/163 (7%) Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252 + R E + + ++E KE ++ + + +F SF ++ + K+LF Sbjct: 996 ERVSERYEFLKDQQADLVE--AKETLHNVIEEMDEEMTKRFHDSFTEIQAHFRVVFKELF 1053 Query: 253 DGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 G + D + L+ + K + S GE+ + + + + R Sbjct: 1054 GGGEADLVLTEPDQLLTTGVDIMARPPGKKRQHLGLLSGGERALTAIALLFSILRF---- 1109 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDK 352 P +LDE+ A LDE + + + D Q F+ T + Sbjct: 1110 -RPVPFCVLDEVEAALDEANVSRFAKFLKDFSDQTQFIVITHR 1151 >gi|330502844|ref|YP_004379713.1| condensin subunit Smc [Pseudomonas mendocina NK-01] gi|328917130|gb|AEB57961.1| condensin subunit Smc [Pseudomonas mendocina NK-01] Length = 1162 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 49/324 (15%), Positives = 102/324 (31%), Gaps = 44/324 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKSIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLAD----------ISIKLETRDDR-SVRCLQINDV 108 DV GS + T A +E + +D I + R R +N Sbjct: 61 MTDVIFNGSNTRKPVTQASIELIFDNSDNSLVGEYAAFAEISIRRRVTRDGQNTYFLNGT 120 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159 R D + + L P I E R F++ + Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEELRNFIEE---------AAGI 170 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 ++ R + + + + + ++ +++ E K Sbjct: 171 SKYKERRRETENRIRRTQENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLKA 230 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-- 277 ++ G +Q + + + + R D+ R G H + Sbjct: 231 QLLALRWQGLNQQVGSREQVIGDQEVAFEALVAEQRSADAAIERLRDGHHELSERFNLVQ 290 Query: 278 -----CDKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 291 GRFYSVGGDIARVEQSIQHGQQRL 314 >gi|323388484|gb|ADX60531.1| RecN [Geobacillus sp. NTU 03] Length = 573 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 90/270 (33%), Gaps = 39/270 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARV-------------EGMEGLADISIKLETRDDRSVRCL-QINDVVI-- 110 G+ + + +D I L + + + +IN ++ Sbjct: 57 FGAEKAEIERLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTT 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 V+ ++ L + LD + + R + R Sbjct: 117 AVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RAVYERY 170 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L S E QMA R++++ +E E +L Sbjct: 171 EELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDERLMEEK 218 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 F + + AL++ Y +GR +DS+ Sbjct: 219 VRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|313885017|ref|ZP_07818769.1| chromosome segregation protein SMC [Eremococcus coleocola ACS-139-V-Col8] gi|312619708|gb|EFR31145.1| chromosome segregation protein SMC [Eremococcus coleocola ACS-139-V-Col8] Length = 1191 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 21/175 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + + + ++ F+++A + FD T VG NG GK+N+ EAI ++ + R + Sbjct: 1 MHLSRVEMTGFKSFADKTVIEFDQGMTAVVGPNGSGKSNLSEAIRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIG-SPSFFSTFARVEGMEGLADISIK--------LETRDDRSVRCLQINDVVIR 111 DV G A+V + D + + + IN+ +R Sbjct: 61 MEDVIFNGTQDRKAVNIAKVTLVLNNEDHYLDSDYSEIAIARSYNRNGDSSYTINNETVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158 + D L K+ +++IF ERR + ++R+ Sbjct: 121 LKDIVDLLLDSGLGKNSFSIISQGQVEQIFLNKPEERRTIFEEAAGVQKYQYRKN 175 >gi|255527619|ref|ZP_05394481.1| ATP-binding protein [Clostridium carboxidivorans P7] gi|296187662|ref|ZP_06856056.1| hypothetical protein CLCAR_3159 [Clostridium carboxidivorans P7] gi|255508691|gb|EET85069.1| ATP-binding protein [Clostridium carboxidivorans P7] gi|296047619|gb|EFG87059.1| hypothetical protein CLCAR_3159 [Clostridium carboxidivorans P7] Length = 56 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48 + IK + + F + + R+ F I G+NG GKT +L+AI Sbjct: 1 MSIKSIELRNFTVFKNFRVNFSKGINIITGENGTGKTQLLKAIY 44 >gi|260101400|ref|ZP_05751637.1| cell division protein Smc [Lactobacillus helveticus DSM 20075] gi|260084740|gb|EEW68860.1| cell division protein Smc [Lactobacillus helveticus DSM 20075] Length = 1189 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + + L + F+++A + F+ T VG NG GK+NI EAI ++ + + R + Sbjct: 1 MPLTELVLDGFKSFADRTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGEASAKSLRGMN 60 Query: 61 YADVTRIGSP 70 DV GS Sbjct: 61 MKDVIFAGSQ 70 >gi|169622619|ref|XP_001804718.1| hypothetical protein SNOG_14536 [Phaeosphaeria nodorum SN15] gi|160704810|gb|EAT78076.2| hypothetical protein SNOG_14536 [Phaeosphaeria nodorum SN15] Length = 990 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 88/260 (33%), Gaps = 20/260 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ + F + L + +G NG GK+ +L A++ G+ R + Sbjct: 28 IEEIQCINFMCHEHLTVTLGPLINFIIGHNGSGKSAVLTALTICLGGKATATNRAQNLKS 87 Query: 64 VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRC-LQINDVVIRVV--- 113 + + G S R++ LA SI +E +RS ++ D R + Sbjct: 88 LIKEG-KDHSSVQVRIKNQGALAYKPDQYGDSITVERHFNRSGTSGFKLRDQNGRELQLE 146 Query: 114 ---DELNKHLRISWLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + + + L+ + I G R++ D A RM E + Sbjct: 147 VLSKDYQQIEQSLELMNTRTEISKGDIGRLRKKMEDLAAKARRAESLERMRAKETTIAH- 205 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229 L + + +E+++ ++ + R ++ S + + +++ Sbjct: 206 QALWAAVQEAEAGVAEVESELEKVSA-VIERRKALVEEASQAYERSEEARDAATLRVQEA 264 Query: 230 GFLDGKFDQSFCALKEEYAK 249 L + LKE + K Sbjct: 265 TELMTPAKEEVHELKEAFTK 284 >gi|257075417|ref|ZP_05569778.1| hypothetical protein Faci_00065 [Ferroplasma acidarmanus fer1] Length = 641 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 12/114 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHT----IFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 + I + I FR Y ++ + F++ + I +GDNG GKT L AI++ G+ + Sbjct: 1 MYINNIIIKNFRLYKNVNIDFNSANNKNIAIIIGDNGKGKTTFLNAIAWCLYGKESNTSK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-INDVVIRVV 113 + S + A+ + E +SI + + ++ +N+ R Sbjct: 61 NIGL------SLINNIAKNDN-ENEIRVSIIMTDKQKNKFEIVRALNNTNNRPQ 107 >gi|150865365|ref|XP_001384551.2| Chromosome segregation and condensation [Scheffersomyces stipitis CBS 6054] gi|149386621|gb|ABN66522.2| Chromosome segregation and condensation [Scheffersomyces stipitis CBS 6054] Length = 1171 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K+ L I F++YA+ + +D Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVDELIIDGFKSYATRTVISGWDGQFNAITGLNGSGKSNILDAICFVLGIASMATVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E + IS+ + S + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFDNSEVSKSPIGFENCSTISVTRQIILGGSSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + LN + + + + + Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148 >gi|332531078|ref|ZP_08406995.1| hypothetical protein HGR_14019 [Hylemonella gracilis ATCC 19624] gi|332039463|gb|EGI75872.1| hypothetical protein HGR_14019 [Hylemonella gracilis ATCC 19624] Length = 562 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 +K+ + + FR+ + + + VG N GKTN+L AI L G Sbjct: 1 MKLAEIRVRNFRSIETEQRLPIPGSMTLVGPNNSGKTNLLRAIQLLFTG 49 >gi|329936102|ref|ZP_08285901.1| hypothetical protein SGM_1393 [Streptomyces griseoaurantiacus M045] gi|329304420|gb|EGG48299.1| hypothetical protein SGM_1393 [Streptomyces griseoaurantiacus M045] Length = 606 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 60/355 (16%), Positives = 118/355 (33%), Gaps = 30/355 (8%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + FR+ A + + + TI G N GK+ +L A++FL R + D Sbjct: 1 MYLTRFSACGFRSLAHVENIPVSSPTILAGHNDGGKSAVLTALAFL--LGNHR-LTDEDR 57 Query: 65 TRIGSPSFFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 T + AR VEG + D + + T +VR +I + + Sbjct: 58 TYEQAEGSVGRCARTWVEG-DFRLDTTEQAATGLPTAVRIRRIAEEGQPPQWQYFGSRPA 116 Query: 123 SWLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + + R+ G + F A+ + + + + + Sbjct: 117 DSRLHDLSRLLKGELAELVSEFSLSPAGALKDDLLQALTAYAATAPQ----VEQWQSLPK 172 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----PHIKLSLTGFLDGKFD 237 ++ G K + ALSS Y++ E I+ +T L+ + D Sbjct: 173 ELQERLPRLLPFGGKDERPDDAVRTALSSCYETYLEDETLQGRVKEIETEITQRLEKEAD 232 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS-TGEQKVVL 296 +++ + + K + + G R+ L V D S G + + Sbjct: 233 SLCRHIRQHCREFVGVQVKPEVSFKG---GFKRAPLEVSKADGEPVDLTRSGQGSNRRIA 289 Query: 297 VGIF-----------LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 + ++ LA A + I++ DE HLD + + I+ Sbjct: 290 LAVWEWTSNLLESGELAAAGEGNQAEPTQTIVVYDEPDTHLDYRHQRTVMDIIRK 344 >gi|240103229|ref|YP_002959538.1| Chromosome segregation protein SMC (smc1) [Thermococcus gammatolerans EJ3] gi|239910783|gb|ACS33674.1| Chromosome segregation protein SMC (smc1) [Thermococcus gammatolerans EJ3] Length = 1192 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 97/282 (34%), Gaps = 40/282 (14%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 I+ + + F++Y + + T VG NG GK+NI +A+ F+ G R Sbjct: 4 IEKIEMKGFKSYGNRKVVVPLSKGFTAIVGANGSGKSNIGDAVLFVLGGLSAKAMRATRI 63 Query: 62 ADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRVV 113 +D+ G+ + +A V D ++ + R + + Sbjct: 64 SDLIFAGNRAEPPAKYAEVAMYFNNEDRGFPIDEDEVVIKRRVYPDGRSTYWLNGKRATR 123 Query: 114 DELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDR--MVFAIDPRHRRRMIDF 162 E+ L + + P + ERR +D + D + + + + Sbjct: 124 SEILDLLSAAMISPEGYNLVLQGDITKFIKMSPTERRLIIDEISGIAEYDAKKEKALDEL 183 Query: 163 ERL--MRGRNRLLTEGYFDSSWCSSIEAQ------MAELGVKINIARVEMINALSSLIME 214 ++ R LL + +E + +L K+ ARV ++ + E Sbjct: 184 KKAEENLARVDLLIKEV--KKQLDKLEKERNDALRYLDLKEKVERARVALL------LGE 235 Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 + E ++ ++G+ ++ LK + + R+ Sbjct: 236 IKRLELLLEESMNKDSSIEGEIEKVEAELKALVKEIIAKERE 277 Score = 39.9 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 17/173 (9%) Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 + + E + +E+ + ++ E KE+ + G F ++ A Sbjct: 971 LEPVNMKAIEDFEVVERRYLELSSKREQVLAE---KESIEEFIAEIEGQKREVFMKTLEA 1027 Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLIVDYCDKAITIAHG-STGEQKVVL 296 + + +++ LF ++ L P ++ K + S GE+ + Sbjct: 1028 IAKNFSE-LFAKLSPGGSAKLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTA 1086 Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFM 347 + A AP L DEI AHLD+ + ++ + Q + Sbjct: 1087 LAFVFA-----IQRYKPAPFYLFDEIDAHLDDANVKRVADLIKESSQSSQFIV 1134 >gi|113477327|ref|YP_723388.1| exonuclease SbcC [Trichodesmium erythraeum IMS101] gi|110168375|gb|ABG52915.1| exonuclease SbcC [Trichodesmium erythraeum IMS101] Length = 1016 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 11/117 (9%) Query: 8 KFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + F +Y L F HT G NG GK+++LEAI++ G R A+ D+ Sbjct: 4 QKLQLKNFLSYHQATLDFTGLHTACICGPNGAGKSSLLEAIAWAIWGNS-RAATEDDIIS 62 Query: 67 IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 +G + + + G +++ + + L V Sbjct: 63 LGEKETRVDFTFSTHGNIYRVIRGRRRGQSPTLEFQVNTGSQFKSLTQKGVRATQQS 119 >gi|317498508|ref|ZP_07956802.1| RecF/RecN/SMC N terminal domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894201|gb|EFV16389.1| RecF/RecN/SMC N terminal domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 469 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 84/224 (37%), Gaps = 28/224 (12%) Query: 4 RIKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRA 59 + +K + ++ F+++A + F+ T VG NG GK+N+ +A+ ++ + R + Sbjct: 2 DMYLKSIEVNGFKSFAHKMIFKFEHGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGS 61 Query: 60 SYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVI 110 DV G+ ++ + I + T R R IN Sbjct: 62 RMEDVIFSGTELRKPMGSAYVAITLDNSDHSLPIQFEEVTVARRVYRSGESEYLINGSAC 121 Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 R D + K +++I SG ERR D + +++ ++ Sbjct: 122 RRKDIVELFFDTGIGKEGYSIIGQGQIEQILSGKPEERRELFDEAAGIVK--YKKNKLET 179 Query: 163 ERLMR-GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 ++ + R L+ + + +E Q+ L + AR ++ Sbjct: 180 QKSLEIERENLVRV----TDILTELERQVGPLKKQSERAREYLL 219 >gi|157692274|ref|YP_001486736.1| chromosome segregation protein Smc [Bacillus pumilus SAFR-032] gi|157681032|gb|ABV62176.1| chromosome segregation protein Smc [Bacillus pumilus SAFR-032] Length = 1186 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 107/284 (37%), Gaps = 44/284 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++A + + F T VG NG GK+NI +AI ++ + R Sbjct: 1 MFLKRLDVIGFKSFAQRVTVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS S ++ + I + + R RS IN+ +R Sbjct: 61 MEDIIFAGSDSRKRVNLAEVTLTLDNEDHFLPIDFHEVSVTRRVYRSGESEFLINNQSVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ I S + ERR + + Sbjct: 121 LKDIIDLFMDSGLGKEAFSIISQGKVEEILSSKAEERRSIFEEA--------AGVLKYKT 172 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222 R + N+L + +E + EL ++ R++ +S+ +Y+Q KE Sbjct: 173 RKKKAENKLFET----QDNLNRVEDILHELEDQVEPLRMQ-----ASIAKDYLQKKEELE 223 Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266 +++++LT + + L E + K D M + T I Sbjct: 224 NVEIALTVHDIEALHEKWTTLGEA-----VERFKQDEMKQSTEI 262 >gi|282878675|ref|ZP_06287444.1| DNA repair protein RecN [Prevotella buccalis ATCC 35310] gi|281299220|gb|EFA91620.1| DNA repair protein RecN [Prevotella buccalis ATCC 35310] Length = 553 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 81/264 (30%), Gaps = 47/264 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62 +K L+I F L + F ++ G+ G GK+ IL AI L + + R Sbjct: 2 LKQLHIQNFTLIDELDINFHPGFSVITGETGAGKSIILGAIGLLKGNRADTKLIRSGKEK 61 Query: 63 DVTRIGSP----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDEL 116 + + F + + D ++ E R IND + + EL Sbjct: 62 CLIEAHFDVSKYNLLHFFEENDIDDDATDCIVRREIYSSGKSRAF-INDTPVPLATMKEL 120 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFERLMRGRNRLLT 174 + L + + + + +D + +++ ++++ Sbjct: 121 GEQL--IDIHSQHQNLLLNQEDFQLQVVDIITQDSKSLAQYQTCYQEYKKA--------- 169 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 Q+ EL I +R E+++ + + L Sbjct: 170 ------------AEQLEELKADIAKSREN---------EEFLRFQYGELAQAQLVEGEQE 208 Query: 235 KFDQSFCALK--EEYAKKLFDGRK 256 +Q L+ EE L+ + Sbjct: 209 TIEQELATLEHAEEIKTALYQSEQ 232 >gi|27227803|emb|CAD59410.1| SMC2 protein [Oryza sativa] Length = 1175 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 44/314 (14%), Positives = 103/314 (32%), Gaps = 38/314 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA +V FD G NG GK+NIL++I F ++ R R A Sbjct: 1 MHIKEICLEGFKSYAGRTVVSGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S ++ + G + G E +I++ + + L IN Sbjct: 61 SLQELVYKQGQAGVTKATVSIVFDNSDRSRSPLGYEDSPEITVTRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 + + + V + + + + L+ ++ ++ RM + + Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQGRIT--KVLNMKPPEILSMLEEAAGTRMYEMK 177 Query: 164 R--LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++ L + ++ ++ K+ R + + M + + Sbjct: 178 KEAALK---TLEKKQNKVDEINKLLDEEILPALEKLRKERCQYMK----WAMAHADLDRL 230 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 ++ + ++ K+ + +D + + D + Sbjct: 231 KRFCIAYEFVQAERVRDGALNDVKQIRAKIVE---LDESTEKLKSEIQEMDKNISNLAAE 287 Query: 282 ITIAHGSTGEQKVV 295 G GE K + Sbjct: 288 KEAKLG--GEMKTL 299 >gi|49481877|gb|AAT66650.1| DNA repair and genetic recombination protein [Geobacillus thermocatenulatus] Length = 573 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 91/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + + Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARYRAV 166 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + E S E QMA R++++ +E E + Sbjct: 167 YKR----YEELGNKLKKLSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|15899044|ref|NP_343649.1| hypothetical protein SSO2277 [Sulfolobus solfataricus P2] gi|284175289|ref|ZP_06389258.1| hypothetical protein Ssol98_11675 [Sulfolobus solfataricus 98/2] gi|13815577|gb|AAK42439.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261600791|gb|ACX90394.1| conserved hypothetical protein [Sulfolobus solfataricus 98/2] Length = 495 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 15/110 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGRGFRRAS 60 ++I +S FR+ + + L I VG NG GKTN+L +I LS G R Sbjct: 1 MRITEFYVSNFRSLSEVNLKDLGGFNIVVGYNGYGKTNLLSSIFLFVKNLSAGIEKRSIE 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDV 108 + F + +G + I I K+E + S + + N Sbjct: 61 DR------NQEFILLW---QGYDVSKPIMIGGKVEFSPEESNKIVGKNQK 101 >gi|326204788|ref|ZP_08194642.1| chromosome segregation protein SMC [Clostridium papyrosolvens DSM 2782] gi|325985000|gb|EGD45842.1| chromosome segregation protein SMC [Clostridium papyrosolvens DSM 2782] Length = 1190 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + ++ L I F+++A + L F + T VG NG GK+NI +A+ L + R + Sbjct: 1 MYLRKLEIQGFKSFADKISLDFHSGITAVVGPNGSGKSNIGDAVRWVLGEQSAKTLRGSK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ F ++ + +S T R R IN R Sbjct: 61 MEDVIFAGTEHRKPVGFAEVSLTIDNDDNYLPVSYSEVTITRRVYRSGESEYYINKTSCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|284996493|ref|YP_003418260.1| hypothetical protein LD85_0088 [Sulfolobus islandicus L.D.8.5] gi|284444388|gb|ADB85890.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5] Length = 495 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 15/110 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGRGFRRAS 60 ++I +S FR+ + + L + VG NG GKTN+L +I LS G R Sbjct: 1 MRITEFYVSNFRSLSEVNLKDLGGFNVVVGYNGYGKTNLLSSIFLFIKNLSAGIEKRSVE 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDV 108 + F + +G + I I K+E + + + + N Sbjct: 61 DR------NQEFILLW---QGYDVSKPIMIGGKVEFSPEEANKIVGKNQK 101 >gi|301168368|emb|CBW27958.1| chromosome partition protein [Bacteriovorax marinus SJ] Length = 1264 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 27/168 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +K+K L I F+++ + FD T VG NG GK+NI++A+ ++ + R S Sbjct: 39 VKLKRLVIQGFKSFKDRTTIHFDDGITGIVGPNGCGKSNIVDALFWVMGEQSAKHLRGKS 98 Query: 61 YADVTRIGS----PSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVV 113 D+ GS P ++ V G + I I + + R L N + Sbjct: 99 MKDLIFAGSSKYNPGAYAEATLVLGNDDGKHIHIGNKVSSPSEIQLTRKLYRNGETEYRI 158 Query: 114 DEL---NKHLRISWLV-------------PSMDRIFSGLSMERRRFLD 145 + K ++ ++ ++R+ ERR ++ Sbjct: 159 NNYPARLKDIQEVFMDTGAGAKSYSIIAQGEINRLVQAKPEERRTMIE 206 >gi|300866185|ref|ZP_07110902.1| Exonuclease SbcC [Oscillatoria sp. PCC 6506] gi|300335819|emb|CBN56062.1| Exonuclease SbcC [Oscillatoria sp. PCC 6506] Length = 1044 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 8 KFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + F +Y L F HT G NG GKT++LEAI++ G R AS D+ Sbjct: 4 QQLTLKNFLSYRDATLDFRGLHTACICGPNGAGKTSLLEAIAWAIWGNC-RTASEDDIIH 62 Query: 67 IGSPSFFSTFA 77 IG F Sbjct: 63 IGETEVRVDFV 73 >gi|238618566|ref|YP_002913391.1| hypothetical protein M164_0087 [Sulfolobus islandicus M.16.4] gi|238379635|gb|ACR40723.1| conserved hypothetical protein [Sulfolobus islandicus M.16.4] Length = 495 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 15/110 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGRGFRRAS 60 ++I +S FR+ + + L + VG NG GKTN+L +I LS G R Sbjct: 1 MRITEFYVSNFRSLSEVNLKDLGGFNVVVGYNGYGKTNLLSSIFLFIKNLSAGIEKRSVE 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDV 108 + F + +G + I I K+E + + + + N Sbjct: 61 DR------NQEFILLW---QGYDVSKPIMIGGKVEFSPEEANKIVGKNQK 101 >gi|227829107|ref|YP_002830886.1| hypothetical protein LS215_0087 [Sulfolobus islandicus L.S.2.15] gi|229577907|ref|YP_002836305.1| hypothetical protein YG5714_0089 [Sulfolobus islandicus Y.G.57.14] gi|227455554|gb|ACP34241.1| conserved hypothetical protein [Sulfolobus islandicus L.S.2.15] gi|228008621|gb|ACP44383.1| conserved hypothetical protein [Sulfolobus islandicus Y.G.57.14] gi|323473575|gb|ADX84181.1| ATPase-like protein [Sulfolobus islandicus REY15A] gi|323476222|gb|ADX81460.1| ATPase-like protein [Sulfolobus islandicus HVE10/4] Length = 495 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 15/110 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGRGFRRAS 60 ++I +S FR+ + + L + VG NG GKTN+L +I LS G R Sbjct: 1 MRITEFYVSNFRSLSEVNLKDLGGFNVVVGYNGYGKTNLLSSIFLFIKNLSAGIEKRSVE 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDV 108 + F + +G + I I K+E + + + + N Sbjct: 61 DR------NQEFILLW---QGYDVSKPIMIGGKVEFSPEEANKIVGKNQK 101 >gi|27227801|emb|CAD59409.1| SMC1 protein [Oryza sativa] Length = 1264 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 +I L + F++Y + + T +G NG GK+N+++AISF+ R R A Sbjct: 15 RIHRLEVENFKSYKGTQTIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLK 74 Query: 63 DVT 65 D+ Sbjct: 75 DLI 77 >gi|167765552|ref|ZP_02437616.1| hypothetical protein CLOSS21_00046 [Clostridium sp. SS2/1] gi|167712737|gb|EDS23316.1| hypothetical protein CLOSS21_00046 [Clostridium sp. SS2/1] Length = 1185 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 84/223 (37%), Gaps = 28/223 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + ++ F+++A + F+ T VG NG GK+N+ +A+ ++ + R + Sbjct: 1 MYLKSIEVNGFKSFAHKMIFKFEHGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGSR 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ + I + T R R IN R Sbjct: 61 MEDVIFSGTELRKPMGSAYVAITLDNSDHSLPIQFEEVTVARRVYRSGESEYLINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 D + K +++I SG ERR D + +++ ++ + Sbjct: 121 RKDIVELFFDTGIGKEGYSIIGQGQIEQILSGKPEERRELFDEAAGIVK--YKKNKLETQ 178 Query: 164 RLMR-GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 + + R L+ + + +E Q+ L + AR ++ Sbjct: 179 KSLEIERENLVRV----TDILTELERQVGPLKKQSERAREYLL 217 >gi|297584009|ref|YP_003699789.1| chromosome segregation protein SMC [Bacillus selenitireducens MLS10] gi|297142466|gb|ADH99223.1| chromosome segregation protein SMC [Bacillus selenitireducens MLS10] Length = 1188 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 124/357 (34%), Gaps = 41/357 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L ++ F+++A L + F T VG NG GK+NI +AI ++ R R Sbjct: 1 MFLKRLELTGFKSFAEKLGIDFVPGVTAVVGPNGSGKSNISDAIRWVLGEQSARNLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 DV GS + A + + D + ++ + R L + E + Sbjct: 61 MEDVIFSGSDKRKALNMAEISLVLDNEDQHVPIDYSEVVVTRRLYRSGE-----SEYLLN 115 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 + L + +F + + F ++ + + + +L + Sbjct: 116 KQTCRLK-DITDLFMDSGLGKEAFSIIGQGRVEEILSSKSEERRMIFEEAAGVLKYKFRK 174 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG----- 234 + E ++A+ ++ R ++I+ L ++ + LS+ L+ Sbjct: 175 QAS----EKKLADTEDNLSRVR-DIIHELEQQTGPLEEQASVAKEYLSMKAELNELEAGV 229 Query: 235 ------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288 + + LK +Y + R+ + R + D ++ Sbjct: 230 TVKEIQELHAQWTNLKNDYDQVEDQKRQHEIDRDRLEQTVLTGREALQELDDELSE---- 285 Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345 +Q+ +L+ + G L +E + DE +R + +T + Q+ Sbjct: 286 --QQQQLLIA-----TEELEKAEGKKQ--LFEERLRNFDE-RRAQHEQEMTQLRDQL 332 >gi|303230837|ref|ZP_07317584.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] gi|302514597|gb|EFL56592.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] Length = 538 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 + I + I +++ A + + IFVG+N GK++ILEA+S + GR Sbjct: 1 MYITKIKILNYKSIADTIINLNKDMNIFVGENDAGKSSILEALSAVLMGR 50 >gi|256810946|ref|YP_003128315.1| SMC domain protein [Methanocaldococcus fervens AG86] gi|256794146|gb|ACV24815.1| SMC domain protein [Methanocaldococcus fervens AG86] Length = 642 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 28/44 (63%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 IK L + FR+ ++ + F+ T+ VG+N GKT+I++A+ + Sbjct: 2 IKKLMVENFRSLKNVEISFEDDITVLVGENDSGKTSIVDALKIM 45 >gi|116495115|ref|YP_806849.1| DNA repair ATPase [Lactobacillus casei ATCC 334] gi|227534870|ref|ZP_03964919.1| DNA repair protein RecN [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105265|gb|ABJ70407.1| DNA replication and repair protein RecN [Lactobacillus casei ATCC 334] gi|227187626|gb|EEI67693.1| DNA repair protein RecN [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 566 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 84/249 (33%), Gaps = 37/249 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62 ++ L I +F L L F T G+ G GK+ I++A+ L+ GRG R + Sbjct: 2 LQELAIHDFAIIDHLALSFQPGMTALTGETGAGKSIIIDAVGLLAGGRGSVDFIRTGTTK 61 Query: 63 DVTR--IGSPSFFSTFARVEG---MEGLADISIKLETRDDRSVRCL-QINDVVIRV---- 112 + +T A+++ M+ + ++ L+ R+ R + ++N ++ Sbjct: 62 ASLEGLFDAQENPATEAKLQAYGVMDPDQNDTVLLQREIFRTGRNVCRVNGHLVNTTTLK 121 Query: 113 ------VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 VD ++ + P F + + ++ D++R + Sbjct: 122 AIGETLVDIHGQNEHQQLMHPETHLGLLDS------FAGDDLLKLRQQYADVYHDYQRTL 175 Query: 167 ---RGRNRLLTEGYFDSSWC--SSIEAQMAEL----GVKINIARVEM--INALSSLIMEY 215 + + E E Q A L + R + ++S + E Sbjct: 176 RAVKQKQANEQEWAQRLDMLKFQVGEIQSANLQPHEDTDLTAERERLANFQKINSALQES 235 Query: 216 VQKENFPHI 224 + + Sbjct: 236 YALLSDEEV 244 >gi|190343123|gb|ACE75522.1| HP1079 [Helicobacter pylori] Length = 394 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 I+ + I F+N+ + ++ + I G N GK+N+LEA+ +L G+ Sbjct: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49 >gi|291539669|emb|CBL12780.1| condensin subunit Smc [Roseburia intestinalis XB6B4] Length = 1186 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 78/210 (37%), Gaps = 26/210 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A+ + F T VG NG GK+N+ +A+ L + R AS Sbjct: 1 MYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGAS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ G+ S+ ++ + + + T R R +N R Sbjct: 61 MQDIIFAGTENRKPLSYAYVAITLDNADHKLPVDYEEVTVARRVYRSGESEYLLNGNTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + K +++I +G ERR D + + R+ + Sbjct: 121 LKDVTELFYDTGIGKEGYSIIGQGQIEKILNGKPEERRELFDEAAGIVKYKKRKATAQ-K 179 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 +L R L+ S +E Q+ L Sbjct: 180 KLENERENLVRVN----DILSELERQVGPL 205 Score = 36.4 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%) Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 + +D+ L+ +R + D + + ++E + L + Y D S Sbjct: 917 ISELDKEVFRLNSQREKLNDAREYQTN----YMWQEYELTLHAAMDLRDDTYDDLSTLKK 972 Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 + AQ+ + K+ V I + Y + + L G ++ +++ Sbjct: 973 MIAQIRDEIRKLGDVNVNAIEDYKEISERYQFLKTQHDDLIEAEKTLIGIIEELDTGMRK 1032 Query: 246 EYAKKLFDGRK------MDSMSRR--TLIGPHRSDLI---VDYCDKAITIAHG-----ST 289 ++ +K + +K + TL D++ + + S Sbjct: 1033 QFMEKFAEIQKQFDTVFKELFGGGKGTLELVEDEDILECGIRIIAQPPGKKLQNMMQMSG 1092 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 GE+ + + + A +P LLDEI A LD+ + + + +Q + Sbjct: 1093 GEKSLTAIALLFA-----IQNLKPSPFCLLDEIEAALDDSNVTRFAKYLHKLTQNTQFIV 1147 >gi|291233666|ref|XP_002736773.1| PREDICTED: SMC6 protein-like [Saccoglossus kowalevskii] Length = 735 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 13/114 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + F ++ L F VG NG GK+ +L A+ G+ A VT Sbjct: 53 IERVTLKNFMCHSRLEFNFGPNVNFIVGRNGSGKSAVLTAMVVGLGGK-------ATVTN 105 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVI-RVVDELNK 118 GS S A ++ + A+++IKL R + + L N +V+ R + Sbjct: 106 RGS----SVKAFIKDGQSTAEVAIKLRNRGTDAFKSELYGNSIVVERKLSADGG 155 >gi|319791344|ref|YP_004152984.1| hypothetical protein Varpa_0653 [Variovorax paradoxus EPS] gi|315593807|gb|ADU34873.1| hypothetical protein Varpa_0653 [Variovorax paradoxus EPS] Length = 521 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 54/371 (14%), Positives = 107/371 (28%), Gaps = 47/371 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASYADV 64 I+ L +S F+ + +L L FD + + +GDN GK+++L A+ + G R + Sbjct: 4 IERLVLSNFKKFDNLELEFDPELNLLIGDNEAGKSSVLLALELVMSGSRSRVETIGLETL 63 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124 + F G + + L D + + N V+ I Sbjct: 64 LNADAVRAFQAGPCTVGRLPELFVEVYLSA-DKKPGLNGKNNSKVLERDGLRMSFEPILD 122 Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184 + + +R +R Sbjct: 123 FSKDIAEALKEDPTNFP--FEYYGVQFYTFGGEAYSSVKRHVRH---------------- 164 Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 +A +I+ EY + H+ + L+ + QS + Sbjct: 165 -----LAIDSSRIDSEYA---------AREYTRSVFAMHVDVGNRSRLENAYRQSKGGFE 210 Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304 ++L D + + +++L D I S G+ + I Sbjct: 211 NAQLRELNDKL---VDYKFGVRTSAKANLESDLVITEDEIPIESKGKGRQ--CFIK---T 262 Query: 305 RLISNTTGFAP---ILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSLNE 360 + G +LLL+E HL + L + + Q+F+ + L+ Sbjct: 263 EFALSKKGVKSGLDVLLLEEPENHLSHATMHQLIERIAQSVNKQLFIATHSSLISARLDL 322 Query: 361 TAKFMRISNHQ 371 + Q Sbjct: 323 RKAILLGEQGQ 333 >gi|217031595|ref|ZP_03437100.1| hypothetical protein HPB128_21g153 [Helicobacter pylori B128] gi|298736689|ref|YP_003729219.1| hypothetical protein HPB8_1198 [Helicobacter pylori B8] gi|216946795|gb|EEC25391.1| hypothetical protein HPB128_21g153 [Helicobacter pylori B128] gi|298355883|emb|CBI66755.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 394 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 I+ + I F+N+ + ++ + I G N GK+N+LEA+ +L G+ Sbjct: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49 >gi|198415697|ref|XP_002122639.1| PREDICTED: similar to Structural maintenance of chromosomes protein 6 (hSMC6) [Ciona intestinalis] Length = 1072 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 70/202 (34%), Gaps = 29/202 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 ++ +++ F + L + F VG NG GK+ +L AI G+ R S Sbjct: 39 LESISLRNFMCHTRLSMRFSGGVNFIVGHNGSGKSAVLTAIVIALGGKASSTSRGTSLKT 98 Query: 64 VTRIGSPSFFS-TFARVEGMEG--------LADISIKLETRDDRSVRCLQINDVVIRV-- 112 + + G+ S R G E + ++ + V+ Sbjct: 99 LIKTGTSSAVVEITLRNNGDESVKPEVYGPKITVERRISADGQSQYKIKSSTGKVVSTKK 158 Query: 113 ------VDELNKHL--RISWLVPSMDR--IFSGLSMERRRFL--DRMVFAIDPRHRRRMI 160 +DE+N H+ ++ L M + + S ++ +F + + +R Sbjct: 159 EDLLTILDEINLHVDNPLTCLNQEMSKNFLHSKNESDKYKFFLKSTQLDQMSRDYRFIKQ 218 Query: 161 D---FERLMRGRNRLLTEGYFD 179 + +++ + + + + D Sbjct: 219 QQITMKSVLKQKEKAIPDLKKD 240 >gi|307154953|ref|YP_003890337.1| chromosome segregation protein SMC [Cyanothece sp. PCC 7822] gi|306985181|gb|ADN17062.1| chromosome segregation protein SMC [Cyanothece sp. PCC 7822] Length = 1204 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + +S F+++ + + F T+ G NG GK+NIL+A+ F L+ +G R Sbjct: 2 VHIKRVELSHFKSFGGTTSIPFLPGFTVISGPNGSGKSNILDALLFCLGLASSKGMRAER 61 Query: 61 YADVTRIG 68 D+ Sbjct: 62 LPDLVNHN 69 >gi|113475243|ref|YP_721304.1| condensin subunit Smc [Trichodesmium erythraeum IMS101] gi|110166291|gb|ABG50831.1| condensin subunit Smc [Trichodesmium erythraeum IMS101] Length = 1219 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 94/252 (37%), Gaps = 21/252 (8%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK L ++ F+++ + + T+ G NG GK+NIL+A+ F LS +G R Sbjct: 2 VHIKCLELTNFKSFGGTTTIPLLPGFTVVSGPNGSGKSNILDALLFCLGLSTSKGMRAER 61 Query: 61 YADVT------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 D+ R + + +E + + +L + V ++ N R Sbjct: 62 LPDLVNNKLAGRKTVETIVTVTFDLEDLSSQKNGQNELGSVQP-QVPEVEENGYKTRETK 120 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 + + + S D + R R + + + +L N+L Sbjct: 121 DPFE------ITNSFDSLLEWSISRRLRVTKQGTYTSTYYMNGQPCTLSQLHEQLNQL-- 172 Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234 + + ++ + + + R E+I+ L+ + ++ +K + KL L + Sbjct: 173 -RVYAEGYNVVLQGDVTGIISMKSRERREIIDELAG-VAQFDRKISLAKEKLDLVKEQEE 230 Query: 235 KFDQSFCALKEE 246 K L+++ Sbjct: 231 KSRIVERELEKQ 242 >gi|332673215|gb|AEE70032.1| conserved hypothetical protein [Helicobacter pylori 83] Length = 381 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 I+ + I F+N+ + + I G+N GK+N+LEA+ L G+ Sbjct: 2 IQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEALYCL-VGKS 49 >gi|269105235|ref|ZP_06157928.1| hypothetical protein VDA_000056 [Photobacterium damselae subsp. damselae CIP 102761] gi|268160571|gb|EEZ39071.1| hypothetical protein VDA_000056 [Photobacterium damselae subsp. damselae CIP 102761] Length = 364 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 69/204 (33%), Gaps = 32/204 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I FR++ L + + + G N GKT +LEA + Sbjct: 2 LQHIKIRNFRSFKRLDIDRLGRINLISGKNNAGKTALLEAFQL---HVSNFAPNATHSIL 58 Query: 67 IGSPSFFSTFARVEGME-----------GLADISIKLETRDDRSV------RCLQINDVV 109 FFS A + + + + +E+ ++ ++ +D Sbjct: 59 SEREEFFSKNASRDDLSPLKHFFYGHTIDSTNTPLTIESNINKQELQFGRYSLVKEDDKY 118 Query: 110 IRVVD--ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERL 165 R D ++ +S+ P IF ++ R + ++ + + R RL Sbjct: 119 QRQYDTFDIEDAKALSYDSPEDSYIFCASTLHERTIVGHLLNTESFRRNYLRS-----RL 173 Query: 166 MRG---RNRLLTEGYFDSSWCSSI 186 ++ + + G + + S + Sbjct: 174 VKQDDTKINFVPSGNINPATLSEL 197 >gi|119946202|ref|YP_943882.1| hypothetical protein Ping_2562 [Psychromonas ingrahamii 37] gi|119864806|gb|ABM04283.1| conserved hypothetical protein [Psychromonas ingrahamii 37] Length = 541 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 + I+ +NI ++ Y + F+ I VGDNG GK+ ILEA + + G Sbjct: 1 MYIERVNIYNYKCYYGKFSIEFNKGVNILVGDNGSGKSTILEAANLVLSG 50 >gi|229086748|ref|ZP_04218914.1| DNA repair protein recN [Bacillus cereus Rock3-44] gi|228696569|gb|EEL49388.1| DNA repair protein recN [Bacillus cereus Rock3-44] Length = 583 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 53/278 (19%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110 G+ A+ E ++ + + + RD ++N ++ Sbjct: 61 YGTEKAEIEGLFYIEDDKHPCIAKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 120 Query: 111 -------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + + +++ L+ +F F + ++ ++E Sbjct: 121 SLLKEIGKTLVDIHGQHETQDLMNEERHLFMLD-----HFDGDRISNQLEIYQGVYGEYE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 +L + L + E QMA R+++I I + K + Sbjct: 176 QLKKQ----LKSLTEN-------EQQMA--------HRLDLIQFQHEEICKADLKAD-EE 215 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 +L+ F++ + AL + Y DG +D + Sbjct: 216 NELTEEKLKISNFEKIYKALGDAYRSLSEDGSGLDHVR 253 >gi|168210651|ref|ZP_02636276.1| chromosome segregation protein SMC [Clostridium perfringens B str. ATCC 3626] gi|170711287|gb|EDT23469.1| chromosome segregation protein SMC [Clostridium perfringens B str. ATCC 3626] Length = 1185 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A L F T VG NG GK+N+ +++ L + R A Sbjct: 1 MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ + ++ G + +K+ + RS IN+ R Sbjct: 61 MEDVIFTGTEYRKPIGYAQVSLTLDNSLGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + +D I SG +RR L+ Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162 >gi|161528753|ref|YP_001582579.1| SMC domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160340054|gb|ABX13141.1| SMC domain protein [Nitrosopumilus maritimus SCM1] Length = 693 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + + +F ++ +L FD T+FVG NG GK++I++AI+F G+ R S + + Sbjct: 2 ITSIELGDFLAHSDTKLEFDNGVTVFVGHNGAGKSSIIDAITFALFGQ-HTRKSNKGLIK 60 Query: 67 IGSPSFFS 74 G+ +S Sbjct: 61 RGANQGYS 68 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 10/78 (12%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG----- 342 S GE+ V + + L A L+ + +++LDE + HLD +++ +L +++ + Sbjct: 596 SGGEKVSVALSLRLGMANLLGGSN--LNLMILDEPTTHLDAERKKSLVSVLSQLSNISNS 653 Query: 343 ---SQIFMTGTDKSVFDS 357 Q + D +F+ Sbjct: 654 ETPMQFIIITHDAEIFED 671 >gi|94263248|ref|ZP_01287065.1| ATPase [delta proteobacterium MLMS-1] gi|93456466|gb|EAT06586.1| ATPase [delta proteobacterium MLMS-1] Length = 428 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISF 49 M+ + I + + + R Y + F + G+NG GKT +L +I+ Sbjct: 1 MSIMMHITKITLKDVRCYEDAEIDFGTSGTPIVICGNNGSGKTTLLRSIAL 51 >gi|196232677|ref|ZP_03131528.1| chromosome segregation protein SMC [Chthoniobacter flavus Ellin428] gi|196223137|gb|EDY17656.1| chromosome segregation protein SMC [Chthoniobacter flavus Ellin428] Length = 1280 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + ++ L + F+++A +L F T VG NG GK+N+L+A+ ++ + R Sbjct: 1 MYLQSLELFGFKSFAPKTKLEFHRGVTAVVGPNGCGKSNVLDAMRWVLGEQSAKALRGGE 60 Query: 61 YADVTRIGSPSFFST--------FARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIR 111 ADV G+ S + FA E GL + L R R +N R Sbjct: 61 MADVIFSGTDSRAAVGMAEVSMTFAECEEQLGLDWHEVTLTRRVFRDGGSEYFLNKTPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + + +D I S +RR + Sbjct: 121 LKDIHQLFMDTGIGRSAYSIMEQGKIDMILSSRPEDRRAIFE 162 >gi|194882959|ref|XP_001975577.1| GG22392 [Drosophila erecta] gi|190658764|gb|EDV55977.1| GG22392 [Drosophila erecta] Length = 1179 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 18/124 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + +K L + F++Y + FD + T G NG GK+NIL++I F +S + R + Sbjct: 1 MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + +G E +IS+ + + L IN Sbjct: 61 ALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVARQVVVGGKNKFL-ING 119 Query: 108 VVIR 111 +++ Sbjct: 120 KLVQ 123 Score = 36.4 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 8/98 (8%) Query: 263 RTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321 T ++ V + K ++ S G++ +V + + LA + AP+ +LDE Sbjct: 1058 HTNGCLTGLEIKVGFNGKWKESLGELSGGQKSLVALSLVLAMLKF-----SPAPLYILDE 1112 Query: 322 ISAHLDEDKRNALFRIVTD--IGSQIFMTGTDKSVFDS 357 + A LD + ++ SQ + +F+ Sbjct: 1113 VDAALDMSHTQNIGSMLKQHFTNSQFLIVSLKDGLFNH 1150 >gi|187250824|ref|YP_001875306.1| chromosome segregation ATPase [Elusimicrobium minutum Pei191] gi|186970984|gb|ACC97969.1| Chromosome segregation ATPase [Elusimicrobium minutum Pei191] Length = 1148 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 94/274 (34%), Gaps = 45/274 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + I F+++A RL F+ T VG NG GK+N+++++ + + R AS Sbjct: 1 MYLKAIEIIGFKSFADRQRLDFEKGITCVVGPNGCGKSNVVDSVRWAIGEMSWKSLRSAS 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ + + + I + + RS +N V R Sbjct: 61 MIDIIFNGTARRSPLNLAQVNMIFDNESRKLPLDFNEITVSRKIFRSGESEYFLNKVQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + ++ + S + +RR + + + ++ Sbjct: 121 LRDIRDLFLDTGIGGEGYAIIDQGGVESVLSASAEQRREMFEEVAG---------VSKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 R L D + S ++ Q+ +L + AR+ +Y ++ Sbjct: 172 AKREEAIRRLDRVDLDIARLSDTVVLLDEQIKKLDTEAKKARL---------YQKYREEL 222 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 I +SL + FD + E + Sbjct: 223 KESEIAISLESIKE--FDANIVKDSAELEPLIKQ 254 >gi|110800938|ref|YP_696403.1| chromosome segregation protein SMC [Clostridium perfringens ATCC 13124] gi|110675585|gb|ABG84572.1| chromosome segregation protein SMC [Clostridium perfringens ATCC 13124] Length = 1185 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A L F T VG NG GK+N+ +++ L + R A Sbjct: 1 MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ + ++ G + +K+ + RS IN+ R Sbjct: 61 MEDVIFTGTEYRKPIGYAQVSLTLDNSLGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + +D I SG +RR L+ Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162 >gi|206976162|ref|ZP_03237071.1| ATPase involved in DNA repair, putative [Bacillus cereus H3081.97] gi|206745616|gb|EDZ57014.1| ATPase involved in DNA repair, putative [Bacillus cereus H3081.97] Length = 898 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 +KI+ L I F+NY + + + G NG GK++ +AI + G+ Sbjct: 1 MKIERLIIKNFKNYMGEVEFDLSKEVILLYGANGFGKSSFFDAIEWCLTGK 51 >gi|297545260|ref|YP_003677562.1| SMC domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843035|gb|ADH61551.1| SMC domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 88 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 23/45 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + + + I FR+ + + F I VG N GK+NI++AI Sbjct: 1 MYLHRVIIKNFRSIEYIDITFAKGKNIIVGKNNCGKSNIIKAIDL 45 >gi|162449092|ref|YP_001611459.1| chromosome partition protein fragment [Sorangium cellulosum 'So ce 56'] gi|161159674|emb|CAN90979.1| chromosome partition protein fragment [Sorangium cellulosum 'So ce 56'] Length = 456 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 95/350 (27%), Gaps = 71/350 (20%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---------R 57 I I F++ + + T+FVG NG GK+N+LEAI L R Sbjct: 2 ITRFEIDGFKSLRDFMVDLEP-LTVFVGPNGAGKSNLLEAIGLLGRLASMPLEEAFKLGR 60 Query: 58 RASYADVTRIGSPSFFSTFARVEGMEG---------------LADISIKLETRDDRSV-- 100 +R G + + VE + +E R S Sbjct: 61 GRVIDQFSRSGGEAGKTIRLAVEVSLRSTPAPFQDGEPPLPVRYRYELVIERRARPSGVE 120 Query: 101 ---------RCLQINDVVIRVVDELN-----KHLRISWLVPSMDR---IFSGLSMERRRF 143 R L D R L R + P + + Sbjct: 121 ELVVSGECLRALADKDGPPRREIILRHEDEDGRERRVLIAPEYESWAGLNYRCPRTHAAL 180 Query: 144 L----DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE---AQMAELG-V 195 + I+ + + + + W + I +++ + Sbjct: 181 AALKTGSGTYHINLDFPKELTAERAALFEEYADFRNTNSERGWRAVINIITDELSRFSLL 240 Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255 +++ AR+ + + I N P I L G+ +L A Sbjct: 241 QLDPARLRDSSERTDSIALAPDASNLPTILADLPAPTLGEIRADLVSLIPGLA------- 293 Query: 256 KMDSMSRRTLIGPHRSDLIVDY---CDKAITIAHGSTGEQKVVLV--GIF 300 ++ P DL +++ + + S G + + + + Sbjct: 294 ------GFNVV-PDDDDLRIEFKLSGGERLPARLASDGTLRGLALLTALR 336 >gi|158335947|ref|YP_001517121.1| chromosome segregation protein SMC [Acaryochloris marina MBIC11017] gi|158306188|gb|ABW27805.1| chromosome segregation protein SMC [Acaryochloris marina MBIC11017] Length = 1220 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + +K L +S F+++ S + T+ G NG GK+N+L+A+ F L+ RG R Sbjct: 1 MYVKQLELSHFKSFGSTTAIPLLPGFTVVSGPNGSGKSNLLDALLFALGLAGSRGMRAER 60 Query: 61 YADVTRI 67 D+ Sbjct: 61 LPDLVNH 67 >gi|70726681|ref|YP_253595.1| chromosome segregation SMC protein [Staphylococcus haemolyticus JCSC1435] gi|68447405|dbj|BAE04989.1| chromosome segregation SMC protein [Staphylococcus haemolyticus JCSC1435] Length = 1189 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 97/299 (32%), Gaps = 32/299 (10%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K ++ F+++A + FD T VG NG GK+NI +AI L + R + Sbjct: 2 VYLKSIDAIGFKSFADHTDVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 D+ G+ + A++ +KL D R LQ++ I V L + Sbjct: 62 MEDIIFSGAEH--------RNAQNYAEVQLKL----DNKARKLQVDSDDIVVTRRLYRSG 109 Query: 121 RISWLVPSM-------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 + + + +F + + F +D + ID +++ +L Sbjct: 110 ESEYYLNNDKARLRDITELFLDSGLGKEAFSIISQGRVDEILNAKPIDRRQILEESAGVL 169 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 + ++ +++ L + + + L L+ + Sbjct: 170 KYKKRKAESLQKLD-----HTEDNLTRVEDILYDLEGRVEPLKAEASIAKEYLKLSEEMK 224 Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292 ++Y++ D R++D L S +Q Sbjct: 225 QSDVIVTVNDIDQYSE---DNRQLDQKL-NDLKSQQADKEAKQAQINKYIQKQKSQRQQ 279 >gi|46128649|ref|XP_388878.1| hypothetical protein FG08702.1 [Gibberella zeae PH-1] Length = 1087 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 93/281 (33%), Gaps = 25/281 (8%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61 I + + F Y + + VG NG GK++++ AI L G R S Sbjct: 70 AIVRVTVENFVTYEKAEFLPGPHLNMVVGPNGTGKSSLVCAIC-LGLGYSPKHLGRAGSV 128 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119 + + G + + + +K++ R +++ + +N + + L Sbjct: 129 KEFVKHGKDIATIEIELQKRPKDPQNWIVKVQIRREQNNQKWWLNGNESSHKRIHALMHK 188 Query: 120 LRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM-RGRNRLL 173 L+I +P R+ + L + A P + + + + L Sbjct: 189 LKIQVDNLCQFLPQD-RVVEFAACTPVDLLRETLRAAAPEEMLAWQRQLQELDKDKKELE 247 Query: 174 TEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSS------LIMEYVQKENFPHIK 225 + D ++E Q + V R E++ + + + NF K Sbjct: 248 QSTHGDVETLRNLENRQQGLQADVDRLREREEIVEQIKNLRSALVFAKYTEARTNFKDAK 307 Query: 226 LS---LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 L + +L+ K+L+ R +++S R Sbjct: 308 ERKKMAERSLRRLEHDAGPSLEAVNTKQLYAQRIDEAISGR 348 >gi|294827836|ref|NP_711490.2| chromosome segregation protein [Leptospira interrogans serovar Lai str. 56601] gi|293385681|gb|AAN48508.2| chromosome segregation protein [Leptospira interrogans serovar Lai str. 56601] Length = 924 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K LNI F+ +A ++ D T VG NG GK+NI++A+ ++ +G R Sbjct: 1 MYLKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGDK 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS + + +A V + + IK++ + R L ++ Sbjct: 61 MDDVIFHGSEARKPAGYAEVSVIFDNSSKLIKMDYPTVKMTRRLYMDG 108 >gi|229541119|ref|ZP_04430179.1| chromosome segregation protein SMC [Bacillus coagulans 36D1] gi|229325539|gb|EEN91214.1| chromosome segregation protein SMC [Bacillus coagulans 36D1] Length = 1190 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++A + F T VG NG GK+N+++A+ ++ + R Sbjct: 1 MFLKRLDVIGFKSFADRISFEFVPGVTAVVGPNGSGKSNVIDAVRWVLGEQSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV GS +F +E I + + R R IN R Sbjct: 61 MEDVIFAGSDTRKPLNFAEVTLTLENEGRALPIDYQEVSVTRRVYRSGESEFYINKQQCR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 Score = 36.0 bits (82), Expect = 9.9, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 14/159 (8%) Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252 + R + + + ++E K+ + + G + +FD++F A++ E+ ++LF Sbjct: 996 ERVSERYQFLKEQETDLLE--AKDTLDQVITEMDGEMIRRFDETFNAIRNEFEPVFRELF 1053 Query: 253 DGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310 G + D + L+ K + S GE+ + + + A R+ Sbjct: 1054 GGGRADLRLTDPKDLLTTGVEIFAQPPGKKLQNLGLLSGGERALTAIALLFAILRV---- 1109 Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFM 347 P +LDE+ A LDE + + +Q + Sbjct: 1110 -RPVPFCILDEVEAALDEANVYRFSKYLKQFSAETQFIV 1147 >gi|74095929|ref|NP_001027796.1| SMC2 protein [Takifugu rubripes] gi|27805179|emb|CAD58848.2| SMC2 protein [Takifugu rubripes] Length = 1200 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 27/236 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGR--GF-RRA 59 + IK + + F++YA + FD G NG GK+NIL++I FL R + Sbjct: 1 MHIKSIILEGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSHVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQGGITKATVSITFDNSNKGESPLGFETHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + V + + + + L+ ++ I+ RM + + Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQ 217 ++ + E ++ ++ K+ R + L I + Sbjct: 178 KISAQKTIEKKEAKLKEIQT-ILDEEITPTMQKLQEERSSYLEYQKLMREIQHLTR 232 >gi|83772645|dbj|BAE62773.1| unnamed protein product [Aspergillus oryzae] Length = 1185 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 14/217 (6%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62 I + +++F Y S + + +G NG GK+ ++ AI L G R Sbjct: 106 AIVRIKVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPAHLGRAKDPG 165 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------ 116 + + G G + + + D + IN L Sbjct: 166 EFVKHGCREATIEIELAGGPHFRRNPVVTRTIKRDGNKSSFTINGKTASRTQVLKLAQSF 225 Query: 117 -NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT- 174 + + +P ++ ++ L+ A D + +R R + L Sbjct: 226 SIQIDNLCQFLPQD-KVSEFAALTPIELLNSTQRAAAGAEMIEWHDNLKQLRARQKKLQA 284 Query: 175 EGYFDSSWCSSIEA--QMAELGVKINIARVEMINALS 209 + D +++E +M V+ R E+ + Sbjct: 285 DNKSDKDLLTNLEERQEMQRADVERMRQRAEIKRKIE 321 >gi|323508294|emb|CBQ68165.1| related to DNA repair protein rad18 [Sporisorium reilianum] Length = 1177 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 ++ + + F +A+ + F ++ +G NG GK+ IL A+ G+ R +S D Sbjct: 137 VEKIELRNFMCHANFSIDFGSKLNFVMGRNGSGKSTILTALMIALGGKTSSTNRGSSLKD 196 Query: 64 VTRIGSPSF-FSTFARVEGME 83 + + G S + R +G + Sbjct: 197 LVKKGEHSATITVTVRNQGSD 217 >gi|313890274|ref|ZP_07823908.1| chromosome segregation protein SMC [Streptococcus pseudoporcinus SPIN 