Query gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 383 No_of_seqs 189 out of 1971 Neff 6.9 Searched_HMMs 23785 Date Mon May 30 13:25:56 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780767.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1f0k_A MURG, UDP-N-acetylgluco 99.8 8.1E-18 3.4E-22 136.1 22.7 339 1-382 2-354 (364) 2 1v4v_A UDP-N-acetylglucosamine 99.7 8.6E-16 3.6E-20 122.7 19.1 340 3-383 4-366 (376) 3 3ia7_A CALG4; glycosysltransfe 99.7 4.1E-14 1.7E-18 111.6 25.1 344 1-383 2-398 (402) 4 2jjm_A Glycosyl transferase, g 99.7 1.3E-13 5.6E-18 108.3 22.0 337 3-366 15-371 (394) 5 3iaa_A CALG2; glycosyltransfer 99.6 1.6E-12 6.9E-17 101.1 25.9 340 3-382 19-412 (416) 6 1vgv_A UDP-N-acetylglucosamine 99.6 5.5E-13 2.3E-17 104.2 20.3 337 4-380 1-371 (384) 7 2gek_A Phosphatidylinositol ma 99.6 3.7E-14 1.5E-18 112.0 12.6 328 2-365 19-368 (406) 8 2iya_A OLEI, oleandomycin glyc 99.6 1.1E-11 4.6E-16 95.6 25.0 343 1-382 10-420 (424) 9 3beo_A UDP-N-acetylglucosamine 99.6 5.4E-13 2.3E-17 104.3 16.7 342 1-382 6-373 (375) 10 3ot5_A UDP-N-acetylglucosamine 99.5 1.1E-12 4.5E-17 102.3 18.1 342 1-382 25-392 (403) 11 3c48_A Predicted glycosyltrans 99.5 2.1E-11 8.8E-16 93.8 20.9 337 2-365 19-410 (438) 12 2x6q_A Trehalose-synthase TRET 99.5 4.4E-11 1.8E-15 91.7 21.2 339 1-383 38-416 (416) 13 2iyf_A OLED, oleandomycin glyc 99.4 6.9E-10 2.9E-14 83.8 25.1 341 2-382 6-398 (430) 14 3okp_A GDP-mannose-dependent a 99.4 2.7E-11 1.1E-15 93.1 16.3 264 76-365 74-364 (394) 15 1rrv_A Glycosyltransferase GTF 99.4 5.9E-10 2.5E-14 84.2 21.2 340 4-383 1-400 (416) 16 2iw1_A Lipopolysaccharide core 99.3 1.2E-10 5E-15 88.8 16.8 343 4-382 1-372 (374) 17 2qzs_A Glycogen synthase; glyc 99.3 2.8E-09 1.2E-13 79.7 23.1 336 4-352 1-447 (485) 18 3fro_A GLGA glycogen synthase; 99.3 1E-09 4.3E-14 82.6 19.4 335 2-364 1-414 (439) 19 1psw_A ADP-heptose LPS heptosy 99.3 4.7E-11 2E-15 91.5 11.3 323 4-348 1-347 (348) 20 2p6p_A Glycosyl transferase; G 99.3 3.4E-10 1.4E-14 85.8 15.2 335 4-380 1-376 (384) 21 1rzu_A Glycogen synthase 1; gl 99.2 9.5E-09 4E-13 76.2 20.7 164 182-356 280-453 (485) 22 3h4t_A Glycosyltransferase GTF 99.2 1.4E-08 5.7E-13 75.2 21.4 333 4-381 1-380 (404) 23 3dzc_A UDP-N-acetylglucosamine 99.2 5E-08 2.1E-12 71.5 23.8 340 2-379 23-395 (396) 24 1iir_A Glycosyltransferase GTF 99.2 2.6E-08 1.1E-12 73.4 21.4 337 4-381 1-397 (415) 25 3oy2_A Glycosyltransferase B73 99.2 1.9E-10 8.1E-15 87.4 9.8 337 4-360 1-369 (413) 26 3hbm_A UDP-sugar hydrolase; PS 99.1 3.9E-09 1.6E-13 78.8 13.8 243 4-293 1-251 (282) 27 3hbf_A Flavonoid 3-O-glucosylt 98.8 7.2E-06 3E-10 57.2 22.9 354 4-381 14-451 (454) 28 2r60_A Glycosyl transferase, g 98.7 9.1E-06 3.8E-10 56.6 19.4 159 184-365 253-444 (499) 29 2bfw_A GLGA glycogen synthase; 98.7 3.1E-07 1.3E-11 66.3 11.3 181 158-361 4-196 (200) 30 2pq6_A UDP-glucuronosyl/UDP-gl 98.6 6.7E-06 2.8E-10 57.4 17.6 180 185-382 288-478 (482) 31 2gt1_A Lipopolysaccharide hept 98.5 1.2E-06 5.1E-11 62.3 11.1 301 4-347 1-323 (326) 32 2c1x_A UDP-glucose flavonoid 3 98.5 9.5E-05 4E-09 49.9 21.7 177 185-379 264-448 (456) 33 2acv_A Triterpene UDP-glucosyl 98.4 0.00013 5.5E-09 48.9 21.8 355 4-383 10-463 (463) 34 2iuy_A Avigt4, glycosyltransfe 98.2 1.4E-05 5.8E-10 55.4 10.7 243 1-300 1-278 (342) 35 2vsy_A XCC0866; transferase, g 98.1 0.0003 1.3E-08 46.6 15.8 162 183-363 368-539 (568) 36 2x0d_A WSAF; GT4 family, trans 98.1 1.2E-05 5.1E-10 55.8 7.4 306 3-353 46-386 (413) 37 2hy7_A Glucuronosyltransferase 98.0 4.1E-05 1.7E-09 52.3 9.5 215 87-352 123-358 (406) 38 1uqt_A Alpha, alpha-trehalose- 97.9 0.0015 6.4E-08 41.9 19.6 145 193-359 255-433 (482) 39 3l7i_A Teichoic acid biosynthe 97.5 0.00055 2.3E-08 44.8 8.4 222 140-382 479-718 (729) 40 2f9f_A First mannosyl transfer 97.1 0.0013 5.3E-08 42.4 6.7 129 195-349 25-165 (177) 41 2o6l_A UDP-glucuronosyltransfe 96.7 0.013 5.5E-07 35.7 9.3 140 190-353 19-161 (170) 42 2vch_A Hydroquinone glucosyltr 96.7 0.01 4.2E-07 36.5 8.5 110 255-374 343-459 (480) 43 3nb0_A Glycogen [starch] synth 95.5 0.037 1.6E-06 32.8 6.6 100 260-365 511-618 (725) 44 2jzc_A UDP-N-acetylglucosamine 92.6 0.019 8.1E-07 34.6 0.2 36 260-295 124-161 (224) 45 3m2t_A Probable dehydrogenase; 91.7 0.091 3.8E-06 30.2 2.7 93 1-118 3-96 (359) 46 1zh8_A Oxidoreductase; TM0312, 91.5 0.1 4.3E-06 29.8 2.9 94 1-118 16-110 (340) 47 3e18_A Oxidoreductase; dehydro 91.1 0.17 7.1E-06 28.4 3.7 91 1-118 3-93 (359) 48 1f06_A MESO-diaminopimelate D- 90.6 0.69 2.9E-05 24.4 6.4 87 1-119 1-87 (320) 49 2b4a_A BH3024; 10175646, struc 90.0 0.87 3.6E-05 23.7 6.5 80 1-121 13-95 (138) 50 2ixd_A LMBE-related protein; h 88.8 0.3 1.2E-05 26.8 3.3 88 1-99 1-108 (242) 51 2hun_A 336AA long hypothetical 88.7 0.52 2.2E-05 25.2 4.6 36 1-40 1-36 (336) 52 2rng_A BIG defensin; alpha-hel 88.7 0.048 2E-06 32.0 -0.7 16 114-129 3-21 (79) 53 3lp8_A Phosphoribosylamine-gly 88.6 1.2 5.1E-05 22.8 6.7 91 1-118 19-111 (442) 54 1ehi_A LMDDL2, D-alanine:D-lac 87.1 1.4 5.9E-05 22.3 6.0 40 1-40 1-45 (377) 55 1iow_A DD-ligase, DDLB, D-ALA\ 87.0 1.5 6.3E-05 22.2 6.4 77 1-118 1-84 (306) 56 3e9m_A Oxidoreductase, GFO/IDH 87.0 0.4 1.7E-05 25.9 3.1 93 1-118 3-95 (330) 57 3mz0_A Inositol 2-dehydrogenas 86.8 0.28 1.2E-05 27.0 2.2 94 1-118 1-94 (344) 58 3b2n_A Uncharacterized protein 86.7 0.32 1.4E-05 26.5 2.5 81 1-120 1-83 (133) 59 2i87_A D-alanine-D-alanine lig 86.4 0.19 8.2E-06 28.0 1.3 137 1-162 1-144 (364) 60 2p2s_A Putative oxidoreductase 86.2 0.3 1.3E-05 26.7 2.2 93 1-118 2-94 (336) 61 3e5n_A D-alanine-D-alanine lig 85.2 1.8 7.7E-05 21.6 6.5 39 1-40 20-63 (386) 62 1qkk_A DCTD, C4-dicarboxylate 84.3 0.74 3.1E-05 24.2 3.4 40 81-120 40-81 (155) 63 3ec7_A Putative dehydrogenase; 84.3 0.48 2E-05 25.4 2.5 94 3-119 23-116 (357) 64 1tmy_A CHEY protein, TMY; chem 84.3 0.97 4.1E-05 23.4 4.0 38 83-120 42-81 (120) 65 1a2o_A CHEB methylesterase; ba 84.2 2 8.6E-05 21.3 7.8 51 193-248 156-206 (349) 66 1nvm_B Acetaldehyde dehydrogen 83.9 1.6 6.6E-05 22.0 4.9 101 1-120 1-103 (312) 67 3eod_A Protein HNR; response r 83.8 1 4.4E-05 23.2 4.0 40 82-121 45-86 (130) 68 3ezy_A Dehydrogenase; structur 83.8 0.64 2.7E-05 24.6 2.9 91 1-117 1-91 (344) 69 2o4u_X Dimeric dihydrodiol deh 83.8 0.64 2.7E-05 24.6 2.9 94 1-118 1-94 (334) 70 2hi1_A 4-hydroxythreonine-4-ph 83.6 2.2 9.1E-05 21.1 7.0 107 1-109 4-151 (330) 71 3cu5_A Two component transcrip 83.4 0.79 3.3E-05 24.0 3.2 39 82-120 43-83 (141) 72 1jkx_A GART;, phosphoribosylgl 83.1 1.3 5.5E-05 22.5 4.3 98 4-108 1-100 (212) 73 2f48_A Diphosphate--fructose-6 83.0 2.3 9.6E-05 20.9 9.1 115 2-119 71-200 (555) 74 1yio_A Response regulatory pro 82.8 0.84 3.6E-05 23.8 3.2 41 80-120 40-82 (208) 75 3cz5_A Two-component response 82.3 0.97 4.1E-05 23.4 3.4 39 82-120 45-85 (153) 76 2yrx_A Phosphoribosylglycinami 82.3 2.4 0.0001 20.8 6.9 89 2-118 20-111 (451) 77 2gdz_A NAD+-dependent 15-hydro 82.2 2.4 0.0001 20.8 5.5 89 1-94 1-92 (267) 78 1e4e_A Vancomycin/teicoplanin 81.8 0.81 3.4E-05 23.9 2.8 134 1-162 1-147 (343) 79 2xdq_A Light-independent proto 81.7 2.5 0.00011 20.6 9.7 164 72-253 84-295 (460) 80 3hdg_A Uncharacterized protein 81.5 0.75 3.1E-05 24.1 2.5 36 85-120 48-85 (137) 81 3f6c_A Positive transcription 80.7 0.65 2.7E-05 24.5 2.0 37 84-120 42-80 (134) 82 3crn_A Response regulator rece 80.5 1.2 4.9E-05 22.9 3.2 36 85-120 44-81 (132) 83 3nav_A Tryptophan synthase alp 79.8 2.1 8.9E-05 21.2 4.4 124 6-141 24-174 (271) 84 2pl1_A Transcriptional regulat 79.4 1.3 5.7E-05 22.5 3.3 38 85-122 41-80 (121) 85 3cea_A MYO-inositol 2-dehydrog 79.3 3 0.00013 20.1 10.1 95 1-119 6-100 (346) 86 2qv0_A Protein MRKE; structura 79.0 1.2 5E-05 22.8 2.9 38 83-120 50-89 (143) 87 3a10_A Response regulator; pho 78.8 1.4 5.9E-05 22.4 3.2 39 83-121 40-80 (116) 88 1srr_A SPO0F, sporulation resp 78.6 1.2 4.9E-05 22.8 2.8 37 85-121 44-82 (124) 89 1dbw_A Transcriptional regulat 78.6 2 8.2E-05 21.4 3.9 80 1-121 1-82 (126) 90 3bio_A Oxidoreductase, GFO/IDH 77.7 3.4 0.00014 19.8 8.8 87 2-119 8-94 (304) 91 2hig_A 6-phospho-1-fructokinas 77.0 0.71 3E-05 24.3 1.3 116 2-120 96-224 (487) 92 3eq2_A Probable two-component 76.8 1.5 6.4E-05 22.1 2.9 33 86-118 47-81 (394) 93 1tlt_A Putative oxidoreductase 76.7 3.6 0.00015 19.6 5.3 90 1-118 3-93 (319) 94 3i12_A D-alanine-D-alanine lig 76.0 1.6 6.5E-05 22.0 2.8 39 1-40 1-44 (364) 95 3evn_A Oxidoreductase, GFO/IDH 75.5 3.9 0.00016 19.4 7.1 93 1-118 3-95 (329) 96 2rjn_A Response regulator rece 75.5 2.1 9E-05 21.1 3.4 17 327-343 107-123 (154) 97 2pln_A HP1043, response regula 75.1 1.9 8.2E-05 21.4 3.1 34 84-120 58-92 (137) 98 3cfy_A Putative LUXO repressor 74.9 2 8.3E-05 21.4 3.1 35 86-120 46-82 (137) 99 3cwo_X Beta/alpha-barrel prote 74.5 1 4.3E-05 23.3 1.5 41 80-120 17-59 (237) 100 3gdo_A Uncharacterized oxidore 74.5 4.1 0.00017 19.3 6.0 91 1-118 3-93 (358) 101 2q8p_A Iron-regulated surface 74.5 4.1 0.00017 19.3 4.6 44 81-128 53-96 (260) 102 3hv2_A Response regulator/HD d 74.5 1.7 7.2E-05 21.8 2.7 22 325-346 112-133 (153) 103 3e82_A Putative oxidoreductase 74.4 1.7 7E-05 21.8 2.6 90 2-118 6-95 (364) 104 3db2_A Putative NADPH-dependen 74.3 1.8 7.6E-05 21.6 2.8 92 1-118 3-94 (354) 105 3hzh_A Chemotaxis response reg 74.3 1.5 6.3E-05 22.1 2.4 19 326-344 137-155 (157) 106 1qop_A Tryptophan synthase alp 74.2 4.2 0.00018 19.2 4.8 121 7-139 22-169 (268) 107 3eul_A Possible nitrate/nitrit 74.0 1.6 6.5E-05 22.0 2.4 17 329-345 118-134 (152) 108 2qxy_A Response regulator; reg 73.8 3.7 0.00016 19.6 4.3 37 83-120 43-81 (142) 109 3c1a_A Putative oxidoreductase 73.6 1.5 6.1E-05 22.2 2.2 89 2-118 9-97 (315) 110 3da8_A Probable 5'-phosphoribo 72.5 1.5 6.4E-05 22.1 2.0 90 2-108 11-110 (215) 111 1zh2_A KDP operon transcriptio 71.7 2.6 0.00011 20.6 3.1 36 85-121 42-79 (121) 112 2ekc_A AQ_1548, tryptophan syn 71.4 4.8 0.0002 18.8 6.3 119 6-138 21-168 (262) 113 2jba_A Phosphate regulon trans 71.2 3.2 0.00014 20.0 3.5 41 81-121 39-83 (127) 114 1hjr_A Holliday junction resol 70.9 5 0.00021 18.7 5.3 74 71-144 42-129 (158) 115 2qr3_A Two-component system re 70.8 2.7 0.00011 20.4 3.0 36 85-120 44-86 (140) 116 1vim_A Hypothetical protein AF 70.8 2.1 9E-05 21.1 2.5 33 194-234 92-124 (200) 117 1mvo_A PHOP response regulator 70.6 2.9 0.00012 20.3 3.1 36 85-120 44-81 (136) 118 2ayx_A Sensor kinase protein R 70.5 3.3 0.00014 19.9 3.4 23 323-345 224-246 (254) 119 2fb9_A D-alanine:D-alanine lig 70.2 3.1 0.00013 20.0 3.2 124 1-162 1-133 (322) 120 3c3m_A Response regulator rece 70.1 3.2 0.00014 20.0 3.3 82 1-123 1-86 (138) 121 3cnb_A DNA-binding response re 70.0 3.3 0.00014 19.9 3.3 37 84-120 50-90 (143) 122 3gt7_A Sensor protein; structu 70.0 3.5 0.00015 19.7 3.5 43 80-122 43-89 (154) 123 2jk1_A HUPR, hydrogenase trans 69.5 2.3 9.5E-05 21.0 2.4 21 326-346 99-119 (139) 124 2pk3_A GDP-6-deoxy-D-LYXO-4-he 69.5 5.3 0.00022 18.5 4.6 34 2-41 11-44 (321) 125 1geq_A Tryptophan synthase alp 69.3 5.3 0.00022 18.5 5.1 120 6-139 9-155 (248) 126 3eqz_A Response regulator; str 68.2 3.7 0.00016 19.6 3.3 37 84-120 42-80 (135) 127 3a28_C L-2.3-butanediol dehydr 67.9 5.7 0.00024 18.3 5.3 36 1-41 1-36 (258) 128 1mb3_A Cell division response 67.7 3.4 0.00014 19.8 3.0 37 85-121 42-82 (124) 129 1ujp_A Tryptophan synthase alp 67.7 4 0.00017 19.4 3.3 120 6-138 20-165 (271) 130 2qsj_A DNA-binding response re 67.5 4.9 0.00021 18.8 3.7 34 86-119 48-83 (154) 131 2i2w_A Phosphoheptose isomeras 67.5 4.1 0.00017 19.3 3.4 24 194-223 134-157 (212) 132 2dy0_A APRT, adenine phosphori 67.4 5.8 0.00025 18.3 7.1 55 63-120 38-92 (190) 133 2yw2_A Phosphoribosylamine--gl 67.2 5.9 0.00025 18.2 7.6 88 4-118 1-90 (424) 134 2vqe_B 30S ribosomal protein S 66.6 6 0.00025 18.2 4.9 19 278-296 173-191 (256) 135 3cvj_A Putative phosphoheptose 66.6 6 0.00025 18.2 7.2 101 16-122 28-143 (243) 136 2x7j_A 2-succinyl-5-enolpyruvy 66.0 6.2 0.00026 18.1 5.2 34 86-122 92-128 (604) 137 3mjf_A Phosphoribosylamine--gl 65.6 6.3 0.00027 18.0 8.2 92 2-118 2-95 (431) 138 2vvp_A Ribose-5-phosphate isom 65.6 6.3 0.00027 18.0 4.3 36 1-40 1-36 (162) 139 1sbz_A Probable aromatic acid 65.5 6.3 0.00027 18.0 4.5 36 4-41 1-36 (197) 140 1obb_A Maltase, alpha-glucosid 65.2 6.4 0.00027 18.0 7.2 116 1-124 1-176 (480) 141 2bw0_A 10-FTHFDH, 10-formyltet 64.8 6.5 0.00027 17.9 5.1 80 1-100 20-111 (329) 142 2qzj_A Two-component response 64.3 5 0.00021 18.7 3.3 37 84-121 44-82 (136) 143 3kcn_A Adenylate cyclase homol 64.3 4.7 0.0002 18.9 3.2 23 97-119 58-81 (151) 144 1yo6_A Putative carbonyl reduc 64.0 6.8 0.00028 17.8 5.8 36 1-40 1-36 (250) 145 1xhf_A DYE resistance, aerobic 63.8 4.7 0.0002 18.9 3.1 36 85-121 44-81 (123) 146 3ff4_A Uncharacterized protein 63.8 4 0.00017 19.3 2.7 86 2-120 2-88 (122) 147 1dc7_A NTRC, nitrogen regulati 63.7 3 0.00012 20.2 2.0 39 82-120 41-81 (124) 148 1a04_A Nitrate/nitrite respons 63.2 5 0.00021 18.7 3.1 35 85-119 48-84 (215) 149 3grc_A Sensor protein, kinase; 63.1 4.4 0.00018 19.1 2.8 33 87-119 49-85 (140) 150 3kht_A Response regulator; PSI 63.1 6.3 0.00027 18.0 3.6 36 85-120 48-87 (144) 151 2ew2_A 2-dehydropantoate 2-red 62.8 5.7 0.00024 18.3 3.4 48 2-54 2-52 (316) 152 1n2z_A Vitamin B12 transport p 61.3 7.6 0.00032 17.5 5.3 61 81-152 50-110 (245) 153 1dz3_A Stage 0 sporulation pro 61.1 5.5 0.00023 18.4 3.0 32 85-116 45-78 (130) 154 1w25_A Stalked-cell differenti 61.0 5.7 0.00024 18.3 3.1 35 85-120 42-81 (459) 155 2vpt_A Lipolytic enzyme; ester 61.0 7.6 0.00032 17.5 7.0 79 3-95 5-90 (215) 156 3fhl_A Putative oxidoreductase 60.8 3.4 0.00014 19.8 1.9 90 1-118 3-93 (362) 157 1vl0_A DTDP-4-dehydrorhamnose 60.8 7.7 0.00032 17.5 4.9 33 2-40 11-43 (292) 158 3nhm_A Response regulator; pro 60.7 5 0.00021 18.7 2.7 34 86-119 45-82 (133) 159 3f6p_A Transcriptional regulat 60.5 7.8 0.00033 17.4 3.9 78 1-121 1-80 (120) 160 3moi_A Probable dehydrogenase; 59.7 7.4 0.00031 17.6 3.5 91 1-117 1-91 (387) 161 3gl9_A Response regulator; bet 59.7 7.4 0.00031 17.6 3.5 40 82-121 40-83 (122) 162 1kgs_A DRRD, DNA binding respo 59.4 7.2 0.0003 17.7 3.4 81 1-123 1-83 (225) 163 1ny5_A Transcriptional regulat 59.2 5.7 0.00024 18.3 2.8 38 83-120 39-78 (387) 164 2wi8_A Iron-uptake system-bind 59.1 7.1 0.0003 17.7 3.3 36 81-120 89-124 (311) 165 3cg4_A Response regulator rece 58.9 5.5 0.00023 18.4 2.7 20 326-345 107-126 (142) 166 2l2q_A PTS system, cellobiose- 58.7 8.4 0.00035 17.2 4.9 44 2-46 3-47 (109) 167 2a9o_A Response regulator; ess 58.2 6.5 0.00027 17.9 3.0 36 85-121 42-79 (120) 168 1s8n_A Putative antiterminator 57.7 6.7 0.00028 17.8 3.0 39 81-120 51-91 (205) 169 3cg0_A Response regulator rece 57.5 6.7 0.00028 17.8 3.0 32 87-119 53-87 (140) 170 2ywr_A Phosphoribosylglycinami 56.9 4.3 0.00018 19.1 1.9 79 4-98 2-90 (216) 171 3etn_A Putative phosphosugar i 56.6 9.1 0.00038 17.0 5.3 134 52-234 9-143 (220) 172 3hn2_A 2-dehydropantoate 2-red 56.4 9.1 0.00038 17.0 4.0 47 1-53 1-48 (312) 173 3k8x_A Acetyl-COA carboxylase; 56.3 8.8 0.00037 17.1 3.4 39 5-44 106-154 (758) 174 2zay_A Response regulator rece 56.2 7.5 0.00032 17.5 3.0 35 86-120 50-88 (147) 175 3euw_A MYO-inositol dehydrogen 55.7 9.3 0.00039 16.9 9.9 90 3-118 4-93 (344) 176 1meo_A Phosophoribosylglycinam 55.6 4.2 0.00018 19.2 1.7 97 5-108 2-100 (209) 177 3kux_A Putative oxidoreductase 55.5 4.1 0.00017 19.3 1.6 89 2-118 6-95 (352) 178 3lou_A Formyltetrahydrofolate 55.0 3.4 0.00014 19.8 1.1 17 327-343 248-264 (292) 179 1ydw_A AX110P-like protein; st 54.9 9.6 0.0004 16.8 8.5 96 2-119 5-100 (362) 180 3n0v_A Formyltetrahydrofolate 54.3 6 0.00025 18.2 2.3 56 95-150 16-81 (286) 181 3c3w_A Two component transcrip 53.3 8.5 0.00036 17.2 2.9 41 82-122 41-83 (225) 182 2q8u_A Exonuclease, putative; 53.0 10 0.00043 16.6 4.8 49 71-119 44-101 (336) 183 3dzd_A Transcriptional regulat 52.8 6 0.00025 18.2 2.1 39 82-120 38-78 (368) 184 3i42_A Response regulator rece 52.6 8.3 0.00035 17.3 2.8 108 1-154 1-112 (127) 185 1m3s_A Hypothetical protein YC 52.3 6.5 0.00027 17.9 2.2 46 90-145 81-129 (186) 186 2z2v_A Hypothetical protein PH 51.9 11 0.00045 16.5 8.6 91 2-118 15-105 (365) 187 3kcq_A Phosphoribosylglycinami 51.6 2.5 0.0001 20.7 -0.0 86 1-98 6-92 (215) 188 3lwb_A D-alanine--D-alanine li 51.5 9.4 0.00039 16.9 2.9 39 1-40 8-51 (373) 189 1jeo_A MJ1247, hypothetical pr 51.5 8.1 0.00034 17.3 2.6 21 211-233 96-116 (180) 190 3m6m_D Sensory/regulatory prot 51.5 9.1 0.00038 17.0 2.8 24 87-110 57-82 (143) 191 1vdm_A Purine phosphoribosyltr 51.2 11 0.00046 16.4 5.0 39 70-110 8-46 (153) 192 1jbe_A Chemotaxis protein CHEY 51.0 9.2 0.00039 16.9 2.8 37 84-120 45-85 (128) 193 2glx_A 1,5-anhydro-D-fructose 50.7 8.1 0.00034 17.3 2.5 89 5-118 2-90 (332) 194 2r79_A Periplasmic binding pro 50.7 8.7 0.00037 17.1 2.6 45 81-128 52-97 (283) 195 3k3p_A D-alanine--D-alanine li 50.6 11 0.00047 16.4 4.7 39 1-40 35-78 (383) 196 3k7p_A Ribose 5-phosphate isom 50.5 11 0.00047 16.4 3.6 10 281-290 96-105 (179) 197 1oaa_A Sepiapterin reductase; 50.0 11 0.00048 16.3 5.7 34 5-40 7-40 (259) 198 3n0r_A Response regulator; sig 49.8 5.3 0.00022 18.5 1.4 94 251-345 160-276 (286) 199 2j48_A Two-component sensor ki 49.7 12 0.00049 16.3 3.5 40 83-122 40-83 (119) 200 2fsv_C NAD(P) transhydrogenase 49.7 12 0.00049 16.3 5.6 130 191-327 45-188 (203) 201 2rdm_A Response regulator rece 49.6 12 0.00049 16.3 3.4 35 87-121 49-86 (132) 202 2i2x_B MTAC, methyltransferase 49.6 12 0.00049 16.3 5.1 29 207-235 185-213 (258) 203 1p6q_A CHEY2; chemotaxis, sign 49.5 9.5 0.0004 16.9 2.7 36 85-120 48-87 (129) 204 1q0q_A 1-deoxy-D-xylulose 5-ph 49.4 12 0.00049 16.3 5.1 28 318-345 346-373 (406) 205 3a06_A 1-deoxy-D-xylulose 5-ph 49.3 12 0.00049 16.2 6.5 29 318-346 312-340 (376) 206 3kto_A Response regulator rece 48.9 11 0.00046 16.4 2.9 36 84-119 46-85 (136) 207 1xg5_A ARPG836; short chain de 48.6 12 0.00051 16.2 4.9 23 5-29 33-55 (279) 208 1ys7_A Transcriptional regulat 48.0 11 0.00047 16.4 2.8 79 1-120 5-85 (233) 209 1e2b_A Enzyme IIB-cellobiose; 47.9 12 0.00052 16.1 5.6 89 1-132 1-90 (106) 210 3ioy_A Short-chain dehydrogena 47.7 12 0.00052 16.1 4.5 39 5-46 9-47 (319) 211 2ip4_A PURD, phosphoribosylami 47.5 13 0.00053 16.1 7.6 87 4-118 1-89 (417) 212 3c8e_A YGHU, glutathione S-tra 47.5 4.2 0.00018 19.2 0.6 20 118-137 4-23 (288) 213 2gkg_A Response regulator homo 47.3 13 0.00053 16.0 3.9 38 84-121 45-87 (127) 214 1l1q_A Adenine phosphoribosylt 47.1 13 0.00053 16.0 6.6 54 64-120 29-82 (186) 215 3ius_A Uncharacterized conserv 46.3 13 0.00055 16.0 4.4 33 1-41 4-36 (286) 216 2cfc_A 2-(R)-hydroxypropyl-COM 45.9 13 0.00056 15.9 6.2 39 1-44 1-39 (250) 217 3nrb_A Formyltetrahydrofolate 45.8 8.3 0.00035 17.2 1.9 36 86-121 86-122 (287) 218 1hyh_A L-hicdh, L-2-hydroxyiso 45.7 13 0.00056 15.9 5.8 25 310-335 263-287 (309) 219 1pzg_A LDH, lactate dehydrogen 45.1 14 0.00057 15.8 5.4 62 270-335 245-306 (331) 220 3fef_A Putative glucosidase LP 45.1 14 0.00057 15.8 7.1 51 62-118 115-166 (450) 221 2bru_C NAD(P) transhydrogenase 45.0 14 0.00057 15.8 4.4 132 191-324 29-169 (186) 222 3c97_A Signal transduction his 44.8 12 0.00052 16.1 2.7 23 87-109 53-77 (140) 223 2pvp_A D-alanine-D-alanine lig 44.5 14 0.00058 15.8 3.0 29 1-29 18-51 (367) 224 3jte_A Response regulator rece 44.3 14 0.00059 15.8 3.1 32 88-119 49-82 (143) 225 2ppv_A Uncharacterized protein 44.1 14 0.00059 15.7 3.3 50 1-57 2-60 (332) 226 1rtt_A Conserved hypothetical 44.1 14 0.00059 15.7 4.3 35 2-36 5-39 (193) 227 3ko8_A NAD-dependent epimerase 43.9 14 0.0006 15.7 4.6 31 4-40 1-31 (312) 228 1spx_A Short-chain reductase f 43.8 14 0.0006 15.7 4.6 41 1-44 1-43 (278) 229 2a33_A Hypothetical protein; s 43.5 14 0.00061 15.7 5.6 143 193-347 14-195 (215) 230 3mwf_A Iron-regulated ABC tran 43.4 14 0.00061 15.7 2.9 35 81-120 76-110 (298) 231 3gfv_A Uncharacterized ABC tra 43.3 6.9 0.00029 17.8 1.2 20 81-100 88-107 (303) 232 3bre_A Probable two-component 43.0 13 0.00053 16.0 2.5 38 84-121 59-100 (358) 233 1zn8_A APRT, adenine phosphori 42.7 15 0.00062 15.6 6.3 55 63-120 29-86 (180) 234 1d4o_A NADP(H) transhydrogenas 42.7 15 0.00062 15.6 4.7 134 192-327 22-164 (184) 235 1mld_A Malate dehydrogenase; o 42.6 12 0.00049 16.3 2.2 27 307-334 260-287 (314) 236 3nkl_A UDP-D-quinovosamine 4-d 42.5 15 0.00063 15.6 6.9 103 4-134 5-110 (141) 237 1udb_A Epimerase, UDP-galactos 42.5 15 0.00063 15.6 7.4 31 4-40 1-31 (338) 238 1j9j_A Stationary phase surviV 42.5 13 0.00054 16.0 2.4 12 83-94 81-92 (247) 239 1jq5_A Glycerol dehydrogenase; 42.4 15 0.00063 15.6 4.7 87 5-125 33-119 (370) 240 1zgz_A Torcad operon transcrip 42.4 15 0.00063 15.6 3.1 34 86-120 44-79 (122) 241 1gud_A ALBP, D-allose-binding 42.2 15 0.00063 15.5 10.4 204 4-254 2-221 (288) 242 2oqr_A Sensory transduction pr 42.0 15 0.00064 15.5 2.9 78 1-121 3-82 (230) 243 3obi_A Formyltetrahydrofolate 42.0 9.5 0.0004 16.9 1.7 17 327-343 243-259 (288) 244 3bbn_B Ribosomal protein S2; s 42.0 15 0.00064 15.5 4.9 18 279-296 173-190 (231) 245 2ho3_A Oxidoreductase, GFO/IDH 41.8 15 0.00064 15.5 7.9 89 4-118 2-90 (325) 246 1rd5_A Tryptophan synthase alp 41.7 14 0.00058 15.8 2.5 10 7-16 23-32 (262) 247 3h5i_A Response regulator/sens 41.7 15 0.00064 15.5 3.1 35 86-121 48-85 (140) 248 2aqj_A Tryptophan halogenase, 41.7 4.7 0.0002 18.8 0.1 27 1-27 1-29 (538) 249 2ejb_A Probable aromatic acid 41.2 16 0.00065 15.4 4.7 32 6-40 4-35 (189) 250 1l5x_A SurviVal protein E; str 41.2 14 0.00057 15.8 2.4 33 86-118 82-123 (280) 251 1o97_C Electron transferring f 41.1 16 0.00066 15.4 6.9 94 15-121 38-146 (264) 252 2xbl_A Phosphoheptose isomeras 41.0 16 0.00066 15.4 5.3 31 88-120 116-149 (198) 253 3i23_A Oxidoreductase, GFO/IDH 40.6 16 0.00067 15.4 7.1 89 1-118 1-93 (349) 254 2gwr_A DNA-binding response re 40.4 13 0.00056 15.9 2.3 38 84-122 45-84 (238) 255 1yxo_A 4-hydroxythreonine-4-ph 40.2 16 0.00068 15.3 7.9 104 1-109 1-144 (328) 256 1n2s_A DTDP-4-, DTDP-glucose o 40.0 13 0.00056 15.9 2.2 60 4-94 1-60 (299) 257 3f6n_A Virion-associated prote 39.8 16 0.00069 15.3 5.1 27 64-90 12-38 (129) 258 3nbm_A PTS system, lactose-spe 39.6 16 0.00069 15.3 5.8 84 2-100 5-89 (108) 259 1usg_A Leucine-specific bindin 39.2 17 0.0007 15.2 4.2 36 84-121 65-100 (346) 260 3ic5_A Putative saccharopine d 38.7 17 0.00071 15.2 8.3 87 1-116 4-95 (118) 261 3p7m_A Malate dehydrogenase; p 38.5 17 0.00072 15.2 4.1 24 1-28 3-26 (321) 262 3ecs_A Translation initiation 38.1 17 0.00073 15.1 8.9 149 191-349 121-309 (315) 263 3lte_A Response regulator; str 37.5 18 0.00075 15.1 3.6 25 86-110 48-74 (132) 264 1geg_A Acetoin reductase; SDR 37.1 18 0.00075 15.0 5.9 33 1-40 1-33 (256) 265 1djl_A Transhydrogenase DIII; 37.1 18 0.00076 15.0 4.9 135 191-327 44-187 (207) 266 3hsk_A Aspartate-semialdehyde 37.0 10 0.00044 16.6 1.3 148 1-171 17-173 (381) 267 1vkm_A Conserved hypothetical 36.0 13 0.00054 16.0 1.6 48 262-310 143-200 (297) 268 1fjh_A 3alpha-hydroxysteroid d 35.1 19 0.00081 14.8 4.8 33 4-41 1-33 (257) 269 3bpp_A 1510-N membrane proteas 34.7 20 0.00082 14.8 4.9 64 78-145 28-97 (230) 270 2d4a_B Malate dehydrogenase; a 34.3 20 0.00084 14.7 5.0 61 270-334 223-283 (308) 271 3aek_A Light-independent proto 33.9 20 0.00085 14.7 3.5 171 54-251 86-279 (437) 272 3ff6_A Acetyl-COA carboxylase 33.5 20 0.00086 14.7 3.9 22 271-292 479-501 (760) 273 2hjs_A USG-1 protein homolog; 33.0 21 0.00088 14.6 8.2 94 1-119 3-97 (340) 274 2hqr_A Putative transcriptiona 33.0 21 0.00088 14.6 4.1 38 82-121 38-75 (223) 275 3brs_A Periplasmic binding pro 33.0 21 0.00088 14.6 3.2 39 79-120 56-96 (289) 276 3ghy_A Ketopantoate reductase 32.7 21 0.00089 14.6 3.7 49 1-54 1-51 (335) 277 3heb_A Response regulator rece 32.6 21 0.00089 14.6 2.7 38 83-120 54-95 (152) 278 2g36_A Tryptophanyl-tRNA synth 32.2 18 0.00077 15.0 1.9 27 1-28 10-36 (340) 279 3fvw_A Putative NAD(P)H-depend 32.1 22 0.00091 14.5 3.9 36 1-37 1-36 (192) 280 2bll_A Protein YFBG; decarboxy 31.7 22 0.00092 14.5 4.2 32 4-40 1-32 (345) 281 1g2q_A Adenine phosphoribosylt 31.7 22 0.00092 14.5 6.1 53 63-120 30-88 (187) 282 2v4n_A Multifunctional protein 31.2 15 0.00065 15.5 1.4 40 81-120 77-124 (254) 283 1ccw_A Protein (glutamate muta 31.1 22 0.00094 14.4 6.2 38 1-40 1-38 (137) 284 3hsy_A Glutamate receptor 2; l 31.1 22 0.00094 14.4 4.1 33 86-120 58-90 (376) 285 3hwr_A 2-dehydropantoate 2-red 31.0 22 0.00095 14.4 2.2 47 1-53 17-66 (318) 286 3guy_A Short-chain dehydrogena 30.9 23 0.00095 14.4 4.6 40 4-46 1-40 (230) 287 1smk_A Malate dehydrogenase, g 30.9 22 0.00092 14.4 2.1 27 307-334 268-295 (326) 288 2chu_A CEUE, enterochelin upta 30.8 23 0.00095 14.4 3.5 28 81-111 88-115 (296) 289 1vl8_A Gluconate 5-dehydrogena 30.7 23 0.00096 14.4 5.2 32 5-39 22-53 (267) 290 1qb7_A APRT, adenine phosphori 30.6 23 0.00096 14.3 5.9 45 71-120 52-100 (236) 291 2dc1_A L-aspartate dehydrogena 30.2 23 0.00097 14.3 8.1 78 4-118 1-78 (236) 292 3lkb_A Probable branched-chain 29.7 24 0.00099 14.2 3.8 36 82-120 69-104 (392) 293 3e8x_A Putative NAD-dependent 29.6 24 0.001 14.2 4.8 34 1-40 19-52 (236) 294 3bb8_A CDP-4-keto-6-deoxy-D-gl 29.5 6.3 0.00026 18.0 -0.8 47 84-132 154-203 (437) 295 1pj3_A NAD-dependent malic enz 29.5 21 0.00089 14.6 1.9 87 62-148 95-227 (564) 296 1vi6_A 30S ribosomal protein S 29.5 24 0.001 14.2 3.3 20 277-296 129-148 (208) 297 3o1l_A Formyltetrahydrofolate 29.4 20 0.00084 14.7 1.7 25 86-110 103-128 (302) 298 3ehd_A Uncharacterized conserv 29.1 22 0.00093 14.4 1.9 33 262-296 64-106 (162) 299 1o57_A PUR operon repressor; p 28.9 24 0.001 14.2 5.2 45 71-120 112-159 (291) 300 1c8b_A Spore protease; novel f 28.7 19 0.00079 14.9 1.5 13 85-97 183-195 (371) 301 2c82_A 1-deoxy-D-xylulose 5-ph 28.6 25 0.001 14.1 4.8 28 318-345 329-356 (413) 302 3fdj_A DEGV family protein; GU 28.4 17 0.00072 15.2 1.2 13 217-229 98-110 (278) 303 1b73_A Glutamate racemase; iso 28.2 25 0.0011 14.1 6.8 98 4-127 1-99 (254) 304 1oc2_A DTDP-glucose 4,6-dehydr 28.1 25 0.0011 14.1 5.2 37 1-40 1-37 (348) 305 1wb0_A Chitinase 1, chitotrios 28.0 25 0.0011 14.1 9.8 159 16-197 52-243 (445) 306 1uls_A Putative 3-oxoacyl-acyl 27.9 25 0.0011 14.0 7.5 31 5-40 6-36 (245) 307 3mc6_A Sphingosine-1-phosphate 27.9 25 0.0011 14.0 4.3 14 335-348 429-442 (497) 308 1efp_B ETF, protein (electron 27.6 26 0.0011 14.0 3.3 94 16-122 39-148 (252) 309 1yvr_A RO autoantigen, 60-kDa 27.6 21 0.00089 14.5 1.6 12 99-110 143-154 (538) 310 2fvy_A D-galactose-binding per 27.5 26 0.0011 14.0 4.5 84 4-120 3-90 (309) 311 3b8x_A WBDK, pyridoxamine 5-ph 27.3 14 0.00061 15.7 0.7 41 85-127 125-168 (390) 312 2pgn_A Cyclohexane-1,2-dione h 27.2 26 0.0011 14.0 5.3 36 86-122 66-102 (589) 313 3hdv_A Response regulator; PSI 27.0 25 0.0011 14.1 1.9 14 96-109 15-28 (136) 314 1vkz_A Phosphoribosylamine--gl 26.8 26 0.0011 13.9 4.7 42 1-48 13-54 (412) 315 2x9g_A PTR1, pteridine reducta 26.7 27 0.0011 13.9 2.8 31 5-40 24-54 (288) 316 3nep_X Malate dehydrogenase; h 26.5 27 0.0011 13.9 5.2 33 4-40 1-34 (314) 317 2vk2_A YTFQ, ABC transporter p 26.4 27 0.0011 13.9 3.4 90 2-123 1-92 (306) 318 2etv_A Iron(III) ABC transport 26.3 27 0.0011 13.9 4.5 65 81-152 89-153 (346) 319 3lxy_A 4-hydroxythreonine-4-ph 26.3 27 0.0011 13.9 9.0 101 5-109 10-149 (334) 320 2qk4_A Trifunctional purine bi 25.7 28 0.0012 13.8 6.6 87 4-118 25-116 (452) 321 1d4a_A DT-diaphorase, quinone 25.6 28 0.0012 13.8 8.7 52 1-59 1-56 (273) 322 1pt6_A Integrin alpha-1; X-RAY 25.5 28 0.0012 13.8 4.1 12 88-99 7-18 (213) 323 3ofo_B 30S ribosomal protein S 25.2 28 0.0012 13.7 5.5 19 278-296 164-182 (218) 324 3lhs_A Ferrichrome ABC transpo 25.2 28 0.0012 13.7 3.2 28 81-110 78-105 (296) 325 1ez4_A Lactate dehydrogenase; 25.1 28 0.0012 13.7 5.6 24 2-29 4-27 (318) 326 3ck2_A Conserved uncharacteriz 25.0 18 0.00076 15.0 0.8 36 1-42 4-41 (176) 327 2hl0_A Threonyl-tRNA synthetas 25.0 18 0.00077 15.0 0.8 70 73-174 57-137 (143) 328 1o0s_A NAD-ME, NAD-dependent m 24.6 29 0.0012 13.7 2.1 62 86-147 168-262 (605) 329 2bln_A Protein YFBG; transfera 24.5 29 0.0012 13.6 7.0 81 4-99 1-86 (305) 330 2oga_A Transaminase; PLP-depen 24.2 18 0.00075 15.1 0.7 44 86-131 149-195 (399) 331 1t2d_A LDH-P, L-lactate dehydr 24.1 30 0.0012 13.6 5.4 24 310-334 274-297 (322) 332 3lyu_A Putative hydrogenase; t 23.8 30 0.0013 13.6 5.0 39 79-119 98-136 (142) 333 2pzm_A Putative nucleotide sug 23.8 30 0.0013 13.6 4.0 32 2-39 19-50 (330) 334 3iac_A Glucuronate isomerase; 23.7 30 0.0013 13.5 3.8 107 58-172 113-250 (473) 335 2v6b_A L-LDH, L-lactate dehydr 23.7 30 0.0013 13.5 2.1 34 4-41 1-35 (304) 336 3gpi_A NAD-dependent epimerase 23.6 30 0.0013 13.5 4.0 33 1-40 1-33 (286) 337 1ll7_A Chitinase 1; beta-alpha 23.5 30 0.0013 13.5 9.4 110 20-146 74-202 (392) 338 3i65_A Dihydroorotate dehydrog 23.5 30 0.0013 13.5 4.1 39 329-367 353-402 (415) 339 3inp_A D-ribulose-phosphate 3- 23.2 31 0.0013 13.5 2.8 18 194-211 138-155 (246) 340 2f62_A Nucleoside 2-deoxyribos 23.2 31 0.0013 13.5 2.1 33 262-296 62-107 (161) 341 1pno_A NAD(P) transhydrogenase 23.1 31 0.0013 13.5 5.7 135 191-327 22-165 (180) 342 3kyj_B CHEY6 protein, putative 22.9 31 0.0013 13.4 2.0 25 87-111 59-85 (145) 343 3k4t_A Virion-associated prote 22.7 32 0.0013 13.4 5.8 47 332-381 3-53 (95) 344 3l9w_A Glutathione-regulated p 22.2 32 0.0014 13.4 9.0 89 3-118 4-99 (413) 345 3md9_A Hemin-binding periplasm 21.8 33 0.0014 13.3 4.1 63 80-152 51-113 (255) 346 3g6m_A Chitinase, crchi1; inhi 21.8 33 0.0014 13.3 7.9 123 21-167 93-234 (406) 347 2el7_A Tryptophanyl-tRNA synth 21.6 22 0.00094 14.4 0.8 25 4-28 1-25 (337) 348 2nx2_A Hypothetical protein YP 21.6 33 0.0014 13.3 3.2 51 68-118 23-76 (181) 349 1zun_A Sulfate adenylyltransfe 21.6 33 0.0014 13.3 4.1 80 88-171 75-158 (325) 350 1o69_A Aminotransferase; struc 21.5 15 0.00062 15.6 -0.2 43 81-125 115-160 (394) 351 2jfz_A Glutamate racemase; cel 21.4 33 0.0014 13.3 7.8 99 4-128 1-100 (255) 352 3hbl_A Pyruvate carboxylase; T 21.3 34 0.0014 13.2 4.4 105 1-125 1-110 (1150) 353 2p6n_A ATP-dependent RNA helic 21.1 34 0.0014 13.2 5.0 41 78-120 44-84 (191) 354 3lop_A Substrate binding perip 21.0 34 0.0014 13.2 3.8 41 79-121 64-106 (364) 355 3h6g_A Glutamate receptor, ion 21.0 34 0.0014 13.2 5.2 37 86-124 69-105 (395) 356 2ehd_A Oxidoreductase, oxidore 21.0 34 0.0014 13.2 4.4 35 1-40 1-36 (234) 357 2qyt_A 2-dehydropantoate 2-red 20.9 34 0.0014 13.2 5.6 55 2-57 7-66 (317) 358 3ego_A Probable 2-dehydropanto 20.9 34 0.0014 13.2 2.5 47 1-54 1-50 (307) 359 1o1x_A Ribose-5-phosphate isom 20.9 34 0.0014 13.2 3.6 35 2-40 11-45 (155) 360 2dkn_A 3-alpha-hydroxysteroid 20.8 34 0.0014 13.2 4.6 32 4-40 1-32 (255) 361 2i2c_A Probable inorganic poly 20.7 35 0.0015 13.2 3.2 34 87-120 34-67 (272) 362 1ko7_A HPR kinase/phosphatase; 20.7 35 0.0015 13.2 2.6 76 37-119 29-109 (314) 363 1iy8_A Levodione reductase; ox 20.7 35 0.0015 13.1 4.6 36 5-43 14-49 (267) 364 2jky_A Hypoxanthine-guanine ph 20.7 35 0.0015 13.1 3.9 37 73-109 13-51 (213) 365 2qip_A Protein of unknown func 20.5 35 0.0015 13.1 3.0 16 85-100 6-21 (165) 366 3dfi_A Pseudoaglycone deacetyl 20.5 35 0.0015 13.1 3.8 17 78-94 135-151 (270) 367 2bd0_A Sepiapterin reductase; 20.5 35 0.0015 13.1 6.4 25 1-29 1-25 (244) No 1 >1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Probab=99.83 E-value=8.1e-18 Score=136.12 Aligned_cols=339 Identities=15% Similarity=0.176 Sum_probs=203.1 Q ss_pred CCCC--EEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECC----HHHHHCCCEEE-ECHHHCCEEEHHHHHHHHHH Q ss_conf 9874--5999976821478999-999999973899839999717----89994788065-04445311013674664599 Q gi|254780767|r 1 MNSL--KIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGG----PSLQKEGLVSL-FDFSELSVIGIMQVVRHLPQ 72 (383) Q Consensus 1 m~~m--ki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG----~~m~~~G~~~~-~~~~~l~v~G~~evl~~~~~ 72 (383) |+++ ||+|+||.+.|++..| .|+++|+++ +.++.|.+.+. +...+.|.+.. .++..+.--|+...+..... T Consensus 2 ~~~~~kkili~t~GtGGHi~~a~ala~~L~~~-g~eV~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 80 (364) T 1f0k_A 2 MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQ-GWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLR 80 (364) T ss_dssp -----CEEEEECCSSHHHHHHHHHHHHHHHTT-TCEEEEEECTTSTHHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHH T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH T ss_conf 99999769998689799999999999999968-89899998388005431221399579997788687772899999999 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCH Q ss_conf 99999999861001288868985-11776579999866301346311110022110036635579999986401567742 Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEK 151 (383) Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~ 151 (383) ..+.+......+...+||.++.+ +++.+- .+...+. .++|++.+. ++.|. .+-.+....+.|.+..- T Consensus 81 ~~~~~~~~~~i~~~~~~~~i~~~~~~~~~~--~~~~a~~--~~ip~~~~~-~~~~~--~~~~~~~~~~~~~~~~~----- 148 (364) T 1f0k_A 81 IFNAWRQARAIMKAYKPDVVLGMGGYVSGP--GGLAAWS--LGIPVVLHE-QNGIA--GLTNKWLAKIATKVMQA----- 148 (364) T ss_dssp HHHHHHHHHHHHHHHCCSEEEECSSTTHHH--HHHHHHH--TTCCEEEEE-CSSSC--CHHHHHHTTTCSEEEES----- T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCH--HHHHHHH--CCCCEEEEE-ECEEC--CHHHHHHHHHCCEEEEC----- T ss_conf 999999999999864777799846755686--9999753--588789985-12023--51477665414433210----- Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEE Q ss_conf 23200255314763882112210013558889761876556505998538743012305111899987640273512620 Q gi|254780767|r 152 EVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSL 231 (383) Q Consensus 152 ~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i 231 (383) +... .....++|+|....+..... ...+....++...+.++.||..+... ...+.+.+..+... ...++ T Consensus 149 --~~~~-~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~il~~~gs~G~~~~--~~~~~~~~~~l~~~---~~~v~ 217 (364) T 1f0k_A 149 --FPGA-FPNAEVVGNPVRTDVLALPL---PQQRLAGREGPVRVLVVGGSQGARIL--NQTMPQVAAKLGDS---VTIWH 217 (364) T ss_dssp --STTS-SSSCEECCCCCCHHHHTSCC---HHHHHTTCCSSEEEEEECTTTCCHHH--HHHHHHHHHHHGGG---EEEEE T ss_pred --CCCC-CCCCEEECCCCCCHHHCCCH---HHHHHCCCCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHCC---CEEEE T ss_conf --2344-55540557865412210214---55430246787531324677320225--68899999985026---55999 Q ss_pred CCC-CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEEEE-CCCCC-CEEEEEE-CC Q ss_conf 166-3368899999960488850552055203578876355233115668-887627530254-05774-1000010-24 Q gi|254780767|r 232 VTV-SSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVIL-ELALCGIPVVSI-YKSEW-IVNFFIF-YI 306 (383) Q Consensus 232 ~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV~-Yk~~~-lt~~i~~-li 306 (383) ... ................+..+.-...+..++|+.||++|+.+|..|+ |++.+|+|+|++ +.... -....+. +. T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~m~~lm~~aDlvIt~aG~~Ti~E~l~~g~P~I~iP~~~~~~~Q~~NA~~l~ 297 (364) T 1f0k_A 218 QSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLE 297 (364) T ss_dssp ECCTTCHHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHH T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCEEEECCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH T ss_conf 94441377787776640465415312787799999846777745884058899863898899807998776999999999 Q ss_pred CCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC Q ss_conf 6761023024407842612420548989999999998449899999999999999983899998999999999861 Q gi|254780767|r 307 KTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383) Q Consensus 307 k~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383) +.-. + .+++ |++.+++.+.+.+..+ |++.+.+|.++++ +++.+. +.++.|+.|.++. T Consensus 298 ~~G~-~--------~~i~---~~~l~~e~l~~~l~~l--~~~~l~~m~~~~~----~~~~~~-~~~~I~~~I~~l~ 354 (364) T 1f0k_A 298 KAGA-A--------KIIE---QPQLSVDAVANTLAGW--SRETLLTMAERAR----AASIPD-ATERVANEVSRVA 354 (364) T ss_dssp HTTS-E--------EECC---GGGCCHHHHHHHHHTC--CHHHHHHHHHHHH----HTCCTT-HHHHHHHHHHHHH T ss_pred HCCC-E--------EEEC---HHCCCHHHHHHHHHHH--CHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHH T ss_conf 7899-9--------9905---2109999999999863--9999999999987----258988-9999999999999 No 2 >1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Probab=99.73 E-value=8.6e-16 Score=122.74 Aligned_cols=340 Identities=13% Similarity=0.069 Sum_probs=209.3 Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEE-ECCHHH-------HHCCCEEEECHHHCCEEEHHHHHHHHHHH Q ss_conf 74-5999976821478999999999973899839999-717899-------94788065044453110136746645999 Q gi|254780767|r 3 SL-KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVG-VGGPSL-------QKEGLVSLFDFSELSVIGIMQVVRHLPQF 73 (383) Q Consensus 3 ~m-ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~g-iGG~~m-------~~~G~~~~~~~~~l~v~G~~evl~~~~~~ 73 (383) .| ||++++|--+-=...+.|+++|++. +++++.= +.|.+. ..-|++.-+++ ++.+-...+. -.+ T Consensus 4 ~MkkI~~v~GtR~e~~k~~pl~~~l~~~--~~~~~~li~tG~H~~~~~~~~~~~gi~~d~~~---~~~~~~~~~~--~~~ 76 (376) T 1v4v_A 4 GMKRVVLAFGTRPEATKMAPVYLALRGI--PGLKPLVLLTGQHREQLRQALSLFGIQEDRNL---DVMQERQALP--DLA 76 (376) T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHHHTS--TTEEEEEEECSSCHHHHHHHHHTTTCCCSEEC---CCCSSCCCHH--HHH T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHCCCHHCCCCCCCCC---CCCCCCCCHH--HHH T ss_conf 9988999997018499999999999728--99988999826885667471134099766567---8888888899--999 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC------CCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 9999999861001288868985117765799998663013463111100------2211003663557999998640156 Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC------PSVWAWREGRARKMCAYINQVISIL 147 (383) Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~------PqvWAWr~~R~k~~~~~~d~~~~if 147 (383) -+....+.+.+.+.+||+|+...-....|-.|=.++. .+||++|+-+ .+-|++.+..-+.+.+..|..+|-. T Consensus 77 ~~~~~~~~~il~~~kpD~Vlv~GDr~~~la~a~aa~~--~~ipi~HiegG~rsg~~~~~~~ee~~R~~i~~ls~~hf~~~ 154 (376) T 1v4v_A 77 ARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFL--EGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPT 154 (376) T ss_dssp HHHHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHH--TTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESS T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEECC T ss_conf 9999999999740599989996897079999999986--29747986617666666766346656222143341776266 Q ss_pred CCCHHHHHCCCCC---CEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCC Q ss_conf 7742232002553---1476388211221001355888976187655650599853874301230511189998764027 Q gi|254780767|r 148 PFEKEVMQRLGGP---PTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRN 224 (383) Q Consensus 148 pFE~~~f~k~~~~---~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~ 224 (383) +...+-..+. |. ++..||+|..|.+.... +..+.......++.+.+. --|.... ....-+.+++..+.+.. T Consensus 155 ~~~~~~L~~~-G~~~~~I~~vG~p~iD~i~~~~---~~~~~~~~~~~~~~~lvt-~H~~~n~-~~~~~~~~~~~~~~~~~ 228 (376) T 1v4v_A 155 PLAKANLLKE-GKREEGILVTGQTGVDAVLLAA---KLGRLPEGLPEGPYVTVT-MHRRENW-PLLSDLAQALKRVAEAF 228 (376) T ss_dssp HHHHHHHHTT-TCCGGGEEECCCHHHHHHHHHH---HHCCCCTTCCSSCEEEEC-CCCGGGG-GGHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHH---HHHHCHHHHCCCCEEEEE-ECCCCCC-HHHHHHHHHHHHHHHHC T ss_conf 8899999860-6677629981762488899999---863012330444315898-4255541-04889999999998646 Q ss_pred CCCEEEECCCCCHHH--HHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECC-CCCCE Q ss_conf 351262016633688--999999604888505520--5520357887635523311566888762753025405-77410 Q gi|254780767|r 225 PFFRFSLVTVSSQEN--LVRCIVSKWDISPEIIID--KEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYK-SEWIV 299 (383) Q Consensus 225 ~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~i~~~--~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk-~~~lt 299 (383) ++..++++..+.... ......+. ..+..++-. ..+...+++.|+++++-||+...|++.+|+|+|++-. +.+-. T Consensus 229 ~~~~~i~~~~~~~~~~~~~~~~~~~-~~ni~~i~~l~~~~~l~ll~~s~~vignSss~i~Ea~~lg~P~I~ir~~~eRqe 307 (376) T 1v4v_A 229 PHLTFVYPVHLNPVVREAVFPVLKG-VRNFVLLDPLEYGSMAALMRASLLLVTDSGGLQEEGAALGVPVVVLRNVTERPE 307 (376) T ss_dssp TTSEEEEECCSCHHHHHHHHHHHTT-CTTEEEECCCCHHHHHHHHHTEEEEEESCHHHHHHHHHTTCCEEECSSSCSCHH T ss_pred CCCCEEECCCCCHHHHHHHHHHHHC-CCCCEEECCCCHHHHHHHHHHCEEEECCCCHHHHHHHHHCCCEEEECCCCCCHH T ss_conf 6662231357621235677776513-342013147547889998763218971782199999981997898178766888 Q ss_pred EEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 00010246761023024407842612420548989999999998449899999999999999983899998999999999 Q gi|254780767|r 300 NFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVL 379 (383) Q Consensus 300 ~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~ 379 (383) . + -.|.-+. -..+++.|.+++..+++|+..+.++.+ ...-.| .|.|+++-+++|. T Consensus 308 g-----~----------~~g~~~l-----v~~d~~~I~~~i~~~l~~~~~~~~~~~----~~npYG-dG~as~rI~~~L~ 362 (376) T 1v4v_A 308 G-----L----------KAGILKL-----AGTDPEGVYRVVKGLLENPEELSRMRK----AKNPYG-DGKAGLMVARGVA 362 (376) T ss_dssp H-----H----------HHTSEEE-----CCSCHHHHHHHHHHHHTCHHHHHHHHH----SCCSSC-CSCHHHHHHHHHH T ss_pred H-----H----------HCCEEEE-----CCCCHHHHHHHHHHHHHCHHHHHHHCC----CCCCCC-CCHHHHHHHHHHH T ss_conf 9-----9----------7390387-----379999999999999709898875102----789898-9879999999999 Q ss_pred HHCC Q ss_conf 8619 Q gi|254780767|r 380 QVLG 383 (383) Q Consensus 380 ~~Lg 383 (383) ++|+ T Consensus 363 ~~l~ 366 (376) T 1v4v_A 363 WRLG 366 (376) T ss_dssp HHTT T ss_pred HHHC T ss_conf 9858 No 3 >3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Probab=99.71 E-value=4.1e-14 Score=111.63 Aligned_cols=344 Identities=13% Similarity=0.111 Sum_probs=183.6 Q ss_pred CCCCEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEEECHHHCCEEEHHH-----------H Q ss_conf 98745999976821478999-99999997389983999971--7899947880650444531101367-----------4 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLFDFSELSVIGIMQ-----------V 66 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~~~~~~l~v~G~~e-----------v 66 (383) |++.+|+++++-..||+..+ .|.++|.++ +.++.+.+-+ .+..++.|++...--......+..+ . T Consensus 2 m~~~~il~~~~~g~GH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (402) T 3ia7_A 2 MRQRHILFANVQGHGHVYPSLGLVSELARR-GHRITYVTTPLFADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLH 80 (402) T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 999989998998464799999999999988-8989999781066688866986897377644234543223344215678 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHH-HHHHHHHHHCCCCCCEEEECCCCCCCC------------CC-- Q ss_conf 664599999999998610012888689851177657-999986630134631111002211003------------66-- Q gi|254780767|r 67 VRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTH-RVAKRVRKKMPNLPIINYVCPSVWAWR------------EG-- 131 (383) Q Consensus 67 l~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl-~lak~lkk~~~~ipvi~yv~PqvWAWr------------~~-- 131 (383) ...+.......+.+.+.+.+.+||++|.-.++-+-. ..|+. .++|.+.... ..|.|. .. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~~a~~-----~~~P~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 154 (402) T 3ia7_A 81 LVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAAR-----WDRPAVRLTG-GFAANEHYSLFKELWKSNGQRH 154 (402) T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHH-----HTCCEEEEES-SCCCBTTBCHHHHHHHHHTCCC T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH-----HCCCEEEEEE-CCCCCCCCCCCCHHHCCCCCCC T ss_conf 999999999999999987434986896267400279999998-----0898799972-2454432212201100112222 Q ss_pred --CHHHHHHHHHHHC---------------------CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf --3557999998640---------------------15677422320025531476388211221001355888976187 Q gi|254780767|r 132 --RARKMCAYINQVI---------------------SILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNT 188 (383) Q Consensus 132 --R~k~~~~~~d~~~---------------------~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~ 188 (383) ....+.+..+.+. ..++.+.+...........++|-++.... ........ T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~ 227 (402) T 3ia7_A 155 PADVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDERFAFVGPTLTGRD-------GQPGWQPP 227 (402) T ss_dssp GGGSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGCCTTEEECCCCCCC-----------CCCCCS T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHCCCCHHHCCCCCCCCCCEEECCCCCCCCC-------CCCCCCCC T ss_conf 24689999999999998288973266663011012305763214665556772554365445521-------00100003 Q ss_pred CCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH Q ss_conf 65565059985387430123051118999876402735126201663368899999960488850552055203578876 Q gi|254780767|r 189 PSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTC 268 (383) Q Consensus 189 ~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s 268 (383) ..+.+.|.+.-||........+. ..++.+.+. ...+++...+.... ........+..+. ...+...++.++ T Consensus 228 ~~~~~~v~~~~g~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~l~~~v~~~-~~~~~~~~l~~~ 298 (402) T 3ia7_A 228 RPDAPVLLVSLGNQFNEHPEFFR---ACAQAFADT--PWHVVMAIGGFLDP---AVLGPLPPNVEAH-QWIPFHSVLAHA 298 (402) T ss_dssp STTCCEEEEECCSCSSCCHHHHH---HHHHHHTTS--SCEEEEECCTTSCG---GGGCSCCTTEEEE-SCCCHHHHHTTE T ss_pred CCCCCEEEECCCCCCCCCHHHHH---HHHHHHHHC--CCEEEEEECCCCCH---HHHHCCCCCEEEE-ECCCHHHHHHCC T ss_conf 67785698647753337899999---999998746--95799961898875---5662079978995-116726653100 Q ss_pred HHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCH Q ss_conf 355233115668-8876275302540577410000102467610230244078426124205489899999999984498 Q gi|254780767|r 269 NAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDT 347 (383) Q Consensus 269 d~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~ 347 (383) |++|+.+|..|+ |++.+|+|+|++.-.+.=.......+.-.-+|+ .++ .+++|++.|++++.++++|+ T Consensus 299 ~~~i~~gG~~t~~Eal~~G~P~v~iP~~~~dq~~na~~l~~~G~g~--------~~~---~~~~~~~~La~ai~~ll~d~ 367 (402) T 3ia7_A 299 RACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS--------VLR---PDQLEPASIREAVERLAADS 367 (402) T ss_dssp EEEEECCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEE--------ECC---GGGCSHHHHHHHHHHHHHCH T ss_pred CEEEEECCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE--------ECC---CCCCCHHHHHHHHHHHHCCH T ss_conf 1366523556699999809998995598662999999999879889--------806---03699999999999997799 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC Q ss_conf 999999999999999838999989999999998619 Q gi|254780767|r 348 LQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVLG 383 (383) Q Consensus 348 ~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~Lg 383 (383) ++|+++. +.++.+.... +.+++++.|.++++ T Consensus 368 ~~r~~~~----~~~~~~~~~~-~~~~~v~~ie~~l~ 398 (402) T 3ia7_A 368 AVRERVR----RMQRDILSSG-GPARAADEVEAYLG 398 (402) T ss_dssp HHHHHHH----HHHHHHHTSC-HHHHHHHHHHHHHH T ss_pred HHHHHHH----HHHHHHHCCC-CHHHHHHHHHHHHH T ss_conf 9999999----9999987579-79999999999861 No 4 >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} Probab=99.65 E-value=1.3e-13 Score=108.30 Aligned_cols=337 Identities=15% Similarity=0.141 Sum_probs=195.8 Q ss_pred CCEEEEEEC-CCCH-HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 745999976-8214-78999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 3 SLKIAVIAG-EISG-DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 3 ~mki~i~aG-E~SG-D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) +|||.|++= ..+| ..+...|.++|.++ +.++.+..-+.+.........+ ....+.+.. .......+........+ T Consensus 15 kMKI~iv~~P~~GG~~~~~~~La~~L~~~-Gh~V~vit~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l 91 (394) T 2jjm_A 15 KLKIGITCYPSVGGSGVVGTELGKQLAER-GHEIHFITSGLPFRLNKVYPNI-YFHEVTVNQ-YSVFQYPPYDLALASKM 91 (394) T ss_dssp CCEEEEECCC--CHHHHHHHHHHHHHHHT-TCEEEEECSSCC----CCCTTE-EEECCCCC-----CCSCCHHHHHHHHH T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCE-EEEEECCCC-CCCCCCCHHHHHHHHHH T ss_conf 47799989999995999999999999977-9989999479986521137970-699704666-65001461369999999 Q ss_pred HHHCCCCCCCEEEEECH--HHHHHHHHHHHHHHCCCCCCEEEEC---CCCCCCCCCCH---HHHHHHHHHHCCCCCCCHH Q ss_conf 86100128886898511--7765799998663013463111100---22110036635---5799999864015677422 Q gi|254780767|r 81 VELIVSSKPDVLLIVDN--PDFTHRVAKRVRKKMPNLPIINYVC---PSVWAWREGRA---RKMCAYINQVISILPFEKE 152 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~--pgFnl~lak~lkk~~~~ipvi~yv~---PqvWAWr~~R~---k~~~~~~d~~~~ifpFE~~ 152 (383) .+.+...+||++..-+. ..+...++++... .++|+++.+- +..|.+..+.. ...-+..|.+.++-....+ T Consensus 92 ~~~~~~~~~Dii~~~~~~~~~~~~~l~~~~~~--~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 169 (394) T 2jjm_A 92 AEVAQRENLDILHVHYAIPHAICAYLAKQMIG--ERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLIN 169 (394) T ss_dssp HHHHHHHTCSEEEECSSTTHHHHHHHHHHHTT--TCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHHHH T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHHCC--CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECHHHHH T ss_conf 99998749968998887707999999998539--9972999957864111111077999999999748899992488999 Q ss_pred HHHCCC--CCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEE Q ss_conf 320025--531476388211221001355888976187655650599853874301230511189998764027351262 Q gi|254780767|r 153 VMQRLG--GPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFS 230 (383) Q Consensus 153 ~f~k~~--~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~ 230 (383) .+.+.. .-++..+.++.........+....+...++.+++++| ++.| |-.+ .+....+++++..+.+. ++..++ T Consensus 170 ~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~G-r~~~-~K~~~~li~a~~~~~~~-~~~~~~ 245 (394) T 2jjm_A 170 ETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKIL-IHIS-NFRK-VKRVQDVVQAFAKIVTE-VDAKLL 245 (394) T ss_dssp HHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHHTTCC---CEE-EEEC-CCCG-GGTHHHHHHHHHHHHHS-SCCEEE T ss_pred HHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCEE-EEEE-ECCC-CCCHHHHHHHHHHHCCC-CCEEEE T ss_conf 999961885668996676663235875678887751888667379-9875-0454-30045666677651123-311577 Q ss_pred ECCCCCHHHHHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEE Q ss_conf 01663368899999960488850552--0552035788763552331-----1566888762753025405774100001 Q gi|254780767|r 231 LVTVSSQENLVRCIVSKWDISPEIII--DKEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFI 303 (383) Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~ 303 (383) +.......+.++...++.+....+.. ..++..+.+..||+.+..| |++.+|++.+|+|. |+..++.+..++ T Consensus 246 i~G~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~EAma~G~Pv-I~s~~gg~~e~v- 323 (394) T 2jjm_A 246 LVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPC-IGTRVGGIPEVI- 323 (394) T ss_dssp EECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCE-EEECCTTSTTTC- T ss_pred EECCCCCCCCCCCCHHCCCCCCCEEECCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCE-EEECCCCHHHHH- T ss_conf 523885110111100014766530103541210002333202467631101114779998559838-992799869985- Q ss_pred ECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHCC Q ss_conf 02467610230244078426124205489899999999984498999999999999-9998389 Q gi|254780767|r 304 FYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LWDRMNT 366 (383) Q Consensus 304 ~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~~~Lg~ 366 (383) .-...|+ ++ +.-+++.+++++.++++|++.++++.++..+ +.+.... T Consensus 324 ---~~~~~G~--------l~-----~~~d~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 371 (394) T 2jjm_A 324 ---QHGDTGY--------LC-----EVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRS 371 (394) T ss_dssp ---CBTTTEE--------EE-----CTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCH T ss_pred ---CCCCEEE--------EE-----CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH T ss_conf ---0797189--------97-----799999999999999769999999999999999986899 No 5 >3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora} Probab=99.63 E-value=1.6e-12 Score=101.08 Aligned_cols=340 Identities=12% Similarity=0.133 Sum_probs=183.2 Q ss_pred CC-EEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEEE-C-----HH-----HCCEEEHHHHH Q ss_conf 74-5999976821478999-99999997389983999971--7899947880650-4-----44-----53110136746 Q gi|254780767|r 3 SL-KIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLF-D-----FS-----ELSVIGIMQVV 67 (383) Q Consensus 3 ~m-ki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~~-~-----~~-----~l~v~G~~evl 67 (383) +| ||++++...-||+.-. .|.++|.++ +.++.+..-. -+.+++.|++..- + .. ...-.+..... T Consensus 19 ~m~~il~~~~~~~GH~~p~l~la~~L~~r-GH~V~v~t~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (416) T 3iaa_A 19 HMAHLLIVNVASHGLILPTLTVVTELVRR-GHRVSYVTAGGFAEPVRAAGATVVPYQSEIIDADAAEVFGSDDLGVRPHL 97 (416) T ss_dssp -CCEEEEECCSCHHHHHHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHTTCEEEECCCSGGGCCHHHHHHSCSSCHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHCCCEEEECCCCCCCCCCHHCCCCCCCCHHHHH T ss_conf 99808997799563799999999999978-89899996823677898679879972776565330110365431134689 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHH-HHHHHHHHHHCCCCCCEEEECCCCCCC----------------CC Q ss_conf 6459999999999861001288868985117765-799998663013463111100221100----------------36 Q gi|254780767|r 68 RHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFT-HRVAKRVRKKMPNLPIINYVCPSVWAW----------------RE 130 (383) Q Consensus 68 ~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn-l~lak~lkk~~~~ipvi~yv~PqvWAW----------------r~ 130 (383) ..+........++.+.+...+||+++.-.++..- ..+|... ++|.+..... .+.+ .. T Consensus 98 ~~~~~~~~~~~~l~~~i~~~~pDvv~~~~~~~~~~~~~a~~~-----~~p~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 171 (416) T 3iaa_A 98 MYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARW-----RRPAVRLSAA-FASNEHYSFSQDMVTLAGTIDP 171 (416) T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSEEEEESTTHHHHHHHHHHH-----TCCEEEEESS-CCCCSSCCHHHHHHHHHTCCCG T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHC-----CCCEEEEECC-CCCCCCCCCCCCCCCCCCCCCH T ss_conf 999999999999999972689818998264302688999970-----8986998145-3211111234210122344662 Q ss_pred CCHHHHHHHHHHHCC---------------------CCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 635579999986401---------------------56774223200255314763882112210013558889761876 Q gi|254780767|r 131 GRARKMCAYINQVIS---------------------ILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTP 189 (383) Q Consensus 131 ~R~k~~~~~~d~~~~---------------------ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~ 189 (383) .+.+.+...++.+.. ..+-+-+.....-..++.++|.++.+.... ....... T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~ 244 (416) T 3iaa_A 172 LDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPCFDDRRFL-------GEWTRPA 244 (416) T ss_dssp GGCHHHHHHHHHHHHHTTCCSCHHHHHTCCCSCEEESSCTTTSTTGGGCCTTEEECCCCCCCCGGG-------CCCCCCS T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCCC-------HHHHHCC T ss_conf 343779999999999829983157776311101225799887577334687568704767631135-------4344304 Q ss_pred CCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 55650599853874301230511189998764027351262016633688999999604888505520552035788763 Q gi|254780767|r 190 SQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCN 269 (383) Q Consensus 190 ~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd 269 (383) ++.++|.+..|+..+.....+ ..+++.+.+. +..+++........ ........+..+ ...-.....+..|+ T Consensus 245 ~~~~~v~v~~g~~~~~~~~~~---~~~~~al~~~--~~~~~~~~~~~~~~---~~~~~l~~~v~~-~~~~p~~~~~~~~~ 315 (416) T 3iaa_A 245 DDLPVVLVSLGTTFNDRPGFF---RDCARAFDGQ--PWHVVMTLGGQVDP---AALGDLPPNVEA-HRWVPHVKVLEQAT 315 (416) T ss_dssp SCCCEEEEECCSSSCCCHHHH---HHHHHHTTTS--SCEEEEECCSSSCG---GGGCCCCTTEEE-ESCCCHHHHHHHEE T ss_pred CCCCEEEEECCCCCCCCHHHH---HHHHHHHHHC--CCEEEEEECCCCCH---HHHHCCCCCEEE-EEECCCCCCCCCCC T ss_conf 688479997784234679999---9999999857--98799995898775---666238997899-74236322232442 Q ss_pred HHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHH Q ss_conf 55233115668-88762753025405774100001024676102302440784261242054898999999999844989 Q gi|254780767|r 270 AAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTL 348 (383) Q Consensus 270 ~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~ 348 (383) ++++.+|..|+ |++.+|+|+|++- ...=.......+.-.-.|+ .++ ++++|++.|++++.++|+|++ T Consensus 316 ~~i~~gg~~t~~Eala~G~P~v~~p-~~~dq~~~a~~i~~~g~G~--------~l~---~~~~t~~~L~~al~~lL~dp~ 383 (416) T 3iaa_A 316 VCVTHGGMGTLMEALYWGRPLVVVP-QSFDVQPMARRVDQLGLGA--------VLP---GEKADGDTLLAAVGAVAADPA 383 (416) T ss_dssp EEEESCCHHHHHHHHHTTCCEEECC-CSGGGHHHHHHHHHTTSEE--------ECC---GGGCCHHHHHHHHHHHHSCHH T ss_pred EEEEECCCCCHHHHHHHCCCEEEEC-CCCCHHHHHHHHHHCCCEE--------ECC---CCCCCHHHHHHHHHHHHCCHH T ss_conf 3575156684999999499999935-7253899999999879889--------826---057999999999999977999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC Q ss_conf 9999999999999983899998999999999861 Q gi|254780767|r 349 QRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383) Q Consensus 349 ~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383) +|+++.+ ..+++.... +.+++++.|.++| T Consensus 384 ~r~~~~~----~~~~~~~~~-~~~~~a~~iE~~l 412 (416) T 3iaa_A 384 LLARVEA----MRGHVRRAG-GAARAADAVEAYL 412 (416) T ss_dssp HHHHHHH----HHHHHHHTC-HHHHHHHHHHHHH T ss_pred HHHHHHH----HHHHHHCCC-HHHHHHHHHHHHH T ss_conf 9999999----999986589-2999999999999 No 6 >1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Probab=99.60 E-value=5.5e-13 Score=104.22 Aligned_cols=337 Identities=14% Similarity=0.118 Sum_probs=196.1 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEE-EECCHH--HHHC-----CCEEEECHHHCCEEEHHHHHHHHHHHHH Q ss_conf 4599997682147899999999997389983999-971789--9947-----8806504445311013674664599999 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLV-GVGGPS--LQKE-----GLVSLFDFSELSVIGIMQVVRHLPQFIF 75 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~-giGG~~--m~~~-----G~~~~~~~~~l~v~G~~evl~~~~~~~~ 75 (383) |||++++|--+-=..-+.|+++|++. +++++. -++|.+ |... |...-+ ++++..-.+-+. ..+.+ T Consensus 1 mKi~~v~GtR~e~~kl~pli~~l~~~--~~~~~~li~tG~H~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~--~~~~~ 73 (384) T 1vgv_A 1 MKVLTVFGTRPEAIKMAPLVHALAKD--PFFEAKVCVTAQHREMLDQVLKLFSIVPDY---DLNIMQPGQGLT--EITCR 73 (384) T ss_dssp CEEEEEECSHHHHHHHHHHHHHHHHS--TTCEEEEEECCSSGGGGHHHHHHHTCCCSE---ECCCCSTTSCHH--HHHHH T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHHC--CCCCEEEEEECCCHHHHHHHHHHCCCCCCC---CCCCCCCCCCHH--HHHHH T ss_conf 93999997347199999999999738--998889999389889999999862978774---524688999999--99999 Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC----CCC-CCCCCCCHHHHHHHHHHHCCC-CCC Q ss_conf 99999861001288868985117765799998663013463111100----221-100366355799999864015-677 Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC----PSV-WAWREGRARKMCAYINQVISI-LPF 149 (383) Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~----Pqv-WAWr~~R~k~~~~~~d~~~~i-fpF 149 (383) ....+-+.+.+.+||+|+...-..-.+..|-.+.. .+||++|+-+ -.+ |.|-+.. .+..+|++.-+ |.- T Consensus 74 ~i~~~~~~l~~~kpD~v~v~GDr~e~la~a~aa~~--~~Ipi~HiegG~~s~~~~~~~~de~---~R~~i~klS~lhf~~ 148 (384) T 1vgv_A 74 ILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFY--QRIPVGHVEAGLRTGDLYSPWPEEA---NRTLTGHLAMYHFSP 148 (384) T ss_dssp HHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHT--TTCCEEEESCCCCCSCTTSSTTHHH---HHHHHHTTCSEEEES T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCHHHH---HHCCCCCCCEEEEEC T ss_conf 99999999985599989996898437669999997--5997899841445678777880676---530113212388743 Q ss_pred CHHHHH---CC--CCCCEEECCCCCCCCCCCCC----CHHHHH----HHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHH Q ss_conf 422320---02--55314763882112210013----558889----761876556505998538743012305111899 Q gi|254780767|r 150 EKEVMQ---RL--GGPPTTFVGHPLSSSPSILE----VYSQRN----KQRNTPSQWKKILLLPGSRAQEIYKILPFFESA 216 (383) Q Consensus 150 E~~~f~---k~--~~~~~~fVGHPl~d~~~~~~----~~~~~~----~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~ 216 (383) -+++.+ +. ..-++..||+|..|.+.... ...... .............++...|.......+..+.++ T Consensus 149 ~~~~~~rL~~~G~~~~~I~~vG~~~iD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~t~h~~~~~~~~~~~i~~~ 228 (384) T 1vgv_A 149 TETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHA 228 (384) T ss_dssp SHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHH T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHH T ss_conf 58999999871878543400166524367665443015267788762023221367876997346532220329999999 Q ss_pred HHHHHHCCCCCEEEECCCCCHHH--HHHHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEE Q ss_conf 98764027351262016633688--99999960488850552----0552035788763552331156688876275302 Q gi|254780767|r 217 VASLVKRNPFFRFSLVTVSSQEN--LVRCIVSKWDISPEIII----DKEQKKQVFMTCNAAMAASGTVILELALCGIPVV 290 (383) Q Consensus 217 ~~~l~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~i~~----~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~I 290 (383) +..+.+.+.++.++.|..+.... ........ ..++.. ...+...++..|++.++-||+.-.|++.+|+|+| T Consensus 229 l~~~~~~~~~~~ii~p~~~~~~~~~~~~~~~~~---~~ni~~~~~l~~~~~l~ll~~a~~vIgnSssgi~EA~~lg~P~I 305 (384) T 1vgv_A 229 LADIATTHQDIQIVYPVHLNPNVREPVNRILGH---VKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVL 305 (384) T ss_dssp HHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHHCSEEEESSSTGGGTGGGGTCCEE T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCC---CCCCEECCCCCHHHHHHHHHHCEEEEECCCCHHHHHHHHCCCEE T ss_conf 999876466706985348985301456777514---44431037855899999985156999468418888987299789 Q ss_pred EE-CCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 54-05774100001024676102302440784261242054898999999999844989999999999999998389999 Q gi|254780767|r 291 SI-YKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKP 369 (383) Q Consensus 291 V~-Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~ 369 (383) ++ ..+-+-. .+....+-+ -..+++.|.+++.++++|+..++.+. +...-.| .|. T Consensus 306 nir~~ter~~-----~~~~~~~i~---------------v~~~~~~I~~ai~~~l~~~~~~~~~~----~~~npYG-dG~ 360 (384) T 1vgv_A 306 VMRDTTERPE-----AVTAGTVRL---------------VGTDKQRIVEEVTRLLKDENEYQAMS----RAHNPYG-DGQ 360 (384) T ss_dssp EESSCCSCHH-----HHHHTSEEE---------------ECSSHHHHHHHHHHHHHCHHHHHHHH----SSCCTTC-CSC T ss_pred ECCCCCCCHH-----HHHCCEEEE---------------CCCCHHHHHHHHHHHHHCHHHHHHCC----CCCCCCC-CCH T ss_conf 7778766711-----443680598---------------68999999999999970978775414----4789898-985 Q ss_pred HHHHHHHHHHH Q ss_conf 89999999998 Q gi|254780767|r 370 AGHMAAEIVLQ 380 (383) Q Consensus 370 a~~~AA~~I~~ 380 (383) ++++..+++.+ T Consensus 361 as~rIv~~Lk~ 371 (384) T 1vgv_A 361 ACSRILEALKN 371 (384) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999983 No 7 >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* Probab=99.57 E-value=3.7e-14 Score=111.98 Aligned_cols=328 Identities=15% Similarity=0.163 Sum_probs=180.2 Q ss_pred CCCEEEEEEC----CCCH-HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEE-ECHHHCCEEEHHHHHHHHHHHHH Q ss_conf 8745999976----8214-7899999999997389983999971789994788065-04445311013674664599999 Q gi|254780767|r 2 NSLKIAVIAG----EISG-DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSL-FDFSELSVIGIMQVVRHLPQFIF 75 (383) Q Consensus 2 ~~mki~i~aG----E~SG-D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~-~~~~~l~v~G~~evl~~~~~~~~ 75 (383) ++|||.|++= ...| ..|...|.++|+++ +.++.++.-+.+.-.......- ...-.+... ..+..+..... T Consensus 19 ~~MkI~iv~~~~~p~~GG~~~~i~~La~~L~~~-GheV~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 94 (406) T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA-GHEVSVLAPASPHVKLPDYVVSGGKAVPIPYN---GSVARLRFGPA 94 (406) T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT-TCEEEEEESCCTTSCCCTTEEECCCCC---------------CCHH T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCEEECCCEEEECCCC---CCHHHHHCCHH T ss_conf 998899989987899987999999999999977-99899994289987776303227369981567---63233203599 Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC---CCCCCCCC--CCHHHHHHHHHHHCCCCCCC Q ss_conf 99999861001288868985117765799998663013463111100---22110036--63557999998640156774 Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC---PSVWAWRE--GRARKMCAYINQVISILPFE 150 (383) Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~---PqvWAWr~--~R~k~~~~~~d~~~~ifpFE 150 (383) ....+.+.+.+.++|++..-+... ..-.....++ .++|+++.+- +..|.++. +....+.+..+..++.-... T Consensus 95 ~~~~l~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~--~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~ 171 (406) T 2gek_A 95 THRKVKKWIAEGDFDVLHIHEPNA-PSLSMLALQA--AEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLA 171 (406) T ss_dssp HHHHHHHHHHHHCCSEEEEECCCS-SSHHHHHHHH--EESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESSHHH T ss_pred HHHHHHHHHHHCCCCEEEECCCCH-HHHHHHHHHH--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEECHHH T ss_conf 999999999974999899927736-8899999986--6998899977766440137899999999997478699908899 Q ss_pred HHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEE Q ss_conf 22320025531476388211221001355888976187655650599853874301230511189998764027351262 Q gi|254780767|r 151 KEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFS 230 (383) Q Consensus 151 ~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~ 230 (383) .+++.+....++..+-|++-... . .......+.+...+.| ++-| |..+-++.+..+++++..+.+..|+++++ T Consensus 172 ~~~~~~~~~~~~~~ip~gvd~~~-~----~~~~~~~~~~~~~~~i-l~vG-r~~~~~k~~~~~i~a~~~l~~~~~~~~l~ 244 (406) T 2gek_A 172 RRWQMEALGSDAVEIPNGVDVAS-F----ADAPLLDGYPREGRTV-LFLG-RYDEPRKGMAVLLAALPKLVARFPDVEIL 244 (406) T ss_dssp HHHHHHHHSSCEEECCCCBCHHH-H----HTCCCCTTCSCSSCEE-EEES-CTTSGGGCHHHHHHHHHHHHTTSTTCEEE T ss_pred HHHHHHHCCCCEEEECCCCCCCC-C----CCHHHHHCCCCCCCEE-EEEC-CCCCCCCCHHHHHHHHHHHHHHCCCCCEE T ss_conf 99998755899799789736200-0----0011110167668889-9973-55656653188999888887538884112 Q ss_pred ECCCCCHHHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHHHHCCC------HHHHHHHHHHCCCEEEECCCCCCEEEE Q ss_conf 0166336889999996048885055--20552035788763552331------156688876275302540577410000 Q gi|254780767|r 231 LVTVSSQENLVRCIVSKWDISPEII--IDKEQKKQVFMTCNAAMAAS------GTVILELALCGIPVVSIYKSEWIVNFF 302 (383) Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~l~~sd~ai~~S------GTaTLE~al~g~P~IV~Yk~~~lt~~i 302 (383) +......... .....+......+. ...++..+.++.||+.+..| |.+.+|++.+|+|.|+ ..++. T Consensus 245 i~G~~~~~~~-~~~~~~l~~~v~~~g~~~~~~~~~~l~~adv~v~ps~~~E~~~~~~lEAma~G~PvI~-s~~gg----- 317 (406) T 2gek_A 245 IVGRGDEDEL-REQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVA-SDLDA----- 317 (406) T ss_dssp EESCSCHHHH-HHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEE-CCCHH----- T ss_pred ECCCCCCCCC-CCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEE-ECCCC----- T ss_conf 3158853332-1001355543899223232067777640333346652345685899999977997999-46998----- Q ss_pred EECCCCCCEEEEHHHCCCC---CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC Q ss_conf 1024676102302440784---26124205489899999999984498999999999999999838 Q gi|254780767|r 303 IFYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMN 365 (383) Q Consensus 303 ~~lik~~~i~LpNii~~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg 365 (383) ++.++.+.. ++| .-+++.+++++..+++|++.++++.++..+..++.. T Consensus 318 ----------~~e~v~~~~~G~l~~-----~~d~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~fs 368 (406) T 2gek_A 318 ----------FRRVLADGDAGRLVP-----VDDADGMAAALIGILEDDQLRAGYVARASERVHRYD 368 (406) T ss_dssp ----------HHHHHTTTTSSEECC-----TTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGGB T ss_pred ----------HHHHHCCCCEEEEEC-----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC T ss_conf ----------699851797499977-----999999999999997699999999999999999699 No 8 >2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Probab=99.57 E-value=1.1e-11 Score=95.64 Aligned_cols=343 Identities=12% Similarity=0.103 Sum_probs=177.9 Q ss_pred CCCCEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEEE-C----HHHCCE----EEHHHHHH Q ss_conf 98745999976821478999-99999997389983999971--7899947880650-4----445311----01367466 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLF-D----FSELSV----IGIMQVVR 68 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~~-~----~~~l~v----~G~~evl~ 68 (383) +++.+|++++....||+... .|.++|+++ +.++.|.+-. .+..++.|++..- + ...... .+....+. T Consensus 10 ~~~~~ilf~~~p~~GHv~p~l~la~~L~~r-GH~V~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (424) T 2iya_A 10 VTPRHISFFNIPGHGHVNPSLGIVQELVAR-GHRVSYAITDEFAAQVKAAGATPVVYDSILPKESNPEESWPEDQESAMG 88 (424) T ss_dssp -CCCEEEEECCSCHHHHHHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHHTCEEEECCCCSCCTTCTTCCCCSSHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 999849997787163799999999999988-8989999684167778766982574077665222321125145789999 Q ss_pred H-HHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC---------CCCCCCCCC------- Q ss_conf 4-59999999999861001288868985117765799998663013463111100---------221100366------- Q gi|254780767|r 69 H-LPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC---------PSVWAWREG------- 131 (383) Q Consensus 69 ~-~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~---------PqvWAWr~~------- 131 (383) . ...+......+.+.+++.+||+||.-++......+|+.+ ++|++.... +.++.|... T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~pDvvi~~~~~~~~~~~a~~~-----~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (424) T 2iya_A 89 LFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKW-----DIPFVQLSPTFVAYEGFEEDVPAVQDPTADRGEE 163 (424) T ss_dssp HHHHHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHH-----TCCEEEEESSCCCCTTHHHHSGGGSCCCC----- T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH-----CCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCC T ss_conf 99999999999999998355996898255455999999983-----6985999525420222002454334544333332 Q ss_pred ---------------CHHHHHHHHHH-----------------------HCCCCCCCHHHHHCCCCCCEEECCCCCCCCC Q ss_conf ---------------35579999986-----------------------4015677422320025531476388211221 Q gi|254780767|r 132 ---------------RARKMCAYINQ-----------------------VISILPFEKEVMQRLGGPPTTFVGHPLSSSP 173 (383) Q Consensus 132 ---------------R~k~~~~~~d~-----------------------~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~~ 173 (383) ....+.+..+. .+...|.+-++.....+..+.++|....+. T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (424) T 2iya_A 164 AAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPTYGDR- 242 (424) T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTGGGCCTTEEECCCCCCCC- T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCCHHHCCCCCCCCCCEEECCCCCCCC- T ss_conf 1232222210244455677888899999999980888752766515752686177664476423687555336656653- Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCE Q ss_conf 00135588897618765565059985387430123051118999876402735126201663368899999960488850 Q gi|254780767|r 174 SILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPE 253 (383) Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 253 (383) .......+..+..+.|.+..|+...--...+..+.++.. +. +.+++......... ........