Query gi|254780768|ref|YP_003065181.1| hypothetical protein CLIBASIA_03295 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 281 No_of_seqs 128 out of 720 Neff 6.7 Searched_HMMs 23785 Date Mon May 30 13:51:09 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780768.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1zcz_A Bifunctional purine bio 97.3 0.0037 1.6E-07 40.2 11.2 111 139-274 340-456 (464) 2 1g8m_A Aicar transformylase-IM 96.7 0.038 1.6E-06 33.5 12.6 120 139-274 404-585 (593) 3 1kjq_A GART 2, phosphoribosylg 93.3 0.25 1.1E-05 27.9 6.8 71 2-74 12-82 (391) 4 2dwc_A PH0318, 433AA long hypo 92.6 0.22 9.2E-06 28.3 5.6 70 2-72 20-89 (433) 5 2vpq_A Acetyl-COA carboxylase; 92.6 0.13 5.6E-06 29.8 4.5 69 1-70 1-78 (451) 6 1jfl_A Aspartate racemase; alp 92.3 0.43 1.8E-05 26.3 6.7 76 1-76 1-85 (228) 7 2pv7_A T-protein [includes: ch 91.8 0.54 2.3E-05 25.7 6.8 63 1-63 21-87 (298) 8 2zsk_A PH1733, 226AA long hypo 91.7 0.23 9.5E-06 28.2 4.8 75 1-76 1-84 (226) 9 1t2a_A GDP-mannose 4,6 dehydra 91.7 0.36 1.5E-05 26.9 5.8 75 1-75 23-112 (375) 10 3eth_A Phosphoribosylaminoimid 90.9 0.29 1.2E-05 27.5 4.7 35 1-36 1-35 (355) 11 1pfk_A Phosphofructokinase; tr 90.4 0.2 8.5E-06 28.6 3.5 74 1-76 2-105 (320) 12 1vhq_A Enhancing lycopene bios 90.0 1 4.3E-05 23.8 6.8 185 1-204 6-225 (232) 13 3pfk_A Phosphofructokinase; tr 89.7 0.19 8E-06 28.7 2.9 76 1-76 1-104 (319) 14 1orr_A CDP-tyvelose-2-epimeras 89.4 1 4.2E-05 23.8 6.4 76 1-76 1-84 (347) 15 3k5i_A Phosphoribosyl-aminoimi 88.4 1.2 5E-05 23.3 6.2 67 1-71 24-92 (403) 16 2z04_A Phosphoribosylaminoimid 88.0 0.39 1.6E-05 26.6 3.5 63 1-71 1-63 (365) 17 2c20_A UDP-glucose 4-epimerase 87.9 1.4 6.1E-05 22.8 6.9 75 1-75 1-77 (330) 18 1zxx_A 6-phosphofructokinase; 87.8 0.32 1.3E-05 27.2 3.0 232 1-265 1-303 (319) 19 1hdo_A Biliverdin IX beta redu 87.4 1.5 6.5E-05 22.6 8.5 69 1-71 3-73 (206) 20 3nkl_A UDP-D-quinovosamine 4-d 87.3 0.98 4.1E-05 23.9 5.3 71 3-75 5-75 (141) 21 2q1w_A Putative nucleotide sug 85.1 2 8.4E-05 21.8 6.9 76 1-76 21-100 (333) 22 2nm0_A Probable 3-oxacyl-(acyl 84.6 2.1 8.8E-05 21.7 9.4 162 1-176 20-189 (253) 23 1ek6_A UDP-galactose 4-epimera 84.6 1.2 5.1E-05 23.3 4.6 74 2-75 3-91 (348) 24 1oi4_A Hypothetical protein YH 84.5 2.1 8.9E-05 21.7 5.9 158 1-200 23-188 (193) 25 2g5c_A Prephenate dehydrogenas 83.5 1.6 6.6E-05 22.5 4.8 33 1-34 1-33 (281) 26 1db3_A GDP-mannose 4,6-dehydra 83.0 1.9 8E-05 22.0 5.1 75 2-76 1-89 (372) 27 3dhn_A NAD-dependent epimerase 82.8 1.4 6E-05 22.8 4.4 70 1-73 4-75 (227) 28 2dzd_A Pyruvate carboxylase; b 82.5 0.85 3.6E-05 24.3 3.1 66 5-70 9-84 (461) 29 2w70_A Biotin carboxylase; lig 82.5 2.5 0.00011 21.1 6.0 72 1-73 1-81 (449) 30 2raf_A Putative dinucleotide-b 81.9 1.6 6.6E-05 22.6 4.3 36 1-38 20-55 (209) 31 3ojc_A Putative aspartate/glut 80.9 1.1 4.5E-05 23.6 3.2 75 1-76 2-87 (231) 32 3ggo_A Prephenate dehydrogenas 80.6 2.3 9.9E-05 21.4 4.8 33 1-34 33-65 (314) 33 3ist_A Glutamate racemase; str 80.6 2.2 9.2E-05 21.6 4.7 72 1-75 4-77 (269) 34 1jvn_A Glutamine, bifunctional 80.2 2.6 0.00011 21.1 5.0 62 1-65 4-67 (555) 35 3ouz_A Biotin carboxylase; str 79.9 1.7 7E-05 22.4 3.9 69 1-70 6-83 (446) 36 2ekp_A 2-deoxy-D-gluconate 3-d 79.2 3.3 0.00014 20.4 7.9 167 1-176 1-174 (239) 37 2nv0_A Glutamine amidotransfer 78.2 3.4 0.00014 20.3 5.0 31 1-32 1-31 (196) 38 1udb_A Epimerase, UDP-galactos 77.5 3.6 0.00015 20.1 7.5 75 2-76 1-84 (338) 39 2z1m_A GDP-D-mannose dehydrata 77.4 3.7 0.00015 20.0 5.5 76 1-76 3-86 (345) 40 2g1u_A Hypothetical protein TM 75.5 3.5 0.00015 20.2 4.5 117 6-136 23-146 (155) 41 2nu8_A Succinyl-COA ligase [AD 75.4 1.8 7.5E-05 22.2 3.0 152 3-195 9-193 (288) 42 1ulz_A Pyruvate carboxylase N- 75.3 2.3 9.5E-05 21.5 3.5 69 1-70 2-78 (451) 43 2r6j_A Eugenol synthase 1; phe 75.3 3.8 0.00016 20.0 4.6 70 1-72 10-86 (318) 44 2vrn_A Protease I, DR1199; cys 75.1 4.2 0.00018 19.7 4.9 164 2-201 10-178 (190) 45 3c1o_A Eugenol synthase; pheny 74.6 4.3 0.00018 19.6 7.0 34 1-34 4-37 (321) 46 3out_A Glutamate racemase; str 74.3 4.4 0.00019 19.5 5.2 71 1-74 5-78 (268) 47 2jjm_A Glycosyl transferase, g 73.6 2.5 0.0001 21.2 3.3 33 1-33 14-52 (394) 48 2pk3_A GDP-6-deoxy-D-LYXO-4-he 73.5 4.6 0.00019 19.4 8.6 73 1-76 13-85 (321) 49 3ktd_A Prephenate dehydrogenas 73.4 4.6 0.0002 19.4 5.2 82 1-84 8-111 (341) 50 1uay_A Type II 3-hydroxyacyl-C 73.0 4.2 0.00018 19.7 4.4 37 1-37 1-38 (242) 51 2yv2_A Succinyl-COA synthetase 72.0 2.4 0.0001 21.3 3.0 152 3-195 15-200 (297) 52 3llv_A Exopolyphosphatase-rela 71.1 4.6 0.00019 19.4 4.2 60 5-68 9-70 (141) 53 1id1_A Putative potassium chan 71.1 4.6 0.00019 19.4 4.2 31 5-35 6-36 (153) 54 2yw2_A Phosphoribosylamine--gl 70.5 5.4 0.00023 18.9 7.0 65 6-74 4-70 (424) 55 1oi7_A Succinyl-COA synthetase 70.3 3.5 0.00015 20.2 3.5 140 3-179 9-179 (288) 56 2jfz_A Glutamate racemase; cel 69.5 5.6 0.00024 18.8 5.9 70 3-75 2-72 (255) 57 3m2p_A UDP-N-acetylglucosamine 69.3 5.7 0.00024 18.8 8.1 72 1-76 1-73 (311) 58 2cfc_A 2-(R)-hydroxypropyl-COM 68.0 6 0.00025 18.6 4.8 166 1-177 1-186 (250) 59 3hbl_A Pyruvate carboxylase; T 67.9 6.1 0.00026 18.6 5.6 114 5-128 7-137 (1150) 60 1uzm_A 3-oxoacyl-[acyl-carrier 67.5 6.2 0.00026 18.5 8.7 166 1-176 14-183 (247) 61 1jay_A Coenzyme F420H2:NADP+ o 67.2 5.5 0.00023 18.9 4.0 32 3-34 2-33 (212) 62 2yrx_A Phosphoribosylglycinami 67.0 6.3 0.00027 18.5 7.8 125 3-165 23-158 (451) 63 1lss_A TRK system potassium up 66.8 5.6 0.00024 18.8 3.9 117 6-136 8-131 (140) 64 3fwz_A Inner membrane protein 66.4 6.5 0.00027 18.4 4.3 35 2-36 7-41 (140) 65 2duw_A Putative COA-binding pr 65.9 5 0.00021 19.1 3.5 74 2-75 14-104 (145) 66 3l9w_A Glutathione-regulated p 65.6 6.7 0.00028 18.3 4.2 33 5-37 7-39 (413) 67 2f1k_A Prephenate dehydrogenas 65.6 6.7 0.00028 18.3 4.2 31 2-33 1-31 (279) 68 2hmt_A YUAA protein; RCK, KTN, 65.3 4.9 0.00021 19.2 3.4 60 6-69 10-71 (144) 69 1xq6_A Unknown protein; struct 65.1 6.9 0.00029 18.2 5.4 71 1-73 4-77 (253) 70 1y81_A Conserved hypothetical 64.9 4.3 0.00018 19.6 3.0 75 1-75 14-103 (138) 71 2d1p_B TUSC, hypothetical UPF0 64.8 3.7 0.00016 20.0 2.7 74 1-74 1-81 (119) 72 2yv1_A Succinyl-COA ligase [AD 64.6 4.2 0.00018 19.7 2.9 196 3-253 15-242 (294) 73 1geg_A Acetoin reductase; SDR 63.1 7.4 0.00031 18.0 7.2 165 1-175 1-181 (256) 74 1z45_A GAL10 bifunctional prot 63.0 7.5 0.00031 18.0 6.0 75 2-76 12-95 (699) 75 3l4b_C TRKA K+ channel protien 62.5 7.6 0.00032 17.9 4.1 31 1-33 1-31 (218) 76 3a28_C L-2.3-butanediol dehydr 62.0 7.8 0.00033 17.9 7.2 166 1-176 1-184 (258) 77 1a9x_A Carbamoyl phosphate syn 61.4 8 0.00033 17.8 3.9 63 5-69 10-86 (1073) 78 3lp8_A Phosphoribosylamine-gly 61.2 8 0.00034 17.8 6.4 130 6-177 25-165 (442) 79 3dqp_A Oxidoreductase YLBE; al 60.3 8.2 0.00034 17.7 3.8 34 1-35 1-34 (219) 80 2qk4_A Trifunctional purine bi 59.6 8.6 0.00036 17.6 8.4 130 1-165 23-163 (452) 81 2pzm_A Putative nucleotide sug 58.9 8.8 0.00037 17.5 7.3 74 1-75 21-98 (330) 82 1rpn_A GDP-mannose 4,6-dehydra 58.1 9.1 0.00038 17.4 6.5 76 1-76 13-97 (335) 83 3h2s_A Putative NADH-flavin re 58.0 9.1 0.00038 17.4 4.0 31 1-32 1-31 (224) 84 3e48_A Putative nucleoside-dip 58.0 9.1 0.00038 17.4 6.2 72 1-75 1-75 (289) 85 3ff4_A Uncharacterized protein 57.6 5.9 0.00025 18.7 2.7 71 1-71 4-88 (122) 86 2vns_A Metalloreductase steap3 57.1 9.4 0.00039 17.3 4.7 33 3-36 30-62 (215) 87 2iss_D Glutamine amidotransfer 57.0 9.4 0.0004 17.3 5.1 62 1-68 21-82 (208) 88 3i6i_A Putative leucoanthocyan 57.0 9.4 0.0004 17.3 7.0 71 2-72 11-90 (346) 89 2h78_A Hibadh, 3-hydroxyisobut 56.9 9.5 0.0004 17.3 4.7 152 1-166 3-158 (302) 90 2ahr_A Putative pyrroline carb 56.5 8.9 0.00037 17.5 3.4 31 1-33 4-34 (259) 91 1xim_A D-xylose isomerase; iso 55.1 10 0.00042 17.1 6.1 149 108-269 69-238 (393) 92 2zvr_A Uncharacterized protein 53.6 8.9 0.00037 17.5 3.0 18 232-249 245-263 (290) 93 1tv8_A MOAA, molybdenum cofact 53.4 10 0.00044 17.0 3.4 118 48-178 49-171 (340) 94 2p5y_A UDP-glucose 4-epimerase 53.2 11 0.00046 16.9 5.5 74 1-75 1-76 (311) 95 1iuk_A Hypothetical protein TT 51.7 4.6 0.00019 19.4 1.4 31 3-33 15-48 (140) 96 3a4v_A NDP-sugar epimerase; L- 51.6 11 0.00048 16.7 5.7 71 5-76 3-73 (317) 97 2x4g_A Nucleoside-diphosphate- 50.9 12 0.00049 16.7 7.9 71 3-75 15-87 (342) 98 2qip_A Protein of unknown func 50.8 11 0.00048 16.7 3.3 25 150-176 92-116 (165) 99 1iow_A DD-ligase, DDLB, D-ALA\ 49.8 12 0.00051 16.5 5.6 68 1-68 1-83 (306) 100 1vl0_A DTDP-4-dehydrorhamnose 49.8 10 0.00044 17.0 2.9 229 3-278 14-249 (292) 101 3ius_A Uncharacterized conserv 49.7 12 0.00051 16.5 4.1 33 1-33 4-36 (286) 102 5nul_A Flavodoxin; electron tr 49.4 12 0.0005 16.6 3.2 114 12-161 14-136 (138) 103 1gpw_B Amidotransferase HISH; 49.3 4.5 0.00019 19.5 1.0 29 3-32 2-31 (201) 104 2gzm_A Glutamate racemase; enz 49.1 13 0.00053 16.5 4.9 72 1-75 2-75 (267) 105 2jfq_A Glutamate racemase; cel 48.9 13 0.00053 16.5 4.4 72 1-75 21-94 (286) 106 1rkx_A CDP-glucose-4,6-dehydra 48.8 13 0.00053 16.4 10.4 75 2-76 10-91 (357) 107 3dmy_A Protein FDRA; predicted 48.6 11 0.00047 16.8 2.9 36 2-37 113-149 (480) 108 3n6r_A Propionyl-COA carboxyla 48.0 2.2 9.4E-05 21.5 -0.7 73 1-74 1-82 (681) 109 2ark_A Flavodoxin; FMN, struct 48.0 13 0.00055 16.4 4.8 152 1-171 4-172 (188) 110 2d59_A Hypothetical protein PH 47.9 13 0.00055 16.3 4.0 40 231-274 90-129 (144) 111 2ywr_A Phosphoribosylglycinami 47.9 13 0.00055 16.3 7.3 113 1-124 1-137 (216) 112 2if2_A Dephospho-COA kinase; a 47.7 13 0.00055 16.3 4.3 29 1-29 1-29 (204) 113 3e8x_A Putative NAD-dependent 46.6 12 0.00052 16.5 2.9 33 1-34 22-54 (236) 114 3osu_A 3-oxoacyl-[acyl-carrier 46.5 14 0.00058 16.2 7.6 166 1-176 3-184 (246) 115 2qf7_A Pyruvate carboxylase pr 46.0 14 0.00058 16.2 3.7 60 6-67 18-95 (1165) 116 1i24_A Sulfolipid biosynthesis 45.4 14 0.0006 16.1 4.0 74 2-75 12-110 (404) 117 3d54_D Phosphoribosylformylgly 45.3 14 0.0006 16.1 5.8 33 1-33 1-35 (213) 118 2g0w_A LMO2234 protein; putati 44.0 14 0.00061 16.0 2.9 18 233-250 242-261 (296) 119 3b8x_A WBDK, pyridoxamine 5-ph 43.8 11 0.00048 16.8 2.3 51 17-67 93-157 (390) 120 2q02_A Putative cytoplasmic pr 43.4 15 0.00064 15.9 3.7 150 51-249 84-245 (272) 121 1jjv_A Dephospho-COA kinase; P 43.3 11 0.00048 16.7 2.3 29 1-29 1-30 (206) 122 3ju2_A Uncharacterized protein 43.1 4.9 0.00021 19.2 0.4 208 15-266 49-269 (284) 123 3dtt_A NADP oxidoreductase; YP 42.1 16 0.00067 15.8 4.6 32 3-35 21-52 (245) 124 3doj_A AT3G25530, dehydrogenas 42.0 16 0.00067 15.7 3.6 152 1-166 21-176 (310) 125 1tks_A 3,4-dihydroxy-2-butanon 41.9 16 0.00067 15.7 4.0 64 211-277 128-197 (204) 126 1kew_A RMLB;, DTDP-D-glucose 4 41.8 16 0.00068 15.7 6.7 120 2-132 1-138 (361) 127 3obe_A Sugar phosphate isomera 41.8 16 0.00068 15.7 5.0 39 232-270 260-303 (305) 128 3dfu_A Uncharacterized protein 40.5 17 0.00071 15.6 4.2 117 3-129 8-133 (232) 129 1vht_A Dephospho-COA kinase; s 40.1 17 0.00069 15.7 2.7 29 1-29 3-32 (218) 130 2a35_A Hypothetical protein PA 39.4 17 0.00074 15.5 4.5 71 1-75 5-75 (215) 131 3dii_A Short-chain dehydrogena 37.6 19 0.00078 15.3 10.9 168 1-180 1-178 (247) 132 3d3a_A Beta-galactosidase; pro 37.5 19 0.00078 15.3 3.5 13 54-66 78-90 (612) 133 3ew7_A LMO0794 protein; Q8Y8U8 37.4 19 0.00079 15.3 4.2 33 1-34 1-33 (221) 134 2f6r_A COA synthase, bifunctio 37.2 18 0.00074 15.5 2.5 37 103-139 81-117 (281) 135 2hy5_B Intracellular sulfur ox 36.6 10 0.00043 17.1 1.2 74 1-75 5-86 (136) 136 2i1q_A DNA repair and recombin 36.4 13 0.00054 16.4 1.7 13 12-24 113-125 (322) 137 3gpi_A NAD-dependent epimerase 36.2 20 0.00082 15.2 5.0 75 1-76 3-111 (286) 138 2c5a_A GDP-mannose-3', 5'-epim 35.4 20 0.00085 15.1 6.4 69 1-72 30-100 (379) 139 1muw_A Xylose isomerase; atomi 35.3 20 0.00085 15.1 3.9 182 56-270 37-239 (386) 140 3gg2_A Sugar dehydrogenase, UD 35.2 20 0.00085 15.1 6.2 97 3-105 4-115 (450) 141 3mwd_B ATP-citrate synthase; A 35.2 16 0.00068 15.7 2.0 76 110-195 120-217 (334) 142 2h7i_A Enoyl-[acyl-carrier-pro 34.8 21 0.00086 15.0 4.4 61 2-62 7-79 (269) 143 3kzv_A Uncharacterized oxidore 33.5 21 0.0009 14.9 3.9 119 1-125 1-133 (254) 144 3d4o_A Dipicolinate synthase s 33.5 22 0.00091 14.9 2.7 33 2-35 6-38 (293) 145 1tht_A Thioesterase; 2.10A {Vi 33.4 22 0.00091 14.9 4.5 70 4-74 38-113 (305) 146 2vzs_A CSXA, EXO-beta-D-glucos 33.2 22 0.00091 14.8 4.8 37 234-274 379-415 (1032) 147 2dwu_A Glutamate racemase; iso 33.1 22 0.00092 14.8 3.8 71 2-75 8-79 (276) 148 1n7h_A GDP-D-mannose-4,6-dehyd 33.0 22 0.00092 14.8 6.4 75 2-76 28-117 (381) 149 3gm8_A Glycoside hydrolase fam 32.7 22 0.00093 14.8 4.1 36 235-274 313-348 (801) 150 3ccy_A Putative TETR-family tr 32.5 22 0.00094 14.8 2.9 47 107-153 17-63 (203) 151 2cc0_A Acetyl-xylan esterase; 32.3 22 0.00092 14.8 2.3 160 54-280 19-187 (195) 152 1e6u_A GDP-fucose synthetase; 31.7 23 0.00097 14.7 3.6 33 2-34 4-36 (321) 153 3cny_A Inositol catabolism pro 31.6 23 0.00097 14.7 2.8 20 232-251 255-275 (301) 154 3oa2_A WBPB; oxidoreductase, s 31.5 23 0.00098 14.7 4.4 31 1-31 3-33 (318) 155 2b69_A UDP-glucuronate decarbo 31.4 23 0.00098 14.6 4.2 32 1-32 27-58 (343) 156 3fro_A GLGA glycogen synthase; 31.3 23 0.00098 14.6 3.3 31 1-32 3-42 (439) 157 1ycg_A Nitric oxide reductase; 31.2 23 0.00098 14.6 5.5 20 105-124 264-283 (398) 158 2dtx_A Glucose 1-dehydrogenase 31.0 24 0.00099 14.6 8.7 121 2-131 8-135 (264) 159 3i83_A 2-dehydropantoate 2-red 30.9 24 0.001 14.6 4.4 31 1-32 1-32 (320) 160 1vkm_A Conserved hypothetical 29.9 24 0.00099 14.6 2.1 148 16-177 48-227 (297) 161 2f5v_A Pyranose 2-oxidase; fla 29.8 25 0.001 14.5 3.8 28 5-32 21-48 (595) 162 3l3b_A ES1 family protein; ssg 29.7 25 0.001 14.5 8.2 176 2-201 24-240 (242) 163 1ff9_A Saccharopine reductase; 29.1 25 0.0011 14.4 4.4 62 1-63 3-68 (450) 164 3khs_A Purine nucleoside phosp 28.8 26 0.0011 14.4 3.4 26 50-75 89-114 (285) 165 1vmk_A Purine nucleoside phosp 28.7 26 0.0011 14.3 3.1 27 49-75 98-124 (277) 166 1jx7_A Hypothetical protein YC 28.6 26 0.0011 14.3 6.4 78 1-81 1-87 (117) 167 3c85_A Putative glutathione-re 28.5 26 0.0011 14.3 2.5 29 5-33 42-71 (183) 168 2fp4_A Succinyl-COA ligase [GD 28.3 23 0.00098 14.7 1.9 142 3-179 16-187 (305) 169 2je8_A Beta-mannosidase; glyco 28.2 26 0.0011 14.3 4.1 40 233-274 356-395 (848) 170 3bb8_A CDP-4-keto-6-deoxy-D-gl 28.1 16 0.00068 15.7 1.1 52 16-67 122-187 (437) 171 3g17_A Similar to 2-dehydropan 28.1 26 0.0011 14.3 3.7 31 1-32 1-32 (294) 172 2nyd_A UPF0135 protein SA1388; 27.8 26 0.0011 14.3 2.1 29 173-201 238-266 (370) 173 2ejb_A Probable aromatic acid 27.7 27 0.0011 14.2 4.7 33 1-33 1-36 (189) 174 1evy_A Glycerol-3-phosphate de 27.6 27 0.0011 14.3 2.1 33 1-34 15-47 (366) 175 3lwb_A D-alanine--D-alanine li 27.1 11 0.00045 17.0 -0.0 35 3-37 12-54 (373) 176 2oho_A Glutamate racemase; iso 26.4 28 0.0012 14.1 5.0 72 1-75 10-84 (273) 177 2i87_A D-alanine-D-alanine lig 26.4 28 0.0012 14.1 2.5 35 2-36 4-46 (364) 178 2iw0_A Chitin deacetylase; hyd 26.4 28 0.0012 14.1 2.7 19 54-72 56-74 (254) 179 1vq2_A DCMP deaminase, deoxycy 26.3 28 0.0012 14.1 2.6 59 209-280 121-179 (193) 180 1oc2_A DTDP-glucose 4,6-dehydr 26.3 28 0.0012 14.1 3.9 73 1-75 4-85 (348) 181 1req_A Methylmalonyl-COA mutas 26.2 29 0.0012 14.1 6.1 17 117-133 456-472 (727) 182 1qyc_A Phenylcoumaran benzylic 26.1 29 0.0012 14.1 5.1 32 2-33 5-36 (308) 183 1yac_A Ycacgp, YCAC gene produ 25.6 15 0.00062 16.0 0.5 114 16-136 42-174 (208) 184 2gx8_A NIF3-related protein; s 25.5 29 0.0012 14.0 3.1 23 178-200 270-292 (397) 185 3d1l_A Putative NADP oxidoredu 25.0 30 0.0013 13.9 4.3 123 2-126 11-165 (266) 186 1qsg_A Enoyl-[acyl-carrier-pro 24.9 30 0.0013 13.9 4.7 63 2-64 9-84 (265) 187 2z2v_A Hypothetical protein PH 24.5 31 0.0013 13.8 3.3 59 3-63 18-77 (365) 188 3lpf_A Beta-glucuronidase; alp 24.3 31 0.0013 13.8 4.6 19 56-74 315-333 (605) 189 1e4e_A Vancomycin/teicoplanin 23.9 31 0.0013 13.8 2.7 36 1-36 1-46 (343) 190 1bxb_A Xylose isomerase; xylos 23.8 31 0.0013 13.8 6.2 151 107-270 68-239 (387) 191 2iuy_A Avigt4, glycosyltransfe 23.8 31 0.0013 13.8 4.3 57 12-71 34-90 (342) 192 3l23_A Sugar phosphate isomera 23.8 31 0.0013 13.8 5.2 38 232-269 258-300 (303) 193 3bga_A Beta-galactosidase; NYS 23.3 32 0.0014 13.7 4.4 37 234-274 377-413 (1010) 194 3dzb_A Prephenate dehydrogenas 23.3 32 0.0014 13.7 3.6 126 1-128 5-179 (317) 195 3cmg_A Putative beta-galactosi 23.1 32 0.0014 13.7 4.1 38 233-274 308-345 (667) 196 1qyd_A Pinoresinol-lariciresin 23.1 32 0.0014 13.7 4.4 31 3-33 6-36 (313) 197 1yxo_A 4-hydroxythreonine-4-ph 23.0 33 0.0014 13.7 2.8 30 1-30 1-33 (328) 198 2h29_A Probable nicotinate-nuc 22.8 33 0.0014 13.6 2.6 33 1-33 1-38 (189) 199 3l8m_A Probable thiamine pyrop 22.8 33 0.0014 13.6 2.8 75 1-80 1-104 (212) 200 3fn9_A Putative beta-galactosi 22.4 33 0.0014 13.6 3.8 11 260-270 345-355 (692) 201 2qwt_A Transcriptional regulat 22.4 29 0.0012 14.0 1.5 46 107-153 16-61 (196) 202 3eei_A 5-methylthioadenosine n 22.3 34 0.0014 13.6 4.8 72 1-76 3-81 (233) 203 1nmo_A Hypothetical protein YB 22.2 34 0.0014 13.6 1.8 75 188-276 138-214 (247) 204 3lt0_A Enoyl-ACP reductase; tr 22.2 34 0.0014 13.6 4.9 32 2-33 2-36 (329) 205 3fio_A A cystathionine beta-sy 22.2 34 0.0014 13.6 3.6 35 158-196 12-46 (70) 206 1coy_A Cholesterol oxidase; ox 22.2 34 0.0014 13.6 3.5 28 5-32 14-41 (507) 207 2yy7_A L-threonine dehydrogena 22.1 34 0.0014 13.5 7.6 169 2-185 3-178 (312) 208 1zk8_A Transcriptional regulat 22.1 31 0.0013 13.8 1.6 47 106-152 10-56 (183) 209 3kkc_A TETR family transcripti 22.0 24 0.001 14.6 1.0 49 106-154 14-62 (177) 210 2grj_A Dephospho-COA kinase; T 21.9 34 0.0014 13.5 2.0 25 4-28 15-40 (192) 211 2fd5_A Transcriptional regulat 21.8 34 0.0014 13.5 3.0 47 107-153 10-56 (180) 212 2gv8_A Monooxygenase; FMO, FAD 21.7 35 0.0015 13.5 5.2 30 1-31 6-37 (447) 213 2iu5_A DHAS, hypothetical prot 21.7 35 0.0015 13.5 5.4 57 106-162 15-71 (195) 214 2oga_A Transaminase; PLP-depen 21.6 25 0.0011 14.4 1.0 14 53-66 166-179 (399) 215 1b73_A Glutamate racemase; iso 21.5 35 0.0015 13.5 4.2 123 3-128 2-138 (254) 216 2aef_A Calcium-gated potassium 21.3 35 0.0015 13.4 2.7 28 5-34 12-39 (234) 217 1pgj_A 6PGDH, 6-PGDH, 6-phosph 21.3 35 0.0015 13.4 4.3 156 1-175 2-173 (478) 218 3lw7_A Adenylate kinase relate 21.1 36 0.0015 13.4 1.9 29 1-29 1-29 (179) 219 1tqh_A Carboxylesterase precur 21.0 36 0.0015 13.4 3.8 70 5-74 20-93 (247) 220 1rh9_A Endo-beta-mannanase; en 21.0 36 0.0015 13.4 2.7 53 16-70 46-103 (373) 221 3crj_A Transcription regulator 20.8 29 0.0012 14.0 1.2 49 106-154 16-64 (199) 222 1vpd_A Tartronate semialdehyde 20.8 36 0.0015 13.4 4.5 174 1-200 4-181 (299) 223 2q24_A Putative TETR family tr 20.8 28 0.0012 14.1 1.1 46 107-153 18-63 (194) 224 2qiw_A PEP phosphonomutase; NP 20.6 32 0.0014 13.7 1.4 58 186-248 164-235 (255) 225 1yq2_A Beta-galactosidase; gly 20.5 37 0.0015 13.3 4.4 35 235-273 355-389 (1024) 226 3da8_A Probable 5'-phosphoribo 20.5 37 0.0015 13.3 5.6 73 2-75 13-99 (215) 227 3cky_A 2-hydroxymethyl glutara 20.4 37 0.0015 13.3 4.6 150 3-166 6-159 (301) 228 2np5_A Transcriptional regulat 20.4 27 0.0012 14.2 1.0 43 108-150 13-55 (203) 229 2pn1_A Carbamoylphosphate synt 20.4 37 0.0015 13.3 6.2 70 1-71 2-78 (331) 230 2nly_A BH1492 protein, diverge 20.3 37 0.0015 13.3 1.7 30 105-134 112-141 (245) 231 3ic5_A Putative saccharopine d 20.1 37 0.0016 13.3 2.9 69 1-72 4-76 (118) 232 1ka9_H Imidazole glycerol phos 20.1 37 0.0016 13.3 3.2 28 3-31 4-32 (200) No 1 >1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4 Probab=97.34 E-value=0.0037 Score=40.24 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=81.4 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHHH------HHHHHHHHHHHCCCCCCCCEE Q ss_conf 33455465323478899899999973326722599981974889625342179------999999754312345667718 Q gi|254780768|r 139 GSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGRVVALEGIEGTDS------MLQRIVDCRNNGRILAGKSGV 212 (281) Q Consensus 139 G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD~------mi~R~~~~~~~~~~~~~~~~i 212 (281) -+.|.++|++++++|+.++|++++..-+=-| |+++|+..+++=+=+ |+. .++++++ ..+|++ T Consensus 340 ~~vt~~~pt~~e~~dL~FAwkv~K~vkSNAI---v~akn~~tiGIGaGQ-~sRvds~~iA~~kA~~--------~~~g~v 407 (464) T 1zcz_A 340 ELVVGEPLSEKELEDLEFAYRVVEGAKSNAV---LIAKDGVTVGIGSGQ-PSRKRAAWIATVMAGE--------KAKGAV 407 (464) T ss_dssp EEEESCCCCHHHHHHHHHHHHHHHHSCSSCE---EEEETTEEEEEECSC-SSHHHHHHHHHHHHGG--------GGTTCE T ss_pred CEEECCCCCHHHHCCCCHHHHHHCCCCCCCE---EEEECCEEEEECCCC-CCHHHHHHHHHHHHCC--------CCCCEE T ss_conf 1010578883331450058866453542648---996098699758886-5779999999998353--------027869 Q ss_pred EEEECCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEE Q ss_conf 99934888753121066279999999984990999973977998589999999987968999 Q gi|254780768|r 213 LVKMCKSQQDMRADLPSIGAKTVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274 (281) Q Consensus 213 lvK~~K~~QD~r~DlP~IG~~Ti~~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~g 274 (281) +.= |== +|- ++.|+.++++|.+.|+ +.|+++ .-+++|+.||++||..+= T Consensus 408 ~aS------DAF--FPF--~D~i~~aa~~Gv~~Ii-qPGGSi--rD~evI~aane~gi~m~f 456 (464) T 1zcz_A 408 AAS------DAF--FPF--PDSLEILAQAGVKAVV-APLGSI--RDEEVIEKARELGITFYK 456 (464) T ss_dssp EEE------SSC--CSS--HHHHHHHHHTTCCEEE-ECCCCT--THHHHHHHHHHHTCEEEE T ss_pred EEE------CCC--CCC--CHHHHHHHHCCCEEEE-CCCCCC--CHHHHHHHHHHHCCEEEE T ss_conf 995------668--887--5489999983994998-798742--519999999974978998 No 2 >1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A* Probab=96.73 E-value=0.038 Score=33.45 Aligned_cols=120 Identities=15% Similarity=0.073 Sum_probs=81.8 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCC-----CHHHHHHHHHHHHHHCCC-------- Q ss_conf 3345546532347889989999997332672259998197488962534-----217999999975431234-------- Q gi|254780768|r 139 GSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGRVVALEGIE-----GTDSMLQRIVDCRNNGRI-------- 205 (281) Q Consensus 139 G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~e-----GTD~mi~R~~~~~~~~~~-------- 205 (281) .+.+.++|++++++|+.++|++++..-+=-| |+++++..+++=+=+ -+.-.++|+++..-+... T Consensus 404 vv~~~~~p~~~e~~DL~FAw~vvK~vKSNAI---v~ak~~~tvGIGaGQ~sRVdsv~iA~~KA~~~~~~~~~~~l~~~~~ 480 (593) T 1g8m_A 404 IVTKNKTLPESAVRDLIVASIAVKYTQSNSV---CYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFK 480 (593) T ss_dssp BCSSSCCCCHHHHHHHHHHHHHHHTSCSSCE---EEEETTEEEEEECSCSCHHHHHHHHHHHHHHHHHTTCHHHHTCEEC T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCEE---EEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCHH T ss_conf 2214689847789999999997254777579---9986997897678876657899999999755665306023201100 Q ss_pred -------------------------------------------------CCCCCEEEEEECCCCCCCEEEECCCCHHHHH Q ss_conf -------------------------------------------------5667718999348887531210662799999 Q gi|254780768|r 206 -------------------------------------------------LAGKSGVLVKMCKSQQDMRADLPSIGAKTVQ 236 (281) Q Consensus 206 -------------------------------------------------~~~~~~ilvK~~K~~QD~r~DlP~IG~~Ti~ 236 (281) ..-+|+|+.= |==|=+ ++.|+ T Consensus 481 ~~~~r~~~~nai~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~vlAS------DAFFPF----~D~ie 550 (593) T 1g8m_A 481 AGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSS------DAFFPF----RDNVD 550 (593) T ss_dssp TTCCHHHHHHHHHHHHHTCSCSTHHHHHHHTTEEECCCCCCHHHHHHHHTTCCCEEEEE------SSCCSS----THHHH T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEE------ECCCCC----CHHHH T ss_conf 12003444334565411443310244555543013543100788876650358838982------158787----65899 Q ss_pred HHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEE Q ss_conf 99984990999973977998589999999987968999 Q gi|254780768|r 237 NVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274 (281) Q Consensus 237 ~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~g 274 (281) .++++|.+.|+ +.|+++ .-+++|+.||++||..+= T Consensus 551 ~a~~~GV~aIi-QPGGSi--rD~evI~aan~~giaMvf 585 (593) T 1g8m_A 551 RAKRIGVQFIV-APSGSA--ADEVVIEACNELGITLIH 585 (593) T ss_dssp HHHTTTEEEEE-EECCCT--THHHHHHHHHHHTCEEEE T ss_pred HHHHCCCEEEE-CCCCCC--CCHHHHHHHHHHCCEEEE T ss_conf 99983991998-798643--609999999973988998 No 3 >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Probab=93.34 E-value=0.25 Score=27.87 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=48.8 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 7399997798038999999997899789999548667310388567873899999999998649540677024 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGA 74 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~ 74 (281) +||+|| |+|.|-+..+.+|++.|++++++.-...+....-...+...+..+...+.++-++++|+-+ ..|. T Consensus 12 ~kvlIi-G~Gqlgr~~a~Aak~lG~~v~~~~~~~~~p~~~~ad~~~~~~~~D~e~l~~~a~~~~~d~v-~~~~ 82 (391) T 1kjq_A 12 TRVMLL-GSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYI-VPEI 82 (391) T ss_dssp CEEEEE-SCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEE-EECS T ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCEEEEECCCCHHHHHHHHHHHCCCEE-EECC T ss_conf 899998-9789999999999987998999979999836762663698368899999999998499999-9277 No 4 >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* Probab=92.64 E-value=0.22 Score=28.31 Aligned_cols=70 Identities=19% Similarity=0.095 Sum_probs=48.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 73999977980389999999978997899995486673103885678738999999999986495406770 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVA 72 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivma 72 (281) +||. |-|+|.|-+.++.++++.|++++++.-...+....-...+...++.+...+.++.++++|+-++.- T Consensus 20 ~kIl-IlG~Gqlgr~la~aA~~lG~~v~v~d~~~~~pa~~~ad~~~~~~~~D~e~l~~~a~~~~~d~v~~~ 89 (433) T 2dwc_A 20 QKIL-LLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPE 89 (433) T ss_dssp CEEE-EESCSHHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEEC T ss_pred CEEE-EECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEEC T ss_conf 8999-999889999999999986998999979798867773555897799999999999998299999979 No 5 >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Probab=92.62 E-value=0.13 Score=29.76 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=47.0 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC--CEEEEE-------HHHHHHHHHHHHHCCCCEEE Q ss_conf 97399997798038999999997899789999548667310388--567873-------89999999999864954067 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDF--ECRELP-------LGDFCVLRSILHQYNIGRIV 70 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~--~~~~~~-------ig~ig~li~~Lk~~~i~~iv 70 (281) |+|| |||+.|.....++++|+..|++++.+.-....+...... ..+.+. .-++..+++..++.+|+-|. T Consensus 1 ikki-LIanrGeiA~riira~relGi~tVaV~s~~D~~a~~~~~ADe~~~i~~~~~~~syLd~~~Ii~ia~~~~~DaIh 78 (451) T 2vpq_A 1 MKKV-LIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVH 78 (451) T ss_dssp -CEE-EECCCHHHHHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEE T ss_pred CCEE-EEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEE T ss_conf 9689-99897099999999999879959998483674688977889999818986423436899999999997829999 No 6 >1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomerase; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A Probab=92.26 E-value=0.43 Score=26.34 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=42.3 Q ss_pred CCEEEEEECCCCHHH-HHHHHHHHCC-------CCEEE-EEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEE Q ss_conf 973999977980389-9999999789-------97899-99548667310388567873899999999998649540677 Q gi|254780768|r 1 MKRLLIIAGSGMLPY-YVAKAARLKN-------DEPVI-ASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 1 M~kigIIAG~G~LP~-~ia~~~~~~g-------~~~~i-i~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivm 71 (281) |++||||.|-|-+.- .+.+.+.+.. +..++ .......+..........-....+-...++|.+.||+-++| T Consensus 1 Mk~IGIiGG~gp~at~~~~~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~ivi 80 (228) T 1jfl_A 1 MKTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYILGKGEDPRPQLIWTAKRLEECGADFIIM 80 (228) T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCCHHHHHTTSSCCCHHHHHHHHHHHHHHTCSEEEC T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 98899952779799999999999999875588678067786787777889874431569999999999999769999999 Q ss_pred ECCCC Q ss_conf 02423 Q gi|254780768|r 72 AGAID 76 (281) Q Consensus 72 aG~V~ 76 (281) +-.-. T Consensus 81 aCNTa 85 (228) T 1jfl_A 81 PCNTA 85 (228) T ss_dssp SCTGG T ss_pred ECHHH T ss_conf 46289 No 7 >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99.5) (CM) and prephenate dehydrogenase...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Probab=91.76 E-value=0.54 Score=25.66 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=42.7 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC--CCCCCE--EEEEHHHHHHHHHHHHH Q ss_conf 9739999779803899999999789978999954866731--038856--78738999999999986 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFD--WQDFEC--RELPLGDFCVLRSILHQ 63 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~--~~~~~~--~~~~ig~ig~li~~Lk~ 63 (281) |+||+||.|.|..=..+++.++++|+++.++........+ ..+.+. ...++..+..++..+.. T Consensus 21 ~~ki~iIGG~G~mG~sla~~l~~~G~~V~~~d~~~~~~~~~~~~~aD~VilavP~~~~~~~l~~~~~ 87 (298) T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKP 87 (298) T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGG T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 8838999269867899999999689959997498043289987599999990969999787898755 No 8 >2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii} Probab=91.75 E-value=0.23 Score=28.22 Aligned_cols=75 Identities=20% Similarity=0.040 Sum_probs=43.9 Q ss_pred CCEEEEEECCCCHHH-----HHHHHHHHCC----CCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEE Q ss_conf 973999977980389-----9999999789----9789999548667310388567873899999999998649540677 Q gi|254780768|r 1 MKRLLIIAGSGMLPY-----YVAKAARLKN----DEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 1 M~kigIIAG~G~LP~-----~ia~~~~~~g----~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivm 71 (281) |++||||.|-|.+.- .+.+....+. .+.+++...+..+..... ....-....+.+..+.|.+.||+-++| T Consensus 1 Mk~IGIIGGmgp~at~~~~~~i~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~L~~~g~~~ivi 79 (226) T 2zsk_A 1 MKKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNP-EGWEGRKKILINAAKALERAGAELIAF 79 (226) T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEEEECCTHHHHTCT-THHHHHHHHHHHHHHHHHHHTCSEEEE T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 9779995075879999999999998687628877885899807802201147-887699999999999999869999998 Q ss_pred ECCCC Q ss_conf 02423 Q gi|254780768|r 72 AGAID 76 (281) Q Consensus 72 aG~V~ 76 (281) +=.-. T Consensus 80 aCNTa 84 (226) T 2zsk_A 80 AANTP 84 (226) T ss_dssp SSSGG T ss_pred ECCHH T ss_conf 36088 No 9 >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Probab=91.71 E-value=0.36 Score=26.88 Aligned_cols=75 Identities=19% Similarity=0.053 Sum_probs=51.3 Q ss_pred CCEEEEE-ECCCCHHHHHHHHHHHCCCCEEEEEECCCC-CC-------------CCCCCCEEEEEHHHHHHHHHHHHHCC Q ss_conf 9739999-779803899999999789978999954866-73-------------10388567873899999999998649 Q gi|254780768|r 1 MKRLLII-AGSGMLPYYVAKAARLKNDEPVIASVLNEC-SF-------------DWQDFECRELPLGDFCVLRSILHQYN 65 (281) Q Consensus 1 M~kigII-AG~G~LP~~ia~~~~~~g~~~~ii~l~~~~-~~-------------~~~~~~~~~~~ig~ig~li~~Lk~~~ 65 (281) |+|++|| .|.|-+=..+++.+.++|++++.+.-.... +. ..+++.....++.+...+.+.+...+ T Consensus 23 Mkk~~LITGatGfIGs~l~~~Ll~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 102 (375) T 1t2a_A 23 MRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 102 (375) T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCHHHHCCCCCEEEECCCCCHHHHHHHHHHCC T ss_conf 98769996086289999999999784989999798755551238887546465424780899841578688788886238 Q ss_pred CCEEEEECCC Q ss_conf 5406770242 Q gi|254780768|r 66 IGRIVVAGAI 75 (281) Q Consensus 66 i~~ivmaG~V 75 (281) +..++-+... T Consensus 103 ~~~v~~~aa~ 112 (375) T 1t2a_A 103 PTEIYNLGAQ 112 (375) T ss_dssp CSEEEECCSC T ss_pred CCCEEEECCC T ss_conf 7401320012 No 10 >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Probab=90.92 E-value=0.29 Score=27.48 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=29.4 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 973999977980389999999978997899995486 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNE 36 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~ 36 (281) |+||+||. +|.|-+.++.+|++.|++++++..... T Consensus 1 MKkv~IlG-~GQLgrm~a~aA~~lG~~v~~~~~d~~ 35 (355) T 3eth_A 1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (355) T ss_dssp CCEEEEES-CSHHHHHHHHHHGGGTCEEEEECTTCC T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 99999987-989999999999978998999817999 No 11 >1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Probab=90.37 E-value=0.2 Score=28.55 Aligned_cols=74 Identities=19% Similarity=0.117 Sum_probs=48.2 Q ss_pred CCEEEEEECCCCHHH------HHHHHHHHCCCCEEEEEECCCC----CCC--------CCCC---------CEE---EEE Q ss_conf 973999977980389------9999999789978999954866----731--------0388---------567---873 Q gi|254780768|r 1 MKRLLIIAGSGMLPY------YVAKAARLKNDEPVIASVLNEC----SFD--------WQDF---------ECR---ELP 50 (281) Q Consensus 1 M~kigIIAG~G~LP~------~ia~~~~~~g~~~~ii~l~~~~----~~~--------~~~~---------~~~---~~~ 50 (281) |+||||+-..|.=|- -+.+.+...|++++-+ .+.- +.+ ...+ .+. ... T Consensus 2 ~krIgIltsGG~~pG~Na~i~~~v~~a~~~g~~v~g~--~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~lgtsR~~~~~~ 79 (320) T 1pfk_A 2 IKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGI--YDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRD 79 (320) T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEE--STHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGS T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE--CCCHHHHCCCCEEECCHHHHHHHHHCCCCEECCCCCCCCCC T ss_conf 8649998658886778999999999998779999999--16678872798686899999779857997224778886665 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 89999999999864954067702423 Q gi|254780768|r 51 LGDFCVLRSILHQYNIGRIVVAGAID 76 (281) Q Consensus 51 ig~ig~li~~Lk~~~i~~ivmaG~V~ 76 (281) -....++++.|++++++.++.+|+-. T Consensus 80 ~~~~~~~~~~l~~~~Id~li~iGGdg 105 (320) T 1pfk_A 80 ENIRAVAIENLKKRGIDALVVIGGDG 105 (320) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHH T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCH T ss_conf 77888999999976998899936936 No 12 >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Probab=89.96 E-value=1 Score=23.79 Aligned_cols=185 Identities=14% Similarity=0.140 Sum_probs=97.4 Q ss_pred CCEEEEE-EC----CCCHHH---HHHHHHHHCCCCEEEEEECCCCCCCCCC---CC-EEEEEHHHHHH--------HHHH Q ss_conf 9739999-77----980389---9999999789978999954866731038---85-67873899999--------9999 Q gi|254780768|r 1 MKRLLII-AG----SGMLPY---YVAKAARLKNDEPVIASVLNECSFDWQD---FE-CRELPLGDFCV--------LRSI 60 (281) Q Consensus 1 M~kigII-AG----~G~LP~---~ia~~~~~~g~~~~ii~l~~~~~~~~~~---~~-~~~~~ig~ig~--------li~~ 60 (281) |+|+++| || .|.-.. .....++++|+++.+++..+....-... .. ....++..-.. -++. T Consensus 6 MKKvaviLsg~g~~DG~E~~E~~~p~~~L~raG~~V~~~sp~~~~~~~~~h~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 85 (232) T 1vhq_A 6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ 85 (232) T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGG T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCHHH T ss_conf 67599996688787750298999999999988997999957998553122567860134233352002153015676668 Q ss_pred HHHCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCC Q ss_conf 98649540677024232100011102603578999999875104803589999999997697482112225242035433 Q gi|254780768|r 61 LHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGS 140 (281) Q Consensus 61 Lk~~~i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~ 140 (281) ++....+=+++-|+.. ...++. +. ..... ..+-+..+.+.+..++++ | +.+.+-=..|-+++..+. T Consensus 86 v~~~dyD~lviPGG~g---~~~~L~-~~-------~~~~~-~~~~~~~v~~~i~~~~~~-~-K~iaaIC~ap~~La~~~~ 151 (232) T 1vhq_A 86 ADAAELDALIVPGGFG---AAKNLS-NF-------ASLGS-ECTVDRELKALAQAMHQA-G-KPLGFMCIAPAMLPKIFD 151 (232) T ss_dssp CCGGGCSEEEECCSTH---HHHTSB-CH-------HHHGG-GCCBCHHHHHHHHHHHHT-T-CCEEEETTGGGGHHHHCS T ss_pred CCHHHCCEEEECCCCC---HHHHHH-HC-------CCCCC-CCCCCHHHHHHHHHHHHC-C-CCEEEECHHHHHHHHHHC T ss_conf 8941288899789954---288865-40-------02464-333399999999999986-9-979998866999999856 Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHHHCC----CCCEEEEEEECCEEEEE----------ECCCCHHHHHHHHHHHHHHCC Q ss_conf 4554-6532347889989999997332----67225999819748896----------253421799999997543123 Q gi|254780768|r 141 LGTC-VPNRDVKRDILAAMKSAEALSE----LDVGQSAVSIGGRVVAL----------EGIEGTDSMLQRIVDCRNNGR 204 (281) Q Consensus 141 l~~~-~p~~~~~~dI~~g~~i~~~l~~----~DiGQsvVv~~g~Viai----------Ea~eGTD~mi~R~~~~~~~~~ 204 (281) ..++ ..+.. .++ .+.+++.|. -.+.+.||..+|.++.- |..+|=++|+.+.-++.+.|+ T Consensus 152 ~~~~~~~t~~--~~~---~~~l~~~Ga~~v~~~~~~~vVD~dg~iVTtpA~m~~~~i~ev~~gi~klV~~~l~l~~~g~ 225 (232) T 1vhq_A 152 FPLRLTIGTD--IDT---AEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAEEGG 225 (232) T ss_dssp SCCEECCCSC--HHH---HHHHHHTTCEECCCCTTCCEEETTTTEEEECGGGTCSSHHHHHHHHHHHHHHHHHHHC--- T ss_pred CCCCCEECCC--HHH---HHHHHHCCCEEEECCCCEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 5887303068--779---9999986994981578817996799889377310375889999999999999999998068 No 13 >3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Geobacillus stearothermophilus} SCOP: c.89.1.1 PDB: 4pfk_A* 6pfk_A 1mto_A* Probab=89.74 E-value=0.19 Score=28.73 Aligned_cols=76 Identities=20% Similarity=0.061 Sum_probs=50.2 Q ss_pred CCEEEEEECCCCHHH------HHHHHHHHCCCCEEEEE--ECCCCCCC--------CCCC---------CEEE---EEHH Q ss_conf 973999977980389------99999997899789999--54866731--------0388---------5678---7389 Q gi|254780768|r 1 MKRLLIIAGSGMLPY------YVAKAARLKNDEPVIAS--VLNECSFD--------WQDF---------ECRE---LPLG 52 (281) Q Consensus 1 M~kigIIAG~G~LP~------~ia~~~~~~g~~~~ii~--l~~~~~~~--------~~~~---------~~~~---~~ig 52 (281) |+||||+-..|.=|. -+.+.+...|.+++-+. +.|..+.+ ...+ .+.. ..-. T Consensus 1 mkrIaIltsGG~~pG~Na~i~~~v~~a~~~g~~v~g~~~G~~GL~~~~~~~l~~~~~~~~~~~gGs~lgssR~~~~~~~~ 80 (319) T 3pfk_A 1 MKRIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEFKTEE 80 (319) T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHHTTCEEEEESSHHHHHHTTCEEEECGGGGTTCTTCCSCTTCCCCCGGGSSHH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHH T ss_conf 98899988688757799999999999997799999984166976689952499898988985597500458888543212 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 999999999864954067702423 Q gi|254780768|r 53 DFCVLRSILHQYNIGRIVVAGAID 76 (281) Q Consensus 53 ~ig~li~~Lk~~~i~~ivmaG~V~ 76 (281) ...++++.|++++++.++++|+-. T Consensus 81 ~~~~~~~~l~~~~Id~li~iGG~~ 104 (319) T 3pfk_A 81 GQKKGIEQLKKHGIQGLVVIGGDG 104 (319) T ss_dssp HHHHHHHHHHHHTCCEEEEEECHH T ss_pred HHHHHHHHHHHHCCCEEEEECCHH T ss_conf 699999999971577599988858 No 14 >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Probab=89.38 E-value=1 Score=23.83 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=58.0 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEE-ECCCCCC-------CCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 97399997798038999999997899789999-5486673-------103885678738999999999986495406770 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIAS-VLNECSF-------DWQDFECRELPLGDFCVLRSILHQYNIGRIVVA 72 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~-l~~~~~~-------~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivma 72 (281) |+||=|..|.|-+=..+++.+.++|++++++. +...... ...+++....++.+...+.+.++..+++.|+.+ T Consensus 1 M~KILVTGgtGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~i~~Di~d~~~l~~~~~~~~~D~Vih~ 80 (347) T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 80 (347) T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 98899928874899999999997839899997988665166788750279818997616898999998743267479982 Q ss_pred CCCC Q ss_conf 2423 Q gi|254780768|r 73 GAID 76 (281) Q Consensus 73 G~V~ 76 (281) .... T Consensus 81 Aa~~ 84 (347) T 1orr_A 81 AGQV 84 (347) T ss_dssp CCCC T ss_pred CCCC T ss_conf 3323 No 15 >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Probab=88.36 E-value=1.2 Score=23.35 Aligned_cols=67 Identities=7% Similarity=0.061 Sum_probs=41.9 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCC-CCEEEEEHHHHHHHHHHHHHCCCCEEEE Q ss_conf 973999977980389999999978997899995486673-1038-8567873899999999998649540677 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSF-DWQD-FECRELPLGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~-~~~~-~~~~~~~ig~ig~li~~Lk~~~i~~ivm 71 (281) ++|||||. +|.