RPSBLAST alignment for GI: 254780766 and conserved domain: TIGR00611
>gnl|CDD|161957 TIGR00611, recf, recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 365
Score = 151 bits (384), Expect = 2e-37
Identities = 97/350 (27%), Positives = 165/350 (47%), Gaps = 13/350 (3%)
Query: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
+ L +++FRNY ++ L + VG NG GKTN+LEAI +L+ GR R + +
Sbjct: 2 YLSRLELTDFRNYDAVDLELSPGVNVIVGPNGQGKTNLLEAIYYLALGRSHRTSRDKPLI 61
Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
R G+ +F RV + +++I LE + + ++N + +L L +
Sbjct: 62 RFGAEAFV-IEGRVSKGDR--EVTIPLEGLLKKKGKKAKVNIDGQDKLSDLAGLLPMQLF 118
Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDSSW 182
P + G RRRFLD +F ++P + D++R+++ RN L + Y D +
Sbjct: 119 APEDLTLVKGSPKYRRRFLDWGLFQVEPVYLSAWSDYQRVLKQRNAALKQAQRQYGDRTT 178
Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
++Q+AELG K++ R E I L + Q SL+ F G+
Sbjct: 179 LEVWDSQLAELGAKVSAWRAEFIEKLEPEAQKAHQ--LLLPELESLSLFYRGELW----D 232
Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
+ +YA+ L + D TL+GPHR DL + S G+ + + + + LA
Sbjct: 233 KETDYAEALARNFERDLERGYTLVGPHRDDLRF-RLNGLPVEDFASQGQLRSLALALRLA 291
Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
L+ G PILLLD++++ LD+ +R L ++ +G Q+F+T
Sbjct: 292 EGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISL 341