+.. T Consensus 243 ------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~---~~~~~~~~~v~ 308 (424) T 2iya_A 243 ------SHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVD---GL--DWHVVLSVGRFVDP---ADLGEVPPNVE 308 (424) T ss_dssp ------GGGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHT---TC--SSEEEEECCTTSCG---GGGCSCCTTEE T ss_pred ------CCHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHH---HC--CEEEEEEECCCCCH---HHHHCCCCCEE T ss_conf ------320333322588857996477545570999999998876---24--60799971788875---67602899789 Q ss_pred EEEECCCCHHHHHHHHHHHCCCHHH-HHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCC Q ss_conf 5520552035788763552331156-688876275302540577410000102467610230244078426124205489 Q gi|254780767|r 254 IIIDKEQKKQVFMTCNAAMAASGTV-ILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIR 332 (383) Q Consensus 254 i~~~~~~~~~~l~~sd~ai~~SGTa-TLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~ 332 (383) + ...-...+++..++++++.+|.. ++|++.+|+|+|++-- ..=.......+.-.-+| . .+-++++| T Consensus 309 ~-~~~~p~~~~~~~~~~~i~hgG~~t~~Eal~~G~P~v~~P~-~~dQ~~na~~l~~~G~G-------~----~l~~~~~~ 375 (424) T 2iya_A 309 V-HQWVPQLDILTKASAFITHAGMGSTMEALSNAVPMVAVPQ-IAEQTMNAERIVELGLG-------R----HIPRDQVT 375 (424) T ss_dssp E-ESSCCHHHHHTTCSEEEECCCHHHHHHHHHTTCCEEECCC-SHHHHHHHHHHHHTTSE-------E----ECCGGGCC T ss_pred E-EECCCHHHHHCCCCEEEECCCCCHHHHHHHCCCCEEEECC-CCHHHHHHHHHHHCCCE-------E----EECCCCCC T ss_conf 9-6115757641254136750566769999981999998076-01499999999987988-------9----90504699 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC Q ss_conf 89999999998449899999999999999983899998999999999861 Q gi|254780767|r 333 SEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383) Q Consensus 333 ~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383) ++.+++++.++++|+.+|+++. ++.+++...+ +.++|+++|.++| T Consensus 376 ~~~l~~al~~ll~d~~~r~~~~----~~~~~~~~~~-~~~~a~~~iE~~l 420 (424) T 2iya_A 376 AEKLREAVLAVASDPGVAERLA----AVRQEIREAG-GARAAADILEGIL 420 (424) T ss_dssp HHHHHHHHHHHHHCHHHHHHHH----HHHHHHHTSC-HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCHHHHHHHH----HHHHHHHCCC-CHHHHHHHHHHHH T ss_conf 9999999999977999999999----9999876238-3999999999999 No 9 >3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Probab=99.55 E-value=5.4e-13 Score=104.29 Aligned_cols=342 Identities=13% Similarity=0.122 Sum_probs=195.7 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEE-EECCHH--HHHC-----CCEEEECHHHCCEEEHHHHHHHHHH Q ss_conf 9874599997682147899999999997389983999-971789--9947-----8806504445311013674664599 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLV-GVGGPS--LQKE-----GLVSLFDFSELSVIGIMQVVRHLPQ 72 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~-giGG~~--m~~~-----G~~~~~~~~~l~v~G~~evl~~~~~ 72 (383) +++|||++++|--.-=..-+.|+++|++. +.++++. -+.|.+ |... |+..-++ +.+.+-.+.+. .. T Consensus 6 ~~kmKI~~v~GtR~e~~kl~pli~~l~~~-~~~~~~~li~tG~H~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~--~~ 79 (375) T 3beo_A 6 TERLKVMTIFGTRPEAIKMAPLVLELQKH-PEKIESIVTVTAQHRQMLDQVLSIFGITPDFD---LNIMKDRQTLI--DI 79 (375) T ss_dssp SSCEEEEEEECSHHHHHHHHHHHHHHTTC-TTTEEEEEEECCSSSHHHHHHHHHHTCCCSEE---CCCCCTTCCHH--HH T ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHHCCCCCEE---EECCCCCCCHH--HH T ss_conf 65854999996447399999999999847-67887799994797899999999809998801---23588997899--99 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC--CCCCCCCCCCHHHHHHHHHHHCCC-CCC Q ss_conf 99999999861001288868985117765799998663013463111100--221100366355799999864015-677 Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC--PSVWAWREGRARKMCAYINQVISI-LPF 149 (383) Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~--PqvWAWr~~R~k~~~~~~d~~~~i-fpF 149 (383) +-+....+-+.+.+.+||+|+...-..-.+-.|-.+.. .+||++|.-+ .+.+++...-=...+..+|++.-+ |+- T Consensus 80 ~~~~~~~~~~~~~~~kpD~vlv~GDr~e~la~a~aa~~--~~ipi~HiegG~rs~~~~~~~~de~~R~~isklS~ihf~~ 157 (375) T 3beo_A 80 TTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFY--NQIPVGHVEAGLRTWDKYSPYPEEMNRQLTGVMADLHFSP 157 (375) T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHH--TTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEEES T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEECC T ss_conf 99999999999974799889994687247779999998--1983899624765477667877788763047543262058 Q ss_pred CHHHHHCC--CC---CCEEECCCCCCCCCCCCCCH---HHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHH Q ss_conf 42232002--55---31476388211221001355---888976187655650599853874301230511189998764 Q gi|254780767|r 150 EKEVMQRL--GG---PPTTFVGHPLSSSPSILEVY---SQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLV 221 (383) Q Consensus 150 E~~~f~k~--~~---~~~~fVGHPl~d~~~~~~~~---~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~ 221 (383) -++..++. .| -++..||+|..|.+...... ..... .+. +++ ..|+-.-|.......+..++.++..+. T Consensus 158 ~e~~~~rL~~~Ge~~~~If~vG~~~iD~i~~~~~~~~~~~~~~--~~~-~~~-~iLvt~Hr~~n~~~~~~~~~~~~~~~~ 233 (375) T 3beo_A 158 TAKSATNLQKENKDESRIFITGNTAIDALKTTVKETYSHPVLE--KLG-NNR-LVLMTAHRRENLGEPMRNMFRAIKRLV 233 (375) T ss_dssp SHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHCCSSCCCHHHH--TTT-TSE-EEEEECCCGGGTTHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHH--HCC-CCC-EEEEECCCCHHHCCHHHHHHHHHHHHH T ss_conf 5899999987588875488706079999999898864054667--516-686-899976862110025899999999888 Q ss_pred HCCCCCEEEECCCCCHHHH--HHHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECC- Q ss_conf 0273512620166336889--9999960488850552----05520357887635523311566888762753025405- Q gi|254780767|r 222 KRNPFFRFSLVTVSSQENL--VRCIVSKWDISPEIII----DKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYK- 294 (383) Q Consensus 222 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~i~~----~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk- 294 (383) ....+..++.|..+..... ......+. .++.. ...+...+++.|+++++-||+.-.|++.+|+|+|++-. T Consensus 234 ~~~~~~~ii~p~~~~~~~~~~~~~~~~~~---~~i~~~~~l~~~~fl~ll~~s~~vignSss~i~Ea~~lg~P~Inlr~~ 310 (375) T 3beo_A 234 DKHEDVQVVYPVHMNPVVRETANDILGDY---GRIHLIEPLDVIDFHNVAARSYLMLTDSGGVQEEAPSLGVPVLVLRDT 310 (375) T ss_dssp HHCTTEEEEEECCSCHHHHHHHHHHHTTC---TTEEEECCCCHHHHHHHHHTCSEEEECCHHHHHHHHHHTCCEEECSSC T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHCCC---CCCCCCCCCCHHHHHHHHHHHCEEEECCHHHHHHHHHHCCCEEEECCC T ss_conf 75458439973587511456666653146---642002677789887777652168834544788799709988980787 Q ss_pred CCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 77410000102467610230244078426124205489899999999984498999999999999999838999989999 Q gi|254780767|r 295 SEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMA 374 (383) Q Consensus 295 ~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~A 374 (383) +.|-... . .|.-+. ...+.+.|..++.++++|+..++++. +...-.|. |.|+++- T Consensus 311 teRq~g~-----~----------~g~~il-----~~~~~~~I~~~i~~~l~~~~~~~~~~----~~~npYGd-G~as~rI 365 (375) T 3beo_A 311 TERPEGI-----E----------AGTLKL-----AGTDEETIFSLADELLSDKEAHDKMS----KASNPYGD-GRASERI 365 (375) T ss_dssp CSCHHHH-----H----------TTSEEE-----CCSCHHHHHHHHHHHHHCHHHHHHHC----CCCCTTCC-SCHHHHH T ss_pred CCCHHHH-----H----------CCCEEE-----CCCCHHHHHHHHHHHHHCHHHHHHCC----CCCCCCCC-CHHHHHH T ss_conf 7577478-----5----------490598-----68999999999999973978775303----58898989-7299999 Q ss_pred HHHHHHHC Q ss_conf 99999861 Q gi|254780767|r 375 AEIVLQVL 382 (383) Q Consensus 375 A~~I~~~L 382 (383) .++|.+.+ T Consensus 366 v~~L~k~~ 373 (375) T 3beo_A 366 VEAILKHF 373 (375) T ss_dssp HHHHHHHT T ss_pred HHHHHHHH T ss_conf 99999873 No 10 >3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Probab=99.55 E-value=1.1e-12 Score=102.33 Aligned_cols=342 Identities=13% Similarity=0.096 Sum_probs=199.1 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEE-EECCHH-------HHHCCCEEEECHHHCCEEEHHHHHHHHHH Q ss_conf 9874599997682147899999999997389983999-971789-------99478806504445311013674664599 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLV-GVGGPS-------LQKEGLVSLFDFSELSVIGIMQVVRHLPQ 72 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~-giGG~~-------m~~~G~~~~~~~~~l~v~G~~evl~~~~~ 72 (383) |.+|||++++|--.-=..-+.|+++|++. +.+++.. -+.|.+ .+..|++.-++ ++++.-.+.+. -. T Consensus 25 M~kmKIl~v~GTRpe~ikl~pli~~l~~~-~~~~~~~li~TGqH~d~~~~~~~~~~i~~d~~---l~i~~~~~~~~--~~ 98 (403) T 3ot5_A 25 MAKIKVMSIFGTRPEAIKMAPLVLALEKE-PETFESTVVITAQHREMLDQVLEIFDIKPDID---LDIMKKGQTLA--EI 98 (403) T ss_dssp -CCEEEEEEECSHHHHHHHHHHHHHHHTC-TTTEEEEEEECC-----CHHHHHHTTCCCSEE---CCCCC-CCCHH--HH T ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCHHHHHHHHHHCCCCCCEE---EECCCCCCCHH--HH T ss_conf 86855999997368499999999999838-88888799990799789999998619998833---43488999999--99 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEE--CHHHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCCCH-HHHHHHHHHHCCC-C Q ss_conf 99999999861001288868985--117765799998663013463111100-22110036635-5799999864015-6 Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIV--DNPDFTHRVAKRVRKKMPNLPIINYVC-PSVWAWREGRA-RKMCAYINQVISI-L 147 (383) Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~i--D~pgFnl~lak~lkk~~~~ipvi~yv~-PqvWAWr~~R~-k~~~~~~d~~~~i-f 147 (383) +-+.+..+-+.+.+.+||+|+.. .+--+---+|.+ ..+||++|.-+ -.-|-|.++-. ...+..+|++..+ | T Consensus 99 ~~~~i~~~~~~~~~~kPD~vlV~GDr~~~la~alaa~----~~~Ipi~HiegG~rs~~~~~~~peE~~R~~i~kls~~hf 174 (403) T 3ot5_A 99 TSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATF----YQQKMLGHVEAGLRTWNKYSPFPEEMNRQLTGVMADIHF 174 (403) T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHH----HTTCEEEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEE T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH----HHCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEEEE T ss_conf 9999999999999739999999688804899999999----819978999646656776789807876412463005998 Q ss_pred CCCHHHHHCC--CCC---CEEECCCCCCCCCCCCCCHHHH-HHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHH Q ss_conf 7742232002--553---1476388211221001355888-976187655650599853874301230511189998764 Q gi|254780767|r 148 PFEKEVMQRL--GGP---PTTFVGHPLSSSPSILEVYSQR-NKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLV 221 (383) Q Consensus 148 pFE~~~f~k~--~~~---~~~fVGHPl~d~~~~~~~~~~~-~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~ 221 (383) +--+...++. .|. ++..||+|..|.+......... .....+. ++...++---|...+...+..+.+++..+. T Consensus 175 ~~t~~~~~~L~~~G~~~~~I~~vG~~~iD~l~~~~~~~~~~~~~~~~~--~~~~ilvt~Hr~en~~~~~~~~~~~~~~~~ 252 (403) T 3ot5_A 175 SPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENLG--DNRLILMTAHRRENLGEPMQGMFEAVREIV 252 (403) T ss_dssp ESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHSCT--TCEEEEECCCCHHHHTTHHHHHHHHHHHHH T ss_pred EECHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHCC--CCCEEEEECCCCHHCCCHHHHHHHHHHHHH T ss_conf 502787768875289966089968850888998787755073545345--685799985652220361678889988887 Q ss_pred HCCCCCEEEECCCCCHHH--HHHHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEE-CC Q ss_conf 027351262016633688--99999960488850552----055203578876355233115668887627530254-05 Q gi|254780767|r 222 KRNPFFRFSLVTVSSQEN--LVRCIVSKWDISPEIII----DKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSI-YK 294 (383) Q Consensus 222 ~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~i~~----~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~-Yk 294 (383) +..++..+++|..+.... ........ ..++.+ ...+...+++.|+++++=||+.-.|++.+|+|+|++ -. T Consensus 253 ~~~~~~~ii~p~~~~~~~~~~~~~~~~~---~~ni~~i~~l~~~~fl~ll~~a~~vIgdSss~~~EA~~lg~P~Inir~~ 329 (403) T 3ot5_A 253 ESREDTELVYPMHLNPAVREKAMAILGG---HERIHLIEPLDAIDFHNFLRKSYLVFTDSGGVQEEAPGMGVPVLVLRDT 329 (403) T ss_dssp HHCTTEEEEEECCSCHHHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHHEEEEEECCHHHHHHGGGTTCCEEECCSS T ss_pred HHCCCEEEEEECCCCHHHHHHHHHHHCC---CCCCEECCCCCHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCEEEECCC T ss_conf 5057248999547750221123333025---6410003772288899998642899966702777788609978980787 Q ss_pred CCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 77410000102467610230244078426124205489899999999984498999999999999999838999989999 Q gi|254780767|r 295 SEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMA 374 (383) Q Consensus 295 ~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~A 374 (383) +.+-... -.|.-+. ...+.+++..++.+++.++..+.++. +...-.|. |.++++. T Consensus 330 tERqeg~---------------~~g~~il-----v~~~~~~ii~~~~~~l~~~~~~~k~~----~~~npYGd-G~as~rI 384 (403) T 3ot5_A 330 TERPEGI---------------EAGTLKL-----IGTNKENLIKEALDLLDNKESHDKMA----QAANPYGD-GFAANRI 384 (403) T ss_dssp CSCHHHH---------------HHTSEEE-----CCSCHHHHHHHHHHHHHCHHHHHHHH----HSCCTTCC-SCHHHHH T ss_pred CCCHHHH---------------HCCEEEE-----CCCCHHHHHHHHHHHHHCHHHHHHHC----CCCCCCCC-CHHHHHH T ss_conf 7687368---------------5481599-----58999999999999985968776412----37899989-8699999 Q ss_pred HHHHHHHC Q ss_conf 99999861 Q gi|254780767|r 375 AEIVLQVL 382 (383) Q Consensus 375 A~~I~~~L 382 (383) .++|.+++ T Consensus 385 v~iL~~~~ 392 (403) T 3ot5_A 385 LAAIKSHF 392 (403) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999861 No 11 >3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate assisted catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Probab=99.49 E-value=2.1e-11 Score=93.79 Aligned_cols=337 Identities=14% Similarity=0.117 Sum_probs=179.8 Q ss_pred CCCEEEEEECC-----CC--HH-----HHHHHHHHHHHHHCCCCEEEEEECCHHHHHC------CCEEEECHHH--CCEE Q ss_conf 87459999768-----21--47-----8999999999973899839999717899947------8806504445--3110 Q gi|254780767|r 2 NSLKIAVIAGE-----IS--GD-----LLAGDLIKSLKEMVSYPINLVGVGGPSLQKE------GLVSLFDFSE--LSVI 61 (383) Q Consensus 2 ~~mki~i~aGE-----~S--GD-----~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~------G~~~~~~~~~--l~v~ 61 (383) ++|||.+++-. .+ || .|-.+|.++|.++ +.++.++...-..-... |++.+ .+.. .... T Consensus 19 ~~~ri~~vs~~~~P~~~~g~~d~GG~e~~v~~La~~L~~~-Gh~V~v~t~~~~~~~~~~~~~~~~v~i~-~i~~~~~~~~ 96 (438) T 3c48_A 19 SHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQ-GIEVDIYTRATRPSQGEIVRVAENLRVI-NIAAGPYEGL 96 (438) T ss_dssp CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHT-TCEEEEEEECCCGGGCSEEEEETTEEEE-EECCSCSSSC T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCEECCCCEEEE-EECCCCCCCC T ss_conf 9977999846636300059998679999999999999977-9969999547888774402226971899-8057862335 Q ss_pred EHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC---CCCCCCCC--CC---- Q ss_conf 1367466459999999999861001288868985117765799998663013463111100---22110036--63---- Q gi|254780767|r 62 GIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC---PSVWAWRE--GR---- 132 (383) Q Consensus 62 G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~---PqvWAWr~--~R---- 132 (383) ........+......+..... ....+||++..-+.. ....+..+++. .++|+++.+- +....|.. +. T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~Diih~~~~~--~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~~~~~~~~~ 172 (438) T 3c48_A 97 SKEELPTQLAAFTGGMLSFTR-REKVTYDLIHSHYWL--SGQVGWLLRDL-WRIPLIHTAHTLAAVKNSYRDDSDTPESE 172 (438) T ss_dssp CGGGGGGGHHHHHHHHHHHHH-HHTCCCSEEEEEHHH--HHHHHHHHHHH-HTCCEEEECSSCHHHHSCC----CCHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHCCCCEEEEECCCH--HHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCHHHH T ss_conf 477879999999999999999-707996199989843--78999999986-59988999256432233100013311478 Q ss_pred -----HHHHHHHHHHHCCCCCCCHHHHHCCCCC---CEEECCCCCCCC-C--CCCCCHHHHHHHCCCCCCCCEEEEEECC Q ss_conf -----5579999986401567742232002553---147638821122-1--0013558889761876556505998538 Q gi|254780767|r 133 -----ARKMCAYINQVISILPFEKEVMQRLGGP---PTTFVGHPLSSS-P--SILEVYSQRNKQRNTPSQWKKILLLPGS 201 (383) Q Consensus 133 -----~k~~~~~~d~~~~ifpFE~~~f~k~~~~---~~~fVGHPl~d~-~--~~~~~~~~~~~~~~~~~~~~~I~llPGS 201 (383) .+.+.+..|.+++.-....+.+.+..+. ++..+.+..-.. . .........+++.+++.+.. +.++.|+ T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~Gr 251 (438) T 3c48_A 173 ARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIPLHTK-VVAFVGR 251 (438) T ss_dssp HHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTTCCSSSE-EEEEESC T ss_pred HHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCCCCHHHHHHHHHCCCCCCCE-EEEEECC T ss_conf 999999999863888999039999998874067755389977986755416554056799999709998985-9999702 Q ss_pred CCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCC------HHHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHH Q ss_conf 74301230511189998764027351262016633------688999999604888505520----55203578876355 Q gi|254780767|r 202 RAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSS------QENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAA 271 (383) Q Consensus 202 R~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~a 271 (383) -.+ .+....+++++.++.++.|+.++.+..... .........+.......+... .++...++..||+. T Consensus 252 -l~~-~Kg~~~li~a~~~l~~~~~~~~l~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~ 329 (438) T 3c48_A 252 -LQP-FKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIV 329 (438) T ss_dssp -BSG-GGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEE T ss_pred -CCC-CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCC T ss_conf -542-346268889999987507654311476247754320111022221234655431000357377787766530444 Q ss_pred HCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCC Q ss_conf 2331-----15668887627530254057741000010246761023024407842612420548989999999998449 Q gi|254780767|r 272 MAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQD 346 (383) Q Consensus 272 i~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d 346 (383) +..| |++.+|++.+|+|. |+..++.+...+ .-...|+ ++ +.-+++.+++.+.++++| T Consensus 330 v~~s~~E~~~~~~~Eama~G~PV-I~s~~gg~~e~i----~~~~~G~--------l~-----~~~d~~~la~~i~~ll~d 391 (438) T 3c48_A 330 AVPSFNESFGLVAMEAQASGTPV-IAARVGGLPIAV----AEGETGL--------LV-----DGHSPHAWADALATLLDD 391 (438) T ss_dssp EECCSCCSSCHHHHHHHHTTCCE-EEESCTTHHHHS----CBTTTEE--------EE-----SSCCHHHHHHHHHHHHHC T ss_pred CCCCCCCCCHHHHHHHHHCCCEE-EEECCCCCHHHH----CCCCEEE--------EE-----CCCCHHHHHHHHHHHHCC T ss_conf 35632234137799998569729-995899717761----3797189--------97-----899999999999999869 Q ss_pred HHHHHHHHHHHHHHHHHHC Q ss_conf 8999999999999999838 Q gi|254780767|r 347 TLQRRAMLHGFENLWDRMN 365 (383) Q Consensus 347 ~~~r~~~~~~~~~~~~~Lg 365 (383) ++.++++.++..+..++.. T Consensus 392 ~~~~~~~~~~a~~~~~~fs 410 (438) T 3c48_A 392 DETRIRMGEDAVEHARTFS 410 (438) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999999699 No 12 >2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xmp_A* Probab=99.47 E-value=4.4e-11 Score=91.66 Aligned_cols=339 Identities=14% Similarity=0.119 Sum_probs=179.1 Q ss_pred CCCCEEEEEEC-CCCH--HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHH-----CC---EEEHHHHHHH Q ss_conf 98745999976-8214--789999999999738998399997178999478806504445-----31---1013674664 Q gi|254780767|r 1 MNSLKIAVIAG-EISG--DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSE-----LS---VIGIMQVVRH 69 (383) Q Consensus 1 m~~mki~i~aG-E~SG--D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~-----l~---v~G~~evl~~ 69 (383) |+.|||..+.. ...| -.....|++.+++. +.++++.-+-|+.= .|+.+. +. ...+.+-.+. T Consensus 38 l~~mkVlhvn~t~~gGGva~~~~~lv~~~~~~-G~~~~~~V~~~~~~-------~f~vtk~~hn~lqg~~~~~~~~~~~~ 109 (416) T 2x6q_A 38 LKGRSFVHVNSTSFGGGVAEILHSLVPLLRSI-GIEARWFVIEGPTE-------FFNVTKTFHNALQGNESLKLTEEMKE 109 (416) T ss_dssp TTTCEEEEEESCSSSSTHHHHHHHHHHHHHHT-TCEEEEEECCCCHH-------HHHHHHHHHHHHTTCCSCCCCHHHHH T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-------HHHHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 53998999967987775999999999999976-99569997079932-------77999988787528987677989999 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE-----CCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 5999999999986100128886898511776579999866301346311110-----02211003663557999998640 Q gi|254780767|r 70 LPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV-----CPSVWAWREGRARKMCAYINQVI 144 (383) Q Consensus 70 ~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv-----~PqvWAWr~~R~k~~~~~~d~~~ 144 (383) .+........+.+...++|+|+.=|... +.+...+++ +.|++|.. .|+-..|+- .+.+-+.+|.++ T Consensus 110 --~~~~~~~~~~~~~~~~~~DiVhiHd~~~--~~l~~~~~~---~~p~i~~~Hi~~~~~~~~~~~~--l~~~i~~~d~~I 180 (416) T 2x6q_A 110 --LYLNVNRENSKFIDLSSFDYVLVHDPQP--AALIEFYEK---KSPWLWRCHIDLSSPNREFWEF--LRRFVEKYDRYI 180 (416) T ss_dssp --HHHHHHHHHHHSSCGGGSSEEEEESSTT--GGGGGGSCC---CSCEEEECCSCCSSCCHHHHHH--HHHHHTTSSEEE T ss_pred --HHHHHHHHHHHHHHCCCCCEEEEECCCH--HHHHHHHHC---CCCEEEEECCCCCCCHHHHHHH--HHHHHHHCCEEE T ss_conf --9999999999871136999899978755--899999843---8969999747888743999999--999998589999 Q ss_pred CCCCCCHHHHHC-CCCCCEEECCCCC---CCCCC--CCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHH Q ss_conf 156774223200-2553147638821---12210--01355888976187655650599853874301230511189998 Q gi|254780767|r 145 SILPFEKEVMQR-LGGPPTTFVGHPL---SSSPS--ILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVA 218 (383) Q Consensus 145 ~ifpFE~~~f~k-~~~~~~~fVGHPl---~d~~~--~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~ 218 (383) +.. .+|.++ ...-++.++-|.+ .+... ........++++++++++++|+ +.| |-.+ .+....+++++. T Consensus 181 ~~~---~~~~~~~l~~~k~~vIpngID~~~~~n~~~~~~~~~~~~~~~~i~~~~~iil-~vG-r~~~-~Kg~~~li~a~~ 254 (416) T 2x6q_A 181 FHL---PEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIIT-QVS-RFDP-WKGIFDVIEIYR 254 (416) T ss_dssp ESS---GGGSCTTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEE-EEC-CCCT-TSCHHHHHHHHH T ss_pred EEC---HHHHHHHCCCCCEEEEECCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCEEEE-EEE-CCCH-HCCCHHHHHHHH T ss_conf 965---9999721880358999389584011256899999999999809498991899-980-4703-118738999999 Q ss_pred HHHHCCCCCEEEECCCCCH-----HHHHHHHHHHCCCCCE----EEE---ECCCCHHHHHHHHHHHCCC-----HHHHHH Q ss_conf 7640273512620166336-----8899999960488850----552---0552035788763552331-----156688 Q gi|254780767|r 219 SLVKRNPFFRFSLVTVSSQ-----ENLVRCIVSKWDISPE----III---DKEQKKQVFMTCNAAMAAS-----GTVILE 281 (383) Q Consensus 219 ~l~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~----i~~---~~~~~~~~l~~sd~ai~~S-----GTaTLE 281 (383) .+.+++|++++++...... ....+..+.+...... +.. ..++...+++.||+.+..| |.+.+| T Consensus 255 ~l~~~~p~~~l~ivG~~~~~~~~~~~~~~~~l~~l~~~~~i~~~v~~~~~~~~~~~~~~~~adi~v~pS~~E~~~~~~lE 334 (416) T 2x6q_A 255 KVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTE 334 (416) T ss_dssp HHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHH T ss_pred HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH T ss_conf 99986899679999527877806579999999999986698249998999989999999965223455555555427999 Q ss_pred HHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH-HH Q ss_conf 87627530254057741000010246761023024407842612420548989999999998449899999999999-99 Q gi|254780767|r 282 LALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFE-NL 360 (383) Q Consensus 282 ~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~-~~ 360 (383) ++.+|+|.| +...+.+...+. -...|+ ++ + +++.+++.+..+++|++.++++.++.. .+ T Consensus 335 Ama~G~PvI-~s~~gg~~e~i~----~~~~G~--------l~-----~--d~~~la~~I~~ll~d~~~~~~~~~~ar~~v 394 (416) T 2x6q_A 335 AMWKGKPVI-GRAVGGIKFQIV----DGETGF--------LV-----R--DANEAVEVVLYLLKHPEVSKEMGAKAKERV 394 (416) T ss_dssp HHHTTCCEE-EESCHHHHHHCC----BTTTEE--------EE-----S--SHHHHHHHHHHHHHCHHHHHHHHHHHHHHH T ss_pred HHHCCCCEE-EECCCCHHHHHC----CCCEEE--------EC-----C--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 998699899-926997188850----797489--------81-----9--999999999999779999999999999999 Q ss_pred HHHHCCCCCHHHHHHHHHHHHCC Q ss_conf 99838999989999999998619 Q gi|254780767|r 361 WDRMNTKKPAGHMAAEIVLQVLG 383 (383) Q Consensus 361 ~~~Lg~~~~a~~~AA~~I~~~Lg 383 (383) .+....+..+ +.-.+++.++.| T Consensus 395 ~~~fs~~~~~-~~~~~ly~~L~G 416 (416) T 2x6q_A 395 RKNFIITKHM-ERYLDILNSLGG 416 (416) T ss_dssp HHHTBHHHHH-HHHHHHHHTC-- T ss_pred HHHCCHHHHH-HHHHHHHHHCCC T ss_conf 9868999999-999999987769 No 13 >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Probab=99.43 E-value=6.9e-10 Score=83.76 Aligned_cols=341 Identities=14% Similarity=0.109 Sum_probs=172.5 Q ss_pred CCCEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECC--HHHHHCCCEEEECHHHCC-----EEEHH-----HHHH Q ss_conf 8745999976821478999-999999973899839999717--899947880650444531-----10136-----7466 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGG--PSLQKEGLVSLFDFSELS-----VIGIM-----QVVR 68 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG--~~m~~~G~~~~~~~~~l~-----v~G~~-----evl~ 68 (383) ++++|.+.+-=..||+..+ .|.++|.++ +.++.|.+-.. +..++.|++...-...+. ..+.. .... T Consensus 6 ~~~hi~~~~~p~~GH~~p~l~la~~L~~~-GH~V~~~t~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (430) T 2iyf_A 6 TPAHIAMFSIAAHGHVNPSLEVIRELVAR-GHRVTYAIPPVFADKVAATGPRPVLYHSTLPGPDADPEAWGSTLLDNVEP 84 (430) T ss_dssp --CEEEEECCSCHHHHGGGHHHHHHHHHT-TCEEEEEECGGGHHHHHTTSCEEEECCCCSCCTTSCGGGGCSSHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99889996787450799999999999978-89899997821677788669878871677874323513456678999999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC---------------- Q ss_conf 4599999999998610012888689851177657999986630134631111002211003663---------------- Q gi|254780767|r 69 HLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGR---------------- 132 (383) Q Consensus 69 ~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R---------------- 132 (383) .+....+...++.+.++..+||+||. |+..+...++. ++ .++|++.+. |..+.|..-. T Consensus 85 ~~~~~~~~l~~l~~~~~~~~pD~vi~-~~~~~~~~~~a--~~--~~iP~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (430) T 2iyf_A 85 FLNDAIQALPQLADAYADDIPDLVLH-DITSYPARVLA--RR--WGVPAVSLS-PNLVAWKGYEEEVAEPMWREPRQTER 158 (430) T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEE-ETTCHHHHHHH--HH--HTCCEEEEE-SSCCCCTTHHHHTHHHHHHHHHHSHH T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEE-CCCCHHHHHHH--HH--CCCCEEEEE-CCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 99999999999999986049839997-57302699999--98--199989995-56555432331112332235304566 Q ss_pred HH-HHHHHHHHH-CCCCCCCHHHHHCCCC-------------------CCEEECCCCCCCCCCCCCCHHHHHHHCCCCCC Q ss_conf 55-799999864-0156774223200255-------------------31476388211221001355888976187655 Q gi|254780767|r 133 AR-KMCAYINQV-ISILPFEKEVMQRLGG-------------------PPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQ 191 (383) Q Consensus 133 ~k-~~~~~~d~~-~~ifpFE~~~f~k~~~-------------------~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~ 191 (383) .. .+.++.+.+ -...+...+.|....+ ....|+|++..+.... ........+ T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 231 (430) T 2iyf_A 159 GRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGDRAEE-------GGWQRPAGA 231 (430) T ss_dssp HHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGGSCTTTEEECCCCC-----C-------CCCCCCTTC T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCC-------CCCCCCCCC T ss_conf 6678999999988726874067775137743886230126675557887522146666553211-------001111477 Q ss_pred CCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEE-EECCCCHHHHHHHHH Q ss_conf 6505998538743012305111899987640273512620166336889999996048885055-205520357887635 Q gi|254780767|r 192 WKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEII-IDKEQKKQVFMTCNA 270 (383) Q Consensus 192 ~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~l~~sd~ 270 (383) ++.|.+.-||... ..+-+++.+.......++..++........... ..+ ...++. ...-+...++..+++ T Consensus 232 ~~~i~v~~~s~~~----~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~---~~~--l~~~v~~~~~~~~~~~l~~~~~ 302 (430) T 2iyf_A 232 EKVVLVSLGSAFT----KQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAE---LGE--LPDNVEVHDWVPQLAILRQADL 302 (430) T ss_dssp SEEEEEECTTTCC-----CHHHHHHHHHHHTTCTTEEEEEECC---CGGG---GCS--CCTTEEEESSCCHHHHHTTCSE T ss_pred CCEEEEECCCCCC----CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH---HHC--CCCCEEEEECCCHHHHHCCCCE T ss_conf 8569995451023----788999999998873688289999468765101---202--8986899612776887503311 Q ss_pred HHCCCHH-HHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHH Q ss_conf 5233115-668887627530254057741000010246761023024407842612420548989999999998449899 Q gi|254780767|r 271 AMAASGT-VILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQ 349 (383) Q Consensus 271 ai~~SGT-aTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~ 349 (383) .++..|. .++|++.+|+|+|++-- ..=.......+.-.-+|+ .++ .+++|++.|++++.++|+|+++ T Consensus 303 ~i~hgG~~t~~EAl~~G~P~i~~P~-~~dQ~~na~~l~~~G~G~--------~l~---~~~~~~~~L~~al~~lL~d~~~ 370 (430) T 2iyf_A 303 FVTHAGAGGSQEGLATATPMIAVPQ-AVDQFGNADMLQGLGVAR--------KLA---TEEATADLLRETALALVDDPEV 370 (430) T ss_dssp EEECCCHHHHHHHHHTTCCEEECCC-SHHHHHHHHHHHHTTSEE--------ECC---CC-CCHHHHHHHHHHHHHCHHH T ss_pred EEECCCCCHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHCCCEE--------EEC---CCCCCHHHHHHHHHHHHCCHHH T ss_conf 4423553379999982999999447-254899999999879889--------906---2579999999999999759999 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC Q ss_conf 999999999999983899998999999999861 Q gi|254780767|r 350 RRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383) Q Consensus 350 r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383) |+++.+. .+.+.... ..++|+++|-+.+ T Consensus 371 r~~~~~~----~~~~~~~~-g~~~a~~~iE~~~ 398 (430) T 2iyf_A 371 ARRLRRI----QAEMAQEG-GTRRAADLIEAEL 398 (430) T ss_dssp HHHHHHH----HHHHHHHC-HHHHHHHHHHTTS T ss_pred HHHHHHH----HHHHHCCC-CCHHHHHHHHHHH T ss_conf 9999999----99987499-9799999999998 No 14 >3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Probab=99.40 E-value=2.7e-11 Score=93.06 Aligned_cols=264 Identities=15% Similarity=0.117 Sum_probs=146.5 Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC-----CCCCCCCCCCHHHHHHHHHHHCCCCCCC Q ss_conf 99999861001288868985117765799998663013463111100-----2211003663557999998640156774 Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC-----PSVWAWREGRARKMCAYINQVISILPFE 150 (383) Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~-----PqvWAWr~~R~k~~~~~~d~~~~ifpFE 150 (383) ....+.+.++..+||+++..-+..+.+ .+..+++. .++|+++.+- ...|.+..+......+..|.+.++-... T Consensus 74 ~~~~l~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~-~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 151 (394) T 3okp_A 74 TAHAMAEIIREREIDNVWFGAAAPLAL-MAGTAKQA-GASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYT 151 (394) T ss_dssp HHHHHHHHHHHTTCSEEEESSCTTGGG-GHHHHHHT-TCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHH T ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHH-HHHHHHHH-CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEECCHHH T ss_conf 999999999974998899447634789-99999981-8996999943343111004578999999986257887369999 Q ss_pred HHHHHCC--CCCCEEECCCCCCC-CC--CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCC Q ss_conf 2232002--55314763882112-21--0013558889761876556505998538743012305111899987640273 Q gi|254780767|r 151 KEVMQRL--GGPPTTFVGHPLSS-SP--SILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNP 225 (383) Q Consensus 151 ~~~f~k~--~~~~~~fVGHPl~d-~~--~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~ 225 (383) .+.+.+. ..-++.++-|.+-. .. .........+++.+++++.++| ++.| |-.+ .+....+++++..+.+++| T Consensus 152 ~~~~~~~~~~~~~i~vipngid~~~~~~~~~~~~~~~r~~~~~~~~~~~i-~~vG-r~~~-~Kg~~~li~a~~~l~~~~~ 228 (394) T 3okp_A 152 LRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTPVI-ACNS-RLVP-RKGQDSLIKAMPQVIAARP 228 (394) T ss_dssp HHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTCCEE-EEES-CSCG-GGCHHHHHHHHHHHHHHST T ss_pred HHHHHHHCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCEE-EEEE-ECCC-CCCCHHHHHHHHHHHHCCC T ss_conf 99999845998758997896064423888825579999981999888579-9953-0234-5573368999999742277 Q ss_pred CCEEEECCCCCHHHHHHHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHCCC------------HHHHHHHHHHCCCE Q ss_conf 5126201663368899999960488850552----0552035788763552331------------15668887627530 Q gi|254780767|r 226 FFRFSLVTVSSQENLVRCIVSKWDISPEIII----DKEQKKQVFMTCNAAMAAS------------GTVILELALCGIPV 289 (383) Q Consensus 226 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~l~~sd~ai~~S------------GTaTLE~al~g~P~ 289 (383) +.++++................. ...+.. ...+..+.++.||+.+..| |.+.+|++.+|+|. T Consensus 229 ~~~l~i~G~~~~~~~~~~~~~~~--~~~v~~~g~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~E~~~~~~lEAma~G~Pv 306 (394) T 3okp_A 229 DAQLLIVGSGRYESTLRRLATDV--SQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPV 306 (394) T ss_dssp TCEEEEECCCTTHHHHHHHTGGG--GGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCE T ss_pred CCCEEEECCCCHHHHHHHHHHHC--CCCEEECCCCCHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCEE T ss_conf 65315863772267898876512--4330115754623311334445415764202456767789759999999809969 Q ss_pred EEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHC Q ss_conf 2540577410000102467610230244078426124205489899999999984498999999999999-999838 Q gi|254780767|r 290 VSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LWDRMN 365 (383) Q Consensus 290 IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~~~Lg 365 (383) | +...+.+...+ .-. .|+ ++ +.-+++.+++.+.++++|++.++++.++..+ +.+... T Consensus 307 I-~s~~~g~~e~i----~~~-~g~--------l~-----~~~d~~~la~~i~~ll~d~~~~~~~~~~a~~~~~~~fs 364 (394) T 3okp_A 307 I-AGTSGGAPETV----TPA-TGL--------VV-----EGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWS 364 (394) T ss_dssp E-ECSSTTGGGGC----CTT-TEE--------EC-----CTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTB T ss_pred E-ECCCCCHHHHC----CCC-CEE--------EE-----CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC T ss_conf 9-87999739873----289-589--------97-----89999999999999977999999999999999998689 No 15 >1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Probab=99.37 E-value=5.9e-10 Score=84.23 Aligned_cols=340 Identities=14% Similarity=0.066 Sum_probs=170.0 Q ss_pred CEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEEE---CHHHCCE-----EEHHHHHHHHHH Q ss_conf 45999976821478999-99999997389983999971--7899947880650---4445311-----013674664599 Q gi|254780767|r 4 LKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLF---DFSELSV-----IGIMQVVRHLPQ 72 (383) Q Consensus 4 mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~~---~~~~l~v-----~G~~evl~~~~~ 72 (383) |||+++++-+.||++.. .|.++|+++ +.++.|.+-+ .+..++.|++..- +.....- ............ T Consensus 1 MrIl~~~~gt~Ghv~P~l~lA~~L~~r-Gh~V~~~t~~~~~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (416) T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKAL-GVQTRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAM 79 (416) T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHHTCCEEECSCCGGGCCCTTSCCCCHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 949998798667899999999999987-9989999585677789877986998688466512355311112789998999 Q ss_pred HHHH-HHHHHHHCCCCCCCEEEEECHHHHHHHH-HHHHHHHCCCCCCEEEEC-------------------CCCCCCC-- Q ss_conf 9999-9999861001288868985117765799-998663013463111100-------------------2211003-- Q gi|254780767|r 73 FIFR-INQTVELIVSSKPDVLLIVDNPDFTHRV-AKRVRKKMPNLPIINYVC-------------------PSVWAWR-- 129 (383) Q Consensus 73 ~~~~-~~~~~~~i~~~~Pd~vi~iD~pgFnl~l-ak~lkk~~~~ipvi~yv~-------------------PqvWAWr-- 129 (383) .... .+.+.+.++..+||++|.-|+..+-... |..+ ++|.++... |..|.+. T Consensus 80 ~~~~~~~~l~~~~~~~~~~~vv~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (416) T 1rrv_A 80 TVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKL-----GLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVL 154 (416) T ss_dssp HHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHH-----TCCEEEEESSGGGSCCSSSCCCBCSCCCTTCCCHHHH T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-----CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 99999999999996289809999484156999999981-----8985356677501014666533455556432110246 Q ss_pred ----CCCH-HHHHHHHHHH-------------------CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHH Q ss_conf ----6635-5799999864-------------------015677422320025531476388211221001355888976 Q gi|254780767|r 130 ----EGRA-RKMCAYINQV-------------------ISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQ 185 (383) Q Consensus 130 ----~~R~-k~~~~~~d~~-------------------~~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~ 185 (383) .++. ..+.+.++.. ...+.+...++......++.++|-+..+...... .+.... T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~ 232 (416) T 1rrv_A 155 WEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDERPLP--PELEAF 232 (416) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCSSCEECSCTTTSCCCSSCCCEECCCCCCCCCCCCC--HHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHCCCCCCCCCEEEECCCCCCCCCCCC--HHHHHH T ss_conf 788888899988899999999847875411333113542000210201566778985897887677665799--999998 Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEE-EECCCCHHH Q ss_conf 1876556505998538743012305111899987640273512620166336889999996048885055-205520357 Q gi|254780767|r 186 RNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEII-IDKEQKKQV 264 (383) Q Consensus 186 ~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~ 264 (383) ++..++.|.+--||....- .+.+.+.+.......+. .++.....+... . .....++. ...-...++ T Consensus 233 --l~~~~~~V~~~~gs~~~~~---~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~-----~--~~~~~~v~~~~~~p~~~l 299 (416) T 1rrv_A 233 --LAAGSPPVHIGFGSSSGRG---IADAAKVAVEAIRAQGR-RVILSRGWTELV-----L--PDDRDDCFAIDEVNFQAL 299 (416) T ss_dssp --HHSSSCCEEECCTTCCSHH---HHHHHHHHHHHHHHTTC-CEEEECTTTTCC-----C--SCCCTTEEEESSCCHHHH T ss_pred --HHHCCCCEEECCCCCCCCC---HHHHHHHHHHHHHHCCC-EEEEECCCCCCC-----C--CCCCCCEEEEEECCHHHH T ss_conf --8517982896467412378---99999999999985797-799953677542-----2--358897899731278999 Q ss_pred HHHHHHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHH Q ss_conf 8876355233115668-887627530254057741000010246761023024407842612420548989999999998 Q gi|254780767|r 265 FMTCNAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERL 343 (383) Q Consensus 265 l~~sd~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~l 343 (383) |..||+.|+-.|..|+ |++..|+|+|++--.. =.....+.+.-.-+|+ . +-.+++|++.|++.+.++ T Consensus 300 L~~~~~~IthgG~~s~~Eal~~GvP~v~iP~~~-DQ~~nA~~v~~~G~G~--------~---l~~~~~~~~~l~~ai~~l 367 (416) T 1rrv_A 300 FRRVAAVIHHGSAGTEHVATRAGVPQLVIPRNT-DQPYFAGRVAALGIGV--------A---HDGPTPTFESLSAALTTV 367 (416) T ss_dssp GGGSSEEEECCCHHHHHHHHHHTCCEEECCCSB-THHHHHHHHHHHTSEE--------E---CSSSCCCHHHHHHHHHHH T ss_pred HHHCCEEEEECCCHHHHHHHHCCCCEEECCCCC-HHHHHHHHHHHCCCEE--------E---CCCCCCCHHHHHHHHHHH T ss_conf 843779995088538999998099989736602-0899999999879889--------7---785789999999999998 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC Q ss_conf 4498999999999999999838999989999999998619 Q gi|254780767|r 344 SQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVLG 383 (383) Q Consensus 344 l~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~Lg 383 (383) |+ +++ .++++++.+.+..+ ....+++.|.+.++ T Consensus 368 L~-~~~----~~~A~~~~~~~~~~--g~~~~~~~i~~~~~ 400 (416) T 1rrv_A 368 LA-PET----RARAEAVAGMVLTD--GAAAAADLVLAAVG 400 (416) T ss_dssp TS-HHH----HHHHHHHTTTCCCC--HHHHHHHHHHHHHH T ss_pred HC-HHH----HHHHHHHHHHHHHC--CCCCHHHHHHHHHC T ss_conf 29-999----99999999999865--87418999999962 No 16 >2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Probab=99.35 E-value=1.2e-10 Score=88.81 Aligned_cols=343 Identities=12% Similarity=0.064 Sum_probs=181.0 Q ss_pred CEEEEEE---CCC-CHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 4599997---682-147899999999997389983999971789994788065044453110136746645999999999 Q gi|254780767|r 4 LKIAVIA---GEI-SGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 4 mki~i~a---GE~-SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) |||.++. ..- ....+.-+|+++|.++ +.++.++....+.-...+.+ ...+.+-... ...+....... T Consensus 1 m~i~~~~~~y~p~GG~e~~~~~la~~L~~~-Gh~V~v~t~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~ 71 (374) T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAAR-GHHVRVYTQSWEGDCPKAFE----LIQVPVKSHT----NHGRNAEYYAW 71 (374) T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHT-TCCEEEEESEECSCCCTTCE----EEECCCCCSS----HHHHHHHHHHH T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCEE----EEECCCCCCC----CCHHHHHHHHH T ss_conf 979999486799998899999999999977-99699996678777898628----9976764535----30235789999 Q ss_pred HHHHCCCCCCCEEEEECH-HHHHHH------HHHHHHHHCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHHHCCCCCCCH Q ss_conf 986100128886898511-776579------999866301346311110022110036-635579999986401567742 Q gi|254780767|r 80 TVELIVSSKPDVLLIVDN-PDFTHR------VAKRVRKKMPNLPIINYVCPSVWAWRE-GRARKMCAYINQVISILPFEK 151 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~iD~-pgFnl~------lak~lkk~~~~ipvi~yv~PqvWAWr~-~R~k~~~~~~d~~~~ifpFE~ 151 (383) +.+.+...+||+++..+. |++... ....+... .+..+-..+..+.+.. .|........+.+++....-. T Consensus 72 ~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 148 (374) T 2iw1_A 72 VQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQE---KGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQI 148 (374) T ss_dssp HHHHHHHSCCSEEEESSCCTTCSEEECCSCCHHHHHHHH---CCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHHHH T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEE---CCCCCCCCHHHCCHHHHHHHHHHHCCCCEEEEECHHHH T ss_conf 999998558868985155403789886403442168863---36430004001105678999965424887999689999 Q ss_pred HHHHCCCC---CCEEECCCCCCCCC----CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCC Q ss_conf 23200255---31476388211221----001355888976187655650599853874301230511189998764027 Q gi|254780767|r 152 EVMQRLGG---PPTTFVGHPLSSSP----SILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRN 224 (383) Q Consensus 152 ~~f~k~~~---~~~~fVGHPl~d~~----~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~ 224 (383) .-+.+..+ -+++.+.|++-... .....+...+...+++++.+ +.++.|. -.+ .+....+++++.++.++. T Consensus 149 ~~~~~~~~~~~~~i~vi~~gv~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~~g~-~~~-~Kg~~~li~a~~~l~~~~ 225 (374) T 2iw1_A 149 ADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQN-LLLQVGS-DFG-RKGVDRSIEALASLPESL 225 (374) T ss_dssp HHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCE-EEEEECS-CTT-TTTHHHHHHHHHTSCHHH T ss_pred HHHHHHHCCCHHHEEEECCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCE-EEEECCC-CCC-CCHHHHHHHHHHHHHHCC T ss_conf 9999983988678999899717766177678067899999719997881-9998156-654-000799999999864403 Q ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCC Q ss_conf 35126201663368899999960488850552--0552035788763552331-----1566888762753025405774 Q gi|254780767|r 225 PFFRFSLVTVSSQENLVRCIVSKWDISPEIII--DKEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEW 297 (383) Q Consensus 225 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~ 297 (383) ++..+.+.......+.++....+.+....+.. ..++..+.++.||+.+..| |.+.+|++.+|+|.|+ ...+. T Consensus 226 ~~~~~~~ig~~~~~~~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~pS~~E~~~~~~~EAma~G~PvIa-s~~~g 304 (374) T 2iw1_A 226 RHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLT-TAVCG 304 (374) T ss_dssp HHTEEEEEESSSCCHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEE-ETTST T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCEEE-CCCCC T ss_conf 54279885277533222222223455322233577103266665204430355233333069999974986999-07997 Q ss_pred CEEEEEECCCCCCEEEEHHHCCCC---CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 100001024676102302440784---26124205489899999999984498999999999999999838999989999 Q gi|254780767|r 298 IVNFFIFYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMA 374 (383) Q Consensus 298 lt~~i~~lik~~~i~LpNii~~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~A 374 (383) ... ++-+.+ +++ +.-+++.+++++.++++|++.+++|.++.++..+.... ....+.+ T Consensus 305 ~~e---------------~v~~~~~G~l~~----~~~d~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~~~-~~~~~~~ 364 (374) T 2iw1_A 305 YAH---------------YIADANCGTVIA----EPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDL-YSLPEKA 364 (374) T ss_dssp TTH---------------HHHHHTCEEEEC----SSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCC-SCHHHHH T ss_pred HHH---------------HHCCCCCEEEEC----CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCH-HHHHHHH T ss_conf 389---------------852798469986----99999999999999977999999999999999997088-9999999 Q ss_pred HHHHHHHC Q ss_conf 99999861 Q gi|254780767|r 375 AEIVLQVL 382 (383) Q Consensus 375 A~~I~~~L 382 (383) ++++...| T Consensus 365 ~~i~~~~~ 372 (374) T 2iw1_A 365 ADIITGGL 372 (374) T ss_dssp HHHHHCC- T ss_pred HHHHHHHC T ss_conf 99998641 No 17 >2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Probab=99.33 E-value=2.8e-09 Score=79.74 Aligned_cols=336 Identities=11% Similarity=0.015 Sum_probs=159.9 Q ss_pred CEEEEEECCC-----CHHH--HHHHHHHHHHHHCCCCEEEEEECCHHHHH-------------------------CCCEE Q ss_conf 4599997682-----1478--99999999997389983999971789994-------------------------78806 Q gi|254780767|r 4 LKIAVIAGEI-----SGDL--LAGDLIKSLKEMVSYPINLVGVGGPSLQK-------------------------EGLVS 51 (383) Q Consensus 4 mki~i~aGE~-----SGD~--~~a~li~~Lk~~~~~~~~~~giGG~~m~~-------------------------~G~~~ 51 (383) |||+.++.|. +|-+ ....|.++|.++ +.++.+.-=+-+.... .|++. T Consensus 1 M~I~~v~~e~~p~~~~GGl~~~v~~L~~aL~~~-Gh~V~VitP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 79 (485) T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIAD-GVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGI 79 (485) T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHT-TCEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEE T ss_pred CEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHCCCCCEEEEEECCCCEEEEEEEEEECCCEE T ss_conf 979999772256235466999999999999976-9979999689857324467756878861477278899999899569 Q ss_pred EE------------CHHHCCEEEHHHHHHHHHHHHHHHHH-HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 50------------44453110136746645999999999-986100128886898511776579999866301346311 Q gi|254780767|r 52 LF------------DFSELSVIGIMQVVRHLPQFIFRINQ-TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 52 ~~------------~~~~l~v~G~~evl~~~~~~~~~~~~-~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+ ++.+-+.-++...+.....+...... ....+...+||++-+=|..+.-... .+..+..++|++ T Consensus 80 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiiH~h~~~~~~~~~--~~~~~~~~i~~v 157 (485) T 2qzs_A 80 YLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPA--YLAARGRPAKSV 157 (485) T ss_dssp EEEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTHHH--HHHHTTCSSEEE T ss_pred EEECCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH--HHHHHCCCCCEE T ss_conf 994585662378876677545553117888889999999999974557998399988801767788--887625899889 Q ss_pred EEECCCC----CCC-------------C------C---CCHHHHHHHHHHHCCCCCCCHHHHHC--------------CC Q ss_conf 1100221----100-------------3------6---63557999998640156774223200--------------25 Q gi|254780767|r 119 NYVCPSV----WAW-------------R------E---GRARKMCAYINQVISILPFEKEVMQR--------------LG 158 (383) Q Consensus 119 ~yv~Pqv----WAW-------------r------~---~R~k~~~~~~d~~~~ifpFE~~~f~k--------------~~ 158 (383) +-+---. |.+ + . +-.+...++.|.+.++-+...+.... .. T Consensus 158 ~t~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (485) T 2qzs_A 158 FTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHR 237 (485) T ss_dssp EEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHH T ss_pred EEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCCHHHHHHCCCC T ss_conf 98136433664564342110333100465553211155699999985061220378899999975023571655421255 Q ss_pred CCCEEECCCCCC-------------------CCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHH Q ss_conf 531476388211-------------------2210013558889761876556505998538743012305111899987 Q gi|254780767|r 159 GPPTTFVGHPLS-------------------SSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVAS 219 (383) Q Consensus 159 ~~~~~fVGHPl~-------------------d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~ 219 (383) .-+...+=++.. ................+.+.+.....++--+|-...|. ...+++++.+ T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~grl~~~KG-~~~li~a~~~ 316 (485) T 2qzs_A 238 EGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKG-LDLVLEALPG 316 (485) T ss_dssp TTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGC-HHHHHHHHHH T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC-CHHHHHHHHH T ss_conf 686566048866432476556443333431135665567888877514777899529999334432478-3679999999 Q ss_pred HHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEE Q ss_conf 6402735126201663368899999960488850552--0552035788763552331-----15668887627530254 Q gi|254780767|r 220 LVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIII--DKEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSI 292 (383) Q Consensus 220 l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~ 292 (383) +.+.++++.+.....+..+...............+.. .......+++++|+.+..| |.+-||++.+|+| ||+ T Consensus 317 l~~~~~~l~l~g~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dv~v~pS~~E~fgl~~lEAma~G~P-VVa 395 (485) T 2qzs_A 317 LLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL-PLV 395 (485) T ss_dssp HHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCE-EEE T ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC-EEE T ss_conf 8705962999816880677899999975688637860566677679987511156985345787699999987998-999 Q ss_pred CCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHH Q ss_conf 057741000010246761023024407842612420548989999999998449899999 Q gi|254780767|r 293 YKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRA 352 (383) Q Consensus 293 Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~ 352 (383) .+++.+...+..- . ......... -=++-+..+++.+++++.++|++.+.++. T Consensus 396 s~~gG~~E~i~~g---~----~~~~~~~~~-~G~lv~~~d~~~la~ai~~~L~~~~~~~~ 447 (485) T 2qzs_A 396 RRTGGLADTVSDC---S----LENLADGVA-SGFVFEDSNAWSLLRAIRRAFVLWSRPSL 447 (485) T ss_dssp ESSHHHHHHCCBC---C----HHHHHTTCC-CBEEECSSSHHHHHHHHHHHHHHHTSHHH T ss_pred ECCCCCCCEEECC---C----CCCCCCCCC-CEEEECCCCHHHHHHHHHHHHHCCCCHHH T ss_conf 1899976265158---6----443456777-46996899999999999999819257999 No 18 >3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthase, two rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* Probab=99.30 E-value=1e-09 Score=82.64 Aligned_cols=335 Identities=13% Similarity=0.052 Sum_probs=172.3 Q ss_pred CCCEEEEEECC----CCHH--HHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEE-------------ECHHHCC--- Q ss_conf 87459999768----2147--899999999997389983999971789994788065-------------0444531--- Q gi|254780767|r 2 NSLKIAVIAGE----ISGD--LLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSL-------------FDFSELS--- 59 (383) Q Consensus 2 ~~mki~i~aGE----~SGD--~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~-------------~~~~~l~--- 59 (383) +.|||.+++=+ .||- .+...|.++|.++ +.++++.--+.+..+.+....+ ....... T Consensus 1 ~~MkIl~~~~~~~P~~~GG~~~~~~~La~~L~~~-Gh~V~vvtp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 79 (439) T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASL-GHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYR 79 (439) T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHT-TCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEE T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHCCCCEECCCCCCEEEEEECCCCCEEEE T ss_conf 9709999888679856787999999999999976-998999915898755444255012154431012344158807997 Q ss_pred ------------EEEHHHHHHHHHHHHHHHHHHHHHC--CCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC--- Q ss_conf ------------1013674664599999999998610--01288868985117765799998663013463111100--- Q gi|254780767|r 60 ------------VIGIMQVVRHLPQFIFRINQTVELI--VSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC--- 122 (383) Q Consensus 60 ------------v~G~~evl~~~~~~~~~~~~~~~~i--~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~--- 122 (383) ..+....+.+...+.+........+ ....||++..-|.+. .-++..+++. .++|+++.+- T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiIh~~~~~~--~~~~~~~~~~-~~~~~v~~~h~~~ 156 (439) T 3fro_A 80 IGGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHT--VFAGALIKKY-FKIPAVFTIHRLN 156 (439) T ss_dssp EESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGG--HHHHHHHHHH-HCCCEEEEESCCC T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHH--HHHHHHHHHH-CCCCEEEEECCCC T ss_conf 275534542236765025899999889999999999997279984899888427--8999999850-4998799964664 Q ss_pred CCCCCCC---C---------CC---HHHHHHHHHHHCCCCCCCH----HHHHCCCCCCEEECCCCCCCCC--------CC Q ss_conf 2211003---6---------63---5579999986401567742----2320025531476388211221--------00 Q gi|254780767|r 123 PSVWAWR---E---------GR---ARKMCAYINQVISILPFEK----EVMQRLGGPPTTFVGHPLSSSP--------SI 175 (383) Q Consensus 123 PqvWAWr---~---------~R---~k~~~~~~d~~~~ifpFE~----~~f~k~~~~~~~fVGHPl~d~~--------~~ 175 (383) ++-+.|. . .+ -+...+..|.+.+..+... .+|.... -++..+-|++-... .. T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~i~vi~ng~d~~~~~~~~~~~~~ 235 (439) T 3fro_A 157 KSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFE-GKITYVFNGIDCSFWNESYLTGSR 235 (439) T ss_dssp CCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGT-TSEEECCCCCCTTTSCGGGSCSCH T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHCCCC-CCEEEECCCCCCHHHCCCCCCCCH T ss_conf 4567520122124103456778899998886468899888899999987637871-148997488660120200023205 Q ss_pred CCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHH--CCCCCEEEECCCCCH--HHHHHHHHHHCCCC Q ss_conf 13558889761876556505998538743012305111899987640--273512620166336--88999999604888 Q gi|254780767|r 176 LEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVK--RNPFFRFSLVTVSSQ--ENLVRCIVSKWDIS 251 (383) Q Consensus 176 ~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~--~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~ 251 (383) .......+++++++++ . ..++-|+. .+.++.+..+++++..+.. ..+++++++...... +...+......+ + T Consensus 236 ~~~~~~~~~~~~~~~~-~-~il~~g~l-~~~~Kg~~~li~a~~~~~~~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~-~ 311 (439) T 3fro_A 236 DERKKSLLSKFGMDEG-V-TFMFIGRF-DRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-N 311 (439) T ss_dssp HHHHHHHHHHHTCCSC-E-EEEEECCS-SCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-T T ss_pred HHHHHHHHHHHCCCCC-C-EEEEECCC-CCCCCCHHHEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC-C T ss_conf 6779999998468878-6-69985232-34665533212000223222357773799953797301467877765045-3 Q ss_pred CEEEE---ECCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCC Q ss_conf 50552---0552035788763552331-----156688876275302540577410000102467610230244078426 Q gi|254780767|r 252 PEIII---DKEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLV 323 (383) Q Consensus 252 ~~i~~---~~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~iv 323 (383) ..+.. ..++....++.||+.+.+| |.+.+|++.+|+| ||+..++.+... +-++.- T Consensus 312 ~~~~~~~~~~~~~~~~~~~adv~~~~s~~E~~~~~~~Eama~G~P-vI~~~~g~~~ei---------------i~~~~G- 374 (439) T 3fro_A 312 VKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAI-PIASAVGGLRDI---------------ITNETG- 374 (439) T ss_dssp EEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCE-EEEESSTHHHHH---------------CCTTTC- T ss_pred EEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCC-EEEECCCCCHHE---------------EECCCE- T ss_conf 289973266788999876321355555232231799999987998-999379982650---------------888948- Q ss_pred CHHHCCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHH Q ss_conf 1242054898999999999844-9899999999999999983 Q gi|254780767|r 324 PEYFNSMIRSEALVRWIERLSQ-DTLQRRAMLHGFENLWDRM 364 (383) Q Consensus 324 PEliQ~~~~~~~i~~~~~~ll~-d~~~r~~~~~~~~~~~~~L 364 (383) -++ +.-+++.+++.+.++++ |++.++++.++..+..++. T Consensus 375 -~lv-~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 414 (439) T 3fro_A 375 -ILV-KAGDPGELANAILKALELSRSDLSKFRENCKKRAMSF 414 (439) T ss_dssp -EEE-CTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTS T ss_pred -EEE-CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC T ss_conf -998-7999999999999998379999999999999999969 No 19 >1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 Probab=99.27 E-value=4.7e-11 Score=91.47 Aligned_cols=323 Identities=14% Similarity=0.051 Sum_probs=167.8 Q ss_pred CEEEEEECCCCHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHC-CEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 459999768214789-9999999997389983999971789994788065044453-11013674664599999999998 Q gi|254780767|r 4 LKIAVIAGEISGDLL-AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSEL-SVIGIMQVVRHLPQFIFRINQTV 81 (383) Q Consensus 4 mki~i~aGE~SGD~~-~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l-~v~G~~evl~~~~~~~~~~~~~~ 81 (383) |||+|+....=||.. ...++++||+..| +.++.-++++..++. +.+...+ .++.+ ...+.........++. T Consensus 1 MrILii~~~~iGD~i~~~p~i~~Lk~~~P-~~~I~~l~~~~~~~l----~~~~p~id~v~~~--~~~~~~~~~~~~~~~~ 73 (348) T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYP-QAIIDVMAPAWCRPL----LSRMPEVNEAIPM--PLGHGALEIGERRKLG 73 (348) T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHST-TCEEEEEECGGGHHH----HTTCTTEEEEEEC---------CHHHHHHHH T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECHHHHHH----HHCCCCCCEEEEE--CCCCCCCCHHHHHHHH T ss_conf 96999918960999999999999998789-998999988508999----8519986789995--7853301378999999 Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-----CCCCHHHHHHHHHHHCCCCCCCHHHHHC Q ss_conf 61001288868985117765799998663013463111100221100-----3663557999998640156774223200 Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAW-----REGRARKMCAYINQVISILPFEKEVMQR 156 (383) Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAW-----r~~R~k~~~~~~d~~~~ifpFE~~~f~k 156 (383) +.++..++|.++..+..-.+.-++... +++..+......+.| +..+........+.-+.+... ..... T Consensus 74 ~~l~~~~~D~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 146 (348) T 1psw_A 74 HSLREKRYDRAYVLPNSFKSALVPLFA-----GIPHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYIALAYD-KGIMR- 146 (348) T ss_dssp HHTTTTTCSEEEECSCCSGGGHHHHHT-----TCSEEEEECTTTCTTTCTEEECCCTTTCCSHHHHHHHTTSC-GGGCS- T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHH-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCC- T ss_conf 997541687764235430136778764-----16511132312232334443334433331478888989876-40222- Q ss_pred CCCCCEEECCCCCCCC--CCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCC--HHHHHHHHHHCCCCCEEEEC Q ss_conf 2553147638821122--1001355888976187655650599853874301230511--18999876402735126201 Q gi|254780767|r 157 LGGPPTTFVGHPLSSS--PSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPF--FESAVASLVKRNPFFRFSLV 232 (383) Q Consensus 157 ~~~~~~~fVGHPl~d~--~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~--~l~~~~~l~~~~~~~~~~i~ 232 (383) ....+..|.... ..............+...++++|++.||++...- +.+|. +.+.++.+.++ +.++++. T Consensus 147 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-k~wp~~~~~~l~~~l~~~--~~~ivl~ 219 (348) T 1psw_A 147 ----TAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPA-KRWPHYHYAELAKQLIDE--GYQVVLF 219 (348) T ss_dssp ----SGGGSCSSCCCCCCCCCHHHHHHHHHHTTCCSSSCEEEEECCCTTCGG-GSCCHHHHHHHHHHHHHT--TCEEEEC T ss_pred ----CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHC-CCCCHHHHHHHHHHHHHC--CCCEECC T ss_conf ----222455433576667898999999864124667874884587552113-689689899999998753--9831205 Q ss_pred CCCCHHHHHHHHHHHCCCC--CEEEE-----ECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEE--E Q ss_conf 6633688999999604888--50552-----0552035788763552331156688876275302540577410000--1 Q gi|254780767|r 233 TVSSQENLVRCIVSKWDIS--PEIII-----DKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFF--I 303 (383) Q Consensus 233 ~~~~~~~~~~~~~~~~~~~--~~i~~-----~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i--~ 303 (383) ..++..+............ ..+.. .-.+.-.++..||+.|+..+...=-++++|+|+|++|..+....+. . T Consensus 220 ~~~~e~~~~~~~~~~~~~~~~~~~~~l~g~~sl~el~~li~~a~l~I~~Dtg~~HlAaalg~p~v~lfg~~~~~~~~P~~ 299 (348) T 1psw_A 220 GSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPPLS 299 (348) T ss_dssp CCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESSHHHHHHHHTTCCEEEEESSSCTTSSCCCC T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHCCCC T ss_conf 78467999999999853201454334457655899999995163675279759999998099989997899861408789 Q ss_pred ECCCCCCEEEEHHHCCCC----CCCHHHCCCCCHHHHHHHHHHHHCCHH Q ss_conf 024676102302440784----261242054898999999999844989 Q gi|254780767|r 304 FYIKTWTCALPNLIVDYP----LVPEYFNSMIRSEALVRWIERLSQDTL 348 (383) Q Consensus 304 ~lik~~~i~LpNii~~~~----ivPEliQ~~~~~~~i~~~~~~ll~d~~ 348 (383) ...++-+..++.-=..+. -..+.++ +.+|+.+.+++.++|.+.+ T Consensus 300 ~~~~vi~~~~~c~~c~~~~~~~~~~~c~~-~I~~~~V~~~l~~~L~~~~ 347 (348) T 1psw_A 300 HKARVIRLITGYHKVRKGDAAEGYHQSLI-DITPQRVLEELNALLLQEE 347 (348) T ss_dssp TTEEEEESSCC----------CCCCHHHH-TSCHHHHHHHHHHHHHHHH T ss_pred CCEEEEECCCCCCCCCCCCCCCCCHHHHC-CCCHHHHHHHHHHHHCCCC T ss_conf 98699945898776668888887546573-8999999999999853388 No 20 >2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina- biosynthesis; 1.88A {Streptomyces fradiae} Probab=99.26 E-value=3.4e-10 Score=85.82 Aligned_cols=335 Identities=12% Similarity=0.124 Sum_probs=158.6 Q ss_pred CEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECC--HHHHHCCCEEEECHHHCCE----------------EEHH Q ss_conf 45999976821478999-999999973899839999717--8999478806504445311----------------0136 Q gi|254780767|r 4 LKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGG--PSLQKEGLVSLFDFSELSV----------------IGIM 64 (383) Q Consensus 4 mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG--~~m~~~G~~~~~~~~~l~v----------------~G~~ 64 (383) |||+++++-..||+... .|.++|+++ +.++.+.+-++ +..++.|++... ...... .... T Consensus 1 Mrilf~~~~~~GH~~~~l~LA~aL~~~-GH~V~v~t~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (384) T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNA-GHQVVMAANQDMGPVVTGVGLPAVA-TTDLPIRHFITTDREGRPEAIPSDPV 78 (384) T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHTTCCEEE-SCSSCHHHHHHBCTTSCBCCCCCSHH T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHCCCEEEE-CCCCHHHHHHCCCCCCCCCCCCHHHH T ss_conf 949998899661899999999999988-9989999485267679866985784-48740555402333455322311268 Q ss_pred HHHHHHHHH-----HHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC---HHHH Q ss_conf 746645999-----99999998610012888689851177657999986630134631111002211003663---5579 Q gi|254780767|r 65 QVVRHLPQF-----IFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGR---ARKM 136 (383) Q Consensus 65 evl~~~~~~-----~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R---~k~~ 136 (383) ......... ......+.......+||+++.-.+...-...+..+ ++|...... ..+.+...+ ...+ T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~a~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (384) T 2p6p_A 79 AQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHL-----GVPHARQTW-DAVDADGIHPGADAEL 152 (384) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHH-----TCCEEEECC-SSCCCTTTHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH-----CCCEEEEEC-CCCCCHHHCCCHHHHH T ss_conf 9999999999999999999999998651996899577550899999994-----998387512-4566132110237888 Q ss_pred HHHHHHH-CCCCCCCHHHH----------HCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCC Q ss_conf 9999864-01567742232----------002553147638821122100135588897618765565059985387430 Q gi|254780767|r 137 CAYINQV-ISILPFEKEVM----------QRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQE 205 (383) Q Consensus 137 ~~~~d~~-~~ifpFE~~~f----------~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~E 205 (383) ....... +.-++.....+ ....+....+++.. .........+..++.+.+.+..||.... T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~v~~G~~~~~ 223 (384) T 2p6p_A 153 RPELSELGLERLPAPDLFIDICPPSLRPANAAPARMMRHVATS---------RQCPLEPWMYTRDTRQRVLVTSGSRVAK 223 (384) T ss_dssp HHHHHHTTCSSCCCCSEEEECSCGGGSCTTSCCCEECCCCCCC---------CCCBCCHHHHCCCSSCEEEEECSSSSSC T ss_pred HHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCHHHHCCCCCCEEEEECCCHHHH T ss_conf 8887541432245652587247600035645666663425776---------6565822230479996799988943530 Q ss_pred H--HHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHH-HHH Q ss_conf 1--2305111899987640273512620166336889999996048885055205520357887635523311566-888 Q gi|254780767|r 206 I--YKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVI-LEL 282 (383) Q Consensus 206 I--~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaT-LE~ 282 (383) . ......+......+ ... ...+.......... ..... .. .+.+..-+....+..+|+.++.+|..| +|+ T Consensus 224 ~~~~~~~~~l~~~~~~~-~~~-~~~~~~~~~~~~~~---~~~~~-~~--~~~~~~~p~~~~l~~ad~~v~~gg~~t~~Ea 295 (384) T 2p6p_A 224 ESYDRNFDFLRGLAKDL-VRW-DVELIVAAPDTVAE---ALRAE-VP--QARVGWTPLDVVAPTCDLLVHHAGGVSTLTG 295 (384) T ss_dssp CSSCCCCTTHHHHHHHH-HTT-TCEEEEECCHHHHH---HHHHH-CT--TSEEECCCHHHHGGGCSEEEECSCTTHHHHH T ss_pred HHHHHHHHHHHHHHHHH-HHC-CEEEEEEECCCCCC---CCCCC-CC--CEEEEECCCHHCCCCEEEEEECCCCCHHHHH T ss_conf 00067999999999762-012-21346873574222---33567-88--2599724820011423289953776289999 Q ss_pred HHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 76275302540577410000102467610230244078426124205489899999999984498999999999999999 Q gi|254780767|r 283 ALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWD 362 (383) Q Consensus 283 al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~ 362 (383) +.+|+|+|++-- ..-.......+.-.-.|+ ++| .+++|++.|+.++.++|+|+++|++.. ++.+ T Consensus 296 l~~GvP~v~~P~-~~dQ~~~a~~l~~~G~G~--------~l~---~~~~~~~~la~ai~~lL~dp~~r~~a~----~~~~ 359 (384) T 2p6p_A 296 LSAGVPQLLIPK-GSVLEAPARRVADYGAAI--------ALL---PGEDSTEAIADSCQELQAKDTYARRAQ----DLSR 359 (384) T ss_dssp HHTTCCEEECCC-SHHHHHHHHHHHHHTSEE--------ECC---TTCCCHHHHHHHHHHHHHCHHHHHHHH----HHHH T ss_pred HHCCCCEEEECC-CCCHHHHHHHHHHCCCEE--------EEC---CCCCCHHHHHHHHHHHHCCHHHHHHHH----HHHH T ss_conf 980999899747-442799999999879989--------916---146999999999999977999999999----9999 Q ss_pred HHCCCCCHHHHHHHHHHH Q ss_conf 838999989999999998 Q gi|254780767|r 363 RMNTKKPAGHMAAEIVLQ 380 (383) Q Consensus 363 ~Lg~~~~a~~~AA~~I~~ 380 (383) ++....++.+.+ +.+.+ T Consensus 360 ~~~~~~~~~~~~-~~le~ 376 (384) T 2p6p_A 360 EISGMPLPATVV-TALEQ 376 (384) T ss_dssp HHHTSCCHHHHH-HHHHH T ss_pred HHHCCCCHHHHH-HHHHH T ss_conf 983599999999-99999 No 21 >1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Probab=99.22 E-value=9.5e-09 Score=76.24 Aligned_cols=164 Identities=12% Similarity=0.010 Sum_probs=93.0 Q ss_pred HHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEE--EECC Q ss_conf 89761876556505998538743012305111899987640273512620166336889999996048885055--2055 Q gi|254780767|r 182 RNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEII--IDKE 259 (383) Q Consensus 182 ~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~--~~~~ 259 (383) ...+.+..+.+..+.++.| |-.+.|. ...+++++..+.+.++++.++.......................+. ...+ T Consensus 280 ~~~~~~~~~~~~~~il~~g-rl~~~Kg-~~~l~~a~~~~~~~~~~l~l~g~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 357 (485) T 1rzu_A 280 VAEHFRIDDDGSPLFCVIS-RLTWQKG-IDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEP 357 (485) T ss_dssp HHHHHTCCCSSSCEEEEES-CBSTTTT-HHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHH T ss_pred HHHHCCCCCCCCEEEEEEC-CEECCCC-CHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCHH T ss_conf 7653022568970899974-1523678-6689999987312475299982687357899999997568827885475716 Q ss_pred CCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHH Q ss_conf 2035788763552331-----15668887627530254057741000010246761023024407842612420548989 Q gi|254780767|r 260 QKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSE 334 (383) Q Consensus 260 ~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~ 334 (383) +....++.||+.+..| |.+.+|++.+|+| ||+.+++.+...+.-- . ...+......= ++-+.-+++ T Consensus 358 ~~~~~~~~aDv~v~pS~~E~fgl~~lEAma~G~P-vIas~~gg~~E~I~dg---~----~~~~~~~~~~G-~lv~~~d~~ 428 (485) T 1rzu_A 358 LSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCI-PVVARTGGLADTVIDA---N----HAALASKAATG-VQFSPVTLD 428 (485) T ss_dssp HHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCE-EEEESSHHHHHHCCBC---C----HHHHHTTCCCB-EEESSCSHH T ss_pred HHHHHHHHCCCCCCCCCHHCCCHHHHHHHHCCCC-EEECCCCCCCCEEECC---C----CCCCCCCCCCE-EEECCCCHH T ss_conf 6589986272435882141157899999986998-9994799864045358---7----54224578734-997899999 Q ss_pred HHHHHHHHHHC---CHHHHHHHHHH Q ss_conf 99999999844---98999999999 Q gi|254780767|r 335 ALVRWIERLSQ---DTLQRRAMLHG 356 (383) Q Consensus 335 ~i~~~~~~ll~---d~~~r~~~~~~ 356 (383) .+++++.++++ |++.+.++..+ T Consensus 429 ~la~~i~~~l~~~~~~~~~~~~~~~ 453 (485) T 1rzu_A 429 GLKQAIRRTVRYYHDPKLWTQMQKL 453 (485) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9999999998371899999999999 No 22 >3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A* Probab=99.22 E-value=1.4e-08 Score=75.22 Aligned_cols=333 Identities=12% Similarity=0.035 Sum_probs=151.5 Q ss_pred CEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEEE---CHHH------CCEEEHHHHHHHHH Q ss_conf 45999976821478999-99999997389983999971--7899947880650---4445------31101367466459 Q gi|254780767|r 4 LKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLF---DFSE------LSVIGIMQVVRHLP 71 (383) Q Consensus 4 mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~~---~~~~------l~v~G~~evl~~~~ 71 (383) |||++.+|.+-||++.. .|.++|+++ +.++.|.+=+ -+..++.|++..- +... ....++.+.+..+ T Consensus 1 m~i~~~~~Gt~G~v~P~lalA~~L~~r-Gh~V~~~t~~~~~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (404) T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLREL-GADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEV- 78 (404) T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHT-TCCEEEEECGGGHHHHHHTTCCEEECSSCSSGGGSCTTCCCTTCGGGHHHH- T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHCCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHH- T ss_conf 969999176824899999999999987-997999978017778987798699878258766028777779999999999- Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECHH--HHHHHHHHHHHHHCCCCCCEEEEC-------CCCCCCCCCCHHHHHHHHHH Q ss_conf 999999999861001288868985117--765799998663013463111100-------22110036635579999986 Q gi|254780767|r 72 QFIFRINQTVELIVSSKPDVLLIVDNP--DFTHRVAKRVRKKMPNLPIINYVC-------PSVWAWREGRARKMCAYINQ 142 (383) Q Consensus 72 ~~~~~~~~~~~~i~~~~Pd~vi~iD~p--gFnl~lak~lkk~~~~ipvi~yv~-------PqvWAWr~~R~k~~~~~~d~ 142 (383) +...++.+... ..+||+||.-... .+....+... ..++.++... +..+.+.........+.... T Consensus 79 -~~~~~~~l~~~--~~~~D~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (404) T 3h4t_A 79 -VAEWFDKVPAA--IEGCDAVVTTGLLPAAVAVRSMAEK----LGIPYRYTVLSPDHLPSEQSQAERDMYNQGADRLFGD 151 (404) T ss_dssp -HHHHHHHHHHH--HTTCSEEEEEECHHHHHHHHHHHHH----HTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHHHHHH T ss_pred -HHHHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHH----CCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf -99999999984--2798999999971788999999986----1887200245753244323320256778888888899 Q ss_pred HC------CCCCCCHHHHH------------------CCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEE Q ss_conf 40------15677422320------------------0255314763882112210013558889761876556505998 Q gi|254780767|r 143 VI------SILPFEKEVMQ------------------RLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLL 198 (383) Q Consensus 143 ~~------~ifpFE~~~f~------------------k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~ll 198 (383) .