20026] gi|313121379|gb|EFR44484.1| chromosome segregation protein SMC [Streptococcus pseudoporcinus SPIN 20026] Length = 1181 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ F+ T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKKIEMQGFKSFADKTKIEFEKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 D+ G+ S + FA V + +D IK ++ R R + I+ +R Sbjct: 61 MPDIIFAGTESRNALNFAEVAIVLDNSDEFIKDAGKEIRVERHIYRNGDSDYLIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ ERR + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRTIFE 162 >gi|308158766|gb|EFO61331.1| SMC4-like protein [Giardia lamblia P15] Length = 1465 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Query: 7 IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYA 62 + L + F++YA + F + + +G NG GK+N+++++ F+ R R + A Sbjct: 36 LTKLRLVNFKSYAGEHVLGPFKSSFSCILGANGSGKSNVIDSLLFVFGWRARALRHSRLA 95 Query: 63 DVTRIGSPSFFSTFARVEGMEGLAD 87 D+ S ARV+ L D Sbjct: 96 DLIHTSSEHPELDHARVDVHFTLWD 120 >gi|257083237|ref|ZP_05577598.1| chromosome partition protein SMC [Enterococcus faecalis Fly1] gi|256991267|gb|EEU78569.1| chromosome partition protein SMC [Enterococcus faecalis Fly1] Length = 1192 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 98/275 (35%), Gaps = 30/275 (10%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + L+ +E Q+ L + + A + + AL + E Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQADAA-KKYL-ALKEELTEIDVNLTVTE 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 I+ + K Q A++E+ A R ++ Sbjct: 234 IQ-EAKAIWETKT-QELTAIEEKLAGASKQVRDLE 266 Score = 40.3 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|251780518|ref|ZP_04823438.1| chromosome segregation protein SMC [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084833|gb|EES50723.1| chromosome segregation protein SMC [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1185 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L+I F+++A L F+ T VG NG GK+NI +A+ ++ + R Sbjct: 1 MFLKSLDIRGFKSFADKTELKFNNGVTAVVGPNGSGKSNISDAVRWVLGEQSVKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ +E + T R R IN+ R Sbjct: 61 MEDVIFAGTQYRKPVGLAQVSLTLENSDKKLSTEYSEVTVSRRIFRSGESEYLINNKKCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + ++ I SG ERR L+ Sbjct: 121 LKDVINLFMDTGIGKEGYSLIGQGKIESILSGRPEERRALLE 162 >gi|269837877|ref|YP_003320105.1| SMC domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787140|gb|ACZ39283.1| SMC domain protein [Sphaerobacter thermophilus DSM 20745] Length = 850 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 97/277 (35%), Gaps = 46/277 (16%) Query: 8 KFLNISEFRNYAS-LRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 L I F +Y + + F + GDNG GK+ +L+AI++ G+ R S D+ Sbjct: 4 TRLAIRNFMSYREPVEIDFRGIRVACLSGDNGAGKSALLDAITWALWGKA-RVNSDRDLI 62 Query: 66 RIGSPSFFSTFARVEGMEG-----------LADISIKLETRDDRSVRCLQIN--DVVIRV 112 IG+P TF + G + + +++LE + R L + Sbjct: 63 SIGAPDMEVTFGFILGEQEFRVTRRRRARATSSATLELEAIEGDRCRSLTGASLRETQQT 122 Query: 113 VDELNKHLRISWLVPSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 +D L + +++ + D + +R++ L ++ +E Sbjct: 123 IDRLLRMDYETFINSAFILQGRADEFTTKTPQQRKQVLAEILN------LSEYDRYEEAA 176 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 R R I+ +AEL L+ L + E+ L Sbjct: 177 RQAFRERDRR------LREIDLHLAELD-----------QRLADLPRHREEVESLGQELL 219 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 LT D + A++E F + +S+ RR Sbjct: 220 KLTDRAD-DLRRRLDAVQERVRSLEFTASQRESVRRR 255 >gi|188590228|ref|YP_001920587.1| chromosome segregation protein SMC [Clostridium botulinum E3 str. Alaska E43] gi|188500509|gb|ACD53645.1| chromosome segregation protein SMC [Clostridium botulinum E3 str. Alaska E43] Length = 1185 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L+I F+++A L F+ T VG NG GK+NI +A+ ++ + R Sbjct: 1 MFLKSLDIRGFKSFADKTELKFNNGVTAVVGPNGSGKSNISDAVRWVLGEQSVKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ +E + T R R IN+ R Sbjct: 61 MEDVIFAGTQYRKPVGLAQVSLTLENSDKKLSTEYSEVTVSRRIFRSGESEYLINNKKCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + ++ I SG ERR L+ Sbjct: 121 LKDVINLFMDTGIGKEGYSLIGQGKIESILSGRPEERRALLE 162 >gi|45658257|ref|YP_002343.1| chromosome segregation protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601499|gb|AAS70980.1| chromosome segregation protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 924 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K LNI F+ +A ++ D T VG NG GK+NI++A+ ++ +G R Sbjct: 1 MYLKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGDK 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 DV GS + + +A V + + IK++ + R L ++ Sbjct: 61 MDDVIFHGSEARKPAGYAEVSVIFDNSSKLIKMDYPTVKMTRRLYMDG 108 >gi|290968541|ref|ZP_06560080.1| hypothetical protein HMPREF0889_1676 [Megasphaera genomosp. type_1 str. 28L] gi|290781537|gb|EFD94126.1| hypothetical protein HMPREF0889_1676 [Megasphaera genomosp. type_1 str. 28L] Length = 558 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 + IK ++I +RN + L F VG+N +GK++ L +S + G Sbjct: 1 MYIKSMHIENYRNLRDVTLHFHESMNYLVGENAIGKSSFLRLLSLICKG 49 >gi|229047954|ref|ZP_04193530.1| hypothetical protein bcere0027_39290 [Bacillus cereus AH676] gi|228723411|gb|EEL74780.1| hypothetical protein bcere0027_39290 [Bacillus cereus AH676] Length = 681 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 8/97 (8%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I + I FRNY + + + I +G+N VGKTN L AI + +D R Sbjct: 20 ISKIKIKNFRNYKDVDVTLSHK-QIIIGENNVGKTNFLRAIQLILD------PKLSDEDR 72 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 S F + M I I +E + + + Sbjct: 73 YLQESDFFDGLE-DPMNQKEKIEISIEIKGYEHNKTI 108 >gi|28210932|ref|NP_781876.1| chromosome segregation protein smc2 [Clostridium tetani E88] gi|28203371|gb|AAO35813.1| chromosome segregation protein smc2 [Clostridium tetani E88] Length = 1186 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L I F+++A+ + F T VG NG GK+NI +AI ++ + R Sbjct: 1 MFLKSLEIRGFKSFANKTEINFQKGITAIVGPNGSGKSNISDAIRWVLGEQSIKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISI------KLETRDDRSVRCLQINDVV 109 DV G+ ++ + + ++ R S + N Sbjct: 61 MEDVIFAGTQFRKPVGLAKVSLTLDNSKSELPLDYSEIMVSRIIYRSGESEYLINNNKCR 120 Query: 110 IRVVDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLD 145 ++ + EL K +D I SG ERR L+ Sbjct: 121 LKDIQELFMDTGIGKEGYSIIGQGKIDAILSGKPEERRSLLE 162 >gi|330928862|ref|XP_003302431.1| hypothetical protein PTT_14235 [Pyrenophora teres f. teres 0-1] gi|311322250|gb|EFQ89491.1| hypothetical protein PTT_14235 [Pyrenophora teres f. teres 0-1] Length = 1132 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 80/274 (29%), Gaps = 20/274 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 + + ++ F Y + + +G NG GK+ ++ AI L G R + Sbjct: 71 LVRVKLTNFVTYTAAEFHLGPSLNMVIGPNGTGKSTLVCAICLGLGWGSEHLGRAKQVGE 130 Query: 64 VTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLR 121 + G+ G E I I+ ++D R + V EL K Sbjct: 131 YVKHGATMATIEIELAAGPGEDGNHIIIRTIRKEDNQSRWFLNGARSTQKEVIELAKTYS 190 Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR--GRNRLLT 174 I +P + + R + A P + D + +R RN Sbjct: 191 IQIDNLCQFLPQDRVVEFARMTDIERLRETQ-RAAAPPYMVEWHDELKALRKDERNLETK 249 Query: 175 EGYFDSSWCSSIEAQMAELG-VKINIARVEM------INALSSLIMEYVQKENFPHIKLS 227 + + Q A G V R E+ + +I + ++ +K + Sbjct: 250 RQNEGKHLEALRKVQTAAQGDVDRIRERQEIQTKSNCLRKAKPVIELRLCRKEIEQLKET 309 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 L + A+ + D Sbjct: 310 LRVARLELDEIKVDVEPARQAQAEMQSYQSDIEK 343 >gi|156102837|ref|XP_001617111.1| structural maintenance of chromosome 2 [Plasmodium vivax SaI-1] gi|148805985|gb|EDL47384.1| structural maintenance of chromosome 2, putative [Plasmodium vivax] Length = 1218 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 19/145 (13%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 + I+ + + F++Y + + F Q G NG GK+N+L+AI F+ R Sbjct: 1 MHIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60 Query: 60 SYADVT-RIGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQIN 106 ++ + G + E + +I+I + R L + Sbjct: 61 RLDELIYKQGQAGITKGSVTIKFNNEQKPSPLQEPYRDMKNITITRQIVLGGRNRYLLNS 120 Query: 107 D-VVIRVVDELNKHLRISWLVPSMD 130 + + + + L+++ P Sbjct: 121 HNAKPKDISDFFQSLKLNINNPHFL 145 >gi|56460803|ref|YP_156084.1| chromosome segregation ATPase, sms [Idiomarina loihiensis L2TR] gi|56179813|gb|AAV82535.1| Chromosome segregation ATPase, sms [Idiomarina loihiensis L2TR] Length = 1152 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 100/294 (34%), Gaps = 43/294 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + + F+++ ++ F Q T VG NG GK+N+++A+ ++ S + R + Sbjct: 1 MRLKHIKLVGFKSFVDPTKVPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107 +DV GS + F ++ R++G +IS+K D +N Sbjct: 61 MSDVIFNGSSARKPVSQASVELVFDNSSGRIQGEYAAFNEISVKRLVTRDGQSNYF-LNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P R+F + ERR+ Sbjct: 120 SRCRRRDITDLFLGTGLGPRSYAIIEQGMISRLIESRPQELRVFIEEAAGISKYKERRKE 179 Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 + + + R+ D + + L + ++A + ++ R Sbjct: 180 TENRMLH-TRENLERLSDVREELGQQLEKLERQAAAAIRYKELKASERKFKGELQALRWL 238 Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 ++ + ++ + D + EE ++ ++ Sbjct: 239 KLDNQRQQLQTQYAEQQTELERWQAQQSGDERGAIELKEQAEEARDRVELSQEQ 292 >gi|83273857|ref|XP_729582.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23487793|gb|EAA21147.1| protein mix-1, putative [Plasmodium yoelii yoelii] Length = 1227 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 + I+ + + F++Y + + F Q G NG GK+N+L+AI F+ R Sbjct: 1 MHIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60 Query: 60 SYADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104 ++ + G ++ ++ RD +++ + Sbjct: 61 RLDELIYKQGQAGITKGSVTIKFNNEEKPSPLQEPYRDMKTITITR 106 >gi|326469275|gb|EGD93284.1| hypothetical protein TESG_00831 [Trichophyton tonsurans CBS 112818] Length = 1194 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 3/109 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 I + ++ F Y S + + +G NG GK+ + AI L G + R A+ Sbjct: 120 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPSYLGRAKDVAE 179 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 + G+ + + I + + + IN +R Sbjct: 180 FVKHGADEAIIEIELKARADMDQNPIICRTIKREGNKSTFSINGTPVRQ 228 >gi|327309254|ref|XP_003239318.1| hypothetical protein TERG_01300 [Trichophyton rubrum CBS 118892] gi|326459574|gb|EGD85027.1| hypothetical protein TERG_01300 [Trichophyton rubrum CBS 118892] Length = 1194 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 35/313 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 I + ++ F Y S + + +G NG GK+ + AI L G + R A+ Sbjct: 120 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPSYLGRAKDVAE 179 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------- 116 + G+ + + I + + + IN +R L Sbjct: 180 FVKHGADEATIEIELKARADMDQNPIICRTIKREGNKSTFSINGKPVRQNVVLSLAKSFS 239 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG----RNRL 172 + + +P S + +D + M+ + ++ + + Sbjct: 240 IQIDNLCQFLPQDK--VSEFAALSP--IDLLHSTQRAAAGPEMVKWHEGLKELRLGQKDI 295 Query: 173 LTEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L E +++E QM V+ R E+ L +E P Sbjct: 296 LEESKGQREHLANLEKRQQMQREDVERMKQREEIKKRLK--FLEM--SRPLPRF------ 345 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GST 289 + + E+ + L + ++++ L + + + S Sbjct: 346 ---NSCKKETSEVLEQKQRLLREQQELERKLEPALRAVNSKRAYYSKIEAVLKQKRVLSQ 402 Query: 290 -GEQKVVLVGIFL 301 GE+ + L Sbjct: 403 KGEEAATAISEKL 415 >gi|323340722|ref|ZP_08080974.1| cell division protein Smc [Lactobacillus ruminis ATCC 25644] gi|323091845|gb|EFZ34465.1| cell division protein Smc [Lactobacillus ruminis ATCC 25644] Length = 1180 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 27/165 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 ++IK L +S F+++A + F T VG NG GK+NI+E + ++ + R Sbjct: 1 MRIKSLTLSGFKSFADKTTIEFQDGLTGVVGPNGSGKSNIIEGLRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 DV GS + F +T ++ + I+ K+ D IN Sbjct: 61 MPDVIFAGSQTRAPLNRCMVQAVFDNTDHYLKNQQDDVTITRKIYRNGDSE---YLINGK 117 Query: 109 VIRVVD--ELNKHLRI------SWLVPSMDRIFSGLSMERRRFLD 145 R+ D +L + S++ IF+ +RR ++ Sbjct: 118 QARLRDIVDLFTDTGVGRESFSIISQGSVEEIFNSKPQDRRMLIE 162 >gi|312375227|gb|EFR22641.1| hypothetical protein AND_14406 [Anopheles darlingi] Length = 854 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 9/119 (7%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62 K+ + + F + L + F+ + VG NG GK+ I+ A++ R +S Sbjct: 22 KVLRMELKNFMCHRHLVIEFNKSVNLLVGKNGSGKSAIVAALTVGLGCNAMQTNRGSSLK 81 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDELNKH 119 D+ + G P G D E +R V R + N + + N H Sbjct: 82 DLIKHGEPQAVIEIHLENGNFNGFDQ----ERYGNRIVCQRTIYANGKGSYKLTDANGH 136 >gi|242048726|ref|XP_002462109.1| hypothetical protein SORBIDRAFT_02g019360 [Sorghum bicolor] gi|241925486|gb|EER98630.1| hypothetical protein SORBIDRAFT_02g019360 [Sorghum bicolor] Length = 1039 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 84/265 (31%), Gaps = 28/265 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63 I + + F ++SL + D G NG GK+ IL A+ R R AS D Sbjct: 6 ISRIRLENFMCHSSLHIELDQHVNFITGQNGSGKSAILTALCVAFGCRAKNTQRAASLKD 65 Query: 64 VTRIGSP-SFFSTFARVEGME----GLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 + G + + G + + +I LE R S + D R V Sbjct: 66 FIKNGCSYAAITVDINNHGEDAFKPEVYGDTIILERRITESAGSTVLKDQHGRKVAHRKD 125 Query: 119 HLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172 L I + R FL + + + + L++ N L Sbjct: 126 DLNEII---EHFNIEVENPCVIMSQDKSREFLHSG----NDKDKFKFFFKATLLQQVNDL 178 Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232 L + + SI ++ I A E ++ + I E H +L L Sbjct: 179 LATIRDNLNIADSIVEELE---ASIRPALRE-LDEIQEKIKNMEHIEEIAHEIENLKKKL 234 Query: 233 DGKFDQSFCAL---KEEYAKKLFDG 254 + +EE +KL + Sbjct: 235 AWAWVYDVDKEIGGQEENLEKLKER 259 >gi|218780066|ref|YP_002431384.1| SMC domain-containing protein [Desulfatibacillum alkenivorans AK-01] gi|218761450|gb|ACL03916.1| SMC domain-containing protein [Desulfatibacillum alkenivorans AK-01] Length = 397 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 53/388 (13%), Positives = 116/388 (29%), Gaps = 58/388 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + I + S F++ ++ F IFVG NG GK+N+LEAI LS R Sbjct: 1 MIISRMKFSSFKSME--KVDFQPGVVNIFVGANGSGKSNLLEAIGVLSAAASGRV-DDES 57 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + R G + + I+ ++ + + + + + + E Sbjct: 58 LKRRGVRPGLPSLYKCAFPGIKESSPIEFSAWNEHASYEVSLLNPIKEPLPEWRYDKENL 117 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 W D+I R+ + + E L + Sbjct: 118 W---EDDKIVIDRRQGDRKKYNPEAG------LAALSMVE---------LDAQSPSAKLL 159 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCA 242 ++ I + +S + + + ++L L ++ Sbjct: 160 KALRD------FAIYSPDTNTLRGISPDLQQRPPIGLAGGQLPIALDDLLIPGKPENDSF 213 Query: 243 LKEEYAKKL-----FDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAH-------GST 289 +++ + L + D+ + + G ++ + D+ + S Sbjct: 214 IEKVRGEALALIDWAESYSTDAFKKIPVSPGFSLMQKVIQFEDRFMKRGRNILSGYDASE 273 Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV------TDIGS 343 G +F+ ++ + +D L+ AL V + Sbjct: 274 G-------ALFVLFHAALAAHPKSPTVCAVDNADHALNPRLAKALLTKVCGWYLDSPRPR 326 Query: 344 QIFMTGTDKSVFDSL---NETAKFMRIS 368 QIF+T + D + N+ + +S Sbjct: 327 QIFLTTHNPQALDGIPLQNDKVRLFTVS 354 >gi|12851088|dbj|BAB28937.1| unnamed protein product [Mus musculus] gi|26353126|dbj|BAC40193.1| unnamed protein product [Mus musculus] Length = 199 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63 +K + I F++Y + + T +G NG GK+N+++AISF+ + R + D Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63 Query: 64 VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111 + G+P +F S EG E + + E + + V L + Sbjct: 64 LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + L K +++ I ER + Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156 >gi|124505413|ref|XP_001351448.1| chromosome associated protein, putative [Plasmodium falciparum 3D7] gi|75015107|sp|Q8I1U7|SMC3_PLAF7 RecName: Full=Structural maintenance of chromosomes protein 3 homolog gi|23498206|emb|CAD49177.1| chromosome associated protein, putative [Plasmodium falciparum 3D7] Length = 1193 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 + IK + + FR Y + F VG NG GK+NIL AI F+ Sbjct: 1 MYIKQIRLKGFRTYKNETTIDFTRGINCIVGFNGSGKSNILLAIEFI 47 Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 16/156 (10%) Query: 207 ALSSLIMEYVQKENFPH-IKLSLTGFLDGKFDQSFCALKEEYAKK--LFDGRKMDSMSRR 263 ++ EY L L + ++ + + E+ K+ + + +D ++ Sbjct: 1009 KINKYFSEYFSLLFKNRKASLVLKKMNEKEYKEKLQEMSEKRIKRRIIDEEVYIDKITGI 1068 Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323 ++ D + Y TI S GE+ +V + +FL N DEI Sbjct: 1069 SINITSNDDEKMTY-----TIQELSGGERSIVAICLFLCL-----NKIDNFSFFFFDEID 1118 Query: 324 AHLDEDKR---NALFRIVTDIGSQIFMTGTDKSVFD 356 A LD R + L + + G+Q +T K + + Sbjct: 1119 AALDTIHRDNLSLLLKELAHRGTQFIITTFRKELLE 1154 >gi|49481915|gb|AAT66669.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A68] Length = 573 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 89/278 (32%), Gaps = 47/278 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL + F+ T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIYLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G A +EG+ L D + ++ + ++N Sbjct: 57 YGEEK-----AEIEGLFLLNDETHPCYGKCAEVGIDISEGMVVLRREIFATGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFE 163 ++ V+ E+ L + F + +R +E Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELMDPARYLPLLDEFGGAEIAEALAEYRSVYEKYE 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSSLI 212 +L + +L + + Q+ E+ ++ +V+++N + + Sbjct: 172 QLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYEAL 231 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247 + + L G D LKE Y Sbjct: 232 KHSYEALSGEQRGLDWIGLAMSHLDDVASIDPELKEVY 269 >gi|327480470|gb|AEA83780.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri DSM 4166] Length = 1162 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 50/324 (15%), Positives = 106/324 (32%), Gaps = 44/324 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKSIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108 DV GS + T A +E + +D I + R R S +N V Sbjct: 61 MTDVIFNGSNTRKPVTQASIELIFDNSDGTLTGEYAAFAEISIRRRVTRDSQNTYFLNGV 120 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159 R D + + L P I + R F++ + Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAGI 170 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 ++ R + + + + + + ++ +++ E K Sbjct: 171 SKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQSAEKYQEYKAEERQLKA 230 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH-------RSD 272 ++ G+ +Q + + + + R D+ R G H + Sbjct: 231 QLSALRWQALNEQVGQREQVIGDQEVAFEALVAEQRSADASIERLRDGHHELSERFNQVQ 290 Query: 273 LIVDYCDKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 291 GRFYSVGGDIARVEQSIQHGQQRL 314 >gi|288920292|ref|ZP_06414605.1| OLD family toprim nucleotidyl transferase/hydrolase domain protein [Frankia sp. EUN1f] gi|288348316|gb|EFC82580.1| OLD family toprim nucleotidyl transferase/hydrolase domain protein [Frankia sp. EUN1f] Length = 641 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 47/344 (13%), Positives = 97/344 (28%), Gaps = 43/344 (12%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + + + FR+ + F T+ VG+N GK+NI++A+ +P R Y + Sbjct: 1 MYLAEFTLKNFRSCRDTTVTFQRGLTLIVGENNSGKSNIIDALRLSTPPLSGRPTRYFEA 60 Query: 65 T---RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 GS AR G+ + + RV +L++ R Sbjct: 61 DDDPSFGSRDDVELTARFAGLSHYQEGQYMALVDAEDGCLYYT---SRYRVEADLSQRER 117 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 LV + R R ++ + + D +R + S Sbjct: 118 RVPLV-GRAKAVDSEPELRAR--------VNHVYLAPLRDAQREL---------DSARGS 159 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS-F 240 S I + + R + + + + + + +D Sbjct: 160 RLSHIIKYLIS-----DDDRDDFLAKAKDGFEKLADHPVVTNTRNDIHRHVDNLTTPVRP 214 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300 + + + + G +D+ A + S ++ Sbjct: 215 QRVGLGFELVRLERLTRGLRLKMAEHGLEPADIADSGLGYANLVFMAS-------VI--- 264 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 L + L++E AHL + L + + Q Sbjct: 265 ---LELEHAPDSELTLFLVEEPEAHLHPQLQAVLLDYLREKAEQ 305 >gi|164660398|ref|XP_001731322.1| hypothetical protein MGL_1505 [Malassezia globosa CBS 7966] gi|159105222|gb|EDP44108.1| hypothetical protein MGL_1505 [Malassezia globosa CBS 7966] Length = 957 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 ++I+ L I F++Y V FD G NG GK+NIL+AI F L+ R + Sbjct: 1 MRIEELIIDGFKSYPVRTHVRGFDPSFNAITGLNGSGKSNILDAICFVLGLTNLSSVRAS 60 Query: 60 SYADVT 65 + D+ Sbjct: 61 NMQDLI 66 >gi|110597462|ref|ZP_01385749.1| SMC protein-like [Chlorobium ferrooxidans DSM 13031] gi|110341006|gb|EAT59477.1| SMC protein-like [Chlorobium ferrooxidans DSM 13031] Length = 813 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASYA 62 ++I +++++ +++ L F + + G NG GK+ + EAI + G R ++ Sbjct: 1 MQILSIHLTDIKSHRDTELSFSSGINVLSGANGSGKSTVFEAIGYALFGVDARDFVSNVD 60 Query: 63 DVTRIGSPSF--FSTFARVEGMEGLADISIK 91 IGS TF +G E ++ Sbjct: 61 RFISIGSKRGRISVTFKSDDGREWQVSRTVG 91 >gi|146296631|ref|YP_001180402.1| chromosome segregation protein SMC [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410207|gb|ABP67211.1| condensin subunit Smc [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1177 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 30/278 (10%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + IK+L I F+++ R+ F T VG NG GK+NI +AI + + R + Sbjct: 1 MYIKWLEIYGFKSFCEKTRIEFQKGITAIVGPNGCGKSNITDAIRWALGEQSLKLLRASK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ G+ F + +G I + R R IN R Sbjct: 61 LEDLIFAGTEKRRSQGFAEVSIYFDNSDGKLPIDFEEVVITRRLFRSGESEFFINKTACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + ER + + ++ R + E Sbjct: 121 LKDIYELFLDSGLGKDGYSIISQGRVDEIINARPFERYKIFEEACGITK--YKYRKEEAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R ++ + + +++Q+ E+ ++ A+V + L+ + + +++ Sbjct: 179 RKLKNTHENILRLQ---DVIFELKSQLEEIAPEVEKAKVYI--ELNRKLSDLKREKYLFS 233 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 KL+ + +LKE+ K + +++ Sbjct: 234 YKLANENYKSTIAQ--IESLKEDLEKLTNNKLEIEKRL 269 Score = 36.4 bits (83), Expect = 7.0, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 27/164 (16%) Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK--LFDGR 255 RVE + Q E+ L ++ E + K LF Sbjct: 992 LNERVEFLQR---------QIEDLEKTSKELKNLINELDKNMKNIFLENFEKIKLLFSEI 1042 Query: 256 KMDSMSRRTL---IGPHRSDLIVDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLI 307 + + + + + VD K S GE+ + + + A Sbjct: 1043 FKELFNGGSCDLKLIQDGEEFGVDIDVKPPGKKLQNINLLSGGEKALTAIALLFAFL--- 1099 Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348 + + +LDEI + LDE + + ++ +Q I +T Sbjct: 1100 --MFKGSLLCILDEIDSSLDEANVQRFAQFLKNLNNQSQIIIVT 1141 >gi|254167742|ref|ZP_04874592.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469] gi|197623270|gb|EDY35835.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469] Length = 1178 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 26/169 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 + +K + + F+++ RL F T G NG GK+NI +AI F+ + R Sbjct: 1 MYLKAIELENFKSFGRKTRLEFKEGFTAISGPNGSGKSNITDAILFVLGPKSSKKIRAQR 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-------------IN 106 D+ G + + + RV + D + L+ + + R ++ IN Sbjct: 61 LTDLIYNGGKNGRPADYCRVSLIFDNRDRVLPLDEDEVKLTRYIKRANNELGYNSYFYIN 120 Query: 107 DVVIRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFLDRM 147 D R+ D + + + RI +ERR LD + Sbjct: 121 DEQARLQDFNSILIHAKIEADGYNFVQQGDVTRIVEMTPVERRTILDDI 169 >gi|94984929|ref|YP_604293.1| SMC protein-like protein [Deinococcus geothermalis DSM 11300] gi|94555210|gb|ABF45124.1| SMC protein [Deinococcus geothermalis DSM 11300] Length = 1100 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 6/114 (5%) Query: 7 IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62 ++ + + F+++A RL F + +G NG GK+N++EA+ + + R R Sbjct: 2 LQSITLQGFKSFADRTRLEFGPGVSAVIGPNGSGKSNVVEALRWATHQARARELRAGRGT 61 Query: 63 DVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ-INDVVIRVVD 114 ++ GS A V+ A+ + + R R Q +N R D Sbjct: 62 ELIFHGSGGKAPLGLAEVQVELLTAEGRVNVTRRVYRDGTGEQDLNGRPARARD 115 >gi|326483522|gb|EGE07532.1| SMC5 protein [Trichophyton equinum CBS 127.97] Length = 1194 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 3/109 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 I + ++ F Y S + + +G NG GK+ + AI L G + R A+ Sbjct: 120 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPSYLGRAKDVAE 179 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 + G+ + + I + + + IN +R Sbjct: 180 FVKHGADEAIIEIELKARADMDQNPIICRTIKREGNKSTFSINGTPVRQ 228 >gi|326430299|gb|EGD75869.1| hypothetical protein PTSG_07983 [Salpingoeca sp. ATCC 50818] Length = 1206 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 5/105 (4%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60 + IK + I FR+Y F H + VG NG GK+N AI F+ R Sbjct: 1 MHIKRVTIKGFRSYREQTFVEPFSPHHNVIVGRNGSGKSNFFFAIRFVLSDAFASLRAEE 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105 + G+ A VE + +D I + + R + + Sbjct: 61 RQRLLHEGA-GHAVMSAYVEIVFDNSDERIPTDRDEVTLRRSIGV 104 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 13/205 (6%) Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216 + + + R+ L++ S S+I + L + + A ++S V Sbjct: 976 KALDQYISFSEQRDALVSRKDQQDSGDSAITELIQVLDAQKHEAINLTFKQVASHFKA-V 1034 Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276 KE PH + SL +S + + + T + V+ Sbjct: 1035 FKELVPHGEASLVMQRADPTAESQESGTLSAPDSDVPAHVR--LRQTTTTAYSGVAIRVN 1092 Query: 277 YCDKAITIAHGST---GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 + K G++ +V + + A P L DE+ LD R+A Sbjct: 1093 FTGKGEDTHMLQQLSGGQKSLVALALIFA-----IQRCDPGPFYLFDEVDQALDPAHRSA 1147 Query: 334 LFRIV--TDIGSQIFMTGTDKSVFD 356 + R++ +Q T + + Sbjct: 1148 VARMIYKASRDAQYITTTFRPELLE 1172 >gi|160915313|ref|ZP_02077526.1| hypothetical protein EUBDOL_01322 [Eubacterium dolichum DSM 3991] gi|158433112|gb|EDP11401.1| hypothetical protein EUBDOL_01322 [Eubacterium dolichum DSM 3991] Length = 978 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 88/286 (30%), Gaps = 48/286 (16%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A + FD+ VG NG GK+NI +AI L + R S Sbjct: 1 MFLKRIELQGFKSFADKSIITFDSDVIGIVGPNGCGKSNINDAIRWVLGEQSVKSLRGNS 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 +DV GS F ++ + +++ +L IN Sbjct: 61 MSDVIFNGSAQRKPVNMAEVTLVFDNSRHLLNVDFEEVEVTRRLHRHSGEGE--YFINKT 118 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159 R+ D LN + L I S ERR + + Sbjct: 119 PCRLKDILNLVMDT-GLGRDSLSIISQGNISAFADAKPEERRALFEEAAG---------V 168 Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219 + + S +E +A L I I +N L + Sbjct: 169 AKYRK----------RKSESLSKLHRMEENLARL-EDIIIELERQVNPLKRQAKKAEIYL 217 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 ++ + ++ E KK FD +M T+ Sbjct: 218 EKKQELETIEVSVLVDEIETLNESIEMLRKKAFDFEAQKAMHETTI 263 >gi|126179774|ref|YP_001047739.1| chromosome segregation protein SMC [Methanoculleus marisnigri JR1] gi|125862568|gb|ABN57757.1| condensin subunit Smc [Methanoculleus marisnigri JR1] Length = 1147 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 7/140 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + I L I F+++A ++ F T+ G NG GK+NI++++ F LS RG R Sbjct: 1 MYITQLEIDNFKSFARKTKIPFFEGFTVVSGPNGSGKSNIIDSLLFVLALSGARGLRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 D+ + S A V + R + + ++ + L Sbjct: 61 LTDLINVNSG---KNTAEVTATFSDGTTIRRRIKRTPTGYYSYNYLNNRLCKQGDVIEFL 117 Query: 121 RISWLVPSMDRIFSGLSMER 140 + P + + R Sbjct: 118 AKIGIKPEGYNVVMQGDITR 137 >gi|330891797|gb|EGH24458.1| ATP-dependent endonuclease family protein [Pseudomonas syringae pv. mori str. 301020] Length = 626 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 56/406 (13%), Positives = 106/406 (26%), Gaps = 104/406 (25%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63 + + + + FR A + + HT F+GDN GK+ +LEA+ L P R R Sbjct: 1 MHLVRVRVQNFRGIAYGEVHLN-GHTAFIGDNNAGKSTLLEAVDLVLGPERLSR----RP 55 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRD----------------DRSVRCLQIND 107 V F++ + I I++ D + L + Sbjct: 56 VI--DEHDFYAGTYVDPDKNEVVPIQIEVVVAGLSDEQLRHFRDHIEWWDSQAKTLLVGA 113 Query: 108 VVIRVVDELNKHLRISWLV---------------------PSMDRIFSGLSMER-RRFLD 145 + P + +R FL Sbjct: 114 PPEGTDAPHVGAAIRVFFNGWYDVEEDDFAGDTFYATPEMPDGSYLRFSAPDKRKCGFL- 172 Query: 146 RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 + R + R + L G S I +++ R+ M Sbjct: 173 ---------YLRTLRTGARAL-----SLERG----SLLDVI--------LRLKETRLTMW 206 Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 L + E +L L D E+ ++ D D + R Sbjct: 207 EDLLDQLRALPVGETEDIGEL-LVAVQDAVRHYVPSDWAEQPHMRVSD-LTRDMLRRTLT 264 Query: 266 IGPHRSDLIVDYCDKAITIAHGS----------TGEQKVVLVGI--FLAHARLISNTTGF 313 + + GS TG +++ + +A + Sbjct: 265 V----------FMGTGAKRPDGSVYSAPYQHQGTGTINTLVLALLSIIAELK-------Q 307 Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359 + I ++E L + + + +Q T V + + Sbjct: 308 SVIFAMEEPEIALPPHTQKRIINSLRQKSAQAIFTSHSPYVLEEFD 353 >gi|195486110|ref|XP_002091365.1| GE12281 [Drosophila yakuba] gi|194177466|gb|EDW91077.1| GE12281 [Drosophila yakuba] Length = 1179 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 18/124 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + +K L + F++Y + FD + T G NG GK+NIL++I F +S + R + Sbjct: 1 MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + +G E +IS+ + + L IN Sbjct: 61 ALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVARQVVVGGKNKFL-ING 119 Query: 108 VVIR 111 +++ Sbjct: 120 KLVQ 123 Score = 36.4 bits (83), Expect = 8.1, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 8/98 (8%) Query: 263 RTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321 T ++ V + K ++ S G++ +V + + LA + AP+ +LDE Sbjct: 1058 HTNGCLTGLEIKVGFNGKWKESLGELSGGQKSLVALSLVLAMLKF-----SPAPLYILDE 1112 Query: 322 ISAHLDEDKRNALFRIVTD--IGSQIFMTGTDKSVFDS 357 + A LD + ++ SQ + +F+ Sbjct: 1113 VDAALDMSHTQNIGSMLKQHFTNSQFLIVSLKDGLFNH 1150 >gi|327306567|ref|XP_003237975.1| DNA repair protein Rad18 [Trichophyton rubrum CBS 118892] gi|326460973|gb|EGD86426.1| DNA repair protein Rad18 [Trichophyton rubrum CBS 118892] Length = 1125 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 92/314 (29%), Gaps = 68/314 (21%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ ++ F + + VG NG GK+ IL A++ G+ R S Sbjct: 85 IERVDCYNFMCHEHFSVELGPLINFIVGKNGSGKSAILTALTLCLGGKASATNRGQSLKS 144 Query: 64 VTRIGSPSFFSTFARVEGMEGLADI------SIKLETRDDRSV--------RCLQINDVV 109 + G S + R++ A + SI +E RS + I Sbjct: 145 FVKEGKESA-TIIVRIKNRGDGAYLPDTYGESIIVERHFTRSGSSGFRLKSKSGAIISTR 203 Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR--- 156 +D + + + P + + + E+ +F + +D + Sbjct: 204 RADLDCITDYFALQMDNPMNVLSQDMARQFLSASSPAEKYKFFMKGVQLEQLDHDYHMME 263 Query: 157 -------RRMIDFERLMR----GRN----------------RLLTEGYFDSSWCSSIEAQ 189 ++ D + ++ RN + ++W E + Sbjct: 264 ESIDQLQAKLHDHQEQLKVLESNRNNARARLAQSDRHESLRARIRHLRSQTAWIQVEEQE 323 Query: 190 MAE--LGVKINIARVEMINALS-------SLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 L +I R I L + Q+ N + + D S Sbjct: 324 RIRDSLIAEIAETR-ACIEQLESEAENRDAEFQAADQEVNEAREAVRIAKEAQAAIDDSK 382 Query: 241 CALKEEYAKKLFDG 254 +K+ Y + + + Sbjct: 383 AEIKQRYDEAVKER 396 >gi|163782595|ref|ZP_02177592.1| citrate synthase [Hydrogenivirga sp. 128-5-R1-1] gi|159882168|gb|EDP75675.1| citrate synthase [Hydrogenivirga sp. 128-5-R1-1] Length = 1158 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 108/281 (38%), Gaps = 32/281 (11%) Query: 5 IK--IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFR 57 +K ++ + + F++Y + + VG NG GK+NI +A+SF ++ + R Sbjct: 1 MKAFVEKIVVEGFKSYGRELKEIPIGSGFVAIVGPNGAGKSNIGDALSFALGIATTKTLR 60 Query: 58 RASYADVT--RIGSP---SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 + + + R G ++ R EG + D ++ + + + R ++N V +R Sbjct: 61 AKNLSYLIFSRDGEKAPYAYVEVHFRNEGAFPVPDENVVVSRKVTKDGRSTFKVNGVTVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161 D + ++ L + + +ERR+ ++ + + + +R + D Sbjct: 121 EKDLKDFLSKAGIYENGYNVVLQGDIVKFLKMTPVERRKVIEDVAGISEYEAKKQRAIND 180 Query: 162 FERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + +R LL E + ++ + R I LS I ++ + Sbjct: 181 LMEVDIKIRELKLLLEEIRIQLDKLKEEKDKLEKYRKLQEEKRDTEIAILSKEIKKFRSE 240 Query: 219 ENFPHIKLSLTGFL------DGKFDQSFCALKEEYAKKLFD 253 E +L + + ++ + KEE K+L D Sbjct: 241 EEKLSEELEGHQGRLAVIKEEIREKEAILSEKEEKLKELSD 281 >gi|56693118|ref|YP_164705.1| hypothetical protein LP65_gp070 [Lactobacillus phage LP65] gi|54633619|gb|AAV35890.1| orf70 [Lactobacillus phage LP65] Length = 638 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 1/112 (0%) Query: 5 IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +K++ + I FR+ SL D+ T+ G NG GK++I AI + + + + Sbjct: 1 MKLETIKIRNFRSIRSLDFKIDSRGLTLISGKNGQGKSSIYAAILYALFNKTQKGQTADA 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 + + S E + + +++ + +N+V Sbjct: 61 IINDVAKKNTSVILNYENAGVRYRVCRYRKHKENHNKVLFYVNEVEKTSSSN 112 Score = 43.7 bits (102), Expect = 0.050, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 8/150 (5%) Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT--LIGPHRSDLIVDYCDKAITIA 285 + F+ + + E+Y L DG ++S T G + + A + Sbjct: 486 IKSFVLEQVYPAINESLEKYMSVLTDGSISATISAVTENKSGNVSDKINIKVFRDAESTD 545 Query: 286 H--GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 + S+GEQ+ V + L+ +S+ +G +L LDEI LD + + ++ + Sbjct: 546 YDSLSSGEQRRFDVALSLSLQDYVSSNSGIN-VLFLDEIFDSLDAVGVDKVMTLLKEKSK 604 Query: 344 Q---IFMTGTDKSVFDSLNETAKFMRISNH 370 Q +F+ + D+ + K ++ Sbjct: 605 QYSSVFVISHSTELKDNFDNEIKVVKTEAG 634 >gi|255582489|ref|XP_002532030.1| Structural maintenance of chromosome 1 protein, putative [Ricinus communis] gi|223528300|gb|EEF30346.1| Structural maintenance of chromosome 1 protein, putative [Ricinus communis] Length = 1220 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 9/128 (7%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 KI L I F++Y + T +G NG GK+N+++AISF+ R R A Sbjct: 9 KILKLEIENFKSYKGQQTIGPFKDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68 Query: 63 DVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 D+ R + R+ + T +I+ V+ DE N Sbjct: 69 DLIYAYDDREKEQKGRRAYVRLVYLLASGSELHFTRTITSSGSSEYRIDGKVVNW-DEYN 127 Query: 118 KHLRISWL 125 LR + Sbjct: 128 GRLRSLGI 135 >gi|323352714|ref|ZP_08087684.1| DNA repair protein RecN [Streptococcus sanguinis VMC66] gi|322121750|gb|EFX93496.1| DNA repair protein RecN [Streptococcus sanguinis VMC66] Length = 552 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGS-------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+ +G E ++ I+ E +IN ++ + Sbjct: 57 HGASKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169 + + D+ LD + R++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGRYQETFDRYRSLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L + +E QMAE+ ++ R ++N Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221 >gi|157864643|ref|XP_001681030.1| structural maintenance of chromosome 3 protein [Leishmania major strain Friedlin] gi|68124324|emb|CAJ02179.1| putative adaptor complex protein (AP) 3 delta subunit 1 [Leishmania major strain Friedlin] Length = 1198 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 29/216 (13%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRAS 60 + IK + IS FR+Y + + VG NG GK+N AI F+ + R A Sbjct: 1 MFIKNIIISGFRSYREQSFPDGLSPRTNVIVGKNGSGKSNFFAAIQFVLNEKFANLRTAE 60 Query: 61 YADVTRIGSPS----------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 ++ +GS F ++ R+ + +++ ++ND Sbjct: 61 RKELFHVGSGRPALSVFVEIVFDNSDGRLVIPGRAEEPEVRIRRTVGLKQDEFRVNDRKF 120 Query: 111 RVVD--ELNKHLRISWLVPSM-------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161 D +L + S P + + ER + + + + R + Sbjct: 121 SASDVHQLLESAGFSSSNPYYVVEQGKIVSLVNMSEEERYQLIKDVAGT--KVYDARRAE 178 Query: 162 FERLM---RGRNRLLTEGYFD-SSWCSSIEAQMAEL 193 E ++ +G+ +TE + +EA+ AEL Sbjct: 179 SEHILAETKGKQGQITESIRELQRLLKELEAETAEL 214 Score = 36.8 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 63/208 (30%), Gaps = 28/208 (13%) Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQM---AELGVKINIARVEMINALSSLIMEYVQKE 219 + + L +S ++ ++ EL ++ + E I + Sbjct: 979 RKALDQHAALQETMKALTSQQGTLSKELDSIHELMEHLDAKKEEAIERTYKQVQYQ---- 1034 Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279 F + L G C+ + + +K D + R + + Sbjct: 1035 -FEEVFKQLVGV-------ESCSAELQLVASAVPNKKEDPYTG------ARIKVSFGLGN 1080 Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV- 338 + S G++ +V + + A AP L DEI A LD + R ++ ++ Sbjct: 1081 PVSHLEQLSGGQKSLVALALIFA-----IQRCDPAPFYLFDEIDAALDAEYRTSVANMMA 1135 Query: 339 -TDIGSQIFMTGTDKSVFDSLNETAKFM 365 Q + + D ++ Sbjct: 1136 RQSSECQFLVATFKTELLDVADKVLGIF 1163 >gi|326489775|dbj|BAK01868.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 1175 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA +V FD G NG GK+NIL++I F ++ R R A Sbjct: 1 MHIKEVCLEGFKSYAGRTVVPGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRAVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S ++ + G + G E A+I++ + + L IN Sbjct: 61 SLQELVYKQGQAGVTKATVSIVFDNSDRARSPLGYEDSAEITVTRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + + + V + + Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQG 148 >gi|254829875|ref|ZP_05234530.1| DNA repair and genetic recombination [Listeria monocytogenes 10403S] Length = 563 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG AD R Sbjct: 2 LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G + A +E +D + LE RS + +IN ++ Sbjct: 57 HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L + + RF + +++ +++ + + Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189 + + Q Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197 >gi|16803408|ref|NP_464893.1| DNA repair and genetic recombination [Listeria monocytogenes EGD-e] gi|47095951|ref|ZP_00233554.1| DNA repair protein RecN [Listeria monocytogenes str. 1/2a F6854] gi|224501689|ref|ZP_03669996.1| DNA repair and genetic recombination [Listeria monocytogenes FSL R2-561] gi|254898467|ref|ZP_05258391.1| DNA repair and genetic recombination [Listeria monocytogenes J0161] gi|254912042|ref|ZP_05262054.1| DNA repair protein RecN [Listeria monocytogenes J2818] gi|254936369|ref|ZP_05268066.1| DNA repair protein RecN [Listeria monocytogenes F6900] gi|16410784|emb|CAC99446.1| DNA repair and genetic recombination [Listeria monocytogenes EGD-e] gi|47015697|gb|EAL06627.1| DNA repair protein RecN [Listeria monocytogenes str. 1/2a F6854] gi|258608960|gb|EEW21568.1| DNA repair protein RecN [Listeria monocytogenes F6900] gi|293590008|gb|EFF98342.1| DNA repair protein RecN [Listeria monocytogenes J2818] Length = 563 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG AD R Sbjct: 2 LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G + A +E +D + LE RS + +IN ++ Sbjct: 57 HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L + + RF + +++ +++ + + Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189 + + Q Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197 >gi|332975044|gb|EGK11950.1| hypothetical protein HMPREF0476_0190 [Kingella kingae ATCC 23330] Length = 686 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHT----IFVG-DNGVGKTNILEAISF 49 + I + + F++YA F + +G +NG GKT +LEAI Sbjct: 1 MWISKIKLHNFKSYADAEFTFPEPQNGKNLVLIGAENGHGKTTLLEAIYL 50 >gi|217964486|ref|YP_002350164.1| DNA repair protein RecN [Listeria monocytogenes HCC23] gi|217333756|gb|ACK39550.1| DNA repair protein RecN [Listeria monocytogenes HCC23] gi|307570950|emb|CAR84129.1| DNA repair protein [Listeria monocytogenes L99] Length = 563 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG AD R Sbjct: 2 LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G + A +E +D + LE RS + +IN ++ Sbjct: 57 HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L + + RF + +++ +++ + + Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189 + + Q Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197 >gi|92112829|ref|YP_572757.1| chromosome segregation protein SMC [Chromohalobacter salexigens DSM 3043] gi|91795919|gb|ABE58058.1| Chromosome segregation protein SMC [Chromohalobacter salexigens DSM 3043] Length = 1164 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 55/372 (14%), Positives = 115/372 (30%), Gaps = 55/372 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ + + F+++ ++ + F T VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLTSIKLVGFKSFVDAVNVPFAGNMTAIVGPNGCGKSNIIDAVRWVMGESSAKTLRGES 60 Query: 61 YADVTRI--------GSPSFFSTFARVEGMEG-----LADISIKLETRDDRSVRCLQIND 107 DV G S F +G G A+IS+K + D N Sbjct: 61 MTDVIFNGSTGRSPVGQASIELVFDNSDGTMGGAYAQYAEISVKRQVTRDSQSNYFF-NG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 R D ++ + L P I + R + ++ R Sbjct: 120 QKCRRRD-ISDLFLGTGLGPRSYAIIGQGMISRLVEARPEELRSTLEEAAGISKYKERRR 178 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 L + I ++ + + L + + + Sbjct: 179 ETENRLRRTQENLERLDDIREEL-----------DKQLERLKRQADAARRYQTLKDDEYR 227 Query: 228 LTG---FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP------HRSDLIVDYC 278 L G L G+ +S +E ++L + + + +R ++ + Sbjct: 228 LKGELALLRGRALRSQQEGQERQVRELETQVEREILGQRQCESQLEESRLAHDEIAAELE 287 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL---------DED 329 TG + + + + + +D+ L D++ Sbjct: 288 AHQ--ARFYETG----AAIA-RIEQSIEHARSRDQQLAQDIDDARRELTELEQLGAHDDE 340 Query: 330 KRNALFRIVTDI 341 +R AL + I Sbjct: 341 RRAALDERLESI 352 >gi|67526005|ref|XP_661064.1| hypothetical protein AN3460.2 [Aspergillus nidulans FGSC A4] gi|40743814|gb|EAA63000.1| hypothetical protein AN3460.2 [Aspergillus nidulans FGSC A4] Length = 1548 Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 95/286 (33%), Gaps = 40/286 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 ++ + F + ++ VG NG GK+ +L AI+ G+ R S Sbjct: 106 LERVECYNFMCHDHFQVELGPLINFIVGKNGSGKSAVLTAITLCLGGKASTTNRGQSLKS 165 Query: 64 VTRIGSPSFFSTFARVEGMEGLADI------SIKLETRDDRSV----RCLQIND----VV 109 + G S + R++ A + SI +E +S + N Sbjct: 166 FIKEGKESA-TIIVRIKNQGDGAYLPDDLGKSIIVERHFSKSGASSFKIKADNGRIFSTK 224 Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRM 159 +D + H + + P + + S E+ +F + +D + R + Sbjct: 225 RTELDAIIDHFTLQFENPMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLDQDY-RLI 283 Query: 160 IDFERLMRGRNRLLTEGYFDSSWC----SSIEAQMAELGVKINIARVEMINALSSLIMEY 215 ++ + + + D S + E ++ E+ + R + Sbjct: 284 EEYGDQIEEK---IKSKQQDVSVLKNRRDAAERKL-EMSDQQENLRER--QRKLRRQAAW 337 Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 Q E I+ SL + D ++ E A+ R++++ + Sbjct: 338 AQVEEQERIRDSLIAEIS-SLDSKISEVEAEVARCDAAIREVEAEA 382 >gi|328771443|gb|EGF81483.1| hypothetical protein BATDEDRAFT_34779 [Batrachochytrium dendrobatidis JAM81] Length = 1127 Score = 56.5 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 16/137 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63 I+ + + F ++ L++ ++ VG NG GK+ IL A++ G+ GF R + Sbjct: 83 IERVELVNFMCHSYLQVSLGSKINFIVGHNGSGKSAILTALTVCLGGKAGFTNRGNNLKA 142 Query: 64 VTRIGSP-SFFSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVIRV-- 112 + + G + + R +G + + K+ S + ++ + Sbjct: 143 LIKTGEDVASVTVKIRNKGPDAYKASVYGDSITVERKIVRDGQNSYKIRDVHGHTVSTSH 202 Query: 113 --VDELNKHLRISWLVP 127 + +N H++I P Sbjct: 203 GDLMSINDHMQIVVDNP 219 >gi|46907594|ref|YP_013983.1| DNA repair protein RecN [Listeria monocytogenes serotype 4b str. F2365] gi|226223969|ref|YP_002758076.1| DNA repair and genetic recombination protein RecN [Listeria monocytogenes Clip81459] gi|254993063|ref|ZP_05275253.1| DNA repair and genetic recombination protein RecN [Listeria monocytogenes FSL J2-064] gi|255521542|ref|ZP_05388779.1| DNA repair and genetic recombination protein RecN [Listeria monocytogenes FSL J1-175] gi|46880862|gb|AAT04160.1| DNA repair protein RecN [Listeria monocytogenes serotype 4b str. F2365] gi|225876431|emb|CAS05140.1| DNA repair and genetic recombination protein RecN [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467506|gb|EGF38575.1| DNA repair and genetic recombination protein RecN [Listeria monocytogenes 1816] gi|332311809|gb|EGJ24904.1| DNA repair protein RecN [Listeria monocytogenes str. Scott A] Length = 563 Score = 56.5 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG AD R Sbjct: 2 LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G + A +E +D + LE RS + +IN ++ Sbjct: 57 HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L + + RF + +++ +++ + + Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189 + + Q Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197 >gi|327489510|gb|EGF21303.1| DNA repair protein RecN [Streptococcus sanguinis SK1058] Length = 552 Score = 56.5 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P +G E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169 + + D+ LD + ++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGLYQETFDRYRSLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L + +E QMAE+ ++ R ++N Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221 >gi|323464671|gb|ADX76824.1| chromosome segregation SMC protein [Staphylococcus pseudintermedius ED99] Length = 1190 Score = 56.5 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 93/272 (34%), Gaps = 38/272 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K ++ F+++A + FD T VG NG GK+NI +AI L R R + Sbjct: 2 VYLKSIDAYGFKSFAEATQIQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSARSLRGSK 61 Query: 61 YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 D+ G+ FA V+ + + + + R L N R Sbjct: 62 MEDIIFSGAQHRNAQNFAEVQLKLDNSKGLLNFDATEVIVTRRLYRNGDSEFYVNNERRR 121 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++++ S L I S +RR+ ++ + Sbjct: 122 LKDIHELFLDSGLGKEAFSIISQGRVDEVLNAKPTDRRQIIEESAGVL------------ 169 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + + L + + +E + +L RVE + +++ EY+Q + Sbjct: 170 KYKKRKEASLEKLSHTEDNLTRVEDILYDL-----EGRVEPLKEEAAIAKEYLQLSDILK 224 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255 D Q+ A + +L + Sbjct: 225 ESDIRVTVHDIVSHQTQIAEHDTALNELKSQQ 256 >gi|119871816|ref|YP_929823.1| SMC domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673224|gb|ABL87480.1| SMC domain protein [Pyrobaculum islandicum DSM 4184] Length = 702 Score = 56.5 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 3/111 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA---SYAD 63 I+ + + F+ +A F G NG GKT+I+EA+S G + R ++D Sbjct: 2 IRKIELYNFKAHAKAVFKFGEGVNFIYGPNGSGKTSIMEAVSIALFGSQWVRRVGGRWSD 61 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 + G+ + + + E S L I+ V+ D Sbjct: 62 YLKRGASVGEVRLFLNHMGQEVLIVRRFGEEGSSTSGTYLAIDGAVVARGD 112 Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%) Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 IE ++ E+ ++ R E + L + +I++ + Sbjct: 524 KRQLEDIERELIEVEKELEKNRYE-VQKLDKALGIAR------NIRVVIGELKPLARQIL 576 Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGP-HRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 A+ EE R + L+ + + V+ I S GEQ ++ + Sbjct: 577 TKAINEELNSIFLKLRHKEVFRSVQLVEIDGKYSIRVNTPAGYIDHRLLSLGEQNLLAIS 636 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341 + +A AR + G AP ++ DE + HLDE+ R + ++ D+ Sbjct: 637 LRVALARAL---LGGAPFMMFDEPTEHLDEEHRRKIVELIRDL 676 >gi|88706805|ref|ZP_01104506.1| predicted ATP-dependent endonuclease, OLD family protein [Congregibacter litoralis KT71] gi|88698986|gb|EAQ96104.1| predicted ATP-dependent endonuclease, OLD family protein [Congregibacter litoralis KT71] Length = 617 Score = 56.5 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 ++I L I +R+ SL D+ T+ G NG GK+NIL+AI+ Sbjct: 1 MRITNLKIKNYRSIESLNTRLDS-LTMLCGPNGSGKSNILKAITL 44 >gi|319892232|ref|YP_004149107.1| Chromosome partition protein smc [Staphylococcus pseudintermedius HKU10-03] gi|317161928|gb|ADV05471.1| Chromosome partition protein smc [Staphylococcus pseudintermedius HKU10-03] Length = 1190 Score = 56.5 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 93/272 (34%), Gaps = 38/272 (13%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K ++ F+++A + FD T VG NG GK+NI +AI L R R + Sbjct: 2 VYLKSIDAYGFKSFAEATQIQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSARSLRGSK 61 Query: 61 YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112 D+ G+ FA V+ + + + + R L N R Sbjct: 62 MEDIIFSGAQHRNAQNFAEVQLKLDNSKGLLNFDATEVIVTRRLYRNGDSEFYVNNERRR 121 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163 + ++++ S L I S +RR+ ++ + Sbjct: 122 LKDIHELFLDSGLGKEAFSIISQGRVDEVLNAKPTDRRQIIEESAGVL------------ 169 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + + L + + +E + +L RVE + +++ EY+Q + Sbjct: 170 KYKKRKEASLEKLSHTEDNLTRVEDILYDL-----EGRVEPLKEEAAIAKEYLQLSDILK 224 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255 D Q+ A + +L + Sbjct: 225 ESDIRVTVHDIVSHQTQIAEHDTALNELKSQQ 256 >gi|221061023|ref|XP_002262081.1| chromosome segregation protein [Plasmodium knowlesi strain H] gi|193811231|emb|CAQ41959.1| chromosome segregation protein, putative [Plasmodium knowlesi strain H] Length = 1217 Score = 56.5 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 19/145 (13%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 + I+ + + F++Y + + F Q G NG GK+N+L+AI F+ R Sbjct: 1 MHIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60 Query: 60 SYADVT-RIGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQIN 106 ++ + G + E + +I+I + R L + Sbjct: 61 RLDELIYKQGQAGITKGSVTIKFNNEQKPSPLQEPYRDMKNITITRQIVLGGRNRYLLNS 120 Query: 107 D-VVIRVVDELNKHLRISWLVPSMD 130 + + + + L+++ P Sbjct: 121 HNAKPKDISDFFQSLKLNINNPHFL 145 >gi|326564120|gb|EGE14358.1| condensin subunit Smc [Moraxella catarrhalis 46P47B1] Length = 1208 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L ++ F+++A+ F T VG NG GK+N+++AI ++ + + R + Sbjct: 1 MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60 Query: 61 YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105 +DV G + A VE + I +L + S+R I Sbjct: 61 MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120 Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155 N +R D L + RI M+ R F++ R+ Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178 Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 +R+ D + ++ +++ L + ++ ++ L Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + E+I L + QK I+ +G + K D ++ E L R ++ Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286 >gi|313608924|gb|EFR84681.1| DNA repair protein RecN [Listeria monocytogenes FSL F2-208] Length = 563 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG AD R Sbjct: 2 LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G + A +E +D + LE RS + +IN ++ Sbjct: 57 HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L + + RF + +++ +++ + + Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189 + + Q Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197 >gi|225870052|ref|YP_002745999.1| DNA repair protein [Streptococcus equi subsp. equi 4047] gi|225699456|emb|CAW92962.1| putative DNA repair protein [Streptococcus equi subsp. equi 4047] Length = 553 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 27/259 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ L R + +V R Sbjct: 2 LLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMLLGAR-----ASTEVIR 56 Query: 67 IGS-----PSFFSTFA--RVEGMEGLADISIKLETRDDR-----SVRCLQIND--VVIRV 112 G+ FFS A + + + IS++ E R +IN V + Sbjct: 57 HGADKAEIEGFFSVDANPHLAAVLAESGISMEEELILRRDIFANGRSVSRINGQMVTVST 116 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRR----FLDRMVFAIDPRHRRRMIDFERLMRG 168 + +L + L + D+ + F D + +++ ++ L R Sbjct: 117 LKKLGQFL--VDIHGQHDQEELMRPQLHQHILDSFGDEAFDQLKQSYQQIFDRYKALRRQ 174 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMIN-ALSSLIMEYVQKENFPHIKL 226 + + Q+ E+ + +++N L+ + L Sbjct: 175 ALEKQKNEKEHQARLDLLAFQIGEIEAADLVRGEDDLLNQERQRLLNHKKIADTLTSAYL 234 Query: 227 SLTGFLDGKFDQSFCALKE 245 SL Q ++ E Sbjct: 235 SLDNEDFSSLSQVRSSMNE 253 >gi|261417752|ref|YP_003251434.1| DNA repair protein RecN [Geobacillus sp. Y412MC61] gi|319767436|ref|YP_004132937.1| DNA repair protein RecN [Geobacillus sp. Y412MC52] gi|261374209|gb|ACX76952.1| DNA repair protein RecN [Geobacillus sp. Y412MC61] gi|317112302|gb|ADU94794.1| DNA repair protein RecN [Geobacillus sp. Y412MC52] Length = 573 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + R Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L S E QMA R++++ +E E + Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALELGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|254167241|ref|ZP_04874094.