RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase
[Candidatus Liberibacter asiaticus str. psy62]
(383 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.5 bits (105), Expect = 4e-05
Identities = 73/384 (19%), Positives = 126/384 (32%), Gaps = 143/384 (37%)
Query: 18 LAGDLIKS----LKEMVS--------YP--INLVG-VGGPSLQ--KEGLVSLFDFSELS- 59
L GDLIK L E++ + +N++ + PS K+ L+S +S
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS----IPISC 238
Query: 60 -VIGIMQVVRHL---------P-QFIFRI------NQTVELIVSSKPDVLLIVDNPD-FT 101
+IG++Q+ ++ P + + +Q + + + + D+ + F
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL--VTAV---AIAETDSWESF- 292
Query: 102 HRVAKR---------VRKKM--PN--LPIINYVCPSV----WAWREGRARKMC------- 137
++ VR PN LP PS+ EG M
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLP------PSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 138 ----AYINQVISILPFEKEVMQRLGGPPTTFV--GHPLS--SSPSILEVYSQRNKQRNTP 189
Y+N+ S LP K+V L V G P S L + ++ K +
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG----LNLTLRKAKAPSGL 402
Query: 190 SQWKKILLLPGS-RAQEI-YKILPFFESAVASLVKRNPFFRFSLVTVSSQ--ENLVRCIV 245
Q +I P S R + + LP VAS PF LV S ++LV+
Sbjct: 403 DQ-SRI---PFSERKLKFSNRFLP-----VAS-----PFHSHLLVPASDLINKDLVK--- 445
Query: 246 SKWDISPEIIIDKEQ-KKQVFMTCNAA-MAASGTVILEL---ALCGIPVVSIYKSEWIVN 300
+ + + + V+ T + + + I E + +PV
Sbjct: 446 ------NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK---------- 489
Query: 301 FFIFYIKTWTCALPNL----IVDY 320
W I+D+
Sbjct: 490 --------WETTT-QFKATHILDF 504
Score = 44.2 bits (104), Expect = 5e-05
Identities = 36/210 (17%), Positives = 62/210 (29%), Gaps = 72/210 (34%)
Query: 58 LSVIG---------IMQVVRHLPQ----FIFRINQTVELIVSSKPDVLLIVDNPDFTHRV 104
LS+ + + HLP I +N L+VS P L + +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL---------YGL 389
Query: 105 AKRVRK-KMPNLPIINYVCPSVWAWREGRARKMCAYINQVISI-LPF--------EKEVM 154
+RK K P+ + + P RK+ + N+ + + PF +
Sbjct: 390 NLTLRKAKAPSGLDQSRI-PF-------SERKL-KFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 155 QRLGGPPTTFVGHPLSSSPSILEVYSQRNKQ--RN-----TPS----------QWKKILL 197
+ L +F + P VY + R + +W+
Sbjct: 441 KDLVKNNVSFNAKDIQI-P----VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 198 LPGSRAQEIYKILPF---FESAVASLVKRN 224
+ IL F S + L RN
Sbjct: 496 FKATH------ILDFGPGGASGLGVLTHRN 519
Score = 29.1 bits (65), Expect = 1.6
Identities = 34/207 (16%), Positives = 60/207 (28%), Gaps = 96/207 (46%)
Query: 49 LVSLFD--------FSEL--------SVIG--IMQVVRHLPQFIFRINQTVELIVSSKPD 90
LV++F F EL ++G I L + I R E + + +
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI-RTTLDAEKVFTQGLN 214
Query: 91 VLLIVDNPDFTHRVAKRVRKKMPN----------LPIINYVCPSVWAWREGRARKMCAYI 140
+L ++NP T P+ P+I + ++ Y+
Sbjct: 215 ILEWLENPSNT-----------PDKDYLLSIPISCPLIGVI-------------QLAHYV 250
Query: 141 --NQVISILPFEKEVMQRLGGPPTTFVGHP--------LSSSPSILEVYSQRNKQRNTPS 190
+++ P E+ L G T GH ++ + S
Sbjct: 251 VTAKLLGFTP--GELRSYLKG--AT--GHSQGLVTAVAIAETDS---------------- 288
Query: 191 QWK----------KILLLPGSRAQEIY 207
W+ +L G R E Y
Sbjct: 289 -WESFFVSVRKAITVLFFIGVRCYEAY 314
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 37.1 bits (85), Expect = 0.006
Identities = 38/324 (11%), Positives = 93/324 (28%), Gaps = 47/324 (14%)
Query: 54 DFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMP 113
+ + +++ R + + I+ + + +A K+
Sbjct: 51 AYDKTLDYEVIRWPRSVMLPTPTTAHAMAEIIREREIDNVWFGAAAPLALMAGTA-KQAG 109
Query: 114 NLPII-----NYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFV--- 165
+I + V S+ RK+ ++ + I + + G TF
Sbjct: 110 ASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLP 169