+ .-+|.....+. +....+...++-+........ ....... +..+.+.+.+. T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~v~v~ 227 (404) T 3h4t_A 152 AVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDQRPL--SAELEGF--LRAGSPPVYVG 227 (404) T ss_dssp HHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCCCCCC--CHHHHHH--HHTSSCCEEEC T ss_pred HHHHHHHHCCCCCCCHHHCCCCCCCCEECCCHHHCCCCCCCCEEEEECCCCCCCCCCC--CHHHHHH--HHCCCCEEEEE T ss_conf 9999998617985202210344554222256442256776660365458667766678--8889987--51189818996 Q ss_pred ECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHHHCCCHH Q ss_conf 5387430123051118999876402735126201663368899999960488850552-055203578876355233115 Q gi|254780767|r 199 PGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIII-DKEQKKQVFMTCNAAMAASGT 277 (383) Q Consensus 199 PGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~l~~sd~ai~~SGT 277 (383) .||...- ...+..++++...+ +..+++...+... .......++.+ ..-+...++..+|+.|+-+|. T Consensus 228 ~gs~~~~-~~~~~~~~~al~~~-----~~~~i~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~l~~~~~~I~hgG~ 294 (404) T 3h4t_A 228 FGSGPAP-AEAARVAIEAVRAQ-----GRRVVLSSGWAGL-------GRIDEGDDCLVVGEVNHQVLFGRVAAVVHHGGA 294 (404) T ss_dssp CTTSCCC-TTHHHHHHHHHHHT-----TCCEEEECTTTTC-------CCSSCCTTEEEESSCCHHHHGGGSSEEEECCCH T ss_pred ECCCCCC-HHHHHHHHHHHHHC-----CCEEEEEECCCCC-------CCCCCCCCEEEECCCCCHHHHHHCCEEEEECCC T ss_conf 1676683-79999999999967-----9869999535666-------655678874651345506655225689982680 Q ss_pred HHH-HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 668-8876275302540577410000102467610230244078426124205489899999999984498999999999 Q gi|254780767|r 278 VIL-ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHG 356 (383) Q Consensus 278 aTL-E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~ 356 (383) .|+ |++.+|+|+|++--.. =.....+.+.-.-+|+ .++ ++++|++.|+.++.++++ +++|+ + T Consensus 295 ~ti~Eal~~GvP~v~~P~~~-dQ~~nA~~l~~~G~G~--------~l~---~~~~t~~~l~~ai~~ll~-~~~r~----~ 357 (404) T 3h4t_A 295 GTTTAVTRAGAPQVVVPQKA-DQPYYAGRVADLGVGV--------AHD---GPTPTVESLSAALATALT-PGIRA----R 357 (404) T ss_dssp HHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEE--------ECS---SSSCCHHHHHHHHHHHTS-HHHHH----H T ss_pred HHHHHHHHHCCCEEEECCCC-CHHHHHHHHHHCCCEE--------ECC---CCCCCHHHHHHHHHHHHC-HHHHH----H T ss_conf 59999998299989806724-2899999999879888--------788---578999999999999859-99999----9 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 9999998389999899999999986 Q gi|254780767|r 357 FENLWDRMNTKKPAGHMAAEIVLQV 381 (383) Q Consensus 357 ~~~~~~~Lg~~~~a~~~AA~~I~~~ 381 (383) .+++.+++...+ ..+.| +.+.+. T Consensus 358 a~~~a~~~~~~~-~~~~a-~~l~e~ 380 (404) T 3h4t_A 358 AAAVAGTIRTDG-TTVAA-KLLLEA 380 (404) T ss_dssp HHHHHTTCCCCH-HHHHH-HHHHHH T ss_pred HHHHHHHHHHCC-HHHHH-HHHHHH T ss_conf 999999987558-39999-999999 No 23 >3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase, center for structural genomics of infectious diseases; 2.35A {Vibrio cholerae} Probab=99.20 E-value=5e-08 Score=71.48 Aligned_cols=340 Identities=14% Similarity=0.079 Sum_probs=180.3 Q ss_pred CCC-EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEE-EECCHH--HHH-----CCCEEEECHHHCCEEEHHHHHHHHHH Q ss_conf 874-599997682147899999999997389983999-971789--994-----78806504445311013674664599 Q gi|254780767|r 2 NSL-KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLV-GVGGPS--LQK-----EGLVSLFDFSELSVIGIMQVVRHLPQ 72 (383) Q Consensus 2 ~~m-ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~-giGG~~--m~~-----~G~~~~~~~~~l~v~G~~evl~~~~~ 72 (383) +.| ||++++|--+-=...+.|+++|++. +++++. -+.|.+ |.. -|.+.-++ +.+..-.+.+. .. T Consensus 23 ~~MkKI~~v~GtR~e~~kl~pli~~l~~~--~~~~~~li~TGqH~d~~~~~~~~~~i~~d~~---~~~~~~~~s~~--~~ 95 (396) T 3dzc_A 23 NAMKKVLIVFGTRPEAIKMAPLVQQLCQD--NRFVAKVCVTGQHREMLDQVLELFSITPDFD---LNIMEPGQTLN--GV 95 (396) T ss_dssp -CCEEEEEEECSHHHHHHHHHHHHHHHHC--TTEEEEEEECCSSSHHHHHHHHHTTCCCSEE---CCCCCTTCCHH--HH T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHHHC--CCCCEEEEEECCCHHHHHHHHHHCCCCCCEE---ECCCCCCCCHH--HH T ss_conf 59861899997037099999999999738--9987799990899889999998549888732---21588999899--99 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCC-CCCCC-CCHHHHHHHHHHHCCC-CCC Q ss_conf 99999999861001288868985117765799998663013463111100221-10036-6355799999864015-677 Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSV-WAWRE-GRARKMCAYINQVISI-LPF 149 (383) Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~Pqv-WAWr~-~R~k~~~~~~d~~~~i-fpF 149 (383) +-.....+-+.+.+.+||+|+.. .|=+=-+|-.+-....+||++|.=+=-. --|.+ .-=...+..+|++..+ |+- T Consensus 96 ~~~~i~~~~~~~~~~kpD~VlV~--GDr~e~la~a~aa~~~~ipi~HiegG~rs~~~~~~~pde~~R~~isklS~lhf~~ 173 (396) T 3dzc_A 96 TSKILLGMQQVLSSEQPDVVLVH--GDTATTFAASLAAYYQQIPVGHVEAGLRTGNIYSPWPEEGNRKLTAALTQYHFAP 173 (396) T ss_dssp HHHHHHHHHHHHHHHCCSEEEEE--TTSHHHHHHHHHHHTTTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHTCSEEEES T ss_pred HHHHHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCEEEEECC T ss_conf 99999999999997199999995--8886225489999982997899971265468877982677663235420499515 Q ss_pred CHHHHHCC-----CCCCEEECCCCCCCCCCCCCC--------HHHHHHH-CCCCCCCCEEEEEECCCCCCHHHHCCCHHH Q ss_conf 42232002-----553147638821122100135--------5888976-187655650599853874301230511189 Q gi|254780767|r 150 EKEVMQRL-----GGPPTTFVGHPLSSSPSILEV--------YSQRNKQ-RNTPSQWKKILLLPGSRAQEIYKILPFFES 215 (383) Q Consensus 150 E~~~f~k~-----~~~~~~fVGHPl~d~~~~~~~--------~~~~~~~-~~~~~~~~~I~llPGSR~~EI~~~lP~~l~ 215 (383) .+...++. ..-++..||+|..|.+..... ....... ..++..++.+++..=-+.++ ...+--+.. T Consensus 174 te~~~~~L~~~G~~~~~I~~vG~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvt~Hr~~n~-~~~~~~~~~ 252 (396) T 3dzc_A 174 TDTSRANLLQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESF-GGGFERICQ 252 (396) T ss_dssp SHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCC-TTHHHHHHH T ss_pred CHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC-CHHHHHHHH T ss_conf 3568999987078854440114430778998876403426766667654344356787799973621022-058999999 Q ss_pred HHHHHHHCCCCCEEEECCCCCHHH--HHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCE Q ss_conf 998764027351262016633688--999999604888505520----55203578876355233115668887627530 Q gi|254780767|r 216 AVASLVKRNPFFRFSLVTVSSQEN--LVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAASGTVILELALCGIPV 289 (383) Q Consensus 216 ~~~~l~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~ 289 (383) ....+....++..+++|..+.... ....... ...++.+. ..+...++..|++.|+=||+.-.|++.+|+|+ T Consensus 253 ~~~~~~~~~~~~~ii~p~~~~~~~~~~~~~~~~---~~~ni~~i~~l~~~~fl~ll~~a~~vIgnSssg~~EA~~lg~P~ 329 (396) T 3dzc_A 253 ALITTAEQHPECQILYPVHLNPNVREPVNKLLK---GVSNIVLIEPQQYLPFVYLMDRAHIILTDSGGIQEEAPSLGKPV 329 (396) T ss_dssp HHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTT---TCTTEEEECCCCHHHHHHHHHHCSEEEESCSGGGTTGGGGTCCE T ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH---CCCCCEECCCCCHHHHHHHHHHCEEEECCCHHHHHHHHHHCCCE T ss_conf 999998626456503313678513567898862---46554005887689999998503588736455788898728988 Q ss_pred EEEC-CCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 2540-577410000102467610230244078426124205489899999999984498999999999999999838999 Q gi|254780767|r 290 VSIY-KSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKK 368 (383) Q Consensus 290 IV~Y-k~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~ 368 (383) |++= ++-|-.. +....+-+ -..+.+.|.+++.++++++..++.+. +...-.| .| T Consensus 330 Inir~~ter~e~-----v~~~~~il---------------v~~d~~~I~~ai~~~l~~~~~~~~~~----~~~npYG-dG 384 (396) T 3dzc_A 330 LVMRETTERPEA-----VAAGTVKL---------------VGTNQQQICDALSLLLTDPQAYQAMS----QAHNPYG-DG 384 (396) T ss_dssp EECCSSCSCHHH-----HHHTSEEE---------------CTTCHHHHHHHHHHHHHCHHHHHHHH----TSCCTTC-CS T ss_pred EECCCCCCCCCC-----CCCCCEEE---------------CCCCHHHHHHHHHHHHCCHHHHHHCC----CCCCCCC-CC T ss_conf 965776657102-----01780697---------------78999999999999963988886305----4789897-98 Q ss_pred CHHHHHHHHHH Q ss_conf 98999999999 Q gi|254780767|r 369 PAGHMAAEIVL 379 (383) Q Consensus 369 ~a~~~AA~~I~ 379 (383) .|+++.++++. T Consensus 385 ~as~rIv~iL~ 395 (396) T 3dzc_A 385 KACQRIADILA 395 (396) T ss_dssp CHHHHHHHHHH T ss_pred HHHHHHHHHHC T ss_conf 59999999963 No 24 >1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Probab=99.18 E-value=2.6e-08 Score=73.42 Aligned_cols=337 Identities=10% Similarity=0.016 Sum_probs=148.4 Q ss_pred CEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEEE-------CHHHCCEEEHHHHHHHHHHH Q ss_conf 45999976821478999-99999997389983999971--7899947880650-------44453110136746645999 Q gi|254780767|r 4 LKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLF-------DFSELSVIGIMQVVRHLPQF 73 (383) Q Consensus 4 mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~~-------~~~~l~v~G~~evl~~~~~~ 73 (383) |||+|.++.+-||++.. .|.++|+++ +.++.|.+-+ .+..++.|++.+- ........+..+....+... T Consensus 1 M~il~~~~gt~Ghv~P~lala~~L~~~-Gh~V~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (415) T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDL-GADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFTTEA 79 (415) T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHTTCCEEECCC-------CCSCCCHHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHCCCEEEECCCCHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 979998898646899999999999987-9989999583077789877985998786155453024620089999999999 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCC----------CCCCCCCCH-----HH--- Q ss_conf 999999986100128886898511776579999866301346311110022----------110036635-----57--- Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPS----------VWAWREGRA-----RK--- 135 (383) Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~Pq----------vWAWr~~R~-----k~--- 135 (383) .....+..... ...+|.+|. |.-.++...+..+... .++|.+...... .+.+...+. .. T Consensus 80 ~~~~~~~l~~~-~~~~~~~v~-~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (415) T 1iir_A 80 IATQFDEIPAA-AEGCAAVVT-TGLLAAAIGVRSVAEK-LGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWE 156 (415) T ss_dssp HHHHHHHHHHH-TTTCSEEEE-ESCHHHHHHHHHHHHH-HTCCEEEEESSGGGSCCSSSCCCC---------CHHHHHHH T ss_pred HHHHHHHHHHH-HCCCCEEEE-ECCCHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99999999987-447995999-0544137699999999-39984035577533332224553334554320111024555 Q ss_pred ---------HHHHHHHH---CC------------------CCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHH Q ss_conf ---------99999864---01------------------5677422320025531476388211221001355888976 Q gi|254780767|r 136 ---------MCAYINQV---IS------------------ILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQ 185 (383) Q Consensus 136 ---------~~~~~d~~---~~------------------ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~ 185 (383) +....+.. +. ....+...... ...+..++|-......... ...... T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~~~--~~~~~~- 232 (415) T 1iir_A 157 RNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQP-TDLDAVQTGAWILPDERPL--SPELAA- 232 (415) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCC-CSSCCEECCCCCCCCCCCC--CHHHHH- T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC--CHHHHH- T ss_conf 433456665435677899984786310133311354200225633367777-6655540167556765547--888986- Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE-ECCCCHHH Q ss_conf 18765565059985387430123051118999876402735126201663368899999960488850552-05520357 Q gi|254780767|r 186 RNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIII-DKEQKKQV 264 (383) Q Consensus 186 ~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~ 264 (383) .++.....|.+--||... -... +...+..+.+........... ...+ ......++.+ ..-+..++ T Consensus 233 -~~~~~~~~v~~~~g~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~~-~~~~--------~~~~~~~v~~~~~~p~~~l 298 (415) T 1iir_A 233 -FLDAGPPPVYLGFGSLGA-PADA---VRVAIDAIRAHGRRVILSRGW-ADLV--------LPDDGADCFAIGEVNHQVL 298 (415) T ss_dssp -HHHTSSCCEEEECC---C-CHHH---HHHHHHHHHHTTCCEEECTTC-TTCC--------CSSCGGGEEECSSCCHHHH T ss_pred -HHCCCCCEEEEECCCCCC-CHHH---HHHHHHHHHHHCEEEEEECCC-CCCC--------CCCCCCCEEEEECCCHHHH T ss_conf -323389769995686567-5589---999999987514234663256-6555--------5568998899711688999 Q ss_pred HHHHHHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHH Q ss_conf 8876355233115668-887627530254057741000010246761023024407842612420548989999999998 Q gi|254780767|r 265 FMTCNAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERL 343 (383) Q Consensus 265 l~~sd~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~l 343 (383) |..+++.|+-.|..|+ |++..|+|+|++-... =.....+.+.-.-+|+. ++ ++++|++.+++++..+ T Consensus 299 L~~~~~~I~hgG~~s~~Eal~~GvP~l~~P~~~-dQ~~nA~~~~~~G~g~~--------l~---~~~~t~~~l~~ai~~l 366 (415) T 1iir_A 299 FGRVAAVIHHGGAGTTHVAARAGAPQILLPQMA-DQPYYAGRVAELGVGVA--------HD---GPIPTFDSLSAALATA 366 (415) T ss_dssp GGGSSEEEECCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEEE--------CS---SSSCCHHHHHHHHHHH T ss_pred HHHCCEEEEECCHHHHHHHHHHCCCEEEECCCC-CHHHHHHHHHHCCCEEE--------CC---CCCCCHHHHHHHHHHH T ss_conf 742699999467289999998499999806724-48999999998798886--------88---3689999999999999 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 44989999999999999998389999899999999986 Q gi|254780767|r 344 SQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQV 381 (383) Q Consensus 344 l~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~ 381 (383) ++| ++|+ +.+++.+++...+ +.+ +|+.|.+. T Consensus 367 l~d-~~r~----~a~~~~~~~~~~~-~~~-~a~~~~e~ 397 (415) T 1iir_A 367 LTP-ETHA----RATAVAGTIRTDG-AAV-AARLLLDA 397 (415) T ss_dssp TSH-HHHH----HHHHHHHHSCSCH-HHH-HHHHHHHH T ss_pred HCH-HHHH----HHHHHHHHHHHCC-HHH-HHHHHHHH T ss_conf 798-9999----9999999987508-899-99999999 No 25 >3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Probab=99.16 E-value=1.9e-10 Score=87.44 Aligned_cols=337 Identities=17% Similarity=0.168 Sum_probs=165.9 Q ss_pred CEEEEEECCC---CH-HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 4599997682---14-7899999999997389983999971789994788065044453110136746645999999999 Q gi|254780767|r 4 LKIAVIAGEI---SG-DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 4 mki~i~aGE~---SG-D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) |||.+++..+ || ..+...|+++|.+ +.++.+++.... |.......+...+.... -...........+. T Consensus 1 MKIl~i~~~~~~~~G~~~~~~~l~~~L~~--~heV~v~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 72 (413) T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISK--AHEVIVFGIHAF-----GRSVHANIEEFDAQTAE-HVRGLNEQGFYYSG 72 (413) T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTT--TSEEEEEEESCC-----SCCSCSSSEEEEHHHHH-HHTTCCSTTCCHHH T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC-----CCCCCCCCCEEECCCCC-CCCCCCCCHHHHHH T ss_conf 94899889999988399999999999865--898999975788-----86556676244133335-43435642469999 Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHHHCCCCCCCHHHHHCCC Q ss_conf 986100128886898511776579999866301346311110022110036-6355799999864015677422320025 Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWRE-GRARKMCAYINQVISILPFEKEVMQRLG 158 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~-~R~k~~~~~~d~~~~ifpFE~~~f~k~~ 158 (383) +.+.++..+||+++....+.+...+...+.+....++...+.....+.+.. ...+...+.+|.+++.-.+....+.+.. T Consensus 73 l~~~i~~~~pDiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~~ 152 (413) T 3oy2_A 73 LSEFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHPKVVGVMAMSKCWISDICNYG 152 (413) T ss_dssp HHHHHHHHCCSEEEEEECHHHHHHHHHHGGGCCSCCEEEEEECCCSBSCCGGGGGGGGCTTEEEEEESSTHHHHHHHHTT T ss_pred HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHC T ss_conf 99999985999999937617778999987532574379984366430024789999999757999987899999999738 Q ss_pred -CCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCH Q ss_conf -5314763882112210013558889761876556505998538743012305111899987640273512620166336 Q gi|254780767|r 159 -GPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQ 237 (383) Q Consensus 159 -~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~ 237 (383) ..+...+.|..-.... .........+. .....+....| |.. -.+..+.++.+...+.+..+.....+...... T Consensus 153 ~~~~~~~i~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~k~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (413) T 3oy2_A 153 CKVPINIVSHFVDTKTI---YDARKLVGLSE-YNDDVLFLNMN-RNT-ARKRLDIYVLAAARFISKYPDAKVRFLCNSHH 226 (413) T ss_dssp CCSCEEECCCCCCCCCC---TTHHHHTTCGG-GTTSEEEECCS-CSS-GGGTHHHHHHHHHHHHHHCTTCCEEEEEECCT T ss_pred CCCCEEEECCCCCCCCC---CCHHHHHHCCC-CCCCEEEEEEE-CCC-CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 89877995588671004---73245552366-77847998742-254-23598999999999986476653257852576 Q ss_pred ------HHHHHHHHHHC-------CCCCEEEE----ECCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCC Q ss_conf ------88999999604-------88850552----0552035788763552331-----15668887627530254057 Q gi|254780767|r 238 ------ENLVRCIVSKW-------DISPEIII----DKEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKS 295 (383) Q Consensus 238 ------~~~~~~~~~~~-------~~~~~i~~----~~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~ 295 (383) ........... .....+.. ..++..++++.||+.+.+| |.+.+|++.+|+|.| +... T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~l~~~~~~ad~~v~ps~~E~f~~~~~Eama~g~PvI-~s~~ 305 (413) T 3oy2_A 227 ESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLI-ISAV 305 (413) T ss_dssp TCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEE-EECC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHCCCCEE-ECCC T ss_conf 421025667889998755667650578779938979999999999987652210021012234999998299899-8689 Q ss_pred CCCEEEEE----ECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 74100001----024676102302440784261242054898999999999844989999999999999 Q gi|254780767|r 296 EWIVNFFI----FYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENL 360 (383) Q Consensus 296 ~~lt~~i~----~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~ 360 (383) +.+...+. .++....... ....-....+....+++.+++.+ +++.|++.|++|-++.++. T Consensus 306 gg~~eii~~~~g~lv~p~~~~~----~~~~~~~g~~~~~~d~~~la~~i-~l~~d~~~~~~~~~~ar~~ 369 (413) T 3oy2_A 306 GGADDYFSGDCVYKIKPSAWIS----VDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRKEYGKRVQDF 369 (413) T ss_dssp HHHHHHSCTTTSEEECCCEEEE----CTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHHHHHHHHHHH T ss_pred CCHHHHCCCCCEEEECCCCCCC----CCCCCCCCCCCCCCCHHHHHHHH-HHHCCHHHHHHHHHHHHHH T ss_conf 9707650498348968874222----22223445322569999999999-9835999999999999999 No 26 >3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Probab=99.09 E-value=3.9e-09 Score=78.81 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=120.2 Q ss_pred CEEEEEE-CCCC---HHHHHH-HHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHH Q ss_conf 4599997-6821---478999-99999997389983999971--789994788065044453110136746645999999 Q gi|254780767|r 4 LKIAVIA-GEIS---GDLLAG-DLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFR 76 (383) Q Consensus 4 mki~i~a-GE~S---GD~~~a-~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~ 76 (383) |||++.| |..+ |++..+ .|+++|+ +..|...+ +......+... ..++..+ T Consensus 1 MkIl~~~~~~~~~G~GHi~r~l~La~~l~-----~~~f~~~~~~~~~~~~~~~~~----~~~~~~~-------------- 57 (282) T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLAKQYS-----DVSFACLPLEGSLIDEIPYPV----YELSSES-------------- 57 (282) T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHHTTCS-----SEEEEECCCTTCCGGGCCSCE----EECSSSC-------------- T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHH-----HCCEEEEECCCCHHHHCCCCE----EEECCHH-------------- T ss_conf 97999954889836015899999999874-----587999986420165749976----8844220-------------- Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHC Q ss_conf 99998610012888689851177657999986630134631111002211003663557999998640156774223200 Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQR 156 (383) Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k 156 (383) ..+....++..+||++|. |...++....+..+.. .+.+++....+..+.|...- +..........+.. T Consensus 58 ~~~~~~~~~~~~~~~ii~-d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 125 (282) T 3hbm_A 58 IYELINLIKEEKFELLII-DHYGISVDDEKLIKLE-TGVKILSFDDEIKPHHCDIL----------LNVNAYAKASDYEG 125 (282) T ss_dssp HHHHHHHHHHHTCSEEEE-ECTTCCHHHHHHHHHH-HCCEEEEECSSCCCCCCSEE----------EECSTTCCGGGGTT T ss_pred HHHHHHHHHCCCCCEEEE-CCCCCCHHHHHHHHHC-CCCEEEEECCCCHHHHHHHH----------HHHCHHHHHHHHHH T ss_conf 888888876239999999-2897684999999864-79717884153123323202----------34010356655542 Q ss_pred C-CCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC Q ss_conf 2-553147638821122100135588897618765565059985387430123051118999876402735126201663 Q gi|254780767|r 157 L-GGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS 235 (383) Q Consensus 157 ~-~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~ 235 (383) . ......++|.+.... .................+.+..|+..++.. .+......... ......+.... T Consensus 126 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~ 194 (282) T 3hbm_A 126 LVPFKCEVRCGFSYALI-----REEFYQEAKENRKKKYDFFICMGGTDIKNL-----SLQIASELPKT-KIISIATSSSN 194 (282) T ss_dssp TCC-CCEEEESGGGCCC-----CHHHHHHTTCCCCCCEEEEEECCSCCTTCH-----HHHHHHHSCTT-SCEEEEECTTC T ss_pred CCCCCCEEECCCCCCCC-----CHHHHHHHHCCCCCCEEEEEEECCCCCHHH-----HHHHHHHHHHH-HCCCCEEECCH T ss_conf 17755267225410001-----055542110124454013785147660144-----45556665543-20221010202 Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEC Q ss_conf 3688999999604888505520552035788763552331156688876275302540 Q gi|254780767|r 236 SQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIY 293 (383) Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Y 293 (383) .... ..........+..+....++..+.|..||++|+++|+.+.|++.+|+|++++. T Consensus 195 ~~~~-~~~~~~~~~~nv~~~~~~~~~~~~~~~ad~vI~~gG~T~~E~~~~g~P~i~ip 251 (282) T 3hbm_A 195 PNLK-KLQKFAKLHNNIRLFIDHENIAKLMNESNKLIISASSLVNEALLLKANFKAIC 251 (282) T ss_dssp TTHH-HHHHHHHTCSSEEEEESCSCHHHHHHTEEEEEEESSHHHHHHHHTTCCEEEEC T ss_pred HHHH-HHHHCCCCCCEEEECCCCCCHHHHHHHCCEEEECCCHHHHHHHHHCCCEEEEE T ss_conf 4443-11000145631898357561999998689999888648999999599989997 No 27 >3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} PDB: 3hbj_A* Probab=98.85 E-value=7.2e-06 Score=57.24 Aligned_cols=354 Identities=10% Similarity=0.006 Sum_probs=156.7 Q ss_pred CEEEEEECCCCHHHHH-HHHHHHHHHHCCCCEEEEEECCHHHHHCC----CEEEECH-----------HHCCEEEHHHHH Q ss_conf 4599997682147899-99999999738998399997178999478----8065044-----------453110136746 Q gi|254780767|r 4 LKIAVIAGEISGDLLA-GDLIKSLKEMVSYPINLVGVGGPSLQKEG----LVSLFDF-----------SELSVIGIMQVV 67 (383) Q Consensus 4 mki~i~aGE~SGD~~~-a~li~~Lk~~~~~~~~~~giGG~~m~~~G----~~~~~~~-----------~~l~v~G~~evl 67 (383) +.|++.+=-..|++.. ..|.++|.++ ++++.+..+..+...... .+..-++ ...+.....+.+ T Consensus 14 ~Hv~~~p~P~~gH~~P~l~la~~L~~r-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 92 (454) T 3hbf_A 14 LHVAVLAFPFGTHAAPLLSLVKKIATE-APKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVHDGLPKGYVSSGNPREPI 92 (454) T ss_dssp CEEEEECCCSSSSHHHHHHHHHHHHHH-CTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEECCCCCCTTCCCCSCTTHHH T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHH T ss_conf 628896873174899999999999978-9957999804764225555314556899717667889997544446757899 Q ss_pred HHHH-HHHHHHHHHHH---HCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECC-------------------- Q ss_conf 6459-99999999986---10012888689851177657999986630134631111002-------------------- Q gi|254780767|r 68 RHLP-QFIFRINQTVE---LIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCP-------------------- 123 (383) Q Consensus 68 ~~~~-~~~~~~~~~~~---~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~P-------------------- 123 (383) ..+. .......+..+ .....++|++|.--+..+.+-+|.++ ++|.+.++.. T Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~d~vi~d~~~~~~~~~a~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (454) T 3hbf_A 93 FLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEM-----HAKWVPLWTAGPHSLLTHVYTDLIREKTGS 167 (454) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHT-----TCEEEEEECSCHHHHHHHHTHHHHHHTCCH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-----CCCEEEEECCCHHHHHHHHHHHHCCCCCCC T ss_conf 999999887579999999972599975999747316899999996-----898599724736888887621101334564 Q ss_pred -------------CCCCCC---------CCCHHHHHHHH----HHHCCCCC--------CCH--HHHHCCCCCCEEECCC Q ss_conf -------------211003---------66355799999----86401567--------742--2320025531476388 Q gi|254780767|r 124 -------------SVWAWR---------EGRARKMCAYI----NQVISILP--------FEK--EVMQRLGGPPTTFVGH 167 (383) Q Consensus 124 -------------qvWAWr---------~~R~k~~~~~~----d~~~~ifp--------FE~--~~f~k~~~~~~~fVGH 167 (383) ..+.+. ...-..+.++. ..+-..+. .+. ..+-....-+..++|. T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 247 (454) T 3hbf_A 168 KEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNVGP 247 (454) T ss_dssp HHHTTSSCBCCSTTSCCBCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTSSCEEECCC T ss_pred CCCCCCCHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHCCCCCEEECCC T ss_conf 44466411110467750346656431147632589999999997511123321363776453666554303443011355 Q ss_pred CCCCCCCCC-CCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 211221001-3558889761876556505998538743012305111899987640273512620166336889999996 Q gi|254780767|r 168 PLSSSPSIL-EVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVS 246 (383) Q Consensus 168 Pl~d~~~~~-~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 246 (383) ......... ....+....+.-.++.+.|.+--||...--......+.++...+.. ...+.+.. ......-..... T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~s~Gs~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~-~~~~~~p~~~~~ 323 (454) T 3hbf_A 248 FNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGF---PFIWSFRG-DPKEKLPKGFLE 323 (454) T ss_dssp HHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCC---CEEEECCS-CHHHHSCTTHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC---CEEEEEEC-CCCCCCCHHHHH T ss_conf 43468853334625554577608986236660366544668899999999986588---55999956-853459713555 Q ss_pred HCCCCCEEEEECCCCHHHHHH--HHHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEE-ECCCCCCEEEEHHHCCCCC Q ss_conf 048885055205520357887--6355233115668-88762753025405774100001-0246761023024407842 Q gi|254780767|r 247 KWDISPEIIIDKEQKKQVFMT--CNAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFI-FYIKTWTCALPNLIVDYPL 322 (383) Q Consensus 247 ~~~~~~~i~~~~~~~~~~l~~--sd~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~-~lik~~~i~LpNii~~~~i 322 (383) ....+.. ....-...++|.+ +++.|+-.|..|. |+...|+|||++--.. =..... |.....-+|. .+ T Consensus 324 ~~~~n~~-~~~~~Pq~~iL~hp~~~~fItHGG~gs~~EAl~~GvP~v~~P~~~-DQ~~na~rv~~~~G~G~-------~l 394 (454) T 3hbf_A 324 RTKTKGK-IVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFG-DQGLNTILTESVLEIGV-------GV 394 (454) T ss_dssp HTTTTEE-EESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHTTSCSEE-------EC T ss_pred HCCCCEE-EEECCCHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHCEEE-------EC T ss_conf 2255336-983062688861653028986066553899998699989467210-14899999999748479-------70 Q ss_pred CCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHH Q ss_conf 6124205489899999999984498999999999999999838---9999899999999986 Q gi|254780767|r 323 VPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMN---TKKPAGHMAAEIVLQV 381 (383) Q Consensus 323 vPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg---~~~~a~~~AA~~I~~~ 381 (383) =+ +++|++.|..++.++|+|+..+ ..+++.+++++... ++|.+|....+.+.+. T Consensus 395 ~~----~~~t~~~l~~av~~vL~d~~~~-~yr~~a~~l~~~~~~Av~~ggss~~~~~~~~~~ 451 (454) T 3hbf_A 395 DN----GVLTKESIKKALELTMSSEKGG-IMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQI 451 (454) T ss_dssp GG----GSCCHHHHHHHHHHHHSSHHHH-HHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHH T ss_pred CC----CCCCHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 38----9708999999999996695489-999999999999999850798589999999998 No 28 >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Probab=98.69 E-value=9.1e-06 Score=56.59 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=93.8 Q ss_pred HHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCC-------------H---HHHHHHHHHH Q ss_conf 76187655650599853874301230511189998764027351262016633-------------6---8899999960 Q gi|254780767|r 184 KQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSS-------------Q---ENLVRCIVSK 247 (383) Q Consensus 184 ~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~-------------~---~~~~~~~~~~ 247 (383) ...+....+..+.+..| |-.+ .+..+.+++++..+.+..++..+++..... . ...+...... T Consensus 253 ~~~~~~~~~~~~il~~G-rl~~-~kg~~~li~a~~~~~~~~~~~~l~lvg~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 330 (499) T 2r60_A 253 RDLGSERMELPAIIASS-RLDQ-KKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDN 330 (499) T ss_dssp HHSCGGGTTSCEEEECS-CCCG-GGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHH T ss_pred HHHCCCCCCCEEEEEEC-CCCC-CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 54046676875999960-4564-332899999999988638995399998148875156777668889999999987640 Q ss_pred CCCCCEEEEECCC--------CHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEE Q ss_conf 4888505520552--------035788763552331-----156688876275302540577410000102467610230 Q gi|254780767|r 248 WDISPEIIIDKEQ--------KKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALP 314 (383) Q Consensus 248 ~~~~~~i~~~~~~--------~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~Lp 314 (383) .+....+...... ...++..+|+.+..| |.+.+|++.+|+|.| ++.++.+.. T Consensus 331 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~a~~~v~pS~~e~~~~~~lEAma~G~PVI-~s~~gg~~e-------------- 395 (499) T 2r60_A 331 NDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAV-VTRNGGPAE-------------- 395 (499) T ss_dssp TTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEE-EESSBHHHH-------------- T ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHCCCCEE-ECCCCCHHH-------------- T ss_conf 15555134227531344466799999855710157401364457999998799899-917998799-------------- Q ss_pred HHHCCCC---CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHC Q ss_conf 2440784---2612420548989999999998449899999999999-9999838 Q gi|254780767|r 315 NLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFE-NLWDRMN 365 (383) Q Consensus 315 Nii~~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~-~~~~~Lg 365 (383) ++.+.+ ++ +..+++.+++++.++++|++.+++|.++.. .+.++.. T Consensus 396 -~v~~g~~G~lv-----~~~d~~~la~ai~~ll~d~~~~~~~~~~ar~~~~~~fs 444 (499) T 2r60_A 396 -ILDGGKYGVLV-----DPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYT 444 (499) T ss_dssp -HTGGGTSSEEE-----CTTCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSB T ss_pred -HHCCCCEEEEE-----CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC T ss_conf -96489749997-----89999999999999987999999999999999998699 No 29 >2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen synthase two rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Probab=98.67 E-value=3.1e-07 Score=66.30 Aligned_cols=181 Identities=14% Similarity=0.070 Sum_probs=109.7 Q ss_pred CCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHC--CCCCEEEECCCC Q ss_conf 553147638821122100135588897618765565059985387430123051118999876402--735126201663 Q gi|254780767|r 158 GGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKR--NPFFRFSLVTVS 235 (383) Q Consensus 158 ~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~--~~~~~~~i~~~~ 235 (383) +|+++.+. +|-.......+.+...++++++++ ++ +.++-| |-.+-++....+++++..+.++ +++++|++.... T Consensus 4 NGvD~~~f-~p~~~~~~~~~~~~~~~~~~~~~~-~~-~il~vG-rl~~~~Kg~~~li~a~~~l~~~~~~~~~~l~ivG~~ 79 (200) T 2bfw_A 4 NGIDCSFW-NESYLTGSRDERKKSLLSKFGMDE-GV-TFMFIG-RFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG 79 (200) T ss_dssp -CCCTTTS-SGGGSCSCHHHHHHHHHHHTTCCS-CE-EEEEES-CBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB T ss_pred CCEEHHHC-CCCCCCCCHHHHHHHHHHHHCCCC-CC-EEEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECC T ss_conf 97618771-997776115799999999949899-97-899991-788241698999999998886377998699998369 Q ss_pred C--HHHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECC Q ss_conf 3--6889999996048885055--20552035788763552331-----1566888762753025405774100001024 Q gi|254780767|r 236 S--QENLVRCIVSKWDISPEII--IDKEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYI 306 (383) Q Consensus 236 ~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~li 306 (383) . .+...+...........+. ...++..++++.||+.+.+| |.+.+|++.+|+|.| ++..+..... + T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adi~v~ps~~E~~~~~~~EAma~G~pvi-~~~~~g~~e~----i 154 (200) T 2bfw_A 80 DPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPI-ASAVGGLRDI----I 154 (200) T ss_dssp CHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEE-EESCHHHHHH----C T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHCCCCEE-EECCCCCCEE----E T ss_conf 7899999999998689938998307989999987504762405676789868999998898499-9649987147----8 Q ss_pred CCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH Q ss_conf 676102302440784261242054898999999999844-9899999999999999 Q gi|254780767|r 307 KTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQ-DTLQRRAMLHGFENLW 361 (383) Q Consensus 307 k~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~-d~~~r~~~~~~~~~~~ 361 (383) +-.. | .++ +.-+++.+++.+..+++ |++.++++.++.++-. T Consensus 155 ~~~~-g------------~l~-~~~~~~~la~~i~~~l~~~~~~~~~~~~~a~~~a 196 (200) T 2bfw_A 155 TNET-G------------ILV-KAGDPGELANAILKALELSRSDLSKFRENCKKRA 196 (200) T ss_dssp CTTT-C------------EEE-CTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_pred ECCC-E------------EEE-CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 5885-7------------997-7999999999999999579999999999999999 No 30 >2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10 Probab=98.65 E-value=6.7e-06 Score=57.45 Aligned_cols=180 Identities=11% Similarity=0.041 Sum_probs=89.2 Q ss_pred HCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCC---HHHHHHHHHHHCCCCCEEEEECCCC Q ss_conf 6187655650599853874301230511189998764027351262016633---6889999996048885055205520 Q gi|254780767|r 185 QRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSS---QENLVRCIVSKWDISPEIIIDKEQK 261 (383) Q Consensus 185 ~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~ 261 (383) ..........+.+..||-...-.... .+.+..+......+.+++-.... ..............+..+.. .... T Consensus 288 ~~~~~~~~~vv~~~~gs~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~v~~-w~pq 363 (482) T 2pq6_A 288 WLESKEPGSVVYVNFGSTTVMTPEQL---LEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIAS-WCPQ 363 (482) T ss_dssp HHTTSCTTCEEEEECCSSSCCCHHHH---HHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHHHHTTTEEEES-CCCH T ss_pred HHHHCCCCCEEEECCCCCCCCCHHHH---HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEE-CCCH T ss_conf 87506777413321442002573899---9999998743677689972466666422374011210444522873-3877 Q ss_pred HHHH--HHHHHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEEEC-CCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHH Q ss_conf 3578--876355233115668-8876275302540577410000102-46761023024407842612420548989999 Q gi|254780767|r 262 KQVF--MTCNAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFIFY-IKTWTCALPNLIVDYPLVPEYFNSMIRSEALV 337 (383) Q Consensus 262 ~~~l--~~sd~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~~l-ik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~ 337 (383) .+++ ..+++.|+-.|-.|. |+...|+|||++--. .=.....+. ....-+|+- +..++|+++|. T Consensus 364 ~~~L~hp~~~~fVtHGG~~S~~EAl~~GVP~vv~P~~-~DQ~~na~rv~~~lG~G~~------------l~~~~t~~~l~ 430 (482) T 2pq6_A 364 DKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFF-ADQPTDCRFICNEWEIGME------------IDTNVKREELA 430 (482) T ss_dssp HHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHTSCCEEE------------CCSSCCHHHHH T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHCCCCEEECCCC-CCCHHHHHHHHHHHCEEEE------------ECCCCCHHHHH T ss_conf 8985687758798568721799999859998956650-0038899999997162698------------58988999999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHC---CCCCHHHH-HHHHHHHHC Q ss_conf 9999984498999999999999999838---99998999-999999861 Q gi|254780767|r 338 RWIERLSQDTLQRRAMLHGFENLWDRMN---TKKPAGHM-AAEIVLQVL 382 (383) Q Consensus 338 ~~~~~ll~d~~~r~~~~~~~~~~~~~Lg---~~~~a~~~-AA~~I~~~L 382 (383) +++.+++.|++. ++++++.+++++++. .+|+++++ .++.|.++| T Consensus 431 ~ai~~vl~d~~~-~~yr~~a~~l~~~~~~a~~~~G~s~~~~~~~v~~~~ 478 (482) T 2pq6_A 431 KLINEVIAGDKG-KKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478 (482) T ss_dssp HHHHHHHTSHHH-HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHTT T ss_pred HHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 999999769728-999999999999999986279948999999999998 No 31 >2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* Probab=98.53 E-value=1.2e-06 Score=62.34 Aligned_cols=301 Identities=9% Similarity=0.034 Sum_probs=146.6 Q ss_pred CEEEEEECCCCHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHC-----CCEEEECHHHCCEEEHHHHHHHHHHHHHHH Q ss_conf 459999768214789-99999999973899839999717899947-----880650444531101367466459999999 Q gi|254780767|r 4 LKIAVIAGEISGDLL-AGDLIKSLKEMVSYPINLVGVGGPSLQKE-----GLVSLFDFSELSVIGIMQVVRHLPQFIFRI 77 (383) Q Consensus 4 mki~i~aGE~SGD~~-~a~li~~Lk~~~~~~~~~~giGG~~m~~~-----G~~~~~~~~~l~v~G~~evl~~~~~~~~~~ 77 (383) |||+|+.-..=||+. ...++++||+.+| +.++.-++.+..++. .++.++....- . +.-......++... T Consensus 1 MKILiir~~~iGD~i~~~p~i~~Lk~~~P-~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~---~-~~~~~~~~~~~~~~ 75 (326) T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIP-GIKFDWVVEEGFAQIPSWHAAVERVIPVAIR---R-WRKAWFSAPIKAER 75 (326) T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHST-TCEEEEEEEGGGTHHHHTSTTEEEEEEECHH---H-HHTTTTSHHHHHHH T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHCCCCCEEEEECCC---C-CCCCCCCCHHHHHH T ss_conf 97999928980899999999999998789-9989999897589998519983589996640---0-02344421368999 Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCC---C--CC-----CCCHHHHHHHHHHHCCCC Q ss_conf 9998610012888689851177657999986630134631111002211---0--03-----663557999998640156 Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVW---A--WR-----EGRARKMCAYINQVISIL 147 (383) Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvW---A--Wr-----~~R~k~~~~~~d~~~~if 147 (383) ..+.+.++..++|++|-.+. +.+.+........+.+..+.-.-.-| . +. ..+.....++.+.+...+ T Consensus 76 ~~~~~~l~~~~~d~~i~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (326) T 2gt1_A 76 KAFREALQAKNYDAVIDAQG---LVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNRKHHIAKQQHAVERTRELFAKSL 152 (326) T ss_dssp HHHHHHHHHSBCSEEEECSC---CHHHHHHTGGGSBSCEEEECTTTSSSGGGGGGCSEEECCCSSSCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCEEEECCC---CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 99999971468888998864---067789999863021012354423442101012444454103779999988653203 Q ss_pred CCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCC--CHHHHHHHHHHCCC Q ss_conf 7742232002553147638821122100135588897618765565059985387430123051--11899987640273 Q gi|254780767|r 148 PFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILP--FFESAVASLVKRNP 225 (383) Q Consensus 148 pFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP--~~l~~~~~l~~~~~ 225 (383) +. +.................... ...+.+.+.||+.... +.+| .+.+.++.+.++.+ T Consensus 153 ~~------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~~~~~~~~~--k~wp~~~~~~l~~~l~~~~~ 211 (326) T 2gt1_A 153 GY------------------SKPQTQGDYAIAQHFLTNLPT-DAGEYAVFLHATTRDD--KHWPEEHWRELIGLLADSGI 211 (326) T ss_dssp TC------------------CCCSSCCCCCCHHHHHTTCCT-TTTSEEEEECCCSSGG--GSCCHHHHHHHHHHTTTTCC T ss_pred CC------------------CCCCCCHHHHHHHHHHHHCCC-CCCCEEEEECCCCCCC--CCCCHHHHHHHHHHHHHCCC T ss_conf 55------------------666640215666899874544-6687599933666776--77999999999999986288 Q ss_pred CCEEEECCCCCHHHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHHHHCCC-HHHHHHHHHHCCCEEEECCC-CCCEEE Q ss_conf 512620166336889999996048885055--20552035788763552331-15668887627530254057-741000 Q gi|254780767|r 226 FFRFSLVTVSSQENLVRCIVSKWDISPEII--IDKEQKKQVFMTCNAAMAAS-GTVILELALCGIPVVSIYKS-EWIVNF 301 (383) Q Consensus 226 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~l~~sd~ai~~S-GTaTLE~al~g~P~IV~Yk~-~~lt~~ 301 (383) .. +++...++.++..+......+ ..++. ..-.+.-.+++.||+.|+.. |.+. =++++|+|+|++|-. ++-.|. T Consensus 212 ~~-~l~~g~~~e~~~~~~i~~~~~-~i~l~~~~sl~el~~li~~a~l~I~~Dtg~~H-lAaa~~~p~i~lfg~t~p~~~~ 288 (326) T 2gt1_A 212 RI-KLPWGAPHEEERAKRLAEGFA-YVEVLPKMSLEGVARVLAGAKFVVSVDTGLSH-LTAALDRPNITVYGPTDPGLIG 288 (326) T ss_dssp EE-EECCSSHHHHHHHHHHHTTCT-TEEECCCCCHHHHHHHHHTCSEEEEESSHHHH-HHHHTTCCEEEEESSSCHHHHC T ss_pred CC-CCCCCCHHHHHHHHHHHHCCC-EEEECCCCCHHHHHHHHHCCCEEEECCCHHHH-HHHHCCCCEEEEECCCCHHHHC T ss_conf 52-014687788999999863355-16632752178999999659799989875999-9998699989998899998708 Q ss_pred EEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCH Q ss_conf 0102467610230244078426124205489899999999984498 Q gi|254780767|r 302 FIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDT 347 (383) Q Consensus 302 i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~ 347 (383) - ...... ++... .-=-.+.+++.+.+.+.+.++.. T Consensus 289 P---~~~~~~----~~~~~----~~~~~~i~~~~V~~~~~~~l~~~ 323 (326) T 2gt1_A 289 G---YGKNQM----VCRAP----GNELSQLTANAVKQFIEENAEKA 323 (326) T ss_dssp C---CSSSEE----EEECG----GGCGGGCCHHHHHHHHHHTTTTC T ss_pred C---CCCCEE----EEECC----CCCCCCCCHHHHHHHHHHHHHHH T ss_conf 8---999879----99899----97604599999999999998873 No 32 >2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A* Probab=98.49 E-value=9.5e-05 Score=49.87 Aligned_cols=177 Identities=10% Similarity=0.036 Sum_probs=83.9 Q ss_pred HCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHH Q ss_conf 61876556505998538743012305111899987640273512620166336889999996048885055205520357 Q gi|254780767|r 185 QRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQV 264 (383) Q Consensus 185 ~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 264 (383) .+........+.+.-||...-.......+..+.... .......+.... ....-.....+...+..+.. .....+. T Consensus 264 ~l~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~l~~~~~~~~~~~v~~~~-~~pq~~~ 338 (456) T 2c1x_A 264 WLKERKPTSVVYISFGTVTTPPPAEVVALSEALEAS---RVPFIWSLRDKA-RVHLPEGFLEKTRGYGMVVP-WAPQAEV 338 (456) T ss_dssp HHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHH---TCCEEEECCGGG-GGGSCTTHHHHHTTTEEEES-CCCHHHH T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEEECCC-CCCCCHHHHHCCCCCCCCCC-CCCCHHH T ss_conf 676404554303541233221035899999999844---775489991576-46686455421111123552-4683687 Q ss_pred H--HHHHHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEEECC-CCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHH Q ss_conf 8--876355233115668-88762753025405774100001024-6761023024407842612420548989999999 Q gi|254780767|r 265 F--MTCNAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFIFYI-KTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWI 340 (383) Q Consensus 265 l--~~sd~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~~li-k~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~ 340 (383) + ..+++.|+-.|..|. |+...|+|||++--.. =.....+.+ ..--+|+. +=-+++|+++|.+++ T Consensus 339 l~~p~~~~fItHGG~gs~~eal~~GVP~l~~P~~~-DQ~~na~rv~~~lG~G~~-----------l~~~~~t~~~l~~ai 406 (456) T 2c1x_A 339 LAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFG-DQRLNGRMVEDVLEIGVR-----------IEGGVFTKSGLMSCF 406 (456) T ss_dssp HTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHTSCCEEE-----------CGGGSCCHHHHHHHH T ss_pred HCCCCCCEEECCCCCCHHHHHHHCCCCEEECCCHH-HHHHHHHHHHHHCCEEEE-----------ECCCCCCHHHHHHHH T ss_conf 65886255523687447999998599989636422-218999999997083899-----------038983899999999 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHH Q ss_conf 998449899999999999999983----899998999999999 Q gi|254780767|r 341 ERLSQDTLQRRAMLHGFENLWDRM----NTKKPAGHMAAEIVL 379 (383) Q Consensus 341 ~~ll~d~~~r~~~~~~~~~~~~~L----g~~~~a~~~AA~~I~ 379 (383) .++|+|+.++ ++.++.+++++.+ ..+|++.+.+...|- T Consensus 407 ~~vL~~~~y~-~~~~ra~~l~~~~~~a~~~~gss~~~~~~~ie 448 (456) T 2c1x_A 407 DQILSQEKGK-KLRENLRALRETADRAVGPKGSSTENFITLVD 448 (456) T ss_dssp HHHHHSHHHH-HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH T ss_pred HHHHCCCHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 9997095899-99999999999999870599878999999999 No 33 >2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A* Probab=98.43 E-value=0.00013 Score=48.93 Aligned_cols=355 Identities=13% Similarity=0.073 Sum_probs=153.7 Q ss_pred CEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCH------------HHHHCCCEE-EECHHHCCE---E---EH Q ss_conf 45999976821478999-9999999738998399997178------------999478806-504445311---0---13 Q gi|254780767|r 4 LKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGP------------SLQKEGLVS-LFDFSELSV---I---GI 63 (383) Q Consensus 4 mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~------------~m~~~G~~~-~~~~~~l~v---~---G~ 63 (383) +.|.++.=-..||+... .|.++|.++ ++++.+..+..+ ......... ..++.+-.. . .+ T Consensus 10 ~hi~~~p~P~~GH~~P~l~la~~L~~r-GH~V~vt~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (463) T 2acv_A 10 SELIFIPAPGIGHLASALEFAKLLTNH-DKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEVEPPPQELLKSP 88 (463) T ss_dssp EEEEEECCSSTTTHHHHHHHHHHHHHT-CTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCCCCCCGGGGGSH T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHCH T ss_conf 838893875186899999999999977-9985999981786304467752332236789747998898888713333078 Q ss_pred HH-HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC-------------------- Q ss_conf 67-466459999999999861001288868985117765799998663013463111100-------------------- Q gi|254780767|r 64 MQ-VVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC-------------------- 122 (383) Q Consensus 64 ~e-vl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~-------------------- 122 (383) .+ ....+.......+.+.+.+...+||++|.-.+-.+.+.+|..+ ++|.+.+.+ T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iv~d~~~~~~~~~a~~l-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (463) T 2acv_A 89 EFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEF-----GIPSYLFLTSNVGFLSLMLSLKNRQIEEV 163 (463) T ss_dssp HHHHHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHT-----TCCEEEEESSCHHHHHHHHHGGGSCTTCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH-----CCCCEEECCCCHHHHHHHHHHHHCCCCCC T ss_conf 9999999999999999999970548986999837118899999994-----89953320542467789987764166676 Q ss_pred -------------CC---CCCCCCCCH---------HHHHHHHHHH----------------------CCCCCCCHHHHH Q ss_conf -------------22---110036635---------5799999864----------------------015677422320 Q gi|254780767|r 123 -------------PS---VWAWREGRA---------RKMCAYINQV----------------------ISILPFEKEVMQ 155 (383) Q Consensus 123 -------------Pq---vWAWr~~R~---------k~~~~~~d~~----------------------~~ifpFE~~~f~ 155 (383) +. .|.++.... ....+..... ...+++....+. T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (463) T 2acv_A 164 FDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYA 243 (463) T ss_dssp CCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTTSCCEEE T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 65446765434564322101333211232044036789999999732044335441766556677664202356786456 Q ss_pred CCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHH-HCCCHHHHHHHHHHCCCCCEEEECCC Q ss_conf 02553147638821122100135588897618765565059985387430123-05111899987640273512620166 Q gi|254780767|r 156 RLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYK-ILPFFESAVASLVKRNPFFRFSLVTV 234 (383) Q Consensus 156 k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~-~lP~~l~~~~~l~~~~~~~~~~i~~~ 234 (383) . +..+...|-+.... ......+.............+.+.-|+....+.. .+..+..+...+ + ..+++... T Consensus 244 ~--~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~ 314 (463) T 2acv_A 244 V--GPLLDLKGQPNPKL--DQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHS----G-VRFLWSNS 314 (463) T ss_dssp C--CCCCCSSCCCBTTB--CHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHH----T-CEEEEECC T ss_pred C--CCCCCCCCCCCCCC--CCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC----C-CEEEEEEC T ss_conf 6--87404676555666--66673789999874245530355236531258999999999999863----7-51899834 Q ss_pred CCHH---HHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEE-ECCCC Q ss_conf 3368---89999996048885055205520-3578876355233115668-88762753025405774100001-02467 Q gi|254780767|r 235 SSQE---NLVRCIVSKWDISPEIIIDKEQK-KQVFMTCNAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFI-FYIKT 308 (383) Q Consensus 235 ~~~~---~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~-~lik~ 308 (383) .... ....... ....+..+.....+. ..++..|++.|+-.|-.|. |+...|+|||++--.. =....+ |++.. T Consensus 315 ~~~~~~~~~~~~~~-~~~~~~~i~~~~pq~~~l~~p~~~~fItHGG~~S~~Eal~~GVPml~~P~~~-DQ~~nA~rlve~ 392 (463) T 2acv_A 315 AEKKVFPEGFLEWM-ELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYA-EQQLNAFRLVKE 392 (463) T ss_dssp CCGGGSCTTHHHHH-HHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCST-THHHHHHHHHHT T ss_pred CCCCCCCCCHHHHH-CCCCCEEEEEECCHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCEEECCCHH-HHHHHHHHHHHH T ss_conf 76445665314441-3677328997456678863886438999478478999998699989346221-008899999986 Q ss_pred CCEEEEHHHCCCCCCCHHH--CCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHCC Q ss_conf 6102302440784261242--054898999999999844-9899999999999999983899998999999-9998619 Q gi|254780767|r 309 WTCALPNLIVDYPLVPEYF--NSMIRSEALVRWIERLSQ-DTLQRRAMLHGFENLWDRMNTKKPAGHMAAE-IVLQVLG 383 (383) Q Consensus 309 ~~i~LpNii~~~~ivPEli--Q~~~~~~~i~~~~~~ll~-d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~-~I~~~Lg 383 (383) .-+|+- +-++.- ...+|++.|.+++.+++. |+.+|++..+--+.+++-... |++|+.+-+ .|.++-| T Consensus 393 ~g~G~~-------l~~~~~~~~~~~t~~~l~~av~~vl~~~~~~r~~a~~l~~~~r~a~~~-gGss~~~~~~~i~~~~~ 463 (463) T 2acv_A 393 WGVGLG-------LRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVD-GGSSLISVGKLIDDITG 463 (463) T ss_dssp SCCEEE-------SCSSCCTTCCCCCHHHHHHHHHHHTCTTCTHHHHHHHHHHHHHHHTST-TSHHHHHHHHHHHHHHC T ss_pred CCCEEE-------EECCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCC T ss_conf 182688-------405321467837699999999999738899999999999999998427-99489999999997039 No 34 >2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Probab=98.23 E-value=1.4e-05 Score=55.37 Aligned_cols=243 Identities=16% Similarity=0.155 Sum_probs=111.6 Q ss_pred CCCCEEEEEECCC-----------------CHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEH Q ss_conf 9874599997682-----------------14789999999999738998399997178999478806504445311013 Q gi|254780767|r 1 MNSLKIAVIAGEI-----------------SGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGI 63 (383) Q Consensus 1 m~~mki~i~aGE~-----------------SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~ 63 (383) |++|||.++...- ..+.+...|.++|.++ +.++.+++-+++.-... .+.+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~pP~~~GG~E~~v~~La~~L~~~-GH~V~v~~~~~~~~~~~---------~~~~~~~ 70 (342) T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLEL-GHEVFLLGAPGSPAGRP---------GLTVVPA 70 (342) T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHT-TCEEEEESCTTSCCCST---------TEEECSC T ss_pred CCCCEEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCC---------CCCCCCC T ss_conf 9973799976665577777676698999885999999999999976-99899992599876677---------6300684 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH Q ss_conf 67466459999999999861001288868985117765799998663013463111100221100366355799999864 Q gi|254780767|r 64 MQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQV 143 (383) Q Consensus 64 ~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~ 143 (383) . . ..++.+.+++.+||+|.+= ++...+. + .+ ..++|+++-.--..|.+.+ + T Consensus 71 ~----~-------~~~l~~~l~~~~~DIVH~h-~~~~~~~-~---~~-~~~~~~v~~~~~~~~~~~~------------~ 121 (342) T 2iuy_A 71 G----E-------PEEIERWLRTADVDVVHDH-SGGVIGP-A---GL-PPGTAFISSHHFTTRPVNP------------V 121 (342) T ss_dssp C----S-------HHHHHHHHHHCCCSEEEEC-SSSSSCS-T---TC-CTTCEEEEEECSSSBCSCC------------T T ss_pred C----H-------HHHHHHHHHHCCCCEEEEC-CCCHHHH-H---HH-CCCCEEEEECCCCCCCCCH------------H T ss_conf 3----1-------9999999987799999988-8213579-9---85-5597099952466544223------------5 Q ss_pred CCCCCCCHH-HHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHH Q ss_conf 015677422-3200255314763882112210013558889761876556505998538743012305111899987640 Q gi|254780767|r 144 ISILPFEKE-VMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVK 222 (383) Q Consensus 144 ~~ifpFE~~-~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~ 222 (383) .+.+.-+.. .+.. ..-++..+.|++-.... .. .......++.+ ++-|. -..-+. ...++.+++.. T Consensus 122 ~~~~~~~~~~~~~~-~~~~~~vI~ngv~~~~~--~~------~~~~~~~~~~i-~~~~~-~~~~k~-~~~li~~~~~~-- 187 (342) T 2iuy_A 122 GCTYSSRAQRAHCG-GGDDAPVIPIPVDPARY--RS------AADQVAKEDFL-LFMGR-VSPHKG-ALEAAAFAHAC-- 187 (342) T ss_dssp TEEESCHHHHHHTT-CCTTSCBCCCCBCGGGS--CC------STTCCCCCSCE-EEESC-CCGGGT-HHHHHHHHHHH-- T ss_pred HHHHHHHHHHHHHC-CCCCEEEECCCCCHHHC--CC------CCCCCCCCCEE-EEEEC-CCCCCC-HHHHHHHHHHC-- T ss_conf 78877999998626-78888998898688877--88------65556778789-99972-230001-35788987623-- Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHHHHCC---------------CHHHHHHHHHH Q ss_conf 2735126201663368899999960488850552--055203578876355233---------------11566888762 Q gi|254780767|r 223 RNPFFRFSLVTVSSQENLVRCIVSKWDISPEIII--DKEQKKQVFMTCNAAMAA---------------SGTVILELALC 285 (383) Q Consensus 223 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~l~~sd~ai~~---------------SGTaTLE~al~ 285 (383) +.++++.................+....... ...+..+.+..+|..+.. .|.+.+|++.+ T Consensus 188 ---~~~l~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~s~~Egfg~~~lEAma~ 264 (342) T 2iuy_A 188 ---GRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVS 264 (342) T ss_dssp ---TCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHT T ss_pred ---CCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC T ss_conf ---85244403454310337999974785799722575205777777788765544302345664456776047779975 Q ss_pred CCCEEEECCCCCCEE Q ss_conf 753025405774100 Q gi|254780767|r 286 GIPVVSIYKSEWIVN 300 (383) Q Consensus 286 g~P~IV~Yk~~~lt~ 300 (383) |+|.| +...+.+.. T Consensus 265 G~PvI-~s~~gg~~e 278 (342) T 2iuy_A 265 GTPVV-GTGNGCLAE 278 (342) T ss_dssp TCCEE-ECCTTTHHH T ss_pred CCEEE-EECCCCHHH T ss_conf 96299-908997688 No 35 >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A* Probab=98.14 E-value=0.0003 Score=46.57 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=98.9 Q ss_pred HHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCC-HHHHHHHHHHHCCCCCE-EEEEC-- Q ss_conf 976187655650599853874301230511189998764027351262016633-68899999960488850-55205-- Q gi|254780767|r 183 NKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSS-QENLVRCIVSKWDISPE-IIIDK-- 258 (383) Q Consensus 183 ~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~-i~~~~-- 258 (383) +...+++++..+.+.+ .+ ..+..|-++++-.++.++.|+-.+++...+. .....+......+...+ +.+.. T Consensus 368 r~~~~l~~~~i~f~~~----n~-~~Ki~p~~~~~w~~IL~~vp~s~L~l~~~~~~~~~~~~~~~~~~g~~~~ri~f~~~~ 442 (568) T 2vsy_A 368 RTQCGLPEQGVVLCCF----NN-SYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKL 442 (568) T ss_dssp TGGGTCCTTSCEEEEC----CC-GGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCC T ss_pred CCCCCCCCCCCEEEEC----CC-CCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHCCCC T ss_conf 2123999888378752----78-666893499999999864156448996486156789999998605542011222653 Q ss_pred --CCCHHHHHHHHHHHCC----CHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCC Q ss_conf --5203578876355233----1156688876275302540577410000102467610230244078426124205489 Q gi|254780767|r 259 --EQKKQVFMTCNAAMAA----SGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIR 332 (383) Q Consensus 259 --~~~~~~l~~sd~ai~~----SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~ 332 (383) .+....++.+|+++-+ .||.|+|+..+|+|.|...-..+.+..-.-++ ..+| .||+|-. + T Consensus 443 ~~~~~l~~~~~~Di~LDtfp~~g~tt~~eal~~GvPvvTl~g~~~~~R~~as~L--~~~g----------l~e~ia~--~ 508 (568) T 2vsy_A 443 PHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLN--HHLG----------LDEMNVA--D 508 (568) T ss_dssp CHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHH--HHHT----------CGGGBCS--S T ss_pred CHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHH--HHCC----------CCCCCCC--C T ss_conf 337899998358689859897975879999977999897778984054899999--9779----------9500369--9 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 8999999999844989999999999999998 Q gi|254780767|r 333 SEALVRWIERLSQDTLQRRAMLHGFENLWDR 363 (383) Q Consensus 333 ~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~ 363 (383) .++-.+...++-+|++.+.++++.+++-+.. T Consensus 509 ~~~Yv~~a~~la~d~~~l~~lr~~lr~~~~~ 539 (568) T 2vsy_A 509 DAAFVAKAVALASDPAALTALHARVDVLRRA 539 (568) T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 9999999999964999999999999998863 No 36 >2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Probab=98.06 E-value=1.2e-05 Score=55.76 Aligned_cols=306 Identities=14% Similarity=0.113 Sum_probs=142.6 Q ss_pred CCEEEEEECCC------CHHHHHHHHHHHHHHHCCCCEEEEEECCH---H-HHHCCCEEEECHHHCCEEEHHHHHHHHHH Q ss_conf 74599997682------14789999999999738998399997178---9-99478806504445311013674664599 Q gi|254780767|r 3 SLKIAVIAGEI------SGDLLAGDLIKSLKEMVSYPINLVGVGGP---S-LQKEGLVSLFDFSELSVIGIMQVVRHLPQ 72 (383) Q Consensus 3 ~mki~i~aGE~------SGD~~~a~li~~Lk~~~~~~~~~~giGG~---~-m~~~G~~~~~~~~~l~v~G~~evl~~~~~ 72 (383) ..||.++.-.. .|-..+-++.++|.++ +.++++...+.+ . ++......+........... ..+ T Consensus 46 ~kri~llip~~~~~~~~GGi~t~l~l~~~L~~~-G~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----- 118 (413) T 2x0d_A 46 GKRLNLLVPSINQEHMFGGISTALKLFEQFDNK-KFKKRIILTDATPNPKDLQSFKSFKYVMPEEDKDFAL-QIV----- 118 (413) T ss_dssp SCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTT-TCEEEEEESSCCCCHHHHGGGTTSEECCTTCCCCCSE-EEE----- T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCHHHCCCCCEEEEECCCCCCHHH-HHH----- T ss_conf 987999965589999888899999999999977-9948999807999713320046357740565552137-776----- Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHH-HHH---HHHHHHHHHHCCCCCCEEEE---CCCCCCCCCCCHHHHHHH--HHHH Q ss_conf 99999999861001288868985117-765---79999866301346311110---022110036635579999--9864 Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIVDNP-DFT---HRVAKRVRKKMPNLPIINYV---CPSVWAWREGRARKMCAY--INQV 143 (383) Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~iD~p-gFn---l~lak~lkk~~~~ipvi~yv---~PqvWAWr~~R~k~~~~~--~d~~ 143 (383) .........+...++|+++.-+.+ .+. +.......-.....+.+|+| .|-...|+..+...-+.| .+.. T Consensus 119 --~~~~~~~~~~~~~~~Dvviat~w~~a~~~~~~~~~~~~~~~~~~~~~~y~iq~~e~~f~~~~~~~~~a~~~y~~~~~~ 196 (413) T 2x0d_A 119 --PFNDRYNRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQ 196 (413) T ss_dssp --ECSCCTTCCEEECTTEEEEECSHHHHHHHHHHHHHHHHHHTCCCCCEEEEECSCGGGGSCSSHHHHHHHHTTSCCSCE T ss_pred --HHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCE T ss_conf --666899986431689989993767799999987753330332576389996557222044636799999998469986 Q ss_pred CCCC--CCCHHHHHCCCC--CCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHH Q ss_conf 0156--774223200255--314763882112210013558889761876556505998538743012305111899987 Q gi|254780767|r 144 ISIL--PFEKEVMQRLGG--PPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVAS 219 (383) Q Consensus 144 ~~if--pFE~~~f~k~~~--~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~ 219 (383) ++++ ....+++..... .++.++-+++ | ...+... .....++.+.++.|- ...-++.+..+++++.. T Consensus 197 i~~~~s~~~~~~~~~~~~~~~~~~~i~n~i-d-------~~~~~~~-~~~~~~~~~il~~gr-~~~~kk~~~~li~Al~~ 266 (413) T 2x0d_A 197 IAVFNSELLKQYFNNKGYNFTDEYFFQPKI-N-------TTLKNYI-NDKRQKEKIILVYGR-PSVKRNAFTLIVEALKI 266 (413) T ss_dssp EEEEESHHHHHHHHHHTCCCSEEEEECCCC-C-------HHHHTTT-TSCCCCCSEEEEEEC-TTCGGGCHHHHHHHHHH T ss_pred EEEECCHHHHHHHHHHCCCCCCEEEECCCC-C-------HHHCCCC-CCCCCCCCEEEEEEE-ECCCCCCHHHHHHHHHH T ss_conf 999787999999998669978769968999-9-------8870878-642345768999975-16544346999999999 Q ss_pred HHHCCCC---CEEEECCCCCHHHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCC Q ss_conf 6402735---1262016633688999999604888505520----552035788763552331-----156688876275 Q gi|254780767|r 220 LVKRNPF---FRFSLVTVSSQENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS-----GTVILELALCGI 287 (383) Q Consensus 220 l~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~ 287 (383) +.+..++ +.++..... ... ...+...++... .++..++++.||+.+..| |-+.||++.+|+ T Consensus 267 l~~~~~~~~~~~iv~~G~~-~~~------~~l~~~~~v~~lG~v~~~el~~l~~~adi~v~pS~~E~fgl~~lEAma~G~ 339 (413) T 2x0d_A 267 FVQKYDRSNEWKIISVGEK-HKD------IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGL 339 (413) T ss_dssp HHHHCTTGGGCEEEEEESC-CCC------EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTC T ss_pred HHHHCCCCCCEEEEECCCC-HHH------HHCCCCCCEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHCCC T ss_conf 8864887761899955750-567------761888617874887989999999867899981356788669999998698 Q ss_pred CEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHH Q ss_conf 302540577410000102467610230244078426124205489899999999984498999999 Q gi|254780767|r 288 PVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAM 353 (383) Q Consensus 288 P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~ 353 (383) |.| +...+.... ...-... -++ ...+++++++++.+++++++.++.. T Consensus 340 PVV-~s~~~~~~~----~~~~~~g---------~l~-----~~~d~~~la~~i~~l~~~~~~~~~~ 386 (413) T 2x0d_A 340 RVI-TNKYENKDL----SNWHSNI---------VSL-----EQLNPENIAETLVELCMSFNNRDVD 386 (413) T ss_dssp EEE-EECBTTBCG----GGTBTTE---------EEE-----SSCSHHHHHHHHHHHHHHTC----- T ss_pred CEE-EECCCCCCE----EEECCCE---------EEE-----CCCCHHHHHHHHHHHHCCCCCHHHH T ss_conf 299-958998200----3568947---------998-----9999999999999998398669999 No 37 >2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Probab=98.01 E-value=4.1e-05 Score=52.26 Aligned_cols=215 Identities=11% Similarity=0.107 Sum_probs=123.7 Q ss_pred CCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC-H----HHHHHHHHHHCCCCCCCHHHHHCCCCCC Q ss_conf 2888689851177657999986630134631111002211003663-5----5799999864015677422320025531 Q gi|254780767|r 87 SKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGR-A----RKMCAYINQVISILPFEKEVMQRLGGPP 161 (383) Q Consensus 87 ~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R-~----k~~~~~~d~~~~ifpFE~~~f~k~~~~~ 161 (383) ...|+++.-..+... ....+++..++.+++|++..-.-++...+ + +.+.+.+|.+++.-++..+.+... + + T Consensus 123 ~~~dvv~~~~~~~~~--~~~~~~~~~p~~~~vy~~~d~~~~~~~~~~~~~~e~~~~~~aD~vi~~s~~~~~~~~~~-~-~ 198 (406) T 2hy7_A 123 RESDVIVFESGIAVA--FIELAKRVNPAAKLVYRASDGLSTINVASYIEREFDRVAPTLDVIALVSPAMAAEVVSR-D-N 198 (406) T ss_dssp HHCSEEEEESSGGGG--GHHHHHHHCTTSEEEEEESSCHHHHTCCHHHHHHHHHHGGGCSEEEESCGGGGGGCSCS-T-T T ss_pred CCCCEEEEECCCCHH--HHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEECCHHHHHHHHCC-C-C T ss_conf 669989990687177--89999732888429999436200144048999999999850999998999999986418-9-8 Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHH Q ss_conf 47638821122100135588897618765565059985387430123051118999876402735126201663368899 Q gi|254780767|r 162 TTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLV 241 (383) Q Consensus 162 ~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~ 241 (383) ++++.|-. |. ..+..............+.-|+.. ..++++..+.++.|+.+|++........ T Consensus 199 v~vipnGv-d~-------~~f~~~~~~~~~~~~~~~~~g~~~--------~~~~~l~~l~~~~p~~~l~ivG~g~~~~-- 260 (406) T 2hy7_A 199 VFHVGHGV-DH-------NLDQLGDPSPYAEGIHAVAVGSML--------FDPEFFVVASKAFPQVTFHVIGSGMGRH-- 260 (406) T ss_dssp EEECCCCB-CT-------THHHHHCSCSCCSSEEEEEECCTT--------BCHHHHHHHHHHCTTEEEEEESCSSCCC-- T ss_pred EEEECCCC-CH-------HHCCCCCCCCCCCCCEEEEECCHH--------HHHHHHHHHHHHCCCCEEEEEECCCCCC-- T ss_conf 99968978-96-------665777787655674589856146--------5699999999878991899982462224-- Q ss_pred HHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC------------HHHHHHHHHHCCCEEEECCCCCCEEEEEEC Q ss_conf 9999604888505520----552035788763552331------------156688876275302540577410000102 Q gi|254780767|r 242 RCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS------------GTVILELALCGIPVVSIYKSEWIVNFFIFY 305 (383) Q Consensus 242 ~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S------------GTaTLE~al~g~P~IV~Yk~~~lt~~i~~l 305 (383) .....++... .++....++.+|+++..| |...+|++.+|+|.| +.....+ T Consensus 261 ------~~~~~~V~~~g~~~~~~l~~~~~~adv~v~P~~~~~~~~~~~~~~~kl~Ea~a~G~PVV-at~~~~~------- 326 (406) T 2hy7_A 261 ------PGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAV-CPNAVVG------- 326 (406) T ss_dssp ------TTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEE-EEGGGTC------- T ss_pred ------CCCCCEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEE-ECCCCCC------- T ss_conf ------45575599947868999999997598999667665553200157623999997599889-6777766------- Q ss_pred CCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHH Q ss_conf 46761023024407842612420548989999999998449899999 Q gi|254780767|r 306 IKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRA 352 (383) Q Consensus 306 ik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~ 352 (383) +- . .+++-.--+++.++.++.++++|+..+.. T Consensus 327 --------~~------~-~~~~~~~~d~~~la~ai~~~l~~p~~~~~ 358 (406) T 2hy7_A 327 --------PY------K-SRFGYTPGNADSVIAAITQALEAPRVRYR 358 (406) T ss_dssp --------SC------S-SEEEECTTCHHHHHHHHHHHHHCCCCCCS T ss_pred --------CC------C-CCEEECCCCHHHHHHHHHHHHHCCHHHHH T ss_conf --------77------7-52388799999999999999849377877 No 38 >1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* Probab=97.91 E-value=0.0015 Score=41.91 Aligned_cols=145 Identities=12% Similarity=0.145 Sum_probs=82.0 Q ss_pred CEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCC----EEEECCCCCHH---------HHHHHHHH-------HCCCCC Q ss_conf 50599853874301230511189998764027351----26201663368---------89999996-------048885 Q gi|254780767|r 193 KKILLLPGSRAQEIYKILPFFESAVASLVKRNPFF----RFSLVTVSSQE---------NLVRCIVS-------KWDISP 252 (383) Q Consensus 193 ~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~----~~~i~~~~~~~---------~~~~~~~~-------~~~~~~ 252 (383) +.+.+.- .|-.. .+.++..+++...+.+++|+. .++....++.. ..+..... ..+..+ T Consensus 255 ~~~il~v-gRld~-~KGi~~~l~A~~~ll~~~P~~~~~v~lv~~~~~~~~~~~~~~~l~~~l~~lv~~in~~~~~~~~~~ 332 (482) T 1uqt_A 255 VQNIFSV-ERLDY-SKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTP 332 (482) T ss_dssp CEEEEEE-CCBCG-GGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCS T ss_pred CEEEEEC-CCCCH-HHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 5499982-88751-107899999999998759041673899994588755567899999999999998876522578875 Q ss_pred EEEEE----CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCE----EEECCCCCCEEEEEECCCCCCEEEEHHHCC Q ss_conf 05520----552035788763552331-----15668887627530----254057741000010246761023024407 Q gi|254780767|r 253 EIIID----KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPV----VSIYKSEWIVNFFIFYIKTWTCALPNLIVD 319 (383) Q Consensus 253 ~i~~~----~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~----IV~Yk~~~lt~~i~~lik~~~i~LpNii~~ 319 (383) .+... ..+...+++.||+++++| |.+.+|++.+|+|. +|+-..+ |.+-.+.+ T Consensus 333 ~v~~~~~~~~~~l~~ly~~aDv~v~~S~~Eg~~Lv~~Eama~~~p~~~g~lV~S~~~---------------G~~~~l~~ 397 (482) T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFA---------------GAANELTS 397 (482) T ss_dssp EEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTB---------------GGGGTCTT T ss_pred EEECCCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEECCC---------------CCHHHHCC T ss_conf 352158888889876406045999577425788589999982999888518982788---------------86788497 Q ss_pred CCCCCHHHCCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHH Q ss_conf 84261242054898999999999844-98999999999999 Q gi|254780767|r 320 YPLVPEYFNSMIRSEALVRWIERLSQ-DTLQRRAMLHGFEN 359 (383) Q Consensus 320 ~~ivPEliQ~~~~~~~i~~~~~~ll~-d~~~r~~~~~~~~~ 359 (383) --+| +-.+++.+++++.+.|+ +++.|+.+.++..+ T Consensus 398 g~lV-----nP~d~~~~A~ai~~aL~m~~~er~~r~~~~~~ 433 (482) T 1uqt_A 398 ALIV-----NPYDRDEVAAALDRALTMSLAERISRHAEMLD 433 (482) T ss_dssp SEEE-----CTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred EEEE-----CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 0898-----98999999999999973999999999999989 No 39 >3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Probab=97.49 E-value=0.00055 Score=44.82 Aligned_cols=222 Identities=12% Similarity=0.088 Sum_probs=120.1 Q ss_pred HHHHCCCCCCCHHHHHCCCC---CCEEECCCCCCCCCCCC----CCHHHHHHHCCCCCCCCEEEEEECCCCCCHHH---- Q ss_conf 98640156774223200255---31476388211221001----35588897618765565059985387430123---- Q gi|254780767|r 140 INQVISILPFEKEVMQRLGG---PPTTFVGHPLSSSPSIL----EVYSQRNKQRNTPSQWKKILLLPGSRAQEIYK---- 208 (383) Q Consensus 140 ~d~~~~ifpFE~~~f~k~~~---~~~~fVGHPl~d~~~~~----~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~---- 208 (383) .|.+++-=+++.+.|.+.-+ -++.-+|.|-.|..... ......++.++++.++++|+.+|-=|..+... T Consensus 479 ~d~~~~~s~~~~~~~~~~f~~~~~~v~~~G~PR~D~l~~~~~~~~~~~~~~~~~~~~~~kkvILy~PT~R~~~~~~~~~~ 558 (729) T 3l7i_A 479 WDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKY 558 (729) T ss_dssp CSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHSTTCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSS T ss_pred CCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECEEECCCCCCCCHH T ss_conf 89899888899999999838996607783657607875421048999999986699966707999030205665663100 Q ss_pred --HCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf --05111899987640273512620166336889999996048885055--20552035788763552331156688876 Q gi|254780767|r 209 --ILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEII--IDKEQKKQVFMTCNAAMAASGTVILELAL 284 (383) Q Consensus 209 --~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~l~~sd~ai~~SGTaTLE~al 284 (383) ..+..++.+.+..+ .++.+++-.-|.. ............+. ....+.+++|..||+.|+==-.+..|.++ T Consensus 559 ~~~~~~~~~~l~~~l~--~~~~li~k~Hp~~----~~~~~~~~~~~~~~~~~~~~d~~~ll~~sD~lITDYSSv~fd~~~ 632 (729) T 3l7i_A 559 LFELKIDLDNLYKELG--DDYVILLRMHYLI----SNALDLSGYENFAIDVSNYNDVSELFLISDCLITDYSSVMFDYGI 632 (729) T ss_dssp CCCCTTCHHHHHHHHT--TTEEEEECCCHHH----HTTCCCTTCTTTEEECTTCSCHHHHHHTCSEEEESSCTHHHHHGG T ss_pred HHHHHHHHHHHHHHCC--CCCEEEEECCCCH----HHCCCCCCCCCEEEECCCCCCHHHHHHHHCEEEECHHHHHHHHHH T ss_conf 1233667999999758--9948999768232----311443457885871899868999999834999737879999999 Q ss_pred HCCCEEEECCCCCCEEEE-EECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 275302540577410000-1024676102302440784261242054898999999999844989999999999999998 Q gi|254780767|r 285 CGIPVVSIYKSEWIVNFF-IFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDR 363 (383) Q Consensus 285 ~g~P~IV~Yk~~~lt~~i-~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~ 363 (383) ++.