HHsearch alignment for GI: 254780767 and conserved domain: TIGR00215
>TIGR00215 lpxB lipid-A-disaccharide synthase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process.
Probab=100.00 E-value=0 Score=390.71 Aligned_cols=375 Identities=31% Similarity=0.494 Sum_probs=341.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74599997682147899999999997389983999971789994788065044453110136746645999999999986
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~g~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 84 (393)
T TIGR00215 6 PLTIALVAGELSGDLLGGGLRRQLPEHY-PNARFVGLGGPRLAAEGCELLYDPEELGVLGLTEVLGRLGPLLKIRKELVQ 84 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0123221200001467889988645321-220100023313454124555203566554378888777888888889998
Q ss_pred HCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CCCHHHHHHHHHHHCCCCCCCHHHHHCCCCC
Q ss_conf 10012888689851177657999986630134631111002211003--6635579999986401567742232002553
Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWR--EGRARKMCAYINQVISILPFEKEVMQRLGGP 160 (383)
Q Consensus 83 ~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr--~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~ 160 (383)
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~w~w~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~ 163 (393)
T TIGR00215 85 LLKQAPPDLLVGIDAPDFNLTLANELKKKDPGLKTLYYVSPSVWAWRPTKWRAKKLGKATDLLLAFLPFEKGFYDKK-GL 163 (393)
T ss_pred HHHHCCCEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-CC
T ss_conf 75304630255403467650123232200477514444333001025026788888887767765401034454420-67
Q ss_pred CEEECCCCCCCCCCCC-CCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHH
Q ss_conf 1476388211221001-355888976187655650599853874301230511189998764027351262016633688
Q gi|254780767|r 161 PTTFVGHPLSSSPSIL-EVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQEN 239 (383)
Q Consensus 161 ~~~fVGHPl~d~~~~~-~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~ 239 (383)
T Consensus 164 ~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
T TIGR00215 164 PCRFVGHPLLDAIPLEKPDRGSAREKLGIDHNGETLALLPGSRGSELEYLLPLFLKAAQLLEEQLPDLKLLLPLPNKKRG 243 (393)
T ss_pred CEEECCCHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH
T ss_conf 50220422454432103312334565168866636888306412578887688766888876414752122220001221
Q ss_pred -HHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEE-ECCCCC--CEEEE
Q ss_conf -999999604888505520552035-7887635523311566888762753025405774100001-024676--10230
Q gi|254780767|r 240 -LVRCIVSKWDISPEIIIDKEQKKQ-VFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFFI-FYIKTW--TCALP 314 (383)
Q Consensus 240 -~~~~~~~~~~~~~~i~~~~~~~~~-~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~-~lik~~--~i~Lp 314 (383)
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 323 (393)
T TIGR00215 244 LQFERLKAEFGPDLTLHLLDGDARLTALVAADLALLASGTAALEAALLGTPFVLGYRVKPLTFLLARRLVKLDLPYVSLP 323 (393)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 35788888634663135422420234565543455421224566766337411010111578999888875226633213
Q ss_pred HHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 244078426124205489899999999984498----999999999999999838999989999999998
Q gi|254780767|r 315 NLIVDYPLVPEYFNSMIRSEALVRWIERLSQDT----LQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQ 380 (383)
Q Consensus 315 Nii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~----~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~ 380 (383)
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 392 (393)
T TIGR00215 324 NLLANRGLVPELLQEECTPEPLAEALLLLLLNGLKAYKESHKLAQDFEELRERLGCPGDCERA-AQAVLE 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHC
T ss_conf 566532200123211223567888878876312556667788888888898875056303567-777632