Query: 166 -GHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRN 224
G + +++ + ++ K A+ ++
Sbjct: 170 SGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRL--VPRKGQDSLIKAMPQVIAAR 227
Query: 225 PFFRFSLVTVSSQENLVRCIVSKWDISPEII--IDKEQKKQVFMTCNAAMAAS------- 275
P + +V E+ +R + + + + + ++ + + +
Sbjct: 228 PDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGL 287
Query: 276 -----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVD-YPLVPEYFNS 329
G V LE CG+PV++ + P + LV E +
Sbjct: 288 DVEGLGIVYLEAQACGVPVIA----------------GTSGGAPETVTPATGLVVEGSD- 330
Query: 330 MIRSEALVRWIERLSQDTLQRRAM 353
+ L + L D ++R AM
Sbjct: 331 ---VDKLSELLIELLDDPIRRAAM 351
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 33.7 bits (76), Expect = 0.072
Identities = 33/269 (12%), Positives = 76/269 (28%), Gaps = 31/269 (11%)
Query: 41 GPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF 100
+ + L S F + + F R N+T+ + +K D+ + +
Sbjct: 88 DATPNPKDLQSFKSFKYVMPEEDKDFALQIVPFNDRYNRTIPV---AKHDIFIATAW--W 142
Query: 101 THRVAKRVRKKMPNLPIINYV---------CPSVWAWREGRARKMCAY----INQVISIL 147
T A+R+ + I P + W Y +
Sbjct: 143 TAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVFNS 202
Query: 148 PFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIY 207
K+ G T + + N Q +KI+L+ G + +
Sbjct: 203 ELLKQYFNNKGYNFTDEYFFQPK-------INTTLKNYINDKRQKEKIILVYGRPSVK-R 254
Query: 208 KILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMT 267
A+ V++ + +++ + ++ + E +
Sbjct: 255 NAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKDIALGKGIHLNSLGKLTLEDYADLLKR 314
Query: 268 CNAAMAAS-----GTVILELALCGIPVVS 291
+ ++ LE+A G+ V++
Sbjct: 315 SSIGISLMISPHPSYPPLEMAHFGLRVIT 343
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center
for structural genomics of infec diseases, csgid, alpha
beta; HET: PGE; 2.20A {Listeria monocytogenes}
Length = 403
Score = 33.6 bits (76), Expect = 0.077
Identities = 29/226 (12%), Positives = 62/226 (27%), Gaps = 12/226 (5%)
Query: 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWR-----EG 131
+N E+I + PD++L+ + + + L W E
Sbjct: 103 MNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKML-GHVEAGLRTWNKYSPFPEEM 161
Query: 132 RARKMCAYINQVISILPFEKEVMQRLGGPPTT--FVGHPLSSSPSILEVYSQRNKQRNTP 189
+ + S KE + G P T G+ + +
Sbjct: 162 NRQLTGVMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENL 221
Query: 190 SQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWD 249
+++L+ R + + + + AV +V+ + + +
Sbjct: 222 GD-NRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGG 280
Query: 250 ISPEIIIDKEQKKQV---FMTCNAAMAASGTVILELALCGIPVVSI 292
+I+ SG V E G+PV+ +
Sbjct: 281 HERIHLIEPLDAIDFHNFLRKSYLVFTDSGGVQEEAPGMGVPVLVL 326
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 32.4 bits (72), Expect = 0.19
Identities = 18/225 (8%), Positives = 53/225 (23%)
Query: 68 RHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWA 127
+ F ++ P + + + + +K L I +Y
Sbjct: 26 KQYSDVSFACLPLEGSLIDEIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDE 85
Query: 128 WREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRN 187
+ ++ + + + +S +
Sbjct: 86 KLIKLETGVKILSFDDEIKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREE 145
Query: 188 TPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSK 247
+ K+ + S + + S+ +K
Sbjct: 146 FYQEAKENRKKKYDFFICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAK 205
Query: 248 WDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSI 292
+ + ID E ++ N + ++ +++ E L +I
Sbjct: 206 LHNNIRLFIDHENIAKLMNESNKLIISASSLVNEALLLKANFKAI 250
