RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780768|ref|YP_003065181.1| hypothetical protein
CLIBASIA_03295 [Candidatus Liberibacter asiaticus str. psy62]
(281 letters)
>gnl|CDD|33297 COG3494, COG3494, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 279
Score = 248 bits (634), Expect = 1e-66
Identities = 130/276 (47%), Positives = 181/276 (65%), Gaps = 2/276 (0%)
Query: 3 RLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILH 62
+L +IAG+G LP VA+ AR + P I + E + ++FE +E+ +G+ L +L
Sbjct: 6 KLGLIAGNGSLPLEVAENARNQGYAPFIIGLRGEADPELKEFEYKEVSIGEVGKLIKLLK 65
Query: 63 QYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGV 122
+ R+V+AG ++RRPN +DL + K++ L+ G +A +LKA ID +ES G
Sbjct: 66 TEGVDRVVLAGGVERRPNFRDLRPDKIGLAVLPKIVEALIRGDDA-LLKAVIDFIESRGF 124
Query: 123 SVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGRVVA 182
V+GAHEIVP LL + G L P+ + RDI +++A AL LDVGQ AV +GGRVVA
Sbjct: 125 KVIGAHEIVPGLLAETGPLTKKEPDNEDLRDIELGIEAANALGALDVGQGAVVVGGRVVA 184
Query: 183 LEGIEGTDSMLQRIVDCRNNGRILAGKSGVLVKMCKSQQDMRADLPSIGAKTVQNVIKAG 242
+EG EGTD+ML+R+ D R GR + GVLVKM K QQD RADLP+IG T++N KAG
Sbjct: 185 VEGAEGTDAMLRRVADLRKAGRA-ERRGGVLVKMAKPQQDERADLPTIGPNTIENAAKAG 243
Query: 243 LAGIALEAGKSLVLEKELVKKHADEAGIFVCGIDRE 278
LAGIA+EAG+ L+LE+E K A++ GIF+ GIDR+
Sbjct: 244 LAGIAIEAGRVLILEREATLKLANKLGIFIVGIDRD 279
>gnl|CDD|31086 COG0743, Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase
[Lipid metabolism].
Length = 385
Score = 33.3 bits (76), Expect = 0.085
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 190 DSMLQRIVDCRNNGRILAGKSGV--LVKMCKSQQDMRADLPSIGAKTVQNVIKAGLAGIA 247
+S + + D +L G+ G+ L + M A + + G IKAG IA
Sbjct: 59 ESAAKELEDLLPGTEVLVGEEGLCELAAEDDADVVMNAIVGAAGLLPTLAAIKAG-KTIA 117
Query: 248 LEAGKSLVLEKELVKKHADEAGIFVCGIDRE 278
L +SLV ELV A E+G + +D E
Sbjct: 118 LANKESLVTAGELVMDAAKESGAQLLPVDSE 148
>gnl|CDD|37590 KOG2379, KOG2379, KOG2379, Endonuclease MUS81 [Replication,
recombination and repair].
Length = 501
Score = 31.9 bits (72), Expect = 0.18
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 26 DEPVIASVLNECSFD--WQDFEC----RELPLGDFCVLRSILHQYNIGRIVVAGAIDRRP 79
D I S+L F ++ R L +GDF + H+Y+ +V+ ++R+
Sbjct: 235 DTREIKSLLRRLFFGEYFELEGVKHEVRSLEVGDFLWVAR--HKYDGTELVLDFIVERK- 291
Query: 80 NVQDLCFSIKD 90
+ DL SI+D
Sbjct: 292 RLDDLVSSIRD 302
>gnl|CDD|32596 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 30.6 bits (69), Expect = 0.44
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 226 DLPSIGAKTVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274
+L S + I AG SL + L+KK+ D+A IF
Sbjct: 215 ELLSKRKNISEPAIIVS-------AGPSLEKQLPLLKKYQDKATIFCAD 256
>gnl|CDD|144106 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase C,
X domain. This associates with pfam00387 to form a
single structural unit.
