HHsearch alignment for GI: 254780771 and conserved domain: TIGR03536
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.74 E-value=7.7e-05 Score=45.08 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=12.0
Q ss_pred CCEECCCCCCCCCCCC
Q ss_conf 2000024444544443
Q gi|254780771|r 218 RVIIQDKVEIGANSAI 233 (347)
Q Consensus 218 ~v~Ig~~v~IG~n~tI 233 (347)
T Consensus 224 GVvVg~gsDiGGgaSi 239 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST 239 (341)
T ss_pred CEEECCCCCCCCCEEE
T ss_conf 4696678766775024