RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780768|ref|YP_003065181.1| hypothetical protein
CLIBASIA_03295 [Candidatus Liberibacter asiaticus str. psy62]
(281 letters)
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A
{Salmonella typhi} (A:)
Length = 347
Score = 34.6 bits (76), Expect = 0.014
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFC 55
M +LLI G G L +A A + + ++ L+ L +F
Sbjct: 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFV 55
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis} (A:)
Length = 330
Score = 34.6 bits (76), Expect = 0.015
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 2/102 (1%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFEC--RELPLGDFCVLR 58
M +LI G+G + + K + V+ L D L D LR
Sbjct: 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLR 60
Query: 59 SILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQ 100
+ Q NI ++ A + ++ +
Sbjct: 61 DVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLL 102
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman
fold, protein-NAD complex, sugar binding protein; HET:
NAD; 2.19A {Bordetella bronchiseptica} (A:)
Length = 333
Score = 33.3 bits (73), Expect = 0.034
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECR 47
MK++ I G + ++A+ + D+ V +
Sbjct: 21 MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPN 67
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR,
GALE, NAD, SYK, UDP, N- acetylglucosamine,
N-acetylgalactosamine, UDP-GLC; HET: NAD UD2; 2.10A
{Pseudomonas aeruginosa} (A:)
Length = 352
Score = 32.2 bits (70), Expect = 0.092
Identities = 7/65 (10%), Positives = 16/65 (24%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSI 60
K LI +G + + + + + V D + + + I
Sbjct: 27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFI 86
Query: 61 LHQYN 65
Sbjct: 87 QGDIR 91
>1j7g_A D-tyrosyl-tRNA(Tyr) deacylase; D-Tyr-tRNA(Tyr) deacylase,
structural genomics, hypothetical protein, structure 2
function project; 1.64A {Haemophilus influenzae rd KW20}
(A:)
Length = 144
Score = 30.5 bits (69), Expect = 0.24
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 170 GQSAVSIGGRVVALEGIEGTDS--MLQRIVDCRNNGRILAGKSGVLVKMCKSQQDMRADL 227
G++ IG ++ L G+E D+ ++ + N RI + ++ KM + Q + +L
Sbjct: 17 GETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDEND---KMNLNVQQAQGEL 73
Query: 228 PSIGAKTVQNVIKAG 242
+ T+ + G
Sbjct: 74 LIVSQFTLAADTQKG 88
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,
structural genomics, protein structure initiative; HET:
NAD; 1.87A {Archaeoglobus fulgidus} (A:1-166)
Length = 166
Score = 30.7 bits (67), Expect = 0.24
Identities = 10/86 (11%), Positives = 24/86 (27%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSI 60
M +++ G+G + +V N+ VI ++ + + ++
Sbjct: 1 MSLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFVNEAARLVKADLAADDIKDY 60
Query: 61 LHQYNIGRIVVAGAIDRRPNVQDLCF 86
L + A R
Sbjct: 61 LKGAEEVWHIAANPDVRIGAENPDEI 86
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, structural genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} (A:1-198)
Length = 198
Score = 30.2 bits (66), Expect = 0.33
Identities = 7/47 (14%), Positives = 14/47 (29%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECR 47
KR+LI G+G + ++ E + +
Sbjct: 27 RKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIG 73
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel,
hydrolase; 1.55A {Escherichia coli} (A:)
Length = 145
Score = 30.1 bits (68), Expect = 0.33
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 170 GQSAVSIGGRVVALEGIEGTDS--MLQRIVDCRNNGRILAGKSGVLVKMCKSQQDMRADL 227
G+ IG ++ L G+E D R+ + RI + G KM + Q +
Sbjct: 17 GEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEG---KMNLNVQQAGGSV 73
Query: 228 PSIGAKTVQNVIKAG 242
+ T+ + G
Sbjct: 74 LVVSQFTLAADTERG 88
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short
dehydrogenase reductase, NADPH, dihydroquercetin,
rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A
{Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
(D:)
Length = 337
Score = 29.8 bits (64), Expect = 0.36
Identities = 3/65 (4%), Positives = 14/65 (21%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSI 60
+ + + SG + ++ + + + ++
Sbjct: 5 SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKAD 64
Query: 61 LHQYN 65
L
Sbjct: 65 LADEG 69
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} (A:)
Length = 206
Score = 29.8 bits (65), Expect = 0.39
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSI 60
+K++ I +G A ++ V V + + + +GD +
Sbjct: 3 VKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADV 61
Query: 61 LHQYNIGRIVV 71
V+
