RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780770|ref|YP_003065183.1| (3R)-hydroxymyristoyl-ACP
dehydratase [Candidatus Liberibacter asiaticus str. psy62]
(161 letters)
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase;
lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A*
2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A*
3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Length = 171
Score = 148 bits (376), Expect = 4e-37
Identities = 63/147 (42%), Positives = 92/147 (62%), Gaps = 5/147 (3%)
Query: 12 DIVELMRFLPHRYPFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPGRPVMPGVLILE 71
I +++ LPHRYP LLVD++ +Q ++ + KN+TFNE F GHFP +P+ PGVLI+E
Sbjct: 25 FIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVE 84
Query: 72 GMAQTAGAICAIHNGFDQYAP-----PYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDL 126
GMAQ+ G + Y M+IDK +FR PV PGDRLEYH+ ++++ +
Sbjct: 85 GMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMI 144
Query: 127 WKFQCCAKVENTVVAEAEICAMVMHEK 153
W+ A+V+ VVAEAE+ AM+ +
Sbjct: 145 WQVGGTAQVDGKVVAEAELKAMIAERE 171
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty
acid biosynthesis, hot DOG fold, lyase; 2.50A
{Pseudomonas aeruginosa} SCOP: d.38.1.6
Length = 168
Score = 140 bits (353), Expect = 2e-34
Identities = 65/141 (46%), Positives = 84/141 (59%), Gaps = 4/141 (2%)
Query: 12 DIVELMRFLPHRYPFLLVDKVVNIQRD-ESAIGIKNVTFNEPHFMGHFPGRPVMPGVLIL 70
DI E+ +LPHRYPFLLVD+VV + + + KNV+ NEP F GHFP P+MPGVLI+
Sbjct: 23 DINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLII 82
Query: 71 EGMAQTAGAICAIHNGFDQYAP--PYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWK 128
E MAQ AG + Y + DK RFR+PV PGD+L+ H + + +WK
Sbjct: 83 EAMAQAAGILGFKMLDVKPADGTLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWK 142
Query: 129 FQCCAKVENTVVAEAEI-CAM 148
F C A V++ V AEI CA
Sbjct: 143 FDCHATVDDKPVCSAEIICAE 163
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; FABZ, hot
DOG fold, cytoplasm, lipid A biosynthesis, lipid
synthesis; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Length = 146
Score = 138 bits (348), Expect = 7e-34
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 3/144 (2%)
Query: 12 DIVELMRFLPHRYPFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPGRPVMPGVLILE 71
D++++ LPHRYPFLLVDK+ ++ E +G KN++ ++ FMGHFPG P+ PGVLILE
Sbjct: 3 DVMQIQEILPHRYPFLLVDKITELKVKEVVLGYKNISISDHVFMGHFPGHPIYPGVLILE 62
Query: 72 GMAQTAGAICAIHNGF---DQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWK 128
GMAQT G + + Y ID A+FR PV PGDRL+Y ++ V+NR ++W
Sbjct: 63 GMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVRPGDRLDYEMSVVKNRGNMWI 122
Query: 129 FQCCAKVENTVVAEAEICAMVMHE 152
F+ A V+ +VAEAE+ AM++ +
Sbjct: 123 FKGQAFVDGNLVAEAELKAMIVDK 146
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP
dehydratase, fatty acid biosynthesis, SAD phasing,
lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB:
1zhg_A 2oki_A 2okh_A
Length = 154
Score = 125 bits (316), Expect = 3e-30
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
Query: 12 DIVELMRFLPHRYPFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPGRPVMPGVLILE 71
DI ++ + LPHRYPFLLVDKV+ +Q +++ IG+K V+ NEP F GHFP + +MPGVL +E
Sbjct: 12 DIEDIKKILPHRYPFLLVDKVIYMQPNKTIIGLKQVSTNEPFFNGHFPQKQIMPGVLQIE 71
Query: 72 GMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVN--KVRNRVDLWKF 129
+AQ AG +C + + +D R++KPV PGD L N ++ + + K
Sbjct: 72 ALAQLAGILCLKSDDSQKNNLFLFAGVDGVRWKKPVLPGDTLTMQANLISFKSSLGIAKL 131
Query: 130 QCCAKVENTVVAEAEICAMVM 150
V VV +
Sbjct: 132 SGVGYVNGKVVINISEMTFAL 152
>2cf2_C Fatty acid synthase, DH domain; transferase, fatty acid metabolism,
fatty acid biosynthesis, multienzyme; 4.30A {Sus scrofa}
SCOP: d.38.1.2
Length = 342
Score = 101 bits (253), Expect = 8e-23
Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 14/135 (10%)
Query: 20 LPHRYPFLLVDKVVNIQRDESAIG------IKNVTFNEPHFMGHFPGRPVMPGVLILEGM 73
LP L++D+VV + ++ + F HF G PVMPG L L+ M
Sbjct: 199 LPAP-NMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAM 257
Query: 74 AQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGD---RLEYHVNKV-RNRVDLWKF 129
Q G + + + +F V P H ++ R+ +
Sbjct: 258 WQLVGFYLGWL---GGEGKGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLA 314
Query: 130 QCCAKVENTVVAEAE 144
V+ ++ A
Sbjct: 315 DGEVLVDGRLIYTAS 329
Score = 86.6 bits (214), Expect = 3e-18
Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 15/152 (9%)
Query: 20 LPHRYPFLLVDKVVNIQRDE------SAIGIKNVTFNEPHFMGHFPGRPVMPGVLILEGM 73
LP L++D+VV + ++ + F HF G PVMPG L L+ M
Sbjct: 28 LPAP-NMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAM 86
Query: 74 AQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGD-RLEYHVN---KVRNRVDLWKF 129
Q G G + + + + +F V P ++ Y ++ V R+ +
Sbjct: 87 WQLVGFYLGWLGGEGKG---RALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLA 143
Query: 130 QCCAKVENTVVAEAE-ICAMVMHEKKEKNESH 160
V+ ++ A + + + +
Sbjct: 144 DGEVLVDGRLIYTASDLKVGLFQDTSAFVDKR 175
>1mka_A Beta-hydroxydecanoyl thiol ester dehydrase; fatty acid
biosynthesis; HET: DAC; 2.00A {Escherichia coli} SCOP:
d.38.1.2 PDB: 1mkb_A
Length = 171
Score = 99 bits (249), Expect = 2e-22
Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 14/135 (10%)
Query: 20 LPHRYPFLLVDKVVNIQRDESAIGI------KNVTFNEPHFMGHFPGRPVMPGVLILEGM 73
LP L++D+VV + ++ + F HF G PVMPG L L+ M
Sbjct: 28 LPAP-NMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAM 86
Query: 74 AQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGD---RLEYHVNKVRNR-VDLWKF 129
Q G G + + + + +F V P H ++ NR + +
Sbjct: 87 WQLVGFYLGWLGGEGK---GRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLA 143
Query: 130 QCCAKVENTVVAEAE 144
V+ ++ A
Sbjct: 144 DGEVLVDGRLIYTAS 158
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp.