|-+.++.+|++.|++++++.- ..+.+ .... ..+...++-+...+.++.+ .|+-|++ T Consensus 24 ~k~IgIlG-~GQLg~ml~~aA~~LGi~v~vld~-~~~pa~~va~ad~~i~~~~~D~~al~~~a~--~~DvIT~ 92 (403) T 3k5i_A 24 SRKVGVLG-GGQLGRMLVESANRLNIQVNVLDA-DNSPAKQISAHDGHVTGSFKEREAVRQLAK--TCDVVTA 92 (403) T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEES-TTCTTGGGCCSSCCEESCTTCHHHHHHHHT--TCSEEEE T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEC-CCCCHHHCCCCCEEEECCCCCHHHHHHHHH--CCCEEEE T ss_conf 98899986-879999999999978998999968-999866510052069778899999999986--1999998 No 16 >2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus} Probab=87.97 E-value=0.39 Score=26.64 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=39.9 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEE Q ss_conf 97399997798038999999997899789999548667310388567873899999999998649540677 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivm 71 (281) |.+||||.| |.|-+.++.+|++.|++++++.-...+.. ..+....+... .+.++.+ +|+-+++ T Consensus 1 ~~tigIlG~-GqL~~ml~~aAk~lGi~v~v~d~~~~~pa--~~vAd~~~d~~---~l~~~a~--~~DvIt~ 63 (365) T 2z04_A 1 MLTVGILGG-GQLGWMTILEGRKLGFKFHVLEDKENAPA--CRVADRCFRTG---QISEFVD--SCDIITY 63 (365) T ss_dssp -CEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSSSCHH--HHHSSEEECGG---GHHHHHH--HCSEEEE T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHCCHHCCHH---HHHHHHH--CCCEEEE T ss_conf 989999867-89999999999978998999956998976--67261542799---9999984--4999998 No 17 >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Probab=87.86 E-value=1.4 Score=22.78 Aligned_cols=75 Identities=21% Similarity=0.159 Sum_probs=52.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC--CCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9739999779803899999999789978999954866--73103885678738999999999986495406770242 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNEC--SFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~--~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) |++|=|..|+|-+=..+++.+.++|++++++.-.... ....+...+...++-+...+-+.++......++.+... T Consensus 1 MK~ILItGg~GfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~~~~~ 77 (330) T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAAD 77 (330) T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCC T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHCC T ss_conf 99899887898899999999997839899997888778535013680897546798999999985123102232003 No 18 >1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} Probab=87.85 E-value=0.32 Score=27.21 Aligned_cols=232 Identities=17% Similarity=0.139 Sum_probs=114.0 Q ss_pred CCEEEEEECCCCHHH------HHHHHHHHCCCCEEEEEECCCC------------CCCCCCC---------CEE---EEE Q ss_conf 973999977980389------9999999789978999954866------------7310388---------567---873 Q gi|254780768|r 1 MKRLLIIAGSGMLPY------YVAKAARLKNDEPVIASVLNEC------------SFDWQDF---------ECR---ELP 50 (281) Q Consensus 1 M~kigIIAG~G~LP~------~ia~~~~~~g~~~~ii~l~~~~------------~~~~~~~---------~~~---~~~ 50 (281) |+||||+-..|.=|- .+.+.+...|.+++-+ .+.- ..++.++ .+. ... T Consensus 1 mkrI~IltsGG~~pG~Na~i~~~v~~a~~~~~~v~g~--~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~ 78 (319) T 1zxx_A 1 MKRIGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGI--RYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAE 78 (319) T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHHTTTCEEEEE--CTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTS T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE--CCHHHHHCCCCEEECCHHHHHHHHHCCCCEECCCCCCCCCC T ss_conf 9889998847874669999999999999789989998--50178856899077999999888707985214688876643 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHH----------HH-----HHHCCCCHHHHHHHHH Q ss_conf 89999999999864954067702423210001110260357899999----------98-----7510480358999999 Q gi|254780768|r 51 LGDFCVLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKM----------IW-----QLVSGGNAAILKASID 115 (281) Q Consensus 51 ig~ig~li~~Lk~~~i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~----------l~-----~~~~~gDd~iL~~i~~ 115 (281) -.+..++.+.|++++++.++.+|+-. +++ +...+.+. +- .-..-|=|+.++.+.+ T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~iGGdg---S~~-------~a~~l~~~~i~vigIPkTIDNDl~~td~t~Gf~TA~~~~~~ 148 (319) T 1zxx_A 79 EEGQLAGIEQLKKHGIDAVVVIGGDG---SYH-------GALQLTRHGFNSIGLPGTIDNDIPYTDATIGYDTACMTAMD 148 (319) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHH---HHH-------HHHHHHHTTCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC---HHH-------HHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH T ss_conf 67789999999976998999937961---799-------99997753685677620016898884008689999999999 Q ss_pred HHHHC--------CCEEE---C----HHHCCHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCE Q ss_conf 99976--------97482---1----12225242035-433455465323478899899999973326722599981974 Q gi|254780768|r 116 LLESY--------GVSVV---G----AHEIVPELLVQ-VGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGR 179 (281) Q Consensus 116 ~fe~~--------G~~vi---~----~~~~l~~ll~~-~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ 179 (281) .+.+- .+-++ + +-....-+-.. .-++.-..|. +..++. ..+++.-....+.++||. T Consensus 149 ~i~~l~~~a~s~~rv~ivEvMGR~~G~lA~~~~la~~a~~iliPE~~~--~~~~~~---~~i~~~~~~~~~~~vVvv--- 220 (319) T 1zxx_A 149 AIDKIRDTASSHHRVFIVNVMGRNCGDIAMRVGVACGADAIVIPERPY--DVEEIA---NRLKQAQESGKDHGLVVV--- 220 (319) T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTCCHHHHHHHHHTTCSEEECTTSCC--CHHHHH---HHHHHHHHTTCCCEEEEE--- T ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCC--CHHHHH---HHHHHHHHCCCCCEEEEE--- T ss_conf 999999861246774899955753538999965415998898369999--889999---999999972897049999--- Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECC---------CCHHHHHHHHHCCCEE-EEEE Q ss_conf 88962534217999999975431234566771899934888753121066---------2799999999849909-9997 Q gi|254780768|r 180 VVALEGIEGTDSMLQRIVDCRNNGRILAGKSGVLVKMCKSQQDMRADLPS---------IGAKTVQNVIKAGLAG-IALE 249 (281) Q Consensus 180 ViaiEa~eGTD~mi~R~~~~~~~~~~~~~~~~ilvK~~K~~QD~r~DlP~---------IG~~Ti~~~~~ag~~g-iaie 249 (281) -|++.-.+.++....+ ..++=++...++.--|--.|+ .|...++.+.+-.-.. +++. T Consensus 221 ---sEG~~~~~~~~~~~~~----------~~~~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~G~tg~mvg~~ 287 (319) T 1zxx_A 221 ---AEGVMTADQFMAELKK----------YGDFDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIE 287 (319) T ss_dssp ---ETTTCCHHHHHHHHHH----------SSCCCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE T ss_pred ---ECCCCCCCHHHHHHHH----------CCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf ---5785454302578875----------158642334266533589999899999999999999999769998499999 Q ss_pred CCCEEEECHHHHHHHH Q ss_conf 3977998589999999 Q gi|254780768|r 250 AGKSLVLEKELVKKHA 265 (281) Q Consensus 250 a~~~lild~~~~i~~a 265 (281) .+++-..+-++++... T Consensus 288 ~~~~~~~pl~~~~~~~ 303 (319) T 1zxx_A 288 NGKVTSHDILDLFDES 303 (319) T ss_dssp TTEEEEEEHHHHTTCC T ss_pred CCEEEEEEHHHHHHCC T ss_conf 9999996199997057 No 19 >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Probab=87.39 E-value=1.5 Score=22.60 Aligned_cols=69 Identities=9% Similarity=-0.043 Sum_probs=46.4 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCC--CCCCEEEEEHHHHHHHHHHHHHCCCCEEEE Q ss_conf 97399997798038999999997899789999548667310--388567873899999999998649540677 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDW--QDFECRELPLGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~--~~~~~~~~~ig~ig~li~~Lk~~~i~~ivm 71 (281) |+||.|+.|+|.+=..+++++.++|++++++.-....-... .+.+....++.+...+-+.++ +|+-|+- T Consensus 3 ~kkIlV~GatG~iG~~l~~~ll~~g~~V~~~~R~~~~~~~~~~~~~~~v~~D~~d~~~l~~a~~--~~d~Vi~ 73 (206) T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIV 73 (206) T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEE T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCCCCEEEEECCCHHHHHHHHHC--CCCEEEE T ss_conf 8889999998689999999999786989999848365654335661589602433678999976--9979999 No 20 >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} Probab=87.34 E-value=0.98 Score=23.91 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=48.5 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 3999977980389999999978997899995486673103885678738999999999986495406770242 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) +=.+|-|.|..-..++++++... .+.+++|.+... ...+....-++++....+-...+++++++++++-.- T Consensus 5 ~rvlI~Gag~~g~~l~~~l~~~~-~y~vvgfiD~d~-~~~g~~i~gi~V~~~~~l~~~i~~~~i~~viia~p~ 75 (141) T 3nkl_A 5 KKVLIYGAGSAGLQLANMLRQGK-EFHPIAFIDDDR-KKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPS 75 (141) T ss_dssp EEEEEECCSHHHHHHHHHHHHSS-SEEEEEEECSCG-GGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTT T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEEEECCC-CCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 77999877989999999998789-966999995786-414148678203668787788864686389994588 No 21 >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Probab=85.13 E-value=2 Score=21.84 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=52.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC-CCCCCCC---CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 9739999779803899999999789978999954-8667310---38856787389999999999864954067702423 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVL-NECSFDW---QDFECRELPLGDFCVLRSILHQYNIGRIVVAGAID 76 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~-~~~~~~~---~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~ 76 (281) |+|+=|..|+|-+=..+++.+.++|++++.+.-. ......+ +++.+...++.+...+-..++......++-..... T Consensus 21 MkkVLVTGasGfiG~~lv~~L~~~g~~V~~id~~~~~~~~~l~~~~~i~~~~~Di~d~~~~~~~~~~~~~~~v~~~aa~~ 100 (333) T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASY 100 (333) T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEC T ss_conf 78799907887899999999997829899997998567877514899489982167989999997514875588610302 No 22 >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductase; oxidoreductase; 1.99A {Streptomyces coelicolor A3} Probab=84.64 E-value=2.1 Score=21.70 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=81.7 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEE---HHHHHHHHHHHHHC--CCCEEEEECC Q ss_conf 973999977980-38999999997899789999548667310388567873---89999999999864--9540677024 Q gi|254780768|r 1 MKRLLIIAGSGM-LPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELP---LGDFCVLRSILHQY--NIGRIVVAGA 74 (281) Q Consensus 1 M~kigIIAG~G~-LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~---ig~ig~li~~Lk~~--~i~~ivmaG~ 74 (281) |+|.+||.|.+. +=..+++.+-++|.+++++....+.. ++......+ -.++.++++...++ .++-+|-.=. T Consensus 20 M~K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG 96 (253) T 2nm0_A 20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP---EGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAG 96 (253) T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC---TTSEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEEECS T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCC---CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 989899947887899999999998799899998983222---68289992389999999999999997399879998997 Q ss_pred CCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCEEECHHHCCHHHCCC-CCCCCCCCCCHHHHH Q ss_conf 2321000111026035789999998751048035899999999976-97482112225242035-433455465323478 Q gi|254780768|r 75 IDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESY-GVSVVGAHEIVPELLVQ-VGSLGTCVPNRDVKR 152 (281) Q Consensus 75 V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~-G~~vi~~~~~l~~ll~~-~G~l~~~~p~~~~~~ 152 (281) +..+-.+.+.-.+.. .+.+ ...-.+--.+.++++..+.++ +=.++.........-.+ ...|+ .+|.. T Consensus 97 ~~~~~~~~~~~~e~~-----~~~~-~vNl~g~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~---asKaa-- 165 (253) T 2nm0_A 97 VTKDQLLMRMSEEDF-----TSVV-ETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYA---ASKAG-- 165 (253) T ss_dssp CCTTTC---CCTTTT-----HHHH-HHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHHHHHHHH---HHHHH-- T ss_pred CCCCCCHHHCCHHHH-----HHHH-HHHHHCHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHHHH---HHHHH-- T ss_conf 789998023999999-----9999-987204346889987740127992799984643367899968999---99999-- Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 899899999973326722599981 Q gi|254780768|r 153 DILAAMKSAEALSELDVGQSAVSI 176 (281) Q Consensus 153 dI~~g~~i~~~l~~~DiGQsvVv~ 176 (281) -..+-..++.++++..|-=-+|.- T Consensus 166 l~~ltk~lA~ela~~gIrVN~I~P 189 (253) T 2nm0_A 166 LVGFARSLARELGSRNITFNVVAP 189 (253) T ss_dssp HHHHHHHHHHHHCSSSEEEEEEEE T ss_pred HHHHHHHHHHHHHHHCCEEEEECC T ss_conf 999999999998786958987747 No 23 >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Probab=84.58 E-value=1.2 Score=23.27 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=51.5 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC-----CC--------CC--CCCCCEEEEEHHHHHHHHHHHHHCCC Q ss_conf 73999977980389999999978997899995486-----67--------31--03885678738999999999986495 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNE-----CS--------FD--WQDFECRELPLGDFCVLRSILHQYNI 66 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~-----~~--------~~--~~~~~~~~~~ig~ig~li~~Lk~~~i 66 (281) +||-|..|+|-+=..+++++.++|++++.+.-... .. .. ..+..+...++.+...+.+.++...+ T Consensus 3 kKILITG~sGfiGs~l~~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 82 (348) T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (348) T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHCCCC T ss_conf 70999789728999999999978598999977874223443206678888872378837999355673201002322675 Q ss_pred CEEEEECCC Q ss_conf 406770242 Q gi|254780768|r 67 GRIVVAGAI 75 (281) Q Consensus 67 ~~ivmaG~V 75 (281) ..++.+... T Consensus 83 ~~i~h~Aa~ 91 (348) T 1ek6_A 83 MAVIHFAGL 91 (348) T ss_dssp EEEEECCSC T ss_pred CEEEEEEEC T ss_conf 401220011 No 24 >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Probab=84.47 E-value=2.1 Score=21.65 Aligned_cols=158 Identities=12% Similarity=0.085 Sum_probs=85.9 Q ss_pred CCEEEEEECCCCHHHHH---HHHHHHCCCCEEEEEECCCCCCCCC--CCCE-EEEEHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 97399997798038999---9999978997899995486673103--8856-7873899999999998649540677024 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYV---AKAARLKNDEPVIASVLNECSFDWQ--DFEC-RELPLGDFCVLRSILHQYNIGRIVVAGA 74 (281) Q Consensus 1 M~kigIIAG~G~LP~~i---a~~~~~~g~~~~ii~l~~~~~~~~~--~~~~-~~~~ig~ig~li~~Lk~~~i~~ivmaG~ 74 (281) =+|++++...|--+.++ .+.++++|+++.++...+....... .... ....+. .......+=+++.|+ T Consensus 23 ~kkVaill~dgf~~~E~~~p~~~l~~aG~~v~~vs~~~~~~v~~~~g~~~v~~d~~l~-------dv~~~~yDaliiPGG 95 (193) T 1oi4_A 23 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSID-------EVTPAEFDALLLPGG 95 (193) T ss_dssp CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGG-------GCCGGGCSEEEECCB T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCEEEECCCCHH-------HCCHHHCCEEEECCC T ss_conf 8779999579762999999999999689989999679997447378997895577389-------989624939998998 Q ss_pred CCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHH--HH Q ss_conf 2321000111026035789999998751048035899999999976974821122252420354334554653234--78 Q gi|254780768|r 75 IDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDV--KR 152 (281) Q Consensus 75 V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~--~~ 152 (281) -. +. .+ ..|..++..+.++ .++|- .+.+----|-.|...|.+.+++.+..- .. T Consensus 96 ~~--~~----------------~l-----~~~~~l~~~l~~~-~~~~k-~i~aIC~g~~~La~aGlL~Gr~~T~~~~~~~ 150 (193) T 1oi4_A 96 HS--PD----------------YL-----RGDNRFVTFTRDF-VNSGK-PVFAICHGPQLLISADVIRGRKLTAVKPIII 150 (193) T ss_dssp TH--HH----------------HH-----TTSHHHHHHHHHH-HHTTC-CEEEETTTHHHHHHHTCCTTCEECCCGGGHH T ss_pred CC--HH----------------HH-----HHCHHHHHHHHHH-HHHCC-EEECCCHHHHHHHHCCCCCCCEEECCCCHHH T ss_conf 30--86----------------76-----3195889999998-86066-0340470789998778789989982588899 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHH Q ss_conf 899899999973326722599981974889625342179999999754 Q gi|254780768|r 153 DILAAMKSAEALSELDVGQSAVSIGGRVVALEGIEGTDSMLQRIVDCR 200 (281) Q Consensus 153 dI~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD~mi~R~~~~~ 200 (281) ++ +..+.-=+-|.+||.+++++.-- |+......+..+. T Consensus 151 ~l-------~~~ga~~~~~~~VVdd~~iITa~---g~~~~~~fa~~~i 188 (193) T 1oi4_A 151 DV-------KNAGAEFYDQEVVVDKDQLVTSR---TPDDLPAFNREAL 188 (193) T ss_dssp HH-------HHTTCEECCSSCEEETTTEEEES---SGGGHHHHHHHHH T ss_pred HH-------HHCCCEEECCCEEEECCEEEECC---CHHHHHHHHHHHH T ss_conf 99-------97799897799899999799899---7627999999999 No 25 >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus VF5} SCOP: a.100.1.12 c.2.1.6 Probab=83.48 E-value=1.6 Score=22.54 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=29.1 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9739999779803899999999789978999954 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVL 34 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~ 34 (281) |+||+|| |-|..=--+|++++++|+++.|.++. T Consensus 1 Mk~I~Ii-G~G~mG~sla~~L~~~g~~~~V~~~d 33 (281) T 2g5c_A 1 MQNVLIV-GVGFMGGSFAKSLRRSGFKGKIYGYD 33 (281) T ss_dssp CCEEEEE-SCSHHHHHHHHHHHHTTCCSEEEEEC T ss_pred CCEEEEE-CCCHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 9789999-23989999999998169984899998 No 26 >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Probab=83.03 E-value=1.9 Score=21.98 Aligned_cols=75 Identities=20% Similarity=0.147 Sum_probs=49.4 Q ss_pred CEEEEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCC-C----------CC--CCCCCEEEEEHHHHHHHHHHHHHCCCC Q ss_conf 73999977-9803899999999789978999954866-7----------31--038856787389999999999864954 Q gi|254780768|r 2 KRLLIIAG-SGMLPYYVAKAARLKNDEPVIASVLNEC-S----------FD--WQDFECRELPLGDFCVLRSILHQYNIG 67 (281) Q Consensus 2 ~kigIIAG-~G~LP~~ia~~~~~~g~~~~ii~l~~~~-~----------~~--~~~~~~~~~~ig~ig~li~~Lk~~~i~ 67 (281) .|++||-| +|-+=..+++.+.++|++++++...... + .. .+++.+...++.+...+-+.++.++++ T Consensus 1 ~k~~LVTGatGfiG~~L~~~Ll~~g~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~D 80 (372) T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372) T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC T ss_conf 98899948887899999999997859899997898655656688887503204897599985478989999998614997 Q ss_pred EEEEECCCC Q ss_conf 067702423 Q gi|254780768|r 68 RIVVAGAID 76 (281) Q Consensus 68 ~ivmaG~V~ 76 (281) .|+-+.... T Consensus 81 ~ViHlAa~~ 89 (372) T 1db3_A 81 EVYNLGAMS 89 (372) T ss_dssp EEEECCCCC T ss_pred EEEECCHHH T ss_conf 999841131 No 27 >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Probab=82.82 E-value=1.4 Score=22.80 Aligned_cols=70 Identities=10% Similarity=0.143 Sum_probs=48.0 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCC--CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 97399997798038999999997899789999548667310--38856787389999999999864954067702 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDW--QDFECRELPLGDFCVLRSILHQYNIGRIVVAG 73 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~--~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG 73 (281) |+||.|+.|+|.+=..+++.+..+|++++++.- +...... ++......++.+...+.+.++ +++-|+.+- T Consensus 4 m~KIlItGatG~iG~~l~~~Ll~~g~~V~~l~R-~~~~~~~~~~~~~~i~~D~~d~~~l~~~~~--~~d~vi~~~ 75 (227) T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVR-HPEKIKIENEHLKVKKADVSSLDEVCEVCK--GADAVISAF 75 (227) T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECS-CGGGCCCCCTTEEEECCCTTCHHHHHHHHT--TCSEEEECC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC-CHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCCCCEEEC T ss_conf 999999889988999999999978498999986-847622246623776135554666898860--775110341 No 28 >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Probab=82.50 E-value=0.85 Score=24.34 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=44.9 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC-CC-CCCEEEE--------EHHHHHHHHHHHHHCCCCEEE Q ss_conf 999779803899999999789978999954866731-03-8856787--------389999999999864954067 Q gi|254780768|r 5 LIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFD-WQ-DFECREL--------PLGDFCVLRSILHQYNIGRIV 70 (281) Q Consensus 5 gIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~-~~-~~~~~~~--------~ig~ig~li~~Lk~~~i~~iv 70 (281) =|||+.|.....++++|++.|++++.+.=....... .. ....+.+ +.-.+..+++..++.+|+-|. T Consensus 9 vLianrGeia~ri~ra~relGi~tVav~s~~D~~s~~~~~AD~~~~i~~~~~~~~sYld~e~Ii~ia~~~~~daIh 84 (461) T 2dzd_A 9 VLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIH 84 (461) T ss_dssp EEECSCHHHHHHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEE T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEE T ss_conf 9998972999999999998799699992847737899878999999189887332226999999999997869998 No 29 >2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ... Probab=82.49 E-value=2.5 Score=21.13 Aligned_cols=72 Identities=14% Similarity=0.049 Sum_probs=47.7 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC--CCEEEEE-------HHHHHHHHHHHHHCCCCEEEE Q ss_conf 9739999779803899999999789978999954866731038--8567873-------899999999998649540677 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQD--FECRELP-------LGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~--~~~~~~~-------ig~ig~li~~Lk~~~i~~ivm 71 (281) |-|==|||..|.....++++|+.-|++.+.+.=...++...-. ...+.+. .-.+..+++..++.+|+-+ . T Consensus 1 m~~kvLianrGeiA~riira~relGi~tVav~s~~D~~s~~v~~ADe~~~i~~~~~~~sYld~~~Ii~~a~~~g~dai-h 79 (449) T 2w70_A 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAI-H 79 (449) T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCCEE-E T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHHCCCCHHHCCEEEECCCCCHHHHHCCHHHHHHHHHHCCCCEE-E T ss_conf 964199989739999999999986993999837044158897779899984898624200489999999988199999-6 Q ss_pred EC Q ss_conf 02 Q gi|254780768|r 72 AG 73 (281) Q Consensus 72 aG 73 (281) -| T Consensus 80 pG 81 (449) T 2w70_A 80 PG 81 (449) T ss_dssp CC T ss_pred CC T ss_conf 47 No 30 >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Probab=81.94 E-value=1.6 Score=22.56 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=31.1 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 97399997798038999999997899789999548667 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECS 38 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~ 38 (281) | ||||| |.|..=..+|+.+.++|+++++..-..++. T Consensus 20 M-KIgII-G~G~mG~~lA~~L~~~G~~V~v~~r~~~aa 55 (209) T 2raf_A 20 M-EITIF-GKGNMGQAIGHNFEIAGHEVTYYGSKDQAT 55 (209) T ss_dssp C-EEEEE-CCSHHHHHHHHHHHHTTCEEEEECTTCCCS T ss_pred C-EEEEE-CCHHHHHHHHHHHHHCCCEEEEECCCHHHH T ss_conf 8-89998-843999999999997799689942747888 No 31 >3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis} Probab=80.91 E-value=1.1 Score=23.64 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=43.4 Q ss_pred CCEEEEEECCCCHH-----HHHHHHHHHC--C-C-CEEEEEECCCCCCC--CCCCCEEEEEHHHHHHHHHHHHHCCCCEE Q ss_conf 97399997798038-----9999999978--9-9-78999954866731--03885678738999999999986495406 Q gi|254780768|r 1 MKRLLIIAGSGMLP-----YYVAKAARLK--N-D-EPVIASVLNECSFD--WQDFECRELPLGDFCVLRSILHQYNIGRI 69 (281) Q Consensus 1 M~kigIIAG~G~LP-----~~ia~~~~~~--g-~-~~~ii~l~~~~~~~--~~~~~~~~~~ig~ig~li~~Lk~~~i~~i 69 (281) |++||||.|-|.+. ..+.+..... + + +.+++......+.. +.+.+ .......+.+..+.|.+.+|+-+ T Consensus 2 Mk~IGIiGGmgp~at~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~L~~~g~~~i 80 (231) T 3ojc_A 2 MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGD-WQTAAQLLSNAAISLKHAGAEVI 80 (231) T ss_dssp CCCEEEEECTTHHHHHHHHHHHHHHHHHHHCTTCCCCEEEEECCHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCCEE T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCEE T ss_conf 97699970638899999999999998875477678668995388532100234688-10699999999999997699999 Q ss_pred EEECCCC Q ss_conf 7702423 Q gi|254780768|r 70 VVAGAID 76 (281) Q Consensus 70 vmaG~V~ 76 (281) +++=.-. T Consensus 81 viaCNTa 87 (231) T 3ojc_A 81 VVCTNTM 87 (231) T ss_dssp EECSSGG T ss_pred EECCHHH T ss_conf 9763688 No 32 >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Probab=80.61 E-value=2.3 Score=21.37 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=28.7 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9739999779803899999999789978999954 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVL 34 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~ 34 (281) |+||+|| |-|..=.-+|+.++++|+.+.|+++. T Consensus 33 Mk~I~II-GlG~mG~siA~~L~~~g~~~~V~g~D 65 (314) T 3ggo_A 33 MQNVLIV-GVGFMGGSFAKSLRRSGFKGKIYGYD 65 (314) T ss_dssp CSEEEEE-SCSHHHHHHHHHHHHTTCCSEEEEEC T ss_pred CCEEEEE-EECHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 8779998-20889999999998069998899997 No 33 >3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* Probab=80.56 E-value=2.2 Score=21.58 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=47.4 Q ss_pred CCE-EEEE-ECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 973-9999-77980389999999978997899995486673103885678738999999999986495406770242 Q gi|254780768|r 1 MKR-LLII-AGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 1 M~k-igII-AG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) |+| ||++ +|-|-|.+ .+++++.--+.-++.+.+.+...+.+....++ ..-.-.++++|.+++|+-+|+|=.- T Consensus 4 m~~pIgvfDSGvGGLsv--l~~l~~~lP~~~~iY~~D~~~~PYG~ks~~ei-~~~~~~~~~~l~~~~~~~iViACNT 77 (269) T 3ist_A 4 MKQAIGFIDSGVGGLTV--VREVLKQLPHEQVYYLGDTARCPYGPRDKEEV-AKFTWEMTNFLVDRGIKMLVIACNT 77 (269) T ss_dssp SCCCEEEEESSSTTHHH--HHHHHHHCTTCCEEEEECGGGCCCTTSCHHHH-HHHHHHHHHHHHHTTCSEEEECCHH T ss_pred CCCCEEEEECCCCHHHH--HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 77968999589757999--99999978999989994488999899999999-9999999999986699989994685 No 34 >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Probab=80.25 E-value=2.6 Score=21.07 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=43.3 Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEE-HHHHHHHHHHHHHCC Q ss_conf 97399997-798038999999997899789999548667310388567873-899999999998649 Q gi|254780768|r 1 MKRLLIIA-GSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELP-LGDFCVLRSILHQYN 65 (281) Q Consensus 1 M~kigIIA-G~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~-ig~ig~li~~Lk~~~ 65 (281) |++|+||= |.|++-- +.++++..|.++.++. ...+.++.+.+...+| +|.++..++.|++.+ T Consensus 4 M~~I~IIDyg~GNi~S-v~~aL~~lg~~~~ii~--~~~~~~i~~~d~IILPGVGsF~~~m~~L~~~~ 67 (555) T 1jvn_A 4 MPVVHVIDVESGNLQS-LTNAIEHLGYEVQLVK--SPKDFNISGTSRLILPGVGNYGHFVDNLFNRG 67 (555) T ss_dssp SCEEEEECCSCSCCHH-HHHHHHHTTCEEEEES--SGGGCCSTTCSCEEEEECSCHHHHHHHHHHTT T ss_pred CCEEEEEECCCCHHHH-HHHHHHHCCCCEEEEE--CCCHHHHHCCCEEEECCCCCHHHHHHHHHHCC T ss_conf 9989999799868999-9999998699769996--87866884599899999997799999999879 No 35 >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} Probab=79.88 E-value=1.7 Score=22.39 Aligned_cols=69 Identities=7% Similarity=0.034 Sum_probs=45.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCC-CCC-CCCEEEE-------EHHHHHHHHHHHHHCCCCEEE Q ss_conf 973999977980389999999978997899995486673-103-8856787-------389999999999864954067 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSF-DWQ-DFECREL-------PLGDFCVLRSILHQYNIGRIV 70 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~-~~~-~~~~~~~-------~ig~ig~li~~Lk~~~i~~iv 70 (281) |+|| |||+.|.-...++++|+..|++++++.=....+. ... -...+.+ +.-....+++..++++++-|. T Consensus 6 ~kki-LianrGeiA~riiraarelG~~tV~V~s~~D~~a~~~~~ADe~~~i~~~~~~~sYld~e~i~~ia~~~~~daI~ 83 (446) T 3ouz_A 6 IKSI-LIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIF 83 (446) T ss_dssp CCEE-EECCCHHHHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEEE T ss_pred CCEE-EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEE T ss_conf 5389-99898699999999999869919999275644576676699999859987320134999999999997949998 No 36 >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus HB8} PDB: 1x1e_A* 2ekq_A Probab=79.25 E-value=3.3 Score=20.41 Aligned_cols=167 Identities=14% Similarity=0.034 Sum_probs=84.3 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEE--EHHHHHHHHHHHHHC--CCCEEEEECCC Q ss_conf 973999977980-3899999999789978999954866731038856787--389999999999864--95406770242 Q gi|254780768|r 1 MKRLLIIAGSGM-LPYYVAKAARLKNDEPVIASVLNECSFDWQDFECREL--PLGDFCVLRSILHQY--NIGRIVVAGAI 75 (281) Q Consensus 1 M~kigIIAG~G~-LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~--~ig~ig~li~~Lk~~--~i~~ivmaG~V 75 (281) |+|.+||.|.+. +=+.+++.+-+.|.+++++....+......+...... +-.++..+++...++ .++-+|-.-.+ T Consensus 1 M~K~alVTGas~GIG~a~a~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iDilVnnAG~ 80 (239) T 2ekp_A 1 MERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAAAV 80 (239) T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECCCC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 99889997796689999999999879999999799999998559779994358899999999999981999899989998 Q ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-EEECHHHCCHHHCC-CCCCCCCCCCCHHHHHH Q ss_conf 32100011102603578999999875104803589999999997697-48211222524203-54334554653234788 Q gi|254780768|r 76 DRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGV-SVVGAHEIVPELLV-QVGSLGTCVPNRDVKRD 153 (281) Q Consensus 76 ~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~-~vi~~~~~l~~ll~-~~G~l~~~~p~~~~~~d 153 (281) ...-.+.+.-.+ ...+.+ ...-++--.+.+++...+.+++. +++-.......... +.+.. ....+|.. - T Consensus 81 ~~~~~~~~~~~e-----~~~~~~-~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~~-~Y~asKaa--l 151 (239) T 2ekp_A 81 NVRKPALELSYE-----EWRRVL-YLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIP-AYTTAKTA--L 151 (239) T ss_dssp CCCCCTTTCCHH-----HHHHHH-HHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTSCCH-HHHHHHHH--H T ss_pred CCCCCHHHCCHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCH-HHHHHHHH--H T ss_conf 999990449999-----999999-99659999999999998788328966998424773468884107-89999999--9 Q ss_pred HHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 99899999973326722599981 Q gi|254780768|r 154 ILAAMKSAEALSELDVGQSAVSI 176 (281) Q Consensus 154 I~~g~~i~~~l~~~DiGQsvVv~ 176 (281) ..+-..+++++++..|-=-+|.- T Consensus 152 ~~ltk~lA~e~~~~gIrVN~I~P 174 (239) T 2ekp_A 152 LGLTRALAKEWARLGIRVNLLCP 174 (239) T ss_dssp HHHHHHHHHHHGGGTEEEEEEEE T ss_pred HHHHHHHHHHHHHHCCEEEEEEC T ss_conf 99999999996144919999951 No 37 >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* Probab=78.16 E-value=3.4 Score=20.29 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=26.9 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 97399997798038999999997899789999 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIAS 32 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~ 32 (281) |.|||+|+=.|++ ....++++..|.++.++. T Consensus 1 m~kIGvl~~~Gn~-~s~~~al~~~g~~~~~i~ 31 (196) T 2nv0_A 1 MLTIGVLGLQGAV-REHIHAIEACGAAGLVVK 31 (196) T ss_dssp CCEEEEECSSSCC-HHHHHHHHHTTCEEEEEC T ss_pred CCEEEEEECCCCH-HHHHHHHHHCCCCEEEEC T ss_conf 9499999458829-999999998899299999 No 38 >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Probab=77.52 E-value=3.6 Score=20.07 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=53.7 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC-------C--CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 739999779803899999999789978999954866731-------0--3885678738999999999986495406770 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFD-------W--QDFECRELPLGDFCVLRSILHQYNIGRIVVA 72 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~-------~--~~~~~~~~~ig~ig~li~~Lk~~~i~~ivma 72 (281) =||-|+.|+|-+=..+++.+.++|++++.+.-...+... + .++.....++.+...+-+.++..+++.|+-+ T Consensus 1 MkILItGatGfiG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~d~Vihl 80 (338) T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEC T ss_conf 96999898878999999999978498999978887635566778861578876998017898999999975699899989 Q ss_pred CCCC Q ss_conf 2423 Q gi|254780768|r 73 GAID 76 (281) Q Consensus 73 G~V~ 76 (281) +... T Consensus 81 Aa~~ 84 (338) T 1udb_A 81 AGLK 84 (338) T ss_dssp CSCC T ss_pred CCCC T ss_conf 8766 No 39 >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A* Probab=77.37 E-value=3.7 Score=20.04 Aligned_cols=76 Identities=20% Similarity=0.062 Sum_probs=55.1 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCC--CC------CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 973999977980389999999978997899995486673--10------3885678738999999999986495406770 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSF--DW------QDFECRELPLGDFCVLRSILHQYNIGRIVVA 72 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~--~~------~~~~~~~~~ig~ig~li~~Lk~~~i~~ivma 72 (281) ++|+=|..|.|-+=..+++.+.++|++++.+........ .+ +++.....++.+...+...++..+++.|+.+ T Consensus 3 ~KkilVTG~tGfIGs~lv~~Ll~~g~~V~~~dr~~~~~~~~~~~~~~~~~~~~~v~~Di~d~~~~~~~~~~~~~d~V~hl 82 (345) T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNL 82 (345) T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEEC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEC T ss_conf 09899989987899999999997839899998999764345588743268977998036785772455623797199973 Q ss_pred CCCC Q ss_conf 2423 Q gi|254780768|r 73 GAID 76 (281) Q Consensus 73 G~V~ 76 (281) .... T Consensus 83 Aa~~ 86 (345) T 2z1m_A 83 AAQS 86 (345) T ss_dssp CCCC T ss_pred CCCC T ss_conf 5337 No 40 >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Probab=75.50 E-value=3.5 Score=20.17 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=60.5 Q ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-CCCEEEEEHHHHHHHHHHHHHCCCCEE--EEECCCCCCCCHH Q ss_conf 9977980389999999978997899995486673103-885678738999999999986495406--7702423210001 Q gi|254780768|r 6 IIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQ-DFECRELPLGDFCVLRSILHQYNIGRI--VVAGAIDRRPNVQ 82 (281) Q Consensus 6 IIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~-~~~~~~~~ig~ig~li~~Lk~~~i~~i--vmaG~V~krP~~~ 82 (281) +|+|.|.+-..+++.+...|++++++.-..+.-..+. .+....+. |+. .-...|++.++.+. +++- .+ -.. . T Consensus 23 iI~G~g~~G~~ia~~L~~~g~~vvvId~d~~~~~~l~~~~~~~~i~-GD~-~d~~~L~~a~i~~a~~vI~~-t~-dDe-~ 97 (155) T 2g1u_A 23 VIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVV-GDA-AEFETLKECGMEKADMVFAF-TN-DDS-T 97 (155) T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEE-SCT-TSHHHHHTTTGGGCSEEEEC-SS-CHH-H T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCEEEE-CCC-CCHHHHHHCCHHHCCEEEEC-CC-CHH-H T ss_conf 9989989999999999978997999946889844312033413697-776-00788874182246899991-49-849-9 Q ss_pred HHCCCHHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCC Q ss_conf 1102603578999999875----10480358999999999769748211222524203 Q gi|254780768|r 83 DLCFSIKDSLRISKMIWQL----VSGGNAAILKASIDLLESYGVSVVGAHEIVPELLV 136 (281) Q Consensus 83 ~l~~D~~~~~~l~k~l~~~----~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~ 136 (281) ++ ... .+.+-++.. .+-.|..- ...|++-|..++.+.....+.+. T Consensus 98 Nl----~~~-l~ak~~~~~~~iIar~~~~~~----~~~~~~~G~~vI~p~~~~a~~i~ 146 (155) T 2g1u_A 98 NF----FIS-MNARYMFNVENVIARVYDPEK----IKIFEENGIKTICPAVLMIEKVK 146 (155) T ss_dssp HH----HHH-HHHHHTSCCSEEEEECSSGGG----HHHHHTTTCEEECHHHHHHHHHH T ss_pred HH----HHH-HHHHHHCCCCEEEEEECCHHH----HHHHHHCCCCEECCHHHHHHHHH T ss_conf 99----999-999998799839999888889----99999779999861799999999 No 41 >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Probab=75.38 E-value=1.8 Score=22.15 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=82.7 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC----CCC---------CC-----CCCCEEEEEHHHHHHHHHHHHHC Q ss_conf 3999977980389999999978997899995486----673---------10-----38856787389999999999864 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNE----CSF---------DW-----QDFECRELPLGDFCVLRSILHQY 64 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~----~~~---------~~-----~~~~~~~~~ig~ig~li~~Lk~~ 64 (281) |+.+.-=.|..-...++.+.+-|-+++. +.... ... +. .+..+..++-...-..+..+-+. T Consensus 9 ~v~v~G~tg~~g~~~~~~~~~ygt~vv~-gVnP~kgG~~v~G~Pvy~sV~e~~~~~~~d~avI~VP~~~v~~a~~e~~~~ 87 (288) T 2nu8_A 9 KVICQGFTGSQGTFHSEQAIAYGTKMVG-GVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDA 87 (288) T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHHHHHT T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEE-EECCCCCCCEEECCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC T ss_conf 3999888686879999999985896799-867997863665864658699986243875699714858999999999977 Q ss_pred CCCEEE-EECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHC---CHH------- Q ss_conf 954067-702423210001110260357899999987510480358999999999769748211222---524------- Q gi|254780768|r 65 NIGRIV-VAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEI---VPE------- 133 (281) Q Consensus 65 ~i~~iv-maG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~---l~~------- 133 (281) +|+.+| +...|. . .. . ..+...-+++|+++++++-+ .|. T Consensus 88 Gik~~viit~Gf~-e----------~~----------------~---~~l~~~a~~~g~riiGPNc~Gii~p~~~~~~~~ 137 (288) T 2nu8_A 88 GIKLIITITEGIP-T----------LD----------------M---LTVKVKLDEAGVRMIGPNTPGVITPGECKIGIQ 137 (288) T ss_dssp TCSEEEECCCCCC-H----------HH----------------H---HHHHHHHHHHTCEEECSSCCEEEETTTEEEESS T ss_pred CCCEEEEECCCCC-C----------CC----------------H---HHHHHHHHHCCCEEECCCCCCCCCCCHHHCCCC T ss_conf 9978999648987-1----------13----------------8---999998752497897899766406436541778 Q ss_pred --HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHH--HHHHH Q ss_conf --203543345546532347889989999997332672259998197488962534217--99999 Q gi|254780768|r 134 --LLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGRVVALEGIEGTD--SMLQR 195 (281) Q Consensus 134 --ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD--~mi~R 195 (281) ....+|.++-.. ..=..+..++..+....+|||.+|.-|. |+.-|++ .+++. T Consensus 138 ~~~~~~~G~i~~iS------qSG~l~~~i~~~~~~~giG~S~~vs~Gn----~a~v~~~~~D~l~~ 193 (288) T 2nu8_A 138 PGHIHKPGKVGIVS------RSGTLTYEAVKQTTDYGFGQSTCVGIGG----DPIPGSNFIDILEM 193 (288) T ss_dssp CTTSCCEEEEEEEE------SCHHHHHHHHHHHHHTTCCEEEEEECCS----SSSCSSCHHHHHHH T ss_pred CCCCCCCCCCEEEE------ECCHHHHHHHHHHHHCCCCEEEEEECCC----CCCCCCCHHHHHHH T ss_conf 74335788723897------0341799999986445998768984687----75457539999999 No 42 >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Probab=75.34 E-value=2.3 Score=21.47 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=46.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC-CC-CCCEEEE------EHHHHHHHHHHHHHCCCCEEE Q ss_conf 9739999779803899999999789978999954866731-03-8856787------389999999999864954067 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFD-WQ-DFECREL------PLGDFCVLRSILHQYNIGRIV 70 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~-~~-~~~~~~~------~ig~ig~li~~Lk~~~i~~iv 70 (281) |+| =|||+.|.....++++|+..|++++.+.=...++.. .. ....+.+ +.-.+..++...++.+++-|. T Consensus 2 ~~k-iLianrGeiA~riira~~elGi~tVaV~s~~D~~a~~~~~ADe~~~ig~~~~~sYl~~~~ii~ia~~~~~daih 78 (451) T 1ulz_A 2 VNK-VLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQRIINLALEVGADAIH 78 (451) T ss_dssp CSS-EEECCCHHHHHHHHHHHHHHTCCEEEEECGGGTTCHHHHHSSEEEECCSSTTHHHHCHHHHHHHHHHTTCCEEE T ss_pred CCE-EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEE T ss_conf 533-99989719999999999985996999868456458897788898987997788766489999999983999996 No 43 >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Probab=75.34 E-value=3.8 Score=19.99 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=43.5 Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC----C--CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 97-39999779803899999999789978999954866731----0--3885678738999999999986495406770 Q gi|254780768|r 1 MK-RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFD----W--QDFECRELPLGDFCVLRSILHQYNIGRIVVA 72 (281) Q Consensus 1 M~-kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~----~--~~~~~~~~~ig~ig~li~~Lk~~~i~~ivma 72 (281) |+ ||.