HHsearch alignment for GI: 254780771 and conserved domain: cd03353
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=100.00 E-value=0 Score=269.28 Aligned_cols=183 Identities=33% Similarity=0.499 Sum_probs=163.5
Q ss_pred CCCCC-CCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 43331-00156532334420000110011232033112210000000233210023322023310024420100000232
Q gi|254780771|r 117 GGISP-QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVR 195 (347)
Q Consensus 117 ~~I~~-~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~v 195 (347)
T Consensus 3 ~~i~p~s~~I~~~v~IG~~v~I~p~~~I~~~v~IG~~~~Ig~~~~I~-~~~IG~~~~I~~~~vi~~~~ig~~~~IG~~~~ 81 (193)
T cd03353 3 TLIDPETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAH 81 (193)
T ss_pred EEECCCEEEECCCCEECCCCEECCCEEEECCCEECCCCEECCCEEEC-CCEECCCCEECCCEECCCCEECCCCEECCCEE
T ss_conf 79589806999982999999998982992985999998995734577-86888874002100113525176526668507
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCEEEEEE
Q ss_conf 134454335566653110444320000244445444433222222111112221112-----344446503577188655
Q gi|254780771|r 196 IGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQ-----VQIGHNVHIGCGCIIVSQ 270 (347)
Q Consensus 196 IG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~-----v~i~hn~~iG~~~~~~~~ 270 (347)
T Consensus 82 i~~-------------------~~~I~~~~~iG~~v~i~-----~~~ig~~~~i~h~~~igd~~Ig~~v~Ig~~~i~~n~ 137 (193)
T cd03353 82 LRP-------------------GTVLGEGVHIGNFVEIK-----KSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNY 137 (193)
T ss_pred ECC-------------------CCEECCEEEECCCEEEE-----CCCCCCCCEECCEEECCCCEECCCCEECCCEEEECC
T ss_conf 658-------------------76887516742535764-----443368848772446188567778888667588734
Q ss_pred EEEECC-CEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCH
Q ss_conf 565036-3656972973068783785988888986253260000798789982417
Q gi|254780771|r 271 VGIAGS-TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPAR 325 (347)
Q Consensus 271 ~~~~g~-~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~ 325 (347)
T Consensus 138 ~g~~~~~t~IGd~v~IG~~~~i~~~v~IG~~a~Igags~V~kdVpp~~lvvg~-~~ 192 (193)
T cd03353 138 DGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIAR-AR 192 (193)
T ss_pred CCCCCCCCEECCCCEECCCCEEECCEEECCCCEECCCCEECCCCCCCCEEEEE-CC
T ss_conf 34335623433561898898798983999998998698888423999789962-48