RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl]
glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(347 letters)
>gnl|CDD|31246 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl].
Length = 338
Score = 302 bits (775), Expect = 1e-82
Identities = 145/331 (43%), Positives = 191/331 (57%), Gaps = 9/331 (2%)
Query: 10 HKGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASA 69
L +LAQ +GA L + G+R+I ++P+ A GDIS++ + K+ ++ +A A
Sbjct: 1 MPSYTLAELAQQLGAELRGD--GDRVITGVAPLDEAQPGDISFLANPKYRKELKTSRAGA 58
Query: 70 IICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDV 129
+I S F P L+ P ++FA + Y + GI P A +
Sbjct: 59 VIVSAKDAAFAPAKKNALVVKDPYLAFAKVAQLFYR------PFNPAAGIHPTAVIDPTA 112
Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSV 188
I V I P V+ GV IG +G G+VIG V+IG I +IY +IGN+V
Sbjct: 113 TIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNV 172
Query: 189 ILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTK 248
I+HSG IG DGFGYA KI IGRVII D VEIGAN+ IDRG +DDT+IGE K
Sbjct: 173 IIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK 232
Query: 249 IDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSG 308
IDN VQIGHNV IG CII QVGIAGS IG V+IGGQ GIAG+L+IGD V I ++SG
Sbjct: 233 IDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSG 292
Query: 309 VLKDIPAGQQYGGMPARPIGEYLRHMVMLSK 339
V+ I GG+PA+PI E+L+ ++ +
Sbjct: 293 VMASITEPGYSGGIPAQPIKEWLKTAALIRR 323
>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase
(LpxD): The enzyme catalyzes the transfer of
3-hydroxymyristic acid or 3-hydroxy-arachidic acid,
depending on the organism, from the acyl carrier protein
(ACP) to UDP-3-O-acyl-glucosamine to produce
UDP-2,3-diacyl-GlcNAc. This constitutes the third step
in the lipid A biosynthetic pathway in Gram-negative
bacteria. LpxD is a homotrimer, with each subunit
consisting of a novel combination of an N-terminal
uridine-binding domain, a core lipid-binding left-handed
parallel beta helix (LbH) domain, and a C-terminal
alpha-helical extension. The LbH domain contains 9
turns, each containing three imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)..
Length = 205
Score = 274 bits (704), Expect = 2e-74
Identities = 113/205 (55%), Positives = 137/205 (66%), Gaps = 1/205 (0%)
Query: 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGN 186
KI + V I P AV+ GV IG +GPG VIG GV IG +C I +IY +IG+
Sbjct: 1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60
Query: 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGEN 246
VI+HSG IG+DGFG+A KI +G VII D VEIGAN+ IDRG + DT+IG+
Sbjct: 61 RVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDG 120
Query: 247 TKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK 306
TKIDN VQI HNV IG C+I +QVGIAGST IGDNV+IGGQ GIAG+L IGD V I +
Sbjct: 121 TKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAG 180
Query: 307 SGVLKDIPAGQQYGGMPARPIGEYL 331
SGV +P G+ G PA+P E+L
Sbjct: 181 SGVTSIVPPGEYVSGTPAQPHREWL 205
>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine
O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins
in this family catalyze the transfer of
(R)-3-hydroxymyristic acid from its acyl carrier protein
thioester to UDP-GlcNAc. It is the first enzyme in the
lipid A biosynthetic pathway and is also referred to as
LpxA. Lipid A is essential for the growth of Escherichia
coli and related bacteria. It is also essential for
maintaining the integrity of the outer membrane.
UDP-GlcNAc acyltransferase is a homotrimer of
left-handed parallel beta helix (LbH) subunits. Each
subunit contains an N-terminal LbH region with 9 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
and a C-terminal alpha-helical region..
Length = 254
Score = 107 bits (270), Expect = 5e-24
Identities = 60/198 (30%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVR 195
I P A+V PG +IG +GP VIG V IG IG+ I + IG + +
Sbjct: 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFAS 61
Query: 196 IGND--GFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD---TIIGENTKID 250
IG Y + R+ I D I I RGT T IG N +
Sbjct: 62 IGEAPQDLKYKGEPT---------RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLM 112
Query: 251 NQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL 310
V + H+ IG I+ + +AG IGD +IGG + + +IG + + SGV+
Sbjct: 113 AYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVV 172
Query: 311 KDIPAGQQYGGMPARPIG 328
+D+P G AR G
Sbjct: 173 QDVPPYVIAAGNRARLRG 190
Score = 28.9 bits (66), Expect = 1.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 125 LGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
L V+I D +I ++ V+ IGR VG GS +
Sbjct: 135 LAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGV 171
>gnl|CDD|31245 COG1043, LpxA, Acyl-[acyl carrier protein].
Length = 260
Score = 96.8 bits (241), Expect = 9e-21
Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVR 195
I P A++ PG EIG +GP +IG V IG + + + + IG + +
Sbjct: 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFAS 65
Query: 196 IGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD---TIIGENTKIDNQ 252
IG D D+ R+II D I I RGT+ T IG+N I
Sbjct: 66 IGEDP-------QDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAY 118
Query: 253 VQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKD 312
+ H+ IG CI+ + +AG +GD +IGG + +++IG + I S V +D
Sbjct: 119 AHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQD 178
Query: 313 IPAGQQYGGMPARPIG 328
+P G AR G
Sbjct: 179 VPPYVIASGNHARLRG 194
Score = 35.5 bits (82), Expect = 0.021
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
I A + D I + ++A A + VE+G +G S + VRIG + IG S+
Sbjct: 115 IMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSA 174
Query: 179 I------YSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVI 220
+ Y GN L +G G++R +IH + +++
Sbjct: 175 VSQDVPPYVIASGNHARLRGLNIVGLKRRGFSR--EEIHALRKAYKLL 220
>gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 94.9 bits (236), Expect = 3e-20
Identities = 57/192 (29%), Positives = 80/192 (41%), Gaps = 15/192 (7%)
Query: 127 EDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGN 186
I V I V+ P V + T +G VIG G I ++ IG + I + +
Sbjct: 261 ATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVI-KDSVIGDNAVIKAYSVIE 319
Query: 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGEN 246
+ G +G F R + + VHIG + K IG S T +G+
Sbjct: 320 GSTVGEGATVGP--FARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGH----LTYLGD- 372
Query: 247 TKIDNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKIGDNVQIAS 305
+IG NV+IG G I + G T IGDNV IG + + IGD IA+
Sbjct: 373 ------AEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAA 426
Query: 306 KSGVLKDIPAGQ 317
S + KD+P G
Sbjct: 427 GSTITKDVPEGA 438
>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate
uridyltransferase (GlmU), C-terminal left-handed
beta-helix (LbH) acetyltransferase domain: GlmU is also
known as UDP-N-acetylglucosamine pyrophosphorylase. It
is a bifunctional bacterial enzyme that catalyzes two
consecutive steps in the formation of
UDP-N-acetylglucosamine (UDP-GlcNAc), an important
precursor in bacterial cell wall formation. The two
enzymatic activities, uridyltransferase and
acetyltransferase, are carried out by two independent
domains. The C-terminal LbH domain possesses the
acetyltransferase activity. It catalyzes the
CoA-dependent acetylation of GlcN-1-phosphate to
GlcNAc-1-phosphate. The LbH domain contains 10 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The
acetyltransferase active site is located at the
interface between two subunits of the active LbH
trimer..
Length = 193
Score = 86.7 bits (216), Expect = 9e-18
Identities = 61/194 (31%), Positives = 90/194 (46%), Gaps = 29/194 (14%)
Query: 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL 190
I+ V I V+ PGV + KT +G VIG I ++ +IG G I +S + ++
Sbjct: 12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVI-KDSTIGDGVVIKASSVIEGAVI 70
Query: 191 HSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI- 249
+G +G F + R + + + VHIG + VE I + IGE +K
Sbjct: 71 GNGATVGP--FAHLRPGTVLGEGVHIG-----NFVE-----------IKKSTIGEGSKAN 112
Query: 250 ------DNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKIGDNVQ 302
D +IG V+IG G I + G+ T IGDNV IG + + IGD
Sbjct: 113 HLSYLGD--AEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGAT 170
Query: 303 IASKSGVLKDIPAG 316
IA+ S + KD+P G
Sbjct: 171 IAAGSTITKDVPPG 184
Score = 40.1 bits (95), Expect = 9e-04
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 218 RVIIQDKVEIGANSAIDRGTI--DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275
I VEIG + ID G I T+IGE+ I I + IG G +I + I G
Sbjct: 9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEG 67
Query: 276 STYIGDNVLIG------GQCGIAGYLKIGDNVQI 303
+ IG+ +G + + IG+ V+I
Sbjct: 68 AV-IGNGATVGPFAHLRPGTVLGEGVHIGNFVEI 100
Score = 37.8 bits (89), Expect = 0.005
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 245 ENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIA 304
E T ID V+IG +V I G I + G T IG++ +IG C I IGD V I
Sbjct: 8 ETTYIDGDVEIGVDVVIDPGVI------LEGKTVIGEDCVIGPNCVIKD-STIGDGVVIK 60
Query: 305 SKS 307
+ S
Sbjct: 61 ASS 63
>gnl|CDD|146990 pfam04613, LpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase, LpxD. UDP-3-O-[3-hydroxymyristoyl]
glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an
early step in lipid A biosynthesis:
UDP-3-O-(3-hydroxytetradecanoyl)glucosamine +
(R)-3-hydroxytetradecanoyl- [acyl carrier protein] ->
UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl
carrier protein]. Members of this family also contain a
hexapeptide repeat (pfam00132). This family constitutes
the non-repeating region of LPXD proteins.
