HHsearch results for GI: 254780770 and protein with PDBid: 3bnv_A
>3bnv_A CJ0977; virulence factor, hot-DOG fold, flagella, unknown function; HET: MSE; 2.60A {Campylobacter jejuni}
Probab=98.34 E-value=4.5e-05 Score=49.44 Aligned_cols=134 Identities=17% Similarity=0.127 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHCCCCCCEE--EEEEEEEEECCCEEEEEEEECCCCHHH-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 28641898998479997505--478999984697499999826888313-134799950225669999863463454432
Q gi|254780770|r 8 LDAKDIVELMRFLPHRYPFL--LVDKVVNIQRDESAIGIKNVTFNEPHF-MGHFPGRPVMPGVLILEGMAQTAGAICAIH 84 (161)
Q Consensus 8 l~~~~~~eI~~~lPhr~Pfl--~ID~i~~~~~g~~~~g~k~v~~~e~ff-~gHFp~~PvmPGvLliE~maQ~~~~l~~~~ 84 (161)
++.-++..|.+-+=..+||- +--+++++++| ++.....++. .+. +. ..-+--|++ =+++-+++.++.
T Consensus 13 ~s~e~~~~i~~~~~~~~~~~~~Lg~elve~~~G-~a~~~l~~~~--~~~~n~---~G~vHGG~~--~alaD~a~~~a~-- 82 (152)
T 3bnv_A 13 ASAEDISRVRAELLTCPELNTSLAGTIIEIDKN-YAKSILITTS--EMVADD---QGLIFDAFI--FAAANYVAQASI-- 82 (152)
T ss_dssp SCHHHHHHHHTTCCSSTTCCHHHHCEEEEEETT-EEEEEEECCG--GGBSST---TCBBCHHHH--HHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHCEEEEEEECC-EEEEEEECCH--HHHCCC---CCEECHHHH--HHHHHHHHHHHC--
T ss_conf 799999999986443882345408699999799-8999998489--992489---980715686--789999977542--
Q ss_pred CCCCCCEEEEEEECCCCEEEEEEEECCEEEEEEEEE-EEECCEEEEEEEEEECCEEEEEEEEEEEEECCCCCC
Q ss_conf 997763026775236413600221288899999999-720777999999999999999899999984452002
Q gi|254780770|r 85 NGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKV-RNRVDLWKFQCCAKVENTVVAEAEICAMVMHEKKEK 156 (161)
Q Consensus 85 ~~~~~~~~~~l~~i~~~kF~~~V~PGd~L~i~~~i~-~~~~~~~~~~~~~~v~~~~va~a~l~~~i~~~~~e~ 156 (161)
.. . .....--++.|.+|+.+||+|+.+++.. +.++..+.+.++++.+++.|++|++++++.+++.-+
T Consensus 83 ~~--~---~~vT~~~~i~fl~p~~~G~~l~a~a~vi~~~~~~~~~v~v~~~~~~~~V~~gtf~~~v~~k~~~~ 150 (152)
T 3bnv_A 83 NK--E---FSVIIGSKCFFYAPLKLGDVLELEAHALFDETSKKRDVKVVGHVKEIKMFEGTIQVVSTDEHIFK 150 (152)
T ss_dssp CC--S---SEEEEEEEEEECSCCBTTCEEEEEEEECCCSSCSEEEEEEEEEETTEEEEEEEEEEEECSSCTTC
T ss_pred CC--C---CCCHHHEEEEECCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCEEEEEEEEEEEEECCCCCC
T ss_conf 68--8---70511100156036789999999999999899749999999988999999999999997660002