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469] gi|197624097|gb|EDY36659.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469] Length = 1178 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 26/169 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 + +K + + F+++ RL F T G NG GK+NI +AI F+ + R Sbjct: 1 MYLKAIELENFKSFGRKTRLEFKEGFTAISGPNGSGKSNITDAILFVLGPKSSKKIRAQR 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-------------IN 106 D+ G + + + RV + D + L+ + + R ++ IN Sbjct: 61 LTDLIYNGGKNGRPADYCRVSLIFDNRDRVLPLDEDEVKLTRYIKRANNELGYNSYFYIN 120 Query: 107 DVVIRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFLDRM 147 D R+ D + + + RI +ERR LD + Sbjct: 121 DEQARLQDFNSILIHAKIEADGYNFVQQGDVTRIVEMTPVERRTILDDI 169 >gi|167533572|ref|XP_001748465.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772984|gb|EDQ86629.1| predicted protein [Monosiga brevicollis MX1] Length = 1072 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 3/113 (2%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62 I+ + + F Y+ + + +G NG GK+ ++ AI G+ R Y Sbjct: 41 AIRRIYMENFVTYSKVEFHVGPGLNVILGPNGSGKSTVICAICLCLAGKPELLGRATHYK 100 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 R G + + + + + + R E Sbjct: 101 QFIRTNEDRAVIEVELDMGKNAPLTVRRVMTIDRNNNGKASSNFSLNGRPATE 153 >gi|315053535|ref|XP_003176141.1| chromosomes protein 5 structural maintenance [Arthroderma gypseum CBS 118893] gi|311337987|gb|EFQ97189.1| chromosomes protein 5 structural maintenance [Arthroderma gypseum CBS 118893] Length = 1196 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 94/314 (29%), Gaps = 29/314 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63 I + ++ F Y S + + +G NG GK+ + AI L G + R A+ Sbjct: 122 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPAYLGRAKDVAE 181 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDEL------ 116 + G+ ++ EG+ I T + IN +R L Sbjct: 182 FVKHGADEAI-IEIELKAREGMNQNPIICRTIKREGNKSTFTINGQSVRQNVVLSLAKSF 240 Query: 117 -NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + + +P A P + D + L G+ +L E Sbjct: 241 SIQIDNLCQFLPQDKVSEFAALSPVELLHSTQRAAAGPEMAKWHDDLKELRSGQKDILEE 300 Query: 176 GYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFL 232 +++E QM V+ R E+ L +E ++ F + + L Sbjct: 301 SASQREHLANLEKRQQMQREDVERMKQREEVKKRLK--FLEMLRPLPRFNSCRRESSAIL 358 Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST-GE 291 + K Q +EE +KL + + D S GE Sbjct: 359 EQK--QRLMREQEELKQKLEPALRA---------VNSKRDYYTQVEAVLRQKRLSSQNGE 407 Query: 292 QKVVLVGIFLAHAR 305 + + L Sbjct: 408 EAAAAISEKLIQVD 421 >gi|302824711|ref|XP_002993996.1| hypothetical protein SELMODRAFT_137981 [Selaginella moellendorffii] gi|300138158|gb|EFJ04936.1| hypothetical protein SELMODRAFT_137981 [Selaginella moellendorffii] Length = 1172 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF-LSPGR--GFRRA 59 + +K +++ F++YA+ FD G NG GK+NIL++I F L + R + Sbjct: 1 MFVKEISLEGFKSYATSTFVSNFDPCFNAITGLNGSGKSNILDSICFVLGITKLEQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G V G E +++I++ + + L IN Sbjct: 61 NLNELVYKQGQAGVTKATVSVTFDNSDRSRSPIGFEDMSEITVTRQVVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 V + N + V + + Sbjct: 120 HVAQPSRVQNLFHSVQLNVNNPHFLIMQG 148 >gi|224541341|ref|ZP_03681880.1| hypothetical protein CATMIT_00501 [Catenibacterium mitsuokai DSM 15897] gi|224525778|gb|EEF94883.1| hypothetical protein CATMIT_00501 [Catenibacterium mitsuokai DSM 15897] Length = 978 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 46/323 (14%), Positives = 101/323 (31%), Gaps = 54/323 (16%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K + + F+++A + F T VG NG GK+NI +AI ++ + R + Sbjct: 1 MYLKRIELHGFKSFADKSVVEFMPGITGIVGPNGCGKSNITDAIRWVLGEKSAKAMRGET 60 Query: 61 YADVT--------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV G F + +++ R R+ +N R Sbjct: 61 MTDVIFSGSEDRKAQGEAEVTLVFNNEDHFLDFDSTEVEITRRLYRTGDSEFLLNREQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161 + D L + +++ +RR + V R + Sbjct: 121 LKDITDLIMDTGLGRDSLSIISQNNINEFVKSKPEDRRAMFEEAAGVAKYKKRKIETVRK 180 Query: 162 FERL-------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 ER + + L + + ++ E+ V + + + ++ Sbjct: 181 LERTTDNLDRVQDICSELERQIGPLKRQKEKAETYLEFKEELQEVEVSVLVKEISTLSEE 240 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGK-----------FDQSFCALKEEYAKKLFD---- 253 + + ++ I LD K DQ L+E+ + + + Sbjct: 241 LKTLNKELEDLENERITNDGAVILDEKQSEELEKKMYALDQEVNELQEKLLEAMNEVSSL 300 Query: 254 ---GRKMDSMSRRTLIGPHRSDL 273 ++D+ + L + D+ Sbjct: 301 ETQKVEIDANRKHILETTSQEDI 323 >gi|123501445|ref|XP_001328078.1| SMC family, C-terminal domain containing protein [Trichomonas vaginalis G3] gi|121911016|gb|EAY15855.1| SMC family, C-terminal domain containing protein [Trichomonas vaginalis G3] Length = 1177 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 4/90 (4%) Query: 1 MTNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--F 56 M+ R+ + + + F++Y ++ F+ Q T VG NG GK+N+++A+ F+ R Sbjct: 1 MSERLIVTQIVLENFKSYYGRQIVGPFNNQLTCIVGPNGSGKSNLIDALLFVFGFRAKRM 60 Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLA 86 R + + G ++ARVE A Sbjct: 61 RHSKLTGLIYNGPDHPNISYARVEVHFAKA 90 >gi|114763721|ref|ZP_01443115.1| SMC protein [Pelagibaca bermudensis HTCC2601] gi|114543722|gb|EAU46735.1| SMC protein [Roseovarius sp. HTCC2601] Length = 1151 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 51/305 (16%), Positives = 106/305 (34%), Gaps = 36/305 (11%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 ++ L ++ F+++ LV T VG NG GK+N+LEA+ ++ + + R + Sbjct: 1 MRFSRLRLTGFKSFVDPTDLVISEGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGSG 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108 DV G+ S F ++ + LA +++ R R V + N Sbjct: 61 MEDVIFAGASSRPARNFAEVCLTMDNSDRLAPAGFNDSDQLEIVRRITRDVGSAYKTNGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR-----MVFAIDPRH 155 +R D L P++ R + + RRR L+ ++ Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKNRRRILEEAAGISGLYQRRHEA 180 Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE----MINALSSL 211 ++ E + + ++ + S Q A R + Sbjct: 181 ELKLNGTEANLLRVDDVIEQLAAQLSQLERQAKQAARYRAIGTDLRRAEGLLLYRRWKEA 240 Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL--IGPH 269 ++ E +++ +G ++ L+ E + L R+ ++++ L +G Sbjct: 241 DEARLKAEAEHRERVTAAAQAEGT-ARAAAKLRAEREEALPSLREEEAIAVAILQRLGVQ 299 Query: 270 RSDLI 274 R L Sbjct: 300 RDALA 304 >gi|330835101|ref|YP_004409829.1| SMC domain-containing protein [Metallosphaera cuprina Ar-4] gi|329567240|gb|AEB95345.1| SMC domain-containing protein [Metallosphaera cuprina Ar-4] Length = 859 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++I+ +++ +F ++ ++ F + + +G NG GK++I++AI+F + + R + +++ Sbjct: 1 MRIESVSLKDFLSHDRTQVNFKGEINVIIGQNGAGKSSIIDAITF-ALFKEARE-NVSEL 58 Query: 65 TRIGSPSFFSTFARVEG 81 R GS S EG Sbjct: 59 IRKGSKSAEVELILKEG 75 Score = 40.7 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%) Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 + + I S GE+ + + + +A AR + G ++LDE + HLD ++R L I+ Sbjct: 759 GQELQIGLLSGGERIALALALRIAIARSLM---GELGFMILDEPTTHLDSERRTELLSII 815 Query: 339 TDIGS---QIFMTGTDKSVFD 356 D + QI + D+ V Sbjct: 816 RDSMNVVPQIIVVTHDEEVLQ 836 >gi|323479630|gb|ADX79069.1| putative ATP-dependent endonuclease of the OLD family protein [Enterococcus faecalis 62] Length = 618 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 55/395 (13%), Positives = 120/395 (30%), Gaps = 81/395 (20%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-------- 58 IK L I ++ Y S+ L + +G N VGKT++LEA+ ++R Sbjct: 5 IKELRIRNYKCYESIDLDLKDS-NLLLGVNNVGKTSLLEALELCFT--PYKRISEEIVFV 61 Query: 59 ------ASYADVT---------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103 + + R + +F F + E +++ Sbjct: 62 KKNEILSKDKSIILDILIESKEREFTDDWFDLFGVLIFDEDEKQY-----VGIRTTIKYN 116 Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR-HRRRMIDF 162 +N + + SW F + +R + + + P + D Sbjct: 117 PVNGEYQ-----IERKGMNSWPSSDEVETFDNFATDR---ITKSIIEAFPVFYLDAKRDI 168 Query: 163 ERLMRGR----NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 M + RL+ + + +E + E+ I E++ LS + E Q Sbjct: 169 ASEMNDKYSYFGRLVKDIKLSEENLTEMERHLNEINDNIVEN-SEVLKHLSVSLNEISQV 227 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 + + + + K ++ + K + Sbjct: 228 LDSGESSIQI-NPVSRKIKDLNQGMEIRFMDKKSES--------------------FSIN 266 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHA------RLISNTTGFAPILLLDEISAHLDEDKRN 332 ++ + + + L+ + + F PILLL+E AHL + Sbjct: 267 NQGMGT--------RSWATFLTLSAYIKWKTKEMADKESAFHPILLLEEPEAHLHPQAQR 318 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367 ++ + + Q ++ T + S + + + Sbjct: 319 KIYSQMNKLDGQKVIS-THSPIIASQANIEEIIHV 352 >gi|320580922|gb|EFW95144.1| chromosomal ATPase, putative [Pichia angusta DL-1] Length = 1216 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 73/189 (38%), Gaps = 30/189 (15%) Query: 6 KIKFLNISEFRNYASLR-LVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61 ++ L + F++Y + + F + T +G NG GK+N+++AISF+ + R + Sbjct: 3 RLVGLELYNFKSYRGISSIGFGSSFFTSIIGPNGSGKSNMMDAISFVLGIKSSHLRSNNL 62 Query: 62 ADVTRIG----------SPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVV 109 D+ G A V + ++ I R ++ +IN+ Sbjct: 63 KDLIYRGRVLGESDDGEEKENDPCTAYVMAIYEKSNGDILKLKRSINETGTSEYRINNKT 122 Query: 110 I---------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 + R + L K +++I S E R ++ + +ID + Sbjct: 123 VSATQYADVLRKENILIKARNFLVFQGDVEKIASQSPEELTRLIENISGSIDHK-----K 177 Query: 161 DFERLMRGR 169 D++ LM + Sbjct: 178 DYDVLMEEK 186 >gi|312622589|ref|YP_004024202.1| chromosome segregation protein smc [Caldicellulosiruptor kronotskyensis 2002] gi|312203056|gb|ADQ46383.1| chromosome segregation protein SMC [Caldicellulosiruptor kronotskyensis 2002] Length = 1177 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 21/174 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + IK+L I F+++ R+ F+ T VG NG GK+NI +AI + + R A Sbjct: 1 MYIKWLEIYGFKSFCEKTRIEFEKGITAIVGPNGCGKSNITDAIRWALGEQSLKLLRAAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ F + G+ I + + R RS IN + R Sbjct: 61 QEDLIFAGTEKRKSQGFAEVSICFDNSSGVLPIDYQEVVITRRLFRSGESEFFINKIPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157 + D L K +D I + +ER R + ++R+ Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVERYRIFEEACGITKYKYRK 174 Score = 38.0 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 35/171 (20%) Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 K R++ + + + + + L + F ++F +K +++ F+ Sbjct: 989 EKRLQERMQFLQKQIEDLQKTT--DELKRLISHLEKNMKEIFLENFEKIKSLFSEIFFE- 1045 Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAI--------------TIAHGSTGEQKVVLVGIF 300 L G DL + D + I S GE+ +V + + Sbjct: 1046 ----------LFGGGSCDLKLIGQDGELGVDIDVKPPGKKLQNINLLSGGEKALVAIALL 1095 Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348 A T + + +LDEI + LDE + + ++ +Q I +T Sbjct: 1096 FAFL-----TFKGSLLCILDEIDSSLDEANVQRFAQYIKNLNNQSQIIIVT 1141 >gi|308271408|emb|CBX28016.1| hypothetical protein N47_G33400 [uncultured Desulfobacterium sp.] Length = 1061 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 84/246 (34%), Gaps = 36/246 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +K+K L IS F+++ + F A VG NG GK+NI++A+ ++ + R S Sbjct: 7 MKLKSLEISGFKSFNDKANIEFPAGVCAIVGPNGCGKSNIVDALKWVMGEQSVKQLRGKS 66 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-------INDV 108 DV G+ + + G A +K + R + +N Sbjct: 67 MEDVIFAGANGKPQLNMAEVSLTLANDNGSAPEELKDFAEIMLTRRLYRSGESEYYLNKR 126 Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 R+ D L ++ I ERR F++ R+ R Sbjct: 127 PCRLKDIHNIFLGSGLGPRSYAVIQQGNIGAIIDAGPHERRFFIEEAAG--VTRYNSRKN 184 Query: 161 D-FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-----GVKINIARVEMINALSSLIME 214 + ++ LL + S I QMA L +I + I L + I Sbjct: 185 EALRKVEATNQNLLRV----TDIISEINRQMAVLKRQARKAEIFKNLQDRIKKLDTDITI 240 Query: 215 YVQKEN 220 Y E Sbjct: 241 YYFDEY 246 >gi|33338074|gb|AAQ13659.1|AF176781_1 MSTP142 [Homo sapiens] Length = 205 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63 +K + I F++Y + + T +G NG GK+N+++AISF+ + R + D Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63 Query: 64 VTR---IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111 + +G P+ F V EG D + S +IN+ V++ Sbjct: 64 LIHGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSE--YKINNKVVQ 113 >gi|316978493|gb|EFV61475.1| putative RecF/RecN/SMC N domain protein [Trichinella spiralis] Length = 1819 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYAD 63 ++ + + F++Y R+ + T +G NG GK+N+++AI F+ R +D Sbjct: 4 LREIELENFKSYKGYQRIGPFKKFTAIIGPNGSGKSNLMDAICFVLGEKTSSLRVRKISD 63 Query: 64 VT 65 + Sbjct: 64 LI 65 >gi|242059587|ref|XP_002458939.1| hypothetical protein SORBIDRAFT_03g043060 [Sorghum bicolor] gi|241930914|gb|EES04059.1| hypothetical protein SORBIDRAFT_03g043060 [Sorghum bicolor] Length = 1175 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA +V FD G NG GK+NIL++I F ++ R R A Sbjct: 1 MHIKEVTLEGFKSYAGRTVVSGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S ++ + G + G E +I++ + + L IN Sbjct: 61 SLQELVYKQGQAGVTKATVSIVFDNSDRSRSPLGYEDSPEITVTRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + + + V + + Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQG 148 >gi|225378327|ref|ZP_03755548.1| hypothetical protein ROSEINA2194_03988 [Roseburia inulinivorans DSM 16841] gi|225209764|gb|EEG92118.1| hypothetical protein ROSEINA2194_03988 [Roseburia inulinivorans DSM 16841] Length = 556 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 70/229 (30%), Gaps = 28/229 (12%) Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV--EMINALSSLIM 213 + +++ L + + Q A R+ +M+ + Sbjct: 318 FSAIRQYKK--NQNRAKLQTASMQAEQLRKLREQEAMEAQMQQKKRLADQMLTEWKDSLW 375 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQ-------------SFCALKEEYAKKLFDGRKMDSM 260 E + +++ G Q + + + + + D + Sbjct: 376 EKENRLFNLEEEITRQGVQSWAEHQRAEDIQALELAAQEITRISQSFYEDMQDELNAEIS 435 Query: 261 SRRTLIGPHRSD---------LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 +L D L + + + S G + + + + LA +++ Sbjct: 436 RYVSLFTAGAYDSVRLDEQGQLQILTEGREVRPELLSRGTLEQIYLALRLAVGNVVTKE- 494 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360 +LLDE A D+D+ + ++ + +QIF+ K + L + Sbjct: 495 -EPLPILLDEAFAMYDDDRLAQTLQTLSTLQNQIFLFTCQKREVEMLKK 542 Score = 38.0 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 6/113 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKT---NILEAISFL---SPGRGFRR 58 ++IK +I +F + + F + G N GK+ + L A+ F GR Sbjct: 1 MQIKEADIFQFGKLQNKNISFKPGMNVIYGKNEAGKSTLHSFLCAMLFGMEKGRGRSSVT 60 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111 +Y+ +PSF++ + + + +++ +++ + Sbjct: 61 DAYSQYEPWHAPSFYAGALKFTVGQQKFYLERNFYSKEKTDYLRNELDGEELS 113 >gi|171186263|ref|YP_001795182.1| SMC domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170935475|gb|ACB40736.1| SMC domain protein [Thermoproteus neutrophilus V24Sta] Length = 702 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 79/253 (31%), Gaps = 28/253 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RR-ASYAD 63 I+ + + F+ +A G NG GKT+++EA++ G + R +AD Sbjct: 2 IRRIELYNFKAHAKAVFKLGEGVNFIYGPNGSGKTSLMEAVAVALFGSQWVRRTGGRWAD 61 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-------- 115 R G+ + + + E S L I+ + D Sbjct: 62 YLRRGAAAGEVKLHLSHMGREVVVVRRFGEGGSSHSGTYLSIDGSTVARGDADVTAAVAT 121 Query: 116 -----LNKHLRISWLVPSMDRIFSGLSM-----ERRRFLDRMVFAIDPRHRRRMIDFERL 165 + + + ++ R+ R D++ + + ER+ Sbjct: 122 KLGIGVEEFRHLLYIRQGELRLILEEPEYIDRVLRLDEFDKVDELVREAYNELKAKRERV 181 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE-----MINALSSLIMEYVQKEN 220 L S ++ +++E + AR+E + A + + + Sbjct: 182 GGRAEELERRAPQLRSRIEALSRRLSEAEEAL--ARLEADEARFVEAERRYLALRERYIS 239 Query: 221 FPHIKLSLTGFLD 233 + SL L+ Sbjct: 240 LSKERESLEKALE 252 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 15/188 (7%) Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214 + E +R ++ L ++A + ++ AR E L + Sbjct: 503 YAVLRARHEEYLRAKSLALELRR----QLEEARGELAAVEAELAKARTEA-EKLERGLGA 557 Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-HRSDL 273 +I+ L A+ EE R +S L R L Sbjct: 558 AR------NIRSVLGELKPLARQILTKAINEELNAVFLKLRHKESFKSAHLAEVDGRYVL 611 Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333 V I S GEQ ++ + + +A AR + G AP ++ DE + HLDE+ R Sbjct: 612 KVSTPSGPIDHRLLSLGEQNLLALSLRVALARAL---LGGAPFMMFDEPTEHLDEEHRRK 668 Query: 334 LFRIVTDI 341 + +V D+ Sbjct: 669 IVELVRDL 676 >gi|148988508|ref|ZP_01819955.1| hypothetical protein CGSSp6BS73_06760 [Streptococcus pneumoniae SP6-BS73] gi|147926189|gb|EDK77263.1| hypothetical protein CGSSp6BS73_06760 [Streptococcus pneumoniae SP6-BS73] Length = 585 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 13/94 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ K L I FRN++S+ + + + G N GKTN+L AI +L Sbjct: 1 MEFKKLVIENFRNFSSIEVALSNK-NVIFGMNDSGKTNLLFAIRYL----------LDRT 49 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98 R + F + I ++L+ D + Sbjct: 50 IR--NKGFIKSDYHRHDTSRPIKIQLELDLSDRK 81 >gi|320586476|gb|EFW99146.1| structural maintenance of chromosome complex subunit [Grosmannia clavigera kw1407] Length = 1137 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 71/212 (33%), Gaps = 18/212 (8%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RRA 59 I + + F Y + +G NG GK++++ AI G GF R + Sbjct: 94 AIVKVFVENFVTYERAEFDPGPSLNMVIGPNGTGKSSLVCAICL---GLGFHSNVLGRAS 150 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDELN 117 ++ D + G + + + ++L + + R +N +R + + Sbjct: 151 AFGDFVKHGRSHAIVEIELQKRPKDRQNFVVRLRITREDNSRKFWLNGQETSLRKIQSVM 210 Query: 118 KHLRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDFERLMRGRNR 171 + LRI +P R+ + L + + A P + +R+ + + Sbjct: 211 QDLRIQVDNLCQFLPQD-RVAEFAGLNSVDLLAKTLEAAAPTEMKEWQSTLKRIYQEQKE 269 Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203 D+ +E++ + R Sbjct: 270 AQHRMKVDAEQLRVLESRHQAQQADVERYRER 301 >gi|304384743|ref|ZP_07367089.1| DNA repair protein RecN [Pediococcus acidilactici DSM 20284] gi|304328937|gb|EFL96157.1| DNA repair protein RecN [Pediococcus acidilactici DSM 20284] Length = 559 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 22/221 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62 + L+I +F L F T+ G+ G GK+ I++A+ L+ GRG R + Sbjct: 2 LLELSIKDFAIIEKLDASFRQGMTVLTGETGAGKSIIIDAVGLLAGGRGSVDFVRTGADK 61 Query: 63 DVTR--IGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDEL 116 V + +T +E G+E D+ I E ++N ++ + ++ Sbjct: 62 AVLQGVFDIAEIANTKTVLEELGIEPTNDLVITREL-LKTGRSVCRVNGTIVNLNSLKKI 120 Query: 117 NKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 + L + R +F V R++ + +L R N+ L Sbjct: 121 GQTLIDIHGQNEHQELMDSDKHLRLLEQFDYAAVADTKQRYQAAFKAYTKLNRRLNQSLK 180 Query: 175 EGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 + + ++ Q+ E+ ++ R +++N Sbjct: 181 NEHEWNQRVDMLQFQVDEIKAANLIEGEDEELEKRRDQLVN 221 >gi|303256775|ref|ZP_07342789.1| DNA repair protein RecN [Burkholderiales bacterium 1_1_47] gi|302860266|gb|EFL83343.1| DNA repair protein RecN [Burkholderiales bacterium 1_1_47] Length = 551 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 88/259 (33%), Gaps = 31/259 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + LNI +F L L F T G+ G GK+ +++A+ L R +V R Sbjct: 2 LCSLNIRDFVIVDKLDLEFSDGFTALTGETGAGKSILIDALQLLFGARS-----DPEVIR 56 Query: 67 IGSP-----SFFSTFARVEGMEGLADI-----SIKLETRDDRSVRCL-QINDVVI--RVV 113 G+ + F+ +++ ++ + L D R IN + Sbjct: 57 SGAQKSDLTASFTINDKIKTWLEERELSGLNGELVLRRTLDIKGRSRSWINGTTCSLSQL 116 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 EL+ L + + + S LD + P+ + + R + L Sbjct: 117 KELSHMLVVVHGQHAHQSLLRKGSQL--EMLD-AYSGLRPQVDAVRSAWTQ-WREAQKTL 172 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 E ++ + +M +E + LS + E+ + N H +LS + Sbjct: 173 EEARERQAFNQAELERM--------KWFLEDMKELSPVKGEW-ARINEEHTRLSRYNDII 223 Query: 234 GKFDQSFCALKEEYAKKLF 252 ++ AL E L Sbjct: 224 DSCQKAREALTEADYSALE 242 >gi|227515675|ref|ZP_03945724.1| DNA repair protein RecN [Lactobacillus fermentum ATCC 14931] gi|227085978|gb|EEI21290.1| DNA repair protein RecN [Lactobacillus fermentum ATCC 14931] Length = 564 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 61/346 (17%), Positives = 121/346 (34%), Gaps = 40/346 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I L L FD T+ G+ G GK+ I++A+S L+ GRG + R Sbjct: 2 LQELTIDNLAIIDHLSLEFDDHMTVLTGETGAGKSIIIDAVSLLAGGRG-----SQEFIR 56 Query: 67 IGSPSF-----FST------FARVEGM-EGLADISIKLETRDDRSVR-CLQINDVVIR-- 111 G F A+++ + D ++ + RS R +++N ++ Sbjct: 57 KGEEKLSLQGQFEIPKLPGYVAKLDELGISHDDGTLIISREIHRSGRNTIRVNGTLVNAA 116 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMR 167 + +L L + LD+ A + ++ + ++ RL Sbjct: 117 TLKQLGSGLVDIQGQNEHQLLLR--PEAHLGMLDQFANAKVQPLLASYQEQYQEYRRLEA 174 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 N+ + + Q+ E+G A E LI E + E+F I + Sbjct: 175 AVNQKKANEQQWAQRLDMLRYQVKEIGDADLRADEE-----DELIAERERLEHFQQIATT 229 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS-RRTLIGPHRSDLIVDYCDKAITIAH 286 L + D + ++ A + +++ + SD D A H Sbjct: 230 LQQVVGVLNDDEEAPVLDQVATIMNAAQEIAPFDPEYDDLAQSLSDAYYSLQDVANQAGH 289 Query: 287 ----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328 E+++ + LA + + G + L ++ A+ D+ Sbjct: 290 QLDSLEFDEERLATINARLATIADLEHKYGES----LADVLAYYDQ 331 >gi|187933092|ref|YP_001885440.1| chromosome segregation protein SMC [Clostridium botulinum B str. Eklund 17B] gi|187721245|gb|ACD22466.1| chromosome segregation protein SMC [Clostridium botulinum B str. Eklund 17B] Length = 1185 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + +K L+I F+++A L F+ T VG NG GK+NI +A+ ++ + R Sbjct: 1 MFLKSLDIRGFKSFADKTELKFNNGVTAVVGPNGSGKSNISDAVRWVLGEQSVKTLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ + T R R IN+ R Sbjct: 61 MEDVIFSGTQYRKPVGLAQVSLTLDNGDKKLSTEYSEVTVSRRIFRSGESEYLINNKKCR 120 Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145 + D +N + ++ I SG ERR L+ Sbjct: 121 LKDVINLFMDTGIGKEGYSLIGQGKIESILSGRPEERRALLE 162 >gi|149240199|ref|XP_001525975.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146450098|gb|EDK44354.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 1173 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K+ L I F++YA+ + +DA G NG GK+NIL+AI F+ R + Sbjct: 1 MKVDELIIDGFKSYATRTVISGWDASFNAITGLNGSGKSNILDAICFVLGISSMQTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E + IS+ + + + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFNNSEISKSPIGFENCSTISVTRQIILGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + L+ + + + + + Sbjct: 120 HKAQQQTVLSLFQSVQLNINNPNFLIMQG 148 >gi|330982947|gb|EGH81050.1| chromosome segregation protein SMC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 171 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 28/167 (16%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 DV GS S S + +G A+ISI+ + D +N Sbjct: 61 MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLD 145 R D + + L P I + R F++ Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIE 165 >gi|331000118|ref|ZP_08323812.1| DNA repair protein RecN [Parasutterella excrementihominis YIT 11859] gi|329572893|gb|EGG54516.1| DNA repair protein RecN [Parasutterella excrementihominis YIT 11859] Length = 551 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 88/259 (33%), Gaps = 31/259 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + LNI +F L L F T G+ G GK+ +++A+ L R +V R Sbjct: 2 LCSLNIRDFVIVDKLDLEFSDGFTALTGETGAGKSILIDALQLLFGARS-----DPEVIR 56 Query: 67 IGSP-----SFFSTFARVEGMEGLADI-----SIKLETRDDRSVRCL-QINDVVI--RVV 113 G+ + F+ +++ ++ + L D R IN + Sbjct: 57 SGAQKSDLTASFTINDKIKTWLEERELSGLNGELVLRRTLDIKGRSRSWINGTTCSLSQL 116 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 EL+ L + + + S LD + P+ + + R + L Sbjct: 117 KELSHMLVVVHGQHAHQSLLRKGSQL--EMLD-AYSGLRPQVDAVRSAWTQ-WREAQKTL 172 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233 E ++ + +M +E + LS + E+ + N H +LS + Sbjct: 173 EEARERQAFNQAELERM--------KWFLEDMKELSPVKGEW-ARINEEHTRLSRYNDII 223 Query: 234 GKFDQSFCALKEEYAKKLF 252 ++ AL E L Sbjct: 224 DSCQKAREALTEADYSALE 242 >gi|326803326|ref|YP_004321144.1| DNA repair protein RecN [Aerococcus urinae ACS-120-V-Col10a] gi|326650342|gb|AEA00525.1| DNA repair protein RecN [Aerococcus urinae ACS-120-V-Col10a] Length = 570 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 27/207 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F + + FD T+ G+ G GK+ I++A+ L+ GRG D R Sbjct: 2 LQNIVIENFAIIDQVTIDFDEGMTVLTGETGAGKSIIIDALGLLAGGRG-----SVDFIR 56 Query: 67 IGSPSF--------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--I 110 G+ + F + +G+ D + T D + +++N V + Sbjct: 57 YGTKALKLRGIFYLPDFSESGRDFLQDQGIPFDDDQLLITRTLDQKGRNTIKVNGVPLTV 116 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLM 166 ++ EL +L + LD+ + + + ++ + Sbjct: 117 ALLKELGDYLLEIHGQNEHQSLL--DPKNHLDLLDQYAGNRIAQEREAYDKDYQNYRQAK 174 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193 + + ++ Q+ E+ Sbjct: 175 KAVKDFALNEQEVAQRLDLLKFQLNEI 201 >gi|313892797|ref|ZP_07826378.1| chromosome segregation protein SMC [Veillonella sp. oral taxon 158 str. F0412] gi|313442728|gb|EFR61139.1| chromosome segregation protein SMC [Veillonella sp. oral taxon 158 str. F0412] Length = 1184 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L + F+++A + F T +G NG GK+NI +A+ ++ S R R Sbjct: 1 MQLLRLELKGFKSFADKTVVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ S + + D+ + + R R+ IN R Sbjct: 61 AEDIIFSGTEKRKPMSAAEVTLVFDNSDQQLDLDMAEVAITRRIYRTGESEFLINKRSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141 + D L + +D I + ERR Sbjct: 121 LKDIHLLLADTGLGRDSMAIIGQNRIDAILNSKPEERR 158 >gi|313897414|ref|ZP_07830957.1| chromosome segregation protein SMC [Clostridium sp. HGF2] gi|312957784|gb|EFR39409.1| chromosome segregation protein SMC [Clostridium sp. HGF2] Length = 976 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 56/317 (17%), Positives = 102/317 (32%), Gaps = 57/317 (17%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + + F+++A + FD+ VG NG GK+NI +AI L + R + Sbjct: 1 MFLKRIELQGFKSFADKSIITFDSDVIGIVGPNGCGKSNINDAIRWVLGEQSVKSLRGNN 60 Query: 61 YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ---------INDVVI 110 +DV GS + A V + + + +E + R L IN Sbjct: 61 MSDVIFSGSTARKAVNMAEVTLVFDNSRHIMNVEFEEVEVTRRLHRTSGEGEYFINKAPC 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159 R + ++ + + L I S +RR + V R + Sbjct: 121 R-LKDIVNLVMDTGLGRDSLSIISQGNISAFADAKPEDRRALFEEAAGVAKYKKRKNESL 179 Query: 160 IDFER--------------LMRGRNRLLTEGYFDSSWCS---SIEAQMAELGVKINIARV 202 R L R N L + + +E + V Sbjct: 180 SKLNRTQDNLSRLEDIIMELERQVNPLKRQAKKAEVYLEKKKQLEVIEVSVLVDEIEKLS 239 Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-------DQSFCALKEEYAKKLFDGR 255 E I+ L + ++ + + + + D+ L+E+YAK + R Sbjct: 240 EQIDMLKKKAFDLDSQKAMHETTIQVEDVKNSELRNEMYQLDREVNKLQEQYAKLSEESR 299 Query: 256 -------KMDSMSRRTL 265 +MD + L Sbjct: 300 MLETRKIEMDEKRKYAL 316 >gi|303389012|ref|XP_003072739.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC 50506] gi|303301881|gb|ADM11379.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC 50506] Length = 1159 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 4/98 (4%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF-RRASY 61 + ++ + + F++YA + + T VG NG GK+NI++A++F L G R + Sbjct: 1 MGLERVEVENFKSYAGFHIIGPFDRFTCIVGPNGSGKSNIMDAVTFCLGIGSKHLRANNI 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99 + G S S +EG ++ + Sbjct: 61 RSLIN-GGSSHASVALHIEGSGERRVFKRRISSEGRSQ 97 >gi|296112502|ref|YP_003626440.1| condensin subunit Smc [Moraxella catarrhalis RH4] gi|295920196|gb|ADG60547.1| condensin subunit Smc [Moraxella catarrhalis RH4] Length = 1208 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L ++ F+++A+ F T VG NG GK+N+++AI ++ + + R + Sbjct: 1 MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60 Query: 61 YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105 +DV G + A VE + I +L + S+R I Sbjct: 61 MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120 Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155 N +R D L + RI M+ R F++ R+ Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178 Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 +R+ D + ++ +++ L + ++ ++ L Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + E+I L + QK I+ +G + K D ++ E L R ++ Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286 >gi|228477669|ref|ZP_04062298.1| chromosome segregation protein SMC [Streptococcus salivarius SK126] gi|228250558|gb|EEK09769.1| chromosome segregation protein SMC [Streptococcus salivarius SK126] Length = 1177 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKSIEMQGFKSFADKTQVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ ++ +G +I++E I+ +R Sbjct: 61 MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIAGAGETIRVERHIYRNGDNDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ ERR + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNAKPEERRAIFE 162 >gi|145350307|ref|XP_001419553.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579785|gb|ABO97846.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 1209 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 2/105 (1%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYA 62 + IK + + F+ Y + FD VG NG GK+N+ AI LS G RA Sbjct: 1 MHIKQVIVEGFKTYREQTVVDFDDGLNCIVGANGSGKSNLFHAIRFVLSDVFGNLRAEER 60 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 A VE + AD + +E + R R + + Sbjct: 61 QRLLHEGAGHAVMSAYVEIVFDNADGRLPVEREEVRLRRNIGLKK 105 Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 65/213 (30%), Gaps = 28/213 (13%) Query: 157 RRMIDFERLM-RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM-- 213 + +L+ + N+L G+ + Q E ++ R E+ A S+ Sbjct: 949 ESLKSLHKLLSKTNNQLSKLGHVNKKALDQY-QQFTEQREELEKRRSEINKAFDSITQLI 1007 Query: 214 ---EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-SMSRRTLIGPH 269 ++ + E ++ F + + E + D P Sbjct: 1008 DHLDHKKDEAIERTFKQVSMNFKDVFHRLVPGGRGELVMQRKRAANRDPEEEGEPAANPT 1067 Query: 270 RSDLIVDYCDKAITIAHG----------STGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 Y I ++ G S G++ VV V + A P L Sbjct: 1068 T--FSEKYSGVKIKVSFGQGETMQMKQLSGGQKTVVAVALIFA-----IQRCDPMPFYLF 1120 Query: 320 DEISAHLDEDKRNALFRIV---TDIGSQIFMTG 349 DEI A LD R A+ +V + +Q T Sbjct: 1121 DEIDAALDPQYRTAVAHMVKGQANNKTQFIATT 1153 >gi|125573018|gb|EAZ14533.1| hypothetical protein OsJ_04455 [Oryza sativa Japonica Group] Length = 1120 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA +V FD G NG GK+NIL++I F ++ R R A Sbjct: 1 MHIKEICLEGFKSYAGRTVVSGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S ++ + G + G E +I++ + + L IN Sbjct: 61 SLQELVYKQGQAGVTKATVSIVFDNSDRSRSPLGYEDSPEITVTRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + + + V + + Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQG 148 >gi|219112113|ref|XP_002177808.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410693|gb|EEC50622.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1237 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 62/411 (15%), Positives = 139/411 (33%), Gaps = 75/411 (18%) Query: 5 IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61 + + L + F++YA L + T +G NG GK+N+++A+SF+ + R Sbjct: 1 MPVTSLELENFKSYAGLQTIGPFRDFTSVIGPNGAGKSNLMDAVSFVLGVQSRDLRSTVL 60 Query: 62 ADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDD-RSVRCLQINDV 108 AD+ + A + + + + R V ++ Sbjct: 61 ADLVFRPPTTIGTTVSTTSTTPALRASATLVYADAVTGAETRFGRTIGVRGVGEYHLDGK 120 Query: 109 VIRVVDE---------LNKHLRISWLVPSMDRIFSGLSME------------------RR 141 V+ D L K ++ + E R+ Sbjct: 121 VVSWTDYEAALADIGVLVKARNFLVFQGDVEALARKSPAELTALVEQIAGSAGLADDYRQ 180 Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201 R D+ + ++ ++ +R +LL E ++ + + A++ ++ + Sbjct: 181 RHADKEQAQQNTVF---LLQQQKTLRAERKLLKEQKTEADRFHQLLTEKADVETELYLWI 237 Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + ++ H + ++ G L + D + A ++ +A+ L +K S + Sbjct: 238 LYHLDR-------------DRHERDAVLGELRDERD-AHRATEQTHAETLQQAKKQASAA 283 Query: 262 RR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320 RR T R + D+ +T E K + LA Sbjct: 284 RRETGQRQQRRVELAALADRLEPAVIQTTEEIKS--LANKLAQDE--KQVAKKQT----- 334 Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371 E H ++ +A+ + + D +Q +T ++ D + A ++++ Q Sbjct: 335 EADTH--RERIDAIAKEIADYRTQ--LTALERDY-DEIKANAAPVQLTPEQ 380 >gi|224004996|ref|XP_002296149.1| smc1 [Thalassiosira pseudonana CCMP1335] gi|209586181|gb|ACI64866.1| smc1 [Thalassiosira pseudonana CCMP1335] Length = 1241 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61 + + +L + F++YA + R+ T +G NG GK+N+++AISF+ + R + Sbjct: 5 MPVTYLELENFKSYAGTQRIGPFFNFTCVIGPNGSGKSNLMDAISFILGVQSRDLRSSQM 64 Query: 62 ADVT 65 D+ Sbjct: 65 KDLI 68 >gi|166366712|ref|YP_001658985.1| ATPase [Microcystis aeruginosa NIES-843] gi|166089085|dbj|BAG03793.1| ATPase [Microcystis aeruginosa NIES-843] Length = 426 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 29/46 (63%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 ++IK + + +R SL + F Q +F+G NG GK+ IL++++ + Sbjct: 1 MRIKSIKLDNYRGVVSLNIDFHRQLNVFIGVNGAGKSTILDSLAIM 46 >gi|66769073|ref|YP_243835.1| recombination protein N [Xanthomonas campestris pv. campestris str. 8004] gi|66574405|gb|AAY49815.1| recombination protein N [Xanthomonas campestris pv. campestris str. 8004] Length = 554 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 38/278 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F + L F T+ G+ G GK+ +++A+ FLS R + + V R Sbjct: 2 LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56 Query: 67 IGSPSF-----FSTFAR--------VEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111 G+ F A ++ A ++ R D R IN + Sbjct: 57 HGADRAELSAEFQLPAEHPGLTWLADNELDDDAQCQLRRIIRADGGSRA-WINGRPVTSS 115 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168 + +L L + + S LD R + R+ ++ L+ Sbjct: 116 QLSDLAARLVEIHGQHEHQALMARNSQL--ALLDAYARNSAQREQV-RQASQRWQALLDE 172 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHI 224 R+ L +G S +E Q+AEL R ++ I AL + Sbjct: 173 RDALSAQGDV-SDRIGFLEHQLAEL------EREDLDPAAIAALDTNHRRQAHATALIGA 225 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 S+ L+G S L ++ L + + Sbjct: 226 CESVVQQLNGDEGPSALGLLQDSRHDLARVAEHEPRLG 263 >gi|332976664|gb|EGK13504.1| DNA repair protein RecN [Psychrobacter sp. 1501(2011)] Length = 587 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 41/221 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + F L F + G+ G GK+ +L+A+S GR + + R Sbjct: 2 LTSLTLQNFALINHHELSFYDGFNVITGETGAGKSLLLDALSLCIGGR-----ADTSMVR 56 Query: 67 IGSP-----------------------------SFFSTFARVEGMEGLADISIKLETRDD 97 G + S + E D+ I+ + + Sbjct: 57 HGKDNADIYAQFEFSVNNYSAGDAAKEQTDNTVAAVSQWFADHEREFEGDVLIRRQLSSN 116 Query: 98 RSVRCLQINDVVIRV--VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDP 153 + +N V + + + EL L + + +LD + ++ Sbjct: 117 GRSKA-WLNGVPVSLTELKELGAMLVNIHSQHAQQALLK--PAFVVEWLDSIAGLQSLAN 173 Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 + +++L R + + + + +Q+A++ Sbjct: 174 DTEQAYKAYQKLKRQAAEIAAKEAHRNDRIQLLNSQLADIS 214 >gi|326568009|gb|EGE18101.1| condensin subunit Smc [Moraxella catarrhalis BC7] Length = 1202 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L ++ F+++A+ F T VG NG GK+N+++AI ++ + + R + Sbjct: 1 MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60 Query: 61 YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105 +DV G + A VE + I +L + S+R I Sbjct: 61 MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120 Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155 N +R D L + RI M+ R F++ R+ Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178 Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 +R+ D + ++ +++ L + ++ ++ L Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + E+I L + QK I+ +G + K D ++ E L R ++ Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286 >gi|270290378|ref|ZP_06196603.1| DNA repair protein RecN [Pediococcus acidilactici 7_4] gi|270281159|gb|EFA26992.1| DNA repair protein RecN [Pediococcus acidilactici 7_4] Length = 559 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 22/221 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62 + L+I +F L F T+ G+ G GK+ I++A+ L+ GRG R + Sbjct: 2 LLELSIKDFAIIEKLDASFRQGMTVLTGETGAGKSIIIDAVGLLAGGRGSVDFVRTGADK 61 Query: 63 DVTR--IGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDEL 116 V + +T +E G+E D+ I E ++N ++ + ++ Sbjct: 62 AVLQGVFDIAEIANTKTVLEELGIEPTNDLVITREL-LKTGRSVCRVNGTIVNLNSLKKI 120 Query: 117 NKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174 + L + R +F V R++ + +L R N+ L Sbjct: 121 GQTLIDIHGQNEHQELMDSDKHLRLLEQFDYAAVADTKQRYQAAFKAYTKLNRRLNQSLK 180 Query: 175 EGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 + + ++ Q+ E+ ++ R +++N Sbjct: 181 NEHEWNQRVDMLQFQVDEIKAANLIEGEDEELEKRRDQLVN 221 >gi|229823203|ref|ZP_04449272.1| hypothetical protein GCWU000282_00501 [Catonella morbi ATCC 51271] gi|229787369|gb|EEP23483.1| hypothetical protein GCWU000282_00501 [Catonella morbi ATCC 51271] Length = 580 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 90/262 (34%), Gaps = 26/262 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ LNI F + L + T+ G+ G GK+ I++A+S L RG D+ R Sbjct: 2 LRSLNIENFAIIDHVTLDLEMGMTVLAGETGAGKSIIIDALSLLMGSRG-----TNDLIR 56 Query: 67 IGSPSFFSTFARVEG------MEGLADISIKLETRDDRSVRC---------LQINDV--V 109 G+ + LAD ++LE ++D +R +++N Sbjct: 57 QGADKLVVEGLFSMSPAPAPLLAQLADFGLELEDQEDLIIRRELNRQGKNTVRVNGQLAN 116 Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 + ++ ++ +L + + + +F + + ++ +++L + Sbjct: 117 VSLLKQIGYYLVDIHGQNEHQALLNKQFHLSQLDQFAGDRLNQLKQTYQIAFERYDQLRK 176 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227 EG S +E Q+ EL +A + L + + Sbjct: 177 DWLASQQEGTDKRQRLSFLEFQLQELEAANLVAGE--MAQLEQESRRLQNSQKIGQALAT 234 Query: 228 LTGFLDGKFDQSFCALKEEYAK 249 + L + L + A Sbjct: 235 VNYLLSEADTSALTQLSQAQAA 256 >gi|22536888|ref|NP_687739.1| chromosome segregation SMC protein [Streptococcus agalactiae 2603V/R] gi|25010801|ref|NP_735196.1| hypothetical protein gbs0746 [Streptococcus agalactiae NEM316] gi|76787222|ref|YP_329472.1| chromosome segregation protein SMC [Streptococcus agalactiae A909] gi|22533738|gb|AAM99611.1|AE014224_14 chromosome segregation SMC protein [Streptococcus agalactiae 2603V/R] gi|23095155|emb|CAD46390.1| Unknown [Streptococcus agalactiae NEM316] gi|76562279|gb|ABA44863.1| chromosome segregation protein SMC [Streptococcus agalactiae A909] Length = 1179 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEMQGFKSFADKTKVEFDQGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ ++ + + +++E R I+ +R Sbjct: 61 MPDVIFAGTENRKPLNYAQVSVTLDNSDHFIENIADEVRVERRIFRNGDSEYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ ERR + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFE 162 >gi|326941955|gb|AEA17851.1| dihydrolipoamide dehydrogenase [Bacillus thuringiensis serovar chinensis CT-43] Length = 176 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 41/186 (22%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F +L + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 2 LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107 G+ A +EG+ E ++ I++E ++N Sbjct: 57 YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159 ++ ++ E+ K L + + ER F+ DR+V +D ++ Sbjct: 112 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 167 Query: 160 IDFERL 165 D+E+L Sbjct: 168 ADYEKL 173 >gi|326570688|gb|EGE20722.1| condensin subunit Smc [Moraxella catarrhalis BC1] Length = 1202 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L ++ F+++A+ F T VG NG GK+N+++AI ++ + + R + Sbjct: 1 MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60 Query: 61 YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105 +DV G + A VE + I +L + S+R I Sbjct: 61 MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120 Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155 N +R D L + RI M+ R F++ R+ Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178 Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 +R+ D + ++ +++ L + ++ ++ L Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + E+I L + QK I+ +G + K D ++ E L R ++ Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286 >gi|220909312|ref|YP_002484623.1| hypothetical protein Cyan7425_3946 [Cyanothece sp. PCC 7425] gi|219865923|gb|ACL46262.1| conserved hypothetical protein [Cyanothece sp. PCC 7425] Length = 356 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 24/44 (54%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +K L I FR + S L Q + VG N GKT+ILEAI + Sbjct: 2 LKNLKIENFRCFKSFELKELGQLNLLVGKNNSGKTSILEAIQLI 45 >gi|307150934|ref|YP_003886318.1| ATP-dependent endonuclease of the OLD family-like protein [Cyanothece sp. PCC 7822] gi|306981162|gb|ADN13043.1| ATP-dependent endonuclease of the OLD family-like protein [Cyanothece sp. PCC 7822] Length = 576 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +KI L I +RN + L+F +G+N +GK+N+L+ ++ L Sbjct: 1 MKIINLKIQNYRNLDGVELIFHPDINFIIGENNLGKSNLLKLLNIL 46 >gi|15240835|ref|NP_196383.1| structural maintenance of chromosomes (SMC) family protein [Arabidopsis thaliana] gi|9759587|dbj|BAB11444.1| SMC-like protein [Arabidopsis thaliana] gi|332003807|gb|AED91190.1| structural maintenance of chromosomes 6A [Arabidopsis thaliana] Length = 1058 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 83/271 (30%), Gaps = 35/271 (12%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62 KI + + F +++L + F G NG GK+ IL A+ R R A+ Sbjct: 22 KILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATLK 81 Query: 63 DVTRIGSPSFFSTFARVEGM----------------EGLADISIKLETRDDRSVRCLQIN 106 D + G S+ + ++ E S L D R + Sbjct: 82 DFIKTGC-SYALVYVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQGRKISSR 140 Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 +R EL +H I P + R FL + + L+ Sbjct: 141 KEELR---ELVEHYNIDVENPC----VIMSQDKSREFLHSGNDKDKFKFFYKAT----LL 189 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 + + +L + +++ +M + I IN L I E L Sbjct: 190 QQVDDILQSIGTKLNSANALLDEMEKTIKPIEKE----INELLEKIKNMEHVEEITQQVL 245 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 L L + +E +K+ ++ Sbjct: 246 HLKKKLAWSWVYDVDRQLKEQNEKIVKFKER 276 >gi|218246306|ref|YP_002371677.1| chromosome segregation protein SMC [Cyanothece sp. PCC 8801] gi|218166784|gb|ACK65521.1| chromosome segregation protein SMC [Cyanothece sp. PCC 8801] Length = 1226 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 11/97 (11%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + +S F+++ + + F T+ G NG GK+NIL+A+ F L+ +G R Sbjct: 2 VHIKRIELSHFKSFGGTTSIPFLTGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61 Query: 61 YADVTRIG-------SPSFFSTFARVEGMEGLADISI 90 D+ + S V +E L + S+ Sbjct: 62 LPDLVNHNHSNNRKTQEASVSVTFDVSDLEDLQEFSL 98 >gi|153868967|ref|ZP_01998681.