| |+.|.-.+=.|.- .|-. |.......-| +++ -+.+.|.+++.....+.+ +..+..++..++ T Consensus 633 l~kP-ii~~~~D~~~Y~~~~rg~---y~d~~~~~pG-~~~-------~~~~eL~~~l~~~~~~~~---~~~~~~~~~~~~ 697 (729) T 3l7i_A 633 LKRP-QFFFAYDIDKYDKGLRGF---YMNYMEDLPG-PIY-------TEPYGLAKELKNLDKVQQ---QYQEKIDAFYDR 697 (729) T ss_dssp GCCC-EEEECTTTTTTTSSCCSB---SSCTTSSSSS-CEE-------SSHHHHHHHHTTHHHHHH---HTHHHHHHHHHH T ss_pred HCCC-EEEECCCHHHHHHHCCCC---CCCHHHCCCC-CEE-------CCHHHHHHHHHHHHHCCH---HHHHHHHHHHHH T ss_conf 7898-999888899986435886---0178782997-768-------989999999972531666---789999999999 Q ss_pred HC--CCCCHHHHHHHHHHHHC Q ss_conf 38--99998999999999861 Q gi|254780767|r 364 MN--TKKPAGHMAAEIVLQVL 382 (383) Q Consensus 364 Lg--~~~~a~~~AA~~I~~~L 382 (383) .. ..|.++++..+.|.+.+ T Consensus 698 ~~~~~dg~~~~ri~~~i~~~~ 718 (729) T 3l7i_A 698 FCSVDNGKASQYIGDLIHKDI 718 (729) T ss_dssp HSTTCCSCHHHHHHHHHHHHH T ss_pred HCCCCCCHHHHHHHHHHHHHH T ss_conf 589989939999999999987 No 40 >2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein structure initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.87.1.8 Probab=97.10 E-value=0.0013 Score=42.42 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=76.8 Q ss_pred EEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC---CHHHHHHHHHHHCCCCCEEEE----ECCCCHHHHHH Q ss_conf 59985387430123051118999876402735126201663---368899999960488850552----05520357887 Q gi|254780767|r 195 ILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS---SQENLVRCIVSKWDISPEIII----DKEQKKQVFMT 267 (383) Q Consensus 195 I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~l~~ 267 (383) ..|+.| |-.+ .+.+..++++++++ ++.++++.... +........+.+... .+|.. ...+..++++. T Consensus 25 ~~l~vg-rl~~-~Kg~~~li~a~~~l----~~~~l~ivG~~~~~~~~~~~~~~l~~~~~-~~V~~~g~~~~~el~~~~~~ 97 (177) T 2f9f_A 25 FWLSVN-RIYP-EKRIELQLEVFKKL----QDEKLYIVGWFSKGDHAERYARKIMKIAP-DNVKFLGSVSEEELIDLYSR 97 (177) T ss_dssp CEEEEC-CSSG-GGTHHHHHHHHHHC----TTSCEEEEBCCCTTSTHHHHHHHHHHHSC-TTEEEEESCCHHHHHHHHHH T ss_pred EEEEEE-CCCC-CCCHHHHHHHHHHC----CCCCEEEEEECCCHHHHHHHHHHHHHHCC-CCEEECCCCCHHHHHHHHHH T ss_conf 999992-5851-20999999999827----89828999857855699999999972589-98999178999999999864 Q ss_pred HHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHH Q ss_conf 63552331-----1566888762753025405774100001024676102302440784261242054898999999999 Q gi|254780767|r 268 CNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIER 342 (383) Q Consensus 268 sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ 342 (383) ||+.+.+| |.+.+|++.+|+|.| +...++...++. . +...+ +. +.+++.+++.+.. T Consensus 98 sd~~i~~s~~e~~~~~~~Eam~~G~pvi-~s~~~~~~e~i~---~-----------~~~g~--~~--~~d~~~l~~~i~~ 158 (177) T 2f9f_A 98 CKGLLCTAKDEDFGLTPIEAMASGKPVI-AVNEGGFKETVI---N-----------EKTGY--LV--NADVNEIIDAMKK 158 (177) T ss_dssp CSEEEECCSSCCSCHHHHHHHHTTCCEE-EESSHHHHHHCC---B-----------TTTEE--EE--CSCHHHHHHHHHH T ss_pred HHCCCCCCHHHCCCCHHHHHHHCCCCEE-EECCCCCHHHHC---C-----------CCEEE--EE--CCCHHHHHHHHHH T ss_conf 3104677422216726999997799689-958998189842---8-----------97799--96--9399999999999 Q ss_pred HHCCHHH Q ss_conf 8449899 Q gi|254780767|r 343 LSQDTLQ 349 (383) Q Consensus 343 ll~d~~~ 349 (383) +++|++. T Consensus 159 ll~~~~~ 165 (177) T 2f9f_A 159 VSKNPDK 165 (177) T ss_dssp HHHCTTT T ss_pred HHCCHHH T ss_conf 9849999 No 41 >2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Probab=96.72 E-value=0.013 Score=35.75 Aligned_cols=140 Identities=14% Similarity=0.085 Sum_probs=73.2 Q ss_pred CCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH--HH Q ss_conf 5565059985387430123051118999876402735126201663368899999960488850552055203578--87 Q gi|254780767|r 190 SQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVF--MT 267 (383) Q Consensus 190 ~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l--~~ 267 (383) .++++|.+=-||-.+.. -..+++.+-.-..+. +..++......... ..+.+..+ ...-...+++ .. T Consensus 19 ~~~~vV~vs~GS~~~~~---~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~-------~~~~~~~~-~~~~p~~~il~~~~ 86 (170) T 2o6l_A 19 GENGVVVFSLGSMVSNM---TEERANVIASALAQI-PQKVLWRFDGNKPD-------TLGLNTRL-YKWIPQNDLLGHPK 86 (170) T ss_dssp TTTCEEEEECCSCCTTC---CHHHHHHHHHHHTTS-SSEEEEECCSSCCT-------TCCTTEEE-ESSCCHHHHHTSTT T ss_pred CCCCEEEECCCCCCCCC---CHHHHHHHHHHHHHC-CCCEEEEECCCCCC-------CCCCCEEE-EEECCHHHHHCCCC T ss_conf 99968999079757588---899999999999858-99669985787733-------47987179-88676355423865 Q ss_pred HHHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCC Q ss_conf 6355233115668-887627530254057741000010246761023024407842612420548989999999998449 Q gi|254780767|r 268 CNAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQD 346 (383) Q Consensus 268 sd~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d 346 (383) |++.|+-.|..|+ |+...|+|++++--. +=.....+.+.-.-+|. .+ -.+++|++.|.+++.++++| T Consensus 87 ~~~~I~HGG~~t~~eal~~GvP~l~iP~~-~DQ~~na~~v~~~G~g~--------~l---~~~~~t~~~l~~ai~~ll~d 154 (170) T 2o6l_A 87 TRAFITHGGANGIYEAIYHGIPMVGIPLF-ADQPDNIAHMKARGAAV--------RV---DFNTMSSTDLLNALKRVIND 154 (170) T ss_dssp EEEEEECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHTTTSEE--------EC---CTTTCCHHHHHHHHHHHHHC T ss_pred CEEEEECCCCHHHHHHHHCCCCEEECCCH-HHHHHHHHHHHHCCCEE--------EE---CCCCCCHHHHHHHHHHHHCC T ss_conf 01898627730243677427787845850-21799999999879589--------80---50578999999999999789 Q ss_pred HHHHHHH Q ss_conf 8999999 Q gi|254780767|r 347 TLQRRAM 353 (383) Q Consensus 347 ~~~r~~~ 353 (383) +.++++. T Consensus 155 ~~y~~~a 161 (170) T 2o6l_A 155 PSYKENV 161 (170) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 42 >2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A* Probab=96.68 E-value=0.01 Score=36.52 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=59.5 Q ss_pred EEECCCCHHHHHH--HHHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEEECC-CCCCEEEEHHHCCCCCCCHHHCCC Q ss_conf 5205520357887--6355233115668-88762753025405774100001024-676102302440784261242054 Q gi|254780767|r 255 IIDKEQKKQVFMT--CNAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFIFYI-KTWTCALPNLIVDYPLVPEYFNSM 330 (383) Q Consensus 255 ~~~~~~~~~~l~~--sd~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~~li-k~~~i~LpNii~~~~ivPEliQ~~ 330 (383) +.......++|.+ +++.|+-.|-.|. |+...|+|||++--.. =.....+.+ ...-+|+ ++-.++ +.. T Consensus 343 v~~w~PQ~~iL~hp~v~~fVtHGG~~s~~Eal~~GVP~v~~P~~~-DQ~~na~rv~e~~G~Gv-~l~~~~-------~~~ 413 (480) T 2vch_A 343 IPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYA-EQKMNAVLLSEDIRAAL-RPRAGD-------DGL 413 (480) T ss_dssp EESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHTTCCEE-CCCCCT-------TSC T ss_pred EEEECCCHHHHCCCCCCEEECCCCCHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHHCEEEE-EEECCC-------CCC T ss_conf 986458389876881016851587418999998599989534202-35788999877330699-963488-------895 Q ss_pred CCHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 898999999999844989---99999999999999838999989999 Q gi|254780767|r 331 IRSEALVRWIERLSQDTL---QRRAMLHGFENLWDRMNTKKPAGHMA 374 (383) Q Consensus 331 ~~~~~i~~~~~~ll~d~~---~r~~~~~~~~~~~~~Lg~~~~a~~~A 374 (383) +|+++|.+++.+++.|++ +|++..+=-+.+++-+..+| +++++ T Consensus 414 ~t~e~l~~ai~~vl~d~~~~~~r~~a~~l~~~~~~A~~~~G-ss~~~ 459 (480) T 2vch_A 414 VRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDG-TSTKA 459 (480) T ss_dssp CCHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTTS-HHHHH T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC-CHHHH T ss_conf 97999999999996695589999999999999999850799-58999 No 43 >3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3nch_A 3naz_A 3o3c_A* Probab=95.49 E-value=0.037 Score=32.77 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=53.8 Q ss_pred CCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHH-CCCCCCCHHH-CCCCC Q ss_conf 2035788763552331-----156688876275302540577410000102467610230244-0784261242-05489 Q gi|254780767|r 260 QKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLI-VDYPLVPEYF-NSMIR 332 (383) Q Consensus 260 ~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii-~~~~ivPEli-Q~~~~ 332 (383) ..+++++.||+.+..| |-+.||++.+|+|.|+- .++.+.-++...+... +-. .|=.|++--- ..+-. T Consensus 511 ~y~~~~aGaDl~V~PS~YEPfGlt~LEAma~G~P~I~t-~~gGfg~~v~~~~~~~-----~~~~~Gv~v~~r~~~~~~e~ 584 (725) T 3nb0_A 511 DYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITT-NVSGFGSYMEDLIETN-----QAKDYGIYIVDRRFKAPDES 584 (725) T ss_dssp CHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEE-TTBHHHHHHHTTSCHH-----HHHHTTEEEECCSSSCHHHH T ss_pred CHHHHHHCCCEEEECCCCCCCCCHHHHHHHCCCCEEEE-CCCCHHHHHHHHCCCC-----CCCCCCEEEECCCCCCHHHH T ss_conf 19999842877984551147665999998779987983-5874878988751477-----77778769843777887999 Q ss_pred HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHC Q ss_conf 89999999998449-8999999999999999838 Q gi|254780767|r 333 SEALVRWIERLSQD-TLQRRAMLHGFENLWDRMN 365 (383) Q Consensus 333 ~~~i~~~~~~ll~d-~~~r~~~~~~~~~~~~~Lg 365 (383) .+.|++.+..+... ...|..+++..+.+.+.+. T Consensus 585 v~~l~~~l~~~~~~~~~~~~~~r~~~~~ls~~f~ 618 (725) T 3nb0_A 585 VEQLVDYMEEFVKKTRRQRINQRNATEALSDLLD 618 (725) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGB T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999985899999999999999987299 No 44 >2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} Probab=92.64 E-value=0.019 Score=34.64 Aligned_cols=36 Identities=8% Similarity=0.164 Sum_probs=28.9 Q ss_pred CCHHHH-HHHHHHHCCCHHHHH-HHHHHCCCEEEECCC Q ss_conf 203578-876355233115668-887627530254057 Q gi|254780767|r 260 QKKQVF-MTCNAAMAASGTVIL-ELALCGIPVVSIYKS 295 (383) Q Consensus 260 ~~~~~l-~~sd~ai~~SGTaTL-E~al~g~P~IV~Yk~ 295 (383) +..+.+ ..||++|+-+|+.|+ |++.+|+|.|++-+. T Consensus 124 ~~~~~~~~~adlvIshaG~gti~e~l~~~kp~i~vP~~ 161 (224) T 2jzc_A 124 KMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVND 161 (224) T ss_dssp SHHHHHHHHCSCEEESSCHHHHHHHHHTTCCCCEECCS T ss_pred HHHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEEEECC T ss_conf 37899864236888568647999999968998998377 No 45 >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Probab=91.67 E-value=0.091 Score=30.18 Aligned_cols=93 Identities=13% Similarity=0.270 Sum_probs=56.5 Q ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 9874599997-682147899999999997389983999971789994788065044453110136746645999999999 Q gi|254780767|r 1 MNSLKIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 1 m~~mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) |+.|||.|+. |--.|.. .++++++ .+++++.|+.++.-+.+. .+ -+++ |...+. .. T Consensus 3 m~~irigiiG~G~~~~~~----h~~~l~~--~~~~~lvav~d~~~~~~~--~~--a~~~---~~~~~~----------~~ 59 (359) T 3m2t_A 3 LSLIKVGLVGIGAQMQEN----LLPSLLQ--MQDIRIVAACDSDLERAR--RV--HRFI---SDIPVL----------DN 59 (359) T ss_dssp CCCEEEEEECCSHHHHHT----HHHHHHT--CTTEEEEEEECSSHHHHG--GG--GGTS---CSCCEE----------SS T ss_pred CCCCEEEEECCHHHHHHH----HHHHHHH--CCCCEEEEEECCCHHHHH--HH--HHHC---CCCCEE----------CC T ss_conf 536289999171999999----9999983--999589999889999999--99--9884---998531----------89 Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 986100128886898511776579999866301346311 Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) +.+.+.+..||+|+..--|.++..+++.+=++ |++|+ T Consensus 60 ~~~ll~~~~iD~V~I~tp~~~H~~~~~~al~~--Gk~V~ 96 (359) T 3m2t_A 60 VPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSK--GVNVF 96 (359) T ss_dssp HHHHHHHSCCSEEEECSCHHHHHHHHHHHHHT--TCEEE T ss_pred HHHHHCCCCCCEEEECCCHHHHHHHHHHHHHC--CCEEE T ss_conf 99996599999899878635435899999843--98099 No 46 >1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga maritima MSB8} SCOP: c.2.1.3 d.81.1.5 Probab=91.53 E-value=0.1 Score=29.84 Aligned_cols=94 Identities=13% Similarity=0.212 Sum_probs=51.6 Q ss_pred CCCCEEEEEECCCCH-HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 987459999768214-7899999999997389983999971789994788065044453110136746645999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISG-DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 1 m~~mki~i~aGE~SG-D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) |+++||.|+....-| ..| +.+|++. +..+++.|+.++.-+.. +.+ -+++. ... .+.. T Consensus 16 mk~lrigiIG~G~~g~~~h----~~~l~~~-~~~~~l~ai~d~~~~~~--~~~--~~~~~---~~~----------~~~~ 73 (340) T 1zh8_A 16 LRKIRLGIVGCGIAARELH----LPALKNL-SHLFEITAVTSRTRSHA--EEF--AKMVG---NPA----------VFDS 73 (340) T ss_dssp CCCEEEEEECCSHHHHHTH----HHHHHTT-TTTEEEEEEECSSHHHH--HHH--HHHHS---SCE----------EESC T ss_pred CCCCEEEEECCCHHHHHHH----HHHHHHC-CCCEEEEEEECCCHHHH--HHH--HHHCC---CCC----------EECC T ss_conf 6688899995889999999----9999728-99769999989999999--999--99839---983----------5388 Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 986100128886898511776579999866301346311 Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) ..+.+.+..+|+|+..--|.++..+++.+=+. |++|+ T Consensus 74 ~~ell~~~~iD~V~I~tp~~~H~~~~~~al~a--gk~Vl 110 (340) T 1zh8_A 74 YEELLESGLVDAVDLTLPVELNLPFIEKALRK--GVHVI 110 (340) T ss_dssp HHHHHHSSCCSEEEECCCGGGHHHHHHHHHHT--TCEEE T ss_pred HHHHHCCCCCCEEEECCCCHHHHHHHHHHHHC--CCCEE T ss_conf 99995599999899138703457899999866--99657 No 47 >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua} Probab=91.10 E-value=0.17 Score=28.39 Aligned_cols=91 Identities=10% Similarity=0.078 Sum_probs=58.3 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+++||.|+....- |...++++++. +++++.|+..+.-++. +. ..+..+ +.+... T Consensus 3 mk~~rigiIG~G~~----g~~h~~~~~~~--~~~~l~av~d~~~~~~--~~---~~~~~~--------------~~~~~~ 57 (359) T 3e18_A 3 LKKYQLVIVGYGGM----GSYHVTLASAA--DNLEVHGVFDILAEKR--EA---AAQKGL--------------KIYESY 57 (359) T ss_dssp CCCEEEEEECCSHH----HHHHHHHHHTS--TTEEEEEEECSSHHHH--HH---HHTTTC--------------CBCSCH T ss_pred CCCCCEEEECCCHH----HHHHHHHHHHC--CCCEEEEEECCCHHHH--HH---HHHCCC--------------CCCCCH T ss_conf 88771999946799----99999999858--9958999988999999--99---986299--------------701999 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 86100128886898511776579999866301346311 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+.+.+.+||+|+..-.|.++..+++.+=+. |++|+ T Consensus 58 ~ell~~~~iD~V~i~tp~~~h~~~~~~al~~--gkhv~ 93 (359) T 3e18_A 58 EAVLADEKVDAVLIATPNDSHKELAISALEA--GKHVV 93 (359) T ss_dssp HHHHHCTTCCEEEECSCGGGHHHHHHHHHHT--TCEEE T ss_pred HHHHCCCCCCEEEECCCCHHHHHHHHHHHHC--CCEEE T ss_conf 9995599989899878805523567888853--98199 No 48 >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Probab=90.56 E-value=0.69 Score=24.38 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=53.1 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+++||.|+.- |- .|..+++.|++ .+++++.|+....-...+ ...+.-.. .. T Consensus 1 M~~irv~ivG~---G~-iG~~~~~~l~~--~~~~elv~v~~r~~~~~~--------~~~v~~~~--------------d~ 52 (320) T 1f06_A 1 MTNIRVAIVGY---GN-LGRSVEKLIAK--QPDMDLVGIFSRRATLDT--------KTPVFDVA--------------DV 52 (320) T ss_dssp CCCEEEEEECC---SH-HHHHHHHHHTT--CSSEEEEEEEESSSCCSS--------SSCEEEGG--------------GG T ss_pred CCCCEEEEECC---CH-HHHHHHHHHHH--CCCCEEEEEEECCHHHCC--------CCCCCCHH--------------HH T ss_conf 98557999880---89-99999999970--999799999968867676--------88864517--------------79 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 861001288868985117765799998663013463111 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383) .+. ...+|+|+..--++.++..++.+=+. |+.++- T Consensus 53 ~~~--~~~~Dvvii~tp~~~~~~~~~~~l~~--G~~VV~ 87 (320) T 1f06_A 53 DKH--ADDVDVLFLCMGSATDIPEQAPKFAQ--FACTVD 87 (320) T ss_dssp GGT--TTTCSEEEECSCTTTHHHHHHHHHTT--TSEEEC T ss_pred HHH--CCCCCEEEECCCCCCCHHHHHHHHHC--CCCEEE T ss_conf 974--05799999878971689999999986--999998 No 49 >2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} SCOP: c.23.1.1 Probab=89.99 E-value=0.87 Score=23.72 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=50.4 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |++|||+|+=.+++ ....+-+.|++. ++++..+.... +.+ T Consensus 13 m~~~rILvVDDd~~---~~~~l~~~L~~~---G~~v~~~~~g~---------------------~al------------- 52 (138) T 2b4a_A 13 MQPFRVTLVEDEPS---HATLIQYHLNQL---GAEVTVHPSGS---------------------AFF------------- 52 (138) T ss_dssp -CCCEEEEECSCHH---HHHHHHHHHHHT---TCEEEEESSHH---------------------HHH------------- T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHC---CCEEEEECCHH---------------------HHH------------- T ss_conf 67888999969999---999999999985---99799809999---------------------999------------- Q ss_pred HHHC-CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 8610-0128886898-5117765-79999866301346311110 Q gi|254780767|r 81 VELI-VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 81 ~~~i-~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383) +.+ ....||++|+ +.-||.| +.+++.+|+...++|+|... T Consensus 53 -~~l~~~~~~DlvilD~~lP~~dG~~l~~~ir~~~~~~piI~lt 95 (138) T 2b4a_A 53 -QHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138) T ss_dssp -HTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE T ss_pred -HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf -9998369998899858889988899999999709999689998 No 50 >2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus} Probab=88.77 E-value=0.3 Score=26.80 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=51.5 Q ss_pred CCCCEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEEC-CH---------H-------HHHCCCEEE--ECHHHCCE Q ss_conf 98745999976821478999-99999997389983999971-78---------9-------994788065--04445311 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVG-GP---------S-------LQKEGLVSL--FDFSELSV 60 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giG-G~---------~-------m~~~G~~~~--~~~~~l~v 60 (383) |+.|||++++.-+-=..+|+ ..+..+.++ +..+.+..+. |+ + ++..|++.. .++.+... T Consensus 1 m~~~~ILvi~aHPDDe~lg~GGtlak~~~~-G~~V~vv~lT~G~~~~~~~~~~R~~E~~~A~~~LGv~~~~~l~~~D~~~ 79 (242) T 2ixd_A 1 MSGLHILAFGAHADDVEIGMAGTIAKYTKQ-GYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGVKTRLNLAMPDRGL 79 (242) T ss_dssp -CCCSEEEEESSTTHHHHHHHHHHHHHHHT-TCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTCCEEEEEEECTTCC T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC T ss_conf 999718999878886788789999999977-9919999973897786641677999999999863975033167885444 Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHH Q ss_conf 013674664599999999998610012888689851177 Q gi|254780767|r 61 IGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPD 99 (383) Q Consensus 61 ~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pg 99 (383) ..-....+++.+.|++.+||+|++=...| T Consensus 80 ----------~~~~e~~~~l~~~i~~~~Pd~V~t~~~~D 108 (242) T 2ixd_A 80 ----------YMKEEYIREIVKVIRTYKPKLVFAPYYED 108 (242) T ss_dssp ----------CCCHHHHHHHHHHHHHHCCSEEEEECSCS T ss_pred ----------CCHHHHHHHHHHHHHHHCCCEEECCCCCC T ss_conf ----------66999999999997540544787468888 No 51 >2hun_A 336AA long hypothetical DTDP-glucose 4,6- dehydratase; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii OT3} Probab=88.73 E-value=0.52 Score=25.21 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=27.7 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9874599997682147899999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |++|||+|. |-. =..|+.|++.|.++ +.+.++.|+- T Consensus 1 ~~~MkILIT-Gat--GfiG~~l~~~L~~~-~~~~~V~~~d 36 (336) T 2hun_A 1 MHSMKLLVT-GGM--GFIGSNFIRYILEK-HPDWEVINID 36 (336) T ss_dssp --CCEEEEE-TTT--SHHHHHHHHHHHHH-CTTCEEEEEE T ss_pred CCCCEEEEE-CCC--CHHHHHHHHHHHHC-CCCCEEEEEE T ss_conf 999889998-788--78999999999966-9997899996 No 52 >2rng_A BIG defensin; alpha-helices & beta-sheets, three disulfide bridges, antibiotic, antimicrobial, fungicide, secreted; NMR {Tachypleus tridentatus} PDB: 2rq2_A Probab=88.68 E-value=0.048 Score=31.99 Aligned_cols=16 Identities=50% Similarity=0.866 Sum_probs=13.7 Q ss_pred CCCCEEE---ECCCCCCCC Q ss_conf 4631111---002211003 Q gi|254780767|r 114 NLPIINY---VCPSVWAWR 129 (383) Q Consensus 114 ~ipvi~y---v~PqvWAWr 129 (383) -||++|+ |+||||+|= T Consensus 3 aiP~~Y~G~~V~P~V~~wL 21 (79) T 2rng_A 3 LIPAIYIGATVGPSVWAYL 21 (79) T ss_dssp CSCSTTTTEEECHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHH T ss_conf 5647977020078999999 No 53 >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Probab=88.58 E-value=1.2 Score=22.76 Aligned_cols=91 Identities=11% Similarity=0.245 Sum_probs=48.7 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999-71789994788065044453110136746645999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVG-VGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~g-iGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) +++|||+++.+. |--|| ++.+|++ .+.--+++- -|-+.|...+-....|+++ .+. T Consensus 19 ~~~mkvLviGsG--gREhA--i~~~l~~-s~~~~~v~~~pgN~g~~~~~~~~~i~~~d-------------------~~~ 74 (442) T 3lp8_A 19 PGSMNVLVIGSG--GREHS--MLHHIRK-STLLNKLFIAPGREGMSGLADIIDIDINS-------------------TIE 74 (442) T ss_dssp -CCEEEEEEECS--HHHHH--HHHHHTT-CTTEEEEEEEECCGGGTTTSEECCCCTTC-------------------HHH T ss_pred CCCCEEEEECCC--HHHHH--HHHHHHH-CCCCCEEEEECCCHHHHHCCCEEEECCCC-------------------HHH T ss_conf 998689998988--89999--9999975-98989899979967887418216627789-------------------999 Q ss_pred HHHHCCCCCCCEEEE-ECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 986100128886898-511776579999866301346311 Q gi|254780767|r 80 TVELIVSSKPDVLLI-VDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~-iD~pgFnl~lak~lkk~~~~ipvi 118 (383) +.+.+++++||+||. -..| ..--++-.+++. |+|++ T Consensus 75 l~~~~~~~~iDlvvvGpE~p-L~~Gi~D~l~~~--gi~vf 111 (442) T 3lp8_A 75 VIQVCKKEKIELVVIGPETP-LMNGLSDALTEE--GILVF 111 (442) T ss_dssp HHHHHHHTTCCEEEECSHHH-HHTTHHHHHHHT--TCEEE T ss_pred HHHHHHHCCCCEEEECCCHH-HHHHHHHHHHHC--CCCEE T ss_conf 99999982999999898389-887889999748--99478 No 54 >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Probab=87.06 E-value=1.4 Score=22.33 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=29.6 Q ss_pred CCCCEEEEEECCCCHHH-----HHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 98745999976821478-----99999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDL-----LAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~-----~~a~li~~Lk~~~~~~~~~~giG 40 (383) |+++||.|++|..|... -|..++++|++....++...++. T Consensus 1 M~K~kIavl~GG~S~E~eiSl~Sg~~v~~~L~~~~~y~v~~~~i~ 45 (377) T 1ehi_A 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIA 45 (377) T ss_dssp --CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEEC T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 998889999694886459999999999997456559208999986 No 55 >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* Probab=87.03 E-value=1.5 Score=22.15 Aligned_cols=77 Identities=23% Similarity=0.235 Sum_probs=46.1 Q ss_pred CCCCEEEEEECCCCHHHH-----HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHH Q ss_conf 987459999768214789-----999999999738998399997178999478806504445311013674664599999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLL-----AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIF 75 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~-----~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~ 75 (383) |++ ||.|++|..|.+.. |..+.++|++. + .+..-+ |..+.. T Consensus 1 m~~-ki~vl~GG~S~E~~iSl~Sg~~i~~aL~~~-g--~~v~~i--------------d~~~~~---------------- 46 (306) T 1iow_A 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREG-G--IDAYPV--------------DPKEVD---------------- 46 (306) T ss_dssp CCC-EEEEECCCSSTTHHHHHHHHHHHHHHHHHT-T--CEEEEE--------------CTTTSC---------------- T ss_pred CCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHC-C--CEEEEE--------------CCCCCC---------------- T ss_conf 985-099993858731286999999999999886-9--989998--------------998554---------------- Q ss_pred HHHHHHHHCCCCCCCEEEEEC--HHHHHHHHHHHHHHHCCCCCCE Q ss_conf 999998610012888689851--1776579999866301346311 Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVD--NPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD--~pgFnl~lak~lkk~~~~ipvi 118 (383) ...++..+||.|+-+- ..|-+..+...+... |||.+ T Consensus 47 -----~~~l~~~~~d~vf~~~hG~~~ed~~~~~~le~~--~ipy~ 84 (306) T 1iow_A 47 -----VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELM--GLPYT 84 (306) T ss_dssp -----GGGTTTTTEEEEEECCCSTTTSSSHHHHHHHHH--TCCBS T ss_pred -----HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHC--CCEEE T ss_conf -----888864489889993468854137999999987--96382 No 56 >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Probab=86.96 E-value=0.4 Score=25.93 Aligned_cols=93 Identities=16% Similarity=0.264 Sum_probs=56.0 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |++||+.|+....-|..| +.+|++. + ++++.|+..+.-+.+. .+ -+++ |+ + +.+... T Consensus 3 m~kir~giIG~G~i~~~h----~~~l~~~-~-~~~l~av~d~~~~~~~--~~--a~~~---~~-------~---~~~~~~ 59 (330) T 3e9m_A 3 LDKIRYGIMSTAQIVPRF----VAGLRES-A-QAEVRGIASRRLENAQ--KM--AKEL---AI-------P---VAYGSY 59 (330) T ss_dssp CCCEEEEECSCCTTHHHH----HHHHHHS-S-SEEEEEEBCSSSHHHH--HH--HHHT---TC-------C---CCBSSH T ss_pred CCCCEEEEECCHHHHHHH----HHHHHHC-C-CCEEEEEECCCHHHHH--HH--HHHC---CC-------C---EECCCH T ss_conf 888589999883999999----9999748-9-9289999889999999--99--9983---99-------8---041999 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 86100128886898511776579999866301346311 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+.+.+..+|+|+..--|..+..+++.+=+. |++++ T Consensus 60 ~~ll~~~~iD~V~I~tp~~~H~~~~~~al~~--gk~v~ 95 (330) T 3e9m_A 60 EELCKDETIDIIYIPTYNQGHYSAAKLALSQ--GKPVL 95 (330) T ss_dssp HHHHHCTTCSEEEECCCGGGHHHHHHHHHHT--TCCEE T ss_pred HHHHCCCCCCEEEECCCHHHHHHHHHHHHHC--CCCEE T ss_conf 9995489999899899707689999999985--99576 No 57 >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Probab=86.76 E-value=0.28 Score=26.95 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=54.8 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+ |||.|+....-|..| +.+++.. .+++++.|+.++..+.. +.+ .+++. + + . +.+... T Consensus 1 M~-irv~iiG~G~~g~~h----~~~~~~~-~~~~~l~~v~d~~~~~~--~~~--~~~~~---~-~-~-------~~~~~~ 58 (344) T 3mz0_A 1 MS-LRIGVIGTGAIGKEH----INRITNK-LSGAEIVAVTDVNQEAA--QKV--VEQYQ---L-N-A-------TVYPND 58 (344) T ss_dssp CC-EEEEEECCSHHHHHH----HHHHHHT-CSSEEEEEEECSSHHHH--HHH--HHHTT---C-C-C-------EEESSH T ss_pred CC-EEEEEECCHHHHHHH----HHHHHHC-CCCCEEEEEECCCHHHH--HHH--HHHHC---C-C-C-------CEECCH T ss_conf 97-049999982999999----9999842-89968999989999999--999--99858---9-9-8-------067999 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 86100128886898511776579999866301346311 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+.+.+.+||+|+.---|.++..+++.+-+. |++++ T Consensus 59 ~~ll~~~~~D~V~i~tp~~~H~~~~~~al~~--gkhv~ 94 (344) T 3mz0_A 59 DSLLADENVDAVLVTSWGPAHESSVLKAIKA--QKYVF 94 (344) T ss_dssp HHHHHCTTCCEEEECSCGGGHHHHHHHHHHT--TCEEE T ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHC--CCCEE T ss_conf 9995599988899626521159999999854--99726 No 58 >3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus} Probab=86.71 E-value=0.32 Score=26.54 Aligned_cols=81 Identities=20% Similarity=0.353 Sum_probs=48.4 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+..||+|+=-++. ....+.+-|++. + ++++.|-..+.- | . T Consensus 1 M~m~~ILIvDD~~~---~r~~l~~~L~~~-~-~~~vv~~a~~g~--------------------e--------------a 41 (133) T 3b2n_A 1 MSLTSLIIAEDQNM---LRQAMVQLIKLH-G-DFEILADTDNGL--------------------D--------------A 41 (133) T ss_dssp --CEEEEEECSCHH---HHHHHHHHHHHH-S-SEEEEEEESCHH--------------------H--------------H T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHC-C-CEEEEEEECCHH--------------------H--------------H T ss_conf 99999999929999---999999999868-9-969999989999--------------------9--------------9 Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 86100128886898-5117765-7999986630134631111 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) .+.+++.+||++++ +.-||.| +.+++.+|+..+++|++-+ T Consensus 42 l~~~~~~~pDlvllDi~mP~~~G~e~~~~ir~~~~~~~vI~l 83 (133) T 3b2n_A 42 MKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIV 83 (133) T ss_dssp HHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEE T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 999985699999995778999889999999986899968999 No 59 >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 2i80_A* Probab=86.39 E-value=0.19 Score=28.01 Aligned_cols=137 Identities=9% Similarity=0.134 Sum_probs=62.8 Q ss_pred CCCCEEEEEECCCCHHHH-----HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHH Q ss_conf 987459999768214789-----999999999738998399997178999478806504445311013674664599999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLL-----AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIF 75 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~-----~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~ 75 (383) |++.||.|++|..|..-- |..++++|++. +.++...++.- .|.-...+.......-.-+.......... T Consensus 1 m~k~~I~vl~GG~S~E~~iSl~Sg~~v~~aL~~~-g~~v~~i~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (364) T 2i87_A 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKD-KYHVDIIYITN-----DGDWRKQNNITAEIKSTDELHLENGEALE 74 (364) T ss_dssp --CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTT-TEEEEEEEECT-----TCCEEEECCCCSCCCSGGGSCGGGSEEEC T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH-CCEEEEEEECC-----CCCEEECCCCCHHHCCCCCCCCCCCCCCH T ss_conf 9998899995918754399999999999987773-99799999848-----98755258741111157510237664100 Q ss_pred HHHHHHHHCCCCCCCEEEEE--CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHH Q ss_conf 99999861001288868985--1177657999986630134631111002211003663557999998640156774223 Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIV--DNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEV 153 (383) Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~i--D~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~ 153 (383) ....+.+.....++|+|+.. -.+|-+-.+...+... +||.+- | ......-..|+..+ +.+ T Consensus 75 ~~~~~~~~~~~~~~D~v~~~~hG~~gedg~~q~~le~~--~ipy~G---~--------~~~a~~i~~DK~~~-----k~~ 136 (364) T 2i87_A 75 ISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVL--DVPYVG---N--------GVLSAASSMDKLVM-----KQL 136 (364) T ss_dssp SSGGGGBCTTSSBCSEEEEECCCSSSCTTHHHHHHHHH--TCCBSS---C--------CHHHHHHHHSHHHH-----HHH T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHC--CCCCCC---C--------CHHHHHHCCHHHHH-----HHH T ss_conf 88888877524688889992678543265999999855--888347---9--------82454310038999-----999 Q ss_pred HHCCCCCCE Q ss_conf 200255314 Q gi|254780767|r 154 MQRLGGPPT 162 (383) Q Consensus 154 f~k~~~~~~ 162 (383) +++ .|+++ T Consensus 137 l~~-~gIpt 144 (364) T 2i87_A 137 FEH-RGLPQ 144 (364) T ss_dssp HHH-HTCCC T ss_pred HHH-CCCCC T ss_conf 998-69986 No 60 >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Probab=86.20 E-value=0.3 Score=26.74 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=57.9 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |++|||-|+.- |..|...+...+++ .++++.|+..+.-+.+ +.+ .+.+ | ..+.+... T Consensus 2 MkkirigiiG~---g~~~~~~~~~~~~~---~~~elvav~d~~~~~~--~~~--~~~~---~----------~~~~~~~~ 58 (336) T 2p2s_A 2 MKKIRFAAIGL---AHNHIYDMCQQLID---AGAELAGVFESDSDNR--AKF--TSLF---P----------SVPFAASA 58 (336) T ss_dssp --CCEEEEECC---SSTHHHHHHHHHHH---TTCEEEEEECSCTTSC--HHH--HHHS---T----------TCCBCSCH T ss_pred CCCCEEEEECC---CHHHHHHHHHHHHC---CCCEEEEEECCCHHHH--HHH--HHHC---C----------CCCEECCH T ss_conf 96056999936---88999999988650---8978999989999999--999--9877---9----------98378999 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 86100128886898511776579999866301346311 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+.+...++|+|+..--|..+..+++.+=+. |.+|+ T Consensus 59 ~ell~~~~iDaV~I~tp~~~H~~~~~~al~~--gk~Vl 94 (336) T 2p2s_A 59 EQLITDASIDLIACAVIPCDRAELALRTLDA--GKDFF 94 (336) T ss_dssp HHHHTCTTCCEEEECSCGGGHHHHHHHHHHT--TCEEE T ss_pred HHHHCCCCCCEEEEECCHHHHHHHHHHHHHC--CCEEE T ss_conf 9995599989999968827789999999985--99089 No 61 >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} Probab=85.24 E-value=1.8 Score=21.57 Aligned_cols=39 Identities=18% Similarity=0.438 Sum_probs=26.6 Q ss_pred CCCCEEEEEECCCCHHHHHH-----HHHHHHHHHCCCCEEEEEEC Q ss_conf 98745999976821478999-----99999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAG-----DLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a-----~li~~Lk~~~~~~~~~~giG 40 (383) |++|||.|++|..|-.-.-| .++++|++. ..++...++. T Consensus 20 M~k~kv~vl~GG~S~E~eiSl~Sa~~v~~~L~~~-~~~v~~i~i~ 63 (386) T 3e5n_A 20 MRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQ-RFEPVLIGID 63 (386) T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTT-TEEEEEEEEC T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH-CCEEEEEEEC T ss_conf 8767799997978873899999999999975464-7989999985 No 62 >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Probab=84.35 E-value=0.74 Score=24.18 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=24.3 Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 86100128886898-5117765-7999986630134631111 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) .+.+...+||+||+ +.-||.| +.+.+.+|+..+++|+|.. T Consensus 40 l~~l~~~~~dliilD~~mP~~dGle~~~~ir~~~~~~pvI~l 81 (155) T 1qkk_A 40 LAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILV 81 (155) T ss_dssp HHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEE T ss_pred HHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 998532698777654578999899999999972989948989 No 63 >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} Probab=84.34 E-value=0.48 Score=25.39 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=52.1 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH Q ss_conf 74599997682147899999999997389983999971789994788065044453110136746645999999999986 Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383) Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383) +|||-|+... ..|..-++.+.+. .+++++.|+..+.-+.+ +.+ .+++++- .+.+....+ T Consensus 23 ~lrigIIG~G----~ig~~h~~~~~~~-~~~~~lvav~d~~~~~a--~~~--a~~~~~~------------~~~y~~~~e 81 (357) T 3ec7_A 23 TLKAGIVGIG----MIGSDHLRRLANT-VSGVEVVAVCDIVAGRA--QAA--LDKYAIE------------AKDYNDYHD 81 (357) T ss_dssp CEEEEEECCS----HHHHHHHHHHHHT-CTTEEEEEEECSSTTHH--HHH--HHHHTCC------------CEEESSHHH T ss_pred CEEEEEECCH----HHHHHHHHHHHHC-CCCCEEEEEECCCHHHH--HHH--HHHHCCC------------CCCCCCHHH T ss_conf 3149999984----9999999999846-99978999978999999--999--9983999------------831199999 Q ss_pred HCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 1001288868985117765799998663013463111 Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 83 ~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383) .+.+..+|+|+..-.|.++..+++.+=+. |++|+- T Consensus 82 ll~~~~iDaV~I~Tp~~~H~~~~~~al~~--GkhVl~ 116 (357) T 3ec7_A 82 LINDKDVEVVIITASNEAHADVAVAALNA--NKYVFC 116 (357) T ss_dssp HHHCTTCCEEEECSCGGGHHHHHHHHHHT--TCEEEE T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHC--CCEEEE T ss_conf 96599988899889850000457889851--776997 No 64 >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Probab=84.27 E-value=0.97 Score=23.40 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=28.9 Q ss_pred HCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 100128886898-5117765-7999986630134631111 Q gi|254780767|r 83 LIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 83 ~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) .+.+++||++++ +.-|+.| +.+.+.+|+..+++|++-. T Consensus 42 ~~~~~~~dlii~D~~mP~~~G~e~~~~ir~~~~~~~ii~l 81 (120) T 1tmy_A 42 KYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVC 81 (120) T ss_dssp HHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEE T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 9983699999996368999799999999975879978999 No 65 >1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1 Probab=84.18 E-value=2 Score=21.26 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=29.1 Q ss_pred CEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHC Q ss_conf 50599853874301230511189998764027351262016633688999999604 Q gi|254780767|r 193 KKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKW 248 (383) Q Consensus 193 ~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 248 (383) ..+.+..+|-.. ...+.+.+..+....|-+.++.+..+.+...+...+... T Consensus 156 ~~vv~Ig~StGG-----p~al~~~l~~lp~~~~~ivivqHm~~~f~~~l~~~L~~~ 206 (349) T 1a2o_A 156 EKLIAIGASTGG-----TEAIRHVLQPLPLSSPAVIITQHMPPGFTRSFAERLNKL 206 (349) T ss_dssp TCEEEEEECTTH-----HHHHHHHHTTCCTTCCEEEEEECCCTTHHHHHHHHHHHH T ss_pred CCEEEEEECCCC-----HHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCC T ss_conf 738999926889-----999999983399988968999948995468999987353 No 66 >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 Probab=83.89 E-value=1.6 Score=22.04 Aligned_cols=101 Identities=23% Similarity=0.361 Sum_probs=56.7 Q ss_pred CC-CCEEEEEECCCCHHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHH Q ss_conf 98-74599997682147899999-99999738998399997178999478806504445311013674664599999999 Q gi|254780767|r 1 MN-SLKIAVIAGEISGDLLAGDL-IKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRIN 78 (383) Q Consensus 1 m~-~mki~i~aGE~SGD~~~a~l-i~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~ 78 (383) |+ +||+.|+ | ||-. |..| ++-|+. .|.+++..+.|..-+..++. +.....+--.. .... T Consensus 1 MtkkikVaIi-G--tG~i-G~eLl~~lL~~--hp~~ei~av~s~~~ag~~l~---~a~~~~~~~~~----------~~~~ 61 (312) T 1nvm_B 1 MNQKLKVAII-G--SGNI-GTDLMIKVLRN--AKYLEMGAMVGIDAASDGLA---RAQRMGVTTTY----------AGVE 61 (312) T ss_dssp CCSCEEEEEE-C--CSHH-HHHHHHHHHHH--CSSEEEEEEECSCTTCHHHH---HHHHTTCCEES----------SHHH T ss_pred CCCCCEEEEE-C--CCHH-HHHHHHHHHHC--CCCCEEEEEEECCCCCCHHH---HHHHCCCCCCC----------CCEE T ss_conf 9988769998-6--8699-99999999845--99868999994670342045---56662897555----------6521 Q ss_pred HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 998610012888689851177657999986630134631111 Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) .+.+.....+.|+|++-=..|.+...+..++....|+++|-. T Consensus 62 ~~~~~~~~~~vDvVF~AtP~g~~~~~~~~~~~~~~g~~vIDl 103 (312) T 1nvm_B 62 GLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDL 103 (312) T ss_dssp HHHHSGGGGGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEEC T ss_pred ECCCCCCCCCCCEEEECCCCHHHHHHHCCHHHHHCCCEEEEC T ss_conf 010003202476899868837777622058899789979966 No 67 >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Probab=83.84 E-value=1 Score=23.18 Aligned_cols=40 Identities=18% Similarity=0.440 Sum_probs=29.8 Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 6100128886898-5117765-79999866301346311110 Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383) +.+.+++||++++ +.-||.| +.+.+.+|+...++|+|-.- T Consensus 45 ~~l~~~~~dlvi~D~~mP~~dG~~~~~~ir~~~~~~piI~lt 86 (130) T 3eod_A 45 ELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVIS 86 (130) T ss_dssp HHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEE T ss_pred HHHHCCCCCEEHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 998528988745742179998999999999609899899998 No 68 >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Probab=83.78 E-value=0.64 Score=24.60 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=53.3 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+ ||+-|+....-|. ..++++++ .+++++.|+.++.-+.+ +.. -+++ |+.. .+... T Consensus 1 Mt-lrvgiIG~G~~g~----~h~~~~~~--~~~~~ivav~d~~~~~~--~~~--a~~~---~~~~----------~~~~~ 56 (344) T 3ezy_A 1 MS-LRIGVIGLGRIGT----IHAENLKM--IDDAILYAISDVREDRL--REM--KEKL---GVEK----------AYKDP 56 (344) T ss_dssp -C-EEEEEECCSHHHH----HHHHHGGG--STTEEEEEEECSCHHHH--HHH--HHHH---TCSE----------EESSH T ss_pred CC-CEEEEECCHHHHH----HHHHHHHH--CCCCEEEEEECCCHHHH--HHH--HHHC---CCCC----------CCCCH T ss_conf 97-2499999719999----99999972--89968999989899999--999--9983---9984----------02999 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCC Q ss_conf 8610012888689851177657999986630134631 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPI 117 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipv 117 (383) .+.+.+.++|+|+..--|.++..+++++-+. |++| T Consensus 57 ~ell~~~~iD~V~I~tp~~~H~~~~~~al~~--gkhV 91 (344) T 3ezy_A 57 HELIEDPNVDAVLVCSSTNTHSELVIACAKA--KKHV 91 (344) T ss_dssp HHHHHCTTCCEEEECSCGGGHHHHHHHHHHT--TCEE T ss_pred HHHHCCCCCCEEEECCCCHHHHHHHHHHHHC--CCCE T ss_conf 9996499989999716311439999999976--9968 No 69 >2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X* Probab=83.78 E-value=0.64 Score=24.57 Aligned_cols=94 Identities=11% Similarity=0.124 Sum_probs=55.2 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+ +|+.|+....-|..|+.. |+...+.++++.|+.....+.+ +.+. +++++ + +.+... T Consensus 1 M~-ik~giIG~G~~g~~~~~~----l~~~~~~~~~l~~v~d~~~~~~--~~~a--~~~~~----------~---~~~~~~ 58 (334) T 2o4u_X 1 MA-LRWGIVSVGLISSDFTAV----LQTLPRSEHQVVAVAARDLSRA--KEFA--QKHDI----------P---KAYGSY 58 (334) T ss_dssp -C-EEEEEECCSHHHHHHHHH----HTTSCTTTEEEEEEECSSHHHH--HHHH--HHHTC----------S---EEESSH T ss_pred CC-EEEEEECCCHHHHHHHHH----HHHCCCCCEEEEEEECCCHHHH--HHHH--HHCCC----------C---CEECCH T ss_conf 96-679999993999999999----9858588859999987999999--9999--98399----------8---254899 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 86100128886898511776579999866301346311 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+.+....+|+|+..-.|..+..+++.+=++ |++|+ T Consensus 59 ~~ll~~~~iD~v~I~tp~~~h~~~~~~al~~--gkhVl 94 (334) T 2o4u_X 59 EELAKDPNVEVAYVGTQHPQHKAAVMLCLAA--GKAVL 94 (334) T ss_dssp HHHHTCTTCSEEEECCCGGGHHHHHHHHHHT--TCEEE T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHC--CCEEE T ss_conf 9995699998899905654114778999986--99188 No 70 >2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2} Probab=83.58 E-value=2.2 Score=21.10 Aligned_cols=107 Identities=20% Similarity=0.280 Sum_probs=60.0 Q ss_pred CCCCEEEEEECCCCHHHHHHHH-HHHHHHHCCCCEEEEEECCHHH----HHCCCEE------EECHHH-------CCEEE Q ss_conf 9874599997682147899999-9999973899839999717899----9478806------504445-------31101 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDL-IKSLKEMVSYPINLVGVGGPSL----QKEGLVS------LFDFSE-------LSVIG 62 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~l-i~~Lk~~~~~~~~~~giGG~~m----~~~G~~~------~~~~~~-------l~v~G 62 (383) |+..+|.|+.||++| .|..+ ++++.+..-....+.=+|.... ++.++.. +-+.++ +.+.- T Consensus 4 M~~k~IaIT~GDPaG--IGpEIilKal~~~~~~~~~~vvig~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~v~d 81 (330) T 2hi1_A 4 METKTVAITMGDPAG--IGPEIIVKALSEDGLNGAPLVVIGCLATLKRLQAKGITPNVELRAIERVAEARFAPGIIHVID 81 (330) T ss_dssp -CCCCEEEECCCTTT--THHHHHHHHHTSTTTTTCSEEEEECHHHHHHHHHTTSSCCCEEEEESSGGGCCCCTTEEEEEE T ss_pred CCCCEEEEECCCCCH--HHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCEEEEEC T ss_conf 899918998998627--389999999967350489989997899999999975899950343688666306788157731 Q ss_pred --HHH--HH-------HHHHHHHHHHHHHHHHCCCCCCCEEEE------------ECHHHHHHHHHHHHH Q ss_conf --367--46-------645999999999986100128886898------------511776579999866 Q gi|254780767|r 63 --IMQ--VV-------RHLPQFIFRINQTVELIVSSKPDVLLI------------VDNPDFTHRVAKRVR 109 (383) Q Consensus 63 --~~e--vl-------~~~~~~~~~~~~~~~~i~~~~Pd~vi~------------iD~pgFnl~lak~lk 109 (383) +.+ .+ .+=....+.++...+.+++.+-|++|+ .+|||-.--||++.. T Consensus 82 ~~~~~~~~~~~G~~~~~~g~~a~~~l~~A~~~~~~g~~dalVT~PInK~~i~~aG~~f~GHTE~La~~~~ 151 (330) T 2hi1_A 82 EPLAQPEALEAGKVQAQAGDLAYRCVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTH 151 (330) T ss_dssp CCCSCGGGCCTTSCCHHHHHHHHHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCSSHHHHHHHHTT T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHCC T ss_conf 5545564333575305668999999999999974388617983784477897648997865188776404 No 71 >3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Probab=83.40 E-value=0.79 Score=24.00 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=24.7 Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 6100128886898-5117765-7999986630134631111 Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) +.+.+.+||++++ +.-|+.| +.+++.+|+..+++|+|.. T Consensus 43 ~~~~~~~pdlillDi~MP~~dG~el~~~i~~~~p~~~iI~l 83 (141) T 3cu5_A 43 QIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFM 83 (141) T ss_dssp HHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 99986799989973689999999999999975879939999 No 72 >1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Probab=83.14 E-value=1.3 Score=22.53 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=46.0 Q ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH Q ss_conf 4599997-682147899999999997389983999971789994788065044453110136746645999999999986 Q gi|254780767|r 4 LKIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383) Q Consensus 4 mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383) |||.|.+ |. |-. ...|+++++.. ..++++.+|-..+-.+.|.+. .......-+....+.+..-...-+.+.+ T Consensus 1 Mki~il~SG~--Gsn-l~~li~~~~~~-~l~~~I~~Visn~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (212) T 1jkx_A 1 MNIVVLISGN--GSN-LQAIIDACKTN-KIKGTVRAVFSNKADAFGLER---ARQAGIATHTLIASAFDSREAYDRELIH 73 (212) T ss_dssp CEEEEEESSC--CHH-HHHHHHHHHTT-SSSSEEEEEEESCTTCHHHHH---HHHTTCEEEECCGGGCSSHHHHHHHHHH T ss_pred CEEEEEEECC--CHH-HHHHHHHHHCC-CCCCEEEEEEECCCCCCHHHH---HHHCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 9699998278--078-99999988719-999879999947987530135---4431312200112357998899999999 Q ss_pred HCCCCCCCEEEEECHHH-HHHHHHHHH Q ss_conf 10012888689851177-657999986 Q gi|254780767|r 83 LIVSSKPDVLLIVDNPD-FTHRVAKRV 108 (383) Q Consensus 83 ~i~~~~Pd~vi~iD~pg-Fnl~lak~l 108 (383) .+++.+||+++++-|+- +.-.+-... T Consensus 74 ~l~~~~~Dliv~~g~~~il~~~~l~~~ 100 (212) T 1jkx_A 74 EIDMYAPDVVVLAGFMRILSPAFVSHY 100 (212) T ss_dssp HHGGGCCSEEEESSCCSCCCHHHHHHT T ss_pred HHHHHCCCEEEEECHHHHCCHHHHHHH T ss_conf 999709999999361444588998763 No 73 >2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP; 2.11A {Borrelia burgdorferi B31} SCOP: c.89.1.1 PDB: 1kzh_A* Probab=82.97 E-value=2.3 Score=20.95 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=68.3 Q ss_pred CCCEEEEEE-CCCCHHHHHH--HHHHHHHHHCCCCEEEEEE-CCHHHHHCCCEEEECHHH-----CCEEEHHHHHHH-HH Q ss_conf 874599997-6821478999--9999999738998399997-178999478806504445-----311013674664-59 Q gi|254780767|r 2 NSLKIAVIA-GEISGDLLAG--DLIKSLKEMVSYPINLVGV-GGPSLQKEGLVSLFDFSE-----LSVIGIMQVVRH-LP 71 (383) Q Consensus 2 ~~mki~i~a-GE~SGD~~~a--~li~~Lk~~~~~~~~~~gi-GG~~m~~~G~~~~~~~~~-----l~v~G~~evl~~-~~ 71 (383) ++|||-|+. |.++--++++ .+++++++. +++.+++|+ +|.+---.|- +.++++ +.-.|=++.+.. .. T Consensus 71 ~~~~IgIl~sGG~aPG~N~vI~gvv~~~~~~-~~~~~v~G~~~G~~GL~~~~--~i~Lt~~~v~~~~n~GG~~l~~s~r~ 147 (555) T 2f48_A 71 KALNIGIILSGGPAPGGHNVISGVFDAIKKF-NPNSKLFGFKGGPLGLLEND--KIELTESLINSYRNTGGFDIVSSGRT 147 (555) T ss_dssp SCCEEEEEEBSSCCTTHHHHHHHHHHHHHHH-CTTCEEEEETTTTHHHHTTC--EEEECHHHHHHHTTCCSSTTTCCBCC T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHCCCC--EEECCHHHHHHHHHCCCEEEECCCCC T ss_conf 8876999780787488999999999999985-89989999825448757899--99999899845871799284179999 Q ss_pred H--HHHHHHHHHHHCCCCCCCEEEEEC---HHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 9--999999998610012888689851---17765799998663013463111 Q gi|254780767|r 72 Q--FIFRINQTVELIVSSKPDVLLIVD---NPDFTHRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 72 ~--~~~~~~~~~~~i~~~~Pd~vi~iD---~pgFnl~lak~lkk~~~~ipvi~ 119 (383) + -...++++.+.+++.+-|.+|.|- +-.--..|+++.++.+.++++|. T Consensus 148 ~~~~~e~~~~~~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~~~~i~VIg 200 (555) T 2f48_A 148 KIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIG 200 (555) T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEE T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 97777899999999986389889997876899999999999986167960898 No 74 >1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Probab=82.83 E-value=0.84 Score=23.79 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=25.8 Q ss_pred HHHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 986100128886898-5117765-7999986630134631111 Q gi|254780767|r 80 TVELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) ..+.+...+||++++ ++-||.+ +.+.+.+++..+.+|+|-+ T Consensus 40 al~~~~~~~pDlvllD~~mp~~~G~~~l~~i~~~~~~~~iI~l 82 (208) T 1yio_A 40 FLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFI 82 (208) T ss_dssp HHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE T ss_pred HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 9998604699989985788997657999998860566517987 No 75 >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Probab=82.33 E-value=0.97 Score=23.40 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=27.8 Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 6100128886898-5117765-7999986630134631111 Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) +.+.+.+||+|++ +.-||.| +.+.+.+|+..+.+|++-+ T Consensus 45 ~~~~~~~pDlvllDi~mP~~~G~e~~~~ir~~~~~~~iivl 85 (153) T 3cz5_A 45 RLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIF 85 (153) T ss_dssp HHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 99754699689996457998789999999985899968999 No 76 >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Probab=82.28 E-value=2.4 Score=20.78 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=47.7 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCE-EEEE-ECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 874599997682147899999999997389983-9999-71789994788065044453110136746645999999999 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPI-NLVG-VGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~-~~~g-iGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) +.|||+|+.+. |--|| |..+|++ .+ .+ +++- -|-+.|...+-....|..+ ... T Consensus 20 ~~mkvLviGsG--grEhA--ia~~l~~-s~-~~~~v~~~pgN~g~~~~~~~~~i~~~d-------------------~~~ 74 (451) T 2yrx_A 20 SHMNVLVIGRG--GREHA--IAWKAAQ-SP-LVGKLYVAPGNPGIADVAELVHIDELD-------------------IEA 74 (451) T ss_dssp SSEEEEEEECS--HHHHH--HHHHHHT-CT-TEEEEEEEECCTTGGGTSEECCCCTTC-------------------HHH T ss_pred CCCEEEEECCC--HHHHH--HHHHHHH-CC-CCCEEEEECCCHHHHHHCEEEECCCCC-------------------HHH T ss_conf 29789998978--89999--9999974-98-989899978987998517046248689-------------------999 Q ss_pred HHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCE Q ss_conf 986100128886898511776-579999866301346311 Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPII 118 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi 118 (383) +.+.+++++||.||. ..-.. -..++-.+++. |+|++ T Consensus 75 i~~~~~~~~iD~vvv-GpE~pL~~gl~D~l~~~--gi~v~ 111 (451) T 2yrx_A 75 LVQFAKQQAIDLTIV-GPEAPLASGIVDRFMAE--GLRIF 111 (451) T ss_dssp HHHHHHHTTCSEEEE-CSHHHHHTTHHHHHHHT--TCCEE T ss_pred HHHHHHHHCCCEEEE-CCCHHHHHHHHHHHHHC--CCCEE T ss_conf 999999839999998-97578888999999506--99400 No 77 >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogenase; structural genomics, short-chain dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Probab=82.21 E-value=2.4 Score=20.76 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=47.4 Q ss_pred CCCC---EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHH Q ss_conf 9874---5999976821478999999999973899839999717899947880650444531101367466459999999 Q gi|254780767|r 1 MNSL---KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRI 77 (383) Q Consensus 1 m~~m---ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~ 77 (383) |++| |+.+++|-.|| .|..+.+.|-+. +-++-+.+...++.++.-.+..-....-.+..+.--+...-.+...+ T Consensus 1 M~~~L~GKvalITGas~G--IG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 77 (267) T 2gdz_A 1 MAHMVNGKVALVTGAAQG--IGRAFAEALLLK-GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTF 77 (267) T ss_dssp -CCCCTTCEEEEETTTSH--HHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHH T ss_pred CCCCCCCCEEEEECCCCH--HHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH T ss_conf 997649988999285878--999999999987-99899997978889999999997527984899995279999999999 Q ss_pred HHHHHHCCCCCCCEEEE Q ss_conf 99986100128886898 Q gi|254780767|r 78 NQTVELIVSSKPDVLLI 94 (383) Q Consensus 78 ~~~~~~i~~~~Pd~vi~ 94 (383) +++.+.. -+.|++|- T Consensus 78 ~~~~~~~--g~iDiLVn 92 (267) T 2gdz_A 78 RKVVDHF--GRLDILVN 92 (267) T ss_dssp HHHHHHH--SCCCEEEE T ss_pred HHHHHHC--CCCCEEEE T ss_conf 9999972--99889998 No 78 >1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Probab=81.78 E-value=0.81 Score=23.92 Aligned_cols=134 Identities=13% Similarity=0.189 Sum_probs=64.3 Q ss_pred CCCCEEEEEECCCCHHHH-----HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCC------EEEHHHHHHH Q ss_conf 987459999768214789-----99999999973899839999717899947880650444531------1013674664 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLL-----AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELS------VIGIMQVVRH 69 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~-----~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~------v~G~~evl~~ 69 (383) |++|||.|++|..|...- |..+.++|++. ..++...++. ..|.-...+..... .....+.-.. T Consensus 1 M~k~ki~vl~GG~S~E~~vSl~Sg~~v~~aL~~~-~y~v~~i~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (343) T 1e4e_A 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKE-KYEPLYIGIT-----KSGVWKMCEKPCAEWENENCYSAVLSPDKK 74 (343) T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTT-TEEEEEEEEC-----TTSCEEEESCCCTTCCCTTCEEEEECSCTT T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH-CCEEEEEEEC-----CCCCEEECCCCHHHHHCCCCCCEEECCCCC T ss_conf 9987899996957842899999999999975162-8969999886-----999678557615554225664223357633 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEE--CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 59999999999861001288868985--1177657999986630134631111002211003663557999998640156 Q gi|254780767|r 70 LPQFIFRINQTVELIVSSKPDVLLIV--DNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISIL 147 (383) Q Consensus 70 ~~~~~~~~~~~~~~i~~~~Pd~vi~i--D~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~if 147 (383) ... ...+........+||+|+-+ -..|=|-.+...|... |||.+. ......+-..|+.++ T Consensus 75 ~~~---~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~~le~~--gipy~G-----------s~~~~s~l~~DK~~~-- 136 (343) T 1e4e_A 75 MHG---LLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELS--GIPFVG-----------CDIQSSAICMDKSLT-- 136 (343) T ss_dssp TCE---EEEEETTEEEEEECSEEEECCCSTTTTSSHHHHHHHHH--TCCBSS-----------CCHHHHHHHHSHHHH-- T ss_pred CCC---HHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHC--CCCCCC-----------CCHHHHHHHCCCHHH-- T ss_conf 220---12202310134567789988778775460999999986--998616-----------857999986470666-- Q ss_pred CCCHHHHHCCCCCCE Q ss_conf 774223200255314 Q gi|254780767|r 148 PFEKEVMQRLGGPPT 162 (383) Q Consensus 148 pFE~~~f~k~~~~~~ 162 (383) ++++++ .|+++ T Consensus 137 ---k~il~~-~gI~t 147 (343) T 1e4e_A 137 ---YIVAKN-AGIAT 147 (343) T ss_dssp ---HHHHHH-TTCBC T ss_pred ---HHHHHH-CCCCC T ss_conf ---889998-09998 No 79 >2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus} Probab=81.71 E-value=2.5 Score=20.64 Aligned_cols=164 Identities=15% Similarity=0.208 Sum_probs=83.8 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEE----------CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHH Q ss_conf 999999999861001288868985----------1177657999986630134631111002211003663557999998 Q gi|254780767|r 72 QFIFRINQTVELIVSSKPDVLLIV----------DNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYIN 141 (383) Q Consensus 72 ~~~~~~~~~~~~i~~~~Pd~vi~i----------D~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d 141 (383) ++++...++. +.++|+++..+ |-.+ +++.+++. .++||+++-+|.+= ..-..-....+. T Consensus 84 ~L~~~I~ei~---~~~~P~~I~V~sTC~seiIGdDl~~----v~~~~~~~-~~ipVv~v~~~gf~---gs~~~G~d~al~ 152 (460) T 2xdq_A 84 ELKRLCLEIK---RDRNPSVIVWIGTCTTEIIKMDLEG----LAPKLEAE-IGIPIVVARANGLD---YAFTQGEDTVLA 152 (460) T ss_dssp HHHHHHHHHH---HHHCCSEEEEEECHHHHHTTCCHHH----HHHHHHHH-HSSCEEEEECCTTT---CCTTHHHHHHHH T ss_pred HHHHHHHHHH---HCCCCCEEEEECCCCHHHHCCCHHH----HHHHHHHH-CCCCEEEEECCCCC---CCHHHHHHHHHH T ss_conf 9999999998---6059988999767608875776999----99997653-19807999558866---768899999999 Q ss_pred HHCCCCCCCHH-------------------HH-------HCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEE Q ss_conf 64015677422-------------------32-------00255314763882112210013558889761876556505 Q gi|254780767|r 142 QVISILPFEKE-------------------VM-------QRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKI 195 (383) Q Consensus 142 ~~~~ifpFE~~-------------------~f-------~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I 195 (383) .++--+|-..+ .- ....+.+...+|+ +.|... ..-....++.|+. .. T Consensus 153 alv~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~d~~e--~~~~~ll~~~Gi~----v~ 225 (460) T 2xdq_A 153 AMAARCPTSTAISDPEERNPIQRLLNFGKKKEEVQAQSSQYHPHPPLVLFGS-LPDPVV--TQLTLELKKQGIK----VS 225 (460) T ss_dssp HHHTTCCCCC-----------------------------CCCSCCCEEEESC-CCHHHH--HHHHHHHGGGTCC----EE T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC-CCCCHH--HHHHHHHHHCCCC----CC T ss_conf 9999831045766666543244456777631344420023304885587367-663116--7789999865986----32 Q ss_pred EEEECCCCCCHHHHC---------CCHHHHHHHHHHCCC--CCEEEECCC-CCHHHHHHHHHHHCCCCCE Q ss_conf 998538743012305---------111899987640273--512620166-3368899999960488850 Q gi|254780767|r 196 LLLPGSRAQEIYKIL---------PFFESAVASLVKRNP--FFRFSLVTV-SSQENLVRCIVSKWDISPE 253 (383) Q Consensus 196 ~llPGSR~~EI~~~l---------P~~l~~~~~l~~~~~--~~~~~i~~~-~~~~~~~~~~~~~~~~~~~ 253 (383) .++||.+..|+.... |.+.+++..+.+++. .+....|.. .+...+++...+..+.+.. T Consensus 226 ~~~pg~~~~el~~~~~a~~~i~~~~~~~~~a~~l~~~~g~p~i~~~~PiGi~~T~~~l~~ia~~~g~~~~ 295 (460) T 2xdq_A 226 GWLPAKRYTELPVIDEGYYVAGVNPFLSRTATTLIRRRKCQLITAPFPIGPDGTRTWIEQICATFGIQPQ 295 (460) T ss_dssp EEESCSSGGGCCCCCTTCEEEESSTTCHHHHHHHHHTTCCEEECCCCSBHHHHHHHHHHHHHHHTTCCCC T ss_pred CCCCCCCHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCHH T ss_conf 3459999999997544021110488789999999997299716248872779999999999999688925 No 80 >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Probab=81.47 E-value=0.75 Score=24.14 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=26.1 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 0128886898-5117765-7999986630134631111 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) .+.+||+||+ +.-||.| +.+.+.+|+..+++|+|-. T Consensus 48 ~~~~~DlvilD~~mP~~dG~el~~~ir~~~~~~piI~l 85 (137) T 3hdg_A 48 GLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVI 85 (137) T ss_dssp HHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEEC T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 74799899973789999899999999950989958999 No 81 >3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12} Probab=80.67 E-value=0.65 Score=24.55 Aligned_cols=37 Identities=32% Similarity=0.453 Sum_probs=26.8 Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 00128886898-5117765-7999986630134631111 Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) +.+.+||++++ +.-||.| +.+.+.+|++.+.+|++-+ T Consensus 42 ~~~~~pDlvilD~~mP~~~G~e~~~~lr~~~~~~~iivl 80 (134) T 3f6c_A 42 VETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIV 80 (134) T ss_dssp HHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEE T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 872699999995999999899999999952999838999 No 82 >3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Probab=80.51 E-value=1.2 Score=22.88 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=25.0 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 0128886898-5117765-7999986630134631111 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) .+.+||++|+ +.-||.+ +.+.+.+|+..+++|+|.. T Consensus 44 ~~~~~dlvllD~~mp~~~G~el~~~lr~~~~~~piI~l 81 (132) T 3crn_A 44 ENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMV 81 (132) T ss_dssp HHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEE T ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 85799999970448996089999999984899989999 No 83 >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} Probab=79.82 E-value=2.1 Score=21.16 Aligned_cols=124 Identities=17% Similarity=0.211 Sum_probs=67.1 Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-------CHHHHHCCCEEE---------EC----------HHHCC Q ss_conf 99997682147899999999997389983999971-------789994788065---------04----------44531 Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG-------GPSLQKEGLVSL---------FD----------FSELS 59 (383) Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG-------G~~m~~~G~~~~---------~~----------~~~l~ 59 (383) -|+.||.++=+.- -.++++|.+. +-|+-=.|+- ||--|.+....+ ++ -..+- T Consensus 24 ~yltaG~P~~e~s-~~~l~~l~~~-G~D~iEiGiPfSDPvaDGpvIq~a~~raL~~G~~~~~~~~~~~~~r~~~~~~p~v 101 (271) T 3nav_A 24 PFVTIGDPNPEQS-LAIMQTLIDA-GADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIG 101 (271) T ss_dssp EEEETTSSCHHHH-HHHHHHHHHT-TCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEE T ss_pred EEEECCCCCHHHH-HHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE T ss_conf 8983718987899-9999999976-9999997899888777689999998887764860766766776642026788879 Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHH-HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 101367466459999999999861001288868985117-7657999986630134631111002211003663557999 Q gi|254780767|r 60 VIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNP-DFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCA 138 (383) Q Consensus 60 v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~p-gFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~ 138 (383) +||.+..+.++. .++..+.+.+..-|.+|..|-| +-.-.+.+.+++. |+..|++|+|+- ...|++.+.+ T Consensus 102 lM~Y~N~i~~~G-----~e~F~~~~~~~Gv~GviipDLp~ee~~~~~~~~~~~--gl~~I~lvsptt---~~~Ri~~i~~ 171 (271) T 3nav_A 102 LLMYANLVYARG-----IDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKF--GIQPIFIAPPTA---SDETLRAVAQ 171 (271) T ss_dssp EEECHHHHHHTC-----HHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHT--TCEEEEEECTTC---CHHHHHHHHH T ss_pred EEEEEHHHHHCC-----HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---HHHHHHHHHH T ss_conf 997504665528-----999999998769948994589815659999998767--971799944675---5889999986 Q ss_pred HHH Q ss_conf 998 Q gi|254780767|r 139 YIN 141 (383) Q Consensus 139 ~~d 141 (383) ..+ T Consensus 172 ~a~ 174 (271) T 3nav_A 172 LGK 174 (271) T ss_dssp HCC T ss_pred CCC T ss_conf 188 No 84 >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Probab=79.38 E-value=1.3 Score=22.45 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=28.2 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC Q ss_conf 0128886898-5117765-799998663013463111100 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383) .+++||++|+ +.-||.| +.+.+.+|+..+.+|++-..+ T Consensus 41 ~~~~~dlii~D~~mp~~dG~e~~~~lr~~~~~~pii~lt~ 80 (121) T 2pl1_A 41 NEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (121) T ss_dssp HHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEES T ss_pred HCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEC T ss_conf 4589989998899999874789999996399981899978 No 85 >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Probab=79.29 E-value=3 Score=20.12 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=56.6 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) ++||||.|+....-|-.| ++.+.++ .+++++.|+.++.-..+ +.. -+++ |+..+ +... T Consensus 6 ~kpirvgiIG~G~~g~~~----~~~~~~~-~~~~~l~~i~d~~~~~~--~~~--~~~~---~~~~~----------~~~~ 63 (346) T 3cea_A 6 RKPLRAAIIGLGRLGERH----ARHLVNK-IQGVKLVAACALDSNQL--EWA--KNEL---GVETT----------YTNY 63 (346) T ss_dssp CCCEEEEEECCSTTHHHH----HHHHHHT-CSSEEEEEEECSCHHHH--HHH--HHTT---CCSEE----------ESCH T ss_pred CCCCEEEEECCHHHHHHH----HHHHHHC-CCCCEEEEEECCCHHHH--HHH--HHHC---CCCCC----------CCCH T ss_conf 997669999884999999----9999854-99968999987999999--999--9982---99851----------5999 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 861001288868985117765799998663013463111 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383) .+.+.+.++|+|+..-.|..+..++..+=+. |++|+- T Consensus 64 ~~ll~~~~vD~v~I~tp~~~h~~~~~~al~~--Gk~V~~ 100 (346) T 3cea_A 64 KDMIDTENIDAIFIVAPTPFHPEMTIYAMNA--GLNVFC 100 (346) T ss_dssp HHHHTTSCCSEEEECSCGGGHHHHHHHHHHT--TCEEEE T ss_pred HHHHCCCCCCEEEEECHHHHHHHHHHHHHHC--CCEEEE T ss_conf 9996489988899957176589999999864--985988 No 86 >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Probab=78.98 E-value=1.2 Score=22.80 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=25.4 Q ss_pred HCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 100128886898-5117765-7999986630134631111 Q gi|254780767|r 83 LIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 83 ~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) .+++.+||++++ +.-||.| +.+++.+|+..+..|++.. T Consensus 50 ~l~~~~~DlvilDi~mP~~dG~el~~~ir~~~~~~~iI~~ 89 (143) T 2qv0_A 50 FLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFI 89 (143) T ss_dssp HHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEE T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 9986699989987888889989999999954999808999 No 87 >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Probab=78.85 E-value=1.4 Score=22.35 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=28.7 Q ss_pred HCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 100128886898-5117765-79999866301346311110 Q gi|254780767|r 83 LIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 83 ~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383) .+.+++||++|+ +.-||.| +.+++.+|+..+.+|++-.- T Consensus 40 ~~~~~~~dlvilD~~mP~~~G~e~~~~ir~~~~~~pii~lt 80 (116) T 3a10_A 40 KFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLT 80 (116) T ss_dssp HHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEE T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEE T ss_conf 99847999899836889999999999998439989799998 No 88 >1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Probab=78.62 E-value=1.2 Score=22.85 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=27.5 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 0128886898-5117765-79999866301346311110 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383) .+++||++|+ +.-||.+ +.+.+.+|+...++|++-.- T Consensus 44 ~~~~~dliilD~~mP~~~G~el~~~ir~~~~~~pii~lt 82 (124) T 1srr_A 44 TKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMT 82 (124) T ss_dssp HHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEE T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 807998899853699998899999999609999899998 No 89 >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Probab=78.59 E-value=2 Score=21.39 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=45.4 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+..||+|+=-+++ ....+-+.|+. . ++++...... .+. T Consensus 1 M~~~~ILiVDDd~~---~r~~l~~~L~~-~--g~~v~~a~~~-----------------------------------~~a 39 (126) T 1dbw_A 1 MQDYTVHIVDDEEP---VRKSLAFMLTM-N--GFAVKMHQSA-----------------------------------EAF 39 (126) T ss_dssp CCCCEEEEEESSHH---HHHHHHHHHHH-T--TCEEEEESCH-----------------------------------HHH T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHH-C--CCEEEEECCH-----------------------------------HHH T ss_conf 99998999969999---99999999998-7--9999998999-----------------------------------999 Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 86100128886898-5117765-79999866301346311110 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383) .+.+.+.+||++|+ +.-||.| +.+.+.+|+..+++|+|..- T Consensus 40 l~~~~~~~~dlvi~D~~mP~~~G~~ll~~ir~~~~~~pvI~lT 82 (126) T 1dbw_A 40 LAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVIT 82 (126) T ss_dssp HHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEE T ss_pred HHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEE T ss_conf 9997637998797103688888299999999619998399996 No 90 >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis W83} Probab=77.66 E-value=3.4 Score=19.81 Aligned_cols=87 Identities=16% Similarity=0.295 Sum_probs=52.0 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 87459999768214789999999999738998399997178999478806504445311013674664599999999998 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTV 81 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~ 81 (383) ++.||.|+ | .|.+ |..+++.|.+ .+++++.|+-...-+..+. +...+.. +- T Consensus 8 kkirv~ii-G--~G~m-G~~~~~~l~~--~~~~elv~v~~~~~~~~~~----~~~~~~~-------------------~~ 58 (304) T 3bio_A 8 KKIRAAIV-G--YGNI-GRYALQALRE--APDFEIAGIVRRNPAEVPF----ELQPFRV-------------------VS 58 (304) T ss_dssp CCEEEEEE-C--CSHH-HHHHHHHHHH--CTTEEEEEEECC-----------CCTTSCE-------------------ES T ss_pred CCCEEEEE-C--CCHH-HHHHHHHHHC--CCCCEEEEEECCCHHHHHH----HCCCCCC-------------------HH T ss_conf 98479998-9--8699-9999999973--9994899998589888443----2268786-------------------76 Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 61001288868985117765799998663013463111 Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383) +.....++|++|....++++..+++.+=++ |++++- T Consensus 59 d~~~~~~~D~vi~~t~~~~~~~~~~~~l~~--g~~vv~ 94 (304) T 3bio_A 59 DIEQLESVDVALVCSPSREVERTALEILKK--GICTAD 94 (304) T ss_dssp SGGGSSSCCEEEECSCHHHHHHHHHHHHTT--TCEEEE T ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHHHH--CCCEEE T ss_conf 698635898799907954479999999983--897798 No 91 >2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Probab=77.01 E-value=0.71 Score=24.31 Aligned_cols=116 Identities=12% Similarity=0.175 Sum_probs=60.0 Q ss_pred CCCEEEEEE--CCCCHHHHHH--HHHHHHHHHCCCCEEEEEEC-CHH-HHHCCCEEEECHHHCCEEEHH----HHHHHHH Q ss_conf 874599997--6821478999--99999997389983999971-789-994788065044453110136----7466459 Q gi|254780767|r 2 NSLKIAVIA--GEISGDLLAG--DLIKSLKEMVSYPINLVGVG-GPS-LQKEGLVSLFDFSELSVIGIM----QVVRHLP 71 (383) Q Consensus 2 ~~mki~i~a--GE~SGD~~~a--~li~~Lk~~~~~~~~~~giG-G~~-m~~~G~~~~~~~~~l~v~G~~----evl~~~~ 71 (383) +++||-|++ |.+.| +.++ .++++.....+ ..+++|+= |=+ +-+...+.+.+++.-.+-++. -+|.. . T Consensus 96 ~~~rIgIltsGGdaPG-mNavIr~vv~~a~~~~~-~~~V~Gi~~G~~GLi~~~~~~~~~L~~~~v~~i~~~GGtiLGT-s 172 (487) T 2hig_A 96 TETTIGIVTCGGICPG-LNDVIRSITLTGINVYN-VKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGS-S 172 (487) T ss_dssp GGCEEEEEECSSCCTT-HHHHHHHHHHHHHHHHC-CSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCC-C T ss_pred CCCEEEEECCCCCCHH-HHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEECC-C T ss_conf 8858999885788476-89999999999999659-9389998411488605997541018999984088569706125-8 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEE---CHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 999999999861001288868985---1177657999986630134631111 Q gi|254780767|r 72 QFIFRINQTVELIVSSKPDVLLIV---DNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 72 ~~~~~~~~~~~~i~~~~Pd~vi~i---D~pgFnl~lak~lkk~~~~ipvi~y 120 (383) +...-.+++++.+++.+-|.+|.| |+-.--..|++++++++.+||+|.. T Consensus 173 R~~e~~~~i~~~L~~~~Id~LivIGGdgS~~~A~~Lae~~~~~~~~i~VIGI 224 (487) T 2hig_A 173 RGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGV 224 (487) T ss_dssp CSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEE T ss_pred CCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 9985699999999984998799956747899999999998862898329984 No 92 >3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Probab=76.83 E-value=1.5 Score=22.12 Aligned_cols=33 Identities=27% Similarity=0.622 Sum_probs=15.5 Q ss_pred CCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCE Q ss_conf 128886898-5117765-79999866301346311 Q gi|254780767|r 86 SSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPII 118 (383) Q Consensus 86 ~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi 118 (383) +++||+||+ +.