HHsearch alignment for GI: 254780768 and conserved domain: pfam06230
>pfam06230 DUF1009 Protein of unknown function (DUF1009). Family of uncharacterized bacterial proteins.
Probab=100.00 E-value=0 Score=490.66 Aligned_cols=212 Identities=42% Similarity=0.661 Sum_probs=202.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHH
Q ss_conf 99999999864954067702423210001110260357899999987510480358999999999769748211222524
Q gi|254780768|r 54 FCVLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPE 133 (281)
Q Consensus 54 ig~li~~Lk~~~i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ 133 (281)
T Consensus 1 igkii~~Lk~~~i~~ivm~G~v-~rp~~~~~~~D~~~~~ll~~~--~~~~~gDd~lL~~i~~~fe~~G~~vi~~~~~l~~ 77 (212)
T pfam06230 1 LGKLIKLLKAEGVTEVVMAGAV-KRPAFSPLRPDLRTLRLLPRL--AALRRGDDALLRAVIREFEEEGFKVVGAHEVAPD 77 (212)
T ss_pred CHHHHHHHHHCCCCEEEEECCE-ECCCCCCCCCCHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHCCCEEECHHHHHHH
T ss_conf 9789999998799989996253-578863438699999988762--6753597889999999999879899757896298
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 20354334554653234788998999999733267225999819748896253421799999997543123456677189
Q gi|254780768|r 134 LLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGRVVALEGIEGTDSMLQRIVDCRNNGRILAGKSGVL 213 (281)
Q Consensus 134 ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD~mi~R~~~~~~~~~~~~~~~~il 213 (281)
T Consensus 78 ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVV~~g~VlavEa~EGTD~mI~R~~~l~~~------~~~vl 151 (212)
T pfam06230 78 LLAPEGVLTRRAPDKSELADIARGAEVAKALGALDIGQAVVVKDGAVLAVEAIEGTDAMLRRVGELRRG------RGGVL 151 (212)
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCHHHHHHHHHHHCCC------CCEEE
T ss_conf 644667525789898999999999999999734687416999899899995530689999999974568------88089
Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEE
Q ss_conf 9934888753121066279999999984990999973977998589999999987968999
Q gi|254780768|r 214 VKMCKSQQDMRADLPSIGAKTVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274 (281)
Q Consensus 214 vK~~K~~QD~r~DlP~IG~~Ti~~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~g 274 (281)
T Consensus 152 vK~~K~~QD~R~DlPtIG~~Ti~~~~~ag~~giavea~~~li~d~~~~i~~A~~~~i~i~G 212 (212)
T pfam06230 152 VKAPKPGQDLRFDLPTIGPDTIETAAEAGLAGIAVEAGKTLVLDREAVIAAADAAGLFVVG 212 (212)
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEC
T ss_conf 8577878631247777489999999983995999966987998699999999983989959