atroseptica (pectobacterium atrosepticum), structural
genomics; 2.50A {Pectobacterium atrosepticum}
Length = 129
Score = 95.9 bits (238), Expect = 4e-21
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 10/123 (8%)
Query: 25 PFLLVDKVVNIQRDESAI-GIKNVTFNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAI 83
P LV V + S + + V + F GHF G+P++PGV L+ + A +
Sbjct: 3 PVELVRHDVKKTDETSQVELMLQVDPDLFWFNGHFTGQPLLPGVAQLDWVMHYATTVL-- 60
Query: 84 HNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDL-WKFQCCAKVENTVVAE 142
+SI+ +F++P+ PG L + + L + + +
Sbjct: 61 ------AQGWTFLSIENIKFQQPILPGKTLRLVLIWHAGKQSLTFSYSILEGDTERTASS 114
Query: 143 AEI 145
+I
Sbjct: 115 GKI 117
>3kh8_A MAOC-like dehydratase; hot DOG domain, lyase; 2.00A {Phytophthora
capsici}
Length = 332
Score = 53.2 bits (127), Expect = 2e-08
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 6/107 (5%)
Query: 49 FNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVF 108
+N H + V IL G+ A A+ F S + RF P F
Sbjct: 229 YNSLHIDPEI-AKSVGFKQPILHGLCSMGVASRALFKQFCGGDVARFKS-IRVRFSSPCF 286
Query: 109 PGDRLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAEICAMVMHEKKE 155
PG+ ++ + + + FQ K V+ + V +
Sbjct: 287 PGETIQTRMWQEGSGK--VLFQAVVKERGAVIVDGG--EFVYTQDAS 329
>1s9c_A Peroxisomal multifunctional enzyme type 2; hot-DOG fold, hydratase
2 motif, lyase; 3.00A {Homo sapiens} SCOP: d.38.1.4
d.38.1.4 PDB: 2cdh_S
Length = 298
Score = 50.1 bits (119), Expect = 2e-07
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 48 TFNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPV 107
+N H +F ++ G KARF KPV
Sbjct: 193 DWNPLHIDPNFASLAGFDKPILHGLCTF--GFSARRVLQQFADNDVSRFKAVKARFAKPV 250
Query: 108 FPGDRLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAEICAMV 149
+PG L+ + K NR+ FQ + +V +
Sbjct: 251 YPGQTLQTEMWKEGNRI---HFQTKVQETGDIVISNAYVDLA 289
>1pn2_A Peroxisomal hydratase-dehydrogenase-epimerase; hot-DOG fold,
hydratase 2 motif, lyase; 1.95A {Candida tropicalis}
SCOP: d.38.1.4 d.38.1.4 PDB: 1pn4_A*
Length = 280
Score = 40.8 bits (95), Expect = 2e-04
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 17/115 (14%)
Query: 43 GIKNVTFNEPHFMGHFP-GRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKA 101
G +N +P+F +P++ G+ +A A+ F++ KA
Sbjct: 181 GDRNPLHIDPNFAKGAKFPKPILHGMCT---YGLSAKALIDKFGMFNEI---------KA 228
Query: 102 RFRKPVFPGDRLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAEICAMVMHEKKEK 156
RF VFPG+ L K + D FQ T+ A+ + K K
Sbjct: 229 RFTGIVFPGETLRVLAWKESD--DTIVFQTHVVDRGTIAINNA--AIKLVGDKAK 279
>3ir3_A HTD2, 3-hydroxyacyl-thioester dehydratase 2; structural genomics,
structural genomics consortium, SGC, lyase; 1.99A {Homo
sapiens}
Length = 148
Score = 39.7 bits (92), Expect = 3e-04
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 49 FNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVF 108
N H F + G I+ G+ + +L + F P++
Sbjct: 43 VNPLHLNEDF-AKHTKFGNTIVHGVLINGLISALLGTKMPGPGCVFLS--QEISFPAPLY 99
Query: 109 PGDRLEYH--VNKVRNRVDLWKFQCCAKVENTVVAEAEICAMVMHEKKEK 156
G+ + V K++ + + C V E VM + K
Sbjct: 100 IGEVVLASAEVKKLKRFIAIIAVSCSVIESKKTVMEGW--VKVMVPEASK 147
>3khp_A MAOC family protein; ssgcid, NIH, niaid, decode, university of
washington, emerald biostructures, SBRI, dehydrogenase;