|+.|.|.+=..+++++.++|++++++.-....... + .+......++.....+...+. ++..++.+ T Consensus 10 mk~KIlVtGatG~iG~~l~~~Ll~~g~~V~~l~R~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~~--~~~~vi~~ 86 (318) T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK--KVDVVISA 86 (318) T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEEC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHC--CCCEEEEC T ss_conf 998399989996899999999997869799997897423667776411881899911443033677614--45577642 No 44 >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, hydrolase, stress response; 2.15A {Deinococcus radiodurans} Probab=75.15 E-value=4.2 Score=19.65 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=84.3 Q ss_pred CEEEEEECCCCHHHHHH---HHHHHCCCCEEEEEECCCCCCCCCC-CC-EEEEEHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 73999977980389999---9999789978999954866731038-85-6787389999999999864954067702423 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVA---KAARLKNDEPVIASVLNECSFDWQD-FE-CRELPLGDFCVLRSILHQYNIGRIVVAGAID 76 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia---~~~~~~g~~~~ii~l~~~~~~~~~~-~~-~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~ 76 (281) +|+++++..|--+.++. ..++..|+++.+++..+........ .. ...+.. ...+........+=+++.|+.. T Consensus 10 KkVail~~~g~~~~E~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~~~~~~~~~---d~~l~~~~~~~yDaliipGG~~ 86 (190) T 2vrn_A 10 KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRV---DHVVSEVQVSDYDGLLLPGGTV 86 (190) T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEEC---SEEGGGCCGGGCSEEEECCCTH T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCEEEEC---CCCHHHCCHHHCEEEEECCCCC T ss_conf 9999992699589999999999997899999996479817985265246516764---6657888974764999268776 Q ss_pred CCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 21000111026035789999998751048035899999999976974821122252420354334554653234788998 Q gi|254780768|r 77 RRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILA 156 (281) Q Consensus 77 krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~dI~~ 156 (281) -| . .+ ..|..+++.+.++.+ +| +++.+--.-|-+|...|++.+++-|.... + T Consensus 87 -~~--~--------------~l-----~~~~~l~~~l~~~~~-~~-k~i~aiC~G~~~La~aGlL~gr~~T~~~~--~-- 138 (190) T 2vrn_A 87 -NP--D--------------KL-----RLEEGAMKFVRDMYD-AG-KPIAAICHGPWSLSETGIAQGLKMTSWSS--L-- 138 (190) T ss_dssp -HH--H--------------HH-----TTCHHHHHHHHHHHH-TT-CCEEEC-CTTHHHHHTTTTTTCEECCCGG--G-- T ss_pred -CH--H--------------HH-----CCCHHHHHHHHHHHH-CC-CCCCCCCHHHHHHHHCCCCCCCEEEECCC--H-- T ss_conf -22--1--------------21-----028899999999875-27-74003342899999779877985984742--8-- Q ss_pred HHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHH Q ss_conf 999999733267225999819748896253421799999997543 Q gi|254780768|r 157 AMKSAEALSELDVGQSAVSIGGRVVALEGIEGTDSMLQRIVDCRN 201 (281) Q Consensus 157 g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD~mi~R~~~~~~ 201 (281) ...++..+.-=+-+.||+.+ .++.- .|...++..+..+.+ T Consensus 139 -~~~l~~~g~~~~~~~vV~Dg-~iiTa---~g~~~~~~fa~~ive 178 (190) T 2vrn_A 139 -KRELTLAGAQWVDEECVTDK-GVVTS---RKPDDLPAFNKKIVE 178 (190) T ss_dssp -HHHHHHTTCEECCCSCEEET-TEEEC---SSGGGHHHHHHHHHH T ss_pred -HHHHHHCCCEEECCCEEEEC-CEEEC---CCHHHHHHHHHHHHH T ss_conf -99999779979079999979-99989---777389999999999 No 45 >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Probab=74.62 E-value=4.3 Score=19.57 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=30.7 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9739999779803899999999789978999954 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVL 34 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~ 34 (281) |+||-|..|.|.+=..+++++.++|++++++.-. T Consensus 4 M~KILItGatG~iG~~l~~~L~~~G~~V~~~~R~ 37 (321) T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARP 37 (321) T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 8889998998289999999999789908999899 No 46 >3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp} Probab=74.33 E-value=4.4 Score=19.52 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=45.0 Q ss_pred CCE--EEEE-ECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 973--9999-7798038999999997899789999548667310388567873899999999998649540677024 Q gi|254780768|r 1 MKR--LLII-AGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGA 74 (281) Q Consensus 1 M~k--igII-AG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~ 74 (281) |++ ||++ +|-|-|.+ ++++++.--+--++.+.+.+...+.+.+..++ ..-...+.++|.+++|+-+|+|=. T Consensus 5 m~~~pIgifDSGiGGLtv--~~~l~~~lP~~~~iY~~D~~~~PYG~ks~e~i-~~~~~~~~~~l~~~~~k~IViACN 78 (268) T 3out_A 5 LDNRPIGVFDSGIGGLTI--VKNLMSILPNEDIIYFGDIARIPYGTKSRATI-QKFAAQTAKFLIDQEVKAIIIACN 78 (268) T ss_dssp CTTSCEEEEESSSTTHHH--HHHHHHHCTTCCEEEEECTTTCCCTTSCHHHH-HHHHHHHHHHHHHTTCSEEEECCH T ss_pred CCCCCEEEEECCCCHHHH--HHHHHHHCCCCCEEEEEECCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEEECC T ss_conf 679988999689758999--99999988999989997078899898999999-999999999998659998999468 No 47 >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} Probab=73.58 E-value=2.5 Score=21.24 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=27.8 Q ss_pred CC-EEEEEE-----CCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 97-399997-----7980389999999978997899995 Q gi|254780768|r 1 MK-RLLIIA-----GSGMLPYYVAKAARLKNDEPVIASV 33 (281) Q Consensus 1 M~-kigIIA-----G~G~LP~~ia~~~~~~g~~~~ii~l 33 (281) |+ ||+|++ |.+..-..+++++.++|+++.++.. T Consensus 14 mkMKI~iv~~P~~GG~~~~~~~La~~L~~~Gh~V~vit~ 52 (394) T 2jjm_A 14 MKLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITS 52 (394) T ss_dssp -CCEEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECS T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 547799989999995999999999999977998999947 No 48 >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Probab=73.48 E-value=4.6 Score=19.39 Aligned_cols=73 Identities=23% Similarity=0.194 Sum_probs=56.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 9739999779803899999999789978999954866731038856787389999999999864954067702423 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAID 76 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~ 76 (281) | |+-|..|+|-+=..+++.+.++|++++.+..... ...++++....++.+...+.+.++....+.++.+.... T Consensus 13 M-KILVtGatGfIG~~l~~~Ll~~g~~V~~~~r~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~v~~~a~~~ 85 (321) T 2pk3_A 13 M-RALITGVAGFVGKYLANHLTEQNVEVFGTSRNNE--AKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKS 85 (321) T ss_dssp C-EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTT--CCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCC T ss_pred C-EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC--CCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCC T ss_conf 6-7999678888999999999988498999808871--24689769993368999999999857995999831111 No 49 >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Probab=73.36 E-value=4.6 Score=19.37 Aligned_cols=82 Identities=9% Similarity=0.042 Sum_probs=53.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCC---------------C----CCCCC--EEEEEHHHHHHHHH Q ss_conf 973999977980389999999978997899995486673---------------1----03885--67873899999999 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSF---------------D----WQDFE--CRELPLGDFCVLRS 59 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~---------------~----~~~~~--~~~~~ig~ig~li~ 59 (281) +++|+|| |-|..=--+|++++.+|++++.......+.. . ..+.. +...++.++..+++ T Consensus 8 ~r~V~II-GlGlIG~Sla~aL~~~g~~V~g~D~~~~~~~~A~~~g~~~~~~~~~~l~~a~~~~DLIIlavPv~~i~~vl~ 86 (341) T 3ktd_A 8 SRPVCIL-GLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLD 86 (341) T ss_dssp SSCEEEE-CCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHHH T ss_pred CCCEEEE-EECHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCEEEECCCHHHHHHHHH T ss_conf 9818999-749899999999987879899998999999999985998545100568774046868996697366666567 Q ss_pred HHHHCCCCEEEE-ECCCCCCCCHHHH Q ss_conf 998649540677-0242321000111 Q gi|254780768|r 60 ILHQYNIGRIVV-AGAIDRRPNVQDL 84 (281) Q Consensus 60 ~Lk~~~i~~ivm-aG~V~krP~~~~l 84 (281) .++...-+.+++ +|.| |.+..... T Consensus 87 ~l~~~~~~~ivTDVgSv-K~~i~~~~ 111 (341) T 3ktd_A 87 AVHTHAPNNGFTDVVSV-KTAVYDAV 111 (341) T ss_dssp HHHHHCTTCCEEECCSC-SHHHHHHH T ss_pred HHHCCCCCCEEECHHHH-HHHHHHHH T ss_conf 65124664334113455-28999998 No 50 >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomics; HET: ADN; 1.40A {Thermus thermophilus HB8} SCOP: c.2.1.2 Probab=73.05 E-value=4.2 Score=19.68 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=32.0 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 973999977980-3899999999789978999954866 Q gi|254780768|r 1 MKRLLIIAGSGM-LPYYVAKAARLKNDEPVIASVLNEC 37 (281) Q Consensus 1 M~kigIIAG~G~-LP~~ia~~~~~~g~~~~ii~l~~~~ 37 (281) |+|.+||-|.+. +=..+|+.+.+.|++++++....+. T Consensus 1 M~K~alITGas~GIG~a~A~~la~~Ga~V~i~~~~~~~ 38 (242) T 1uay_A 1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 38 (242) T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 99799997898889999999999879999999787335 No 51 >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1} Probab=72.00 E-value=2.4 Score=21.26 Aligned_cols=152 Identities=20% Similarity=0.141 Sum_probs=81.6 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC--C--C---------C---C---CCCCEEEEEHHHHHHHHHHHHH Q ss_conf 39999779803899999999789978999954866--7--3---------1---0---3885678738999999999986 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNEC--S--F---------D---W---QDFECRELPLGDFCVLRSILHQ 63 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~--~--~---------~---~---~~~~~~~~~ig~ig~li~~Lk~ 63 (281) |+.++-=.|..-..-++.+..-|..++ .+..... + . + . -|.....++-..+-..+..+-+ T Consensus 15 ~v~v~G~tg~~g~~~~~~~~~~gt~~v-~gVnP~~gG~~v~G~p~y~SV~d~~~~~~~vDlavi~vPa~~v~~~v~e~~~ 93 (297) T 2yv2_A 15 RVLVQGITGREGSFHAKAMLEYGTKVV-AGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVD 93 (297) T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGHHHHHHHHHH T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEE-EEECCCCCCCEEECEECCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHH T ss_conf 199989988375799999998199679-8877998863782863247088874178886489990473100999999987 Q ss_pred CCCCEEEEEC-CCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHC------------ Q ss_conf 4954067702-423210001110260357899999987510480358999999999769748211222------------ Q gi|254780768|r 64 YNIGRIVVAG-AIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEI------------ 130 (281) Q Consensus 64 ~~i~~ivmaG-~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~------------ 130 (281) ++|+.++... .+. . ... . .+.+.-.+.|+.+++++.+ T Consensus 94 ~Gvk~~viitaGf~--e---------~~~---~----------------~l~~~a~~~g~rliGPNc~G~i~p~~~~~~~ 143 (297) T 2yv2_A 94 AGIRLVVVITEGIP--V---------HDT---M----------------RFVNYARQKGATIIGPNCPGAITPGQAKVGI 143 (297) T ss_dssp TTCSEEEECCCCCC--H---------HHH---H----------------HHHHHHHHHTCEEECSSSCEEEETTTEEEES T ss_pred CCCCEEEEECCCCC--C---------HHH---H----------------HHHHHHHHCCCEEECCCCCCEECCCCCEEEE T ss_conf 79988999679988--0---------537---9----------------9999766319889658865145577545897 Q ss_pred CHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHH--HHHHH Q ss_conf 524203543345546532347889989999997332672259998197488962534217--99999 Q gi|254780768|r 131 VPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGRVVALEGIEGTD--SMLQR 195 (281) Q Consensus 131 l~~ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD--~mi~R 195 (281) +|...+++|.++-.. ..=..+..++..+....+|+|.+|.-|. ++.-|+| .+++. T Consensus 144 ~~~~~~~~G~va~iS------QSG~l~~~i~~~~~~~g~G~s~~vs~Gn----~~~~~v~~~d~l~~ 200 (297) T 2yv2_A 144 MPGHIFKEGGVAVVS------RSGTLTYEISYMLTRQGIGQSTVIGIGG----DPIVGLSFTEALKL 200 (297) T ss_dssp CCGGGCCEEEEEEEE------SCHHHHHHHHHHHHHTTCCEEEEEECCS----SSSCSSCHHHHHHH T ss_pred CCCCCCCCCCEEEEE------EEHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCCCCHHHHHHH T ss_conf 760016898767997------3358999999999984997578995378----75357517799999 No 52 >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} Probab=71.10 E-value=4.6 Score=19.39 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=37.3 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--CCCEEEEEHHHHHHHHHHHHHCCCCE Q ss_conf 99977980389999999978997899995486673103--88567873899999999998649540 Q gi|254780768|r 5 LIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQ--DFECRELPLGDFCVLRSILHQYNIGR 68 (281) Q Consensus 5 gIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~--~~~~~~~~ig~ig~li~~Lk~~~i~~ 68 (281) -+|.|.|.+-..+++.+..+|++++++........... .++...-...+. +.|++.++.+ T Consensus 9 ivIiG~g~~g~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~----~~L~~~~i~~ 70 (141) T 3llv_A 9 YIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDE----SFYRSLDLEG 70 (141) T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCH----HHHHHSCCTT T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCH----HHHHHHHHHC T ss_conf 9998989899999999997799489995719999999845972999346788----8886666723 No 53 >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Probab=71.05 E-value=4.6 Score=19.38 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=27.3 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 9997798038999999997899789999548 Q gi|254780768|r 5 LIIAGSGMLPYYVAKAARLKNDEPVIASVLN 35 (281) Q Consensus 5 gIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~ 35 (281) -||+|.|.+-..+++.+..+|++++++.-.. T Consensus 6 ivI~G~g~~g~~l~~~L~~~~~~v~vId~~~ 36 (153) T 1id1_A 6 FIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153) T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEECCC T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 9998988899999999997799889997886 No 54 >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Probab=70.49 E-value=5.4 Score=18.94 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=38.7 Q ss_pred EEECCCCHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 997798038999999997899--789999548667310388567873899999999998649540677024 Q gi|254780768|r 6 IIAGSGMLPYYVAKAARLKND--EPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGA 74 (281) Q Consensus 6 IIAG~G~LP~~ia~~~~~~g~--~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~ 74 (281) ||-|+|.=-..++.++.+... +++++ .++.-.. .-.....++...+..++++.++++++-++ .|. T Consensus 4 liiG~GgrEha~~~~l~~~~~~~~~~~~--~~N~g~~-~~~~~~~~~~~d~~~i~~~~~~~~id~vi-~g~ 70 (424) T 2yw2_A 4 LVVGNGGREHAIAWKVAQSPLVKELYVA--KGNAGIW-EIAKRVDISPTDVEKLAEFAKNEGVDFTI-VGP 70 (424) T ss_dssp EEEESSHHHHHHHHHHTTCTTCSEEEEE--ECCTTGG-GTSEEECSCTTCHHHHHHHHHHHTCSEEE-ECS T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEE--CCCHHHH-HHCCEEEECCCCHHHHHHHHHHHCCCEEE-ECC T ss_conf 9989589999999999858998889998--8988898-54300862889999999999996999999-898 No 55 >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Probab=70.34 E-value=3.5 Score=20.17 Aligned_cols=140 Identities=17% Similarity=0.136 Sum_probs=79.2 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC-------------CCC-----CCCCEEEEEHHHHHHHHHHHHHC Q ss_conf 399997798038999999997899789999548667-------------310-----38856787389999999999864 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECS-------------FDW-----QDFECRELPLGDFCVLRSILHQY 64 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~-------------~~~-----~~~~~~~~~ig~ig~li~~Lk~~ 64 (281) |+.++-=.|..-...++.+..-|..+ +.+...... .++ .|.....++-...-..++.+-+. T Consensus 9 ~v~v~g~tg~~~~~~~~~~~~~g~~~-v~gVnP~~~G~ev~G~p~y~Sv~dlp~~~~vDlavi~vPa~~v~~~~~e~~~~ 87 (288) T 1oi7_A 9 RVLVQGITGREGQFHTKQMLTYGTKI-VAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHA 87 (288) T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHHHHHT T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCE-EEEECCCCCCEEEECCCCCCCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHC T ss_conf 39998997848889999999809967-99875898860887942347477742577876799961789999999999867 Q ss_pred CCCEEEEEC-CCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHC---C--------- Q ss_conf 954067702-423210001110260357899999987510480358999999999769748211222---5--------- Q gi|254780768|r 65 NIGRIVVAG-AIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEI---V--------- 131 (281) Q Consensus 65 ~i~~ivmaG-~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~---l--------- 131 (281) +++-+++.. .+. + ... ..+.++-.+.|+.+++++-+ . T Consensus 88 Gvk~~vi~s~Gf~------E-----~~~-------------------~~l~~~a~~~g~riiGPNc~Gi~n~~~~~~~~~ 137 (288) T 1oi7_A 88 GIPLIVLITEGIP------T-----LDM-------------------VRAVEEIKALGSRLIGGNCPGIISAEETKIGIM 137 (288) T ss_dssp TCSEEEECCSCCC------H-----HHH-------------------HHHHHHHHHHTCEEEESSSCEEEETTTEEEESS T ss_pred CCCEEEEECCCCC------C-----CCH-------------------HHHHHHHCCCCCEEECCCCCCEECCCCCEEEEC T ss_conf 9988999558987------4-----467-------------------889764125795788788663355764447635 Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCE Q ss_conf 242035433455465323478899899999973326722599981974 Q gi|254780768|r 132 PELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGR 179 (281) Q Consensus 132 ~~ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ 179 (281) +....++|.++-...| =..+..++..+...++|.|..|..|. T Consensus 138 ~~~~~~~G~i~~iSqS------G~~~~~~~~~~~~~g~g~s~~vs~Gn 179 (288) T 1oi7_A 138 PGHVFKRGRVGIISRS------GTLTYEAAAALSQAGLGTTTTVGIGG 179 (288) T ss_dssp CGGGCCEEEEEEEESC------HHHHHHHHHHHHHTTCCEEEEEECCS T ss_pred CCCCCCCCCEEEEEEC------CHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 8656889981169842------13799999999976988699971688 No 56 >2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* Probab=69.49 E-value=5.6 Score=18.80 Aligned_cols=70 Identities=11% Similarity=0.004 Sum_probs=46.9 Q ss_pred EEEEE-ECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 39999-77980389999999978997899995486673103885678738999999999986495406770242 Q gi|254780768|r 3 RLLII-AGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 3 kigII-AG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) |||+. +|-|-|. +.+++++.--..-++.+.+.+...+.+.+..++ ..-.-.+.++|.+++|+-+|+|=.= T Consensus 2 kIgvfDSGiGGls--vl~~l~~~lp~~~~iY~~D~a~~PYG~ks~~~i-~~~~~~~~~~l~~~~~~~IVIACNT 72 (255) T 2jfz_A 2 KIGVFDSGVGGFS--VLKSLLKARLFDEIIYYGDSARVPYGTKDPTTI-KQFGLEALDFFKPHEIELLIVACNT 72 (255) T ss_dssp EEEEEESSSTTHH--HHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHH-HHHHHHHHHHHGGGCCSCEEECCHH T ss_pred EEEEEECCCCHHH--HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEECCCH T ss_conf 8999928976799--999999878999989994478999898999999-9999999999997399989975768 No 57 >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Probab=69.35 E-value=5.7 Score=18.78 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=46.4 Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 97-39999779803899999999789978999954866731038856787389999999999864954067702423 Q gi|254780768|r 1 MK-RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAID 76 (281) Q Consensus 1 M~-kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~ 76 (281) |. ||-|..|+|-+=..+++.+.++|++++++.- .........+.....++... ..+. ...+++.|+.+.... T Consensus 1 m~MkILItGatGfIG~~l~~~L~~~g~~v~~~~r-~~~~~~~~~~~~~~~d~~~~-~~~~--~~~~~d~Vih~Aa~~ 73 (311) T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTR-SIGNKAINDYEYRVSDYTLE-DLIN--QLNDVDAVVHLAATR 73 (311) T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES-CCC-----CCEEEECCCCHH-HHHH--HTTTCSEEEECCCCC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCCCEEEECCHHHH-HHHH--HHCCCCEEEECCCCC T ss_conf 9844999899978999999999978698999968-98865556632797260348-9998--761998999844300 No 58 >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Probab=68.03 E-value=6 Score=18.60 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=85.9 Q ss_pred CCEEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCCC-----CCCC--CE--EEEE---HHHHHHHHHHHHHC--C Q ss_conf 9739999779-803899999999789978999954866731-----0388--56--7873---89999999999864--9 Q gi|254780768|r 1 MKRLLIIAGS-GMLPYYVAKAARLKNDEPVIASVLNECSFD-----WQDF--EC--RELP---LGDFCVLRSILHQY--N 65 (281) Q Consensus 1 M~kigIIAG~-G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~-----~~~~--~~--~~~~---ig~ig~li~~Lk~~--~ 65 (281) |+|++||-|. +-+=+.+++.+-+.|.++++.....+.... .+.+ ++ ...+ -.++.++++...++ . T Consensus 1 MnKvalVTGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 80 (250) T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250) T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC T ss_conf 99899991789789999999999879989999898889999999999854994899994079999999999999997599 Q ss_pred CCEEEEECCCCC---CCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-EEECHHHCCHHHCCC-CCC Q ss_conf 540677024232---100011102603578999999875104803589999999997697-482112225242035-433 Q gi|254780768|r 66 IGRIVVAGAIDR---RPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGV-SVVGAHEIVPELLVQ-VGS 140 (281) Q Consensus 66 i~~ivmaG~V~k---rP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~-~vi~~~~~l~~ll~~-~G~ 140 (281) ++-+|-.=.+.. .+.+.+.-.+ . ..+.+ ...-.|--.+.+.+...+.+++- +++.........-.+ ... T Consensus 81 iDiLVnnAGi~~~~~~~~~~~~~~~--~---~~~~~-~vNl~g~~~~~~~~~~~m~~~~~g~IinisS~~~~~~~~~~~~ 154 (250) T 2cfc_A 81 IDVLVNNAGITGNSEAGVLHTTPVE--Q---FDKVM-AVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSA 154 (250) T ss_dssp CCEEEECCCCCCCTTCCSGGGSCHH--H---HHHHH-HHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHH T ss_pred CCEEEECCCCCCCCCCCCCCCCCHH--H---HHHHH-HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHH T ss_conf 9799989976888888752109999--9---99999-9984999999899899999749974999657665778999789 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC Q ss_conf 4554653234788998999999733267225999819 Q gi|254780768|r 141 LGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIG 177 (281) Q Consensus 141 l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~ 177 (281) | ..+|.- -..+-..++.++++..|-=-+|.-+ T Consensus 155 Y---~asKaa--v~~ltr~lA~El~~~gIrVN~I~PG 186 (250) T 2cfc_A 155 Y---TTSKGA--VLQLTKSVAVDYAGSGIRCNAVCPG 186 (250) T ss_dssp H---HHHHHH--HHHHHHHHHHHHGGGTEEEEEEEEC T ss_pred H---HHHHHH--HHHHHHHHHHHHHHCCEEEEEEEEC T ss_conf 9---999999--9999999999962409599996108 No 59 >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Probab=67.87 E-value=6.1 Score=18.58 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=61.7 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCC-CCEEEE--------EHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 999779803899999999789978999954866-731038-856787--------3899999999998649540677024 Q gi|254780768|r 5 LIIAGSGMLPYYVAKAARLKNDEPVIASVLNEC-SFDWQD-FECREL--------PLGDFCVLRSILHQYNIGRIVVAGA 74 (281) Q Consensus 5 gIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~-~~~~~~-~~~~~~--------~ig~ig~li~~Lk~~~i~~ivmaG~ 74 (281) =|||+.|.....+.++|++.|++.+.+.=.... .+.... .+.+.+ +.-.+..+++..++.+|+-| ..|+ T Consensus 7 ~lianrg~ia~r~~r~~~~~g~~~v~v~s~~d~~~~~~~~ad~~~~~~~~~~~~~~yl~~~~i~~~a~~~~~~ai-~pgy 85 (1150) T 3hbl_A 7 LLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAI-HPGY 85 (1150) T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEE-ECTT T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHCCCCHHHCCEEEECCCCCCHHHCCCCHHHHHHHHHHHCCCEE-ECCC T ss_conf 999897199999999999869939998184784688978878889828988633211599999999999792999-6584 Q ss_pred --CCCCCCHHHHC----CC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHH Q ss_conf --23210001110----26-03578999999875104803589999999997697482112 Q gi|254780768|r 75 --IDRRPNVQDLC----FS-IKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAH 128 (281) Q Consensus 75 --V~krP~~~~l~----~D-~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~ 128 (281) .+-.+.|.... .- +.+.....+ .-||-.-.| +++++.|+-+++.. T Consensus 86 gflsen~~~a~~~~~~gi~~iGp~~~~~~------~~~~K~~~k---~~~~~~gvp~~p~~ 137 (1150) T 3hbl_A 86 GFLSENEQFARRCAEEGIKFIGPHLEHLD------MFGDKVKAR---TTAIKADLPVIPGT 137 (1150) T ss_dssp TTSTTCHHHHHHHHHTTCEESSSCHHHHH------HHHSHHHHH---HHHHHTTCCBCCBC T ss_pred CCCCCCHHHHHHHHHCCCEEECCCHHHHH------HHCCHHHHH---HHHHHCCCCCCCCC T ss_conf 40324999999999879979896999999------835999999---99998699848896 No 60 >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Probab=67.50 E-value=6.2 Score=18.53 Aligned_cols=166 Identities=9% Similarity=0.037 Sum_probs=83.5 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHC--CCCEEEEECCCCC Q ss_conf 973999977980-3899999999789978999954866731038856787389999999999864--9540677024232 Q gi|254780768|r 1 MKRLLIIAGSGM-LPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQY--NIGRIVVAGAIDR 77 (281) Q Consensus 1 M~kigIIAG~G~-LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~--~i~~ivmaG~V~k 77 (281) ++|.+||-|.+. +=..+++.+.+.|.++++.....+.......+.+-.-+..++.++++...++ .++-+|-.-.+.. T Consensus 14 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAG~~~ 93 (247) T 1uzm_A 14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSA 93 (247) T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSCCC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC T ss_conf 99879993888889999999999879989999798211067549996369999999999999997399709998996799 Q ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-EEECHHHCCHHHCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 100011102603578999999875104803589999999997697-4821122252420354334554653234788998 Q gi|254780768|r 78 RPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGV-SVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILA 156 (281) Q Consensus 78 rP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~-~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~dI~~ 156 (281) +..+.+...+ ...+.+ ...-.+--.+.+.+...+.+++. .++-........ ..++... ...+|... ..+ T Consensus 94 ~~~~~~~~~~-----~~~~~~-~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~-~~~~~~~-Y~asKaal--~~l 163 (247) T 1uzm_A 94 DAFLMRMTEE-----KFEKVI-NANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW-GIGNQAN-YAASKAGV--IGM 163 (247) T ss_dssp -----CCCHH-----HHHHHH-HHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------CCHH-HHHHHHHH--HHH T ss_pred CCCHHHCCHH-----HHHHHH-HHHCCCEEHHHHHHHHHHCCCCCCEEEEEECHHHCC-CCCCCHH-HHHHHHHH--HHH T ss_conf 9991459999-----999999-976437100334334553037996899980677707-6778689-99999999--998 Q ss_pred HHHHHHHHCCCCCEEEEEEE Q ss_conf 99999973326722599981 Q gi|254780768|r 157 AMKSAEALSELDVGQSAVSI 176 (281) Q Consensus 157 g~~i~~~l~~~DiGQsvVv~ 176 (281) -..++.++++..|-=-+|.- T Consensus 164 tk~lA~e~~~~gIrVN~I~P 183 (247) T 1uzm_A 164 ARSIARELSKANVTANVVAP 183 (247) T ss_dssp HHHHHHHHGGGTEEEEEEEE T ss_pred HHHHHHHHCCCCCEEEEEEC T ss_conf 99999996405948999953 No 61 >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Probab=67.24 E-value=5.5 Score=18.89 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=28.8 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 39999779803899999999789978999954 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVL 34 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~ 34 (281) |||||-|+|..=..+|+.+.++|+++.+..-. T Consensus 2 kI~iigGaG~iG~alA~~la~~G~~V~l~~R~ 33 (212) T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33 (212) T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 79999484599999999999889989999699 No 62 >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Probab=67.01 E-value=6.3 Score=18.47 Aligned_cols=125 Identities=16% Similarity=0.115 Sum_probs=66.4 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-CEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH Q ss_conf 399997798038999999997899789999548667310388-5678738999999999986495406770242321000 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDF-ECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNV 81 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~-~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~krP~~ 81 (281) |+ |+-|+|-=-..++.++.+...-.-++...++.- .... ++..++..++..++++.++++++-++ +|. + -|.. T Consensus 23 kv-LviGsGgrEhAia~~l~~s~~~~~v~~~pgN~g--~~~~~~~~~i~~~d~~~i~~~~~~~~iD~vv-vGp-E-~pL~ 96 (451) T 2yrx_A 23 NV-LVIGRGGREHAIAWKAAQSPLVGKLYVAPGNPG--IADVAELVHIDELDIEALVQFAKQQAIDLTI-VGP-E-APLA 96 (451) T ss_dssp EE-EEEECSHHHHHHHHHHHTCTTEEEEEEEECCTT--GGGTSEECCCCTTCHHHHHHHHHHTTCSEEE-ECS-H-HHHH T ss_pred EE-EEECCCHHHHHHHHHHHHCCCCCEEEEECCCHH--HHHHCEEEECCCCCHHHHHHHHHHHCCCEEE-ECC-C-HHHH T ss_conf 89-998978899999999974989898999789879--9851704624868999999999983999999-897-5-7888 Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHH----------HCCHHHCCCCCCCCCCCCCHHHH Q ss_conf 11102603578999999875104803589999999997697482112----------22524203543345546532347 Q gi|254780768|r 82 QDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAH----------EIVPELLVQVGSLGTCVPNRDVK 151 (281) Q Consensus 82 ~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~----------~~l~~ll~~~G~l~~~~p~~~~~ 151 (281) .. +++.|+++|+.+++++ .|..+++-..|+-|-. -..- T Consensus 97 ~g-----------------------------l~D~l~~~gi~v~Gp~~~aa~lE~sK~faK~~m~~~~IPta~---~~~~ 144 (451) T 2yrx_A 97 SG-----------------------------IVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTAD---HAAF 144 (451) T ss_dssp TT-----------------------------HHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCC---EEEE T ss_pred HH-----------------------------HHHHHHHCCCCEECCCHHHHHHHHCHHHHHHHHHHCCCCCCC---EEEE T ss_conf 89-----------------------------999995069940077899999875779899999972979878---3899 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 88998999999733 Q gi|254780768|r 152 RDILAAMKSAEALS 165 (281) Q Consensus 152 ~dI~~g~~i~~~l~ 165 (281) .|.+-+.+.++.++ T Consensus 145 ~~~~ea~~~~~~~g 158 (451) T 2yrx_A 145 TSYEEAKAYIEQKG 158 (451) T ss_dssp SCHHHHHHHHHHHC T ss_pred ECHHHHHHHHHHCC T ss_conf 78999999986049 No 63 >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 Probab=66.85 E-value=5.6 Score=18.81 Aligned_cols=117 Identities=22% Similarity=0.185 Sum_probs=56.4 Q ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCC---CCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH Q ss_conf 9977980389999999978997899995486673103---8856787389999999999864954067702423210001 Q gi|254780768|r 6 IIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQ---DFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNVQ 82 (281) Q Consensus 6 IIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~---~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~krP~~~ 82 (281) +|+|.|.+-..+++.+...|++++++.-..+.-..+. +....+-+..+ ...|++.++++.-.+=.....+.. T Consensus 8 iI~G~G~~G~~la~~L~~~g~~v~vId~d~~~~~~~~~~~~~~vi~gd~~~----~~~L~~a~i~~a~~vi~~t~~d~~- 82 (140) T 1lss_A 8 IIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTK----IKTLEDAGIEDADMYIAVTGKEEV- 82 (140) T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTS----HHHHHHTTTTTCSEEEECCSCHHH- T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCEEEECCCCH----HHHHHHCCCCCCCEEEEEECCHHH- T ss_conf 999989999999999997799589985015665544531474599887615----777874591303889995086777- Q ss_pred HHCCCHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCC-EEECHHHCCHHHCC Q ss_conf 1102603578999999875---104803589999999997697-48211222524203 Q gi|254780768|r 83 DLCFSIKDSLRISKMIWQL---VSGGNAAILKASIDLLESYGV-SVVGAHEIVPELLV 136 (281) Q Consensus 83 ~l~~D~~~~~~l~k~l~~~---~~~gDd~iL~~i~~~fe~~G~-~vi~~~~~l~~ll~ 136 (281) ++ .... ..|.+... ..-.|.. -...|++.|+ .++.+.....+.+. T Consensus 83 Ni----~~~~-~ak~~~~~~iia~~~~~~----~~~~l~~~g~d~vi~p~~~~a~~i~ 131 (140) T 1lss_A 83 NL----MSSL-LAKSYGINKTIARISEIE----YKDVFERLGVDVVVSPELIAANYIE 131 (140) T ss_dssp HH----HHHH-HHHHTTCCCEEEECSSTT----HHHHHHHTTCSEEECHHHHHHHHHH T ss_pred HH----HHHH-HHHHCCCCCEEEEECCHH----HHHHHHHCCCCEEECHHHHHHHHHH T ss_conf 89----9999-999829994899985888----8989986799999988999999999 No 64 >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Probab=66.39 E-value=6.5 Score=18.39 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=29.1 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 73999977980389999999978997899995486 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNE 36 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~ 36 (281) +.=-+|+|.|.+-..+++.++..|++++++....+ T Consensus 7 ~~HviI~G~g~~g~~l~~~L~~~~~~vvvId~d~~ 41 (140) T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT 41 (140) T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCH T ss_conf 69999989688999999999978997899988807 No 65 >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} Probab=65.88 E-value=5 Score=19.15 Aligned_cols=74 Identities=8% Similarity=-0.106 Sum_probs=41.4 Q ss_pred CEEEEEECC---CCHHHHHHHHHHHCCCCEEEEEECCCCC--------CCCCCC------CEEEEEHHHHHHHHHHHHHC Q ss_conf 739999779---8038999999997899789999548667--------310388------56787389999999999864 Q gi|254780768|r 2 KRLLIIAGS---GMLPYYVAKAARLKNDEPVIASVLNECS--------FDWQDF------ECRELPLGDFCVLRSILHQY 64 (281) Q Consensus 2 ~kigIIAG~---G~LP~~ia~~~~~~g~~~~ii~l~~~~~--------~~~~~~------~~~~~~ig~ig~li~~Lk~~ 64 (281) +++|+|.-+ +.+...+++.+...|++.+++......+ +.+.+. .....+-..+..+++.+.+. T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~p~~~~~~i~G~~~y~sl~~ip~~vDlvvi~~p~~~v~~~~~~~~~~ 93 (145) T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNSEAAWGVAQEAIAI 93 (145) T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSCSTHHHHHHHHHHHH T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCHHHCCCCCEEEEEECCHHHHHHHHHHHHHC T ss_conf 95999820599998399999999967994488788754432188157524645899864999963732589999999974 Q ss_pred CCCEEEEECCC Q ss_conf 95406770242 Q gi|254780768|r 65 NIGRIVVAGAI 75 (281) Q Consensus 65 ~i~~ivmaG~V 75 (281) +++.+.+-+.. T Consensus 94 g~k~v~~q~g~ 104 (145) T 2duw_A 94 GAKTLWLQLGV 104 (145) T ss_dssp TCCEEECCTTC T ss_pred CCCEEEECCCH T ss_conf 99878732516 No 66 >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Probab=65.61 E-value=6.7 Score=18.29 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=28.3 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 999779803899999999789978999954866 Q gi|254780768|r 5 LIIAGSGMLPYYVAKAARLKNDEPVIASVLNEC 37 (281) Q Consensus 5 gIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~ 37 (281) -||+|.|.+-..+++.++..|++++++....+. T Consensus 7 VII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~ 39 (413) T 3l9w_A 7 VIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDH 39 (413) T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEECCHHH T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH T ss_conf 999898889999999999689988999899999 No 67 >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X- RAY crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Probab=65.55 E-value=6.7 Score=18.28 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=26.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 73999977980389999999978997899995 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASV 33 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l 33 (281) =||||| |.|..=.-+|+.++++|++++.+.. T Consensus 1 MkI~iI-G~G~mG~sla~~L~~~g~~V~~~d~ 31 (279) T 2f1k_A 1 MKIGVV-GLGLIGASLAGDLRRRGHYLIGVSR 31 (279) T ss_dssp CEEEEE-CCSHHHHHHHHHHHHTTCEEEEECS T ss_pred CEEEEE-EECHHHHHHHHHHHHCCCEEEEEEC T ss_conf 989999-0399999999999968897999989 No 68 >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Probab=65.26 E-value=4.9 Score=19.22 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=39.0 Q ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC--CEEEEEHHHHHHHHHHHHHCCCCEE Q ss_conf 997798038999999997899789999548667310388--5678738999999999986495406 Q gi|254780768|r 6 IIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDF--ECRELPLGDFCVLRSILHQYNIGRI 69 (281) Q Consensus 6 IIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~--~~~~~~ig~ig~li~~Lk~~~i~~i 69 (281) +|.|.|.+=..+++.+...|++++++....+.-..+.+. ....-+..+ .+.|++.++.+. T Consensus 10 iIiG~G~~G~~la~~L~~~g~~vvviD~d~~~~~~~~~~g~~~v~gD~td----~~~L~~a~i~~a 71 (144) T 2hmt_A 10 AVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATE----ENELLSLGIRNF 71 (144) T ss_dssp EEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTC----HHHHHTTTGGGC T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEECCCC----HHHHHHCCCCCC T ss_conf 99887899999999999889919999796799999985397499931788----888863022349 No 69 >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Probab=65.08 E-value=6.9 Score=18.22 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=49.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC-CCCCC-CC-CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 9739999779803899999999789978999954-86673-10-38856787389999999999864954067702 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVL-NECSF-DW-QDFECRELPLGDFCVLRSILHQYNIGRIVVAG 73 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~-~~~~~-~~-~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG 73 (281) |++|-|..|.|.+=..+++.+.++|+++.+..+. ..... .+ .+..+....+.....+...++ +++.++.+- T Consensus 4 m~tVlVtGatG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~a 77 (253) T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GIDALVILT 77 (253) T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCSEEEECC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCEEEEEECCCCHHHHHHHC--CCCEEEEEE T ss_conf 99899989977899999999996799279999717877886555885899954244033445642--865589987 No 70 >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 Probab=64.91 E-value=4.3 Score=19.60 Aligned_cols=75 Identities=8% Similarity=-0.045 Sum_probs=46.2 Q ss_pred CCEEEEEECC---CCHHHHHHHHHHHCCCCEEEEEECCCC------CCCCC------CCCEEEEEHHHHHHHHHHHHHCC Q ss_conf 9739999779---803899999999789978999954866------73103------88567873899999999998649 Q gi|254780768|r 1 MKRLLIIAGS---GMLPYYVAKAARLKNDEPVIASVLNEC------SFDWQ------DFECRELPLGDFCVLRSILHQYN 65 (281) Q Consensus 1 M~kigIIAG~---G~LP~~ia~~~~~~g~~~~ii~l~~~~------~~~~~------~~~~~~~~ig~ig~li~~Lk~~~ 65 (281) ++++|+|.-+ |.+...+.+.+...|++++.+.-.... -+.+. +......+=...-.+++.+-+.| T Consensus 14 ~KsIAVVGaS~~~~k~g~~v~~~l~~~g~~V~pVnP~~~~I~G~~~y~sl~dip~~iDlvvi~~p~~~~~~il~e~~~~g 93 (138) T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEAG 93 (138) T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHHTT T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCEECCEECCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCC T ss_conf 47799992169999829999999997899899988998488352544420127875307999817888799999997569 Q ss_pred CCEEEEECCC Q ss_conf 5406770242 Q gi|254780768|r 66 IGRIVVAGAI 75 (281) Q Consensus 66 i~~ivmaG~V 75 (281) ++.+.|-+.. T Consensus 94 ~k~v~~q~G~ 103 (138) T 1y81_A 94 FKKLWFQPGA 103 (138) T ss_dssp CCEEEECTTS T ss_pred CCEEEEECCH T ss_conf 9978960764 No 71 >2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1 Probab=64.85 E-value=3.7 Score=20.02 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=49.5 Q ss_pred CCEEEEEECCCCH-------HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 9739999779803-------899999999789978999954866731038856787389999999999864954067702 Q gi|254780768|r 1 MKRLLIIAGSGML-------PYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAG 73 (281) Q Consensus 1 M~kigIIAG~G~L-------P~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG 73 (281) |+|+.+|.-++-+ ...+|.++...|.++.++...+....-.++..........+.+.++.|...++.++..++ T Consensus 1 Mkk~~ii~~~~P~~~~~~~~al~~Ala~~~~~~~V~vff~~dGV~~l~~~~~p~~~~~~~l~~~~~~l~~~~~~~l~vc~ 80 (119) T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGVFQLLPGQKPDAVLARDYIATFKLLGLYDIEQCWVCA 80 (119) T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGGGGGGGCTTCCGGGGTCCCCGGGGHHHHHTTCCCEEEEH T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEH T ss_conf 96699996789998778999999999998379967999924099987146886445577889999999865996587528 Q ss_pred C Q ss_conf 4 Q gi|254780768|r 74 A 74 (281) Q Consensus 74 ~ 74 (281) . T Consensus 81 ~ 81 (119) T 2d1p_B 81 A 81 (119) T ss_dssp H T ss_pred H T ss_conf 7 No 72 >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii DSM2661} Probab=64.58 E-value=4.2 Score=19.68 Aligned_cols=196 Identities=16% Similarity=0.089 Sum_probs=100.0 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC--C--C---------CC-----CCCCEEEEEHHHHHHHHHHHHHC Q ss_conf 39999779803899999999789978999954866--7--3---------10-----38856787389999999999864 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNEC--S--F---------DW-----QDFECRELPLGDFCVLRSILHQY 64 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~--~--~---------~~-----~~~~~~~~~ig~ig~li~~Lk~~ 64 (281) |+.