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan,
membrane-associated proteins; 1.90A {Xanthomonas
campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Length = 406
Score = 30.6 bits (68), Expect = 0.61
Identities = 31/314 (9%), Positives = 74/314 (23%), Gaps = 60/314 (19%)
Query: 68 RHLPQFIFR--INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSV 125
R + +FR + ++ + +IV + ++ P ++ +
Sbjct: 100 RPVEDAMFRWYAAHPPKQLLDWMRESDVIVFESGIAVAFIELAKRVNPAAKLVYRASDGL 159
Query: 126 WAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQ 185
I V L SP++ R+
Sbjct: 160 STINVASY------------IEREFDRVAPTLD--------VIALVSPAMAAEVVSRDNV 199
Query: 186 RNTPSQWKKILLLPGSRAQEIYKI-------LPFFESAVASLVKRNPFFRFSLV--TVSS 236
+ L G + I + F K P F ++ +
Sbjct: 200 FHVGHGVDHNLDQLGDPSPYAEGIHAVAVGSMLFDPEFFVVASKAFPQVTFHVIGSGMGR 259
Query: 237 QENLVRCIVSKWDISPEIIIDKEQKKQVFM------TCNAAMAASGTVILELALCGIPVV 290
++ ++ I + + + +A S +L+ G+P V
Sbjct: 260 HPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAV 319
Query: 291 SIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQR 350
P +++++ I + + R
Sbjct: 320 C----------------PNAVVGPYKSRF--GYTPG-----NADSVIAAITQALEAPRVR 356
Query: 351 RAMLHGFENLWDRM 364
+ + DR+
Sbjct: 357 YRQCLNWSDTTDRV 370
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold,
closed-form, ADP and glucose binding, glycogen
biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli}
PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Length = 485
Score = 30.1 bits (66), Expect = 0.78
Identities = 25/202 (12%), Positives = 48/202 (23%), Gaps = 41/202 (20%)
Query: 185 QRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCI 244
K L SR + A+ L+++ +
Sbjct: 283 AMGLKVDDKVPLFAVVSRLTSQKGL-DLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAA 341
Query: 245 VSKWDISPEIIIDKEQKKQVFMTCNAAMAAS-------GTVILELALCGIPVVSIYKSEW 297
+++ + I + + A + G L G +
Sbjct: 342 AAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLV------ 395
Query: 298 IVNFFIFYIKTWTCALPNLIVD---YPLVPEYFNSMI----RSEALVRWIERLSQD---- 346
T L + + D L + + + +L+R I R
Sbjct: 396 ----------RRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRP 445
Query: 347 ----TLQRRAMLHGFENLWDRM 364
+QR+AM F W
Sbjct: 446 SLWRFVQRQAMAMDFS--WQVA 465
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xmp_A*
Length = 416
Score = 30.2 bits (68), Expect = 0.83
Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 45/181 (24%)
Query: 193 KKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQ---------ENLVRC 243
K I+ +K + + ++ P + LV V + E +R
Sbjct: 231 KPIITQVSRFDP--WKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRK 288
Query: 244 IVSKWDISPEIIIDKEQKKQV--------FMTCNAAMAASGTVILELALCGIPVVSIYKS 295
I +D+ + ++V + + G + E G PV+
Sbjct: 289 IGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIG---- 344
Query: 296 EWIVNFFIFYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRA 352
+ IVD LV + V + L + +
Sbjct: 345 ------------RAVGGIKFQIVDGETGFLVRDA-------NEAVEVVLYLLKHPEVSKE 385
Query: 353 M 353
M
Sbjct: 386 M 386
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A
{Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Length = 326
Score = 28.9 bits (63), Expect = 2.1
Identities = 15/187 (8%), Positives = 44/187 (23%), Gaps = 2/187 (1%)
Query: 107 RVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVG 166
+ K + + + W+ R + N+ I + V + +
Sbjct: 95 GLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNRKHHIAKQQHAVERTRELFAKSLGY 154
Query: 167 HPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPF 226
+ + + L + + + + + L