Length = 72
Score = 83.0 bits (206), Expect = 1e-16
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 32 GERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKNIPCLLSDK 91
G+R I ++P+ A GDIS++ + K+L ++ KASA+I + D +P+ I L+
Sbjct: 1 GDREISGIAPLEEAGPGDISFLANPKYLKQLKTTKASAVIVTPDFADLVPEGIALLVVKN 60
Query: 92 PEVSFAIAGSIL 103
P ++FA +
Sbjct: 61 PYLAFAKLLQLF 72
>gnl|CDD|31401 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 70.0 bits (171), Expect = 9e-13
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 25/139 (17%)
Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189
IE+ VVI A + V IG +GPG++IG IG +IG G I +S+I +
Sbjct: 245 PIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMD--- 301
Query: 190 LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249
V IG+ +IG II + +IGA+ I D +IG N++I
Sbjct: 302 ---NVVIGH--------------GSYIGDSIIGENCKIGAS-----LIIGDVVIGINSEI 339
Query: 250 DNQVQIGHNVHIGCGCIIV 268
V +G + G I
Sbjct: 340 LPGVVVGPGSVVESGEIED 358
Score = 38.0 bits (88), Expect = 0.003
Identities = 27/93 (29%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIG 280
+D +E G I E I I V IG G I I T IG
Sbjct: 224 PEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIG 283
Query: 281 DNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDI 313
+ V IG I + I DNV I S + I
Sbjct: 284 EGVTIGNGVEIKNSI-IMDNVVIGHGSYIGDSI 315
>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT),
Left-handed parallel beta-Helix (LbH) domain; This group
is composed of mostly uncharacterized proteins
containing an N-terminal helical subdomain followed by a
LbH domain. The alignment contains 6 turns, each
containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity. A few members
are identified as NeuD, a sialic acid (Sia)
O-acetyltransferase that is required for Sia synthesis
and surface polysaccharide sialylation..
Length = 197
Score = 66.7 bits (164), Expect = 8e-12
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 213 IVHIGRVIIQDKVEIGANSAIDRGTI--DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ 270
++H ++ IG I G + D IG+N I+ IGH+ IG I
Sbjct: 86 LIH-PSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG 144
Query: 271 VGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMP 323
V ++G IG+ IG I + IG I + + V KD+P G G P
Sbjct: 145 VVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP 197
Score = 62.9 bits (154), Expect = 1e-10
Identities = 42/147 (28%), Positives = 56/147 (38%), Gaps = 37/147 (25%)
Query: 135 VVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI-YSSLIGNSVILHSG 193
+I P AVV P IG + G+VI RIG N I G+ I + +IG+ V + G
Sbjct: 85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG 144
Query: 194 VRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQV 253
V + G V I + IGA + TII V
Sbjct: 145 VVLS-------------------GGVTIGEGAFIGAGA---------TII-------QGV 169
Query: 254 QIGHNVHIGCGCIIVSQVGIAGSTYIG 280
IG IG G ++ V GS +G
Sbjct: 170 TIGAGAIIGAGAVVTKDVP-DGSVVVG 195
Score = 58.7 bits (143), Expect = 2e-09
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
I+ A +G D I D V IAP V+ GV IG ++G G+ I GV IG IGAG+
Sbjct: 123 INTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAV 182
Query: 179 IYSSLIGNSV 188
+ + SV
Sbjct: 183 VTKDVPDGSV 192
>gnl|CDD|31247 COG1045, CysE, Serine acetyltransferase [Amino acid transport and
metabolism].
Length = 194
Score = 62.2 bits (151), Expect = 2e-10
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 215 HIGRVIIQDKVEIGANSAIDRGTIDD----TIIGENTKIDNQVQIGHNVHIGCGCIIVSQ 270
+ R + +EI + I RG D +IGE I + V I H V +G
Sbjct: 60 SLSRFLFG--IEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLG------GT 111
Query: 271 VGIAGSTY--IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIG 328
+G + IG+ V IG I G ++IGDN +I + S VLKD+P G+PAR IG
Sbjct: 112 GKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVIG 171
Query: 329 E 329
Sbjct: 172 R 172
Score = 37.6 bits (87), Expect = 0.005
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 30/102 (29%)
Query: 143 VYPGVEIGRKTYV--GPGSVIGAGVRIGRNCSIGAGSSIYSS---------LIGNSVILH 191
++PG +IGR ++ G G VIG IG + +I G ++ + IGN V +
Sbjct: 70 IHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIG 129
Query: 192 SGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAI 233
+G +I +G + I D +IGA S +
Sbjct: 130 AGAKI-------------------LGNIEIGDNAKIGAGSVV 152
Score = 36.0 bits (83), Expect = 0.015
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 20/85 (23%)
Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIG--------RKTYVGPGSVIGAG------VRIGRNC 171
GE I D V I Y GV +G R +G G IGAG + IG N
Sbjct: 91 GETAVIGDDVTI------YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNA 144
Query: 172 SIGAGSSIYSSLIGNSVILHSGVRI 196
IGAGS + + N+ ++ R+
Sbjct: 145 KIGAGSVVLKDVPPNATVVGVPARV 169
>gnl|CDD|39947 KOG4750, KOG4750, KOG4750, Serine O-acetyltransferase [Amino acid
transport and metabolism].
Length = 269
Score = 59.3 bits (143), Expect = 1e-09
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 219 VIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTY 278
V I +IG +D T +IGE + + V I H V +G G
Sbjct: 149 VDIHPAAKIGKGILLDHAT--GVVIGETAVVGDNVSILHPVTLGG---TGKGSG-DRHPK 202
Query: 279 IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIG 328
IGDNVLIG I G + IG+ IA+ S VLKD+P G PA+ IG
Sbjct: 203 IGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKLIG 252
Score = 31.2 bits (70), Expect = 0.45
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
KI D V+I + V IG + GSV+
Sbjct: 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVV 233
Score = 30.0 bits (67), Expect = 1.1
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 110 MEASSFEGGISPQAFLGEDVKIED--GVVIAPMAVVYPGV-------------------- 147
+ +F I P A +G+ + ++ GVVI AVV V
Sbjct: 142 RISPNFGVDIHPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHP 201
Query: 148 EIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196
+IG +G G I V IG I AGS + + N++ + + ++
Sbjct: 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKL 250
>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This
family is composed of maltose O-acetyltransferase,
galactoside O-acetyltransferase (GAT), xenobiotic
acyltransferase (XAT) and similar proteins. MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively while GAT
specifically acetylates galactopyranosides. XAT
catalyzes the CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. XATs are implicated in
inactivating xenobiotics leading to xenobiotic
resistance in patients. Members of this family contain a
a left-handed parallel beta-helix (LbH) domain with at
least 5 turns, each containing three imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their
active form..
Length = 109
Score = 59.0 bits (144), Expect = 2e-09
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 15/104 (14%)
Query: 239 DDTIIGENTKID--NQVQIGHNVHIGCGCIIVS-------------QVGIAGSTYIGDNV 283
D+ IG I + IG NV IG I Q + IGD+V
Sbjct: 6 DNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDV 65
Query: 284 LIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327
IG I + IGD + + S V KD+P G PA+ I
Sbjct: 66 WIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNPAKVI 109
Score = 48.2 bits (116), Expect = 3e-06
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 23/106 (21%)
Query: 146 GVEIGRKTYVGPGSVIGA--GVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGY 203
+ IG Y+GPG VI A G+ IG N IG +IY
Sbjct: 1 NISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH-----------------NHDI 43
Query: 204 ARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249
I + V ++I D V IGAN I G IG+ +
Sbjct: 44 DDPERPIEQGVTSAPIVIGDDVWIGANVVILPG----VTIGDGAVV 85
Score = 42.4 bits (101), Expect = 2e-04
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 19/71 (26%)
Query: 126 GEDVKIEDGVVIAPMAVVYPG-------------------VEIGRKTYVGPGSVIGAGVR 166
G + I D V+I P +Y + IG ++G VI GV
Sbjct: 19 GGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVT 78
Query: 167 IGRNCSIGAGS 177
IG +GAGS
Sbjct: 79 IGDGAVVGAGS 89
Score = 34.0 bits (79), Expect = 0.059
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 121 PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
Q + I D V I V+ PGV IG VG GSV+
Sbjct: 51 EQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVV 91
>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This
family is composed of gamma carbonic anhydrase (CA),
Ferripyochelin Binding Protein (FBP), E. coli paaY
protein, and similar proteins. CAs are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism, involving the
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Gamma CAs are
trimeric enzymes with left-handed parallel beta helix
(LbH) structural domain..