+..=.|..-...++.+.+-|.+++. +..... . . +. .+.....++=...-..+...-+. T Consensus 15 ~v~vqGitg~~g~~~~~~~~~~gt~iv~-gVnP~~gG~ev~G~p~y~sV~e~p~~~~~D~avI~vPa~~v~~a~~ea~~~ 93 (294) T 2yv1_A 15 KAIVQGITGRQGSFHTKKMLECGTKIVG-GVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAIDA 93 (294) T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCCEEE-EECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHT T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEE-EECCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHC T ss_conf 6999899882889999999982996799-878898850784821557488763377874899966816789999999976 Q ss_pred CCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHC------------CH Q ss_conf 954067702423210001110260357899999987510480358999999999769748211222------------52 Q gi|254780768|r 65 NIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEI------------VP 132 (281) Q Consensus 65 ~i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~------------l~ 132 (281) +|+.++....-- |- .. -..+.++-++.|.++++++.+ .+ T Consensus 94 Gvk~~viit~g~--~~--------~~-------------------~~~l~~~a~~~g~rliGPNc~Gii~p~~~~~~~~~ 144 (294) T 2yv1_A 94 GIELIVVITEHI--PV--------HD-------------------TMEFVNYAEDVGVKIIGPNTPGIASPKVGKLGIIP 144 (294) T ss_dssp TCSEEEECCSCC--CH--------HH-------------------HHHHHHHHHHHTCEEECSSCCEEEETTTEEEECCC T ss_pred CCCEEEEEECEE--CH--------HH-------------------HHHHHHHHHCCCCEEECCCCCEEECHHHCCCCCCC T ss_conf 996899970216--43--------11-------------------36788887606979998997755764443153254 Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHH--HHHHHHHHHHHHCCCCCCCC Q ss_conf 4203543345546532347889989999997332672259998197488962534217--99999997543123456677 Q gi|254780768|r 133 ELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGRVVALEGIEGTD--SMLQRIVDCRNNGRILAGKS 210 (281) Q Consensus 133 ~ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD--~mi~R~~~~~~~~~~~~~~~ 210 (281) ....++|.++-..-| =..+..++..+.+..+|||.+|.-|. ++.-|++ .+++...+- +.-. T Consensus 145 ~~~~~~G~igiiSqS------G~l~~~i~~~~~~~G~G~S~~vs~Gn----~~~~d~~~~d~l~~~~~D-------p~T~ 207 (294) T 2yv1_A 145 MEVLKEGSVGMVSRS------GTLTYEIAHQIKKAGFGVSTCVGIGG----DPIVGLRYKEVLDLFEKD-------DETE 207 (294) T ss_dssp GGGCCEEEEEEEESC------SHHHHHHHHHHHHTTCCEEEEEECCS----SSSCSSCHHHHHHHHHTC-------TTCS T ss_pred CCCCCCCCEEEEEEC------CHHHHHHHHHHHHCCCCEEEEEECCC----CCCCCCCHHHHHHHHCCC-------CCCC T ss_conf 001578876899813------64999999999983998899994488----732343499999975249-------9862 Q ss_pred EEEEEECCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCE Q ss_conf 1899934888753121066279999999984990999973977 Q gi|254780768|r 211 GVLVKMCKSQQDMRADLPSIGAKTVQNVIKAGLAGIALEAGKS 253 (281) Q Consensus 211 ~ilvK~~K~~QD~r~DlP~IG~~Ti~~~~~ag~~giaiea~~~ 253 (281) .|++=.- ...+.+.. ..+.+.+.+--.+++.+|++ T Consensus 208 ~I~ly~E-~~g~~~~~-------~~~~~~~~~KPVV~~k~Grs 242 (294) T 2yv1_A 208 AIVMIGE-IGGGAEEE-------AAKFIEKMKKPVIGYIAGQS 242 (294) T ss_dssp EEEEEEE-SSSSHHHH-------HHHHHTTCSSCEEEEEECC- T ss_pred EEEEEEE-ECCCCCHH-------HHHHHHHCCCCEEEEEEECC T ss_conf 8999999-66865089-------99999864995799982055 No 73 >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Probab=63.15 E-value=7.4 Score=17.99 Aligned_cols=165 Identities=10% Similarity=0.060 Sum_probs=86.3 Q ss_pred CCEEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCC----CCCC--CCEE--EEE---HHHHHHHHHHHHHC--CC Q ss_conf 9739999779-80389999999978997899995486673----1038--8567--873---89999999999864--95 Q gi|254780768|r 1 MKRLLIIAGS-GMLPYYVAKAARLKNDEPVIASVLNECSF----DWQD--FECR--ELP---LGDFCVLRSILHQY--NI 66 (281) Q Consensus 1 M~kigIIAG~-G~LP~~ia~~~~~~g~~~~ii~l~~~~~~----~~~~--~~~~--~~~---ig~ig~li~~Lk~~--~i 66 (281) |+|++||-|. +-+=..+|+.+-++|.+++++....+.-. ++.. ..+. ..+ -.++.++++...++ .+ T Consensus 1 MkKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i 80 (256) T 1geg_A 1 MKKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256) T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC T ss_conf 99899991665589999999999879989999798999999999999639929999942899999999999999975999 Q ss_pred CEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CEEECHHHCCHHHCCCCCCCCCC Q ss_conf 4067702423210001110260357899999987510480358999999999769--74821122252420354334554 Q gi|254780768|r 67 GRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYG--VSVVGAHEIVPELLVQVGSLGTC 144 (281) Q Consensus 67 ~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G--~~vi~~~~~l~~ll~~~G~l~~~ 144 (281) +-+|-.-.+.++-.+.++-.+ ...+.+ ...-.|--.+.+.++..+.+++ =.|+......... ..++. +.. T Consensus 81 DiLVnnAG~~~~~~~~~~~~~-----~~~~~~-~vNl~g~~~~~~~~~p~m~~~~~~g~Iv~isS~~~~~-~~~~~-~~Y 152 (256) T 1geg_A 81 DVIVNNAGVAPSTPIESITPE-----IVDKVY-NINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV-GNPEL-AVY 152 (256) T ss_dssp CEEEECCCCCCCBCGGGCCHH-----HHHHHH-HHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-CCTTB-HHH T ss_pred CEEEECCCCCCCCCHHHCCHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCC-CCCCC-HHH T ss_conf 799989988999990459999-----999999-9981999999999877755507996499973555467-89997-689 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 6532347889989999997332672259998 Q gi|254780768|r 145 VPNRDVKRDILAAMKSAEALSELDVGQSAVS 175 (281) Q Consensus 145 ~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv 175 (281) ..+|. .=..+-..++.++++..|-=-+|. T Consensus 153 ~asKa--al~~ltk~lA~el~~~gIrVN~I~ 181 (256) T 1geg_A 153 SSSKF--AVRGLTQTAARDLAPLGITVNGYC 181 (256) T ss_dssp HHHHH--HHHHHHHHHHHHHGGGTEEEEEEE T ss_pred HHHHH--HHHHHHHHHHHHHHHHCEEEEEEE T ss_conf 99999--999999999998602290999996 No 74 >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Probab=63.04 E-value=7.5 Score=17.98 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=52.7 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEE-ECCCCCC--------CCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 7399997798038999999997899789999-5486673--------103885678738999999999986495406770 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIAS-VLNECSF--------DWQDFECRELPLGDFCVLRSILHQYNIGRIVVA 72 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~-l~~~~~~--------~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivma 72 (281) |+|=|..|+|-+=..+++.+.++|++++++. +...... ...++.+...++.....+-+.++..+++.|+-+ T Consensus 12 K~ILITGatGFIGs~Lv~~Ll~~g~~V~~iD~l~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~~~~D~ViHl 91 (699) T 1z45_A 12 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF 91 (699) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEC T ss_conf 98999589848999999999978696999988887735556555653237876999657899999999977799999989 Q ss_pred CCCC Q ss_conf 2423 Q gi|254780768|r 73 GAID 76 (281) Q Consensus 73 G~V~ 76 (281) ..+. T Consensus 92 AA~s 95 (699) T 1z45_A 92 AGLK 95 (699) T ss_dssp CSCC T ss_pred CCCC T ss_conf 7778 No 75 >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural genomics, PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} Probab=62.54 E-value=7.6 Score=17.92 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=27.4 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 973999977980389999999978997899995 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASV 33 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l 33 (281) |+ =+|+|.|.+-..+|+.+...|++++++.- T Consensus 1 m~--iiI~G~g~~g~~la~~L~~~g~~vvvid~ 31 (218) T 3l4b_C 1 MK--VIIIGGETTAYYLARSMLSRKYGVVIINK 31 (218) T ss_dssp CC--EEEECCHHHHHHHHHHHHHTTCCEEEEES T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCEEEEEC T ss_conf 98--99999889999999999978998999999 No 76 >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Probab=61.97 E-value=7.8 Score=17.85 Aligned_cols=166 Identities=8% Similarity=-0.006 Sum_probs=84.1 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCCCCC------CCCC--CCEEE--E---EHHHHHHHHHHHHHC-- Q ss_conf 973999977980-389999999978997899995486673------1038--85678--7---389999999999864-- Q gi|254780768|r 1 MKRLLIIAGSGM-LPYYVAKAARLKNDEPVIASVLNECSF------DWQD--FECRE--L---PLGDFCVLRSILHQY-- 64 (281) Q Consensus 1 M~kigIIAG~G~-LP~~ia~~~~~~g~~~~ii~l~~~~~~------~~~~--~~~~~--~---~ig~ig~li~~Lk~~-- 64 (281) |+|++||-|.+. +=..+|+.+-++|.++++......... ..+. ..+.. . +-.++.++++...++ T Consensus 1 M~KvalVTGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 80 (258) T 3a28_C 1 MSKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG 80 (258) T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC T ss_conf 99899990788689999999999879989999589887899999999985699489999027999999999999999829 Q ss_pred CCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CEEECHHHCCHHHCCCCCCCC Q ss_conf 954067702423210001110260357899999987510480358999999999769--748211222524203543345 Q gi|254780768|r 65 NIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYG--VSVVGAHEIVPELLVQVGSLG 142 (281) Q Consensus 65 ~i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G--~~vi~~~~~l~~ll~~~G~l~ 142 (281) .++-+|-.-.+...-.+.++-.+ ...+.+ ...-.+--.+.+.+...+.+.+ =.++-........ ..++. + T Consensus 81 ~iDiLVnnAG~~~~~~~~~~~~~-----~~~~~~-~vNl~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~-~~~~~-~ 152 (258) T 3a28_C 81 GFDVLVNNAGIAQIKPLLEVTEE-----DLKQIY-SVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ-GFPIL-S 152 (258) T ss_dssp CCCEEEECCCCCCCCCGGGCCHH-----HHHHHH-HHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS-CCTTC-H T ss_pred CCCEEEECCCCCCCCCCCCCCHH-----HHHHHH-HHHHHHHHHHCCCCCHHHHCCCCCCCEEEEEEHHHCC-CCCCC-H T ss_conf 98399989988999875659999-----999999-8621223111011443443047887406884032246-88641-5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 5465323478899899999973326722599981 Q gi|254780768|r 143 TCVPNRDVKRDILAAMKSAEALSELDVGQSAVSI 176 (281) Q Consensus 143 ~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~ 176 (281) ....+|.. =..+...++.++++..|-=.+|.- T Consensus 153 ~Y~asKaa--l~~lt~~lA~el~~~gIrVN~I~P 184 (258) T 3a28_C 153 AYSTTKFA--VRGLTQAAAQELAPKGHTVNAYAP 184 (258) T ss_dssp HHHHHHHH--HHHHHHHHHHHHGGGTCEEEEEEE T ss_pred HHHHHHHH--HHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 88999999--999999999995621837999963 No 77 >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Probab=61.38 E-value=8 Score=17.79 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=40.5 Q ss_pred EEEECCCCHHH-----------HHHHHHHHCCCCEEEEEECCCC---CCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEE Q ss_conf 99977980389-----------9999999789978999954866---73103885678738999999999986495406 Q gi|254780768|r 5 LIIAGSGMLPY-----------YVAKAARLKNDEPVIASVLNEC---SFDWQDFECRELPLGDFCVLRSILHQYNIGRI 69 (281) Q Consensus 5 gIIAG~G~LP~-----------~ia~~~~~~g~~~~ii~l~~~~---~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~i 69 (281) -||+|+|..-. ++.++|++.|++++.+.-+..+ +.+..+ ..++-++ ....+.+++++++++-| T Consensus 10 VLIiGsG~i~IGqa~EfDys~~qai~alke~Gi~tVlVnsNpati~td~~~AD-~vYiePl-t~e~i~~Ii~~e~pDaI 86 (1073) T 1a9x_A 10 ILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMAD-ATYIEPI-HWEVVRKIIEKERPDAV 86 (1073) T ss_dssp EEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSS-EEECSCC-CHHHHHHHHHHHCCSEE T ss_pred EEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCC-EEEECCC-CHHHHHHHHHHHCCCEE T ss_conf 99988880231301013778999999999879989998588446248844150-6798789-99999999998589999 No 78 >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Probab=61.19 E-value=8 Score=17.76 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=74.7 Q ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-CCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHH Q ss_conf 99779803899999999789978999954866731038-85678738999999999986495406770242321000111 Q gi|254780768|r 6 IIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQD-FECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNVQDL 84 (281) Q Consensus 6 IIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~-~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~krP~~~~l 84 (281) |+-|+|-==..++..+.+...-.-+....++.- ... .++..+++.++..++++.++++++=+| +|. + -|... T Consensus 25 LviGsGgREhAi~~~l~~s~~~~~v~~~pgN~g--~~~~~~~~~i~~~d~~~l~~~~~~~~iDlvv-vGp-E-~pL~~-- 97 (442) T 3lp8_A 25 LVIGSGGREHSMLHHIRKSTLLNKLFIAPGREG--MSGLADIIDIDINSTIEVIQVCKKEKIELVV-IGP-E-TPLMN-- 97 (442) T ss_dssp EEEECSHHHHHHHHHHTTCTTEEEEEEEECCGG--GTTTSEECCCCTTCHHHHHHHHHHTTCCEEE-ECS-H-HHHHT-- T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCHH--HHHCCCEEEECCCCHHHHHHHHHHCCCCEEE-ECC-C-HHHHH-- T ss_conf 998988899999999975989898999799678--8741821662778999999999982999999-898-3-89887-- Q ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHH----------HCCHHHCCCCCCCCCCCCCHHHHHHH Q ss_conf 02603578999999875104803589999999997697482112----------22524203543345546532347889 Q gi|254780768|r 85 CFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAH----------EIVPELLVQVGSLGTCVPNRDVKRDI 154 (281) Q Consensus 85 ~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~----------~~l~~ll~~~G~l~~~~p~~~~~~dI 154 (281) .+++.|+++|+.+++++ .|..+++...|+-|... ..-.|. T Consensus 98 ---------------------------Gi~D~l~~~gi~vfGps~~~A~lE~sK~f~k~~m~~~~IPta~~---~~~~~~ 147 (442) T 3lp8_A 98 ---------------------------GLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKY---GYFVDT 147 (442) T ss_dssp ---------------------------THHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCE---EEESSH T ss_pred ---------------------------HHHHHHHHCCCCEEECCHHHHHHHHCHHHHHHHHHHHCCCCCCH---HHCCCH T ss_conf ---------------------------88999974899478647889887536899999999868887510---013889 Q ss_pred HHHHHHHHHHCCCCCEEEEEEEC Q ss_conf 98999999733267225999819 Q gi|254780768|r 155 LAAMKSAEALSELDVGQSAVSIG 177 (281) Q Consensus 155 ~~g~~i~~~l~~~DiGQsvVv~~ 177 (281) +-+.+.++..+ .-+||+- T Consensus 148 ~ea~~~~~~~~-----~P~VIK~ 165 (442) T 3lp8_A 148 NSAYKFIDKHK-----LPLVVKA 165 (442) T ss_dssp HHHHHHHHHSC-----SSEEEEE T ss_pred HHHHHHHHHCC-----CCEEEEC T ss_conf 99999986079-----9789974 No 79 >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Probab=60.30 E-value=8.2 Score=17.71 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=28.9 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 97399997798038999999997899789999548 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLN 35 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~ 35 (281) |+ +.|+.|+|.+=..+++.+..+|++++.+.-.. T Consensus 1 Mk-VlVtGatG~iG~~lv~~Ll~~g~~V~~~~R~~ 34 (219) T 3dqp_A 1 MK-IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV 34 (219) T ss_dssp CE-EEEESTTSHHHHHHHHHHTTSSCEEEEEESSG T ss_pred CE-EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 93-99999999899999999997839899998887 No 80 >2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} Probab=59.56 E-value=8.6 Score=17.58 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=68.0 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-CCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCC Q ss_conf 9739999779803899999999789978999954866731038-856787389999999999864954067702423210 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQD-FECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRP 79 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~-~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~krP 79 (281) |..=-|+-|+|-==..++..+.+-..-.-++...++....... .....++...+..+.++.++++++-++ +|. + -| T Consensus 23 ~~~KILviGsGgREhAia~~l~~s~~~~~v~~~pgN~g~~~~~~~~~~~i~~~d~~~i~~~~~~~~iDlvi-vGp-E-~p 99 (452) T 2qk4_A 23 MAARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISNTAISISDHTALAQFCKEKKIEFVV-VGP-E-AP 99 (452) T ss_dssp CSEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGSBSSSEEECCCCSSCHHHHHHHHHHHTCCEEE-ECS-S-HH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEE-ECC-C-HH T ss_conf 68779999978899999999985989888999789879850043123465867999999999985999999-897-3-89 Q ss_pred CHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHH----------HCCHHHCCCCCCCCCCCCCHH Q ss_conf 0011102603578999999875104803589999999997697482112----------225242035433455465323 Q gi|254780768|r 80 NVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAH----------EIVPELLVQVGSLGTCVPNRD 149 (281) Q Consensus 80 ~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~----------~~l~~ll~~~G~l~~~~p~~~ 149 (281) ... .+++.|+++|+.+++++ .|..+++-..|+-|.. -. T Consensus 100 L~~-----------------------------Gl~D~l~~~gi~vfGps~~aa~lE~sK~f~k~~m~~~~Ipta~---~~ 147 (452) T 2qk4_A 100 LAA-----------------------------GIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQ---WK 147 (452) T ss_dssp HHT-----------------------------THHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCC---EE T ss_pred HHH-----------------------------HHHHHHHHCCCCEECCHHHHHHHHHCHHHHHHHHHHCCCCCCH---HE T ss_conf 898-----------------------------8999998679944355088888774799999999851799970---23 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 4788998999999733 Q gi|254780768|r 150 VKRDILAAMKSAEALS 165 (281) Q Consensus 150 ~~~dI~~g~~i~~~l~ 165 (281) .-.|.+-+.+.++.++ T Consensus 148 ~~~~~~ea~~~i~~~~ 163 (452) T 2qk4_A 148 AFTKPEEACSFILSAD 163 (452) T ss_dssp EESSHHHHHHHHHHCS T ss_pred EEECHHHHHHHHHHCC T ss_conf 9946899999998669 No 81 >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide complex; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Probab=58.90 E-value=8.8 Score=17.50 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=49.8 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE-CCCCC---CCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 973999977980389999999978997899995-48667---3103885678738999999999986495406770242 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASV-LNECS---FDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l-~~~~~---~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) | |+-|..|.|-+=..+++.+..+|++++++.- ..... ....+.++...++.+...+.+.++......++.+... T Consensus 21 M-kILVTGgtGfiG~~lv~~Ll~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~~~v~~~~~~ 98 (330) T 2pzm_A 21 M-RILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAA 98 (330) T ss_dssp C-EEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC T ss_pred C-EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHH T ss_conf 7-69998987789999999999786989999788877775603135966998334686886788861451367776530 No 82 >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Probab=58.08 E-value=9.1 Score=17.41 Aligned_cols=76 Identities=16% Similarity=0.087 Sum_probs=52.3 Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC--------CCCCCEEEEEHHHHHHHHHHHHHCCCCEEEE Q ss_conf 973-9999779803899999999789978999954866731--------0388567873899999999998649540677 Q gi|254780768|r 1 MKR-LLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFD--------WQDFECRELPLGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 1 M~k-igIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~--------~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivm 71 (281) |+| +=|..|+|-+=..+++.+.++|++++.+......+.. .+++.+...++.+...+...+....+..++. T Consensus 13 M~k~vLITGatGfIGs~l~~~Ll~~g~~V~~i~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~ 92 (335) T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN 92 (335) T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCC T ss_conf 67549997588789999999999784989999899976517779873336894899821567232100022333222222 Q ss_pred ECCCC Q ss_conf 02423 Q gi|254780768|r 72 AGAID 76 (281) Q Consensus 72 aG~V~ 76 (281) +.... T Consensus 93 ~a~~~ 97 (335) T 1rpn_A 93 LAAQS 97 (335) T ss_dssp CCSCC T ss_pred CCCCC T ss_conf 22222 No 83 >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Probab=58.02 E-value=9.1 Score=17.40 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.6 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 97399997798038999999997899789999 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIAS 32 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~ 32 (281) |+ |.|+.|+|.+=..+++.+.++|++++.+. T Consensus 1 Mk-IlV~GatG~iG~~lv~~L~~~G~~V~~~~ 31 (224) T 3h2s_A 1 MK-IAVLGATGRAGSAIVAEARRRGHEVLAVV 31 (224) T ss_dssp CE-EEEETTTSHHHHHHHHHHHHTTCEEEEEE T ss_pred CE-EEEECCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 96-99999895899999999997879899998 No 84 >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus aureus subsp} Probab=58.00 E-value=9.1 Score=17.40 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=45.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC-CCCC--CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9739999779803899999999789978999954866-7310--3885678738999999999986495406770242 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNEC-SFDW--QDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~-~~~~--~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) |+ |.|..|.|.+-..+++.+.++|...+.+..++.. ...+ ...+....++.+...+.+.|+ +|+.|+.+-.. T Consensus 1 Mk-IlVtGatG~iG~~l~~~Ll~~g~~~v~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~al~--g~d~V~~~~~~ 75 (289) T 3e48_A 1 MN-IMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFK--GMDTVVFIPSI 75 (289) T ss_dssp CC-EEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTT--TCSEEEECCCC T ss_pred CE-EEEECCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCHHHHCCCCEEEEEECCCHHHHHHHHC--CCCEEEEECCC T ss_conf 94-99989887899999999996899879999789466613414997799973678676555433--89889995178 No 85 >3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} Probab=57.58 E-value=5.9 Score=18.68 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=39.6 Q ss_pred CCEEEEEECC---CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCC---------CCC--EEEEEHHHHHHHHHHHHHCCC Q ss_conf 9739999779---80389999999978997899995486673103---------885--678738999999999986495 Q gi|254780768|r 1 MKRLLIIAGS---GMLPYYVAKAARLKNDEPVIASVLNECSFDWQ---------DFE--CRELPLGDFCVLRSILHQYNI 66 (281) Q Consensus 1 M~kigIIAG~---G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~---------~~~--~~~~~ig~ig~li~~Lk~~~i 66 (281) |+++++|.-+ +.+...+.+.++..|++++.+.-+...-...+ ..+ ...++=...-.+++.+.+.++ T Consensus 4 ~K~iaVvGaS~~~~k~g~~v~~~L~~~G~~V~pVnP~~~~I~G~~~~~sl~~p~~iD~v~i~~p~~~~~~~v~e~~~~g~ 83 (122) T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEYNYILSLKP 83 (122) T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGHHHHHHHCC T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHCCC T ss_conf 66499996669999829999999997899899988877610005899745567887579999588998999999985399 Q ss_pred CEEEE Q ss_conf 40677 Q gi|254780768|r 67 GRIVV 71 (281) Q Consensus 67 ~~ivm 71 (281) +.+.| T Consensus 84 k~vw~ 88 (122) T 3ff4_A 84 KRVIF 88 (122) T ss_dssp SEEEE T ss_pred CEEEE T ss_conf 99999 No 86 >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Probab=57.13 E-value=9.4 Score=17.31 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=28.5 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 3999977980389999999978997899995486 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNE 36 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~ 36 (281) |||+| |.|..=.-+|+.+.++|+++++..-..+ T Consensus 30 KIgiI-G~G~MG~~lA~~L~~aG~~V~v~dR~~~ 62 (215) T 2vns_A 30 KVGIL-GSGDFARSLATRLVGSGFKVVVGSRNPK 62 (215) T ss_dssp CEEEE-CCSHHHHHHHHHHHHTTCCEEEEESSHH T ss_pred CEEEE-CCCHHHHHHHHHHHHCCCEEEEECCCHH T ss_conf 39998-5249999999999987997899689888 No 87 >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima} Probab=57.01 E-value=9.4 Score=17.29 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=42.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCE Q ss_conf 97399997798038999999997899789999548667310388567873899999999998649540 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGR 68 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ 68 (281) | |||+|+=.|++-- ++++++..|.++.++.- ..++.+++...++=|.++...+.|++.+..+ T Consensus 21 m-kIgVi~~~Gn~~s-~~~aL~~lG~~~~iv~~----~~~l~~~D~lILPGG~~~~~~~~l~~~~~~~ 82 (208) T 2iss_D 21 M-KIGVLGVQGDVRE-HVEALHKLGVETLIVKL----PEQLDMVDGLILPGGESTTMIRILKEMDMDE 82 (208) T ss_dssp C-EEEEECSSSCHHH-HHHHHHHTTCEEEEECS----GGGGGGCSEEEECSSCHHHHHHHHHHTTCHH T ss_pred C-EEEEEECCCCHHH-HHHHHHHCCCCEEEECC----HHHHHCCCEEEECCCCHHHHHHHHHHCCCHH T ss_conf 7-8999956887999-99999988998999899----8998259999999999899999999869889 No 88 >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoid, oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Probab=56.99 E-value=9.4 Score=17.29 Aligned_cols=71 Identities=18% Similarity=0.131 Sum_probs=48.5 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCC---------CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 7399997798038999999997899789999548667310---------3885678738999999999986495406770 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDW---------QDFECRELPLGDFCVLRSILHQYNIGRIVVA 72 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~---------~~~~~~~~~ig~ig~li~~Lk~~~i~~ivma 72 (281) +||.|+.|.|.+=..+++++.++|+++.++.-....++.. ........++.....+...++...+.-++-+ T Consensus 11 ~KVlV~GaTG~iG~~lv~~Ll~~g~~V~vl~R~~~~~~~k~~~~~~l~~~gv~~v~gD~~d~~~l~~a~~g~~~~~vi~~ 90 (346) T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVST 90 (346) T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEEC T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCEEEEC T ss_conf 91999898968999999999968994899989998775578999887508938999305551039999621553237833 No 89 >2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* Probab=56.85 E-value=9.5 Score=17.28 Aligned_cols=152 Identities=13% Similarity=0.077 Sum_probs=74.6 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEE-EHHHHHHHHHHHHHCCCCEEEEECCCCCCC Q ss_conf 9739999779803899999999789978999954866731038856787-389999999999864954067702423210 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECREL-PLGDFCVLRSILHQYNIGRIVVAGAIDRRP 79 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~-~ig~ig~li~~Lk~~~i~~ivmaG~V~krP 79 (281) |+|||+| |-|..=.-+|+.+.++|+++++.......-..+.+....+. +..+ + .+ +|+-|+.+ +.-.+ T Consensus 3 m~kIg~I-GlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e---~---~~--~~dvvi~~--l~~~~ 71 (302) T 2h78_A 3 MKQIAFI-GLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARD---A---VQ--GADVVISM--LPASQ 71 (302) T ss_dssp CCEEEEE-CCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHH---H---HT--TCSEEEEC--CSCHH T ss_pred CCEEEEE-EEHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEECCCHHH---H---HH--CCCCCCCC--CCCHH T ss_conf 4889998-2548899999999978997899849999999999869978389999---9---85--67861103--89477 Q ss_pred CHHHHCCCHHHHHH-H--HHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 00111026035789-9--99998751048035899999999976974821122252420354334554653234788998 Q gi|254780768|r 80 NVQDLCFSIKDSLR-I--SKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILA 156 (281) Q Consensus 80 ~~~~l~~D~~~~~~-l--~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~dI~~ 156 (281) ...+......+... + -+++.. ....+-..-+.+.+.+++.|...+++--.-...-+..|.++---- -+....+. T Consensus 72 ~~~~V~~~~~g~~~~~~~g~iiid-~sT~~p~~~~~~~~~~~~~g~~~vdapvsGg~~~a~~g~l~~~~g--G~~~~~~~ 148 (302) T 2h78_A 72 HVEGLYLDDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVG--GDAEALEK 148 (302) T ss_dssp HHHHHHHSSSCGGGSSCSSCEEEE-CSCCCHHHHHHHHHHHHHTTCCEEECCEESCHHHHHHTCEEEEEE--SCHHHHHH T ss_pred HHHHHHHCCCCHHHCCCCCCEEEE-CCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHCCCEEEEEC--CCHHHHHH T ss_conf 799997163005325899978998-888998999999999997699289258879977875298799983--78999999 Q ss_pred HHHHHHHHCC Q ss_conf 9999997332 Q gi|254780768|r 157 AMKSAEALSE 166 (281) Q Consensus 157 g~~i~~~l~~ 166 (281) ...+++.+++ T Consensus 149 ~~~vL~~~~~ 158 (302) T 2h78_A 149 ARPLFEAMGR 158 (302) T ss_dssp HHHHHHHHEE T ss_pred HHHHHHHHCC T ss_conf 9999998479 No 90 >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P)binding protein, rossmann fold; HET: NAP; 2.15A {Streptococcus pyogenes m1 gas} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Probab=56.47 E-value=8.9 Score=17.47 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=26.1 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 973999977980389999999978997899995 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASV 33 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l 33 (281) | |||+| |.|++-..+++.+...++++++... T Consensus 4 M-kIg~I-G~G~mg~ai~~gl~~~~~~i~v~~r 34 (259) T 2ahr_A 4 M-KIGII-GVGKMASAIIKGLKQTPHELIISGS 34 (259) T ss_dssp C-EEEEE-CCSHHHHHHHHHHTTSSCEEEEECS T ss_pred C-EEEEE-CCCHHHHHHHHHHHHCCCEEEEECC T ss_conf 8-89998-8849999999999849984999789 No 91 >1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A* Probab=55.10 E-value=10 Score=17.09 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=87.7 Q ss_pred HHHHHHHHHHHHCCCEEECHHHCCHHHCCC----CCCCCCCCCCHHH--HHHHHHHHHHHHHHCCCCCEEEEEEECCEEE Q ss_conf 589999999997697482112225242035----4334554653234--7889989999997332672259998197488 Q gi|254780768|r 108 AILKASIDLLESYGVSVVGAHEIVPELLVQ----VGSLGTCVPNRDV--KRDILAAMKSAEALSELDVGQSAVSIGGRVV 181 (281) Q Consensus 108 ~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~----~G~l~~~~p~~~~--~~dI~~g~~i~~~l~~~DiGQsvVv~~g~Vi 181 (281) .++..+.+.+++.|+++...+ ++++.. .|-+|.+.|+-.. ...+..++.++..+|. ..+|+-.|+- T Consensus 69 ~~~~~~k~~l~~~Gl~~~~~t---~nlf~~p~f~~Ga~TnPD~~vR~~Ai~~~k~aIDiaa~LGa----~~~v~W~G~d- 140 (393) T 1xim_A 69 GIIAGFKKALDETGLIVPMVT---TNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGA----KTLVLWGGRE- 140 (393) T ss_dssp HHHHHHHHHHHHHTCBCCEEE---CCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CEEEEECTTS- T ss_pred HHHHHHHHHHHHCCCEEEECC---CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC----CEEEECCCCC- T ss_conf 999999999996398410205---64356812016887896999999999999999999999689----9699837988- Q ss_pred EEECCCCHH--HHHHH-------HHHHHHHCCCCCCCCEEEEEECCCCCCC-EEEECCCCHHHHHHHHHCCCE---EEEE Q ss_conf 962534217--99999-------9975431234566771899934888753-121066279999999984990---9999 Q gi|254780768|r 182 ALEGIEGTD--SMLQR-------IVDCRNNGRILAGKSGVLVKMCKSQQDM-RADLPSIGAKTVQNVIKAGLA---GIAL 248 (281) Q Consensus 182 aiEa~eGTD--~mi~R-------~~~~~~~~~~~~~~~~ilvK~~K~~QD~-r~DlP~IG~~Ti~~~~~ag~~---giai 248 (281) +-|-...|| ...+| +.++... .+-+..+.==|||+.-+ +.-+|++|. ++..+.+.|.. ++.+ T Consensus 141 G~~y~~~~d~~~~~d~~~e~l~~v~~ya~~----~g~gv~~~IEpKP~EP~~~~~i~d~~~-al~~i~~lg~p~~vglnl 215 (393) T 1xim_A 141 GAEYDSAKDVSAALDRYREALNLLAQYSED----RGYGLRFAIEPKPNEPRGDILLPTAGH-AIAFVQELERPELFGINP 215 (393) T ss_dssp EESSGGGCCHHHHHHHHHHHHHHHHHHHHH----HTCCCEEEEECCSSSSSSEESSCSHHH-HHHHHTTSSSGGGEEECC T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCCCEECCCHHH-HHHHHHHHCCCCCEEEEC T ss_conf 667886569999999999999999999986----089806997237888875344188999-999999819954277854 Q ss_pred ECCCEEEE--CHHHHHHHHHHCC Q ss_conf 73977998--5899999999879 Q gi|254780768|r 249 EAGKSLVL--EKELVKKHADEAG 269 (281) Q Consensus 249 ea~~~lil--d~~~~i~~a~~~~ 269 (281) +.+...+. +.+..++.|-.++ T Consensus 216 D~gH~~~ag~n~~~~ia~a~~~g 238 (393) T 1xim_A 216 ETGHEQMSNLNFTQGIAQALWHK 238 (393) T ss_dssp BHHHHHTTTCCHHHHHHHHHHHT T ss_pred CHHHHHHCCCCHHHHHHHHHHCC T ss_conf 41025323899899999999659 No 92 >2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} Probab=53.58 E-value=8.9 Score=17.48 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=13.0 Q ss_pred HHHHHHHHHCCCEEEE-EE Q ss_conf 9999999984990999-97 Q gi|254780768|r 232 AKTVQNVIKAGLAGIA-LE 249 (281) Q Consensus 232 ~~Ti~~~~~ag~~gia-ie 249 (281) .+.++.+.++|++|.+ +| T Consensus 245 ~~il~~L~~~gy~G~~~~E 263 (290) T 2zvr_A 245 RSVFNTLKEIGYNRYVSVE 263 (290) T ss_dssp HHHHHHHHHTTCCSEEEEC T ss_pred HHHHHHHHHHCCCEEEEEE T ss_conf 9999999984998179998 No 93 >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Probab=53.41 E-value=10 Score=16.99 Aligned_cols=118 Identities=17% Similarity=0.205 Sum_probs=68.1 Q ss_pred EEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHH---HHHHCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 873899999999998649540677024232100011102603578999999---87510480358999999999769748 Q gi|254780768|r 48 ELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMI---WQLVSGGNAAILKASIDLLESYGVSV 124 (281) Q Consensus 48 ~~~ig~ig~li~~Lk~~~i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l---~~~~~~gDd~iL~~i~~~fe~~G~~v 124 (281) .++..++.++++.+.+.++..+.+.|+ .|.+. +|+.......+-. .....-+...++...+..|.+.|+.- T Consensus 49 ~Ls~eei~~ii~~~~~~gv~~i~ltGG---EPllr---~d~~~~i~~~~~~~~~~~~~~Tng~ll~~~~~~~L~~~gl~~ 122 (340) T 1tv8_A 49 LLTFDEMARIAKVYAELGVKKIRITGG---EPLMR---RDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRR 122 (340) T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEESS---CGGGS---TTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCE T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCC---CHHCC---HHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCCE T ss_conf 489999999999998769809996388---62007---006999987521022102421078653421389999849988 Q ss_pred E--CHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC Q ss_conf 2--11222524203543345546532347889989999997332672259998197 Q gi|254780768|r 125 V--GAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGG 178 (281) Q Consensus 125 i--~~~~~l~~ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g 178 (281) + +.+..-++..- .++++. .....+..+.+.+++.+ +.+.-.+||..+ T Consensus 123 v~ISld~~~~e~~~---~i~g~~---g~~~~~~~~i~~~~~~g-~~v~in~vv~~~ 171 (340) T 1tv8_A 123 INVSLDAIDDTLFQ---SINNRN---IKATTILEQIDYATSIG-LNVKVNVVIQKG 171 (340) T ss_dssp EEEECCCSSHHHHH---HHHSSC---CCHHHHHHHHHHHHHTT-CEEEEEEEECTT T ss_pred EECCCCCCCHHHHH---HHHHCC---CCCHHHHHHHHHHHHCC-CCEEEEEEECCC T ss_conf 85046776588887---765105---65000037999999879-987999897488 No 94 >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Probab=53.16 E-value=11 Score=16.89 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=48.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCC--CCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 973999977980389999999978997899995486673--103885678738999999999986495406770242 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSF--DWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~--~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) |+ +-|..|+|-+=..+++.+.++|++++.+.-...... ..++..+...++.....+...+....+..++..... T Consensus 1 MK-IlITGatGfIG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~~~~~ 76 (311) T 2p5y_A 1 MR-VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQ 76 (311) T ss_dssp CE-EEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSC T ss_pred CE-EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 96-99988888799999999997869899997888677645133796799753588999999973687378740324 No 95 >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A Probab=51.70 E-value=4.6 Score=19.38 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=15.6 Q ss_pred EEEEEECC---CCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 39999779---80389999999978997899995 Q gi|254780768|r 3 RLLIIAGS---GMLPYYVAKAARLKNDEPVIASV 33 (281) Q Consensus 3 kigIIAG~---G~LP~~ia~~~~~~g~~~~ii~l 33 (281) ++|++.-+ +..-..+++.++..|++.+.+.. T Consensus 15 sIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~p 48 (140) T 1iuk_A 15 TIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNP 48 (140) T ss_dssp EEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECG T ss_pred EEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECC T ss_conf 6999810699998399999999978993388787 No 96 >3a4v_A NDP-sugar epimerase; L-threonine dehydrogenase, pyruvate, oxidoreductase; HET: NAD; 1.78A {Thermoplasma volcanium} PDB: 3a1n_A* Probab=51.57 E-value=11 Score=16.72 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=52.6 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 999779803899999999789978999954866731038856787389999999999864954067702423 Q gi|254780768|r 5 LIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAID 76 (281) Q Consensus 5 gIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~ 76 (281) =|..|.|-+=..+++++.++|+.+.++... ....+..++.+...++.+...+-+.++..+++.|+=+.... T Consensus 3 LItGgtGfiG~~l~~~L~~~~~~v~~i~~~-~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~d~Vih~aa~~ 73 (317) T 3a4v_A 3 LVTGSSGQIGTELVPYLAEKYGKKNVIASD-IVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGIL 73 (317) T ss_dssp EEESTTSTTHHHHHHHHHHHHCGGGEEEEE-SSCCCCTTSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCC T ss_pred EEECCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCC T ss_conf 998388789999999999759946999888-76677678779992279999999999865986999723102 No 97 >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Probab=50.91 E-value=12 Score=16.65 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=45.6 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--CCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 3999977980389999999978997899995486673103--885678738999999999986495406770242 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQ--DFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~--~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) |+-|..++|.+=..+++.+.++|++++++.-.......+. ..++...++.+...+.+.++ +|+.|+.+..+ T Consensus 15 kilVtGatG~vG~~l~~~L~~~g~~V~~l~R~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~~~--~~d~Vih~Aa~ 87 (342) T 2x4g_A 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALR--GLDGVIFSAGY 87 (342) T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTT--TCSEEEEC--- T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCEEEEEECCCHHHHHHHHH--CCCEEEECCEE T ss_conf 49998999889999999999786989999788113545033797799940899999999983--89899964444 No 98 >2qip_A Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633} Probab=50.76 E-value=11 Score=16.73 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 478899899999973326722599981 Q gi|254780768|r 150 VKRDILAAMKSAEALSELDVGQSAVSI 176 (281) Q Consensus 150 ~~~dI~~g~~i~~~l~~~DiGQsvVv~ 176 (281) ...|+..+..++......|. .|+|. T Consensus 92 ~~~Dv~l~id~~~~~~~~d~--~vLvS 116 (165) T 2qip_A 92 GDWDVGITLDAIEIAPDVDR--VILVS 116 (165) T ss_dssp CCCHHHHHHHHHHHGGGCSE--EEEEC T ss_pred CCCHHHHHHHHHHHCCCCCE--EEEEE T ss_conf 61179999999962776898--99995 No 99 >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* Probab=49.83 E-value=12 Score=16.54 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=37.3 Q ss_pred CC-EEEEEECCCCH--------HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC-EEEEE-----HHHHHHHHHHHHHCC Q ss_conf 97-39999779803--------89999999978997899995486673103885-67873-----899999999998649 Q gi|254780768|r 1 MK-RLLIIAGSGML--------PYYVAKAARLKNDEPVIASVLNECSFDWQDFE-CRELP-----LGDFCVLRSILHQYN 65 (281) Q Consensus 1 M~-kigIIAG~G~L--------P~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~-~~~~~-----ig~ig~li~~Lk~~~ 65 (281) |+ |||+|+|+.+- -..+++++++.|++++++.........++... ...++ .+.=+.+...|...+ T Consensus 1 m~~ki~vl~GG~S~E~~iSl~Sg~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~d~vf~~~hG~~~ed~~~~~~le~~~ 80 (306) T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMG 80 (306) T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHHHT T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC T ss_conf 98509999385873128699999999999988699899989985548888644898899934688541379999999879 Q ss_pred CCE Q ss_conf 540 Q gi|254780768|r 66 IGR 68 (281) Q Consensus 66 i~~ 68 (281) +.+ T Consensus 81 ipy 83 (306) T 1iow_A 81 LPY 83 (306) T ss_dssp CCB T ss_pred CEE T ss_conf 638 No 100 >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; 15025322, structural genomics, JCSG, protein structure initiative, PSI; HET: NAI UNL; 2.05A {Clostridium acetobutylicum atcc 824} SCOP: c.2.1.2 Probab=49.82 E-value=10 Score=17.02 Aligned_cols=229 Identities=14% Similarity=0.077 Sum_probs=103.4 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH Q ss_conf 39999779803899999999789978999954866731038856787389999999999864954067702423210001 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNVQ 82 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~krP~~~ 82 (281) |+-|..