HHsearch alignment for GI: 254780771 and conserved domain: TIGR01852
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=100.00 E-value=0 Score=344.73 Aligned_cols=197 Identities=28% Similarity=0.400 Sum_probs=174.4
Q ss_pred CCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCC
Q ss_conf 33100156532334420000110011232033112210000000233210023322023310024420100000232134
Q gi|254780771|r 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGN 198 (347)
Q Consensus 119 I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~ 198 (347)
T Consensus 1 IHPTA~ie~gA~iG~~V~iGPf~~v~~~V~ig~g~~l~shV~i~G~T~iG~~~~i~p-----------------~A~iG~ 63 (257)
T TIGR01852 1 IHPTAIIEPGAEIGEDVEIGPFCIVGPGVKIGDGVELKSHVVIEGHTTIGEGTKIFP-----------------GAVIGG 63 (257)
T ss_pred CCCCEEECCCCEECCCCEEEEEEEECCCCEECCCCEECCCEEEECCEEECCCCEEEC-----------------CEEECC
T ss_conf 996218788668289857801888789758868858757368967708789988807-----------------607679
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 45433556665311044432000024444544443322222---211111222111234444650357718865556503
Q gi|254780771|r 199 DGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID---DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275 (347)
Q Consensus 199 ~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~---~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g 275 (347)
T Consensus 64 ~-----PQdlky~GE~--t~l~IG~~n~IRE~VTi~~GT~~g~g~T~iG~~nllMAysHvAHDC~vGn~vv~aN~a~LAG 136 (257)
T TIGR01852 64 E-----PQDLKYKGER--TELIIGDNNTIREFVTINRGTKSGGGVTSIGNNNLLMAYSHVAHDCVVGNHVVLANNATLAG 136 (257)
T ss_pred C-----CCCCEECCCC--CEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCEECCCCEEEECCEECCEEEEECCCEECE
T ss_conf 8-----8565014870--17998896569755785066258888899888765720535612436888169813631222
Q ss_pred CCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEE-CCHHHHHHHHHHHHHCCHHH
Q ss_conf 63656972973068783785988888986253260000798789982-41758889786786228267
Q gi|254780771|r 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGM-PARPIGEYLRHMVMLSKPSK 342 (347)
Q Consensus 276 ~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~-pa~~~~~~~~~~~~~~~l~~ 342 (347)
T Consensus 137 HV~vgD~a~iGG~~avHQFvRIG~~aMigG~s~v~~DvpPY~~~~G~~~a~l~Gl---N~vGLrR~Gf 201 (257)
T TIGR01852 137 HVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLVEGNSRAVLRGL---NIVGLRRRGF 201 (257)
T ss_pred EEEECCEEEECCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEE---EEEEEECCCC
T ss_conf 7998889997789721101330002322120024678776178637875337887---0132213787