HHsearch alignment for GI: 254780771 and conserved domain: TIGR01852
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=99.92 E-value=2.4e-25 Score=156.23 Aligned_cols=206 Identities=22% Similarity=0.309 Sum_probs=145.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEE--E-----EEEEEE
Q ss_conf 765433310015653233442000011001123203311221000000023321002332202331--0-----024420
Q gi|254780771|r 114 SFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI--Y-----SSLIGN 186 (347)
Q Consensus 114 ~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I--~-----~~iIG~ 186 (347)
T Consensus 2 HPTA~ie~gA~iG~~V~iGPf~~v~~~V~ig~g~~l~shV~i~G~T~iG~~~~i~p~A~iG~~PQdlky~GE~t~l~IG~ 81 (257)
T TIGR01852 2 HPTAIIEPGAEIGEDVEIGPFCIVGPGVKIGDGVELKSHVVIEGHTTIGEGTKIFPGAVIGGEPQDLKYKGERTELIIGD 81 (257)
T ss_pred CCCEEECCCCEECCCCEEEEEEEECCCCEECCCCEECCCEEEECCEEECCCCEEECCEEECCCCCCCEECCCCCEEEECC
T ss_conf 96218788668289857801888789758868858757368967708789988807607679885650148701799889
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 10000023213445433556665311044432000024444544443322222211111222111234444650357718
Q gi|254780771|r 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCI 266 (347)
Q Consensus 187 ~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~ 266 (347)
T Consensus 82 ~n~IRE~VTi~~--------GT~----~g~g~T~iG~~nllMAysHvA----HDC~vGn~vv~aN~a~LAGHV~vgD~a~ 145 (257)
T TIGR01852 82 NNTIREFVTINR--------GTK----SGGGVTSIGNNNLLMAYSHVA----HDCVVGNHVVLANNATLAGHVEVGDYAI 145 (257)
T ss_pred CCEEEEEEEECC--------CCC----CCCCEEEECCCCEECCCCEEE----ECCEECCEEEEECCCEECEEEEECCEEE
T ss_conf 656975578506--------625----888889988876572053561----2436888169813631222799888999
Q ss_pred EEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEEC-CCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 8655565036365697297306878378598888898625-32600007-98789982417588897867862
Q gi|254780771|r 267 IVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIP-AGQQYGGMPARPIGEYLRHMVML 337 (347)
Q Consensus 267 ~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~-~~~~~~G~pa~~~~~~~~~~~~~ 337 (347)
T Consensus 146 iGG~~avHQFvRIG~~aMigG~s~v~~D--vpPY~~~~G~~~a~l~GlN~vGLrR~Gf~~~~i~~i~~ayr~l 216 (257)
T TIGR01852 146 IGGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGLVEGNSRAVLRGLNIVGLRRRGFDREEITAIKKAYRLL 216 (257)
T ss_pred ECCCCCEEEEEEEHHHHHHHHHCCCCCC--CCCCEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 7789721101330002322120024678--7761786378753378870132213787989999999998876