HHsearch alignment for GI: 254780767 and conserved domain: PRK11337

>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional.

Probab=90.40  E-value=0.68  Score=25.86  Aligned_cols=44  Identities=14%  Similarity=0.126  Sum_probs=32.6

Q ss_pred             EEEECHHHCCEEEHHHHH-HHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             065044453110136746-645999999999986100128886898
Q gi|254780767|r   50 VSLFDFSELSVIGIMQVV-RHLPQFIFRINQTVELIVSSKPDVLLI   94 (383)
Q Consensus        50 ~~~~~~~~l~v~G~~evl-~~~~~~~~~~~~~~~~i~~~~Pd~vi~   94 (383)
T Consensus         3 ~~~~~~~~~~~~~l~~~Ir~~~~~Lt~sEk~IA~yIL~~-~~~v~~   47 (293)
T PRK11337          3 QSEFDSALPNGIGLAPYIRMKQEGMTENESRVVDWLLKP-GNLSCA   47 (293)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCC-HHHHHH
T ss_conf             200576699877899999997764499999999999829-899976