HET: TLA; 2.30A {Mycobacterium tuberculosis H37RV}
Length = 311
Score = 37.8 bits (87), Expect = 0.001
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 14/91 (15%)
Query: 60 GRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNK 119
+P++ G+ G ++ ARF KPVFPG+ L + +
Sbjct: 225 PKPILHGLCT-------YGVAGRALVAELGGGVAANITSIAARFTKPVFPGETLSTVIWR 277
Query: 120 VRNRVDLWKFQCCAKVEN-----TVVAEAEI 145
F+ + V+ + +
Sbjct: 278 TEP--GRAVFRTEVAGSDGAEARVVLDDGAV 306
>1q6w_A Monoamine oxidase regulatory protein, putative; structural
genomics, nysgxrc T805, hot DOG fold; 2.81A
{Archaeoglobus fulgidus dsm 4304} SCOP: d.38.1.4
Length = 161
Score = 37.7 bits (87), Expect = 0.001
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 60 GRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHV-- 117
G+P+ G+L+L + + +D + I RF +PVF GD +
Sbjct: 62 GKPIAQGMLVLSIALGMVDQVILSN--YDVSSVIAFFGIKDVRFLRPVFIGDTIAASAEV 119
Query: 118 ---NKVRNRVDLWKFQCCAKVEN-TVVAEAEICAMV 149
+ + ++ K + +V A A++
Sbjct: 120 VEKQDFDEKSGVVTYKLEVKNQRGELVLTALYSALI 155
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase;
polyhydroxyalkanoate, aeromonas caviae, the hydratase 2
motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Length = 134
Score = 37.7 bits (87), Expect = 0.001
Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 8/105 (7%)
Query: 49 FNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVF 108
FN H F I+ GM + + YL F+ PVF
Sbjct: 33 FNPLHLDPAFAATTAFER-PIVHGMLLASLFSGLLGQQLPGKGSIYLG--QSLSFKLPVF 89
Query: 109 PGDRLEYH--VNKVRNRVDLWKFQCCAKVEN-TVVAEAEICAMVM 150
GD + V +R + + + E A+V
Sbjct: 90 VGDEVTAEVEVTALREDKPIATLTTRIFTQGGALAVTGE--AVVK 132
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structural
genomics, PSI-2, protein structure initiative; 2.30A
{Rhodospirillum rubrum atcc 11170}
Length = 154
Score = 34.4 bits (78), Expect = 0.012
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 8/106 (7%)
Query: 52 PHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGD 111
P + R + G L G A + + A + + + + P PGD
Sbjct: 37 PFHLDEEAARHSLFGGLAASGWHTAAITMRLLVTSGLPLAQGIIGAGTELSWPNPTRPGD 96
Query: 112 RLEYHV-------NKVRNRVDLWKFQCCAKVEN-TVVAEAEICAMV 149
L +K R + Q + VV + +V
Sbjct: 97 ELHVETTVLAITPSKSRPDRAIVTCQSDTLNQRGEVVQRSTAKVVV 142
>2b3n_A Hypothetical protein AF1124; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.25A {Archaeoglobus fulgidus} SCOP:
d.38.1.4 PDB: 2b3m_A 3k67_A
Length = 159
Score = 32.4 bits (73), Expect = 0.051
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 5/101 (4%)
Query: 49 FNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVF 108
N HF F + G + + + ++ R+ PV
Sbjct: 63 LNPVHFDEDFASKTRFGGR-----VVHGMLTTSLVSAAVARLPGTVVLLEQSFRYTSPVR 117
Query: 109 PGDRLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAEICAMV 149
GD + + + + VVAE + ++
Sbjct: 118 IGDVVRVEGVVSGVEKNRYTIDVKCYTGDKVVAEGVVKVLI 158
>2prx_A Thioesterase superfamily protein; ZP_00837258.1, structural
genomics, joint center for structural genomics, JCSG;
1.50A {Shewanella loihica pv-4}
Length = 160
Score = 30.8 bits (69), Expect = 0.14
Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 9/110 (8%)
Query: 51 EPHFMGHFPGRPVMPGVL------ILEGMAQTAGAICAIHNGFDQYAPPYLMSID-KARF 103
+P PG V G++ G A A G PP ++ +