Sbjct: 62 DKTVAGQDAVI 72
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain
dehydrogenase/reductase, rossmann fold, lyase; HET: NDP
GDP; 2.15A {Pseudomonas aeruginosa} (A:1-189)
Length = 189
Score = 29.2 bits (63), Expect = 0.65
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFEC 46
+ L+ +G Y+AK K W+ E
Sbjct: 14 TRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL 59
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine,
structural genomics, NPPSFA; 2.76A {Aquifex aeolicus
VF5} (A:)
Length = 148
Score = 27.8 bits (62), Expect = 1.6
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 170 GQSAVSIGGRVVALEGIEGTDS--MLQRIVDCRNNGRILAGKSGVLVKMCKSQQDMRADL 227
G+ SI + G+ D+ ++++V+ N RI + G K S D++ ++
Sbjct: 17 GKVVGSINEGLNVFLGVRKGDTEEDIEKLVNKILNLRIFEDERG---KFQYSVLDIKGEI 73
Query: 228 PSIGAKTVQNVIKAG 242
+ T+ +K G
Sbjct: 74 LVVSQFTLYANVKKG 88
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing,
DNA damage, DNA recombination, DNA repair, hydrolase,
magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
(A:1-229)
Length = 229
Score = 27.3 bits (60), Expect = 2.3
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 43 DFECRELPLGDFCVLR-------SILHQYNIGRIVVAGAIDRRPNVQDLCFSIKD 90
F+ R+L +GDF + + +G+ +V I R + DLC SI D
Sbjct: 50 TFDVRKLNVGDFLWVARERVTPVPGQLRPPVGKELVLDYIIERKRMDDLCGSIID 104
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA
FAD; 1.54A {Staphylococcus aureus} (A:1-113,A:251-315)
Length = 178
Score = 27.4 bits (60), Expect = 2.3
Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDF 54
M +++++ G+ A R + E I + + + +
Sbjct: 1 MPKIVVV-GAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVV 53
>2wm3_A NMRA-like family domain containing protein 1; unknown
function; HET: NAP NFL; 1.85A {Homo sapiens} PDB:
2wmd_A* 2exx_A* 3dxf_A 3e5m_A (A:)
Length = 299
Score = 27.2 bits (58), Expect = 2.4
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNEC--SFDWQDFECRELPLGDFC 55
K +++ G+G VA+ V N + + E+ GD
Sbjct: 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQD 61
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron} (A:)
Length = 227
Score = 27.2 bits (58), Expect = 2.6
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFEC 46
+K++++I SG + + A + E E +
Sbjct: 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLK 49
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase,
short-chain dehydrogenase/reductase, oxidoreductase;
HET: NAP; 1.80A {Clarkia breweri} (A:)
Length = 321
Score = 27.2 bits (58), Expect = 2.6
Identities = 8/55 (14%), Positives = 21/55 (38%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFC 55
M++++I G+G + ++ +A+ + I + + RE
Sbjct: 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGV 58
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2,
5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET:
ADP MPO; 1.05A {Escherichia coli} (A:1-125)
Length = 125
Score = 27.2 bits (60), Expect = 2.6
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSI 60
R++++ GSG L VA + E + + + + D LR +
Sbjct: 11 ATRVMLL-GSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRV 69
Query: 61 LHQYNIGRIVVAG 73
+ IV
Sbjct: 70 VELEKPHYIVPEI 82
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure,
transferase; 1.90A {Thermus thermophilus HB8} (A:24-146)
Length = 123
Score = 27.1 bits (60), Expect = 2.7
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 16/88 (18%)
Query: 64 YNIGRIVVAGAIDR------RPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLL 117
+ +G VA RP L + + L + +LV G A
Sbjct: 39 FEVGFRGVAATASDLLAKMGRPLGFTLGLFLPEDLEEGFV-LELVRGAAEA--------A 89
Query: 118 ESYGVSVVGAHEIV-PELLVQVGSLGTC 144
+ G ++G E+ + V
Sbjct: 90 KRLGAFLLGGDTNRGVEVALTVSGYALA 117
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich,
structural genomics, PSI, protein structure initiative;
1.50A {Pseudomonas aeruginosa PAO1} (A:)
Length = 215
Score = 26.7 bits (57), Expect = 3.6
Identities = 7/101 (6%), Positives = 22/101 (21%), Gaps = 7/101 (6%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSI 60
KR+L+ +G+ ++ + + + + L +
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKV------IAPARKALAEHPRLDNPVGPLAEL 58
Query: 61 LHQYNIGRIVV-AGAIDRRPNVQDLCFSIKDSLRISKMIWQ 100
L Q + + + +
Sbjct: 59 LPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGK 99
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR,
MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str}
(S:1-236)
Length = 236
Score = 26.6 bits (58), Expect = 4.2
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 7/105 (6%)
Query: 69 IVVAGAIDRRPNVQDLCFSIKDSLRISKMI----WQLVSGGNAAILKASIDLLESYGVSV 124
VV G I N + L I I +++ G A +
