HHsearch alignment for GI: 254780767 and conserved domain: COG4370
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=99.73 E-value=2.4e-16 Score=127.78 Aligned_cols=345 Identities=17% Similarity=0.171 Sum_probs=197.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEE----EC-CHHHHHCCCEEEECHHHCCEEEHH-----H----HH-
Q ss_conf 745999976821478999999999973899839999----71-789994788065044453110136-----7----46-
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVG----VG-GPSLQKEGLVSLFDFSELSVIGIM-----Q----VV- 67 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~g----iG-G~~m~~~G~~~~~~~~~l~v~G~~-----e----vl- 67 (383)
T Consensus 6 ~~kiLllSNGHgEDlia~~i~qal~rra~p~-eila~LPLVGeG~aYq~l~i~ligpv~~mPSGGf~y~~~~~l~rDvrg 84 (412)
T COG4370 6 APKILLLSNGHGEDLIAVAIAQALRRRAPPD-EILAALPLVGEGGAYQNLNIELIGPVLTMPSGGFIYMDLRNLWRDVRG 84 (412)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHCCCC-CEEECCCCCCCCHHHCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 3104786068527789999999999637986-604216422574121256850000354478888234559999999752
Q ss_pred ----HHHHHHHHHHHHHHHHCCC--CCCCEEEEECHHHHHHHHHHHH-HHH-CCCC---CCEEEECCCCCCCCCCCHH--
Q ss_conf ----6459999999999861001--2888689851177657999986-630-1346---3111100221100366355--
Q gi|254780767|r 68 ----RHLPQFIFRINQTVELIVS--SKPDVLLIVDNPDFTHRVAKRV-RKK-MPNL---PIINYVCPSVWAWREGRAR-- 134 (383)
Q Consensus 68 ----~~~~~~~~~~~~~~~~i~~--~~Pd~vi~iD~pgFnl~lak~l-kk~-~~~i---pvi~yv~PqvWAWr~~R~k-- 134 (383)
T Consensus 85 GLvqlT~~Qi~alrkq~~q-~~~~g~~~~ilAvGdi----vpla~a~lg~~~y~~v~~a~seyyvr~~~g~~l~~t~a~r 159 (412)
T COG4370 85 GLVQLTLGQILALRKQGPQ-LERVGVVGDILAVGDI----VPLAFAILGGLAYAFVGTAKSEYYVRVEYGLGLPLTGALR 159 (412)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEECCH----HHHHHHHHCCCCCCCEEECCCCEEEEECCCCCCCCCHHHH
T ss_conf 1788529999999874316-5533555535885112----5889986167764303321440566201234776400445
Q ss_pred ------------HHHHHHHHHCCCCC---CCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEE
Q ss_conf ------------79999986401567---742232002553147638821122100135588897618765565059985
Q gi|254780767|r 135 ------------KMCAYINQVISILP---FEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLP 199 (383)
Q Consensus 135 ------------~~~~~~d~~~~ifp---FE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llP 199 (383)
T Consensus 160 wen~lg~~y~pwwlm~-~rrc~~vf~rD~~Taq~L~~r-gvna~~vGnpmmD~L~p~~~~~q~-----l~~g~~viaLLP 232 (412)
T COG4370 160 WENALGAVYMPWWLML-RRRCWAVFPRDALTAQHLANR-GVNAAYVGNPMMDGLPPPERDPQL-----LLTGVPVIALLP 232 (412)
T ss_pred HHHHCCCCHHHHHHHH-CCCCEEEECCCCCCHHHHHHC-CCCHHHCCCHHHCCCCCCCCCCHH-----HCCCCCEEEECC
T ss_conf 5430254010589871-552025505553157889746-976665067143069976678134-----226872588668
Q ss_pred CCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHH-HH--HHHC--------CCCCEEEEECCCCHHHHHHH
Q ss_conf 3874301230511189998764027351262016633688999-99--9604--------88850552055203578876
Q gi|254780767|r 200 GSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVR-CI--VSKW--------DISPEIIIDKEQKKQVFMTC 268 (383)
Q Consensus 200 GSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~-~~--~~~~--------~~~~~i~~~~~~~~~~l~~s 268 (383)
T Consensus 233 GsR~pea~~nl~~il~slcal~~~~a~vvfw~ai~~~lpl~~l~~l~e~~gWq~~ad~~~kdnc~l~lsqqsfadiLH~a 312 (412)
T COG4370 233 GSRVPEAQTNLAVILGSLCALPAMFALVVFWAAIAPELPLLLLWTLEERQGWQPLADRFGKDNCSLWLSQQSFADILHAA 312 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHH
T ss_conf 98881787639999999864277778889876037679878999999853862256664667638997588899999889
Q ss_pred HHHHCCCHHHHHHHHHHCCCEEEECCCCCC-EEEEE----ECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHH
Q ss_conf 355233115668887627530254057741-00001----0246761023024407842612420548989999999998
Q gi|254780767|r 269 NAAMAASGTVILELALCGIPVVSIYKSEWI-VNFFI----FYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERL 343 (383)
Q Consensus 269 d~ai~~SGTaTLE~al~g~P~IV~Yk~~~l-t~~i~----~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~l 343 (383)
T Consensus 313 daalgmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~---slt--lv~---------~--~aq~a~~~~q~l 376 (412)
T COG4370 313 DAALGMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGA---SLT--LVR---------P--EAQAAAQAVQEL 376 (412)
T ss_pred HHHHHHCCCHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHCC---EEE--ECC---------C--CHHHHHHHHHHH
T ss_conf 999875441677763369862436898987581799999998525---345--417---------7--545689999998
Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 4498999999999999999838999989999999998
Q gi|254780767|r 344 SQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQ 380 (383)
Q Consensus 344 l~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~ 380 (383)
T Consensus 377 l~dp~r~~air~---nGqrRiGqaGaa~rIAe-~l~e 409 (412)
T COG4370 377 LGDPQRLTAIRH---NGQRRIGQAGAARRIAE-ELGE 409 (412)
T ss_pred HCCHHHHHHHHH---CCHHHCCCCCHHHHHHH-HHHH
T ss_conf 448177788875---34433167623789999-9987