Sbjct: 155 SKPQTQGDYAIAQHFLTNLPTDAG--EYAVFLHATTRDDKHWPEEHWRELIGLLADSGIR 212
Query: 227 FRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCG 286
+ +E R + + E +V ++ + A
Sbjct: 213 IKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALD 272
Query: 287 IPVVSIY 293
P +++Y
Sbjct: 273 RPNITVY 279
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
function, ribonuclease D, exonuclease; 2.10A
{Bifidobacterium adolescentis ATCC15703}
Length = 440
Score = 28.5 bits (63), Expect = 2.8
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 109 RKKMPNLPIINYVCPSVWAWREGRARKM---CAYI--NQVI----SILPFEKEVMQRLGG 159
++ + ++W R+ AR+ + + I P + +
Sbjct: 224 ITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRS 283
Query: 160 PPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKIL 196
H S + E Y+ ++ PS WK I+
Sbjct: 284 INERVRIHTDSEQDKMFERYAPIQRKI-KPSMWKNII 319
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis}
Length = 394
Score = 27.8 bits (60), Expect = 3.7
Identities = 28/302 (9%), Positives = 68/302 (22%), Gaps = 35/302 (11%)
Query: 66 VVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSV 125
V ++ P + ++ E+ D+L + + + I+ + +
Sbjct: 77 VFQYPPYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTD 136
Query: 126 WAWREGRA------RKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVY 179
R + V ++ L P +
Sbjct: 137 ITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKR 196
Query: 180 SQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQEN 239
++ + +L+ S K
Sbjct: 197 DMTQLKKEYGISESEKILIHISN-----------------FRKVKRVQDVVQAFAKIVTE 239
Query: 240 LVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIV 299
+ ++ D I + K + V LA+ +
Sbjct: 240 VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLM----LLLSEKE 295
Query: 300 NFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIR--------SEALVRWIERLSQDTLQRR 351
+F + ++ C +P + +PE + + +L +D R
Sbjct: 296 SFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHR 355
Query: 352 AM 353
M
Sbjct: 356 NM 357
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics,
infectious diseases, isomerase; 2.35A {Vibrio cholerae}
Length = 396
Score = 28.0 bits (61), Expect = 4.2
Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 193 KKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISP 252
KK+L++ G+R E K+ P + + ++ F + ++ ++ + I+P
Sbjct: 26 KKVLIVFGTRP-EAIKMAP-----LVQQLCQDNRFVAKVCVTGQHREMLDQVLELFSITP 79
Query: 253 EIIIDKEQKKQ 263
+ ++ + Q
Sbjct: 80 DFDLNIMEPGQ 90
>3fkj_A Putative phosphosugar isomerases; NP_459564.1, structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
2.12A {Salmonella typhimurium LT2}
Length = 347
Score = 27.8 bits (61), Expect = 4.6
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 249 DISPEIIIDKEQKKQVFMTC----NAAMAASGTVILELALCGIPVVSIYKSE 296
I +I+ + ++ F+ C L+ + V I +E
Sbjct: 29 RIISDILGKQNIERVWFVGCGGSLTGFWPGK--YFLDCEASKLAVGYITSNE 78
>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase
homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}
Length = 288
Score = 27.6 bits (60), Expect = 5.0
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 119 NYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHP 168
Y VW W + A IN+ +S EK + G P
Sbjct: 5 TYQPAKVWTWDKSAGGAF-ANINRPVSGPTHEKTLPV--GKHPLQLYSLG 51
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann
fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium
tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Length = 485
Score = 27.3 bits (59), Expect = 5.4
Identities = 14/115 (12%), Positives = 28/115 (24%), Gaps = 33/115 (28%)
