HHsearch alignment for GI: 254780767 and conserved domain: pfam01075
>pfam01075 Glyco_transf_9 Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
Probab=97.72 E-value=0.00051 Score=46.49 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=65.4
Q ss_pred CCCCCEEEEEECCCCCCHHHHCC--CHHHHHHHHHHCCCCCEEEECCCCCH-HHHH-HHHHHHCCCCCEEEE---ECCCC
Q ss_conf 65565059985387430123051--11899987640273512620166336-8899-999960488850552---05520
Q gi|254780767|r 189 PSQWKKILLLPGSRAQEIYKILP--FFESAVASLVKRNPFFRFSLVTVSSQ-ENLV-RCIVSKWDISPEIII---DKEQK 261 (383)
Q Consensus 189 ~~~~~~I~llPGSR~~EI~~~lP--~~l~~~~~l~~~~~~~~~~i~~~~~~-~~~~-~~~~~~~~~~~~i~~---~~~~~ 261 (383)
T Consensus 104 ~~~~~~i~i~pga~~~--~K~Wp~e~f~~L~~~l~~~~--~~vvl~gg~~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el 179 (249)
T pfam01075 104 NGGRPYIAFCPGASRP--AKRWPAEHFAELAQALQERG--WQVVLFGGAEDREEEIAKRLAAGLRTPCVNLLGKTSLEQA 179 (249)
T ss_pred CCCCCEEEEECCCCCC--CCCCCHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 2599989997387885--67799999999999999669--9569973867899999999986389986862699999999
Q ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHCCCEEEECCCC
Q ss_conf 3578876355233-1156688876275302540577
Q gi|254780767|r 262 KQVFMTCNAAMAA-SGTVILELALCGIPVVSIYKSE 296 (383)
Q Consensus 262 ~~~l~~sd~ai~~-SGTaTLE~al~g~P~IV~Yk~~ 296 (383)
T Consensus 180 ~ali~~a~l~I~nDSGp~H-iAaA~g~Pti~ifGpT 214 (249)
T pfam01075 180 AALLAGADLVVGNDSGLMH-LAAALDRPVIGLYGPT 214 (249)
T ss_pred HHHHHHCCEEEECCCHHHH-HHHHCCCCEEEEECCC
T ss_conf 9999850668857985999-9998399889997889