HHsearch alignment for GI: 254780771 and conserved domain: cd03351
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=100.00 E-value=0 Score=345.23 Aligned_cols=195 Identities=32% Similarity=0.471 Sum_probs=170.5
Q ss_pred CCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECC
Q ss_conf 33310015653233442000011001123203311221000000023321002332202331002442010000023213
Q gi|254780771|r 118 GISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIG 197 (347)
Q Consensus 118 ~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG 197 (347)
T Consensus 1 ~IHptAiI~~~A~IG~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~-----------------~avIG 63 (254)
T cd03351 1 MIHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFP-----------------FASIG 63 (254)
T ss_pred CCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEECC-----------------CCCCC
T ss_conf 9189779699899999799999989999999999999979968919979776525605-----------------75347
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 445--433556665311044432000024444544443322222---211111222111234444650357718865556
Q gi|254780771|r 198 NDG--FGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID---DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVG 272 (347)
Q Consensus 198 ~~G--Fgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~---~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~ 272 (347)
T Consensus 64 ~~pqd~~~~g---------~~~~v~IG~~~~Ire~vtI~rgt~~~~~~T~IG~~~~im~~~HIaHdc~IG~~~iian~~~ 134 (254)
T cd03351 64 EAPQDLKYKG---------EPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNAT 134 (254)
T ss_pred CCCCCCCCCC---------CCCEEEECCCCEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEECCCC
T ss_conf 7876767379---------8676997997789953302367437887559788857820254456773379759933445
Q ss_pred EECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHCCHH
Q ss_conf 503636569729730687837859888889862532600007987899824175888978678622826
Q gi|254780771|r 273 IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSKPS 341 (347)
Q Consensus 273 ~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~~~~~~~~~l~ 341 (347)
T Consensus 135 laGhv~Igd~a~IGg~~~v~q~v~IG~~a~Igags~V~kDVpp~~~v~G~PA~~~gl---N~vGl~R~g 200 (254)
T cd03351 135 LAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIAAGNRARLRGL---NLVGLKRRG 200 (254)
T ss_pred CCCCEEECCCCEECCCCEECCCCEECCCEEECCCCEEECCCCCCCEECCCCCEEEEE---EHHHHHHCC
T ss_conf 568569899848988367759819996619976745611369872651796578721---489886779