|+|-+=..+++.+.++|++++.+... +. ++.....+-+.++..+++.++-+.... .+... T Consensus 14 KILItGatGfIG~~lv~~L~~~g~~V~~~~r~-~~------------dl~~~~~v~~~~~~~~~d~vi~~a~~~-~~~~~ 79 (292) T 1vl0_A 14 KILITGANGQLGREIQKQLKGKNVEVIPTDVQ-DL------------DITNVLAVNKFFNEKKPNVVINCAAHT-AVDKC 79 (292) T ss_dssp EEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-TC------------CTTCHHHHHHHHHHHCCSEEEECCCCC-CHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECH-HC------------CCCCHHHHHHHHHHCCCCEEEECCCCC-CCCCC T ss_conf 58998999889999999998687989993231-25------------778999999999864997999886335-55322 Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCE--EECHHHCCHHHCCC-CCCCCCCCCCHHHHHHHHHHHH Q ss_conf 11026035789999998751048035899999999976974--82112225242035-4334554653234788998999 Q gi|254780768|r 83 DLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVS--VVGAHEIVPELLVQ-VGSLGTCVPNRDVKRDILAAMK 159 (281) Q Consensus 83 ~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~--vi~~~~~l~~ll~~-~G~l~~~~p~~~~~~dI~~g~~ 159 (281) ...++. .. .... . ....+.....+.+.. ..+...+....-.. ...-....|....-..-..+.. T Consensus 80 ~~~~~~-----~~----~~n~--~--~~~~~~~~~~~~~~~~~~~ss~~v~~~~~~~~~~e~d~~~~~~~~~~~~~~~e~ 146 (292) T 1vl0_A 80 EEQYDL-----AY----KINA--I--GPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGEN 146 (292) T ss_dssp HHCHHH-----HH----HHHT--H--HHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHH T ss_pred CCCHHH-----HH----HHCC--C--CCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 457788-----87----6422--4--530555554311111223444134216766654324422234510035678889 Q ss_pred HHHHHCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCC--CHHHHHH Q ss_conf 99973326722599981974889625342179999999754312345667718999348887531210662--7999999 Q gi|254780768|r 160 SAEALSELDVGQSAVSIGGRVVALEGIEGTDSMLQRIVDCRNNGRILAGKSGVLVKMCKSQQDMRADLPSI--GAKTVQN 237 (281) Q Consensus 160 i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD~mi~R~~~~~~~~~~~~~~~~ilvK~~K~~QD~r~DlP~I--G~~Ti~~ 237 (281) .+++.+. +.++++-+.+.+-. ..-...++... .. ...+.+- .+| ..++-.+ =.+-+.. T Consensus 147 ~~~~~~~----~~~i~R~~~vyG~~-~~~~~~~~~~~----~~------~~~~~~~---~~~--~~~~i~v~D~a~~~~~ 206 (292) T 1vl0_A 147 FVKALNP----KYYIVRTAWLYGDG-NNFVKTMINLG----KT------HDELKVV---HDQ--VGTPTSTVDLARVVLK 206 (292) T ss_dssp HHHHHCS----SEEEEEECSEESSS-SCHHHHHHHHH----HH------CSEEEEE---SSC--EECCEEHHHHHHHHHH T ss_pred HHHHHCC----CCCCCCEEEEECCC-CCHHHHHHHHH----HC------CCCCEEE---CCC--CCCCEEHHHHHHHHHH T ss_conf 9999689----85553324682799-76677877887----60------8872652---475--0385439999999999 Q ss_pred HHHCCCEEEEEECCCEEEECHHHHHHHHHHCCC--EEEEECHH Q ss_conf 998499099997397799858999999998796--89995775 Q gi|254780768|r 238 VIKAGLAGIALEAGKSLVLEKELVKKHADEAGI--FVCGIDRE 278 (281) Q Consensus 238 ~~~ag~~giaiea~~~lild~~~~i~~a~~~~i--~i~g~~~~ 278 (281) +.+.+..|+.--.+.--+--++-+-..++..|. -+..++.+ T Consensus 207 ~~~~~~~g~~~~~~~~~~s~~ela~~i~~~~g~~~~i~~i~~~ 249 (292) T 1vl0_A 207 VIDEKNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTE 249 (292) T ss_dssp HHHHTCCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECST T ss_pred HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCHH T ss_conf 9854667954751899747999999999997999738765577 No 101 >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Probab=49.72 E-value=12 Score=16.53 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=29.4 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 973999977980389999999978997899995 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASV 33 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l 33 (281) |++--+|-|.|-+=..+++.+.++|++++++.- T Consensus 4 M~~~vlItGaGfIGs~lv~~Ll~~G~~V~~l~R 36 (286) T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSR 36 (286) T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEES T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 898389989619999999999978998999948 No 102 >5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* Probab=49.36 E-value=12 Score=16.61 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=53.3 Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCC---CCC--HH---- Q ss_conf 038999999997899789999548667310388567873899999999998649540677024232---100--01---- Q gi|254780768|r 12 MLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDR---RPN--VQ---- 82 (281) Q Consensus 12 ~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~k---rP~--~~---- 82 (281) .+...+++.+...|.++.+..+......++. ..+-+++.-...- .|. +. T Consensus 14 ~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~----------------------~~d~iv~g~pt~~~g~~p~~~~~~~~~ 71 (138) T 5nul_A 14 KMAELIAKGIIESGKDVNTINVSDVNIDELL----------------------NEDILILGCSAMTDEVLEESEFEPFIE 71 (138) T ss_dssp HHHHHHHHHHHHTTCCCEEEEGGGCCHHHHT----------------------TCSEEEEEECCBTTTBCCTTTHHHHHH T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCHHHHC----------------------CCCEEEEEECCCCCCCCCHHHHHHHHH T ss_conf 9999999987645973799983006632545----------------------499899997365788797689999999 Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 1102603578999999875104803589999999997697482112225242035433455465323478899899999 Q gi|254780768|r 83 DLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMKSA 161 (281) Q Consensus 83 ~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~dI~~g~~i~ 161 (281) .+..++..... .++.....+...-++.+.+.+++.|+++++.. +.....|++...+-.++|.+++ T Consensus 72 ~~~~~~~~k~~---~~fg~~~~~~~~~~~~l~~~l~~~G~~~v~~~-----------~~~~~~~de~~e~~~~~g~~lA 136 (138) T 5nul_A 72 EISTKISGKKV---ALFGSYGWGDGKWMRDFEERMNGYGCVVVETP-----------LIVQNEPDEAEQDCIEFGKKIA 136 (138) T ss_dssp HHGGGCTTCEE---EEEEEESSSCSHHHHHHHHHHHHTTCEECSCC-----------EEEESSCGGGHHHHHHHHHHHH T ss_pred HHCCCCCCCEE---EEEEECCCCCCHHHHHHHHHHHHCCCEEECCC-----------EEECCCCCHHHHHHHHHHHHHH T ss_conf 81565579869---99995078855999999999998799896585-----------8988899789999999999985 No 103 >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A Probab=49.29 E-value=4.5 Score=19.47 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=20.8 Q ss_pred EEEEEE-CCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 399997-798038999999997899789999 Q gi|254780768|r 3 RLLIIA-GSGMLPYYVAKAARLKNDEPVIAS 32 (281) Q Consensus 3 kigIIA-G~G~LP~~ia~~~~~~g~~~~ii~ 32 (281) |||||- |.|++ ..+.++++..|.++..+. T Consensus 2 kI~IiDyg~gN~-~si~~~l~~~g~~~~~~~ 31 (201) T 1gpw_B 2 RIGIISVGPGNI-MNLYRGVKRASENFEDVS 31 (201) T ss_dssp EEEEECCSSSCC-HHHHHHHHHHSTTBSSCE T ss_pred EEEEEECCCCHH-HHHHHHHHHHCCCCCCCE T ss_conf 899991798589-999999998562045323 No 104 >2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis} Probab=49.08 E-value=13 Score=16.47 Aligned_cols=72 Identities=19% Similarity=0.141 Sum_probs=44.8 Q ss_pred CCE-EEEE-ECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 973-9999-77980389999999978997899995486673103885678738999999999986495406770242 Q gi|254780768|r 1 MKR-LLII-AGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 1 M~k-igII-AG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) |+| ||++ +|-|-|.+ ++++++.--+--++.+.+.+...+.+....++ ..-.-.++++|.+.+|+-+|+|=.- T Consensus 2 m~~pIgvfDSGiGGLtv--~~~l~~~~P~~~~iY~~D~a~~PYG~ks~~~i-~~~~~~~~~~l~~~~~~~IViACNT 75 (267) T 2gzm_A 2 LNRAIGVIDSGVGGLTV--AKELIRQLPKERIIYLGDTARCPYGPRSREEV-RQFTWEMTEHLLDLNIKMLVIACNT 75 (267) T ss_dssp TTSCEEEEESSSTTHHH--HHHHHHHCTTSCEEEEECTTTCCCTTSCHHHH-HHHHHHHHHHHHTTTCSEEEECCHH T ss_pred CCCCEEEEECCCCHHHH--HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 99978999789567999--99999978999989995588899899999999-9999999999986699899990773 No 105 >2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} Probab=48.94 E-value=13 Score=16.45 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=44.8 Q ss_pred CCE-EEEE-ECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 973-9999-77980389999999978997899995486673103885678738999999999986495406770242 Q gi|254780768|r 1 MKR-LLII-AGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 1 M~k-igII-AG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) |+| ||+. +|-|-|.+ .+++++.--.--++.+.+.+...+-+.....+ ..-.-+++++|.+++|+-+|+|=.- T Consensus 21 mn~PIgvfDSGvGGLtv--l~~l~~~lP~~~~iY~~D~~~~PYG~ks~eei-~~~~~~~~~~L~~~g~~~iVIACNT 94 (286) T 2jfq_A 21 MNKPIGVIDSGVGGLTV--AKEIMRQLPNETIYYLGDIGRCPYGPRPGEQV-KQYTVEIARKLMEFDIKMLVIACNT 94 (286) T ss_dssp CCSCEEEEESSSTTHHH--HHHHHHHCTTCCEEEEECTTTCCCTTSCHHHH-HHHHHHHHHHHTTSCCSEEEECCHH T ss_pred CCCCEEEEECCCCHHHH--HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 89988999789777999--99999978999989994588898888999999-9999999999986699999981675 No 106 >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Probab=48.78 E-value=13 Score=16.44 Aligned_cols=75 Identities=9% Similarity=0.007 Sum_probs=58.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC-------CCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 739999779803899999999789978999954866731-------0388567873899999999998649540677024 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFD-------WQDFECRELPLGDFCVLRSILHQYNIGRIVVAGA 74 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~-------~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~ 74 (281) +|+-|..|+|-+=..+++.+.++|++++.+......... .+.++....++.+...+-+.++...+..++.+.. T Consensus 10 KkILVTGgtGfIGs~L~~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~~~v~h~aa 89 (357) T 1rkx_A 10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAA 89 (357) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECCS T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEC T ss_conf 98999689978999999999977998999978998617677654014797699853689799999986148717898630 Q ss_pred CC Q ss_conf 23 Q gi|254780768|r 75 ID 76 (281) Q Consensus 75 V~ 76 (281) .. T Consensus 90 ~~ 91 (357) T 1rkx_A 90 QP 91 (357) T ss_dssp CC T ss_pred CC T ss_conf 57 No 107 >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} Probab=48.57 E-value=11 Score=16.81 Aligned_cols=36 Identities=11% Similarity=0.006 Sum_probs=27.7 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEE-EEEECCCC Q ss_conf 7399997798038999999997899789-99954866 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPV-IASVLNEC 37 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~-ii~l~~~~ 37 (281) .+||+|+=+|.+-..+...+...|.-+. ++++-+.. T Consensus 113 G~IgivSqSG~~~~~i~~~~~~~G~G~S~~vs~Gn~~ 149 (480) T 3dmy_A 113 GNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRD 149 (480) T ss_dssp EEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTT T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC T ss_conf 8458996473699999999997499867999838976 No 108 >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Probab=48.03 E-value=2.2 Score=21.49 Aligned_cols=73 Identities=18% Similarity=0.044 Sum_probs=47.8 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCC-C-CCCEEEE-------EHHHHHHHHHHHHHCCCCEEEE Q ss_conf 97399997798038999999997899789999548667310-3-8856787-------3899999999998649540677 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDW-Q-DFECREL-------PLGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~-~-~~~~~~~-------~ig~ig~li~~Lk~~~i~~ivm 71 (281) |=|==|||..|....-++++|++-|++.+.+.-....+... . ....+.+ +.-.+..++...++++|+ .|. T Consensus 1 m~~~~lianrgeia~r~~r~~~~~gi~tv~v~~~~d~~a~~~~~ad~~~~~~~~~~~~~yl~~~~i~~~a~~~~~d-ai~ 79 (681) T 3n6r_A 1 MFNKILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQ-AVH 79 (681) T ss_dssp -CCCBCBSCCHHHHHHHHHHHGGGSCCBCCEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHHHHHTCCS-CCB T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCHHHCCEEEEECCCCHHHHHCCHHHHHHHHHHCCCC-EEE T ss_conf 9645999888299999999999819939998883422699977798999808987242003899999999980999-993 Q ss_pred ECC Q ss_conf 024 Q gi|254780768|r 72 AGA 74 (281) Q Consensus 72 aG~ 74 (281) .|+ T Consensus 80 pgy 82 (681) T 3n6r_A 80 PGY 82 (681) T ss_dssp CCS T ss_pred CCH T ss_conf 680 No 109 >2ark_A Flavodoxin; FMN, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 Probab=48.03 E-value=13 Score=16.36 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=76.8 Q ss_pred CCEEEEEE--CCCC---HHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCEEEE--E------HHHHHHHHHHHHHCCC Q ss_conf 97399997--7980---38999999997-89978999954866731038856787--3------8999999999986495 Q gi|254780768|r 1 MKRLLIIA--GSGM---LPYYVAKAARL-KNDEPVIASVLNECSFDWQDFECREL--P------LGDFCVLRSILHQYNI 66 (281) Q Consensus 1 M~kigIIA--G~G~---LP~~ia~~~~~-~g~~~~ii~l~~~~~~~~~~~~~~~~--~------ig~ig~li~~Lk~~~i 66 (281) |.|+.|+- .+|+ +...|++.++. .|.++.+..+......++.+++...+ + -.++...++.+...-- T Consensus 4 M~kilIvY~S~~G~T~~~A~~iaeg~~~~~g~~v~~~~~~~~~~~dl~~~D~ii~GsPty~g~~~~~~~~fld~~~~~~~ 83 (188) T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLW 83 (188) T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTT T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 88599999899859999999999854125695699975686998999838944872750102347999999999888998 Q ss_pred CEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHC-CCCC-CCCCC Q ss_conf 406770242321000111026035789999998751048035899999999976974821122252420-3543-34554 Q gi|254780768|r 67 GRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELL-VQVG-SLGTC 144 (281) Q Consensus 67 ~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll-~~~G-~l~~~ 144 (281) .+ +.||+- -.|. -......|+...|..+..+|...|+.+++......... .+.| ...+. T Consensus 84 ~~--l~gK~~--a~F~---------------s~g~~~gG~e~al~~~~~~l~~~Gm~vvg~~~~~~~~~~~~~g~~~~~~ 144 (188) T 2ark_A 84 GE--IDGKIA--CAFS---------------SSGGWGGGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGE 144 (188) T ss_dssp TS--CTTCEE--EEEE---------------EESSBTSSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESS T ss_pred HH--HCCCEE--EEEE---------------ECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCC T ss_conf 87--659608--9999---------------3377899889999999999977897797035334666678777503899 Q ss_pred CCCHHHHHH-HHHHHHHHHHHCCCCCEE Q ss_conf 653234788-998999999733267225 Q gi|254780768|r 145 VPNRDVKRD-ILAAMKSAEALSELDVGQ 171 (281) Q Consensus 145 ~p~~~~~~d-I~~g~~i~~~l~~~DiGQ 171 (281) .|++.+.+. -.+|.++++....+.-|+ T Consensus 145 ~~~~~~le~ar~lG~~lA~~~~~l~~gr 172 (188) T 2ark_A 145 PRSEEEKEACRRLGRRLAEWVAIFVDGR 172 (188) T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTSCC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9499999999999999999999999710 No 110 >2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* Probab=47.89 E-value=13 Score=16.35 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=15.4 Q ss_pred CHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEE Q ss_conf 79999999984990999973977998589999999987968999 Q gi|254780768|r 231 GAKTVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274 (281) Q Consensus 231 G~~Ti~~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~g 274 (281) -++.++.+.+.|.+.+.+.+|.. .++..+.|+++|+.++| T Consensus 90 v~~il~~~~~~g~k~v~~~~g~~----~ee~~~~a~~~gi~~v~ 129 (144) T 2d59_A 90 TMEYVEQAIKKGAKVVWFQYNTY----NREASKKADEAGLIIVA 129 (144) T ss_dssp HHHHHHHHHHHTCSEEEECTTCC----CHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHHCCCCEEEEECCCC----CHHHHHHHHHCCCEEEC T ss_conf 89999999975999999824644----99999999996995790 No 111 >2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Probab=47.87 E-value=13 Score=16.34 Aligned_cols=113 Identities=17% Similarity=0.076 Sum_probs=59.5 Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHCCCCEEEEEE-CCCCCCC------CCCCCEEEE-------EHHHHHHHHHHHHHCC Q ss_conf 97399997-7980389999999978997899995-4866731------038856787-------3899999999998649 Q gi|254780768|r 1 MKRLLIIA-GSGMLPYYVAKAARLKNDEPVIASV-LNECSFD------WQDFECREL-------PLGDFCVLRSILHQYN 65 (281) Q Consensus 1 M~kigIIA-G~G~LP~~ia~~~~~~g~~~~ii~l-~~~~~~~------~~~~~~~~~-------~ig~ig~li~~Lk~~~ 65 (281) |-|||+.+ |+|.-=..+.++++......-++.+ .+..+.. ..+...... +-..-..+++.|+..+ T Consensus 1 mmkiavl~SG~Gsnl~ali~~~~~~~~~~~I~~Vitn~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (216) T 2ywr_A 1 MLKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKG 80 (216) T ss_dssp CEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTT T ss_pred CCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC T ss_conf 96899999179567999999987399998899999808850777664514863035421456876677999999998709 Q ss_pred CCEEEEECCCCC-------CCC--HHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 540677024232-------100--01110260357899999987510480358999999999769748 Q gi|254780768|r 66 IGRIVVAGAIDR-------RPN--VQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSV 124 (281) Q Consensus 66 i~~ivmaG~V~k-------rP~--~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~v 124 (281) ++-+|.+|.... +|. .-++.|.+- + ..+|-+.+-.++.+--+.-|.++ T Consensus 81 ~Dliv~~g~~~il~~~~l~~~~~~~iN~HpSlL-----P------~~rG~~p~~~ai~~g~~~~G~Ti 137 (216) T 2ywr_A 81 VELVVLAGFMRILSHNFLKYFPNKVINIHPSLI-----P------AFQGLHAQKQAVEFGVKFSGCTV 137 (216) T ss_dssp CCEEEESSCCSCCCHHHHTTSTTCEEEEESSCT-----T------TTCSTTHHHHHHHHTCSEEEEEE T ss_pred CCEEEEECCCCCCCHHHHHHCCCCEEECCCCCC-----C------CCCCCCCHHHHHHCCCCCCCCEE T ss_conf 999999471211778786203698278189986-----6------58986714789976996046279 No 112 >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5} Probab=47.71 E-value=13 Score=16.33 Aligned_cols=29 Identities=24% Similarity=0.120 Sum_probs=26.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEE Q ss_conf 97399997798038999999997899789 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPV 29 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ 29 (281) |++|||..|.|.==-.+++.+.+.|++++ T Consensus 1 M~kIgItG~iGSGKSTv~~~l~~~G~~vi 29 (204) T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRELGAYVL 29 (204) T ss_dssp CCEEEEEECTTSSHHHHHHHHHHTTCEEE T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEE T ss_conf 94999979997779999999998799399 No 113 >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Probab=46.65 E-value=12 Score=16.49 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=27.8 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9739999779803899999999789978999954 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVL 34 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~ 34 (281) | |+.|+.|+|.+=..+++.+..+|++++.+.-. T Consensus 22 M-kIlI~GasG~iG~~lv~~Ll~~g~~V~~l~R~ 54 (236) T 3e8x_A 22 M-RVLVVGANGKVARYLLSELKNKGHEPVAMVRN 54 (236) T ss_dssp C-EEEEETTTSHHHHHHHHHHHHTTCEEEEEESS T ss_pred C-EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 9-08999998889999999999785989999888 No 114 >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} Probab=46.46 E-value=14 Score=16.20 Aligned_cols=166 Identities=10% Similarity=0.059 Sum_probs=81.1 Q ss_pred CCEEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCC-----CCC--CCCEEE--EE---HHHHHHHHHHHHHC--C Q ss_conf 9739999779-80389999999978997899995486673-----103--885678--73---89999999999864--9 Q gi|254780768|r 1 MKRLLIIAGS-GMLPYYVAKAARLKNDEPVIASVLNECSF-----DWQ--DFECRE--LP---LGDFCVLRSILHQY--N 65 (281) Q Consensus 1 M~kigIIAG~-G~LP~~ia~~~~~~g~~~~ii~l~~~~~~-----~~~--~~~~~~--~~---ig~ig~li~~Lk~~--~ 65 (281) |+|.+||-|. +-+=..+++.+-++|.++++...+++... .++ ..++.. .+ -.++..+++...++ . T Consensus 3 M~K~alITGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~ 82 (246) T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS 82 (246) T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC T ss_conf 98789992688689999999999879989997189989999999999954996899981389999999999999998299 Q ss_pred CCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CEEECHHHCCHHHCCCCCCCCCC Q ss_conf 54067702423210001110260357899999987510480358999999999769-74821122252420354334554 Q gi|254780768|r 66 IGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYG-VSVVGAHEIVPELLVQVGSLGTC 144 (281) Q Consensus 66 i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G-~~vi~~~~~l~~ll~~~G~l~~~ 144 (281) ++-+|-.-.+..+-.+.++..+ ...+.+ ...-.+--.+.+.+...+.+++ -.++-........ ..++. ... T Consensus 83 iDiLVnnAg~~~~~~~~~~~~~-----~~~~~~-~vNl~~~~~~~~~~~~~m~~~~~g~iI~isS~~~~~-~~~~~-~~Y 154 (246) T 3osu_A 83 LDVLVNNAGITRDNLLMRMKEQ-----EWDDVI-DTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV-GNPGQ-ANY 154 (246) T ss_dssp CCEEEECCCCCCCCCTTTCCHH-----HHHHHH-HHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-CCTTC-HHH T ss_pred CCEEEECCCCCCCCCHHHCCHH-----HHHHHH-HHHHHCHHHHHHHHHHHHHHCCCCEEEEECCHHHCC-CCCCC-HHH T ss_conf 8799988978899882559999-----999999-998304087899989999864998479971466567-89997-789 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 65323478899899999973326722599981 Q gi|254780768|r 145 VPNRDVKRDILAAMKSAEALSELDVGQSAVSI 176 (281) Q Consensus 145 ~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~ 176 (281) ..+|... ..+-..++.++++..|-=-+|.- T Consensus 155 ~asKaal--~~lt~~lA~el~~~gIrVN~I~P 184 (246) T 3osu_A 155 VATKAGV--IGLTKSAARELASRGITVNAVAP 184 (246) T ss_dssp HHHHHHH--HHHHHHHHHHHGGGTEEEEEEEE T ss_pred HHHHHHH--HHHHHHHHHHHHHHCCEEEEECC T ss_conf 9999999--99999999996066848966631 No 115 >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} Probab=46.04 E-value=14 Score=16.16 Aligned_cols=60 Identities=12% Similarity=-0.061 Sum_probs=38.4 Q ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC---CC-CCCEEEE--------------EHHHHHHHHHHHHHCCCC Q ss_conf 99779803899999999789978999954866731---03-8856787--------------389999999999864954 Q gi|254780768|r 6 IIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFD---WQ-DFECREL--------------PLGDFCVLRSILHQYNIG 67 (281) Q Consensus 6 IIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~---~~-~~~~~~~--------------~ig~ig~li~~Lk~~~i~ 67 (281) |||..|.....+.+.|++.|++.+.+.= ..|.. .. ..+.+.+ +.-++..++..-+..+++ T Consensus 18 lianrg~ia~r~~r~~~~~g~~~v~v~~--~~d~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~yl~~~~i~~~a~~~~~~ 95 (1165) T 2qf7_A 18 LVANRSEIAIRVFRAANELGIKTVAIWA--EEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGAD 95 (1165) T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEEEEC--GGGTTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHHTCS T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEC--HHHHCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 9988719999999999983990999928--78806877887888999578730013566210115999999999996919 No 116 >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, biosynthetic protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Probab=45.41 E-value=14 Score=16.10 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=49.7 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEE-E--------------CCCCCC----------CCCCCCEEEEEHHHHHH Q ss_conf 7399997798038999999997899789999-5--------------486673----------10388567873899999 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIAS-V--------------LNECSF----------DWQDFECRELPLGDFCV 56 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~-l--------------~~~~~~----------~~~~~~~~~~~ig~ig~ 56 (281) .||-|..|+|-+=..+++.+.++|++++++. | ...... .-+++++...++.+... T Consensus 12 ~kILVTG~tGfIG~~l~~~Ll~~G~~V~~iD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~ 91 (404) T 1i24_A 12 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFEF 91 (404) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHH T ss_conf 98999899868999999999978498999946776532110221213433214777777775137872799843789999 Q ss_pred HHHHHHHCCCCEEEEECCC Q ss_conf 9999986495406770242 Q gi|254780768|r 57 LRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 57 li~~Lk~~~i~~ivmaG~V 75 (281) +-+.++..+++.|+=.... T Consensus 92 l~~~~~~~~~d~ViH~Aa~ 110 (404) T 1i24_A 92 LAESFKSFEPDSVVHFGEQ 110 (404) T ss_dssp HHHHHHHHCCSEEEECCSC T ss_pred HHHHHHHCCCCEEEECCCC T ss_conf 9999985699789985465 No 117 >3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} Probab=45.27 E-value=14 Score=16.08 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=27.4 Q ss_pred CC-EEEEEECCCCH-HHHHHHHHHHCCCCEEEEEE Q ss_conf 97-39999779803-89999999978997899995 Q gi|254780768|r 1 MK-RLLIIAGSGML-PYYVAKAARLKNDEPVIASV 33 (281) Q Consensus 1 M~-kigIIAG~G~L-P~~ia~~~~~~g~~~~ii~l 33 (281) |+ |+|||...|.- =+.++++++..|.++.++.- T Consensus 1 ~k~ki~ii~~~G~n~~~~v~~Al~~lG~~~~i~~~ 35 (213) T 3d54_D 1 MKPRACVVVYPGSNCDRDAYHALEINGFEPSYVGL 35 (213) T ss_dssp CCCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECT T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEC T ss_conf 99649999249718699999999986990899847 No 118 >2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4 Probab=43.98 E-value=14 Score=16.03 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=14.3 Q ss_pred HHHHHHHHCCCEE--EEEEC Q ss_conf 9999999849909--99973 Q gi|254780768|r 233 KTVQNVIKAGLAG--IALEA 250 (281) Q Consensus 233 ~Ti~~~~~ag~~g--iaiea 250 (281) ..++.+.++|+.| +.+|. T Consensus 242 ~~~~~L~~~GY~G~~islE~ 261 (296) T 2g0w_A 242 GFAKILKEHGVNPRVMGVEV 261 (296) T ss_dssp HHHHHHHHHTCCCSCEEECC T ss_pred HHHHHHHHHCCCCCEEEEEE T ss_conf 99999998399988799994 No 119 >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Probab=43.76 E-value=11 Score=16.75 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=23.8 Q ss_pred HHHHHHHCCCCEEEEEECCCCC-CCCCC-------C--CEEEEE-HH---HHHHHHHHHHHCCCC Q ss_conf 9999997899789999548667-31038-------8--567873-89---999999999864954 Q gi|254780768|r 17 VAKAARLKNDEPVIASVLNECS-FDWQD-------F--ECRELP-LG---DFCVLRSILHQYNIG 67 (281) Q Consensus 17 ia~~~~~~g~~~~ii~l~~~~~-~~~~~-------~--~~~~~~-ig---~ig~li~~Lk~~~i~ 67 (281) .+.+....|..|+++.+...+- .+... . ...... .| ++.++.++.+++++. T Consensus 93 t~~ai~~~G~~pv~~Did~~t~~id~~~l~~~i~~~tkaIi~vh~~G~~~d~~~I~~i~~~~~i~ 157 (390) T 3b8x_A 93 TYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDII 157 (390) T ss_dssp HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEECGGGCCCCHHHHHHHHTTSCCE T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCE T ss_conf 49999876998998726654313478999987424870533005678846789999999872985 No 120 >2q02_A Putative cytoplasmic protein; NP_463296.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 Probab=43.41 E-value=15 Score=15.89 Aligned_cols=150 Identities=14% Similarity=0.043 Sum_probs=67.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHC Q ss_conf 89999999999864954067702423210001110260357899999987510480358999999999769748211222 Q gi|254780768|r 51 LGDFCVLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEI 130 (281) Q Consensus 51 ig~ig~li~~Lk~~~i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~ 130 (281) +.++.++++..+.-|++.+++.+.-. +.-. + .... -.-|+.+.++.++.|+++. ... T Consensus 84 ~~~~~~~i~~A~~lG~~~i~~~~~~~--~~~~----~---~~~~------------~~~l~~l~~~a~~~Gv~l~-~E~- 140 (272) T 2q02_A 84 VKKTEGLLRDAQGVGARALVLCPLND--GTIV----P---PEVT------------VEAIKRLSDLFARYDIQGL-VEP- 140 (272) T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCS--SBCC----C---HHHH------------HHHHHHHHHHHHTTTCEEE-ECC- T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC--CCCC----H---HHHH------------HHHHHHHHHHHHCCCCEEE-EEE- T ss_conf 99999999999980999799927998--7610----3---9999------------9999999988612697799-998- Q ss_pred CHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 52420354334554653234788998999999733267225999819748896253421799999997543123456677 Q gi|254780768|r 131 VPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGRVVALEGIEGTDSMLQRIVDCRNNGRILAGKS 210 (281) Q Consensus 131 l~~ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD~mi~R~~~~~~~~~~~~~~~ 210 (281) + +.. .....+...++.+++..++ .+| ++..-++... .++++- .....+... .-. T Consensus 141 ~-------~~~------~~~~~~~~~a~~li~~~~~-~~~--l~~D~~h~~~---~~~~~~--~~~~~~~~~-----~i~ 194 (272) T 2q02_A 141 L-------GFR------VSSLRSAVWAQQLIREAGS-PFK--VLLDTFHHHL---YEEAEK--EFASRIDIS-----AIG 194 (272) T ss_dssp C-------CST------TCSCCCHHHHHHHHHHHTC-CCE--EEEEHHHHHH---CTTHHH--HHHHHCCGG-----GEE T ss_pred C-------CCC------CCHHCCHHHHHHHHHHCCC-CEE--EEEECCHHHH---CCCCHH--HHHHHHCHH-----HEE T ss_conf 9-------887------6400589999999997098-658--9840521331---189849--999983722-----557 Q ss_pred EEEEEECCCC------CCCEEEECCCC-----HHHHHHHHHCCCEEE-EEE Q ss_conf 1899934888------75312106627-----999999998499099-997 Q gi|254780768|r 211 GVLVKMCKSQ------QDMRADLPSIG-----AKTVQNVIKAGLAGI-ALE 249 (281) Q Consensus 211 ~ilvK~~K~~------QD~r~DlP~IG-----~~Ti~~~~~ag~~gi-aie 249 (281) -|=+|-.+.. .|.+..+|-=| ++.++.+.++|++|- .+| T Consensus 195 ~vH~~d~~~~~~~~~~~~~~r~~pg~g~~id~~~~~~~L~~~GY~G~is~E 245 (272) T 2q02_A 195 LVHLSGVEDTRPTEALADEQRIMLSEKDVMQNYQQVQRLENMGYRGIYAFE 245 (272) T ss_dssp EEEECBCCCCSCGGGCCGGGCBCCCTTCSSCHHHHHHHHHHTTCCSCEEEC T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 999831578664200365654368998840899999999973997129998 No 121 >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Probab=43.33 E-value=11 Score=16.74 Aligned_cols=29 Identities=17% Similarity=-0.015 Sum_probs=24.1 Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHCCCCEE Q ss_conf 973-99997798038999999997899789 Q gi|254780768|r 1 MKR-LLIIAGSGMLPYYVAKAARLKNDEPV 29 (281) Q Consensus 1 M~k-igIIAG~G~LP~~ia~~~~~~g~~~~ 29 (281) |.. |||..|.|.==-.+++.+++.|++++ T Consensus 1 M~~iIgitG~igSGKStv~~~l~~~G~~vi 30 (206) T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTDLGVPLV 30 (206) T ss_dssp CCEEEEEECSTTSCHHHHHHHHHTTTCCEE T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCEEE T ss_conf 988999889987669999999998899699 No 122 >3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} Probab=43.14 E-value=4.9 Score=19.21 Aligned_cols=208 Identities=13% Similarity=0.005 Sum_probs=85.9 Q ss_pred HHHHHHHHHCCCCEEEEEEC-CCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCHHHHHH Q ss_conf 99999999789978999954-86673103885678738999999999986495406770242321000111026035789 Q gi|254780768|r 15 YYVAKAARLKNDEPVIASVL-NECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLR 93 (281) Q Consensus 15 ~~ia~~~~~~g~~~~ii~l~-~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~krP~~~~l~~D~~~~~~ 93 (281) ..+.+.+...|.++..+... +...++ -......+.++.++++.-+..|++.+++..... ++.-. +. .. T Consensus 49 ~e~~~~l~~~gl~v~~~~~~~~~~~~d---~~~~~~~i~~~~~~i~~a~~lG~~~i~~~~g~~-~~~~~----~~---~~ 117 (284) T 3ju2_A 49 GEAGRIVRANGLKLTGLCRGGFFPAPD---ASGREKAIDDNRRAVDEAAELGADCLVLVAGGL-PGGSK----NI---DA 117 (284) T ss_dssp HHHHHHHHHTTCEESCEEEEECCCCSS---HHHHHHHHHHHHHHHHHHHHHTBSCEEEECBCC-CTTCC----CH---HH T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC-CCCCC----CH---HH T ss_conf 999999998399599987676668899---899999999999999999994998369567986-67889----99---99 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 99999875104803589999999997697482112225242035433455465323478899899999973326722599 Q gi|254780768|r 94 ISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSA 173 (281) Q Consensus 94 l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsv 173 (281) ..+.+ ..-|+.++++.++.|+++.= ...-+.. +.... ...+......+++..+ -.+| + T Consensus 118 ~~~~~--------~~~l~~l~~~A~~~gv~l~~-E~~~~~~----~~~~~------~~~~~~~~~~~~~~~~-~~~g--~ 175 (284) T 3ju2_A 118 ARRMV--------VEGIAAVLPHARAAGVPLAI-EPLHPMY----AADRA------CVNTLGQALDICETLG-PGVG--V 175 (284) T ss_dssp HHHHH--------HHHHHHHHHHHHHHTCCEEE-CCCCGGG----TTTTB------SCCCHHHHHHHHHHHC-TTEE--E T ss_pred HHHHH--------HHHHHHHHHHHHHCCCEEEE-EECCCCC----CCCCC------CCCCHHHHHHHHHHCC-CCEE--E T ss_conf 99999--------99999999998743625898-6147644----44221------0155999999998418-8387--6 Q ss_pred EEECCEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCCEEEEEE-CCCCCCC--EEEECCCC----HHHHHHHHHCCCEE Q ss_conf 98197488962534217-99999997543123456677189993-4888753--12106627----99999999849909 Q gi|254780768|r 174 VSIGGRVVALEGIEGTD-SMLQRIVDCRNNGRILAGKSGVLVKM-CKSQQDM--RADLPSIG----AKTVQNVIKAGLAG 245 (281) Q Consensus 174 Vv~~g~ViaiEa~eGTD-~mi~R~~~~~~~~~~~~~~~~ilvK~-~K~~QD~--r~DlP~IG----~~Ti~~~~~ag~~g 245 (281) ...-+.+. .+|.+ ..+.+....... .-+-++- +.+..+. +..+|-=| ..-++.+.++|++| T Consensus 176 ~~D~~h~~----~~g~~~~~l~~~~~~~~~-------~hv~~~d~~~~~~~~~~~~~~pG~G~id~~~il~~L~~~Gy~G 244 (284) T 3ju2_A 176 AIDVYHVW----WDPDLANQIARAGKMKAI-------LAHHICDWLVPTKDMLTDRGMMGDGVIDLKGIRRRIEAAGFHG 244 (284) T ss_dssp EEEHHHHT----TCTTHHHHHHHHHHTTCE-------EEEEECBCCSSCCCSSSBCBCTTSSSCCHHHHHHHHHHTTCCC T ss_pred EECCHHHH----HCCCCHHHHHHHCCCCEE-------EEEEECCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCE T ss_conf 30424777----469979999984676649-------9999756666654555678689882058999999999809964 Q ss_pred EE-EEC---CCEEEECHHHHHHHHH Q ss_conf 99-973---9779985899999999 Q gi|254780768|r 246 IA-LEA---GKSLVLEKELVKKHAD 266 (281) Q Consensus 246 ia-iea---~~~lild~~~~i~~a~ 266 (281) -+ +|- ...--.+.+++++.+- T Consensus 245 ~isiE~f~~~~~~~~~~~e~~~~~~ 269 (284) T 3ju2_A 245 AQEVEIFSADNWWKRPADEVIATCV 269 (284) T ss_dssp CEEECCCBTTTGGGSCHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHH T ss_conf 8999847877443179999999999 No 123 >3dtt_A NADP oxidoreductase; YP_830112.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Probab=42.07 E-value=16 Score=15.76 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=28.5 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 399997798038999999997899789999548 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLN 35 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~ 35 (281) |||+| |.|..=..+|..+..+|+++.+..... T Consensus 21 kIaVI-G~G~mG~~lA~~La~aGh~V~v~~r~~ 52 (245) T 3dtt_A 21 KIAVL-GTGTVGRTMAGALADLGHEVTIGTRDP 52 (245) T ss_dssp EEEEE-CCSHHHHHHHHHHHHTTCEEEEEESCH T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCEEEEECCCH T ss_conf 89999-967999999999998799799983999 No 124 >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Probab=41.96 E-value=16 Score=15.75 Aligned_cols=152 Identities=9% Similarity=0.001 Sum_probs=79.0 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEE-EHHHHHHHHHHHHHCCCCEEEEECCCCCCC Q ss_conf 9739999779803899999999789978999954866731038856787-389999999999864954067702423210 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECREL-PLGDFCVLRSILHQYNIGRIVVAGAIDRRP 79 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~-~ig~ig~li~~Lk~~~i~~ivmaG~V~krP 79 (281) |-|||+| |-|..=.-+|+.+.++|+++++.....+....+.+....+. +..+ .... ++-++++ +.-.+ T Consensus 21 mmkIg~I-GlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~ga~~~~s~~e------~~~~--~d~vi~~--l~~~~ 89 (310) T 3doj_A 21 MMEVGFL-GLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAE------VIKK--CKYTIAM--LSDPC 89 (310) T ss_dssp SCEEEEE-CCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHH------HHHH--CSEEEEC--CSSHH T ss_pred CCEEEEE-CHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEECCCHHH------HHHC--CCCEEEE--CCCCC T ss_conf 6879787-1688999999999978993899869999999999869968289999------9845--8844984--05753 Q ss_pred CHHHHCCCHHHHHHH---HHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 001110260357899---99998751048035899999999976974821122252420354334554653234788998 Q gi|254780768|r 80 NVQDLCFSIKDSLRI---SKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILA 156 (281) Q Consensus 80 ~~~~l~~D~~~~~~l---~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~dI~~ 156 (281) .....-++..+.... -+++ -...-.+-..-+.+.+.++++|+..+++--.-..--+..|.++----. +..+.+. T Consensus 90 a~~~v~~~~~~~~~~~~~g~ii-id~sT~~p~~~~~~~~~~~~~g~~~ldaPVsGg~~~A~~G~l~~~vgG--~~~~~~~ 166 (310) T 3doj_A 90 AALSVVFDKGGVLEQICEGKGY-IDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAG--DKALFEE 166 (310) T ss_dssp HHHHHHHSTTCGGGGCCTTCEE-EECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEE--CHHHHHH T ss_pred CEEEEECCCHHHHHHCCCCCEE-EECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCEEECCC--CHHHHHH T ss_conf 0256301320155423589889-956876377789999999844976996337788688856982200479--8799998 Q ss_pred HHHHHHHHCC Q ss_conf 9999997332 Q gi|254780768|r 157 AMKSAEALSE 166 (281) Q Consensus 157 g~~i~~~l~~ 166 (281) ...+++.++. T Consensus 167 ~~~il~~~~~ 176 (310) T 3doj_A 167 SIPAFDVLGK 176 (310) T ss_dssp HHHHHHHHEE T ss_pred HHHHHHHHCC T ss_conf 7058785169 No 125 >1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, synthetic gene, isomerase; 1.60A {Candida albicans SC5314} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Probab=41.91 E-value=16 Score=15.74 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=41.7 Q ss_pred EEEEEECCCCCCCEEEECCCCHHHHHHHHHCCCE--EEEEE----CCCEEEECHHHHHHHHHHCCCEEEEECH Q ss_conf 1899934888753121066279999999984990--99997----3977998589999999987968999577 Q gi|254780768|r 211 GVLVKMCKSQQDMRADLPSIGAKTVQNVIKAGLA--GIALE----AGKSLVLEKELVKKHADEAGIFVCGIDR 277 (281) Q Consensus 211 ~ilvK~~K~~QD~r~DlP~IG~~Ti~~~~~ag~~--giaie----a~~~lild~~~~i~~a~~~~i~i~g~~~ 277 (281) -|+.-.++++==.+= +---.-++.++..||+. ++..| .++. .+.+++..++|++|+|-++.++. T Consensus 128 Hv~pl~a~~ggvl~R--~GHTEaavdL~~lAGl~P~avicEil~d~dG~-~~~~~~~~~fA~~~~l~~i~i~d 197 (204) T 1tks_A 128 HILPLRAVPGLLKKR--RGHTEAAVQLSTLAGLQPAGVICELVRDEDGL-MMRLDDCIQFGKKHGIKIININQ 197 (204) T ss_dssp EEEEEEECTTGGGTC--CCHHHHHHHHHHHTTSCSBEEEEEBBCTTTCC-BCBHHHHHHHHHHHTCCEEEHHH T ss_pred CCCCCEECCCCCCCC--CCHHHHHHHHHHHCCCCCEEEEEEEEECCCCC-CCCHHHHHHHHHHCCCCEEEHHH T ss_conf 867010245777567--88889999999983999619999997889988-65889999999984996998999 No 126 >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Probab=41.82 E-value=16 Score=15.73 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=69.1 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC-------CCC---CCCCEEEEEHHHHHHHHHHHHHCCCCEEEE Q ss_conf 7399997798038999999997899789999548667-------310---388567873899999999998649540677 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECS-------FDW---QDFECRELPLGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~-------~~~---~~~~~~~~~ig~ig~li~~Lk~~~i~~ivm 71 (281) =|+=|..|.|-+=..+++.+..+|+++++. +...+. ..+ +++++...++.+...+.+.++..+++.|+- T Consensus 1 MKILVtGatGfiGs~l~~~Ll~~g~~~vi~-id~~~~~~~~~~~~~~~~~~~~~~i~~Di~d~~~l~~~~~~~~~D~Vih 79 (361) T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVN-IDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361) T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEE-EECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEE-EECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEE T ss_conf 969998888689999999999789968999-8479864437778765206883799864789999999997579999998 Q ss_pred ECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--------CCEEECHHHCCH Q ss_conf 0242321000111026035789999998751048035899999999976--------974821122252 Q gi|254780768|r 72 AGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESY--------GVSVVGAHEIVP 132 (281) Q Consensus 72 aG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~--------G~~vi~~~~~l~ 132 (281) +.... .+..... | + . ..+...-.|-.+++.+..+..... -|-.++.....+ T Consensus 80 lAa~~-~~~~~~~--~--p----~-~~~~~Nv~gt~~l~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg 138 (361) T 1kew_A 80 LAAES-HVDRSIT--G--P----A-AFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYG 138 (361) T ss_dssp CCSCC-CHHHHHH--C--T----H-HHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGC T ss_pred CCCCC-CHHHHHH--C--H----H-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEC T ss_conf 96326-7556775--9--9----9-99999999999999999986343222036854999904633526 No 127 >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Parabacteroides distasonis} Probab=41.75 E-value=16 Score=15.73 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=24.1 Q ss_pred HHHHHHHHHCCCEEEEEECCCEEE-ECH----HHHHHHHHHCCC Q ss_conf 999999998499099997397799-858----999999998796 Q gi|254780768|r 232 AKTVQNVIKAGLAGIALEAGKSLV-LEK----ELVKKHADEAGI 270 (281) Q Consensus 232 ~~Ti~~~~~ag~~giaiea~~~li-ld~----~~~i~~a~~~~i 270 (281) .+-++.+.+.|++|..||....-. -|. .+.+++..