HHsearch alignment for GI: 254780767 and conserved domain: TIGR03492
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=100.00 E-value=0 Score=338.83 Aligned_cols=339 Identities=20% Similarity=0.216 Sum_probs=258.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHCCCEEEECHHHCCEEEHH---------HHHHHHHHH
Q ss_conf 999768214789999999999738998399997----1789994788065044453110136---------746645999
Q gi|254780767|r 7 AVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV----GGPSLQKEGLVSLFDFSELSVIGIM---------QVVRHLPQF 73 (383)
Q Consensus 7 ~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi----GG~~m~~~G~~~~~~~~~l~v~G~~---------evl~~~~~~ 73 (383)
T Consensus 2 ~lSNGhGE-Dl~a~~i~~~L~~~-~p~~~v~alPLVG~G~ay~~~gi~iig~~~~lpSGGf~~~~~~~l~~Dl~~Gl~~~ 79 (396)
T TIGR03492 2 FLSNGHGE-DLIAARIAKALLQL-SPDLNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGL 79 (396)
T ss_pred CCCCCCHH-HHHHHHHHHHHHHH-CCCCCEEEECCCCCCHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 40676358-89999999999962-99996698513478499997899487466435774622436778999997036999
Q ss_pred -HHHHHHHHHHCCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCEEEECC---CCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf -9999999861001288868985-1177657999986630134631111002---2110036635579999986401567
Q gi|254780767|r 74 -IFRINQTVELIVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPIINYVCP---SVWAWREGRARKMCAYINQVISILP 148 (383)
Q Consensus 74 -~~~~~~~~~~i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi~yv~P---qvWAWr~~R~k~~~~~~d~~~~ifp 148 (383)
T Consensus 80 ~~~q~~~~~~~--~~~~~~ilavGD~--~pl~~A~~s-----g~p~~~~~~~~S~yy~~~~~~~~~~~~~~~~~g~~~~P 150 (396)
T TIGR03492 80 TLGQWRALRKW--AKKGDLIVAVGDI--VPLLFAWLS-----GKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLP 150 (396)
T ss_pred HHHHHHHHHHH--CCCCCEEEEECCH--HHHHHHHHC-----CCCCEEEEECCCCEEEECCCCCCCHHHHHCCCEEECCH
T ss_conf 99999999985--4458879996671--888999981-----89816997045323660687753012332155178167
Q ss_pred CCHH-------------------HHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHH
Q ss_conf 7422-------------------320025531476388211221001355888976187655650599853874301230
Q gi|254780767|r 149 FEKE-------------------VMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKI 209 (383)
Q Consensus 149 FE~~-------------------~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~ 209 (383)
T Consensus 151 we~~lm~~~rc~~Vf~RD~lTA~~L~~-~gi~a~f~GnPmMD~l~~~~-------~~~~~~~~~~I~LLPGSR~pEa~~n 222 (396)
T TIGR03492 151 WERWLMRSRRCLAVFVRDRLTARDLRR-QGVRASYLGNPMMDGLEPPE-------RKPLLTGRFRIALLPGSRPPEAYRN 222 (396)
T ss_pred HHHHHHCCCCCCEEECCCHHHHHHHHH-CCCCEEEECCCHHCCCCCCC-------CCCCCCCCCEEEEECCCCHHHHHHH
T ss_conf 799974096652995055887999997-79964960873413788888-------7667887867999589885999987
Q ss_pred CCCHHHHHHHHHHCCCCCEEEECCCCCH-HHHHHHHHHHCC----------------CCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 5111899987640273512620166336-889999996048----------------88505520552035788763552
Q gi|254780767|r 210 LPFFESAVASLVKRNPFFRFSLVTVSSQ-ENLVRCIVSKWD----------------ISPEIIIDKEQKKQVFMTCNAAM 272 (383)
Q Consensus 210 lP~~l~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~l~~sd~ai 272 (383)
T Consensus 223 l~~~L~a~~~l~~~~~-~~f~~alap~l~~~~l~~~l~~~Gw~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~l~~adl~i 301 (396)
T TIGR03492 223 LKLLLRALEALPDSQP-FVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGI 301 (396)
T ss_pred HHHHHHHHHHHCCCCC-EEEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCHHEECCCEEEEEECCCHHHHHHHCHHHH
T ss_conf 9999999996341488-699998689999899999999659700578654200010487689997384899998551144
Q ss_pred CCCHHHHHHHHHHCCCEEEECCCCC-CEEEEEE-CCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHH
Q ss_conf 3311566888762753025405774-1000010-2467610230244078426124205489899999999984498999
Q gi|254780767|r 273 AASGTVILELALCGIPVVSIYKSEW-IVNFFIF-YIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQR 350 (383)
Q Consensus 273 ~~SGTaTLE~al~g~P~IV~Yk~~~-lt~~i~~-lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r 350 (383)
T Consensus 302 a~AGTAteQ~vgLG~Pvv~l~g~GPQfT~~fA~~Q~R---------LLG~sv~~----~~~~p~~ia~~~~~lL~d~~~~ 368 (396)
T TIGR03492 302 AMAGTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSR---------LLGGSVFL----ASKNPEQAAQVVRQLLADPELL 368 (396)
T ss_pred HCCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH---------HCCCEEEE----CCCCHHHHHHHHHHHHCCHHHH
T ss_conf 4377099999871898799727872777999999998---------62753352----6899999999999985499999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 99999999999983899998999999999861
Q gi|254780767|r 351 RAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383)
Q Consensus 351 ~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383)
T Consensus 369 ~~~~---~~gr~RlG~~Gas-~RiA~~il~~L 396 (396)
T TIGR03492 369 ERCR---RNGQERMGPPGAS-ARIAESILKQL 396 (396)
T ss_pred HHHH---HHHHHHCCCCCHH-HHHHHHHHHHC
T ss_conf 9999---9999855886588-99999999519