Length = 153
Score = 58.6 bits (143), Expect = 2e-09
Identities = 52/186 (27%), Positives = 69/186 (37%), Gaps = 58/186 (31%)
Query: 148 EIGRKTYVGPGS-VIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARG 206
EI ++ P + VIG V +G S+ G+ + RG
Sbjct: 1 EIDPSAFIAPNATVIGD-VTLGEGSSVWFGAVL-------------------------RG 34
Query: 207 VSDIHKIVHIG-RVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGC 265
D++ I IG R IQD S + TIIG+N V +GH + GC
Sbjct: 35 --DVNPI-RIGERTNIQD------GSVLHVDPGYPTIIGDN------VTVGHGAVLH-GC 78
Query: 266 IIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL--KDIPAGQQYGGMP 323
I GDN LIG I IG +A+ S V K IP G G P
Sbjct: 79 TI------------GDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSP 126
Query: 324 ARPIGE 329
A+ + E
Sbjct: 127 AKVVRE 132
Score = 48.9 bits (118), Expect = 2e-06
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVV---YPGVEIGRKTYVGPGSVI----GAGVRIGRNC 171
I+P A + DV + +G + AV+ + IG +T + GSV+ G IG N
Sbjct: 8 IAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNV 67
Query: 172 SIGAGSSIYS------SLIG-NSVILHSGVRIGNDGF 201
++G G+ ++ LIG ++IL G IG
Sbjct: 68 TVGHGAVLHGCTIGDNCLIGMGAIIL-DGAVIGKGSI 103
Score = 46.6 bits (112), Expect = 9e-06
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
G I D V + AV++ G IG +G G++I G IG+ + AGS
Sbjct: 58 GYPTIIGDNVTVGHGAVLH-GCTIGDNCLIGMGAIILDGAVIGKGSIVAAGS 108
Score = 33.5 bits (78), Expect = 0.093
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRI 167
I D +I A++ G IG+ + V GS++ G I
Sbjct: 79 TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVI 116
Score = 26.6 bits (60), Expect = 9.5
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVG--PGSVI 161
I A + + I G ++A ++V PG I + V P V+
Sbjct: 86 IGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVV 130
>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel
beta-Helix (LbH) N-terminal domain: This group is
composed of Xanthomonas campestris WcxM and proteins
with similarity to the WcxM N-terminal domain. WcxM is
thought to be bifunctional, catalyzing both the
isomerization and transacetylation reactions of
keto-hexoses. It contains an N-terminal LbH domain
responsible for the transacetylation function and a
C-terminal isomerase domain. The LbH domain contains
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with
acyltransferase activity..
Length = 119
Score = 57.9 bits (141), Expect = 4e-09
Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCII------------- 267
I D IG N I+ D IG+N KI + V I V I I
Sbjct: 1 IGDNCIIGTNVFIEN----DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR 56
Query: 268 --VSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPAR 325
+ + T + IG I + IG+ + + + V KD+P G PAR
Sbjct: 57 SKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPAR 116
Query: 326 PIG 328
IG
Sbjct: 117 IIG 119
Score = 46.0 bits (110), Expect = 1e-05
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 15/70 (21%)
Query: 123 AFLGEDVKIEDGVVIAPMAV---------------VYPGVEIGRKTYVGPGSVIGAGVRI 167
+ E V IED V I P V G + R +G + I GV I
Sbjct: 29 VSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTI 88
Query: 168 GRNCSIGAGS 177
G +GAG+
Sbjct: 89 GEYALVGAGA 98
Score = 40.6 bits (96), Expect = 6e-04
Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 26/98 (26%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIG---------------A 163
I F+ DVKI D V I +Y GV I ++GP V
Sbjct: 7 IGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELK 66
Query: 164 GVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGF 201
G + R SIGA N+ IL GV IG
Sbjct: 67 GTTVKRGASIGA----------NATIL-PGVTIGEYAL 93
Score = 38.3 bits (90), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
++ G I A + PGV IG VG G+V+
Sbjct: 68 TTVKRGASIGANATILPGVTIGEYALVGAGAVV 100
>gnl|CDD|36674 KOG1461, KOG1461, KOG1461, Translation initiation factor 2B,
epsilon subunit (eIF-2Bepsilon/GCD6) [Translation,
ribosomal structure and biogenesis].
Length = 673
Score = 54.5 bits (131), Expect = 5e-08
Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 211 HKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ 270
I V++ V +GAN I GT IG +KI N V IG C I S
Sbjct: 314 RNIYKSPDVVLSHSVIVGANVVIGAGTK----IGSGSKISNSV-------IGANCRIGSN 362
Query: 271 VGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQI 303
V I S +I +NV IG C I + I D+V+I
Sbjct: 363 VRIKNS-FIWNNVTIGDNCRI-DHAIICDDVKI 393
Score = 52.6 bits (126), Expect = 1e-07
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 132 EDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILH 191
VV++ +V V IG T +G GS I V IG NC IG+ I +S I N+V +
Sbjct: 319 SPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSV-IGANCRIGSNVRIKNSFIWNNVTIG 377
Query: 192 SGVRIGN----DGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDT 241
RI + D G V V++ + NS + + T +++
Sbjct: 378 DNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKVRQPTTEES 431
Score = 48.0 bits (114), Expect = 4e-06
Identities = 39/119 (32%), Positives = 51/119 (42%), Gaps = 17/119 (14%)
Query: 151 RKTYVGPGSVIGAGVRIGRNCSIGAGSSI-YSSLIGNSVILHSGVRIGNDGFGYARGVSD 209
R Y P V+ V +G N IGAG+ I S I NSVI + RIG++
Sbjct: 314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVI-GANCRIGSN---------- 362
Query: 210 IHKIVHIGRVIIQDKVEIGANSAIDRGTI-DDTIIGENTKIDNQVQIGHNVHIGCGCII 267
V I I + V IG N ID I DD IGE + +G V +G ++
Sbjct: 363 ----VRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVL 417
Score = 29.9 bits (67), Expect = 1.1
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 122 QAFLGEDVKIE-----------DGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGR 169
+F+ +V I D V I A++ PG +G VG V+ ++ +
Sbjct: 367 NSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKVRQ 425
>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl
group of L-serine to form O-acetylserine, as the first
step of a two-step biosynthetic pathway in bacteria and
plants leading to the formation of L-cysteine. This
reaction represents a key metabolic point of regulation
for the cysteine biosynthetic pathway due to its
feedback inhibition by cysteine. The enzyme is a 175 kDa
homohexamer, composed of a dimer of homotrimers. Each
subunit contains an N-terminal alpha helical region and
a C-terminal left-handed beta-helix (LbH) subdomain with
5 turns, each containing a hexapeptide repeat motif
characteristic of the acyltransferase superfamily of
enzymes. The trimer interface mainly involves the
C-terminal LbH subdomain while the dimer (of trimers)
interface is mediated by the N-terminal alpha helical
subdomain..
Length = 101
Score = 54.4 bits (132), Expect = 5e-08
Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIG 280
I +IG ID GT +IGE I + I V +G + G IG
Sbjct: 5 IHPGAKIGPGLFIDHGT--GIVIGETAVIGDNCTIYQGVTLG----GKGKGGGKRHPTIG 58
Query: 281 DNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMP 323
DNV+IG I G + IGDNV+I + + V KD+PA G+P
Sbjct: 59 DNVVIGAGAKILGNITIGDNVKIGANAVVTKDVPANSTVVGVP 101
Score = 39.7 bits (94), Expect = 0.001
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 41/137 (29%)
Query: 146 GVEIGRKTYVGPGSVI--GAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGY 203
G++I +GPG I G G+ IG IG ++ ++ GV +G G G
Sbjct: 2 GIDIHPGAKIGPGLFIDHGTGIVIGETAVIG-----------DNCTIYQGVTLGGKGKGG 50
Query: 204 ARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGC 263
+ I D V IGA + I+G + IG NV IG
Sbjct: 51 GKRH-----------PTIGDNVVIGAGA---------KILG-------NITIGDNVKIGA 83
Query: 264 GCIIVSQVGIAGSTYIG 280
++ V A ST +G
Sbjct: 84 NAVVTKDVP-ANSTVVG 99
Score = 37.8 bits (89), Expect = 0.004
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPG--VEIGRKTYVGPGSVIGAGVRIGRNCSIGAG 176
I A +G++ I GV + IG +G G+ I + IG N IGA
Sbjct: 25 IGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGAN 84
Query: 177 SSIYSSLIGNSVIL 190
+ + + NS ++
Sbjct: 85 AVVTKDVPANSTVV 98
>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate
thymidylyltransferase, C-terminal Left-handed parallel
beta-Helix (LbH) domain: Proteins in this family show
simlarity to glucose-1-phosphate adenylyltransferases in
that they contain N-terminal catalytic domains that
resemble a dinucleotide-binding Rossmann fold and
C-terminal LbH fold domains. Members in this family are
predicted to be glucose-1-phosphate
thymidylyltransferases, which are involved in the
dTDP-L-rhamnose biosynthetic pathway.
