HHsearch alignment for GI: 254780771 and conserved domain: TIGR02287

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..

Probab=99.70  E-value=2e-17  Score=113.26  Aligned_cols=102  Identities=24%  Similarity=0.393  Sum_probs=75.1

Q ss_pred             CCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEE
Q ss_conf             20000244445444433222-22211111222111234444650357718865556503636569729730687837859
Q gi|254780771|r  218 RVIIQDKVEIGANSAIDRGT-IDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK  296 (347)
Q Consensus       218 ~v~Ig~~v~IG~n~tIdrg~-~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~  296 (347)
T Consensus        47 rIvl~eGAN~QD~CVMH-GFPg~DTvVeenG------HvGHgAiLH-------------gC~vgrnaLvGMNAVVMDgAv  106 (193)
T TIGR02287        47 RIVLKEGANVQDTCVMH-GFPGQDTVVEENG------HVGHGAILH-------------GCRVGRNALVGMNAVVMDGAV  106 (193)
T ss_pred             CEEEECCCCCCCCCEEC-CCCCCCEEEECCC------CCCCCEEEC-------------CCEECCCCEECCCEEEECCCE
T ss_conf             25753488614642436-7299886760688------233212351-------------546325231116506616646


Q ss_pred             ECCCCEECCCCEEEE--EECCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf             888889862532600--0079878998241758889786786228
Q gi|254780771|r  297 IGDNVQIASKSGVLK--DIPAGQQYGGMPARPIGEYLRHMVMLSK  339 (347)
Q Consensus       297 ig~~~~i~a~s~v~~--~v~~~~~~~G~pa~~~~~~~~~~~~~~~  339 (347)
T Consensus       107 ige~sIVaA~aFVKAg~E~paq~Lv~GsPAkv~R~LseQElaWK~  151 (193)
T TIGR02287       107 IGERSIVAASAFVKAGAEIPAQVLVVGSPAKVVRELSEQELAWKK  151 (193)
T ss_pred             ECCCCCEEHHHHHHCCCCCCCCCEEECCCCEEEECCHHHHHHHHH
T ss_conf             677412002033434734784612662873055331146788741