HHsearch alignment for GI: 254780771 and conserved domain: TIGR03536
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.57 E-value=4.7e-05 Score=46.24 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=21.2
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEEE
Q ss_conf 36569729730687837859888889862532600
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK 311 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~ 311 (347)
T Consensus 251 isiG~~cLlGANsg--~GI~LGD~C~veaGlyvta 283 (341)
T TIGR03536 251 ISVGEGCLLGANAG--IGIPLGDRCTVEAGLYITA 283 (341)
T ss_pred EEECCCCCCCCCCC--CCCCCCCCCEEECCEEEEC
T ss_conf 88873220144455--5742489847812449927