Glucose-1-phosphate thymidylyltransferase catalyzes the
synthesis of deoxy-thymidine di-phosphate
(dTDP)-L-rhamnose, an important component of the cell
wall of many microorganisms. The C-terminal LbH domain
contains multiple turns, each containing three imperfect
tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity..
Length = 163
Score = 53.0 bits (128), Expect = 1e-07
Identities = 33/185 (17%), Positives = 68/185 (36%), Gaps = 32/185 (17%)
Query: 112 ASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNC 171
EG + + V I +G ++ A + V IG+ +GP + I +G C
Sbjct: 1 KDEIEGTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGC 60
Query: 172 SIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANS 231
+G + +S+I + G ++ + Y +G ++ + V +GA +
Sbjct: 61 VVGNSVEVKNSIIMD------GTKVPH--LNY------------VGDSVLGENVNLGAGT 100
Query: 232 AI-----DRGTIDDTIIGENTKIDNQVQ-----IGHNVHIGCGCIIVSQVGIAGSTYIGD 281
D + + GE ++D + IG V G + V I +++
Sbjct: 101 ITANLRFDDKPVKVRLKGE--RVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYP 158
Query: 282 NVLIG 286
++
Sbjct: 159 GCVVR 163
Score = 36.0 bits (84), Expect = 0.017
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 253 VQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQI 303
V I V IG G I+ S I G IG IG I GY +GD +
Sbjct: 12 VTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVV 62
Score = 31.8 bits (73), Expect = 0.31
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIG 280
+++ V I I G I + I+ V IG IG I G T +G
Sbjct: 8 VEEGVTIKGPVWIGEGAI----VRSGAYIEGPVIIGKGCEIGPNAYI------RGYTVLG 57
Query: 281 DNVLIGGQCGIAGYLKIGDNVQIA 304
D ++G + + I D ++
Sbjct: 58 DGCVVGNSVEVKNSI-IMDGTKVP 80
>gnl|CDD|30459 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily)
[General function prediction only].
Length = 190
Score = 52.6 bits (125), Expect = 2e-07
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 9/134 (6%)
Query: 203 YARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIG 262
+ + + + + IG I ++GE I + V +G NV I
Sbjct: 46 GIKIGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNV--VILVGEGITIGDNVVVGPNVTIY 103
Query: 263 CGCIIVSQVG-------IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPA 315
V AG IG++V IG I + IG+ I + S V KD+P
Sbjct: 104 TNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPP 163
Query: 316 GQQYGGMPARPIGE 329
G PAR I +
Sbjct: 164 YGIVAGNPARVIRK 177
Score = 39.9 bits (92), Expect = 0.001
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 19/103 (18%)
Query: 118 GISPQAFLGEDVKIEDGVVIAPMAVVYPG-------------------VEIGRKTYVGPG 158
G++ +GE + I D VV+ P +Y V IG ++G G
Sbjct: 77 GVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAG 136
Query: 159 SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGF 201
+VI GV IG IGAGS + + ++ + R+
Sbjct: 137 AVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRKRD 179
Score = 36.0 bits (82), Expect = 0.015
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 5/124 (4%)
Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY---SSLIG 185
VK+ I V E+ + + IG C IG I IG
Sbjct: 32 VKLGRYAEILGRLVGIKIGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNVVILVGEGITIG 91
Query: 186 NSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI--DDTII 243
++V++ V I + ++I +V G V I + V IGA + I G + +I
Sbjct: 92 DNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVI 151
Query: 244 GENT 247
G +
Sbjct: 152 GAGS 155
Score = 27.6 bits (60), Expect = 5.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 109 HMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
+ A+ + +GEDV I G VI PGV IG +G GSV+
Sbjct: 111 FVTANIGALVGAGPVTIGEDVWIGAGAVIL------PGVTIGEGAVIGAGSVV 157
>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the
protein product of the E. coli wcaF gene and similar
proteins. WcaF is part of the gene cluster responsible
for the biosynthesis of the extracellular polysaccharide
colanic acid. The wcaF protein is predicted to contain a
left-handed parallel beta-helix (LbH) domain encoded by
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity. Many are trimeric in their
active forms..
Length = 107
Score = 51.5 bits (124), Expect = 3e-07
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 31/120 (25%)
Query: 224 KVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ-----VG------ 272
+ IG NS I GE I N + IG I SQ G
Sbjct: 3 NLTIGDNSWI----------GEGVWIYNLAPV----TIGSDACI-SQGAYLCTGSHDYRS 47
Query: 273 -----IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327
I IGD + + + + IG+ + ++S V++D+PA Y G PA P+
Sbjct: 48 PAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV 107
Score = 36.8 bits (86), Expect = 0.008
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 140 MAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSV 188
++ + IG +V + +G GV IG +GA S + L +V
Sbjct: 50 FPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTV 98
>gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and
Galactoside O-acetyltransferase (GAT): MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively at the C6
position of the nonreducing end glucosyl moiety. GAT
specifically acetylates galactopyranosides. Furthermore,
MAT shows higher affinity toward artificial substrates
containing an alkyl or hydrophobic chain as well as a
glucosyl unit. Active MAT and GAT are homotrimers, with
each subunit consisting of an N-terminal alpha-helical
region and a C-terminal left-handed parallel alpha-helix
(LbH) subdomain with 6 turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X)..
Length = 169
Score = 48.6 bits (117), Expect = 2e-06
Identities = 38/110 (34%), Positives = 42/110 (38%), Gaps = 26/110 (23%)
Query: 244 GENTKIDNQVQIGHN--------VHIGCGCIIVSQVGI-------------AGSTY---- 278
G N I + N V IG +I V I G Y
Sbjct: 60 GYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPI 119
Query: 279 -IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327
IGDNV IGG I + IGDN I + S V KDIPA G PAR I
Sbjct: 120 TIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARVI 169
Score = 38.2 bits (90), Expect = 0.004
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
+ IG ++G G +I GV IG N IGAGS
Sbjct: 119 ITIGDNVWIGGGVIILPGVTIGDNSVIGAGS 149
Score = 34.3 bits (80), Expect = 0.050
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAG 164
+ I D V I ++ PGV IG SVIGAG
Sbjct: 119 ITIGDNVWIGGGVIILPGVTIGD------NSVIGAG 148
>gnl|CDD|34410 COG4801, COG4801, Predicted acyltransferase [General function
prediction only].
Length = 277
Score = 48.4 bits (115), Expect = 3e-06
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 218 RVIIQDKVEIGANSAIDRGTIDDTII-GENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS 276
++++ V IG NS + G + + II GE +I + + ++ I C + V +
Sbjct: 16 IIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDI-VAKDIRIDMWCKVTGNVIVEND 74
Query: 277 TYIGDNVLIGGQCGIAGYLKIGDNVQI 303
YIG+ I G+ + G L IG +V I
Sbjct: 75 AYIGEFSSIKGKLTVIGDLDIGADVII 101
Score = 27.2 bits (60), Expect = 7.4
Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 23/206 (11%)
Query: 125 LGEDVKIEDGVVIAPMAV-----VYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI 179
+GE V+I +V + + V V + Y+G S I + + + IGA I
Sbjct: 42 VGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVII 101
Query: 180 YSSLI-GNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238
+ +++ + V + F Y + + + +++ + G I I
Sbjct: 102 EGGFVAKGWIVIRNPVPVLEFLFLYLSVLLRLGRAEEAEKLLEELFESDGGPLIIPADYI 161
Query: 239 ---------DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQC 289
DD +G +++ V+ G GCG GS +++L+G
Sbjct: 162 VSDERIKVGDDAFVGTVCRLEGNVKAGVIS--GCGYY------GFGSIRGRNDILVGNNE 213
Query: 290 GIAGYLKIGDNVQIASKSGVLKDIPA 315
I G + V+ S VL DI A
Sbjct: 214 PIHGPVANRGFVKTISNVEVLGDISA 239
>gnl|CDD|31007 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine
patch superfamily [General function prediction only].