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152074461|gb|EDN71313.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 159 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 IK++ + + FR + L L F + T+ +G+NG GKT IL+ ++ L Sbjct: 10 QPEIKVRKIILENFRGFEQLELEFQSDLTVLIGENGAGKTTILDGLAKL 58 >gi|21230926|ref|NP_636843.1| recombination protein N [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21112540|gb|AAM40767.1| recombination protein N [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 554 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 38/278 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F + L F T+ G+ G GK+ +++A+ FLS R + + V R Sbjct: 2 LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56 Query: 67 IGSPSF-----FSTFAR--------VEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111 G+ F A ++ A ++ R D R IN + Sbjct: 57 HGADRAELSAEFQLPAEHPGLTWLADNELDDDAQCQLRRIIRADGGSRA-WINGRPVTSS 115 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168 + +L L + + S LD R + R+ ++ L+ Sbjct: 116 QLSDLAARLVEIHGQHEHQALMARNSQL--ALLDAYARNSAQREQV-RQASQRWQALLDE 172 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHI 224 R+ L +G S +E Q+AEL R ++ I AL + Sbjct: 173 RDALSAQGDV-SDRIGFLEHQLAEL------EREDLDPAAIAALDTNHRRQAHATALIGA 225 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 S+ L+G S L ++ L + + Sbjct: 226 CESVVQQLNGDEGPSALGLLQDSRHDLARVAEHEPRLG 263 >gi|326573074|gb|EGE23047.1| condensin subunit Smc [Moraxella catarrhalis CO72] Length = 1208 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L ++ F+++A+ F T VG NG GK+N+++AI ++ + + R + Sbjct: 1 MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60 Query: 61 YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105 +DV G + A VE + I +L + S+R I Sbjct: 61 MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120 Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155 N +R D L + RI M+ R F++ R+ Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178 Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 +R+ D + ++ +++ L + ++ ++ L Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + E+I L + QK I+ +G + K D ++ E L R ++ Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286 >gi|301066652|ref|YP_003788675.1| chromosome segregation ATPase [Lactobacillus casei str. Zhang] gi|300439059|gb|ADK18825.1| Chromosome segregation ATPase [Lactobacillus casei str. Zhang] Length = 1184 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L I+ F+++A + F + T VG NG GK+NI EAI + + R Sbjct: 1 MQLKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60 Query: 61 YADVTRIGSP 70 DV G+ Sbjct: 61 MGDVIFAGTD 70 >gi|257094259|ref|YP_003167900.1| ATPase-like protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046783|gb|ACV35971.1| ATPase-like protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 397 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 19/103 (18%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI------------SFLSP 52 + IK + I F++ + +V T+ +G+NG GK+++LEA+ + + Sbjct: 1 MHIKSIAIENFKSLKNSGVVRMKPLTVLIGNNGSGKSSLLEAVETYRQVVLEGVDAAMEH 60 Query: 53 GRGFRRASYADVTRI-GSPSFFSTFARVEGMEGLADISIKLET 94 +GF + R G+ S +T ARV+ +S KL+ Sbjct: 61 WQGF------EHIRHKGAVSRLTTAARVDPTRQHGAMSFKLKL 97 >gi|56698060|ref|YP_168431.1| SMC protein [Ruegeria pomeroyi DSS-3] gi|56679797|gb|AAV96463.1| SMC protein [Ruegeria pomeroyi DSS-3] Length = 1151 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 118/341 (34%), Gaps = 41/341 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 ++ L ++ F+++ L+ T VG NG GK+N+LEA+ ++ + R Sbjct: 1 MRFNRLKLTGFKSFVDPTDLIIADGLTGIVGPNGCGKSNLLEALRWVMGENRPKAMRGGG 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108 DV G+ S F ++ E LA +++ R R V + N Sbjct: 61 MEDVIFAGASSRPARNFAEVTLLMDNSERLAPSGFNDADQLEIVRRITRDVGSAYKANGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR-----MVFAIDPRH 155 +R D L P++ R + + RRR L+ ++ Sbjct: 121 DVRARDVQILFADASTGAHSPALVRQGQIAELINAKPTSRRRILEEAAGISGLYQRRHEA 180 Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---GVKINIARVEMINALSSLI 212 ++ E + + +L + + + Q A G ++ +A +++ Sbjct: 181 ELKLKGTETNLTRVDDVLEQLGTQLAQLARQARQAARYREIGEQLRLAEGQLLYRRWRDA 240 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 E K +L + AL+ E L R+ ++++ L H Sbjct: 241 DEARAKAEEVLRHRTLDASRAEAAARQAEALRNETEAALPALREEEAIAGAVLQRMHVQR 300 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA-RLISNTTG 312 ++ ++ Q++ ++ +A R I TG Sbjct: 301 DTLNDQEQRAR--------QQIEVLTARIAQLGRDIERETG 333 >gi|256847359|ref|ZP_05552805.1| chromosome segregation protein SMC [Lactobacillus coleohominis 101-4-CHN] gi|256716023|gb|EEU30998.1| chromosome segregation protein SMC [Lactobacillus coleohominis 101-4-CHN] Length = 1189 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 23/163 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++ + I F+++A + F T +G NG GK+N++EA+ ++ + R Sbjct: 1 MQLVSMEIDGFKSFAHKTTIKFQPGMTGIIGPNGSGKSNVIEALRWVMGEQSAKTLRGGK 60 Query: 61 YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS A V+ +D ++ + + R L IND +R Sbjct: 61 MVDVIFNGSKDHHPLNRAVVKMTLDNSDHYLQSQYSEITVTRKLYRNGDSEYLINDHRVR 120 Query: 112 VVDELNKHLRISWLVPSMD---------RIFSGLSMERRRFLD 145 + ++ S + IF+G +RRR ++ Sbjct: 121 -LKDIVDLFINSGIGRESFSIISQGRVAEIFNGQPSDRRRIIE 162 >gi|255725234|ref|XP_002547546.1| structural maintenance of chromosome 2 [Candida tropicalis MYA-3404] gi|240135437|gb|EER34991.1| structural maintenance of chromosome 2 [Candida tropicalis MYA-3404] Length = 1171 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K++ L I F++YA+ + +D+Q G NG GK+NIL+AI F+ R + Sbjct: 1 MKVEELIIDGFKSYAARTVISGWDSQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E IS+ + + + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFNNSEVSKSPIGFENCPTISVTRQIILGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + LN + + + + + Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148 >gi|255532740|ref|YP_003093112.1| SMC domain-containing protein [Pedobacter heparinus DSM 2366] gi|255345724|gb|ACU05050.1| SMC domain protein [Pedobacter heparinus DSM 2366] Length = 423 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 +K + I F++ L + + +F+G+NG GKT+ILEAI Sbjct: 2 LKSIKIKNFKSVQDLEIELG-RVNVFIGENGCGKTSILEAIGM 43 >gi|255282234|ref|ZP_05346789.1| putative RecF/RecN/SMC N domain protein [Bryantella formatexigens DSM 14469] gi|255267182|gb|EET60387.1| putative RecF/RecN/SMC N domain protein [Bryantella formatexigens DSM 14469] Length = 429 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 56/397 (14%), Positives = 117/397 (29%), Gaps = 58/397 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62 +KI L I + ++++ TI G+NG GKT++L++I++ G +R + Sbjct: 1 MKINQLEIENVKRIKAVKVEPALNGLTIIGGNNGQGKTSVLDSITWALGGDRYRPSRAQR 60 Query: 63 ------DVTRIGSPSFFSTF---------------------------------------- 76 RI + Sbjct: 61 DGSVIHPYIRITMDNGLVVERKGKNSDLKVTDPSGKKAGQQLLNEFIEQLALDLPKFMNS 120 Query: 77 ---ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133 + E + L + ++E + + V R+ D+ K+ R P R Sbjct: 121 SGKEKAETLLRLIGVGDQVEALEKKETDLYSDRQAVGRIADQKKKYAREQVFYPDAPREP 180 Query: 134 SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 S RR + + A + ++R+ +++ L + + ++A+ + Sbjct: 181 VSPSELIRR--QQEILARNGENQRKRNALQQMQAQSEELDRKIAGMEEQLADMKAERKRM 238 Query: 194 GVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251 I AR L ++ + N I + LD + E +L Sbjct: 239 ASDIEDARKSA-EELQDESTAELEADLANIEEINRKVRANLDKDKAEEDARYYERQYNEL 297 Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 + L+ L + + +G + + ++ A I Sbjct: 298 TGQITEVRERKNALLDQAELPLPGLSVNDRELVYNGQRWDNMSGADQLKVSTA--IVRKL 355 Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348 +L + +D +T G Q+ T Sbjct: 356 NPKCGFVLMDKLEQMDPSTLEEFGEWLTKEGLQVIAT 392 >gi|116495088|ref|YP_806822.1| chromosome segregation ATPase [Lactobacillus casei ATCC 334] gi|191638592|ref|YP_001987758.1| Chromosome seggregation Smc protein [Lactobacillus casei BL23] gi|227534897|ref|ZP_03964946.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105238|gb|ABJ70380.1| condensin subunit Smc [Lactobacillus casei ATCC 334] gi|190712894|emb|CAQ66900.1| Chromosome seggregation Smc protein [Lactobacillus casei BL23] gi|227187653|gb|EEI67720.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327382634|gb|AEA54110.1| chromosome segregation protein SMC [Lactobacillus casei LC2W] gi|327385828|gb|AEA57302.1| chromosome segregation protein SMC [Lactobacillus casei BD-II] Length = 1184 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L I+ F+++A + F + T VG NG GK+NI EAI + + R Sbjct: 1 MQLKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60 Query: 61 YADVTRIGSP 70 DV G+ Sbjct: 61 MGDVIFAGTD 70 >gi|327461657|gb|EGF07988.1| DNA repair protein RecN [Streptococcus sanguinis SK1] Length = 552 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P +G E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQLVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----AIDPRHRRRMIDFERLMRGR 169 + + D+ S LD + R++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRSQLHIAMLDEFGSADFLHLKGRYQETFDRYRSLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L + +E QMAE+ ++ R ++N Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221 >gi|327310411|ref|YP_004337308.1| SMC domain-containing protein [Thermoproteus uzoniensis 768-20] gi|326946890|gb|AEA11996.1| SMC domain protein [Thermoproteus uzoniensis 768-20] Length = 799 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 96/270 (35%), Gaps = 49/270 (18%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRAS 60 +I + + +F+ Y T VG G GK+++L+A+ F G+ R A Sbjct: 3 RIARIKLRDFKVYEGEYEFKLSP-VTAIVGRVGAGKSSLLQAVEFALFGKELEVRQRIAR 61 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVI------RVV 113 AD+ + S S +E +G ++ R RS L+++D R + Sbjct: 62 LADLINLNSDSAL---VELELTDGSRKALVRRSVGRGGRSRLELRLDDHKYTDEDAERTL 118 Query: 114 DELNK-----HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 EL + R+ ++ F +R L + ID + + ++++ Sbjct: 119 AELTGITSDDYDRVIYVSHYALEDFIHGDRLKRTSLIDKILQID-----ILDNTQKII-- 171 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE--MINALSSLIMEYVQKENFPHIKL 226 N +L + +I R++ +I +Y +K Sbjct: 172 -NNILKN-----------------IMEEIEKIRIKISYYEKYRDIIEKYGGLSKLKEVKA 213 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 SL L+G + L Y + L + R+ Sbjct: 214 SLERELEG-LTRREADLSSRYRELLEERRR 242 Score = 40.3 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 81/245 (33%), Gaps = 38/245 (15%) Query: 157 RRMIDFERLMRGRNRLL---------TEGYFDSSWCSSIEAQMAELGVKINIARVEM--- 204 + + + +R R + + E + + +++ R Sbjct: 537 EVVRRYNKALRVRQLREELEGLERELKNLGLSGAALEA-EEEFRRISDELDRTRRRKADI 595 Query: 205 ---INALSSLIMEYVQKENFPHIKLS---LTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258 + LS ++ ++ + KL + LK ++ + + Sbjct: 596 YDELRRLSEVLANVDEELDSLKSKLEKYMYSYNRFSNIINKIDILKYNVRSRIIKEIEDE 655 Query: 259 SMSRRTLIGPHRS--DLIVDYCDKA------------ITIAHGSTGEQKVVLVGIFLAHA 304 + I P+R L + DK + I+ S G++ + + ++ Sbjct: 656 LWRNFSKIYPYRDIESLRLTLRDKGYEVEARLADGNVVGISKLSDGQRLAAALSLVISMR 715 Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETA 362 RL+ G LLLD+ ++D + R++L ++ + S QI + + + Sbjct: 716 RLLGPKLG---FLLLDDPLPYVDPNVRSSLAGLIASLSSEYQIVVATQTGDLPREIAANG 772 Query: 363 KFMRI 367 +R+ Sbjct: 773 VDVRV 777 >gi|225871678|ref|YP_002753036.1| RecF/RecN/SMC N domain protein [Bacillus cereus 03BB102] gi|225785565|gb|ACO25783.1| RecF/RecN/SMC N domain protein [Bacillus cereus 03BB102] Length = 688 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 + I L + FR + + F + VG N GKT I++A+ L Sbjct: 1 MYISRLTLKNFRTFKNETTVQFHEGTNVIVGHNNAGKTTIIKALELL 47 >gi|326561539|gb|EGE11882.1| condensin subunit Smc [Moraxella catarrhalis 7169] gi|326564821|gb|EGE15029.1| condensin subunit Smc [Moraxella catarrhalis 12P80B1] gi|326566503|gb|EGE16650.1| condensin subunit Smc [Moraxella catarrhalis 103P14B1] gi|326571244|gb|EGE21267.1| condensin subunit Smc [Moraxella catarrhalis BC8] gi|326577228|gb|EGE27121.1| condensin subunit Smc [Moraxella catarrhalis 101P30B1] Length = 1208 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K L ++ F+++A+ F T VG NG GK+N+++AI ++ + + R + Sbjct: 1 MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60 Query: 61 YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105 +DV G + A VE + I +L + S+R I Sbjct: 61 MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120 Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155 N +R D L + RI M+ R F++ R+ Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178 Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 +R+ D + ++ +++ L + ++ ++ L Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 + E+I L + QK I+ +G + K D ++ E L R ++ Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286 >gi|315426347|dbj|BAJ47987.1| exonuclease SbcC [Candidatus Caldiarchaeum subterraneum] Length = 758 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 25/195 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 I+ + + F ++ + T+F+G NG GK+++++AI + GR R A++ Sbjct: 2 IRRVRLFNFLSHRDTEISLGDGLTVFIGRNGAGKSSVVDAIVYALYGR-HTRGQNANIVH 60 Query: 67 IGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116 G +V + R+D + V RV D + Sbjct: 61 DGGGAQEGRVELDFELNRKLYKVMRRFDNKGNLKEASIREDGKLLATSERGVDRRVSDIV 120 Query: 117 NKHL---------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM- 166 + L + +D I E + D ++ + + ++ Sbjct: 121 SGLLGMNYERMRSSVVIQQGEVDAILRADPKELKELFDDLLGL--SAFEQAYARMKEVLE 178 Query: 167 --RGRNRLLTEGYFD 179 R RL+ D Sbjct: 179 CFEERVRLMVRRSVD 193 Score = 53.8 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 56/309 (18%), Positives = 113/309 (36%), Gaps = 28/309 (9%) Query: 78 RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137 V G G+A + +LE +R+ + ++ + V EL + L + + S + Sbjct: 451 EVGGEPGVAALKARLEGLRERAAKLEKVKVPIELDVAELQGVAEV--LPADVAELLSRIR 508 Query: 138 MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197 +R D ++ ERL +++L E + M + +I Sbjct: 509 TGIKRLRDDGYS------AGDVVQLERLKLRKDKLSREIGSKEKELEKLREDMQKAEKEI 562 Query: 198 --------NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 + + L + E V P + +SL ++ + + + + Sbjct: 563 GELERVREVLRKAREFRDLMRKMRELVYHREGPVL-MSLRSWVYERVSERAGEYLDTFES 621 Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309 + D R + + R R Y + ++ S GE+ V+ + + LA + Sbjct: 622 PVSDIRIEEERTGRGSRVVFRC----FYQGREVSWERLSGGEKVVLALALRLAIGDALGA 677 Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIG---SQIFMTGTDKSVFDSLNETAKFMR 366 +LDE + HLD +KR L ++T +G Q+ + D+ VF+ A+ +R Sbjct: 678 Q--RLGFFVLDEPTVHLDAEKRRRLREVLTRLGRKMPQVIVITHDEEVFE--GAEARVLR 733 Query: 367 ISNHQALCI 375 + I Sbjct: 734 FELGRGATI 742 >gi|78187531|ref|YP_375574.1| chromosome segregation protein SMC [Chlorobium luteolum DSM 273] gi|78167433|gb|ABB24531.1| Chromosome segregation protein SMC [Chlorobium luteolum DSM 273] Length = 1177 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 70/203 (34%), Gaps = 30/203 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60 + + + I F+++A +R+ FD T VG NG GKTN+++AI L + R A Sbjct: 1 MYLSKIEIFGFKSFAHRVRISFDKGLTAIVGPNGCGKTNVVDAIRWVLGEQKSSLLRSAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 ++ GS SF +E + T R R +N V R Sbjct: 61 MENIIFNGSKNLKPLSFTEVSLTIENTRNVLPTEYTEVTITRRIYRNGESGFLLNQVPCR 120 Query: 112 VVDELNKHLRISWLVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L+ + I S S ER + + + ++ Sbjct: 121 LKDILDLFTDTGMGSDAYSVIELKMIEEIISNKSEERMKLFEE---------AAGITRYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSI 186 + + R L D S + Sbjct: 172 QRRKQTFRQLESASRDLSRVDDL 194 >gi|82593920|ref|XP_725208.1| chromosome-associated polypeptide [Plasmodium yoelii yoelii str. 17XNL] gi|23480124|gb|EAA16773.1| chromosome-associated polypeptide, putative [Plasmodium yoelii yoelii] Length = 971 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL 50 + IK + + FR Y + + F VG NG GK+NIL AI F+ Sbjct: 1 MYIKQIKLKGFRTYKNETVIEFTKGINCIVGFNGSGKSNILMAIEFI 47 >gi|319744743|gb|EFV97085.1| SMC structural maintenance of chromosomes partitioning protein [Streptococcus agalactiae ATCC 13813] Length = 1179 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEMQGFKSFADKTKVEFDQGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ ++ + + +++E R I+ +R Sbjct: 61 MPDVIFAGTENRKPLNYAQVSVTLDNSDHFIENIADEVRVERRIFRNGDSEYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ ERR + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFE 162 >gi|313633348|gb|EFS00193.1| DNA repair protein RecN [Listeria seeligeri FSL N1-067] gi|313638041|gb|EFS03320.1| DNA repair protein RecN [Listeria seeligeri FSL S4-171] Length = 563 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 23/201 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG D R Sbjct: 2 LQEMTIKNFAIIESLSLSFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----STDFIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G +F A +E D + LE RS + +IN ++ Sbjct: 57 HGEERLELQGLFALAEDNFACRNALLEHGIDATDDMVVLERSLFRSGKNSCRINGKLVTT 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L + + RF + +++ +++ + + Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPALTKYQANFKEYQTISKE 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189 + + Q Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197 >gi|302036230|ref|YP_003796552.1| putative chromosome segregation protein Smc [Candidatus Nitrospira defluvii] gi|300604294|emb|CBK40626.1| putative Chromosome segregation protein Smc [Candidatus Nitrospira defluvii] Length = 1227 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASY 61 + +K L + F+++A ++ F T VG NG GK+N++++I L + R Sbjct: 1 MYLKSLEMLGFKSFAEAKIQFPKGITAIVGPNGSGKSNVVDSILWVLGEQSTKTLRSEKM 60 Query: 62 ADVTRIGSP 70 DV G+ Sbjct: 61 EDVIFNGTE 69 >gi|49481911|gb|AAT66667.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A59] Length = 573 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 51/280 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL + F+ T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSISFEQGLTVLTGETGAGKSIIIDAIYLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G A +EG+ L D + ++ + ++N Sbjct: 57 YGEEK-----AEIEGLFLLNDETHPCYGKCAEVGIDISEGMVVLRREIFATGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161 ++ V+ E+ L + LD + +R Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELM--DPARHLPLLDEFGGAEIAEALAEYRSVYEK 169 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210 +E+L + +L + + Q+ E+ ++ +V+++N + Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYE 229 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247 + + + L G D LKE Y Sbjct: 230 ALKHSYEALSGEQRGLDWIGLAMSHLDDVASIDPELKEAY 269 >gi|49481907|gb|AAT66665.1| DNA repair and genetic recombination protein [Geobacillus caldoxylosilyticus] Length = 573 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 51/280 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL + F+ T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIYLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G A +EG+ L D + ++ + ++N Sbjct: 57 YGEEK-----AEIEGLFLLNDETHPCYGKCAEVGIDISEGMVVXRREIFATGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161 ++ V+ E+ L + LD + +R Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELM--DPARHLPLLDEFGGAEIAEALAEYRSVYEK 169 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210 +E+L + +L + + Q+ E+ ++ +V+++N + Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYE 229 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247 + + + L G D LKE Y Sbjct: 230 ALKHSYEALSGEQRGLDWIGLAMSHLDDVASIDPELKEVY 269 >gi|302872006|ref|YP_003840642.1| chromosome segregation protein SMC [Caldicellulosiruptor obsidiansis OB47] gi|302574865|gb|ADL42656.1| chromosome segregation protein SMC [Caldicellulosiruptor obsidiansis OB47] Length = 1177 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 92/270 (34%), Gaps = 34/270 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 + IK+L I F+++ R+ T VG NG GK+NI +AI + + R A Sbjct: 1 MYIKWLEIYGFKSFCEKTRIELQKGITAIVGPNGCGKSNITDAIRWALGEQSLKILRAAK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ F + G+ I + + R RS IN R Sbjct: 61 QEDLIFAGTEKRKSQGFAEVSICFDNSNGILPIDYQEVVITRRLFRSGESEFFINKTPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + +ER R + ++R+ + E Sbjct: 121 LKDVYELFLDSGLGKDGYSVISQGKVDEIINARPVERYRIFEEACGITKYKYRKE--ETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R ++ ++ M EL ++ + + + + + ++ Sbjct: 179 RKLK----------TTEENIQRLQDVMFELSTQLEEIKPD-VQKAKIYLQINQKLQSLKK 227 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253 K L G+ +++ ++L Sbjct: 228 EKYVYEYNLTGRRYNDLLFKEKQLNEELEK 257 Score = 39.5 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 44/205 (21%) Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALSSLIMEYVQKEN 220 NR + A ++ELG K R++ + + + + Sbjct: 955 NREIFWSKEKEDELERCTAALSELGEVKLYSIDQEKRLQERMQFLQKQIEDLQKTT--DE 1012 Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280 + L + F ++F +K +++ F+ L G DL + D Sbjct: 1013 LKRLISHLEKNMKEIFLENFEKIKSLFSEIFFE-----------LFGGGSCDLKLIGQDG 1061 Query: 281 AI--------------TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326 + I S GE+ +V + + A T + + +LDEI + L Sbjct: 1062 ELGVDIDVKPPGKKLQNINLLSGGEKALVAIALLFAFL-----TFKGSLLCILDEIDSSL 1116 Query: 327 DEDKRNALFRIVTDIGSQ---IFMT 348 DE + + ++ SQ I +T Sbjct: 1117 DEANVQRFAQYIKNLNSQSQIIIVT 1141 >gi|296412047|ref|XP_002835739.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629529|emb|CAZ79896.1| unnamed protein product [Tuber melanosporum] Length = 1122 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 24/222 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ + F + L + F +G NG GK+ IL AI+ G+ R S Sbjct: 107 IQSVTCQNFMCHRWLEIKFGPFVNFVIGHNGSGKSAILTAITLCLGGKAAATNRGTSMKS 166 Query: 64 VTRIGSP-SFFSTFARVEG------MEGLADISIKLETRDDRSVRCLQIND-----VVIR 111 + + G S + + +G G A + + TRD S L+ ND Sbjct: 167 LIKEGEDTSRITVKLKNQGDGFKTEQYGDAILIERNFTRDGSSGYKLKSNDGKAISSKKE 226 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 ++E+ + + P I + S R+FL A + + ++ E+ + Sbjct: 227 ELEEICDYFGLQVDNP--MTILTQDSA--RQFLSSSTNAEKYKFFAKGVNLEQ-LDQDYA 281 Query: 172 LLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSSL 211 L+ G S + + ++A++ K+ + E ++ L S Sbjct: 282 LIKNGI--DSTDAVLHNKLADIDGLKKLMVRANERLDQLKSH 321 >gi|251793335|ref|YP_003008063.1| RecF/RecN/SMC N domain [Aggregatibacter aphrophilus NJ8700] gi|247534730|gb|ACS97976.1| RecF/RecN/SMC N domain, putative [Aggregatibacter aphrophilus NJ8700] Length = 409 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 26/147 (17%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI +L IS F++ ++ + + + G NG GK+N ++A++FLS V Sbjct: 1 MKINYLKISGFKSIQNVEIKDVSSFMVLAGANGTGKSNFVDALAFLSK-----------V 49 Query: 65 TRIGSPSFFSTFARVEGMEGLAD----ISIKLETRDDRSVRCLQI----NDVVIRVVDEL 116 +G S F VE + G IS K+E + V +I N+++ R+ E Sbjct: 50 IDMGVSKAVSEFGGVENLIGPKHNSGNISYKIEFEIEEQVYQYEISIFLNNLISRISSES 109 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRF 143 K L+ +I R + Sbjct: 110 LKILK-------DGQIIFDSDKVREKL 129 >gi|254410361|ref|ZP_05024140.1| DNA repair protein RecN [Microcoleus chthonoplastes PCC 7420] gi|196182567|gb|EDX77552.1| DNA repair protein RecN [Microcoleus chthonoplastes PCC 7420] Length = 589 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 38/216 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYADVT 65 + L I F L L F A + G+ G GK+ IL+AI G+ R + Sbjct: 2 LLSLRIQNFALIDQLELEFAAGLNVLTGETGAGKSIILDAIDVALGGKVTHR------LI 55 Query: 66 RIGSP-SFFSTFARVEGM------EGLADI--------SIKLETRDDRSVRCLQINDVVI 110 R G + R++G E D+ S ++ + + +IN +++ Sbjct: 56 RTGEKRALVEATFRIDGTLMAWLSEQEIDLLDEADLVCSREITAKQNSLRSRSRINGILV 115 Query: 111 --RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--------AIDPRHRRRMI 160 R++++L R+ + + S +RR LD + + Sbjct: 116 NRRLMEQLRD--RLVEITAQGQTVQLFASTRQRRLLDFFGGFPIKQHLDQVTTAYLASQD 173 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 ++ L + R +E Q EL Sbjct: 174 AWQALQKRRQ----SEQQRLQRLDWLEYQTQELSAA 205 >gi|196005895|ref|XP_002112814.1| hypothetical protein TRIADDRAFT_25837 [Trichoplax adhaerens] gi|190584855|gb|EDV24924.1| hypothetical protein TRIADDRAFT_25837 [Trichoplax adhaerens] Length = 320 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 7/126 (5%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63 + L I F++Y + + T +G NG GK+N+++AI F+ + R S + Sbjct: 4 LTQLEIENFKSYKGKQIIGPFKRFTAIIGPNGSGKSNLMDAICFVLGEKTSNLRVRSVKN 63 Query: 64 VTRIGSPSF--FSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 + G+P S A+V + D I+ S +IN+ VI + + L Sbjct: 64 LI-HGAPIHKPVSNKAQVTAVYTEEDETEIRFTRCIVGSGTEYRINNKVIDKTIQYQEKL 122 Query: 121 RISWLV 126 + Sbjct: 123 ENLGIS 128 >gi|239631966|ref|ZP_04674997.1| chromosome segregation ATPase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526431|gb|EEQ65432.1| chromosome segregation ATPase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 1184 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L I+ F+++A + F + T VG NG GK+NI EAI + + R Sbjct: 1 MQLKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60 Query: 61 YADVTRIGSP 70 DV G+ Sbjct: 61 MGDVIFAGTD 70 >gi|127139521|ref|NP_955836.2| structural maintenance of chromosomes 2 [Danio rerio] gi|220678594|emb|CAX14295.1| novel protein similar to fibroblast growth factor receptor 4 (FGFR4, zgc:55326) [Danio rerio] Length = 1199 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 42/286 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++Y + FD G NG GK+NIL++I FL S R Sbjct: 1 MYIKSIVLEGFKSYAERTEINGFDPFFNAITGLNGSGKSNILDSICFLLGISNLSQVRAT 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I+I + + L IN Sbjct: 61 NLQDLVYKNGLAGITKATVSITFDNSNKKQSPLGFETHDEITITRQVVIGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 V + + + V + + + + L+ ++ I+ RM + + Sbjct: 120 VNANNLRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 ++ + + ++ ++ K+ R + QK Sbjct: 178 KISAQKTIEKKDAKLKEIQT-ILDEEITPAMEKLKEERASYLE---------YQKLMREI 227 Query: 224 IKLS--LTGFLDGKFDQSFCALKEEYAK------KLFDGRKMDSMS 261 LS +L +++ EE + KL + K + Sbjct: 228 EHLSRLYVAYLFVCAEETKLKSNEELQEMQSSIAKLQENMKQNEAK 273 >gi|68469234|ref|XP_721404.1| potential nuclear DNA repair complex SMC ATPase [Candida albicans SC5314] gi|68470259|ref|XP_720891.1| potential nuclear DNA repair complex SMC ATPase [Candida albicans SC5314] gi|77022674|ref|XP_888781.1| hypothetical protein CaO19_6568 [Candida albicans SC5314] gi|46442783|gb|EAL02070.1| potential nuclear DNA repair complex SMC ATPase [Candida albicans SC5314] gi|46443321|gb|EAL02604.1| potential nuclear DNA repair complex SMC ATPase [Candida albicans SC5314] gi|76573594|dbj|BAE44678.1| hypothetical protein [Candida albicans] Length = 1128 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 4/104 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ L + F + S L Q +G NG GK+ IL IS + R ++ D Sbjct: 106 IEKLTLKNFMCHDSFELKLGPQLNFIIGRNGSGKSAILTGISVGLGAKATDTNRGSTIRD 165 Query: 64 VTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 + + G S S + + EG + + +R ++ N Sbjct: 166 LIKDGKSTSRITVVLKNEGSDAYKPDVFGKKIIIERKLQRSGSN 209 >gi|307276680|ref|ZP_07557798.1| segregation protein SMC [Enterococcus faecalis TX2134] gi|306506790|gb|EFM75942.1| segregation protein SMC [Enterococcus faecalis TX2134] Length = 1192 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNNDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|257126140|ref|YP_003164254.1| SMC domain protein [Leptotrichia buccalis C-1013-b] gi|257050079|gb|ACV39263.1| SMC domain protein [Leptotrichia buccalis C-1013-b] Length = 1209 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 13/123 (10%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 + +K L ++ F+++A+ + FD T VG NG GK+NIL+AI ++ + + R Sbjct: 1 MYLKALELTGFKSFANRTVVEFDNGITSIVGPNGSGKSNILDAILWVLGEQSYKNIRAKE 60 Query: 61 YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 +D+ G S ++ + D+ +K+ R IN+ R Sbjct: 61 SSDIIFSGGKNKKPKSMAEVSLIIDNEDRYLDVDFSEVKITRRIFKTGENEYLINNKKSR 120 Query: 112 VVD 114 + D Sbjct: 121 LKD 123 >gi|218189557|gb|EEC71984.1| hypothetical protein OsI_04829 [Oryza sativa Indica Group] Length = 1171 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA +V FD G NG GK+NIL++I F ++ R R A Sbjct: 1 MHIKEICLEGFKSYAGRTVVSGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S ++ + G + G E +I++ + + L IN Sbjct: 61 SLQELVYKQGQAGVTKATVSIVFDNSDRSRSPLGYEDSPEITVTRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + + + V + + Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQG 148 >gi|254423499|ref|ZP_05037217.1| DNA repair protein RecN [Synechococcus sp. PCC 7335] gi|196190988|gb|EDX85952.1| DNA repair protein RecN [Synechococcus sp. PCC 7335] Length = 637 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 92/265 (34%), Gaps = 41/265 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62 + L I F L L + G+ G GK+ IL+AI + + GR R + Sbjct: 2 LVSLKIENFALIDQLELELKPGLNVLTGETGAGKSIILDAIDAVLGGKASGRWVRTGTEK 61 Query: 63 DVTRIGSPSFFSTFARVEG-------MEGLADISIKLE-TRDDRSVR-CLQINDVVIRV- 112 + + F R+ G +G A I+ + + T SVR ++N + ++ Sbjct: 62 ALV----EATFQVDTRLSGWLSEQAIPDGGAIITCRRDLTAGKNSVRSKSRLNGIPVKKP 117 Query: 113 -VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 +D L + L + + G +R +LD +L+ + + Sbjct: 118 QMDALRQLL--IEITAQGQTLQLGDHDLQRDWLDGFGDQ-------------KLLEQKGQ 162 Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 + SS ++A+ + + R E I L E+ + +L Sbjct: 163 VAANYAAASSAKKILDAR-----RQADRQRAEQIEMLQFQNKEFSEAALEDPNELEDLQI 217 Query: 232 LDGKFDQSFCALKEEYA--KKLFDG 254 + S ++ Y + L++ Sbjct: 218 EHQRLSHSVELQQQSYQVYQMLYEN 242 >gi|115441687|ref|NP_001045123.1| Os01g0904400 [Oryza sativa Japonica Group] gi|56784538|dbj|BAD82795.1| SMC2 protein [Oryza sativa Japonica Group] gi|113534654|dbj|BAF07037.1| Os01g0904400 [Oryza sativa Japonica Group] Length = 1175 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA +V FD G NG GK+NIL++I F ++ R R A Sbjct: 1 MHIKEICLEGFKSYAGRTVVSGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S ++ + G + G E +I++ + + L IN Sbjct: 61 SLQELVYKQGQAGVTKATVSIVFDNSDRSRSPLGYEDSPEITVTRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + + + V + + Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQG 148 >gi|47095887|ref|ZP_00233491.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|254900455|ref|ZP_05260379.1| RecF/RecN/SMC N domain protein [Listeria monocytogenes J0161] gi|254913307|ref|ZP_05263319.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937688|ref|ZP_05269385.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|47015764|gb|EAL06693.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|258610288|gb|EEW22896.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293591308|gb|EFF99642.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 690 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 27/51 (52%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 + I + I+ +R++ + + + + +G N GK+N+L+A++ + Sbjct: 1 MYISKVKINNYRSFINTEIDLNEGINVLIGHNNAGKSNLLKALAIVLGSTS 51 >gi|332362903|gb|EGJ40696.1| DNA repair protein RecN [Streptococcus sanguinis SK49] Length = 552 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P +G E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMRGR 169 + + D+ LD A + R++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGSADFLYLKGRYQETFDRYRSLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L + +E QMAE+ ++ R ++N Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221 >gi|307282353|ref|ZP_07562561.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0860] gi|306503801|gb|EFM73027.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0860] Length = 788 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 11/137 (8%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 N+++I + + F++ + F+ + G NG GKT I +AI + G+ R + Sbjct: 5 NKLRINKIYLKNFKHVNEAEINFNNNDLIVLDGPNGFGKTTIFDAIELVMTGKISRITNT 64 Query: 62 ADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 D R+G + FS + ++ ++ I+ E ++R V +I+ + Sbjct: 65 IDR-RLGYEYNLFSNKSEID-----TEVRIEFENNENRIVIAKRIDSERRFTQSDKKPDN 118 Query: 121 RISW---LVPSMDRIFS 134 + L+P IF Sbjct: 119 WNVFQTYLLPEFMSIFE 135 >gi|256958377|ref|ZP_05562548.1| chromosome partition protein SMC [Enterococcus faecalis DS5] gi|257078312|ref|ZP_05572673.1| chromosome partition protein SMC [Enterococcus faecalis JH1] gi|257080501|ref|ZP_05574862.1| chromosome partition protein SMC [Enterococcus faecalis E1Sol] gi|294780224|ref|ZP_06745596.1| chromosome segregation protein SMC [Enterococcus faecalis PC1.1] gi|307270585|ref|ZP_07551883.1| segregation protein SMC [Enterococcus faecalis TX4248] gi|256948873|gb|EEU65505.1| chromosome partition protein SMC [Enterococcus faecalis DS5] gi|256986342|gb|EEU73644.1| chromosome partition protein SMC [Enterococcus faecalis JH1] gi|256988531|gb|EEU75833.1| chromosome partition protein SMC [Enterococcus faecalis E1Sol] gi|294452767|gb|EFG21197.1| chromosome segregation protein SMC [Enterococcus faecalis PC1.1] gi|306513166|gb|EFM81800.1| segregation protein SMC [Enterococcus faecalis TX4248] gi|315034801|gb|EFT46733.1| segregation protein SMC [Enterococcus faecalis TX0027] Length = 1192 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNNDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|269926771|ref|YP_003323394.1| DNA repair protein RecN [Thermobaculum terrenum ATCC BAA-798] gi|269790431|gb|ACZ42572.1| DNA repair protein RecN [Thermobaculum terrenum ATCC BAA-798] Length = 577 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 95/298 (31%), Gaps = 49/298 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62 + L+I +F + + + F F G+ G GK+ I++A+ + GR R + + Sbjct: 2 LAELHIRDFAIISEINISFSPGFNAFTGETGAGKSIIIDALDLVLGGRASPDMVRTGASS 61 Query: 63 DVTRI------GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVD 114 + + G S G++ ++ I E +IN V + ++ Sbjct: 62 SLIQAMFVLEGGVLREVSELLESNGLDPSEELIITREISSSGRS-SARINGSLVPVTLLR 120 Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR---------MVFAIDPRHRRRMIDFERL 165 +L ++L + + + +R LD V + R+ + + L Sbjct: 121 QLGENL--VDITGQSEHLVLLRPSAQRDMLDHYAGAIDLRSEVSQLYNEIRQVQSELDAL 178 Query: 166 MR-GRNRLLTEGYFDSSWCSSIEAQMAEL----GVKINIAR-----VEMINALSSLIM-- 213 + R E D E A+L ++ R E + L+ Sbjct: 179 VSGQREA---ERRADMLRYQIEEISSADLQPGEDEELLKRRNLLANAEKLAQLADNAYQS 235 Query: 214 ----------EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + Q ++ + L L D A+ L R DS+ Sbjct: 236 LYSSSTSAIDQLQQAQSLLEELVRLDNSLSSNLDMISEAVVAVEEASLSIRRYRDSIE 293 >gi|169828966|ref|YP_001699124.1| DNA repair protein recN (recombination protein N) [Lysinibacillus sphaericus C3-41] gi|168993454|gb|ACA40994.1| DNA repair protein recN (Recombination protein N) [Lysinibacillus sphaericus C3-41] Length = 563 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I F L + F T+ G+ G GK+ I++A+ L+ GRG + R Sbjct: 2 LRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRG-----NTEFIR 56 Query: 67 IGS 69 G+ Sbjct: 57 HGA 59 >gi|49481909|gb|AAT66666.1| DNA repair and genetic recombination protein [Geobacillus caldoxylosilyticus] Length = 573 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 51/280 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL + F+ T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIYLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G A +EG+ L D + ++ + ++N Sbjct: 57 YGEEK-----AEIEGLFLLNDETHPCYGKCAEVGIDISEGMVVLRREIFATGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161 ++ V+ E+ L + LD + +R Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELM--DPARHLPLLDEFGGAEIAEALAEYRSVYEK 169 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210 +E+L + +L + + Q+ E+ ++ +V+++N + Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYE 229 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247 + + + L G D LKE Y Sbjct: 230 ALKHSYEALSGEQRGLDWIGLAMSHLDDVASIDPELKEVY 269 >gi|68536328|ref|YP_251033.1| hypothetical protein jk1249 [Corynebacterium jeikeium K411] gi|68263927|emb|CAI37415.1| hypothetical protein jk1249 [Corynebacterium jeikeium K411] Length = 543 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 24/48 (50%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 I + I F+ + F Q+ + VG NG GK+ +LEAI GR Sbjct: 2 ISKVRIRNFKGLQNYEATFSPQYNVIVGANGAGKSTLLEAIGLAIGGR 49 Score = 39.5 bits (91), Expect = 0.95, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 15/169 (8%) Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 N+L+ + Y ++ HI + L +F + + + + + K D Sbjct: 185 NSLNRGVDRYTRQLLEDHIPDEVAANLSVTLRSAFTSSTQTALESVNEKIKNDPAKPLKQ 244 Query: 266 IGPHRS-------DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318 +G + ++ +H GEQ I L+ + T I L Sbjct: 245 LGIQIDPAVSGQWQSGITPAINSLPFSHAGFGEQ-----AIAKVEVSLLKSATKADLI-L 298 Query: 319 LDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFM 365 ++E HL K L + +G QI +T V + L + Sbjct: 299 IEEPENHLSHTKLRQLLDRIKALGADQQIIVTTHSSFVLNRLGLDGLML 347 >gi|49481905|gb|AAT66664.1| DNA repair and genetic recombination protein [Geobacillus caldoxylosilyticus] Length = 573 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 51/280 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL + F+ T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIYLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G A +EG+ L D + ++ + ++N Sbjct: 57 YGEEK-----AEIEGLFLLNDETHPCYGKCAEVGIDISEGMVVLRREIFATGKSVCRVNG 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161 ++ V+ E+ L + LD + +R Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELM--DPARHLPLLDEFGGAEIAEALAEYRSVYEK 169 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210 +E+L + +L + + Q+ E+ ++ +V+++N + Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYE 229 Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247 + + + L G D LKE Y Sbjct: 230 ALKHSYEALSGEQRGLDWIGLAMSHLDDVASIDPELKEVY 269 >gi|298246203|ref|ZP_06970009.1| SMC domain protein [Ktedonobacter racemifer DSM 44963] gi|297553684|gb|EFH87549.1| SMC domain protein [Ktedonobacter racemifer DSM 44963] Length = 1048 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 24/208 (11%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I + + ++Y + F T G+NG GKT ++EAI F + + A Sbjct: 1 MLITRIELENIKSYRHFSVDFRRGTTAISGENGAGKTTLVEAIGF-ALFDSLPYSQ-ARF 58 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVVIRVVDELNK 118 R G + G E + + D+ + ++ V+ + EL Sbjct: 59 VREGEKWGRVLVHLLGGDERPYVVERRCGSGSRWLIHDEEANMRIEQGADVLDKLHELFG 118 Query: 119 HLRISWL---------VPS--MDRIFSGLSMERRRFLDRMV----FAIDPRHRRRMI-DF 162 R L VP IF + +R++ D ++ + + D+ Sbjct: 119 IDRERPLDSLFRDALGVPQGTFTSIFLEAASKRKQTFDALLQIEDYKAAAEYLLDSQKDY 178 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQM 190 M+ R + + +++ Q+ Sbjct: 179 REQMQQRQSRIDQLEYETRELEQWREQL 206 >gi|260579026|ref|ZP_05846928.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] gi|258602891|gb|EEW16166.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] Length = 549 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 24/48 (50%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 I + I F+ + F Q+ + VG NG GK+ +LEAI GR Sbjct: 8 ISKVRIRNFKGLQNYEATFSPQYNVIVGANGAGKSTLLEAIGLAIGGR 55 Score = 44.5 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 15/169 (8%) Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 N+L+ + Y ++ HI + L +F + + + + + K D Sbjct: 191 NSLNRGVDRYTRQLLEDHIPDEVAANLSVTLRSAFTSSTQTALESVNEKIKNDPAKPLKQ 250 Query: 266 IGPHRS-------DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318 +G + ++ +H S GEQ I L+ + T I L Sbjct: 251 LGIQIDPAVSGQWQSGITPAINSLPFSHASFGEQ-----AIAKVEVSLLKSATKADLI-L 304 Query: 319 LDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFM 365 ++E HL K L + +G QI +T V + L + Sbjct: 305 IEEPENHLSHTKLRQLLDRIKALGADQQIIVTTHSSFVLNRLGLDGLML 353 >gi|224074645|ref|XP_002304405.1| condensin complex components subunit [Populus trichocarpa] gi|222841837|gb|EEE79384.1| condensin complex components subunit [Populus trichocarpa] Length = 1176 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 44/314 (14%), Positives = 111/314 (35%), Gaps = 38/314 (12%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA+ +V FD G NG GK+NIL++I F ++ + R + Sbjct: 1 MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G + G E ++I++ + + L IN Sbjct: 61 NLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 + + N + V + + + + L+ ++ ++ RM + + Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQGRIT--KVLNMKPPEILSMLEEAAGTRMYETK 177 Query: 164 R--LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + ++ L + ++ ++ K+ R++ + + + Sbjct: 178 KESALK---TLEKKQSKVDEINKLLDQEILPALEKLRKERMQYMQ----WANGNSELDRL 230 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281 ++ K S E K+ + +D+ + + L+ + + + Sbjct: 231 KRFCIAYDYVQAVKIRDSAVVEVEHMKGKIAE---IDTSAEQMLVEIQQKETEISKLAAE 287 Query: 282 ITIAHGSTGEQKVV 295 + G GE K + Sbjct: 288 KEASMG--GEVKTL 299 >gi|255973421|ref|ZP_05424007.1| purine NTPase [Enterococcus faecalis T2] gi|255966293|gb|EET96915.1| purine NTPase [Enterococcus faecalis T2] Length = 785 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 11/137 (8%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 N+++I + + F++ + F+ + G NG GKT I +AI + G+ R + Sbjct: 2 NKLRINKIYLKNFKHVNEAEINFNNNDLIVLDGPNGFGKTTIFDAIELVMTGKISRITNT 61 Query: 62 ADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120 D R+G + FS + ++ ++ I+ E ++R V +I+ + Sbjct: 62 IDR-RLGYEYNLFSNKSEID-----TEVRIEFENNENRIVIAKRIDSERRFTQSDKKPDN 115 Query: 121 RISW---LVPSMDRIFS 134 + L+P IF Sbjct: 116 WNVFQTYLLPEFMSIFE 132 >gi|238019506|ref|ZP_04599932.1| hypothetical protein VEIDISOL_01375 [Veillonella dispar ATCC 17748] gi|237864205|gb|EEP65495.1| hypothetical protein VEIDISOL_01375 [Veillonella dispar ATCC 17748] Length = 1184 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L + F+++A + F T +G NG GK+NI +A+ ++ S R R Sbjct: 1 MQLLRLELKGFKSFADKTVVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ S + + D+ + + R R+ IN R Sbjct: 61 AEDIIFSGTEKRKPMSAAEVTLVFDNSDHQLDVDMAEVAITRRIYRTGESEFLINKRSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141 + D L K +D I + ERR Sbjct: 121 LKDIHLLLADTGLGKDSMAIIGQNRIDAILNSKPEERR 158 >gi|241952042|ref|XP_002418743.1| component of condensin complex, putative; structural maintenance of chromosome 2 homologue, putative [Candida dubliniensis CD36] gi|223642082|emb|CAX44048.1| component of condensin complex, putative [Candida dubliniensis CD36] Length = 1172 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K+ L I F++YA + +DAQ G NG GK+NIL+AI F+ R + Sbjct: 1 MKVDELIIDGFKSYAVRTVISNWDAQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E IS+ + + + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFNNSEVSKSPIGFENCPTISVTRQIILGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + LN + + + + + Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148 >gi|322373155|ref|ZP_08047691.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C150] gi|321278197|gb|EFX55266.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C150] Length = 1177 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKSIEMQGFKSFADKTQVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ ++ +G A SI++E I+ +R Sbjct: 61 MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIADAGESIRVERHIYRNGDNDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ ERR + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNAKPEERRAIFE 162 >gi|317057720|ref|YP_004106187.1| chromosome segregation protein SMc [Ruminococcus albus 7] gi|315449989|gb|ADU23553.1| chromosome segregation protein SMC [Ruminococcus albus 7] Length = 1191 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 86/274 (31%), Gaps = 48/274 (17%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + ++ L + F+++ L F T VG NG GK+NI +A+ ++ + R Sbjct: 1 MYLRCLELQGFKSFPDKTVLTFGKGITAVVGPNGSGKSNISDAMRWVMGEQSSKALRGEK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 A V G + F ++ +G + ++ + + + IN +R Sbjct: 61 MAGVIFHGCATRKESPFAQVTLTIDNEDGALGVDSEMVSVTRKLYKNGDSEYLINGSPVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K + I +G +RR + R+ Sbjct: 121 LKDVNELFMDTGLGKDGYSIVGQGRIADIVNGKGSDRREIFEEAAGVAKFRY-------- 172 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + + + + +A L I I L + + + Sbjct: 173 ----------KKQEAERKLIDAEDN-IARL-NDIIAELEARIGPLEKQCEKAKKFKVLDD 220 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 K +L + + E+Y KL + + Sbjct: 221 EKTALEVSV-------WVTKLEQYRAKLAENEER 247 >gi|195123793|ref|XP_002006386.1| GI21017 [Drosophila mojavensis] gi|193911454|gb|EDW10321.1| GI21017 [Drosophila mojavensis] Length = 1177 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 96/275 (34%), Gaps = 33/275 (12%) Query: 5 IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + +K L + F++Y + FD + T G NG GK+NIL++I F +S + R + Sbjct: 1 MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +IS+ + + L IN Sbjct: 61 ALQDLVYKNGQAGITKATVTIVFDNTNAQQCPPGYEKCREISVTRQVVVGGKNKFL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMID 161 +++ + + V + + + M+ + L + A + D Sbjct: 120 KLVQNKKVQDFFCSMQLNVNNPNFLIMQGKIQQVLNMKPKEVLSMVEEAAGTSLYKTKRD 179 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221 + + + EG + + +E ++ K+ R + E Sbjct: 180 ATKTLIEK----KEGKLRETS-ALLEEEVLPKLDKLRKERAAY-QEYQKTCRDI---EFL 230 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 HI +S QS A +++ ++ R+ Sbjct: 231 THIHISARYLKLCDALQSVEATEQKIEHRIATCRE 265 >gi|225868940|ref|YP_002744888.1| DNA repair protein [Streptococcus equi subsp. zooepidemicus] gi|225702216|emb|CAW99951.1| putative DNA repair protein [Streptococcus equi subsp. zooepidemicus] Length = 553 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 27/259 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ L R + +V R Sbjct: 2 LLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMLLGAR-----ASTEVIR 56 Query: 67 IGS-----PSFFSTFA--RVEGMEGLADISIKLETRDDR-----SVRCLQIND--VVIRV 112 G+ FFS A + + + IS++ E R +IN V + Sbjct: 57 HGADKAEIEGFFSVDANPHLAAVLAESGISMEEELILRRDIFANGRSVSRINGQMVTVST 116 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRR----FLDRMVFAIDPRHRRRMIDFERLMRG 168 + +L + L + D+ + F D + +++ ++ L R Sbjct: 117 LKKLGQFL--VDIHGQHDQEELMRPQLHQHILDSFGDEAFDQLKQSYQQIFDRYKALRRQ 174 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMIN-ALSSLIMEYVQKENFPHIKL 226 + + Q+ E+ + +++N L+ + L Sbjct: 175 ALEKQKNEKEHQARLDLLAFQIGEIDAADLVRGEDDLLNQERQRLLNHKKIADTLTSAYL 234 Query: 227 SLTGFLDGKFDQSFCALKE 245 SL Q ++ E Sbjct: 235 SLDNEDFSSLSQVRSSMNE 253 >gi|126653069|ref|ZP_01725204.1| DNA repair protein [Bacillus sp. B14905] gi|126590170|gb|EAZ84294.1| DNA repair protein [Bacillus sp. B14905] Length = 563 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I F L + F T+ G+ G GK+ I++A+ L+ GRG + R Sbjct: 2 LRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRG-----NTEFIR 56 Query: 67 IGS 69 G+ Sbjct: 57 HGA 59 >gi|310815120|ref|YP_003963084.1| chromosome segregation protein SMC [Ketogulonicigenium vulgare Y25] gi|308753855|gb|ADO41784.1| chromosome segregation protein SMC [Ketogulonicigenium vulgare Y25] Length = 729 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60 ++ L ++ F+++ LV T VG NG GK+N+LEA+ + R R Sbjct: 1 MQFTRLRLNGFKSFVDQTELVIQPGLTGVVGPNGCGKSNLLEALRWVMGETRPSAMRGGG 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108 DV G+ + ++ + +A +++ R R + +IN Sbjct: 61 MEDVIFAGASTRPARAHAEVALLIDNSDRVAPAGFNDNDQLEIMRRITRDAGSAYRINGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145 +R D L P++ R + + RRR L+ Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPTSRRRILE 165 >gi|303236651|ref|ZP_07323232.