HHsearch alignment for GI: 254780768 and conserved domain: pfam06230

>pfam06230 DUF1009 Protein of unknown function (DUF1009). Family of uncharacterized bacterial proteins.
Probab=100.00  E-value=0  Score=490.66  Aligned_cols=212  Identities=42%  Similarity=0.661  Sum_probs=202.4

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHH
Q ss_conf             99999999864954067702423210001110260357899999987510480358999999999769748211222524
Q gi|254780768|r   54 FCVLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPE  133 (281)
Q Consensus        54 ig~li~~Lk~~~i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~  133 (281)
T Consensus         1 igkii~~Lk~~~i~~ivm~G~v-~rp~~~~~~~D~~~~~ll~~~--~~~~~gDd~lL~~i~~~fe~~G~~vi~~~~~l~~   77 (212)
T pfam06230         1 LGKLIKLLKAEGVTEVVMAGAV-KRPAFSPLRPDLRTLRLLPRL--AALRRGDDALLRAVIREFEEEGFKVVGAHEVAPD   77 (212)
T ss_pred             CHHHHHHHHHCCCCEEEEECCE-ECCCCCCCCCCHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHCCCEEECHHHHHHH
T ss_conf             9789999998799989996253-578863438699999988762--6753597889999999999879899757896298


Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             20354334554653234788998999999733267225999819748896253421799999997543123456677189
Q gi|254780768|r  134 LLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGRVVALEGIEGTDSMLQRIVDCRNNGRILAGKSGVL  213 (281)
Q Consensus       134 ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD~mi~R~~~~~~~~~~~~~~~~il  213 (281)
T Consensus        78 ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVV~~g~VlavEa~EGTD~mI~R~~~l~~~------~~~vl  151 (212)
T pfam06230        78 LLAPEGVLTRRAPDKSELADIARGAEVAKALGALDIGQAVVVKDGAVLAVEAIEGTDAMLRRVGELRRG------RGGVL  151 (212)
T ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCHHHHHHHHHHHCCC------CCEEE
T ss_conf             644667525789898999999999999999734687416999899899995530689999999974568------88089


Q ss_pred             EEECCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEE
Q ss_conf             9934888753121066279999999984990999973977998589999999987968999
Q gi|254780768|r  214 VKMCKSQQDMRADLPSIGAKTVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG  274 (281)
Q Consensus       214 vK~~K~~QD~r~DlP~IG~~Ti~~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~g  274 (281)
T Consensus       152 vK~~K~~QD~R~DlPtIG~~Ti~~~~~ag~~giavea~~~li~d~~~~i~~A~~~~i~i~G  212 (212)
T pfam06230       152 VKAPKPGQDLRFDLPTIGPDTIETAAEAGLAGIAVEAGKTLVLDREAVIAAADAAGLFVVG  212 (212)
T ss_pred             EECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEC
T ss_conf             8577878631247777489999999983995999966987998699999999983989959