HHsearch alignment for GI: 254780767 and conserved domain: COG1519
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane].
Probab=98.81 E-value=4.9e-06 Score=59.80 Aligned_cols=320 Identities=13% Similarity=0.136 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEC----CHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 99999999997389983999971----78999478806504445311013674664599999999998610012888689
Q gi|254780767|r 18 LAGDLIKSLKEMVSYPINLVGVG----GPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLL 93 (383)
Q Consensus 18 ~~a~li~~Lk~~~~~~~~~~giG----G~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi 93 (383)
T Consensus 64 a~~pLv~~l~~~~P-~~~ilvTt~T~Tg~e~a~~---~~~~~v~h~YlP~-D----------~~~~v~rFl~~~~P~l~I 128 (419)
T COG1519 64 AALPLVRALRERFP-DLRILVTTMTPTGAERAAA---LFGDSVIHQYLPL-D----------LPIAVRRFLRKWRPKLLI 128 (419)
T ss_pred HHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHH---HCCCCEEEEECCC-C----------CHHHHHHHHHHCCCCEEE
T ss_conf 88999999997689-9878999527637999998---7698708996576-7----------668899999742898799
Q ss_pred EECHHHHHHHHHHHHHHHCCCCCCEEEEC------CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf 85117765799998663013463111100------221100366355799999864015677422320025531476388
Q gi|254780767|r 94 IVDNPDFTHRVAKRVRKKMPNLPIINYVC------PSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGH 167 (383)
Q Consensus 94 ~iD~pgFnl~lak~lkk~~~~ipvi~yv~------PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGH 167 (383)
T Consensus 129 i~EtElW-Pnli~e~~~~--~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GN 205 (419)
T COG1519 129 IMETELW-PNLINELKRR--GIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGN 205 (419)
T ss_pred EEECCCC-HHHHHHHHHC--CCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCEEEECC
T ss_conf 9800136-7899999876--998999942302325777987789999999742333454888899999649861386333
Q ss_pred CCCCCCCCCCC---HHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEEC-CCCCHHHHHHH
Q ss_conf 21122100135---588897618765565059985387430123051118999876402735126201-66336889999
Q gi|254780767|r 168 PLSSSPSILEV---YSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLV-TVSSQENLVRC 243 (383)
Q Consensus 168 Pl~d~~~~~~~---~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~-~~~~~~~~~~~ 243 (383)
T Consensus 206 lKfd~~~~~~~~~~~~~~r~~l~~--~-r~v~iaaSTH~GEeei----~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~ 278 (419)
T COG1519 206 LKFDIEPPPQLAAELAALRRQLGG--H-RPVWVAASTHEGEEEI----ILDAHQALKKQFPNLLLILVPRHPERFKAVEN 278 (419)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCC--C-CCEEEEECCCCCHHHH----HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 242377873248999999985088--8-8559995477863889----99999999963899569991587556799999
Q ss_pred HHHHCCC-------------CCEEEE--ECCCCHHHHHHHHHHHCC------CHHHHHHHHHHCCCEEEECCCCCCEEEE
Q ss_conf 9960488-------------850552--055203578876355233------1156688876275302540577410000
Q gi|254780767|r 244 IVSKWDI-------------SPEIII--DKEQKKQVFMTCNAAMAA------SGTVILELALCGIPVVSIYKSEWIVNFF 302 (383)
Q Consensus 244 ~~~~~~~-------------~~~i~~--~~~~~~~~l~~sd~ai~~------SGTaTLE~al~g~P~IV~Yk~~~lt~~i 302 (383)
T Consensus 279 l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~ 358 (419)
T COG1519 279 LLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIA 358 (419)
T ss_pred HHHHCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHCCCCEEECCCCCCHHHHH
T ss_conf 99975981886137899988886899962868999973432799877446778988223787089788777513589999
Q ss_pred EECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 1024676102302440784261242054898999999999844989999999999999998389999899999999986
Q gi|254780767|r 303 IFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQV 381 (383)
Q Consensus 303 ~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~ 381 (383)
T Consensus 359 ~~l~~~ga~---------------~~v~-~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~--g-al~r~l~~l~~~ 418 (419)
T COG1519 359 ERLLQAGAG---------------LQVE-DADLLAKAVELLLADEDKREAYGRAGLEFLAQNR--G-ALARTLEALKPY 418 (419)
T ss_pred HHHHHCCCE---------------EEEC-CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHC
T ss_conf 999866986---------------9977-8899999999970788999999998999999867--7-999999975511