Length = 176
Score = 47.5 bits (113), Expect = 5e-06
Identities = 48/184 (26%), Positives = 65/184 (35%), Gaps = 56/184 (30%)
Query: 149 IGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVS 208
I +V P + + VRIG SI G+ + RG
Sbjct: 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVL-------------------------RG-- 46
Query: 209 DIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHI-GCGCII 267
D+ I R IQD V I A+ IG++ V IGH + GC
Sbjct: 47 DVEPIRIGARTNIQDGVVIHADPGYP------VTIGDD------VTIGHGAVVHGC---- 90
Query: 268 VSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL--KDIPAGQQYGGMPAR 325
IGDNVLIG + IGD + + + V K+IP G G PA+
Sbjct: 91 ----------TIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAK 140
Query: 326 PIGE 329
+
Sbjct: 141 VVRP 144
Score = 47.1 bits (112), Expect = 8e-06
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 28/135 (20%)
Query: 121 PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGV---RIGRNCSIGAGS 177
++ G KI+ +AP A V V IG + PG+V+ V RIG +I G
Sbjct: 4 IYSYEGLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGV 63
Query: 178 SIYSS-----------LIGNSVILHSGVRIGND---GFGYARGVSDIHKIVHIGRVIIQD 223
I++ IG+ ++H G IG++ G G + + IG D
Sbjct: 64 VIHADPGYPVTIGDDVTIGHGAVVH-GCTIGDNVLIGMG-----ATVLDGAVIG-----D 112
Query: 224 KVEIGANSAIDRGTI 238
+GA + + G
Sbjct: 113 GSIVGAGALVTPGKE 127
Score = 44.8 bits (106), Expect = 4e-05
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIG 185
G V I D V I AVV+ G IG +G G+ + G IG +GAG+ +
Sbjct: 70 GYPVTIGDDVTIGHGAVVH-GCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEI 128
Query: 186 NSVILHSGVRIGN 198
L G
Sbjct: 129 PGGSLVVGSPAKV 141
Score = 44.0 bits (104), Expect = 7e-05
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVV---YPGVEIGRKTYVGPGSVI----GAGVRIGRNC 171
++P A + DV+I GV I P AV+ + IG +T + G VI G V IG +
Sbjct: 20 VAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDV 79
Query: 172 SIGAGSSIYS------SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVII 221
+IG G+ ++ LIG + G IG+ A + K + G +++
Sbjct: 80 TIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVV 135
>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic
anhydrases are zinc-containing enzymes that catalyze the
reversible hydration of carbon dioxide in a two-step
mechanism, involving the nucleophilic attack of a
zinc-bound hydroxide ion on carbon dioxide, followed by
the regeneration of the active site by ionization of the
zinc-bound water molecule and removal of a proton from
the active site. They are ubiquitous enzymes involved in
fundamental processes like photosynthesis, respiration,
pH homeostasis and ion transport. There are three
distinct groups of carbonic anhydrases - alpha, beta
and gamma - which show no significant sequence identity
or structural similarity. Gamma CAs are homotrimeric
enzymes, with each subunit containing a left-handed
parallel beta helix (LbH) structural domain..
Length = 167
Score = 45.7 bits (109), Expect = 2e-05
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 124 FLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSL 183
+G +V I+DGVVI A+ V IG+ + G+++ IG NC IG S ++++
Sbjct: 44 IIGANVNIQDGVVI--HALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAK 101
Query: 184 IG-NSVILHSGVRIG 197
+G N VI H+ V G
Sbjct: 102 VGDNCVIGHNAVVDG 116
Score = 42.6 bits (101), Expect = 2e-04
Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 22/140 (15%)
Query: 137 IAPMAVVYPGVEIGRKTYVGPGSVI----GAGVRIGRNCSIGAGSSIYSSLIGNSVILHS 192
+ P AVV V IG +VGPG+ I G + IG N +I G I++ +
Sbjct: 11 VHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHA-------LEGY 63
Query: 193 GVRIGNDGFGYARGVSDIHK-IVHIGRVIIQDKVEIGANSAIDRGTI-DDTIIGENTKID 250
V IG + VS H IVH G I D IG S + + D+ +IG N +D
Sbjct: 64 SVWIGKN-------VSIAHGAIVH-GPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVD 115
Query: 251 NQVQIGHNVHIGCGCIIVSQ 270
V+I ++ G +I SQ
Sbjct: 116 G-VEIPPGRYVPAGAVITSQ 134
Score = 41.8 bits (99), Expect = 2e-04
Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 216 IGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275
IG VII D V +G ++I R II IG NV+I G +I + G
Sbjct: 18 IGDVIIGDNVFVGPGASI-RADEGTPII-----------IGANVNIQDGVVIHALEG--Y 63
Query: 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK 311
S +IG NV I + G IGDN I +S V
Sbjct: 64 SVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFN 99
>gnl|CDD|32354 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino
acid transport and metabolism].
Length = 271
Score = 45.3 bits (107), Expect = 3e-05
Identities = 36/144 (25%), Positives = 51/144 (35%), Gaps = 32/144 (22%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
I P A + I G V+ P + V G G T V + +G+ ++G+N IG G+S
Sbjct: 111 IVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGAS 170
Query: 179 IYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238
I L VII D IGANS + G
Sbjct: 171 IGGVLEPLQA----------------------------NPVIIGDNCLIGANSEVVEG-- 200
Query: 239 DDTIIGENTKIDNQVQIGHNVHIG 262
I+G+ + V I + I
Sbjct: 201 --VIVGDGCVVAAGVFITQDTKIY 222
Score = 44.5 bits (105), Expect = 5e-05
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 220 IIQDKVEIGANSAIDRGTIDD--TIIGENTKID------NQVQIGHNVHIGCGCII--VS 269
I++ I + + + + GE T +D + Q+G N HIG G I V
Sbjct: 116 IVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVL 175
Query: 270 QVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP 314
+ A IGDN LIG + + +GD +A+ + +D
Sbjct: 176 EPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTK 220
Score = 36.4 bits (84), Expect = 0.013
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 243 IGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK------ 296
I + T + + + G G ++ + + +G N IGG I G L+
Sbjct: 123 IAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANP 182
Query: 297 --IGDNVQIASKSGVLKDIPAG 316
IGDN I + S V++ + G
Sbjct: 183 VIIGDNCLIGANSEVVEGVIVG 204
Score = 29.5 bits (66), Expect = 1.4
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 116 EGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAG----VRIGRNC 171
E ++ A GE ++ + A V IG G V+ V IG NC
Sbjct: 132 ESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGG--ASIGGVLEPLQANPVIIGDNC 189
Query: 172 SIGAGSSIYSSLI-GNSVILHSGVRIGND 199
IGA S + +I G+ ++ +GV I D
Sbjct: 190 LIGANSEVVEGVIVGDGCVVAAGVFITQD 218
>gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class
of hexapeptide acyltransferases is composed of a large
number of microbial enzymes that catalyze the
CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. Members of this class of
enzymes include Enterococcus faecium streptogramin A
acetyltransferase and Pseudomonas aeruginosa
chloramphenicol acetyltransferase. They contain repeated
copies of a six-residue hexapeptide repeat sequence
motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a
left-handed parallel beta helix (LbH) structure. The
active enzyme is a trimer with CoA and substrate binding
sites at the interface of two separate LbH subunits.
XATs are implicated in inactivating xenobiotics leading
to xenobiotic resistance in patients..
Length = 145
Score = 44.8 bits (107), Expect = 3e-05
Identities = 41/183 (22%), Positives = 56/183 (30%), Gaps = 62/183 (33%)
Query: 147 VEIGRKTYVGPG--SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYA 204
+ +G +Y V G + IG+ CSI G V+IG G
Sbjct: 2 ISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPG-----------------VKIGLGG---- 40
Query: 205 RGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCG 264
H + D +K D V IG++V IG G
Sbjct: 41 -----NHPTDWV--------STYPFYIFGGEWEDDAKFDDWPSKGD--VIIGNDVWIGHG 85
Query: 265 CIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPA 324
I+ V IGD IA+ + V KD+P GG PA
Sbjct: 86 ATILPGV------------------------TIGDGAVIAAGAVVTKDVPPYAIVGGNPA 121
Query: 325 RPI 327
+ I
Sbjct: 122 KVI 124
Score = 32.5 bits (75), Expect = 0.19
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAG 164
DV I + V I A + PGV IG G+VI AG
Sbjct: 73 DVIIGNDVWIGHGATILPGVTIGD------GAVIAAG 103
>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine nucleotide
exchange factor (GEF) composed of five different
subunits (alpha, beta, gamma, delta and epsilon). eIF2B
is important for regenerating GTP-bound eIF2 during the
initiation process. This event is obligatory for eIF2 to
bind initiator methionyl-tRNA, forming the ternary
initiation complex. The eIF-2B epsilon subunit contains
an N-terminal domain that resembles a
dinucleotide-binding Rossmann fold, a central LbH domain
containing 4 turns, each containing three imperfect
tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of
unknown function that is present in eIF-4 gamma, eIF-5,
and eIF-2B epsilon. The epsilon and gamma subunits form
the catalytic subcomplex of eIF-2B, which binds eIF2 and
catalyzes guanine nucleotide exchange..
