HHsearch alignment for GI: 254780767 and conserved domain: pfam02684
>pfam02684 LpxB Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyse the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <= UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyse the fist disaccharide step in the synthesis of lipid-A-disaccharide.
Probab=100.00 E-value=0 Score=852.94 Aligned_cols=369 Identities=31% Similarity=0.512 Sum_probs=344.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99997682147899999999997389983999971789994788065044453110136746645999999999986100
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIV 85 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~ 85 (383)
T Consensus 1 Ifi~aGE~SGD~~ga~Li~~Lk~~-~p~i~~~GvGG~~M~~~G~~~l~d~~~lsvmG~~evl~~l~~l~~~~~~~~~~i~ 79 (373)
T pfam02684 1 IFLSAGEASGDILGGELIQNLKEH-YPNLRFIGVGGPKMEAEGFESLANMEEISVMGFIEVLGRLFKLLKIYQKVVKNIL 79 (373)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHC-CCCCEEEEECCHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 989935851899999999999830-9894899988089997799534772784140199999899999999999999874
Q ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf 12888689851177657999986630134631111002211003663557999998640156774223200255314763
Q gi|254780767|r 86 SSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFV 165 (383)
Q Consensus 86 ~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fV 165 (383)
T Consensus 80 ~~~PD~vIlID~pgFNlrlak~lkk~g~~ipvi~yV~PqvWAWr~~R~k~i~~~~D~ll~IfPFE~~~y~~~-gv~~~fV 158 (373)
T pfam02684 80 KKKPDTLILIDAPDFNLRLAKKLRKLGPKLKIIHYVSPSVWAWRPKRAKIIAKYTDLLLAILPFEKGFFQKF-GLDCRYV 158 (373)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHH-CCCEEEC
T ss_conf 269988999717615599999999719998789996884221271589999999987312898878999860-9971575
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCH-HHHHHHH
Q ss_conf 882112210013558889761876556505998538743012305111899987640273512620166336-8899999
Q gi|254780767|r 166 GHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQ-ENLVRCI 244 (383)
Q Consensus 166 GHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~~ 244 (383)
T Consensus 159 GHPl~d~~~~~~~~~~~~~-~~~~~~~~~i~lLPGSR~~EI~~~lPi~l~aa~~l~~~~~~~~~~ip~~~~~~~~~~~~~ 237 (373)
T pfam02684 159 GHPLLDEIKLYKKRASAKE-LLIDHDEPILALLPGSRKGEIRRLLPPIQVAAQQLSSQFPNLKLLVPLVNKKYEEQIEDT 237 (373)
T ss_pred CCCHHHHHCCCCCHHHHHH-HCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 9811654013776589997-468987755776788869999999999999999999768991899965887899999999
Q ss_pred HHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEE-EECCCCCCEEEEHHHCCCCCC
Q ss_conf 9604888505520552035788763552331156688876275302540577410000-102467610230244078426
Q gi|254780767|r 245 VSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFF-IFYIKTWTCALPNLIVDYPLV 323 (383)
Q Consensus 245 ~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i-~~lik~~~i~LpNii~~~~iv 323 (383)
T Consensus 238 ~~~~~~~~~i~~~~~~~~~~~~~sd~al~~SGTaTLE~al~~~P~vV~Yk~~~lty~i~k~lvkv~~isL~Nii~~k~iv 317 (373)
T pfam02684 238 LALENCDVSLLEISGERYEAMFAADAALAKSGTATLEAALAGTPMVVAYRVKPLTFFLAKRLVKIDYISLPNIILNREIV 317 (373)
T ss_pred HHHCCCCCCEEECCCCHHHHHHHCCEEEECCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEHHHHHCCCCCC
T ss_conf 98649998789805724999984865012167699999981999899995778999999999838954434886699867
Q ss_pred CHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHH
Q ss_conf 12420548989999999998449899999999999999983899-9989999999
Q gi|254780767|r 324 PEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTK-KPAGHMAAEI 377 (383)
Q Consensus 324 PEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~-~~a~~~AA~~ 377 (383)
T Consensus 318 PEllQ~~~t~~~ia~~~~~lL~d~~~~~~~~~~~~~~~~~l~~g~~~~~~~aa~~ 372 (373)
T pfam02684 318 PEFIQGECDAHLEAIALLLLLLNGLKAKKQKDRCRKFKQLLRFGQCNSDEQAALI 372 (373)
T ss_pred HHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 3564751789999999999967999999999999999999856899988977753