Length = 144
Score = 30.1 bits (69), Expect = 0.70
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 17 VAKAARLKNDEPVIASVLNECSFDWQD 43
+ + A + + PVI S+ N CS + Q
Sbjct: 76 IKEYAFVTSPYPVILSLENHCSPEQQA 102
>gnl|CDD|176536 cd08594, PI-PLCc_eta, Catalytic domain of metazoan
phosphoinositide-specific phospholipase C-eta. This
family corresponds to the catalytic domain present in
metazoan phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a
signaling enzyme that hydrolyzes the membrane
phospholipids phosphatidylinositol-4,5-bisphosphate
(PIP2) to generate two important second messengers in
eukaryotic signal transduction cascades, Inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which then phosphorylates other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. PI-PLC-eta represents a
class of neuron-speific PI-PLC that has an N-terminal
pleckstrin homology (PH) domain, an array of EF hands, a
PLC catalytic core domain, a C2 domain, and a unique
C-terminal tail that terminates with a PDZ-binding
motif, a potential interaction site for other signaling
proteins. The PLC catalytic core domain is a TIM barrel
with two highly conserved regions (X and Y) split by a
highly degenerate linker sequence. There are two
PI-PLC-eta isozymes (1-2), both neuron-specific enzymes.
They function as calcium sensors that are activated by
small increases in intracellular calcium concentrations.
The PI-PLC-eta isozymes are also activated through GPCR
stimulation. Aside from the PI-PLC-eta isozymes
identified in mammals, their eukaryotic homologs are
also present in this family.
Length = 227
Score = 29.4 bits (66), Expect = 1.3
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 17 VAKAARLKNDEPVIASVLNECSFDWQDFECRELP--LGDFCVLRSIL 61
+ K A +KN+ PVI S+ N CS Q + L LGD L S++
Sbjct: 79 INKYAFIKNEYPVILSIENHCSVQQQKKMAQYLKEILGDKLDLSSVI 125
>gnl|CDD|32789 COG2969, SspB, Stringent starvation protein B [General function
prediction only].
Length = 155
Score = 28.8 bits (64), Expect = 1.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 129 EIVPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIGGR 179
++ P L+V V G VP V+ + + A+ L++G VS R
Sbjct: 24 QLTPHLVVDVTLPGVKVPMEYVRDGQIVLNIAPRAVGNLELGNDWVSFNAR 74
>gnl|CDD|145731 pfam02732, ERCC4, ERCC4 domain. This domain is a family of
nucleases. The family includes EME1 which is an
essential component of a Holliday junction resolvase.
EME1 interacts with MUS81 to form a DNA
structure-specific endonuclease.
Length = 109
Score = 28.2 bits (63), Expect = 2.7
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 45 ECRELPLGDF-----------CVLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLR 93
E LP+GD+ + R + N+ ++V R + DL S+KD R
Sbjct: 31 EPCTLPVGDYLWSARNKSYKAELRRQLQLDENVLIVIV-----ERKELADLINSLKDG-R 84
Query: 94 ISKMIWQLVSGGNAAILKASIDLLESYG 121
+ + + +L + K + L+E
Sbjct: 85 LFEQLQRL---ARVSAYKKPVLLVEGDR 109
>gnl|CDD|36325 KOG1109, KOG1109, KOG1109, Vacuole membrane protein VMP1 [General
function prediction only].
Length = 440
Score = 28.0 bits (62), Expect = 3.1
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 12 MLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLG 52
+ PY++A+AARL EP D E E G
Sbjct: 224 LPPYFMARAARLSGVEP-------------DDEEYTEFEEG 251
>gnl|CDD|37914 KOG2703, KOG2703, KOG2703, C4-type Zn-finger protein [General
function prediction only].
Length = 460
Score = 27.6 bits (61), Expect = 3.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 149 DVKRDILAAMKSAEALSELDVGQSAVSIGGRVVALEGI 186
D+ RD+L + + ++ ELD+ ++GGR +EG+
Sbjct: 322 DLSRDVLKSETCSLSIPELDLELGGGTLGGRFTTIEGL 359
>gnl|CDD|177091 CHL00192, syfB, phenylalanyl-tRNA synthetase beta chain;
Provisional.