Sbjct: 47 KPFHTAI-PGF-VYGGLIASLIDCHGTGSASAAAQRALEQAGEQLDEPPRFVTAALNIDY 104
Query: 104 RKPVFPGDRLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAEICAMVMHEK 153
P G LE + + + + A + A+ M E
Sbjct: 105 LAPTPMGVELELVGEIKEVKPRKVVVEIALSADGKLCARGHMVAVKMPET 154
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 31.0 bits (70), Expect = 0.15
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 64 MPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKV--R 121
+PG I GM T+ A+ ++ + + V P D + + V
Sbjct: 1584 LPGT-ITHGM-YTSAAVRSLVETWAAENNIGRVRSYHVNMVGMVLPNDAITVKLEHVGMI 1641
Query: 122 NRVDLWKFQCCAKVENTVV--AEAEI 145
+ K K + V EAE+
Sbjct: 1642 AGRKIIKVDARNKDTDESVLQGEAEV 1667
>2bi0_A Hypothetical protein RV0216; conserved hypothetical, hotdog-fold,
structural proteomics in europe, spine, structural
genomics; 1.9A {Mycobacterium tuberculosis} SCOP:
d.38.1.4 d.38.1.4
Length = 337
Score = 30.8 bits (69), Expect = 0.17
Identities = 15/76 (19%), Positives = 21/76 (27%), Gaps = 10/76 (13%)
Query: 53 HFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDR 112
H GR ++ G + G A L + PV GD
Sbjct: 237 HHDWRVSGRRLVYGGHTI-------GLALAQATRLLPNLATVL-DWESCDHTAPVHEGDT 288
Query: 113 L--EYHVNKVRNRVDL 126
L E H+ + D
Sbjct: 289 LYSELHIESAQAHADG 304
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 30.3 bits (68), Expect = 0.21
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 22/51 (43%)
Query: 79 AICAIHNGFDQY---APP--------YL------MSIDKAR--F--RKPVF 108
I ++ NG PP L +D++R F RK F
Sbjct: 367 EI-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Score = 29.1 bits (65), Expect = 0.51
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 17 MRFLPHRYPF---LLVDKVVNIQRDESAIGIKNVTF 49
RFLP PF LLV I +D + NV+F
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKD---LVKNNVSF 450
Score = 26.8 bits (59), Expect = 2.2
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 30/104 (28%)
Query: 37 RDESAIGIKNVTFNEP-----HFMGHFPGRPV------MPGVLILEGMAQTAGAICAI-- 83
+D I ++ N P HF G G+ + M I++G +T I
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGE-KGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 84 HN---------GF---DQYAPPYLMSIDKARFR----KPVFPGD 111
H+ G Q+ P L ++KA F K + P D
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic
membrane protein, sensory transduction, vision,
isomerase, non-heme iron protein; 1.90A {Bos taurus}
PDB: 3fsn_A
Length = 533
Score = 29.8 bits (66), Expect = 0.32
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 3 SDLACLDAKDIVELMRF-LPHRYPF 26
+ L L+AKD+ E+ R + P
Sbjct: 500 AYLLILNAKDLSEVARAEVEINIPV 524
>2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in europe,
spine, structural genomics; 1.8A {Mycobacterium
tuberculosis} SCOP: d.38.1.4
Length = 151
Score = 29.0 bits (64), Expect = 0.53
Identities = 17/99 (17%), Positives = 25/99 (25%), Gaps = 4/99 (4%)
Query: 46 NVTFNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRK 105
+P P + + + G ++K RF
Sbjct: 42 QWIHVDPERAAAGPFGTTIAHGFMTLALLPRLQHQMYTVKGVKLAI---NYGLNKVRFPA 98
Query: 106 PVFPGDRLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAE 144
PV G R+ + DL A V TV E
Sbjct: 99 PVPVGSRVRATS-SLVGVEDLGNGTVQATVSTTVEVEGS 136
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1; HET:
