HHsearch alignment for GI: 254780767 and conserved domain: COG1817
>COG1817 Uncharacterized protein conserved in archaea [Function unknown].
Probab=99.17 E-value=8.4e-09 Score=78.05 Aligned_cols=305 Identities=16% Similarity=0.148 Sum_probs=181.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE--E--EECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH
Q ss_conf 459999768214789999999999738998399--9--971789994788065044453110136746645999999999
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINL--V--GVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~--~--giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383)
T Consensus 1 mkVwiDI~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~~v~~LLd~ygf~----~~~Igk~g~~tl~~Kl~~~~eR~~~ 75 (346)
T COG1817 1 MKVWIDIGNPPHVHFFKNLIWELEKK-GHEVLITCRDFGVVTELLDLYGFP----YKSIGKHGGVTLKEKLLESAERVYK 75 (346)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHC-CEEEEEEEEECCCHHHHHHHHCCC----EEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 93799758961023899999999857-849999985127588999983997----0764045774478999999999999
Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCC
Q ss_conf 9861001288868985117765799998663013463111100-221100366355799999864015677422320025
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC-PSVWAWREGRARKMCAYINQVISILPFEKEVMQRLG 158 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~-PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~ 158 (383)
T Consensus 76 L~ki~~~~kpdv~i~~~s~~----l~rvaf--gLg~psIi~~D~ehA~~q-n---kl~~Pla~~ii~P~~~~~~~~~~~G 145 (346)
T COG1817 76 LSKIIAEFKPDVAIGKHSPE----LPRVAF--GLGIPSIIFVDNEHAEAQ-N---KLTLPLADVIITPEAIDEEELLDFG 145 (346)
T ss_pred HHHHHHHCCCCEEEECCCCC----HHHHHH--HCCCCEEEECCCHHHHHH-H---HCCHHHHHHEECCCCCCHHHHHHHC
T ss_conf 99987522985575227810----556776--528863896487547778-6---3000244215064344357788708
Q ss_pred CCCEEECCCCCCCCC---CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCC---HHHHCCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 531476388211221---00135588897618765565059985387430---123051118999876402735126201
Q gi|254780767|r 159 GPPTTFVGHPLSSSP---SILEVYSQRNKQRNTPSQWKKILLLPGSRAQE---IYKILPFFESAVASLVKRNPFFRFSLV 232 (383)
Q Consensus 159 ~~~~~fVGHPl~d~~---~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~E---I~~~lP~~l~~~~~l~~~~~~~~~~i~ 232 (383)
T Consensus 146 ~~p~~i~~~~giae~~~v~~f~pd~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~-g--iV~ip 222 (346)
T COG1817 146 ADPNKISGYNGIAELANVYGFVPDPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKY-G--IVLIP 222 (346)
T ss_pred CCCCCEECCCCEEEEEECCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHC-C--EEEEC
T ss_conf 89552113566267731026798878998758887986699964344542343322256688899988757-2--89955
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEE
Q ss_conf 66336889999996048885055205520357887635523311566888762753025405774100001024676102
Q gi|254780767|r 233 TVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCA 312 (383)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~ 312 (383)
T Consensus 223 r~~~~~----eife~~~n~i-~pk~~vD~l~Llyya~lvig~ggTMarEaAlLGtpaIs~~pGkll-~vdk~lie~---G 293 (346)
T COG1817 223 REKEQA----EIFEGYRNII-IPKKAVDTLSLLYYATLVIGAGGTMAREAALLGTPAISCYPGKLL-AVDKYLIEK---G 293 (346)
T ss_pred CCHHHH----HHHHHHCCCC-CCCCCCCHHHHHHHHHEEECCCCHHHHHHHHHCCCEEEECCCCCC-CCCHHHHHC---C
T ss_conf 755689----9874101105-885552278788654156417703788888728834785388533-223898866---8
Q ss_pred EEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHH
Q ss_conf 302440784261242054898999999999844989
Q gi|254780767|r 313 LPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTL 348 (383)
Q Consensus 313 LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~ 348 (383)
T Consensus 294 -------------~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 294 -------------LLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred -------------CEEECCCHHHHHHHHHHHHHCHH
T ss_conf -------------43431788899999999842500