Sbjct: 122 AVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCAT--FGGVQAAKPNPTG 179
Query: 125 V-GAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELD 168
G ++ + L V+ ++ C PN + +A ELD
Sbjct: 180 AKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLKNKAAPELD 224
>3h8l_A NADH oxidase; membrane protein, complete form,
rossman-like fold, oxidoreductase; HET: FAD; 2.57A
{Acidianus ambivalens} PDB: 3h8i_A* (A:1-109,A:286-409)
Length = 233
Score = 26.3 bits (57), Expect = 4.6
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNE 36
M ++L++ G A + V+N+
Sbjct: 1 MTKVLVL-GGRFGALTAAYTLKRLVGSKADVKVINK 35
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family
transcriptional regulator streptomyces, structural
genomics, PSI-2; 2.20A {Streptomyces coelicolor}
(A:1-88)
Length = 88
Score = 26.2 bits (58), Expect = 5.7
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 107 AAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAA 157
++ ++DLL+ G+ V + L V+ SL KRD+L A
Sbjct: 28 ETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRT---KRDLLTA 75
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase 2; structural genomics, PSI-2,
protein structure initiative; 2.30A {Listeria
monocytogenes str} (A:)
Length = 246
Score = 25.9 bits (55), Expect = 5.7
Identities = 18/212 (8%), Positives = 49/212 (23%), Gaps = 27/212 (12%)
Query: 1 MKRLLII---AGSG--MLPYYVAKAARLKNDEPVIASVLNECSFDW-------------- 41
M + G G M + K N +P+I + + +
Sbjct: 1 MSLIYAQILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWM 60
Query: 42 -----QDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISK 96
+ ++ + I + + ++
Sbjct: 61 NHAEDNIKKYISDDRIVVIEGGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTH 120
Query: 97 MIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILA 156
I + + + HE++ ++ V+ P + +
Sbjct: 121 RIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIPVRDHMYQGQTPQSFNMKKVFN 180
Query: 157 AMKSAEA---LSELDVGQSAVSIGGRVVALEG 185
++ D + + G V ++G
Sbjct: 181 HYQNLTPEKKQILTDACKICLLAGDDVKLVKG 212
>2guh_A Putative TETR-family transcriptional regulator;
helix-turn-helix, TETR fold, structural genomics, PSI,
protein structure initiative; HET: MSE; 1.52A
{Rhodococcus SP} (A:)
Length = 214
Score = 25.9 bits (56), Expect = 6.1
Identities = 6/52 (11%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 107 AAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAM 158
+ I+ A+ + + +I + V + + K + A+
Sbjct: 42 SLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGS---KEQLFDAL 90
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} (A:)
Length = 253
Score = 26.0 bits (55), Expect = 6.1
Identities = 9/55 (16%), Positives = 21/55 (38%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFC 55
+ +L+ SG V K + +D+ V ++ + ++ +GD
Sbjct: 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDIT 58
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A* (A:)
Length = 430
Score = 25.8 bits (54), Expect = 6.2
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIA 31
M + +++ G G+ A R + I
Sbjct: 1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKIT 31
>3klb_A Putative flavoprotein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
(A:)
Length = 162
Score = 25.6 bits (55), Expect = 7.1
Identities = 9/134 (6%), Positives = 32/134 (23%), Gaps = 26/134 (19%)
Query: 1 MKRLLIIAGSGMLPY-YVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRS 59
+++L+ S A +A++ ++ + D+
Sbjct: 4 DRKILVAYFS---CSGVTKAVAEK------LAAITGADLYEIKPEVPYTEADLDW----- 49
Query: 60 ILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMI---WQLVSGGNAAILKASIDL 116
+ + R + +++ + + I+ ++
Sbjct: 50 ------NDKKSRSSVEXRDALSRPAISGTLFHPEKYEVLFVGFPVWWYIAPTIINTFLES 103
Query: 117 LESYG--VSVVGAH 128
+ G V
Sbjct: 104 YDFAGKIVVPFATS 117
>3egq_A TETR family transcriptional regulator; NP_070644.1,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus
fulgidus} (A:1-69)
Length = 69
Score = 25.3 bits (56), Expect = 9.5
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 107 AAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAM 158
I++A++ L V EI E V + + K+ +L
Sbjct: 7 VRIIEAALRLYXKKPPHEVSIEEIAREAKVSKSLIFYHFES---KQKLLEEA 55
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.138 0.394
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,034,347
Number of extensions: 87030
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 54
Length of query: 281
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 194
Effective length of database: 2,015,014
Effective search space: 390912716
Effective search space used: 390912716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)