Length = 704
Score = 27.7 bits (62), Expect = 3.9
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 81 VQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESY 120
++DL F IK S+ ISK I +L+ +L+ SI L + Y
Sbjct: 616 IRDLSFIIKKSISISK-IKELIYQNGDNLLE-SITLFDYY 653
>gnl|CDD|176568 cd08631, PI-PLCc_delta4, Catalytic domain of metazoan
phosphoinositide-specific phospholipase C-delta4. This
subfamily corresponds to the catalytic domain present in
metazoan phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a
signaling enzyme that hydrolyzes the membrane
phospholipids phosphatidylinositol-4,5-bisphosphate
(PIP2) to generate two important second messengers in
eukaryotic signal transduction cascades, Inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which then phosphorylates other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. PLC-delta represents a
class of mammalian PI-PLC that has an N-terminal
pleckstrin homology (PH) domain, an array of EF hands, a
PLC catalytic core domain, and a C-terminal C2 domain.
This CD corresponds to the catalytic domain which is a
TIM barrel with two highly conserved regions (X and Y)
split by a highly degenerate linker sequence. There are
three PI-PLC-delta isozymes (1,3 and 4). Unlike
PI-PLC-delta 1 and 3, a putative nuclear export sequence
(NES) located in the EF-hand domain, which may be
responsible transporting PI-PLC-delta1 and 3 from the
cell nucleus, is not present in PI-PLC-delta4.
Experiments show PI-PLC-delta4 is required for the
acrosome reaction in fertilization.
Length = 258
Score = 27.6 bits (61), Expect = 3.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 17 VAKAARLKNDEPVIASVLNECSFDWQDFECRELP--LGD 53
VA+ A +D PVI S+ N C + Q + L LG+
Sbjct: 79 VAQYAFQVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117
>gnl|CDD|176569 cd08632, PI-PLCc_eta1, Catalytic domain of metazoan
phosphoinositide-specific phospholipase C-eta1. This
subfamily corresponds to the catalytic domain present in
metazoan phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a
signaling enzyme that hydrolyzes the membrane
phospholipids phosphatidylinositol-4,5-bisphosphate
(PIP2) to generate two important second messengers in
eukaryotic signal transduction cascades, Inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which then phosphorylates other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. PI-PLC-eta represents a
class of neuron-speific PI-PLC that has an N-terminal
pleckstrin homology (PH) domain, an array of EF hands, a
PLC catalytic core domain, a C2 domain, and a unique
C-terminal tail that terminates with a PDZ-binding
motif, a potential interaction site for other signaling
proteins. The PLC catalytic core domain is a TIM barrel
with two highly conserved regions (X and Y) split by a
highly degenerate linker sequence. PI-PLC-eta1 is a
neuron-specific enzyme and expressed in only nerve
tissues such as the brain and spinal cord. It may
perform a fundamental role in the brain.
Length = 253
Score = 26.9 bits (59), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 17 VAKAARLKNDEPVIASVLNECSFDWQ 42
+ K A +KN+ PVI S+ N CS Q
Sbjct: 79 INKYAFVKNEFPVILSIENHCSIQQQ 104
>gnl|CDD|176294 cd01218, PH_phafin2, Phafin2 Pleckstrin Homology (PH) domain.
Phafin2 Pleckstrin Homology (PH) domain. Phafin
contains a PH domain and a FYVE domain. PH domains
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. PH
domains also have diverse functions. They are often
involved in targeting proteins to the plasma membrane,
but few display strong specificity in lipid binding.
Any specificity is usually determined by loop regions or
insertions in the N-terminus of the domain, which are
not conserved across all PH domains. PH domains are
found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinsases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 104
Score = 26.8 bits (59), Expect = 7.0
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 203 GRILAGKSGVLVKMCKSQQDMR 224
GR+L G+ GVL KMC+ + R
Sbjct: 1 GRVLVGE-GVLTKMCRKKPKQR 21
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.138 0.394
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,204,003
Number of extensions: 164746
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 23
Length of query: 281
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 188
Effective length of database: 4,254,100
Effective search space: 799770800
Effective search space used: 799770800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.5 bits)