HHsearch alignment for GI: 254780771 and conserved domain: TIGR01853
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro: IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis : UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] Members of this family also contain a hexapeptide repeat (IPR001451 from INTERPRO). This entry represents the non-repeating region of LPXD proteins.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009245 lipid A biosynthetic process.
Probab=99.98 E-value=2.1e-33 Score=199.92 Aligned_cols=290 Identities=26% Similarity=0.336 Sum_probs=183.0
Q ss_pred CCCCCHHHHHHHHCCEEECCCCCCEEECCCCCH---HHCCCCCEEEECCHHHHHHHHHCCCEEEEECHHHHHCCCCCCCC
Q ss_conf 788039999998466995577663387156798---88899869996186767777545856999887761014445531
Q gi|254780771|r 10 HKGIALMKLAQSIGASLLDENFGERMIYSLSPI---ARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKNIPC 86 (347)
Q Consensus 10 ~~~~sl~eIa~~l~~~l~g~~~~d~~I~~I~~l---~~A~~~~IsFi~~~kyl~~l~~s~A~aiI~~~d~~~~~~~~~~~ 86 (347)
T Consensus 15 ~g~~~i~~v~~l~~A~~~~----itF~~n~K~~~~l~~~~AgA-v~~~~~~~~~~~~~-~~~~L~v~~P~l~fA~--~~~ 86 (336)
T TIGR01853 15 EGDIKISGVAPLEKAKAEH----ITFLANPKYLKELKSSKAGA-VIVSADDQSKLVPK-KCAALVVKDPYLAFAK--VAE 86 (336)
T ss_pred CCCEEEEEECCCCCCCCCC----EEEECCHHHHHHHHCCCCEE-EEEEHHHCCCCCCC-CCCEEEECCCHHHHHH--HHH
T ss_conf 6766885307633588022----66533804787651577407-99715661785523-2505781781799999--998
Q ss_pred EECCCCCH-HHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCC
Q ss_conf 00123201-122101211122211235--576543331001565323344200001100112320331122100000002
Q gi|254780771|r 87 LLSDKPEV-SFAIAGSILYPQAMHMEA--SSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGA 163 (347)
Q Consensus 87 Iiv~nP~~-afA~i~~~l~~~~~~~~~--~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~ 163 (347)
T Consensus 87 ~F~~~~~~~lvaR~~~gi~p~a~~~~~a~~~~~v~I~pnvvIG~~v~IG~~~~I~pg~~iG~~v~IG~~~~i~~~v~i~~ 166 (336)
T TIGR01853 87 LFDPPPKRLLVARMEAGIHPTAVVEPSAKIGEGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSVIYPNVVIYE 166 (336)
T ss_pred HHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEEEE
T ss_conf 60887650121101035676873056531078436875417888868778636357768768868799677806708972
Q ss_pred CCCCCCCCCCCEEEEEEEE---------------------EEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 3321002332202331002---------------------4420100000232134454335566653110444320000
Q gi|254780771|r 164 GVRIGRNCSIGAGSSIYSS---------------------LIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQ 222 (347)
Q Consensus 164 ~~~IG~~~~I~~~~~I~~~---------------------iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig 222 (347)
T Consensus 167 ~~~lG~nV~I~~GaVIG~DGFGya~~~~g~~~KI~q~G~ViI~D~VEIGANTtIDRg~~-----~dT~i~~----gtKID 237 (336)
T TIGR01853 167 RVQLGKNVIIHAGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAF-----DDTVIGE----GTKID 237 (336)
T ss_pred CCEECCEEEECCCCEECCCCCCEEECCCCCEEEEEEECEEEEECEEEECCCCHHHCCCC-----CCCEEEC----CCEEC
T ss_conf 41564715876887886787320357889715441302489602338746870211021-----4718723----84662
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCE
Q ss_conf 24444544443322222211111222111234444650357718865556503636569729730687837859888889
Q gi|254780771|r 223 DKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQ 302 (347)
Q Consensus 223 ~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~ 302 (347)
T Consensus 238 NLVQIAHNc----------~IG~n~~ivaqvGiaGSt~iG~~V~~GGqvGv~GHl~IgD~v~i~A~sgV~~~~--~~~~~ 305 (336)
T TIGR01853 238 NLVQIAHNC----------RIGENCIIVAQVGIAGSTKIGRNVILGGQVGVAGHLEIGDNVTIGAKSGVTKSV--PPNGR 305 (336)
T ss_pred CEEEEEEEE----------EECCCCEEEEEEECCEEEEECCEEEECCEEEEECEEEECCCCEEEEECCCCCCC--CCCCC
T ss_conf 315741334----------626642789642011346755806962602651108943834884512206777--98860
Q ss_pred ECCCCEEEEEEC--CCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 862532600007--987899824175888978678622
Q gi|254780771|r 303 IASKSGVLKDIP--AGQQYGGMPARPIGEYLRHMVMLS 338 (347)
Q Consensus 303 i~a~s~v~~~v~--~~~~~~G~pa~~~~~~~~~~~~~~ 338 (347)
T Consensus 306 ygggi-----~Pa~~~~~w-----~k~~a~~~~l~~~~ 333 (336)
T TIGR01853 306 YGGGI-----IPAMPQKEW-----LKIAAKLKRLPELR 333 (336)
T ss_pred CCEEE-----CCCCHHHHH-----HHHHHHHHHCHHHH
T ss_conf 10011-----141202478-----99999987142553