MSE; 1.81A {Vibrio parahaemolyticus rimd 2210633}
Length = 497
Score = 28.6 bits (63), Expect = 0.69
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 47 VTFNEPHFMGHFPGRPVMPGVL 68
+ P + H P+MP V
Sbjct: 96 IFTQHPDCIAHLHTPPLMPAVA 117
>3kuv_A Fluoroacetyl coenzyme A thioesterase; fluoroacetyl-COA thioesterase
FLK, hot DOG folding, thioeste hydrolase; 1.50A
{Streptomyces cattleya} PDB: 3kuw_A 3kvu_A* 3kv7_A
3kv8_A 3kvz_A* 3kw1_A* 3kx7_A 3kx8_A 3kvi_A
Length = 139
Score = 28.4 bits (63), Expect = 0.69
Identities = 12/119 (10%), Positives = 28/119 (23%), Gaps = 9/119 (7%)
Query: 47 VTFNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKP 106
V P V ++ M A + + + + +
Sbjct: 23 VRHLYPESPEFAEFPEVFASGFMVGLMEWACVRAMAPYLEPGEGSLGTAICV---THTAA 79
Query: 107 VFPGDRLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAEI-CAMVMHEK-----KEKNES 159
PG + ++ A + A++ EK ++K +
Sbjct: 80 TPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTPA 138
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta
propeller, abscisic acid, non iron, oxidoreductase;
3.20A {Zea mays}
Length = 529
Score = 28.5 bits (63), Expect = 0.70
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 3 SDLACLDAKDIVELMRF-LPHRYPF 26
S+L ++A D+ LP R PF
Sbjct: 488 SELLVVNAADMRLEATVQLPSRVPF 512
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin
B6, lyase; HET: PLP 142; 2.25A {Sus scrofa} SCOP:
c.67.1.6 PDB: 1js6_A*
Length = 486
Score = 27.8 bits (61), Expect = 1.1
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 47 VTFNEPHFMGHFPGRPVMPGVL 68
++ P+F +FP P +L
Sbjct: 69 THWHSPYFFAYFPTASSYPAML 90
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 27.9 bits (61), Expect = 1.2
Identities = 3/22 (13%), Positives = 4/22 (18%)
Query: 47 VTFNEPHFMGHFPGRPVMPGVL 68
V P F +
Sbjct: 104 VKTGHPRFFNQLFSGLDPHALA 125
>3b7k_A Acyl-coenzyme A thioesterase 12; hotdog fold, structural genomics,
structural genomics consortium, SGC, cytoplasm, fatty
acid metabolism, hydrolase; HET: COA; 2.70A {Homo
sapiens}
Length = 333
Score = 27.7 bits (61), Expect = 1.2
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 69 ILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVR 121
I+ M A + A P+L S+D +FR P GDRL +
Sbjct: 222 IMAWMETVATISASRLCW----AHPFLKSVDMFKFRGPSTVGDRLVFTAIVNN 270
Score = 27.7 bits (61), Expect = 1.4
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 10/96 (10%)
Query: 69 ILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWK 128
+L+ + TA H G S+D +F + G + R +
Sbjct: 48 LLKWIDTTACLAAEKHAG----VSCVTASVDDIQFEETARVGQVITIKAKVTRAFSTSME 103
Query: 129 FQCCAKVEN------TVVAEAEICAMVMHEKKEKNE 158
V++ +V+ A + KEK
Sbjct: 104 ISIKVMVQDMLTGIEKLVSVAFSTFVAKPVGKEKIH 139
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 27.9 bits (62), Expect = 1.2
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 100 KARFRKPVFPGDRLEYHVNKVRNRVD---LWKFQCCAKVENTV-VAEAEI 145
+F V P L+ + V ++ L KF+ + + V EAEI
Sbjct: 1609 TCQFVDMVLPNTALKTSIQHVG-MINGRKLIKFETRNEDDVVVLTGEAEI 1657
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 27.5 bits (60), Expect = 1.4
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 47 VTFNEPHFMGHFPGRPVMPGVL 68
V P F + G+
Sbjct: 88 VRTGHPRFFNQLSTGLDIIGLA 109