Length = 79
Score = 44.9 bits (107), Expect = 4e-05
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 122 QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGR 169
+++ +DV IEDG I ++V G IG+ + PGS+I GV IG
Sbjct: 33 NSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGSLISFGVVIGD 79
Score = 40.3 bits (95), Expect = 7e-04
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 21/97 (21%)
Query: 167 IGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVE 226
IGR SIG G++I +S+IG +IG + V I I D V
Sbjct: 2 IGRGTSIGEGTTIKNSVIGR------NCKIGKN--------------VVIDNSYIWDDVT 41
Query: 227 IGANSAIDRGTI-DDTIIGENTKIDNQVQIGHNVHIG 262
I I + D +IG+ I I V IG
Sbjct: 42 IEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78
Score = 37.2 bits (87), Expect = 0.007
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 16/65 (24%)
Query: 149 IGRKTYVGPG-----SVIGAGVRIGRNCS-----------IGAGSSIYSSLIGNSVILHS 192
IGR T +G G SVIG +IG+N I G +I+ S++ + ++
Sbjct: 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGK 61
Query: 193 GVRIG 197
G I
Sbjct: 62 GCTIP 66
>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity, however, some subfamilies in
this hierarchy also show activities related to ion
transport or translation initiation. Many are trimeric
in their active forms..
Length = 78
Score = 44.2 bits (105), Expect = 5e-05
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 242 IIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTY--------IGDNVLIGGQCGIAG 293
IGE KI + I V IG I I +T IGDNV IG I G
Sbjct: 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG 61
Query: 294 YLKIGDNVQIASKSGVL 310
+KIGDN I + + V
Sbjct: 62 GVKIGDNAVIGAGAVVT 78
Score = 39.9 bits (94), Expect = 0.001
Identities = 30/110 (27%), Positives = 39/110 (35%), Gaps = 32/110 (29%)
Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARG 206
V IG + P +VI V IG N +IG G+ I ++ N
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN-------------------- 40
Query: 207 VSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIG 256
II D VEIGAN+ I G IG+N I +
Sbjct: 41 --------EKNPTIIGDNVEIGANAVIHGG----VKIGDNAVIGAGAVVT 78
Score = 37.6 bits (88), Expect = 0.006
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 119 ISPQAFLGEDVKIEDGVVI--APMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAG 176
I +G++V I G VI A IG +G +VI GV+IG N IGAG
Sbjct: 15 IRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAG 74
Query: 177 SSI 179
+ +
Sbjct: 75 AVV 77
Score = 35.7 bits (83), Expect = 0.018
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGA--------GVRIGRNCSIGAGSSIY 180
V I +GV I P AV+ V IG +GPG+VIGA IG N IGA
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGAN---- 56
Query: 181 SSLIGNSVILHSGVRIGN 198
++I V + IG
Sbjct: 57 -AVIHGGVKIGDNAVIGA 73
Score = 35.7 bits (83), Expect = 0.018
Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIG--------RKTYVGPGSVIGAGVRIGRN 170
I + I VVI + PG IG T +G IGA I
Sbjct: 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGG 62
Query: 171 CSIGAGSSIYS 181
IG + I +
Sbjct: 63 VKIGDNAVIGA 73
Score = 31.1 bits (71), Expect = 0.52
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 259 VHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK--------IGDNVQIASKSGVL 310
V IG G I + I G IGDNV IG I IGDNV+I + + +
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60
Query: 311 KDIPAG 316
+ G
Sbjct: 61 GGVKIG 66
Score = 29.5 bits (67), Expect = 1.2
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 211 HKIVHIGRVIIQDKVEIGANSAIDRGTID----DTIIGENTKIDNQVQIGHNVHIGCGCI 266
K V G V+I D V IG + I T TIIG+N +I I V IG +
Sbjct: 11 PKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAV 70
Query: 267 I 267
I
Sbjct: 71 I 71
Score = 28.0 bits (63), Expect = 4.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIG 162
I D V I AV++ GV+IG +G G+V+
Sbjct: 44 PTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT 78
>gnl|CDD|100041 cd03350, LbH_THP_succinylT,
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase
catalyzes the conversion of tetrahydrodipicolinate and
succinyl-CoA to N-succinyltetrahydrodipicolinate and
CoA. It is the committed step in the succinylase pathway
by which bacteria synthesize L-lysine and
meso-diaminopimelate, a component of peptidoglycan. The
enzyme is homotrimeric and each subunit contains an
N-terminal region with alpha helices and hairpin loops,
as well as a C-terminal region with a left-handed
parallel alpha-helix (LbH) structural motif encoded by
hexapeptide repeat motifs..
Length = 139
Score = 42.8 bits (101), Expect = 2e-04
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 28/120 (23%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
+ P A + + I G V+ + V G + T V + +G+ +IG+N + AG+
Sbjct: 4 VPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAV 63
Query: 179 IYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238
I L + + VII+D V IGAN + G I
Sbjct: 64 IGGVL----------------------------EPLQATPVIIEDDVFIGANCEVVEGVI 95
Score = 38.9 bits (91), Expect = 0.002
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 220 IIQDKVEIGANSAIDRGTIDD--TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS- 276
II+D IG + + + + + E T +D+ +G IG + + I G
Sbjct: 9 IIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVL 68
Query: 277 -------TYIGDNVLIGGQCGIAGYLKIGDNVQIA 304
I D+V IG C + + +G +A
Sbjct: 69 EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLA 103
Score = 30.8 bits (70), Expect = 0.52
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSI 173
V IED V I V GV VG G+V+ AGV + ++ I
Sbjct: 76 VIIEDDVFIGANCEVVEGV------IVGKGAVLAAGVVLTQSTPI 114
>gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose
pyrophosphorylase/mannose-1-phosphate
guanylyltransferase [Cell wall/membrane/envelope
biogenesis].
Length = 371
Score = 42.1 bits (99), Expect = 2e-04
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGR-----NCSIGAGSSIYSSLI 184
KI V++ +A + IG +GP I GVR+ S I SS++
Sbjct: 260 KIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIV 319
Query: 185 GNSVILHSGVRIGN 198
G +V + RI
Sbjct: 320 GWNVPIGIWARIDK 333
Score = 39.1 bits (91), Expect = 0.002
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 216 IGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275
+G V++ IG N +I + +IG +I++ V++ + I + I+
Sbjct: 262 VGNVLVDSIASIGENCSIGP----NVVIGPRVRIEDGVRLQDST-ILGADYYETHSEIS- 315
Query: 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGV 309
S+ +G NV IG I +G NV +A + V
Sbjct: 316 SSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYV 349
Score = 32.1 bits (73), Expect = 0.25
Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 20/132 (15%)
Query: 144 YPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGY 203
PG +I V + IG IG N IG I + +
Sbjct: 256 LPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETH---- 311
Query: 204 ARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQ--VQIGHNVHI 261
I I+ V IG + ID+ + ++G+N + ++ V G + I
Sbjct: 312 ----------SEISSSIVGWNVPIGIWARIDK----NAVLGKNVIVADEDYVNEGSGLPI 357
Query: 262 GCGCIIVSQVGI 273
G +V + I
Sbjct: 358 KSGITVVLKPAI 369
Score = 30.2 bits (68), Expect = 0.96
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
+ A +GE+ I VVI P + GV + T +G + I +
Sbjct: 267 VDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILG-------ADYYETHSEISSSIV 319
Query: 179 IYSSLIGNSVILHSGVRIGND 199
++ IG + +G +
Sbjct: 320 GWNVPIGIWARIDKNAVLGKN 340
>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH)
domain of a group of proteins with similarity to
glucose-1-phosphate adenylyltransferase: Included in
this family are glucose-1-phosphate adenylyltransferase,
mannose-1-phosphate guanylyltransferase, and the
eukaryotic translation initiation factor eIF-2B
subunits, epsilon and gamma. Most members of this family
contains an N-terminal catalytic domain that resembles a
dinucleotide-binding Rossmann fold, followed by a LbH
fold domain with at least 4 turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an
additional domain of unknown function at the C-terminus.
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity..
Length = 79
Score = 41.1 bits (97), Expect = 4e-04
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 160 VIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRV 219
+IG IG N I +S+IG++V + GV I N
Sbjct: 1 LIGESTVIGENAIIK------NSVIGDNVRIGDGVTITNS-------------------- 34
Query: 220 IIQDKVEIGANSAIDRGTIDD-TIIGENTKIDNQVQIGHNVHIGC 263
I+ D V IGANS I I D +IGEN ++ N IG +V +
Sbjct: 35 ILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79
Score = 40.3 bits (95), Expect = 9e-04
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 220 IIQDKVEIGANSAIDRGTI-DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTY 278
+I + IG N+ I I D+ IG+ I N + + NV IG +IV +
Sbjct: 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSI-LMDNVTIGANSVIVDSI------- 52
Query: 279 IGDNVLIGGQCGIAGYLKIGDNVQI 303
IGDN +IG + IGD+V +
Sbjct: 53 IGDNAVIGENVRVVNLCIIGDDVVV 77
Score = 39.5 bits (93), Expect = 0.001
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 145 PGVEIGRKTYVGPGSVIGAGVRIG-----------RNCSIGAGSSIYSSLIGNSVILHSG 193
IG + SVIG VRIG N +IGA S I S+IG++ ++
Sbjct: 4 ESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGEN 62
Query: 194 VRIGN 198
VR+ N
Sbjct: 63 VRVVN 67
>gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B, gamma
subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal
structure and biogenesis].
