HHsearch alignment for GI: 254780767 and conserved domain: COG0859

>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].
Probab=99.02  E-value=1.2e-07  Score=70.36  Aligned_cols=317  Identities=13%  Similarity=0.051  Sum_probs=157.8

Q ss_pred             CCEEEEEECCCCHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHH
Q ss_conf             7459999768214789-999999999738998399997178999478806504445311013674664599999999998
Q gi|254780767|r    3 SLKIAVIAGEISGDLL-AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTV   81 (383)
Q Consensus         3 ~mki~i~aGE~SGD~~-~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~   81 (383)
T Consensus         1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P-~a~i~~~~~~~~~~i-~~~~p~I~~vi~~---~~~~~~-~~~~~~~~l~   74 (334)
T COG0859           1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYP-NAKIDVLVPKGFAPI-LKLNPEIDKVIII---DKKKKG-LGLKERLALL   74 (334)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHH-HHCCCCHHEEEEC---CCCCCC-HHHHHHHHHH
T ss_conf             907999955740137769999999998789-977999955431467-7559524168511---211212-1389999999


Q ss_pred             HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCC
Q ss_conf             61001288868985117765799998663013463111100221100366355799999864015677422320025531
Q gi|254780767|r   82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPP  161 (383)
Q Consensus        82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~  161 (383)
T Consensus        75 ~~lr~~~yD~vidl~---~~~ksa~l~~~--~~~~~r~--g~---~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~-l  141 (334)
T COG0859          75 RTLRKERYDAVIDLQ---GLLKSALLALL--LGIPFRI--GF---DKKSARELLLNKFYPR--LDKPEGQHVVERYLA-L  141 (334)
T ss_pred             HHHCCCCCCEEEECH---HHHHHHHHHHH--HCCCCEE--CC---CCHHHHHHHHHHCCCC--CCCCCHHHHHHHHHH-H
T ss_conf             983146867899740---25889999997--3898363--14---5077777777630244--565402459999999-9


Q ss_pred             EEECCCCCCC--C--CCCCCCHHHHHHHCCCCCCCCEEEEEEC-CCCCCHHHHCC--CHHHHHHHHHHCCCCCEEEECCC
Q ss_conf             4763882112--2--1001355888976187655650599853-87430123051--11899987640273512620166
Q gi|254780767|r  162 TTFVGHPLSS--S--PSILEVYSQRNKQRNTPSQWKKILLLPG-SRAQEIYKILP--FFESAVASLVKRNPFFRFSLVTV  234 (383)
Q Consensus       162 ~~fVGHPl~d--~--~~~~~~~~~~~~~~~~~~~~~~I~llPG-SR~~EI~~~lP--~~l~~~~~l~~~~~~~~~~i~~~  234 (383)
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~pg~s~~~--~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~  216 (334)
T COG0859         142 LEDLGLYPPPEPQLDFPLPRPPIELAKNLAKFD-RPYIVINPGASRGS--AKRWPLEHYAELAELLIAKG--YQVVLFGG  216 (334)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCCC--CCCCCHHHHHHHHHHHHHCC--CEEEEEEC
T ss_conf             876079876677555455547888986542037-98799964734667--78899999999999999769--98999408


Q ss_pred             CCHHHHHHHHHHHCCCCCEE--EEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEE-----EEECCC
Q ss_conf             33688999999604888505--52055203578876355233115668887627530254057741000-----010246
Q gi|254780767|r  235 SSQENLVRCIVSKWDISPEI--IIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNF-----FIFYIK  307 (383)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~-----i~~lik  307 (383)
T Consensus       217 ~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~I~~DSg~~HlAaA~~~P~I~iyg~t~~~~~~p~~~~~~~~~  296 (334)
T COG0859         217 PDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLVIGNDSGPMHLAAALGTPTIALYGPTSPAFTPPPDPKLPGIS  296 (334)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             78999999999736766121799999999999966989991488799999873998899988987555788665443443


Q ss_pred             CCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf             761023024407842612420548989999999998449
Q gi|254780767|r  308 TWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQD  346 (383)
Q Consensus       308 ~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d  346 (383)
T Consensus       297 ~~~~~~~~~~~~---~~~~~~~~i~~~~v~~~~~~~~~~  332 (334)
T COG0859         297 GNLDCSPCKPSG---GHHECLKDIEPEKVLEAAEALLAT  332 (334)
T ss_pred             CCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             555555256678---755564559989999999987641