++++ T Consensus 260 ~~i~~~L~~~gy~G~~ve~e~~~~~~d~~e~~~~s~~~L~~a~~ 303 (305) T 3obe_A 260 PNIFKKAYEIGILGYYVELEGDKKGRTQFEGVEKSAAYLQAAPF 303 (305) T ss_dssp HHHHHHHHHHTCCEEEECCCCCSSSCCHHHHHHHHHHHHHHCTT T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 99999999829987999995278889999999999999985899 No 128 >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} Probab=40.49 E-value=17 Score=15.60 Aligned_cols=117 Identities=15% Similarity=0.020 Sum_probs=59.8 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCC-CCEEE--EECCCCCCC Q ss_conf 399997798038999999997899789999548667310388567873899999999998649-54067--702423210 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYN-IGRIV--VAGAIDRRP 79 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~-i~~iv--maG~V~krP 79 (281) ||+|| |.|..-..++++++.+|+++..+.-. ...++.....+.+.........+...- -..++ .+|... -. T Consensus 8 ~I~iI-G~G~~g~~la~~l~~~G~~V~~~~~~----e~~~~adlvil~v~~~~~v~~~l~~~~~~~~~v~~~s~~~~-~~ 81 (232) T 3dfu_A 8 RVGIF-DDGSSTVNMAEKLDSVGHYVTVLHAP----EDIRDFELVVIDAHGVEGYVEKLSAFARRGQMFLHTSLTHG-IT 81 (232) T ss_dssp EEEEE-CCSCCCSCHHHHHHHTTCEEEECSSG----GGGGGCSEEEECSSCHHHHHHHHHTTCCTTCEEEECCSSCC-GG T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCEEEEECCH----HHCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCC-HH T ss_conf 89998-97889999999999789979996886----67036989999587039999998651578955885166420-89 Q ss_pred CHHHHCCC------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHH Q ss_conf 00111026------035789999998751048035899999999976974821122 Q gi|254780768|r 80 NVQDLCFS------IKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHE 129 (281) Q Consensus 80 ~~~~l~~D------~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~ 129 (281) .+..+... ..|. .... .....+|+.-+..+..+|+.-|-++.-.++ T Consensus 82 ~l~~~~~~g~~~~~~hP~---~~~~-~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~ 133 (232) T 3dfu_A 82 VMDPLETSGGIVMSAHPI---GQDR-WVASALDELGETIVGLLVGELGGSIVEIAD 133 (232) T ss_dssp GGHHHHHTTCEEEEEEEE---ETTE-EEEEESSHHHHHHHHHHHHHTTCEECCCCG T ss_pred HHHHHHCCCCCEEECCCC---CCCC-CCCCCCCHHHHHHHHHHHHHHCCEEEECCH T ss_conf 998875279815740677---5444-520136788999999999993997997088 No 129 >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Probab=40.06 E-value=17 Score=15.65 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=23.7 Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHCCCCEE Q ss_conf 97-399997798038999999997899789 Q gi|254780768|r 1 MK-RLLIIAGSGMLPYYVAKAARLKNDEPV 29 (281) Q Consensus 1 M~-kigIIAG~G~LP~~ia~~~~~~g~~~~ 29 (281) |+ =|||..|-|.==-.+++.+++.|++++ T Consensus 3 m~~IIgItG~igSGKStva~~l~~~G~~vi 32 (218) T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADLGINVI 32 (218) T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTCEEE T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCEE T ss_conf 776999879887879999999998799199 No 130 >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.2.1.2 Probab=39.35 E-value=17 Score=15.48 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=40.9 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 973999977980389999999978997899995486673103885678738999999999986495406770242 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) |+|+-|..|+|-+=..+++++...|+.+-++.+.-.......... ...+++..+...+ ...++.++.+=.+ T Consensus 5 ~KkILItGatG~iG~~lv~~L~~~~~~~~V~~~~R~~~~~~~~~~---~~~~d~~~~~~~~-~~~~d~vi~~~g~ 75 (215) T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLD---NPVGPLAELLPQL-DGSIDTAFCCLGT 75 (215) T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEE---CCBSCHHHHGGGC-CSCCSEEEECCCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC---CCCCCHHHHHHCC-CCCHHHHHHHHCC T ss_conf 998999899838999999999978695799997377200354201---2113213432103-3222232222100 No 131 >3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A* Probab=37.57 E-value=19 Score=15.30 Aligned_cols=168 Identities=11% Similarity=0.019 Sum_probs=91.6 Q ss_pred CCEEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCCCC----CCCCEEEEE---HHHHHHHHHHHHHC--CCCEEE Q ss_conf 9739999779-8038999999997899789999548667310----388567873---89999999999864--954067 Q gi|254780768|r 1 MKRLLIIAGS-GMLPYYVAKAARLKNDEPVIASVLNECSFDW----QDFECRELP---LGDFCVLRSILHQY--NIGRIV 70 (281) Q Consensus 1 M~kigIIAG~-G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~----~~~~~~~~~---ig~ig~li~~Lk~~--~i~~iv 70 (281) |+|..||-|. +-+=+.+++.+.+.|.+++++....+...+. .+......+ ..++..+++...++ .++-+| T Consensus 1 MnK~vlITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLV 80 (247) T 3dii_A 1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLV 80 (247) T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 99889996688889999999999879989999798899999997269869999206999999999999999809987999 Q ss_pred EECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHH Q ss_conf 70242321000111026035789999998751048035899999999976974821122252420354334554653234 Q gi|254780768|r 71 VAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDV 150 (281) Q Consensus 71 maG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~ 150 (281) -.-.+..+-.+.++..+ ...+.+ ...-.+--.+.+.+...+.+++=+++-........-. ++. +....+|.. T Consensus 81 nnAg~~~~~~~~~~~~e-----~~~~~~-~vNl~~~~~~~~~~~~~m~~~~G~II~isS~~~~~~~-~~~-~~Y~asKaa 152 (247) T 3dii_A 81 NNACRGSKGILSSLLYE-----EFDYIL-SVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSE-PDS-EAYASAKGG 152 (247) T ss_dssp ECCC-CCCCGGGTCCHH-----HHHHHH-HHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCC-TTC-HHHHHHHHH T ss_pred ECCCCCCCCCCCCCCHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCC-HHHHHHHHH T ss_conf 88967899880019999-----999999-9850999999999998635149459999434004689-995-779999999 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCEE Q ss_conf 788998999999733267225999819748 Q gi|254780768|r 151 KRDILAAMKSAEALSELDVGQSAVSIGGRV 180 (281) Q Consensus 151 ~~dI~~g~~i~~~l~~~DiGQsvVv~~g~V 180 (281) . ..+-..++.++++ +|-=- .|.=|.+ T Consensus 153 l--~~ltk~lA~ela~-~IrVN-~V~PG~i 178 (247) T 3dii_A 153 I--VALTHALAMSLGP-DVLVN-CIAPGWI 178 (247) T ss_dssp H--HHHHHHHHHHHTT-TSEEE-EEEECSB T ss_pred H--HHHHHHHHHHHCC-CCEEE-EEECCCC T ss_conf 9--9999999999789-99899-9966868 No 132 >3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Probab=37.50 E-value=19 Score=15.30 Aligned_cols=13 Identities=0% Similarity=0.186 Sum_probs=6.2 Q ss_pred HHHHHHHHHHCCC Q ss_conf 9999999986495 Q gi|254780768|r 54 FCVLRSILHQYNI 66 (281) Q Consensus 54 ig~li~~Lk~~~i 66 (281) +.+.++...+.|. T Consensus 78 l~~fl~la~e~GL 90 (612) T 3d3a_A 78 IAAFCRLAQENGM 90 (612) T ss_dssp HHHHHHHHHHTTC T ss_pred HHHHHHHHHHCCC T ss_conf 9999999998599 No 133 >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Probab=37.38 E-value=19 Score=15.28 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=28.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9739999779803899999999789978999954 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVL 34 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~ 34 (281) |+ |.|+.|+|.+=..+++.+..+|++++.+.-. T Consensus 1 Mk-IlV~GatG~iG~~l~~~L~~~G~~V~~~~R~ 33 (221) T 3ew7_A 1 MK-IGIIGATGRAGSRILEEAKNRGHEVTAIVRN 33 (221) T ss_dssp CE-EEEETTTSHHHHHHHHHHHHTTCEEEEEESC T ss_pred CE-EEEECCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 94-9999988189999999999786989999888 No 134 >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus} Probab=37.20 E-value=18 Score=15.47 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=27.0 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCC Q ss_conf 0480358999999999769748211222524203543 Q gi|254780768|r 103 SGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVG 139 (281) Q Consensus 103 ~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G 139 (281) .+|-.+==+.++++|++.|+.+++++.+..+++.+.+ T Consensus 81 TGgigSGKStva~~L~~~G~~vidaD~i~~~ly~~~~ 117 (281) T 2f6r_A 81 TGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGG 117 (281) T ss_dssp EECTTSCHHHHHHHHHHHTCEEEEHHHHHHHHTSTTS T ss_pred ECCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCCH T ss_conf 7887521999999999879969988999999983798 No 135 >2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein structure initiative, berkeley structural genomics center, BSGC, transferase; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B Probab=36.60 E-value=10 Score=17.08 Aligned_cols=74 Identities=11% Similarity=0.220 Sum_probs=45.7 Q ss_pred CCEEEEEECCCCH-------HHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9739999779803-------8999999997899789999548667310-3885678738999999999986495406770 Q gi|254780768|r 1 MKRLLIIAGSGML-------PYYVAKAARLKNDEPVIASVLNECSFDW-QDFECRELPLGDFCVLRSILHQYNIGRIVVA 72 (281) Q Consensus 1 M~kigIIAG~G~L-------P~~ia~~~~~~g~~~~ii~l~~~~~~~~-~~~~~~~~~ig~ig~li~~Lk~~~i~~ivma 72 (281) |+|+.+|--++-+ +..+|.++...|.++.++.. +...... +...........+.++++.|...++.++..+ T Consensus 5 mkk~l~ii~~~Py~~~~a~eal~~A~a~~a~~~~V~vff~-~dGV~~l~~~~~p~~~~~~~~~~~l~~l~~~~~~~l~vc 83 (136) T 2hy5_B 5 VKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFL-DDGVYQLTRGQDTKGIGMKNFSPTYRTLGDYEVRRIYVD 83 (136) T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEEC-GGGGGGGBSCCCCGGGTCCCCGGGGGGGGGGTCCEEEEE T ss_pred HCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE-CCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 2378999778999867899999999999847997799993-318888644679775566789999999986599679973 Q ss_pred CCC Q ss_conf 242 Q gi|254780768|r 73 GAI 75 (281) Q Consensus 73 G~V 75 (281) +.- T Consensus 84 ~~s 86 (136) T 2hy5_B 84 RDS 86 (136) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 136 >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ewa_A* 3ew9_A* 3etl_A* 2gdj_A* Probab=36.40 E-value=13 Score=16.40 Aligned_cols=13 Identities=0% Similarity=-0.261 Sum_probs=5.3 Q ss_pred CHHHHHHHHHHHC Q ss_conf 0389999999978 Q gi|254780768|r 12 MLPYYVAKAARLK 24 (281) Q Consensus 12 ~LP~~ia~~~~~~ 24 (281) .|-..++.++... T Consensus 113 ~lalq~a~~~~~~ 125 (322) T 2i1q_A 113 QIMHQSCVNLQNP 125 (322) T ss_dssp HHHHHHHHHTTCG T ss_pred HHHHHHHHHHHHC T ss_conf 9999999999740 No 137 >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Probab=36.17 E-value=20 Score=15.16 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=47.6 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC-------------CCC-CC-----CCCEEEE------------ Q ss_conf 9739999779803899999999789978999954866-------------731-03-----8856787------------ Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNEC-------------SFD-WQ-----DFECREL------------ 49 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~-------------~~~-~~-----~~~~~~~------------ 49 (281) |+|+ +|.|.|-+=..+++.+.++|++++.+.-.... +++ +. ...+... T Consensus 3 m~ki-LItGaG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~vv~~~~~~~~~~~~~ 81 (286) T 3gpi_A 3 LSKI-LIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVAASEYSDEHY 81 (286) T ss_dssp CCCE-EEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHHHHHC---- T ss_pred CCEE-EEECCCHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHH T ss_conf 7879-998945999999999997859899997870116067749990487878877543035416764102343200678 Q ss_pred ---EHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf ---389999999999864954067702423 Q gi|254780768|r 50 ---PLGDFCVLRSILHQYNIGRIVVAGAID 76 (281) Q Consensus 50 ---~ig~ig~li~~Lk~~~i~~ivmaG~V~ 76 (281) .+.....++...+..+++++|+++... T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~Ss~~ 111 (286) T 3gpi_A 82 RLSYVEGLRNTLSALEGAPLQHVFFVSSTG 111 (286) T ss_dssp -CCSHHHHHHHHHHTTTSCCCEEEEEEEGG T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 988999999999999857996464146652 No 138 >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Probab=35.39 E-value=20 Score=15.08 Aligned_cols=69 Identities=7% Similarity=0.044 Sum_probs=42.6 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC--CCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9739999779803899999999789978999954866731--03885678738999999999986495406770 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFD--WQDFECRELPLGDFCVLRSILHQYNIGRIVVA 72 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~--~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivma 72 (281) | ||-|..|+|-+=..+++.+..+|++++.+......... ....+....++.....++..+ .+++.|+-+ T Consensus 30 M-KILVTGatGfIGs~Lv~~L~~~g~~Vi~~d~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~--~~~D~Vihl 100 (379) T 2c5a_A 30 L-KISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVT--EGVDHVFNL 100 (379) T ss_dssp C-EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHH--TTCSEEEEC T ss_pred C-EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCEEEEECHHHHHHHHHH--CCCCEEEEC T ss_conf 9-7999899988999999999978398999968985321342366747991214289999886--189999997 No 139 >1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ... Probab=35.29 E-value=20 Score=15.06 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=106.5 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHC Q ss_conf 99999986495406770242321000111026035789999998751048035899999999976974821122252420 Q gi|254780768|r 56 VLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELL 135 (281) Q Consensus 56 ~li~~Lk~~~i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll 135 (281) ..+..+.+-|+..++|- -.++.+...++.- ....+..+.+.+++.|++++..+ ++++ T Consensus 37 d~~~~~~~lG~~~~~fH-----d~D~~P~~~~~~e---------------~~~~~~~ik~~l~~~Gl~~~~~T---~nlf 93 (386) T 1muw_A 37 ETVQRLAELGAHGVTFH-----DDDLIPFGSSDTE---------------RESHIKRFRQALDATGMTVPMAT---TNLF 93 (386) T ss_dssp HHHHHHHHHTCCEEEEE-----HHHHSCTTCCHHH---------------HHHHHHHHHHHHHHHTCBCCEEE---CCCS T ss_pred HHHHHHHHHCCCEEEEC-----CCCCCCCCCCHHH---------------HHHHHHHHHHHHHHCCCCCCEEC---CCCC T ss_conf 99999998199879737-----7756888998577---------------79999999999996398421303---5324 Q ss_pred CC----CCCCCCCCCCH--HHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHH------HH---HHHHHHHH Q ss_conf 35----43345546532--347889989999997332672259998197488962534217------99---99999754 Q gi|254780768|r 136 VQ----VGSLGTCVPNR--DVKRDILAAMKSAEALSELDVGQSAVSIGGRVVALEGIEGTD------SM---LQRIVDCR 200 (281) Q Consensus 136 ~~----~G~l~~~~p~~--~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD------~m---i~R~~~~~ 200 (281) .. .|-+|.+.|.- .....+..++.+++.+|.- .+|+-.|+-- -+....|| .+ ++.+.++. T Consensus 94 ~~p~~~~Ga~TspD~~vR~~Ai~~vk~aidiAa~LGa~----~vvlw~G~eG-~~~~~~~d~~~~~~~l~e~L~~v~dya 168 (386) T 1muw_A 94 THPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAK----TYVAWGGREG-AESGAAKDVRVALDRMKEAFDLLGEYV 168 (386) T ss_dssp SSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCS----EEEECCTTCE-ESSTTSCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC----EEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 68553578778959999999999999999999994998----4897389777-677665799999999999999999999 Q ss_pred HHCCCCCCCCEEEEEECCCCCCCE-EEECCCCHHHHHHHHHCCCE---EEEEECCCEEEE--CHHHHHHHHHHCCC Q ss_conf 312345667718999348887531-21066279999999984990---999973977998--58999999998796 Q gi|254780768|r 201 NNGRILAGKSGVLVKMCKSQQDMR-ADLPSIGAKTVQNVIKAGLA---GIALEAGKSLVL--EKELVKKHADEAGI 270 (281) Q Consensus 201 ~~~~~~~~~~~ilvK~~K~~QD~r-~DlP~IG~~Ti~~~~~ag~~---giaiea~~~lil--d~~~~i~~a~~~~i 270 (281) .. .+.+..+.==|||+.-+. ..+|+++ +++..+.+.|.. ++.++.+...+. +.+..++.|-.++. T Consensus 169 ~~----~g~~v~~~IEpkP~EP~~~~~~~t~~-~~l~~l~~~g~~~~vglnlD~gHa~~ag~~~~~~ia~a~~~gr 239 (386) T 1muw_A 169 TS----QGYDIRFAIEPKPNEPRGDILLPTVG-HALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGK 239 (386) T ss_dssp HH----HTCCCEEEECCCSSSSSSEESSCSHH-HHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTC T ss_pred HH----HCCCCEEEECCCCCCCCCCCCCCCHH-HHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCC T ss_conf 97----29994699613678876440048999-9999999809865434777536402047883699999885693 No 140 >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Probab=35.22 E-value=20 Score=15.06 Aligned_cols=97 Identities=10% Similarity=0.032 Sum_probs=51.1 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC--CCEEEEEHHHHHHHHHHHHHCC-----------C--C Q ss_conf 39999779803899999999789978999954866731038--8567873899999999998649-----------5--4 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQD--FECRELPLGDFCVLRSILHQYN-----------I--G 67 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~--~~~~~~~ig~ig~li~~Lk~~~-----------i--~ 67 (281) ||++| |.|-+=.-.|..+..+|++++.+....+....+++ .+...- .+.++++.-.+.+ + . T Consensus 4 kI~Vi-G~G~vGl~~a~~~a~~g~~V~g~D~~~~~i~~l~~g~~p~~E~---~l~~~l~~~~~~~~l~~t~~~~~~i~~~ 79 (450) T 3gg2_A 4 DIAVV-GIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEP---GLEKMIARNVKAGRLRFGTEIEQAVPEA 79 (450) T ss_dssp EEEEE-CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCST---THHHHHHHHHHTTSEEEESCHHHHGGGC T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCC---CHHHHHHHHHHCCCEEEECCHHHHHHHC T ss_conf 69998-9877899999999967991899989999999997798997898---9999999998649839987879987309 Q ss_pred EEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCC Q ss_conf 06770242321000111026035789999998751048 Q gi|254780768|r 68 RIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGG 105 (281) Q Consensus 68 ~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~g 105 (281) +++|+- |. .|.-.+..+|+.....+.+.+.....++ T Consensus 80 dii~ic-Vp-TP~~~~~~~d~~~~~~~~~~i~~~~~~~ 115 (450) T 3gg2_A 80 DIIFIA-VG-TPAGEDGSADMSYVLDAARSIGRAMSRY 115 (450) T ss_dssp SEEEEC-CC-CCBCTTSSBCCHHHHHHHHHHHHHCCSC T ss_pred CEEEEE-CC-CCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 999996-69-9975566898588875489999865778 No 141 >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Probab=35.17 E-value=16 Score=15.73 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=47.2 Q ss_pred HHHHHHHHHHCCCEEECHHH--------------------CCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 99999999976974821122--------------------2524203543345546532347889989999997332672 Q gi|254780768|r 110 LKASIDLLESYGVSVVGAHE--------------------IVPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDV 169 (281) Q Consensus 110 L~~i~~~fe~~G~~vi~~~~--------------------~l~~ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~Di 169 (281) .+.+.++-.+.|+++++++- ++|.....+|.++-.. +.=..+..++..+....+ T Consensus 120 ~~~l~~~A~~~girliGPNc~Gii~p~~~~ig~~~~~~~~i~p~~~~~~G~VgivS------qSG~l~~ei~~~~~~~g~ 193 (334) T 3mwd_B 120 TRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVS------RSGGMSNELNNIISRTTD 193 (334) T ss_dssp HHHHHHHHHHHTCEEECSSCCCEEETTTEECTTTTCSHHHHHHTTTTSCCSEEEEE------SCHHHHHHHHHHHHHHSS T ss_pred HHHHHHHHHHCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEE------CCCHHHHHHHHHHHHCCC T ss_conf 99999999865988899998511646654034404432444775547787479996------565289999999998299 Q ss_pred EEEEEEECCEEEEEECCCCHH--HHHHH Q ss_conf 259998197488962534217--99999 Q gi|254780768|r 170 GQSAVSIGGRVVALEGIEGTD--SMLQR 195 (281) Q Consensus 170 GQsvVv~~g~ViaiEa~eGTD--~mi~R 195 (281) |||.+|.-|- ++.-||| .+|+. T Consensus 194 G~S~~VsiGn----d~~~g~~~~D~L~~ 217 (334) T 3mwd_B 194 GVYEGVAIGG----DRYPGSTFMDHVLR 217 (334) T ss_dssp CEEEEEECCS----SSSCSSCHHHHHHH T ss_pred CEEEEEECCC----CCCCCCCHHHHHHH T ss_conf 8758980588----87568749999998 No 142 >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolidine carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis H37RV} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 2aqh_A* 2aqk_A* ... Probab=34.85 E-value=21 Score=15.02 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=38.3 Q ss_pred CEEEEEECC-CC--HHHHHHHHHHHCCCCEEEEEECCCCC-CCC----C-CCCEEEE---EHHHHHHHHHHHH Q ss_conf 739999779-80--38999999997899789999548667-310----3-8856787---3899999999998 Q gi|254780768|r 2 KRLLIIAGS-GM--LPYYVAKAARLKNDEPVIASVLNECS-FDW----Q-DFECREL---PLGDFCVLRSILH 62 (281) Q Consensus 2 ~kigIIAG~-G~--LP~~ia~~~~~~g~~~~ii~l~~~~~-~~~----~-~~~~~~~---~ig~ig~li~~Lk 62 (281) +|.+||.|. |. +=..+|+.+.+.|.++++........ ... . ....... +..++..+++.+. T Consensus 7 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vvi~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~ 79 (269) T 2h7i_A 7 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVT 79 (269) T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHH T ss_conf 8879998999997799999999998699999996883789999999708875089998622277999999998 No 143 >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, PSI, MCSG; 2.00A {Saccharomyces cerevisiae} Probab=33.54 E-value=21 Score=14.88 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=65.8 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCCCCC--CCC---CCCEE--EEE---HHHHHHHHHHHHHC--CCC Q ss_conf 973999977980-389999999978997899995486673--103---88567--873---89999999999864--954 Q gi|254780768|r 1 MKRLLIIAGSGM-LPYYVAKAARLKNDEPVIASVLNECSF--DWQ---DFECR--ELP---LGDFCVLRSILHQY--NIG 67 (281) Q Consensus 1 M~kigIIAG~G~-LP~~ia~~~~~~g~~~~ii~l~~~~~~--~~~---~~~~~--~~~---ig~ig~li~~Lk~~--~i~ 67 (281) |.|++||-|.+. +=..+++.+-+.|.+++++......+. .+. ...+. ..+ -.++..+++...++ .++ T Consensus 1 MGKv~lITGas~GIG~aia~~la~~Ga~v~v~~~~r~~~~l~~l~~~~~~~~~~~~~Dvt~~~~~~~~~~~~~~~~g~id 80 (254) T 3kzv_A 1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKID 80 (254) T ss_dssp -CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 99989994777599999999999779988999726999999999997099479998128999999999999999739977 Q ss_pred EEEE-ECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEE Q ss_conf 0677-024232100011102603578999999875104803589999999997697482 Q gi|254780768|r 68 RIVV-AGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVV 125 (281) Q Consensus 68 ~ivm-aG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi 125 (281) -+|- ||.......+.++..+ . ..+.+ ...-.+--.+.+.....+.+.+-.++ T Consensus 81 ilvnnAG~~~~~~~~~~~~~~--~---~~~~~-~vN~~~~~~~~~~~~p~m~~~~~~~i 133 (254) T 3kzv_A 81 SLVANAGVLEPVQNVNEIDVN--A---WKKLY-DINFFSIVSLVGIALPELKKTNGNVV 133 (254) T ss_dssp EEEEECCCCCCCTTTTSCCHH--H---HHHHH-HHHTHHHHHHHHHHHHHHHHHTCEEE T ss_pred EEEEECCCCCCCCCHHHCCHH--H---HHHHH-HHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 446613347888885767777--6---55787-75029999999999999998399469 No 144 >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} Probab=33.48 E-value=22 Score=14.87 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=26.4 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 7399997798038999999997899789999548 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLN 35 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~ 35 (281) .|+++| |+|.--.++++.+.++|+++.+..+.+ T Consensus 6 ~kiaVi-Ggd~r~~~~~~~L~~~G~~V~v~~~~~ 38 (293) T 3d4o_A 6 KHVVII-GGDARQLEIIRKLSTFDAKISLVGFDQ 38 (293) T ss_dssp CEEEEE-CBCHHHHHHHHHHHHTTCEEEEESCTT T ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 889998-988799999999997899599996672 No 145 >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Probab=33.42 E-value=22 Score=14.87 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=46.1 Q ss_pred EEEEECCCCHHH---HHHHHHHHCCCCEEEEEECCCCC---CCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 999977980389---99999997899789999548667---310388567873899999999998649540677024 Q gi|254780768|r 4 LLIIAGSGMLPY---YVAKAARLKNDEPVIASVLNECS---FDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGA 74 (281) Q Consensus 4 igIIAG~G~LP~---~ia~~~~~~g~~~~ii~l~~~~~---~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~ 74 (281) +=++-|.+.-.. .+++.+..+|+.++.+..+|+.- .....+.. .--..++...+++|+..+..++.++|. T Consensus 38 vvl~hG~~~~~~~~~~la~~L~~~Gy~V~~~D~rGh~G~S~g~~~~~~~-~~~~~d~~~vi~~l~~~~~~~i~l~G~ 113 (305) T 1tht_A 38 ILIASGFARRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTM-TTGKNSLCTVYHWLQTKGTQNIGLIAA 113 (305) T ss_dssp EEEECTTCGGGGGGHHHHHHHHTTTCCEEEECCCBCC--------CCCH-HHHHHHHHHHHHHHHHTTCCCEEEEEE T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 9998897778789999999999789989997079999888885643330-156899999998741269854999984 No 146 >2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Probab=33.24 E-value=22 Score=14.85 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=29.0 Q ss_pred HHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEE Q ss_conf 99999984990999973977998589999999987968999 Q gi|254780768|r 234 TVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274 (281) Q Consensus 234 Ti~~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~g 274 (281) -++.++++|++.|=+... .+.+.+.++||++||.+|- T Consensus 379 ~l~~~k~~g~N~iR~~g~----~e~~~fydlcDe~GilV~~ 415 (1032) T 2vzs_A 379 KLKYVLNLGLNTVRLEGH----IEPDEFFDIADDLGVLTMP 415 (1032) T ss_dssp HHHHHHHTTCCEEEEESC----CCCHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHCCCEEECCCC----CCCHHHHHHHHHCCCEEEE T ss_conf 999998717307971688----9999999999876999996 No 147 >2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis} Probab=33.10 E-value=22 Score=14.83 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=44.9 Q ss_pred CEEEEE-ECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 739999-77980389999999978997899995486673103885678738999999999986495406770242 Q gi|254780768|r 2 KRLLII-AGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 2 ~kigII-AG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) ..||++ +|-|-|.+ ++++++.--+.-++.+.+.+...+.+.....+ ..-.-.+.++|.+.+|+-+|+|=.= T Consensus 8 ~pIgvfDSGiGGLtv--l~~l~~~lP~~~~iY~~D~a~~PYG~ks~eei-~~~~~~~~~~L~~~~~~~IVIACNT 79 (276) T 2dwu_A 8 SVIGVLDSGVGGLTV--ASEIIRQLPKESICYIGDNERCPYGPRSVEEV-QSFVFEMVEFLKQFPLKALVVACNT 79 (276) T ss_dssp CEEEEEESSSTTHHH--HHHHHHHCTTSCEEEEECGGGCCCTTSCHHHH-HHHHHHHHHHHTTSCEEEEEECCHH T ss_pred CCEEEEECCCCHHHH--HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 948999689767999--99999978999989996389999899999999-9999999999985799999992671 No 148 >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, lyase; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Probab=33.04 E-value=22 Score=14.83 Aligned_cols=75 Identities=15% Similarity=0.052 Sum_probs=51.3 Q ss_pred CEEEEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCC-C-C------------CCCCCCEEEEEHHHHHHHHHHHHHCCC Q ss_conf 73999977-9803899999999789978999954866-7-3------------103885678738999999999986495 Q gi|254780768|r 2 KRLLIIAG-SGMLPYYVAKAARLKNDEPVIASVLNEC-S-F------------DWQDFECRELPLGDFCVLRSILHQYNI 66 (281) Q Consensus 2 ~kigIIAG-~G~LP~~ia~~~~~~g~~~~ii~l~~~~-~-~------------~~~~~~~~~~~ig~ig~li~~Lk~~~i 66 (281) +|++||-| +|-+=..+++.+.++|++++.+.-...+ + . ....+.....++.+...+-..++..++ T Consensus 28 kK~~LVTGatGfIGs~L~~~Ll~~gy~V~g~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 107 (381) T 1n7h_A 28 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 107 (381) T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC T ss_conf 99899925662899999999997859899997888655513266643243341567548998406898999999985599 Q ss_pred CEEEEECCCC Q ss_conf 4067702423 Q gi|254780768|r 67 GRIVVAGAID 76 (281) Q Consensus 67 ~~ivmaG~V~ 76 (281) +.|+.+.... T Consensus 108 d~Vih~Aa~~ 117 (381) T 1n7h_A 108 DEVYNLAAQS 117 (381) T ss_dssp SEEEECCSCC T ss_pred EEEEECCCCC T ss_conf 4999722004 No 149 >3gm8_A Glycoside hydrolase family 2, candidate beta- glycosidase; structural genomics, PSI-2, protein structure initiative; 2.40A {Bacteroides vulgatus atcc 8482} Probab=32.65 E-value=22 Score=14.79 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=22.6 Q ss_pred HHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEE Q ss_conf 9999984990999973977998589999999987968999 Q gi|254780768|r 235 VQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274 (281) Q Consensus 235 i~~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~g 274 (281) ++.++++|++.|=+..+. ..+.+.++||++||.+|- T Consensus 313 l~l~k~~g~N~iR~~h~p----~~~~f~d~cDelGilV~~ 348 (801) T 3gm8_A 313 LKLLKDMGCNAIRTSHNP----FSPAFYNLCDTMGIMVLN 348 (801) T ss_dssp HHHHHHTTCCEEEETTSC----CCHHHHHHHHHHTCEEEE T ss_pred HHHHHHCCCCEEECCCCC----CCHHHHHHHHHCCEEEEE T ss_conf 999975588789845699----989999977657939998 No 150 >3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822} Probab=32.55 E-value=22 Score=14.77 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHH Q ss_conf 35899999999976974821122252420354334554653234788 Q gi|254780768|r 107 AAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRD 153 (281) Q Consensus 107 d~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~d 153 (281) +.||.+-...|.++||.=++.+++....=.+.|.+...=|++++.-. T Consensus 17 ~~Il~aa~~lf~e~G~~~~t~~~Ia~~agvs~~tlY~~F~~K~~L~~ 63 (203) T 3ccy_A 17 DTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLR 63 (203) T ss_dssp HHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHCCCCHHHHHH T ss_conf 99999999999984945278999999858986773024899999999 No 151 >2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3 Probab=32.27 E-value=22 Score=14.84 Aligned_cols=160 Identities=11% Similarity=0.078 Sum_probs=70.0 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHH Q ss_conf 99999999864954067702423210001110260357899999987510480358999999999769748211222524 Q gi|254780768|r 54 FCVLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPE 133 (281) Q Consensus 54 ig~li~~Lk~~~i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ 133 (281) ..+++..|++++++--.|+-+- + +. . .-. +++.+.++|.+ ++.|.+--. T Consensus 19 ~~~il~~L~~~~i~aTFFv~g~--~--~~-----------------~-----~p~----~~~~~~~~Ghe-Ig~Hs~~H~ 67 (195) T 2cc0_A 19 TQSLLNALRQNGLRATMFNQGQ--Y--AA-----------------Q-----NPS----LVRAQVDAGMW-VANHSYTHP 67 (195) T ss_dssp HHHHHHHHHHTTCCCEEEECHH--H--HH-----------------H-----CHH----HHHHHHHTTCE-EEECCSSCC T ss_pred HHHHHHHHHHCCCCEEEEEECH--H--HH-----------------H-----CHH----HHHHHHHCCCE-EECCCCCCC T ss_conf 9999999998798189999783--3--56-----------------6-----999----99999976988-420003471 Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEE Q ss_conf 20354334554653234788998999999733267225999819748896253421799999997543123456677189 Q gi|254780768|r 134 LLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGRVVALEGIEGTDSMLQRIVDCRNNGRILAGKSGVL 213 (281) Q Consensus 134 ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD~mi~R~~~~~~~~~~~~~~~~il 213 (281) .+.. .+.++...+|....+.++++..-. -....-=.-.-++.+++-+.++ |- .. T Consensus 68 ------~~~~-l~~~~~~~ei~~~~~~l~~~~G~~---------~~~fr~P~g~~~~~~~~~l~~~---G~-------~~ 121 (195) T 2cc0_A 68 ------HMTQ-LGQAQMDSEISRTQQAIAGAGGGT---------PKLFRPPYGETNATLRSVEAKY---GL-------TE 121 (195) T ss_dssp ------CGGG-SCHHHHHHHHHHHHHHHHHTTSCC---------CSEECCGGGCCCHHHHHHHHHT---TC-------EE T ss_pred ------CHHH-HHHHHHHHHHHHHHHHHHHHHCCC---------CCEEECCCCCCCHHHHHHHHHC---CC-------EE T ss_conf ------5766-538999999999999999975998---------7438789888899999999987---99-------79 Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCEEEE-C--------HHHHHHHHHHCCCEEEEECHHHC Q ss_conf 9934888753121066279999999984990999973977998-5--------89999999987968999577545 Q gi|254780768|r 214 VKMCKSQQDMRADLPSIGAKTVQNVIKAGLAGIALEAGKSLVL-E--------KELVKKHADEAGIFVCGIDREFA 280 (281) Q Consensus 214 vK~~K~~QD~r~DlP~IG~~Ti~~~~~ag~~giaiea~~~lil-d--------~~~~i~~a~~~~i~i~g~~~~~~ 280 (281) +=-.---.|.+ .-.++.+......- ..|.++++ | .+.+++.+.+.|.-++.++++.+ T Consensus 122 v~w~~~~~D~~----~~~~~~i~~~~~~~------~~G~IiL~Hd~~~~t~~~L~~ii~~l~~~Gy~fvtl~e~~~ 187 (195) T 2cc0_A 122 VIWDVDSQDWN----NASTDAIVQAVSRL------GNGQVILMHDWPANTLAAIPRIAQTLAGKGLCSGMISPQTG 187 (195) T ss_dssp CCCSEECCGGG----TCCHHHHHHHHHTC------CTTCEEEEESSCHHHHHHHHHHHHHHHHTTEEECEECTTTS T ss_pred EEECCCHHHHC----CCCHHHHHHHHHCC------CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCC T ss_conf 98160101102----10289999998465------98928997399724999999999999987999997155669 No 152 >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Probab=31.72 E-value=23 Score=14.68 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=27.7 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 739999779803899999999789978999954 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVL 34 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~ 34 (281) +||-|..|+|-+=..+++.+..+|+.++++.-. T Consensus 4 KkIlITG~tGfiG~~l~~~L~~~g~~v~~~~~~ 36 (321) T 1e6u_A 4 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR 36 (321) T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCC T ss_conf 869998487489999999999784989996571 No 153 >3cny_A Inositol catabolism protein IOLE; NP_786806.1, xylose isomerase-like TIM barrel, structural genomics; 1.85A {Lactobacillus plantarum WCFS1} Probab=31.65 E-value=23 Score=14.68 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=14.5 Q ss_pred HHHHHHHHHCCCEEE-EEECC Q ss_conf 999999998499099-99739 Q gi|254780768|r 232 AKTVQNVIKAGLAGI-ALEAG 251 (281) Q Consensus 232 ~~Ti~~~~~ag~~gi-aiea~ 251 (281) .+-++.+.+.|++|- .||.. T Consensus 255 ~~i~~~L~~~gy~G~~svE~e 275 (301) T 3cny_A 255 KPVYDKLIANNYKGWIVVEAE 275 (301) T ss_dssp HHHHHHHHHTTCCEEEEECCC T ss_pred HHHHHHHHHCCCCEEEEEEEE T ss_conf 999999998099779999986 No 154 >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} Probab=31.48 E-value=23 Score=14.66 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=21.0 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 9739999779803899999999789978999 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIA 31 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii 31 (281) |+|+|||...|..-..-+++++..+...+.+ T Consensus 3 Mk~~~iIG~~G~ig~~H~~a~~~~~~~~v~~ 33 (318) T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSA 33 (318) T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEE T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 3199999699889999999997289948999 No 155 >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, structural genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 Probab=31.39 E-value=23 Score=14.65 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=29.0 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 97399997798038999999997899789999 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIAS 32 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~ 32 (281) ++||-|..|.|-+=..+++.+.++|++++.+. T Consensus 27 kKKIlITGg~GfIG~~lv~~L~~~g~~V~~~d 58 (343) T 2b69_A 27 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVD 58 (343) T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 98899977880899999999997869899996 No 156 >3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthase, two rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* Probab=31.33 E-value=23 Score=14.64 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=23.5 Q ss_pred CCEEEEEE---------CCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 97399997---------798038999999997899789999 Q gi|254780768|r 1 MKRLLIIA---------GSGMLPYYVAKAARLKNDEPVIAS 32 (281) Q Consensus 1 M~kigIIA---------G~G~LP~~ia~~~~~~g~~~~ii~ 32 (281) | ||++|+ |.|..-..+|+++.+.|+++.++. T Consensus 3 M-kIl~~~~~~~P~~~GG~~~~~~~La~~L~~~Gh~V~vvt 42 (439) T 3fro_A 3 M-KVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 42 (439) T ss_dssp C-EEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEE T ss_pred E-EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 0-999988867985678799999999999997699899991 No 157 >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Probab=31.23 E-value=23 Score=14.63 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=11.3 Q ss_pred CCHHHHHHHHHHHHHCCCEE Q ss_conf 80358999999999769748 Q gi|254780768|r 105 GNAAILKASIDLLESYGVSV 124 (281) Q Consensus 105 gDd~iL~~i~~~fe~~G~~v 124 (281) +-..+-.+|++-+++.|.++ T Consensus 264 nT~~~a~~ia~~~~~~g~~v 283 (398) T 1ycg_A 264 STEKMAHALMDGLVAGGCEV 283 (398) T ss_dssp HHHHHHHHHHHHHHHTTCEE T ss_pred HHHHHHHHHHHHHHHCCCEE T ss_conf 49999999998875279679 No 158 >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Probab=31.03 E-value=24 Score=14.61 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=66.4 Q ss_pred CEEEEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEE---HHHHHHHHHHHHHC--CCCEEEEECCC Q ss_conf 73999977-98038999999997899789999548667310388567873---89999999999864--95406770242 Q gi|254780768|r 2 KRLLIIAG-SGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELP---LGDFCVLRSILHQY--NIGRIVVAGAI 75 (281) Q Consensus 2 ~kigIIAG-~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~---ig~ig~li~~Lk~~--~i~~ivmaG~V 75 (281) +|.++|-| ++-+=..+++.+-++|.++++......... .......+ -.++..+++...++ .++-+|-.-.+ T Consensus 8 gKvalITG~s~GIG~aia~~la~~Ga~Vv~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnAG~ 84 (264) T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEA---KYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGI 84 (264) T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSC---SSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC---CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 998999389868999999999987999999848975568---84299982799999999999999983999799989988 Q ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCEEECHHHCC Q ss_conf 321000111026035789999998751048035899999999976-97482112225 Q gi|254780768|r 76 DRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESY-GVSVVGAHEIV 131 (281) Q Consensus 76 ~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~-G~~vi~~~~~l 131 (281) ...-.+.++-.+ ...+.+ ...-.|--.+.+.....+.++ +=+++...... T Consensus 85 ~~~~~~~~~~~e-----~~~~~~-~vNl~g~~~~~~~~~~~m~~~~~G~IVnisS~~ 135 (264) T 2dtx_A 85 ESYGKIESMSMG-----EWRRII-DVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQ 135 (264) T ss_dssp CCCBCTTTSCHH-----HHHHHH-HHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGG T ss_pred CCCCCHHHCCHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHH T ss_conf 999990559999-----999999-997476999999999877663696399992420 No 159 >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate biosynthesis, PSI-2; 1.90A {Methylococcus capsulatus} Probab=30.90 E-value=24 Score=14.60 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=26.0 Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 97-399997798038999999997899789999 Q gi|254780768|r 1 MK-RLLIIAGSGMLPYYVAKAARLKNDEPVIAS 32 (281) Q Consensus 1 M~-kigIIAG~G~LP~~ia~~~~~~g~~~~ii~ 32 (281) |+ ||+ |-|.|..=.++|-.+.++|+++.++. T Consensus 1 m~MkI~-IiGaGaiG~~~a~~L~~aG~~Vtlv~ 32 (320) T 3i83_A 1 MSLNIL-VIGTGAIGSFYGALLAKTGHCVSVVS 32 (320) T ss_dssp --CEEE-EESCCHHHHHHHHHHHHTTCEEEEEC T ss_pred CCCEEE-EECCCHHHHHHHHHHHHCCCCEEEEE T ss_conf 988899-99968999999999984899179997 No 160 >1vkm_A Conserved hypothetical protein TM1464; conserved hypothetical protein possibly involved in carbohydrate metabolism, structural genomics; HET: MSE UNL; 1.90A {Thermotoga maritima MSB8} SCOP: c.138.1.1 Probab=29.90 E-value=24 Score=14.61 Aligned_cols=148 Identities=14% Similarity=0.234 Sum_probs=69.2 Q ss_pred HHHHHHHHCCCCEEEEEECCCC------CCCCC---CCCEEEEEHHHHH--------------HHHHHHHHCCCCEEEE- Q ss_conf 9999999789978999954866------73103---8856787389999--------------9999998649540677- Q gi|254780768|r 16 YVAKAARLKNDEPVIASVLNEC------SFDWQ---DFECRELPLGDFC--------------VLRSILHQYNIGRIVV- 71 (281) Q Consensus 16 ~ia~~~~~~g~~~~ii~l~~~~------~~~~~---~~~~~~~~ig~ig--------------~li~~Lk~~~i~~ivm- 71 (281) .+-+.++.+|--|-.+++.+.. +.+++ +....-++-.+++ ..+..-+..||+=.+= T Consensus 48 ~~e~~vr~~GavPATiaii~G~i~vGl~~~el~~la~~~~~Kvs~RDl~~~~a~~~~GaTTVsaTm~iA~~aGI~VFaTG 127 (297) T 1vkm_A 48 RAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTG 127 (297) T ss_dssp HHHHHHHHHTCEEEEEEEETTEEEESCCHHHHHHHHHHCCEEECGGGHHHHHHHTCCEEECHHHHHHHHHHHTCCEEECS T ss_pred HHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEC T ss_conf 99999997798010699998986878899999998516430003046899970787772139999999997798199867 Q ss_pred -ECCCCCCCCHHHHCCCHHHHHHHHHHHHHH----HCCCCHHH--HHHHHHHHHHCCCEEECHH-HCCHHHCCCCCCCCC Q ss_conf -024232100011102603578999999875----10480358--9999999997697482112-225242035433455 Q gi|254780768|r 72 -AGAIDRRPNVQDLCFSIKDSLRISKMIWQL----VSGGNAAI--LKASIDLLESYGVSVVGAH-EIVPELLVQVGSLGT 143 (281) Q Consensus 72 -aG~V~krP~~~~l~~D~~~~~~l~k~l~~~----~~~gDd~i--L~~i~~~fe~~G~~vi~~~-~~l~~ll~~~G~l~~ 143 (281) +|+|. |- -+|...|+.. |.+. ---|--++ +..-.+++|..|+.|++.+ +.+|-++....-+.- T Consensus 128 GIGGVH-r~-----t~DiSaDL~e---L~~tpv~VVcaG~KsiLDi~~TlE~LET~GV~Vvgy~td~fPaFy~~~Sg~~~ 198 (297) T 1vkm_A 128 GTGGVH-PG-----RVDVSQDLTE---MSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRV 198 (297) T ss_dssp CBCCBC-TT-----SSCBCHHHHH---HTTCCEEEEESBBCTTSCHHHHHHHHHHTTCCEEEESCSBCCBTTBSCCSCBC T ss_pred CCCCCC-CC-----CCCCCCCHHH---HHCCCEEEEECCCHHHCCCHHHHHHHHHCCEEEEEECCCCCCCEEECCCCCCC T ss_conf 867656-89-----8540200899---83398179940635440547789998736637996268875514407899858 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC Q ss_conf 4653234788998999999733267225999819 Q gi|254780768|r 144 CVPNRDVKRDILAAMKSAEALSELDVGQSAVSIG 177 (281) Q Consensus 144 ~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~ 177 (281) |. ..