RPSBLAST alignment for GI: 254780771 and conserved domain: cd05787
>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.. Length = 79
Score = 40.3 bits (95), Expect = 7e-04
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 21/97 (21%)
Query: 167 IGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVE 226
IGR SIG G++I +S+IG +IG + V I I D V
Sbjct: 2 IGRGTSIGEGTTIKNSVIGR------NCKIGKN--------------VVIDNSYIWDDVT 41
Query: 227 IGANSAIDRGTI-DDTIIGENTKIDNQVQIGHNVHIG 262
I I + D +IG+ I I V IG
Sbjct: 42 IEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78