-|+.| +-+.+.+|+..+.+|+| T Consensus 47 ~~~~dlvl~D~~mP~~~G~e~~~~i~~~~~~~pvi 81 (394) T 3eq2_A 47 SEQPDLVICDLRMPQIDGLELIRRIRQTASETPII 81 (394) T ss_dssp HSCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEE T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEE T ss_conf 38999999989789998999999998539998389 No 93 >1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Probab=76.68 E-value=3.6 Score=19.63 Aligned_cols=90 Identities=14% Similarity=0.237 Sum_probs=51.1 Q ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 9874599997-682147899999999997389983999971789994788065044453110136746645999999999 Q gi|254780767|r 1 MNSLKIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 1 m~~mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) |++|||.|+. |..+...| +.+++. .+++++.|+..+.-..+ +.. .+++ |+ .+. ...++ T Consensus 3 mkkikigiiG~G~~~~~~~----~~~l~~--~~~~~l~av~d~~~~~~--~~~--~~~~---~~-~~~-------~~~~~ 61 (319) T 1tlt_A 3 LKKLRIGVVGLGGIAQKAW----LPVLAA--ASDWTLQGAWSPTRAKA--LPI--CESW---RI-PYA-------DSLSS 61 (319) T ss_dssp --CEEEEEECCSTHHHHTH----HHHHHS--CSSEEEEEEECSSCTTH--HHH--HHHH---TC-CBC-------SSHHH T ss_pred CCCCEEEEEECCHHHHHHH----HHHHHH--CCCCEEEEEECCCHHHH--HHH--HHHH---CC-CCC-------CCHHH T ss_conf 8788899993889999999----999973--99968999988999999--999--9982---99-822-------88999 Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 986100128886898511776579999866301346311 Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) +. .+||+|+..-.|..+..+++.+=+. |++++ T Consensus 62 l~-----~~~D~V~I~tp~~~H~~~~~~al~~--gkhv~ 93 (319) T 1tlt_A 62 LA-----ASCDAVFVHSSTASHFDVVSTLLNA--GVHVC 93 (319) T ss_dssp HH-----TTCSEEEECSCTTHHHHHHHHHHHT--TCEEE T ss_pred HH-----CCCCEEEEECCCHHHHHHHHHHHHC--CCEEE T ss_conf 85-----6999999948866668999999861--98799 No 94 >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, ATP-binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} Probab=76.03 E-value=1.6 Score=22.04 Aligned_cols=39 Identities=18% Similarity=0.499 Sum_probs=27.7 Q ss_pred CCCCEEEEEECCCCHHHH-----HHHHHHHHHHHCCCCEEEEEEC Q ss_conf 987459999768214789-----9999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLL-----AGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~-----~a~li~~Lk~~~~~~~~~~giG 40 (383) |++|||.|++|..|.... |..+.++|++. ..++...++. T Consensus 1 m~k~ki~vl~GG~S~E~evSl~Sg~~v~~~L~~~-~~~v~~i~i~ 44 (364) T 3i12_A 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKT-RFDVVLLGID 44 (364) T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTT-TEEEEEEEEC T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCHH-CCEEEEEEEC T ss_conf 9987899996946873899999999999975654-7979999985 No 95 >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V} Probab=75.49 E-value=3.9 Score=19.43 Aligned_cols=93 Identities=11% Similarity=0.190 Sum_probs=57.0 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |++.|+-|+....=| .+.+.+|++. + ++++.|+..+....+ +.+. +++ |+.. .+... T Consensus 3 m~kik~giIG~G~i~----~~h~~~l~~~-~-~~~v~~v~d~~~~~~--~~~a--~~~---~~~~----------~~~~~ 59 (329) T 3evn_A 3 LSKVRYGVVSTAKVA----PRFIEGVRLA-G-NGEVVAVSSRTLESA--QAFA--NKY---HLPK----------AYDKL 59 (329) T ss_dssp --CEEEEEEBCCTTH----HHHHHHHHHH-C-SEEEEEEECSCSSTT--CC-----CC---CCSC----------EESCH T ss_pred CCCCEEEEECCHHHH----HHHHHHHHHC-C-CCEEEEEECCCHHHH--HHHH--HHC---CCCC----------EECCH T ss_conf 888689999884999----9999999868-9-928999988999999--9999--985---9980----------66899 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 86100128886898511776579999866301346311 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+.+.+.++|+|+..-.|..++.+++.+=+. |.+++ T Consensus 60 ~~ll~~~~~D~V~I~tp~~~H~~~~~~al~~--gk~vl 95 (329) T 3evn_A 60 EDMLADESIDVIYVATINQDHYKVAKAALLA--GKHVL 95 (329) T ss_dssp HHHHTCTTCCEEEECSCGGGHHHHHHHHHHT--TCEEE T ss_pred HHHHCCCCCCEEEECCCHHHHHHHHHHHHHC--CCEEE T ss_conf 9996288988899058266555778999987--99899 No 96 >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis} Probab=75.46 E-value=2.1 Score=21.13 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=6.5 Q ss_pred HCCCCCHHHHHHHHHHH Q ss_conf 20548989999999998 Q gi|254780767|r 327 FNSMIRSEALVRWIERL 343 (383) Q Consensus 327 iQ~~~~~~~i~~~~~~l 343 (383) ++.-++++.+...+... T Consensus 107 L~KP~~~~~L~~~i~~a 123 (154) T 2rjn_A 107 LLKPWEDEDVFKVVEKG 123 (154) T ss_dssp EESSCCHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHHH T ss_conf 88979999999999999 No 97 >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Probab=75.13 E-value=1.9 Score=21.41 Aligned_cols=34 Identities=12% Similarity=0.273 Sum_probs=24.7 Q ss_pred CCCCCCCEEEEECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 001288868985117765-7999986630134631111 Q gi|254780767|r 84 IVSSKPDVLLIVDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 84 i~~~~Pd~vi~iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) +...+||+|++ ||.| +.+.+.+|+....+|++-. T Consensus 58 l~~~~~DlviL---p~~~G~ell~~ir~~~~~~piiil 92 (137) T 2pln_A 58 MDIRNYDLVMV---SDKNALSFVSRIKEKHSSIVVLVS 92 (137) T ss_dssp HHHSCCSEEEE---CSTTHHHHHHHHHHHSTTSEEEEE T ss_pred HHCCCCCEEEE---ECCCCHHHHHHHHHCCCCCCEEEE T ss_conf 97289999998---278763799999962889975999 No 98 >3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Probab=74.90 E-value=2 Score=21.36 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=18.4 Q ss_pred CCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 128886898-5117765-7999986630134631111 Q gi|254780767|r 86 SSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 86 ~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) +++||++++ +.-||.| +.+.+.+|+..+.+|+|-. T Consensus 46 ~~~pdlillD~~mp~~~G~~l~~~ir~~~~~~piI~l 82 (137) T 3cfy_A 46 RSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137) T ss_dssp HHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 4799999983899999889999999974899848999 No 99 >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} Probab=74.54 E-value=1 Score=23.27 Aligned_cols=41 Identities=29% Similarity=0.415 Sum_probs=28.3 Q ss_pred HHHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 986100128886898-5117765-7999986630134631111 Q gi|254780767|r 80 TVELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) ..+.+.+.+||+|++ |.-|+.| +.+.+.+|+..+.+|++-. T Consensus 17 al~~~~~~~pdlv~~Di~mP~~~G~~~~~~i~~~~~~~~ii~~ 59 (237) T 3cwo_X 17 AVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVC 59 (237) T ss_dssp THHHHHHHCCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEE T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 9999984399999992878998999999999986899849999 No 100 >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A Probab=74.52 E-value=4.1 Score=19.27 Aligned_cols=91 Identities=7% Similarity=0.158 Sum_probs=55.7 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+++||.|+....-|..+.. ..++ . .+++++.++..++-++.+ +++ |.. +.+... T Consensus 3 ~~~ikigiIG~G~~~~~~~~---~~~~-~-~~~~~l~~v~~~~~~~~~-------~~~---~~~----------~~~~s~ 57 (358) T 3gdo_A 3 LDTIKVGILGYGLSGSVFHG---PLLD-V-LDEYQISKIMTSRTEEVK-------RDF---PDA----------EVVHEL 57 (358) T ss_dssp TTCEEEEEECCSHHHHHTTH---HHHT-T-CTTEEEEEEECSCHHHHH-------HHC---TTS----------EEESST T ss_pred CCCCEEEEEECCHHHHHHHH---HHHH-C-CCCCEEEEEECCCHHHHH-------HHC---CCC----------CEECCH T ss_conf 88867999909699999999---9982-3-899089999488999999-------867---998----------353999 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 86100128886898511776579999866301346311 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+.+.+..+|+|+..-.|.++..++..+=+. |++|+ T Consensus 58 ~ell~~~~~DaV~i~tp~~~H~~~~~~al~~--gk~V~ 93 (358) T 3gdo_A 58 EEITNDPAIELVIVTTPSGLHYEHTMACIQA--GKHVV 93 (358) T ss_dssp HHHHTCTTCCEEEECSCTTTHHHHHHHHHHT--TCEEE T ss_pred HHHHCCCCCCEEEECCCHHHHHHHHHHHHHC--CCEEE T ss_conf 9996599999999889768899999999865--99898 No 101 >2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A* Probab=74.50 E-value=4.1 Score=19.27 Aligned_cols=44 Identities=20% Similarity=0.180 Sum_probs=30.8 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC Q ss_conf 861001288868985117765799998663013463111100221100 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAW 128 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAW 128 (383) .+.|..-+||+||.-+ +++-.+.+.+++. ++|++++-..++..| T Consensus 53 ~E~I~~l~PDlIi~~~--~~~~~~~~~l~~~--~i~~~~~~~~~~~~~ 96 (260) T 2q8p_A 53 VEAVKKLKPTHVLSVS--TIKDEMQPFYKQL--NMKGYFYDFDSLKGM 96 (260) T ss_dssp HHHHHHTCCSEEEEEG--GGHHHHHHHHHHH--TSCCEEECCSSHHHH T ss_pred HHHHHHCCCCEEEECC--CCCHHHHHHHHHC--CCCEEECCCCCHHHH T ss_conf 9999725998897248--8608999999732--561663699999999 No 102 >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Probab=74.49 E-value=1.7 Score=21.76 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=14.1 Q ss_pred HHHCCCCCHHHHHHHHHHHHCC Q ss_conf 2420548989999999998449 Q gi|254780767|r 325 EYFNSMIRSEALVRWIERLSQD 346 (383) Q Consensus 325 EliQ~~~~~~~i~~~~~~ll~d 346 (383) .|+..-++++.+...+.+.++. T Consensus 112 ~yl~KP~~~~~L~~~i~~~l~~ 133 (153) T 3hv2_A 112 RYLSKPWDDQELLLALRQALEH 133 (153) T ss_dssp EEECSSCCHHHHHHHHHHHHHH T ss_pred CEEECCCCHHHHHHHHHHHHHH T ss_conf 7788989999999999999999 No 103 >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Probab=74.43 E-value=1.7 Score=21.84 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=54.4 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 87459999768214789999999999738998399997178999478806504445311013674664599999999998 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTV 81 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~ 81 (383) ++|||.|+.....|..+ .+..+++ .+++++.|+.....+.+ +..+ .+.. .+.... T Consensus 6 ~~irvgiIG~G~~g~~~---~~~~l~~--~~~~~lvav~d~~~~~~--~~~~--~~~~----------------~~~~~~ 60 (364) T 3e82_A 6 NTINIALIGYGFVGKTF---HAPLIRS--VPGLNLAFVASRDEEKV--KRDL--PDVT----------------VIASPE 60 (364) T ss_dssp -CEEEEEECCSHHHHHT---HHHHHHT--STTEEEEEEECSCHHHH--HHHC--TTSE----------------EESCHH T ss_pred CCCEEEEECCCHHHHHH---HHHHHHH--CCCCEEEEEECCCHHHH--HHHC--CCCC----------------EECCHH T ss_conf 98859999481999999---9999971--98958999988989999--9647--7997----------------579999 Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 6100128886898511776579999866301346311 Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) +.+....||+|+..--|.++..++.++=+. |++|+ T Consensus 61 ell~~~~iD~V~I~tp~~~H~~~~~~al~~--gkhV~ 95 (364) T 3e82_A 61 AAVQHPDVDLVVIASPNATHAPLARLALNA--GKHVV 95 (364) T ss_dssp HHHTCTTCSEEEECSCGGGHHHHHHHHHHT--TCEEE T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHHC--CCCCH T ss_conf 995599999899828778867888899864--99541 No 104 >3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2} Probab=74.34 E-value=1.8 Score=21.61 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=55.6 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) +|+.|+.|+....-|..| ++++++ .+++++.|+....-..+ +.. -+++ |+ +. +... T Consensus 3 ~~~lrvgiIG~G~~~~~h----~~~~~~--~~~~~v~~v~d~~~~~~--~~~--~~~~---~~----~~-------~~~~ 58 (354) T 3db2_A 3 YNPVGVAAIGLGRWAYVM----ADAYTK--SEKLKLVTCYSRTEDKR--EKF--GKRY---NC----AG-------DATM 58 (354) T ss_dssp CCCEEEEEECCSHHHHHH----HHHHTT--CSSEEEEEEECSSHHHH--HHH--HHHH---TC----CC-------CSSH T ss_pred CCCCEEEEECCCHHHHHH----HHHHHH--CCCCEEEEEECCCHHHH--HHH--HHHH---CC----CC-------CCCH T ss_conf 898449999383999999----999985--89948999988999999--999--9981---99----83-------3899 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 86100128886898511776579999866301346311 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+.+.+.++|+|+..-.|.++..+++.+-+. |++|+ T Consensus 59 ~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~--gk~V~ 94 (354) T 3db2_A 59 EALLAREDVEMVIITVPNDKHAEVIEQCARS--GKHIY 94 (354) T ss_dssp HHHHHCSSCCEEEECSCTTSHHHHHHHHHHT--TCEEE T ss_pred HHHHCCCCCCEEEECCCHHHHHHHHHHHHHC--CCEEE T ss_conf 9995699998899879778888889999978--99799 No 105 >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Probab=74.32 E-value=1.5 Score=22.14 Aligned_cols=19 Identities=0% Similarity=0.123 Sum_probs=8.4 Q ss_pred HHCCCCCHHHHHHHHHHHH Q ss_conf 4205489899999999984 Q gi|254780767|r 326 YFNSMIRSEALVRWIERLS 344 (383) Q Consensus 326 liQ~~~~~~~i~~~~~~ll 344 (383) |+..-++.+.+...+..++ T Consensus 137 yl~KP~~~~~L~~~i~~vl 155 (157) T 3hzh_A 137 FIVKPLDRAKVLQRVMSVF 155 (157) T ss_dssp EEESSCCHHHHHHHHHHTT T ss_pred EEECCCCHHHHHHHHHHHH T ss_conf 9979899999999999996 No 106 >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Probab=74.21 E-value=4.2 Score=19.22 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=56.7 Q ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE-------CCHHHHHCCCEEEEC---HH----------------HCCE Q ss_conf 999768214789999999999738998399997-------178999478806504---44----------------5311 Q gi|254780767|r 7 AVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV-------GGPSLQKEGLVSLFD---FS----------------ELSV 60 (383) Q Consensus 7 ~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi-------GG~~m~~~G~~~~~~---~~----------------~l~v 60 (383) |+.+|.++=|.- ..++++|.+. +-|+-=.|+ -||--|.+....+-. +. .+-. T Consensus 22 y~taG~P~~~~~-~~~l~~l~~~-GaD~iEiGiPfSDP~aDGpvIq~a~~~al~~g~~~~~~~~~~~~~r~~~~~~plvl 99 (268) T 1qop_A 22 FVTLGDPGIEQS-LKIIDTLIDA-GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGL 99 (268) T ss_dssp EEETTSSCHHHH-HHHHHHHHHT-TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEE T ss_pred EEECCCCCHHHH-HHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 881707987999-9999999977-99999978988886544799999999999789867998767887653178877899 Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHH Q ss_conf 0136746645999999999986100128886898511776-579999866301346311110022110036635579999 Q gi|254780767|r 61 IGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAY 139 (383) Q Consensus 61 ~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~ 139 (383) |+....+.++. ..+..+.+++..-|.+|.+|-|-= .-.+.+.+++. |+..|.+|+|+- ...|++.+.+. T Consensus 100 m~Y~N~i~~~G-----~~~f~~~~~~~Gv~GliipDlp~ee~~~~~~~~~~~--~l~~I~lvaPtt---~~~ri~~i~~~ 169 (268) T 1qop_A 100 LMYANLVFNNG-----IDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRH--NIAPIFICPPNA---DDDLLRQVASY 169 (268) T ss_dssp EECHHHHHTTC-----HHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHT--TCEEECEECTTC---CHHHHHHHHHH T ss_pred EEECCCCCCCC-----HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEEECCC---CHHHHHHHHHC T ss_conf 98525112378-----789999999749866651588856669999999735--982699982689---77889998725 No 107 >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Probab=74.02 E-value=1.6 Score=22.05 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=6.8 Q ss_pred CCCCHHHHHHHHHHHHC Q ss_conf 54898999999999844 Q gi|254780767|r 329 SMIRSEALVRWIERLSQ 345 (383) Q Consensus 329 ~~~~~~~i~~~~~~ll~ 345 (383) +.++++.|.+++...++ T Consensus 118 Kp~~~~~L~~aI~~~~~ 134 (152) T 3eul_A 118 KDSTRTEIVKAVLDCAK 134 (152) T ss_dssp TTCCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHC T ss_conf 99999999999999987 No 108 >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Probab=73.77 E-value=3.7 Score=19.56 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=22.7 Q ss_pred HCCCCCCCEEEEEC-HHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 10012888689851-17765-7999986630134631111 Q gi|254780767|r 83 LIVSSKPDVLLIVD-NPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 83 ~i~~~~Pd~vi~iD-~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) .+.+++||++|+ | -||.+ +.+.+++|+..+++|+|-. T Consensus 43 ~l~~~~~dlvll-D~mp~~dGl~l~~~ir~~~~~~piI~l 81 (142) T 2qxy_A 43 FLRREKIDLVFV-DVFEGEESLNLIRRIREEFPDTKVAVL 81 (142) T ss_dssp HHTTSCCSEEEE-ECTTTHHHHHHHHHHHHHCTTCEEEEE T ss_pred HHHHCCCCEEEE-CCCCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 998579999985-478631289999999986899978999 No 109 >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} Probab=73.62 E-value=1.5 Score=22.24 Aligned_cols=89 Identities=10% Similarity=0.177 Sum_probs=55.3 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 87459999768214789999999999738998399997178999478806504445311013674664599999999998 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTV 81 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~ 81 (383) +|.|+.|+....-|..| ++++++. + ++++.|+....-+.+- ... .+.. + +.... T Consensus 9 ~~irv~iiG~G~~g~~h----~~~~~~~-~-~~eiv~v~d~~~~~~~--~~~--~~~~---~-------------~~~~~ 62 (315) T 3c1a_A 9 SPVRLALIGAGRWGKNY----IRTIAGL-P-GAALVRLASSNPDNLA--LVP--PGCV---I-------------ESDWR 62 (315) T ss_dssp CCEEEEEEECTTTTTTH----HHHHHHC-T-TEEEEEEEESCHHHHT--TCC--TTCE---E-------------ESSTH T ss_pred CCEEEEEECCCHHHHHH----HHHHHHC-C-CCEEEEEECCCHHHHH--HHC--CCCC---C-------------CCCHH T ss_conf 99389999993999999----9999718-9-9489999879999999--753--5797---3-------------59999 Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 6100128886898511776579999866301346311 Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) +.+.+.++|+|+..-.|++|+.+++.+=+. |++|+ T Consensus 63 ell~~~~~D~V~I~tp~~~H~~~~~~al~~--gk~V~ 97 (315) T 3c1a_A 63 SVVSAPEVEAVIIATPPATHAEITLAAIAS--GKAVL 97 (315) T ss_dssp HHHTCTTCCEEEEESCGGGHHHHHHHHHHT--TCEEE T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHHH--CCCHH T ss_conf 995599999899928788879999999961--32211 No 110 >3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Probab=72.47 E-value=1.5 Score=22.10 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=45.8 Q ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH-------HHHCCCEEE-ECHHHCCEEEHHHHHHHHHH Q ss_conf 874599997-682147899999999997389983999971789-------994788065-04445311013674664599 Q gi|254780767|r 2 NSLKIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPS-------LQKEGLVSL-FDFSELSVIGIMQVVRHLPQ 72 (383) Q Consensus 2 ~~mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~-------m~~~G~~~~-~~~~~l~v~G~~evl~~~~~ 72 (383) .||||.|.+ |. |-.. ..|+++.+. +.++++.++..++ -++.|+... ++..+. +. T Consensus 11 ~p~riavl~SG~--Gsnl-~aLi~~~~~--~~~~~iv~vi~~~~~~~~~~A~~~gIp~~~i~~~~~------------~~ 73 (215) T 3da8_A 11 APARLVVLASGT--GSLL-RSLLDAAVG--DYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADH------------PS 73 (215) T ss_dssp SSEEEEEEESSC--CHHH-HHHHHHSST--TCSEEEEEEEESSCCHHHHHHHHTTCCEEECCGGGS------------SS T ss_pred CCCEEEEEECCC--CHHH-HHHHHHHCC--CCCCEEEEEEECCCHHHHHHHHHCCCCEEEEECCCC------------CC T ss_conf 988899998368--2659-999996377--999779999967856688999983997377405788------------99 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHH Q ss_conf 9999999986100128886898511776-57999986 Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRV 108 (383) Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~l 108 (383) --..-.++.+.+++.+||++|++.|+-. .-.+-+.. T Consensus 74 r~~~~~~l~~~l~~~~~Dliv~~g~~~il~~~~l~~~ 110 (215) T 3da8_A 74 RDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRF 110 (215) T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEECCSCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHH T ss_conf 9999999999987609999998461334688886422 No 111 >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Probab=71.67 E-value=2.6 Score=20.56 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=27.1 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 0128886898-5117765-79999866301346311110 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383) .+++||++++ +.-||.| +.+++.+|+. +.+|+|-.- T Consensus 42 ~~~~~dlil~D~~mp~~~G~~l~~~ir~~-~~ipiI~lt 79 (121) T 1zh2_A 42 ATRKPDLIILDLGLPDGDGIEFIRDLRQW-SAVPVIVLS 79 (121) T ss_dssp HHHCCSEEEEESEETTEEHHHHHHHHHTT-CCCCEEEEE T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCEEEEEE T ss_conf 71799999980999998979999999974-799099997 No 112 >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA; 2.00A {Aquifex aeolicus VF5} Probab=71.38 E-value=4.8 Score=18.79 Aligned_cols=119 Identities=14% Similarity=0.238 Sum_probs=49.2 Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEEEC---------H----------HH Q ss_conf 99997682147899999999997389983999971---------78999478806504---------4----------45 Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSLFD---------F----------SE 57 (383) Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~~~---------~----------~~ 57 (383) -|+.+|.++=|.-. .+++++-+. ++.+.-+| |+--|++....+-. + .. T Consensus 21 ~y~t~G~P~~~~~~-~~~~~l~~~---G~d~iElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~p 96 (262) T 2ekc_A 21 SYLMVGYPDYETSL-KAFKEVLKN---GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIP 96 (262) T ss_dssp EEEETTSSCHHHHH-HHHHHHHHT---TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSC T ss_pred EEEECCCCCHHHHH-HHHHHHHHC---CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 88828379868999-999999976---99999978999986544899999999999789977776654333102378878 Q ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHH Q ss_conf 3110136746645999999999986100128886898511776-579999866301346311110022110036635579 Q gi|254780767|r 58 LSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKM 136 (383) Q Consensus 58 l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~ 136 (383) +-+|+....+.++ -.++..+.+++..-|.+|..|-|-= .-.+...+++. |+..|.+|+|+- ...|++.+ T Consensus 97 ivlm~Y~N~i~~~-----G~~~f~~~~~~~Gv~gviipDlp~ee~~~~~~~~~~~--gl~~I~lvsp~t---~~~ri~~i 166 (262) T 2ekc_A 97 FLLMTYYNPIFRI-----GLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKY--VLSFVPLGAPTS---TRKRIKLI 166 (262) T ss_dssp EEEECCHHHHHHH-----CHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHT--TCEECCEECTTC---CHHHHHHH T ss_pred EEEEECCCHHHHC-----CHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC--CEEEEEECCCCC---HHHHHHHH T ss_conf 8999504344006-----7899999999769757861588667667777675205--544676358888---68888888 Q ss_pred HH Q ss_conf 99 Q gi|254780767|r 137 CA 138 (383) Q Consensus 137 ~~ 138 (383) .+ T Consensus 167 ~~ 168 (262) T 2ekc_A 167 CE 168 (262) T ss_dssp HH T ss_pred HH T ss_conf 75 No 113 >2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Probab=71.20 E-value=3.2 Score=19.95 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=28.6 Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHH--CCCCCCEEEE Q ss_conf 86100128886898-5117765-7999986630--1346311110 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKK--MPNLPIINYV 121 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~--~~~ipvi~yv 121 (383) .+.+.+++||++|+ +.-||.| +.+.+.+|+. ..++|+|... T Consensus 39 l~~l~~~~~dlii~D~~mp~~~G~~l~~~ir~~~~~~~~piI~ls 83 (127) T 2jba_A 39 VNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLT 83 (127) T ss_dssp HTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEE T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 999971799999981889996289999999847877999099998 No 114 >1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6 Probab=70.87 E-value=5 Score=18.72 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=42.4 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECH-HHHHH----HHHHH-----HHHHCCCCCCEEEECCCCCCC--CCCCHHH--H Q ss_conf 999999999986100128886898511-77657----99998-----663013463111100221100--3663557--9 Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDN-PDFTH----RVAKR-----VRKKMPNLPIINYVCPSVWAW--REGRARK--M 136 (383) Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~-pgFnl----~lak~-----lkk~~~~ipvi~yv~PqvWAW--r~~R~k~--~ 136 (383) -++....+.+.+.+.+++||.+..=|. -+-|. .++.. +-....++|+..|-+-|||-+ +.||+.| + T Consensus 42 ~Rl~~I~~~l~~ii~~~~pd~vaiE~~f~~~n~~sa~~l~~a~G~i~~~~~~~~i~i~~~~P~~vKk~vtG~G~A~K~qV 121 (158) T 1hjr_A 42 SRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 121 (158) T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSSSSCCHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHH T ss_conf 99999999999999713973536989886238889999999999999999985996013688999999857997799999 Q ss_pred HHHHHHHC Q ss_conf 99998640 Q gi|254780767|r 137 CAYINQVI 144 (383) Q Consensus 137 ~~~~d~~~ 144 (383) .+.+..++ T Consensus 122 ~~mv~~~l 129 (158) T 1hjr_A 122 QHMVRTLL 129 (158) T ss_dssp HHHHHHHT T ss_pred HHHHHHHC T ss_conf 99999981 No 115 >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} Probab=70.80 E-value=2.7 Score=20.44 Aligned_cols=36 Identities=14% Similarity=0.393 Sum_probs=21.5 Q ss_pred CCCCCCEEEE-ECHH-----HHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 0128886898-5117-----765-7999986630134631111 Q gi|254780767|r 85 VSSKPDVLLI-VDNP-----DFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 85 ~~~~Pd~vi~-iD~p-----gFn-l~lak~lkk~~~~ipvi~y 120 (383) ++.+||++++ +.-| |.+ +.+.+.+|+..+.+|+|-. T Consensus 44 ~~~~~dlillDl~mP~~~~~G~dGl~~l~~ir~~~~~ipvI~l 86 (140) T 2qr3_A 44 REENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLF 86 (140) T ss_dssp HHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEE T ss_pred HHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 7279999999168877776775199999999986899828999 No 116 >1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3 Probab=70.75 E-value=2.1 Score=21.14 Aligned_cols=33 Identities=12% Similarity=-0.037 Sum_probs=16.3 Q ss_pred EEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC Q ss_conf 05998538743012305111899987640273512620166 Q gi|254780767|r 194 KILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV 234 (383) Q Consensus 194 ~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~ 234 (383) .+.++--|+.+ +-++++++...++ +...+..+. T Consensus 92 vvI~iS~sG~t------~~~~~~~~~ak~~--g~~vI~IT~ 124 (200) T 1vim_A 92 VLVGISGSGET------TSVVNISKKAKDI--GSKLVAVTG 124 (200) T ss_dssp EEEEECSSSCC------HHHHHHHHHHHHH--TCEEEEEES T ss_pred EEEEECCCCCC------CCHHHHHHHHHHC--CCEEEEEEC T ss_conf 89985799774------2169999999987--996999979 No 117 >1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Probab=70.55 E-value=2.9 Score=20.31 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=25.3 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 0128886898-5117765-7999986630134631111 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) .+.+||++++ +.-||.| +.+++.+|+..+..|++.. T Consensus 44 ~~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~~ii~l 81 (136) T 1mvo_A 44 ETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILML 81 (136) T ss_dssp HHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 84599899826999999889999999854999859999 No 118 >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Probab=70.47 E-value=3.3 Score=19.88 Aligned_cols=23 Identities=0% Similarity=0.107 Sum_probs=16.7 Q ss_pred CCHHHCCCCCHHHHHHHHHHHHC Q ss_conf 61242054898999999999844 Q gi|254780767|r 323 VPEYFNSMIRSEALVRWIERLSQ 345 (383) Q Consensus 323 vPEliQ~~~~~~~i~~~~~~ll~ 345 (383) +-.|+.+-++++.|...+.++++ T Consensus 224 ~~~~l~KP~~~~~L~~~l~~~l~ 246 (254) T 2ayx_A 224 MDSCLSKPVTLDVIKQTLTLYAE 246 (254) T ss_dssp CEEEEESSCCHHHHHHHHHHHHH T ss_pred CCEEEECCCCHHHHHHHHHHHHH T ss_conf 98999798999999999999999 No 119 >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Probab=70.19 E-value=3.1 Score=20.03 Aligned_cols=124 Identities=16% Similarity=0.212 Sum_probs=61.4 Q ss_pred CCCCEEEEEECCCCHHHH-----HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECH--HHCCEEEHHHHHHHHHHH Q ss_conf 987459999768214789-----9999999997389983999971789994788065044--453110136746645999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLL-----AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDF--SELSVIGIMQVVRHLPQF 73 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~-----~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~--~~l~v~G~~evl~~~~~~ 73 (383) |..|||.|++|..|...- |..+.++|+ .+.....+.- .|.-.+.+. ..+..-...+.. T Consensus 1 m~~~kI~vl~GG~S~E~eiSl~Sa~~v~~~l~----~~~~~~~i~~-----~~~~~~~~~~~~~~~~~~~~~~~------ 65 (322) T 2fb9_A 1 MEFMRVLLIAGGVSPEHEVSLLSAEGVLRHIP----FPTDLAVIAQ-----DGRWLLGEKALTALEAKAAPEGE------ 65 (322) T ss_dssp CCCCCEEEEEECSSTTHHHHHHHHHHHHHHCS----SCEEEEEECT-----TSCEECHHHHHHHTTSSCCCCCC------ T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC----CCCCEEEEEC-----CCCEEECCCCHHHHHHCCCCCCH------ T ss_conf 99788999938787421989999999999669----8764799934-----78678436404332103576530------ Q ss_pred HHHHHHHHHHCCCCCCCEEEEEC--HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCH Q ss_conf 99999998610012888689851--1776579999866301346311110022110036635579999986401567742 Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVD--NPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEK 151 (383) Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD--~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~ 151 (383) +.+...+...++|+|+..= ..|=+-.++..+... |||.+. |. ....+-..|+.++ + T Consensus 66 ----~~~~~~~~~~~~D~vf~~~hG~~gEdg~~q~~le~~--gipy~G---s~--------~~~~~l~~DK~~~-----k 123 (322) T 2fb9_A 66 ----HPFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELL--GKPYVG---AG--------VAASALCMDKDLS-----K 123 (322) T ss_dssp ----BCSSCCCCCTTCSEEEEECCSTTTTSSHHHHHHHHH--TCCBSS---CC--------HHHHHHHHCHHHH-----H T ss_pred ----HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHC--CCCEEC---CC--------HHHHHHHCCHHHH-----H T ss_conf ----131566763389899999878754488999999983--998514---88--------7788774399999-----9 Q ss_pred HHHHCCCCCCE Q ss_conf 23200255314 Q gi|254780767|r 152 EVMQRLGGPPT 162 (383) Q Consensus 152 ~~f~k~~~~~~ 162 (383) .++++ .|+++ T Consensus 124 ~~l~~-~gIpt 133 (322) T 2fb9_A 124 RVLAQ-AGVPV 133 (322) T ss_dssp HHHHH-TTCCC T ss_pred HHHHH-CCCCC T ss_conf 99998-39985 No 120 >3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Probab=70.08 E-value=3.2 Score=19.95 Aligned_cols=82 Identities=12% Similarity=0.242 Sum_probs=46.4 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+.-||+|+--++. ....+.+.|++. ++++....... |. T Consensus 1 m~~~rILIVDD~~~---~~~~l~~~L~~~---G~~v~~a~~g~---------------------ea-------------- 39 (138) T 3c3m_A 1 MSLYTILVVDDSPM---IVDVFVTMLERG---GYRPITAFSGE---------------------EC-------------- 39 (138) T ss_dssp -CCCEEEEECSCHH---HHHHHHHHHHHT---TCEEEEESSHH---------------------HH-------------- T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHC---CCEEEEECCHH---------------------HH-------------- T ss_conf 99898999979999---999999999987---99999989999---------------------99-------------- Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHC--CCCCCEEEECC Q ss_conf 86100128886898-5117765-79999866301--34631111002 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKM--PNLPIINYVCP 123 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~--~~ipvi~yv~P 123 (383) .+.+.+++||++++ +.-||.+ +.+++.+|+.. .++|+|-..+. T Consensus 40 l~~l~~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~ipvI~ls~~ 86 (138) T 3c3m_A 40 LEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138) T ss_dssp HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEECC T ss_conf 99975389989997067899988999999984865589987998637 No 121 >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Probab=70.04 E-value=3.3 Score=19.91 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=25.7 Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHH--CCCCCCEEE Q ss_conf 00128886898-5117765-7999986630--134631111 Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKK--MPNLPIINY 120 (383) Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~--~~~ipvi~y 120 (383) +.+.+||+||+ +.-||.| +.+++.+|+. ...+|+|-. T Consensus 50 ~~~~~pDlillD~~mP~~dG~el~~~ir~~~~~~~ipvI~l 90 (143) T 3cnb_A 50 LHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAM 90 (143) T ss_dssp HHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEE T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEE T ss_conf 97279999998088899986999999984788899849999 No 122 >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Probab=70.03 E-value=3.5 Score=19.69 Aligned_cols=43 Identities=16% Similarity=0.415 Sum_probs=26.7 Q ss_pred HHHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHC--CCCCCEEEEC Q ss_conf 986100128886898-5117765-79999866301--3463111100 Q gi|254780767|r 80 TVELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKM--PNLPIINYVC 122 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~--~~ipvi~yv~ 122 (383) ..+.+...+||+||+ +.-||.+ +.+++.+|+.. ..+|+|..-+ T Consensus 43 al~~l~~~~~DlillD~~mP~~dG~el~~~ir~~~~~~~iPiI~lTa 89 (154) T 3gt7_A 43 AVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTI 89 (154) T ss_dssp HHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEEC T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEC T ss_conf 99999838999999808999998879999998584557995999982 No 123 >2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Probab=69.53 E-value=2.3 Score=20.98 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=12.1 Q ss_pred HHCCCCCHHHHHHHHHHHHCC Q ss_conf 420548989999999998449 Q gi|254780767|r 326 YFNSMIRSEALVRWIERLSQD 346 (383) Q Consensus 326 liQ~~~~~~~i~~~~~~ll~d 346 (383) |+.+-++++.+...+...+.. T Consensus 99 yl~KP~~~~~L~~~v~~~~~~ 119 (139) T 2jk1_A 99 FLTKPWHPEQLLSSARNAARM 119 (139) T ss_dssp EEESSCCHHHHHHHHHHHHHH T ss_pred EEECCCCHHHHHHHHHHHHHH T ss_conf 898999999999999999999 No 124 >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Probab=69.50 E-value=5.3 Score=18.53 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=24.9 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 8745999976821478999999999973899839999717 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG 41 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG 41 (383) ..|||+|..|- -..|+.|++.|.++ +.+++++.- T Consensus 11 ~~MKILVtGat---GfIG~~l~~~Ll~~---g~~V~~~~r 44 (321) T 2pk3_A 11 GSMRALITGVA---GFVGKYLANHLTEQ---NVEVFGTSR 44 (321) T ss_dssp --CEEEEETTT---SHHHHHHHHHHHHT---TCEEEEEES T ss_pred CCCEEEEECCC---CHHHHHHHHHHHHC---CCEEEEEEC T ss_conf 96679996788---88999999999988---498999808 No 125 >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY analysis, stability, calorimetry lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Probab=69.33 E-value=5.3 Score=18.51 Aligned_cols=120 Identities=17% Similarity=0.263 Sum_probs=62.9 Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCC-EEEEEE-------CCHHHHHCCCEEE---------EC-H--------HHCC Q ss_conf 9999768214789999999999738998-399997-------1789994788065---------04-4--------4531 Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYP-INLVGV-------GGPSLQKEGLVSL---------FD-F--------SELS 59 (383) Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~-~~~~gi-------GG~~m~~~G~~~~---------~~-~--------~~l~ 59 (383) -|+.+|-++=|..-. ++++|.+. -| +| .|+ -||--|++....+ ++ . ..+- T Consensus 9 ~y~~~G~P~~~~~~~-~l~~l~~g--~d~iE-iGiPfsDP~aDGpvIq~a~~~Al~~G~~~~~~~~~~~~~r~~~~~p~v 84 (248) T 1geq_A 9 PYLTAGDPDKQSTLN-FLLALDEY--AGAIE-LGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIV 84 (248) T ss_dssp EEEETTSSCHHHHHH-HHHHHGGG--BSCEE-EECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEE T ss_pred EEECCCCCCHHHHHH-HHHHHHCC--CCEEE-ECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEE T ss_conf 797171798789999-99998708--99999-788888866658999999999997798799999999999734698789 Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 10136746645999999999986100128886898511776-57999986630134631111002211003663557999 Q gi|254780767|r 60 VIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCA 138 (383) Q Consensus 60 v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~ 138 (383) +|+....+.++ -..+..+.+++..-|.+|.+|-|-- .-.+.+.+++. |+..+.+|+|+-= ..|++.+.+ T Consensus 85 lm~Y~N~i~~~-----G~~~f~~~~~~~Gv~g~iipDlp~ee~~~~~~~~~~~--gl~~i~lvsptt~---~~ri~~i~~ 154 (248) T 1geq_A 85 LMTYYNPIYRA-----GVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREE--GIKTVFLAAPNTP---DERLKVIDD 154 (248) T ss_dssp EEECHHHHHHH-----CHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHH--TCEEEEEECTTCC---HHHHHHHHH T ss_pred EEECCCCCCCC-----CHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC--CCCEEEEECCCCH---HHHHHHHHH T ss_conf 98066501235-----7999999998679857860578866766676565216--9515898578881---999987763 Q ss_pred H Q ss_conf 9 Q gi|254780767|r 139 Y 139 (383) Q Consensus 139 ~ 139 (383) . T Consensus 155 ~ 155 (248) T 1geq_A 155 M 155 (248) T ss_dssp H T ss_pred C T ss_conf 4 No 126 >3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H} Probab=68.25 E-value=3.7 Score=19.55 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=26.1 Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 00128886898-5117765-7999986630134631111 Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) +..++||++++ ++-|+.| +.+++.+|+.....|++-. T Consensus 42 l~~~~~dlillD~~mP~~dG~el~~~lr~~~~~~~iiil 80 (135) T 3eqz_A 42 LSLNKQDIIILDLMMPDMDGIEVIRHLAEHKSPASLILI 80 (135) T ss_dssp SCCCTTEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEE T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEE T ss_conf 865899999985999999899999999952999979999 No 127 >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Probab=67.95 E-value=5.7 Score=18.32 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=25.1 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 98745999976821478999999999973899839999717 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG 41 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG 41 (383) || |+.+++|-.|| .|..+.+.|-++ +.++-+.+... T Consensus 1 M~--KvalVTGas~G--IG~aiA~~la~~-Ga~V~~~~~~~ 36 (258) T 3a28_C 1 MS--KVAMVTGGAQG--IGRGISEKLAAD-GFDIAVADLPQ 36 (258) T ss_dssp -C--CEEEEETTTSH--HHHHHHHHHHHH-TCEEEEEECGG T ss_pred CC--CEEEEECCCCH--HHHHHHHHHHHC-CCEEEEEECCC T ss_conf 99--89999078868--999999999987-99899995898 No 128 >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Probab=67.71 E-value=3.4 Score=19.77 Aligned_cols=37 Identities=22% Similarity=0.573 Sum_probs=25.3 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHC--CCCCCEEEE Q ss_conf 0128886898-5117765-79999866301--346311110 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKM--PNLPIINYV 121 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~--~~ipvi~yv 121 (383) ++++||+|++ +.-||.| +.+.+.+|+.. .++|++-.- T Consensus 42 ~~~~pdlillD~~mp~~~G~el~~~ir~~~~~~~iPii~ls 82 (124) T 1mb3_A 42 RENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVT 82 (124) T ss_dssp HHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 83799999978999998479999999828877999689998 No 129 >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A* Probab=67.69 E-value=4 Score=19.36 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=53.4 Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-------CHHHHHCCCEEEEC---H---------------HHCCE Q ss_conf 99997682147899999999997389983999971-------78999478806504---4---------------45311 Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG-------GPSLQKEGLVSLFD---F---------------SELSV 60 (383) Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG-------G~~m~~~G~~~~~~---~---------------~~l~v 60 (383) -|+.||.+|=|.-. +++++|.+. -|+-=.|+- ||--|.+....+-+ + ..+=+ T Consensus 20 ~YltaG~P~~~~~~-~~l~~l~~g--aDiiEiGiPfSDP~aDGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~p~vl 96 (271) T 1ujp_A 20 PYLTAGFPSREGFL-QAVEEVLPY--ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFL 96 (271) T ss_dssp EEEETTSSCHHHHH-HHHHHHGGG--CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEE T ss_pred EEEECCCCCHHHHH-HHHHHHHCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 89827089878999-999997669--998996899888665569999999888867996688999999986237975599 Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 0136746645999999999986100128886898511776-57999986630134631111002211003663557999 Q gi|254780767|r 61 IGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCA 138 (383) Q Consensus 61 ~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~ 138 (383) ||.+..+.++ -.++..+.+++..-|.+|++|-|-= .-.+...+++. |+..|.+|+|+- .+.|++.+.+ T Consensus 97 M~Y~N~~~~~-----G~~~F~~~~~~aGvdG~iipDLP~ee~~~~~~~~~~~--gl~~I~lvaPtt---~~~Ri~~i~~ 165 (271) T 1ujp_A 97 MTYLNPVLAW-----GPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEI--GLETVFLLAPTS---TDARIATVVR 165 (271) T ss_dssp ECCHHHHHHH-----CHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHH--TCEEECEECTTC---CHHHHHHHHT T ss_pred EEECCHHHHC-----CHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHHHH T ss_conf 9844424416-----7378889998739842324778522137899999856--986799947888---5789999997 No 130 >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Probab=67.52 E-value=4.9 Score=18.77 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=20.2 Q ss_pred CCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEE Q ss_conf 128886898-5117765-799998663013463111 Q gi|254780767|r 86 SSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 86 ~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~ 119 (383) ..+||++++ +.-||.| +.+.+.+|+..+++|++- T Consensus 48 ~~~~DlvllD~~mP~~~G~e~l~~ir~~~p~~~iiv 83 (154) T 2qsj_A 48 DNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVAL 83 (154) T ss_dssp TCCCSEEEECC------CHHHHHHHHHHCTTSEEEE T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEE T ss_conf 599978998088899888999999998788997999 No 131 >2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A Probab=67.46 E-value=4.1 Score=19.26 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=11.7 Q ss_pred EEEEEECCCCCCHHHHCCCHHHHHHHHHHC Q ss_conf 059985387430123051118999876402 Q gi|254780767|r 194 KILLLPGSRAQEIYKILPFFESAVASLVKR 223 (383) Q Consensus 194 ~I~llPGSR~~EI~~~lP~~l~~~~~l~~~ 223 (383) ++..+-+|..+ |-.+++++.-.++ T Consensus 134 vli~iS~SG~s------~nvi~al~~Ak~~ 157 (212) T 2i2w_A 134 VLLGISTSGNS------ANVIKAIAAAREK 157 (212) T ss_dssp EEEEECSSSCC------HHHHHHHHHHHHH T ss_pred EEEEEECCCCC------CCHHHHHHHHHHC T ss_conf 79998089998------3289999999985 No 132 >2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12} Probab=67.44 E-value=5.8 Score=18.26 Aligned_cols=55 Identities=7% Similarity=0.105 Sum_probs=39.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 3674664599999999998610012888689851177657999986630134631111 Q gi|254780767|r 63 IMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 63 ~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) +..++.+--.+....+.+.+.+...+||.++++++-||-+--+=..+ .++|+++- T Consensus 38 i~~il~dP~~~~~v~~~la~~~~~~~~D~Iv~~e~~Gi~la~~lA~~---l~~p~v~~ 92 (190) T 2dy0_A 38 VTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALG---LGVGFVPV 92 (190) T ss_dssp THHHHHCHHHHHHHHHHHHHHHTTTTCCEEEEETTHHHHHHHHHHHH---HTCEEEEE T ss_pred CCHHHCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCCCEEEE T ss_conf 98276699999999999999840689999997353431206899997---59986987 No 133 >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Probab=67.23 E-value=5.9 Score=18.23 Aligned_cols=88 Identities=11% Similarity=0.127 Sum_probs=47.7 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH Q ss_conf 45999976821478999999999973899839999717-89994788065044453110136746645999999999986 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG-PSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG-~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383) |||+|+.+. |=-| .|..+|++. +.-.+++-+-| +.|...+-...+|. .-...+.+ T Consensus 1 mkvliiG~G--grEh--a~~~~l~~~-~~~~~~~~~~~N~g~~~~~~~~~~~~-------------------~d~~~i~~ 56 (424) T 2yw2_A 1 MKVLVVGNG--GREH--AIAWKVAQS-PLVKELYVAKGNAGIWEIAKRVDISP-------------------TDVEKLAE 56 (424) T ss_dssp CEEEEEESS--HHHH--HHHHHHTTC-TTCSEEEEEECCTTGGGTSEEECSCT-------------------TCHHHHHH T ss_pred CEEEEECCC--HHHH--HHHHHHHHC-CCCCEEEEECCCHHHHHHCCEEEECC-------------------CCHHHHHH T ss_conf 989998958--9999--999999858-99888999889888985430086288-------------------99999999 Q ss_pred HCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCE Q ss_conf 100128886898511776-579999866301346311 Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPII 118 (383) Q Consensus 83 ~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi 118 (383) .+++++||.||. ...+. ..-+|..+++. |||++ T Consensus 57 ~~~~~~id~vi~-g~e~~l~~~~a~~l~~~--gi~~~ 90 (424) T 2yw2_A 57 FAKNEGVDFTIV-GPEAPLVEGIVDEFEKR--GLKIF 90 (424) T ss_dssp HHHHHTCSEEEE-CSHHHHHTTHHHHHHHT--TCCEE T ss_pred HHHHHCCCEEEE-CCCHHHHHHHHHHHHHC--CCCCC T ss_conf 999969999998-98478888899999867--98313 No 134 >2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Probab=66.63 E-value=6 Score=18.15 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=13.9 Q ss_pred HHHHHHHHCCCEEEECCCC Q ss_conf 6688876275302540577 Q gi|254780767|r 278 VILELALCGIPVVSIYKSE 296 (383) Q Consensus 278 aTLE~al~g~P~IV~Yk~~ 296 (383) |-.||..+|+|.|-+-.++ T Consensus 173 AI~EA~~l~IPvIaivDTn 191 (256) T 2vqe_B 173 AVREARKLFIPVIALADTD 191 (256) T ss_dssp HHHHHHHTTCCCEECCCTT T ss_pred HHHHHHHHCCCEEEEECCC T ss_conf 9999998589557761389 No 135 >3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} Probab=66.62 E-value=6 Score=18.15 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=47.0 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCC----------EEEECHHHCCEEEHH--HHHHHHHHHHHHHHHHHHH Q ss_conf 7899999999997389983999971789994788----------065044453110136--7466459999999999861 Q gi|254780767|r 16 DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGL----------VSLFDFSELSVIGIM--QVVRHLPQFIFRINQTVEL 83 (383) Q Consensus 16 D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~----------~~~~~~~~l~v~G~~--evl~~~~~~~~~~~~~~~~ 83 (383) +.-++.++.+.-.+ +..+.++|.|+..+-+.-+ ..+.+.......+.. ..+-..+.+ ..+..+. T Consensus 28 i~~aa~~ia~~i~~-~~rI~i~G~G~S~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~ 103 (243) T 3cvj_A 28 IIKGAHLVSEAVMN-GGRFYVFGSGHSHMIAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGL---SKSYLKL 103 (243) T ss_dssp HHHHHHHHHHHHHT-TCCEEEEESGGGHHHHHHTSSSTTCBTTEEECCCGGGSSSSSTTHHHHHTTCTTH---HHHHHHH T ss_pred HHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHH T ss_conf 99999999999975-9989999278412779999998478876552235421245524566676645568---9999998 Q ss_pred CCCCCCCEEEEECHHHHH---HHHHHHHHHHCCCCCCEEEEC Q ss_conf 001288868985117765---799998663013463111100 Q gi|254780767|r 84 IVSSKPDVLLIVDNPDFT---HRVAKRVRKKMPNLPIINYVC 122 (383) Q Consensus 84 i~~~~Pd~vi~iD~pgFn---l~lak~lkk~~~~ipvi~yv~ 122 (383) ..-.+=|++|.|-+.|=| +..++.+|++ |+|+|-..+ T Consensus 104 ~~i~~~DvvI~iS~SG~t~~vi~a~~~AK~~--G~~vIaIT~ 143 (243) T 3cvj_A 104 HQVTNKDVIMIISNSGRNTVPVEMAIESRNI--GAKVIAMTS 143 (243) T ss_dssp TTCCTTCEEEEECSSCCSHHHHHHHHHHHHH--TCEEEEEEC T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHC--CCEEEEEEC T ss_conf 0799999999977899999999999999987--994999808 No 136 >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Probab=65.95 E-value=6.2 Score=18.07 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=21.7 Q ss_pred CCCCCEEEEECHHHH-HHH--HHHHHHHHCCCCCCEEEEC Q ss_conf 128886898511776-579--9998663013463111100 Q gi|254780767|r 86 SSKPDVLLIVDNPDF-THR--VAKRVRKKMPNLPIINYVC 122 (383) Q Consensus 86 ~~~Pd~vi~iD~pgF-nl~--lak~lkk~~~~ipvi~yv~ 122 (383) ..+|-++++.--||. |+- ++..-. -++|++...+ T Consensus 92 tg~pgv~~~TsGpG~~N~~~ai~~A~~---~~~Pll~itg 128 (604) T 2x7j_A 92 KQRPVLLICTSGTAAANFYPAVVEAHY---SRVPIIVLTA 128 (604) T ss_dssp HTSCEEEEECSSHHHHTTHHHHHHHHH---HTCCEEEEEE T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHH---HCCCEEEEEC T ss_conf 599699998515679989999999963---1998599948 No 137 >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Probab=65.60 E-value=6.3 Score=18.02 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=47.7 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 8745999976821478999999999973899839999-717899947880650444531101367466459999999999 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVG-VGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~g-iGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |.|||+|+-+. |--| .|..+|++ .+.--+++- -|-+.+.....-.-.++... -...+ T Consensus 2 ~~MkvLviGsG--gREh--Aia~~l~~-s~~~~~v~~~pgN~g~~~~~~~~~~~~~~~-----------------d~~~i 59 (431) T 3mjf_A 2 NAMNILIIGNG--GREH--ALGWKAAQ-SPLADKIYVAPGNAGTALEPTLENVDIAAT-----------------DIAGL 59 (431) T ss_dssp -CEEEEEEECS--HHHH--HHHHHHTT-CTTEEEEEEEECCHHHHHCTTCEECCCCTT-----------------CHHHH T ss_pred CCCEEEEECCC--HHHH--HHHHHHHH-CCCCCEEEEECCCHHHHHHCCCEEECCCCC-----------------CHHHH T ss_conf 97789998978--9999--99999975-989897999689726653066545246866-----------------99999 Q ss_pred HHHCCCCCCCEEEE-ECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 86100128886898-511776579999866301346311 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+.++++++|+||. =+.| ...-++-.+++. |+|++ T Consensus 60 ~~~~~~~~idlvivgpe~p-L~~Gl~D~l~~~--gi~vf 95 (431) T 3mjf_A 60 LAFAQSHDIGLTIVGPEAP-LVIGVVDAFRAA--GLAIF 95 (431) T ss_dssp HHHHHHTTEEEEEECSHHH-HHTTHHHHHHHT--TCCEE T ss_pred HHHHHHCCCCEEEECCCHH-HHHHHHHHHHHC--CCCEE T ss_conf 9999982999899897489-887799999747--99333 No 138 >2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A Probab=65.57 E-value=6.3 Score=18.02 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=23.7 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9874599997682147899999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |+.|||+|.+ .++|--+-..|++.|+++ +.++.-+| T Consensus 1 m~~MKI~igs-DhaG~~lK~~l~~~L~~~---g~ev~D~G 36 (162) T 2vvp_A 1 MSGMRVYLGA-DHAGYELKQRIIEHLKQT---GHEPIDCG 36 (162) T ss_dssp --CCEEEEEE-CHHHHHHHHHHHHHHHHT---TCEEEECS T ss_pred CCCCEEEEEE-CCCHHHHHHHHHHHHHHC---CCEEEECC T ss_conf 9998999983-880799999999999987---99899679 No 139 >1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structural genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli O157} SCOP: c.34.1.1 Probab=65.51 E-value=6.3 Score=18.01 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=27.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 45999976821478999999999973899839999717 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG 41 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG 41 (383) |||.+-.-.+||=.+|.++++.|++.. ++++.-+-- T Consensus 1 MrIvvgITGasga~~a~~ll~~L~~~~--g~eV~vV~T 36 (197) T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMP--NVETHLVMS 36 (197) T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCT--TCEEEEEEC T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCC--CCEEEEEEC T ss_conf 989999711899999999999997338--987999998 No 140 >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Probab=65.20 E-value=6.4 Score=17.97 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=58.3 Q ss_pred CCCCEEEEEECCCCH-------HHHH----------------------HHHHHHHHHHCCCCEEEEEECCHHHHHCCCEE Q ss_conf 987459999768214-------7899----------------------99999999738998399997178999478806 Q gi|254780767|r 1 MNSLKIAVIAGEISG-------DLLA----------------------GDLIKSLKEMVSYPINLVGVGGPSLQKEGLVS 51 (383) Q Consensus 1 m~~mki~i~aGE~SG-------D~~~----------------------a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~ 51 (383) |.+|||-|+.|..+| |+.- +.+++.+.+..+.++++.+-...+=.=.|.+. T Consensus 1 m~~~KI~iIGaGs~~~~~~~~~~~~~~~~l~~~ei~L~Did~~rl~~~~~~~~~~~~~~~~~~~i~~ttd~~~al~~adf 80 (480) T 1obb_A 1 MPSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF 80 (480) T ss_dssp -CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCE T ss_conf 99865999998733306999999984757899989998698779999999999999872998289996889998479999 Q ss_pred EECHH---------------------------HCCEE---EHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE-CHHHH Q ss_conf 50444---------------------------53110---1367466459999999999861001288868985-11776 Q gi|254780767|r 52 LFDFS---------------------------ELSVI---GIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIV-DNPDF 100 (383) Q Consensus 52 ~~~~~---------------------------~l~v~---G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~i-D~pgF 100 (383) ++..- +.... |++..++++ ..+.++.+.+++..||+.++. -.|- T Consensus 81 Vi~t~~vgg~~~~~~~~~i~ek~gl~~~~~gqe~~~~G~gg~~~alrti----pv~~~i~~~i~~~~P~A~iin~tNP~- 155 (480) T 1obb_A 81 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQL----KYFVDIARKIEKLSPKAWYLQAANPI- 155 (480) T ss_dssp EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHH----HHHHHHHHHHHHHCTTCEEEECSSCH- T ss_pred EEEEEECCCCCCCHHHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHCCCH----HHHHHHHHHHHHHCCCEEEEEECCCH- T ss_conf 9983432886410355643333061027687525787732666313358----99999999999869984999956816- Q ss_pred HHHHHHHHHHHCCCCCCEEEECCC Q ss_conf 579999866301346311110022 Q gi|254780767|r 101 THRVAKRVRKKMPNLPIINYVCPS 124 (383) Q Consensus 101 nl~lak~lkk~~~~ipvi~yv~Pq 124 (383) -.+...+++. .++|++= +|-. T Consensus 156 -~ivt~a~~~~-~~~~~iG-lC~~ 176 (480) T 1obb_A 156 -FEGTTLVTRT-VPIKAVG-FCHG 176 (480) T ss_dssp -HHHHHHHHHH-SCSEEEE-ECSG T ss_pred -HHHHHHHHHC-CCCEEEE-ECCC T ss_conf -9999998643-6652898-5798 No 141 >2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Probab=64.85 E-value=6.5 Score=17.93 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=44.3 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC-H-----------HHHHCCCEEEECHHHCCEEEHHHHHH Q ss_conf 98745999976821478999999999973899839999717-8-----------99947880650444531101367466 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG-P-----------SLQKEGLVSLFDFSELSVIGIMQVVR 68 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG-~-----------~m~~~G~~~~~~~~~l~v~G~~evl~ 68 (383) |++|||.+..- +-.|....++|.+. +.++.||-- | .-++.|+..+ ..+.+..-. T Consensus 20 ~~~mkIvf~G~----~~f~~~~l~~L~~~---~~~i~~V~T~pdk~~~~~~v~~~a~~~~ipv~-~~~~~~~~~------ 85 (329) T 2bw0_A 20 FQSMKIAVIGQ----SLFGQEVYCHLRKE---GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVF-KYSRWRAKG------ 85 (329) T ss_dssp -CCCEEEEECC----HHHHHHHHHHHHHT---TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEE-ECSCCEETT------ T ss_pred HHCCEEEEECC----CHHHHHHHHHHHHC---CCCEEEEEECCCCCCCCCHHHHHHHHHCCCEE-CCCCCCCCC------ T ss_conf 22308999969----79999999999988---89789999089988898969999998199886-443367612------ Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH Q ss_conf 45999999999986100128886898511776 Q gi|254780767|r 69 HLPQFIFRINQTVELIVSSKPDVLLIVDNPDF 100 (383) Q Consensus 69 ~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF 100 (383) ....++.+.+++.+||++|.+.|+.+ T Consensus 86 ------~~~~e~~~~l~~~~~Dl~v~~~~~~i 111 (329) T 2bw0_A 86 ------QALPDVVAKYQALGAELNVLPFCSQF 111 (329) T ss_dssp ------EECHHHHHHHHTTCCSEEEESSCSSC T ss_pred ------CCCHHHHHHHHHHCCCEEEEECCHHH T ss_conf ------04899999999629699999061243 No 142 >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630} Probab=64.34 E-value=5 Score=18.72 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=23.5 Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 00128886898-5117765-79999866301346311110 Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383) +.+++||++++ +.-||.| +.+.+.+++. ..+|+|... T Consensus 44 l~~~~~dlillD~~mP~~dG~el~~~~~~~-~~~piI~lt 82 (136) T 2qzj_A 44 IFSNKYDLIFLEIILSDGDGWTLCKKIRNV-TTCPIVYMT 82 (136) T ss_dssp HHHCCCSEEEEESEETTEEHHHHHHHHHTT-CCCCEEEEE T ss_pred HHHCCCCEEEECCCCCCCCCHHHHHHHHHC-CCCCEEEEE T ss_conf 862799999977999899860799999836-999899999 No 143 >3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Probab=64.26 E-value=4.7 Score=18.86 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=9.6 Q ss_pred HHHHH-HHHHHHHHHHCCCCCCEE Q ss_conf 17765-799998663013463111 Q gi|254780767|r 97 NPDFT-HRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 97 ~pgFn-l~lak~lkk~~~~ipvi~ 119 (383) -||.| +.+.+.+|+..+.+|+|- T Consensus 58 mP~~~G~ell~~ir~~~~~~~vI~ 81 (151) T 3kcn_A 58 MPGMEGTEVIQKARLISPNSVYLM 81 (151) T ss_dssp CSSSCHHHHHHHHHHHCSSCEEEE T ss_pred CCCCCCHHHHHHHHHHCCCCCEEE T ss_conf 889870899999998689996899 No 144 >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=64.01 E-value=6.8 Score=17.83 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=28.2 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9874599997682147899999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |++ |..+++|-.|| +|..+.+.|-++ +.+..++..+ T Consensus 1 Ms~-K~ilITGas~G--IG~a~a~~La~~-G~~~~Vi~~~ 36 (250) T 1yo6_A 1 MSP-GSVVVTGANRG--IGLGLVQQLVKD-KNIRHIIATA 36 (250) T ss_dssp CCC-SEEEESSCSSH--HHHHHHHHHHTC-TTCCEEEEEE T ss_pred CCC-CEEEEECCCCH--HHHHHHHHHHHC-CCCCEEEEEE T ss_conf 968-99999488879--999999999977-9987899996 No 145 >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Probab=63.84 E-value=4.7 Score=18.85 Aligned_cols=36 Identities=11% Similarity=0.319 Sum_probs=22.9 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 0128886898-5117765-79999866301346311110 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383) .+++||++|+ ++-||.+ +.+.+.+++. .++|++... T Consensus 44 ~~~~~dlii~D~~lP~~~g~e~~~~~~~~-~~~pii~lt 81 (123) T 1xhf_A 44 SEYDINLVIMDINLPGKNGLLLARELREQ-ANVALMFLT 81 (123) T ss_dssp HHSCCSEEEECSSCSSSCHHHHHHHHHHH-CCCEEEEEE T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHC-CCCCEEEEE T ss_conf 70899999996899984499999999856-999789999 No 146 >3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} Probab=63.77 E-value=4 Score=19.33 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=50.1 Q ss_pred CCCE-EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 8745-999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 2 NSLK-IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 2 ~~mk-i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |.|| +.|+..-..-+-+|..+++.|++. + .+++.|.-..- . +.|+- + |+ .+ T Consensus 2 ~~~K~iaVvGaS~~~~k~g~~v~~~L~~~-G--~~V~pVnP~~~------~--------I~G~~-~---~~-------sl 53 (122) T 3ff4_A 2 NAMKKTLILGATPETNRYAYLAAERLKSH-G--HEFIPVGRKKG------E--------VLGKT-I---IN-------ER 53 (122) T ss_dssp CCCCCEEEETCCSCTTSHHHHHHHHHHHH-T--CCEEEESSSCS------E--------ETTEE-C---BC-------SC T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHC-C--CEEEEECCCCC------C--------CCEEE-E---EE-------CC T ss_conf 97664999966699998299999999978-9--98999888776------1--------00058-9---97-------45 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 8610012888689851177657999986630134631111 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) + .-..||+++..--|.....+.+.+.++ |++.+++ T Consensus 54 -~--~p~~iD~v~i~~p~~~~~~~v~e~~~~--g~k~vw~ 88 (122) T 3ff4_A 54 -P--VIEGVDTVTLYINPQNQLSEYNYILSL--KPKRVIF 88 (122) T ss_dssp -C--CCTTCCEEEECSCHHHHGGGHHHHHHH--CCSEEEE T ss_pred -C--CCCCCCEEEEEECHHHHHHHHHHHHHC--CCCEEEE T ss_conf -5--678875799995889989999999853--9999999 No 147 >1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Probab=63.68 E-value=3 Score=20.19 Aligned_cols=39 Identities=31% Similarity=0.586 Sum_probs=22.5 Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 6100128886898-5117765-7999986630134631111 Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) +.+.+.+||++|+ +.-||.+ +.+.+.+|+..+.+|++.. T Consensus 41 ~~l~~~~~dlii~D~~lp~~~G~el~~~l~~~~~~~pii~~ 81 (124) T 1dc7_A 41 AALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (124) T ss_dssp HHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCB T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEE T ss_conf 99983899999875889998459999999985899919999 No 148 >1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Probab=63.17 E-value=5 Score=18.72 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=19.4 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEE Q ss_conf 0128886898-5117765-799998663013463111 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~ 119 (383) ...+||++++ ++-||.+ +.+.+.+++..+..|++- T Consensus 48 ~~~~pdlvllD~~lp~~~G~~~~~~~~~~~~~~~iiv 84 (215) T 1a04_A 48 ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVV 84 (215) T ss_dssp HHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEE T ss_pred HHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 7469968999688899898623210112456655434 No 149 >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Probab=63.13 E-value=4.4 Score=19.07 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=15.1 Q ss_pred CCCCEEEE-ECHHHHH-HHHHHHHHHH--CCCCCCEE Q ss_conf 28886898-5117765-7999986630--13463111 Q gi|254780767|r 87 SKPDVLLI-VDNPDFT-HRVAKRVRKK--MPNLPIIN 119 (383) Q Consensus 87 ~~Pd~vi~-iD~pgFn-l~lak~lkk~--~~~ipvi~ 119 (383) ++||++|+ ++-||.+ +.+++.+|+. ...+|+|- T Consensus 49 ~~~dlvilD~~mP~~dG~~l~~~ir~~~~~~~~pii~ 85 (140) T 3grc_A 49 RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140) T ss_dssp SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEE T ss_conf 8998998536689997899999998472569997899 No 150 >3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396} Probab=63.06 E-value=6.3 Score=18.01 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=22.3 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHC--CCCCCEEE Q ss_conf 0128886898-5117765-79999866301--34631111 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKM--PNLPIINY 120 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~--~~ipvi~y 120 (383) .+.+||++|+ +.-|+.| +.+++.+|+.. .++|+|-. T Consensus 48 ~~~~~dliilD~~mP~~~G~el~~~ir~~~~~~~iPiI~l 87 (144) T 3kht_A 48 QQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVIL 87 (144) T ss_dssp TTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEE T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEE T ss_conf 7179999998699999999999999983787899918999 No 151 >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, PSI; HET: MSE; 2.00A {Enterococcus faecalis V583} Probab=62.77 E-value=5.7 Score=18.31 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=35.3 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH---HHHHCCCEEEEC Q ss_conf 87459999768214789999999999738998399997178---999478806504 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGP---SLQKEGLVSLFD 54 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~---~m~~~G~~~~~~ 54 (383) |+|||.|+-...=|=.+|+.|.++ +.++.+++-+.. .+++.|+....+ T Consensus 2 ~~MkI~IiGaGaiG~~~a~~La~~-----G~~V~lv~r~~~~~e~i~~~Gl~~~~~ 52 (316) T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQG-----GNDVTLIDQWPAHIEAIRKNGLIADFN 52 (316) T ss_dssp --CEEEEECCSHHHHHHHHHHHHT-----TCEEEEECSCHHHHHHHHHHCEEEEET T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHCCCEEECC T ss_conf 989899999289999999999968-----997899978899999999789689448 No 152 >1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 1n4a_A* 1n4d_A Probab=61.25 E-value=7.6 Score=17.51 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=38.1 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHH Q ss_conf 861001288868985117765799998663013463111100221100366355799999864015677422 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKE 152 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~ 152 (383) .+.+.+.+||+||.-++ ++.-...+++++. |+|++..- | .....+.+.+..+--+|--|.+ T Consensus 50 ~E~l~~l~PDlVi~~~~-~~~~~~~~~l~~~--gi~v~~~~-~-------~~~~~~~~~i~~lg~i~g~~~~ 110 (245) T 1n2z_A 50 LERIVALKPDLVIAWRG-GNAERQVDQLASL--GIKVMWVD-A-------TSIEQIANALRQLAPWSPQPDK 110 (245) T ss_dssp HHHHHHTCCSEEEECTT-TSCHHHHHHHHHH--TCCEEECC-C-------CSHHHHHHHHHHHGGGCSCHHH T ss_pred HHHHHHCCCCEEEEECC-CCCHHHHHHHHHC--CCEEEECC-C-------CCHHHHHHHHHHHHHHHHHHHH T ss_conf 99998449986997247-7738899999742--86477359-9-------9999999999999999740067 No 153 >1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Probab=61.07 E-value=5.5 Score=18.41 Aligned_cols=32 Identities=28% Similarity=0.569 Sum_probs=21.1 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCC Q ss_conf 0128886898-5117765-799998663013463 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLP 116 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ip 116 (383) .+++||++++ +.-||.| +.+++.+|+.....| T Consensus 45 ~~~~pdlvllD~~mP~~dG~el~~~ir~~~~~~~ 78 (130) T 1dz3_A 45 EEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQP 78 (130) T ss_dssp HHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCC T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCC T ss_conf 8559999998289999988999999985599999 No 154 >1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Probab=61.02 E-value=5.7 Score=18.35 Aligned_cols=35 Identities=20% Similarity=0.576 Sum_probs=18.9 Q ss_pred CCCCCCEEEEECH--HHHH-HHHHHHHHHHC--CCCCCEEE Q ss_conf 0128886898511--7765-79999866301--34631111 Q gi|254780767|r 85 VSSKPDVLLIVDN--PDFT-HRVAKRVRKKM--PNLPIINY 120 (383) Q Consensus 85 ~~~~Pd~vi~iD~--pgFn-l~lak~lkk~~--~~ipvi~y 120 (383) .+.+||+|++ |+ ||.| +.+++.+|+.. .++|+|.. T Consensus 42 ~~~~pdlvll-D~~mP~mdG~e~~~~ir~~~~~~~iPVI~l 81 (459) T 1w25_A 42 ARDLPDIILL-DVMMPGMDGFTVCRKLKDDPTTRHIPVVLI 81 (459) T ss_dssp HHHCCSEEEE-ESCCSSSCHHHHHHHHHHSTTTTTSCEEEE T ss_pred HCCCCCEEEE-ECCCCCCCHHHHHHHHHCCCCCCCCCEEEE T ss_conf 6279999999-798999999999999970867798968999 No 155 >2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum} Probab=61.02 E-value=7.6 Score=17.48 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=42.4 Q ss_pred CCEEEEEE-------CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHH Q ss_conf 74599997-------68214789999999999738998399997178999478806504445311013674664599999 Q gi|254780767|r 3 SLKIAVIA-------GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIF 75 (383) Q Consensus 3 ~mki~i~a-------GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~ 75 (383) +.||+++- |-..+.-+...+.+.|... ..++.+.|.+. .|.....+....++-|.. . + . T Consensus 5 ~vrIl~iGDSiT~G~g~~~~~~y~~~l~~~l~~~-~~~v~~~~~~~-----~g~~~~~~~~n~g~~G~~--~---~---~ 70 (215) T 2vpt_A 5 TIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQA-GLSIDFVGSQR-----SGPSSLPDKDHEGHSGWT--I---P---Q 70 (215) T ss_dssp EEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHT-TCEEEECCSEE-----CCCTTCSCCEEEECTTCC--H---H---H T ss_pred CEEEEEECHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCEEEEECCC-----CCCCCCCCCCCCCCCCCC--H---H---H T ss_conf 7189998605613848999996699999999855-99569983134-----677545565535527776--8---9---9 Q ss_pred HHHHHHHHCCCCCCCEEEEE Q ss_conf 99999861001288868985 Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIV 95 (383) Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~i 95 (383) ....+.+.+...+||+|++. T Consensus 71 ~~~~~~~~~~~~~pd~vvi~ 90 (215) T 2vpt_A 71 IASNINNWLNTHNPDVVFLW 90 (215) T ss_dssp HHHHHHHHHHHHCCSEEEEE T ss_pred HHHHHHHHHHHCCCCEEEEE T ss_conf 99999999865699889997 No 156 >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} Probab=60.82 E-value=3.4 Score=19.82 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=54.9 Q ss_pred CCCCEEEEEECCCCH-HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 987459999768214-7899999999997389983999971789994788065044453110136746645999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISG-DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 1 m~~mki~i~aGE~SG-D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) |+.+||-|+.....| +.| +.++++ .+++++.|+..+.-+.+ +..++ +..+ +.. T Consensus 3 ~~~lrvgiiG~G~~g~~~h----~~~~~~--~~~~~ivav~d~~~~~a--~~~~~--~~~~----------------~~~ 56 (362) T 3fhl_A 3 LEIIKTGLAAFGMSGQVFH----APFIST--NPHFELYKIVERSKELS--KERYP--QASI----------------VRS 56 (362) T ss_dssp CCCEEEEESCCSHHHHHTT----HHHHHH--CTTEEEEEEECSSCCGG--GTTCT--TSEE----------------ESC T ss_pred CCCEEEEEECCCHHHHHHH----HHHHHH--CCCCEEEEEECCCHHHH--HHHCC--CCCC----------------CCC T ss_conf 6675999993689999999----999983--98929999984999999--97678--9984----------------399 Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 986100128886898511776579999866301346311 Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) +.+.+....+|+|+..-.|.+++.+++.+=+. |++|+ T Consensus 57 ~~ell~~~~iDaV~I~tp~~~H~~~~~~al~a--GkhV~ 93 (362) T 3fhl_A 57 FKELTEDPEIDLIVVNTPDNTHYEYAGMALEA--GKNVV 93 (362) T ss_dssp SHHHHTCTTCCEEEECSCGGGHHHHHHHHHHT--TCEEE T ss_pred HHHHHCCCCCCEEEECCCCHHHHHHHHHHHHC--CCCCH T ss_conf 99996499998899948947889999999974--99751 No 157 >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; 15025322, structural genomics, JCSG, protein structure initiative, PSI; HET: NAI UNL; 2.05A {Clostridium acetobutylicum atcc 824} SCOP: c.2.1.2 Probab=60.82 E-value=7.7 Score=17.46 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=23.8 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 874599997682147899999999997389983999971 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) -+|||+|..| . =..|+.|++.|.++ +.++.++. T Consensus 11 ~~MKILItGa-t--GfIG~~lv~~L~~~---g~~V~~~~ 43 (292) T 1vl0_A 11 HHMKILITGA-N--GQLGREIQKQLKGK---NVEVIPTD 43 (292) T ss_dssp -CEEEEEEST-T--SHHHHHHHHHHTTS---SEEEEEEC T ss_pred CCCEEEEECC-C--CHHHHHHHHHHHHC---CCEEEEEE T ss_conf 9875899899-9--88999999999868---79899932 No 158 >3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Probab=60.73 E-value=5 Score=18.72 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=15.8 Q ss_pred CCCCCEEEE-ECHHHHH-HHHHHHHHHHC--CCCCCEE Q ss_conf 128886898-5117765-79999866301--3463111 Q gi|254780767|r 86 SSKPDVLLI-VDNPDFT-HRVAKRVRKKM--PNLPIIN 119 (383) Q Consensus 86 ~~~Pd~vi~-iD~pgFn-l~lak~lkk~~--~~ipvi~ 119 (383) +.+||++|+ +.-||.| +.+++.+|+.. .++|+|- T Consensus 45 ~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~iPiI~ 82 (133) T 3nhm_A 45 AHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIF 82 (133) T ss_dssp HSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEE T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEE T ss_conf 47999999759999999999999998288889987899 No 159 >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Probab=60.53 E-value=7.8 Score=17.43 Aligned_cols=78 Identities=28% Similarity=0.416 Sum_probs=44.2 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |++ ||+|+--+++ ....+.+.|+. . ++++....... +. T Consensus 1 M~k-rILiVDDd~~---~~~~l~~~L~~-~--g~~v~~a~~~~-----------------------------------~a 38 (120) T 3f6p_A 1 MDK-KILVVDDEKP---IADILEFNLRK-E--GYEVHCAHDGN-----------------------------------EA 38 (120) T ss_dssp CCC-EEEEECSCHH---HHHHHHHHHHH-T--TCEEEEESSHH-----------------------------------HH T ss_pred CCC-CEEEEECCHH---HHHHHHHHHHH-C--CCEEEEECCHH-----------------------------------HH T ss_conf 997-1999939999---99999999998-8--99999989999-----------------------------------99 Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 86100128886898-5117765-79999866301346311110 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383) .+.+.+++||++|+ +.-||.| +.+.+.+|+. .++|++... T Consensus 39 l~~l~~~~~dlii~D~~mP~~~G~e~~~~~r~~-~~~~ii~lt 80 (120) T 3f6p_A 39 VEMVEELQPDLILLDIMLPNKDGVEVCREVRKK-YDMPIIMLT 80 (120) T ss_dssp HHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTT-CCSCEEEEE T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCCEEEEE T ss_conf 999971899999982999999999999999816-899589997 No 160 >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Probab=59.72 E-value=7.4 Score=17.57 Aligned_cols=91 Identities=13% Similarity=0.251 Sum_probs=48.9 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+ +||-|+....-|..+ ...++++ .+ ++++.|+..+.-+.+ +.+ .+++++ + .+... T Consensus 1 Mk-lrvgiIG~G~~g~~~---~~~~l~~-~~-~~~l~av~d~~~~~~--~~~--~~~~~~-------~-------~~~~~ 56 (387) T 3moi_A 1 MK-IRFGICGLGFAGSVL---MAPAMRH-HP-DAQIVAACDPNEDVR--ERF--GKEYGI-------P-------VFATL 56 (387) T ss_dssp CC-EEEEEECCSHHHHTT---HHHHHHH-CT-TEEEEEEECSCHHHH--HHH--HHHHTC-------C-------EESSH T ss_pred CC-CEEEEECCCHHHHHH---HHHHHHH-CC-CEEEEEEECCCHHHH--HHH--HHHHCC-------C-------EECCH T ss_conf 96-169999896999999---9999973-97-919999987999999--999--998599-------8-------58999 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCC Q ss_conf 8610012888689851177657999986630134631 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPI 117 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipv 117 (383) .