HHsearch alignment for GI: 254780771 and conserved domain: cd03352
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.95 E-value=5.3e-28 Score=170.66 Aligned_cols=171 Identities=36% Similarity=0.520 Sum_probs=140.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEE-------------
Q ss_conf 6543331001565323344200001100112320331122100000002332100233220233100-------------
Q gi|254780771|r 115 FEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS------------- 181 (347)
Q Consensus 115 ~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~------------- 181 (347)
T Consensus 6 ~~v~I~~~avI~~~v~Ig~n~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~~f~~~~~~~~~~ 85 (205)
T cd03352 6 ENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWV 85 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCCEECCEEEECCCEEECCCCCCCCCCCCCCE
T ss_conf 99999998799999999999999898899999688988366003447278687544777153486213532314798404
Q ss_pred -------EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------2442010000023213445433556665311044432000024444544443322222211111222111234
Q gi|254780771|r 182 -------SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQ 254 (347)
Q Consensus 182 -------~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~ 254 (347)
T Consensus 86 ~~~~~g~v~Ig~~v~Ig~~~~I~~-g--------~------~~~T~IG~~~~i~~~v~ig----h~~~iG~~~~i~~~~~ 146 (205)
T cd03352 86 KIPQLGGVIIGDDVEIGANTTIDR-G--------A------LGDTVIGDGTKIDNLVQIA----HNVRIGENCLIAAQVG 146 (205)
T ss_pred ECCCCCCEEECCCEEECCCCEECC-C--------C------CCCCCCCCCCEECCCCCCC----CCCCCCCCEEECCCCC
T ss_conf 514213189848849888627636-6--------4------2677478776864545255----6404158707503200
Q ss_pred CCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC
Q ss_conf 4446503577188655565036365697297306878378598888898625
Q gi|254780771|r 255 IGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK 306 (347)
Q Consensus 255 i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~ 306 (347)
T Consensus 147 ~~g~~~Igd~~~iG~~s~i~~gv~IG~~a~VgagSvVtkd--Vp~~~iv~G~ 196 (205)
T cd03352 147 IAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSI--VPPGEYVSGT 196 (205)
T ss_pred CCCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCC--CCCCCEEEEE
T ss_conf 0265249743539896488299399999899868879648--6999699976