HHsearch alignment for GI: 254780771 and conserved domain: COG1208
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].
Probab=99.52 E-value=2.3e-14 Score=96.77 Aligned_cols=105 Identities=36% Similarity=0.521 Sum_probs=77.4
Q ss_pred EEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00110011232033112210000000233210023322023310024420100000232134454335566653110444
Q gi|254780771|r 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHI 216 (347)
Q Consensus 137 I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~ 216 (347)
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~------------------- 312 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIG------------------- 312 (358)
T ss_pred CCC-EEEECCEEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEEECCCEECCCCEEC-------------------
T ss_conf 662-388589498269789888486898789999888998778754887787988888882-------------------
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEE
Q ss_conf 32000024444544443322222211111222111234444650357718865556503636569729730687837859
Q gi|254780771|r 217 GRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK 296 (347)
Q Consensus 217 G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ 296 (347)
T Consensus 313 -~sIi~~~~~ig~-~---------------------------------~-~-----------i~d-~~~g~~~~i~~g~~ 344 (358)
T COG1208 313 -DSIIGENCKIGA-S---------------------------------L-I-----------IGD-VVIGINSEILPGVV 344 (358)
T ss_pred -CEEECCCCEECC-C---------------------------------C-E-----------EEE-EEECCCEEECCCEE
T ss_conf -069818859998-6---------------------------------1-5-----------701-58636608627618
Q ss_pred ECCCCEECCCCEE
Q ss_conf 8888898625326
Q gi|254780771|r 297 IGDNVQIASKSGV 309 (347)
Q Consensus 297 ig~~~~i~a~s~v 309 (347)
T Consensus 345 ~~~~~~~~~~~~~ 357 (358)
T COG1208 345 VGPGSVVESGEIE 357 (358)
T ss_pred ECCCCCCCCCCCC
T ss_conf 4786061576303