+.+.+.++|+|+..--|..+..+++++=+. |+.| T Consensus 57 ~ell~~~~vD~V~i~tp~~~H~~~~~~al~~--gkhV 91 (387) T 3moi_A 57 AEMMQHVQMDAVYIASPHQFHCEHVVQASEQ--GLHI 91 (387) T ss_dssp HHHHHHSCCSEEEECSCGGGHHHHHHHHHHT--TCEE T ss_pred HHHHCCCCCCEEEECCCCHHHHHHHHHHHHH--CCCE T ss_conf 9996599998899908967899999999861--8956 No 161 >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C Probab=59.69 E-value=7.4 Score=17.57 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=24.8 Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHC--CCCCCEEEE Q ss_conf 6100128886898-5117765-79999866301--346311110 Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKM--PNLPIINYV 121 (383) Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~--~~ipvi~yv 121 (383) +.+.+++||++|+ +--|+.| +.+++.+|+.. .++|+|-.- T Consensus 40 ~~~~~~~pdliilD~~mP~~~G~el~~~ir~~~~~~~iPiI~lT 83 (122) T 3gl9_A 40 EKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122) T ss_dssp HHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 99983799999851028999889999999838878999899982 No 162 >1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Probab=59.38 E-value=7.2 Score=17.65 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=47.4 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+ |||+++--|+ .....|...|.+. ++++....... +. T Consensus 1 M~-~rILiVeDd~---~~~~~l~~~L~~~---g~~V~~a~~~~-----------------------------------ea 38 (225) T 1kgs_A 1 MN-VRVLVVEDER---DLADLITEALKKE---MFTVDVCYDGE-----------------------------------EG 38 (225) T ss_dssp -C-CEEEEECSSH---HHHHHHHHHHHHT---TCEEEEESSHH-----------------------------------HH T ss_pred CC-CEEEEEECCH---HHHHHHHHHHHHC---CCEEEEECCHH-----------------------------------HH T ss_conf 99-6199992999---9999999999987---99999989999-----------------------------------99 Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEECC Q ss_conf 86100128886898-5117765-7999986630134631111002 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVCP 123 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~P 123 (383) .+.+.+++||++|+ +.-|+.+ +.+.+.+|+....+|++...+. T Consensus 39 ~~~~~~~~~dliilD~~lp~~~g~~~~~~ir~~~~~~pii~ls~~ 83 (225) T 1kgs_A 39 MYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTAL 83 (225) T ss_dssp HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESS T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCEEECCCC T ss_conf 999972899899994677654310101221113456753202334 No 163 >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A* Probab=59.16 E-value=5.7 Score=18.34 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=19.8 Q ss_pred HCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 100128886898-5117765-7999986630134631111 Q gi|254780767|r 83 LIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 83 ~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) .+...+||+|++ +--||-| +.+.+.+|+..+.+|+|.. T Consensus 39 ~l~~~~~DlVllDl~mP~~dGlell~~lr~~~p~~pVIvl 78 (387) T 1ny5_A 39 LLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387) T ss_dssp HHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE T ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEE T ss_conf 9861899889995999999999999999844999828995 No 164 >2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate binding protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2phz_A Probab=59.07 E-value=7.1 Score=17.70 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=25.1 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 8610012888689851177657999986630134631111 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) .+.|..-+||+||.- .+++-.+..++++. +++++.. T Consensus 89 ~E~I~al~PDlVi~~--~~~~~~~~~~l~~~--g~~v~~~ 124 (311) T 2wi8_A 89 IEKILEMKPDVILAS--TKFPEKTLQKISTA--GTTIPVS 124 (311) T ss_dssp HHHHHHHCCSEEEEE--TTSCHHHHHHHHTT--SCEEEEC T ss_pred HHHHHHCCCCEEECC--CCCCHHHHHHHHHH--CCCEEEC T ss_conf 999974199666546--75558899999850--9823313 No 165 >3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Probab=58.92 E-value=5.5 Score=18.43 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=10.2 Q ss_pred HHCCCCCHHHHHHHHHHHHC Q ss_conf 42054898999999999844 Q gi|254780767|r 326 YFNSMIRSEALVRWIERLSQ 345 (383) Q Consensus 326 liQ~~~~~~~i~~~~~~ll~ 345 (383) |+..-++++.+...+..++. T Consensus 107 yl~KP~~~~~Ll~~v~~~l~ 126 (142) T 3cg4_A 107 YITKPFDNEDLIEKTTFFMG 126 (142) T ss_dssp EEESSCCHHHHHHHHHHHHH T ss_pred EEECCCCHHHHHHHHHHHHH T ss_conf 99898999999999999999 No 166 >2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi} Probab=58.66 E-value=8.4 Score=17.22 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=34.1 Q ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH Q ss_conf 874599997-682147899999999997389983999971789994 Q gi|254780767|r 2 NSLKIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQK 46 (383) Q Consensus 2 ~~mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~ 46 (383) .+|||+++| |..|..+.+.++-++.+++ +.++++..++-.+.++ T Consensus 3 ~~mkIlL~C~~G~STsllv~km~~~a~~~-~~~~~I~A~~~~~~~~ 47 (109) T 2l2q_A 3 GSMNILLVCGAGMSTSMLVQRIEKYAKSK-NINATIEAIAETRLSE 47 (109) T ss_dssp CCEEEEEESSSSCSSCHHHHHHHHHHHHH-TCSEEEEEECSTTHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEEEHHHHHH T ss_conf 75289888789757999999999999986-9977999976899986 No 167 >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Probab=58.18 E-value=6.5 Score=17.94 Aligned_cols=36 Identities=28% Similarity=0.598 Sum_probs=21.5 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 0128886898-5117765-79999866301346311110 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383) .+++||++|+ +.-||.+ +.+.+..++. ..+|++... T Consensus 42 ~~~~~dliilD~~mp~~dG~~~l~~~~~~-~~~pvi~lt 79 (120) T 2a9o_A 42 EAEQPDIIILDLMLPEIDGLEVAKTIRKT-SSVPILMLS 79 (120) T ss_dssp HHHCCSEEEECSSCSSSCHHHHHHHHHHH-CCCCEEEEE T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEE T ss_conf 85799899982999998999999998865-998199997 No 168 >1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A Probab=57.71 E-value=6.7 Score=17.84 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=21.3 Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 86100128886898-5117765-7999986630134631111 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) .+.+.+++||++++ |-=||.| +.+.+.+|+. ..+|++-. T Consensus 51 l~~~~~~~pDlillDi~MP~mdGle~~~~ir~~-~~~piiil 91 (205) T 1s8n_A 51 VELAELHKPDLVIMDVKMPRRDGIDAASEIASK-RIAPIVVL 91 (205) T ss_dssp HHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHT-TCSCEEEE T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCCEEEE T ss_conf 999983799999996404586079999999856-99998999 No 169 >3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp} Probab=57.54 E-value=6.7 Score=17.84 Aligned_cols=32 Identities=31% Similarity=0.326 Sum_probs=12.5 Q ss_pred CCCCEEEEE-CHH-HHH-HHHHHHHHHHCCCCCCEE Q ss_conf 288868985-117-765-799998663013463111 Q gi|254780767|r 87 SKPDVLLIV-DNP-DFT-HRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 87 ~~Pd~vi~i-D~p-gFn-l~lak~lkk~~~~ipvi~ 119 (383) ++||++|+- .-| +++ +.+++.+|+ .+++|+|. T Consensus 53 ~~~dlvi~D~~mp~~~dG~~l~~~lr~-~~~~piI~ 87 (140) T 3cg0_A 53 LRPDIALVDIMLCGALDGVETAARLAA-GCNLPIIF 87 (140) T ss_dssp HCCSEEEEESSCCSSSCHHHHHHHHHH-HSCCCEEE T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHH-CCCCCEEE T ss_conf 799889997678767989999999985-79996899 No 170 >2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Probab=56.91 E-value=4.3 Score=19.10 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=41.8 Q ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH--------HHHCCCEEE-ECHHHCCEEEHHHHHHHHHHH Q ss_conf 4599997-682147899999999997389983999971789--------994788065-044453110136746645999 Q gi|254780767|r 4 LKIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPS--------LQKEGLVSL-FDFSELSVIGIMQVVRHLPQF 73 (383) Q Consensus 4 mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~--------m~~~G~~~~-~~~~~l~v~G~~evl~~~~~~ 73 (383) |||.|.+ |. |-. ...|++++++. ..++++.+|-.++ ....+.... .+... ... - T Consensus 2 mkiavl~SG~--Gsn-l~ali~~~~~~-~~~~~I~~Vitn~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~-~ 65 (216) T 2ywr_A 2 LKIGVLVSGR--GSN-LQAIIDAIESG-KVNASIELVISDNPKAYAIERCKKHNVECKVIQRKE-----------FPS-K 65 (216) T ss_dssp EEEEEEECSC--CHH-HHHHHHHHHTT-SSCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGG-----------SSS-H T ss_pred CEEEEEEECC--CHH-HHHHHHHHHCC-CCCCEEEEEEEECCCHHHHHHHHCCCCCEEEEECCC-----------CCC-H T ss_conf 6899999179--567-99999998739-999889999980885077766451486303542145-----------687-6 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHH Q ss_conf 9999999861001288868985117 Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVDNP 98 (383) Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD~p 98 (383) ...-.+..+.+.+.+||++|++-|+ T Consensus 66 ~~~~~~~~~~l~~~~~Dliv~~g~~ 90 (216) T 2ywr_A 66 KEFEERMALELKKKGVELVVLAGFM 90 (216) T ss_dssp HHHHHHHHHHHHHTTCCEEEESSCC T ss_pred HHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 6779999999987099999994712 No 171 >3etn_A Putative phosphosugar isomerase involved in capsule formation; YP_209877.1, structural genomics; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343} Probab=56.56 E-value=9.1 Score=16.99 Aligned_cols=134 Identities=14% Similarity=0.151 Sum_probs=57.9 Q ss_pred EECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHH-CCCCCCEEEECCCCCCCCC Q ss_conf 504445311013674664599999999998610012888689851177657999986630-1346311110022110036 Q gi|254780767|r 52 LFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKK-MPNLPIINYVCPSVWAWRE 130 (383) Q Consensus 52 ~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~-~~~ipvi~yv~PqvWAWr~ 130 (383) ..+.+.+.+.++.|.+++... +..+.+.+.. +.-+|+--+..-+++. ..+.+|+.| +- T Consensus 9 ~~~~e~~~~q~i~~~i~~~l~--~~~~a~~~~~-----------~~~~~e~~v~~i~~~i~~~~grI~~~--------Gv 67 (220) T 3etn_A 9 HHHHENLYFQGMIESIQELLQ--KEAQAVLNIP-----------VTDAYEKAVELIVEQIHRKKGKLVTS--------GM 67 (220) T ss_dssp ----------CHHHHHHHHHH--HHHHHHHTCC-----------CCTHHHHHHHHHHHHTTTTCCCEEEE--------CS T ss_pred CCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHCCCEEEEE--------EE T ss_conf 221011579999999999999--9999998543-----------13579999999999997179969999--------70 Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHC Q ss_conf 63557999998640156774223200255314763882112210013558889761876556505998538743012305 Q gi|254780767|r 131 GRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKIL 210 (383) Q Consensus 131 ~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~l 210 (383) |+--.++++.-.- |. +. |+++.|+.-+-.-... ...+.+++ .+.++-.|-.+ T Consensus 68 G~S~~vA~~~~~k---------l~-~l-G~~~~~~~d~~~~~~~----------~~~~~~~D-vlI~iS~SG~T------ 119 (220) T 3etn_A 68 GKAGQIAMNIATT---------FC-ST-GIPSVFLHPSEAQHGD----------LGILQEND-LLLLISNSGKT------ 119 (220) T ss_dssp HHHHHHHHHHHHH---------HH-HT-TCCEEECCTTGGGBTG----------GGGCCTTC-EEEEECSSSCC------ T ss_pred CHHHHHHHHHHHH---------HH-HC-CCCCEECCCHHHHHHH----------HHCCCCCC-EEEEECCCCCC------ T ss_conf 4799999999999---------99-83-9940527817788888----------51588888-89998289986------ Q ss_pred CCHHHHHHHHHHCCCCCEEEECCC Q ss_conf 111899987640273512620166 Q gi|254780767|r 211 PFFESAVASLVKRNPFFRFSLVTV 234 (383) Q Consensus 211 P~~l~~~~~l~~~~~~~~~~i~~~ 234 (383) +-.+++++...+...+...+..+. T Consensus 120 ~evi~~~~~ak~~~~~~~vI~IT~ 143 (220) T 3etn_A 120 REIVELTQLAHNLNPGLKFIVITG 143 (220) T ss_dssp HHHHHHHHHHHHHCTTCEEEEEES T ss_pred HHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 658888999874046871588860 No 172 >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.50A {Geobacter metallireducens gs-15} Probab=56.44 E-value=9.1 Score=16.98 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=32.2 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHCCCEEEE Q ss_conf 9874599997682147899999999997389983999971-7899947880650 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG-GPSLQKEGLVSLF 53 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG-G~~m~~~G~~~~~ 53 (383) |+ |||.|+.+.+=|=.+|+.|.++ +.++.++.=+ -+.+++.|+...- T Consensus 1 m~-MkI~ViGaGaiG~~~a~~L~~a-----G~~Vtlv~R~~~~ai~~~Gl~l~~ 48 (312) T 3hn2_A 1 MS-LRIAIVGAGALGLYYGALLQRS-----GEDVHFLLRRDYEAIAGNGLKVFS 48 (312) T ss_dssp ----CEEEECCSTTHHHHHHHHHHT-----SCCEEEECSTTHHHHHHTCEEEEE T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHCCEEEEE T ss_conf 98-8899999289999999999836-----995699968659999978949992 No 173 >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Probab=56.33 E-value=8.8 Score=17.07 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=20.3 Q ss_pred EEEEEE------CCCCHHHHHHHHHH----HHHHHCCCCEEEEEECCHHH Q ss_conf 599997------68214789999999----99973899839999717899 Q gi|254780767|r 5 KIAVIA------GEISGDLLAGDLIK----SLKEMVSYPINLVGVGGPSL 44 (383) Q Consensus 5 ki~i~a------GE~SGD~~~a~li~----~Lk~~~~~~~~~~giGG~~m 44 (383) ++.|+| |.+-|-.++..+.+ +++.+.| =+-+.-=||.+| T Consensus 106 ~vvVianD~T~~gGS~G~~~~~ki~~a~elA~~~glP-~I~l~~sgGARi 154 (758) T 3k8x_A 106 QFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIP-RIYLAANSGARI 154 (758) T ss_dssp EEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEECCCCBCC T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCC T ss_conf 8999988476206578889999999999999983999-899965888686 No 174 >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684} Probab=56.24 E-value=7.5 Score=17.53 Aligned_cols=35 Identities=14% Similarity=0.501 Sum_probs=20.2 Q ss_pred CCCCCEEEE-ECHHHHH-HHHHHHHHHH--CCCCCCEEE Q ss_conf 128886898-5117765-7999986630--134631111 Q gi|254780767|r 86 SSKPDVLLI-VDNPDFT-HRVAKRVRKK--MPNLPIINY 120 (383) Q Consensus 86 ~~~Pd~vi~-iD~pgFn-l~lak~lkk~--~~~ipvi~y 120 (383) +.+||++|+ +.-||.+ +.+.+.+|+. ..++|+|-. T Consensus 50 ~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~iPiI~l 88 (147) T 2zay_A 50 KTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIAL 88 (147) T ss_dssp HHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEE T ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEE T ss_conf 379999998599999975189999984855689718997 No 175 >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032} Probab=55.69 E-value=9.3 Score=16.90 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=53.8 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH Q ss_conf 74599997682147899999999997389983999971789994788065044453110136746645999999999986 Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383) Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383) +|||.|+....=|. ..++++++. +++++.|+..+.-+.+. .+ -+++ |+ +. +....+ T Consensus 4 ~irvgiIG~G~~g~----~h~~~~~~~--~~~~l~av~d~~~~~~~--~~--~~~~---~~----~~-------~~~~~e 59 (344) T 3euw_A 4 TLRIALFGAGRIGH----VHAANIAAN--PDLELVVIADPFIEGAQ--RL--AEAN---GA----EA-------VASPDE 59 (344) T ss_dssp CEEEEEECCSHHHH----HHHHHHHHC--TTEEEEEEECSSHHHHH--HH--HHTT---TC----EE-------ESSHHH T ss_pred CEEEEEECCHHHHH----HHHHHHHHC--CCCEEEEEECCCHHHHH--HH--HHHH---CC----CE-------ECCHHH T ss_conf 67798999729999----999999718--99489999889999999--99--9984---99----77-------899999 Q ss_pred HCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 100128886898511776579999866301346311 Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 83 ~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+.+..||+|+..-.|.++..+++.+=+. |++|+ T Consensus 60 ll~~~~iD~V~I~tp~~~h~~~~~~al~~--gk~Vl 93 (344) T 3euw_A 60 VFARDDIDGIVIGSPTSTHVDLITRAVER--GIPAL 93 (344) T ss_dssp HTTCSCCCEEEECSCGGGHHHHHHHHHHT--TCCEE T ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHHH--CCCEE T ss_conf 96489988899715431103567998851--37511 No 176 >1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Probab=55.63 E-value=4.2 Score=19.19 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=45.2 Q ss_pred EEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH Q ss_conf 599997-6821478999999999973899839999717899947880650444531101367466459999999999861 Q gi|254780767|r 5 KIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383) Q Consensus 5 ki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383) ||.|.+ |.=| . ...|+++.++. ..++++.+|-.++-...|.+. .....+.-.....+....-...-.++.+. T Consensus 2 ki~vl~SG~GS--n-l~aLl~~~~~~-~~~~eI~~Vitn~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 74 (209) T 1meo_A 2 RVAVLISGTGS--N-LQALIDSTREP-NSSAQIDIVISNKAAVAGLDK---AERAGIPTRVINHKLYKNRVEFDSAIDLV 74 (209) T ss_dssp EEEEEESSSCT--T-HHHHHHHHHST-TCSCEEEEEEESSTTCHHHHH---HHHTTCCEEECCGGGSSSHHHHHHHHHHH T ss_pred EEEEEEECCCH--H-HHHHHHHHHCC-CCCCEEEEEEECCCCHHHHHH---HHHCCCCEEEEECCCCCCHHHHHHHHHHH T ss_conf 89999837846--5-99999987669-999789999988976777778---88629624554045668988889999999 Q ss_pred CCCCCCCEEEEECHHHH-HHHHHHHH Q ss_conf 00128886898511776-57999986 Q gi|254780767|r 84 IVSSKPDVLLIVDNPDF-THRVAKRV 108 (383) Q Consensus 84 i~~~~Pd~vi~iD~pgF-nl~lak~l 108 (383) +.+.+||+++++-|+-. +-.+-... T Consensus 75 l~~~~~Dliv~~g~~~ii~~~il~~~ 100 (209) T 1meo_A 75 LEEFSIDIVCLAGFMRILSGPFVQKW 100 (209) T ss_dssp HHHTTCCEEEEESCCSCCCHHHHHHT T ss_pred HHHHCCCEEEEECCCHHCCHHHHHHH T ss_conf 98619999999560010778999876 No 177 >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Probab=55.51 E-value=4.1 Score=19.25 Aligned_cols=89 Identities=12% Similarity=0.182 Sum_probs=53.4 Q ss_pred CCCEEEEEEC-CCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 8745999976-821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 2 NSLKIAVIAG-EISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 2 ~~mki~i~aG-E~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) ++|||-|+.. -.+...| +.++++ .+++++.++..+.-++.. ++.. .++ .+... T Consensus 6 ~~irigiIG~G~~~~~~h----~~~~~~--~~~~~lvav~d~~~~~~~-------~~~~------~~~-------~~~~~ 59 (352) T 3kux_A 6 DKIKVGLLGYGYASKTFH----APLIMG--TPGLELAGVSSSDASKVH-------ADWP------AIP-------VVSDP 59 (352) T ss_dssp CCEEEEEECCSHHHHHTH----HHHHHT--STTEEEEEEECSCHHHHH-------TTCS------SCC-------EESCH T ss_pred CCCEEEEECCCHHHHHHH----HHHHHC--CCCEEEEEEECCCHHHHH-------HHCC------CCC-------EECCH T ss_conf 076399995879999999----999844--998399999898999999-------7469------997-------68989 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 86100128886898511776579999866301346311 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+.+.+..+|+|+..-.|.++..+++.+=+. |++++ T Consensus 60 ~~ll~~~~iD~V~i~tp~~~H~~~~~~al~~--gkhv~ 95 (352) T 3kux_A 60 QMLFNDPSIDLIVIPTPNDTHFPLAQSALAA--GKHVV 95 (352) T ss_dssp HHHHHCSSCCEEEECSCTTTHHHHHHHHHHT--TCEEE T ss_pred HHHHCCCCCCEEEECCCHHHHHHHHHHHHHC--CCCEE T ss_conf 9995699999899888688889889999985--99772 No 178 >3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} Probab=55.03 E-value=3.4 Score=19.78 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=10.5 Q ss_pred HCCCCCHHHHHHHHHHH Q ss_conf 20548989999999998 Q gi|254780767|r 327 FNSMIRSEALVRWIERL 343 (383) Q Consensus 327 iQ~~~~~~~i~~~~~~l 343 (383) +.++-|++.+.....++ T Consensus 248 I~~~dt~~~L~~~~~~~ 264 (292) T 3lou_A 248 VDHSYRPEQLLAVGRDV 264 (292) T ss_dssp CCTTCCHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHH T ss_conf 49999999999999999 No 179 >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Probab=54.92 E-value=9.6 Score=16.82 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=53.7 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 87459999768214789999999999738998399997178999478806504445311013674664599999999998 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTV 81 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~ 81 (383) ++|||.|+-...-|..| +++|++ .+++++.++.++..+.+ + .+.+ -.|+-+..+. +..+. T Consensus 5 ~~irvgiiG~G~~~~~~----~~~l~~--~~~~elvav~d~~~~~~--~---~~a~--~~~~~~~~~~-------~~d~~ 64 (362) T 1ydw_A 5 TQIRIGVMGCADIARKV----SRAIHL--APNATISGVASRSLEKA--K---AFAT--ANNYPESTKI-------HGSYE 64 (362) T ss_dssp -CEEEEEESCCTTHHHH----HHHHHH--CTTEEEEEEECSSHHHH--H---HHHH--HTTCCTTCEE-------ESSHH T ss_pred CCCEEEEECCCHHHHHH----HHHHHH--CCCCEEEEEECCCHHHH--H---HHHH--HHCCCCCCEE-------CCCHH T ss_conf 96189999682999999----999985--89988999987999999--9---9999--8499855565-------38999 Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 61001288868985117765799998663013463111 Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383) +.+....||+|+..--|+.+..+++.+=+. |++|+- T Consensus 65 ell~~~~iD~V~I~tp~~~H~~~~~~al~a--GkhVl~ 100 (362) T 1ydw_A 65 SLLEDPEIDALYVPLPTSLHVEWAIKAAEK--GKHILL 100 (362) T ss_dssp HHHHCTTCCEEEECCCGGGHHHHHHHHHTT--TCEEEE T ss_pred HHHCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEE T ss_conf 996499988899958826889999999976--985999 No 180 >3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Probab=54.31 E-value=6 Score=18.16 Aligned_cols=56 Identities=4% Similarity=-0.093 Sum_probs=26.8 Q ss_pred ECHHHHHHHHHHHHHHHCCCCC-CEEEECC--------CCCCCCCC-CHHHHHHHHHHHCCCCCCC Q ss_conf 5117765799998663013463-1111002--------21100366-3557999998640156774 Q gi|254780767|r 95 VDNPDFTHRVAKRVRKKMPNLP-IINYVCP--------SVWAWREG-RARKMCAYINQVISILPFE 150 (383) Q Consensus 95 iD~pgFnl~lak~lkk~~~~ip-vi~yv~P--------qvWAWr~~-R~k~~~~~~d~~~~ifpFE 150 (383) -|-||-=-.+...+-+++.+|- .=+|+-| ..|-+... -...+++.+..+.--|..+ T Consensus 16 pD~~GiVa~vt~~l~~~g~NI~~~~qf~D~~~~~FFmR~~f~~~~~~~~~~l~~~f~~~a~~~~m~ 81 (286) T 3n0v_A 16 PSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLAERSEAFGMA 81 (286) T ss_dssp ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHHHHHGGGTCE T ss_pred CCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCEE T ss_conf 999865999999999789987466112268888489999997699989999998899875211200 No 181 >3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} Probab=53.33 E-value=8.5 Score=17.18 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=24.8 Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC Q ss_conf 6100128886898-5117765-799998663013463111100 Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383) Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383) +.+...+||++++ ++-||.+ +.+.+.+++..+++|++-+.+ T Consensus 41 ~~~~~~~pdlvl~d~~l~~~~g~~~~~~l~~~~~~~~vi~~t~ 83 (225) T 3c3w_A 41 ARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTS 83 (225) T ss_dssp HHHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGG T ss_pred HHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEC T ss_conf 9998659989998277899861589887530289985786315 No 182 >2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} Probab=53.01 E-value=10 Score=16.62 Aligned_cols=49 Identities=14% Similarity=0.277 Sum_probs=28.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEE----ECH-----HHHHHHHHHHHHHHCCCCCCEE Q ss_conf 999999999986100128886898----511-----7765799998663013463111 Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLI----VDN-----PDFTHRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~----iD~-----pgFnl~lak~lkk~~~~ipvi~ 119 (383) ..+.+.++++++.+++++||.|+. .|. ...-..+.+.++....++|++. T Consensus 44 ~~~~~~l~~i~~~a~~~~~D~vliaGDlf~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 101 (336) T 2q8u_A 44 EELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVV 101 (336) T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHSCEEE T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE T ss_conf 9999999999999997499999989877779998889999999999998742897899 No 183 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Probab=52.84 E-value=6 Score=18.18 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=19.6 Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 6100128886898-5117765-7999986630134631111 Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) +.+.+.+||+||+ +.-||.| +.+.+.+|+..+++|+|-. T Consensus 38 ~~l~~~~~DlvllDl~mP~~dGlell~~ir~~~p~~pVIvl 78 (368) T 3dzd_A 38 KKIKELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI 78 (368) T ss_dssp HHHHHBCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCC T ss_conf 99871799999997989999999999999963998754455 No 184 >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Probab=52.63 E-value=8.3 Score=17.26 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=53.8 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+..||+|+--+++ ...+++.+-+.. ++++......+ |. T Consensus 1 ms~~~vLiVDD~~~----~~~~l~~~L~~~--G~~v~~a~~g~---------------------eA-------------- 39 (127) T 3i42_A 1 MSLQQALIVEDYQA----AAETFKELLEML--GFQADYVMSGT---------------------DA-------------- 39 (127) T ss_dssp -CCEEEEEECSCHH----HHHHHHHHHHHT--TEEEEEESSHH---------------------HH-------------- T ss_pred CCCCEEEEEECCHH----HHHHHHHHHHHC--CCEEEEECCHH---------------------HH-------------- T ss_conf 99888999957899----999999999987--99999989999---------------------99-------------- Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHH--CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 86100128886898-5117765-7999986630--1346311110022110036635579999986401567742232 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKK--MPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVM 154 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~--~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f 154 (383) .+.+.+++||++++ +.-||.| +.+++.+|+. ...+|++-.-+ ++....+... ..-+|..+ .=||..+-. T Consensus 40 l~~l~~~~~dlillD~~mP~~~G~el~~~lr~~~~~~~~pii~lt~---~~~~~~~~~~-~~g~~~~L-~KP~~~~~L 112 (127) T 3i42_A 40 LHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSG---FAKNDLGKEA-CELFDFYL-EKPIDIASL 112 (127) T ss_dssp HHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEEC---C-CTTCCHHH-HHHCSEEE-ESSCCHHHH T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEC---CCCHHHHHHH-HHCCCEEE-ECCCCHHHH T ss_conf 9999808999998627899984599999998476789994999978---8879999999-71787899-798999999 No 185 >1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A Probab=52.26 E-value=6.5 Score=17.94 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=19.2 Q ss_pred CEEEEECHHHHH---HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 868985117765---79999866301346311110022110036635579999986401 Q gi|254780767|r 90 DVLLIVDNPDFT---HRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVIS 145 (383) Q Consensus 90 d~vi~iD~pgFn---l~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ 145 (383) |++|.|.++|-+ +..++.+|++ |++++-.- ..+-..+.+++|+.+. T Consensus 81 Dl~I~iS~sG~t~~~~~~~~~ak~~--g~~ii~IT--------~~~~s~la~~ad~~l~ 129 (186) T 1m3s_A 81 DLVIIGSGSGETKSLIHTAAKAKSL--HGIVAALT--------INPESSIGKQADLIIR 129 (186) T ss_dssp CEEEEECSSSCCHHHHHHHHHHHHT--TCEEEEEE--------SCTTSHHHHHCSEEEE T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC--CCEEEEEE--------CCCCCHHHHHCCEEEE T ss_conf 9999983897514699999999987--99599997--------9999967996899999 No 186 >2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A* Probab=51.95 E-value=11 Score=16.51 Aligned_cols=91 Identities=12% Similarity=0.266 Sum_probs=52.5 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 87459999768214789999999999738998399997178999478806504445311013674664599999999998 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTV 81 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~ 81 (383) ++|||.|+-+ |-+ |..+++.|.+ ..++...++..++.++.--. .+...+ ++ .. ...+. T Consensus 15 ~~mki~vlG~---G~v-G~~~~~~L~~--~~~v~~~~~~~~~~~~~~~~-------~~~~~~-d~-~~-------~~~l~ 72 (365) T 2z2v_A 15 RHMKVLILGA---GNI-GRAIAWDLKD--EFDVYIGDVNNENLEKVKEF-------ATPLKV-DA-SN-------FDKLV 72 (365) T ss_dssp -CCEEEEECC---SHH-HHHHHHHHTT--TSEEEEEESCHHHHHHHTTT-------SEEEEC-CT-TC-------HHHHH T ss_pred CCCEEEEECC---CHH-HHHHHHHHHC--CCCEEEEECCHHHHHHHHHH-------CCCEEE-EC-CC-------HHHHH T ss_conf 7257999997---599-9999999864--79869998778889987742-------773687-34-99-------99999 Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 6100128886898511776579999866301346311 Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) +.+ .+.|+||-.=-|.+|..+++.+-+. |++++ T Consensus 73 ~~~--~~~d~Vi~~~~~~~~~~v~~~~~~~--g~~yi 105 (365) T 2z2v_A 73 EVM--KEFELVIGALPGFLGFKSIKAAIKS--KVDMV 105 (365) T ss_dssp HHH--TTCSCEEECCCHHHHHHHHHHHHHT--TCCEE T ss_pred HHH--HCCCEEEECCCCCCHHHHHHHHHHC--CCCCC T ss_conf 997--3589999967851025899998752--85221 No 187 >3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural genomics center for infectious disease; 2.20A {Anaplasma phagocytophilum HZ} Probab=51.62 E-value=2.5 Score=20.71 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=40.2 Q ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 9874599997-682147899999999997389983999971789994788065044453110136746645999999999 Q gi|254780767|r 1 MNSLKIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 1 m~~mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) .++|||.|.+ |. |-. ...|+.+++.. ..++++.++-.++-.+.|... .....+--+ ...+.. ..-.+ T Consensus 6 ~k~mkIavl~SG~--Gsn-l~aii~~~~~~-~~~~eI~~VIsn~~~~~~l~~---~~~~~i~~~--~~~~~~---~~~~~ 73 (215) T 3kcq_A 6 KKELRVGVLISGR--GSN-LEALAKAFSTE-ESSVVISCVISNNAEARGLLI---AQSYGIPTF--VVKRKP---LDIEH 73 (215) T ss_dssp -CCEEEEEEESSC--CHH-HHHHHHHTCCC--CSEEEEEEEESCTTCTHHHH---HHHTTCCEE--ECCBTT---BCHHH T ss_pred CCCCEEEEEEECC--CHH-HHHHHHHHHCC-CCCEEEEEEEECCCCCHHHHH---HHHCCCCEE--ECCCCC---CCHHH T ss_conf 9987899999398--773-99999997769-988399999957964177767---775499887--426676---06899 Q ss_pred HHHHCCCCCCCEEEEECHH Q ss_conf 9861001288868985117 Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNP 98 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~iD~p 98 (383) ..+.+++.+||+++++-|. T Consensus 74 ~~~~l~~~~~Dliv~~g~~ 92 (215) T 3kcq_A 74 ISTVLREHDVDLVCLAGFM 92 (215) T ss_dssp HHHHHHHTTCSEEEESSCC T ss_pred HHHHHHHCCCCEEEEECCC T ss_conf 9999986599999990434 No 188 >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase, RV2981C, structural genomics, TB structural genomics consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Probab=51.53 E-value=9.4 Score=16.90 Aligned_cols=39 Identities=23% Similarity=0.485 Sum_probs=27.8 Q ss_pred CCCCEEEEEECCCCHH-----HHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9874599997682147-----899999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGD-----LLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD-----~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |++|||.|+.|..|.. .-|..++++|.+. ..++...++. T Consensus 8 ~~K~kI~vl~GG~S~E~eVSl~S~~~v~~~L~~~-~y~v~~i~i~ 51 (373) T 3lwb_A 8 DRRVRVAVVFGGRSNEHAISCVSAGSILRNLDSR-RFDVIAVGIT 51 (373) T ss_dssp TTCEEEEEEEEC-----CHHHHHHHHHHHHSCTT-TEEEEEEEEC T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-CCEEEEEEEC T ss_conf 8987799996867740699999999999975550-8869999984 No 189 >1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3 Probab=51.53 E-value=8.1 Score=17.32 Aligned_cols=21 Identities=5% Similarity=-0.108 Sum_probs=9.6 Q ss_pred CCHHHHHHHHHHCCCCCEEEECC Q ss_conf 11189998764027351262016 Q gi|254780767|r 211 PFFESAVASLVKRNPFFRFSLVT 233 (383) Q Consensus 211 P~~l~~~~~l~~~~~~~~~~i~~ 233 (383) +-.+++++...++. ...+..+ T Consensus 96 ~~~i~~~~~ak~~g--~~vI~IT 116 (180) T 1jeo_A 96 ESVLTVAKKAKNIN--NNIIAIV 116 (180) T ss_dssp HHHHHHHHHHHTTC--SCEEEEE T ss_pred HHHHHHHHHHHHCC--CCEEEEE T ss_conf 89999999999759--9799996 No 190 >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Probab=51.51 E-value=9.1 Score=16.98 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=12.0 Q ss_pred CCCCEEEE-ECHHHHH-HHHHHHHHH Q ss_conf 28886898-5117765-799998663 Q gi|254780767|r 87 SKPDVLLI-VDNPDFT-HRVAKRVRK 110 (383) Q Consensus 87 ~~Pd~vi~-iD~pgFn-l~lak~lkk 110 (383) .+||++|+ ++-||.| +.+++.+|. T Consensus 57 ~~~dlii~D~~mp~~~G~el~~~ir~ 82 (143) T 3m6m_D 57 EDYDAVIVDLHMPGMNGLDMLKQLRV 82 (143) T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHH T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH T ss_conf 89999998388899988999999986 No 191 >1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1 Probab=51.19 E-value=11 Score=16.44 Aligned_cols=39 Identities=26% Similarity=0.168 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHH Q ss_conf 59999999999861001288868985117765799998663 Q gi|254780767|r 70 LPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRK 110 (383) Q Consensus 70 ~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk 110 (383) ...+.+..+++.+.+.+.+||++|+|..-|+-+ |..+.+ T Consensus 8 ~~~i~~~i~~La~~i~~~~~d~IvgI~rgG~~~--a~~la~ 46 (153) T 1vdm_A 8 WWQVDRAIFALAEKLREYKPDVIIGVARGGLIP--AVRLSH 46 (153) T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEETTTTHHH--HHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH--HHHHHH T ss_conf 999999999999998755999999988886899--999999 No 192 >1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ... Probab=51.04 E-value=9.2 Score=16.94 Aligned_cols=37 Identities=16% Similarity=0.348 Sum_probs=21.6 Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHH--CCCCCCEEE Q ss_conf 00128886898-5117765-7999986630--134631111 Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKK--MPNLPIINY 120 (383) Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~--~~~ipvi~y 120 (383) +.+.+||++++ +.-||.+ +.+++.+|+. ..++|+|-. T Consensus 45 ~~~~~~dliilD~~mP~~dG~el~~~ir~~~~~~~~piI~l 85 (128) T 1jbe_A 45 LQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMV 85 (128) T ss_dssp HTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEE T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEE T ss_conf 76289999999699999998999999997567799938999 No 193 >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Probab=50.67 E-value=8.1 Score=17.30 Aligned_cols=89 Identities=9% Similarity=0.096 Sum_probs=49.7 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 59999768214789999999999738998399997178999478806504445311013674664599999999998610 Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELI 84 (383) Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i 84 (383) |.-|+....-|..| +.++++. + ++++.|+.++....+ +... ++++ + -+.+....+.+ T Consensus 2 ~~GIIG~G~~~~~~----~~~~~~~-~-~~~l~av~d~~~~~~--~~~~--~~~~---~----------~~~~~~~~e~l 58 (332) T 2glx_A 2 RWGLIGASTIAREW----VIGAIRA-T-GGEVVSMMSTSAERG--AAYA--TENG---I----------GKSVTSVEELV 58 (332) T ss_dssp EEEEESCCHHHHHT----HHHHHHH-T-TCEEEEEECSCHHHH--HHHH--HHTT---C----------SCCBSCHHHHH T ss_pred CEEEECCHHHHHHH----HHHHHHC-C-CCEEEEEECCCHHHH--HHHH--HHHC---C----------CCEECCHHHHH T ss_conf 09999966999999----9999738-9-978999984999999--9999--9809---9----------94018999995 Q ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 0128886898511776579999866301346311 Q gi|254780767|r 85 VSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 85 ~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) ...++|+|+..--|.++..+++++=+. |++++ T Consensus 59 ~~~~iD~v~i~tp~~~H~~~~~~al~~--gk~v~ 90 (332) T 2glx_A 59 GDPDVDAVYVSTTNELHREQTLAAIRA--GKHVL 90 (332) T ss_dssp TCTTCCEEEECSCGGGHHHHHHHHHHT--TCEEE T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHC--CCCEE T ss_conf 699999999968844657889999986--99875 No 194 >2r79_A Periplasmic binding protein; heme transport, transport protein; HET: HEM; 2.40A {Pseudomonas aeruginosa} Probab=50.67 E-value=8.7 Score=17.09 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=27.1 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECC-CCCCC Q ss_conf 8610012888689851177657999986630134631111002-21100 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCP-SVWAW 128 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~P-qvWAW 128 (383) .+.|.+-+||+|+..++.+ +-.....+++. ++|++.+-.+ +.|-| T Consensus 52 ~E~i~~l~PDlIi~~~~~~-~~~~~~~~~~~--~i~~~~~~~~~~~~~~ 97 (283) T 2r79_A 52 AEGVLALRPDILIGTEEMG-PPPVLKQLEGA--GVRVETLSAKPDLEAL 97 (283) T ss_dssp HHHHHTTCCSEEEECTTCC-CHHHHHHHHHT--TCCEEECCCCSSHHHH T ss_pred HHHHHHCCCCEEEEECCCC-CHHHHHHHHHC--CCCEEEECCCCCHHHH T ss_conf 9999724999699504545-30567777623--8714772478987888 No 195 >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Probab=50.64 E-value=11 Score=16.38 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=26.6 Q ss_pred CCCCEEEEEECCCCHHHHH-----HHHHHHHHHHCCCCEEEEEEC Q ss_conf 9874599997682147899-----999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLA-----GDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~-----a~li~~Lk~~~~~~~~~~giG 40 (383) |++.||.|+.|..|..--- ..+.++|++. +.++...++. T Consensus 35 m~k~~I~vl~GG~S~E~eiSl~Sg~~v~~aL~~~-~y~v~~i~i~ 78 (383) T 3k3p_A 35 MSKETLVLLYGGRSAERDVSVLSAESVMRAINYD-NFLVKTYFIT 78 (383) T ss_dssp --CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTT-TEEEEEEEEC T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH-CCEEEEEEEC T ss_conf 5798799996936764299999999999975363-8979999985 No 196 >3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi strain cl brener} PDB: 3k7s_A* 3k7o_A* 3k8c_A* Probab=50.51 E-value=11 Score=16.37 Aligned_cols=10 Identities=30% Similarity=0.405 Sum_probs=5.0 Q ss_pred HHHHHCCCEE Q ss_conf 8876275302 Q gi|254780767|r 281 ELALCGIPVV 290 (383) Q Consensus 281 E~al~g~P~I 290 (383) -.|+.++|-| T Consensus 96 sIaANK~~GI 105 (179) T 3k7p_A 96 SIAANKVPGV 105 (179) T ss_dssp HHHHHTSTTC T ss_pred HHHHHCCCCC T ss_conf 8887648996 No 197 >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Probab=50.00 E-value=11 Score=16.32 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=24.1 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 599997682147899999999997389983999971 Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |+.+++|-.|| .|..+.+.|-+....+.++...+ T Consensus 7 KvalITGas~G--IG~aiA~~lA~~~~~Ga~Vv~~~ 40 (259) T 1oaa_A 7 AVCVLTGASRG--FGRALAPQLARLLSPGSVMLVSA 40 (259) T ss_dssp EEEEESSCSSH--HHHHHHHHHHTTBCTTCEEEEEE T ss_pred CEEEECCCCCH--HHHHHHHHHHHCCCCCCEEEEEE T ss_conf 88999077878--99999999986134899899998 No 198 >3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} Probab=49.76 E-value=5.3 Score=18.55 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=44.8 Q ss_pred CCEEEEECCCCH------HHHHHHHHH---HCCCHHHHHHHHHHCCCEEEEC--CCC-CCEEE-EEE----CCCCCCEEE Q ss_conf 850552055203------578876355---2331156688876275302540--577-41000-010----246761023 Q gi|254780767|r 251 SPEIIIDKEQKK------QVFMTCNAA---MAASGTVILELALCGIPVVSIY--KSE-WIVNF-FIF----YIKTWTCAL 313 (383) Q Consensus 251 ~~~i~~~~~~~~------~~l~~sd~a---i~~SGTaTLE~al~g~P~IV~Y--k~~-~lt~~-i~~----lik~~~i~L 313 (383) ..+|.+.+++.. +.+....+- .+.+|...++.+....|-+|+- .+. -.+.+ +.+ .-.++.|.| T Consensus 160 ~~~ILiVdD~~~~~~~l~~~L~~~g~~v~~~a~~~~~a~~~~~~~~~Dlil~Di~mp~~mdG~~~~~~ir~~~~~piI~l 239 (286) T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFI 239 (286) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEEEE T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEE T ss_conf 63299988879999999999997699748861328999999751799889981788789889999999986699838999 Q ss_pred EHHHCCC------CCCCHHHCCCCCHHHHHHHHHHHHC Q ss_conf 0244078------4261242054898999999999844 Q gi|254780767|r 314 PNLIVDY------PLVPEYFNSMIRSEALVRWIERLSQ 345 (383) Q Consensus 314 pNii~~~------~ivPEliQ~~~~~~~i~~~~~~ll~ 345 (383) --- .+. .=.-.|+.+-++++.|...+.+.|. T Consensus 240 Ta~-~~~~~~~~~~g~~~yl~KP~~~~~L~~~i~~aL~ 276 (286) T 3n0r_A 240 TAF-PERLLTGERPEPTFLITKPFQPETVKAAIGQALF 276 (286) T ss_dssp ESC-GGGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHH T ss_pred ECC-HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 568-8899999986999899898999999999999998 No 199 >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Probab=49.73 E-value=12 Score=16.29 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=25.4 Q ss_pred HCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHC--CCCCCEEEEC Q ss_conf 100128886898-5117765-79999866301--3463111100 Q gi|254780767|r 83 LIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKM--PNLPIINYVC 122 (383) Q Consensus 83 ~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~--~~ipvi~yv~ 122 (383) .+.+.+||+|++ ++-||.+ +.+++.+|+.. .++|++-+-+ T Consensus 40 ~l~~~~pdlvllD~~lp~~~G~~l~~~lr~~~~~~~~pii~~t~ 83 (119) T 2j48_A 40 QLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLG 83 (119) T ss_dssp HHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEES T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEC T ss_conf 99817999899963799999999999998288889864999977 No 200 >2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductase; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C* Probab=49.73 E-value=12 Score=16.29 Aligned_cols=130 Identities=14% Similarity=0.250 Sum_probs=83.8 Q ss_pred CCCEEEEEEC-----CCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC-CHHHHHHHHHHHCCCCCEEEEECCCCHHH Q ss_conf 5650599853-----87430123051118999876402735126201663-36889999996048885055205520357 Q gi|254780767|r 191 QWKKILLLPG-----SRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS-SQENLVRCIVSKWDISPEIIIDKEQKKQV 264 (383) Q Consensus 191 ~~~~I~llPG-----SR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 264 (383) +.+.|.+-|| |+.| -..-+.++.|.++..+.+|-|..+. -......-.+.+.+.+.+++..-++...- T Consensus 45 ~A~~VIIVPGYGMAVAQAQ------h~V~EL~~~L~~~G~~V~faIHPVAGRmPGhmNVLLAEa~VpYd~~~emdeiN~~ 118 (203) T 2fsv_C 45 NASKVIIVPGYGMAVAQAQ------HALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSS 118 (203) T ss_dssp HCSEEEEEECHHHHHHTCH------HHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGGG T ss_pred CCCEEEEECCHHHHHHHHH------HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCHHHHHCHHHHCCC T ss_conf 6985999758279999999------9999999999968982489863243448872068998616987886376650653 Q ss_pred HHHHHHHHCCCHHHHH--------HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHH Q ss_conf 8876355233115668--------88762753025405774100001024676102302440784261242 Q gi|254780767|r 265 FMTCNAAMAASGTVIL--------ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYF 327 (383) Q Consensus 265 l~~sd~ai~~SGTaTL--------E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEli 327 (383) +..+|++|+.---=+. ..-+.|-|.+=+.|..-. -.++|=+..-|.+..|=+.-++-.-=|+ T Consensus 119 f~~~Dv~lViGANDvvNPaA~~d~~spi~GMPvl~v~kak~v-iv~krs~~~Gyagv~NpLf~~~nt~mlf 188 (203) T 2fsv_C 119 FQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTV-LFIKRSMASGYAGVENELFFRNNTMMLF 188 (203) T ss_dssp STTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEE-EEEESSSCCCTTCCCCGGGGSTTEEEEE T ss_pred CCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCEEEEEECCEE-EEEECCCCCCCCCCCCCCEECCCCEEEE T ss_conf 001768999436554482320699996268825432507789-9997887887567877555358836993 No 201 >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419} Probab=49.65 E-value=12 Score=16.28 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=22.9 Q ss_pred CCCCEEEEE-CHHH-HH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 288868985-1177-65-79999866301346311110 Q gi|254780767|r 87 SKPDVLLIV-DNPD-FT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 87 ~~Pd~vi~i-D~pg-Fn-l~lak~lkk~~~~ipvi~yv 121 (383) .++|++|+- +-|| -| +.+++.+|+..+++|++..- T Consensus 49 ~~~dlvi~D~~~p~~~~G~el~~~ir~~~~~~pii~~s 86 (132) T 2rdm_A 49 AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYIS 86 (132) T ss_dssp CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEE T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 99879987300589999999999999749899689997 No 202 >2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} Probab=49.61 E-value=12 Score=16.28 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=18.5 Q ss_pred HHHCCCHHHHHHHHHHCCCCCEEEECCCC Q ss_conf 23051118999876402735126201663 Q gi|254780767|r 207 YKILPFFESAVASLVKRNPFFRFSLVTVS 235 (383) Q Consensus 207 ~~~lP~~l~~~~~l~~~~~~~~~~i~~~~ 235 (383) ..++|.|.++++.+.+..++..+++-.++ T Consensus 185 ~~~l~~~~~~i~~l~~~~~~~~iivGGa~ 213 (258) T 2i2x_B 185 TTTMYAFKEVNDMLLENGIKIPFACGGGA 213 (258) T ss_dssp TTTTTHHHHHHHHHHTTTCCCCEEEESTT T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCC T ss_conf 67679999999999974999948988987 No 203 >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Probab=49.53 E-value=9.5 Score=16.87 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=19.3 Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHH--CCCCCCEEE Q ss_conf 0128886898-5117765-7999986630--134631111 Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKK--MPNLPIINY 120 (383) Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~--~~~ipvi~y 120 (383) .+++||++|+ +.-|+.| +.+.+.+|+. ..++|++-. T Consensus 48 ~~~~~dlii~D~~mP~~dG~~l~~~ir~~~~~~~~pii~l 87 (129) T 1p6q_A 48 AQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIIL 87 (129) T ss_dssp HTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEEC T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEE T ss_conf 7189989998458899987999999983856689829999 No 204 >1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3iie_A Probab=49.42 E-value=12 Score=16.26 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=19.1 Q ss_pred CCCCCCCHHHCCCCCHHHHHHHHHHHHC Q ss_conf 0784261242054898999999999844 Q gi|254780767|r 318 VDYPLVPEYFNSMIRSEALVRWIERLSQ 345 (383) Q Consensus 318 ~~~~ivPEliQ~~~~~~~i~~~~~~ll~ 345 (383) +|+..|--|++++..-..|.+-+.+.++ T Consensus 346 ANEiAV~~FL~~KI~F~dI~~iI~~~l~ 373 (406) T 1q0q_A 346 ANEITVAAFLAQQIRFTDIAALNLSVLE 373 (406) T ss_dssp HHHHHHHHHHTTSSCTTHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 8899999998589984789999999998 No 205 >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* Probab=49.32 E-value=12 Score=16.25 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=16.8 Q ss_pred CCCCCCCHHHCCCCCHHHHHHHHHHHHCC Q ss_conf 07842612420548989999999998449 Q gi|254780767|r 318 VDYPLVPEYFNSMIRSEALVRWIERLSQD 346 (383) Q Consensus 318 ~~~~ivPEliQ~~~~~~~i~~~~~~ll~d 346 (383) +|+..|--|++++..--.|.+-+.+.+++ T Consensus 312 ANEvAV~~FL~~kI~F~dI~~iI~~~L~~ 340 (376) T 3a06_A 312 ADEVAVEAFLKGRIRFGGIHRVIEKTLEE 340 (376) T ss_dssp HHHHHHHHHHTTSSCTTHHHHHHHHHHHT T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 98999999995899867899999999985 No 206 >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} Probab=48.89 E-value=11 Score=16.45 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=14.2 Q ss_pred CCCCCCCEEEE-ECHHHH---HHHHHHHHHHHCCCCCCEE Q ss_conf 00128886898-511776---5799998663013463111 Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDF---THRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 84 i~~~~Pd~vi~-iD~pgF---nl~lak~lkk~~~~ipvi~ 119 (383) +.+.+||++|+ +|.|+. -+....++++..+.+|++- T Consensus 46 l~~~~~d~vilD~~l~~~~~~gl~~~~~~~~~~~~~pvi~ 85 (136) T 3kto_A 46 QISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIV 85 (136) T ss_dssp CCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEE T ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEE T ss_conf 9847998899993686478840899999975026886799 No 207 >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Probab=48.61 E-value=12 Score=16.18 Aligned_cols=23 Identities=17% Similarity=0.530 Sum_probs=14.0 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 5999976821478999999999973 Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEM 29 (383) Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~ 29 (383) |+.+++|-.|| .|..+.+.|-+. T Consensus 33 KvalITGas~G--IG~aiA~~la~~ 55 (279) T 1xg5_A 33 RLALVTGASGG--IGAAVARALVQQ 55 (279) T ss_dssp CEEEEESTTSH--HHHHHHHHHHHT T ss_pred CEEEEECCCCH--HHHHHHHHHHHC T ss_conf 88999277878--999999999987 No 208 >1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Probab=48.05 E-value=11 Score=16.42 Aligned_cols=79 Identities=13% Similarity=0.271 Sum_probs=45.1 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |++-||+|+--++ ..+..|...|++. ++++....... +. T Consensus 5 ~~~pkILiVeDd~---~~~~~l~~~L~~~---g~~V~~a~~~~-----------------------------------ea 43 (233) T 1ys7_A 5 VTSPRVLVVDDDS---DVLASLERGLRLS---GFEVATAVDGA-----------------------------------EA 43 (233) T ss_dssp --CCEEEEECSCH---HHHHHHHHHHHHT---TCEEEEESSHH-----------------------------------HH T ss_pred CCCCEEEEEECCH---HHHHHHHHHHHHC---CCEEEEECCHH-----------------------------------HH T ss_conf 9998799997999---9999999999978---99999989999-----------------------------------99 Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 86100128886898-5117765-7999986630134631111 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) .+.+..++||++|+ +..||-+ +.+..++++....+|++-. T Consensus 44 ~~~~~~~~~dlvilD~~lp~~~g~~~~~~~r~~~~~~~iiil 85 (233) T 1ys7_A 44 LRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVL 85 (233) T ss_dssp HHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCEECC T ss_conf 999974799789752238755686223101235777623314 No 209 >1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferase, sugar transport, phosphorylation; NMR {Escherichia coli K12} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D Probab=47.91 E-value=12 Score=16.11 Aligned_cols=89 Identities=16% Similarity=0.321 Sum_probs=51.6 Q ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 9874599997-682147899999999997389983999971789994788065044453110136746645999999999 Q gi|254780767|r 1 MNSLKIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 1 m~~mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) |.+.||+++| |..|..+.+..+-++.+++ +-++++..++-.+.... T Consensus 1 m~~k~IlL~C~~G~STs~l~~km~~~a~~~-~~~~~i~A~~~~~~~~~-------------------------------- 47 (106) T 1e2b_A 1 MEKKHIYLFSSAGMSTSLLVSKMRAQAEKY-EVPVIIEAFPETLAGEK-------------------------------- 47 (106) T ss_dssp CCCEEEEEECSSSTTTHHHHHHHHHHHHHS-CCSEEEEEECSSSTTHH-------------------------------- T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEEEEHHHHHHH-------------------------------- T ss_conf 998889998489611999999999999987-99889999407888752-------------------------------- Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC Q ss_conf 98610012888689851177657999986630134631111002211003663 Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGR 132 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R 132 (383) + .+.|++++ .|-.-+...+ +++...++|+ ..|.|+..+|-.+. T Consensus 48 ----~--~~~DviLL--~PQv~~~~~~-i~~~~~~~pV-~vI~~~~Yg~mdg~ 90 (106) T 1e2b_A 48 ----G--QNADVVLL--GPQIAYMLPE-IQRLLPNKPV-EVIDSLLYGKVDGL 90 (106) T ss_dssp ----H--HHCSEEEE--CTTSGGGHHH-HHHHSSSSCC-CBCCHHHHTTTCTT T ss_pred ----C--CCCCEEEE--CHHHHHHHHH-HHHHCCCCCE-EEECHHHHHCCCHH T ss_conf ----4--79979998--6889988999-9988089998-98786761156899 No 210 >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Probab=47.72 E-value=12 Score=16.09 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=28.1 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH Q ss_conf 599997682147899999999997389983999971789994 Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQK 46 (383) Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~ 46 (383) |+.+++|-.|| .|..+.+.|-++ +.++-+.+...+.+++ T Consensus 9 KvalITGas~G--IG~a~a~~la~~-Ga~Vv~~~r~~~~l~~ 47 (319) T 3ioy_A 9 RTAFVTGGANG--VGIGLVRQLLNQ-GCKVAIADIRQDSIDK 47 (319) T ss_dssp CEEEEETTTST--HHHHHHHHHHHT-TCEEEEEESCHHHHHH T ss_pred CEEEEECCCCH--HHHHHHHHHHHC-CCEEEEEECCHHHHHH T ss_conf 88999288878--999999999987-9989999898899999 No 211 >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} Probab=47.49 E-value=13 Score=16.07 Aligned_cols=87 Identities=14% Similarity=0.238 Sum_probs=44.7 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE-CCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH Q ss_conf 459999768214789999999999738998399997-1789994788065044453110136746645999999999986 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV-GGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi-GG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383) |||+++-.. |=-|| |..+|++. +.--+++-. |-+.|+..+ +. .++.. -...+.+ T Consensus 1 MkVLviGsG--grEhA--ia~~l~~~-~~~~~v~~~pgN~g~~~~~-~~-~~~~~------------------d~~~i~~ 55 (417) T 2ip4_A 1 MKVLVVGSG--GREHA--LLWKAAQS-PRVKRLYAAPGNAGMEALA-EL-VPWNG------------------DVEALAD 55 (417) T ss_dssp CEEEEEESS--HHHHH--HHHHHHTC-SSCCEEEEEECCTTGGGTS-EE-CCCCS------------------CHHHHHH T ss_pred CEEEEECCC--HHHHH--HHHHHHHC-CCCCEEEEECCCHHHHHHC-EE-ECCCC------------------CHHHHHH T ss_conf 989998978--99999--99999729-9989899968976777517-42-15668------------------9999999 Q ss_pred HCCCCCCCEEEE-ECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 100128886898-511776579999866301346311 Q gi|254780767|r 83 LIVSSKPDVLLI-VDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 83 ~i~~~~Pd~vi~-iD~pgFnl~lak~lkk~~~~ipvi 118 (383) .+++++||.||. -..|= .--++..+++. |+|++ T Consensus 56 ~~~~~~idlvivGpE~pL-~~gl~d~l~~~--gi~v~ 89 (417) T 2ip4_A 56 WALAEGIDLTLVGPEAPL-VEGIADAFQAR--GLLLF 89 (417) T ss_dssp HHHHHTCCEEEECSSHHH-HTTHHHHHHHH--TCCEE T ss_pred HHHHHCCCEEEECCCHHH-HHHHHHHHHHC--CCCCC T ss_conf 999859999998974788-87889999857--99765 No 212 >3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli} Probab=47.49 E-value=4.2 Score=19.20 Aligned_cols=20 Identities=20% Similarity=0.594 Sum_probs=15.3 Q ss_pred EEEECCCCCCCCCCCHHHHH Q ss_conf 11100221100366355799 Q gi|254780767|r 118 INYVCPSVWAWREGRARKMC 137 (383) Q Consensus 118 i~yv~PqvWAWr~~R~k~~~ 137 (383) -+|++|.||.|...+--++. T Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (288) T 3c8e_A 4 NTYQPAKVWTWDKSAGGAFA 23 (288) T ss_dssp -CCCCCSSCCCCTTCCCTTT T ss_pred CCCCCCCCCCCCCCCCCCCC T ss_conf 88999742434687888645 No 213 >2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Probab=47.28 E-value=13 Score=16.04 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=24.4 Q ss_pred CCCCCCCEEEEE-CHH-HHH-HHHHHHHHHHC--CCCCCEEEE Q ss_conf 001288868985-117-765-79999866301--346311110 Q gi|254780767|r 84 IVSSKPDVLLIV-DNP-DFT-HRVAKRVRKKM--PNLPIINYV 121 (383) Q Consensus 84 i~~~~Pd~vi~i-D~p-gFn-l~lak~lkk~~--~~ipvi~yv 121 (383) +.+++||++|+= +-| |.+ +.+++.+|+.. .++|++-.- T Consensus 45 l~~~~pdliilD~~lp~~~~G~~l~~~ir~~~~~~~iPii~lt 87 (127) T 2gkg_A 45 IRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVIIG 87 (127) T ss_dssp HHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEEE T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 9847999999975777688899999999838888998389996 No 214 >1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A* Probab=47.09 E-value=13 Score=16.03 Aligned_cols=54 Identities=4% Similarity=-0.017 Sum_probs=36.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 674664599999999998610012888689851177657999986630134631111 Q gi|254780767|r 64 MQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 64 ~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) ..++.+--.+....+.+.+.+...++|.|+++++-||=+- ..+-.. .|+|+++. T Consensus 29 ~~il~~P~~~~~l~~~la~~~~~~~~d~Vvgie~~Gi~lA--~~lA~~-Lg~p~v~~ 82 (186) T 1l1q_A 29 SDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRGFILG--GIVANS-LGVGFVAL 82 (186) T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTSCCCEEEEESGGGHHHH--HHHHHH-HTCEEEEE T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH--HHHHHH-CCCCEEEE T ss_conf 2475799999999999999706699979998455444778--999998-19987877 No 215 >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Probab=46.35 E-value=13 Score=15.95 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=25.1 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 98745999976821478999999999973899839999717 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG 41 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG 41 (383) |++ ||||. | + | ..|+.|++.|.++ +.++.|+.- T Consensus 4 M~~-~vlIt-G-a-G-fIGs~lv~~Ll~~---G~~V~~l~R 36 (286) T 3ius_A 4 MTG-TLLSF-G-H-G-YTARVLSRALAPQ---GWRIIGTSR 36 (286) T ss_dssp -CC-EEEEE-T-C-C-HHHHHHHHHHGGG---TCEEEEEES T ss_pred CCC-EEEEE-C-C-C-HHHHHHHHHHHHC---CCEEEEEEC T ss_conf 898-38998-9-6-1-9999999999978---998999948 No 216 >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Probab=45.94 E-value=13 Score=15.91 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=25.4 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH Q ss_conf 98745999976821478999999999973899839999717899 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSL 44 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m 44 (383) || |+-+++|-.+| .|..+.+.|-+. +.++-+.+.-.+.. T Consensus 1 Mn--KvalVTGas~G--IG~aia~~la~~-Ga~V~i~~r~~~~~ 39 (250) T 2cfc_A 1 MS--RVAIVTGASSG--NGLAIATRFLAR-GDRVAALDLSAETL 39 (250) T ss_dssp CC--CEEEEETTTSH--HHHHHHHHHHHT-TCEEEEEESCHHHH T ss_pred CC--CEEEECCCCCH--HHHHHHHHHHHC-CCEEEEEECCHHHH T ss_conf 99--89999178978--999999999987-99899998988899 No 217 >3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Probab=45.78 E-value=8.3 Score=17.25 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=18.5 Q ss_pred CCCCCEEEEECHHHHHHH-HHHHHHHHCCCCCCEEEE Q ss_conf 128886898511776579-999866301346311110 Q gi|254780767|r 86 SSKPDVLLIVDNPDFTHR-VAKRVRKKMPNLPIINYV 121 (383) Q Consensus 86 ~~~Pd~vi~iD~pgFnl~-lak~lkk~~~~ipvi~yv 121 (383) ..+|.++|++--.|-||. |..+.+.....+.+.-.| T Consensus 86 ~~k~riaIlvS~~gh~L~~Ll~~~~~g~L~~eI~~VI 122 (287) T 3nrb_A 86 TDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGII 122 (287) T ss_dssp TCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEE T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEE T ss_conf 5682489999089700999999877456990499998 No 218 >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenase; HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Probab=45.68 E-value=13 Score=15.88 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=12.0 Q ss_pred CEEEEHHHCCCCCCCHHHCCCCCHHH Q ss_conf 10230244078426124205489899 Q gi|254780767|r 310 TCALPNLIVDYPLVPEYFNSMIRSEA 335 (383) Q Consensus 310 ~i~LpNii~~~~ivPEliQ~~~~~~~ 335 (383) |+|+|=+|-.+.+ -+.+.-+++.++ T Consensus 263 ~~s~P~~ig~~Gi-~~i~~l~L~~~E 287 (309) T 1hyh_A 263 YLSYPAIIGRDGV-LAETTLDLTTDE 287 (309) T ss_dssp EEEEEEEEETTEE-EEECCCCCCHHH T ss_pred EEEEEEEEECCCE-EEEECCCCCHHH T ss_conf 9999999917925-899878999999 No 219 >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii ME49} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 1sov_A 1sow_A* 3czm_A* Probab=45.15 E-value=14 Score=15.83 Aligned_cols=62 Identities=19% Similarity=0.083 Sum_probs=26.4 Q ss_pred HHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHH Q ss_conf 552331156688876275302540577410000102467610230244078426124205489899 Q gi|254780767|r 270 AAMAASGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEA 335 (383) Q Consensus 270 ~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~ 335 (383) .+++.+..--.++.+.+...++.- .-++... .-++--|+|+|=+|-.+.+ -+.+.-++++++ T Consensus 245 ~~ia~a~~~i~~ail~~~~~v~~~-sv~~~g~--yG~~~v~~s~P~~ig~~Gv-~~v~~l~L~~~E 306 (331) T 1pzg_A 245 YAPAASAVAMATSFLNDEKRVIPC-SVYCNGE--YGLKDMFIGLPAVIGGAGI-ERVIELELNEEE 306 (331) T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEE-EEEEESG--GGCEEEEEEEEEEEETTEE-EEECCCCCCHHH T ss_pred HHHHHHHHHHHHHHHCCCCCEEEE-EEEECCC--CCCCCEEEEEEEEECCCEE-EEECCCCCCHHH T ss_conf 889987889899874379978999-9991577--7888669999999859858-997789999999 No 220 >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Probab=45.06 E-value=14 Score=15.82 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=27.4 Q ss_pred EHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 1367466459999999999861001288868985-11776579999866301346311 Q gi|254780767|r 62 GIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 62 G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi 118 (383) ||.-.++++ +.+.++.+.+++.-||+++++ -.|- --++..+++..+..+++ T Consensus 115 G~~~a~r~i----~v~~~i~~~i~~~~p~a~iin~tNP~--~i~t~~~~~~~~~~~~~ 166 (450) T 3fef_A 115 GIIRGLRAV----PIFAEIARAIRDYAPESWVINYTNPM--SVCTRVLYKVFPGIKAI 166 (450) T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHCTTSEEEECCSSH--HHHHHHHHHHCTTCEEE T ss_pred HHHHHHCCH----HHHHHHHHHHHHCCCCEEEEEECCCC--HHHHHHHHHHCCCCCEE T ss_conf 888762228----99999999998319980899824832--78884578658987459 No 221 >2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli} Probab=44.95 E-value=14 Score=15.81 Aligned_cols=132 Identities=14% Similarity=0.220 Sum_probs=81.6 Q ss_pred CCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC-CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 56505998538743012305111899987640273512620166-33688999999604888505520552035788763 Q gi|254780767|r 191 QWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV-SSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCN 269 (383) Q Consensus 191 ~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd 269 (383) ..+.|.+-||=--. +.+---...+.++.|.++..+.+|-|..+ .-....+.-.+.+.+.+.+++..-++...-+...| T Consensus 29 ~A~~ViIVPGYGmA-vAqAQ~~v~el~~~L~~~g~~V~faIHPVAGRMPGHMNVLLAEA~VPYd~v~emdeIN~~f~~tD 107 (186) T 2bru_C 29 NSHSVIITPGYGMA-VAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTD 107 (186) T ss_dssp HCSEEEEECSBHHH-HTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSSTHHHHHHHHTCCTTTEEESCCCHHHHHHCS T ss_pred HCCEEEEECCHHHH-HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEEECCCHHHHHCHHHHCCCHHHCC T ss_conf 38909997784999-99888999999999997798699995235012676305678750799899848554145201268 Q ss_pred HHHCCCHHHHHHHH--------HHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCC Q ss_conf 55233115668887--------62753025405774100001024676102302440784261 Q gi|254780767|r 270 AAMAASGTVILELA--------LCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVP 324 (383) Q Consensus 270 ~ai~~SGTaTLE~a--------l~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivP 324 (383) ++|+.----+.--| +.|-|.+=+.|..- ...++|-...-|.|..|=+.-++-.- T Consensus 108 v~lVIGANDvVNPaA~~d~~SpIyGMPvl~v~kak~-Viv~KRsm~~GyaGv~NpLF~~~nt~ 169 (186) T 2bru_C 108 TVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQN-VIVFKRSMNTGYAGVQNPLFFKENTH 169 (186) T ss_dssp EEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSE-EEEECSSSCCSSCCCSCTTTBSSSEE T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCE-EEEEECCCCCCCCCCCCCCEECCCCE T ss_conf 999954777417554689999536883003160778-99997677788678877536748847 No 222 >3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Probab=44.83 E-value=12 Score=16.08 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=10.0 Q ss_pred CCCCEEEE-ECHHHHH-HHHHHHHH Q ss_conf 28886898-5117765-79999866 Q gi|254780767|r 87 SKPDVLLI-VDNPDFT-HRVAKRVR 109 (383) Q Consensus 87 ~~Pd~vi~-iD~pgFn-l~lak~lk 109 (383) ++||++++ +.-|+.+ +.+++.+| T Consensus 53 ~~~dlii~D~~mP~~dG~el~~~ir 77 (140) T 3c97_A 53 RQFDVIIMDIQMPVMDGLEAVSEIR 77 (140) T ss_dssp SCCSEEEECTTCCSSCHHHHHHHHH T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH T ss_conf 7998899947999989999999998 No 223 >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1} Probab=44.47 E-value=14 Score=15.76 Aligned_cols=29 Identities=24% Similarity=0.142 Sum_probs=23.2 Q ss_pred CCCCEEEEEECCCCHHHH-----HHHHHHHHHHH Q ss_conf 987459999768214789-----99999999973 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLL-----AGDLIKSLKEM 29 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~-----~a~li~~Lk~~ 29 (383) +++|||.|++|..|.+.- |..+.++|+++ T Consensus 18 ~s~mkiaVl~GG~S~Eh~vSl~Sa~~i~~aL~~~ 51 (367) T 2pvp_A 18 GSHMEFCVLFGGASFEHEISIVSAIALKGVLKDR 51 (367) T ss_dssp --CCCEEEEEECSSTTHHHHHHHHHHHHHHHGGG T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 9998899990858530187999999999987425 No 224 >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Probab=44.35 E-value=14 Score=15.75 Aligned_cols=32 Identities=19% Similarity=0.490 Sum_probs=12.5 Q ss_pred CCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEE Q ss_conf 8886898-5117765-799998663013463111 Q gi|254780767|r 88 KPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 88 ~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~ 119 (383) +||++++ +.-||.+ +.+.+.+++..+.+|+|. T Consensus 49 ~~dlvilD~~mp~~~G~~l~~~~~~~~~~~pvI~ 82 (143) T 3jte_A 49 SIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143) T ss_dssp TCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEE T ss_conf 9739997477777788999999998789996999 No 225 >2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis atcc 12228} Probab=44.15 E-value=14 Score=15.73 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=32.1 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC--CH-------HHHHCCCEEEECHHH Q ss_conf 9874599997682147899999999997389983999971--78-------999478806504445 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG--GP-------SLQKEGLVSLFDFSE 57 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG--G~-------~m~~~G~~~~~~~~~ 57 (383) |++|||-+++|.+. ++.|++.|++. +.+ +..|. |+ .-+..|....+|+.. T Consensus 2 m~~~kIv~lsGGtG----~~~ll~gL~~~-~~~--lt~IVn~~DDggssG~Lr~~~~~~~~gDir~ 60 (332) T 2ppv_A 2 MKQMNVVLIGGGTG----LSVLARGLREF-PID--ITAIVTVADNGGSTGKIRDVMDIPAPGDIRN 60 (332) T ss_dssp -CCEEEEEEECHHH----HHHHHHHHTTS-SEE--EEEEECCCCCSHHHHHHHHHSCCCCCHHHHH T ss_pred CCCCCEEEECCHHH----HHHHHHHHHHC-CCC--EEEEEECCCCCHHHHHHHHHHCCCCCCCHHH T ss_conf 97673899868022----89999999758-998--3999989618704678888839999980989 No 226 >1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative reductase, PSI; 1.28A {Pseudomonas aeruginosa PAO1} SCOP: c.23.5.4 PDB: 1x77_A* Probab=44.10 E-value=14 Score=15.73 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=26.1 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 87459999768214789999999999738998399 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINL 36 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~ 36 (383) ++|||.++.|-++-+-....|++.+.+..+.+.++ T Consensus 5 ~~MKIl~I~GS~R~~S~t~~l~~~~~~~~~~g~ev 39 (193) T 1rtt_A 5 DDIKVLGISGSLRSGSYNSAALQEAIGLVPPGMSI 39 (193) T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEE T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEE T ss_conf 99779999898998888999999999864699989 No 227 >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* Probab=43.91 E-value=14 Score=15.71 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=22.4 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 4599997682147899999999997389983999971 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |||+| +| +||=+ |+.|+++|.++ +.++.++. T Consensus 1 MKILI-tG-atGfi-G~~l~~~L~~~---g~~V~~~~ 31 (312) T 3ko8_A 1 MRIVV-TG-GAGFI-GSHLVDKLVEL---GYEVVVVD 31 (312) T ss_dssp CEEEE-ET-TTSHH-HHHHHHHHHHT---TCEEEEEC T ss_pred CEEEE-EC-CCCHH-HHHHHHHHHHC---CCEEEEEE T ss_conf 96999-88-88689-99999999978---69899997 No 228 >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=43.84 E-value=14 Score=15.70 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=27.2 Q ss_pred CCCC--EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH Q ss_conf 9874--5999976821478999999999973899839999717899 Q gi|254780767|r 1 MNSL--KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSL 44 (383) Q Consensus 1 m~~m--ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m 44 (383) |+++ |+.+++|-.|| .|..+.+.|-+. +.++-+.+..-+.. T Consensus 1 M~rl~gKvalVTGas~G--IG~aia~~la~~-Ga~V~i~~r~~~~l 43 (278) T 1spx_A 1 MTRFAEKVAIITGSSNG--IGRATAVLFARE-GAKVTITGRHAERL 43 (278) T ss_dssp -CTTTTCEEEETTTTSH--HHHHHHHHHHHT-TCEEEEEESCHHHH T ss_pred CCCCCCCEEEEECCCCH--HHHHHHHHHHHC-CCEEEEEECCHHHH T ss_conf 95869988999485878--999999999987-99899997988999 No 229 >2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Probab=43.46 E-value=14 Score=15.66 Aligned_cols=143 Identities=17% Similarity=0.107 Sum_probs=61.8 Q ss_pred CEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCC--CCEEEECCCC-CHHHHHHHHHHHCCCC------------------ Q ss_conf 505998538743012305111899987640273--5126201663-3688999999604888------------------ Q gi|254780767|r 193 KKILLLPGSRAQEIYKILPFFESAVASLVKRNP--FFRFSLVTVS-SQENLVRCIVSKWDIS------------------ 251 (383) Q Consensus 193 ~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~--~~~~~i~~~~-~~~~~~~~~~~~~~~~------------------ 251 (383) +.|++|.|||...=. .+.+.++++.+.-- ++..+.-..+ ..-.....-..+.+.. T Consensus 14 k~V~VF~gs~~~~~~----~~~~~A~~Lg~~La~~g~~lV~GGG~~GlMga~a~g~~~~gg~viGi~~~~l~~~e~~~~~ 89 (215) T 2a33_A 14 RRICVFCGSSQGKKS----SYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPKTLMPRELTGET 89 (215) T ss_dssp SEEEEECCSSCCSSH----HHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEESSCC-------- T ss_pred CEEEEECCCCCCCCC----HHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCC T ss_conf 539998867899597----8999999999999987995998997589999999899856995235456545740004766 Q ss_pred -CEEEEEC---CCCHHHHHHHHHHHCCCH-HHHH-HHH---------HHCCCEEEECCCCCCEE---EEEECCCCCCEEE Q ss_conf -5055205---520357887635523311-5668-887---------62753025405774100---0010246761023 Q gi|254780767|r 252 -PEIIIDK---EQKKQVFMTCNAAMAASG-TVIL-ELA---------LCGIPVVSIYKSEWIVN---FFIFYIKTWTCAL 313 (383) Q Consensus 252 -~~i~~~~---~~~~~~l~~sd~ai~~SG-TaTL-E~a---------l~g~P~IV~Yk~~~lt~---~i~~lik~~~i~L 313 (383) .++.... ..+...+..||+.|+-.| .-|| |+. ....|.+++..-++-.- ++..++.-.+++- T Consensus 90 ~~~~~~~~~~~~Rk~~m~~~sdafIvlPGG~GTLdEl~evltl~qlg~~~kpiilln~~gfw~~l~~~l~~~~~~g~i~~ 169 (215) T 2a33_A 90 VGEVRAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISP 169 (215) T ss_dssp CCEEEEESSHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECGGGTTHHHHHHHHHHHHHTSSCH T ss_pred CCEEEEECCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCH T ss_conf 66557754899999998873878899188741288899999999808878884898365038999999999998799996 Q ss_pred EHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCH Q ss_conf 0244078426124205489899999999984498 Q gi|254780767|r 314 PNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDT 347 (383) Q Consensus 314 pNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~ 347 (383) . ..+++.---+++++.+.+..+.... T Consensus 170 ~--------~~~~i~v~d~~~e~i~~L~~~~~~~ 195 (215) T 2a33_A 170 T--------AREIIVSAPTAKELVKKLEEYAPCH 195 (215) T ss_dssp H--------HHTTEEEESSHHHHHHHHHC----- T ss_pred H--------HCCCEEEECCHHHHHHHHHHCCCCC T ss_conf 9--------8093899399999999999638985 No 230 >3mwf_A Iron-regulated ABC transporter siderophore-bindin SIRA; ABC transporter binding protein, transport protein; HET: SE8; 1.70A {Staphylococcus aureus subsp} PDB: 3mwg_A Probab=43.42 E-value=14 Score=15.66 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=23.6 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 8610012888689851177657999986630134631111 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) .+.|.+-+||+||. +++++-...+.|++. .|++.+ T Consensus 76 ~E~i~~l~PDlVi~--~~~~~~~~~~~L~~~---~p~v~~ 110 (298) T 3mwf_A 76 LEEISKLKPDLIVA--SKVRNEKVYDQLSKI---APTVST 110 (298) T ss_dssp HHHHHHTCCSEEEE--EHHHHGGGHHHHHHH---SCEEEE T ss_pred HHHHHCCCCCEEEE--CCCCCHHHHHHHHCC---CCEECC T ss_conf 99996389985994--176577899985044---853025 No 231 >3gfv_A Uncharacterized ABC transporter solute-binding protein YCLQ; alpha-beta-sandwich, periplasmic binding protein fold (PBP fold); 1.75A {Bacillus subtilis subsp} Probab=43.31 E-value=6.9 Score=17.76 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=14.3 Q ss_pred HHHCCCCCCCEEEEECHHHH Q ss_conf 86100128886898511776 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDF 100 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgF 100 (383) .+.|..-+||+||+.++..