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302483155|gb|EFL46169.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 63 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDA--QHTIFVGDNGVGKTNILEAISFLSPG 53 +++K L I E++N F + F+G NG GK+N++EAI+ + G Sbjct: 1 MRLKSLYIQEYKNIKEQTFDFSNNTGYIAFIGLNGSGKSNLIEAIALIFNG 51 >gi|168019040|ref|XP_001762053.1| condensin complex component SMC2 [Physcomitrella patens subsp. patens] gi|162686770|gb|EDQ73157.1| condensin complex component SMC2 [Physcomitrella patens subsp. patens] Length = 1208 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 92/277 (33%), Gaps = 40/277 (14%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA+ FD G NG GK+NIL++I F ++ + R A Sbjct: 1 MYIKEICLEGFKSYATRTTVTNFDPVFNAITGYNGSGKSNILDSICFVMGITNLQQVRVA 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + ++ + G + G E +I+I + + L IN Sbjct: 61 NLQELVYKQGQAGVTKATVSIVFSNADKSRSPIGYEEHDEITITRQIVVGGRNKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163 + + N + V + + + + L+ + ++ RM + + Sbjct: 120 HLAQPSKVQNLFHSVQLNVNNPHFLIMQGRIT--KVLNMKPQETLSMLEEAAGTRMYEMK 177 Query: 164 R--LMRGRNRLLTEGYFDSSWCS-SIEAQMAELGVKINIARVEMIN--------ALSSLI 212 + ++ L + + + K+ R + + Sbjct: 178 KEGALK----TLEKKQMKVDEIDNVLNHDILPALEKLRKERAQYMQWSSGNGQLERLKRF 233 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249 Q + +K S + + + L+EEY K Sbjct: 234 CIAYQYSSADQVKNSALSEISDRKSK-IAELQEEYFK 269 >gi|37519840|ref|NP_923217.1| DNA repair protein [Gloeobacter violaceus PCC 7421] gi|35210831|dbj|BAC88212.1| DNA repair protein [Gloeobacter violaceus PCC 7421] Length = 566 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 103/311 (33%), Gaps = 37/311 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR----GFRRASYA 62 + L I F +L L F + G+ G GK+ IL+A+ + GR R + Sbjct: 2 LTHLRIENFALIDNLALDFAGGLNVLTGETGAGKSIILDALDVVLGGRVSGAQVRTGAQR 61 Query: 63 DVT--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV--VDELNK 118 V G + + + + ++ L + + + ++ R ++N V++ + EL + Sbjct: 62 AVIEATFGPSAAIADWLAAQQIDSLEEGLVVVREISGKTNRA-RVNGVLVNQAVLRELRE 120 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178 L ++ + LD I PR R +E L R + L + Sbjct: 121 QLLEITAQGQSLQLEK--PEVQLELLDN-YGEIAPRRERFRQVYETLQRRKGELARKKAA 177 Query: 179 DSSWCSSIE------AQMAELG-------VKINIARVEMINA---------LSSLIMEYV 216 ++ +++ ++ R + +A L ++ E Sbjct: 178 RDDRLQQLDLFRFQFEELSRAALDDPQEEEQLLADRSRLAHAVELQHNSLKLYEMLYEGA 237 Query: 217 QKENFPHIKLSLTGFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 + L + L G++D S L E L ++ R Sbjct: 238 LDQPAVTDLLGQSSELLIQMGEYDASLVPLGEMLENALVQVQECARAVNRYGETVESDPE 297 Query: 274 IVDYCDKAITI 284 ++Y +K + Sbjct: 298 TLEYTEKRLRQ 308 >gi|332976627|gb|EGK13468.1| hypothetical protein HMPREF9374_0890 [Desmospora sp. 8437] Length = 530 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++A L F T VG NG GK+N+ + + ++ + R AS Sbjct: 1 MHLKRLDMIGFKSFADRTELEFTPGVTAVVGPNGSGKSNVTDGMRWVLGEQSAKSLRGAS 60 Query: 61 YADVTRIGSPS 71 DV GS S Sbjct: 61 MQDVIFSGSDS 71 >gi|303229657|ref|ZP_07316445.1| chromosome segregation protein SMC [Veillonella atypica ACS-134-V-Col7a] gi|302515782|gb|EFL57736.1| chromosome segregation protein SMC [Veillonella atypica ACS-134-V-Col7a] Length = 1184 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L + F+++A + F T +G NG GK+NI +A+ ++ S R Sbjct: 1 MQLLRLELKGFKSFADKTVVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVHNLRGQR 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 D+ G+ S + +G D+ ++ R R IN R Sbjct: 61 AEDIIFSGTEKRKPMSAAEVTLVFDNADGQLDVDMQEVAITRRIYRTGESEFLINKRTCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D I + ERR ++F R I+ E Sbjct: 121 LKDIHLLLADTGLGKDSMAIIGQNRIDAILNSKPEERR-----LIFEDVAGISRFKINKE 175 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 +R ++IE Q+ L K Sbjct: 176 DALRRIASTDRNMERVRDIMATIEEQLGPLAEK 208 >gi|196250835|ref|ZP_03149521.1| SMC protein-like protein [Geobacillus sp. G11MC16] gi|196209673|gb|EDY04446.1| SMC protein-like protein [Geobacillus sp. G11MC16] Length = 508 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 24/46 (52%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 + + L I FR+ + + F I +G N GK+NI++A+ L Sbjct: 1 MFVSDLYIKNFRSIKDIHVSFKEGKNILIGKNNAGKSNIIKALDLL 46 >gi|49481895|gb|AAT66659.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC W9A88] Length = 573 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 91/275 (33%), Gaps = 49/275 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107 G+ A +EG+ L D + ++ D +IN Sbjct: 57 FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111 Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165 ++ V+ ++ L + LD + + R Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 + R L S E QMA R++++ +E + Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALXPGEDER 213 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L F + + AL++ Y +GR +DS+ Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248 >gi|313127099|ref|YP_004037369.1| ATPase involved in DNA repair [Halogeometricum borinquense DSM 11551] gi|312293464|gb|ADQ67924.1| ATPase involved in DNA repair [Halogeometricum borinquense DSM 11551] Length = 894 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 5/100 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 ++ + + F+ YA L T+ G NG GK+++LEA F G + DV Sbjct: 1 MRFDRIRLQNFKPYAETDLDLTDGVTVIHGLNGSGKSSLLEACFFALYGARALDENLEDV 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104 G+ A +E S + R +S +Q Sbjct: 61 MTTGTEE-----AEIELWFTHDGGSYHIHRRLRKSGDRVQ 95 Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 23/203 (11%) Query: 181 SWCSSIEAQMAELGVKINIAR---------VEMINALSSLIMEYVQKENFPHIKLSLTGF 231 ++ ++ ++A L K + + +E + AL E + + + T Sbjct: 660 NYLEQVDEELATLREKRDSLQSDIGGVNGELEQLEALREDRDELAARVDALESLHAETEE 719 Query: 232 LDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSD-----LIVDYCDKAITI 284 L+ + L++ + L D + R D + A+ Sbjct: 720 LEAMYGDLRAELRQRNVETLERMLNETFDLVYGNDAYSRIRLDGEYELTVFQKDGTALDP 779 Query: 285 AHGSTGEQKVVLVGIFLAHARLISN-TTGFAPI--LLLDEISAHLDEDKRNALFRIVTDI 341 S GE+ + + + A RL++ G AP+ L+LDE + LD + L +V ++ Sbjct: 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGAAPMPPLILDEPTVFLDSGHVSRLVDLVDEM 839 Query: 342 GS----QIFMTGTDKSVFDSLNE 360 QI + D + + +E Sbjct: 840 RDLGVRQIIIVSHDDELVGAADE 862 >gi|22000946|gb|AAL82734.1| structural maintenance of chromosome protein [Aspergillus fumigatus] Length = 1186 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 75/266 (28%), Gaps = 23/266 (8%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62 I + +++F Y S + + +G NG GK+ ++ AI L G R Sbjct: 109 AIVRIKVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPG 168 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-------VVDE 115 + + G +G + I + + + IN Sbjct: 169 EFVKHGCREASIEIELAKGPGLRKNPVISRTIKREGNKSSFTINGKQASLAQVKKFAQSF 228 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + + +P A P ++L + +L + Sbjct: 229 AIQIDNLCQFLPQDRVSEFAALTPVELLHSTQRAAAGPEMIEWHESLKKLRAEQKKLQLD 288 Query: 176 GYFDSSWCSSIE--AQMAELGVKINIARV------EMINALSSLIMEYVQKENFPHIKLS 227 D +++E +M + V+ R EM+ L +I + K Sbjct: 289 NQSDKDLLANLENRQEMQRVDVERMRQRAQIKRKIEMLEHLRPVIQYREARNELNQKKTE 348 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFD 253 + + L+ E A L Sbjct: 349 QR-----RLRKELEDLEAELAPALRA 369 >gi|37524600|ref|NP_927944.1| hypothetical protein plu0598 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784024|emb|CAE12893.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 522 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 26/41 (63%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 I+ L + F+ + +L L FD + I VG N GK+++L+AI Sbjct: 4 IRRLVLKNFKRFKNLELEFDPELNILVGGNEAGKSSVLQAI 44 >gi|269123683|ref|YP_003306260.1| SMC domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268315009|gb|ACZ01383.1| SMC domain protein [Streptobacillus moniliformis DSM 12112] Length = 1180 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 + +K L I+ F++++ + F T VG NG GK+NIL+AI ++ + + R A Sbjct: 1 MYLKALEINGFKSFSIKTIIDFTQGITAIVGPNGSGKSNILDAILWVLGEQSYKNIRAAM 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 +DV G + + A V + D + E + + R + N Sbjct: 61 SSDVIFSGGKNKKHANSAEVSLVIDNTDRYLDYEADEVKITRRIYRNG 108 >gi|147860968|emb|CAN78748.1| hypothetical protein VITISV_033290 [Vitis vinifera] Length = 213 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 17/123 (13%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59 + IK + + F++YA+ +V FD G NG GK+NIL++I F ++ + R + Sbjct: 1 MYIKEICLEGFKSYATRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G V G + +I++ + + L Sbjct: 61 NLQDLVYKQGQAGITKATVSVVFDDFDRSRSPLGYQDCPEITVTRQIMXGGRNKYLINGH 120 Query: 108 VVI 110 + Sbjct: 121 LAQ 123 >gi|16124628|ref|NP_419192.1| smc protein [Caulobacter crescentus CB15] gi|221233316|ref|YP_002515752.1| chromosome partition protein smc [Caulobacter crescentus NA1000] gi|6007012|gb|AAF00713.1|AF172724_1 structural maintenance of chromosomes protein homolog Smc [Caulobacter crescentus CB15] gi|13421528|gb|AAK22360.1| smc protein [Caulobacter crescentus CB15] gi|220962488|gb|ACL93844.1| chromosome partition protein smc [Caulobacter crescentus NA1000] Length = 1147 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 ++ + L +S F+++ + T VG NG GK+N+LEA+ ++ R Sbjct: 1 MQFQRLRLSGFKSFVEPTEFRIEPGLTGIVGPNGCGKSNLLEALRWVMGANSAKAMRAGG 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRS-VRCLQINDV 108 DV GS + ++ + A +++ R DR +IN Sbjct: 61 MDDVIFAGSGARPARNHADVTLTIDNADRTAPAQFNDDPILEVVRRIDRGEGSTYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145 +R D L P++ R + RRR L+ Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIGAKPQNRRRILE 165 >gi|226945099|ref|YP_002800172.1| chromosome segregation protein SMC [Azotobacter vinelandii DJ] gi|226720026|gb|ACO79197.1| chromosome segregation protein SMC [Azotobacter vinelandii DJ] Length = 1162 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 59/363 (16%), Positives = 114/363 (31%), Gaps = 61/363 (16%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKSIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGME-GLADISIKLETRDDRSVRCLQIND 107 DV GS S F + + G G A+ISI+ D +N Sbjct: 61 MTDVIFNGSNSRKPVTQASIELIFDNADGTLTGEYAGYAEISIRRRVTRDGQN-SYFLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRR 158 V R D + + L P R+ + R F++ Sbjct: 120 VKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISRLIEARPEDLRNFIEEAAG--------- 169 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + ++ R + + + S + ++ ++ E K Sbjct: 170 ISKYKERRRETENRIRRTQENLARLSDLREELERQLERLQRQAQAAEKYQECKAEERRLK 229 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY- 277 ++ G+ +Q + + + R D+ R DL + Sbjct: 230 AQLAALRWRALNEQVGQREQVIGDQEVALEALIAEQRNADAGIERLRD--EHHDLAERFH 287 Query: 278 --------CDKAITIAHGS--TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 I S G+Q+ + L E +AHLD Sbjct: 288 QVQGRFYSLGADIGRVEQSIQHGQQR-----LRQLQNDLQEAEKNRQ------ETAAHLD 336 Query: 328 EDK 330 +D+ Sbjct: 337 QDR 339 >gi|307175909|gb|EFN65722.1| Structural maintenance of chromosomes protein 6 [Camponotus floridanus] Length = 1198 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62 K+K + + F + +L +V + VG NG GK+ IL A++ R R S Sbjct: 40 KVKSIRVRNFMCHEALEIVLNENVNFIVGRNGSGKSAILTALTVGLGARANVTSRGTSVK 99 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISI 90 + + G S + + I Sbjct: 100 EFIKKGKNSAIIEITLINKGDTAFKHDI 127 >gi|299822990|ref|ZP_07054876.1| DNA repair protein RecN [Listeria grayi DSM 20601] gi|299816519|gb|EFI83757.1| DNA repair protein RecN [Listeria grayi DSM 20601] Length = 566 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 27/206 (13%) Query: 5 IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62 +K ++ L I F SL L F+ T+ G+ G GK+ I +A+ L GRG A Sbjct: 1 MKEVLQELTIKNFAIIDSLALSFEEGMTVLTGETGAGKSIIFDALGLLIGGRG-----SA 55 Query: 63 DVTRIGSPS---------FFSTFARVEGMEGL----ADISIKLETRDDRSVR-CLQINDV 108 D R G + A E ++ D + LE +S + +IN Sbjct: 56 DFIRHGEQRLELQGLFSFHETNTACKELLDENGIEFNDNEVILERSLHKSGKNTCRINGK 115 Query: 109 VIRV--VDELNKHLRISWLVPSMDRIFSGL---SMERRRFLDRMVFAIDPRHRRRMIDFE 163 ++ + +L L + + R F+ + ++ +++ Sbjct: 116 LVTTTFLRQLGSRLLDIHSQHEHQELMDENYHLPLLDR-FIGNKIAKRLENYQTAYENYQ 174 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQ 189 L + + + Q Sbjct: 175 ALQKEWQNWTKNEQEIARRIDMLHFQ 200 >gi|55821299|ref|YP_139741.1| chromosome segregation SMC protein [Streptococcus thermophilus LMG 18311] gi|55737284|gb|AAV60926.1| chromosome segregation SMC protein [Streptococcus thermophilus LMG 18311] Length = 1177 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++VFD T VG NG GK+NI E++ + S + R Sbjct: 1 MYLKSIEMQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111 DV G+ ++ ++ +G +I++E I+ +R Sbjct: 61 MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIAGVGETIRVERHIYRNGDNDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ +RR + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNAKPEDRRAIFE 162 >gi|71027371|ref|XP_763329.1| hypothetical protein [Theileria parva strain Muguga] gi|68350282|gb|EAN31046.1| hypothetical protein TP03_0311 [Theileria parva] Length = 992 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISF 49 + IK + + FR Y L L + VG NG GK+N+L A+SF Sbjct: 1 MYIKLIRLKNFRTYKDLTLFSLSPNYNAIVGLNGSGKSNVLLAVSF 46 >gi|300784656|ref|YP_003764947.1| ATPase [Amycolatopsis mediterranei U32] gi|299794170|gb|ADJ44545.1| ATPase [Amycolatopsis mediterranei U32] Length = 390 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 13/96 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--------- 57 I+ L I FR + L T +G NG GK+ + +A+ FLS R Sbjct: 7 IERLRIRNFRVLRDVELAGLTPVTALLGPNGSGKSTVFDALDFLS--ESLRAGLRSAWNQ 64 Query: 58 RASYADVTRIGSPSFFSTFA--RVEGMEGLADISIK 91 R AD+ GS R+EG ++I+ Sbjct: 65 RGGAADIVTHGSTGPVEIEVTCRIEGAVAEYRLAIE 100 >gi|284048840|ref|YP_003399179.1| chromosome segregation protein SMC [Acidaminococcus fermentans DSM 20731] gi|283953061|gb|ADB47864.1| chromosome segregation protein SMC [Acidaminococcus fermentans DSM 20731] Length = 1187 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 38/225 (16%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++K + F+++A + + F+ T VG NG GK+NI +AI ++ + R Sbjct: 1 MRLKSFSAHGFKSFADKVNIDFEPGITAIVGPNGSGKSNISDAIRWVLGEQSVKYLRGTK 60 Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111 DV GS A V+ + D S+ ++ + R + IN R Sbjct: 61 MEDVIFAGSSGRRPMGMAEVDLVFDNTDHSLPVDFDEVSLQRRVFRSGDSEYIINGKNCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + +D I + +RR + + + Sbjct: 121 LKDVVALFADTGLGRGSLSIIGQNKIDEILNSRPEDRRSIFEEAAG---------IAKYR 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSS------IEAQMAELGVKINIARV 202 +R + L ++ IE Q+ L AR Sbjct: 172 --LRKKEALRKLDDTAANLLRIQDIQSEIENQLVPLEAAAEKARQ 214 Score = 36.4 bits (83), Expect = 8.1, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 K ++ S GE+ + ++ + A T AP ++LDEI A LDE + + Sbjct: 1083 GKKMRNLSLFSGGERALTVIALLFALL-----TYQPAPFVILDEIDAPLDETNIDRFAQF 1137 Query: 338 VTDIGSQI-FMTGTDK 352 + G Q F+ T + Sbjct: 1138 LKAYGQQTQFIVITHR 1153 >gi|330939978|gb|EGH43179.1| chromosome segregation protein SMC [Pseudomonas syringae pv. pisi str. 1704B] Length = 1162 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 DV GS S S + +G A+ISI+ + D +N Sbjct: 61 MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158 R D + + L P I + R F++ Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + ++ R + + + + + + ++ +++ E K Sbjct: 170 ISKYKERRRETENRIRRTHQNLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 ++ L G+ + + + + D R D+ R G H DL + Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287 Query: 279 ---------DKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314 >gi|325860349|ref|ZP_08173468.1| hypothetical protein HMPREF9303_0079 [Prevotella denticola CRIS 18C-A] gi|325482143|gb|EGC85157.1| hypothetical protein HMPREF9303_0079 [Prevotella denticola CRIS 18C-A] Length = 83 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 5 IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 + IK + I FR+Y + + T+ +GDNG GKT EA+ +L Sbjct: 1 MIIKEIRIKNFRSYYGDNNHIEVTPGLTLILGDNGDGKTTFFEALQWL 48 >gi|322411351|gb|EFY02259.1| putative chromosome segregation SMC [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1181 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 34/214 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++ FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEMQGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ ++ + A I++E R+ I+ +R Sbjct: 61 MPDVIFAGTENRSPLNYAQVAVVLDNSDHFIKEAKEVIRIERHIYRNGDSDYLIDGRKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + ++ ++ Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEE---------AAGVLKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAEL 193 + L + + +E Q+ L Sbjct: 172 TRKKETQSKLNQTQDNLDRLDDIIYELENQLVPL 205 >gi|229620418|gb|ACQ84165.1| truncated structural maintenance of chromosomes family protein 6A [Arabidopsis thaliana] Length = 876 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 83/271 (30%), Gaps = 35/271 (12%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62 KI + + F +++L + F G NG GK+ IL A+ R R A+ Sbjct: 22 KILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATLK 81 Query: 63 DVTRIGSPSFFSTFARVEGM----------------EGLADISIKLETRDDRSVRCLQIN 106 D + G S+ + ++ E S L D R + Sbjct: 82 DFIKTGC-SYALVYVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQGRKISSR 140 Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166 +R EL +H I P + R FL + + L+ Sbjct: 141 KEELR---ELVEHYNIDVENPC----VIMSQDKSREFLHSGNDKDKFKFFYKAT----LL 189 Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226 + + +L + +++ +M + I IN L I E L Sbjct: 190 QQVDDILQSIGTKLNSANALLDEMEKTIKPIEKE----INELLEKIKNMEHVEEITQQVL 245 Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257 L L + +E +K+ ++ Sbjct: 246 HLKKKLAWSWVYDVDRQLKEQNEKIVKFKER 276 >gi|226530720|ref|NP_001140280.1| hypothetical protein LOC100272324 [Zea mays] gi|194698834|gb|ACF83501.1| unknown [Zea mays] Length = 395 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 +I L + F++Y + T +G NG GK+N+++AISF+ R R A Sbjct: 21 RIDRLVVENFKSYKGEQTIGPFVDFTAIIGPNGAGKSNLMDAISFVLGVRSTHLRGAQLK 80 Query: 63 DVT 65 D+ Sbjct: 81 DLI 83 >gi|42518980|ref|NP_964910.1| hypothetical protein LJ1055 [Lactobacillus johnsonii NCC 533] gi|41583267|gb|AAS08876.1| hypothetical protein LJ_1055 [Lactobacillus johnsonii NCC 533] Length = 578 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 60/372 (16%), Positives = 130/372 (34%), Gaps = 56/372 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + I +NI FRNY + + ++ ++ +G N VGKTN + A+ L R S D+ Sbjct: 1 MLIYRVNIKGFRNYEDVDVYLNSS-SLIIGSNNVGKTNFIYALRLLFD----RNLSENDL 55 Query: 65 TRIGSP-SFFSTFARVEGMEGLADISIKL---ETRDDRSVRCLQINDVVIRVVDELNKHL 120 + S + +S +VE L DI+ + E + + + L + + D + + Sbjct: 56 DLLDSDFNAYSHSDKVEITAYLKDINEECLLSEFKGNINEGKLILKYTKEKNQDYILQA- 114 Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180 + S RR + + + ++ + + L+ LL+E + Sbjct: 115 ---GFSEDTMQELKSRSYLRRLSMQYVDTNRN-LYKYLRKERQNLLLNSQELLSEEQKND 170 Query: 181 SWCSSIEAQ--MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238 +IE Q + + KI+ + I + + + + + ++ F+ G D Sbjct: 171 DKTKTIEIQKNLNSINEKISS--LNYIKNALENVNKELSSLSVENEDQNIQ-FVAGHND- 226 Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298 E+ + + GP + D + +T + Sbjct: 227 -----AEKMLSDVALSYSSEE-------GP-----LTLGGDGRNNQIYLATWRAR----- 264 Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDS 357 + + ++E AHL ++ L + +T + Q+ +T Sbjct: 265 ------QELKAGPDHVTFYAIEEPEAHLHPHQQRKLAQYLTKSLKGQVIVTS-------H 311 Query: 358 LNETAKFMRISN 369 + A+ + N Sbjct: 312 SPQIAEIFKAEN 323 >gi|323136710|ref|ZP_08071791.1| chromosome segregation protein SMC [Methylocystis sp. ATCC 49242] gi|322398027|gb|EFY00548.1| chromosome segregation protein SMC [Methylocystis sp. ATCC 49242] Length = 1151 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 57/299 (19%), Positives = 108/299 (36%), Gaps = 50/299 (16%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60 +K + L + F+++ + + T VG NG GK+N++EA+ ++ + R + Sbjct: 1 MKFERLRLLGFKSFCEPTDFLIEPGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108 DV G + +F ++ + LA SI++ R +R +IN Sbjct: 61 MDDVIFSGGGSRPARNFAEVGLVLDNSQRLAPAAFNDSDSIEVTRRIEREQGSNYRINGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR---MVFAIDPRH-- 155 +R D L PS+ R I S RRR L+ + RH Sbjct: 121 EVRARDVQLLFADAATGARSPSLVRQGQIGEIISAKPQARRRILEDAAGVAGLHSRRHEA 180 Query: 156 -------RRRMIDFERLMRG---RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205 + E +++ ++ L +S +L KI E + Sbjct: 181 ELRLNAASENLTRLEDVLKQVESQSDSLKRQARQASRYR-------DLAAKIRQN--EAL 231 Query: 206 NALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMSR 262 AL S + Q ++ ++ L +Q+ A + A +L R+ ++ + Sbjct: 232 AALVSYQIATDQLRDAAQKLEADLRNVQARTLEQAEAAKFQAIAAHELPALREREAEAG 290 Score = 36.8 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 26/195 (13%) Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF- 231 L E D ++ + + +I R +M++ + E ++K L+ G Sbjct: 934 LEELRGDRERLGAVNLRAEDELTEIEAQREKMMSE-RDDLNEAIKKLRSAIASLNKEGRE 992 Query: 232 -LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD--------KAI 282 L FD+ KE + LFDG + D + D K Sbjct: 993 RLLAAFDKVNAHFKELF-TLLFDGGSAELQL------VESDDPLEAGLDILARPPGKKPQ 1045 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342 T+ S GEQ + + + A T +PI +LDE+ A LD+ ++ ++ Sbjct: 1046 TMTLLSGGEQALTAMSLIFAVF-----LTNPSPICVLDEVDAPLDDSNVERFCDLLEEMR 1100 Query: 343 SQI---FMTGTDKSV 354 + F+T T + Sbjct: 1101 KKTDTRFVTITHNPI 1115 >gi|300858883|ref|YP_003783866.1| hypothetical protein cpfrc_01466 [Corynebacterium pseudotuberculosis FRC41] gi|300686337|gb|ADK29259.1| hypothetical protein cpfrc_01466 [Corynebacterium pseudotuberculosis FRC41] gi|302206583|gb|ADL10925.1| Putative SMC domain-containing protein [Corynebacterium pseudotuberculosis C231] gi|308276826|gb|ADO26725.1| Conserved hypothetical protein [Corynebacterium pseudotuberculosis I19] Length = 543 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 57/396 (14%), Positives = 114/396 (28%), Gaps = 104/396 (26%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR------------ 54 I + I +R + +A I VG N GK+ +LEAI+ GR Sbjct: 5 ITRVQIRGYRRFQDFTFEPEAGTNIIVGGNEAGKSTLLEAITLALAGRVNGVRAKEYLNP 64 Query: 55 ---GF-------------RRASYADVTRIGSPSFFSTFARVEGMEGLADIS----IKLET 94 R A RI +E + G+ ++ + L Sbjct: 65 YWFNHTMVHDFFEKPPNERSHRDAPTFRIDV-YLDVESGELEKLRGVNNMENADSVGLSI 123 Query: 95 RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS----GLSMERRRFLDRMVFA 150 + + +D+ + ++P + G +RR + + Sbjct: 124 -------WAHPDPEYTQELDDYFQQEDCPEVLPVEYYMVEWLSFGGHPVQRRPKELGISL 176 Query: 151 IDPR--HRRRMIDF--ERLMRGRNRLLTEGYFDSSWCSSIEAQM-AELGVKINIARVEMI 205 ID R R +D+ +++ R D S S ++ A LG E++ Sbjct: 177 IDSRTIRSERGVDYYTRQILETR-----LDPKDRSRVSVDHRKLRATLG-------REVL 224 Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 L+ + E Q + L + ++ Sbjct: 225 RDLNEELAEENQSIPGAVVGLQIDQSRSASWEA--------------------------T 258 Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 + P D+ + + K +L + + ++ ++E H Sbjct: 259 LIPDVDDVPLSMAGQGNQAVA------KTIL---------AMGRNADTSSLVFIEEPENH 303 Query: 326 LDEDKRNALFRIV--TDIGSQIFMTGTDKSVFDSLN 359 L + L + + Q+F+T + + L Sbjct: 304 LSHTRMRQLISYIERSAQNRQVFITTHSSYILNRLG 339 >gi|294791674|ref|ZP_06756822.1| putative cell division protein Smc [Veillonella sp. 6_1_27] gi|294456904|gb|EFG25266.1| putative cell division protein Smc [Veillonella sp. 6_1_27] Length = 1184 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L + F+++A + F T +G NG GK+NI +A+ ++ S R R Sbjct: 1 MQLLRLELKGFKSFADKTIVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ S + + DI + + R R+ +N R Sbjct: 61 AEDIIFSGTEKRKPMSAAEVTLVFDNSDQQLDIDMAEVAITRRIYRTGESEFLVNKRSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141 + D L + +D I + ERR Sbjct: 121 LKDIHLLLADTGLGRDSMAIIGQNRIDAILNSKPEERR 158 >gi|241205545|ref|YP_002976641.1| DNA repair protein RecN [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859435|gb|ACS57102.1| DNA repair protein RecN [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 557 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 101/299 (33%), Gaps = 43/299 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I + L L F+ ++ G+ G GK+ +L+++S GRG D+ R Sbjct: 2 LIQLSIRDIVLIERLDLAFETGLSVLTGETGAGKSILLDSLSLALGGRG-----DGDLVR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ------------INDVVIR-VV 113 G T GME A ++ DD + +ND + + Sbjct: 57 HGEDKGQVTAVFDVGMEHGARTLLRENGIDDEGDLIFRRQQSADGRTKAYVNDQPVSVQL 116 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDFERLMRG 168 + + DR + R L V + + R D ER ++ Sbjct: 117 MRQAGQMLVEIHGQHDDRALVDTNAHRTLLDAFAGLTDEVSEVSRLY-RLWRDSERTLKN 175 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMI--NALSSLIMEYVQ--- 217 + ++ + S ++ +L ++ R +M+ ++ I E + Sbjct: 176 HREKVESAAREADYLRSSVEELEKLSPQDGEEEELADRRQKMMKAERIAGDIAEASEFLN 235 Query: 218 --KENFPHI-----KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGP 268 PHI +L + L + +L + + ++++ R+T P Sbjct: 236 GNASPVPHIASLVRRLERKSHEAPGLLEDTVTLLDAALDQLSNAQMEVEAALRKTEYDP 294 >gi|149174748|ref|ZP_01853373.1| hypothetical protein PM8797T_26470 [Planctomyces maris DSM 8797] gi|148846442|gb|EDL60780.1| hypothetical protein PM8797T_26470 [Planctomyces maris DSM 8797] Length = 454 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 17/111 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYADV 64 +K + + F +++ + T+ G N GK+ + A+ L+ F + Sbjct: 9 LKRITLHNFMSHSHTVIDLSPGLTVLTGPNNCGKSAFVSALQILAENTTGDF-------M 61 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 R G +G +E + + I+ V + Sbjct: 62 VRHGEKECRVIVETDDGH--------TIEWKRKKKTVSYNIDGVDYHRLRN 104 >gi|66805443|ref|XP_636454.1| structural maintenance of chromosome protein [Dictyostelium discoideum AX4] gi|74852390|sp|Q54I56|SMC6_DICDI RecName: Full=Structural maintenance of chromosomes protein 6; Short=SMC protein 6; Short=SMC-6 gi|60464832|gb|EAL62951.1| structural maintenance of chromosome protein [Dictyostelium discoideum AX4] Length = 1185 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 12/117 (10%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63 I+ + + F + +L F + G+NG GK+ +L A+ + GF R + +D Sbjct: 149 IESITLENFMCHRHFKLDFCSNVNFIAGENGSGKSAVLIALIVCLGAKAGFTNRGSKLSD 208 Query: 64 VTRIGSPSF-FSTFARVEGME----GLADISIKLETRDDRSV----RCLQINDVVIR 111 + + + + + R +G E S+ +E R R+ + N + Sbjct: 209 LVKAETNTAVITVKLRNQGQEAFKPEKYGKSVIIERRISRTGSSGYKVKDYNGKTVS 265 >gi|227826498|ref|YP_002828277.1| hypothetical protein M1425_0087 [Sulfolobus islandicus M.14.25] gi|229583660|ref|YP_002842161.1| hypothetical protein M1627_0087 [Sulfolobus islandicus M.16.27] gi|227458293|gb|ACP36979.1| conserved hypothetical protein [Sulfolobus islandicus M.14.25] gi|228018709|gb|ACP54116.1| conserved hypothetical protein [Sulfolobus islandicus M.16.27] Length = 495 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 ++I +S FR+ + + L + VG NG GKTN+L +I Sbjct: 1 MRITEFYVSNFRSLSEVNLKDLGGFNVVVGYNGYGKTNLLSSIFLF 46 >gi|227824341|ref|ZP_03989173.1| chromosome segregation protein SMC [Acidaminococcus sp. D21] gi|226904840|gb|EEH90758.1| chromosome segregation protein SMC [Acidaminococcus sp. D21] Length = 1186 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 99/303 (32%), Gaps = 48/303 (15%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++K F+++A + + F+ T VG NG GK+NI +AI ++ + R Sbjct: 1 MRLKSFEAHGFKSFADKVNVNFENGITAIVGPNGSGKSNISDAIRWVMGEQSIKYLRGTK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV GS + + + + + + R RS IN R Sbjct: 61 MEDVIFAGSSARRPLGMADVTLVFDNRDHDLPVDFDEVSIRRRVYRSGESEYAINGKNCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + +D I + +RR + + + Sbjct: 121 LKDIVNLLADTGLGRGSLSIIGQNKIDEILNSRPEDRRTIFEETAG---------IAKYR 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQ---------MAELGVKIN-----IARVEMIN--A 207 +R + L + + Q + + K+ AR E++ Sbjct: 172 --LRKKEALRKLDDTAGNLLRIHDIQTEISSQLKPLEKAAEKVRTYKELDARYELVRVTQ 229 Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267 L + +++ +L G + + D+ L+ E K + + ++ +G Sbjct: 230 LVRRLDHLEKEKGDIEARLEGWGKEERRLDEEAAKLQSEIDAKNKELQAHEASFGAYQVG 289 Query: 268 PHR 270 + Sbjct: 290 VRK 292 >gi|110632905|ref|YP_673113.1| ATP-dependent OLD family endonuclease [Mesorhizobium sp. BNC1] gi|110283889|gb|ABG61948.1| ATP-dependent endonuclease of the OLD family-like protein [Chelativorans sp. BNC1] Length = 615 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 62/387 (16%), Positives = 122/387 (31%), Gaps = 52/387 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA---- 59 ++++ L I+ FR + + F HT+ VG N VGK+ + EA+ L P R FRR Sbjct: 1 MRVRRLKITNFRGVSQGCIDFS-GHTLLVGGNNVGKSTVCEALDLVLGPERLFRRPVVDE 59 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116 R + R+E + L D+S + R +R + +D +DE Sbjct: 60 HDFHCGRYLTEDGAPVEIRIEAI--LVDLSEEATRRFGGHLR--RWDDQAGTFIDERENG 115 Query: 117 ---NKHLRISWLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMID----------- 161 + W +P +F G + F+ F + + + Sbjct: 116 LDQADAPGVVWALP---LLFVGRYDRDEDDFVGNTFFDHPTKELDALDEETEIKLGQGRV 172 Query: 162 -FERLMRG-------RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213 F R+ + R S +++ + G + + L +L Sbjct: 173 PFTRVHKRLCGFVFLRTLRTGSRALSLQRGSLLDSVLKLGGSGAVEMWQDTLGRLQALDP 232 Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSD 272 + E I+ + + + + +A L + + P + Sbjct: 233 AIGEIEQLKQIRAEVRSRMGRFVNLAPGDNSTAFFASDLTREHLREVVRLFIAAQPGQHL 292 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 + TG +++ + A L + I ++E L + Sbjct: 293 VPFGRLG---------TGSINLLVFALLTFIAEL---KDKQSVIFAMEEPEIALPPHTQR 340 Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLN 359 + R V Q +T V + + Sbjct: 341 RVTRFVLAEMGQSIVTSHSPYVIEQFD 367 >gi|294659255|ref|XP_461610.2| DEHA2G01606p [Debaryomyces hansenii CBS767] gi|199433822|emb|CAG90057.2| DEHA2G01606p [Debaryomyces hansenii] Length = 1213 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 97/277 (35%), Gaps = 10/277 (3%) Query: 93 ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152 E + + D + R + EL ++ D+ S +++ ++ + Sbjct: 918 EKNLSKKAILVARRDEIQRKISELGVLPEEAFQQSIYDKFNSDQLLKKLTNVNDNLSKYS 977 Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 +++ M + + R+ L+ SIE + L + + A + ++ Sbjct: 978 HINKKAMEQYHTFTKQRDELMERRKELEKSRESIENLITSLETQKDEAITQSFKQVAKSF 1037 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272 E +K + + D +++ ++E + + ++ + +G S Sbjct: 1038 HEIFEKLVPAGVGNLIMQKKDQSLNRNDEEDEDEIMRSSDEHSIDEAQNIDNYVGVSISA 1097 Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332 D+ I S G++ + + + LA AP L DEI A+LD R Sbjct: 1098 SFNSKNDEQQRIEQFSGGQKSLCAIALILA-----IQKCDPAPFYLFDEIDANLDTQYRT 1152 Query: 333 ALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRI 367 A+ ++ + +Q T + L KF + Sbjct: 1153 AVAAMINSLSNKAQFICTT---FRPEMLQVADKFYGV 1186 Score = 51.1 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61 + IK + I F+ Y + ++ QH + VG NG GK+N AI LS Sbjct: 1 MHIKRIIIQGFKTYKNTTVIDLVSPQHNVVVGRNGSGKSNFFAAIRFVLSDAYTHMTREE 60 Query: 62 AD-VTRIGSPSFFSTFARV 79 + GS + S + + Sbjct: 61 RQGLIHEGSGTVMSAYVEI 79 >gi|315231626|ref|YP_004072062.1| hypothetical protein TERMP_01864 [Thermococcus barophilus MP] gi|315184654|gb|ADT84839.1| hypothetical protein TERMP_01864 [Thermococcus barophilus MP] Length = 865 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72 F ++ ++ F T+F+G NG GKT+I++AI R + D+ G Sbjct: 2 KNFLSHKDTKIDFPLGVTVFIGPNGAGKTSIIDAIFVALFNTLPRGDKFDDIIYRGERE- 60 Query: 73 FSTFARVEGMEGLADISIKLETRDDRSV 100 A++E I K+ R + Sbjct: 61 ----AKIELEFEEGGIPYKIVWRRKKGK 84 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 79/218 (36%), Gaps = 30/218 (13%) Query: 151 IDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI---NIARVEM 204 + +H + FER + +N L + + + ++ E + + Sbjct: 643 VRKKHEELLRQFERTKAELEEKNNSLKKKLEELNEVKEKIKELEEKLNNLEAELDKVKKF 702 Query: 205 INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264 IN L + Y + + L KF + L Y + MD Sbjct: 703 INDLERIRAAYHKDG--------VQKLLRKKFAPALSELATNYIE----SFNMDI---TD 747 Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 + D+ V + I+ S GE+ V + + LA AR+++ ++++DE + Sbjct: 748 IYLSEDFDISVTKNSVEVPISLLSGGEKVAVALALRLAIARVLARRL---SVIIMDEPTT 804 Query: 325 HLDEDKRNALFRIVTDIG------SQIFMTGTDKSVFD 356 HLDE++R L I+ QI + + + D Sbjct: 805 HLDEERRRDLVEILGKFFKAENTVPQIIIVTHHRELED 842 >gi|308063229|gb|ADO05116.1| hypothetical protein HPSAT_01845 [Helicobacter pylori Sat464] Length = 394 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 I+ + I F+N+ + + I G+N GK+N+LEA+ L G+ Sbjct: 2 IQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEALYCL-VGKS 49 >gi|242809237|ref|XP_002485327.1| structural maintenance of chromosome complex subunit SmcA [Talaromyces stipitatus ATCC 10500] gi|218715952|gb|EED15374.1| structural maintenance of chromosome complex subunit SmcA [Talaromyces stipitatus ATCC 10500] Length = 1234 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 71/216 (32%), Gaps = 12/216 (5%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62 I + + +F Y ++ F +Q + +G NG GK+ ++ AI L G R + Sbjct: 142 AIVRMKLKDFVTYTNVEYHFGSQLNMIIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDAS 201 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHL 120 + + G G + ++ + + + I+ + V +L + Sbjct: 202 EFVKHGCKEAIIEIELARGPPFKKNPVVRRVIKFEGNKSTFSIDGRDASRKQVMKLAQKF 261 Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 I +P A P+ D +R+ + RLL + Sbjct: 262 SIQIDNLCQFLPQDKVSEFAALTPVELLYSTQRAAAGPQMIEWHDDLKRIRAEQKRLLAD 321 Query: 176 GYFDSSWCSSI--EAQMAELGVKINIARVEMINALS 209 D S++ ++ V+ R ++ + Sbjct: 322 NKGDRDLLSNLQNRQELQRADVERVRERAKIKRRIE 357 >gi|118781858|ref|XP_311902.3| AGAP002985-PA [Anopheles gambiae str. PEST] gi|27227582|emb|CAD59408.1| SMC6 protein [Anopheles gambiae] gi|116129292|gb|EAA07909.3| AGAP002985-PA [Anopheles gambiae str. PEST] Length = 1133 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62 K+ + + F + + + F+ + + VG NG GK+ IL A++ + G+ R +S Sbjct: 86 KVLKIVLKNFMCHRHMVVEFNKRANLLVGKNGSGKSAILAAMTIGLGCNAGQTNRCSSLK 145 Query: 63 DVTRIGSPSFF 73 D+ + G Sbjct: 146 DLIKHGETQAV 156 >gi|297529444|ref|YP_003670719.1| DNA repair protein RecN [Geobacillus sp. C56-T3] gi|297252696|gb|ADI26142.1| DNA repair protein RecN [Geobacillus sp. C56-T3] Length = 573 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG A+ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56 Query: 67 IGSPSFFSTFARVEGM 82 G+ A +EG+ Sbjct: 57 FGAEK-----AEIEGL 67 >gi|255970708|ref|ZP_05421294.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|312953195|ref|ZP_07772041.1| segregation protein SMC [Enterococcus faecalis TX0102] gi|255961726|gb|EET94202.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|310628812|gb|EFQ12095.1| segregation protein SMC [Enterococcus faecalis TX0102] gi|315152763|gb|EFT96779.1| segregation protein SMC [Enterococcus faecalis TX0031] gi|315159401|gb|EFU03418.1| segregation protein SMC [Enterococcus faecalis TX0312] gi|327536217|gb|AEA95051.1| cell division protein Smc [Enterococcus faecalis OG1RF] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALVLATKDVEKYSKSSKELMEELRSQ 384 >gi|188527177|ref|YP_001909864.1| hypothetical protein HPSH_01920 [Helicobacter pylori Shi470] gi|188143417|gb|ACD47834.1| hypothetical protein HPSH_01920 [Helicobacter pylori Shi470] Length = 396 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 I+ + I F+N+ + + I G+N GK+N+LEA+ L G+ Sbjct: 2 IQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEALYCL-VGKS 49 >gi|166367523|ref|YP_001659796.1| DNA replication and repair protein [Microcystis aeruginosa NIES-843] gi|166089896|dbj|BAG04604.1| DNA replication and repair protein [Microcystis aeruginosa NIES-843] Length = 60 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 + L + F++Y L A T +G N GK+N LEAI LS Sbjct: 2 LTSLTLRNFKSYQEATLSLAA-ITFLIGANASGKSNALEAIRLLS 45 >gi|71412992|ref|XP_808655.1| structural maintenance of chromosome (SMC) family protein [Trypanosoma cruzi strain CL Brener] gi|42740744|gb|AAS44546.1| structural maintenance of chromosome protein 1 [Trypanosoma cruzi] gi|70872905|gb|EAN86804.1| structural maintenance of chromosome (SMC) family protein, putative [Trypanosoma cruzi] Length = 1262 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 20/132 (15%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 I + + F++YA ++ + T VG NG GK+N+++A+ F+ S R Sbjct: 4 HIDRVELYNFKSYAGNVTIGPLKDFTCIVGPNGAGKSNLMDALCFVLSPSATTTLRGKDA 63 Query: 62 ADVTRIGSPSFFSTFARV---------------EGMEGLADISIKLETRDDRSVRCL-QI 105 D+ G+ V D I D+ R +I Sbjct: 64 TDLIHRGAQRKECAVTAVFCHTTPISPAATATTTAAGQGRDTEISFTRAVDQRGRITHKI 123 Query: 106 NDVVIRVVDELN 117 N + L Sbjct: 124 NGEPVDDRKYLA 135 >gi|307288869|ref|ZP_07568842.1| segregation protein SMC [Enterococcus faecalis TX0109] gi|306500141|gb|EFM69485.1| segregation protein SMC [Enterococcus faecalis TX0109] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|256618146|ref|ZP_05474992.1| chromosome partition protein SMC [Enterococcus faecalis ATCC 4200] gi|256597673|gb|EEU16849.1| chromosome partition protein SMC [Enterococcus faecalis ATCC 4200] gi|315031784|gb|EFT43716.1| segregation protein SMC [Enterococcus faecalis TX0017] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|254173478|ref|ZP_04880150.1| chromosome segregation protein SMC [Thermococcus sp. AM4] gi|214032170|gb|EEB73000.1| chromosome segregation protein SMC [Thermococcus sp. AM4] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 89/283 (31%), Gaps = 36/283 (12%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 I+ + + F++Y + + T VG NG GK+NI +A+ F+ G R Sbjct: 4 IEKIEMKGFKSYGNRKVVVPLSKGFTAIVGANGSGKSNIGDAVLFVLGGLSAKAMRATRI 63 Query: 62 ADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRVV 113 +D+ G+ + +A V D ++ + R + + Sbjct: 64 SDLIFAGNKAEPPAKYAEVAMYFNNEDRGFPIDEDEVVIKRRVYPDGRSTYWLNGKRATR 123 Query: 114 DELNKHLRISWLVPSMDRIFSGL--------SMERRRFLDRMVFAIDPRHRRRMIDFERL 165 E+ L + + P + S RR + + I E+ Sbjct: 124 SEILDLLSAAMISPEGYNLVLQGDITKFIKMSATERRLIIDEISGI----AEYDAKKEKA 179 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL-------SSLIMEYVQK 218 + L + + + + ++ + K+ R + + L + + + + Sbjct: 180 LEE----LKKAEENLARVDLLIKEVKKQLDKLEKERNDALRYLDLKEKVERARVALLLGE 235 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 + L + D ++ ++ E + + + Sbjct: 236 IKRLELLLEESRNRDSGIEEEIGKVEAELKALVKEIIAREREL 278 Score = 41.4 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 20/190 (10%) Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225 ++ R + E + + E + +E+ + ++ E KE+ Sbjct: 957 LKERIESMEEEIRS---LEPVNMKAIEDFEVVERRYLELSSKREQVLAE---KESIEEFI 1010 Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLIVDYCDK 280 + G F ++ A+ + +++ LF +R L P ++ K Sbjct: 1011 AEIEGQKREVFMRTLEAIAKNFSE-LFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGK 1069 Query: 281 AITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339 + S GE+ + + A AP L DEI AHLD+ + ++ Sbjct: 1070 DVKRIEAMSGGEKALTALAFVFA-----IQRYKPAPFYLFDEIDAHLDDANVKRVADLIK 1124 Query: 340 DIGS--QIFM 347 + Q + Sbjct: 1125 ESSQSSQFIV 1134 >gi|167745646|ref|ZP_02417773.1| hypothetical protein ANACAC_00338 [Anaerostipes caccae DSM 14662] gi|167654958|gb|EDR99087.1| hypothetical protein ANACAC_00338 [Anaerostipes caccae DSM 14662] Length = 1186 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 79/219 (36%), Gaps = 26/219 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + ++ F+++A+ + FD+ T VG NG GK+N+ +A+ L + R A Sbjct: 1 MYLKSIEVNGFKSFANKMIFKFDSGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAK 60 Query: 61 YADVTRIGSPS---FFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVVIR 111 DV G+ S + + + I E +N R Sbjct: 61 MEDVIFSGTEMRKPMGSAYVAITMDNSDHSLPIGFEEVTVARRVYRSGESEYLMNGSPCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 D + K +D+I SG +RR D + +++ ++ E Sbjct: 121 RKDIVELFFDTGIGKEGYSIIGQGQIDQILSGKPEDRRELFDEAAGIVK--YKKNKLETE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 + + L + + +E Q+ L + AR Sbjct: 179 KSLEAERENLNRV---TDILTELERQVGPLKTQSEKARE 214 Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 73/211 (34%), Gaps = 27/211 (12%) Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL--IME 214 ++E G + ++ ++AE+ +I +NA+ ++E Sbjct: 944 YMWENYELTYHQAKSAA--GEEPRESLTELKKKIAEIKTQIRELGPVNVNAIEDYRDVLE 1001 Query: 215 YVQKENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273 + H + L G D+ A++ ++ +K D ++M + L G + L Sbjct: 1002 RYEFLKKQHEDIVKAEAHLAGLIDELEAAMRNQFREKFKDIQEMFQKVFQELFGGGYARL 1061 Query: 274 IVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318 + D K + S GE+ + + + A +P L Sbjct: 1062 ELTDDDVLESGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQNLKPSPFCL 1116 Query: 319 LDEISAHLDEDKRNALFRIVTDI--GSQIFM 347 LDEI A LD+ + + + +Q + Sbjct: 1117 LDEIEAALDDSNVARFAQYLHKLTKETQFIV 1147 >gi|78047117|ref|YP_363292.1| recombination protein N [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035547|emb|CAJ23193.1| recombination protein N [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 589 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 96/278 (34%), Gaps = 38/278 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F + L F T+ G+ G GK+ +++A+ FLS R + + V R Sbjct: 37 LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 91 Query: 67 IGSPSF-----FSTFARVEGMEGLADISIKLE--------TRDDRSVRCLQINDVVI--R 111 G+ F A G+ LAD + E R D R IN + Sbjct: 92 HGAERAELSAEFQLPAEHPGLRWLADNELDDEAQCQLRRIIRADGGSRA-WINGRPVTSS 150 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168 + EL L + + S LD R + R+ ++ L+ Sbjct: 151 QLAELASKLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQREQV-RQASQRWQALLDE 207 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHI 224 R+ L +G S +E Q+AEL R ++ I AL Sbjct: 208 RDALSAQGDV-SDRIGFLEHQLAEL------EREDLDPAAIAALDVNHRRQAHATALIGA 260 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 S+ L+G S L ++ L + + Sbjct: 261 CDSVAQQLNGDDGASALGLLQDSRHDLSRVAEHEPRLG 298 >gi|257088211|ref|ZP_05582572.1| chromosome partition protein SMC [Enterococcus faecalis D6] gi|256996241|gb|EEU83543.1| chromosome partition protein SMC [Enterococcus faecalis D6] gi|315026455|gb|EFT38387.1| segregation protein SMC [Enterococcus faecalis TX2137] gi|315171218|gb|EFU15235.1| segregation protein SMC [Enterococcus faecalis TX1342] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|256962934|ref|ZP_05567105.1| chromosome partition protein SMC [Enterococcus faecalis HIP11704] gi|307273592|ref|ZP_07554820.1| segregation protein SMC [Enterococcus faecalis TX0855] gi|256953430|gb|EEU70062.1| chromosome partition protein SMC [Enterococcus faecalis HIP11704] gi|306509605|gb|EFM78647.1| segregation protein SMC [Enterococcus faecalis TX0855] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALVLATKDVEKYSKSSKELMEELRSQ 384 >gi|126460242|ref|YP_001056520.1| SMC domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126249963|gb|ABO09054.1| SMC domain protein [Pyrobaculum calidifontis JCM 11548] Length = 795 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 17/162 (10%) Query: 6 KIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRAS 60 +I + + FR+Y RL + G G GKT++ AI + G+ R A Sbjct: 3 RISRVELENFRSYRGAHRLELGD-VNLLWGRIGAGKTSVFYAIEYALFGQQLEVKERVAK 61 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-----NDVVIRVVDE 115 AD+ GS V+G L + KL R + + R ++E Sbjct: 62 LADLIHSGSHEARVALELVDGANVLK-VERKLGKRGAEKLVVVHNGVELRGGEAERRLEE 120 Query: 116 LNK-----HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152 L + R+ ++ F + ++R +F ID Sbjct: 121 LLGVDEDLYERLVYISHRTLEGFIYGTSQKRAISVDRLFGID 162 Score = 38.0 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 39/321 (12%), Positives = 109/321 (33%), Gaps = 30/321 (9%) Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 ++ + + + + AR++ ++ + +K + ++SVR L + I + E + Sbjct: 475 EILQGDAAEYIAAKARLDELKVEREEVVKKVLQAEKSVRQL---EKRIEKLREFFAKVDK 531 Query: 123 SWLVPSMDR---------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173 + ++ R + + R + + + + + L Sbjct: 532 RVISDAVSRYGRAVRIRELRKRVKELEERLRQAGIGGEELEVEVKWREAAAELEKAAARL 591 Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGF 231 E Y + S ++ E + R++ + + E + + L Sbjct: 592 AELYKEKSLLEEAAREVGEEAEGL-KKRLDNVLYAYGRLEELKSRLELAKVSARARLVEV 650 Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291 + +F++ F +L + Y + ++ + ++ S G+ Sbjct: 651 VRSRFNEVFQSLYK-YGDVVKVDAAVEPSRGY------YDFYAISPSGDRYGVSRLSDGQ 703 Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTG 349 + + + + LA + G L+ DE ++D + R A +++T + Q+ + Sbjct: 704 RLSIALSLALALREISQVKLG---FLIFDEPIPYVDVNVRKAFAQLLTSLAGRYQLLVAT 760 Query: 350 TDKSVFDSLNE---TAKFMRI 367 + + + E AK + Sbjct: 761 QSREFAEEVREALPNAKLFTV 781 >gi|29377553|ref|NP_816707.1| chromosome partition protein SMC [Enterococcus faecalis V583] gi|229548051|ref|ZP_04436776.1| SMC structural maintenance of chromosomes partitioning protein [Enterococcus faecalis ATCC 29200] gi|256761075|ref|ZP_05501655.1| chromosome partition protein SMC [Enterococcus faecalis T3] gi|257091336|ref|ZP_05585697.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257417942|ref|ZP_05594936.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257420450|ref|ZP_05597440.1| chromosome partition protein SMC [Enterococcus faecalis X98] gi|307292115|ref|ZP_07571981.1| segregation protein SMC [Enterococcus faecalis TX0411] gi|312902146|ref|ZP_07761406.1| segregation protein SMC [Enterococcus faecalis TX0470] gi|312905398|ref|ZP_07764512.1| segregation protein SMC [Enterococcus faecalis TX0635] gi|28375547|emb|CAD66597.1| SMC protein [Enterococcus faecalis] gi|29345020|gb|AAO82777.1| chromosome partition protein SMC [Enterococcus faecalis V583] gi|229306840|gb|EEN72836.1| SMC structural maintenance of chromosomes partitioning protein [Enterococcus faecalis ATCC 29200] gi|256682326|gb|EEU22021.1| chromosome partition protein SMC [Enterococcus faecalis T3] gi|257000148|gb|EEU86668.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257159770|gb|EEU89730.