HHsearch alignment for GI: 254780771 and conserved domain: cd03359

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.73  E-value=1.3e-17  Score=114.34  Aligned_cols=124  Identities=23%  Similarity=0.262  Sum_probs=71.4

Q ss_pred             CCCCCCCCCCCEEEEEEE---EE-EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf             332100233220233100---24-42010000023213445433556665311044432000024444544443322222
Q gi|254780771|r  164 GVRIGRNCSIGAGSSIYS---SL-IGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID  239 (347)
Q Consensus       164 ~~~IG~~~~I~~~~~I~~---~i-IG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~  239 (347)
T Consensus        21 nI~IG~~ssI~~~avirGD~~~I~IG~~~~I~d~~~I~~~~~~~~-------~~~~~~p~~IGd~v~Ig~~~~i~-----   88 (161)
T cd03359          21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFS-------KGVAFFPLHIGDYVFIGENCVVN-----   88 (161)
T ss_pred             CEEECCCCEECCCCEEECCCCCEEECCCCEECCCCEEECCCCCCC-------CCCCCCCCEECCCEEECCCEEEE-----
T ss_conf             759999878999968967886549999858889989924644357-------78888772848987989982884-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEECCCC
Q ss_conf             2111112221112344446503577188655565036365697297306878378598888898625-32600007987
Q gi|254780771|r  240 DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIPAGQ  317 (347)
Q Consensus       240 ~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~~~~  317 (347)
T Consensus        89 ------~~~Ig~~v~IG~~~~I~------------~g~~Ig~~~~I~~gsvV~~~~~ip~~~~~~G~Pak~i~~l~e~~  149 (161)
T cd03359          89 ------AAQIGSYVHIGKNCVIG------------RRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECT  149 (161)
T ss_pred             ------CCEECCCEEECCCCEEC------------CCCEECCCCEECCCCEECCCCEECCCCEEEECCEEEEEECCHHH
T ss_conf             ------88966771557981994------------99799999899889898899898998199851808957699999