Length = 433
Score = 41.1 bits (96), Expect = 5e-04
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 152 KTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIH 211
K YV +++GA +G N IG S+I S+IG++ + V++ N V +
Sbjct: 322 KNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSIL--MDNVV-VG 378
Query: 212 KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIG 262
V+I II +IG+ S + + IIG ++ + + G V +
Sbjct: 379 DGVNIENSIIGMGAQIGSGS-----KLKNCIIGPGYVVEAKGKHGGEVLVS 424
>gnl|CDD|36673 KOG1460, KOG1460, KOG1460, GDP-mannose pyrophosphorylase
[Carbohydrate transport and metabolism, Cell
wall/membrane/envelope biogenesis, Posttranslational
modification, protein turnover, chaperones].
Length = 407
Score = 41.1 bits (96), Expect = 5e-04
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIG 185
G +I V I P A V+P +IG +G +G GVR+ R I + I
Sbjct: 280 GTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRL-RESIILDDAEIEE---- 334
Query: 186 NSVILHS 192
N+V+LHS
Sbjct: 335 NAVVLHS 341
>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p25 is part of the pointed-end
subcomplex in dynactin that also includes p26, p27, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
indicating a left-handed parallel beta helix (LbH)
structural domain. Proteins containing hexapeptide
repeats are often enzymes showing acyltransferase
activity..
Length = 161
Score = 40.7 bits (96), Expect = 6e-04
Identities = 44/158 (27%), Positives = 57/158 (36%), Gaps = 47/158 (29%)
Query: 183 LIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGR-VIIQDKVEIGANSAIDRGTI--- 238
++ I+ S V I RG D+ + IGR I+ + I +
Sbjct: 23 VLNGKTIIQSDVII--------RG--DLATV-SIGRYCILSEGCVIRPPFKKFSKGVAFF 71
Query: 239 -----DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAG 293
D IGEN + N QIG VHIG C+I G+ I
Sbjct: 72 PLHIGDYVFIGENCVV-NAAQIGSYVHIGKNCVI-------------------GRRCI-- 109
Query: 294 YLKIGDNVQIASKSGVLKD--IPAGQQYGGMPARPIGE 329
I D V+I + V D IP G PAR IGE
Sbjct: 110 ---IKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGE 144
Score = 31.0 bits (71), Expect = 0.53
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 125 LGEDVKIEDGVVIAPMAVVYPGVE------IGRKTYVGPGSV-----IGAGVRIGRNCSI 173
+G + +G VI P + IG ++G V IG+ V IG+NC I
Sbjct: 45 IGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVI 104
Query: 174 GAGSSIY 180
G I
Sbjct: 105 GRRCIIK 111
Score = 27.2 bits (61), Expect = 7.0
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 123 AFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRN 170
A +G V I VI ++ V+I T V P +VI +
Sbjct: 90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGR 137
>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine nucleotide
exchange factor (GEF) composed of five different
subunits (alpha, beta, gamma, delta and epsilon). eIF2B
is important for regenerating GTP-bound eIF2 during the
initiation process. This event is obligatory for eIF2 to
bind initiator methionyl-tRNA, forming the ternary
initiation complex. The eIF-2B gamma subunit contains an
N-terminal domain that resembles a dinucleotide-binding
Rossmann fold and a C-terminal LbH domain with 4 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
The epsilon and gamma subunits form the catalytic
subcomplex of eIF-2B, which binds eIF2 and catalyzes
guanine nucleotide exchange..
Length = 81
Score = 37.9 bits (89), Expect = 0.004
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 242 IIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNV 301
++GENT++ + I +V IG C I +V I I DNV I C + + IG+
Sbjct: 1 LVGENTQVGEKTSIKRSV-IGANCKIGKRVKITNCV-IMDNVTIEDGCTLENCI-IGNGA 57
Query: 302 QIASKSGVLKD 312
I K LKD
Sbjct: 58 VIGEKC-KLKD 67
Score = 32.9 bits (76), Expect = 0.14
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 149 IGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGN 198
+G T VG + I V IG NC IG I + +I ++V + G + N
Sbjct: 2 VGENTQVGEKTSIKRSV-IGANCKIGKRVKITNCVIMDNVTIEDGCTLEN 50
>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by
uncharacterized proteins with similarity to the protein
product of the E. coli paaY gene, which is part of the
paa gene cluster responsible for phenylacetic acid
degradation. Proteins in this group are expected to
adopt the left-handed parallel beta-helix (LbH)
structure. They contain imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Similarity to gamma carbonic anhydrase and
Ferripyochelin Binding Protein (FBP) may suggest metal
binding capacity..
Length = 155
Score = 35.4 bits (82), Expect = 0.023
Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 54/184 (29%)
Query: 154 YVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKI 213
+V P +V+ V IG+NC IG +S+ RG
Sbjct: 8 FVHPTAVLIGDVIIGKNCYIGPHASL-------------------------RG------- 35
Query: 214 VHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGI 273
GR++I+D + N I DT++ EN HIG G I +
Sbjct: 36 -DFGRIVIRDGANVQDNCVIHGFPGQDTVLEENG------------HIGHGAI------L 76
Query: 274 AGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK--DIPAGQQYGGMPARPIGEYL 331
G T IG N L+G + IG+ + + + V IP G PA+ I E
Sbjct: 77 HGCT-IGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELS 135
Query: 332 RHMV 335
V
Sbjct: 136 DEEV 139
Score = 33.1 bits (76), Expect = 0.11
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 28/109 (25%)
Query: 139 PMAVVYPGVEIGRKTYVGPGS---------VIGAGVRIGRNCSIGAGSSIYSSL-----I 184
P AV+ V IG+ Y+GP + VI G + NC I + L I
Sbjct: 11 PTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHI 70
Query: 185 GNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAI 233
G+ ILH G IG + +V + V++ D IG S +
Sbjct: 71 GHGAILH-GCTIGR------------NALVGMNAVVM-DGAVIGEESIV 105
Score = 30.4 bits (69), Expect = 0.83
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 28/103 (27%)
Query: 113 SSFEGGISPQAFLGEDVKIEDGVVIAPMA---------VVYPGVEI----------GRKT 153
SSF + P A L DV I I P A V+ G + G+ T
Sbjct: 6 SSF---VHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDT 62
Query: 154 YVGPGSVIG-----AGVRIGRNCSIGAGSSIY-SSLIGNSVIL 190
+ IG G IGRN +G + + ++IG I+
Sbjct: 63 VLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEESIV 105
Score = 29.6 bits (67), Expect = 1.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 124 FLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
F G+D +E+ I A+++ G IGR VG +V+ G IG +GA +
Sbjct: 57 FPGQDTVLEENGHIGHGAILH-GCTIGRNALVGMNAVVMDGAVIGEESIVGAMA 109
>gnl|CDD|30797 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 393
Score = 35.2 bits (81), Expect = 0.027
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 173 IGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSA 232
S + +SL+ I+ V N RGV I K I +I VEIG +
Sbjct: 288 FVNDSEVSNSLVAGGCIISGTVE--NSVLF--RGVR-IGKGSVIENSVIMPDVEIGEGAV 342
Query: 233 IDRGTID-DTIIGENTKIDNQVQ 254
+ R ID + +IGE I
Sbjct: 343 LRRAIIDKNVVIGEGVVIGGDKP 365
Score = 33.2 bits (76), Expect = 0.10
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVE---IGRKTYVGPGSVIGAGVRIGRNCSIGA 175
P A D ++ + +V A ++ VE + R +G GSVI V I + IG
Sbjct: 282 NLPPAKFVNDSEVSNSLV-AGGCIISGTVENSVLFRGVRIGKGSVIENSV-IMPDVEIGE 339
Query: 176 GSSIYSSLIGNSVILHSGVRIGNDGFGYAR-GVSDIHKIVHIGR-VIIQDKVEI 227
G+ + ++I +V++ GV IG D R IV + + ++I+ +
Sbjct: 340 GAVLRRAIIDKNVVIGEGVVIGGDKPEEDRKRFRSEEGIVVVPKGMVIKLDIME 393
>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase,
C-terminal Left-handed parallel beta helix (LbH) domain:
Glucose-1-phosphate adenylyltransferase is also known as
ADP-glucose synthase or ADP-glucose pyrophosphorylase.