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257162274|gb|EEU92234.1| chromosome partition protein SMC [Enterococcus faecalis X98] gi|306496768|gb|EFM66319.1| segregation protein SMC [Enterococcus faecalis TX0411] gi|310631127|gb|EFQ14410.1| segregation protein SMC [Enterococcus faecalis TX0635] gi|311290810|gb|EFQ69366.1| segregation protein SMC [Enterococcus faecalis TX0470] gi|315154689|gb|EFT98705.1| segregation protein SMC [Enterococcus faecalis TX0043] gi|315161160|gb|EFU05177.1| segregation protein SMC [Enterococcus faecalis TX0645] gi|315167204|gb|EFU11221.1| segregation protein SMC [Enterococcus faecalis TX1341] gi|315573245|gb|EFU85436.1| segregation protein SMC [Enterococcus faecalis TX0309B] gi|315577148|gb|EFU89339.1| segregation protein SMC [Enterococcus faecalis TX0630] gi|315581181|gb|EFU93372.1| segregation protein SMC [Enterococcus faecalis TX0309A] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|315172943|gb|EFU16960.1| segregation protein SMC [Enterococcus faecalis TX1346] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 39.9 bits (92), Expect = 0.59, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + + L+L K+ +S L EE + Sbjct: 347 AEKMAQRQTLKEALALATKNVEKYSKSSKELMEELRSQ 384 >gi|315164396|gb|EFU08413.1| segregation protein SMC [Enterococcus faecalis TX1302] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + + L+L K+ +S L EE + Sbjct: 347 AEKMAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|295687792|ref|YP_003591485.1| chromosome segregation protein SMC [Caulobacter segnis ATCC 21756] gi|295429695|gb|ADG08867.1| chromosome segregation protein SMC [Caulobacter segnis ATCC 21756] Length = 1147 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 ++ + L +S F+++ + T VG NG GK+N+LEA+ ++ R Sbjct: 1 MQFQRLRLSGFKSFVEPTEFRIEPGLTGIVGPNGCGKSNLLEALRWVMGANSAKAMRAGG 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADISIK-------LETRDDRSVRCLQINDV 108 DV GS + ++ + A + D S +IN Sbjct: 61 MDDVIFAGSGARPPRNHADVALTIDNADRTAPAQFNDDPVLEVVRRIDRGSGSTYKINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145 +R D L P++ R + RRR L+ Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIGAKPQNRRRILE 165 >gi|227517299|ref|ZP_03947348.1| SMC structural maintenance of chromosomes partitioning protein [Enterococcus faecalis TX0104] gi|227075306|gb|EEI13269.1| SMC structural maintenance of chromosomes partitioning protein [Enterococcus faecalis TX0104] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|241957281|ref|XP_002421360.1| DNA repair protein, putative; growth, DNA repair, interchromosomal and sister chromatid recombination protein, putative; structural maintenance of chromosomes (SMC) protein, putative [Candida dubliniensis CD36] gi|223644704|emb|CAX40694.1| DNA repair protein, putative [Candida dubliniensis CD36] Length = 1128 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 4/104 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ L + F + S L Q +G NG GK+ +L IS + R ++ D Sbjct: 106 IEKLTLKNFMCHDSFELKLGPQLNFIIGRNGSGKSAVLTGISVGLGAKATDTNRGSTIRD 165 Query: 64 VTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 + + G S S + + EG + + +R ++ N Sbjct: 166 LIKDGKSTSRITVVLKNEGSDAYKPDVFGKKIIIERKLQRYGSN 209 >gi|70984601|ref|XP_747807.1| structural maintenance of chromosome complex subunit SmcA [Aspergillus fumigatus Af293] gi|66845434|gb|EAL85769.1| structural maintenance of chromosome complex subunit SmcA [Aspergillus fumigatus Af293] gi|159122589|gb|EDP47710.1| structural maintenance of chromosome complex subunit SmcA [Aspergillus fumigatus A1163] Length = 1187 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 75/266 (28%), Gaps = 23/266 (8%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62 I + +++F Y S + + +G NG GK+ ++ AI L G R Sbjct: 109 AIVRIKVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPG 168 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-------VVDE 115 + + G +G + I + + + IN Sbjct: 169 EFVKHGCREASIEIELAKGPGLRKNPVISRTIKREGNKSSFTINGKQASLAQVKKFAQSF 228 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + + +P A P ++L + +L + Sbjct: 229 AIQIDNLCQFLPQDRVSEFAALTPVELLHSTQRAAAGPEMIEWHESLKKLRAEQKKLQLD 288 Query: 176 GYFDSSWCSSIE--AQMAELGVKINIARV------EMINALSSLIMEYVQKENFPHIKLS 227 D +++E +M + V+ R EM+ L +I + K Sbjct: 289 NQSDKDLLANLENRQEMQRVDVERMRQRAQIKRKIEMLEHLRPVIQYREARNELNQKKTE 348 Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFD 253 + + L+ E A L Sbjct: 349 QR-----RLRKELEDLEAELAPALRA 369 >gi|298490236|ref|YP_003720413.1| hypothetical protein Aazo_0883 ['Nostoc azollae' 0708] gi|298232154|gb|ADI63290.1| hypothetical protein Aazo_0883 ['Nostoc azollae' 0708] Length = 79 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 28/46 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 ++I+ L++ FR + L+L +F+G NG GK++IL+ I+ Sbjct: 1 MRIEELHLQNFRGFRELKLDLPPDLAVFIGVNGSGKSSILDRIAIF 46 >gi|257888477|ref|ZP_05668130.1| DNA repair protein RecN [Enterococcus faecium 1,141,733] gi|257897148|ref|ZP_05676801.1| DNA repair protein RecN [Enterococcus faecium Com12] gi|257824531|gb|EEV51463.1| DNA repair protein RecN [Enterococcus faecium 1,141,733] gi|257833713|gb|EEV60134.1| DNA repair protein RecN [Enterococcus faecium Com12] Length = 561 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 6/103 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D Sbjct: 1 MMLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDY 55 Query: 65 TRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 R G+ + EG +++ ++L D ++ + Sbjct: 56 IRQGAEKCILEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 98 >gi|256960444|ref|ZP_05564615.1| chromosome partition protein SMC [Enterococcus faecalis Merz96] gi|293385102|ref|ZP_06630928.1| cell division protein Smc [Enterococcus faecalis R712] gi|293389075|ref|ZP_06633547.1| cell division protein Smc [Enterococcus faecalis S613] gi|312906715|ref|ZP_07765715.1| segregation protein SMC [Enterococcus faecalis DAPTO 512] gi|312910824|ref|ZP_07769660.1| chromosome segregation protein SMC [Enterococcus faecalis DAPTO 516] gi|256950940|gb|EEU67572.1| chromosome partition protein SMC [Enterococcus faecalis Merz96] gi|291077579|gb|EFE14943.1| cell division protein Smc [Enterococcus faecalis R712] gi|291081543|gb|EFE18506.1| cell division protein Smc [Enterococcus faecalis S613] gi|310627363|gb|EFQ10646.1| segregation protein SMC [Enterococcus faecalis DAPTO 512] gi|311288847|gb|EFQ67403.1| chromosome segregation protein SMC [Enterococcus faecalis DAPTO 516] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|221195489|ref|ZP_03568544.1| RecF/RecN/SMC N terminal domain protein [Atopobium rimae ATCC 49626] gi|221184676|gb|EEE17068.1| RecF/RecN/SMC N terminal domain protein [Atopobium rimae ATCC 49626] Length = 472 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 45/286 (15%) Query: 5 IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 +KI L + + ++ L T+ G N GKT++L+AI++ G D Sbjct: 3 VKISSLELENVKRIRAVELEPTKDGLTVIGGKNAQGKTSVLDAIAWALGGDKL---KPDD 59 Query: 64 VTRIGSPSFFSTFARVE--------GMEGLADISIKLETRDDRSVRCLQI---------- 105 R G + ++ G G ++ + + + + + Sbjct: 60 PNRKGGATPAKLHIELDNGVVVERKGKNGSLHVTDTMGKKAGQQLLNDFVSQLALNIPRF 119 Query: 106 -NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID----PRHRRRMI 160 N L + L I + R F DR + D H ++ Sbjct: 120 MNGSDADKATALLQTLGI------DAELAKIDGSIRATFQDRQLVGRDAKSKRAHAEKLP 173 Query: 161 DFE----------RLMRGRNRLLTEG--YFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 ++ L++ + +LT + + A+ A L + VE ++ L Sbjct: 174 HYDDAPEEPVSASELIQEQQAILTRNGEKLKAKQNAEETARKATLADEAAKTAVERVDEL 233 Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 + E K N + ++S ++ E +++ Sbjct: 234 KRQLKEAEAKANNLRLDAIQAHHDAEVLEKSTAEIELESTEEIEAS 279 >gi|125717534|ref|YP_001034667.1| DNA repair and genetic recombination [Streptococcus sanguinis SK36] gi|125497451|gb|ABN44117.1| DNA repair and genetic recombination, putative [Streptococcus sanguinis SK36] gi|327473377|gb|EGF18797.1| DNA repair protein RecN [Streptococcus sanguinis SK408] Length = 552 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P +G E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMRGR 169 + + D+ LD A + R++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQVHIAMLDEFGSADFLNLKGRYQETFDRYRSLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L + +E QMAE+ ++ R ++N Sbjct: 176 LILQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221 >gi|299148668|ref|ZP_07041730.1| hypothetical protein HMPREF9010_02947 [Bacteroides sp. 3_1_23] gi|298513429|gb|EFI37316.1| hypothetical protein HMPREF9010_02947 [Bacteroides sp. 3_1_23] Length = 732 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 26/43 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 +KI+ ++I +R + + FD + T+ VG N GKT+ + AI Sbjct: 1 MKIQSVHIRNYRKLKNCHIDFDEKKTVLVGANNSGKTSAISAI 43 >gi|301108952|ref|XP_002903557.1| structural maintenance of chromosomes protein 6, putative [Phytophthora infestans T30-4] gi|262097281|gb|EEY55333.1| structural maintenance of chromosomes protein 6, putative [Phytophthora infestans T30-4] Length = 1119 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRG-FRRASYAD 63 ++ + F + LR+ G+NG GK+ I+ AI + R R S + Sbjct: 78 VEEIYCENFMCHRKLRVSLCPHINFITGENGSGKSAIIAAIQICLGASARSTHRGKSIKN 137 Query: 64 VTRIGSPS 71 + R G Sbjct: 138 LIRHGHEG 145 >gi|257417225|ref|ZP_05594219.1| chromosome partition protein SMC [Enterococcus faecalis AR01/DG] gi|257159053|gb|EEU89013.1| chromosome partition protein SMC [Enterococcus faecalis ARO1/DG] gi|315146606|gb|EFT90622.1| segregation protein SMC [Enterococcus faecalis TX4244] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|255974284|ref|ZP_05424870.1| chromosome partition protein SMC [Enterococcus faecalis T2] gi|307284871|ref|ZP_07565027.1| segregation protein SMC [Enterococcus faecalis TX0860] gi|255967156|gb|EET97778.1| chromosome partition protein SMC [Enterococcus faecalis T2] gi|306503130|gb|EFM72387.1| segregation protein SMC [Enterococcus faecalis TX0860] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|300861663|ref|ZP_07107747.1| chromosome segregation protein SMC [Enterococcus faecalis TUSoD Ef11] gi|300849124|gb|EFK76877.1| chromosome segregation protein SMC [Enterococcus faecalis TUSoD Ef11] gi|315145469|gb|EFT89485.1| segregation protein SMC [Enterococcus faecalis TX2141] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|167044939|gb|ABZ09605.1| putative RecF/RecN/SMC N terminal domain protein [uncultured marine microorganism HF4000_APKG8D23] Length = 1302 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++ + + F+++A + + + T G NG GK+N L+AI F+ + R A+ Sbjct: 1 MRLLRMELENFKSFAGEVTIPLEEGFTAITGPNGSGKSNSLDAIQFVLGPKSTKSIRAAN 60 Query: 61 YADVTRIGSPSF 72 + G Sbjct: 61 VTQLIFNGGKRG 72 >gi|56479200|ref|YP_160789.1| hypothetical protein ebA6581 [Aromatoleum aromaticum EbN1] gi|56315243|emb|CAI09888.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 608 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 60/384 (15%), Positives = 120/384 (31%), Gaps = 53/384 (13%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRAS--- 60 +++ L+I FR A+ L F HT+ +G N VGK+ I EA+ L P R R Sbjct: 1 MRVSRLSIENFRGIANAVLHFS-GHTLLIGGNNVGKSTICEALDLVLGPDRLNRTPPVEE 59 Query: 61 -YADVTRIGSPSFFSTF-ARVEGMEGLADISIK------LETRDDRSVRCLQINDVVIRV 112 + + R+E + IK LE R L ++ Sbjct: 60 FDFRNANYLADDGETIVPLRIEAILVDLTDDIKTLCAANLEFWHTSEKRLLTEGEIAAAD 119 Query: 113 VDELNKHLRISWL----VPSMDRIFS--------GLSMERRRFLDRMVFAIDPRHRRRMI 160 ++ LR+ + + + E + R+ AI + R + Sbjct: 120 DPQVELCLRLVTVGRYDIDEDQFVARTIYGRTNEEPDEEPKSIPTRVKRAIGFLYLRTIR 179 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220 R + L G + +M E + + + + L+ I + Sbjct: 180 TGSRAL-----SLERGTLLDNIL-----RMKEARKGMWESIRKRLAVLNPPIDADATELG 229 Query: 221 --FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 I+ L ++ + L + +L +++ +G + Sbjct: 230 PVLDEIEARLAEYIAPSGEGRSTRL---FVSQLTREHLRKTIAFFLTMGQGEA------- 279 Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 A+ TG +++ + I++ I ++E L + + + Sbjct: 280 --AVPFQQSGTGTLNTLVLAL----LTFIADLKKDNVIFAMEEPEIALPPHTQRRIANYL 333 Query: 339 TDIGSQIFMTGTDKSVFDSLNETA 362 + SQ F+T V + Sbjct: 334 LEETSQCFVTSHSPYVIERFEPEG 357 >gi|46447121|ref|YP_008486.1| putative chromosome segregation SMC protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400762|emb|CAF24211.1| putative chromosome segregation SMC protein [Candidatus Protochlamydia amoebophila UWE25] Length = 1179 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 96/268 (35%), Gaps = 34/268 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L F+++A L FD T VG NG GK+NI +A ++ + R Sbjct: 1 MRLKKLMAVGFKSFADKTVLNFDRGITCIVGPNGCGKSNIADAFRWVLGEQSAKSMRGHK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ G+ +F + ++G I I L R RS IN ++R Sbjct: 61 MPDIIFAGTNHRRPLNFAEVSLTLTEVQGALPIDYEEITLTRRLHRSGESEYFINGNLVR 120 Query: 112 VVDELN-----KHLRISWLVPS---MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D R ++ + +D++ + +ERR Sbjct: 121 LKDIQGLFLDSGVGRNAFSIFEQGKLDQVINYTPLERR-----------HIFEEAAGILR 169 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 L R R L D ++ + + E+G +I +V+ AL Q E+F Sbjct: 170 FLQRKREALKRLEQADLNFSRVNDIHL-EVGKQIEALQVQAKKALQ-FKESKTQLESFEK 227 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKL 251 L K +E+ ++L Sbjct: 228 TSYLLRWEGIEKKKTDVNQKQEKQKERL 255 >gi|315151033|gb|EFT95049.1| segregation protein SMC [Enterococcus faecalis TX0012] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|229547476|ref|ZP_04436201.1| SMC structural maintenance of chromosomes partitioning protein [Enterococcus faecalis TX1322] gi|256854771|ref|ZP_05560135.1| chromosome partition protein SMC [Enterococcus faecalis T8] gi|229307400|gb|EEN73387.1| SMC structural maintenance of chromosomes partitioning protein [Enterococcus faecalis TX1322] gi|256710331|gb|EEU25375.1| chromosome partition protein SMC [Enterococcus faecalis T8] gi|315028378|gb|EFT40310.1| segregation protein SMC [Enterococcus faecalis TX4000] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I+ F+++A + F+ T VG NG GK+NI EA+ L + R Sbjct: 1 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS + ++ + + I + R R+ IN R Sbjct: 61 MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K ++ IF+ +RR + + +++R E Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 + + L+ +E Q+ L + Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208 Score = 40.3 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ++++ ++ +N L+ S S E +AE KI R E + L + I Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346 Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 E + L+L K+ +S L EE + Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384 >gi|149914538|ref|ZP_01903068.1| DNA repair protein RecN [Roseobacter sp. AzwK-3b] gi|149811331|gb|EDM71166.1| DNA repair protein RecN [Roseobacter sp. AzwK-3b] Length = 549 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 90/291 (30%), Gaps = 37/291 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I + L L F + G+ G GK+ +L+++ F+ RG A++ R Sbjct: 2 LRALDIRDILIIDHLELAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56 Query: 67 IGSPSFFST------------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--V 112 G+ ++ D I + +ND V Sbjct: 57 QGADQGEVVAEFDLPKDHPARAVLLDAGLPEEDQLILRRVNTSDGRKTAWVNDRRCSGEV 116 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR-----RRMIDFERLMR 167 + L+ L + R LD D + R R + + +++ Sbjct: 117 LRRLSDTLVELHGQHDDRGLL--DPKGHRALLDAFGALNDLKSRTRTAWRAVAEAGKVLS 174 Query: 168 GRNRLLTEGYFDSSW-------CSSIEAQMAELGVKINIARV-EMINALSSLIMEYVQKE 219 L E + + +++ Q E R+ + + I+ Sbjct: 175 RAEAALQEVRTEEEFLRHAVTELDTLDPQPGEDDALDARRRLMQQAERIREDILRAQAAL 234 Query: 220 NFPHIKLSLTG---FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267 F + + +L+G D++ L E A ++D ++ Sbjct: 235 GFEGAEGAAGDALRWLEGVADRAEGQLDEPIAALSRAMVELDEAAQGVTRC 285 >gi|108863044|gb|ABA99633.2| RecF/RecN/SMC N terminal domain containing protein, expressed [Oryza sativa Japonica Group] Length = 573 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 +I L + F++Y + + T +G NG GK+N+++AISF+ R R A Sbjct: 15 RIHRLEVENFKSYKGTQTIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLK 74 Query: 63 DVT 65 D+ Sbjct: 75 DLI 77 >gi|83814851|ref|YP_445024.1| chromosome segregation protein SMC [Salinibacter ruber DSM 13855] gi|83756245|gb|ABC44358.1| chromosome segregation protein SMC [Salinibacter ruber DSM 13855] Length = 1186 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 30/217 (13%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60 + + L + F+++A L FD T VG NG GK+NI++AI + R R Sbjct: 1 MYLSKLELQGFKSFADETTLTFDPGVTTIVGPNGCGKSNIVDAIRWVIGEQRPTVLRSEK 60 Query: 61 YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--------NDVVIR 111 ++ G + A VE D + E + R L N R Sbjct: 61 MENLIFNGTADRRPLGMAEVELTIENTDGVLPTEYAEVTIGRRLFRDGTSEYLMNGTTCR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + + + D + SG + +RRR + + ++ Sbjct: 121 LKDITDLFMDTGMAADAYSVIELKMVDELVSGSTEDRRRMFEE---------AAGITRYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 R R L D + +++ ++ Sbjct: 172 MRRRQALRKLDGTQSDLERIRDLTDEVSTQVERLERQ 208 >gi|55378409|ref|YP_136259.1| chromosome segregation protein [Haloarcula marismortui ATCC 43049] gi|55231134|gb|AAV46553.1| chromosome segregation protein [Haloarcula marismortui ATCC 43049] Length = 1195 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK L + F+++ R+ F T G NG GK+NI++AI F L+ G R Sbjct: 1 MHIKELVLDNFKSFGRKTRIPFYEDFTTISGPNGSGKSNIIDAILFALGLARTSGIRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 D+ +P A +G E A + + L D R +N Sbjct: 61 LTDLIY--NPGHADEDAEYDG-ERQASVEVILANDDRTLSRSQVVN 103 >gi|283779090|ref|YP_003369845.1| chromosome segregation protein SMC [Pirellula staleyi DSM 6068] gi|283437543|gb|ADB15985.1| chromosome segregation protein SMC [Pirellula staleyi DSM 6068] Length = 1215 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 62/369 (16%), Positives = 121/369 (32%), Gaps = 62/369 (16%) Query: 7 IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62 +K L + F+++A F A T+ VG NG GK+NI++ I L + R A Sbjct: 2 LKALELHGFKSFADKTRFEFPAGITVIVGPNGSGKSNIVDGIKWVLGEQSAKSLRGKDMA 61 Query: 63 DVTRIG------SPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIRV 112 DV G + + EG I + + R RS IN R+ Sbjct: 62 DVIFKGSGSGRKAAQAAEATLVFDNSEGRLPIDAPEVHITRRVFRSGEGEYLINRQPARL 121 Query: 113 VD--ELNKHLRISWLVPSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 D ++ + + SM DR+ + +RR + + F+ Sbjct: 122 KDIRDMVRGTGVGVDAYSMIEQGKVDRLLQASAKDRRAIFEE---------AAGISRFKA 172 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 R L D + +++++ +++ AR++ + ++ Y + Sbjct: 173 KKIEAQRRLER--VDQNLL-----RLSDIVEEVD-ARLKTVRNQAAKARRYRE------- 217 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAIT 283 + Q + +KL + + ++ + +L+V + + I Sbjct: 218 -------YSTRLQQLRTQTAQVDWRKLAEQLEA-ITAKVATFTSEKEELVVRVQELEQIV 269 Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343 S + + A A+ S A E +A + Sbjct: 270 AGSASQSQN--AATALRTAEAKQASLREQIAQ----QESAADFHRQTSKQQAEAAREQQQ 323 Query: 344 QIFMTGTDK 352 Q +T TD+ Sbjct: 324 Q-LVTMTDR 331 >gi|227875614|ref|ZP_03993753.1| possible DNA repair protein RecN [Mobiluncus mulieris ATCC 35243] gi|227843799|gb|EEJ53969.1| possible DNA repair protein RecN [Mobiluncus mulieris ATCC 35243] Length = 578 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 92/306 (30%), Gaps = 37/306 (12%) Query: 2 TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 T + I+ L I + L F T+ G+ G GKT +L ++++L G R + Sbjct: 3 TPEM-IESLRIENLGTISHAELGFSPGFTVITGETGAGKTMLLTSLNWL-LGAQPRAS-- 58 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL- 120 + GS S + A + +D V +I R L Sbjct: 59 --LVAAGSESAVVEGTFLVDASAAAVVMEAGGVVEDGVVEAARIVPAQSRSKAHLGGRTV 116 Query: 121 --RISWLVPSMDRIFSGLSMERRRFLDRMVFAID-------PRHRRRMIDFERLMRGRNR 171 + G + + R L + H+ + + + Sbjct: 117 PAATLGTFGADLVSVHGQATQSR--LRGEKAQREAVDEFGGKTHQAALQTYAKA------ 168 Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTG 230 E + E + R E++ LS ++ F + +++ Sbjct: 169 -WEEWGAATKDLEIWEENF-----ETRQRRREVLEHLSEEFQALAPEDGEFEELTATISR 222 Query: 231 FLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285 + + + AL E+ ++ +D R + + D D + + Sbjct: 223 LSNVENLRENATAALVALDEDSEMQVGANALVDIALRAMEKVTQQDGSLADLADMVASAS 282 Query: 286 HGSTGE 291 + S GE Sbjct: 283 Y-SLGE 287 >gi|66045061|ref|YP_234902.1| SMC protein, N-terminal:structural maintenance of chromosome protein SMC, C-terminal:SMCs flexible hinge [Pseudomonas syringae pv. syringae B728a] gi|63255768|gb|AAY36864.1| SMC protein, N-terminal:Structural maintenance of chromosome protein SMC, C-terminal:SMCs flexible hinge [Pseudomonas syringae pv. syringae B728a] Length = 1162 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 DV GS S S + +G A+ISI+ + D +N Sbjct: 61 MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158 R D + + L P I + R F++ Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + ++ R + + + + + + ++ +++ E K Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 ++ L G+ + + + + D R D+ R G H DL + Sbjct: 230 AQLSALRWQALNDLVGQREAVISNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287 Query: 279 ---------DKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314 >gi|294506894|ref|YP_003570952.1| Chromosome segregation protein SMC [Salinibacter ruber M8] gi|294343222|emb|CBH24000.1| Chromosome segregation protein SMC [Salinibacter ruber M8] Length = 1186 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 30/217 (13%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60 + + L + F+++A L FD T VG NG GK+NI++AI + R R Sbjct: 1 MYLSKLELQGFKSFADETTLTFDPGVTTIVGPNGCGKSNIVDAIRWVIGEQRPTVLRSEK 60 Query: 61 YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--------NDVVIR 111 ++ G + A VE D + E + R L N R Sbjct: 61 MENLIFNGTADRRPLGMAEVELTIENTDGVLPTEYAEVTIGRRLFRDGTSEYLMNGTTCR 120 Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D + + + D + SG + +RRR + + ++ Sbjct: 121 LKDITDLFMDTGMAADAYSVIELKMVDELVSGSTEDRRRMFEE---------AAGITRYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 R R L D + +++ ++ Sbjct: 172 MRRRQALRKLDGTQSDLERIRDLTDEVSTQVERLERQ 208 >gi|68483159|ref|XP_714514.1| potential nuclear condensin complex SMC ATPase [Candida albicans SC5314] gi|68483260|ref|XP_714465.1| potential nuclear condensin complex SMC ATPase [Candida albicans SC5314] gi|46436033|gb|EAK95403.1| potential nuclear condensin complex SMC ATPase [Candida albicans SC5314] gi|46436089|gb|EAK95458.1| potential nuclear condensin complex SMC ATPase [Candida albicans SC5314] Length = 1171 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K+ L I F++YA + +DAQ G NG GK+NIL+AI F+ R + Sbjct: 1 MKVDELIIDGFKSYAVRTVISNWDAQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E IS+ + + + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFNNSEVSKSPIGFENCPTISVTRQIILGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + LN + + + + + Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148 >gi|330836477|ref|YP_004411118.1| SMC domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748380|gb|AEC01736.1| SMC domain protein [Spirochaeta coccoides DSM 17374] Length = 948 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 79/242 (32%), Gaps = 47/242 (19%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L + F+++A +L F T +G NG GK+NI+++I L + R + Sbjct: 1 MFLKTLEMIGFKSFADKTKLDFADGITCLLGPNGCGKSNIVDSIKWVLGEQSTKALRASR 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVI- 110 DV G+ + F + EG I +++ R R+ IN Sbjct: 61 MDDVIFNGTDNRKPMGFAEVSLTISNEEGHLAIDAPEVEIRRRVYRNGNAEYYINRSPAL 120 Query: 111 -RVVDEL----------------NKHLRISWLVPSMDRIFSGLSMERRRFLDRM------ 147 + + EL K +I P R + RF +M Sbjct: 121 LKNIKELFLDTGVGKSAYSILEQGKIDQILSHKPEDRRYIFEEAAGISRFKTQMNEAQRK 180 Query: 148 -------VFAIDPRHRRRMIDF--ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198 + +D + + R + E + + Q++ L + Sbjct: 181 LERTMENLEQVDAIFTEAKRTYTLRKGQAERVVIFKELEKQKTLLEV-DTQLSTLKSYLL 239 Query: 199 IA 200 + Sbjct: 240 LK 241 >gi|325697439|gb|EGD39325.1| RecF/RecN/SMC N domain protein [Streptococcus sanguinis SK160] Length = 899 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 +KIK + + F+N+ + F T VG NG GKT I +AI G Sbjct: 1 MKIKKILLYNFKNFRQKTIIDFSKDITFLVGPNGFGKTTIFDAIELGLTG 50 >gi|291559018|emb|CBL37818.1| condensin subunit Smc [butyrate-producing bacterium SSC/2] Length = 1185 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 28/220 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K + ++ F+++A + F+ T VG NG GK+N+ +A+ ++ + R + Sbjct: 1 MYLKSIEVNGFKSFAHKMIFKFEHGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGSR 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111 DV G+ ++ + I + T R R IN R Sbjct: 61 MEDVIFSGTELRKPMGSAYVAITLDNSDHSLPIQFEEVTVARRVYRSGESEYLINGSACR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 D + K +++I SG ERR D + +++ ++ + Sbjct: 121 RKDIVELFFDTGIGKEGYSIIGQGQIEQILSGKPEERRELFDEAAGIVK--YKKNKLETQ 178 Query: 164 RLMR-GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202 + + R L+ + + +E Q+ L + AR Sbjct: 179 KSLEIERENLVRV----TDILTELERQVGPLKKQSERARE 214 >gi|218263846|ref|ZP_03477815.1| hypothetical protein PRABACTJOHN_03505 [Parabacteroides johnsonii DSM 18315] gi|218222445|gb|EEC95095.1| hypothetical protein PRABACTJOHN_03505 [Parabacteroides johnsonii DSM 18315] Length = 239 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47 ++I ++I FR + R+ F+ TIFVG N GKT+ + AI Sbjct: 1 MRIDHIHIRNFRKLKNCRIDFNKDQTIFVGANNSGKTSAMSAI 43 >gi|47086417|ref|NP_997975.1| structural maintenance of chromosomes 1A, like [Danio rerio] gi|44890312|gb|AAH66674.1| Structural maintenance of chromosomes 1A [Danio rerio] Length = 285 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 21/177 (11%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63 +K + I F++Y + + T +G NG GK+N+++AISF+ + R + D Sbjct: 4 LKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKTLKD 63 Query: 64 VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111 + G+P +F + + +G + L+ I + E R + V L + Sbjct: 64 LI-HGAPVGKPAANRAFVTMVYQQDGGQELSFSRIIIGSSSEYRINNKVVGLSDYSEELE 122 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + L K +++ I ER + + R +++R + Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFEEI-----SRSGELAQEYDRCKKE 174 >gi|12045154|ref|NP_072965.1| chromosome segregation protein SMC [Mycoplasma genitalium G37] gi|1709512|sp|P47540|P115_MYCGE RecName: Full=Protein P115 homolog gi|1045996|gb|AAC71520.1| chromosome segregation protein SMC [Mycoplasma genitalium G37] gi|166079082|gb|ABY79700.1| chromosome segregation protein SMC [synthetic Mycoplasma genitalium JCVI-1.0] Length = 982 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 26/185 (14%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62 +K F++YA + + F T VG NG GK+N+++A+ ++ R R S Sbjct: 4 LKRFRAYGFKSYADEITIDFTHSMTGIVGPNGSGKSNVVDALKWVLGERSMKHLRSKSGD 63 Query: 63 DVTRIGSPS-FFSTFARVE---------GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 D+ GS S A +E + +IS+ IN Sbjct: 64 DMIFFGSKDKPASKLAEIELTFDNSNRLLHDSRKEISVMRRVYRGSGQSEYFINSNPA-T 122 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRMID 161 + E++ L I S ERR+ + + R + Sbjct: 123 LKEISGIFADIGLEKGSLGIISQGSVSWFVEAKPEERRKIFEDASGIGRYTKRKEEVVNQ 182 Query: 162 FERLM 166 R + Sbjct: 183 LNRTL 187 >gi|330834081|ref|YP_004408809.1| ATPase-like protein [Metallosphaera cuprina Ar-4] gi|329566220|gb|AEB94325.1| ATPase-like protein [Metallosphaera cuprina Ar-4] Length = 494 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 23/45 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 +++ S F++ S+ L + VG NG GKTN+L +I Sbjct: 1 MRLTEFYTSNFKSLESVELREMGGFNVIVGFNGYGKTNLLTSIYL 45 >gi|325694098|gb|EGD36016.1| DNA repair protein RecN [Streptococcus sanguinis SK150] Length = 552 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P +G E ++ I+ E +IN ++ + Sbjct: 57 HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169 + + D+ LD + R++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLNLKGRYQETFDRYRSLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L S +E QMAE+ ++ R ++N Sbjct: 176 LTLQKNQQEHKSRIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221 >gi|209524198|ref|ZP_03272748.1| SMC domain protein [Arthrospira maxima CS-328] gi|209495289|gb|EDZ95594.1| SMC domain protein [Arthrospira maxima CS-328] Length = 435 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 I + + +F++Y S L + T+ +G N GK+N++EA+ LS Sbjct: 2 ITEIELKDFKSYKSATLHLG-RLTVLIGANASGKSNVIEALRLLSRL 47 >gi|328876060|gb|EGG24424.1| structural maintenance of chromosome protein [Dictyostelium fasciculatum] Length = 1957 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 15/111 (13%) Query: 7 IKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAISF-------LSPGRGF 56 IK + I F++Y L L F + G NG GK+N+ AI F LS G+ Sbjct: 545 IKLIKIEGFKSYKHLDLSSTSFSPGFNVITGRNGSGKSNLFAAIRFLLGDWSNLSLGKEE 604 Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 R VE + +D ++ ++ R + +N Sbjct: 605 RSKLL-----HSFGGTAVHSGYVEVLFDNSDGRFPIQKKEFTLKRSVFVNK 650 Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340 +T+ S G++ +V + + A T AP LLDEI A LD R ++ R++ Sbjct: 1632 PLTMHQLSGGQKTLVALALIFAL-----QRTDPAPFYLLDEIDAALDHQYRISVSRLIRK 1686 Query: 341 --IGSQIFMTG 349 +Q T Sbjct: 1687 HSKFTQFIATT 1697 >gi|312213375|emb|CBX93457.1| similar to structural maintenance of chromosomes protein 5 [Leptosphaeria maculans] Length = 1143 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 71/214 (33%), Gaps = 14/214 (6%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64 + + + F Y + + + +G NG GK+ ++ AI D+ Sbjct: 80 LIRVKLKNFVTYTAAEFLLGPSLNMIIGPNGTGKSTLVCAICLGLGWGSEHLGRAKDLGA 139 Query: 65 -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDELNKHLR 121 + G+ +G + I+ R + + +N VV + K L Sbjct: 140 FVKHGATEAEIEIELAKGPGMKRNPVIQRLIRKEDNKSFFTLNGKRTAQNVVTAMCKGLS 199 Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR-GRNRLLTE 175 I +P + E R + A P + D +++R L T+ Sbjct: 200 IQIDNLCQFLPQDRVVEFSRLSEVDRLRETQ-RAAAPAYMVDWHDQLKVLRAEEKALETK 258 Query: 176 GYFDSSWCSSIEAQ--MAELGVKINIARVEMINA 207 + + + S +EAQ V+ R E++ Sbjct: 259 QHNEKTHLSKLEAQQNATRDDVERWHQREELLQK 292 >gi|257879358|ref|ZP_05659011.1| DNA repair protein RecN [Enterococcus faecium 1,230,933] gi|257881776|ref|ZP_05661429.1| DNA repair protein RecN [Enterococcus faecium 1,231,502] gi|257885170|ref|ZP_05664823.1| DNA repair protein RecN [Enterococcus faecium 1,231,501] gi|257890184|ref|ZP_05669837.1| DNA repair protein RecN [Enterococcus faecium 1,231,410] gi|257893512|ref|ZP_05673165.1| DNA repair protein RecN [Enterococcus faecium 1,231,408] gi|260558800|ref|ZP_05830989.1| DNA repair protein RecN [Enterococcus faecium C68] gi|261206510|ref|ZP_05921210.1| DNA repair protein RecN [Enterococcus faecium TC 6] gi|257813586|gb|EEV42344.1| DNA repair protein RecN [Enterococcus faecium 1,230,933] gi|257817434|gb|EEV44762.1| DNA repair protein RecN [Enterococcus faecium 1,231,502] gi|257821022|gb|EEV48156.1| DNA repair protein RecN [Enterococcus faecium 1,231,501] gi|257826544|gb|EEV53170.1| DNA repair protein RecN [Enterococcus faecium 1,231,410] gi|257829891|gb|EEV56498.1| DNA repair protein RecN [Enterococcus faecium 1,231,408] gi|260075259|gb|EEW63572.1| DNA repair protein RecN [Enterococcus faecium C68] gi|260079220|gb|EEW66911.1| DNA repair protein RecN [Enterococcus faecium TC 6] Length = 561 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 6/103 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D Sbjct: 1 MMLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDY 55 Query: 65 TRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 R G+ + EG +++ ++L D ++ + Sbjct: 56 IRQGAEKCVLEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 98 >gi|218778640|ref|YP_002429958.1| chromosome segregation protein SMC [Desulfatibacillum alkenivorans AK-01] gi|218760024|gb|ACL02490.1| chromosome segregation protein SMC [Desulfatibacillum alkenivorans AK-01] Length = 1191 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +K+K L + F+++ + F + VG NG GK+NI++AI +++ R R S Sbjct: 1 MKLKQLELCGFKSFPDKTTIPFPGGVSAVVGPNGCGKSNIVDAIQWVTGEQRARQLRGKS 60 Query: 61 YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRD-----------DRSVRCLQINDV 108 DV GS S A V + S E RD R IN Sbjct: 61 MEDVIFSGSKSRPPVNMAEVSITFANDNGSCPEEYRDFSEIMVTRRLFRSGERGYFINKQ 120 Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 R+ D + ++ I ERR F++ Sbjct: 121 PCRLKDIQNLLMGSGIGAGTYAVIQQGNLGAITEAGPDERRIFIE 165 >gi|327439763|dbj|BAK16128.1| ATPase [Solibacillus silvestris StLB046] Length = 563 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 18/233 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I F L + F T+ G+ G GK+ I++A++ L+ GRG + R Sbjct: 2 LRELSIRNFAIIDDLTVSFFGGLTVLTGETGAGKSIIIDAVNILAGGRG-----STEFIR 56 Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126 G I KLE S I + + + + Sbjct: 57 HGEKKA-ELGGLFHVDNSQHPIFAKLEEHGIESEEDTIILRRDLHDSGKSVCRVNGKLVP 115 Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW--CS 184 S+ R G ++ + + H + + + +D ++ Sbjct: 116 LSVLRDIGGSLIDIHGQHENQELMDEKFHINLLDHYAHNKLQ----PVKARYDEAFEAYR 171 Query: 185 SIEAQMAELG--VKINIARVEM----INALSSLIMEYVQKENFPHIKLSLTGF 231 ++ ++AEL + R+++ I L ++ ++E +L L F Sbjct: 172 QLKREVAELSMDEQRMAQRIDLYQFQIQELEQAGLKVDEEEALDEERLRLMNF 224 >gi|327285298|ref|XP_003227371.1| PREDICTED: structural maintenance of chromosomes protein 2-like [Anolis carolinensis] Length = 1202 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 18/123 (14%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++YA FD G NG GK+NIL++I FL + R + Sbjct: 1 MYIKSIVLEGFKSYAQRTEVNDFDPLFNAITGLNGSGKSNILDSICFLLGITNLSQVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E +I++ + + L IN Sbjct: 61 NLQDLVYKNGQAGITKATVSITFDNFDKKQSPLGFENHDEITVTRQVVIGGRNKYL-ING 119 Query: 108 VVI 110 V Sbjct: 120 VNA 122 >gi|320323493|gb|EFW79578.1| chromosome segregation protein SMC [Pseudomonas syringae pv. glycinea str. B076] gi|320329464|gb|EFW85456.1| chromosome segregation protein SMC [Pseudomonas syringae pv. glycinea str. race 4] Length = 1162 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 DV GS S S + +G A+ISI+ + D +N Sbjct: 61 MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158 R D + + L P I + R F++ Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + ++ R + + + + + + ++ +++ E K Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 ++ L G+ + + + + D R D+ R G H DL + Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEIGFEALVADQRSADASIERLRDGHH--DLSERFN 287 Query: 279 ---------DKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314 >gi|300707494|ref|XP_002995952.1| hypothetical protein NCER_101026 [Nosema ceranae BRL01] gi|239605199|gb|EEQ82281.1| hypothetical protein NCER_101026 [Nosema ceranae BRL01] Length = 1045 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I L ++ F+ + S R+ F +G NG GK+ I A+S + G + + + Sbjct: 12 IISLYLTNFQTFKSSRIRFSPSLNFIIGPNGSGKSTISNALSLIFGGTPKTIGKTKNLKE 71 Query: 64 VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 R G+ EG I + + +N +++ Sbjct: 72 YIRFGAHDCKIEAEVFYEGEIYKIGRGISI------ANNFWYVNGEIVKK 115 >gi|238883729|gb|EEQ47367.1| structural maintenance of chromosome 2 [Candida albicans WO-1] Length = 1171 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 18/149 (12%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 +K+ L I F++YA + +DAQ G NG GK+NIL+AI F+ R + Sbjct: 1 MKVDELIIDGFKSYAVRTVISNWDAQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 + D+ + G + G E IS+ + + + L IN Sbjct: 61 NLQDLIYKRGQAGVTKASVTIVFNNSEVSKSPIGFENCPTISVTRQIILGGTSKYL-ING 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136 + LN + + + + + Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148 >gi|227530533|ref|ZP_03960582.1| DNA repair protein RecN [Lactobacillus vaginalis ATCC 49540] gi|227349539|gb|EEJ39830.1| DNA repair protein RecN [Lactobacillus vaginalis ATCC 49540] Length = 560 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 19/196 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I L L F Q T+ G+ G GK+ I++A+ L+ GRG + R Sbjct: 2 LQELTIDNLAIIKHLSLDFSDQMTVLTGETGAGKSIIIDAVGLLAGGRG-----SQEYIR 56 Query: 67 IGSP--SFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+ S FA + G++ I I R +++N +I Sbjct: 57 RGADKLSLQGQFALPQDPEFNHLLDSLGIDHEDGILIISREIYRRGRNVIRVNGQLINTA 116 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRNRL 172 R+ + + LD+ + R D ++ ++ + + Sbjct: 117 TLRQIGSRLVDIQGQNEHQLLLQPEMHLGMLDQFAHNEVHKLLTRYQDEYQNYVKLKAAV 176 Query: 173 LTEGYFDSSWCSSIEA 188 + + W ++ Sbjct: 177 SKKQNNEQQWAQRLDM 192 >gi|261854789|ref|YP_003262072.1| chromosome segregation protein SMC [Halothiobacillus neapolitanus c2] gi|261835258|gb|ACX95025.1| chromosome segregation protein SMC [Halothiobacillus neapolitanus c2] Length = 1167 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 16/126 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L ++ F+++A+ ++ A+ VG NG GK+N+++AI ++ S + R S Sbjct: 1 MRLTRLYLAGFKSFAAPTEILLPAERVAIVGPNGCGKSNLIDAIRWVLGESSAKQLRGQS 60 Query: 61 YADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108 DV GS SF ++ R+ G G D + + IN Sbjct: 61 LDDVIFAGSGQRPAASQAVVELSFDNSARRLSGPFGAYDQIVICRSLGRDGQSRYSINQT 120 Query: 109 VIRVVD 114 +R D Sbjct: 121 RVRRRD 126 >gi|187921121|ref|YP_001890153.1| OLD family ATP-dependent endonuclease [Burkholderia phytofirmans PsJN] gi|187719559|gb|ACD20782.1| ATP-dependent endonuclease, OLD family [Burkholderia phytofirmans PsJN] Length = 762 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 13/119 (10%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ L I FR + + +IFVG N GKT+ A+ G+G Sbjct: 1 MHLQKLGIRNFRRLRDVVIDLAPDISIFVGANNSGKTSAGHALQLF-TGKGRFTLHD--- 56 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + A EG+ G ++ ++ L I+ I V +L L Sbjct: 57 --FSAELWPQFVAFGEGVAGATLPTMSIDI-------WLHIDGTDIHRVIDLLPSLAWQ 106 >gi|240274239|gb|EER37756.1| DNA repair protein RAD18 [Ajellomyces capsulatus H143] Length = 1148 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 48/335 (14%), Positives = 95/335 (28%), Gaps = 68/335 (20%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ ++ F + + VG NG GK+ IL A++ G+ R S Sbjct: 121 IERVDCYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTALTLCLGGKASVTNRGQSLKS 180 Query: 64 VTRIGSPSFFSTFARVEGMEGLAD----------ISIKLETRDDRSVRCL----QINDVV 109 + G S + R++ A I + ++ Sbjct: 181 FIKEGKDSA-TIVVRIKNQGDSAYNPNEFGNSIIIERHFSRNGSSGFKIKSSSGRVVSTK 239 Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR--- 156 +D + + + P + + S E+ +F + +D +R Sbjct: 240 KSELDSITDYFALQIDNPMNVLSQDMARQFLSSSSPSEKYKFFVKGVQLEQLDQDYRLLE 299 Query: 157 ------------------------------RRMIDFERLMRGRNRLLT------EGYFDS 180 + D MR R R L + Sbjct: 300 ESIDQTEAKLSIHLDQIKDLETNRNNARAKLALSDKNETMRARVRNLRAQMAWVQVEEQE 359 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + +AQ+AE KI E+ A + L+ L+ + D+ Sbjct: 360 KNRDAYDAQLAEATRKIADLESEVAKADELYQSADREYGIAAEAVLAAKSELEAQADRGK 419 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 A KE + + + R++ + R ++ + Sbjct: 420 VA-KESMNEIVKERRELQATQRTIRECLKTAESAI 453 >gi|87310422|ref|ZP_01092552.1| chromosome partition protein Smc [Blastopirellula marina DSM 3645] gi|87286921|gb|EAQ78825.1| chromosome partition protein Smc [Blastopirellula marina DSM 3645] Length = 1209 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 15/123 (12%) Query: 7 IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62 +K L + F+++A F T+ VG NG GK+NI++AI + + R A Sbjct: 2 LKALELVGFKSFADKTRFEFPPGITVVVGPNGSGKSNIVDAIKWALGEQSAKSLRGKEMA 61 Query: 63 DVTRIGSPSFFS----------TFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ S F EG + + + R RS IN R Sbjct: 62 DVIFKGAASGARKAMNSAEATIVFDNSEGQLAIDSPEVHVSRRVYRSGEAEYLINRHPCR 121 Query: 112 VVD 114 + D Sbjct: 122 LRD 124 >gi|313240570|emb|CBY32899.1| unnamed protein product [Oikopleura dioica] Length = 658 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 89/287 (31%), Gaps = 39/287 (13%) Query: 5 IKIKFLNISEFRNY-ASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59 + IK + + F++Y + FD G NG GK+NIL++I FL S R Sbjct: 1 MFIKSIELDGFKSYARRTEIKDFDPLFNAITGLNGSGKSNILDSICFLLGISQLTQVRAT 60 Query: 60 SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107 S D+ + G + G I + + + + IN Sbjct: 61 SLNDLVYKNGQAGITRATVSITFDNRDKEKSPIGYHDSDKIVVTRQINVNGKNK-YMING 119 Query: 108 VVIR--VVDELNKHLRISWLVPSMD-------RIFSGLSMERRRFLDRMVFAIDPRHRRR 158 V + V + + + ++ P ++ + ME ++ + + Sbjct: 120 VHAQNNRVADFFQSVGMNINNPHFLIMQGRVTKVMNMKPMEILSMIEEATGT--RMYESK 177 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 R + + + + + K+ R + L E Sbjct: 178 KDSCTRAIE------KKQLKYNELTKILNEDLHPQIEKLKGDRESYM-RYQQLTREIEHS 230 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 + F ++ + QS K +L + R+ +S + T Sbjct: 231 QKF---VIAFKYHSLDEKLQSADEAKARLEAELQNAREEESRLKETQ 274 >gi|257899146|ref|ZP_05678799.1| DNA repair protein RecN [Enterococcus faecium Com15] gi|257837058|gb|EEV62132.1| DNA repair protein RecN [Enterococcus faecium Com15] Length = 561 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 6/103 (5%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + ++ ++I+ F LRL F T G+ G GK+ I++A+ L+ GRG +D Sbjct: 1 MMLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDY 55 Query: 65 TRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 R G+ + EG +++ ++L D ++ + Sbjct: 56 IRQGAEKCILEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 98 >gi|289579068|ref|YP_003477695.1| SMC domain protein [Thermoanaerobacter italicus Ab9] gi|289528781|gb|ADD03133.1| SMC domain protein [Thermoanaerobacter italicus Ab9] Length = 658 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 23/45 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + + + I FR+ + + F I VG N GK+NI++AI Sbjct: 1 MYLHRVVIKNFRSIEYVDITFAKGKNIIVGKNNCGKSNIIKAIDL 45 >gi|220907751|ref|YP_002483062.1| SMC domain-containing protein [Cyanothece sp. PCC 7425] gi|219864362|gb|ACL44701.1| SMC domain protein [Cyanothece sp. PCC 7425] Length = 912 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYAD 63 ++I + + F+ ++ F G NG GKT+ILEAI L G+ S + Sbjct: 1 MEILSVTLKNFKVHSDREFTFQPGMNAICGVNGAGKTSILEAIAWVLFDYYGY---SKTE 57 Query: 64 VTRIGSPSFFSTFARVEGMEGL 85 + + G S +G Sbjct: 58 LIKSGCASAQVAVTFTSNADGR 79 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 20/197 (10%) Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236 + +E Q+A + R L Y + I + + Sbjct: 731 RPKQEQVAELERQLA-ARQALAQERDRTEVELQKHQQIYQFIGDARQIYNKSGPRITSFY 789 Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKV 294 QS A + ++L + ++ D + + + S GEQ Sbjct: 790 LQSISAQADRLFRELLNRPDVNLE--------WTEDYEIRIQEAGHWRSFKSLSGGEQMC 841 Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDK 352 + + L+ +++++ I DE + ++D +R L + ++ S Q+F+ Sbjct: 842 AALAVRLSLLKVLADID----IAFFDEPTTNMDRLRRTQLAEALGNLRSFRQLFVIS-HD 896 Query: 353 SVFDSLNETAKFMRISN 369 F+ + E +R+ Sbjct: 897 DTFEHMTEN--VIRVEG 911 >gi|148651962|ref|YP_001279055.1| DNA repair protein RecN [Psychrobacter sp. PRwf-1] gi|148571046|gb|ABQ93105.1| DNA repair protein RecN [Psychrobacter sp. PRwf-1] Length = 603 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 66/237 (27%), Gaps = 60/237 (25%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + F L + G+ G GK+ +L+A+S GR + + R Sbjct: 2 LTSLTLQNFALINHHELSLYDGFNVITGETGAGKSLLLDALSLCIGGR-----ADTSMVR 56 Query: 67 IGSPSFFS----------------------------------------TFARVEGMEGLA 86 G + E E Sbjct: 57 HGKDNADIYAQFEFVLPATKNRSTTAKDSANNNTEPSANSNDKGTVALIQDWFERHEREF 116 Query: 87 DISIKLETRDDRSVR-CLQINDVVIRV--VDELNKHLRISWLVPSMDRIFSGLSMERRRF 143 D I + + + R +N V + + + EL L + + ++ Sbjct: 117 DGEILIRRQLSSNGRSKAWLNGVPVSLTELKELGAMLVNIHSQHAQQALLK--PAFVVQW 174 Query: 144 LDR------MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194 LD + + + +++L R + + + + +Q+A++ Sbjct: 175 LDNIAGLQPLAAQTEHAY----RAYQKLKRQAEEVAAKEAHRNDRIELLNSQLADIS 227 >gi|291480605|gb|ADE06380.1| structural maintenance of chromosomes 1-like 1 [Microtus arvalis] gi|291480607|gb|ADE06381.1| structural maintenance of chromosomes 1-like 1 [Microtus levis] Length = 104 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63 +K + I F++Y + + T +G NG GK+N+++AISF+ + R + D Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63 Query: 64 VTRIGSP 70 + G+P Sbjct: 64 LI-HGAP 69 >gi|262370092|ref|ZP_06063419.1| hypothetical protein HMPREF0016_01889 [Acinetobacter johnsonii SH046] gi|262315131|gb|EEY96171.1| hypothetical protein HMPREF0016_01889 [Acinetobacter johnsonii SH046] Length = 553 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 62/212 (29%), Gaps = 40/212 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + F L L D + G+ G GK+ +L+A LS G R + R Sbjct: 2 LTHLTLINFALADHLALDIDQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56 Query: 67 IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQINDVV- 109 GS T ++ G + + IN Sbjct: 57 FGSDKADVTAIFSYQEHSPEAVWLKAHELDDESGEIHLRRVIFATGRSK---AWINGRPS 113 Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR-------RRMID 161 + + E+ + L + S ++ RR+LD + Sbjct: 114 SLAELKEIGRLLVQLYSQHSQQQLLE--PPYPRRWLD-----LYHNFYPEAQAVREAYST 166 Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 +++ +R L ++ Q+ EL Sbjct: 167 WQKDIRQHQAALDAQATRKQRMDTLNLQLEEL 198 >gi|323342052|ref|ZP_08082285.1| hypothetical protein HMPREF0357_10465 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464477|gb|EFY09670.1| hypothetical protein HMPREF0357_10465 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 978 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 14/128 (10%) Query: 1 MTNRIKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGF 56 M + +K + + F+++A + + FD T VG NG GK+NI +AI L + Sbjct: 1 MGVSMFLKKIEMQGFKSFADKVVINFDDAVTGIVGPNGCGKSNISDAIRWVLGEQSVKSM 60 Query: 57 RRASYADVTRIGSP-------SFFSTFARVEGM---EGLADISIKLETRDDRSVRCLQIN 106 R +S DV GS + + E ++ I D IN Sbjct: 61 RGSSMTDVIFNGSETRRKVNLAEVTLVFNNEARPLNSDYEELEITRRLYRDTRESEYLIN 120 Query: 107 DVVIRVVD 114 V R+ D Sbjct: 121 KVPCRLRD 128 >gi|116872799|ref|YP_849580.1| DNA repair protein RecN [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741677|emb|CAK20801.1| DNA repair protein RecN [Listeria welshimeri serovar 6b str. SLCC5334] Length = 563 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 23/201 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG D R Sbjct: 2 LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----STDFIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G +F A +E +D + E RS + +IN ++ Sbjct: 57 HGEERLELQGLFALAEDNFACRNALLENGIDASDNMVVFERSLFRSGKNSCRINGKLVTT 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L + + RF + +++ +F+ ++R Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEFQTIVRE 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189 + + Q Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197 >gi|67921171|ref|ZP_00514690.1| SMC protein, N-terminal [Crocosphaera watsonii WH 8501] gi|67857288|gb|EAM52528.1| SMC protein, N-terminal [Crocosphaera watsonii WH 8501] Length = 1008 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 95/262 (36%), Gaps = 39/262 (14%) Query: 9 FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L + F +Y + L F HT G NG GK+++LEAI+++ G+ R A+ D+ Sbjct: 5 QLTLKNFLSYRDIILDFRGLHTACICGANGAGKSSLLEAITWVIWGKS-RTATDEDIIHT 63 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127 + + RV+ + S K+ R + + ++ + + Sbjct: 64 TAD-----YVRVDFEFICYEQSYKI-IRSRQRGKSNTLD-----------------FQIN 100 Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187 S D S R D ++ + + + + L +G D Sbjct: 101 SGDEFISLSGKGVRATQDIIIATLKLDYDTFIN---------SAYLRQGRADEFMLRGAT 151 Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247 + L + + + + + + + + + ++ +KL+L ++ ++++ Sbjct: 152 DRKKVLAELLKLEQYQHLAEKAKDLSKQYKGQS-EQLKLNLDRVKQQIEERKNINNQQKF 210 Query: 248 ----AKKLFDGRKMDSMSRRTL 265 K+ ++ D +T+ Sbjct: 211 INQEIDKIQKSQQTDQEKLQTI 232 >gi|241888878|ref|ZP_04776184.1| chromosome segregation protein SMC [Gemella haemolysans ATCC 10379] gi|241864554|gb|EER68930.1| chromosome segregation protein SMC [Gemella haemolysans ATCC 10379] Length = 1184 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 14/155 (9%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 +K+ + ++ F+++ F VG NG GK+NI++AI L + R +S Sbjct: 1 MKLAKVEVTGFKSFQKKTTFEFKNNLIGVVGPNGSGKSNIIDAIRWVLGEQSAKNLRGSS 60 Query: 61 YADVTRIGSPSFFS-TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119 DV G+ FA V + S +++ R R+ D + ++ Sbjct: 61 MKDVIFSGTEDAKRKNFAEVAVTFSNGEDSCEIKRRLYRNGDSEYYIDNKRAKLKDITDM 120 Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145 + I + ++RR ++ Sbjct: 121 YLDLGINKESYSIITQGKVEDIISSKPVDRRAIIE 155 >gi|226193270|ref|ZP_03788880.1| RecF/RecN/SMC N domain protein [Burkholderia pseudomallei Pakistan 9] gi|225934870|gb|EEH30847.1| RecF/RecN/SMC N domain protein [Burkholderia pseudomallei Pakistan 9] Length = 774 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 +K++ + I FR + + ++ VG N GK++I EAI Sbjct: 91 MKLRRVVIKNFRKLSDIDFSISKNLSVVVGPNASGKSSIFEAIRL 135 >gi|71745622|ref|XP_827441.1| structural maintenance of chromosome 1 [Trypanosoma brucei TREU927] gi|70831606|gb|EAN77111.1| structural maintenance of chromosome 1, putative [Trypanosoma brucei] Length = 1275 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 6/91 (6%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 +I+ + + F++Y+ + + T VG NG GK+N+++A+ F+ R S Sbjct: 4 RIERVELFNFKSYSGHVTIGPLKDFTCIVGPNGSGKSNLMDALCFVLSSNSTATLRGGSP 63 Query: 62 ADVTRIGSP--SFFSTFARVEGMEGLADISI 90 D G+ F T SI Sbjct: 64 TDFIHRGAQQRECFVTVVLRHSRADSIGSSI 94 >gi|311113650|ref|YP_003984872.1| ATP-dependent OLD family endonuclease [Rothia dentocariosa ATCC 17931] gi|310945144|gb|ADP41438.1| ATP-dependent OLD family endonuclease [Rothia dentocariosa ATCC 17931] Length = 682 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 7/64 (10%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M ++IK + I FR + + F+ T F+G NG GK++IL A+ + F A+ Sbjct: 1 MEENMRIKTVEIKNFRLLKDVSIDFN-NLTSFIGPNGSGKSSILYALDW------FFNAN 53 Query: 61 YADV 64 +++ Sbjct: 54 ASNL 57 >gi|261331644|emb|CBH14638.1| structural maintenance of chromosome 1, putative [Trypanosoma brucei gambiense DAL972] Length = 1275 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 6/91 (6%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 +I+ + + F++Y+ + + T VG NG GK+N+++A+ F+ R S Sbjct: 4 RIERVELFNFKSYSGHVTIGPLKDFTCIVGPNGSGKSNLMDALCFVLSSNSTATLRGGSP 63 Query: 62 ADVTRIGSP--SFFSTFARVEGMEGLADISI 90 D G+ F T SI Sbjct: 64 TDFIHRGAQQRECFVTVVLRHSRADSIGSSI 94 >gi|262382865|ref|ZP_06076002.