- T Consensus 88 ~E~ilal~PDlIi~~~~~~~ 107 (303) T 3gfv_A 88 FDKVAELDPDLIIISARQSE 107 (303) T ss_dssp HHHHHHTCCSEEEECGGGGG T ss_pred HHHHHHCCCCEEEEECCCHH T ss_conf 99997239799999555225 No 232 >3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A* Probab=43.02 E-value=13 Score=16.04 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=25.6 Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHHC--CCCCCEEEE Q ss_conf 00128886898-5117765-79999866301--346311110 Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKKM--PNLPIINYV 121 (383) Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~--~~ipvi~yv 121 (383) +.+.+||+||+ +.-||+| +.+.+.+|+.. ..+|+|..- T Consensus 59 ~~~~~pDlvllD~~mP~~dGlel~~~iR~~~~~~~~pii~lt 100 (358) T 3bre_A 59 ANQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLS 100 (358) T ss_dssp HHHHCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEE T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEC T ss_conf 984499999980888999999999999736455796299963 No 233 >1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, polymorphism, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A* Probab=42.74 E-value=15 Score=15.59 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=36.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC---CCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 367466459999999999861001---2888689851177657999986630134631111 Q gi|254780767|r 63 IMQVVRHLPQFIFRINQTVELIVS---SKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 63 ~~evl~~~~~~~~~~~~~~~~i~~---~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) +..++.+-..+....+.+.+.+++ .++|.++++++-||-+-.+=..+ .|+|+++. T Consensus 29 i~~ll~dp~~~~~~~~~l~~~~~~~~~~~~D~Ivgie~~Gi~la~~lA~~---l~~p~v~~ 86 (180) T 1zn8_A 29 ISPVLKDPASFRAAIGLLARHLKATHGGRIDYIAGLDSRGFLFGPSLAQE---LGLGCVLI 86 (180) T ss_dssp CHHHHHSHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTTHHHHHHHHHHH---HTCEEEEE T ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEHHHHHHH---CCCCEEEE T ss_conf 84476199999999999999998745678889998256643601688997---29982899 No 234 >1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4 Probab=42.73 E-value=15 Score=15.59 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=82.8 Q ss_pred CCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC-CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH Q ss_conf 6505998538743012305111899987640273512620166-336889999996048885055205520357887635 Q gi|254780767|r 192 WKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV-SSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNA 270 (383) Q Consensus 192 ~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ 270 (383) .+.|.+-||=--. +.+---..-+.++.|.++..+.+|-|..+ .-......-.+.+.+.+.+++..-++...-+..+|+ T Consensus 22 A~~ViIVPGYGmA-VAqAQ~~v~el~~~L~~~g~~V~faIHPVAGRMPGHMNVLLAEA~VPYd~v~eMdeIN~~f~~~Dv 100 (184) T 1d4o_A 22 ANSIIITPGYGLC-AAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDL 100 (184) T ss_dssp CSEEEEEECHHHH-HTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHHTCCGGGEEEHHHHGGGGGGCSE T ss_pred CCCEEEECCHHHH-HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHCHHHHCCCCCCCCE T ss_conf 8909997785998-998899999999999977972799832232347752035675228998998386641453200689 Q ss_pred HHCCCHHHHHHHH--------HHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHH Q ss_conf 5233115668887--------62753025405774100001024676102302440784261242 Q gi|254780767|r 271 AMAASGTVILELA--------LCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYF 327 (383) Q Consensus 271 ai~~SGTaTLE~a--------l~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEli 327 (383) +|+.--.-+.--| +.|-|.+=+.|..-. ..++|-+..-|.|..|=+.-++-.-=|+ T Consensus 101 ~lVIGANDvVNPaA~~dp~spI~GMPvl~v~kak~V-iv~KRs~~~GyaGv~NpLF~~~nt~Mlf 164 (184) T 1d4o_A 101 VLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQV-IVMKRSLGVGYAAVDNPIFYKPNTAMLL 164 (184) T ss_dssp EEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCE-EEEESSSCCCTTCCCCGGGGSTTEEEEE T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCEE-EEEECCCCCCCCCCCCCCEECCCCEEEE T ss_conf 999546555584324799996557835682028889-9996788788577867335548837994 No 235 >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Probab=42.59 E-value=12 Score=16.29 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=14.6 Q ss_pred CCCCEEEEHHHCCCCCCCHHHCC-CCCHH Q ss_conf 67610230244078426124205-48989 Q gi|254780767|r 307 KTWTCALPNLIVDYPLVPEYFNS-MIRSE 334 (383) Q Consensus 307 k~~~i~LpNii~~~~ivPEliQ~-~~~~~ 334 (383) ...|+|+|=+|-.+.+. +.+.- +.+++ T Consensus 260 ~~~~~s~P~~ig~~Gv~-~i~~l~~L~~~ 287 (314) T 1mld_A 260 DCPYFSTPLLLGKKGIE-KNLGIGKISPF 287 (314) T ss_dssp SSSEEEEEEEEETTEEE-EECCCCSCCHH T ss_pred CCEEEEEEEEEECCEEE-EECCCCCCCHH T ss_conf 87899998899389589-98178999999 No 236 >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} Probab=42.52 E-value=15 Score=15.57 Aligned_cols=103 Identities=10% Similarity=0.109 Sum_probs=60.1 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383) -|++|+....+ |..++++|++ +++.++.|+-.+.-...|-. +..+.|.|. +++.+. T Consensus 5 ~rvlI~Gag~~----g~~l~~~l~~--~~~y~vvgfiD~d~~~~g~~----i~gi~V~~~--------------~~l~~~ 60 (141) T 3nkl_A 5 KKVLIYGAGSA----GLQLANMLRQ--GKEFHPIAFIDDDRKKHKTT----MQGITIYRP--------------KYLERL 60 (141) T ss_dssp EEEEEECCSHH----HHHHHHHHHH--SSSEEEEEEECSCGGGTTCE----ETTEEEECG--------------GGHHHH T ss_pred CEEEEECCCHH----HHHHHHHHHH--CCCCEEEEEEECCCCCCEEE----ECCCCCCCH--------------HHHHHH T ss_conf 77999877989----9999999987--89966999995786414148----678203668--------------787788 Q ss_pred CCCCCCCEEEEEC--HHHHH-HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHH Q ss_conf 0012888689851--17765-799998663013463111100221100366355 Q gi|254780767|r 84 IVSSKPDVLLIVD--NPDFT-HRVAKRVRKKMPNLPIINYVCPSVWAWREGRAR 134 (383) Q Consensus 84 i~~~~Pd~vi~iD--~pgFn-l~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k 134 (383) +++++.|.|++.. .+... .++...+.+. ++. .++-|.++-|-.++.. T Consensus 61 i~~~~i~~viia~p~~~~~~~~~l~~~~~~~--~i~--i~~vP~~~~~~~~~~~ 110 (141) T 3nkl_A 61 IKKHCISTVLLAVPSASQVQKKVIIESLAKL--HVE--VLTIPNLDDLVNGKLS 110 (141) T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHHHTT--TCE--EEECCCHHHHHTTSSC T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCC--CCC--EEECCCHHHHHCCCCC T ss_conf 8646863899945888999999999987505--972--3777888887349836 No 237 >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Probab=42.49 E-value=15 Score=15.57 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=22.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 4599997682147899999999997389983999971 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |||+|..|- -..|+.|++.|.++ +.++.|+- T Consensus 1 MkILItGat---GfiG~~lv~~Ll~~---g~~V~~~d 31 (338) T 1udb_A 1 MRVLVTGGS---GYIGSHTCVQLLQN---GHDVIILD 31 (338) T ss_dssp CEEEEETTT---SHHHHHHHHHHHHT---TCEEEEEE T ss_pred CEEEEECCC---CHHHHHHHHHHHHC---CCEEEEEE T ss_conf 969998988---78999999999978---49899997 No 238 >1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Probab=42.49 E-value=13 Score=16.01 Aligned_cols=12 Identities=8% Similarity=0.481 Sum_probs=6.1 Q ss_pred HCCCCCCCEEEE Q ss_conf 100128886898 Q gi|254780767|r 83 LIVSSKPDVLLI 94 (383) Q Consensus 83 ~i~~~~Pd~vi~ 94 (383) .+...+||+||- T Consensus 81 ~l~~~~pDLVvS 92 (247) T 1j9j_A 81 VVMDKRVDLIVS 92 (247) T ss_dssp TTSTTCCSEEEE T ss_pred CCCCCCCCEEEE T ss_conf 546999888996 No 239 >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Probab=42.41 E-value=15 Score=15.56 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=46.1 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 59999768214789999999999738998399997178999478806504445311013674664599999999998610 Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELI 84 (383) Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i 84 (383) |.++++|+.+-+..+..+.+.|.+. +-.+++..+.|+ + .+ ....++.+.. T Consensus 33 r~lvv~d~~~~~~~~~~v~~~L~~~-~i~~~~~~~~~~--------~-----------------t~----~~v~~~~~~~ 82 (370) T 1jq5_A 33 KTVVIADEIVWKIAGHTIVNELKKG-NIAAEEVVFSGE--------A-----------------SR----NEVERIANIA 82 (370) T ss_dssp EEEEEECHHHHHHTHHHHHHHHHTT-TCEEEEEECCSS--------C-----------------BH----HHHHHHHHHH T ss_pred EEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEEECCC--------C-----------------CH----HHHHHHHHHH T ss_conf 5999989768899999999999877-996999995999--------9-----------------99----9999999997 Q ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCC Q ss_conf 01288868985117765799998663013463111100221 Q gi|254780767|r 85 VSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSV 125 (383) Q Consensus 85 ~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~Pqv 125 (383) +..++|++|.|= .|=-+-+||.+--. .++|++.. |+. T Consensus 83 ~~~~~D~IvavG-GGs~~D~aK~~A~~-~~~p~i~I--PTt 119 (370) T 1jq5_A 83 RKAEAAIVIGVG-GGKTLDTAKAVADE-LDAYIVIV--PTA 119 (370) T ss_dssp HHTTCSEEEEEE-SHHHHHHHHHHHHH-HTCEEEEE--ESS T ss_pred HHCCCCEEEECC-CCCCCCHHHHHHCC-CCCCEEEE--CCC T ss_conf 604887899737-86302012122101-46632552--364 No 240 >1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Probab=42.38 E-value=15 Score=15.56 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=20.1 Q ss_pred CCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE Q ss_conf 128886898-5117765-7999986630134631111 Q gi|254780767|r 86 SSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 86 ~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383) +++||++|+ +.-||.| +.+.+.+|+. ..+|++-. T Consensus 44 ~~~~dliilD~~mP~~dG~e~~~~~r~~-~~~piI~l 79 (122) T 1zgz_A 44 NQSVDLILLDINLPDENGLMLTRALRER-STVGIILV 79 (122) T ss_dssp HSCCSEEEEESCCSSSCHHHHHHHHHTT-CCCEEEEE T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCCEEEE T ss_conf 3999899997898997728999999847-99939999 No 241 >1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A* Probab=42.22 E-value=15 Score=15.54 Aligned_cols=204 Identities=14% Similarity=0.085 Sum_probs=90.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEE--CHHHCCEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 45999976821478999999999973899839999717899947880650--4445311013674664599999999998 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLF--DFSELSVIGIMQVVRHLPQFIFRINQTV 81 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~--~~~~l~v~G~~evl~~~~~~~~~~~~~~ 81 (383) .++-++..+.|...+. .+.+.+++. .++.|.+..+ .-.+-+ .....+.. T Consensus 2 ~~~avi~~~~~npf~~-~~~~g~~~~--------------a~~~G~~~~~~~~~~~~d--------------~~~q~~~i 52 (288) T 1gud_A 2 AEYAVVLKTLSNPFWV-DMKKGIEDE--------------AKTLGVSVDIFASPSEGD--------------FQSQLQLF 52 (288) T ss_dssp CEEEEEESCSSSHHHH-HHHHHHHHH--------------HHHHTCCEEEEECSSTTC--------------HHHHHHHH T ss_pred CEEEEEECCCCCHHHH-HHHHHHHHH--------------HHHCCCEEEEEECCCCCC--------------HHHHHHHH T ss_conf 6799997989888999-999999999--------------997499799997589899--------------99999999 Q ss_pred HHCCCCCCCEEEEE--CHHHHHHHHHHHHHHHCCCCCCEEEECC----CCCCCCCCCH--------HHHHHHHHHHCCCC Q ss_conf 61001288868985--1177657999986630134631111002----2110036635--------57999998640156 Q gi|254780767|r 82 ELIVSSKPDVLLIV--DNPDFTHRVAKRVRKKMPNLPIINYVCP----SVWAWREGRA--------RKMCAYINQVISIL 147 (383) Q Consensus 82 ~~i~~~~Pd~vi~i--D~pgFnl~lak~lkk~~~~ipvi~yv~P----qvWAWr~~R~--------k~~~~~~d~~~~if 147 (383) +.+...+||.+|+. |.......+. +++++ |||++.+-.+ ..+.....+. ..-....++++. T Consensus 53 ~~~i~~~~Dgii~~~~~~~~~~~~~~-~~~~~--~Ipvv~~~~~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~-- 127 (288) T 1gud_A 53 EDLSNKNYKGIAFAPLSSVNLVMPVA-RAWKK--GIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIID-- 127 (288) T ss_dssp HHHHTSSEEEEEECCSSSSTTHHHHH-HHHHT--TCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHH-- T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHH-HHHHC--CCEEEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH-- T ss_conf 99996599989973356411179999-99858--98499935777754333456870269924789999999999999-- Q ss_pred CCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCC Q ss_conf 77422320025531476388211221001355888976187655650599853874301230511189998764027351 Q gi|254780767|r 148 PFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFF 227 (383) Q Consensus 148 pFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~ 227 (383) ....+ .+ .+.++.++-... ........+.+.....++...+....|....|-.. +.++.+...+|++ T Consensus 128 ----~~~~~-~~-~v~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 194 (288) T 1gud_A 128 ----KLGAE-GG-EVAIIEGKAGNA-SGEARRNGATEAFKKASQIKLVASQPADWDRIKAL------DVATNVLQRNPNI 194 (288) T ss_dssp ----HHGGG-CE-EEEEEECSTTCH-HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHH------HHHHHHHHHCTTC T ss_pred ----HCCCC-CC-EEEEECCCCCCC-HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH------HHHHHHHHCCCCC T ss_conf ----63888-76-698624884320-37899871677765134531001112312468999------9999887419986 Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCEE Q ss_conf 262016633688999999604888505 Q gi|254780767|r 228 RFSLVTVSSQENLVRCIVSKWDISPEI 254 (383) Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~~~~~i 254 (383) ..++......-.-.-..+.+.+.+.++ T Consensus 195 ~~i~~~~d~~a~g~~~al~~~g~~~dv 221 (288) T 1gud_A 195 KAIYCANDTMAMGVAQAVANAGKTGKV 221 (288) T ss_dssp CEEEESSHHHHHHHHHHHHHTTCTTTS T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCCE T ss_conf 057535988999999999976999984 No 242 >2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D domain swapping; 2.03A {Mycobacterium tuberculosis H37RV} Probab=42.03 E-value=15 Score=15.52 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=41.3 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |.+ +|+++--|+ ..+..|...|+.. ++++....... +. T Consensus 3 M~~-~ILlVeDd~---~~~~~l~~~L~~~---g~~v~~a~~~~-----------------------------------~a 40 (230) T 2oqr_A 3 MAT-SVLIVEDEE---SLADPLAFLLRKE---GFEATVVTDGP-----------------------------------AA 40 (230) T ss_dssp -CC-EEEEECSCH---HHHHHHHHHHHHT---TCEEEEECSHH-----------------------------------HH T ss_pred CCC-EEEEEECCH---HHHHHHHHHHHHC---CCEEEEECCHH-----------------------------------HH T ss_conf 998-399996999---9999999999987---99999989999-----------------------------------99 Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 86100128886898-5117765-79999866301346311110 Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383) .+.+..+.||++|+ +..|+.+ ..+.+..++ ...+|++..- T Consensus 41 l~~~~~~~~DliilDi~lp~~~g~~~~~~~~~-~~~~pii~lt 82 (230) T 2oqr_A 41 LAEFDRAGADIVLLDLMLPGMSGTDVCKQLRA-RSSVPVIMVT 82 (230) T ss_dssp HHHHHHHCCSEEEEESSCSSSCHHHHHHHHHH-HCSCSEEEEE T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC-CCCEEEEEEE T ss_conf 99997489989999489999888742023224-5640799982 No 243 >3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas palustris} Probab=42.02 E-value=9.5 Score=16.87 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=10.9 Q ss_pred HCCCCCHHHHHHHHHHH Q ss_conf 20548989999999998 Q gi|254780767|r 327 FNSMIRSEALVRWIERL 343 (383) Q Consensus 327 iQ~~~~~~~i~~~~~~l 343 (383) +.++.|++.+...+..+ T Consensus 243 I~~~dt~~~l~~k~~~~ 259 (288) T 3obi_A 243 ISHRDTPADLVRKGRDI 259 (288) T ss_dssp CCTTCCHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHH T ss_conf 69999999999999999 No 244 >3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Probab=41.95 E-value=15 Score=15.51 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=12.9 Q ss_pred HHHHHHHCCCEEEECCCC Q ss_conf 688876275302540577 Q gi|254780767|r 279 ILELALCGIPVVSIYKSE 296 (383) Q Consensus 279 TLE~al~g~P~IV~Yk~~ 296 (383) -.||..+++|.|-+-.++ T Consensus 173 i~Ea~~l~IPvI~ivDtn 190 (231) T 3bbn_B 173 LRECITLGIPTICLIDTN 190 (231) T ss_dssp HHHHHTTTCCEEECCCSS T ss_pred HHHHHHCCCCEEEEECCC T ss_conf 999997399878874389 No 245 >2ho3_A Oxidoreductase, GFO/IDH/MOCA family; reductive methylation, structural genomics, PSI 2, protein structure initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A Probab=41.83 E-value=15 Score=15.50 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=50.9 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383) |||-|+....-|..| +++|++. +++++.|+..+.-+.+ +.+.+ +++..-.. ... +. T Consensus 2 ~kigiIG~G~~~~~~----~~~l~~~--~~~~lvav~d~~~~~~--~~~a~--~~~~~~~~-------------~~~-e~ 57 (325) T 2ho3_A 2 LKLGVIGTGAISHHF----IEAAHTS--GEYQLVAIYSRKLETA--ATFAS--RYQNIQLF-------------DQL-EV 57 (325) T ss_dssp EEEEEECCSHHHHHH----HHHHHHT--TSEEEEEEECSSHHHH--HHHGG--GSSSCEEE-------------SCH-HH T ss_pred CEEEEECCCHHHHHH----HHHHHHC--CCEEEEEEECCCHHHH--HHHHH--HCCCCCCC-------------CHH-HH T ss_conf 599999983999999----9999868--8908999988999999--99999--84998356-------------859-99 Q ss_pred CCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 00128886898511776579999866301346311 Q gi|254780767|r 84 IVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 84 i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) +.+.++|+|+..--|.+|..+++.+=+. |++|+ T Consensus 58 l~~~~iD~V~I~tp~~~H~~~~~~al~~--gkhV~ 90 (325) T 2ho3_A 58 FFKSSFDLVYIASPNSLHFAQAKAALSA--GKHVI 90 (325) T ss_dssp HHTSSCSEEEECSCGGGHHHHHHHHHHT--TCEEE T ss_pred HHCCCCCEEEEECCCCHHHHHHHHHHHC--CCCHH T ss_conf 7189998999958960315999999863--45122 No 246 >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Probab=41.74 E-value=14 Score=15.76 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=3.9 Q ss_pred EEEECCCCHH Q ss_conf 9997682147 Q gi|254780767|r 7 AVIAGEISGD 16 (383) Q Consensus 7 ~i~aGE~SGD 16 (383) |+.+|-++=| T Consensus 23 yi~aG~P~~~ 32 (262) T 1rd5_A 23 YITAGDPDLA 32 (262) T ss_dssp EEETTSSCHH T ss_pred EEECCCCCHH T ss_conf 9727789978 No 247 >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Probab=41.68 E-value=15 Score=15.49 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=22.2 Q ss_pred CCCCCEEEE-ECHH-HHH-HHHHHHHHHHCCCCCCEEEE Q ss_conf 128886898-5117-765-79999866301346311110 Q gi|254780767|r 86 SSKPDVLLI-VDNP-DFT-HRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 86 ~~~Pd~vi~-iD~p-gFn-l~lak~lkk~~~~ipvi~yv 121 (383) ...||++++ +.-| |++ +.+++.+++. +.+|+|-+- T Consensus 48 ~~~~dlillD~~mp~g~dG~e~~~~ir~~-~~~PvI~lT 85 (140) T 3h5i_A 48 GWYPDLILMDIELGEGMDGVQTALAIQQI-SELPVVFLT 85 (140) T ss_dssp TCCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEEEEE T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEE T ss_conf 69998999726653357899999999856-999899998 No 248 >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* Probab=41.66 E-value=4.7 Score=18.84 Aligned_cols=27 Identities=30% Similarity=0.601 Sum_probs=22.6 Q ss_pred CC-CC-EEEEEECCCCHHHHHHHHHHHHH Q ss_conf 98-74-59999768214789999999999 Q gi|254780767|r 1 MN-SL-KIAVIAGEISGDLLAGDLIKSLK 27 (383) Q Consensus 1 m~-~m-ki~i~aGE~SGD~~~a~li~~Lk 27 (383) || +| ||.|+.|.++|=+-|+.|.+.++ T Consensus 1 M~~~i~~IvIVGgGtAGw~tAa~Lar~~~ 29 (538) T 2aqj_A 1 MNKPIKNIVIVGGGTAGWMAASYLVRALQ 29 (538) T ss_dssp -CCBCCEEEEECCSHHHHHHHHHHHHHCC T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCC T ss_conf 99987579998987899999999998708 No 249 >2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus} Probab=41.25 E-value=16 Score=15.44 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=16.1 Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 99997682147899999999997389983999971 Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |.+....+||=.+|.+|++.|++. +.++.-+- T Consensus 4 I~lgITGasga~~a~~l~~~L~k~---g~~V~vv~ 35 (189) T 2ejb_A 4 IALCITGASGVIYGIKLLQVLEEL---DFSVDLVI 35 (189) T ss_dssp EEEEECSSTTHHHHHHHHHHHHHT---TCEEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHHHHC---CCEEEEEE T ss_conf 999974289999999999999978---99799996 No 250 >1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/beta protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Probab=41.21 E-value=14 Score=15.84 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=16.3 Q ss_pred CCCCCEEEEECHHHHHH---------HHHHHHHHHCCCCCCE Q ss_conf 12888689851177657---------9999866301346311 Q gi|254780767|r 86 SSKPDVLLIVDNPDFTH---------RVAKRVRKKMPNLPII 118 (383) Q Consensus 86 ~~~Pd~vi~iD~pgFnl---------~lak~lkk~~~~ipvi 118 (383) ..+||+||-==..|.|+ -++..+-....|||=| T Consensus 82 ~~~pDlVvSGIN~G~N~g~dv~~sSGTVgAA~Ea~~~GipaI 123 (280) T 1l5x_A 82 GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAL 123 (280) T ss_dssp TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEE T ss_pred CCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCE T ss_conf 899878996676765478105755588999999998199833 No 251 >1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Probab=41.13 E-value=16 Score=15.43 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=56.0 Q ss_pred HHHHHHHHHHHHHHHCCCC--EEEEEECCHHHH-------HCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 4789999999999738998--399997178999-------4788065044453110136746645999999999986100 Q gi|254780767|r 15 GDLLAGDLIKSLKEMVSYP--INLVGVGGPSLQ-------KEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIV 85 (383) Q Consensus 15 GD~~~a~li~~Lk~~~~~~--~~~~giGG~~m~-------~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~ 85 (383) -|.+|-...-.||++.+.+ +....+|++.-+ +-|.+.-+.+++-..-|.- .+ ...+-+.+.++ T Consensus 38 ~D~~AlE~Al~lkE~~g~~~~Vt~ls~Gp~~a~~~Lr~alAmGaD~av~v~d~~~~~~d-~~-------atA~~LA~~i~ 109 (264) T 1o97_C 38 WDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEGSD-AI-------VVGRILTEVIK 109 (264) T ss_dssp HHHHHHHHHHHHHHHCSSCCEEEEEEESCGGGHHHHHHHHHTTCSEEEEECCGGGTTCC-HH-------HHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-HH-------HHHHHHHHHHH T ss_conf 67999999999984479956999998150888999999997279726999605777878-99-------99999999997 Q ss_pred CCCCCEEEE----ECHH--HHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 128886898----5117--76579999866301346311110 Q gi|254780767|r 86 SSKPDVLLI----VDNP--DFTHRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 86 ~~~Pd~vi~----iD~p--gFnl~lak~lkk~~~~ipvi~yv 121 (383) +..||+|++ +|.- -.--.+|..| |+|.+-|| T Consensus 110 ~~~~DLIl~G~qs~D~~tgqvg~~lAe~L-----g~p~vt~v 146 (264) T 1o97_C 110 KEAPDMVFAGVQSSDQAYASTGISVASYL-----NWPHAAVV 146 (264) T ss_dssp HHCCSEEEEESCCTTTCCCCHHHHHHHHH-----TCCEEEEE T ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHH-----CCCCEEEE T ss_conf 43999999914346999883428999981-----99815678 No 252 >2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A Probab=40.95 E-value=16 Score=15.41 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=14.1 Q ss_pred CCCEEEEECHHHHH---HHHHHHHHHHCCCCCCEEE Q ss_conf 88868985117765---7999986630134631111 Q gi|254780767|r 88 KPDVLLIVDNPDFT---HRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 88 ~Pd~vi~iD~pgFn---l~lak~lkk~~~~ipvi~y 120 (383) +=|++|++.+.|=+ +..++.+|++ |++++-. T Consensus 116 ~gDvli~iS~SG~s~~ii~a~~~Ak~~--g~~~iai 149 (198) T 2xbl_A 116 EGDVLIGYSTSGKSPNILAAFREAKAK--GMTCVGF 149 (198) T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHT--TCEEEEE T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC--CCEEEEE T ss_conf 999899970899976899999999985--9989999 No 253 >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Probab=40.62 E-value=16 Score=15.38 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=51.3 Q ss_pred CCCCEEEEEECCCCHH-HHHHHHHHHHHHHCCCCEEEEEECCHH---HHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHH Q ss_conf 9874599997682147-899999999997389983999971789---994788065044453110136746645999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGD-LLAGDLIKSLKEMVSYPINLVGVGGPS---LQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFR 76 (383) Q Consensus 1 m~~mki~i~aGE~SGD-~~~a~li~~Lk~~~~~~~~~~giGG~~---m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~ 76 (383) |+ .||-|+.....|. .|. .+++. .+++++.|+.... .+++. .+...+- . T Consensus 1 M~-irvgiIG~G~~~~~~h~----~~~~~--~~~~~lvav~d~~~~~~~~~~------~~~~~~~--------------~ 53 (349) T 3i23_A 1 MT-VKMGFIGFGKSANRYHL----PYVMI--RETLEVKTIFDLHVNEKAAAP------FKEKGVN--------------F 53 (349) T ss_dssp CC-EEEEEECCSHHHHHTTH----HHHTT--CTTEEEEEEECTTCCHHHHHH------HHTTTCE--------------E T ss_pred CC-EEEEEECCCHHHHHHHH----HHHHC--CCCCEEEEEEECCHHHHHHHH------HHCCCCC--------------E T ss_conf 95-05999988099999999----99961--989789999909999999997------5538993--------------5 Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 999986100128886898511776579999866301346311 Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) +....+.+.+.+||+|+..--|.++..++.++=+. |++|+ T Consensus 54 ~~~~~ell~~~~iD~V~i~tp~~~H~~~~~~al~a--gkhV~ 93 (349) T 3i23_A 54 TADLNELLTDPEIELITICTPAHTHYDLAKQAILA--GKSVI 93 (349) T ss_dssp ESCTHHHHSCTTCCEEEECSCGGGHHHHHHHHHHT--TCEEE T ss_pred ECCHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHC--CCEEE T ss_conf 79999996599988899888714567889999984--99187 No 254 >2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Probab=40.42 E-value=13 Score=15.91 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=25.6 Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC Q ss_conf 00128886898-5117765-799998663013463111100 Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383) Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383) +..++||++|+ ++.||.+ +.+.+++++. ...|+|...+ T Consensus 45 ~~~~~~DliilD~~lp~~~g~~~~~~~r~~-~~~~iIilt~ 84 (238) T 2gwr_A 45 VRELRPDLVLLDLMLPGMNGIDVCRVLRAD-SGVPIVMLTA 84 (238) T ss_dssp HHHHCCSEEEEESSCSSSCHHHHHHHHHTT-CCCCEEEEEE T ss_pred HHHCCCCEEEEECCCCCCCCCCEEECCCCC-CCCCCCCCCC T ss_conf 983799999991677666887123112235-6653110125 No 255 >1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} Probab=40.15 E-value=16 Score=15.33 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=58.3 Q ss_pred CCCCEEEEEECCCCHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHH-----HCCCEEEE-CHH------------HCCEE Q ss_conf 98745999976821478999999-9999738998399997178999-----47880650-444------------53110 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLI-KSLKEMVSYPINLVGVGGPSLQ-----KEGLVSLF-DFS------------ELSVI 61 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li-~~Lk~~~~~~~~~~giGG~~m~-----~~G~~~~~-~~~------------~l~v~ 61 (383) |+. ||.|+.||++|= |..++ +++++. ...++.-+|.+..- ..|...-+ .++ .+.+. T Consensus 1 M~~-kIaIT~GDPaGI--GpEIilka~~~~--~~~~~vvig~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~l~v~ 75 (328) T 1yxo_A 1 MSL-RFALTPGEPAGI--GPDLCLLLARSA--QPHPLIAIASRTLLQERAGQLGLAIDLKDVSPAAWPERPAKAGQLYVW 75 (328) T ss_dssp CCC-CEEEECCSTTSS--HHHHHHHHTTSC--CSSCEEEEECHHHHHHHHHHHTCCCEEEECBTTBCCSSCCCTTEEEEE T ss_pred CCC-EEEEECCCCCHH--HHHHHHHHHHHC--CCCCEEEEECHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCCCEEEEE T ss_conf 996-099988987446--899999999717--999989998999999999984999851366813323302678856785 Q ss_pred EH--------HHH-HHHHHHHHHHHHHHHHHCCCCCCCEEEE------------ECHHHHHHHHHHHHH Q ss_conf 13--------674-6645999999999986100128886898------------511776579999866 Q gi|254780767|r 62 GI--------MQV-VRHLPQFIFRINQTVELIVSSKPDVLLI------------VDNPDFTHRVAKRVR 109 (383) Q Consensus 62 G~--------~ev-l~~~~~~~~~~~~~~~~i~~~~Pd~vi~------------iD~pgFnl~lak~lk 109 (383) -. .++ -.+-......++...+.+++.+-|++|+ ..|||..--+|++.. T Consensus 76 ~~~~~~~~~~G~~~~~~g~~~~~~l~~Av~~~~~g~~~alVT~PInK~~i~~aG~~f~GHTE~la~~~~ 144 (328) T 1yxo_A 76 DTPLAAPVRPGQLDRANAAYVLETLTRAGQGCLDGHFAGMITAPVHKGVINEAGIPFSGHTEFLADLTH 144 (328) T ss_dssp ECCCSSCCCTTCCCGGGHHHHHHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCCCHHHHHHHHTT T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCEEHHHHHHHC T ss_conf 364456778897498999999999999999997197543660782789998679984866598776504 No 256 >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* Probab=39.96 E-value=13 Score=15.88 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=32.1 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383) |||+|.. - || ..|+.|++.|.+. + +..++.-.. -+...|+.+ . +.+.+. T Consensus 1 MKILItG-~-tG-fIG~~l~~~L~~~-g---~~v~~~~~~-----~~~~~Dl~d------------~-------~~~~~~ 49 (299) T 1n2s_A 1 MNILLFG-K-TG-QVGWELQRSLAPV-G---NLIALDVHS-----KEFCGDFSN------------P-------KGVAET 49 (299) T ss_dssp CEEEEEC-T-TS-HHHHHHHHHTTTT-S---EEEEECTTC-----SSSCCCTTC------------H-------HHHHHH T ss_pred CEEEEEC-C-CC-HHHHHHHHHHHHC-C---CEEEEECCC-----CCCCCCCCC------------H-------HHHHHH T ss_conf 9699989-9-98-8999999999868-9---999997898-----543176889------------9-------999999 Q ss_pred CCCCCCCEEEE Q ss_conf 00128886898 Q gi|254780767|r 84 IVSSKPDVLLI 94 (383) Q Consensus 84 i~~~~Pd~vi~ 94 (383) ++..+||+||- T Consensus 50 l~~~kpD~Vih 60 (299) T 1n2s_A 50 VRKLRPDVIVN 60 (299) T ss_dssp HHHHCCSEEEE T ss_pred HHHCCCCEEEE T ss_conf 99759989997 No 257 >3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, DNA-binding protein; 3.10A {Cauliflower mosaic virus} Probab=39.79 E-value=16 Score=15.30 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 674664599999999998610012888 Q gi|254780767|r 64 MQVVRHLPQFIFRINQTVELIVSSKPD 90 (383) Q Consensus 64 ~evl~~~~~~~~~~~~~~~~i~~~~Pd 90 (383) .|++.....+.+-++++.+.+.+.+|+ T Consensus 12 ~~~l~~~k~l~~di~~il~~~~S~~~~ 38 (129) T 3f6n_A 12 SEILSDQKSMKADIKAILELLGSQNPI 38 (129) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 999999999999999999742799720 No 258 >3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae} Probab=39.62 E-value=16 Score=15.28 Aligned_cols=84 Identities=10% Similarity=0.008 Sum_probs=46.8 Q ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 874599997-6821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 2 NSLKIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 2 ~~mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) +.|||+++| |..|.-+.+.++-++.+++ +.++++..++=.+.++. .++..+ +.==|.+...++++ T Consensus 5 k~~kIlL~C~~GmSSsll~~km~~~a~~~-~~~~~v~A~~~~~~~~~-------~~~~Dv------iLL~PQv~~~~~~i 70 (108) T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLT-EVRVIANSGAYGAHYDI-------MGVYDL------IILAPQVRSYYREM 70 (108) T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHH-TCSEEEEEEETTSCTTT-------GGGCSE------EEECGGGGGGHHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEEEHHHHHHH-------HHCCCE------EEECHHHHHHHHHH T ss_conf 63469999799975999999999999976-99789999538999988-------642899------99866799999999 Q ss_pred HHHCCCCCCCEEEEECHHHH Q ss_conf 86100128886898511776 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDF 100 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgF 100 (383) .+...+..- -+..||..++ T Consensus 71 ~~~~~~~~i-pv~~I~~~~Y 89 (108) T 3nbm_A 71 KVDAERLGI-QIVATRGMEY 89 (108) T ss_dssp HHHHTTTTC-EEEECCHHHH T ss_pred HHHHHHCCC-CEEEECHHHH T ss_conf 999877399-2887287874 No 259 >1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Probab=39.18 E-value=17 Score=15.24 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=22.2 Q ss_pred CCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 00128886898511776579999866301346311110 Q gi|254780767|r 84 IVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 84 i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv 121 (383) +...+.+.+|+--+.+-...++..+.+. ++|.+... T Consensus 65 li~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~ 100 (346) T 1usg_A 65 IVNDGIKYVIGHLCSSSTQPASDIYEDE--GILMISPG 100 (346) T ss_dssp HHHTTCCEEECCSSHHHHHHHHHHHHHH--TCEEEECC T ss_pred HHHCCCCEEECCCCCCCHHHCCHHHHHC--CCCCCCCC T ss_conf 9976991787786662033200245406--86422576 No 260 >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi} Probab=38.69 E-value=17 Score=15.19 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=50.8 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH-----HCCCEEEECHHHCCEEEHHHHHHHHHHHHH Q ss_conf 987459999768214789999999999738998399997178999-----478806504445311013674664599999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQ-----KEGLVSLFDFSELSVIGIMQVVRHLPQFIF 75 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~-----~~G~~~~~~~~~l~v~G~~evl~~~~~~~~ 75 (383) |+. ||.|+.+ |-+ |..+.+.|.+. + ++++..++-+.-+ ..+.... .. + +.. T Consensus 4 m~~-kI~ViGa---G~v-G~~va~~L~~~-~-~~~v~~~dr~~~~~~~~~~~~~~~~----~~------d-~~d------ 59 (118) T 3ic5_A 4 MRW-NICVVGA---GKI-GQMIAALLKTS-S-NYSVTVADHDLAALAVLNRMGVATK----QV------D-AKD------ 59 (118) T ss_dssp TCE-EEEEECC---SHH-HHHHHHHHHHC-S-SEEEEEEESCHHHHHHHHTTTCEEE----EC------C-TTC------ T ss_pred CCC-CEEEECC---CHH-HHHHHHHHHHC-C-CCCEEEECCCHHHHHHCCCCCCCCC----CC------C-CCC------ T ss_conf 607-8899867---999-99999999878-9-9847861265666410001222211----12------4-489------ Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCC Q ss_conf 99999861001288868985117765799998663013463 Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLP 116 (383) Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ip 116 (383) ...+.+.+ .+.|+|+..-.+.++..+++.+-+. |++ T Consensus 60 -~~~l~~~l--~~~DvVi~~~p~~~~~~ia~aa~~~--g~~ 95 (118) T 3ic5_A 60 -EAGLAKAL--GGFDAVISAAPFFLTPIIAKAAKAA--GAH 95 (118) T ss_dssp -HHHHHHHT--TTCSEEEECSCGGGHHHHHHHHHHT--TCE T ss_pred -HHHHHHHH--CCCCEEEECCCCCCCHHHHHHHHHH--CCC T ss_conf -99999998--5998999837830459999999990--999 No 261 >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Probab=38.54 E-value=17 Score=15.17 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=14.9 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHH Q ss_conf 9874599997682147899999999997 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKE 28 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~ 28 (383) |++.||-|+ | .|+ .|+.+.-.|.. T Consensus 3 m~~~KI~Ii-G--aG~-VG~~~a~~l~~ 26 (321) T 3p7m_A 3 MARKKITLV-G--AGN-IGGTLAHLALI 26 (321) T ss_dssp CCCCEEEEE-C--CSH-HHHHHHHHHHH T ss_pred CCCCEEEEE-C--CCH-HHHHHHHHHHH T ss_conf 888879999-9--898-99999999982 No 262 >3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Probab=38.11 E-value=17 Score=15.13 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=73.0 Q ss_pred CCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC-CCHH-HHHHHHHHHCCCCCEEEEECCCCHHHHHHH Q ss_conf 56505998538743012305111899987640273512620166-3368-899999960488850552055203578876 Q gi|254780767|r 191 QWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV-SSQE-NLVRCIVSKWDISPEIIIDKEQKKQVFMTC 268 (383) Q Consensus 191 ~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~-~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s 268 (383) +..+|+-...||- .+.++....++..++++++.-. |..+ ......+.+.+++..++. ......+|..+ T Consensus 121 dg~~ILTh~~S~t---------V~~~l~~A~~~gk~f~V~v~EsrP~~~G~~la~~L~~~GI~vt~I~-Dsav~~~m~~v 190 (315) T 3ecs_A 121 DGATILTHAYSRV---------VLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVL-DAAVGYIMEKA 190 (315) T ss_dssp TTEEEEECSCCHH---------HHHHHHHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEEC-GGGHHHHGGGC T ss_pred CCCEEEEECCCHH---------HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEC-HHHHHHHHHCC T ss_conf 9999997488099---------9999999998699089999579986327999999997799879976-57999997508 Q ss_pred HHHHC-------------CCHHHHH--HHHHHCCCEEEE---CCCCCCEEEEEECC----CCCCEEEEHHHCCCC----- Q ss_conf 35523-------------3115668--887627530254---05774100001024----676102302440784----- Q gi|254780767|r 269 NAAMA-------------ASGTVIL--ELALCGIPVVSI---YKSEWIVNFFIFYI----KTWTCALPNLIVDYP----- 321 (383) Q Consensus 269 d~ai~-------------~SGTaTL--E~al~g~P~IV~---Yk~~~lt~~i~~li----k~~~i~LpNii~~~~----- 321 (383) |.+++ .+||..+ =+..+++|.+|+ ||.....-.--+-+ +.+.-.+..--.++. T Consensus 191 d~VlvGAd~V~~nG~v~nkiGT~~iA~~Ak~~~vPvyV~aes~Kf~~~~~~~~~~i~~e~~~~~~~~~~~~~~~~v~v~n 270 (315) T 3ecs_A 191 DLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQTGQDLKEEH 270 (315) T ss_dssp SEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGTC-------------CCBCC T ss_pred CEEEEEEEEEECCCCEEEHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCC T ss_conf 88998201896388885564189999998763997698325656766455655667612026766033377899976778 Q ss_pred -----CCCHHH------CCCCCHHHHHHHHHHHHCCHHH Q ss_conf -----261242------0548989999999998449899 Q gi|254780767|r 322 -----LVPEYF------NSMIRSEALVRWIERLSQDTLQ 349 (383) Q Consensus 322 -----ivPEli------Q~~~~~~~i~~~~~~ll~d~~~ 349 (383) +=|||| .+-++|..++.++.+++-.+.. T Consensus 271 p~fD~tP~~lIt~iiTE~Gi~~Ps~v~~~L~kly~~~~~ 309 (315) T 3ecs_A 271 PWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLYLAAAE 309 (315) T ss_dssp CSEEEECGGGCSEEEETTEEECGGGHHHHHHHHHTCC-- T ss_pred CCEECCCHHHCCEEECCCCCCCHHHHHHHHHHHHHCCHH T ss_conf 652076989899998689826758899999997534101 No 263 >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri} Probab=37.47 E-value=18 Score=15.06 Aligned_cols=25 Identities=16% Similarity=0.477 Sum_probs=12.6 Q ss_pred CCCCCEEEE-ECHHHHH-HHHHHHHHH Q ss_conf 128886898-5117765-799998663 Q gi|254780767|r 86 SSKPDVLLI-VDNPDFT-HRVAKRVRK 110 (383) Q Consensus 86 ~~~Pd~vi~-iD~pgFn-l~lak~lkk 110 (383) +++||++++ +.-|+.| +.+.+.+|+ T Consensus 48 ~~~pdlillD~~mP~~dG~el~~~ir~ 74 (132) T 3lte_A 48 TFEPAIMTLDLSMPKLDGLDVIRSLRQ 74 (132) T ss_dssp HTCCSEEEEESCBTTBCHHHHHHHHHT T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHH T ss_conf 479999999689878889999999984 No 264 >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Probab=37.15 E-value=18 Score=15.03 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=23.9 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9874599997682147899999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) || |+.+++|-.|| .|..+.+.|-++ + .++...+ T Consensus 1 Mk--KvalVTGas~G--IG~aiA~~la~~-G--a~V~i~~ 33 (256) T 1geg_A 1 MK--KVALVTGAGQG--IGKAIALRLVKD-G--FAVAIAD 33 (256) T ss_dssp -C--CEEEEETTTSH--HHHHHHHHHHHT-T--CEEEEEE T ss_pred CC--CEEEECCCCCH--HHHHHHHHHHHC-C--CEEEEEE T ss_conf 99--89999166558--999999999987-9--9899997 No 265 >1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of NADP, oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A* Probab=37.06 E-value=18 Score=15.02 Aligned_cols=135 Identities=15% Similarity=0.219 Sum_probs=83.6 Q ss_pred CCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC-CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 56505998538743012305111899987640273512620166-33688999999604888505520552035788763 Q gi|254780767|r 191 QWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV-SSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCN 269 (383) Q Consensus 191 ~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd 269 (383) ..+.|.+-||=--. +.+---..-+.++.|.++..+.+|-|..+ .-......-.+.+.+.+.+++..-++...-+..+| T Consensus 44 ~A~~VIIVPGYGMA-VAQAQh~V~El~~~L~~~g~~V~faIHPVAGRmPGHmNVLLAEA~VpYd~v~emdeiN~~f~~~D 122 (207) T 1djl_A 44 EANSIIITPGYGLC-AAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTD 122 (207) T ss_dssp HCSEEEEEECHHHH-HHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGGGGGGCS T ss_pred CCCEEEEECCHHHH-HHHHHHHHHHHHHHHHHCCCEEEEEEEECHHCCCCHHHHHEEECCCCHHHHHCHHHHCCCHHCCC T ss_conf 69859998682799-99888999999999997799699985063101643053301004898899727464155211087 Q ss_pred HHHCCCHHHHH--------HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHH Q ss_conf 55233115668--------88762753025405774100001024676102302440784261242 Q gi|254780767|r 270 AAMAASGTVIL--------ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYF 327 (383) Q Consensus 270 ~ai~~SGTaTL--------E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEli 327 (383) ++|+.--.=+. ...+.|-|.+=+.|..-. ..++|=+..-|.+..|=+.-++-.-=|+ T Consensus 123 v~lViGANDvvNPaA~~dp~spI~GMPil~v~~ak~V-iv~KRsm~~GyaGv~NpLF~~~nt~Mlf 187 (207) T 1djl_A 123 LVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQV-IVMKRSLGVGYAAVDNPIFYKPNTAMLL 187 (207) T ss_dssp EEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEE-EEEESSSCCCTTCCCCGGGGSTTEEEEE T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCEE-EEEECCCCCCCCCCCCCCEECCCCEEEE T ss_conf 9999547654485113799996479955571508789-9996778788577867334448836994 No 266 >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} Probab=37.03 E-value=10 Score=16.60 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=71.1 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383) |+.+|+.|+ | +|| .-|..|++-|.++ |++++..+.+..- .+|-..-.-...+....+-.....+ ....+ T Consensus 17 ms~~kv~Iv-G-asG-yvG~eLlrlL~~H--P~~ei~~l~aS~~-saGk~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 85 (381) T 3hsk_A 17 MSVKKAGVL-G-ATG-SVGQRFILLLSKH--PEFEIHALGASSR-SAGKKYKDAASWKQTETLPETEQDI-----VVQEC 85 (381) T ss_dssp -CCEEEEEE-T-TTS-HHHHHHHHHHTTC--SSEEEEEEEECTT-TTTSBHHHHCCCCCSSCCCHHHHTC-----BCEES T ss_pred CCEEEEEEE-C-CHH-HHHHHHHHHHHCC--CCCCEEEEEECCC-CCCCCHHHCCCCCCCCCCCCCCCCE-----EEEEC T ss_conf 752279999-9-701-9999999999749--9970689986475-5896434406653431355566540-----58845 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE-----EEC---CCCCCCCCCC-HHHHHHHHHHHCCCCCCCH Q ss_conf 861001288868985117765799998663013463111-----100---2211003663-5579999986401567742 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN-----YVC---PSVWAWREGR-ARKMCAYINQVISILPFEK 151 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~-----yv~---PqvWAWr~~R-~k~~~~~~d~~~~ifpFE~ 151 (383) .......+.|++++.=-.|....+++.+..+ ++.+|- .-. |-+|.|-..- ...+..+ .. . T Consensus 86 ~~~~~~~~~DvvFlalP~~~s~~~~~~~~~~--g~~vID~Ssa~R~~~d~~~~~~~~~~~~~~~~~~~---~~------~ 154 (381) T 3hsk_A 86 KPEGNFLECDVVFSGLDADVAGDIEKSFVEA--GLAVVSNAKNYRREKDVPLVVPIVNPEHIDVVENK---VK------Q 154 (381) T ss_dssp SSCTTGGGCSEEEECCCHHHHHHHHHHHHHT--TCEEEECCSTTTTCTTSCEECTTTCGGGGHHHHHH---HH------H T ss_pred CHHHCHHCCCEEEECCCCHHHHHHHHHHHHC--CCEEECCHHHHHCCCCCCEEEECCCHHHHHHHHHH---HH------H T ss_conf 4110400177899648826788887877637--95552255664234784224410486778999862---13------2 Q ss_pred HHHHCCCCCCEEECCCCCCC Q ss_conf 23200255314763882112 Q gi|254780767|r 152 EVMQRLGGPPTTFVGHPLSS 171 (383) Q Consensus 152 ~~f~k~~~~~~~fVGHPl~d 171 (383) +++.. .-..+..|.||-.- T Consensus 155 e~~r~-~i~~a~lIanPGC~ 173 (381) T 3hsk_A 155 AVSKG-GKKPGFIICISNCS 173 (381) T ss_dssp HHHTT-CCCCCEEEEECCHH T ss_pred HHCCC-CHHCCCHHHCCCCC T ss_conf 20100-01010066627962 No 267 >1vkm_A Conserved hypothetical protein TM1464; conserved hypothetical protein possibly involved in carbohydrate metabolism, structural genomics; HET: MSE UNL; 1.90A {Thermotoga maritima MSB8} SCOP: c.138.1.1 Probab=36.02 E-value=13 Score=15.98 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=34.0 Q ss_pred HHHHHHHHHHHCCCH-------HHHHHHH-HHCCCEEEECCCCCCEEEEEE--CCCCCC Q ss_conf 357887635523311-------5668887-627530254057741000010--246761 Q gi|254780767|r 262 KQVFMTCNAAMAASG-------TVILELA-LCGIPVVSIYKSEWIVNFFIF--YIKTWT 310 (383) Q Consensus 262 ~~~l~~sd~ai~~SG-------TaTLE~a-l~g~P~IV~Yk~~~lt~~i~~--lik~~~ 310 (383) ...|+.+..+++||| -.|||.. -+|+| |+.|+++.+-.|+.+ -+++++ T Consensus 143 L~eL~~tpv~VVcaG~KsiLDi~~TlE~LET~GV~-Vvgy~td~fPaFy~~~Sg~~~~~ 200 (297) T 1vkm_A 143 LTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIP-LVGFRTNEFPLFFSRKSGRRVPR 200 (297) T ss_dssp HHHHTTCCEEEEESBBCTTSCHHHHHHHHHHTTCC-EEEESCSBCCBTTBSCCSCBCCE T ss_pred HHHHHCCCEEEEECCCHHHCCCHHHHHHHHHCCEE-EEEECCCCCCCEEECCCCCCCCC T ss_conf 89983398179940635440547789998736637-99626887551440789985887 No 268 >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Probab=35.10 E-value=19 Score=14.82 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=26.8 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 45999976821478999999999973899839999717 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG 41 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG 41 (383) ||+.+++|-.|| .|..+.+.|.+. +.++..++- T Consensus 1 mKVvlVTGas~G--IG~aia~~la~~---Ga~Vv~~~~ 33 (257) T 1fjh_A 1 MSIIVISGCATG--IGAATRKVLEAA---GHQIVGIDI 33 (257) T ss_dssp CCEEEEETTTSH--HHHHHHHHHHHT---TCEEEEEES T ss_pred CCEEEECCCCCH--HHHHHHHHHHHC---CCEEEEEEC T ss_conf 979999198789--999999999987---999999968 No 269 >3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea, thermostable, catalytic DYAD, hydrolase; 2.30A {Pyrococcus horikoshii} PDB: 2deo_A Probab=34.71 E-value=20 Score=14.78 Aligned_cols=64 Identities=16% Similarity=0.368 Sum_probs=36.9 Q ss_pred HHHHHHCCCCCCCEEEE-ECHHHH----HHHHHHHHHHHCCCCCCEEEECCC-CCCCCCCCHHHHHHHHHHHCC Q ss_conf 99986100128886898-511776----579999866301346311110022-110036635579999986401 Q gi|254780767|r 78 NQTVELIVSSKPDVLLI-VDNPDF----THRVAKRVRKKMPNLPIINYVCPS-VWAWREGRARKMCAYINQVIS 145 (383) Q Consensus 78 ~~~~~~i~~~~Pd~vi~-iD~pgF----nl~lak~lkk~~~~ipvi~yv~Pq-vWAWr~~R~k~~~~~~d~~~~ 145 (383) .+..+...+.+.+.+++ ||+||= ...++..+++. ..|++-||.|- =+| .+-...+.-.+|+++. T Consensus 28 ~~~l~~a~~~~~kaivL~IdSPGG~v~~~~~I~~~i~~~--~~~v~~~v~~~~~~A--aS~g~~ia~a~d~i~~ 97 (230) T 3bpp_A 28 DRYITIAEQDNAEAIIIELDTPGGRADAMMNIVQRIQQS--KIPVIIYVYPPGASA--ASAGTYIALGSHLIAM 97 (230) T ss_dssp HHHHHHHHHTTCSEEEEEEEBSCBCHHHHHHHHHHHHTC--SSCEEEEECSTTCEE--ETHHHHHHHTSSEEEE T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHC--CCCCCEEEEECCHHH--HHHHHHHHHCCCEEEE T ss_conf 999999976899869999859881899999999998604--678857999734467--7778998850898997 No 270 >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Probab=34.26 E-value=20 Score=14.73 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=25.3 Q ss_pred HHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHH Q ss_conf 55233115668887627530254057741000010246761023024407842612420548989 Q gi|254780767|r 270 AAMAASGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSE 334 (383) Q Consensus 270 ~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~ 334 (383) .+++.+-.-.+++.+.+...+... ..++... .-++--|+|+|=.+ |+.=+-+.++-..+++ T Consensus 223 ~~~a~~~~~~~~~i~~~~~~v~~~-s~~~~g~--yg~~~v~~s~P~~l-g~~Gv~~~~~l~L~~~ 283 (308) T 2d4a_B 223 YGPAAGLVLTVEAIKRDSKRIYPY-SLYLQGE--YGYNDIVAEVPAVI-GKSGIERIIELPLTED 283 (308) T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEE-EEEEESG--GGCEEEEEEEEEEE-ETTEEEEECCCCCCHH T ss_pred HHHHHHHHHHHHHHCCCCCEEEEE-EEEECCC--CCCCCEEEEEEEEE-CCCCEEEECCCCCCHH T ss_conf 599999999999752698737887-8875156--78777899964898-4894599768998999 No 271 >3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A Probab=33.86 E-value=20 Score=14.69 Aligned_cols=171 Identities=15% Similarity=0.208 Sum_probs=86.5 Q ss_pred CHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE----------CHHHHHHHHHHHHHHHC-CCCCCEEEEC Q ss_conf 444531101367466459999999999861001288868985----------11776579999866301-3463111100 Q gi|254780767|r 54 DFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIV----------DNPDFTHRVAKRVRKKM-PNLPIINYVC 122 (383) Q Consensus 54 ~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~i----------D~pgFnl~lak~lkk~~-~~ipvi~yv~ 122 (383) +++|--+.|..+.. ..+.|...++++ +..+|++++.+ |-. .+|+.+..+. ..+|++.|=+ T Consensus 86 ~leE~Di~g~~~~~---~eL~r~i~~l~~--~r~~Pk~IfV~sTC~seiIGdDl~----~va~~l~~~~~~~v~v~~~~~ 156 (437) T 3aek_A 86 VLEEQDLAGLADAH---KELDREVAKLLE--RRPDIRQLFLVGSCPSEVLKLDLD----RAAERLSGLHAPHVRVYSYTG 156 (437) T ss_dssp ECCGGGGSSSCCHH---HHHHHHHHHHHH--TCTTCCEEEEEECHHHHHTTCCHH----HHHHHHHHHSTTTCEEEEEEC T ss_pred ECCCCHHHCCCCCH---HHHHHHHHHHHH--HCCCCCEEEEECCCCHHHHCCCHH----HHHHHHHHHCCCCCEEEEECC T ss_conf 54613642557627---999999999996--089987899974683887677899----999999872089824996248 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCC Q ss_conf 22110036635579999986401567742232002553147638821122100135588897618765565059985387 Q gi|254780767|r 123 PSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSR 202 (383) Q Consensus 123 PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR 202 (383) |.+ ..+-..-....+..++--.| +...-++..+|. +-+.. ...-....++.|+. +..++||++ T Consensus 157 ~g~---~~~~~~G~d~~l~aLv~~~~-------~~~~~~v~i~G~-~~~~d--~~ei~rlL~~~GI~----v~~~~p~~~ 219 (437) T 3aek_A 157 SGL---DTTFTQGEDTCLAAMVPTLD-------TTEAAELIVVGA-LPDVV--EDQCLSLLTQLGVG----PVRMLPARR 219 (437) T ss_dssp CTT---TCCTTHHHHHHHHHHGGGSC-------BCCCCCEEEESC-CCHHH--HHHHHHHHHHTTCC----CEEEESCSS T ss_pred CCC---CCCHHHHHHHHHHHHHCCCC-------CCCCCCCEEECC-CCCCH--HHHHHHHHHHCCCE----EEEECCCCC T ss_conf 874---53367999999999845268-------877876214146-78406--99999999986997----899838987 Q ss_pred CCCHHHH---------CCCHHHHHHHHHHCCCCCEEEE--CCC-CCHHHHHHHHHHHCCCC Q ss_conf 4301230---------5111899987640273512620--166-33688999999604888 Q gi|254780767|r 203 AQEIYKI---------LPFFESAVASLVKRNPFFRFSL--VTV-SSQENLVRCIVSKWDIS 251 (383) Q Consensus 203 ~~EI~~~---------lP~~l~~~~~l~~~~~~~~~~i--~~~-~~~~~~~~~~~~~~~~~ 251 (383) ..|+..+ -|.+..++..+.+++- .-+.- |.. .....+++...+.++.+ T Consensus 220 ~~~l~~~~~~~~~i~~~p~~~~~a~~le~r~g-~p~~~~~PiG~egT~~wL~~Ia~~~Gi~ 279 (437) T 3aek_A 220 SDIEPAVGPNTRFILAQPFLGETTGALERRGA-KRIAAPFPFGEEGTTLWLKAVADAYGVS 279 (437) T ss_dssp GGGCCCBCTTCEEEESSTTCHHHHHHHHHTTC-EECCCCCSCHHHHHHHHHHHHHHHTTCC T ss_pred HHHHHHCCCCCEEEEECHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 88897446665788746889999999998469-6643789775699999999999884887 No 272 >3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} Probab=33.53 E-value=20 Score=14.66 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=11.9 Q ss_pred HHCCCHHHHH-HHHHHCCCEEEE Q ss_conf 5233115668-887627530254 Q gi|254780767|r 271 AMAASGTVIL-ELALCGIPVVSI 292 (383) Q Consensus 271 ai~~SGTaTL-E~al~g~P~IV~ 292 (383) .+...|...+ .++-+.+|.+++ T Consensus 479 Gilk~GA~iv~Ala~~~vP~itv 501 (760) T 3ff6_A 479 QVLKFGAYIVDGLRQYKQPILIY 501 (760) T ss_dssp THHHHHHHHHHHHHTCCSCEEEE T ss_pred HHHHHHHHHHHHHHCCCCCEEEE T ss_conf 89999999999997089987999 No 273 >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, structurual genomics; 2.20A {Pseudomonas aeruginosa PAO1} SCOP: c.2.1.3 d.81.1.1 Probab=33.05 E-value=21 Score=14.61 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=59.6 Q ss_pred CCC-CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 987-4599997682147899999999997389983999971789994788065044453110136746645999999999 Q gi|254780767|r 1 MNS-LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 1 m~~-mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) |++ |||-|+.+ || .-|..|++-|.++.-|..++..+..++ ++|-..-+.-+++.+-.+ T Consensus 3 Ms~~i~VaIvGA--TG-yvG~eLi~lL~~~~hP~~~l~~~aS~~--saGk~i~~~~~~l~v~~l---------------- 61 (340) T 2hjs_A 3 MSQPLNVAVVGA--TG-SVGEALVGLLDERDFPLHRLHLLASAE--SAGQRMGFAESSLRVGDV---------------- 61 (340) T ss_dssp --CCCCEEEETT--TS-HHHHHHHHHHHHTTCCCSCEEEEECTT--TTTCEEEETTEEEECEEG---------------- T ss_pred CCCCCEEEEECC--CC-HHHHHHHHHHHHCCCCCCEEEEEECCC--CCCCEEEECCEEEEEEEC---------------- T ss_conf 999855999888--55-999999999986699845399998667--789776689927899968---------------- Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 9861001288868985117765799998663013463111 Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383) +...-.+.|+|++---.|....++..+.+. |++++- T Consensus 62 --~~~~~~~~DvvF~alp~~~s~~~~~~~~~~--g~~ViD 97 (340) T 2hjs_A 62 --DSFDFSSVGLAFFAAAAEVSRAHAERARAA--GCSVID 97 (340) T ss_dssp --GGCCGGGCSEEEECSCHHHHHHHHHHHHHT--TCEEEE T ss_pred --CHHHHCCCCEEEECCCCCHHHHHHHHHHHC--CEEEEE T ss_conf --732420488899858861479999998546--917997 No 274 >2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} Probab=32.99 E-value=21 Score=14.60 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=25.2 Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 6100128886898511776579999866301346311110 Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV 121 (383) Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv 121 (383) +.+..++||+|++=|-.| +.+++++|+...++|++..- T Consensus 38 ~~~~~~~~Dlvilp~~~G--~~l~~~ir~~~~~~pIi~lt 75 (223) T 2hqr_A 38 YLMDIRNYDLVMVSDKNA--LSFVSRIKEKHSSIVVLVSS 75 (223) T ss_dssp HHHTTSCCSEEEECCTTH--HHHHHHHHHHCTTSEEEEEE T ss_pred HHHHCCCCCEEEECCCCH--HHHHHHHHHCCCCCEEEEEC T ss_conf 998458999999589889--99999987648983299823 No 275 >3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} Probab=32.96 E-value=21 Score=14.60 Aligned_cols=39 Identities=26% Similarity=0.450 Sum_probs=24.5 Q ss_pred HHHHHCCCCCCCEEEE--ECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 9986100128886898--51177657999986630134631111 Q gi|254780767|r 79 QTVELIVSSKPDVLLI--VDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 79 ~~~~~i~~~~Pd~vi~--iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) +..+.+.+.+||.+|+ +|...+. ...++++++ |||++.+ T Consensus 56 ~~i~~li~~~~dgIii~~~~~~~~~-~~l~~a~~~--gIpvv~~ 96 (289) T 3brs_A 56 ELIEEAIKRKPDVILLAAADYEKTY-DAAKEIKDA--GIKLIVI 96 (289) T ss_dssp HHHHHHHHTCCSEEEECCSCTTTTH-HHHTTTGGG--TCEEEEE T ss_pred HHHHHHHHCCCCEEEEECCCHHHHH-HHHHHHHHC--CCCEEEE T ss_conf 9999999769999999688415369-999999975--9987999 No 276 >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Ralstonia solanacearum MOLK2} Probab=32.71 E-value=21 Score=14.57 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=34.4 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC--HHHHHCCCEEEEC Q ss_conf 98745999976821478999999999973899839999717--8999478806504 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG--PSLQKEGLVSLFD 54 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG--~~m~~~G~~~~~~ 54 (383) |+-+||.|+-+..=|=.+|+.|.+ . +.++.++.-+- +.+++.|++..-+ T Consensus 1 m~m~KI~IiGaGaiG~~~A~~L~~----~-G~~Vtlv~R~~~~~~i~~~Gl~i~~~ 51 (335) T 3ghy_A 1 MSLTRICIVGAGAVGGYLGARLAL----A-GEAINVLARGATLQALQTAGLRLTED 51 (335) T ss_dssp -CCCCEEEESCCHHHHHHHHHHHH----T-TCCEEEECCHHHHHHHHHTCEEEEET T ss_pred CCCCEEEEECCCHHHHHHHHHHHH----C-CCCEEEEEEHHHHHHHHHCCCEEECC T ss_conf 998889998877999999999996----8-99089997589999999879099359 No 277 >3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, protein structure initiative; 2.40A {Rhodospirillum rubrum atcc 11170} Probab=32.61 E-value=21 Score=14.56 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=20.8 Q ss_pred HCCCCCCCEEEE-ECHHHHH-HHHHHHHHHH--CCCCCCEEE Q ss_conf 100128886898-5117765-7999986630--134631111 Q gi|254780767|r 83 LIVSSKPDVLLI-VDNPDFT-HRVAKRVRKK--MPNLPIINY 120 (383) Q Consensus 83 ~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~--~~~ipvi~y 120 (383) .+...+||++|+ +.-|+.| +.+.+.+|+. ...+|+|-. T Consensus 54 ~~~~~~~dlIilD~~mP~~dG~el~~~ir~~~~~~~iPvI~l 95 (152) T 3heb_A 54 RVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVIL 95 (152) T ss_dssp GGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEE T ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEE T ss_conf 665069998998689999988999999984877799958999 No 278 >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: TRP; 2.50A {Thermotoga maritima} Probab=32.22 E-value=18 Score=14.98 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=20.0 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHH Q ss_conf 9874599997682147899999999997 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKE 28 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~ 28 (383) |+.|||| +.=+|||++|-++++-.+++ T Consensus 10 ~~~~ri~-tG~~PTG~lHlG~~i~~i~~ 36 (340) T 2g36_A 10 HHHMRIL-SGMRPTGKLHIGHLVGALEN 36 (340) T ss_dssp --CCEEE-EEECCCSSCBHHHHHTHHHH T ss_pred CCCCEEE-ECCCCCCCCHHHHHHHHHHH T ss_conf 5445366-56188971458878999999 No 279 >3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} Probab=32.07 E-value=22 Score=14.50 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=24.0 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9874599997682147899999999997389983999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLV 37 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~ 37 (383) |++ ||+++.|-+.-+-....+++++.+..+.+.++. T Consensus 1 Msk-KIl~i~GS~R~~s~t~~la~~~~~~l~~~~ev~ 36 (192) T 3fvw_A 1 MSK-RILFIVGSFSEGSFNRQLAKKAETIIGDRAQVS 36 (192) T ss_dssp --C-EEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEE T ss_pred CCC-EEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEE T ss_conf 998-499998999999879999999998757997799 No 280 >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthesis, methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Probab=31.72 E-value=22 Score=14.46 Aligned_cols=32 Identities=13% Similarity=0.393 Sum_probs=23.0 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 4599997682147899999999997389983999971 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |||+|..| || ..|+.|++.|.++ + ..+++++- T Consensus 1 MKILVTG~--sG-fIGs~lv~~Ll~~-g-~~~V~~ld 32 (345) T 2bll_A 1 MRVLILGV--NG-FIGNHLTERLLRE-D-HYEVYGLD 32 (345) T ss_dssp CEEEEETC--SS-HHHHHHHHHHHHS-T-TCEEEEEE T ss_pred CEEEEECC--CC-HHHHHHHHHHHHC-C-CCEEEEEE T ss_conf 97999898--87-8999999999977-9-98899995 No 281 >1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A Probab=31.72 E-value=22 Score=14.46 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=33.2 Q ss_pred HHHHHHHHHHHHHHHHHH----HHHCCCCCCCEEEEECHHHHHHH--HHHHHHHHCCCCCCEEE Q ss_conf 367466459999999999----86100128886898511776579--99986630134631111 Q gi|254780767|r 63 IMQVVRHLPQFIFRINQT----VELIVSSKPDVLLIVDNPDFTHR--VAKRVRKKMPNLPIINY 120 (383) Q Consensus 63 ~~evl~~~~~~~~~~~~~----~~~i~~~~Pd~vi~iD~pgFnl~--lak~lkk~~~~ipvi~y 120 (383) +..++.+-..+....+.+ .+.....++|.|+++++-||-+- +|..+ ++|.++. T Consensus 30 it~ll~dp~~~~~i~~~la~~l~e~~~~~~~D~Vvg~e~~Gi~la~~lA~~L-----~~p~v~~ 88 (187) T 1g2q_A 30 FLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALAL-----GVGFVPV 88 (187) T ss_dssp CHHHHHSHHHHHHHHHHHHHHHHHHCTTSCCCEEEEETTTHHHHHHHHHHHH-----TCEEEEE T ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH-----CCCEEEE T ss_conf 8246549999999999999999986176798799983457535589999986-----9984899 No 282 >2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosphatase, mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Probab=31.17 E-value=15 Score=15.48 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=19.8 Q ss_pred HHHCCCCCCCEEEEECHHHH--------HHHHHHHHHHHCCCCCCEEE Q ss_conf 86100128886898511776--------57999986630134631111 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDF--------THRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgF--------nl~lak~lkk~~~~ipvi~y 120 (383) ...+...+||+||-==..|. +=-++..+-....|||=|=+ T Consensus 77 l~~l~~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GipsIAv 124 (254) T 2v4n_A 77 VNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAV 124 (254) T ss_dssp HHTTSSSCCSEEEEEEEESCCCGGGGGGCHHHHHHHTTTTSSSCEEEE T ss_pred HCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE T ss_conf 420057999989979738974773623118899999999749983489 No 283 >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Probab=31.10 E-value=22 Score=14.40 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=22.8 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9874599997682147899999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |++-||.+.+-|--++-.|.+++..+-+..+ .++.-+| T Consensus 1 ~~k~kVvi~~~~~D~H~lG~~~va~~l~~~G--~~V~~LG 38 (137) T 1ccw_A 1 MEKKTIVLGVIGSDCHAVGNKILDHAFTNAG--FNVVNIG 38 (137) T ss_dssp CCCCEEEEEEETTCCCCHHHHHHHHHHHHTT--CEEEEEE T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCC--CEEEECC T ss_conf 9998799994698745899999999999879--8799778 No 284 >3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, alter splicing, cell junction, cell membrane, endoplasmic reticul glycoprotein; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 2wjw_A* 2wjx_A Probab=31.06 E-value=22 Score=14.39 Aligned_cols=33 Identities=6% Similarity=-0.021 Sum_probs=26.1 Q ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 12888689851177657999986630134631111 Q gi|254780767|r 86 SSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 86 ~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) +.+.+++|+=-+.+....++..+... ++|.+-| T Consensus 58 ~~~v~aiiGp~~s~~~~~~~~~~~~~--~ip~is~ 90 (376) T 3hsy_A 58 SRGVYAIFGFYDKKSVNTITSFCGTL--HVSFITP 90 (376) T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHH--TCEEEEC T ss_pred HCCCEEEECCCCCHHHHHHHHHHHHC--CCCCCCC T ss_conf 75986999999818899999998633--6643345 No 285 >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha JMP134} Probab=30.99 E-value=22 Score=14.39 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=31.4 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH---HHHCCCEEEE Q ss_conf 9874599997682147899999999997389983999971789---9947880650 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPS---LQKEGLVSLF 53 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~---m~~~G~~~~~ 53 (383) |+.|||.|+-+.+=|=.+|+.|-+ . +.++.++.= |++ .++.|+.... T Consensus 17 ~~~MkI~IlGaGaiGt~~A~~L~~----a-G~dV~li~R-~~~~~~i~~~Gl~l~~ 66 (318) T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLAR----A-GHEVILIAR-PQHVQAIEATGLRLET 66 (318) T ss_dssp ---CEEEEESCSHHHHHHHHHHHH----T-TCEEEEECC-HHHHHHHHHHCEEEEC T ss_pred HCCCEEEEECCCHHHHHHHHHHHH----C-CCCEEEEEC-HHHHHHHHHCCEEEEC T ss_conf 169989999907999999999984----7-990899983-8999999977969946 No 286 >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Vibrio parahaemolyticus AQ3810} Probab=30.91 E-value=23 Score=14.38 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=28.2 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH Q ss_conf 4599997682147899999999997389983999971789994 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQK 46 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~ 46 (383) ||+-+++|-.|| .|..+.+.|-++ +.++-+.+.-.+++++ T Consensus 1 MkiVlITGassG--IG~a~A~~la~~-G~~V~l~~R~~~~l~~ 40 (230) T 3guy_A 1 MSLIVITGASSG--LGAELAKLYDAE-GKATYLTGRSESKLST 40 (230) T ss_dssp --CEEEESTTSH--HHHHHHHHHHHT-TCCEEEEESCHHHHHH T ss_pred CCEEEEECCCCH--HHHHHHHHHHHC-CCEEEEEECCHHHHHH T ss_conf 999999187719--999999999987-9989999899999999 No 287 >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Probab=30.87 E-value=22 Score=14.45 Aligned_cols=27 Identities=7% Similarity=-0.117 Sum_probs=13.0 Q ss_pred CCCCEEEEHHHCCCCCCCHHHCC-CCCHH Q ss_conf 67610230244078426124205-48989 Q gi|254780767|r 307 KTWTCALPNLIVDYPLVPEYFNS-MIRSE 334 (383) Q Consensus 307 k~~~i~LpNii~~~~ivPEliQ~-~~~~~ 334 (383) ...|+|+|=+|-.+.+ -+.++- .++++ T Consensus 268 ~~~~~s~P~~ig~~Gv-~~ivel~~L~~~ 295 (326) T 1smk_A 268 ELPFFASKVRLGRNGI-EEVYSLGPLNEY 295 (326) T ss_dssp SSSEEEEEEEEETTEE-EEECCCCCCCHH T ss_pred CCEEEEEEEEECCCEE-EEECCCCCCCHH T ss_conf 5279999819948933-998348999999 No 288 >2chu_A CEUE, enterochelin uptake periplasmic binding protein; iron, mecam, SELF assembly, siderophore; HET: ECA; 2.40A {Campylobacter jejuni} SCOP: c.92.2.4 Probab=30.77 E-value=23 Score=14.36 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=19.1 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHH Q ss_conf 8610012888689851177657999986630 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKK 111 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~ 111 (383) .+.|..-+||+||.-+ ++-.....+++. T Consensus 88 ~E~i~~l~PDlii~~~---~~~~~~~~l~~~ 115 (296) T 2chu_A 88 FEAINALKPDLIIISG---RQSKFYDKLKEI 115 (296) T ss_dssp HHHHHHTCCSEEEECT---TTGGGHHHHHTT T ss_pred HHHHHHCCCCEEEECC---CCHHHHHHHHHH T ss_conf 9999706998599458---646899999952 No 289 >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} SCOP: c.2.1.2 Probab=30.68 E-value=23 Score=14.35 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=17.7 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 59999768214789999999999738998399997 Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV 39 (383) Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi 39 (383) |+.+++|-.|| .|..+.+.|-+. +.++-+.+. T Consensus 22 KvalITGas~G--IG~aiA~~la~~-Ga~V~i~~r 53 (267) T 1vl8_A 22 RVALVTGGSRG--LGFGIAQGLAEA-GCSVVVASR 53 (267) T ss_dssp CEEEEETTTSH--HHHHHHHHHHHT-TCEEEEEES T ss_pred CEEEEECCCCH--HHHHHHHHHHHC-CCEEEEEEC T ss_conf 98999489878--999999999987-998999979 No 290 >1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A* Probab=30.61 E-value=23 Score=14.34 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHHHCCC--CCCCEEEEECHHHHHHH--HHHHHHHHCCCCCCEEE Q ss_conf 9999999999861001--28886898511776579--99986630134631111 Q gi|254780767|r 71 PQFIFRINQTVELIVS--SKPDVLLIVDNPDFTHR--VAKRVRKKMPNLPIINY 120 (383) Q Consensus 71 ~~~~~~~~~~~~~i~~--~~Pd~vi~iD~pgFnl~--lak~lkk~~~~ipvi~y 120 (383) -.+....+.+.+.++. .+||.|+++++-||=+- +|..+ |+|.++. T Consensus 52 ~~~~~i~~~l~~~~k~~~~~~D~Ivgie~~Gi~~A~~lA~~L-----g~p~v~v 100 (236) T 1qb7_A 52 ETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVEL-----EIPFVLM 100 (236) T ss_dssp HHHHHHHHHHHHHHHHCSSCCSEEEEETTGGGGTHHHHHHHH-----TCCEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHH-----HCCEEEE T ss_conf 999999999999998548999899966446589899999986-----3476886 No 291 >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Probab=30.19 E-value=23 Score=14.30 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=46.7 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383) |||-|+.-..= |..+.+.|++ + ++++.++....-+ ..+...++ +. T Consensus 1 MkVgIIG~G~i----G~~v~~~l~~--~-~~el~~v~d~~~~--~~~~~~~~--------------------------de 45 (236) T 2dc1_A 1 MLVGLIGYGAI----GKFLAEWLER--N-GFEIAAILDVRGE--HEKMVRGI--------------------------DE 45 (236) T ss_dssp CEEEEECCSHH----HHHHHHHHHH--T-TCEEEEEECSSCC--CTTEESSH--------------------------HH T ss_pred CEEEEECCCHH----HHHHHHHHHH--C-CCEEEEEEECCCC--CCCCCCCH--------------------------HH T ss_conf 97999958889----9999999971--9-9889999967850--22444899--------------------------99 Q ss_pred CCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 00128886898511776579999866301346311 Q gi|254780767|r 84 IVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 84 i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) +...+||+||-.-.|+.....++++=++ |++++ T Consensus 46 ~l~~~~DvVie~a~~~a~~e~a~~~L~~--G~~vv 78 (236) T 2dc1_A 46 FLQREMDVAVEAASQQAVKDYAEKILKA--GIDLI 78 (236) T ss_dssp HTTSCCSEEEECSCHHHHHHHHHHHHHT--TCEEE T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHC--CCCEE T ss_conf 9438887899906974047999999973--99799 No 292 >3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Probab=29.69 E-value=24 Score=14.24 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=21.9 Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 610012888689851177657999986630134631111 Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) +.+.+.+..++.. .+.+.++.++..+.+. +||++.. T Consensus 69 ~lv~~~~v~vi~~-~~S~~~~a~~~~~~~~--~ip~i~~ 104 (392) T 3lkb_A 69 EAVDRFKIPVFLS-YATGANLQLKPLIQEL--RIPTIPA 104 (392) T ss_dssp HHHHTTCCSCEEE-CCHHHHHHHHHHHHHH--TCCEEES T ss_pred HHHHCCCCEEEEC-CCCHHHHHHHHHHHHC--CCEEECC T ss_conf 9986699569808-9858899988888764--9238724 No 293 >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Probab=29.64 E-value=24 Score=14.24 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=23.5 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9874599997682147899999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |+.|||+|. | .||- .|..++++|.++ +.++.++. T Consensus 19 ~~~MkIlI~-G-asG~-iG~~lv~~Ll~~---g~~V~~l~ 52 (236) T 3e8x_A 19 FQGMRVLVV-G-ANGK-VARYLLSELKNK---GHEPVAMV 52 (236) T ss_dssp --CCEEEEE-T-TTSH-HHHHHHHHHHHT---TCEEEEEE T ss_pred CCCCEEEEE-C-CCCH-HHHHHHHHHHHC---CCEEEEEE T ss_conf 799908999-9-9888-999999999978---59899998 No 294 >3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A Probab=29.52 E-value=6.3 Score=18.04 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=32.2 Q ss_pred CCCCCCCEEEEECHHHHHH---HHHHHHHHHCCCCCCEEEECCCCCCCCCCC Q ss_conf 0012888689851177657---999986630134631111002211003663 Q gi|254780767|r 84 IVSSKPDVLLIVDNPDFTH---RVAKRVRKKMPNLPIINYVCPSVWAWREGR 132 (383) Q Consensus 84 i~~~~Pd~vi~iD~pgFnl---~lak~lkk~~~~ipvi~yv~PqvWAWr~~R 132 (383) ....+..+||.|++-|+.- ++.+.+++. |+++|-=.|-...|.-.++ T Consensus 154 ~it~ktkaIi~vh~~G~~~d~~~i~~ia~~~--~i~vIEDaA~a~ga~~~g~ 203 (437) T 3bb8_A 154 AVSDKTKAIMIAHTLGNLFDLAEVRRVADKY--NLWLIEDCCDALGSTYDGK 203 (437) T ss_dssp HCCTTEEEEEEECGGGCCCCHHHHHHHHHHH--TCEEEEECTTCTTCEETTE T ss_pred HHCCCCCEEEEECCCCCCCCHHHHHHHHHHC--CCCEEECCHHHHCCEECCE T ss_conf 7246973899845777633348999999985--9817825615316726988 No 295 >1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Probab=29.48 E-value=21 Score=14.55 Aligned_cols=87 Identities=11% Similarity=0.149 Sum_probs=43.8 Q ss_pred EHHHHHHHHHHHHHH-------------HHHHHHHCCCCCCCEEEEECH-----------HHHHHHHHHHH-HHHCCCC- Q ss_conf 136746645999999-------------999986100128886898511-----------77657999986-6301346- Q gi|254780767|r 62 GIMQVVRHLPQFIFR-------------INQTVELIVSSKPDVLLIVDN-----------PDFTHRVAKRV-RKKMPNL- 115 (383) Q Consensus 62 G~~evl~~~~~~~~~-------------~~~~~~~i~~~~Pd~vi~iD~-----------pgFnl~lak~l-kk~~~~i- 115 (383) ++.|+..+|..+++. +.++.+-.-....|++|.-|. -|.-+.++|.+ -+..-|| T Consensus 95 tVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~~iVVTDG~rILGLGD~G~~gm~I~~GKl~Ly~~~gGI~ 174 (564) T 1pj3_A 95 TVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIR 174 (564) T ss_dssp HHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHHHHHHHHHHHCCC T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCC T ss_conf 16999999887521777048602665569999970774572299996671021066789884333100567766407877 Q ss_pred -----CCEEEE---------CCCCCCCCCCCHH--H----HHHHHHHHCCCCC Q ss_conf -----311110---------0221100366355--7----9999986401567 Q gi|254780767|r 116 -----PIINYV---------CPSVWAWREGRAR--K----MCAYINQVISILP 148 (383) Q Consensus 116 -----pvi~yv---------~PqvWAWr~~R~k--~----~~~~~d~~~~ifp 148 (383) |++-=+ -|..--||..|++ . +.+++..+...|| T Consensus 175 P~~~lPi~LDvGTnN~~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~f~ 227 (564) T 1pj3_A 175 PDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYG 227 (564) T ss_dssp GGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHC T ss_pred HHHCCCEEEECCCCHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 66545557405777175503822203344556620389999999999998559 No 296 >1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Probab=29.47 E-value=24 Score=14.22 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=14.7 Q ss_pred HHHHHHHHHCCCEEEECCCC Q ss_conf 56688876275302540577 Q gi|254780767|r 277 TVILELALCGIPVVSIYKSE 296 (383) Q Consensus 277 TaTLE~al~g~P~IV~Yk~~ 296 (383) +|-.|+..+++|+|-+-.++ T Consensus 129 ~ai~Ea~~l~IP~I~ivDTn 148 (208) T 1vi6_A 129 QAVSEATAVGIPVVALCDSN 148 (208) T ss_dssp HHHHHHHHTTCCEEEEECTT T ss_pred HHHHHHHHCCCCEEEEECCC T ss_conf 99999998099658872499 No 297 >3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae PV} Probab=29.37 E-value=20 Score=14.72 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=13.8 Q ss_pred CCCCCEEEEECHHHHHHH-HHHHHHH Q ss_conf 128886898511776579-9998663 Q gi|254780767|r 86 SSKPDVLLIVDNPDFTHR-VAKRVRK 110 (383) Q Consensus 86 ~~~Pd~vi~iD~pgFnl~-lak~lkk 110 (383) +.+|.++|+|--.|-||. |..+.+. T Consensus 103 ~~~~riaIlvS~~g~~l~~ll~~~~~ 128 (302) T 3o1l_A 103 AQKKRVVLMASRESHCLADLLHRWHS 128 (302) T ss_dssp TSCCEEEEEECSCCHHHHHHHHHHHT T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHC T ss_conf 66836999981898439999999877 No 298 >3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure initiative; HET: MSE; 2.15A {Enterococcus faecalis} Probab=29.15 E-value=22 Score=14.42 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=17.4 Q ss_pred HHHHHHHHHHHC-------CCHHHHHHHH---HHCCCEEEECCCC Q ss_conf 357887635523-------3115668887---6275302540577 Q gi|254780767|r 262 KQVFMTCNAAMA-------ASGTVILELA---LCGIPVVSIYKSE 296 (383) Q Consensus 262 ~~~l~~sd~ai~-------~SGTaTLE~a---l~g~P~IV~Yk~~ 296 (383) ...+..||+.|+ -|||+- |+. .+|+| |++|.