It catalyzes the first committed and rate-limiting step
in starch biosynthesis in plants and glycogen
biosynthesis in bacteria. It is the enzymatic site for
regulation of storage polysaccharide accumulation in
plants and bacteria. The enzyme is a homotetramer, with
each subunit containing an N-terminal catalytic domain
that resembles a dinucleotide-binding Rossmann fold and
a C-terminal LbH fold domain with at 5 turns, each
containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
The LbH domain is involved in cooperative allosteric
regulation and oligomerization..
Length = 104
Score = 33.2 bits (77), Expect = 0.11
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 30/115 (26%)
Query: 159 SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGR 218
S++ G I +G ++ +S++ V + SG + +
Sbjct: 13 SLVSEGCII-------SGGTVENSVLFRGVRVGSGSVVED-------------------- 45
Query: 219 VIIQDKVEIGANSAIDRGTID-DTIIGENTKI--DNQVQIGHNVHIGCGCIIVSQ 270
+I V IG N+ I R ID + +I + I D + G ++V +
Sbjct: 46 SVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGDPEEDRARFYVTEDGIVVVGK 100
Score = 28.6 bits (65), Expect = 2.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 125 LGEDVKIEDGVVIAPMAVVYPGVEIGRKTY-----VGPGSVIGAGVRIG 168
L V++ G V+ +V+ P V IGR + VI GV IG
Sbjct: 31 LFRGVRVGSGSVVED-SVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIG 78
Score = 28.6 bits (65), Expect = 3.0
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 235 RGTIDDTIIG-----ENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQC 289
RG + ++++ ++N V + V +G G ++ V I + IG N +I
Sbjct: 7 RGEVKNSLVSEGCIISGGTVENSV-LFRGVRVGSGSVVEDSV-IMPNVGIGRNAVIRR-A 63
Query: 290 GIAGYLKIGDNVQI 303
I + I D V I
Sbjct: 64 IIDKNVVIPDGVVI 77
>gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an
outer membrane protein which plays a role in iron
acquisition. It binds iron when it is complexed with
pyochelin. It adopts the left-handed parallel beta-helix
(LbH) structure, and contains imperfect tandem repeats
of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity. Acyltransferase activity has
not been observed in this group..
Length = 154
Score = 32.9 bits (75), Expect = 0.12
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI 179
G +I D V I AVV+ G ++G VG G+++ G +IG + IGAG+ +
Sbjct: 59 GYPTEIGDYVTIGHNAVVH-GAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVV 111
Score = 32.9 bits (75), Expect = 0.14
Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 36/142 (25%)
Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGA---GVRIGRNCSIGAGSSIYSSLIGN 186
+I + P + V V IG T V +VI + IG+ ++ SI++
Sbjct: 2 RISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTD---- 57
Query: 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI-DDTIIGE 245
GY I D V IG N+ + + + I+G
Sbjct: 58 --------------HGY--------------PTEIGDYVTIGHNAVVHGAKVGNYVIVGM 89
Query: 246 NTKIDNQVQIGHNVHIGCGCII 267
+ N +IG +V IG G ++
Sbjct: 90 GAILLNGAKIGDHVIIGAGAVV 111
Score = 29.5 bits (66), Expect = 1.4
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 19/120 (15%)
Query: 119 ISPQAFLGE------DVKIEDGVVIAPMAVVYPGVE---IGRKTYVGPGSVI----GAGV 165
ISP+A++ DV I + + AV+ + IG+ + V I G
Sbjct: 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPT 62
Query: 166 RIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKV 225
IG +IG + ++ + +GN VI+ G + N + D H I+ G V+ K
Sbjct: 63 EIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLN-----GAKIGD-HVIIGAGAVVTPGKE 116
>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate
guanylyltransferase, C-terminal Left-handed parallel
beta helix (LbH) domain: Mannose-1-phosphate
guanylyltransferase is also known as GDP-mannose
pyrophosphorylase. It catalyzes the synthesis of
GDP-mannose from GTP and mannose-1-phosphate, and is
involved in the maintenance of cell wall integrity and
glycosylation. Similar to ADP-glucose pyrophosphorylase,
it contains an N-terminal catalytic domain that
resembles a dinucleotide-binding Rossmann fold and a
C-terminal LbH fold domain, presumably with 4 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity..
Length = 80
Score = 32.9 bits (75), Expect = 0.13
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 136 VIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVI 189
+I P A + +IG +GP IG GVR+ R C I + S++ S + +S++
Sbjct: 1 LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQR-CVILSNSTVRDHSWVKSSIV 54
Score = 28.3 bits (63), Expect = 2.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGR 151
I P A +G+ KI VVI P + GV + R
Sbjct: 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQR 34
>gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p27 is part of the pointed-end
subcomplex in dynactin that also includes p25, p26, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain the imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed
parallel beta helix (LbH) structural domain. Proteins
containing hexapeptide repeats are often enzymes showing
acyltransferase activity..
Length = 164
Score = 32.3 bits (74), Expect = 0.19
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLI 184
++IG S +G V I C IGAG + SS I
Sbjct: 84 LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEI 121
Score = 27.7 bits (62), Expect = 5.3
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 221 IQDKVEIGANSAID-RGTID----DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275
I+ V IG + + R TI IIGEN I+ QV I + + I
Sbjct: 14 IRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKD---PAEPKPMI-- 68
Query: 276 STYIGDNVL--IGGQCGIAGYLKIGDNVQIASKSGVLKD 312
IG N + +G +C LKIG+N SKS V K+
Sbjct: 69 ---IGSNNVFEVGCKCE---ALKIGNNNVFESKSFVGKN 101
>gnl|CDD|100059 cd05635, LbH_unknown, Uncharacterized proteins, Left-handed
parallel beta-Helix (LbH) domain: Members in this group
are uncharacterized bacterial proteins containing a LbH
domain with multiple turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity..
Length = 101
Score = 32.2 bits (74), Expect = 0.21
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSV 188
+ I VI P AV+ V IG + V G+ I IG C IG + +S+
Sbjct: 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGE-------VEDSI 64
Query: 189 ILHSGVRIGNDGF 201
I +DGF
Sbjct: 65 I-EGYSNKQHDGF 76
>gnl|CDD|39245 KOG4042, KOG4042, KOG4042, Dynactin subunit p27/WS-3, involved in
transport of organelles along microtubules
[Intracellular trafficking, secretion, and vesicular
transport, Cytoskeleton].
Length = 190
Score = 30.0 bits (67), Expect = 0.89
Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 19/162 (11%)
Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189
E V IAP AVV +I + G V+ I IY IG + I
Sbjct: 4 MTETSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVF-----IATAGPIY---IGENNI 55
Query: 190 LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249
+ I N A SD + + IG + E+G S+ + +G+ I
Sbjct: 56 IEEYAVIRNRLEPGAVWDSD-GQPMIIGT---WNVFEVGCKSSAKK-------VGDRNVI 104
Query: 250 DNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGI 291
+++ +G V + GC + ++ + + +N + G +
Sbjct: 105 ESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNL 146
>gnl|CDD|100054 cd04649, LbH_THP_succinylT_putative, Putative
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (THP succinyltransferase),
C-terminal left-handed parallel alpha-helix (LbH)
domain: This group is composed of mostly uncharacterized
proteins containing an N-terminal domain of unknown
function and a C-terminal LbH domain with similarity to
THP succinyltransferase LbH. THP succinyltransferase
catalyzes the conversion of tetrahydrodipicolinate and
succinyl-CoA to N-succinyltetrahydrodipicolinate and
CoA. It is the committed step in the succinylase pathway
by which bacteria synthesize L-lysine and
meso-diaminopimelate, a component of peptidoglycan. The
enzyme is trimeric and displays the left-handed parallel
alpha-helix (LbH) structural motif encoded by the
hexapeptide repeat motif..
Length = 147
Score = 27.8 bits (62), Expect = 4.5
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 143 VYPGVEIGRKTYVGPGSVI-----GAG---VRIGRNCSIGAGSSIYSSLIGNSVILHSGV 194
+ GV +G+ + VG G+ I G G + IG+ C +GA S I SL G++ I+ +G+
Sbjct: 44 ISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGIGISL-GDNCIVEAGL 102
Query: 195 RI 196
+
Sbjct: 103 YV 104
>gnl|CDD|30504 COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein)
[Inorganic ion transport and metabolism].
Length = 510
Score = 27.2 bits (60), Expect = 6.5
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 241 TIIGENTKIDNQVQIGHNVHI-----GCGCIIVSQVGIAGSTYIGDNVLIGGQ 288
II + ++ + +HI GCG ++++G+ G G V +GG
Sbjct: 401 RIIARLEDLLDKHGLPITLHISGCPNGCGRPHLAEIGLVGKAKGGYQVYLGGG 453
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.140 0.407
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,117,480
Number of extensions: 226811
Number of successful extensions: 1278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 161
Length of query: 347
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 252
Effective length of database: 4,210,882
Effective search space: 1061142264
Effective search space used: 1061142264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)