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295743|gb|EEY83674.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 328 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYADV 64 I ++IS F++ + L + + +G VGK+N+LEA+S + R+ S Sbjct: 5 INHIHISNFKSLKDVTLDQCRRINLIIGKPNVGKSNLLEAMSLFCLPYLKYTRKRSIQQF 64 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98 R + + V+ + + +E + D Sbjct: 65 IRTENDAELFFDGHVDSPISVKTNKVNVEVKMDN 98 >gi|255945211|ref|XP_002563373.1| Pc20g08500 [Penicillium chrysogenum Wisconsin 54-1255] gi|211588108|emb|CAP86179.1| Pc20g08500 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1141 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 86/303 (28%), Gaps = 50/303 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 ++ + F + + VG NG GK+ IL AI+ G+ R S Sbjct: 101 LERVECYNFMCHDHFYVELGPLINFIVGKNGSGKSAILTAITLCLGGKASATNRGQSLKS 160 Query: 64 VTRIGSPSFFSTFARVEGMEG---------LADISIKLETRDDRSVRCLQINDVVIRV-- 112 + G + +G + + N ++ Sbjct: 161 FIKEGKENSTIIVRIKNQGDGAYLADDFGKTIIVERHFSRSGTSGFKVKSENGRIVSTKK 220 Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRH----- 155 +D + + + P + + + E+ +F + +D + Sbjct: 221 GDLDAITDYFSLQIENPMNVLSQDMARQFLSTSSPAEKYKFFVKGVQLEQLDNDYRLVEE 280 Query: 156 --------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA-------QMAELGVKINIA 200 R ++++ R L + S S+ QMA Sbjct: 281 SLDSIEEKLRASTQDVQVLQNRKELAKKKLEISDQHDSLRRRIRNIRGQMA-WAQVEEQE 339 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 R+E+ +L+ I E +K +L+ DG + A + + + D Sbjct: 340 RMEI--SLTEQIAEADRKIAEAESRLTRFDAAFDGVAAEETAAGEHSWRAAVAVNEAQDE 397 Query: 260 MSR 262 + Sbjct: 398 RDK 400 >gi|7258371|emb|CAB77587.1| structural maintenance of chromosomes (SMC)-like protein [Arabidopsis thaliana] Length = 1265 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 17/151 (11%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 KI L + F++Y + T +G NG GK+N+++AISF+ R R + Sbjct: 10 KILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69 Query: 63 DVT-----RIGSPSFFSTFARV-----EGMEGLADISI----KLETRDDRSVRCLQINDV 108 D+ R F R+ +G+E SI E R D V L + Sbjct: 70 DLIYAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEYRIDNRVVNLDEYNG 129 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSME 139 +R + L K ++ I S E Sbjct: 130 KLRSLGILVKARNFLVFQGDVESIASKNPKE 160 >gi|323141212|ref|ZP_08076113.1| chromosome segregation protein SMC [Phascolarctobacterium sp. YIT 12067] gi|322414355|gb|EFY05173.1| chromosome segregation protein SMC [Phascolarctobacterium sp. YIT 12067] Length = 1189 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 69/379 (18%), Positives = 121/379 (31%), Gaps = 52/379 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++K + F+++A L FD T VG NG GK+NI +AI ++ + R + Sbjct: 1 MRLKSFSTYGFKSFADKTELTFDKGITAVVGPNGSGKSNISDAIRWVLGEQSAKYLRGSK 60 Query: 61 YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111 DV GS A V +D ++ L+ R + IN R Sbjct: 61 MEDVIFSGSGKRRALGVAEVTVDFDNSDRTLPLDFEQVSLTRRIFRSGESEYAINKKSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L K +D + + +RR + +R R D Sbjct: 121 LKDIIDLMADTGLGKGSMSIIGQNKIDEVLNSRPEDRRSLFEEAAGIAK--YRLRKKDAV 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMA----------ELGVKINIAR----VEMINALS 209 R + LT S + +A EL + R + ++AL Sbjct: 179 RKLDDTANNLTRINDIRSEVDAQVEPLAQAAAKTQQFNELSEALRRCRLSVLLRRLDALE 238 Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY--AKKLFDGRKMDSMSRRTLIG 267 E K+ S G +++E + ++ + D +R T Sbjct: 239 ETGNELQAKKEAAASAYSEQAAKVGSMQAEAVQVQQELDKLAEAYNKLQDDIKNRETA-- 296 Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327 L D+ + S E+ L + E++ D Sbjct: 297 -----LEKLRGDQKVLDERVSQNEKASE----RLVQRNERLEQQVREQEARMQELATEFD 347 Query: 328 E-DKRNALFR-IVTDIGSQ 344 +KR+A+ V + +Q Sbjct: 348 AVEKRHAVADGAVKHLQAQ 366 >gi|242398710|ref|YP_002994134.1| chromosome segregation ATPase [Thermococcus sibiricus MM 739] gi|242265103|gb|ACS89785.1| chromosome segregation ATPase [Thermococcus sibiricus MM 739] Length = 1177 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 33/225 (14%) Query: 7 IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61 ++ L + F++Y + + F T VG NG GK+NI +AI F+ G R Sbjct: 4 VEKLEMRGFKSYGSRKIVVPFSRGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRATRI 63 Query: 62 ADVTRIGS-PSFFSTFARVEGMEGLADISIKL---ETRDDRSVR-----CLQINDVVIRV 112 D+ G+ + +A V D + E R V +N Sbjct: 64 GDLIFAGTKEEAPAKYAEVAMYFNNEDRGFPIDEDEVVIKRRVYPDGRSAYWLNGKRTSR 123 Query: 113 VDELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 D L L + + P + ERR +D + + +++ Sbjct: 124 SDIL-DVLSAAMISPDGYNLVLQGDITKFIKMSPTERRMIIDEISG---------IAEYD 173 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208 + L + + + + ++ K+ R + + L Sbjct: 174 EKKKKAMEELKQAEENLARVDLLIREVKTQLDKLEKERNDALRYL 218 Score = 37.6 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 8/79 (10%) Query: 272 DLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 D+ K + S GE+ + + A AP L DEI AHLD+ Sbjct: 1053 DIEAKPAGKEVKRIEAMSGGEKALTALAFVFA-----IQHFKPAPFYLFDEIDAHLDDAN 1107 Query: 331 RNALFRIVTD--IGSQIFM 347 + ++ + SQ + Sbjct: 1108 VKRVADLIKEASKDSQFIV 1126 >gi|288574647|ref|ZP_06393004.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570388|gb|EFC91945.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1135 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 94/267 (35%), Gaps = 34/267 (12%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + I L + F+++ S L T VG NG GK+NIL+ + + S G R Sbjct: 1 MYIARLQLKNFKSFGGSHELPLSEGFTAIVGPNGSGKSNILDGLRWGLGDSNGGRLRITR 60 Query: 61 YADVTRIGSPSFF---STFARVEGMEGLADISIKLETRDDR-------SVRCLQINDVVI 110 +D+ G+ + ST +E +G I+ D+ V+ + + Sbjct: 61 QSDLLFQGTTTRQPSKSTEVALELKDGDTSTVIRRRFSDESGAVTLVDGVKHRLQDLSEV 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170 + L+ + + M+RR L+ +F ID + + R+ Sbjct: 121 KRRWRLDGDRFAFIGQGDVTDAITHRPMQRRNHLE-ELFGID--------TYR---KRRD 168 Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230 L + +EA MAEL R E+ A++ + + Sbjct: 169 DALNKILSAEDELGRLEALMAEL----ESRRREIAPAVAKAKKARDIETALDESRADWYR 224 Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKM 257 ++ E+ ++KL + R+ Sbjct: 225 LRRRDMEREI----EDLSRKLVEERRR 247 >gi|218245617|ref|YP_002370988.1| hypothetical protein PCC8801_0748 [Cyanothece sp. PCC 8801] gi|218166095|gb|ACK64832.1| conserved hypothetical protein [Cyanothece sp. PCC 8801] Length = 377 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 24/45 (53%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 ++ L I FR + L + + VG+N GKT++LEAI S Sbjct: 2 LQSLKIENFRCFDEFELQNLGRINLLVGENNSGKTSVLEAIQIFS 46 >gi|126732367|ref|ZP_01748167.1| SMC protein [Sagittula stellata E-37] gi|126707236|gb|EBA06302.1| SMC protein [Sagittula stellata E-37] Length = 1151 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 24/166 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + L ++ F+++ S L+ + T VG NG GK+N+LEA+ ++ + + R Sbjct: 1 MHFSRLRLTGFKSFVDSTDLIISSGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGGG 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108 DV G+ S F ++ + LA +++ R R V ++N Sbjct: 61 MEDVIFAGASSRPARNFAEVALTIDNGDRLAPAGFNDTDQLEVVRRITRDVGSAYKVNGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR 146 R D L P++ R + + RR+ L+ Sbjct: 121 DTRARDVQMLFADAATGATSPALVRQGQISELINARPANRRKVLED 166 >gi|110639386|ref|YP_679595.1| DNA repair protein [Cytophaga hutchinsonii ATCC 33406] gi|110282067|gb|ABG60253.1| DNA replication and repair protein RecN [Cytophaga hutchinsonii ATCC 33406] Length = 551 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 25/261 (9%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62 ++ L I + L L A I G+ G GK+ +L A+ L + + Sbjct: 2 LQNLVIQNYSLIEDLELAPSANFNIITGETGAGKSIMLGAVGLLLGNRADTKVLLHTDRK 61 Query: 63 DVT----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDEL 116 + +IGS + F + ++ I+ E + R IND + + +L Sbjct: 62 CIIEGTFQIGSYKLETLFEEYD-LDYTNQCIIRREISSNGKSRAF-INDTPVTLDALKKL 119 Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176 +L D + G + LD + D+++ + L Sbjct: 120 GDYLMDV--HSQHDTLLLGSVAYQLSLLDGFASNQS-----ALKDYQQAFKKYKDLQHRF 172 Query: 177 YFDSSWCSSIEAQMAELGVKINIARVE--MIN-ALSSLIMEYVQKENFPHIKLSLTGFLD 233 + ++ Q A+ I E +I + + E + E+ IK L LD Sbjct: 173 QLKKNELQELQQQ-ADYNQFIYTELAEAALIEGEMEAKEAELKKIEHAEDIKQKLEATLD 231 Query: 234 G--KFDQSFCALKEEYAKKLF 252 +QS + + Y K+L Sbjct: 232 ALSNSEQSILSTLQNYNKQLQ 252 >gi|302331138|gb|ADL21332.1| Conserved hypothetical protein [Corynebacterium pseudotuberculosis 1002] Length = 584 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 57/396 (14%), Positives = 114/396 (28%), Gaps = 104/396 (26%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR------------ 54 I + I +R + +A I VG N GK+ +LEAI+ GR Sbjct: 5 ITRVQIRGYRRFQDFTFEPEAGTNIIVGGNEAGKSTLLEAITLALAGRVNGVRAKEYLNP 64 Query: 55 ---GF-------------RRASYADVTRIGSPSFFSTFARVEGMEGLADIS----IKLET 94 R A RI +E + G+ ++ + L Sbjct: 65 YWFNHTMVHDFFEKPPNERSHRDAPTFRIDV-YLDVESGELEKLRGVNNMENADSVGLSI 123 Query: 95 RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS----GLSMERRRFLDRMVFA 150 + + +D+ + ++P + G +RR + + Sbjct: 124 -------WAHPDPEYTQELDDYFQQEDCPEVLPVEYYMVEWLSFGGHPVQRRPKELGISL 176 Query: 151 IDPR--HRRRMIDF--ERLMRGRNRLLTEGYFDSSWCSSIEAQM-AELGVKINIARVEMI 205 ID R R +D+ +++ R D S S ++ A LG E++ Sbjct: 177 IDSRTIRSERGVDYYTRQILETR-----LDPKDRSRVSVDHRKLRATLG-------REVL 224 Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265 L+ + E Q + L + ++ Sbjct: 225 RDLNEELAEENQSIPGAVVGLQIDQSRSASWEA--------------------------T 258 Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325 + P D+ + + K +L + + ++ ++E H Sbjct: 259 LIPDVDDVPLSMAGQGNQAVA------KTIL---------AMGRNADTSSLVFIEEPENH 303 Query: 326 LDEDKRNALFRIV--TDIGSQIFMTGTDKSVFDSLN 359 L + L + + Q+F+T + + L Sbjct: 304 LSHTRMRQLISYIERSAQNRQVFITTHSSYILNRLG 339 >gi|309791173|ref|ZP_07685705.1| chromosome segregation protein SMC [Oscillochloris trichoides DG6] gi|308226735|gb|EFO80431.1| chromosome segregation protein SMC [Oscillochloris trichoides DG6] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 52/300 (17%), Positives = 98/300 (32%), Gaps = 41/300 (13%) Query: 1 MTNRIKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---F 56 M + +K L+I F+ +A + F T VG NG GK+NI +A+ ++ + Sbjct: 1 MGPFMYLKRLDILGFKTFATRTSVEFQPGITAIVGPNGSGKSNIADAVRWVLGEQSLSTL 60 Query: 57 RRASYADVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQIND 107 R ++ R + ++ + L + T R+ R IN Sbjct: 61 RCKRSEELIYSGGGRRAAAGLAEVSLTIDNSDRLLPLDFDEVTITRRATRAGENEYFINR 120 Query: 108 VVIRVVD-----ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDP------- 153 +R+ D E +D + ERRR + + D Sbjct: 121 NRVRLRDLQAATEPLGGSYTIINQGLVDAALTLRPEERRRLFEDAAEIGGFDLRRAEALR 180 Query: 154 ------RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-----GVKINIARV 202 + +R+ D + R R+L + ++A++ L + A Sbjct: 181 RLRETDANLQRVADLLEELEPRLRVLKRQAGQARQYRELQAELRTLLERHFASQWAQASA 240 Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262 E + + ++ +L+ + L G +S +E L R D R Sbjct: 241 ETARTRAEVERMQHLLDHARTAQLAASHELRG-LRESLRERREALG--LLHQRSSDLHRR 297 >gi|328863712|gb|EGG12811.1| hypothetical protein MELLADRAFT_32282 [Melampsora larici-populina 98AG31] Length = 743 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 18/118 (15%) Query: 8 KFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRRA 59 + L I F++Y + F + VG NG GK+N AI FL + GR R++ Sbjct: 1 QSLTIQGFKSYRDATIVEEFSPGVNVVVGRNGSGKSNFFSAIRFLLNDQYNALGREERQS 60 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 + G+ + + A VE +D R + I + DE + Sbjct: 61 ----LLHEGADNNSTFSAFVEATFDNSDH------RFPTGKTQVIIRRTIGSKKDEYS 108 >gi|285018456|ref|YP_003376167.1| DNA repair protein recn (recombination protein n) [Xanthomonas albilineans GPE PC73] gi|283473674|emb|CBA16177.1| probable dna repair protein recn (recombination protein n) [Xanthomonas albilineans] Length = 555 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 34/208 (16%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 +K L+I +F L T+ G+ G GK+ +++A+ FLS R + + V R Sbjct: 2 LKHLSIKDFAVVRGTELELGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56 Query: 67 IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111 G+ T+ R ++ A ++ R D R IN + Sbjct: 57 HGAERAELSAEFSLPATAPARTWLRENELDDDAHCQLRRVIRADGGSRA-WINGRPVTLT 115 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMIDFERL 165 + EL HL + S S R +R + R + ++ L Sbjct: 116 QLAELAGHLVEIHGQHEHQALLSRSSQLGLLDAYARNETERTMV------RSTAMRWQAL 169 Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 + R LL +G S ++ Q++EL Sbjct: 170 LTERETLLAQGDV-SDRIGFLQHQLSEL 196 >gi|91091932|ref|XP_966409.1| PREDICTED: similar to structural maintenance of chromosomes smc3 isoform 1 [Tribolium castaneum] gi|270000783|gb|EEZ97230.1| hypothetical protein TcasGA2_TC011028 [Tribolium castaneum] Length = 1203 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 91/280 (32%), Gaps = 27/280 (9%) Query: 5 IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61 + IK + I F++Y + FD +H + VG NG GK+N AI LS R Sbjct: 1 MHIKQVIIQGFKSYRDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 A VE + +D + LE + + + V+ D+ + + Sbjct: 61 RQALLHEGTGPRVVSAYVEIIFDNSDARVPLEHEE------IYLRRVIGAKKDQYFLNKK 114 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNRLLTEGY 177 + M+ + S +P + + ++ R +LL E Sbjct: 115 VVPRSEVMNLLESAG-----------FSNSNPYYIVKQGKINQMATAPDAHRLKLLREVA 163 Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237 + + MA L +VE I I E + +L D K Sbjct: 164 GTRVYDERRDESMAILRE--TEGKVEKIEEFLRTIEERLSTLEEEKEELKQYQHYD-KIR 220 Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277 ++ + E + D +R G + L V+ Sbjct: 221 RALEYIIHEVELNENKRKLADLEKQRNESGNEQEKLAVNL 260 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%) Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346 S G++ +V +G+ A AP L DEI LD R A+ ++ ++ S+ F Sbjct: 1102 SGGQKSLVALGLIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVANMIHELSSEAQF 1156 Query: 347 MTGTDKSVFDSLNETAKFMRIS 368 +T T + L KF + Sbjct: 1157 ITTT--FRPELLEHAHKFYGVK 1176 >gi|167771630|ref|ZP_02443683.1| hypothetical protein ANACOL_03002 [Anaerotruncus colihominis DSM 17241] gi|167666270|gb|EDS10400.1| hypothetical protein ANACOL_03002 [Anaerotruncus colihominis DSM 17241] Length = 1192 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 90/279 (32%), Gaps = 42/279 (15%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 ++++ L I F+++ L F T VG NG GK+NI +A+ ++ + R Sbjct: 4 LRLRGLEIQGFKSFPDKTRLTFHDGITAVVGPNGSGKSNIADAVRWVLGEQSTKTLRGGK 63 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ + + +E +G + + R RS +IN +R Sbjct: 64 MEDVIFGGTQARKPQGYAHVQLTIENADGALPYDSAEVSVSRRLYRSGESEYRINGTSVR 123 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + + I S S +RR + R+R Sbjct: 124 LRDVHELFMDTGLGRDGYSIIGQGRIAEIVSAKSTQRREIFEEAAGISKYRYR------- 176 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 R + +AEL + + L + + + Sbjct: 177 -----RQEAQRRLEAAEENLLRLRDILAELEAR--------VGPLQAQAEKARRFLTLAE 223 Query: 224 IKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 K +L D+S L+E+ K L D + Sbjct: 224 EKKTLELSLWIATLDRSRALLREQEDKLLLCRDDHDRIQ 262 >gi|166365126|ref|YP_001657399.1| hypothetical protein MAE_23850 [Microcystis aeruginosa NIES-843] gi|166087499|dbj|BAG02207.1| hypothetical protein MAE_23850 [Microcystis aeruginosa NIES-843] Length = 457 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 68/414 (16%), Positives = 130/414 (31%), Gaps = 79/414 (19%) Query: 5 IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 ++I+ + ++ + L + T+FVG+NG GKT IL+A L+ + Sbjct: 1 MEIQRVILNNIGLFEKLEISLAPTEQNPSNITVFVGNNGAGKTAILKA---LATSLSWFT 57 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118 A +T GS + S A SI++E D +N+ +D + Sbjct: 58 ARL--LTEKGSGNPISEDAIFNTANA---GSIEIEVWDSSKS----LNNPDQSDIDHYFR 108 Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG-RNRLLTEGY 177 I + R+ ++ + D RL R+ L + Sbjct: 109 W------------ILAKNRKGRKA-----------QYNSNLNDCTRLANRYRDALTHDDK 145 Query: 178 FDSSWCSSIEAQMAELGV--KINIARVEM--------------INALSSLIMEYVQKENF 221 + + L + KI + E EN Sbjct: 146 TSLPLIAFYPVERVVLDIPLKIRTKHTFLQLDGYDNSLSQGVDFRRFFEWFREREDTENE 205 Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG---PHRSDLIVDY- 277 + + L ++ + + ++ + + RT IG PH +L V Sbjct: 206 SGVPEDVLNQLRPIMAETNQDVWQWLNERNASAKDRQLTAVRTAIGRFMPHLDNLRVRRK 265 Query: 278 ---------CDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEIS 323 + + +A S GE+ ++ + LA + N I+L+DE+ Sbjct: 266 PRLYMAVDKNGETLNVAQLSQGEKSLMALVGDIARRLAMLNPALENPLAGDGIVLIDEVD 325 Query: 324 AHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375 HL + L +T+ Q +T V ++N + + Sbjct: 326 LHLHPSWQRRLCERLTETFPNCQFVLTTHSPLVISDCK-NVLIYTLANGELRQL 378 >gi|149915537|ref|ZP_01904063.1| chromosome segregation protein, putative [Roseobacter sp. AzwK-3b] gi|149810429|gb|EDM70272.1| chromosome segregation protein, putative [Roseobacter sp. AzwK-3b] Length = 1151 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 80/226 (35%), Gaps = 30/226 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60 ++ L ++ F+++ L T VG NG GK+N+LEA+ + R R Sbjct: 1 MQFTKLRLTGFKSFVDPTDLHIKHGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108 DV G+ S F ++ + LA +++ R R V ++N Sbjct: 61 MEDVIFAGAASRSARNFAEVSIHIDNSDRLAPSGFNDSDHLEIVRRITRDVGSAYKVNGK 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160 +R D L P++ R + + RRR L+ I ++ Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKSRRRILE-EAAGISGLYQ---R 176 Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI-ARVEMI 205 E ++ R D + Q+A+L + AR I Sbjct: 177 RHEAELKLRGAEQNLARVDDV-IEQLANQLAQLARQARQAARYRAI 221 >gi|47076774|dbj|BAD18317.1| DNA repair protein [Geobacillus stearothermophilus] gi|49481869|gb|AAT66646.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56 Query: 67 IGSPSFFSTFARVEGM 82 G+ A +EG+ Sbjct: 57 FGAEK-----AEIEGL 67 >gi|332645744|gb|AEE79265.1| structural maintenance of chromosomes 1 [Arabidopsis thaliana] Length = 1239 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 17/151 (11%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 KI L + F++Y + T +G NG GK+N+++AISF+ R R + Sbjct: 10 KILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69 Query: 63 DVT-----RIGSPSFFSTFARV-----EGMEGLADISI----KLETRDDRSVRCLQINDV 108 D+ R F R+ +G+E SI E R D V L + Sbjct: 70 DLIYAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEYRIDNRVVNLDEYNG 129 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSME 139 +R + L K ++ I S E Sbjct: 130 KLRSLGILVKARNFLVFQGDVESIASKNPKE 160 >gi|298486338|ref|ZP_07004401.1| Chromosome partition protein smc [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159345|gb|EFI00403.1| Chromosome partition protein smc [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1162 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 DV GS S S + +G A+ISI+ + D +N Sbjct: 61 MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158 R D + + L P I + R F++ Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + ++ R + + + + + + ++ +++ E K Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 ++ L G+ + + + + D R D+ R G H DL + Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEIGFEALVADQRSADASIERLRDGHH--DLSERFN 287 Query: 279 ---------DKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314 >gi|294496457|ref|YP_003542950.1| condensin subunit Smc [Methanohalophilus mahii DSM 5219] gi|292667456|gb|ADE37305.1| condensin subunit Smc [Methanohalophilus mahii DSM 5219] Length = 1173 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 25/165 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + F+++ +++ F T G NG GK+NI++ I F LS R R Sbjct: 1 MYIKKIEFMNFKSFGKKVKIPFFDDFTTISGPNGSGKSNIIDGILFVLGLSSSRTLRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKL---ETRDDRSVRC--------LQINDVV 109 D+ G S A+V D + + E R VR N Sbjct: 61 LTDLIYNGEKSKNPDNAQVTIYFDNKDRELPVDNDEVVISRKVRSTDNGYYSYFYFNGKS 120 Query: 110 IRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145 + + +++ +L + + P + RI + + ERR+ +D Sbjct: 121 V-SLGDVHNYLAKARVTPEGYNVVMQGDVTRIITMTAGERRKIID 164 >gi|219128749|ref|XP_002184568.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404018|gb|EEC43967.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1232 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 6/98 (6%) Query: 5 IKIKFLNISEFRNYASL-RLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59 + IK + IS FR++ + F VG NG GK+N+L+A+ F+ F R+ Sbjct: 1 MHIKQITISNFRSFRQQPEIEAFSTHTNCVVGRNGSGKSNLLDAVQFVLLAPRFANLRQE 60 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97 + GS S + A VE + AD LE D+ Sbjct: 61 ERQALLHEGSGSA-AVNAFVEIVFDNADHRFALEHSDE 97 >gi|254442049|ref|ZP_05055525.1| chromosome segregation protein SMC [Verrucomicrobiae bacterium DG1235] gi|198256357|gb|EDY80665.1| chromosome segregation protein SMC [Verrucomicrobiae bacterium DG1235] Length = 1293 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 60/363 (16%), Positives = 113/363 (31%), Gaps = 51/363 (14%) Query: 5 IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + + L ++ F+++A L F+ T VG NG GK+NI ++I L + R Sbjct: 1 MYLSALKVNGFKSFADPTLLKFNRGVTAVVGPNGCGKSNIADSIRWVLGEQSAKALRGGK 60 Query: 61 YADVTRIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 DV G+ + T E ++ I + D IN Sbjct: 61 MQDVIFEGTDKRKPLNICEVAITLTDCEKELGSDFNEVEIARKVHRDGGSN-YYINGKAC 119 Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162 R+ D + + +D+I S ERR + + + Sbjct: 120 RLKDIQRLFMDTGIGRTSYSIMAQGQIDQILSSKPEERRAVFEEAAG---------ISKY 170 Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENF 221 + R L + + + + + E+G +I ++ R I ++ + Sbjct: 171 KA---QRKETLNKLSHVEANLARVTDVIGEIGRQIGSLKRQATKAIRYKKISHKLRHLDV 227 Query: 222 PHIKLSLTGFLD--GKFDQSFCALK---EEYAKKLFDGRKMDSMSR--RTLIGPHRSDLI 274 + DQS L+ +E A L + + + + R + D Sbjct: 228 GYSAYQYQTMSATLADVDQSSSELQDEVDELATDLENKQGSLIVYKEERQTLIQKVQDSQ 287 Query: 275 VDYCDKAITIAHGST----GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330 D S + K+V + + A + L EI+ DE Sbjct: 288 QSVFDLRSMKEQASNAADMAQIKIVSLAERIEQANQDIASYESQ----LGEIAGRFDEHN 343 Query: 331 RNA 333 + Sbjct: 344 SDK 346 >gi|145301282|ref|YP_001144122.1| SMC (structural maintenance of chromosomes) family protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142856059|gb|ABO92374.1| SMC (structural maintenance of chromosomes) family protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 669 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 17/93 (18%) Query: 5 IKIKFLNISEFRNY------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 + ++ + S +R + +L + I VG+N GKT I++AI + + Sbjct: 1 MYLRRIRASNYRAFGDGSVAPALDWELNPGLNILVGENDAGKTGIIDAIRQVLLTTSY-- 58 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91 + RI F ++G +SI+ Sbjct: 59 ----ESIRIFEQDF-----HIQGANRSHTLSIE 82 >gi|79444781|ref|NP_191027.3| TTN8 (TITAN8); ATP binding / transporter [Arabidopsis thaliana] gi|332645742|gb|AEE79263.1| structural maintenance of chromosomes 1 [Arabidopsis thaliana] Length = 1238 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 17/151 (11%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 KI L + F++Y + T +G NG GK+N+++AISF+ R R + Sbjct: 10 KILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69 Query: 63 DVT-----RIGSPSFFSTFARV-----EGMEGLADISI----KLETRDDRSVRCLQINDV 108 D+ R F R+ +G+E SI E R D V L + Sbjct: 70 DLIYAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEYRIDNRVVNLDEYNG 129 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSME 139 +R + L K ++ I S E Sbjct: 130 KLRSLGILVKARNFLVFQGDVESIASKNPKE 160 >gi|71661871|ref|XP_817950.1| structural maintenance of chromosome (SMC) family protein [Trypanosoma cruzi strain CL Brener] gi|70883173|gb|EAN96099.1| structural maintenance of chromosome (SMC) family protein, putative [Trypanosoma cruzi] Length = 1267 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 I + + F++YA ++ + T VG NG GK+N+++A+ F+ S R Sbjct: 4 HIDRVELYNFKSYAGNVTIGPLKDFTCIVGPNGAGKSNLMDALCFVLSPSATTTLRGKDA 63 Query: 62 ADVTRIGSP 70 D+ G+ Sbjct: 64 TDLIHRGAQ 72 >gi|309774705|ref|ZP_07669729.1| DNA replication and repair protein RecF [Erysipelotrichaceae bacterium 3_1_53] gi|308917605|gb|EFP63321.1| DNA replication and repair protein RecF [Erysipelotrichaceae bacterium 3_1_53] Length = 174 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRR 58 IK + FRN S + +FD + I VG N GKTN+L+ I FR Sbjct: 2 IKSIEFKNFRNL-SCKFLFDNKLNIIVGKNNSGKTNLLDGIRLAFSTISGDYFRV 55 >gi|228992921|ref|ZP_04152845.1| DNA repair protein recN [Bacillus pseudomycoides DSM 12442] gi|228998965|ref|ZP_04158547.1| DNA repair protein recN [Bacillus mycoides Rock3-17] gi|228760582|gb|EEM09546.1| DNA repair protein recN [Bacillus mycoides Rock3-17] gi|228766778|gb|EEM15417.1| DNA repair protein recN [Bacillus pseudomycoides DSM 12442] Length = 583 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 103/277 (37%), Gaps = 51/277 (18%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL + F T+ G+ G GK+ I++AIS L GRG A+ R Sbjct: 6 LSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60 Query: 67 IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110 G+ + E ++ + + + RD ++N ++ Sbjct: 61 YGTEKAEIEGLFYIEDDKHPCITKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 120 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164 ++ E+ K L + + ER F+ DR+V ++ ++ ++E+ Sbjct: 121 SILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVNQLE-IYQGVYGEYEQ 176 Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224 L + L + E QMA R+++I I + K + Sbjct: 177 LKKQ----LKSLTEN-------EQQMA--------HRLDLIQFQHEEIRKADLKVD-EEN 216 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261 +L+ F++ + AL + Y DG +D + Sbjct: 217 ELTEERLKISNFEKIYKALGDAYRSLSEDGSGLDHVR 253 >gi|322818970|gb|EFZ26236.1| structural maintenance of chromosome (SMC) family protein, putative [Trypanosoma cruzi] Length = 1265 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 90/294 (30%), Gaps = 55/294 (18%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61 I + + F++YA ++ + T VG NG GK+N+++A+ F+ S R Sbjct: 4 HIDRVELYNFKSYAGNVTIGPLKDFTCIVGPNGAGKSNLMDALCFVLSPSATTTLRGKDA 63 Query: 62 ADVTRIGSPSFFSTFARV------------------EGMEGLADISIKLETRDDRSVRCL 103 D+ G+ V D I D+ R Sbjct: 64 TDLIHRGAQRRECAVTAVFCHTTPISPAATATTATTTAAGQGRDTEISFTRAVDQRGRIT 123 Query: 104 -QINDVVIRVVDELN---------KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153 +IN + L + ++ I + ++ R L ++ + Sbjct: 124 HKINGEPVDDRKYLAALSKFNVGTRVNNFLVFQHEVEAI----AQKKARELTDLLEQVS- 178 Query: 154 RHRRRMIDFERLMRG---------------RNRL--LTEGYFDSSWCSSIEAQMAELGVK 196 ++ R + R+ + L + E + +G + Sbjct: 179 GSAALREEYNRCKKAHELANQELTTASAEKRDAVVALNQMRLHKKEAEKYEEVLRRIGEE 238 Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250 + + L S + Q+ + KL+ D+ +K EYA+K Sbjct: 239 RRDEALVQLFYLESNLERQKQELHAFTEKLT-ALEKSIASDEDIRKMKREYAEK 291 >gi|295111234|emb|CBL27984.1| hypothetical protein [Synergistetes bacterium SGP1] Length = 377 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 24/45 (53%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 I+ L I ++ + + L D + G NG GKT+++E + L+ Sbjct: 2 IRKLEIHNYKLFRNFALELDGGVNLLCGPNGSGKTSVIEIVYALT 46 >gi|159041648|ref|YP_001540900.1| SMC domain-containing protein [Caldivirga maquilingensis IC-167] gi|157920483|gb|ABW01910.1| SMC domain protein [Caldivirga maquilingensis IC-167] Length = 804 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 4/112 (3%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 ++ + + R+ + + G NG GKT IL++I+ G + RR ++ Sbjct: 4 VELIEVENIRSIRKASVRLSSGVNFIHGLNGAGKTTILDSIALALYGTDWLKRRRIKLSE 63 Query: 64 VTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114 + IG+ +EG + E + + + + D Sbjct: 64 LVTIGASTGAVRLMINIEGRRYIIQRVFTREKVIESQTYVMSDDGSRVAGRD 115 Score = 46.1 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 12/178 (6%) Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK----LFDGRKMDSMSR 262 L LI + ++ F K+ L D + AL++ L D +M Sbjct: 626 RLRELISKRSERLRFIRGKIQEVAGLINAIDNAKPALRKALLNAINDELKDAFRMLRHKE 685 Query: 263 RTLIGPHRSDLIVDY---CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319 + D V K + ++ S GE+ +V + + A L G PI+LL Sbjct: 686 SLIDIYVTEDYEVMVKRSDGKELPVSMLSMGERNLVALVLRFA---LSKAILGDIPIMLL 742 Query: 320 DEISAHLDEDKRNALFRIVTDIGSQI--FMTGTDKSVFDSLNETAKFMRISNHQALCI 375 DE + HLD + R + + D+ + + + + F++ + + +++ + + Sbjct: 743 DEPTEHLDSEHRRRVSNWLRDLSNVVDTLVVTSHVDAFENTADNIIRVEVTSPRGESV 800 >gi|330965212|gb|EGH65472.1| hypothetical protein PSYAC_11291 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 438 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + + + F++Y S L A T +G N GK+N+LEAI L+ + + D+TR Sbjct: 2 LISIELKNFKSYESASLPLAA-MTFLIGANASGKSNVLEAIRLLNWLA--KGSRLEDITR 58 >gi|315654834|ref|ZP_07907739.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315490795|gb|EFU80415.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 122 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 22/50 (44%) Query: 4 RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53 R+ I+ I + L T+ +G NG GKTN+L I LS Sbjct: 24 RMAIRSFRIRNLLSIRDTTLELVTPVTLLIGPNGAGKTNLLRGIELLSRL 73 >gi|237654254|ref|YP_002890568.1| ATPase AAA [Thauera sp. MZ1T] gi|237625501|gb|ACR02191.1| AAA ATPase [Thauera sp. MZ1T] Length = 530 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59 +++ ++I F+N L L FD + T+ +G NG GK+N++EAI+ + RR Sbjct: 1 MRLDKVSIDGFKNLRGLELDFDERQLTTVLIGQNGAGKSNLIEAITQVFRWVDLRRN 57 >gi|49481865|gb|AAT66644.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56 Query: 67 IGSPSFFSTFARVEGM 82 G+ A +EG+ Sbjct: 57 FGAEK-----AEIEGL 67 >gi|49481871|gb|AAT66647.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56 Query: 67 IGSPSFFSTFARVEGM 82 G+ A +EG+ Sbjct: 57 FGAEK-----AEIEGL 67 >gi|49481861|gb|AAT66642.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56 Query: 67 IGSPSFFSTFARVEGM 82 G+ A +EG+ Sbjct: 57 FGAEK-----AEIEGL 67 >gi|49481873|gb|AAT66648.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56 Query: 67 IGSPSFFSTFARVEGM 82 G+ A +EG+ Sbjct: 57 FGAEK-----AEIEGL 67 >gi|42522699|ref|NP_968079.1| chromosome segregation SMC protein [Bdellovibrio bacteriovorus HD100] gi|39573895|emb|CAE79072.1| chromosome segregation SMC protein [Bdellovibrio bacteriovorus HD100] Length = 1195 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 ++IK + + F+++ + FDA T VG NG GK+NI++A+ ++ + R + Sbjct: 1 MRIKKIELIGFKSFKDRTVIHFDAGITGIVGPNGCGKSNIVDALMWVMGDQSAKDLRASQ 60 Query: 61 YADVTRIGSPSFF 73 DV G+ + Sbjct: 61 MTDVIFGGAEGYA 73 >gi|325091689|gb|EGC44999.1| DNA repair protein RAD18 [Ajellomyces capsulatus H88] Length = 1161 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 48/335 (14%), Positives = 95/335 (28%), Gaps = 68/335 (20%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ ++ F + + VG NG GK+ IL A++ G+ R S Sbjct: 121 IERVDCYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTALTLCLGGKASVTNRGQSLKS 180 Query: 64 VTRIGSPSFFSTFARVEGMEGLAD----------ISIKLETRDDRSVRCL----QINDVV 109 + G S + R++ A I + ++ Sbjct: 181 FIKEGKDSA-TIVVRIKNQGDSAYNPNEFGNSIIIERHFSRNGSSGFKIKSSSGRVVSTK 239 Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR--- 156 +D + + + P + + S E+ +F + +D +R Sbjct: 240 KSELDSITDYFALQIDNPMNVLSQDMARQFLSSSSPSEKYKFFVKGVQLEQLDQDYRLLE 299 Query: 157 ------------------------------RRMIDFERLMRGRNRLLT------EGYFDS 180 + D MR R R L + Sbjct: 300 ESIDQTEAKLSIHLDQIKDLETNRNNARAKLALSDKNETMRARVRNLRAQMAWVQVEEQE 359 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + +AQ+AE KI E+ A + L+ L+ + D+ Sbjct: 360 KNRDAYDAQLAEATRKIVDLESEVAKADELYQSADREYGIAAEAVLAAKSELEAQADRGK 419 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 A KE + + + R++ + R ++ + Sbjct: 420 VA-KESMNEIVKERRELQATQRTIRECLKTAESAI 453 >gi|313127260|ref|YP_004037530.1| condensin subunit smc [Halogeometricum borinquense DSM 11551] gi|312293625|gb|ADQ68085.1| condensin subunit Smc [Halogeometricum borinquense DSM 11551] Length = 1198 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK L + F+++ R+ F T+ G NG GK+NI++ + F L+ RG R Sbjct: 1 MHIKELVLDGFKSFGRKTRIPFYEDFTVVTGPNGSGKSNIIDGVLFALGLARTRGIRAEK 60 Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106 D+ +P + G A +++ L+ D + R IN Sbjct: 61 LTDLIY--NPGHADAESERAGGTKEASVTVILDNSDGKLDRSQVIN 104 >gi|213404596|ref|XP_002173070.1| mitotic cohesin complex subunit Psm1 [Schizosaccharomyces japonicus yFS275] gi|212001117|gb|EEB06777.1| mitotic cohesin complex subunit Psm1 [Schizosaccharomyces japonicus yFS275] Length = 1232 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 31/196 (15%) Query: 6 KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 ++ L + F++Y + + T +G NG GK+N+++AISF+ + R ++ Sbjct: 3 RLVRLEVENFKSYRGFQVIGPFYDFTSIIGPNGAGKSNLMDAISFVVGIKSSHLRSSNLK 62 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 D+ G + + + +KL D V E + R Sbjct: 63 DLIYRGRILSSQSQESSQLEQSPQSAFVKLVFALDDGREVSFKRSVSAAGASEYSIDGRT 122 Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182 + + + + L++ RN L+ +G ++ Sbjct: 123 VSFS---------------------------EYTKALEEQNILVKARNFLVFQGDIEAIA 155 Query: 183 CSSIEAQMAELGVKIN 198 S + + L +I+ Sbjct: 156 AQSPDD-LCRLIEQIS 170 >gi|45594277|gb|AAS68515.1| structural maintenance of chromosomes 1 protein [Arabidopsis thaliana] Length = 1218 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 17/151 (11%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 KI L + F++Y + T +G NG GK+N+++AISF+ R R + Sbjct: 10 KILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69 Query: 63 DVT-----RIGSPSFFSTFARV-----EGMEGLADISI----KLETRDDRSVRCLQINDV 108 D+ R F R+ +G+E SI E R D V L + Sbjct: 70 DLIYAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEYRIDNRVVNLDEYNG 129 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSME 139 +R + L K ++ I S E Sbjct: 130 KLRSLGILVKARNFLVFQGDVESIASKNPKE 160 >gi|312952556|ref|ZP_07771421.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0102] gi|310629457|gb|EFQ12740.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0102] gi|315153433|gb|EFT97449.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0031] Length = 486 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 3 NRIKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61 N++ I L + F+++ + F FVG+N GKT I +A+ FL R Y Sbjct: 4 NQLYISKLILKNFKSFEGEHVITFTRGINFFVGNNNSGKTTIFKAVEFL------RNGKY 57 Query: 62 AD-VTRIGSPSF 72 D + G + Sbjct: 58 EDSLITSGKENC 69 Score = 39.9 bits (92), Expect = 0.58, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIF 346 TG Q+ + + I ++ + + +DE L ++ L I SQ+F Sbjct: 258 TGMQRALAMSIIQVYSEITNAENSKQLFFFIDEPETFLHPVAQDKLIEAFEKISKNSQVF 317 Query: 347 MTGTDKSVFDSLNETAKFMRI 367 +T + N T F++I Sbjct: 318 ITTHSPYLLKKYNSTNHFIKI 338 >gi|257059354|ref|YP_003137242.1| chromosome segregation protein SMC [Cyanothece sp. PCC 8802] gi|256589520|gb|ACV00407.1| chromosome segregation protein SMC [Cyanothece sp. PCC 8802] Length = 1226 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 11/96 (11%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + IK + +S F+++ + + F T+ G NG GK+NIL+A+ F L+ +G R Sbjct: 2 VHIKRIELSHFKSFGGTTSIPFLTGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61 Query: 61 YADVTRIG-------SPSFFSTFARVEGMEGLADIS 89 D+ + S V +E L + S Sbjct: 62 LPDLVNHNHSNNRKTQEASVSVTFDVSDLEDLQEFS 97 >gi|225874788|ref|YP_002756247.1| hypothetical protein ACP_3245 [Acidobacterium capsulatum ATCC 51196] gi|225792214|gb|ACO32304.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC 51196] Length = 615 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 71/392 (18%), Positives = 120/392 (30%), Gaps = 58/392 (14%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA---- 59 ++++ L I+ FR A + F HT+ VG N +GK+ I EA+ L P R FRR Sbjct: 1 MRVRRLKITHFRGVAEGSVDFT-GHTLLVGGNNIGKSTICEALDLVLGPERLFRRPVVDE 59 Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE---- 115 R R+E L D+S + R R + +D VDE Sbjct: 60 HDFHCGRYLDKDGNPIEIRIEAT--LIDLSDEAHRRFRGHAR--RWDDKKCSFVDEEPEG 115 Query: 116 --LNKHLRISWLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMID----------- 161 + + W +P IF G + F+ F + D Sbjct: 116 VDKADNDGVIWALP---LIFIGRYDKDEDDFIGNTFFDHPTGEADALDDELENKLGSGRV 172 Query: 162 -FERLMRG----------RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210 F R + R S S+ V++ + + AL Sbjct: 173 PFTRAHKRLCGFVFLRTLRTGSRALSLQRGSLLDSVLRLGGSGSVEMWQDTLGRLQALDP 232 Query: 211 LIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269 I + Q K+ I+ + F++ +A L + + P Sbjct: 233 AIGDIAQLKQIRDEIRARMGRFVNLADGDESTGF---FASDLTREHVREVVRLFIAAQPG 289 Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329 + + TG +++ + A L + I ++E L Sbjct: 290 KHLVPFARLG---------TGSINLLVFALLTFIAELKDRQS---VIFAMEEPEIALPPH 337 Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361 + + R V Q +T V + T Sbjct: 338 TQRRVTRFVLAEMGQSIVTSHSPYVIEQFEPT 369 >gi|225438119|ref|XP_002273034.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1308 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 9/128 (7%) Query: 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 KI L + F++Y + T +G NG GK+N+++AISF+ R R A Sbjct: 9 KIHRLELENFKSYKGFQTIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68 Query: 63 DVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117 D+ + F R+ G +I+ ++ DE N Sbjct: 69 DLIYAFDDKEKEQKGRRAFVRLVYQLGNGSELQFTRAITSSGGSEYRIDGKMV-SWDEYN 127 Query: 118 KHLRISWL 125 L+ + Sbjct: 128 GKLKSLGI 135 >gi|167648328|ref|YP_001685991.1| chromosome segregation protein SMC [Caulobacter sp. K31] gi|167350758|gb|ABZ73493.1| chromosome segregation protein SMC [Caulobacter sp. K31] Length = 1153 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 24/165 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 ++ + L +S F+++ + T VG NG GK+N+LEA+ ++ R Sbjct: 1 MQFQRLRLSGFKSFVEPTEFRIEPGLTGVVGPNGCGKSNLLEALRWVMGANSAKAMRAGG 60 Query: 61 YADVTRIG-----SPSFFSTFARVEGMEGLA------DISIKLETRDDRS-VRCLQINDV 108 DV G + + ++ E A D +++ R DR +IN Sbjct: 61 MDDVIFAGSGNRPARNHADVTLTIDNAERTAPAQFNDDPVLEVVRRIDRGEGSTYRINGR 120 Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145 +R D L P++ R + RRR L+ Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIGAKPQNRRRILE 165 >gi|289626388|ref|ZP_06459342.1| chromosome segregation protein SMC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649543|ref|ZP_06480886.1| chromosome segregation protein SMC [Pseudomonas syringae pv. aesculi str. 2250] gi|330866313|gb|EGH01022.1| chromosome segregation protein SMC [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 1162 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 DV GS S S + +G A+ISI+ + D +N Sbjct: 61 MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158 R D + + L P I + R F++ Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + ++ R + + + + + + ++ +++ E K Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 ++ L G+ + + + + D R D+ R G H DL + Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEIGFEALVADQRSADASIERLRDGHH--DLSERFN 287 Query: 279 ---------DKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314 >gi|255318626|ref|ZP_05359857.1| chromosome segregation protein SMC [Acinetobacter radioresistens SK82] gi|262379148|ref|ZP_06072304.1| chromosome segregation protein SMC [Acinetobacter radioresistens SH164] gi|255304308|gb|EET83494.1| chromosome segregation protein SMC [Acinetobacter radioresistens SK82] gi|262298605|gb|EEY86518.1| chromosome segregation protein SMC [Acinetobacter radioresistens SH164] Length = 1149 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 103/294 (35%), Gaps = 52/294 (17%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++ L +S F+++A L F + VG NG GK+N+++AI ++ S R R S Sbjct: 1 MRLSSLKLSGFKSFADSTTLNFRDSRSAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60 Query: 61 YADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107 DV G+ F +T+ ++ G + + + + +R + +N Sbjct: 61 MQDVIFTGTAKRKPVGMASVELRFDNTYGKLGGAYNAYN-ELAVRRQVNREGKSEYFLNG 119 Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143 R D E R+ P R+F + RRR Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAIIEQGMINRLVDAKPDEMRVFIEEAAGISRYQARRR- 178 Query: 144 LDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200 + ++ + + E + ++ + + L + + +E ++ L ++I Sbjct: 179 --ETLLHLEHT-TQNLSRLEDIALELKSQLKSLKKQAETAVQYKELENRIRTLKIEILSV 235 Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254 + E L EY + N L + + + E + + L Sbjct: 236 QCERSQHLQ---QEYTLQMNELGESFKLVRSELHTLEHNLTSTSELFQRLLQQS 286 Score = 39.5 bits (91), Expect = 0.77, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 + ++A S GE+ + + + A RL AP +LDE+ A LD+ + Sbjct: 1039 GKRNSSLALLSGGEKALTALALVFAIFRL-----NPAPFCVLDEVDAPLDDANVQRFCNL 1093 Query: 338 VTDIGSQI 345 V ++ Q+ Sbjct: 1094 VKELSEQV 1101 >gi|218782597|ref|YP_002433915.1| SMC domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763981|gb|ACL06447.1| SMC domain protein [Desulfatibacillum alkenivorans AK-01] Length = 572 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 ++I+ + I FR +G GK+ +++AI + R R A + D Sbjct: 1 MRIRKIEILNFRCIKRFFWCPSDGLNCLIGPGDSGKSTVIDAIDYCLGAR--RTAQFTD 57 >gi|15965918|ref|NP_386271.1| DNA repair protein [Sinorhizobium meliloti 1021] gi|307308228|ref|ZP_07587937.1| DNA repair protein RecN [Sinorhizobium meliloti BL225C] gi|307319695|ref|ZP_07599120.1| DNA repair protein RecN [Sinorhizobium meliloti AK83] gi|15075187|emb|CAC46744.1| Probable DNA repair protein [Sinorhizobium meliloti 1021] gi|306894626|gb|EFN25387.1| DNA repair protein RecN [Sinorhizobium meliloti AK83] gi|306901226|gb|EFN31832.1| DNA repair protein RecN [Sinorhizobium meliloti BL225C] Length = 557 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 87/277 (31%), Gaps = 45/277 (16%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60 M ++ I+ + + L L FDA ++ G+ G GK+ +L+++S GRG Sbjct: 1 MLAQLAIRDIVL-----IERLDLSFDAGLSVLTGETGAGKSILLDSLSLALGGRG----- 50 Query: 61 YADVTRIGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107 + R G F R G++ D+ + D + + Sbjct: 51 DGSLVRHGEDRGQVTAVFDVPAGHTARLFLRENGIDDDGDLIFRRVQSADGRTKAFINDQ 110 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDF 162 V + + DR R LD + R D Sbjct: 111 PVSVQLMRQVGQTLVEIHGQHDDRALVDTDA-HRTLLDAFGGTTEAAEDVAAFYRAWKDA 169 Query: 163 ERLM-RGRNR---------LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212 ER + + R + L + S + + EL AR+ ++ I Sbjct: 170 ERCLKKHREKVEAAAREADYLRSSVEELETLSPRDGEEEELAEN--RARMMKAERIAGDI 227 Query: 213 MEYVQKENFPH----IKLSLTGFLDGKFDQSFCALKE 245 E + N + SL L+ K ++ L+E Sbjct: 228 SEASEFLNGNASPVPLIASLVRRLERKSHEAPGLLEE 264 >gi|331013368|gb|EGH93424.1| chromosome segregation protein SMC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1162 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 DV GS S S + +G A+ISI+ + D +N Sbjct: 61 MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158 R D + + L P I + R F++ Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + ++ R + + + + + + ++ +++ E K Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 ++ L G+ + + + + D R D+ R G H DL + Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEIGFEALVADQRSADASIERLRDGHH--DLSERFN 287 Query: 279 ---------DKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314 >gi|311068115|ref|YP_003973038.1| chromosome segregation SMC protein [Bacillus atrophaeus 1942] gi|310868632|gb|ADP32107.1| chromosome segregation SMC protein [Bacillus atrophaeus 1942] Length = 1186 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L++ F+++ + + F T VG NG GK+NI +AI L R R Sbjct: 1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGK 60 Query: 61 YADVTRIGSPS 71 D+ GS S Sbjct: 61 MEDIIFAGSDS 71 >gi|296126603|ref|YP_003633855.1| ATPase [Brachyspira murdochii DSM 12563] gi|296018419|gb|ADG71656.1| ATPase-like protein [Brachyspira murdochii DSM 12563] Length = 354 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 3 NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58 + I+I ++IS F+ + + + + G N VGK+N+LEA+ S FR Sbjct: 2 SDIQIPNISISNFKCFKEFSIDCFKRFNLIFGKNSVGKSNLLEALYLYSNM--FRS 55 >gi|199597131|ref|ZP_03210563.1| Chromosome segregation ATPase [Lactobacillus rhamnosus HN001] gi|258508645|ref|YP_003171396.1| chromosome partition protein smc [Lactobacillus rhamnosus GG] gi|199591935|gb|EDZ00010.1| Chromosome segregation ATPase [Lactobacillus rhamnosus HN001] gi|257148572|emb|CAR87545.1| Chromosome partition protein smc [Lactobacillus rhamnosus GG] gi|259649951|dbj|BAI42113.1| chromosome segregation protein [Lactobacillus rhamnosus GG] Length = 1184 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L I+ F+++A + F + T VG NG GK+NI EAI + + R Sbjct: 1 MELKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60 Query: 61 YADVTRIGSPS 71 DV G+ S Sbjct: 61 MGDVIFAGTDS 71 >gi|322385060|ref|ZP_08058710.1| DNA repair protein RecN [Streptococcus cristatus ATCC 51100] gi|321270970|gb|EFX53880.1| DNA repair protein RecN [Streptococcus cristatus ATCC 51100] Length = 552 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L F+ T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+P +G E ++ I+ E +IN +I + Sbjct: 57 HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMINLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----AIDPRHRRRMIDFERLMRGR 169 + + D+ S LD + R++ + L + Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRSQLHIAMLDEFGSADFLHLKGRYQETFDRYRSLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206 L + +E QMAE+ + ++ R ++N Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDIALHQERDRLLN 221 >gi|260911970|ref|ZP_05918534.