>2gvh_A AGR_L_2016P; 15159470, acyl-COA hydrolase, structural genomics,
joint center for structural genomics, JCSG; 2.50A
{Agrobacterium tumefaciens str} SCOP: d.38.1.1 d.38.1.1
Length = 288
Score = 27.7 bits (61), Expect = 1.4
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 66 GVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVR 121
G L M + A P S ++ FR+P G +E+ V+
Sbjct: 48 GGTGLALMDRVAFIAATRFGR----TPFVTASCERIDFRQPARIGHIVEFTARPVK 99
Score = 27.3 bits (60), Expect = 1.6
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 63 VMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVR 121
M G + M + A + + G L S ++ F + + G+ +E + R
Sbjct: 176 RMFGGEAIAYMTKAAFVAASRYCG----KLVVLASSERIDFARAIEIGEIVEAQAHVER 230
>1ixl_A Hypothetical protein PH1136; alpha+beta, hot-DOG-fold, structural
genomics, unknown function; 1.94A {Pyrococcus
horikoshii} SCOP: d.38.1.5
Length = 131
Score = 27.2 bits (60), Expect = 1.7
Identities = 14/75 (18%), Positives = 25/75 (33%)
Query: 79 AICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWKFQCCAKVENT 138
+ P ++ + RF KPV GD+L + + + E
Sbjct: 53 GLADYAAMLAVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEE 112
Query: 139 VVAEAEICAMVMHEK 153
VV E + V+ +
Sbjct: 113 VVLEGKFYCYVLEKH 127
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 26.6 bits (58), Expect = 2.6
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 47 VTFNEPHFMGHFPGRPVMPGVL 68
++ P F +FP P ++
Sbjct: 69 THWHSPKFHAYFPTANSYPAIV 90
>3hrq_A PKS, aflatoxin biosynthesis polyketide synthase; hot-DOG fold,
iterative type I PKS, norsolorinic acid, product
template domain; HET: PLM; 1.80A {Aspergillus
parasiticus} PDB: 3hrr_A*
Length = 357
Score = 26.0 bits (56), Expect = 3.9
Identities = 9/57 (15%), Positives = 14/57 (24%), Gaps = 5/57 (8%)
Query: 60 GRPVMPGVLILEGMAQTAGAICAIH---NGFDQYAPPYLMSIDKARFRKP-VFPGDR 112
G P+ + +A G A L+ + K V G
Sbjct: 46 GIPLCTPSFYAD-IAMQVGQYSMQRLRAGHPGAGAIDGLVDVSDMVVDKALVPHGKG 101
>2cwz_A Thioesterase family protein; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.85A {Thermus thermophilus HB8} SCOP: d.38.1.7
Length = 141
Score = 25.5 bits (56), Expect = 5.5
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 101 ARFRKPVFPGDRLEYHVNKVRNRVDLWKFQCCAKVEN-TVVAEAEICAMVMHEKK 154
AR PG R+ + + + A E ++ +++ + K
Sbjct: 68 ARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNELGDLIGVGRTEQVILPKAK 122
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid
cleavage, retinal formation, oxidoreductase,
dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB:
2bix_A*
Length = 490
Score = 25.2 bits (54), Expect = 6.7
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 3 SDLACLDAKDIVELMR---FLPHRYPF 26
S+L LDA+DI L H P+
Sbjct: 455 SELVILDAQDITAPAIATLKLKHHIPY 481
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.325 0.140 0.438
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,423,299
Number of extensions: 63454
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 48
Length of query: 161
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 76
Effective length of database: 3,632,490
Effective search space: 276069240
Effective search space used: 276069240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)