Query: 265 FMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDY---P 321
+ + G L G V T L + ++D
Sbjct: 368 AIIIPSRFEPCGLTQLYALRYGCIPVV----------------ARTGGLADTVIDANHAA 411
Query: 322 LVPEYFNSMI----RSEALVRWIERLSQD--------TLQRRAMLHGFENLWDRM 364
L + + + L + I R + +Q+ M W++
Sbjct: 412 LASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVS--WEKS 464
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 27.4 bits (60), Expect = 6.3
Identities = 12/110 (10%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 280 LELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSM------IRS 333
L+ + + + ++ VN +K++ LP+ +V Y + + + +
Sbjct: 102 LQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKL 161
Query: 334 EALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVLG 383
AL +++ ++ + + ++++ M +E +
Sbjct: 162 HALKEVLKKFPKEN---HEVFKYVISHLNKVSHNNKVNLMTSENLSICFW 208
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/proteomics
initiative, RSGI, structural genomics; 1.70A {Thermus
thermophilus} SCOP: c.46.1.2 c.46.1.2
Length = 285
Score = 26.9 bits (58), Expect = 7.0
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 237 QENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYK-- 294
+ + + + I K+ K + + C A +S + + L G P V Y
Sbjct: 211 PDGTFKSAEELRALYEPLGITKD--KDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGS 268
Query: 295 -SEW 297
+EW
Sbjct: 269 WTEW 272
>3g68_A Putative phosphosugar isomerase; YP_001089791.1, SIS domain,
double-SIS domain protein, structural genomics; HET: MSE
CIT; 1.80A {Clostridium difficile 630}
Length = 352
Score = 26.9 bits (58), Expect = 7.5
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 8/81 (9%)
Query: 237 QENLVRCIVSKWDISPEIIIDKEQKKQVFMTC----NAAMAASGTVILELALCGIPVVSI 292
+R I+S D + KK + ++ + L+ L I VV +
Sbjct: 11 TPVRMREIISNADSLFNEVKRTNLKKIIITGSGTSYHSGVQVQP--YLQ-NLLDIDVVKM 67
Query: 293 YKSEWIVN-FFIFYIKTWTCA 312
Y + F T
Sbjct: 68 YPFMITEDTFKFDNENTLVVG 88
>1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase,
cell WALL, antibiotic resistance, membrane, plasmid;
HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP:
c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Length = 343
Score = 26.7 bits (58), Expect = 8.5
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 1 MNSLKIAVIAGEISGD-----LLAGDLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLF 53
MN +K+A++ G S + A ++ ++ + Y +G+ G E + +
Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKE-KYEPLYIGITKSGVWKMCEKPCAEW 59
Query: 54 DFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIV 95
+E ++ + + + + N E+ + DV
Sbjct: 60 -ENENCYSAVLSPDKKMHGLLVKKNHEYEI---NHVDVAFSA 97
>2qah_A 2-pyrone-4,6-dicarboxylic acid hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Sphingomonas
paucimobilis}
Length = 303
Score = 26.9 bits (58), Expect = 9.2
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 297 WIVNFFIFYIKTWTCALPNLIV---DYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAM 353
+ F + + ++ D+P P +++ +V I R++ + M
Sbjct: 223 PPWDDFARSVAPLVADYADRVIWGTDWP-HPNMQDAIPDDGLVVDMIPRIAPTPELQHKM 281
Query: 354 LHG 356
L
Sbjct: 282 LVT 284
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.138 0.415
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,396,980
Number of extensions: 160189
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 31
Length of query: 383
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 289
Effective length of database: 3,414,294
Effective search space: 986730966
Effective search space used: 986730966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.2 bits)