HHsearch alignment for GI: 254780771 and conserved domain: pfam04613
>pfam04613 LpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD. UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] - UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein]. Members of this family also contain a hexapeptide repeat (pfam00132). This family constitutes the non-repeating region of LPXD proteins.
Probab=99.64 E-value=3.1e-16 Score=106.88 Aligned_cols=72 Identities=32% Similarity=0.628 Sum_probs=68.7
Q ss_pred CCEEECCCCCHHHCCCCCEEEECCHHHHHHHHHCCCEEEEECHHHHHCCCCCCCCEECCCCCHHHHHHCCCC
Q ss_conf 633871567988889986999618676777754585699988776101444553100123201122101211
Q gi|254780771|r 32 GERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSIL 103 (347)
Q Consensus 32 ~d~~I~~I~~l~~A~~~~IsFi~~~kyl~~l~~s~A~aiI~~~d~~~~~~~~~~~Iiv~nP~~afA~i~~~l 103 (347)
T Consensus 1 gd~~I~~va~l~~A~~~~isF~~n~ky~~~l~~t~A~aviv~~~~~~~~~~~~~~Iiv~nP~~afa~i~~lF 72 (72)
T pfam04613 1 GDREISGIAPLEEAGPGDISFLANPKYLKQLKTTKASAVIVTPDFADLVPEGIALLVVKNPYLAFAKLLQLF 72 (72)
T ss_pred CCCEEECCCCHHHCCCCCEEEECCHHHHHHHHHCCCCEEEECHHHHHHCCCCCCEEEECCHHHHHHHHHHHC
T ss_conf 994780454764389997899668878999986889899973788745768986899899899999999759