|.+-..++.+.-..+....+++|.| T Consensus 199 --~~---v~~~~eiA~i~~a~~~lgl~~g~Lv~n 227 (297) T 1vkm_A 199 --PR---IENVEEVLKIYESMKEMELEKTLMVLN 227 (297) T ss_dssp --CE---ECSHHHHHHHHHHHHHTTCCSEEEEEC T ss_pred --CC---CCCHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf --87---499999999999999819986399978 No 161 >2f5v_A Pyranose 2-oxidase; flavoprotein, rossmann-fold, PHBH-fold, GMC oxidoreductase, glutathion-reductase related fold, tetramer; HET: KBG FAD PG4; 1.41A {Peniophora SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1tzl_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2f6c_A* 3k4m_A* 3bg7_A* 2igm_A* 3k4j_A* 2ign_A* 2igo_A* 3lsm_A* 3k4k_A* 3k4l_A* 3bly_A* 3k4c_A* ... Probab=29.82 E-value=25 Score=14.48 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.6 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 9997798038999999997899789999 Q gi|254780768|r 5 LIIAGSGMLPYYVAKAARLKNDEPVIAS 32 (281) Q Consensus 5 gIIAG~G~LP~~ia~~~~~~g~~~~ii~ 32 (281) -||-|+|.==..+|..+..+|.++.++- T Consensus 21 ~IIVGsG~aG~v~A~rLae~g~~VLvLE 48 (595) T 2f5v_A 21 VVIVGSGPIGCTYARELVGAGYKVAMFD 48 (595) T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEEC T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 8998966899999999973889799995 No 162 >3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isoprenoid biosynthesis; 1.90A {Ehrlichia chaffeensis} Probab=29.71 E-value=25 Score=14.46 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=89.3 Q ss_pred CEEE-EEECCCCH----H---HHHHHHHHHCCCCEEEEEECCCCCCCCCCCC---EEEE-EH-HHHHHH-------HHHH Q ss_conf 7399-99779803----8---9999999978997899995486673103885---6787-38-999999-------9999 Q gi|254780768|r 2 KRLL-IIAGSGML----P---YYVAKAARLKNDEPVIASVLNECSFDWQDFE---CREL-PL-GDFCVL-------RSIL 61 (281) Q Consensus 2 ~kig-IIAG~G~L----P---~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~---~~~~-~i-g~ig~l-------i~~L 61 (281) -++| |++|-|.+ + ......++++|.++.+++.......-..-+. ..+- ++ ..-.++ ++.+ T Consensus 24 m~~aviLsGcG~~DGsEi~Eav~~l~~L~raG~~v~~~aPd~~q~~vv~H~~g~~~~~~Rnvl~esariarg~i~~l~ev 103 (242) T 3l3b_A 24 LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQI 103 (242) T ss_dssp CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGC T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC T ss_conf 44699980897867422979999999999889979999469875512561588713245542114553246787857788 Q ss_pred HHCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHC Q ss_conf 8649540677024232100011102603578999999875------1048035899999999976974821122252420 Q gi|254780768|r 62 HQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQL------VSGGNAAILKASIDLLESYGVSVVGAHEIVPELL 135 (281) Q Consensus 62 k~~~i~~ivmaG~V~krP~~~~l~~D~~~~~~l~k~l~~~------~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll 135 (281) +...-+=+++-|+.. ..+.|... .-+.|..+.+.+.++.++. +.+++-=..|-++ T Consensus 104 ~~~dyDaliiPGG~g-----------------~a~nL~~~~~~~~~~~~~~~~v~~li~~f~~~~--KpiaaIC~aP~ll 164 (242) T 3l3b_A 104 RVEEFDMLVIPGGYG-----------------VAKNFSNLFDEDKENDYILPEFKNAVREFYNAK--KPIGAVCISPAVV 164 (242) T ss_dssp CGGGCSEEEECCCHH-----------------HHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTT--CCEEEETTHHHHH T ss_pred CCCCCCEEEECCCHH-----------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHH T ss_conf 941289899889767-----------------887777766518314102389999999999879--9799987769999 Q ss_pred CCC-CCCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCEEEEEEECCEEEEE----------ECCCCHHHHHHHHHHHH Q ss_conf 354-334554653234788998999999733----267225999819748896----------25342179999999754 Q gi|254780768|r 136 VQV-GSLGTCVPNRDVKRDILAAMKSAEALS----ELDVGQSAVSIGGRVVAL----------EGIEGTDSMLQRIVDCR 200 (281) Q Consensus 136 ~~~-G~l~~~~p~~~~~~dI~~g~~i~~~l~----~~DiGQsvVv~~g~Viai----------Ea~eGTD~mi~R~~~~~ 200 (281) +.. |.+.+++.+... +.+ +.+++.| ..++.+.||.+.++++.- |..+|-++|++.+.++. T Consensus 165 a~~~g~l~g~~~T~~~--~~~---~~l~~~Ga~~v~~~v~~vVVD~~~kIVTtPAym~a~~i~ev~~GI~klV~~vl~l~ 239 (242) T 3l3b_A 165 VALLKDIAKVKVTIGE--DSN---GLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMRNDSLYNVYLGIQDMISSMVNYL 239 (242) T ss_dssp HHHHTTTCCCEECCCC---------CHHHHTCEECCCCTTCCEEETTTTEEEECGGGSCCCHHHHHHHHHHHHHHHHHHC T ss_pred HHHHCCCCCCEEECCC--CHH---HHHHHCCCCEEECCCCEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9983754686287797--869---99998699389268776999789968938650258699999999999999999986 Q ss_pred H Q ss_conf 3 Q gi|254780768|r 201 N 201 (281) Q Consensus 201 ~ 201 (281) + T Consensus 240 ~ 240 (242) T 3l3b_A 240 K 240 (242) T ss_dssp - T ss_pred H T ss_conf 1 No 163 >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Probab=29.08 E-value=25 Score=14.39 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=38.8 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCC----CCCCCCEEEEEHHHHHHHHHHHHH Q ss_conf 973999977980389999999978997899995486673----103885678738999999999986 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSF----DWQDFECRELPLGDFCVLRSILHQ 63 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~----~~~~~~~~~~~ig~ig~li~~Lk~ 63 (281) ++|+.++ |.|..-..+++.+...++++.+.....+.-. .+.+.....+++.+...+.+.++. T Consensus 3 ~k~v~v~-GaG~~g~~~~~~L~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~ 68 (450) T 1ff9_A 3 TKSVLML-GSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAK 68 (450) T ss_dssp CCEEEEE-CCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTT T ss_pred CCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCC T ss_conf 8879998-88799999999998396969999799999999997589985499617999999998718 No 164 >3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} Probab=28.84 E-value=26 Score=14.37 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=19.1 Q ss_pred EHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 38999999999986495406770242 Q gi|254780768|r 50 PLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 50 ~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) ...++..-+..|+.-||+.++....+ T Consensus 89 ~~~~~~~~i~~l~~lGv~~ii~tnav 114 (285) T 3khs_A 89 TAARATFPMRVFKALGVKIVVLTNAA 114 (285) T ss_dssp CHHHHTHHHHHHHHTTCCEEEEEEEE T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 87887899999998599699980352 No 165 >1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics, JCSG, protein structure initiative, PSI; HET: GUN; 2.01A {Thermotoga maritima MSB8} SCOP: c.56.2.1 Probab=28.68 E-value=26 Score=14.35 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=21.9 Q ss_pred EEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 738999999999986495406770242 Q gi|254780768|r 49 LPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 49 ~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) .+..++-.-+..|+.-||+.++....+ T Consensus 98 ~~~~~v~~~i~~l~~lGv~~ii~tnAv 124 (277) T 1vmk_A 98 HDPATVAFPVYLAKYVGVKGVVVTNAA 124 (277) T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEEEEE T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 898998799999997699689983350 No 166 >1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1 Probab=28.57 E-value=26 Score=14.33 Aligned_cols=78 Identities=12% Similarity=0.099 Sum_probs=45.0 Q ss_pred CCEEEEEECCCCH-------HHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9739999779803-------899999999789--9789999548667310388567873899999999998649540677 Q gi|254780768|r 1 MKRLLIIAGSGML-------PYYVAKAARLKN--DEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 1 M~kigIIAG~G~L-------P~~ia~~~~~~g--~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivm 71 (281) |+|+.+|.-+|-+ -..++.++..++ .++.++...+....-.++.... ....+..+++.|...|++ +.- T Consensus 1 M~k~~ii~~~~P~~~~~~~~al~~a~a~~a~~~~~~V~vff~~dGV~~~~~~~~~~--~~~~~~~~l~~l~~~gv~-~~v 77 (117) T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPG--EGYNIQQMLEILTAQNVP-VKL 77 (117) T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGGBSCCCCS--SSCCHHHHHHHHHHTTCC-EEE T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCCCC--CCHHHHHHHHHHHHCCCE-EEE T ss_conf 95799999479988278999999999998547898589999732578764467876--304199999999986988-998 Q ss_pred ECCCCCCCCH Q ss_conf 0242321000 Q gi|254780768|r 72 AGAIDRRPNV 81 (281) Q Consensus 72 aG~V~krP~~ 81 (281) ++.=.++..+ T Consensus 78 C~~~~~~rGi 87 (117) T 1jx7_A 78 CKTCTDGRGI 87 (117) T ss_dssp EHHHHHHTTC T ss_pred EHHHHHHCCC T ss_conf 7899987299 No 167 >3c85_A Putative glutathione-regulated potassium-efflux system protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Probab=28.48 E-value=26 Score=14.32 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=19.3 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCE-EEEEE Q ss_conf 999779803899999999789978-99995 Q gi|254780768|r 5 LIIAGSGMLPYYVAKAARLKNDEP-VIASV 33 (281) Q Consensus 5 gIIAG~G~LP~~ia~~~~~~g~~~-~ii~l 33 (281) -||+|.|.+=..+++.+...+..+ +++.. T Consensus 42 viI~G~GrvG~~ia~~L~~~~~~~~vviD~ 71 (183) T 3c85_A 42 VLILGMGRIGTGAYDELRARYGKISLGIEI 71 (183) T ss_dssp EEEECCSHHHHHHHHHHHHHHCSCEEEEES T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 899898889999999999848986999938 No 168 >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Probab=28.26 E-value=23 Score=14.66 Aligned_cols=142 Identities=11% Similarity=0.089 Sum_probs=77.3 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC---CCCC---CC---------C--CCEEEEEHHHHHHHHHHHHHCC Q ss_conf 3999977980389999999978997899995486---6731---03---------8--8567873899999999998649 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNE---CSFD---WQ---------D--FECRELPLGDFCVLRSILHQYN 65 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~---~~~~---~~---------~--~~~~~~~ig~ig~li~~Lk~~~ 65 (281) |+-+..=.|..-....+.+.+-|.+++.---.+. .... ++ + .....++=...-..+...-..+ T Consensus 16 ~v~vqGitg~~g~~~~~~m~~ygt~iv~GV~P~kgG~~v~GvPvy~SV~ea~~~~~~d~aiI~vPa~~v~~ai~ea~~~g 95 (305) T 2fp4_A 16 KVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAE 95 (305) T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHTT T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEECCCCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCC T ss_conf 69998798847669999999848967985579978734338435382999962417531665148788899999987556 Q ss_pred CCEEEEEC-CCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHC------------CH Q ss_conf 54067702-423210001110260357899999987510480358999999999769748211222------------52 Q gi|254780768|r 66 IGRIVVAG-AIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEI------------VP 132 (281) Q Consensus 66 i~~ivmaG-~V~krP~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~------------l~ 132 (281) |+-+|... .+. . . | ..+.+ .+.-.+.|.++++++.+ .| T Consensus 96 i~~iViit~Gf~--e-~-----~------~~~~~---------------~~~a~~~g~riiGPNc~Gii~p~~~~~~~~~ 146 (305) T 2fp4_A 96 VPLVVCITEGIP--Q-Q-----D------MVRVK---------------HRLLRQGKTRLIGPNCPGVINPGECKIGIMP 146 (305) T ss_dssp CSEEEECCCCCC--H-H-----H------HHHHH---------------HHHTTCSSCEEECSSSCEEEETTTEEEESSC T ss_pred CCEEEEECCCCC--H-H-----H------HHHHH---------------HHHHHCCCCEEECCCCCCCCCCCCCEEEECC T ss_conf 788999059997--5-5-----3------79999---------------9997428968988998766376624575167 Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCE Q ss_conf 42035433455465323478899899999973326722599981974 Q gi|254780768|r 133 ELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGR 179 (281) Q Consensus 133 ~ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVv~~g~ 179 (281) ..+..+|.++-..-| =..+..++..+....+|||.+|.-|. T Consensus 147 ~~~~~~G~vgiiSqS------G~l~~~i~~~~~~~G~G~S~~Vs~Gn 187 (305) T 2fp4_A 147 GHIHKKGRIGIVSRS------GTLTYEAVHQTTQVGLGQSLCVGIGG 187 (305) T ss_dssp GGGCCEEEEEEEESC------SHHHHHHHHHHHHTTCCEEEEEECCS T ss_pred CCCCCCCCEEEEEEC------CHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 534677661499822------43899999999976998799980798 No 169 >2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Probab=28.21 E-value=26 Score=14.29 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=28.4 Q ss_pred HHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEE Q ss_conf 999999984990999973977998589999999987968999 Q gi|254780768|r 233 KTVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274 (281) Q Consensus 233 ~Ti~~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~g 274 (281) +-++.++++|++.|=+..+.. .+.+.+.++||++||.+|- T Consensus 356 ~~l~~~k~~g~N~iR~~~~~~--~e~~~fyd~cDelGilVw~ 395 (848) T 2je8_A 356 TLFRDMKEANMNMVRIWGGGT--YENNLFYDLADENGILVWQ 395 (848) T ss_dssp HHHHHHHHTTCCEEEECTTSC--CCCHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHCCCCEEEECCCCC--CHHHHHHHHHHHCCCEEEE T ss_conf 999999867997999679999--8069999988755999986 No 170 >3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A Probab=28.13 E-value=16 Score=15.70 Aligned_cols=52 Identities=13% Similarity=0.006 Sum_probs=28.6 Q ss_pred HHHHHHHHCCCCEEEEEECCCCC-CCCCC-------C--CEEEEEHH----HHHHHHHHHHHCCCC Q ss_conf 99999997899789999548667-31038-------8--56787389----999999999864954 Q gi|254780768|r 16 YVAKAARLKNDEPVIASVLNECS-FDWQD-------F--ECRELPLG----DFCVLRSILHQYNIG 67 (281) Q Consensus 16 ~ia~~~~~~g~~~~ii~l~~~~~-~~~~~-------~--~~~~~~ig----~ig~li~~Lk~~~i~ 67 (281) ..+.+....|.+|+++.+...+- .+... . ....+.+. ++.++.++.+++++. T Consensus 122 at~~ai~~~Ga~pvf~Did~~t~~id~~~le~~it~ktkaIi~vh~~G~~~d~~~i~~ia~~~~i~ 187 (437) T 3bb8_A 122 TTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAHTLGNLFDLAEVRRVADKYNLW 187 (437) T ss_dssp HHHHHHHHTTCEEEECCEETTTTEECGGGHHHHCCTTEEEEEEECGGGCCCCHHHHHHHHHHHTCE T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC T ss_conf 999999985998999304566432218999987246973899845777633348999999985981 No 171 >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, PSI-2; 2.30A {Staphylococcus aureus subsp} Probab=28.10 E-value=26 Score=14.28 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=26.2 Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 97-399997798038999999997899789999 Q gi|254780768|r 1 MK-RLLIIAGSGMLPYYVAKAARLKNDEPVIAS 32 (281) Q Consensus 1 M~-kigIIAG~G~LP~~ia~~~~~~g~~~~ii~ 32 (281) |+ ||+|| |.|..=-+++-.+.++|+++.++. T Consensus 1 m~MkI~Ii-GaGaiG~~~a~~L~~~G~~Vtl~~ 32 (294) T 3g17_A 1 MSLSVAII-GPGAVGTTIAYELQQSLPHTTLIG 32 (294) T ss_dssp --CCEEEE-CCSHHHHHHHHHHHHHCTTCEEEE T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHCCCCEEEEE T ss_conf 99989999-968999999999995599279997 No 172 >2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown function; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A* Probab=27.81 E-value=26 Score=14.34 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=18.7 Q ss_pred EEEECCEEEEEECCCCHHHHHHHHHHHHH Q ss_conf 99819748896253421799999997543 Q gi|254780768|r 173 AVSIGGRVVALEGIEGTDSMLQRIVDCRN 201 (281) Q Consensus 173 vVv~~g~ViaiEa~eGTD~mi~R~~~~~~ 201 (281) --.--|++--.+...--+++++|+.+.-+ T Consensus 238 ~~~G~Grig~l~~p~sl~~f~~~vk~~L~ 266 (370) T 2nyd_A 238 SLYGLGVMAEVDNQMTLEDFAADIKSKLN 266 (370) T ss_dssp EEEESCEEEEEEEEEEHHHHHHHHHHHTT T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC T ss_conf 77684048856999789999999999809 No 173 >2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus} Probab=27.69 E-value=27 Score=14.23 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=25.3 Q ss_pred CCEEEE-EEC-CCC-HHHHHHHHHHHCCCCEEEEEE Q ss_conf 973999-977-980-389999999978997899995 Q gi|254780768|r 1 MKRLLI-IAG-SGM-LPYYVAKAARLKNDEPVIASV 33 (281) Q Consensus 1 M~kigI-IAG-~G~-LP~~ia~~~~~~g~~~~ii~l 33 (281) |+||.+ |.| +|. +-..+.+.+++.|.++.++.= T Consensus 1 MkrI~lgITGasga~~a~~l~~~L~k~g~~V~vv~T 36 (189) T 2ejb_A 1 MQKIALCITGASGVIYGIKLLQVLEELDFSVDLVIS 36 (189) T ss_dssp CCEEEEEECSSTTHHHHHHHHHHHHHTTCEEEEEEC T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 988999974289999999999999978997999964 No 174 >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Probab=27.58 E-value=27 Score=14.26 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=27.7 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9739999779803899999999789978999954 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVL 34 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~ 34 (281) |+||++ -|.|..=..++..+..+|+++.+.... T Consensus 15 m~KI~V-iGaG~~Gtala~~La~~g~~V~l~~~~ 47 (366) T 1evy_A 15 LNKAVV-FGSGAFGTALAMVLSKKCREVCVWHMN 47 (366) T ss_dssp EEEEEE-ECCSHHHHHHHHHHTTTEEEEEEECSC T ss_pred CCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 576999-898999999999999789968999629 No 175 >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase, RV2981C, structural genomics, TB structural genomics consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Probab=27.10 E-value=11 Score=16.95 Aligned_cols=35 Identities=6% Similarity=0.069 Sum_probs=27.7 Q ss_pred EEEEEECCCCH--------HHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 39999779803--------899999999789978999954866 Q gi|254780768|r 3 RLLIIAGSGML--------PYYVAKAARLKNDEPVIASVLNEC 37 (281) Q Consensus 3 kigIIAG~G~L--------P~~ia~~~~~~g~~~~ii~l~~~~ 37 (281) |||+|.|+-+- -..+++++.+.+|+++.+.+..+. T Consensus 12 kI~vl~GG~S~E~eVSl~S~~~v~~~L~~~~y~v~~i~i~~~g 54 (373) T 3lwb_A 12 RVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAG 54 (373) T ss_dssp EEEEEEEC-----CHHHHHHHHHHHHSCTTTEEEEEEEECTTC T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC T ss_conf 7999968677406999999999999755508869999984899 No 176 >2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* Probab=26.45 E-value=28 Score=14.09 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=45.5 Q ss_pred CCE--EEEE-ECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 973--9999-77980389999999978997899995486673103885678738999999999986495406770242 Q gi|254780768|r 1 MKR--LLII-AGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAI 75 (281) Q Consensus 1 M~k--igII-AG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V 75 (281) |++ ||+. +|-|-|.+ .+++++.--..-++.+.+.+...+-+.+..++ ..-.-.++++|.+++|+-+|+|-.= T Consensus 10 m~~~pIgvFDSGvGGLtv--l~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~i-~~~~~~~~~~l~~~~~~~IViACNT 84 (273) T 2oho_A 10 MDTRPIGFLDSGVGGLTV--VCELIRQLPHEKIVYIGDSARAPYGPRPKKQI-KEYTWELVNFLLTQNVKMIVFACNT 84 (273) T ss_dssp CCCCCEEEEESSSTTHHH--HHHHHHHCTTCCEEEEECGGGCCCTTSCHHHH-HHHHHHHHHHHHTTTCSEEEECCHH T ss_pred CCCCCEEEEECCCCHHHH--HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 799988999789777999--99999978998999994688899899999999-9999999999996067849998285 No 177 >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 2i80_A* Probab=26.43 E-value=28 Score=14.09 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=26.3 Q ss_pred CEEEEEECCCCH--------HHHHHHHHHHCCCCEEEEEECCC Q ss_conf 739999779803--------89999999978997899995486 Q gi|254780768|r 2 KRLLIIAGSGML--------PYYVAKAARLKNDEPVIASVLNE 36 (281) Q Consensus 2 ~kigIIAG~G~L--------P~~ia~~~~~~g~~~~ii~l~~~ 36 (281) +||+||+|+-+- -..+.+++++.|++++++.+... T Consensus 4 ~~I~vl~GG~S~E~~iSl~Sg~~v~~aL~~~g~~v~~i~i~~~ 46 (364) T 2i87_A 4 ENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITND 46 (364) T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECTT T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCC T ss_conf 8899995918754399999999999987773997999998489 No 178 >2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate esterase; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 Probab=26.39 E-value=28 Score=14.08 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=14.6 Q ss_pred HHHHHHHHHHCCCCEEEEE Q ss_conf 9999999986495406770 Q gi|254780768|r 54 FCVLRSILHQYNIGRIVVA 72 (281) Q Consensus 54 ig~li~~Lk~~~i~~ivma 72 (281) ...++..|++++++=..|+ T Consensus 56 t~~il~~L~~~~ikATFFv 74 (254) T 2iw0_A 56 TPQLLDILKQNDVRATFFV 74 (254) T ss_dssp HHHHHHHHHHHTCCCEEEE T ss_pred HHHHHHHHHHCCCCEEEEE T ss_conf 9999999997799389999 No 179 >1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Probab=26.27 E-value=28 Score=14.07 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=39.6 Q ss_pred CCEEEEEECCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEEECHHHC Q ss_conf 771899934888753121066279999999984990999973977998589999999987968999577545 Q gi|254780768|r 209 KSGVLVKMCKSQQDMRADLPSIGAKTVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCGIDREFA 280 (281) Q Consensus 209 ~~~ilvK~~K~~QD~r~DlP~IG~~Ti~~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~g~~~~~~ 280 (281) .+++++-+..|= +.=.+.++.+|++-++.....-- +.....++.++.||-+..+..++. T Consensus 121 ~~~~lyvt~~PC-----------~~Ca~~i~~~gI~~V~~~~~~~~--~~~~~~~~l~~~gI~v~~i~~~~~ 179 (193) T 1vq2_A 121 EGATMYVTLSPC-----------PDCAKAIAQSGIKKLVYCETYDK--NKPGWDDILRNAGIEVFNVPKKNL 179 (193) T ss_dssp TTCEEEEEECCC-----------HHHHHHHHHHTCCEEEEEECCTT--CCTTTTHHHHHTTCEEEECCGGGC T ss_pred CCCEEECCCCCH-----------HHHHHHHHHHCCCEEEEEECCCC--CCHHHHHHHHHCCCEEEECCHHHH T ss_conf 774366478965-----------99999999979898999628999--537999999987997995199999 No 180 >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Probab=26.26 E-value=28 Score=14.07 Aligned_cols=73 Identities=11% Similarity=0.091 Sum_probs=45.8 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCC----C---C--CCCCEEEEEHHHHHHHHHHHHHCCCCEEEE Q ss_conf 973999977980389999999978997899995486673----1---0--388567873899999999998649540677 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSF----D---W--QDFECRELPLGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~----~---~--~~~~~~~~~ig~ig~li~~Lk~~~i~~ivm 71 (281) |+||=|..|+|-+=..+++.+.++|+++.++.+...... . + .++.....++.+...+.+.++ .++.+.. T Consensus 4 ~k~ILITG~tGfiG~~l~~~Ll~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~~~v~~ 81 (348) T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA--KADAIVH 81 (348) T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT--TCSEEEE T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHC--CCCEEEH T ss_conf 98899947886899999999997799739999837874344777888615880899762789899998761--6875414 Q ss_pred ECCC Q ss_conf 0242 Q gi|254780768|r 72 AGAI 75 (281) Q Consensus 72 aG~V 75 (281) .... T Consensus 82 ~a~~ 85 (348) T 1oc2_A 82 YAAE 85 (348) T ss_dssp CCSC T ss_pred HHHH T ss_conf 2454 No 181 >1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A* Probab=26.17 E-value=29 Score=14.05 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=9.4 Q ss_pred HHHCCCEEECHHHCCHH Q ss_conf 99769748211222524 Q gi|254780768|r 117 LESYGVSVVGAHEIVPE 133 (281) Q Consensus 117 fe~~G~~vi~~~~~l~~ 133 (281) +++..-.+++.+.|-.+ T Consensus 456 i~~~~~~ivGvN~f~~~ 472 (727) T 1req_A 456 IDSGRQPLIGVNKYRLE 472 (727) T ss_dssp HHHTSSCCBTTTBSCCS T ss_pred HHCCCCEEEECCCCCCC T ss_conf 85487657513678887 No 182 >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Probab=26.15 E-value=29 Score=14.05 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=28.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 73999977980389999999978997899995 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASV 33 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l 33 (281) +||.|..|.|.+=..+++.+.++|++++++.- T Consensus 5 ~kILVtGatG~iG~~lv~~Ll~~g~~V~~l~R 36 (308) T 1qyc_A 5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVR 36 (308) T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECC T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 97999898838999999999978896999988 No 183 >1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha sandwich topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Probab=25.63 E-value=15 Score=15.99 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=61.8 Q ss_pred HHHHHHHHCCCCEEEEEECCCCCC---------CCCCCCEEE----EEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH Q ss_conf 999999978997899995486673---------103885678----7389999999999864954067702423210001 Q gi|254780768|r 16 YVAKAARLKNDEPVIASVLNECSF---------DWQDFECRE----LPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNVQ 82 (281) Q Consensus 16 ~ia~~~~~~g~~~~ii~l~~~~~~---------~~~~~~~~~----~~ig~ig~li~~Lk~~~i~~ivmaG~V~krP~~~ 82 (281) .+++.++..+.++++..-...... .+...+... ++-..-..+..+|+++++++++++|--+. --.. T Consensus 42 ~l~~~ar~~~~pvi~~~~~~~~~~g~~~~~~~~~~~~~~~v~~K~~~saF~~t~L~~~L~~~gi~~lii~G~~T~-~CV~ 120 (208) T 1yac_A 42 ALGDLAKYFNLPTILTTSAETGPNGPLVPELKAQFPDAPYIARPGNINAWDNEDFVKAVKATGKKQLIIAGVVTE-VCVA 120 (208) T ss_dssp HHHHHHHHTTCCEEEEEESTTTTTCCBCHHHHHHCTTSCEEEESSCSSGGGSHHHHHHHHHTTCSEEEEEEBSCC-CCCH T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCC-CHHH T ss_conf 999999974998699972588888764333442079998884278247887944999999669978999861556-3899 Q ss_pred HHCCCHHHHHHHHHH------HHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCC Q ss_conf 110260357899999------987510480358999999999769748211222524203 Q gi|254780768|r 83 DLCFSIKDSLRISKM------IWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLV 136 (281) Q Consensus 83 ~l~~D~~~~~~l~k~------l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~ 136 (281) .+..-+... +.-...-.+..-=.+-.+.++..|..++...+++-||+- T Consensus 121 ------~Ta~da~~~Gy~V~Vv~Da~~s~~~~~h~~aL~~m~~~g~~i~tte~vl~el~~ 174 (208) T 1yac_A 121 ------FPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLMTWFGVACELHR 174 (208) T ss_dssp ------HHHHHHHHTTCEEEEETTSCBCSSHHHHHHHHHHHHHHTCEEECHHHHHHHHHC T ss_pred ------HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECHHHHHHHHHH T ss_conf ------999999987997999571668899999999999999889999659999999972 No 184 >2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics; HET: EPE; 2.20A {Bacillus cereus atcc 14579} SCOP: c.135.1.1 Probab=25.48 E-value=29 Score=13.97 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=13.4 Q ss_pred CEEEEEECCCCHHHHHHHHHHHH Q ss_conf 74889625342179999999754 Q gi|254780768|r 178 GRVVALEGIEGTDSMLQRIVDCR 200 (281) Q Consensus 178 g~ViaiEa~eGTD~mi~R~~~~~ 200 (281) |+|--.+.-.--++.++|+.+.- T Consensus 270 Grig~l~~p~sl~~f~~~vk~~l 292 (397) T 2gx8_A 270 GKIGYLQEEMTLGQFAEHVKQSL 292 (397) T ss_dssp EEEEEEEEEEEHHHHHHHHHHHT T ss_pred EEEEECCCCCCHHHHHHHHHHHC T ss_conf 06998179867999999999875 No 185 >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative; 2.19A {Bacteroides fragilis nctc 9343} Probab=25.04 E-value=30 Score=13.92 Aligned_cols=123 Identities=17% Similarity=0.038 Sum_probs=61.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC-C---------------C-CCCCCEE--EEEHHHHHHHHHHHH Q ss_conf 7399997798038999999997899789999548667-3---------------1-0388567--873899999999998 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECS-F---------------D-WQDFECR--ELPLGDFCVLRSILH 62 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~-~---------------~-~~~~~~~--~~~ig~ig~li~~Lk 62 (281) .+||+| |.|..-..+++.+.++|+++..+.=++... . + ..+.+.. .++-.++..++..++ T Consensus 11 ~~I~iI-G~G~mG~~la~~L~~~g~~v~~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~divilav~~~~i~~v~~~l~ 89 (266) T 3d1l_A 11 TPIVLI-GAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQGIV 89 (266) T ss_dssp CCEEEE-CCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHHHHHHH T ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEECCHHHHHCCCCCEEEECCHHHHHHHHHHHH T ss_conf 919998-3309999999999988996799978999999999987698386577886303553588457888999999999 Q ss_pred HCCCCEEEE---ECCCCCCCCHHHHCCCHHH---HHHHHH---H----HHHHHCCCCHHHHHHHHHHHHHCCCEEEC Q ss_conf 649540677---0242321000111026035---789999---9----98751048035899999999976974821 Q gi|254780768|r 63 QYNIGRIVV---AGAIDRRPNVQDLCFSIKD---SLRISK---M----IWQLVSGGNAAILKASIDLLESYGVSVVG 126 (281) Q Consensus 63 ~~~i~~ivm---aG~V~krP~~~~l~~D~~~---~~~l~k---~----l~~~~~~gDd~iL~~i~~~fe~~G~~vi~ 126 (281) ...-...++ +|.+. .-.+......... ....+. . ..-....+|+..+..+..+|+.-|-++.- T Consensus 90 ~~~~~~~ii~~~s~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lg~~~~~ 165 (266) T 3d1l_A 90 EGKREEALMVHTAGSIP-MNVWEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYD 165 (266) T ss_dssp TTCCTTCEEEECCTTSC-GGGSTTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHHTTCSCEEE T ss_pred HHCCCCCEEEEECCCCC-HHHHHHHHCCCCCCCEECCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEE T ss_conf 74464547886168752-89997762036654211268997556642776999648989999999999981990899 No 186 >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* Probab=24.88 E-value=30 Score=13.90 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=39.6 Q ss_pred CEEEEEECCCC---HHHHHHHHHHHCCCCEEEEEECCCCCCCC-------CCCCEEEE---EHHHHHHHHHHHHHC Q ss_conf 73999977980---38999999997899789999548667310-------38856787---389999999999864 Q gi|254780768|r 2 KRLLIIAGSGM---LPYYVAKAARLKNDEPVIASVLNECSFDW-------QDFECREL---PLGDFCVLRSILHQY 64 (281) Q Consensus 2 ~kigIIAG~G~---LP~~ia~~~~~~g~~~~ii~l~~~~~~~~-------~~~~~~~~---~ig~ig~li~~Lk~~ 64 (281) +|.+||-|.+. +=..+++.+...|.++++........... ........ +..++...+...... T Consensus 9 gK~~lITGass~~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 84 (265) T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV 84 (265) T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH T ss_conf 9979998999850189999999998699999995887999999999862697279983132247899999999874 No 187 >2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A* Probab=24.47 E-value=31 Score=13.85 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=34.1 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-CEEEEEHHHHHHHHHHHHH Q ss_conf 399997798038999999997899789999548667310388-5678738999999999986 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDF-ECRELPLGDFCVLRSILHQ 63 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~-~~~~~~ig~ig~li~~Lk~ 63 (281) ||++| |.|..=..+++.+. ++++++++...........+. ....+++.+...+.+.++. T Consensus 18 ki~vl-G~G~vG~~~~~~L~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~ 77 (365) T 2z2v_A 18 KVLIL-GAGNIGRAIAWDLK-DEFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKE 77 (365) T ss_dssp EEEEE-CCSHHHHHHHHHHT-TTSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTT T ss_pred EEEEE-CCCHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHC T ss_conf 79999-97599999999986-47986999877888998774277368734999999999735 No 188 >3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Probab=24.27 E-value=31 Score=13.82 Aligned_cols=19 Identities=0% Similarity=-0.122 Sum_probs=6.5 Q ss_pred HHHHHHHHCCCCEEEEECC Q ss_conf 9999998649540677024 Q gi|254780768|r 56 VLRSILHQYNIGRIVVAGA 74 (281) Q Consensus 56 ~li~~Lk~~~i~~ivmaG~ 74 (281) +.+..+|..|+.-+=+.|+ T Consensus 315 ~~l~~~k~~G~N~iR~~~~ 333 (605) T 3lpf_A 315 HDHALMDWIGANSYRTSHY 333 (605) T ss_dssp HHHHHHHHHTCCEEEECSS T ss_pred HHHHHHHHCCCCEEECCCC T ss_conf 9999998659758955677 No 189 >1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Probab=23.95 E-value=31 Score=13.78 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=27.2 Q ss_pred CC--EEEEEECCCCHH--------HHHHHHHHHCCCCEEEEEECCC Q ss_conf 97--399997798038--------9999999978997899995486 Q gi|254780768|r 1 MK--RLLIIAGSGMLP--------YYVAKAARLKNDEPVIASVLNE 36 (281) Q Consensus 1 M~--kigIIAG~G~LP--------~~ia~~~~~~g~~~~ii~l~~~ 36 (281) |+ |||+++|+-+-= ..+.+++++.+|+++.+.+... T Consensus 1 M~k~ki~vl~GG~S~E~~vSl~Sg~~v~~aL~~~~y~v~~i~i~~~ 46 (343) T 1e4e_A 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKS 46 (343) T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTT T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCC T ss_conf 9987899996957842899999999999975162896999988699 No 190 >1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus HB8} SCOP: c.1.15.3 PDB: 1bxc_A Probab=23.84 E-value=31 Score=13.77 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=88.5 Q ss_pred HHHHHHHHHHHHHCCCEEECHHHCCHHHCC----CCCCCCCCCCCHHH--HHHHHHHHHHHHHHCCCCCEEEEEEECCEE Q ss_conf 358999999999769748211222524203----54334554653234--788998999999733267225999819748 Q gi|254780768|r 107 AAILKASIDLLESYGVSVVGAHEIVPELLV----QVGSLGTCVPNRDV--KRDILAAMKSAEALSELDVGQSAVSIGGRV 180 (281) Q Consensus 107 d~iL~~i~~~fe~~G~~vi~~~~~l~~ll~----~~G~l~~~~p~~~~--~~dI~~g~~i~~~l~~~DiGQsvVv~~g~V 180 (281) +.++..+.+.+++.|+++...+ ++++. ..|-+|.+.|+-.. ...+..++.+++++|.-. +|+-.|+- T Consensus 68 ~~~~~~lk~~l~~~Gl~~~~~t---~nlf~~p~y~~Gs~tnPDp~vR~~Ai~~~k~aId~a~~LGa~~----~vlW~G~d 140 (387) T 1bxb_A 68 DQIVRRFKKALDETGLKVPMVT---ANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAEI----YVVWPGRE 140 (387) T ss_dssp HHHHHHHHHHHHHHTCBCCEEE---CCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCE----EEECCTTC T ss_pred HHHHHHHHHHHHHCCCCEEEEC---CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE----EEECCCCC T ss_conf 9999999999996399112423---6544573131487789798999999999999999999958986----99757878 Q ss_pred EEEECCCCHH---------HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC-EEEECCCCHHHHHHHHHCCCE---EEE Q ss_conf 8962534217---------999999975431234566771899934888753-121066279999999984990---999 Q gi|254780768|r 181 VALEGIEGTD---------SMLQRIVDCRNNGRILAGKSGVLVKMCKSQQDM-RADLPSIGAKTVQNVIKAGLA---GIA 247 (281) Q Consensus 181 iaiEa~eGTD---------~mi~R~~~~~~~~~~~~~~~~ilvK~~K~~QD~-r~DlP~IG~~Ti~~~~~ag~~---gia 247 (281) +-+-...|| +.++.+.++... .+.++.+.==|||.-.+ +..+|++|. ++..+.+.|.. ++. T Consensus 141 -G~~~~~~~d~~~~~~~~~e~l~~v~~~a~~----~g~g~~~~iEpKP~EP~~~~~~~d~~~-al~~l~~~g~~~~~gl~ 214 (387) T 1bxb_A 141 -GAEVEATGKARKVWDWVREALNFMAAYAED----QGYGYRFALEPKPNEPRGDIYFATVGS-MLAFIHTLDRPERFGLN 214 (387) T ss_dssp -EESCGGGCGGGTHHHHHHHHHHHHHHHHHH----HTCCCEEEECCCSSSSSSEESSCSHHH-HHHHHTTSSSGGGEEEC T ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCCCCCCCCHHH-HHHHHHHHCCHHHEEEC T ss_conf -777876558999999999999999987765----075726998157888775652588999-99999982981436334 Q ss_pred EECCCEEE--ECHHHHHHHHHHCCC Q ss_conf 97397799--858999999998796 Q gi|254780768|r 248 LEAGKSLV--LEKELVKKHADEAGI 270 (281) Q Consensus 248 iea~~~li--ld~~~~i~~a~~~~i 270 (281) ++.+...+ .+.+..++.|-.++. T Consensus 215 lD~gHa~lag~n~~~~va~a~~~gr 239 (387) T 1bxb_A 215 PEFAHETMAGLNFVHAVAQALDAGK 239 (387) T ss_dssp CBHHHHHHTTCCHHHHHHHHHHTTC T ss_pred CCHHHHHHCCCCHHHHHHHHHHCCC T ss_conf 0142786448987999999986795 No 191 >2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Probab=23.81 E-value=31 Score=13.77 Aligned_cols=57 Identities=7% Similarity=-0.028 Sum_probs=36.4 Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEE Q ss_conf 038999999997899789999548667310388567873899999999998649540677 Q gi|254780768|r 12 MLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 12 ~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivm 71 (281) ..-..+++++.+.|++|.++.-.+... ........+.+....+-+.+++.+++=|.. T Consensus 34 ~~v~~La~~L~~~GH~V~v~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~DIVH~ 90 (342) T 2iuy_A 34 WVVANLMDGLLELGHEVFLLGAPGSPA---GRPGLTVVPAGEPEEIERWLRTADVDVVHD 90 (342) T ss_dssp HHHHHHHHHHHHTTCEEEEESCTTSCC---CSTTEEECSCCSHHHHHHHHHHCCCSEEEE T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCC---CCCCCCCCCCCHHHHHHHHHHHCCCCEEEE T ss_conf 999999999997699899992599876---677630068431999999998779999998 No 192 >3l23_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} Probab=23.79 E-value=31 Score=13.76 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=22.8 Q ss_pred HHHHHHHHHCCCEEEEEECCC-----EEEECHHHHHHHHHHCC Q ss_conf 999999998499099997397-----79985899999999879 Q gi|254780768|r 232 AKTVQNVIKAGLAGIALEAGK-----SLVLEKELVKKHADEAG 269 (281) Q Consensus 232 ~~Ti~~~~~ag~~giaiea~~-----~lild~~~~i~~a~~~~ 269 (281) ++-++.+.+.|++|.+||-.. +=+-.-.+.+++..+++ T Consensus 258 ~~i~~~L~~~gy~G~~vE~e~~~~~~~~~~~~~~s~~~l~~~~ 300 (303) T 3l23_A 258 EMIFKQMYANGIKDYFVELEQMPDGRTQFAGVKDCADYLIKAP 300 (303) T ss_dssp HHHHHHHHHHTCCCEEECCCCCTTSCCHHHHHHHHHHHHHHCT T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCC T ss_conf 9999999984998799987258889999999999999999679 No 193 >3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Probab=23.27 E-value=32 Score=13.70 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=29.7 Q ss_pred HHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEE Q ss_conf 99999984990999973977998589999999987968999 Q gi|254780768|r 234 TVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274 (281) Q Consensus 234 Ti~~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~g 274 (281) -++.|+++|++.|=+...- +.+.+.++||++||.+|. T Consensus 377 di~l~K~~g~N~iR~~h~p----~~~~fydlcDe~Gl~V~~ 413 (1010) T 3bga_A 377 DIRLMKQHNINMVRNSHYP----THPYWYQLCDRYGLYMID 413 (1010) T ss_dssp HHHHHHHTTCCEEEETTSC----CCHHHHHHHHHHTCEEEE T ss_pred HHHHHHHCCCCEEECCCCC----CCHHHHHHHHHCCCEEEE T ss_conf 9999986497726416899----989999987636988999 No 194 >3dzb_A Prephenate dehydrogenase; domain SWAP, PSI2, NYSGXRC, tyrosine biosynthesis, EC:1.3.12.-, structural genomics; 2.46A {Streptococcus thermophilus lmg 18311} Probab=23.25 E-value=32 Score=13.69 Aligned_cols=126 Identities=14% Similarity=0.098 Sum_probs=66.4 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC---------------CC----CCCCC--EEEEEHHHHHHHHH Q ss_conf 97399997798038999999997899789999548667---------------31----03885--67873899999999 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECS---------------FD----WQDFE--CRELPLGDFCVLRS 59 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~---------------~~----~~~~~--~~~~~ig~ig~li~ 59 (281) ++||+|| |.|..=--+|.+++++|....|.++.-..+ .+ ..+.+ +...+..++..+++ T Consensus 5 ~k~I~II-G~GlmG~Sia~al~~~~~~~~V~~~D~~~~~~~~a~~~g~id~~~~~~~~~~~~~DlVIla~P~~~~~~vl~ 83 (317) T 3dzb_A 5 KKTIYIA-GLGLIGGSLALGIKRDHPDYEILGYNRSDYSRNIALERGIVDRATGDFKEFAPLADVIILAVPIKQTMAYLK 83 (317) T ss_dssp -CEEEES-CCSHHHHHHHHHHHTTCTTSEEEEECSCHHHHHHHHHTCSCSEEESCHHHHGGGCSEEECCSCHHHHHHHHH T ss_pred CCEEEEE-EECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHH T ss_conf 8879999-218899999999996099988999969999999999869974003889886145898999168126678899 Q ss_pred HHHHCCCC-E-EE-EECCCCCCCCHHHHCCC--------------HHHH----HHHHHHHHHH-------HCCCCHHHHH Q ss_conf 99864954-0-67-70242321000111026--------------0357----8999999875-------1048035899 Q gi|254780768|r 60 ILHQYNIG-R-IV-VAGAIDRRPNVQDLCFS--------------IKDS----LRISKMIWQL-------VSGGNAAILK 111 (281) Q Consensus 60 ~Lk~~~i~-~-iv-maG~V~krP~~~~l~~D--------------~~~~----~~l~k~l~~~-------~~~gDd~iL~ 111 (281) .+.....+ . ++ -+|.+ |.+........ ..+. ......++.. ....+..... T Consensus 84 ~l~~~~~~~~~ivtDv~Sv-K~~~~~~~~~~~~~~~~~fV~~HPmaG~e~~G~~~a~~~lf~~~~~i~~p~~~~~~~~~~ 162 (317) T 3dzb_A 84 ELADLDLKDNVIITDAGST-KREIVEAAERYLTGKNVQFVGSHPMAGSHKSGAIAADVTLFENAYYIFTPTSLTKETTIP 162 (317) T ss_dssp HHTTSCCCTTCEEECCCSC-CHHHHHHHHHHHTTSSCEECEEEECBCC------CCCTTTTTTSEEEEECCTTCCTTHHH T ss_pred HHHHHHHCCCEEEEEECCC-CCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCCHHHHHH T ss_conf 9875550467599860565-623899999865668851103665546455677676155445843773378630588999 Q ss_pred HHHHHHHHCCCEEECHH Q ss_conf 99999997697482112 Q gi|254780768|r 112 ASIDLLESYGVSVVGAH 128 (281) Q Consensus 112 ~i~~~fe~~G~~vi~~~ 128 (281) .+.++++..|-+++-.+ T Consensus 163 ~v~~~~~~~G~~~~~~~ 179 (317) T 3dzb_A 163 ELKDILSGLKSRYVEID 179 (317) T ss_dssp HHHHHGGGGCCEEEECC T ss_pred HHHHHHHHCCCEEEECC T ss_conf 99999998099799748 No 195 >3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, protein structure initiative; 1.90A {Bacteroides fragilis nctc 9343} Probab=23.11 E-value=32 Score=13.68 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=22.3 Q ss_pred HHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEEE Q ss_conf 999999984990999973977998589999999987968999 Q gi|254780768|r 233 KTVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274 (281) Q Consensus 233 ~Ti~~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~g 274 (281) +-++.++++|++.|=+... -..+++.++||++||.+|. T Consensus 308 ~~l~~~k~~G~N~iR~~h~----p~~~~fyd~cDe~GilV~~ 345 (667) T 3cmg_A 308 EDVALMREMGVNAIRLAHY----PQATYMYDLMDKHGIVTWA 345 (667) T ss_dssp HHHHHHHHTTCCEEEETTS----CCCHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHCCCCEEEECCC----CCCHHHHHHHCCCCCEEEE T ss_conf 9999988648878996589----9989999975406998996 No 196 >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Probab=23.09 E-value=32 Score=13.67 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.8 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 3999977980389999999978997899995 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASV 33 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l 33 (281) ||-|..