HHsearch alignment for GI: 254780771 and conserved domain: cd00208
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.45 E-value=1.2e-13 Score=92.80 Aligned_cols=35 Identities=49% Similarity=0.608 Sum_probs=33.0
Q ss_pred CCEECCCCEEEECCEEECCEEECCCCEECCCCEEE
Q ss_conf 63656972973068783785988888986253260
Q gi|254780771|r 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL 310 (347)
Q Consensus 276 ~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~ 310 (347)
T Consensus 44 ~~~Ig~~v~Ig~~a~I~~gv~IGdn~~IgagavVt 78 (78)
T cd00208 44 PTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT 78 (78)
T ss_pred CCEECCCEEECCCCEEECCEEECCCCEECCCCEEC
T ss_conf 98999996998689897981999999999885699