+. T Consensus 64 ~~~l~~aD~via~ldg~~~D~GT~~-EiG~A~algkp-vi~~~~D 106 (162) T 3ehd_A 64 TENVLASDLLVALLDGPTIDAGVAS-EIGVAYAKGIP-VVALYTD 106 (162) T ss_dssp HHHHHTCSEEEEECCSSSCCHHHHH-HHHHHHHTTCC-EEEECCC T ss_pred HHHHHHCCEEEEECCCCCCCCCHHH-HHHHHHHCCCE-EEEEECC T ss_conf 9999869999998489999988899-99999986995-9999635 No 299 >1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A* Probab=28.91 E-value=24 Score=14.16 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=29.1 Q ss_pred HHHHH-HHHHHHHHCCCCCCCEEEEECHHHHHHH--HHHHHHHHCCCCCCEEE Q ss_conf 99999-9999986100128886898511776579--99986630134631111 Q gi|254780767|r 71 PQFIF-RINQTVELIVSSKPDVLLIVDNPDFTHR--VAKRVRKKMPNLPIINY 120 (383) Q Consensus 71 ~~~~~-~~~~~~~~i~~~~Pd~vi~iD~pgFnl~--lak~lkk~~~~ipvi~y 120 (383) |.+.+ .-+.+.+.+...++|+|++++.-|+-+- +|..| |+|.++. T Consensus 112 P~~l~~lG~~lA~~~~~~~iD~Vvgv~~~GiplA~~vA~~L-----gvP~v~~ 159 (291) T 1o57_A 112 PSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYL-----NVPVVIV 159 (291) T ss_dssp HHHHHHHHHHHHHHTTTSCCSEEEEETTTTHHHHHHHHHHH-----TCCEEEE T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHH-----CCCEEEE T ss_conf 99999999999997377899799931756699999999996-----9997999 No 300 >1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2 Probab=28.74 E-value=19 Score=14.92 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=7.0 Q ss_pred CCCCCCEEEEECH Q ss_conf 0128886898511 Q gi|254780767|r 85 VSSKPDVLLIVDN 97 (383) Q Consensus 85 ~~~~Pd~vi~iD~ 97 (383) .+.+||+||.||+ T Consensus 183 ~~~kPDlVIaIDA 195 (371) T 1c8b_A 183 KKVNPDFIIAIDA 195 (371) T ss_dssp HHHCCSEEEEEEE T ss_pred HHHCCCEEEEECH T ss_conf 7528999999422 No 301 >2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C, DOXP/MEP pathway, oxidoreductase, isoprene biosynthesis, metal-binding; 1.9A {Mycobacterium tuberculosis} PDB: 2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A* Probab=28.61 E-value=25 Score=14.12 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=19.2 Q ss_pred CCCCCCCHHHCCCCCHHHHHHHHHHHHC Q ss_conf 0784261242054898999999999844 Q gi|254780767|r 318 VDYPLVPEYFNSMIRSEALVRWIERLSQ 345 (383) Q Consensus 318 ~~~~ivPEliQ~~~~~~~i~~~~~~ll~ 345 (383) +|+..|--|++++..--.|.+-+.+.++ T Consensus 329 ANEvAV~~FL~~kI~F~dI~~iI~~vL~ 356 (413) T 2c82_A 329 ANEEAAAAFLAGRIGFPAIVGIIADVLH 356 (413) T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 9799999999589986789999999998 No 302 >3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} Probab=28.38 E-value=17 Score=15.17 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=4.5 Q ss_pred HHHHHHCCCCCEE Q ss_conf 9876402735126 Q gi|254780767|r 217 VASLVKRNPFFRF 229 (383) Q Consensus 217 ~~~l~~~~~~~~~ 229 (383) ++.+.+.+|+.++ T Consensus 98 ~~~~~e~~~~~~I 110 (278) T 3fdj_A 98 RAVYLEEHPQAKV 110 (278) T ss_dssp HHHHHTTCTTCEE T ss_pred HHHHHHHCCCCEE T ss_conf 9988866799749 No 303 >1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A* Probab=28.23 E-value=25 Score=14.08 Aligned_cols=98 Identities=16% Similarity=0.331 Sum_probs=59.5 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383) |||.|-=-...| =.+.++|++..| +.++..+|...=-..|-++. | .+.+...+..++ T Consensus 1 mkIgvfDSGiGG----ltv~~~l~~~~p-~~~~iy~~D~~~~PYG~ks~------------e------~i~~~~~~~~~~ 57 (254) T 1b73_A 1 MKIGIFDSGVGG----LTVLKAIRNRYR-KVDIVYLGDTARVPYGIRSK------------D------TIIRYSLECAGF 57 (254) T ss_dssp CEEEEEESSSGG----GTHHHHHHHHST-TCEEEEEECTTTCCCTTSCH------------H------HHHHHHHHHHHH T ss_pred CEEEEEECCCCH----HHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCH------------H------HHHHHHHHHHHH T ss_conf 979999489867----999999999789-99889994688899998999------------9------999999999999 Q ss_pred CCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC Q ss_conf 001288868985-11776579999866301346311110022110 Q gi|254780767|r 84 IVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPIINYVCPSVWA 127 (383) Q Consensus 84 i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi~yv~PqvWA 127 (383) +.+.++|++|.- -..... ....+++. +.+|+++.+.|.+.+ T Consensus 58 L~~~~~~~IviaCNTa~a~--~~~~l~~~-~~ipvi~ii~~~~~~ 99 (254) T 1b73_A 58 LKDKGVDIIVVACNTASAY--ALERLKKE-INVPVFGVIEPGVKE 99 (254) T ss_dssp HHTTTCSEEEECCHHHHTT--SHHHHHHH-SSSCEEESHHHHHHH T ss_pred HHHCCCCEEEEECCCHHHH--HHHHHHHH-CCCCEEECCCHHHHH T ss_conf 9976999999937857899--99999986-379876056287999 No 304 >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Probab=28.05 E-value=25 Score=14.06 Aligned_cols=37 Identities=8% Similarity=0.272 Sum_probs=26.6 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9874599997682147899999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |++||=-+++|-.. ..|+.|++.|.++ +.++++.++. T Consensus 1 m~~~k~ILITG~tG--fiG~~l~~~Ll~~-g~~v~v~~~d 37 (348) T 1oc2_A 1 MSQFKNIIVTGGAG--FIGSNFVHYVYNN-HPDVHVTVLD 37 (348) T ss_dssp --CCSEEEEETTTS--HHHHHHHHHHHHH-CTTCEEEEEE T ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHHC-CCCEEEEEEE T ss_conf 99998899947886--8999999999977-9973999983 No 305 >1wb0_A Chitinase 1, chitotriosidase 1; hydrolase, human chitinase, argadin, cyclopentapeptide inhibitors, chitinase inhibitors, alternative splicing; HET: RAG; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Probab=27.98 E-value=25 Score=14.05 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=82.8 Q ss_pred HHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 789999999999738998399-9971789994788065044453110136746645999999999986100128886898 Q gi|254780767|r 16 DLLAGDLIKSLKEMVSYPINL-VGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI 94 (383) Q Consensus 16 D~~~a~li~~Lk~~~~~~~~~-~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~ 94 (383) |...-.-+.+||++ ++++++ ..|||-... .-+|.+++..--.-.+..+.+++.+++++.|-|-+ T Consensus 52 d~~~~~~~~~Lk~~-np~lKvllsiGGw~~~--------------s~~Fs~~a~~~~~R~~Fi~s~v~~l~~~~fDGiDi 116 (445) T 1wb0_A 52 DETLYQEFNGLKKM-NPKLKTLLAIGGWNFG--------------TQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116 (445) T ss_dssp HHHHHHHHHHGGGT-CTTCEEEEEEECTTTC--------------SHHHHHHHTSHHHHHHHHHHHHHHHHHTTCCEEEE T ss_pred CHHHHHHHHHHHHH-CCCCEEEEEEECCCCC--------------CCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 18899999999986-8997699999389778--------------70687886699999999999999999829983772 Q ss_pred -E-----------CHHHHHHHHHHHHHHHC------CCCC---CEEEECCCCCCCC-CCCHHHHHHHHHHHCCCCCCCHH Q ss_conf -5-----------11776579999866301------3463---1111002211003-66355799999864015677422 Q gi|254780767|r 95 -V-----------DNPDFTHRVAKRVRKKM------PNLP---IINYVCPSVWAWR-EGRARKMCAYINQVISILPFEKE 152 (383) Q Consensus 95 -i-----------D~pgFnl~lak~lkk~~------~~ip---vi~yv~PqvWAWr-~~R~k~~~~~~d~~~~ifpFE~~ 152 (383) - |...|.. +-+.+|... .+.+ +.--+++.-|-+. ...++.+.+++|.+-..- T Consensus 117 DWEyP~~~g~~~~D~~nf~~-ll~elr~~l~~~~~~~~~~~~~ls~avp~~~~~~~~~yd~~~i~~~vD~invMt----- 190 (445) T 1wb0_A 117 DWEYPGSQGSPAVDKERFTT-LVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMA----- 190 (445) T ss_dssp ECSCTTSTTCCTTHHHHHHH-HHHHHHHHHHHHHHHHCSCCCEEEEEECCCHHHHHHHCCHHHHHHHCSEEEECC----- T ss_pred CCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCHHHHHHHCCEEEEEE----- T ss_conf 25135446888015677999-999999999998876177762278870587177662131454432146578986----- Q ss_pred HHHCCCCCCEEECCC--CCCCCCCC--------CCCHHHHHHHCCCCCCCCEEEE Q ss_conf 320025531476388--21122100--------1355888976187655650599 Q gi|254780767|r 153 VMQRLGGPPTTFVGH--PLSSSPSI--------LEVYSQRNKQRNTPSQWKKILL 197 (383) Q Consensus 153 ~f~k~~~~~~~fVGH--Pl~d~~~~--------~~~~~~~~~~~~~~~~~~~I~l 197 (383) |+ ++|.-..++|| ||...... ....-......+.++++-++++ T Consensus 191 -YD-~~g~w~~~tg~~spLy~~~~~~~~~~~~~v~~~v~~~~~~G~p~~KlvlGi 243 (445) T 1wb0_A 191 -YD-FHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGM 243 (445) T ss_dssp -CC-SSCTTSSBCCCSSCSSCCTTCCGGGGGCSHHHHHHHHHHTTCCGGGEEEEE T ss_pred -EC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEE T ss_conf -31-467777778888867788555687777558488899997499832479987 No 306 >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Probab=27.87 E-value=25 Score=14.04 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=23.7 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 599997682147899999999997389983999971 Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |+.+++|-.|| .|..+.+.|-+. + .++...+ T Consensus 6 K~~lVTG~s~G--IG~aia~~la~~-G--a~V~~~~ 36 (245) T 1uls_A 6 KAVLITGAAHG--IGRATLELFAKE-G--ARLVACD 36 (245) T ss_dssp CEEEEESTTSH--HHHHHHHHHHHT-T--CEEEEEE T ss_pred CEEEEECCCCH--HHHHHHHHHHHC-C--CEEEEEE T ss_conf 89999377878--999999999987-9--9999997 No 307 >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Probab=27.85 E-value=25 Score=14.04 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=5.6 Q ss_pred HHHHHHHHHHCCHH Q ss_conf 99999999844989 Q gi|254780767|r 335 ALVRWIERLSQDTL 348 (383) Q Consensus 335 ~i~~~~~~ll~d~~ 348 (383) .+...+.++-.+++ T Consensus 429 dl~~~~~e~~~~~~ 442 (497) T 3mc6_A 429 ILRTTVQELKSESN 442 (497) T ss_dssp HHHHHHHHHTCC-- T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999983747 No 308 >1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Probab=27.63 E-value=26 Score=14.01 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=51.2 Q ss_pred HHHHHHHHHHHHHHCCC-CEEEEEECCHHHH-------HCCCEEEECH--HHCCEEEHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 78999999999973899-8399997178999-------4788065044--453110136746645999999999986100 Q gi|254780767|r 16 DLLAGDLIKSLKEMVSY-PINLVGVGGPSLQ-------KEGLVSLFDF--SELSVIGIMQVVRHLPQFIFRINQTVELIV 85 (383) Q Consensus 16 D~~~a~li~~Lk~~~~~-~~~~~giGG~~m~-------~~G~~~~~~~--~~l~v~G~~evl~~~~~~~~~~~~~~~~i~ 85 (383) |.+|-...-.||++.+. .+....+|++.-+ +-|.+.-+.+ .+...-|. +.+. .-+ -+...++ T Consensus 39 D~~AlE~Al~lke~~~g~~V~v~s~G~~~~~~~lr~alamGad~a~~i~~~~~~~~~~-d~~~----ta~---~la~~~~ 110 (252) T 1efp_B 39 DEIAVEEAIRLKEKGQAEEIIAVSIGVKQAAETLRTALAMGADRAILVVAADDVQQDI-EPLA----VAK---ILAAVAR 110 (252) T ss_dssp HHHHHHHHHHHHTTTSCSEEEEEEEESGGGHHHHHHHHHHTCSEEEEEECCSSTTCCC-CHHH----HHH---HHHHHHH T ss_pred CHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CHHH----HHH---HHHHHHH T ss_conf 6999999999754279809999996637879999988623798269999245346677-8999----999---9999987 Q ss_pred CCCCCEEEE----ECHH--HHHHHHHHHHHHHCCCCCCEEEEC Q ss_conf 128886898----5117--765799998663013463111100 Q gi|254780767|r 86 SSKPDVLLI----VDNP--DFTHRVAKRVRKKMPNLPIINYVC 122 (383) Q Consensus 86 ~~~Pd~vi~----iD~p--gFnl~lak~lkk~~~~ipvi~yv~ 122 (383) ...||+|++ +|.- -.--.+|.+| |+|.+-||. T Consensus 111 ~~~~DLIl~G~~s~D~~~g~vg~~lAe~L-----g~P~vt~v~ 148 (252) T 1efp_B 111 AEGTELIIAGKQAIDNDMNATGQMLAAIL-----GWAQATFAS 148 (252) T ss_dssp HHTCSEEEEESCCTTTCCCCHHHHHHHHH-----TCEEEEEEE T ss_pred HCCCCEEEEEEECCCCCCCCCCHHHHHHC-----CCCCEEEEE T ss_conf 41999999983256678884216889762-----898135789 No 309 >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Probab=27.57 E-value=21 Score=14.55 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=4.6 Q ss_pred HHHHHHHHHHHH Q ss_conf 765799998663 Q gi|254780767|r 99 DFTHRVAKRVRK 110 (383) Q Consensus 99 gFnl~lak~lkk 110 (383) ||.-.+.|.+.+ T Consensus 143 ~~gr~~rkav~~ 154 (538) T 1yvr_A 143 MWGRALRKAVSD 154 (538) T ss_dssp -CCHHHHHHHHH T ss_pred CCCHHHHHHHHH T ss_conf 523899999999 No 310 >2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* Probab=27.48 E-value=26 Score=14.00 Aligned_cols=84 Identities=18% Similarity=0.275 Sum_probs=47.2 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 459999768214789999999999738--998399997178999478806504445311013674664599999999998 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMV--SYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTV 81 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~--~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~ 81 (383) -||-++.= ...|-+-+.+.+.+++.. ..++++....+.. |. ....+.. T Consensus 3 ~kIgv~~~-~~~~~f~~~~~~g~~~~a~~~~~~~l~~~~~~~----------d~-------------------~~q~~~i 52 (309) T 2fvy_A 3 TRIGVTIY-KYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQN----------DQ-------------------SKQNDQI 52 (309) T ss_dssp EEEEEEES-CTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTT----------CH-------------------HHHHHHH T ss_pred CEEEEEEC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC----------CH-------------------HHHHHHH T ss_conf 88999978-998989999999999999876992899975999----------99-------------------9999999 Q ss_pred HHCCCCCCCEEEE--ECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 6100128886898--51177657999986630134631111 Q gi|254780767|r 82 ELIVSSKPDVLLI--VDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 82 ~~i~~~~Pd~vi~--iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) +.+...+||.+|+ +|...+. ...++++++ |||++.+ T Consensus 53 ~~~i~~~vD~iiv~~~d~~~~~-~~l~~a~~~--gipvv~~ 90 (309) T 2fvy_A 53 DVLLAKGVKALAINLVDPAAAG-TVIEKARGQ--NVPVVFF 90 (309) T ss_dssp HHHHHTTCSEEEECCSSGGGHH-HHHHHHHTT--TCCEEEE T ss_pred HHHHHCCCCEEEECCCCHHHHH-HHHHHHHHC--CCCEEEE T ss_conf 9999769999996674224159-999999986--9978996 No 311 >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Probab=27.30 E-value=14 Score=15.66 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=26.3 Q ss_pred CCCCCCEEEEECHHHHHH---HHHHHHHHHCCCCCCEEEECCCCCC Q ss_conf 012888689851177657---9999866301346311110022110 Q gi|254780767|r 85 VSSKPDVLLIVDNPDFTH---RVAKRVRKKMPNLPIINYVCPSVWA 127 (383) Q Consensus 85 ~~~~Pd~vi~iD~pgFnl---~lak~lkk~~~~ipvi~yv~PqvWA 127 (383) ...++++||.|..-|..- .|.+.+++. ++++|-=.|-..-+ T Consensus 125 i~~~tkaIi~vh~~G~~~d~~~I~~i~~~~--~i~vIEDaAqa~G~ 168 (390) T 3b8x_A 125 VTDSTKAILTVNLLGNPNNFDEINKIIGGR--DIILLEDNCESMGA 168 (390) T ss_dssp CCTTEEEEEEECGGGCCCCHHHHHHHHTTS--CCEEEEECTTCTTC T ss_pred HCCCCEEEEEECCCCCCCCHHHHHHHHHHC--CCEEECCCHHCCCC T ss_conf 424870533005678846789999999872--98577013014587 No 312 >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Probab=27.17 E-value=26 Score=13.96 Aligned_cols=36 Identities=6% Similarity=-0.028 Sum_probs=21.4 Q ss_pred CCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEEC Q ss_conf 128886898511776-5799998663013463111100 Q gi|254780767|r 86 SSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVC 122 (383) Q Consensus 86 ~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~ 122 (383) ..+|-++++.--||+ |+- ..-.-....++|++...+ T Consensus 66 tg~~~v~~~tsGpg~~N~~-~al~eA~~~~~Pll~It~ 102 (589) T 2pgn_A 66 KDRSAAVGAWHCVGNLLLH-AAMQEARTGRIPAVHIGL 102 (589) T ss_dssp HTSCCEEEEEEGGGGGGCH-HHHHHHHHTTCCEEEEEE T ss_pred HCCCEEEECCCCHHHHHHH-HHHHHHHHHCCCEEEEEC T ss_conf 6998899917788999999-999998664798899968 No 313 >3hdv_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.09A {Pseudomonas putida KT2440} Probab=27.05 E-value=25 Score=14.08 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=4.6 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 11776579999866 Q gi|254780767|r 96 DNPDFTHRVAKRVR 109 (383) Q Consensus 96 D~pgFnl~lak~lk 109 (383) |.|.+---+...++ T Consensus 15 D~~~~r~~l~~~L~ 28 (136) T 3hdv_A 15 DNAVNREALILYLK 28 (136) T ss_dssp SCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH T ss_conf 99999999999999 No 314 >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Probab=26.84 E-value=26 Score=13.92 Aligned_cols=42 Identities=14% Similarity=0.307 Sum_probs=24.2 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCC Q ss_conf 987459999768214789999999999738998399997178999478 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEG 48 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G 48 (383) |++|||+|+-.. |=-|| ++.+|++. +.. -+..-|-+.|+..+ T Consensus 13 ~~~~rVLviGsG--gREHA--ia~~l~~s-~~~-v~~~pgN~g~~~~~ 54 (412) T 1vkz_A 13 MKAVRVHILGSG--GREHA--IGWAFAKQ-GYE-VHFYPGNAGTKRDG 54 (412) T ss_dssp ---CEEEEEECS--HHHHH--HHHHHHHT-TCE-EEEEECCTTGGGTS T ss_pred HHCCEEEEECCC--HHHHH--HHHHHHCC-CCC-EEEECCCHHHHHHC T ss_conf 426789999978--89999--99998569-980-89968987887425 No 315 >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* 3jq7_A* 3jq8_A* ... Probab=26.75 E-value=27 Score=13.91 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=22.6 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 599997682147899999999997389983999971 Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |+.+++|-.|| .|..+.+.|-+. + .++...+ T Consensus 24 kvAlITGas~G--IG~aiA~~la~~-G--a~Vvi~~ 54 (288) T 2x9g_A 24 PAAVVTGAAKR--IGRAIAVKLHQT-G--YRVVIHY 54 (288) T ss_dssp CEEEETTCSSH--HHHHHHHHHHHH-T--CEEEEEE T ss_pred CEEEEECCCCH--HHHHHHHHHHHC-C--CEEEEEE T ss_conf 98999586878--999999999987-9--9899996 No 316 >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber dsm 13855} Probab=26.51 E-value=27 Score=13.88 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=18.6 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCC-CCEEEEEEC Q ss_conf 4599997682147899999999997389-983999971 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVS-YPINLVGVG 40 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~-~~~~~~giG 40 (383) |||-|+ | + |. .|+.+.-.|+...- .++-++-+- T Consensus 1 mKV~Ii-G-a-G~-VG~~~a~~l~~~~~~~el~L~Di~ 34 (314) T 3nep_X 1 MKVTVI-G-A-GN-VGATVAECVARQDVAKEVVMVDIK 34 (314) T ss_dssp CEEEEE-C-C-SH-HHHHHHHHHHHHTCSSEEEEECSS T ss_pred CEEEEE-C-C-CH-HHHHHHHHHHHCCCCCEEEEECCC T ss_conf 979999-9-6-98-999999999837999869997689 No 317 >2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} Probab=26.44 E-value=27 Score=13.87 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=49.2 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 87459999768214789999999999738998399997178999478806504445311013674664599999999998 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTV 81 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~ 81 (383) .|++|-++....+.+- -+.+.+.+++. .++.|.+..+-..+ .+. ....+.. T Consensus 1 ~p~~Ig~~~~~~~~~~-~~~~~~~~~~~--------------a~~~G~~~~~~~~~------~~~--------~~q~~~i 51 (306) T 2vk2_A 1 APLTVGFSQVGSESGW-RAAETNVAKSE--------------AEKRGITLKIADGQ------QKQ--------ENQIKAV 51 (306) T ss_dssp -CCEEEEEECCCCSHH-HHHHHHHHHHH--------------HHHHTCEEEEEECT------TCH--------HHHHHHH T ss_pred CCEEEEEEECCCCCHH-HHHHHHHHHHH--------------HHHCCCEEEEEECC------CCH--------HHHHHHH T ss_conf 9879999979998899-99999999999--------------99869989999599------999--------9999999 Q ss_pred HHCCCCCCCEEEEE--CHHHHHHHHHHHHHHHCCCCCCEEEECC Q ss_conf 61001288868985--1177657999986630134631111002 Q gi|254780767|r 82 ELIVSSKPDVLLIV--DNPDFTHRVAKRVRKKMPNLPIINYVCP 123 (383) Q Consensus 82 ~~i~~~~Pd~vi~i--D~pgFnl~lak~lkk~~~~ipvi~yv~P 123 (383) +.+.+.+||.+|++ |..... ...+++++. |||++.+-.+ T Consensus 52 ~~li~~~vDgIii~~~~~~~~~-~~i~~a~~~--gipvv~~d~~ 92 (306) T 2vk2_A 52 RSFVAQGVDAIFIAPVVATGWE-PVLKEAKDA--EIPVFLLDRS 92 (306) T ss_dssp HHHHHHTCSEEEECCSSSSSCH-HHHHHHHHT--TCCEEEESSC T ss_pred HHHHHCCCCEEEECCCCCHHHH-HHHHHHHHC--CCEEEEECCC T ss_conf 9999769899999078821159-999999976--9819998145 No 318 >2etv_A Iron(III) ABC transporter, periplasmic iron- binding protein, putative; TM0189, structural genomics; HET: MLY; 1.70A {Thermotoga maritima MSB8} SCOP: c.92.2.4 Probab=26.32 E-value=27 Score=13.86 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=35.9 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHH Q ss_conf 861001288868985117765799998663013463111100221100366355799999864015677422 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKE 152 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~ 152 (383) .+.+.+-+||+||.-++.. -.....++.. |||++..-.. .+...+...+.+.+..+--+|--|.+ T Consensus 89 ~E~il~l~PDlVi~~~~~~--~~~~~~l~~~--gipvv~~~~~---~~~~~~~~~~~~~i~~lg~i~g~e~~ 153 (346) T 2etv_A 89 LESLITLQPDVVFITYVDR--XTAXDIQEXT--GIPVVVLSYG---NLGTFEDEDLFRSIELAGXILGREER 153 (346) T ss_dssp HHHHHHHCCSEEEEESCCH--HHHHHHHHHH--TSCEEEECCC---CTTCSCCHHHHHHHHHHHHHHTCHHH T ss_pred HHHHHCCCCCEEEECCCCC--HHHHHHHHHC--CCCEEEECCC---CCCCCCHHHHHHHHHHHCCCCCCCHH T ss_conf 9999708997999578774--0366676522--8973651368---76768999999999986331189179 No 319 >3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD- dependent, metal-binding, NAD, NADP, oxidoreductase, pyridoxine biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Probab=26.30 E-value=27 Score=13.86 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=55.7 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH-----HHCCCEEEE---C---------HHHCCEE------ Q ss_conf 5999976821478999999999973899839999717899-----947880650---4---------4453110------ Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSL-----QKEGLVSLF---D---------FSELSVI------ 61 (383) Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m-----~~~G~~~~~---~---------~~~l~v~------ 61 (383) ||.|+.|+++|= |..++-.+... +...++.-+|.+.. +..|++.-+ + ...+.+. T Consensus 10 rIaIT~GDPaGI--GpEIilk~~~~-~~~~~~iiigd~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~~l~v~~~~~~~ 86 (334) T 3lxy_A 10 RLVITPGEPAGV--GPDLAITLAQQ-DWPVELVVCADPALLLARASQLNLPLQLREYQADQPAIAQQAGSLTILPVKTAV 86 (334) T ss_dssp EEEEECCCTTSS--HHHHHHHHTTS-CCSSEEEEEECHHHHHHHHHHTTCCCEEEECCTTSCCCCCCTTEEEEEECCCSS T ss_pred CEEEECCCCCHH--HHHHHHHHHHC-CCCCCEEEEECHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCEEEECCCCCC T ss_conf 589975887541--79999999716-799986999899999999997599961788478513221467833540012356 Q ss_pred ----EHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE------------ECHHHHHHHHHHHHH Q ss_conf ----136746645999999999986100128886898------------511776579999866 Q gi|254780767|r 62 ----GIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI------------VDNPDFTHRVAKRVR 109 (383) Q Consensus 62 ----G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~------------iD~pgFnl~lak~lk 109 (383) |-.+ -.+-......++...+.+++.+.|++|+ .+|||..--||+..+ T Consensus 87 ~~~~G~~~-~~~g~~~~~~l~~A~~~~~~g~~daiVT~PInK~~i~~aG~~f~GHTE~la~~~~ 149 (334) T 3lxy_A 87 NVVPGKLD-VGNSHYVVETLAKACDGAISGEFAALVTGPVQKSIINDAGIPFIGHTEFFADRSH 149 (334) T ss_dssp CCCTTCCC-GGGHHHHHHHHHHHHHHHHHTSSSCEEECCCCHHHHHHTTCCCSCHHHHHHHHHT T ss_pred CCCCCCCC-HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEECCC T ss_conf 57889757-3233899999999998853241048997761256676438885873456530027 No 320 >2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} Probab=25.66 E-value=28 Score=13.78 Aligned_cols=87 Identities=13% Similarity=0.219 Sum_probs=45.5 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCE-EEEE-ECCHHHHHCCCEEE--ECHHHCCEEEHHHHHHHHHHHHHHHHH Q ss_conf 4599997682147899999999997389983-9999-71789994788065--044453110136746645999999999 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPI-NLVG-VGGPSLQKEGLVSL--FDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~-~~~g-iGG~~m~~~G~~~~--~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383) +||+|+... |--| .+..+|++ .+.+ +++- -|-+.+.......- .++.+ ... T Consensus 25 ~KILviGsG--gREh--Aia~~l~~--s~~~~~v~~~pgN~g~~~~~~~~~~~i~~~d-------------------~~~ 79 (452) T 2qk4_A 25 ARVLIIGSG--GREH--TLAWKLAQ--SHHVKQVLVAPGNAGTACSEKISNTAISISD-------------------HTA 79 (452) T ss_dssp EEEEEEECS--HHHH--HHHHHHTT--CTTEEEEEEEECCGGGSBSSSEEECCCCSSC-------------------HHH T ss_pred CEEEEECCC--HHHH--HHHHHHHH--CCCCCEEEEECCCHHHHCCCCCCCCCCCCCC-------------------HHH T ss_conf 779999978--8999--99999985--9898889997898798500431234658679-------------------999 Q ss_pred HHHHCCCCCCCEEEE-ECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 986100128886898-511776579999866301346311 Q gi|254780767|r 80 TVELIVSSKPDVLLI-VDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~-iD~pgFnl~lak~lkk~~~~ipvi 118 (383) +.+.+++++||.||. -..| ...-++-.+++. |+|++ T Consensus 80 i~~~~~~~~iDlvivGpE~p-L~~Gl~D~l~~~--gi~vf 116 (452) T 2qk4_A 80 LAQFCKEKKIEFVVVGPEAP-LAAGIVGNLRSA--GVQCF 116 (452) T ss_dssp HHHHHHHHTCCEEEECSSHH-HHTTHHHHHHHT--TCCEE T ss_pred HHHHHHHHCCCEEEECCCHH-HHHHHHHHHHHC--CCCEE T ss_conf 99999985999999897389-898899999867--99443 No 321 >1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A* Probab=25.64 E-value=28 Score=13.78 Aligned_cols=52 Identities=4% Similarity=0.115 Sum_probs=29.9 Q ss_pred CCCCEEEEEECCCCHHHH----HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCC Q ss_conf 987459999768214789----99999999973899839999717899947880650444531 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLL----AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELS 59 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~----~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~ 59 (383) |++ ||+|+.|-+..+-. +...+++|++. +.++++.=+ -+.+++...+..++. T Consensus 1 ~~K-KvLII~aHP~~~S~~~al~~~~~~~l~~~-G~eV~v~DL-----y~~~f~P~l~~~d~~ 56 (273) T 1d4a_A 1 VGR-RALIVLAHSERTSFNYAMKEAAAAALKKK-GWEVVESDL-----YAMNFNPIISRKDIT 56 (273) T ss_dssp CCC-EEEEEECCSCTTSHHHHHHHHHHHHHHHT-TCEEEEEET-----TTTTCCCCCCGGGBC T ss_pred CCC-EEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEEEC-----CCCCCCCCCCHHHHH T ss_conf 986-59999818998557999985107899978-997999987-----336899867989984 No 322 >1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Probab=25.50 E-value=28 Score=13.76 Aligned_cols=12 Identities=17% Similarity=0.672 Sum_probs=7.4 Q ss_pred CCCEEEEECHHH Q ss_conf 888689851177 Q gi|254780767|r 88 KPDVLLIVDNPD 99 (383) Q Consensus 88 ~Pd~vi~iD~pg 99 (383) +-|+++++|..| T Consensus 7 ~~DivfvlD~S~ 18 (213) T 1pt6_A 7 QLDIVIVLDGSN 18 (213) T ss_dssp CEEEEEEEECCT T ss_pred CEEEEEEEECCC T ss_conf 448999997988 No 323 >3ofo_B 30S ribosomal protein S2; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_B* 2wwl_B 3ofp_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 3kc4_B 3or9_B 3ora_B 2qal_B* 1p87_B 2aw7_B 2avy_B ... Probab=25.24 E-value=28 Score=13.73 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=14.5 Q ss_pred HHHHHHHHCCCEEEECCCC Q ss_conf 6688876275302540577 Q gi|254780767|r 278 VILELALCGIPVVSIYKSE 296 (383) Q Consensus 278 aTLE~al~g~P~IV~Yk~~ 296 (383) |-.||..+|+|+|-+-.++ T Consensus 164 ai~Ea~~l~IPvI~ivDTn 182 (218) T 3ofo_B 164 AIKEANNLGIPVFAIVDTN 182 (218) T ss_dssp HHHHHHHTTCCEEEECCTT T ss_pred HHHHHHHCCCCEEEEEECC T ss_conf 9999998599779985079 No 324 >3lhs_A Ferrichrome ABC transporter lipoprotein; siderophore, iron, receptor, binding protein, T protein; HET: SF8; 1.30A {Staphylococcus aureus subsp} PDB: 3eiw_A 3eix_A* 3li2_A* Probab=25.20 E-value=28 Score=13.73 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=16.0 Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHH Q ss_conf 861001288868985117765799998663 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRK 110 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk 110 (383) .+.|..-+||++|.-.+.+ -.....+.+ T Consensus 78 ~E~i~~l~PDlii~~~~~~--~~~~~~~~~ 105 (296) T 3lhs_A 78 LEEISKLKPDLIIADSSRH--KGINKELNK 105 (296) T ss_dssp HHHHHHTCCSEEEEETTTT--TTTHHHHHH T ss_pred HHHHHCCCCCEEEECCCCC--HHHHHHHHH T ss_conf 9999627999999648875--146788861 No 325 >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Probab=25.12 E-value=28 Score=13.72 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=16.0 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 8745999976821478999999999973 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEM 29 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~ 29 (383) ++|||-|+ | .|. .|+.+.-.|... T Consensus 4 ~~~KV~Ii-G--aG~-VG~~~a~~l~~~ 27 (318) T 1ez4_A 4 NHQKVVLV-G--DGA-VGSSYAFAMAQQ 27 (318) T ss_dssp TBCEEEEE-C--CSH-HHHHHHHHHHHH T ss_pred CCCEEEEE-C--CCH-HHHHHHHHHHHC T ss_conf 99879998-9--798-999999999827 No 326 >3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae TIGR4} SCOP: d.159.1.7 Probab=25.05 E-value=18 Score=15.02 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=18.9 Q ss_pred CCCCEEEEEECCCCHHHHHH--HHHHHHHHHCCCCEEEEEECCH Q ss_conf 98745999976821478999--9999999738998399997178 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAG--DLIKSLKEMVSYPINLVGVGGP 42 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a--~li~~Lk~~~~~~~~~~giGG~ 42 (383) |++|||.|++ |.||- .|=+.+... ..+++..-..|+ T Consensus 4 m~~~kI~viS-----D~Hgn~~al~~vl~~~-~~~~D~iih~GD 41 (176) T 3ck2_A 4 MAKQTIIVMS-----DSHGDSLIVEEVRDRY-VGKVDAVFHNGD 41 (176) T ss_dssp CCCEEEEEEC-----CCTTCHHHHHHHHHHH-TTTSSEEEECSC T ss_pred CCCCEEEEEE-----CCCCCHHHHHHHHHHH-HCCCCEEEECCC T ss_conf 5478999990-----0689989999999997-779999998998 No 327 >2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 2hl1_A* Probab=24.98 E-value=18 Score=14.99 Aligned_cols=70 Identities=16% Similarity=0.301 Sum_probs=38.2 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEE---------CHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCCCCCCCHHHHHHHHH Q ss_conf 99999999861001288868985---------11776579999866301--34631111002211003663557999998 Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIV---------DNPDFTHRVAKRVRKKM--PNLPIINYVCPSVWAWREGRARKMCAYIN 141 (383) Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~i---------D~pgFnl~lak~lkk~~--~~ipvi~yv~PqvWAWr~~R~k~~~~~~d 141 (383) +.+...++.+...+.+.+.+|+= -+|++-+.+.+.+.... -|..|. T Consensus 57 v~~av~eI~~~a~kv~~~~ivlYPyAHLSs~La~P~~A~~vL~~le~~L~~~g~eV~----------------------- 113 (143) T 2hl0_A 57 SLKAIEEISKVAEQVKAENVFVYPFAHLSSELAKPSVAMDILNRVYQGLKERGFNVG----------------------- 113 (143) T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECGGGCSSBCCHHHHHHHHHHHHHHHHHTTCEEE----------------------- T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE----------------------- T ss_conf 999999999999864998799937111168778968999999999999985896599----------------------- Q ss_pred HHCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC Q ss_conf 640156774223200255314763882112210 Q gi|254780767|r 142 QVISILPFEKEVMQRLGGPPTTFVGHPLSSSPS 174 (383) Q Consensus 142 ~~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~ 174 (383) --|| -||+.+ +.+.-||||.+... T Consensus 114 ----raPF--GwyK~F---~i~ckGHPLsElSr 137 (143) T 2hl0_A 114 ----KAPF--GYYKAF---KISCKGHPLAELSR 137 (143) T ss_dssp ----ECCS--SEEEEE---EEEECCCTTSEEEE T ss_pred ----EECC--CCEEEE---EEEECCCCHHHHCC T ss_conf ----8176--220447---98845750799520 No 328 >1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, malate dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Probab=24.61 E-value=29 Score=13.66 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=28.2 Q ss_pred CCCCCEEEEECH-----------HHHHHHHHHHH-HHHCCCC------CCEEEE---------CCCCCCCCCCCHH--H- Q ss_conf 128886898511-----------77657999986-6301346------311110---------0221100366355--7- Q gi|254780767|r 86 SSKPDVLLIVDN-----------PDFTHRVAKRV-RKKMPNL------PIINYV---------CPSVWAWREGRAR--K- 135 (383) Q Consensus 86 ~~~Pd~vi~iD~-----------pgFnl~lak~l-kk~~~~i------pvi~yv---------~PqvWAWr~~R~k--~- 135 (383) ....+++|.-|. -|.-+.++|.+ -+..-|| |++-=+ -|-.--||+.|++ . T Consensus 168 ~~~v~viVVTDG~rILGLGDlG~~gm~I~vGK~~Ly~~~aGI~P~~~lPI~LDvGTnn~~Ll~Dp~YlG~r~~Rv~g~~y 247 (605) T 1o0s_A 168 EEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDY 247 (605) T ss_dssp CSCCCEEEEECSSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCSHHH T ss_pred CCCCEEEEEECCCCEEECCCCCCCCCCCEEEHHHHHHHHCCCCHHHCCCEEECCCCCHHHHCCCCHHHCCCCCCCCCCCH T ss_conf 66825999966710331467787644521136876666359887654775643788627651473431345555663348 Q ss_pred ---HHHHHHHHCCCC Q ss_conf ---999998640156 Q gi|254780767|r 136 ---MCAYINQVISIL 147 (383) Q Consensus 136 ---~~~~~d~~~~if 147 (383) +.+++..+...| T Consensus 248 d~~idefv~av~~~~ 262 (605) T 1o0s_A 248 DTLLDNFMKACTKKY 262 (605) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHC T ss_conf 999999999999861 No 329 >2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Probab=24.50 E-value=29 Score=13.64 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=42.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC--HHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHH---HHHH Q ss_conf 45999976821478999999999973899839999717--899947880650444531101367466459999---9999 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG--PSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFI---FRIN 78 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG--~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~---~~~~ 78 (383) |||.+.+ |+| .|...+++|.+. +.++.||-- ++-...+.. .++.+++-- .++|.+. -.-. T Consensus 1 Mkiv~~~---~~~-~~~~~l~~L~~~---~~~i~~V~t~~~~~~~~~~~--~~v~~~a~~------~~ip~~~~~~~~~~ 65 (305) T 2bln_A 1 MKTVVFA---YHD-MGCLGIEALLAA---GYEISAIFTHTDNPGEKAFY--GSVARLAAE------RGIPVYAPDNVNHP 65 (305) T ss_dssp CEEEEEE---CHH-HHHHHHHHHHHT---TCEEEEEECCCC------CC--CCHHHHHHH------HTCCEECCSCCCSH T ss_pred CEEEEEC---CCH-HHHHHHHHHHHC---CCCEEEEEECCCCCCCCCCC--CHHHHHHHH------CCCCEECCCCCCCH T ss_conf 9599992---778-999999999978---99889999089999887898--989999998------69989845989989 Q ss_pred HHHHHCCCCCCCEEEEECHHH Q ss_conf 998610012888689851177 Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPD 99 (383) Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pg 99 (383) .+.+.+++.+||++|.+.|+- T Consensus 66 ~~~~~l~~~~~dl~i~~~~~~ 86 (305) T 2bln_A 66 LWVERIAQLSPDVIFSFYYRH 86 (305) T ss_dssp HHHHHHHHTCCSEEEEESCCS T ss_pred HHHHHHHHCCCCEEEEEHHHH T ss_conf 999999832999999863212 No 330 >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Probab=24.18 E-value=18 Score=15.05 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=26.0 Q ss_pred CCCCCEEEEECHHHHH---HHHHHHHHHHCCCCCCEEEECCCCCCCCCC Q ss_conf 1288868985117765---799998663013463111100221100366 Q gi|254780767|r 86 SSKPDVLLIVDNPDFT---HRVAKRVRKKMPNLPIINYVCPSVWAWREG 131 (383) Q Consensus 86 ~~~Pd~vi~iD~pgFn---l~lak~lkk~~~~ipvi~yv~PqvWAWr~~ 131 (383) ..++++|+.|..-|.. -++.+.++++ |+++|-=.|-...+.-.+ T Consensus 149 ~~~tkaIi~vh~~G~~~d~~~i~~i~k~~--~i~vIEDaAqa~Ga~~~g 195 (399) T 2oga_A 149 TPRTRALLPVHLYGHPADMDALRELADRH--GLHIVEDAAQAHGARYRG 195 (399) T ss_dssp CTTEEEECCBCGGGCCCCHHHHHHHHHHH--TCEECEECTTCTTCEETT T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHC--CCEEEEECCCHHCCCCCC T ss_conf 76650898527889800369999999973--986999773121573463 No 331 >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Probab=24.10 E-value=30 Score=13.59 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=11.9 Q ss_pred CEEEEHHHCCCCCCCHHHCCCCCHH Q ss_conf 1023024407842612420548989 Q gi|254780767|r 310 TCALPNLIVDYPLVPEYFNSMIRSE 334 (383) Q Consensus 310 ~i~LpNii~~~~ivPEliQ~~~~~~ 334 (383) |+|+|=++-.+.+ -+.+.-+++++ T Consensus 274 ~~s~P~~lg~~Gv-~~v~~l~L~~~ 297 (322) T 1t2d_A 274 FGGTPVVLGANGV-EQVIELQLNSE 297 (322) T ss_dssp EEEEEEEEETTEE-EEECCCCCCHH T ss_pred EEEEEEEECCCCE-EEECCCCCCHH T ss_conf 9998899834740-79789998999 No 332 >3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} Probab=23.84 E-value=30 Score=13.56 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=26.3 Q ss_pred HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 99861001288868985117765799998663013463111 Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383) Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383) .+.+.+...++|.+.++=.|+|.-.+.+.+++. |+|++. T Consensus 98 ~~~~~~~~~~~~~iy~CGP~~M~~~v~~~l~~~--GvP~~~ 136 (142) T 3lyu_A 98 KVRELLESEDWDLVFMVGPVGDQKQVFEVVKEY--GVPMLE 136 (142) T ss_dssp HHHHHHHSSCCSEEEEESCHHHHHHHHHHHHHH--TCCBC- T ss_pred HHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHC--CCCEEE T ss_conf 877544677886999969999999999999981--989880 No 333 >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide complex; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Probab=23.79 E-value=30 Score=13.55 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=23.0 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 87459999768214789999999999738998399997 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV 39 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi 39 (383) ++|||+|. |-. =..|+.|++.|.++ + .++.++ T Consensus 19 ~~MkILVT-Ggt--GfiG~~lv~~Ll~~-G--~~V~~~ 50 (330) T 2pzm_A 19 SHMRILIT-GGA--GCLGSNLIEHWLPQ-G--HEILVI 50 (330) T ss_dssp TCCEEEEE-TTT--SHHHHHHHHHHGGG-T--CEEEEE T ss_pred CCCEEEEE-CCC--CHHHHHHHHHHHHC-C--CEEEEE T ss_conf 99769998-987--78999999999978-6--989999 No 334 >3iac_A Glucuronate isomerase; IDP02065, structural genomics, center for structural genomics of infectious diseases, csgid; 2.22A {Salmonella typhimurium} Probab=23.71 E-value=30 Score=13.55 Aligned_cols=107 Identities=10% Similarity=0.126 Sum_probs=59.8 Q ss_pred CCEEEHHHHH---HHHHHHHHHHHH--------HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHH-CCCCCCEEEECCCC Q ss_conf 3110136746---645999999999--------98610012888689851177657999986630-13463111100221 Q gi|254780767|r 58 LSVIGIMQVV---RHLPQFIFRINQ--------TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKK-MPNLPIINYVCPSV 125 (383) Q Consensus 58 l~v~G~~evl---~~~~~~~~~~~~--------~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~-~~~ipvi~yv~Pqv 125 (383) -.+.|+-|++ .+...++...+. ....+++.+..++.+-|-|-=.|.-.+.+.+- +.+.+|+ T Consensus 113 ~~~FGide~ll~~~~A~~i~d~~n~~L~~~~f~~r~Ll~~~nVe~v~TTDDP~DdLe~H~~la~~~~~~~rV~------- 185 (473) T 3iac_A 113 RRPFGITGTLFGPDTAESIWTQCNEKLATPAFSARGIMQQMNVRMVGTTDDPIDSLEYHRQIAADDSIDIEVA------- 185 (473) T ss_dssp HTTTCCCSCCCSHHHHHHHHHHHHHHHTSGGGSHHHHHHHTTEEEEECCBCTTCCCHHHHHHHHCTTCCSEEE------- T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCEE------- T ss_conf 9976998877975439999999999976887768999998690699947999885789999853799776123------- Q ss_pred CCCCCCCHH-----HHHHHHHH--------------HCCCCCCCHHHHHCCCCCCEEECCCCCCCC Q ss_conf 100366355-----79999986--------------401567742232002553147638821122 Q gi|254780767|r 126 WAWREGRAR-----KMCAYINQ--------------VISILPFEKEVMQRLGGPPTTFVGHPLSSS 172 (383) Q Consensus 126 WAWr~~R~k-----~~~~~~d~--------------~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~ 172 (383) .+||+-++- .+..++++ ++-.+-.=.+||.+ +|..+.=.|+|-... T Consensus 186 PtfRPD~~l~i~~~~f~~~l~kL~~~sg~~i~s~~~~l~AL~~R~~~F~~-~G~~~sDhgl~~~~~ 250 (473) T 3iac_A 186 PSWRPDKVFKIELDGFVDYLRKLEAAADVSITRFDDLRQALTRRLDHFAA-CGCRASDHGIETLRF 250 (473) T ss_dssp CCBCCHHHHCTTSTTHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHH-TTCCEEEEEESSCCC T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HCCEEECCCCCCCCC T ss_conf 03155010265717699999999998598868899999999999999998-098896037886665 No 335 >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Probab=23.70 E-value=30 Score=13.54 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=19.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHC-CCCEEEEEECC Q ss_conf 459999768214789999999999738-99839999717 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMV-SYPINLVGVGG 41 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~-~~~~~~~giGG 41 (383) |||-|+ | +|++ |+.+.-.|..+. -.++.++-+-. T Consensus 1 mKI~Ii-G--aG~V-G~~~a~~l~~~~~~~el~L~Di~~ 35 (304) T 2v6b_A 1 MKVGVV-G--TGFV-GSTAAFALVLRGSCSELVLVDRDE 35 (304) T ss_dssp CEEEEE-C--CSHH-HHHHHHHHHHTTCCSEEEEECSSH T ss_pred CEEEEE-C--CCHH-HHHHHHHHHHCCCCCEEEEECCCC T ss_conf 979999-9--6889-999999998379988699985899 No 336 >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Probab=23.60 E-value=30 Score=13.53 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=24.0 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9874599997682147899999999997389983999971 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |+--||+|. | + |- .|..|++.|.++ +.+++|+. T Consensus 1 M~m~kiLIt-G-a-G~-iG~~l~~~L~~~---g~~V~~~~ 33 (286) T 3gpi_A 1 MSLSKILIA-G-C-GD-LGLELARRLTAQ---GHEVTGLR 33 (286) T ss_dssp -CCCCEEEE-C-C-SH-HHHHHHHHHHHT---TCCEEEEE T ss_pred CCCCEEEEE-C-C-CH-HHHHHHHHHHHC---CCEEEEEE T ss_conf 997879998-9-4-59-999999999978---59899997 No 337 >1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A* 1ll6_A Probab=23.54 E-value=30 Score=13.52 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=61.6 Q ss_pred HHHHHHHHHHCCCCEE-EEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-ECH Q ss_conf 9999999973899839-99971789994788065044453110136746645999999999986100128886898-511 Q gi|254780767|r 20 GDLIKSLKEMVSYPIN-LVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI-VDN 97 (383) Q Consensus 20 a~li~~Lk~~~~~~~~-~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~-iD~ 97 (383) -+-+.+||++ +|+++ +..|||-... . .|..++..-..-.+..+.+++.++++.-|-|-+ --| T Consensus 74 ~~~~~~lk~~-~p~lKvllSiGGw~~s-~--------------~f~~~~~~~~~R~~Fi~siv~~l~~y~fDGIDiDWE~ 137 (392) T 1ll7_A 74 IKQMYLLKKN-NRNLKTLLSIGGWTYS-P--------------NFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWQY 137 (392) T ss_dssp HHHHHHHHHH-CTTCEEEEEEEHHHHG-G--------------GSHHHHTSHHHHHHHHHHHHHHHHHHTCSEEEEECSC T ss_pred HHHHHHHHHH-CCCCEEEEEEECCCCC-C--------------CHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCC T ss_conf 9999999865-8997699998189888-7--------------6766744999999999999999861666735661141 Q ss_pred HH-------HHHHHHHHHHHHC--------CCCC-CEEE-ECCCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 77-------6579999866301--------3463-1111-00221100366355799999864015 Q gi|254780767|r 98 PD-------FTHRVAKRVRKKM--------PNLP-IINY-VCPSVWAWREGRARKMCAYINQVISI 146 (383) Q Consensus 98 pg-------Fnl~lak~lkk~~--------~~ip-vi~y-v~PqvWAWr~~R~k~~~~~~d~~~~i 146 (383) |+ |. .+.+.+|... .+.. .+-. +++..|.-+.--.+.+.+++|.+.+. T Consensus 138 p~~~~~~~~~~-~ll~elr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~yd~~~l~~~vD~i~vM 202 (392) T 1ll7_A 138 PEDEKQANDFV-LLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNKLKLAEMDKYLDFWNLM 202 (392) T ss_dssp CCSHHHHHHHH-HHHHHHHHHHHHHHHTSTTSCCCEEEEEEECSHHHHTTSCHHHHHTTCSEEEEE T ss_pred CCCCCCHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHCHHHHHHHHHHCCEEEEE T ss_conf 45543112088-999999999998765404787247888436875761412099887305889998 No 338 >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* Probab=23.48 E-value=30 Score=13.52 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=24.9 Q ss_pred CCCCHHHHHHHHHH-----------HHCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 54898999999999-----------8449899999999999999983899 Q gi|254780767|r 329 SMIRSEALVRWIER-----------LSQDTLQRRAMLHGFENLWDRMNTK 367 (383) Q Consensus 329 ~~~~~~~i~~~~~~-----------ll~d~~~r~~~~~~~~~~~~~Lg~~ 367 (383) +-.+++...+.+.. +++.+..-.++.+++.+..++-|-. T Consensus 353 GI~s~~DA~e~i~AGAslVQiyTalvy~Gp~~i~~I~~eL~~~L~~~G~~ 402 (415) T 3i65_A 353 GIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYY 402 (415) T ss_dssp SCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHTTCS T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 98999999999984987988517888319189999999999999984999 No 339 >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} Probab=23.18 E-value=31 Score=13.48 Aligned_cols=18 Identities=11% Similarity=0.123 Sum_probs=11.7 Q ss_pred EEEEEECCCCCCHHHHCC Q ss_conf 059985387430123051 Q gi|254780767|r 194 KILLLPGSRAQEIYKILP 211 (383) Q Consensus 194 ~I~llPGSR~~EI~~~lP 211 (383) -+++-|+..-+++...++ T Consensus 138 Glalnp~T~i~~l~~~l~ 155 (246) T 3inp_A 138 GLALNPATGIDCLKYVES 155 (246) T ss_dssp EEEECTTCCSGGGTTTGG T ss_pred EEEECCCCCHHHHHHHHH T ss_conf 999637778999988764 No 340 >2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, protein structure initiative NDRT; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Probab=23.17 E-value=31 Score=13.48 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHC----------CCHHHHHHH---HHHCCCEEEECCCC Q ss_conf 357887635523----------311566888---76275302540577 Q gi|254780767|r 262 KQVFMTCNAAMA----------ASGTVILEL---ALCGIPVVSIYKSE 296 (383) Q Consensus 262 ~~~l~~sd~ai~----------~SGTaTLE~---al~g~P~IV~Yk~~ 296 (383) .+.+..||++|+ -|||+- |+ ..+|+| |++|.+. T Consensus 62 ~~~i~~~D~via~Ld~f~g~~~D~GT~~-EiG~A~algKP-Vv~~~~d 107 (161) T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAF-EVGCAAALNKM-VLTFTSD 107 (161) T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHH-HHHHHHHTTCE-EEEECSC T ss_pred HHHHHHCCEEEEEECCCCCCCCCCCHHH-HHHHHHHCCCE-EEEEECC T ss_conf 9999879999999237779999988899-99999987995-9999667 No 341 >1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C* Probab=23.14 E-value=31 Score=13.47 Aligned_cols=135 Identities=13% Similarity=0.196 Sum_probs=83.2 Q ss_pred CCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC-CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 565059985387430123051118999876402735126201663-3688999999604888505520552035788763 Q gi|254780767|r 191 QWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS-SQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCN 269 (383) Q Consensus 191 ~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd 269 (383) ..+.|.+.||=--. +.+---..-+.++.|.++..+.+|-|..+. -....+.-.+.+.+.+.+++..-++...-+..+| T Consensus 22 ~A~~VvIVPGYGmA-vAqAQ~~v~el~~~L~~~g~~V~faIHPVAGRMPGHmNVLLAEA~VPYd~v~eMdeIN~~f~~tD 100 (180) T 1pno_A 22 NASKVIIVPGYGMA-VAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTAD 100 (180) T ss_dssp TCSEEEEEECHHHH-HHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTTHHHHHHHHTTCCGGGEEEHHHHGGGGGGCS T ss_pred HCCEEEEECCHHHH-HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHHHCHHHHCCHHHHCC T ss_conf 48949997681799-99988999999999986898169984304033875412466531798899737664044021267 Q ss_pred HHHCCCHHHHH--------HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHH Q ss_conf 55233115668--------88762753025405774100001024676102302440784261242 Q gi|254780767|r 270 AAMAASGTVIL--------ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYF 327 (383) Q Consensus 270 ~ai~~SGTaTL--------E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEli 327 (383) ++|+.----+. ..-+.|-|.+=+.|..- ...++|-+..-|.+..|=+.-++-.-=|+ T Consensus 101 v~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kak~-viv~KRsm~~GyaGv~NpLF~~~nt~Mlf 165 (180) T 1pno_A 101 VAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGT-VLFIKRSMASGYAGVENELFFRNNTMMLF 165 (180) T ss_dssp EEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSE-EEEEESSSCCCTTCCCCGGGTSTTEEEEE T ss_pred EEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCE-EEEEECCCCCCCCCCCCCCEECCCCEEEE T ss_conf 999943654357766169999756995566040888-99997888888687877625638847993 No 342 >3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* Probab=22.86 E-value=31 Score=13.44 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=12.7 Q ss_pred CCCCEEEE-ECHHHHH-HHHHHHHHHH Q ss_conf 28886898-5117765-7999986630 Q gi|254780767|r 87 SKPDVLLI-VDNPDFT-HRVAKRVRKK 111 (383) Q Consensus 87 ~~Pd~vi~-iD~pgFn-l~lak~lkk~ 111 (383) .+||++++ +.=||.| +.+++.+|+. T Consensus 59 ~~~DliilD~~MP~~dG~e~~~~ir~~ 85 (145) T 3kyj_B 59 PNVDLILLDIEMPVMDGMEFLRHAKLK 85 (145) T ss_dssp TTCCEEEECTTSCCCTTCHHHHHHHHH T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHC T ss_conf 999899987899999999999999856 No 343 >3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus} Probab=22.68 E-value=32 Score=13.41 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=33.3 Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHH Q ss_conf 98999999999844989999999999999998389999----899999999986 Q gi|254780767|r 332 RSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKP----AGHMAAEIVLQV 381 (383) Q Consensus 332 ~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~----a~~~AA~~I~~~ 381 (383) |-..|.+++...+.|. +.+..+.+.+.+++|+..+ -.-.||.+|.++ T Consensus 3 NLnqIqkEvs~vl~~q---KS~k~dI~aILa~lGSt~~~~~nlEavAAKIi~Dl 53 (95) T 3k4t_A 3 NLNQIQKEVSEILSDQ---KSMKADIKAILELLGSQNPIKESLETVAAKIVNDL 53 (95) T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 5899999999999999---99998899999985689975130999999999999 No 344 >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Probab=22.19 E-value=32 Score=13.35 Aligned_cols=89 Identities=19% Similarity=0.333 Sum_probs=52.0 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC-----HHHHHCCCEEEE-CHHHCCEEEHHHHHHHHHHHHHH Q ss_conf 745999976821478999999999973899839999717-----899947880650-44453110136746645999999 Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG-----PSLQKEGLVSLF-DFSELSVIGIMQVVRHLPQFIFR 76 (383) Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG-----~~m~~~G~~~~~-~~~~l~v~G~~evl~~~~~~~~~ 76 (383) .|||.|+... -.|..+.+.|++. ++++..+-- +.+++.|...++ |.++ T Consensus 4 gmhVII~G~G----r~G~~va~~L~~~---g~~vvvID~d~~~v~~l~~~g~~vi~GDat~------------------- 57 (413) T 3l9w_A 4 GMRVIIAGFG----RFGQITGRLLLSS---GVKMVVLDHDPDHIETLRKFGMKVFYGDATR------------------- 57 (413) T ss_dssp CCSEEEECCS----HHHHHHHHHHHHT---TCCEEEEECCHHHHHHHHHTTCCCEESCTTC------------------- T ss_pred CCEEEEECCC----HHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHCCCCEEEECCCC------------------- T ss_conf 9969998988----8999999999968---9988999899999999997799099963899------------------- Q ss_pred HHHHHHHCCCCCCCEEE-EECHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 99998610012888689-8511776579999866301346311 Q gi|254780767|r 77 INQTVELIVSSKPDVLL-IVDNPDFTHRVAKRVRKKMPNLPII 118 (383) Q Consensus 77 ~~~~~~~i~~~~Pd~vi-~iD~pgFnl~lak~lkk~~~~ipvi 118 (383) ..+.+..--.+.+++| ++|.+.-|+.++..+|+.++.++++ T Consensus 58 -~~~L~~Agi~~A~~vIia~~d~~~n~~i~~~ar~~~p~~~Ii 99 (413) T 3l9w_A 58 -MDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQII 99 (413) T ss_dssp -HHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEE T ss_pred -HHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEE T ss_conf -999985697759999997198899999999999978998399 No 345 >3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} Probab=21.83 E-value=33 Score=13.30 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=32.2 Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHH Q ss_conf 9861001288868985117765799998663013463111100221100366355799999864015677422 Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKE 152 (383) Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~ 152 (383) -.+.+..-+||+||.-++-+-...+ +.+++. ++|++.+..++-| ..+.+.++.+--+|..|.+ T Consensus 51 n~E~i~~l~PDlIi~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~-------~~~~~~i~~~g~~~g~~~~ 113 (255) T 3md9_A 51 NAEGILAMKPTMLLVSELAQPSLVL-TQIASS--GVNVVTVPGQTTP-------ESVAMKINAVATALHQTEK 113 (255) T ss_dssp CHHHHHTTCCSEEEEETTCSCHHHH-HHHHHT--TCEEEEECCCCSH-------HHHHHHHHHHHHHHTCHHH T ss_pred CHHHHHCCCCCEEEECCCCCCHHHH-HHHHHC--CCCEEEECCCCCH-------HHHHHHHHHHHHHCCCHHH T ss_conf 9999946699889964644415677-788760--7833640477987-------8988999898786070689 No 346 >3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolase; HET: CFF; 1.65A {Bionectria ochroleuca} PDB: 3g6l_A* Probab=21.77 E-value=33 Score=13.30 Aligned_cols=123 Identities=11% Similarity=0.156 Sum_probs=68.9 Q ss_pred HHHHHHHHHCCCCEE-EEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-ECHH Q ss_conf 999999973899839-99971789994788065044453110136746645999999999986100128886898-5117 Q gi|254780767|r 21 DLIKSLKEMVSYPIN-LVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI-VDNP 98 (383) Q Consensus 21 ~li~~Lk~~~~~~~~-~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~-iD~p 98 (383) +-+.+||++ +|+++ +..|||-.+ + + +|..++..--.-.+..+.+++.++++.-|-|-+ --|| T Consensus 93 ~~~~~lK~~-np~lKvllSvGGw~~-s---------~-----~f~~~~~~~~~R~~Fi~siv~~l~~y~fDGIDIDWE~p 156 (406) T 3g6m_A 93 KQLYKLKKA-NRSLKIMLSIGGWTW-S---------T-----NFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYP 156 (406) T ss_dssp HHHHHHHHH-CTTCEEEEEEECSSS-C---------T-----THHHHTSSHHHHHHHHHHHHHHHHHHTCSEEEEECSCC T ss_pred HHHHHHHHH-CCCCEEEEEEECCCC-C---------C-----CHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 999999986-899869999958877-7---------6-----47778669999999999999999846667500232226 Q ss_pred H-------HHHHHHHHHHHHC--------CCCC--CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCC Q ss_conf 7-------6579999866301--------3463--111100221100366355799999864015677422320025531 Q gi|254780767|r 99 D-------FTHRVAKRVRKKM--------PNLP--IINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPP 161 (383) Q Consensus 99 g-------Fnl~lak~lkk~~--------~~ip--vi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~ 161 (383) + |. .+.+.+|+.. .+.+ +.-.+++..|..+......+.+++|.+...- |+ ++|-- T Consensus 157 ~~~~d~~~~~-~ll~~Lr~~~~~~~~~~~~g~~~~ls~a~~~~~~~~~~~d~~~l~~~vD~invMt------YD-~~g~w 228 (406) T 3g6m_A 157 ASETDANNMV-LLLQRVRQELDSYSATYANGYHFQLSIAAPAGPSHYNVLKLAQLGSVLDNINLMA------YD-YAGSW 228 (406) T ss_dssp CSHHHHHHHH-HHHHHHHHHHHHHHHHHSTTCCCEEEEEEECSHHHHTTSCHHHHHHHCSEEEEEC------CC-CSSTT T ss_pred CCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCHHHHHHHCCEEEEEC------CC-CCCCC T ss_conf 7732100079-9999999988877666325775389996457978745557999986477766642------12-56777 Q ss_pred EEECCC Q ss_conf 476388 Q gi|254780767|r 162 TTFVGH 167 (383) Q Consensus 162 ~~fVGH 167 (383) ...+|| T Consensus 229 ~~~tg~ 234 (406) T 3g6m_A 229 DSVSGH 234 (406) T ss_dssp SSSCCC T ss_pred CCCCCC T ss_conf 777776 No 347 >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural genomics, NPPSFA; 2.50A {Thermus thermophilus HB8} Probab=21.64 E-value=22 Score=14.41 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=18.2 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHH Q ss_conf 4599997682147899999999997 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKE 28 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~ 28 (383) ||--++.=+|||++|-++++..+++ T Consensus 1 m~ri~tG~~PSG~~HlGh~l~~i~~ 25 (337) T 2el7_A 1 MKRVLSGIQPSGEIHIGNYLGAIKQ 25 (337) T ss_dssp CCCEEEEECSCSCCBHHHHHTHHHH T ss_pred CCEEEECCCCCCCCCHHHHHHHHHH T ss_conf 9856778388985728877999999 No 348 >2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2 Probab=21.60 E-value=33 Score=13.27 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHH---HHHHHCCCCCCE Q ss_conf 645999999999986100128886898511776579999---866301346311 Q gi|254780767|r 68 RHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAK---RVRKKMPNLPII 118 (383) Q Consensus 68 ~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak---~lkk~~~~ipvi 118 (383) +++..+++.+++......+...+.+|+==.-||-+--|. .+|+..++++++ T Consensus 23 ~~~~~Ik~~L~~~l~~~~~~G~~~fisg~a~G~D~~aAe~vl~lk~~yp~i~L~ 76 (181) T 2nx2_A 23 KALYYIKKAIKNRLIAFLDEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVA 76 (181) T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEE T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE T ss_conf 107999999999999999779959997696559999999999975347795499 No 349 >1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Probab=21.56 E-value=33 Score=13.27 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=44.4 Q ss_pred CCCEEEEECH----HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEE Q ss_conf 8886898511----776579999866301346311110022110036635579999986401567742232002553147 Q gi|254780767|r 88 KPDVLLIVDN----PDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTT 163 (383) Q Consensus 88 ~Pd~vi~iD~----pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~ 163 (383) .|=-|+.||. |. .+...+.+.+. +|++++.+.+|..++++..--..-...+..+...-|++. ..+.. +..+. T Consensus 75 ~p~pvl~iDTg~~FpE-Ti~f~d~v~~~-~gl~l~v~~~~~~~~~g~~~~~~~~~~~~~~~K~~pl~~-al~~~-~~d~~ 150 (325) T 1zun_A 75 LPFPVMHVDTRWKFQE-MYRFRDQMVEE-MGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQ-ALDKH-GFDAA 150 (325) T ss_dssp CSSCEEEECCSCCCHH-HHHHHHHHHHT-TTCCEEEECC--------------CCHHHHHHTHHHHHH-HHHHH-TCSEE T ss_pred CCEEEEEECCCCCHHH-HHHHHHHHHHH-HCCCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHH-HHHHC-CCCEE T ss_conf 9835899548986299-99999999998-299722514806776177865578688647887788999-99860-87638 Q ss_pred ECCCCCCC Q ss_conf 63882112 Q gi|254780767|r 164 FVGHPLSS 171 (383) Q Consensus 164 fVGHPl~d 171 (383) +.|..--+ T Consensus 151 i~G~RrdE 158 (325) T 1zun_A 151 FGGARRDE 158 (325) T ss_dssp ECCCCTTS T ss_pred EECCCHHH T ss_conf 84243544 No 350 >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* Probab=21.52 E-value=15 Score=15.60 Aligned_cols=43 Identities=9% Similarity=0.182 Sum_probs=28.2 Q ss_pred HHHCCCCCCCEEEEECHHHHHH---HHHHHHHHHCCCCCCEEEECCCC Q ss_conf 8610012888689851177657---99998663013463111100221 Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTH---RVAKRVRKKMPNLPIINYVCPSV 125 (383) Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl---~lak~lkk~~~~ipvi~yv~Pqv 125 (383) .......++.++|.+.+-|+.. ++.+.+++. |+++|-=.|-.. T Consensus 115 ~~~~~~~~~~~ii~~~~~G~~~d~~~i~~~~~~~--~i~lIED~A~a~ 160 (394) T 1o69_A 115 AIKECEKKPKALILTHLYGNAAKMDEIVEICKEN--DIVLIEDAAEAL 160 (394) T ss_dssp HHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHT--TCEEEEECTTCT T ss_pred HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHC--CCEEEECCHHHH T ss_conf 9850356856999824788851689999999975--986884130432 No 351 >2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* Probab=21.42 E-value=33 Score=13.25 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=61.1 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383) |||.|-=-... |=.+.++|++..| +.++..+|...--..|-++ -..+.+...+..+. T Consensus 1 mkIgvfDSGiG----Glsvl~~l~~~lp-~~~~iY~~D~a~~PYG~ks------------------~~~i~~~~~~~~~~ 57 (255) T 2jfz_A 1 MKIGVFDSGVG----GFSVLKSLLKARL-FDEIIYYGDSARVPYGTKD------------------PTTIKQFGLEALDF 57 (255) T ss_dssp CEEEEEESSST----THHHHHHHHHTTC-CSEEEEEECTTTCCCTTSC------------------HHHHHHHHHHHHHH T ss_pred CEEEEEECCCC----HHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCC------------------HHHHHHHHHHHHHH T ss_conf 98999928976----7999999998789-9998999447899989899------------------99999999999999 Q ss_pred CCCCCCCEEEEEC-HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC Q ss_conf 0012888689851-17765799998663013463111100221100 Q gi|254780767|r 84 IVSSKPDVLLIVD-NPDFTHRVAKRVRKKMPNLPIINYVCPSVWAW 128 (383) Q Consensus 84 i~~~~Pd~vi~iD-~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAW 128 (383) +.+.++|++|.=. ... --....+|+. +.+|++..+.|.+.|= T Consensus 58 l~~~~~~~IVIACNTas--a~al~~lr~~-~~ipiigvi~p~~~a~ 100 (255) T 2jfz_A 58 FKPHEIELLIVACNTAS--ALALEEMQKY-SKIPIVGVIEPSILAI 100 (255) T ss_dssp HGGGCCSCEEECCHHHH--HHTHHHHHHH-CSSCEECSSHHHHHHH T ss_pred HHHCCCCEEEECCCHHH--HHHHHHHHHC-CCCCEEECCCCHHHHH T ss_conf 99739998997576898--9756998844-6886676763069999 No 352 >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Probab=21.25 E-value=34 Score=13.23 Aligned_cols=105 Identities=15% Similarity=0.252 Sum_probs=55.4 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCE-EEH-HHHHHHHHHHHHHHH Q ss_conf 987459999768214789999999999738998399997178999478806504445311-013-674664599999999 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSV-IGI-MQVVRHLPQFIFRIN 78 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v-~G~-~evl~~~~~~~~~~~ 78 (383) |+++|=.++|+ .| -.|.+++|++|+. +++...|--+.-..+- -..+.+-++ +|- .+....|- ..+ T Consensus 1 m~~~~~~lian--rg-~ia~r~~r~~~~~---g~~~v~v~s~~d~~~~---~~~~ad~~~~~~~~~~~~~~yl----~~~ 67 (1150) T 3hbl_A 1 MKQIKKLLVAN--RG-EIAIRIFRAAAEL---DISTVAIYSNEDKSSL---HRYKADESYLVGSDLGPAESYL----NIE 67 (1150) T ss_dssp --CCCEEEECC--CH-HHHHHHHHHHHHT---TCEEEEEECGGGTTCG---GGGTSSEEEECCTTSCTTGGGT----CHH T ss_pred CCCCCEEEEEC--CC-HHHHHHHHHHHHC---CCEEEEECCHHHHCCC---CHHHCCEEEECCCCCCHHHCCC----CHH T ss_conf 99788899989--71-9999999999986---9939998184784688---9788788898289886332115----999 Q ss_pred HHHHHCCCCCCCEEEEECHHHH---HHHHHHHHHHHCCCCCCEEEECCCC Q ss_conf 9986100128886898511776---5799998663013463111100221 Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPDF---THRVAKRVRKKMPNLPIINYVCPSV 125 (383) Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pgF---nl~lak~lkk~~~~ipvi~yv~Pqv 125 (383) .+.+.+++.++|+|.- --|| |-.+|+.+.+. ||. +|.|+. T Consensus 68 ~i~~~a~~~~~~ai~p--gygflsen~~~a~~~~~~--gi~---~iGp~~ 110 (1150) T 3hbl_A 68 RIIDVAKQANVDAIHP--GYGFLSENEQFARRCAEE--GIK---FIGPHL 110 (1150) T ss_dssp HHHHHHHHTTCSEEEC--TTTTSTTCHHHHHHHHHT--TCE---ESSSCH T ss_pred HHHHHHHHHCCCEEEC--CCCCCCCCHHHHHHHHHC--CCE---EECCCH T ss_conf 9999999979299965--844032499999999987--997---989699 No 353 >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; 2.60A {Homo sapiens} Probab=21.13 E-value=34 Score=13.21 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=28.8 Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 9998610012888689851177657999986630134631111 Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) ..+.+.+.+.++.++|++.+..---.|++.|++. |+++..+ T Consensus 44 ~~L~~~l~~~~~kvlIF~~~~~~~~~l~~~L~~~--g~~~~~i 84 (191) T 2p6n_A 44 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK--GVEAVAI 84 (191) T ss_dssp HHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHH--TCCEEEE T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHC--CCCEEEE T ss_conf 9999998448999999989999999999999878--9979999 No 354 >3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Probab=21.01 E-value=34 Score=13.20 Aligned_cols=41 Identities=15% Similarity=0.273 Sum_probs=21.3 Q ss_pred HHHHHCCCCCCCEEEEECHHHHHHHHHHH--HHHHCCCCCCEEEE Q ss_conf 99861001288868985117765799998--66301346311110 Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPDFTHRVAKR--VRKKMPNLPIINYV 121 (383) Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pgFnl~lak~--lkk~~~~ipvi~yv 121 (383) .+.+.+.+.+.++++..-+..-..-++.. +.+ .++|.+.+. T Consensus 64 ~~~~li~~~~v~aiig~~~s~~~~a~~~~~~~~~--~~vp~i~~~ 106 (364) T 3lop_A 64 NVRDMARVDNPVALLTVVGTANVEALMREGVLAE--ARLPLVGPA 106 (364) T ss_dssp HHHHHHHHSCEEEEECCCCHHHHHHHHHTTHHHH--HTCCEESCS T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH--CCCCCCCCC T ss_conf 9999996399679997888612455677888886--188644676 No 355 >3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* Probab=20.96 E-value=34 Score=13.19 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=29.6 Q ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCC Q ss_conf 128886898511776579999866301346311110022 Q gi|254780767|r 86 SSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPS 124 (383) Q Consensus 86 ~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~Pq 124 (383) +.+.++||+-.+.+-...++..+... +||+|-+.+.. T Consensus 69 ~~~V~aviGp~~s~~~~~v~~~~~~~--~iP~Is~~~~~ 105 (395) T 3h6g_A 69 SLGVAAIFGPSHSSSANAVQSICNAL--GVPHIQTRWKH 105 (395) T ss_dssp HHCCSCEECCSSHHHHHHHHHHHHHT--TCCEEECSCCC T ss_pred HCCCEEEECCCCCHHHHHHHHHHHHC--CEEEEECCCCC T ss_conf 66976999889828899999998633--46674046787 No 356 >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reductase family; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus HB8} Probab=20.95 E-value=34 Score=13.19 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=24.9 Q ss_pred CCCCE-EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 98745-99997682147899999999997389983999971 Q gi|254780767|r 1 MNSLK-IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 1 m~~mk-i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) |..|| .-+++|-.|| .|..+.+.|-++ + .++..++ T Consensus 1 M~~mk~~VlITGas~G--IG~a~a~~la~~-G--~~V~~~~ 36 (234) T 2ehd_A 1 MEGMKGAVLITGASRG--IGEATARLLHAK-G--YRVGLMA 36 (234) T ss_dssp ---CCCEEEESSTTSH--HHHHHHHHHHHT-T--CEEEEEE T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHC-C--CEEEEEE T ss_conf 9999988999776749--999999999987-9--9999998 No 357 >2qyt_A 2-dehydropantoate 2-reductase; APC81190, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Porphyromonas gingivalis W83} Probab=20.95 E-value=34 Score=13.19 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=37.2 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHH---HHH-CCCEEEECHHH Q ss_conf 874599997682147899999999997389983999971-789---994-78806504445 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG-GPS---LQK-EGLVSLFDFSE 57 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG-G~~---m~~-~G~~~~~~~~~ 57 (383) ++|||.|+-..+=|-.+|+.|.++-... +...++.-+. |++ |++ .|+....+-.+ T Consensus 7 ~~MkI~IlGaGaiG~~~a~~L~~~g~~~-~~~~~Vt~i~R~~~~~ai~~~~gl~i~~~~~~ 66 (317) T 2qyt_A 7 QPIKIAVFGLGGVGGYYGAMLALRAAAT-DGLLEVSWIARGAHLEAIRAAGGLRVVTPSRD 66 (317) T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHT-TSSEEEEEECCHHHHHHHHHHTSEEEECSSCE T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCC-CCCEEEEEEEEHHHHHHHHHCCCEEEEECCCC T ss_conf 9998999996899999999999859988-87516799922899999997699799968974 No 358 >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} Probab=20.92 E-value=34 Score=13.18 Aligned_cols=47 Identities=30% Similarity=0.268 Sum_probs=31.6 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH---HHHCCCEEEEC Q ss_conf 9874599997682147899999999997389983999971789---99478806504 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPS---LQKEGLVSLFD 54 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~---m~~~G~~~~~~ 54 (383) |+ |||.|+-..+=|=.+|+.|- + ..++.++.-.|++ +++.|+...-+ T Consensus 1 m~-MkI~IiGaGaiG~~~a~~L~----~--~~~V~l~~r~~~~~~~i~~~Gl~~~~~ 50 (307) T 3ego_A 1 MS-LKIGIIGGGSVGLLCAYYLS----L--YHDVTVVTRRQEQAAAIQSEGIRLYKG 50 (307) T ss_dssp -C-CEEEEECCSHHHHHHHHHHH----T--TSEEEEECSCHHHHHHHHHHCEEEEET T ss_pred CC-CEEEEECCCHHHHHHHHHHH----C--CCCEEEEECCHHHHHHHHHCCEEEEEC T ss_conf 99-88999996599999999997----7--298799988889999999779099309 No 359 >1o1x_A Ribose-5-phosphate isomerase RPIB; TM1080, structural genomics, JCSG, PSI, protein structure initiative; 1.90A {Thermotoga maritima} SCOP: c.121.1.1 Probab=20.92 E-value=34 Score=13.18 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=19.8 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 874599997682147899999999997389983999971 Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) .+|||+|.+ .++|--+--.|.+.|+++ +.++.-+| T Consensus 11 ~~MKI~igs-DHaG~~lK~~l~~~L~~~---g~ev~D~G 45 (155) T 1o1x_A 11 HHVKIAIAS-DHAAFELKEKVKNYLLGK---GIEVEDHG 45 (155) T ss_dssp CCCEEEEEE-CSTTHHHHHHHHHHHHHT---TCEEEECC T ss_pred CCEEEEEEE-CCHHHHHHHHHHHHHHHC---CCEEEECC T ss_conf 763999974-871799999999999987---99899789 No 360 >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Probab=20.75 E-value=34 Score=13.16 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=24.9 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 4599997682147899999999997389983999971 Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383) Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383) ||+.+++|-.|| .|..+.+.|-+. + .++...+ T Consensus 1 mKVvlVTGas~G--IG~aiA~~la~~-G--a~V~i~~ 32 (255) T 2dkn_A 1 MSVIAITGSASG--IGAALKELLARA-G--HTVIGID 32 (255) T ss_dssp -CEEEEETTTSH--HHHHHHHHHHHT-T--CEEEEEE T ss_pred CCEEEEECCCCH--HHHHHHHHHHHC-C--CEEEEEE T ss_conf 949999488779--999999999987-9--9999997 No 361 >2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A* Probab=20.70 E-value=35 Score=13.15 Aligned_cols=34 Identities=6% Similarity=0.264 Sum_probs=26.7 Q ss_pred CCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 2888689851177657999986630134631111 Q gi|254780767|r 87 SKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383) Q Consensus 87 ~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383) .+||+||.+--=|.-|+.++.+.....++|++=. T Consensus 34 ~~~Dlvi~iGGDGT~L~a~~~~~~~~~~~PvlGi 67 (272) T 2i2c_A 34 VEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGI 67 (272) T ss_dssp SSCSEEEEEESHHHHHHHHHHTGGGTTTCEEEEE T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 8999999989709999999987631799829998 No 362 >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 Probab=20.70 E-value=35 Score=13.15 Aligned_cols=76 Identities=16% Similarity=0.360 Sum_probs=43.9 Q ss_pred EEECCHHHHHCCCEEEECHHHCCEEEHHHH--HHHHHHHHHHHHHHHHHCCCCCCCEEEEE---CHHHHHHHHHHHHHHH Q ss_conf 997178999478806504445311013674--66459999999999861001288868985---1177657999986630 Q gi|254780767|r 37 VGVGGPSLQKEGLVSLFDFSELSVIGIMQV--VRHLPQFIFRINQTVELIVSSKPDVLLIV---DNPDFTHRVAKRVRKK 111 (383) Q Consensus 37 ~giGG~~m~~~G~~~~~~~~~l~v~G~~ev--l~~~~~~~~~~~~~~~~i~~~~Pd~vi~i---D~pgFnl~lak~lkk~ 111 (383) .++--|.++=+|.-..++.+.++++|-.|. +.++..= ..++..+.+.+.+|-++|+- .-|..-+.+|+. T Consensus 29 ~~i~RpGl~L~G~~~~~~~~RIqi~G~~E~~Yl~~l~~e--~r~~~~~~~~~~~~p~iIvt~~~~~~~~l~~~a~~---- 102 (314) T 1ko7_A 29 TDISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDE--ERKGRMRKLCRPETPAIIVTRDLEPPEELIEAAKE---- 102 (314) T ss_dssp SCEECCHHHHTTCCTTCCTTSEEEECHHHHHHHHHSCHH--HHTTHHHHHCCTTCCCEEECTTCCCCHHHHHHHHH---- T ss_pred CCCCCHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCHH--HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH---- T ss_conf 566767687565665668975999858999999868999--99999999836698789998999999999999998---- Q ss_pred CCCCCCEE Q ss_conf 13463111 Q gi|254780767|r 112 MPNLPIIN 119 (383) Q Consensus 112 ~~~ipvi~ 119 (383) .++|++. T Consensus 103 -~~ipll~ 109 (314) T 1ko7_A 103 -HETPLIT 109 (314) T ss_dssp -TTCCEEE T ss_pred -HCCEEEE T ss_conf -3974998 No 363 >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Probab=20.67 E-value=35 Score=13.15 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=20.7 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH Q ss_conf 599997682147899999999997389983999971789 Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPS 43 (383) Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~ 43 (383) |+.+++|-.|| .|..+.+.|-+. +.++-+.+.-.+. T Consensus 14 KvalVTGas~G--IG~aia~~la~~-Ga~V~i~~r~~~~ 49 (267) T 1iy8_A 14 RVVLITGGGSG--LGRATAVRLAAE-GAKLSLVDVSSEG 49 (267) T ss_dssp CEEEEETTTSH--HHHHHHHHHHHT-TCEEEEEESCHHH T ss_pred CEEEEECCCCH--HHHHHHHHHHHC-CCEEEEEECCHHH T ss_conf 98999378878--999999999987-9989999788888 No 364 >2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm, magnesium, GMP complex, FLIP peptide-plane, glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces cerevisiae} PDB: 2jkz_A* Probab=20.67 E-value=35 Score=13.15 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=25.6 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHHHH--HHHHHHH Q ss_conf 999999998610012888689851177657--9999866 Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIVDNPDFTH--RVAKRVR 109 (383) Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl--~lak~lk 109 (383) +-+...++.+.|..++||++|+|--.|+-. .|+..|+ T Consensus 13 i~~~~~~La~~I~~~~pD~IVgI~rGG~i~A~~ls~~L~ 51 (213) T 2jky_A 13 VHQLCQVSAERIKNFKPDLIIAIGGGGFIPARILRTFLK 51 (213) T ss_dssp HHHHHHTTHHHHHHHCCSEEEECSGGGHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHC T ss_conf 999999999997588999999989888999999999852 No 365 >2qip_A Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633} Probab=20.53 E-value=35 Score=13.13 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=11.3 Q ss_pred CCCCCCEEEEECHHHH Q ss_conf 0128886898511776 Q gi|254780767|r 85 VSSKPDVLLIVDNPDF 100 (383) Q Consensus 85 ~~~~Pd~vi~iD~pgF 100 (383) .+.++.+.|+||+.-+ T Consensus 6 ~~~~~rvaIfID~~Nl 21 (165) T 2qip_A 6 SDHKEKIAILVDVQNV 21 (165) T ss_dssp CCCCEEEEEEEEHHHH T ss_pred CCCCCEEEEEEEHHHH T ss_conf 7887709999956768 No 366 >3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus} Probab=20.52 E-value=35 Score=13.13 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=6.4 Q ss_pred HHHHHHCCCCCCCEEEE Q ss_conf 99986100128886898 Q gi|254780767|r 78 NQTVELIVSSKPDVLLI 94 (383) Q Consensus 78 ~~~~~~i~~~~Pd~vi~ 94 (383) +.+.+.|...+||+|++ T Consensus 135 ~~l~~~i~~~~Pd~v~t 151 (270) T 3dfi_A 135 EDIESMIAECDPTLVLT 151 (270) T ss_dssp HHHHHHHHHHCCSEEEE T ss_pred HHHHHHHHHCCCCEEEC T ss_conf 99999998549978978 No 367 >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum tls} SCOP: c.2.1.2 Probab=20.49 E-value=35 Score=13.12 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=19.7 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 98745999976821478999999999973 Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEM 29 (383) Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~ 29 (383) |+ |+.+++|-.|| .|..+.+.|-+. T Consensus 1 Mk--KV~lITGas~G--IG~aiA~~la~~ 25 (244) T 2bd0_A 1 MK--HILLITGAGKG--IGRAIALEFARA 25 (244) T ss_dssp -C--EEEEEETTTSH--HHHHHHHHHHHH T ss_pred CC--CEEEEECCCCH--HHHHHHHHHHHH T ss_conf 99--88999358868--999999999983 Done!