|.|.+=..+++.+.++|++++++.- T Consensus 6 KILVtGatG~iG~~l~~~L~~~g~~V~~l~R 36 (313) T 1qyd_A 6 RVLIVGGTGYIGKRIVNASISLGHPTYVLFR 36 (313) T ss_dssp CEEEESTTSTTHHHHHHHHHHTTCCEEEECC T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 8999899848999999999978896999989 No 197 >1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} Probab=22.98 E-value=33 Score=13.66 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=23.5 Q ss_pred CC-EEEEEEC--CCCHHHHHHHHHHHCCCCEEE Q ss_conf 97-3999977--980389999999978997899 Q gi|254780768|r 1 MK-RLLIIAG--SGMLPYYVAKAARLKNDEPVI 30 (281) Q Consensus 1 M~-kigIIAG--~G~LP~~ia~~~~~~g~~~~i 30 (281) |+ ||||-.| +|-=|..+.++++......++ T Consensus 1 M~~kIaIT~GDPaGIGpEIilka~~~~~~~~~v 33 (328) T 1yxo_A 1 MSLRFALTPGEPAGIGPDLCLLLARSAQPHPLI 33 (328) T ss_dssp CCCCEEEECCSTTSSHHHHHHHHTTSCCSSCEE T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEE T ss_conf 996099988987446899999999717999989 No 198 >2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A* Probab=22.77 E-value=33 Score=13.63 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=20.3 Q ss_pred CCEEEEEECCCCHHH----HHHHHHHHC-CCCEEEEEE Q ss_conf 973999977980389----999999978-997899995 Q gi|254780768|r 1 MKRLLIIAGSGMLPY----YVAKAARLK-NDEPVIASV 33 (281) Q Consensus 1 M~kigIIAG~G~LP~----~ia~~~~~~-g~~~~ii~l 33 (281) |+||||..|+=+=|. .+++.+.+. +.+-+++.. T Consensus 1 MkkI~lfgGsFdP~h~GH~~i~~~a~~~~~~d~v~~~~ 38 (189) T 2h29_A 1 MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLP 38 (189) T ss_dssp CEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEE T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 97699963276837799999999999980999599997 No 199 >3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus} Probab=22.75 E-value=33 Score=13.63 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=45.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCC--------C--CCCCC---------------EEE----EEH Q ss_conf 973999977980389999999978997899995486673--------1--03885---------------678----738 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSF--------D--WQDFE---------------CRE----LPL 51 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~--------~--~~~~~---------------~~~----~~i 51 (281) |+ +.||+|++.+|..+... ...++ +|+..+.++. + .-++. ... -.. T Consensus 1 Mk-~~ii~gg~~~p~~~~~~---~~~d~-iIa~DgGa~~l~~~gi~Pd~ivGDfDSi~~~~~~~~~~~~~~~~~~~dkd~ 75 (212) T 3l8m_A 1 MK-ANLLCGNRNLPKHILVE---HKHEH-WIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQIEINPYNSEKDD 75 (212) T ss_dssp CE-EEEECCSSSCCTTHHHH---TTTSE-EEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHTBCCCCC---CB T ss_pred CE-EEEEECCCCCCHHHHHH---CCCCE-EEEECHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCEEEECCCCCCH T ss_conf 98-99996899899899964---44988-999844899999879985989717899986899998659709987887871 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCC Q ss_conf 99999999998649540677024232100 Q gi|254780768|r 52 GDFCVLRSILHQYNIGRIVVAGAIDRRPN 80 (281) Q Consensus 52 g~ig~li~~Lk~~~i~~ivmaG~V~krP~ 80 (281) -++.+.+.+..+++.+++++.|....|.. T Consensus 76 TD~ekAl~~~~~~~~~~I~i~G~~GgR~D 104 (212) T 3l8m_A 76 TDLALGIDQAVKRGYRNIDVYGATGGRLD 104 (212) T ss_dssp CHHHHHHHHHHHTTCCEEEEESCSSSCHH T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHH T ss_conf 39999999998669987999857667742 No 200 >3fn9_A Putative beta-galactosidase; structural genomics, glycosidase, hydrolase, PSI-2; 2.70A {Bacteroides fragilis nctc 9343} Probab=22.44 E-value=33 Score=13.59 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=3.5 Q ss_pred HHHHHHHHCCC Q ss_conf 99999998796 Q gi|254780768|r 260 LVKKHADEAGI 270 (281) Q Consensus 260 ~~i~~a~~~~i 270 (281) .+.++||++|| T Consensus 345 ~fydlcDe~Gi 355 (692) T 3fn9_A 345 YLYSRCDTLGL 355 (692) T ss_dssp HHHHHHHHHTC T ss_pred HHHHHHHHCCC T ss_conf 99998864695 No 201 >2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1} Probab=22.38 E-value=29 Score=14.01 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=32.9 Q ss_pred HHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHH Q ss_conf 35899999999976974821122252420354334554653234788 Q gi|254780768|r 107 AAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRD 153 (281) Q Consensus 107 d~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~d 153 (281) ..||.+-...|.++||. .+..++....=+++|-+...-+||++.-. T Consensus 16 e~Il~aA~~l~~~~G~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~~ 61 (196) T 2qwt_A 16 ARVLEVAYDTFAAEGLG-VPMDEIARRAGVGAGTVYRHFPTKQALVV 61 (196) T ss_dssp HHHHHHHHHHHHHTCTT-SCHHHHHHHTTSCHHHHHHHCSSHHHHHH T ss_pred HHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHCCCHHHHHH T ss_conf 99999999999986978-88999999969499999878489999999 No 202 >3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} Probab=22.31 E-value=34 Score=13.57 Aligned_cols=72 Identities=8% Similarity=0.130 Sum_probs=38.0 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCC--CCCCCCE--EEEEHHHHHHHH---HHHHHCCCCEEEEEC Q ss_conf 973999977980389999999978997899995486673--1038856--787389999999---999864954067702 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSF--DWQDFEC--RELPLGDFCVLR---SILHQYNIGRIVVAG 73 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~--~~~~~~~--~~~~ig~ig~li---~~Lk~~~i~~ivmaG 73 (281) |++||||+ .+|.++..-...- ...-.....+..-. .+..... ....+|...... ..+.+.+++.++++| T Consensus 3 ~~~I~Ii~---A~~~E~~~l~~~l-~~~~~~~~~~~~~~~g~~~g~~v~i~~~GiG~~~aa~~~~~li~~~~~~~iI~~G 78 (233) T 3eei_A 3 LKTVAVIG---AMEQEIELLREMM-ENVKAVSFGRFSAYEGELAGKRMVLALSGIGKVNAAVATAWIIREFAADCVINTG 78 (233) T ss_dssp CCEEEEEE---SSHHHHHHHHHHC-EEEEEEEETTEEEEEEEETTEEEEEEECCSSHHHHHHHHHHHHHHHCCSEEEECC T ss_pred CCEEEEEE---CCHHHHHHHHHHH-CCCEEEEECCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 76099991---2999999999862-2673898389079999999999999988999799999999999967998999987 Q ss_pred CCC Q ss_conf 423 Q gi|254780768|r 74 AID 76 (281) Q Consensus 74 ~V~ 76 (281) --- T Consensus 79 ~aG 81 (233) T 3eei_A 79 SAG 81 (233) T ss_dssp EEE T ss_pred EEC T ss_conf 785 No 203 >1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 function project, S2F, structural genomics, unknown functio; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A Probab=22.24 E-value=34 Score=13.56 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=30.9 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEE-CCCCHHHHHHHHHCCCEEEEEECCCEEEEC-HHHHHHHH Q ss_conf 2179999999754312345667718999348887531210-662799999999849909999739779985-89999999 Q gi|254780768|r 188 GTDSMLQRIVDCRNNGRILAGKSGVLVKMCKSQQDMRADL-PSIGAKTVQNVIKAGLAGIALEAGKSLVLE-KELVKKHA 265 (281) Q Consensus 188 GTD~mi~R~~~~~~~~~~~~~~~~ilvK~~K~~QD~r~Dl-P~IG~~Ti~~~~~ag~~giaiea~~~lild-~~~~i~~a 265 (281) -.+++.+|+..... ...+.+...+...-.|+=+ +--|-.-+..+++.|+....-. | +.-....| T Consensus 138 s~~el~~~vk~~l~-------~~~~~~~~~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITG-------e~k~h~~~~A 203 (247) T 1nmo_A 138 PGLELASWIEARLG-------RKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITG-------EVSEQTIHSA 203 (247) T ss_dssp CHHHHHHHHHHHHT-------SCCEEECTTSCSSEEEEEECSSSCGGGHHHHHHHCCSEEEES-------CCCHHHHHHH T ss_pred CHHHHHHHHHHHCC-------CCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEC-------CCCHHHHHHH T ss_conf 89999999998729-------985763388874356999986888789999985599789976-------6777999999 Q ss_pred HHCCCEEEEEC Q ss_conf 98796899957 Q gi|254780768|r 266 DEAGIFVCGID 276 (281) Q Consensus 266 ~~~~i~i~g~~ 276 (281) ..+|+.++.+. T Consensus 204 ~~~gl~li~~g 214 (247) T 1nmo_A 204 REQGLHFYAAG 214 (247) T ss_dssp HHTTCEEEECC T ss_pred HHCCCEEEECC T ss_conf 97699899909 No 204 >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* 1nhw_A* 1nhg_A* 1nnu_A* ... Probab=22.20 E-value=34 Score=13.56 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=27.8 Q ss_pred CEEEEEECCC---CHHHHHHHHHHHCCCCEEEEEE Q ss_conf 7399997798---0389999999978997899995 Q gi|254780768|r 2 KRLLIIAGSG---MLPYYVAKAARLKNDEPVIASV 33 (281) Q Consensus 2 ~kigIIAG~G---~LP~~ia~~~~~~g~~~~ii~l 33 (281) +|++||.|.| -+=..+|+.+-+.|.++++... T Consensus 2 ~kVAlITG~a~s~GIG~aiA~~la~~GA~V~l~~~ 36 (329) T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIW 36 (329) T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEC T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 96899979899973999999999986998999707 No 205 >3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A Probab=22.19 E-value=34 Score=13.56 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=26.9 Q ss_pred HHHHHHHCCCCCEEEEEEECCEEEEEECCCCHHHHHHHH Q ss_conf 999997332672259998197488962534217999999 Q gi|254780768|r 158 MKSAEALSELDVGQSAVSIGGRVVALEGIEGTDSMLQRI 196 (281) Q Consensus 158 ~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD~mi~R~ 196 (281) .+.++.+....+|.-+|+.++.++++ =|+.-|.|. T Consensus 12 ~ea~~~M~~~~i~~~~V~d~~~lvGI----vT~~Di~~~ 46 (70) T 3fio_A 12 DRVAKILSRNKAGSAVVMEGDEILGV----VTERDILDK 46 (70) T ss_dssp HHHHHHHHHTTCSEEEEEETTEEEEE----EEHHHHHHH T ss_pred HHHHHHHHHCCCCEEEEEECCEEEEE----EEHHHHHHH T ss_conf 99999999749988999889986279----869999999 No 206 >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Probab=22.17 E-value=34 Score=13.55 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=24.2 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 9997798038999999997899789999 Q gi|254780768|r 5 LIIAGSGMLPYYVAKAARLKNDEPVIAS 32 (281) Q Consensus 5 gIIAG~G~LP~~ia~~~~~~g~~~~ii~ 32 (281) .||-|+|.==..+|..+.++|+++.++- T Consensus 14 vIIVGsG~aG~v~A~~La~~G~~VlvLE 41 (507) T 1coy_A 14 ALVIGSGYGGAVAALRLTQAGIPTQIVE 41 (507) T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEC T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 8997768899999999975859699997 No 207 >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium frigidimaris KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Probab=22.13 E-value=34 Score=13.55 Aligned_cols=169 Identities=10% Similarity=0.049 Sum_probs=80.9 Q ss_pred CEEEEEECCCCHHHHHHHHHHHC-CCC-EEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCC Q ss_conf 73999977980389999999978-997-8999954866731038856787389999999999864954067702423210 Q gi|254780768|r 2 KRLLIIAGSGMLPYYVAKAARLK-NDE-PVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRP 79 (281) Q Consensus 2 ~kigIIAG~G~LP~~ia~~~~~~-g~~-~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~krP 79 (281) +||=|..|+|-+=..+++.+.+. +.+ ++.............+.....+.+.....+-..++...+..++........+ T Consensus 3 kKILItG~sGfiG~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~v~~~a~~~~~ 82 (312) T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALLSAT 82 (312) T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCH T ss_conf 70999758988999999999986696699982576454545056887999647889999999754982898623010432 Q ss_pred CHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-EE--ECHHHCCHHHCCCC--CCCCCCCCCHHHHHHH Q ss_conf 0011102603578999999875104803589999999997697-48--21122252420354--3345546532347889 Q gi|254780768|r 80 NVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGV-SV--VGAHEIVPELLVQV--GSLGTCVPNRDVKRDI 154 (281) Q Consensus 80 ~~~~l~~D~~~~~~l~k~l~~~~~~gDd~iL~~i~~~fe~~G~-~v--i~~~~~l~~ll~~~--G~l~~~~p~~~~~~dI 154 (281) ... | +.. .....-.|.-++|.+ ..+.+. ++ .|......+..... -......|...--..= T Consensus 83 ~~~----~--~~~-----~~~~Nv~gt~~ll~~----~~~~~v~~~i~~SS~~vyg~~~~~~~~~e~~~~~~~~~Y~~~K 147 (312) T 2yy7_A 83 AEK----N--PAF-----AWDLNMNSLFHVLNL----AKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISK 147 (312) T ss_dssp HHH----C--HHH-----HHHHHHHHHHHHHHH----HHTTSCSEEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHH T ss_pred HHC----C--HHH-----HHHHHHHHHHHHHHH----HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 440----9--999-----999999999999999----9970877069817702357421223211235679987777654 Q ss_pred HHHHHHHHHHCCCCCEEEEEEECCEEEEEEC Q ss_conf 9899999973326722599981974889625 Q gi|254780768|r 155 LAAMKSAEALSELDVGQSAVSIGGRVVALEG 185 (281) Q Consensus 155 ~~g~~i~~~l~~~DiGQsvVv~~g~ViaiEa 185 (281) ..+-.++...+...--+.++++-..|.+-.. T Consensus 148 ~~~e~~~~~~~~~~~~~~~i~r~~~v~G~~~ 178 (312) T 2yy7_A 148 QAGERWCEYYHNIYGVDVRSIRYPGLISWST 178 (312) T ss_dssp HHHHHHHHHHHHHHCCEEECEEECEEECSSS T ss_pred HHHHHHHHHHHHHCCCEEEEEEECEEECCCC T ss_conf 2101245778885497167653360887898 No 208 >1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1 Probab=22.07 E-value=31 Score=13.77 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=29.0 Q ss_pred CHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHH Q ss_conf 03589999999997697482112225242035433455465323478 Q gi|254780768|r 106 NAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKR 152 (281) Q Consensus 106 Dd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~ 152 (281) -+.||.+-...|.++|+.=++..++....=.+.|-+...=+++++.. T Consensus 10 r~~Il~aa~~l~~~~G~~~~s~~~IA~~agvs~~tlY~~F~~K~~L~ 56 (183) T 1zk8_A 10 LQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVR 56 (183) T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHH T ss_conf 99999999999997492507699999988919889988869999999 No 209 >3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V} Probab=22.01 E-value=24 Score=14.56 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=39.5 Q ss_pred CHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHHH Q ss_conf 0358999999999769748211222524203543345546532347889 Q gi|254780768|r 106 NAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDI 154 (281) Q Consensus 106 Dd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~dI 154 (281) -..|+.+..+.|.++|++=++..+++...=++.|-+...-+++++.-+- T Consensus 14 r~~I~~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 62 (177) T 3kkc_A 14 KVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKE 62 (177) T ss_dssp HHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHH T ss_conf 9999999999998869740769999999797877743658988999999 No 210 >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Probab=21.86 E-value=34 Score=13.51 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=15.1 Q ss_pred EEEEECCCCHHHHHHHHHHHC-CCCE Q ss_conf 999977980389999999978-9978 Q gi|254780768|r 4 LLIIAGSGMLPYYVAKAARLK-NDEP 28 (281) Q Consensus 4 igIIAG~G~LP~~ia~~~~~~-g~~~ 28 (281) |||-.|-|.==-.+++.+..+ |+++ T Consensus 15 IgiTG~igSGKStv~~~l~~~~g~~v 40 (192) T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHV 40 (192) T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE T ss_conf 99878987889999999988539989 No 211 >2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1 Probab=21.81 E-value=34 Score=13.51 Aligned_cols=47 Identities=21% Similarity=0.166 Sum_probs=36.1 Q ss_pred HHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHH Q ss_conf 35899999999976974821122252420354334554653234788 Q gi|254780768|r 107 AAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRD 153 (281) Q Consensus 107 d~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~d 153 (281) ..||.+-.+.|.++||.=++..++....=.+.|.+...-||+++.-. T Consensus 10 ~~il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~sK~~L~~ 56 (180) T 2fd5_A 10 ARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALML 56 (180) T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHH T ss_conf 99999999999870944067999999868897617676589999999 No 212 >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structural genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Probab=21.72 E-value=35 Score=13.49 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=22.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCC--CEEEE Q ss_conf 97399997798038999999997899--78999 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKND--EPVIA 31 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~--~~~ii 31 (281) |+|+||| |.|.-=+..|+++.+.+. +++++ T Consensus 6 ~krVaII-GaGpsGL~aa~~Ll~~~~~~~v~vf 37 (447) T 2gv8_A 6 IRKIAII-GAGPSGLVTAKALLAEKAFDQVTLF 37 (447) T ss_dssp CCEEEEE-CCSHHHHHHHHHHHTTTCCSEEEEE T ss_pred CCEEEEE-CCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 9989998-9439999999999982899988999 No 213 >2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1 Probab=21.71 E-value=35 Score=13.49 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=42.5 Q ss_pred CHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 035899999999976974821122252420354334554653234788998999999 Q gi|254780768|r 106 NAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMKSAE 162 (281) Q Consensus 106 Dd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~dI~~g~~i~~ 162 (281) -..|+.+-.+.|.++|+.=++.++++.+.=.+.|-+...=+++++.-.--.-..+.. T Consensus 15 r~~Il~Aa~~l~~~~G~~~~Tv~~Ia~~agvs~~t~Y~yF~sKe~Ll~~~~~~~~~~ 71 (195) T 2iu5_A 15 QKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFENDFAE 71 (195) T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 999999999999976963068999999868886179887739999999999999999 No 214 >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Probab=21.60 E-value=25 Score=14.42 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=7.3 Q ss_pred HHHHHHHHHHHCCC Q ss_conf 99999999986495 Q gi|254780768|r 53 DFCVLRSILHQYNI 66 (281) Q Consensus 53 ~ig~li~~Lk~~~i 66 (281) ++.++.++.+++++ T Consensus 166 d~~~i~~i~k~~~i 179 (399) T 2oga_A 166 DMDALRELADRHGL 179 (399) T ss_dssp CHHHHHHHHHHHTC T ss_pred CHHHHHHHHHHCCC T ss_conf 36999999997398 No 215 >1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A* Probab=21.52 E-value=35 Score=13.47 Aligned_cols=123 Identities=19% Similarity=0.083 Sum_probs=61.0 Q ss_pred EEEEE-ECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH Q ss_conf 39999-77980389999999978997899995486673103885678738999999999986495406770242321000 Q gi|254780768|r 3 RLLII-AGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNV 81 (281) Q Consensus 3 kigII-AG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~V~krP~~ 81 (281) |||+. +|-|-|. +.+++++.--+.-++.+.+.+...+.+.+...+ ..-.-.+.++|.+++|+-+||+=.=..--.+ T Consensus 2 kIgvfDSGiGGlt--v~~~l~~~~p~~~~iy~~D~~~~PYG~ks~e~i-~~~~~~~~~~L~~~~~~~IviaCNTa~a~~~ 78 (254) T 1b73_A 2 KIGIFDSGVGGLT--VLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTI-IRYSLECAGFLKDKGVDIIVVACNTASAYAL 78 (254) T ss_dssp EEEEEESSSGGGT--HHHHHHHHSTTCEEEEEECTTTCCCTTSCHHHH-HHHHHHHHHHHHTTTCSEEEECCHHHHTTSH T ss_pred EEEEEECCCCHHH--HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHH T ss_conf 7999948986799--999999978999889994688899998999999-9999999999997699999993785789999 Q ss_pred HHHC-----CCHHHHHHHHHHHHHHHCC------C-CHHHHH-HHHHHHHHCCCEEECHH Q ss_conf 1110-----2603578999999875104------8-035899-99999997697482112 Q gi|254780768|r 82 QDLC-----FSIKDSLRISKMIWQLVSG------G-NAAILK-ASIDLLESYGVSVVGAH 128 (281) Q Consensus 82 ~~l~-----~D~~~~~~l~k~l~~~~~~------g-Dd~iL~-~i~~~fe~~G~~vi~~~ 128 (281) +.++ |-+.......+-....... + ..++-. ..-+.+++.|++++.+. T Consensus 79 ~~l~~~~~ipvi~ii~~~~~~a~~~~~~~~VgvLAT~~Ti~s~~Y~~~l~~~g~~v~~~~ 138 (254) T 1b73_A 79 ERLKKEINVPVFGVIEPGVKEALKKSRNKKIGVIGTPATVKSGAYQRKLEEGGADVFAKA 138 (254) T ss_dssp HHHHHHSSSCEEESHHHHHHHHHHHCSSCEEEEEECHHHHHHCHHHHHHHTTSCEEEEEE T ss_pred HHHHHHCCCCEEECCCHHHHHHHHHCCCCEEEEEEEHHHHHCHHHHHHHHHCCCEEEEEC T ss_conf 999986379876056287999997267875999960666656799999985599599608 No 216 >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 2ogu_A 2fy8_A 3kxd_A Probab=21.27 E-value=35 Score=13.43 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=22.5 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 999779803899999999789978999954 Q gi|254780768|r 5 LIIAGSGMLPYYVAKAARLKNDEPVIASVL 34 (281) Q Consensus 5 gIIAG~G~LP~~ia~~~~~~g~~~~ii~l~ 34 (281) =+|+|+|.+-..+++.+ ++++++++... T Consensus 12 ivI~G~~~~~~~l~~~L--~~~~v~vi~~d 39 (234) T 2aef_A 12 VVICGWSESTLECLREL--RGSEVFVLAED 39 (234) T ss_dssp EEEESCCHHHHHHHHHS--TTSEEEEEESC T ss_pred EEEECCCHHHHHHHHHH--CCCCCEEEECC T ss_conf 99989848999999996--77997899889 No 217 >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Probab=21.26 E-value=35 Score=13.43 Aligned_cols=156 Identities=14% Similarity=0.107 Sum_probs=75.2 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CC-----CCEEEEEHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 97399997798038999999997899789999548667310-38-----8567873899999999998649540677024 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDW-QD-----FECRELPLGDFCVLRSILHQYNIGRIVVAGA 74 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~-~~-----~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~ 74 (281) | +||+| |-|..=.-+|+.+.++|+++++.....+....+ +. ..........+..++..+.. .+.+++.-. T Consensus 2 M-kIG~I-GLG~MG~~mA~nL~~~G~~V~v~dr~~~k~~~l~~~ga~~~~~~~~~~~~~~~~~~~~l~~--~~~Ii~~v~ 77 (478) T 1pgj_A 2 M-DVGVV-GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKK--PRKALILVQ 77 (478) T ss_dssp B-SEEEE-CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCS--SCEEEECCC T ss_pred C-EEEEE-CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHCCC--CCEEEEECC T ss_conf 8-69997-6688899999999967992799959999999999758965567407675159999974689--998999888 Q ss_pred CCCCCCHHHHCCCHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCC Q ss_conf 2321000111026035789999998751048---------0358999999999769748211222524203543345546 Q gi|254780768|r 75 IDRRPNVQDLCFSIKDSLRISKMIWQLVSGG---------NAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCV 145 (281) Q Consensus 75 V~krP~~~~l~~D~~~~~~l~k~l~~~~~~g---------Dd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~ 145 (281) -. .+ .+.. +..++ .....| +-..-..+.+.+++.|+..+++---=..--+..|.. - - T Consensus 78 ~g-~~-v~~v---------i~~l~-~~l~~g~iiID~st~~~~~t~~~~~~l~~~gi~fldapVSGg~~gA~~g~~-i-M 143 (478) T 1pgj_A 78 AG-AA-TDST---------IEQLK-KVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPA-F-F 143 (478) T ss_dssp CS-HH-HHHH---------HHHHH-HHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCE-E-E T ss_pred CC-HH-HHHH---------HHHHH-HHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHCCCC-E-E T ss_conf 98-67-9999---------99999-737799866216777869999999998506970424535665466644564-1-1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCC-CCEEEEEE Q ss_conf 5323478899899999973326-72259998 Q gi|254780768|r 146 PNRDVKRDILAAMKSAEALSEL-DVGQSAVS 175 (281) Q Consensus 146 p~~~~~~dI~~g~~i~~~l~~~-DiGQsvVv 175 (281) +. -+....+....+++.++.- +-|..+|. T Consensus 144 vG-G~~~~~~~~~pil~~~a~k~~~g~~~v~ 173 (478) T 1pgj_A 144 PG-GTLSVWEEIRPIVEAAAAKADDGRPCVT 173 (478) T ss_dssp EE-ECHHHHHHHHHHHHHHSCBCTTSCBSCC T ss_pred EC-CCHHHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 04-8699999999999986210357996599 No 218 >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Probab=21.06 E-value=36 Score=13.41 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=24.0 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEE Q ss_conf 97399997798038999999997899789 Q gi|254780768|r 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPV 29 (281) Q Consensus 1 M~kigIIAG~G~LP~~ia~~~~~~g~~~~ 29 (281) |+-|+|..+.|.==-.+++.+...|+.++ T Consensus 1 MkiI~l~G~~GSGKsTva~~L~~~g~~~i 29 (179) T 3lw7_A 1 IKVILITGMPGSGKSEFAKLLKERGAKVI 29 (179) T ss_dssp -CEEEEECCTTSCHHHHHHHHHHTTCEEE T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCEEE T ss_conf 97999989999889999999998799299 No 219 >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* Probab=21.03 E-value=36 Score=13.40 Aligned_cols=70 Identities=13% Similarity=-0.076 Sum_probs=42.6 Q ss_pred EEEECCCCHH---HHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 9997798038---999999997899789999548667310-388567873899999999998649540677024 Q gi|254780768|r 5 LIIAGSGMLP---YYVAKAARLKNDEPVIASVLNECSFDW-QDFECRELPLGDFCVLRSILHQYNIGRIVVAGA 74 (281) Q Consensus 5 gIIAG~G~LP---~~ia~~~~~~g~~~~ii~l~~~~~~~~-~~~~~~~~~ig~ig~li~~Lk~~~i~~ivmaG~ 74 (281) =+|=|.+.=+ ..+++.+.++|+.++.+.+.|.-.... ................+..+...+..+++++|. T Consensus 20 vllHG~~~~~~~~~~~~~~L~~~Gy~v~~~D~~G~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 93 (247) T 1tqh_A 20 LLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQDVMNGYEFLKNKGYEKIAVAGL 93 (247) T ss_dssp EEECCTTCCTHHHHHHHHHHHHTTCEEEECCCTTSSSCHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEEEE T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 99899999989999999999978998999543124898766665435789999999999999729982899971 No 220 >1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 Probab=21.00 E-value=36 Score=13.40 Aligned_cols=53 Identities=11% Similarity=0.005 Sum_probs=24.1 Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCC-----EEEEEHHHHHHHHHHHHHCCCCEEE Q ss_conf 999999978997899995486673103885-----6787389999999999864954067 Q gi|254780768|r 16 YVAKAARLKNDEPVIASVLNECSFDWQDFE-----CRELPLGDFCVLRSILHQYNIGRIV 70 (281) Q Consensus 16 ~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~-----~~~~~ig~ig~li~~Lk~~~i~~iv 70 (281) ...+.++..|.+.+=+..... .....+. .-+-.+..+..+++..+++|+.=++ T Consensus 46 ~~l~~~~~~G~N~vR~~~~~~--~~~~~~~~~~g~~~~~~l~~~d~~v~~a~~~Gi~v~~ 103 (373) T 1rh9_A 46 NTFQQASKYKMNVARTWAFSH--GGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIM 103 (373) T ss_dssp HHHHHHHHTTCCEEEEESSCS--SSSSCSEEETTEECHHHHHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHCCCCEEEECCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 999999977993999788467--6665457888743744515999999999877998999 No 221 >3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} Probab=20.84 E-value=29 Score=13.99 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=39.6 Q ss_pred CHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHHH Q ss_conf 0358999999999769748211222524203543345546532347889 Q gi|254780768|r 106 NAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDI 154 (281) Q Consensus 106 Dd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~dI 154 (281) .+.||.+-...|.++||.=++..++....=+++|.+...=+++++.-.- T Consensus 16 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~~K~~L~~~ 64 (199) T 3crj_A 16 TEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAA 64 (199) T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHH T ss_conf 9999999999999749040779999999791999998885899999999 No 222 >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Probab=20.82 E-value=36 Score=13.37 Aligned_cols=174 Identities=17% Similarity=0.094 Sum_probs=89.6 Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEE-EHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 97-39999779803899999999789978999954866731038856787-38999999999986495406770242321 Q gi|254780768|r 1 MK-RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECREL-PLGDFCVLRSILHQYNIGRIVVAGAIDRR 78 (281) Q Consensus 1 M~-kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~-~ig~ig~li~~Lk~~~i~~ivmaG~V~kr 78 (281) |+ |||+| |-|..=.-+++.+.++|+++++.....+....+........ ++.+ ..+. |+-|+.+=. + . T Consensus 4 M~mkIgvI-GlG~MG~~~a~~L~~~G~~V~~~d~~~~~~~~l~~~g~~~~~s~~e------~~~~--~divi~~v~-~-~ 72 (299) T 1vpd_A 4 MTMKVGFI-GLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKA------IAEQ--CDVIITMLP-N-S 72 (299) T ss_dssp --CEEEEE-CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHH------HHHH--CSEEEECCS-S-H T ss_pred CCCEEEEE-EEHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEECCCHHH------HHHC--CCEEEEECC-C-H T ss_conf 54528898-3089889999999978996999809999999999859945489999------9847--998999759-8-7 Q ss_pred CCHHHHCCCHHHHHHHH--HHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 00011102603578999--9998751048035899999999976974821122252420354334554653234788998 Q gi|254780768|r 79 PNVQDLCFSIKDSLRIS--KMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILA 156 (281) Q Consensus 79 P~~~~l~~D~~~~~~l~--k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~dI~~ 156 (281) +......+......... ..+.-...-.+-...+.+.+.+++.|...++..-.-....+..|.++---- .+....+. T Consensus 73 ~~v~~v~~~~~~i~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~G~~~vd~pv~gg~~~a~~g~l~i~~g--g~~~~~~~ 150 (299) T 1vpd_A 73 PHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVG--GDKAIFDK 150 (299) T ss_dssp HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEE--SCHHHHHH T ss_pred HHHHHHHHCCHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHCCCEEEEEE--CCHHHHHH T ss_conf 8999999582468734999998998998976899999999997699587778858803663497179993--75888899 Q ss_pred HHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHH Q ss_conf 99999973326722599981974889625342179999999754 Q gi|254780768|r 157 AMKSAEALSELDVGQSAVSIGGRVVALEGIEGTDSMLQRIVDCR 200 (281) Q Consensus 157 g~~i~~~l~~~DiGQsvVv~~g~ViaiEa~eGTD~mi~R~~~~~ 200 (281) ...++..+++ .+ .-+ +-.|+-...+=+.++. T Consensus 151 ~~~~l~~~~~-----~~-------~~~-G~~G~a~~~Kl~~N~~ 181 (299) T 1vpd_A 151 YYDLMKAMAG-----SV-------VHT-GDIGAGNVTKLANQVI 181 (299) T ss_dssp HHHHHHTTEE-----EE-------EEE-ESTTHHHHHHHHHHHH T ss_pred HHHHHHHHCC-----CC-------EEC-CCCCHHHHHHHHHHHH T ss_conf 9999999728-----85-------653-9955748999999999 No 223 >2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3} Probab=20.75 E-value=28 Score=14.08 Aligned_cols=46 Identities=24% Similarity=0.324 Sum_probs=32.7 Q ss_pred HHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHH Q ss_conf 35899999999976974821122252420354334554653234788 Q gi|254780768|r 107 AAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRD 153 (281) Q Consensus 107 d~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~d 153 (281) ..||.+-...|.++||+ .+..++....=++.|-+...-+|+++.-. T Consensus 18 ~~Il~aa~~l~~~~G~~-~T~~~IA~~agvs~~tiY~~F~sK~~L~~ 63 (194) T 2q24_A 18 DKILAAAVRVFSEEGLD-AHLERIAREAGVGSGTLYRNFPTREALIE 63 (194) T ss_dssp HHHHHHHHHHHHHHCTT-CCHHHHHHHTTCCHHHHHHHCCSHHHHHH T ss_pred HHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHCCCHHHHHH T ss_conf 99999999999986966-76999999839887469887699999999 No 224 >2qiw_A PEP phosphonomutase; NP_600288.1, structural genomics, joint center for structural genomics, JCSG; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} Probab=20.55 E-value=32 Score=13.67 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=38.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC-CC----CCEEEECCC---------CHHHHHHHHHCCCEEEEE Q ss_conf 3421799999997543123456677189993488-87----531210662---------799999999849909999 Q gi|254780768|r 186 IEGTDSMLQRIVDCRNNGRILAGKSGVLVKMCKS-QQ----DMRADLPSI---------GAKTVQNVIKAGLAGIAL 248 (281) Q Consensus 186 ~eGTD~mi~R~~~~~~~~~~~~~~~~ilvK~~K~-~Q----D~r~DlP~I---------G~~Ti~~~~~ag~~giai 248 (281) -+|-|++|+|+..|...| -.+|++-.++. .+ ...++.|+. +.-|++.+.+.|++-+.. T Consensus 164 ~~~~~eaI~Ra~ay~~AG-----Ad~i~ie~~~s~e~~~~i~~~v~~Pv~~~~~~~~~~~~~~~~~l~~lG~~~v~~ 235 (255) T 2qiw_A 164 EDPMVEAIKRIKLMEQAG-----ARSVYPVGLSTAEQVERLVDAVSVPVNITAHPVDGHGAGDLATLAGLGVRRVTF 235 (255) T ss_dssp SSHHHHHHHHHHHHHHHT-----CSEEEECCCCSHHHHHHHHTTCSSCBEEECBTTTBBTTBCHHHHHHTTCCEEEC T ss_pred CHHHHHHHHHHHHHHHCC-----CCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCCCEEEE T ss_conf 011999999999999829-----978998378999999999986499868998347889999899999759959998 No 225 >1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Probab=20.47 E-value=37 Score=13.33 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=16.6 Q ss_pred HHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEE Q ss_conf 999998499099997397799858999999998796899 Q gi|254780768|r 235 VQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVC 273 (281) Q Consensus 235 i~~~~~ag~~giaiea~~~lild~~~~i~~a~~~~i~i~ 273 (281) ++.|+++|++.|=+...- +.+.+.++||++||.+| T Consensus 355 l~l~k~~g~N~vR~~h~p----~~~~~y~lcDe~Gl~V~ 389 (1024) T 1yq2_A 355 LALMKRFNVNAIRTSHYP----PHPRLLDLADEMGFWVI 389 (1024) T ss_dssp HHHHHHTTCCEEEETTSC----CCHHHHHHHHHHTCEEE T ss_pred HHHHHHCCCCCEECCCCC----CCHHHHHHHHHCCCEEE T ss_conf 999997389700125899----99999997501797898 No 226 >3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Probab=20.45 E-value=37 Score=13.32 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=40.3 Q ss_pred CEEEEEE-CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC------CCCCCEEEEEHH------HH-HHHHHHHHHCCCC Q ss_conf 7399997-79803899999999789978999954866731------038856787389------99-9999999864954 Q gi|254780768|r 2 KRLLIIA-GSGMLPYYVAKAARLKNDEPVIASVLNECSFD------WQDFECRELPLG------DF-CVLRSILHQYNIG 67 (281) Q Consensus 2 ~kigIIA-G~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~------~~~~~~~~~~ig------~i-g~li~~Lk~~~i~ 67 (281) .|||+.+ |+|.-=..+.++.. .....-++.+....+.. ..+.++..++.. .. ..+++.|++.+++ T Consensus 13 ~riavl~SG~Gsnl~aLi~~~~-~~~~~~iv~vi~~~~~~~~~~A~~~gIp~~~i~~~~~~~r~~~~~~l~~~l~~~~~D 91 (215) T 3da8_A 13 ARLVVLASGTGSLLRSLLDAAV-GDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPD 91 (215) T ss_dssp EEEEEEESSCCHHHHHHHHHSS-TTCSEEEEEEEESSCCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCS T ss_pred CEEEEEECCCCHHHHHHHHHHC-CCCCCEEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 8899998368265999999637-799977999996785668899998399737740578899999999999998760999 Q ss_pred EEEEECCC Q ss_conf 06770242 Q gi|254780768|r 68 RIVVAGAI 75 (281) Q Consensus 68 ~ivmaG~V 75 (281) -+|++|.. T Consensus 92 liv~~g~~ 99 (215) T 3da8_A 92 LVVSAGFM 99 (215) T ss_dssp EEEEEECC T ss_pred EEEECCHH T ss_conf 99984613 No 227 >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Probab=20.44 E-value=37 Score=13.32 Aligned_cols=150 Identities=10% Similarity=-0.019 Sum_probs=80.7 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEE-EHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH Q ss_conf 39999779803899999999789978999954866731038856787-38999999999986495406770242321000 Q gi|254780768|r 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECREL-PLGDFCVLRSILHQYNIGRIVVAGAIDRRPNV 81 (281) Q Consensus 3 kigIIAG~G~LP~~ia~~~~~~g~~~~ii~l~~~~~~~~~~~~~~~~-~ig~ig~li~~Lk~~~i~~ivmaG~V~krP~~ 81 (281) |||+| |-|..=.-+|+.+.++|+++++.....+.-..+...-..+. +..++ .... ++++.=--+ .+.. T Consensus 6 kIg~I-GlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~------~~~~---dvv~~~l~~-~~a~ 74 (301) T 3cky_A 6 KIGFI-GLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKV------AAAS---DIIFTSLPN-AGIV 74 (301) T ss_dssp EEEEE-CCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHH------HHHC---SEEEECCSS-HHHH T ss_pred EEEEE-EHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEECCCHHHH------HHCC---CEEEEEECC-HHHH T ss_conf 89998-02788999999999789928997799999999998499785899999------8458---736885056-8899 Q ss_pred HHHCCCHHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 11102603578999---999875104803589999999997697482112225242035433455465323478899899 Q gi|254780768|r 82 QDLCFSIKDSLRIS---KMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAM 158 (281) Q Consensus 82 ~~l~~D~~~~~~l~---k~l~~~~~~gDd~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~~~dI~~g~ 158 (281) .............. +++ -.....+-..-+.+.+.+++.|++.+++--.-..-.+..|.++---- -+...++... T Consensus 75 ~~v~~~~~~i~~~~~~g~ii-id~sT~~p~~~~~~~~~~~~~g~~~ldaPVsGg~~~A~~g~l~i~~g--G~~~~~~~~~ 151 (301) T 3cky_A 75 ETVMNGPGGVLSACKAGTVI-VDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVG--ASEAVFEKIQ 151 (301) T ss_dssp HHHHHSTTCHHHHSCTTCEE-EECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEE--SCHHHHHHHH T ss_pred HHHHHCCCCHHHHCCCCCEE-EECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHCCCEEEEEC--CCHHHHHHCC T ss_conf 99981750365525899289-98999998999999999997699289247758877862497589847--9999998670 Q ss_pred HHHHHHCC Q ss_conf 99997332 Q gi|254780768|r 159 KSAEALSE 166 (281) Q Consensus 159 ~i~~~l~~ 166 (281) .+++.+++ T Consensus 152 ~~l~~~~~ 159 (301) T 3cky_A 152 PVLSVIGK 159 (301) T ss_dssp HHHHHHEE T ss_pred HHHHHHCC T ss_conf 99998489 No 228 >2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=20.36 E-value=27 Score=14.17 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHCCCEEECHHHCCHHHCCCCCCCCCCCCCHHH Q ss_conf 5899999999976974821122252420354334554653234 Q gi|254780768|r 108 AILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDV 150 (281) Q Consensus 108 ~iL~~i~~~fe~~G~~vi~~~~~l~~ll~~~G~l~~~~p~~~~ 150 (281) .||.+-.+.|.++|+.=++..++....=+++|.+...=+++++ T Consensus 13 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~ 55 (203) T 2np5_A 13 RLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDE 55 (203) T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHH T ss_conf 9999999999972903077999999979098877010699999 No 229 >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, structural genomics; 2.00A {Exiguobacterium sibiricum 255-15} Probab=20.36 E-value=37 Score=13.31 Aligned_cols=70 Identities=10% Similarity=0.021 Sum_probs=35.0 Q ss_pred CCEEEE-EECCCCHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCCCEEEEEH----HHHHHHHHHHHHCCCCEEEE Q ss_conf 973999-977980389999999978--997899995486673103885678738----99999999998649540677 Q gi|254780768|r 1 MKRLLI-IAGSGMLPYYVAKAARLK--NDEPVIASVLNECSFDWQDFECRELPL----GDFCVLRSILHQYNIGRIVV 71 (281) Q Consensus 1 M~kigI-IAG~G~LP~~ia~~~~~~--g~~~~ii~l~~~~~~~~~~~~~~~~~i----g~ig~li~~Lk~~~i~~ivm 71 (281) |+|..| |.|.|. -..+++.++.. +..+++......+........+..++. .-+..+.+.+++++++-++- T Consensus 2 m~k~~ILi~~~g~-~~~l~~~~~~~~~~~~vi~~D~~~~~~~~~~~D~~~~~p~~~~~~~~~~l~~i~~~~~id~iip 78 (331) T 2pn1_A 2 MQKPHLLITSAGR-RAKLVEYFVKEFKTGRVSTADCSPLASALYMADQHYIVPKIDEVEYIDHLLTLCQDEGVTALLT 78 (331) T ss_dssp TTCCEEEEESCTT-CHHHHHHHHHHCCSSEEEEEESCTTCGGGGGSSSEEECCCTTSTTHHHHHHHHHHHHTCCEEEE T ss_pred CCCCEEEEECCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE T ss_conf 9887899928861-8999999997499998999889999857884598898799885679999999999959999997 No 230 >2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical protein; PFAM04748, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7 Probab=20.34 E-value=37 Score=13.31 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=20.8 Q ss_pred CCHHHHHHHHHHHHHCCCEEECHHHCCHHH Q ss_conf 803589999999997697482112225242 Q gi|254780768|r 105 GNAAILKASIDLLESYGVSVVGAHEIVPEL 134 (281) Q Consensus 105 gDd~iL~~i~~~fe~~G~~vi~~~~~l~~l 134 (281) .|...++.+.+.+.+.+.-+.++.....+. T Consensus 112 ~~~~~~~~~~~~~~~~~~~frp~~~~~~~~ 141 (245) T 2nly_A 112 ENEKIMRAILEVVKEKNAFIIDSGTSPHSL 141 (245) T ss_dssp GCHHHHHHHHHHHHHTTCEEEECCCCSSCS T ss_pred CCHHHHHHHHHHHCCCCCEECCCCCCCCHH T ss_conf 677889999997475870660798862478 No 231 >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi} Probab=20.14 E-value=37 Score=13.28 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=40.7 Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHCC-CCEEEEEECCCCCCCCC--CCCEEEEEHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 97-39999779803899999999789-97899995486673103--885678738999999999986495406770 Q gi|254780768|r 1 MK-RLLIIAGSGMLPYYVAKAARLKN-DEPVIASVLNECSFDWQ--DFECRELPLGDFCVLRSILHQYNIGRIVVA 72 (281) Q Consensus 1 M~-kigIIAG~G~LP~~ia~~~~~~g-~~~~ii~l~~~~~~~~~--~~~~~~~~ig~ig~li~~Lk~~~i~~ivma 72 (281) |+ ||+|| |.|..=..+++.+...+ +++.++....+....+. .......++.+...+.+.++. ++=|+.+ T Consensus 4 m~~kI~Vi-GaG~vG~~va~~L~~~~~~~v~~~dr~~~~~~~~~~~~~~~~~~d~~d~~~l~~~l~~--~DvVi~~ 76 (118) T 3ic5_A 4 MRWNICVV-GAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGG--FDAVISA 76 (118) T ss_dssp TCEEEEEE-CCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTT--CSEEEEC T ss_pred CCCCEEEE-CCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC--CCEEEEC T ss_conf 60788998-6799999999999878998478612656664100012222111244899999999859--9899983 No 232 >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 Probab=20.12 E-value=37 Score=13.28 Aligned_cols=28 Identities=36% Similarity=0.360 Sum_probs=23.2 Q ss_pred EEEEE-ECCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 39999-779803899999999789978999 Q gi|254780768|r 3 RLLII-AGSGMLPYYVAKAARLKNDEPVIA 31 (281) Q Consensus 3 kigII-AG~G~LP~~ia~~~~~~g~~~~ii 31 (281) |++|| -|.|++=. ++++++..|.++.++ T Consensus 4 Ki~IID~g~gN~~S-v~~~l~~lg~~~~ii 32 (200) T 1ka9_H 4 KALLIDYGSGNLRS-AAKALEAAGFSVAVA 32 (200) T ss_dssp EEEEECSSCSCHHH-HHHHHHHTTCEEEEE T ss_pred EEEEEECCCCHHHH-HHHHHHHCCCCEEEE T ss_conf 79999489858999-999999879989998 Done!