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260633917|gb|EEX52043.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 658 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 5 IK---IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 +K IK L++ F+ SL + F+ T G NG+GKT I +A ++L G+ Sbjct: 1 MKRIVIKKLSLVNFKGIRSLTIDFNEGVTTISGRNGLGKTTIFDAFTWLLFGK 53 >gi|49481867|gb|AAT66645.1| DNA repair and genetic recombination protein [Geobacillus stearothermophilus] Length = 573 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L+I F SL L FD T+ G+ G GK+ I++AI L GRG ++ R Sbjct: 2 LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56 Query: 67 IGSPSFFSTFARVEGM 82 G+ A +EG+ Sbjct: 57 FGAEK-----AEIEGL 67 >gi|329121098|ref|ZP_08249729.1| DNA repair protein RecN [Dialister micraerophilus DSM 19965] gi|327471260|gb|EGF16714.1| DNA repair protein RecN [Dialister micraerophilus DSM 19965] Length = 558 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 96/262 (36%), Gaps = 32/262 (12%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+IS F + + T+F G+ G GK+ +++A+S L+ RG D+ R Sbjct: 2 LRSLHISNFAIIKDIEMELGDGVTVFTGETGSGKSILVDALSLLAGKRG-----SIDLIR 56 Query: 67 IGSPSF------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRV 112 G F S + E + DI I + C +N ++ Sbjct: 57 SGEDFFCVEGIFSINKSIVSLLSEFEVNDDNEDIIISRKMNKSGKSTCT-VNGFFCSVKK 115 Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG---- 168 ++E+ K L + + F R++ + ++ ++ Sbjct: 116 LEEIGKKLFRFHEQFDNTDLLNSD------FCKRIIDNFSVEIKVAWNEYSKIYSDWKTT 169 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 ++++ + + ++ + E +I AR+ + S + + +N+ I+ L Sbjct: 170 KSKIEKLNKEEQEYQRKLDVLLWET-QQIEDARI-CLEEDSKIAQKLSVLQNYERIQDGL 227 Query: 229 TGFLDGKFDQSFCALKEEYAKK 250 + +++ K A+K Sbjct: 228 QTVSNILSEENGIQDKLSVAEK 249 >gi|229552451|ref|ZP_04441176.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus rhamnosus LMS2-1] gi|229314188|gb|EEN80161.1| SMC structural maintenance of chromosomes partitioning protein [Lactobacillus rhamnosus LMS2-1] Length = 1184 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L I+ F+++A + F + T VG NG GK+NI EAI + + R Sbjct: 1 MELKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60 Query: 61 YADVTRIGSPS 71 DV G+ S Sbjct: 61 MGDVIFAGTDS 71 >gi|209522913|ref|ZP_03271470.1| ATPase-like protein [Arthrospira maxima CS-328] gi|209496500|gb|EDZ96798.1| ATPase-like protein [Arthrospira maxima CS-328] Length = 364 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55 K + + FR + L + + + G N +GKT +LEAI ++ Sbjct: 3 KSITVKNFRCFEDLTISQIERVNLIGGMNNIGKTALLEAIYLMTSLGS 50 >gi|119467308|ref|XP_001257460.1| structural maintenance of chromosomes 5 smc5 [Neosartorya fischeri NRRL 181] gi|119405612|gb|EAW15563.1| structural maintenance of chromosomes 5 smc5 [Neosartorya fischeri NRRL 181] Length = 1192 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 69/240 (28%), Gaps = 18/240 (7%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62 I + +++F Y S + + +G NG GK+ ++ AI L G R Sbjct: 109 AILRIKVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPG 168 Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-------VVDE 115 + + G +G + I + + + IN Sbjct: 169 EFVKHGCREASIEIELAKGPGLRKNPVIGRTIKREGNKSSFTINGKQASLAQVKKFAQSF 228 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175 + + +P A P ++L + +L + Sbjct: 229 AIQIDNLCQFLPQDKVSEFAALTPVELLNSTQRAAAGPEMIEWHESLKKLRAEQKKLQLD 288 Query: 176 GYFDSSWCSSIE--AQMAELGVKINIARV------EMINALSSLIMEYVQKENFPHIKLS 227 D +++E +M + V+ R EM+ L +I + K+ Sbjct: 289 NQSDKDLLANLENRQEMQRVDVERMRQRAQIKRKIEMLEHLRPVIHYREARNELNRKKIE 348 >gi|26553935|ref|NP_757869.1| structural maintenance of chromosomes SMC superfamily proteins [Mycoplasma penetrans HF-2] gi|26453943|dbj|BAC44273.1| structural maintenance of chromosomes SMC superfamily proteins [Mycoplasma penetrans HF-2] Length = 984 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 71/218 (32%), Gaps = 29/218 (13%) Query: 7 IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62 +K F+++A L FD+ VG NG GK+N+++AI L + R Sbjct: 4 LKKFEAIGFKSFADFTKLNFDSTMIGIVGPNGAGKSNVIDAIKWVLGEQSIKSLRGKKSD 63 Query: 63 DVTRIGSPSFFSTF----------ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 D+ GS S + + + ++S+ + IN + R Sbjct: 64 DIIFHGSKSKEACEYAQVTLTFDNTKKQLHFDGDEVSVSRKLHRGNGNNEYYINGQLTR- 122 Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRMID 161 + +++ + L I S ERR + + + + Sbjct: 123 LKDIHDIFSDTGLSKGSLGIISQGTVNWFADSKPEERRTIFEEAAGISKYIRKKEESLRQ 182 Query: 162 FERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196 ER + N L E Y D ++ E K Sbjct: 183 LERTQNNLNRVNDLTKELYKDIKKLEVQASKAKEYSEK 220 >gi|148544276|ref|YP_001271646.1| AAA ATPase [Lactobacillus reuteri DSM 20016] gi|184153654|ref|YP_001841995.1| hypothetical protein LAR_0999 [Lactobacillus reuteri JCM 1112] gi|227364993|ref|ZP_03849033.1| AAA ATPase [Lactobacillus reuteri MM2-3] gi|325681695|ref|ZP_08161215.1| AAA ATPase [Lactobacillus reuteri MM4-1A] gi|148531310|gb|ABQ83309.1| AAA ATPase [Lactobacillus reuteri DSM 20016] gi|183224998|dbj|BAG25515.1| hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227069963|gb|EEI08346.1| AAA ATPase [Lactobacillus reuteri MM2-3] gi|324979007|gb|EGC15954.1| AAA ATPase [Lactobacillus reuteri MM4-1A] Length = 537 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56 + + L + F+++ L+ + F+ I VG+NGVGKT +++A+ + G F Sbjct: 1 MYLNELYLYNFKSFKGLQKITFNRNKNILVGNNGVGKTTVIQALRLILKGSSF 53 >gi|307211152|gb|EFN87370.1| Structural maintenance of chromosomes protein 6 [Harpegnathos saltator] Length = 1006 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 68/222 (30%), Gaps = 34/222 (15%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62 ++K + + F + +L + + VG NG GK+ IL A++ R + R S Sbjct: 40 RVKNIRLRNFMCHDALEIKLNENVNFIVGRNGSGKSAILTALTVGLGARAYITNRGTSLK 99 Query: 63 DVTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQINDVVIRV--- 112 ++G S + I+I S + +I Sbjct: 100 KFIKVGQTSAIIEITLTNKGDAAYKPETYGDVITIVRTIGPTSSYKIKNWRGEIISTKRD 159 Query: 113 -VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMI- 160 +D++ + I P S + S S E+ ++ I+ + + Sbjct: 160 ELDDIISSMNIQIDNPISILNQDVSRTFLISSKSEEKYNLFMKATLLDIIENNYVEALQI 219 Query: 161 ---------DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193 + + + + D ++ AEL Sbjct: 220 CMEENEKLKQYYEALSQVKAEIEKLKDDIQKMEQMDESRAEL 261 >gi|88601461|ref|YP_501639.1| putative RecF protein [Methanospirillum hungatei JF-1] gi|88186923|gb|ABD39920.1| putative RecF protein [Methanospirillum hungatei JF-1] Length = 132 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 16/82 (19%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 +KI L++ FR++ + ++ I +G NG GK+N+L D+ Sbjct: 1 MKICSLSLKGFRSFKDISWSPES-LNIVIGPNGSGKSNLL---------------KLLDM 44 Query: 65 TRIGSPSFFSTFARVEGMEGLA 86 R+ + F + EG Sbjct: 45 IRLYADGEFRDYVLREGGRDQI 66 >gi|16329963|ref|NP_440691.1| chromosome segregation protein SMC1 [Synechocystis sp. PCC 6803] gi|1652449|dbj|BAA17371.1| chromosome segregation protein SMC1 [Synechocystis sp. PCC 6803] Length = 1200 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 109/308 (35%), Gaps = 64/308 (20%) Query: 5 IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60 + +K + +S F+++ + + F T+ G NG GK+NIL+A+ F L+ +G R Sbjct: 2 VYVKRIELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61 Query: 61 YADVT-------RIGSPSFFSTFARVEGMEGLAD-----------ISIKLETRDDRSVRC 102 D+ R S + S + E L++ I E R ++ Sbjct: 62 LPDLVNNTFKGNRGSSEASVSVTFELHDGENLSEPGANHNGNGNGAKISKEWTVTRRLKV 121 Query: 103 LQ---------INDVVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFL 144 + IN V EL++ L + P I S ERR + Sbjct: 122 TKGGNYSSNYYINGETA-TVTELHEQLNELRIYPEGYNIVLQGDVTRIITMNSKERREII 180 Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV-- 202 D + + ++++ + LTE C I ++ ++ R Sbjct: 181 DELAGVAEFD--------RKIVKTK-ETLTEVQDREERCQIIATELERTLERLAADRQKA 231 Query: 203 EMINALSSLIMEY------VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256 E AL + E +Q + + L G L+ +QS + ++ D R Sbjct: 232 EKYQALRQQVQEKQGWAKVIQYKAVEQQRQKLWGQLERDREQS------QQIQQALDQRS 285 Query: 257 MDSMSRRT 264 +++T Sbjct: 286 QAIQTQQT 293 >gi|225868185|ref|YP_002744133.1| chromosome partition protein [Streptococcus equi subsp. zooepidemicus] gi|225701461|emb|CAW98598.1| putative chromosome partition protein [Streptococcus equi subsp. zooepidemicus] Length = 1183 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 96/280 (34%), Gaps = 30/280 (10%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A ++FD T VG NG GK+N+ E++ + + + R Sbjct: 1 MFLKEIQMQGFKSFADKTRIIFDKGVTAVVGPNGSGKSNVTESLRWALGEASAKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGME---GLADISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ ++ ++ + A I++E R+ I+ +R Sbjct: 61 MPDVIFAGTEHRSPLNYAEVAVVLDNSDAFIKNAQKEIRVERHIYRNGDSDYLIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D L + ++ IF+ ERR + ++ ++ Sbjct: 121 LRDIHELFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAG---------VLKYK 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + L + + I ++ + L+ + + Sbjct: 172 TRKKETQTKLNQTQDNLDRLDDIIYELEHQAGPLERQAKTARQFLALDADRKQLQLDILV 231 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263 + +++ AL+E+ A + +++ + R Sbjct: 232 KDIEQDRMEQEAQEKALAALREDLAAYHRKRQSLEAENHR 271 >gi|172035278|ref|YP_001801779.1| putative exonuclease SbcC [Cyanothece sp. ATCC 51142] gi|171696732|gb|ACB49713.1| putative exonuclease SbcC [Cyanothece sp. ATCC 51142] Length = 1008 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 5/93 (5%) Query: 9 FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L + F +Y L F HT G NG GK+++LEAI++ G+ R AS D+ Sbjct: 5 QLTLKNFLSYRETVLDFRGLHTACICGANGAGKSSLLEAITWAIWGKS-RTASDEDIIHT 63 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100 + F + I + RS Sbjct: 64 TAQYVRVDFEFIS---YEQSYRIIRSRQRGRSN 93 >gi|219666706|ref|YP_002457141.1| ATP-dependent endonuclease of the OLD family-like protein [Desulfitobacterium hafniense DCB-2] gi|219536966|gb|ACL18705.1| ATP-dependent endonuclease of the OLD family-like protein [Desulfitobacterium hafniense DCB-2] Length = 601 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 29/52 (55%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56 ++I + +S +RN + ++F +G+N +GK+N L I + G+GF Sbjct: 1 MRIFCVKVSNYRNIDGITVIFHPDCNYIIGENNLGKSNFLSLIGTVCAGKGF 52 >gi|321315360|ref|YP_004207647.1| chromosome partition protein SMC [Bacillus subtilis BSn5] gi|320021634|gb|ADV96620.1| chromosome partition protein SMC [Bacillus subtilis BSn5] Length = 1186 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++ + + F T VG NG GK+NI +AI ++ R R Sbjct: 1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGK 60 Query: 61 YADVTRIGSPS 71 D+ GS S Sbjct: 61 MEDIIFAGSDS 71 >gi|296331169|ref|ZP_06873643.1| chromosome segregation SMC protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674325|ref|YP_003865997.1| chromosome condensation and segregation SMC ATPase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151813|gb|EFG92688.1| chromosome segregation SMC protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412569|gb|ADM37688.1| chromosome condensation and segregation SMC ATPase [Bacillus subtilis subsp. spizizenii str. W23] Length = 1186 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L++ F+++ + + F T VG NG GK+NI +AI L R R Sbjct: 1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGK 60 Query: 61 YADVTRIGSPS 71 D+ GS S Sbjct: 61 MEDIIFAGSDS 71 >gi|289523384|ref|ZP_06440238.1| putative RecF/RecN/SMC N domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503076|gb|EFD24240.1| putative RecF/RecN/SMC N domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 1140 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 77/217 (35%), Gaps = 29/217 (13%) Query: 1 MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---F 56 M + I+ + + F+++ + + ++T+ G NG GK+NIL+A+ + + Sbjct: 1 MEISLFIERVALKGFKSFGEQVDIELSEKYTVIAGPNGSGKSNILDAVRWALGEQSPSRL 60 Query: 57 RRASYADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD- 114 R + +D+ GSPS + ARV + + D S ++ +++ + Sbjct: 61 RISKQSDLLFQGSPSRPPAREARVSFVINDKGKLKAFKRVLDESGSSFFVDGKKVKLYEM 120 Query: 115 ----ELNKHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167 L I + + ERR L+ + + + R + Sbjct: 121 EEEKRLLGLEGIDFAFIGQGEVLEAIKQKPAERRENLEVLFG---------ISQYRR--K 169 Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204 L D ++ L ++ R ++ Sbjct: 170 REEAFLKLIRADEEAL-----RLKTLIDELKRRRSDI 201 >gi|258539822|ref|YP_003174321.1| chromosome partition protein smc [Lactobacillus rhamnosus Lc 705] gi|257151498|emb|CAR90470.1| Chromosome partition protein smc [Lactobacillus rhamnosus Lc 705] Length = 1184 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L I+ F+++A + F + T VG NG GK+NI EAI + + R Sbjct: 1 MELKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60 Query: 61 YADVTRIGSPS 71 DV G+ S Sbjct: 61 MGDVIFAGTDS 71 >gi|221309469|ref|ZP_03591316.1| chromosome segregation SMC protein homolg [Bacillus subtilis subsp. subtilis str. 168] gi|221313794|ref|ZP_03595599.1| chromosome segregation SMC protein homolg [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318718|ref|ZP_03600012.1| chromosome segregation SMC protein homolg [Bacillus subtilis subsp. subtilis str. JH642] gi|221322989|ref|ZP_03604283.1| chromosome segregation SMC protein homolg [Bacillus subtilis subsp. subtilis str. SMY] gi|255767364|ref|NP_389476.2| chromosome condensation and segregation SMC ATPase [Bacillus subtilis subsp. subtilis str. 168] gi|239938850|sp|P51834|SMC_BACSU RecName: Full=Chromosome partition protein smc gi|225184991|emb|CAB13467.2| chromosome condensation and segregation SMC ATPase [Bacillus subtilis subsp. subtilis str. 168] Length = 1186 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L++ F+++ + + F T VG NG GK+NI +AI L R R Sbjct: 1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGK 60 Query: 61 YADVTRIGSPS 71 D+ GS S Sbjct: 61 MEDIIFAGSDS 71 >gi|206579854|ref|YP_002237036.1| OLD family TOPRIM nucleotidyl transferase/hydrolase domain protein [Klebsiella pneumoniae 342] gi|206568912|gb|ACI10688.1| OLD family TOPRIM nucleotidyl transferase/hydrolase domain protein [Klebsiella pneumoniae 342] Length = 583 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASY 61 + + L IS FR+ + + T+ VG+N GK+N+++AI L+ GR R Sbjct: 1 MYLGSLKISRFRSCDDVTVSLRPDLTVLVGENNGGKSNVVDAIRLLTLPLSGRRERYPED 60 Query: 62 ADVTRIGSPSFFSTFARVEGMEGL 85 DV R + F +G+ Sbjct: 61 EDVRRYSTVPSFQIEGAFQGLSDT 84 >gi|302185112|ref|ZP_07261785.1| chromosome segregation protein SMC [Pseudomonas syringae pv. syringae 642] Length = 1162 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 DV GS S S + +G A+ISI+ + D +N Sbjct: 61 MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158 R D + + L P I + R F++ Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + ++ R + + + + + + ++ +++ E K Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 ++ L G+ + + + + D R D+ R G H DL + Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287 Query: 279 ---------DKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314 >gi|209883314|ref|YP_002287171.1| ATP-dependent endonuclease family protein [Oligotropha carboxidovorans OM5] gi|209871510|gb|ACI91306.1| ATP-dependent endonuclease family protein [Oligotropha carboxidovorans OM5] Length = 615 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63 ++++ L I+ FR + + FD HT+ VG N +GK+ I EA+ L P R FRR + Sbjct: 1 MRVRRLKITNFRGISQGSVDFD-GHTLLVGGNNIGKSTICEALDLVLGPERLFRRPVIDE 59 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110 A +E + + E + + ND Sbjct: 60 HDFHCGKYLDDDGAPIEVRIEAILVDLSDEAKRRFCGHLRRWNDTAC 106 >gi|163790193|ref|ZP_02184626.1| DNA repair protein RecN [Carnobacterium sp. AT7] gi|159874468|gb|EDP68539.1| DNA repair protein RecN [Carnobacterium sp. AT7] Length = 572 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 37/212 (17%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L I +F +L L F+ T+ G+ G GK+ I++A+ L+ GRG ++ R Sbjct: 2 LQELTIKDFAIIQNLNLSFNQGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SSEFIR 56 Query: 67 IGS-----PSFFSTFAR-----------VEGMEGLADISIKLETRDDRSVRCLQIND--V 108 G+ + FS ++ E I + +IN V Sbjct: 57 HGATKCVLEALFSLEGNTLTYELLKAYDIDSDEETVIIQRDIHRSGKN---VCRINGRLV 113 Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERR----RFLDRMVFAIDPRHRRRMIDFER 164 I + + + + + + F D+ + + + +++ Sbjct: 114 TIATLRLIGESIIDIHGQNEHQELMN--PDRHLNMLDHFGDKELIVLKNDFKETYTQYKK 171 Query: 165 LMR-----GRNRLLTEGYFDSSWCSSIEAQMA 191 + + D + E +MA Sbjct: 172 VEKAFHKWQNGEQQLAQRLDMLQYQTNEIEMA 203 >gi|118083143|ref|XP_416467.2| PREDICTED: similar to OTTHUMP00000028953 [Gallus gallus] Length = 1243 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 117/316 (37%), Gaps = 45/316 (14%) Query: 7 IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63 +K L + +F+++ + + +G NG GK+NI++A+SF+ + R S + Sbjct: 13 LKLLMVKDFKSWRGEQLIGPFMRFNCIIGPNGSGKSNIMDAVSFVLCEKISNLRVKSVRE 72 Query: 64 VTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHL 120 + G+ S+ A V+ + D K +R R I ND I +++ Sbjct: 73 LI-HGAHVGKPVSSTASVKIVYCEEDGEEKTFSRVIRDGCSEYIFNDKSITRSAYISELE 131 Query: 121 RISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171 +I LV + + + ER + +++ + ++ ++ M+ Sbjct: 132 KIGILVKARNCLIFQGTVESIAMKKPKERTQLFEQISNSW--QYAEEYERKKKKMQQAEE 189 Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 Y ++ Q A++ + ++ L++ ++ L F Sbjct: 190 DAHFNYNKKKNIAAERKQ-AKVEKEEAEHYQMLVRELNAN-------------RVQLQLF 235 Query: 232 LDGKFDQSFCALKEEYAKKLFDGR-KMD---------SMSRRTLIGPHRSDLIVDYCDKA 281 ++S +LKE +K + R K D ++ L +R + ++ Sbjct: 236 QLYHNERSIESLKESLDEKNMEARIKKDSLSTAEDTFRAKKKVLGVLNRDQQQM---ERE 292 Query: 282 ITIAHGSTGEQKVVLV 297 + S +QK + + Sbjct: 293 MKTLQASLIQQKALYI 308 >gi|300854471|ref|YP_003779455.1| putative chromosome segregation protein [Clostridium ljungdahlii DSM 13528] gi|300434586|gb|ADK14353.1| predicted chromosome segregation protein [Clostridium ljungdahlii DSM 13528] Length = 1187 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K + I F+++A L+F T VG NG GK+NI +AI L + R Sbjct: 1 MFLKNIEIRGFKSFADKTELIFKGGVTSIVGPNGSGKSNISDAIKWVLGEQSVKSLRGGK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 DV G+ + + I + + R RS IN+ R Sbjct: 61 MEDVIFAGTQYRKPVGLCQVSLTLNNEDKKLPIDYSDVTVSRRLYRSGESEYYINNTQCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D + + +D + SG +RR L+ Sbjct: 121 LKDVNELFMDTGIGREGYSIIGQGKIDALLSGKPEDRRSVLE 162 >gi|312864737|ref|ZP_07724968.1| chromosome segregation protein SMC [Streptococcus downei F0415] gi|311099864|gb|EFQ58077.1| chromosome segregation protein SMC [Streptococcus downei F0415] Length = 1179 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 21/162 (12%) Query: 5 IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 + +K + + F+++A + FD T VG NG GK+NI E++ + S + R Sbjct: 1 MFLKEIEMQGFKSFADKTRIEFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60 Query: 61 YADVTRIGSPS-----FFSTFARVEGMEGLA---DISIKLETRDDRSVRC-LQINDVVIR 111 DV G+ F ++ + I++E R+ I+ +R Sbjct: 61 MPDVIFAGTQDRSPLNFSQVTVVLDNTDNFIKDSGDEIRVERHIYRNGDSDYLIDGKKVR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145 + D L + ++ IF+ ERR + Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSRPEERRAIFE 162 >gi|225554862|gb|EEH03156.1| DNA repair protein [Ajellomyces capsulatus G186AR] Length = 1161 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 48/335 (14%), Positives = 95/335 (28%), Gaps = 68/335 (20%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63 I+ ++ F + + VG NG GK+ IL A++ G+ R S Sbjct: 121 IERVDCYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTALTLCLGGKASVTNRGQSLKS 180 Query: 64 VTRIGSPSFFSTFARVEGMEGLAD----------ISIKLETRDDRSVRCL----QINDVV 109 + G S + R++ A I + ++ Sbjct: 181 FIKEGKDSA-TIVVRIKNQGDSAYNPNEFGNSIIIERHFSRNGSSGFKIKSSSGRVVSTK 239 Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR--- 156 +D + + + P + + S E+ +F + +D +R Sbjct: 240 KSELDSITDYFALQIDNPMNVLSQDMARQFLSSSSPSEKYKFFVKGVQLEQLDQDYRLLE 299 Query: 157 ------------------------------RRMIDFERLMRGRNRLLT------EGYFDS 180 + D MR R R L + Sbjct: 300 ESIDQTEAKLSIHLDQIKDLETNRNNARAKLALSDKNETMRARVRNLRAQMAWVQVEEQE 359 Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240 + +AQ+AE KI E+ A + L+ L+ + D+ Sbjct: 360 KNRDAYDAQLAEATRKIADLESEVAKADELYQSADREYGIAAEAVLAAKSELEAQADRGK 419 Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275 A KE + + + R++ + R ++ + Sbjct: 420 VA-KESMNEIVKERRELQATQRTIRECLKTAESAI 453 >gi|330897712|gb|EGH29131.1| chromosome segregation protein SMC [Pseudomonas syringae pv. japonica str. M301072PT] Length = 1162 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 DV GS S S + +G A+ISI+ + D +N Sbjct: 61 MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158 R D + + L P I + R F++ Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + ++ R + + + + + + ++ +++ E K Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278 ++ L G+ + + + + D R D+ R G H DL + Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287 Query: 279 ---------DKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314 >gi|291540130|emb|CBL13241.1| hypothetical protein RO1_28330 [Roseburia intestinalis XB6B4] Length = 79 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 +KIK L ++ F + + + + I G+N GKT +L+ + L Sbjct: 1 MKIKKLTLNNFMAFENAEINWSDNINIICGENSTGKTTLLKVMYSL 46 >gi|150390511|ref|YP_001320560.1| chromosome segregation protein SMC [Alkaliphilus metalliredigens QYMF] gi|149950373|gb|ABR48901.1| chromosome segregation protein SMC [Alkaliphilus metalliredigens QYMF] Length = 1194 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 + +K L I F+++A+ + + F+ T VG NG GK+NI ++I L + R + Sbjct: 1 MYLKRLEIQGFKSFANKIEMNFEQGFTAVVGPNGSGKSNISDSIRWVLGEQSAKSLRGSK 60 Query: 61 YADVTRIGSP 70 D+ G+ Sbjct: 61 MEDIIFAGTA 70 >gi|117923881|ref|YP_864498.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1] gi|117607637|gb|ABK43092.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1] Length = 340 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 24/43 (55%) Query: 8 KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50 L +S F + SL L F +FVG NG GKT++++ + L Sbjct: 3 TRLTLSNFTVFESLDLTFSPGINVFVGANGTGKTHLMKLLYAL 45 >gi|304436510|ref|ZP_07396484.1| possible chromosome segregation protein Smc [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370556|gb|EFM24207.1| possible chromosome segregation protein Smc [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 1186 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 55/318 (17%), Positives = 99/318 (31%), Gaps = 42/318 (13%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 +++K L F+++ + + FD T VG NG GK+NI +A+ ++ R R Sbjct: 1 MQLKRLEAYGFKSFAERIVVQFDQGITAVVGPNGSGKSNITDAVRWVLGEQNIRMLRGLR 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111 D+ GS S + + I + R R + +ND R Sbjct: 61 AEDIIFAGSSARRALSVAEVILVFDNTDKTLPIDYEEVVVKRRLYRNGDSEIYLNDSRCR 120 Query: 112 VVDEL-------NKHLRISWL-VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + D H +S + ++ I +RR F D + + Sbjct: 121 IKDIYQLFADTGIGHDGMSIIGQNRLNDILDSRPEDRRVFFDETAG---------ITKYR 171 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223 + R L + D S I A+ + LS + Q Sbjct: 172 TRKQEALRKLRDNDTDLVRLS-----------DIMHAQATELQPLSQQAEKTKQFRGLDS 220 Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283 + S +S +E + L + + + + ++ AI Sbjct: 221 ERRSYQLTALVHQHESLQKEQESADRDLHVHEEAEIRAMQERKEKEDQKTALEEKMAAID 280 Query: 284 IAHGSTGEQKVVLVGIFL 301 + G EQK + L Sbjct: 281 LRMGEQ-EQKSTELQSKL 297 >gi|291484145|dbj|BAI85220.1| chromosome segregation SMC protein homologue [Bacillus subtilis subsp. natto BEST195] Length = 1186 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60 + +K L++ F+++ + + F T VG NG GK+NI +AI ++ R R Sbjct: 1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGK 60 Query: 61 YADVTRIGSPS 71 D+ GS S Sbjct: 61 MEDIIFAGSDS 71 >gi|302521503|ref|ZP_07273845.1| SMC domain-containing protein [Streptomyces sp. SPB78] gi|302430398|gb|EFL02214.1| SMC domain-containing protein [Streptomyces sp. SPB78] Length = 375 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 12/93 (12%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG------- 53 M++R ++ + +S +++ L T+ VG NG GK+N++EA+ L Sbjct: 1 MSHR--VRRIAVSGYKSIHEAELALTP-VTLLVGPNGAGKSNLIEAVELLGRLVDGELGM 57 Query: 54 -RGFRRASYADVTRIGSPSFFSTFARVEGMEGL 85 G R A + G+ RVE + Sbjct: 58 EVGLRGGPAA-LLHDGAKGARGIGLRVEAEDDH 89 >gi|305681507|ref|ZP_07404314.1| RecF/RecN/SMC N-terminal domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659712|gb|EFM49212.1| RecF/RecN/SMC N-terminal domain protein [Corynebacterium matruchotii ATCC 14266] Length = 679 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Query: 5 IKIKFLNISEFRNYAS---LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54 + + L + FR ++ L + F G N GKT I++ I +L R Sbjct: 1 MYLSKLTLKNFRQFSEEDPLEVDFQPGVVALAGPNDSGKTAIIDGIRYLLRTR 53 >gi|239817025|ref|YP_002945935.1| hypothetical protein Vapar_4055 [Variovorax paradoxus S110] gi|239803602|gb|ACS20669.1| hypothetical protein Vapar_4055 [Variovorax paradoxus S110] Length = 494 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 66/429 (15%), Positives = 127/429 (29%), Gaps = 101/429 (23%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--------- 55 +++ I+ FR+ + +Q T +G N GK+N+L A+ L+P G Sbjct: 1 MRLASFQITNFRSINDSGSIDTSQITAILGRNDSGKSNLLRALHSLNPAEGLAELSPIKD 60 Query: 56 ---FRR-------------------ASYADVTRIGSPSFFSTF---------ARVEGMEG 84 RR + A++ ++ + AR G+EG Sbjct: 61 FPRHRRLEECQGDTPVVATRWALEDSERAELVQMLPRAAKVRHVTAGRGYGTARWSGLEG 120 Query: 85 LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL 144 L D+S+ + + + + + + + + + R Sbjct: 121 LGDLSLDVSDIKAKVRKIVPAVKAAAEKLADDARAMLEQAADAFDAAMILSPDYIR---- 176 Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ----------MAELG 194 A+ + + M + L++ + +E +A Sbjct: 177 -WSAGAV-----AVLQSLRKAMAAADAELSDKQ--EQMLAELEEMARAIANDTPALARAK 228 Query: 195 VKINIA--RVEMINAL-----SSLIMEYVQKENFPH--------IKLSLTGFLDGKFDQS 239 + R ++ I E++ ++ + KL LD + Q Sbjct: 229 QWVLDKLPRFVYVDEYPALPGRQNIAEHLARKGWGQDAPGQRNFEKLCKAAGLDPQQLQE 288 Query: 240 FCALKEEYAKKLFDGR--------------KMDSMSRRTLIGPHRSDLIVDYC---DKAI 282 ++ + R + R L GP+ L+ D D + Sbjct: 289 LLEKNDQATRNQLANRAGSVVTAEIRRLWKDRELKVRFNLDGPYMDTLVSDPNRAYDVEV 348 Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALF-RIVTD 340 + S G Q + ++T G ILLLDE HL + L D Sbjct: 349 NLDERSRGFQWFFSF-----YVTFFADTKGAGDAILLLDEPGLHLHARSQADLLAHFEQD 403 Query: 341 IGSQIFMTG 349 +QI T Sbjct: 404 FANQIVYTT 412 >gi|313891627|ref|ZP_07825234.1| chromosome segregation protein SMC [Dialister microaerophilus UPII 345-E] gi|313119905|gb|EFR43090.1| chromosome segregation protein SMC [Dialister microaerophilus UPII 345-E] Length = 1185 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 21/158 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60 +K+ L + F+++A + F T+ VG NG GK+NI +A+ L R R Sbjct: 1 MKLLRLTMQGFKSFADKTTIEFSDGMTVIVGPNGCGKSNISDAVRWVLGEQNVRNLRGQK 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111 D+ GS ++ +G + + + R RS IN R Sbjct: 61 SEDIIFSGSETRNTKQVAEVTMVLDNEDGKLPLQTAEVTISRRVFRSGESEFYINKRSCR 120 Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141 + D L K +D++ + ERR Sbjct: 121 LKDIHELLANSGLGKGTLAIIGQNRVDQVLTAQPEERR 158 >gi|310658343|ref|YP_003936064.1| atpas [Clostridium sticklandii DSM 519] gi|308825121|emb|CBH21159.1| ATPas [Clostridium sticklandii] Length = 341 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 43/101 (42%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64 + IK + ++ F + L + F IF+G+N GKT+I++ I + + + Sbjct: 1 MSIKKIELTNFTVFEDLNIEFCDGINIFIGENATGKTHIMKLIYSACKATNPKDSFSQKI 60 Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105 P + + EG++ +K+ ++ + + I Sbjct: 61 VNTFKPEDYKISRLISRKEGISKSKVKITAIKNKIEQNIGI 101 >gi|259503530|ref|ZP_05746432.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259168608|gb|EEW53103.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 1188 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 78/212 (36%), Gaps = 23/212 (10%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60 +++ L I F+++A+ + F+ T VG NG GK+NI+EAI ++ + R Sbjct: 1 MRLLSLTIDGFKSFANKTTIKFEEGMTGIVGPNGSGKSNIIEAIRWVMGEQSARHLRGDK 60 Query: 61 YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDD-----RSVRCL 103 DV GS F ++ + I+ KL D + Sbjct: 61 MVDVIFNGSAGRVPLNRALVSITFDNSDHYLASDFNELTITRKLFRNGDSEYLLNGNKVR 120 Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163 + V + + L + ++ IF+G +RR ++ + ++R+ E Sbjct: 121 LKDIVDLFIDSGLGRESFSIISQGRIEAIFNGKPEDRRAIIETVAG--VAKYRKNKQTAE 178 Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195 R + L S +S +A+ Sbjct: 179 RRLEQTMDNLNRVNDIISELASQLEPLADQSA 210 >gi|255726652|ref|XP_002548252.1| structural maintenance of chromosome 3 [Candida tropicalis MYA-3404] gi|240134176|gb|EER33731.1| structural maintenance of chromosome 3 [Candida tropicalis MYA-3404] Length = 1193 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 89/272 (32%), Gaps = 23/272 (8%) Query: 5 IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61 + IK + I F+ Y ++ + + VG NG GK+N AI LS Sbjct: 1 MHIKKIIIQGFKTYKNVTTIDLLSPHCNVVVGRNGSGKSNFFAAIRFVLSDAYTHMSREE 60 Query: 62 AD-VTRIGSPSFFSTFARV-----EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 + GS + S + + +G + I + ++ D Sbjct: 61 RQGLIHEGSGTVMSAYVEIIFDNSDGRFPINKNEISIRRTIGLKKDDYSLDGKSATRSDI 120 Query: 116 LNKHLRISWLVPSMDRIFSGL-------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 +N + + I S + R + ++ + + M Sbjct: 121 MNLLESAGFSRSNPYYIVPQGRITSLTNSKDHERLNLLKEVSGANVFENKLKESMKEMNQ 180 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228 N L D + S E ++ +L +I ++ L + ++ F L Sbjct: 181 SN--LKRARIDETLISI-EERLKDL--QIESTDLKNFQKLDKQ-KKILEFNIFDREYNEL 234 Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260 L+ + ++ A+K+E + L D K + + Sbjct: 235 NVSLE-ELEERQQAMKDETKQDLIDLEKREKL 265 Score = 38.0 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 7/81 (8%) Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337 D+ I S G++ + + + A AP L DEI ++LD R ++ + Sbjct: 1082 NDEQQRIEQLSGGQKSLCAIALIFA-----IQNCDPAPFYLFDEIDSNLDTQYRTSVANL 1136 Query: 338 VTDIGS--QIFMTGTDKSVFD 356 + + S Q T + Sbjct: 1137 IKSLSSEAQFICTTFRPELLQ 1157 >gi|218441463|ref|YP_002379792.1| exonuclease SbcC [Cyanothece sp. PCC 7424] gi|218174191|gb|ACK72924.1| exonuclease SbcC [Cyanothece sp. PCC 7424] Length = 1007 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 77/240 (32%), Gaps = 35/240 (14%) Query: 9 FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67 L + F +Y L F HT G NG GK+++LEAI++ G R AS DV Sbjct: 5 HLTLKNFLSYQEASLDFRGLHTACVCGANGAGKSSLLEAITWAIWGES-RAASEDDVIHT 63 Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-------INDVVIR-VVDELNKH 119 G+ + F + + I + + + IN +R + + Sbjct: 64 GAENVRVDFEFICNSQCYRIIRTRQRGKGGSLDFQIASSSGFKTINGKGLRGTQEAIISS 123 Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179 L++ F + R+ D + + R + D Sbjct: 124 LKL------DYDTFINSAYLRQGRADEFM------------------QRRPNERKQILAD 159 Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239 E Q+A+ ++ + L +K + ++ ++ + +Q Sbjct: 160 LLKLDQYE-QLADRAKDLSKLYKGQLQQLEESKKRLTEKLEEKEVIVTQKFTIEQEIEQG 218 >gi|319787256|ref|YP_004146731.1| DNA repair protein RecN [Pseudoxanthomonas suwonensis 11-1] gi|317465768|gb|ADV27500.1| DNA repair protein RecN [Pseudoxanthomonas suwonensis 11-1] Length = 580 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 77/246 (31%), Gaps = 38/246 (15%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + L + +F + L F T+ G+ G GK+ +++A+ FLS R + + V R Sbjct: 2 LTHLALKDFAVVRATELEFGPGMTVISGETGAGKSLLVDALGFLSGLR-----ADSGVVR 56 Query: 67 IGSPSFFSTFA--------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVI-- 110 GS E E ++ R D R IN + Sbjct: 57 HGSERAELAAGFDLSGNALARQWLREQELDEDDEQCQLRRVIRADGGSRA-WINGRPVTL 115 Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRG 168 + EL L + + S LD A R D++ L+ Sbjct: 116 AQLGELAGLLVEIHGQHEHQSLLARASQL--ALLDAHARNDAERAAVREAAADWQSLLDE 173 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL-----------GVKINIARVEMINALSSLIMEYVQ 217 R L + G +E Q+AEL + + R L + E + Sbjct: 174 REALQSRGDV-GDRIGWLEHQLAELEREDLDPAALEALDLAHRRQANAAGLIAACEEALA 232 Query: 218 KENFPH 223 + + Sbjct: 233 RIDGDE 238 >gi|293364020|ref|ZP_06610756.1| chromosome segregation protein SMC [Mycoplasma alligatoris A21JP2] gi|292552510|gb|EFF41284.1| chromosome segregation protein SMC [Mycoplasma alligatoris A21JP2] Length = 981 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 14/124 (11%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60 +K+ + F+++A + L FD T VG NG GK+NI +AI L R + Sbjct: 1 MKLIKIEAHGFKSFADPVTLHFDGGVTGIVGPNGSGKSNINDAIKWVLGEQSSKELRGDN 60 Query: 61 YADVTRIGSP-----SFFSTFARVEGMEGLAD-----ISIKLETRDDRSVRCLQINDVVI 110 ADV GS + EG + I+I + IN + Sbjct: 61 MADVIFAGSKTTKSLDRAEVTLTFDNREGSSSHPSEIITISRVLERGKGANQYYINGELC 120 Query: 111 RVVD 114 R D Sbjct: 121 RHKD 124 >gi|212702163|ref|ZP_03310291.1| hypothetical protein DESPIG_00173 [Desulfovibrio piger ATCC 29098] gi|212674368|gb|EEB34851.1| hypothetical protein DESPIG_00173 [Desulfovibrio piger ATCC 29098] Length = 558 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 5 IKIKFLNISEFRNYASLRLVFDA-----QHTIFVGDNGVGKTNILEAISFLSPG 53 ++I +L + F++Y + F + G NG GKT+ LEA+ G Sbjct: 1 MRISYLKLVNFKSYKNQIFEFPPSREDKNLILVGGLNGFGKTSFLEALYLGLYG 54 >gi|218295508|ref|ZP_03496321.1| SMC domain protein [Thermus aquaticus Y51MC23] gi|218244140|gb|EED10666.1| SMC domain protein [Thermus aquaticus Y51MC23] Length = 1007 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 85/269 (31%), Gaps = 21/269 (7%) Query: 6 KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62 +I L + F+++A L F T +G NG GK+N++EAI F++ R R Sbjct: 5 RIDRLTLQGFKSFAERTVLDFPDPITGIIGPNGSGKSNLVEAIRFVTGARAQELRGQELK 64 Query: 63 D-VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121 + + G + FA V + +E R + ++N + + L HL Sbjct: 65 AFLFQGGEGKPPAGFAEVRLELSRGRERLLVERRIEGEKSLFRVNGRPM-SLKALALHLS 123 Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181 + L I + V H + + + Sbjct: 124 GTGLGRGGYAIVGQGEVGALLEAPEEVLL---SHLEEAAGLKPVAEAARATEIKLKEALE 180 Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS-- 239 + E ++AEL AR E + + + + + Sbjct: 181 LLQAREKELAEL-----KARAEALGKEAERAKRAQELAALALALKRSLLLARKEEAEGEV 235 Query: 240 ------FCALKEEYAKKLFDGRKMDSMSR 262 ALKEE A+ L ++ + Sbjct: 236 EALRARLLALKEEEAELLSRREALERERK 264 >gi|70729273|ref|YP_259010.1| chromosome segregation SMC protein [Pseudomonas fluorescens Pf-5] gi|68343572|gb|AAY91178.1| chromosome segregation SMC protein [Pseudomonas fluorescens Pf-5] Length = 1162 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 48/325 (14%), Positives = 105/325 (32%), Gaps = 46/325 (14%) Query: 5 IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60 +++K + ++ F+++ + F + VG NG GK+NI++A+ ++ S + R S Sbjct: 1 MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60 Query: 61 YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107 DV GS S S + +G A+ISI+ + D +N Sbjct: 61 MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYFLNG 119 Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158 R D + + L P I + R F++ Sbjct: 120 AKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169 Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 + ++ R + + + + + + ++ +++ E K Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229 Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY- 277 ++ G+ + + + + + + R D+ R G H + Sbjct: 230 AQLSALRWQALNEQVGQRESVIGSQEVSFEALVAEQRNADAAIERFRDGHHELSERFNLV 289 Query: 278 ------CDKAITIAHGS--TGEQKV 294 I S G+Q++ Sbjct: 290 QGRFYSVGGDIARVEQSIQHGQQRL 314 >gi|91976764|ref|YP_569423.1| ATP-dependent OLD family endonuclease [Rhodopseudomonas palustris BisB5] gi|91683220|gb|ABE39522.1| ATP-dependent endonuclease of the OLD family-like [Rhodopseudomonas palustris BisB5] Length = 669 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 59/360 (16%), Positives = 117/360 (32%), Gaps = 81/360 (22%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-----A 59 + +K + ++ FR++ + T+FVG+N GK+N ++A+ L+ G RR + Sbjct: 1 MYLKNMKLNSFRSFDQGEIELQKDLTVFVGENNGGKSNAIDAVRLLTTPLGGRREIYCES 60 Query: 60 SYADVTRIGSP----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115 + R S FA + + IS + ++ L+ + Sbjct: 61 TD---VRFQSTTTYFELEGCFAELSTGQQGRFISAATDASLTQARFGLRFDGAR------ 111 Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNRLL 173 + + W G S E + + + D +R + N Sbjct: 112 -SGIKPVLW------AGKEGNSAEP-------GCHEMVRHVYLPPLRDAKRSLASGNPTR 157 Query: 174 TEGYFDSSWCSSIEAQMA-ELG--------VKINIARVEMINALSSLIMEYVQKENFPHI 224 + + AQ+A ELG VK++ A + ++AL+S + F Sbjct: 158 IMALLNHFLEGTTPAQLAKELGRTHSHDVLVKVDGAVEKGLSALTSGVRRQTASLGF--- 214 Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284 D++ + + KL D R + G ++L+ Sbjct: 215 ----------STDEALVDIARDLRFKLADHGVDPEDLRYS--GHGYANLLFM-------- 254 Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344 ++ L + + L++E AHL + A+ + D Q Sbjct: 255 ----------AIIA-----VELEKVRSADLTLFLVEEPEAHLHPQLQAAVLAFLRDQAEQ 299 >gi|262282717|ref|ZP_06060485.1| DNA repair protein RecN [Streptococcus sp. 2_1_36FAA] gi|262262008|gb|EEY80706.1| DNA repair protein RecN [Streptococcus sp. 2_1_36FAA] Length = 552 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 32/226 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 + ++I F + L FD T+ G+ G GK+ I++A++ + R + DV R Sbjct: 2 LLEISIKNFAIIEEISLHFDQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56 Query: 67 IGS-------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113 G+ S +G+E ++ I+ E ++N ++ + Sbjct: 57 HGATKAEIEGLFSLENSSAIEAIFEEQGLELTDELIIRREI-LQNGRSVSRVNGQLVNLS 115 Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169 + + D+ F D A+ ++ + +L + Sbjct: 116 VLKAIGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDEDFVALKAFYQETFDHYRQLRKQV 175 Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMIN 206 L + +E QMAE+ ++ R ++N Sbjct: 176 LTLHKNQEEHKARIEMLEFQMAEIDSASLKTGEDKALHQERDRLLN 221 >gi|238762723|ref|ZP_04623692.1| hypothetical protein ykris0001_8990 [Yersinia kristensenii ATCC 33638] gi|238699028|gb|EEP91776.1| hypothetical protein ykris0001_8990 [Yersinia kristensenii ATCC 33638] Length = 808 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56 ++ +I ++F+ + +FR ++L D + TI VG N GKT+IL A+ FL+ G F Sbjct: 49 LSGQISLRFVELCQFRRLGKVQLEIDPKTTILVGANNSGKTSILAALRHFLADGSSF 105 >gi|156088035|ref|XP_001611424.1| RecF/RecN/SMC N terminal domain containing protein [Babesia bovis] gi|154798678|gb|EDO07856.1| RecF/RecN/SMC N terminal domain containing protein [Babesia bovis] Length = 1205 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 23/170 (13%) Query: 5 IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 + IK +N+ FR Y F + + VG NG GK+N+L A+SF A + Sbjct: 1 MYIKEVNLCGFRTYRDQCSFQFSKGYNVIVGQNGSGKSNVLLAVSF---------ALAEN 51 Query: 64 VTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122 + + + E E A++ + + D R + +D +R L+ Sbjct: 52 LEQTNREYYLYRGIESSEDEEYTANVEVIFDISSDSRARSVVDDDGELR--------LKR 103 Query: 123 SWLVPSMDRIFSG---LSMERRRFLDRM-VFAIDPRHRRRMIDFERLMRG 168 + + +G + R+ L+ + + + D +++ Sbjct: 104 IFSRSKDLYLVNGRQMSRKDYRQLLESVNLIPFSKQSASYRNDLHFIVKQ 153 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 25/221 (11%) Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199 R D + + +F ++ R +T + ++ SI+A ++ + Sbjct: 957 RCAKFDLSSHGAEDEYAALRAEFT-GLKDRQERMTRSH--AAILKSIQALKSQKDANLVQ 1013 Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259 ++ LS+ E V + + + L E + DS Sbjct: 1014 MLSQLNQKLSATFAELVTGGRLQAVLIRRDASVGDISSSVAVCLPECFV---------DS 1064 Query: 260 MSRRTLIGPHRSDLIVDY--CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317 T G DL V + + + + S G++ +V + LA RL AP Sbjct: 1065 PDEETFTGL---DLQVSFSPDAERMQLYQLSGGQKTLVSLAFILAAQRL-----HTAPFY 1116 Query: 318 LLDEISAHLDEDKR---NALFRIVTDIGSQIFMTGTDKSVF 355 LLDEI A LD++ R + L + GSQ +T + Sbjct: 1117 LLDEIDAALDDNYRLNVSQLLSRQCNEGSQCILTTFRPELL 1157 >gi|58581651|ref|YP_200667.1| recombination protein N [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426245|gb|AAW75282.1| recombination protein N [Xanthomonas oryzae pv. oryzae KACC10331] Length = 600 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 96/268 (35%), Gaps = 39/268 (14%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ L+I +F + L F T+ G+ G GK+ +++A+ FLS R + + V R Sbjct: 48 LRHLSIKDFAVVRATELEFGPGMTVVSGETGTGKSLMVDALGFLSGLR-----ADSGVVR 102 Query: 67 IGSPSF-----FSTFARVEGMEGLADISIKLE--------TRDDRSVRCLQINDVVI--R 111 G+ F A G+ LAD + E R D R IN + Sbjct: 103 HGADRAELSAEFQLPAEHPGLRWLADNELDDEAQCQLRRIIRADGGSRA-WINGRPVTSS 161 Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168 + EL L + + S LD R +D R+ ++ L+ Sbjct: 162 QLAELASRLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQLDQV-RQASQRWQALLDE 218 Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL-----------GVKINIARVEMINALSSLIMEYVQ 217 R+ L +G S +E Q+AEL + +N R AL Q Sbjct: 219 RDTLSAQGDV-SDRIGFLEHQLAELEREDLDPAAIAALDVNHRRQAHATALIGTCDSVAQ 277 Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKE 245 + N +L D + D + A E Sbjct: 278 QLNGDEGASALGLLQDSRHDIAHVAEHE 305 >gi|328542225|ref|YP_004302334.1| SMC domain protein [polymorphum gilvum SL003B-26A1] gi|326411975|gb|ADZ69038.1| SMC domain protein [Polymorphum gilvum SL003B-26A1] Length = 573 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 53/388 (13%), Positives = 108/388 (27%), Gaps = 62/388 (15%) Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA--SYAD 63 +I+ + I+ FR S A +G GK+ IL+A+ R R + AD Sbjct: 3 RIRKVEINNFRCIRSFVWYPSAGINCLIGPGDSGKSTILDALDLCLGAR--RTLQFTDAD 60 Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123 + + + ++ L+ + + +N + DE K L Sbjct: 61 FYNLNVDEPITITLTIGALDEA------LKNIESYGLFLRGLNAATGEMEDEPEKGLETV 114 Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183 ++ G ++P + RN + + Sbjct: 115 LF----LQLTVGSD-------------LEPVWTLVSERAKAQNATRNLTWKDRV---ALA 154 Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243 + +AE + R ++N L+ + D + L Sbjct: 155 PTRIGALAE--SNLGWRRGSVLNRLTDEKADASAALAKAARDARSAFGTDAE-----KQL 207 Query: 244 KEEYAKKLFDGRKMDSMSRRT--------LIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295 E R++ + + + D G Sbjct: 208 GETLKLVGEAARELGIDIGANARALLDAHSVTFSGGTISLHDADGVPLRGLG-------- 259 Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS----QIFMTGTD 351 + + L A L + +LL+DE+ L+ + + + Q+F T Sbjct: 260 IGSMRLLIAGLQRKAAETSSMLLVDELEHGLEPHRIIRFLGSLGAKETLPPLQVFATTHS 319 Query: 352 KSVFDSLNETAKFMRI----SNHQALCI 375 L+ A+ + + H A C+ Sbjct: 320 PVALRELSG-AQLFVVRETATGHSATCV 346 >gi|312136017|ref|YP_004003355.1| SMC domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311776068|gb|ADQ05555.1| SMC domain protein [Caldicellulosiruptor owensensis OL] Length = 658 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 23/45 (51%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49 + + + I FR+ + + F I VG N GK+NI++AI Sbjct: 1 MYLHRVIIKNFRSIEYIDITFAKGKNIIVGKNNCGKSNIIKAIDL 45 >gi|145589876|ref|YP_001156473.1| hypothetical protein Pnuc_1696 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048282|gb|ABP34909.1| hypothetical protein Pnuc_1696 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 641 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 5 IKIKFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLS 51 +K+ ++I +R+ +L L T +FVG N GK+NIL+AI+ L+ Sbjct: 1 MKLTNIDIKNYRSIDTLSLSVRDGVTSVFVGMNESGKSNILKAINLLA 48 >gi|47157021|gb|AAT12384.1| CUT3-like chromosome segregation protein-like protein [Antonospora locustae] Length = 186 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 4/114 (3%) Query: 3 NRIKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58 + +K+ + I+ F+++ + D T+ VG NG GK+NI++A+ F+ R R Sbjct: 2 HSLKLTTIRINNFKSFEGEHEISGLDHSLTVIVGPNGSGKSNIIDAVLFVLGFRAKKMRH 61 Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112 A D+ + + G+ +++ E + R N V Sbjct: 62 AVQTDIIYKDAERRSMCSVELVFDNGVTMFTVRRELYISKKSRYFLTNQEVKNT 115 >gi|258611435|ref|ZP_05711507.1| LOW QUALITY PROTEIN: DNA repair protein RecN [Listeria monocytogenes FSL N3-165] gi|258600007|gb|EEW13332.1| LOW QUALITY PROTEIN: DNA repair protein RecN [Listeria monocytogenes FSL N3-165] Length = 479 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%) Query: 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66 ++ + I F SL L F T+ G+ G GK+ I++A+ L GRG AD R Sbjct: 2 LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56 Query: 67 IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112 G + A +E +D + LE RS + +IN ++ Sbjct: 57 HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116 Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168 + ++ L + + RF + +++ +++ + + Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176 Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189 + + Q Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197 >gi|159029839|emb|CAO90893.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 1009 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 99/268 (36%), Gaps = 30/268 (11%) Query: 9 FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEA