RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl]
glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (347 letters)



>gnl|CDD|179158 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase; Provisional.
          Length = 343

 Score =  401 bits (1032), Expect = e-112
 Identities = 148/331 (44%), Positives = 197/331 (59%), Gaps = 8/331 (2%)

Query: 11  KGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAI 70
             + L +LA+ +GA L+ +  G+  I  ++ +  A  G IS++ + K+   +   KA A+
Sbjct: 1   MSLTLAELAELLGAELVGD--GDIEITGVASLEEAGPGQISFLANPKYRKQLATTKAGAV 58

Query: 71  ICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVK 130
           I S D   F+P     L+   P ++FA    +  P A      S   GI P A +    K
Sbjct: 59  IVSPDDAEFVPAGNALLVVKNPYLAFARLAQLFDPPATP----SPAAGIHPSAVIDPSAK 114

Query: 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSL-IGNSVI 189
           I +GV I P AV+  GV IG    +G G+VIG GV+IG +C + A  +IY ++ IGN VI
Sbjct: 115 IGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVI 174

Query: 190 LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249
           +HSG  IG+DGFG+A       KI  +GRVII D VEIGAN+ IDRG +DDT+IGE  KI
Sbjct: 175 IHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKI 234

Query: 250 DNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGV 309
           DN VQI HNV IG    I +QVGIAGST IG   +IGGQ GIAG+L+IGD V I + SGV
Sbjct: 235 DNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294

Query: 310 LKDIPA-GQQYGGMPARPIGEYLRHMVMLSK 339
            K IP  G+   G+PA+P  E+LR    L +
Sbjct: 295 TKSIPEPGEYSSGIPAQPNKEWLRTAARLRR 325


>gnl|CDD|162561 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase.  This model describes LpxD, an enzyme
           for the biosynthesis of lipid A, a component
           oflipopolysaccharide (LPS) in the outer membrane outer
           leaflet of most Gram-negative bacteria. Some differences
           are found between lipid A of different species. This
           protein represents the third step from
           UDP-N-acetyl-D-glucosamine. The group added at this step
           generally is 14:0(3-OH) (myristate) but may vary; in
           Aquifex it appears to be 16:0(3-OH) (palmitate).
          Length = 324

 Score =  331 bits (850), Expect = 2e-91
 Identities = 153/324 (47%), Positives = 196/324 (60%), Gaps = 11/324 (3%)

Query: 18  LAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIV 77
           LA+ +GA L     G+ +I  ++P+ +A    I+++ + K+L +++  +A A+I S D  
Sbjct: 2   LAERLGAELKGN--GDIVITGVAPLEKAKANHITFLANPKYLKHLKSSQAGAVIVSPDDQ 59

Query: 78  PFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVI 137
             +P     L+   P ++FA    +  P          E GI P A +    KI DGV I
Sbjct: 60  -GLPAKCAALVVKDPYLAFAKVAELFDPPPKR------EAGIHPTAVVDPSAKIGDGVTI 112

Query: 138 APMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVRI 196
            P  V+  GVEIG    +GPG VIG  V IG    I     IY    +G +VI+HSG  I
Sbjct: 113 GPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172

Query: 197 GNDGFGYARGVSDIH-KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQI 255
           G+DGFGYA   +  H KI  IGRVII+D VEIGAN+ IDRG  DDTIIGE TKIDN VQI
Sbjct: 173 GSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQI 232

Query: 256 GHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPA 315
            HN  IG  CIIV+QVGIAGST IG NV+IGGQ G+AG+L+IGDNV I +KSGV K IP 
Sbjct: 233 AHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSIPP 292

Query: 316 GQQYGGMPARPIGEYLRHMVMLSK 339
              YGG+PARP  E+LR    + +
Sbjct: 293 PGVYGGIPARPNKEWLRIAAKVKR 316


>gnl|CDD|179994 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase;
           Provisional.
          Length = 262

 Score =  101 bits (254), Expect = 3e-22
 Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 37/218 (16%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
           I P A +    KI + V I P  V+ P V IG  T +G   VI     IG+N  I   +S
Sbjct: 5   IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFAS 64

Query: 179 IYSSLIGNSVILHSGVRIGND--GFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRG 236
                            IG D     Y    +         R++I D   I     I+RG
Sbjct: 65  -----------------IGEDPQDLKYKGEPT---------RLVIGDNNTIREFVTINRG 98

Query: 237 TIDD---TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAG 293
           T+     T IG+N  +   V + H+  +G   I+ +   +AG   +GD  +IGG   +  
Sbjct: 99  TVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQ 158

Query: 294 YLKIGDNVQIASKSGVLKDIPAGQQYG---GMPARPIG 328
           +++IG +  +   SGV +D+P    Y    G PAR  G
Sbjct: 159 FVRIGAHAMVGGMSGVSQDVPP---YVLAEGNPARLRG 193


>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 458

 Score = 99.1 bits (248), Expect = 1e-21
 Identities = 66/192 (34%), Positives = 92/192 (47%), Gaps = 26/192 (13%)

Query: 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL 190
           I+  V I    V+ PGV I   T +G   VIG G RI  + +IG G +I +S+I  S + 
Sbjct: 262 IDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRI-VDSTIGDGVTITNSVIEESKV- 319

Query: 191 HSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKID 250
              V +G   F + R  S I + V IG     + VE           I  + IGE TK+ 
Sbjct: 320 GDNVTVGP--FAHLRPGSVIGEEVKIG-----NFVE-----------IKKSTIGEGTKVS 361

Query: 251 N-----QVQIGHNVHIGCGCIIVSQVGIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIA 304
           +       ++G NV+IGCG I V+  G     T IGDN  IG    +   + +GDN  IA
Sbjct: 362 HLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIA 421

Query: 305 SKSGVLKDIPAG 316
           + S + KD+P  
Sbjct: 422 AGSTITKDVPED 433



 Score = 32.1 bits (74), Expect = 0.20
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 241 TIIG-ENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGD 299
           TII  E+T ID  V+IG +  I  G +      I G+T IG++ +IG    I     IGD
Sbjct: 253 TIIDPESTYIDADVEIGSDTVIEPGVV------IKGNTVIGEDCVIGPGSRIVDS-TIGD 305

Query: 300 NVQIAS 305
            V I +
Sbjct: 306 GVTITN 311



 Score = 31.7 bits (73), Expect = 0.27
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
           + P + +GE+VKI + V I           IG  T V   + IG    +G N +IG G+
Sbjct: 331 LRPGSVIGEEVKIGNFVEIK-------KSTIGEGTKVSHLTYIGDAE-VGENVNIGCGT 381


>gnl|CDD|130911 TIGR01852, lipid_A_lpxA,
           acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
           O-acyltransferase.  This model describes LpxA, an enzyme
           for the biosynthesis of lipid A, a component
           oflipopolysaccharide (LPS) in the outer membrane outer
           leaflet of most Gram-negative bacteria. Some differences
           are found between lipid A of different species, but this
           protein represents the first step (from
           UDP-N-acetyl-D-glucosamine) and appears to be conserved
           in function. Proteins from this family contain many
           copies of the bacterial transferase hexapeptide repeat
           (pfam00132).
          Length = 254

 Score = 97.7 bits (244), Expect = 4e-21
 Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 11/196 (5%)

Query: 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI-YSSLIGNSVILHSGVR 195
           I P A++ PG EIG    +GP  ++G GV+IG    + +   I   + IG    +  G  
Sbjct: 1   IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAV 60

Query: 196 IGND--GFGYARGVSDIHKIVHIG-RVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQ 252
           IG       Y    ++    + IG    I++ V I   +A   G    T IG N  +   
Sbjct: 61  IGGVPQDLKYKGERTE----LIIGDNNTIREFVTINRGTASGGGV---TRIGNNNLLMAY 113

Query: 253 VQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKD 312
             I H+  +G   I+ +   +AG   +GD  +IGG   +  +++IG    I   S V KD
Sbjct: 114 SHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD 173

Query: 313 IPAGQQYGGMPARPIG 328
           +P      G  AR  G
Sbjct: 174 VPPYGLVEGNRARLRG 189


>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase;
           Provisional.
          Length = 255

 Score = 97.0 bits (242), Expect = 7e-21
 Identities = 61/213 (28%), Positives = 88/213 (41%), Gaps = 26/213 (12%)

Query: 118 GISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
            I P A +    K+  GV I P AV+   VEIG  T++GP +VI    RIG+N  I    
Sbjct: 1   MIHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKI---- 56

Query: 178 SIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGT 237
                        H G  +G++         D        R+ I D+  I     I RGT
Sbjct: 57  -------------HQGAVVGDEP-------QDFTYKGEESRLEIGDRNVIREGVTIHRGT 96

Query: 238 IDD--TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYL 295
                T IG +  +     + H+  IG   I+V+   +AG   +GD  +I G C +  + 
Sbjct: 97  KGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFC 156

Query: 296 KIGDNVQIASKSGVLKDIPAGQQYGGMPARPIG 328
           +IG    +A  S + KD+P      G P    G
Sbjct: 157 RIGALAMMAGGSRISKDVPPYCMMAGHPTNVHG 189


>gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine
           diphosphorylase/glucosamine-1-phosphate
           N-acetyltransferase.  This protein is a bifunctional
           enzyme, GlmU, which catalyzes last two reactions in the
           four-step pathway of UDP-N-acetylglucosamine
           biosynthesis from fructose-6-phosphate. Its reaction
           product is required from peptidoglycan biosynthesis, LPS
           biosynthesis in species with LPS, and certain other
           processes.
          Length = 451

 Score = 91.2 bits (227), Expect = 4e-19
 Identities = 63/199 (31%), Positives = 89/199 (44%), Gaps = 29/199 (14%)

Query: 124 FLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI--YS 181
            +   V+I   V I P  ++   V+IG    +GPG VI       +N  IG+   I  YS
Sbjct: 257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVI-------KNSVIGSNVVIKAYS 309

Query: 182 SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD- 240
            L G+ +    G  +G   F   R  S +   VHIG       VE   N+ I +G+    
Sbjct: 310 VLEGSEIG--EGCDVGP--FARLRPGSVLGAGVHIGNF-----VET-KNARIGKGSKAGH 359

Query: 241 -TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKIG 298
            + +G+        +IG NV+IG G I  +  G     T IGD V IG    +   +K+G
Sbjct: 360 LSYLGD-------AEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVG 412

Query: 299 DNVQIASKSGVLKDIPAGQ 317
           D   IA+ S V KD+P G 
Sbjct: 413 DGATIAAGSTVTKDVPEGA 431



 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 18/87 (20%)

Query: 217 GRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS 276
            R  I+  VEIG           D  I  N  ++ +V+IG +V IG GC+I + V     
Sbjct: 254 ARFDIRGTVEIGR----------DVEIDPNVILEGKVKIGDDVVIGPGCVIKNSV----- 298

Query: 277 TYIGDNVLIGGQCGIAGYLKIGDNVQI 303
             IG NV+I     + G  +IG+   +
Sbjct: 299 --IGSNVVIKAYSVLEGS-EIGEGCDV 322



 Score = 34.6 bits (80), Expect = 0.041
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 245 ENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIA 304
               I   V+IG +V I    I      + G   IGD+V+IG  C I     IG NV I 
Sbjct: 254 ARFDIRGTVEIGRDVEIDPNVI------LEGKVKIGDDVVIGPGCVIKN-SVIGSNVVIK 306

Query: 305 SKS 307
           + S
Sbjct: 307 AYS 309


>gnl|CDD|172831 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 459

 Score = 81.3 bits (201), Expect = 4e-16
 Identities = 58/196 (29%), Positives = 85/196 (43%), Gaps = 23/196 (11%)

Query: 133 DGVVIAPMAVVY--PGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL 190
            GV +      Y   GV IGR T + PG  I    RIG  C+I  G  I    IG+ V +
Sbjct: 253 AGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTV 312

Query: 191 HSG-----VRIGNDG----FGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDT 241
            +G       +G+D       + R  +++   V IG  +   K+ +G  S         T
Sbjct: 313 KAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASH----LT 368

Query: 242 IIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG-STYIGDNVLIGGQCGIAGYLKIGDN 300
            +G+ T       IG NV+IGCG I  +  G+    T I D+V +G        + +G N
Sbjct: 369 YLGDAT-------IGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRN 421

Query: 301 VQIASKSGVLKDIPAG 316
             IA+ + V KD+P  
Sbjct: 422 SLIAAGTTVTKDVPPD 437



 Score = 32.0 bits (73), Expect = 0.21
 Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 39/130 (30%)

Query: 127 EDVKIEDGVVIAPMAVVYPG------VEIG-----RKTYVGPGS------VIGAGVRIGR 169
           ED  + D V I PMA + PG      V+IG     +K  +G GS       +G    IGR
Sbjct: 319 EDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLG-DATIGR 377

Query: 170 NCSIGAGSSI--YSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEI 227
           N +IG G+    Y  +  +  ++   V +G+D                   V     V +
Sbjct: 378 NVNIGCGTITCNYDGVKKHRTVIEDDVFVGSD-------------------VQFVAPVTV 418

Query: 228 GANSAIDRGT 237
           G NS I  GT
Sbjct: 419 GRNSLIAAGT 428


>gnl|CDD|184644 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 448

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 58/207 (28%), Positives = 85/207 (41%), Gaps = 44/207 (21%)

Query: 131 IEDGVVIAPMAVVY--PGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSV 188
           +E+GV I      Y    VEIG  T + P + I    RIG +C IG  + I    IGN+V
Sbjct: 238 MENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNV 297

Query: 189 -ILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGT---------- 237
            I+ S                         + +I+D V +G  S +  GT          
Sbjct: 298 KIIRSECE----------------------KSVIEDDVSVGPFSRLREGTVLKKSVKIGN 335

Query: 238 ---IDDTIIGENTKIDN-----QVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQ 288
              I  + IGENTK  +        +G NV+IG G I  +  G   + T+I D   IG  
Sbjct: 336 FVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSN 395

Query: 289 CGIAGYLKIGDNVQIASKSGVLKDIPA 315
             +   ++IG    I + S + +D+P 
Sbjct: 396 SSLVAPVRIGKGALIGAGSVITEDVPP 422



 Score = 33.2 bits (76), Expect = 0.093
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 11/74 (14%)

Query: 123 AFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIG------AGVRIGRNCSIGAG 176
           A +G++V I  G +       Y G +    T++  G+ IG      A VRIG+   IGAG
Sbjct: 359 ATVGKNVNIGAGTITCN----YDGKK-KNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAG 413

Query: 177 SSIYSSLIGNSVIL 190
           S I   +   S+ L
Sbjct: 414 SVITEDVPPYSLAL 427


>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 450

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 18/188 (9%)

Query: 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL 190
           I + V + P  ++ P   +   T +G G  IG G  I  N  IG   ++  S++ +S I 
Sbjct: 259 ISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLI-ENSQIGENVTVLYSVVSDSQIG 317

Query: 191 HSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDR-GTIDDTIIGENTKI 249
             GV+IG   + + R  + I     IG  +   K ++G  S ++    I D  +GE    
Sbjct: 318 -DGVKIGP--YAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGE---- 370

Query: 250 DNQVQIGHNVHIGCGCIIVSQVGIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSG 308
                    V+IG G I  +  G+    T IGD    G    +   + +G++V +A+ S 
Sbjct: 371 --------QVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGST 422

Query: 309 VLKDIPAG 316
           + KD+P  
Sbjct: 423 ITKDVPDN 430



 Score = 35.3 bits (82), Expect = 0.023
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 9/62 (14%)

Query: 123 AFLGEDVKIEDGVVIAPMAVVYPGV-----EIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
           A LGE V I  G + A     Y GV      IG ++  G  SV+ A + +G + ++ AGS
Sbjct: 366 ATLGEQVNIGAGTITAN----YDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGS 421

Query: 178 SI 179
           +I
Sbjct: 422 TI 423



 Score = 34.5 bits (80), Expect = 0.040
 Identities = 39/167 (23%), Positives = 56/167 (33%), Gaps = 75/167 (44%)

Query: 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIG-----RNCSIGAGSSIYSS 182
           D +I DGV I P A            ++ P + IG+  RIG     +   +G GS     
Sbjct: 313 DSQIGDGVKIGPYA------------HLRPEAQIGSNCRIGNFVEIKKSQLGEGS----- 355

Query: 183 LIGNSVILHSGVRIGNDGFGYARGVSDIHKIVH---IGRVIIQDKVEIGANSAIDRGTI- 238
                                        K+ H   IG   + ++V IGA      GTI 
Sbjct: 356 -----------------------------KVNHLSYIGDATLGEQVNIGA------GTIT 380

Query: 239 --------DDTIIGENTKID-NQV-----QIGHNVHIGCGCIIVSQV 271
                     T+IG+ +K   N V      +G +V +  G  I   V
Sbjct: 381 ANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDV 427


>gnl|CDD|163332 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid
           O-acetyltransferase NeuD family.  These proteins contain
           repeats of the bacterial transferase hexapeptide
           (pfam00132), although often these do not register above
           the trusted cutoff.
          Length = 201

 Score = 63.7 bits (156), Expect = 6e-11
 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 218 RVIIQDKVEIGANSAIDRGTI--DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275
             I+     IG  + I  G +   D  IG+N  I+    + H+  IG    I   V ++G
Sbjct: 93  SAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSG 152

Query: 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPA 324
              IG+ V IG    I   + IG    + + + V KDIP G    G+PA
Sbjct: 153 GVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGVVVGVPA 201



 Score = 60.6 bits (148), Expect = 5e-10
 Identities = 33/115 (28%), Positives = 43/115 (37%), Gaps = 24/115 (20%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
           I P A +     I +G VI   AV+ P V IG    +  G+++     IG    I  G  
Sbjct: 90  IHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPG-- 147

Query: 179 IYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAI 233
                    V L  GV IG   F            +  G  IIQ  V IGA + +
Sbjct: 148 ---------VTLSGGVVIGEGVF------------IGAGATIIQ-GVTIGAGAIV 180



 Score = 56.7 bits (138), Expect = 8e-09
 Identities = 24/70 (34%), Positives = 34/70 (48%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
           I+  A +  D  I D V IAP   +  GV IG   ++G G+ I  GV IG    +GAG+ 
Sbjct: 126 INTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAV 185

Query: 179 IYSSLIGNSV 188
           +   +    V
Sbjct: 186 VTKDIPDGGV 195



 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 24/117 (20%)

Query: 134 GVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI-YSSLIGNSVILHS 192
             +I P A+V P   IG  T +  G+VI   VRIG N  I  G+ + +  +IG+ V +  
Sbjct: 87  ATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAP 146

Query: 193 GVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249
           GV +                    G V+I + V IGA + I    I    IG    +
Sbjct: 147 GVTLS-------------------GGVVIGEGVFIGAGATI----IQGVTIGAGAIV 180


>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
           N-acetyltransferase.  Alternate name:
           tetrahydrodipicolinate N-acetyltransferase. Note that
           IUBMB lists this alternate name as the accepted name.
           Unfortunately, the related succinyl transferase acting
           on the same substrate (EC:2.3.1.117, TIGR00695) uses the
           opposite standard. We have decided to give these two
           enzymes names which more clearly indicated that they act
           on the same substrate.
          Length = 231

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 10/120 (8%)

Query: 220 IIQDKVEIGANSAIDRGTIDD--TIIGENTKID------NQVQIGHNVHIGCGCII--VS 269
           II+D+V IG N+ I  G + +    IGE T ID       +  +G NVHIG G ++  V 
Sbjct: 94  IIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVI 153

Query: 270 QVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329
           +   A    I DNVLIG    I   +++G    +A+ + V +D+P      G+PA+ I +
Sbjct: 154 EPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVIKQ 213



 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 17/95 (17%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
           I P A + + V I D  VI   AV+  G EIG  T +   +V+G    +G+N  IGAG+ 
Sbjct: 89  IEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAV 148

Query: 179 IY---------------SSLIG-NSVILHSGVRIG 197
           +                + LIG N+VIL  GVR+G
Sbjct: 149 LAGVIEPPSAKPVVIEDNVLIGANAVILE-GVRVG 182



 Score = 29.0 bits (65), Expect = 2.0
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 122 QAFLGEDVKIEDGVVIAPMAVVYPG----VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
           +A +G++V I  G V+A   V+ P     V I     +G  +VI  GVR+G+   + AG+
Sbjct: 134 RATVGKNVHIGAGAVLA--GVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGA 191

Query: 178 SIYSSLIGNSVI 189
            +   +  N+V+
Sbjct: 192 IVTEDVPPNTVV 203


>gnl|CDD|177989 PLN02357, PLN02357, serine acetyltransferase.
          Length = 360

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 26/138 (18%)

Query: 211 HKIVH--------IGRVIIQDK------VEIGANSAIDRGTIDD----TIIGENTKIDNQ 252
           H+I H        I  ++IQ++      V+I   + I +G + D     +IGE   + N 
Sbjct: 199 HRIAHKLWTQGRKILALLIQNRVSEAFAVDIHPGAKIGQGILLDHATGVVIGETAVVGNN 258

Query: 253 VQIGHNVHIGCGCIIVSQVGIAGSTY--IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL 310
           V I HNV +G           +G  +  IGD VLIG    I G + IG+  +I + S VL
Sbjct: 259 VSILHNVTLG------GTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVL 312

Query: 311 KDIPAGQQYGGMPARPIG 328
           KD+P      G PAR IG
Sbjct: 313 KDVPPRTTAVGNPARLIG 330



 Score = 31.0 bits (70), Expect = 0.44
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 22/90 (24%)

Query: 112 ASSFEGGISPQAFLGEDVKIE--DGVVIAPMAVVYPGVEI--------------GRKTYV 155
           + +F   I P A +G+ + ++   GVVI   AVV   V I               R   +
Sbjct: 222 SEAFAVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKI 281

Query: 156 GPGSVIGAG------VRIGRNCSIGAGSSI 179
           G G +IGAG      + IG    IGAGS +
Sbjct: 282 GDGVLIGAGTCILGNITIGEGAKIGAGSVV 311


>gnl|CDD|182500 PRK10502, PRK10502, putative acyl transferase; Provisional.
          Length = 182

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 31/122 (25%)

Query: 224 KVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ-----VG------ 272
           K+ IG          D   IG++  + N  +I     IG  C+I SQ      G      
Sbjct: 71  KLTIG----------DYAWIGDDVWLYNLGEI----TIGAHCVI-SQKSYLCTGSHDYSD 115

Query: 273 -----IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327
                      IG+   +     +A  + IG    + ++S V K +PA     G PA PI
Sbjct: 116 PHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVPI 175

Query: 328 GE 329
             
Sbjct: 176 RP 177



 Score = 38.8 bits (91), Expect = 0.002
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 149 IGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSV 188
           IG   ++     +  GV IG    +GA SS++ SL  N++
Sbjct: 127 IGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTI 166


>gnl|CDD|172832 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 456

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 17/193 (8%)

Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIG 185
            E V+I     I P A +Y   EI   + +  G+VI +   + R+  + +G++I+S    
Sbjct: 261 PESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWL-RDAVVSSGATIHSFSHL 319

Query: 186 NSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGT-IDDTIIG 244
               +  G  +G   +   R  + + +   +G  +   K  +G  +  +  T + D  IG
Sbjct: 320 EGAEVGDGCSVGP--YARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIG 377

Query: 245 ENTKIDNQVQIGHNVHIGCGCIIVSQVGI-AGSTYIGDNVLIGGQCGIAGYLKIGDNVQI 303
                          +IG G I  +  G+    T IG+   IG    +   + IGD   +
Sbjct: 378 AGA------------NIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALV 425

Query: 304 ASKSGVLKDIPAG 316
            + S + KD+P G
Sbjct: 426 GAGSVITKDVPDG 438


>gnl|CDD|182235 PRK10092, PRK10092, maltose O-acetyltransferase; Provisional.
          Length = 183

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 18/87 (20%)

Query: 259 VHIGCGCIIVSQVGIAGSTY------------------IGDNVLIGGQCGIAGYLKIGDN 300
           + IG  C++   V I  +T+                  IG+NV IGG+  I   + IGDN
Sbjct: 94  IRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDN 153

Query: 301 VQIASKSGVLKDIPAGQQYGGMPARPI 327
           V +AS + V KD+P     GG PAR I
Sbjct: 154 VVVASGAVVTKDVPDNVVVGGNPARII 180



 Score = 32.5 bits (74), Expect = 0.19
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 125 LGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIG 174
           LG+ V I + V I   AV+ PGV IG    V  G+V+   V    N  +G
Sbjct: 126 LGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVP--DNVVVG 173



 Score = 30.2 bits (68), Expect = 0.85
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196
           V IG   ++G  +VI  GV IG N  + +G+ +   +  N V+  +  RI
Sbjct: 130 VTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARI 179



 Score = 27.9 bits (62), Expect = 4.3
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 165 VRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDK 224
           +RIG NC +  G  IY++    +  L    R  N G    + V+  + +   GR +I   
Sbjct: 94  IRIGDNCMLAPGVHIYTA----THPLDPVAR--NSGAELGKPVTIGNNVWIGGRAVINPG 147

Query: 225 VEIGANSAIDRGTI------DDTIIGEN 246
           V IG N  +  G +      D+ ++G N
Sbjct: 148 VTIGDNVVVASGAVVTKDVPDNVVVGGN 175


>gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase.
          Length = 294

 Score = 53.5 bits (128), Expect = 8e-08
 Identities = 42/120 (35%), Positives = 54/120 (45%), Gaps = 12/120 (10%)

Query: 212 KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQV 271
           +I  +  V I    +IG     D  T    +IGE   I N V I H+V +G         
Sbjct: 154 RISDVFAVDIHPAAKIGKGILFDHAT--GVVIGETAVIGNNVSILHHVTLG-------GT 204

Query: 272 GIAGSTY---IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIG 328
           G A       IGD VLIG    I G +KIG+  +I + S VL D+P      G PAR +G
Sbjct: 205 GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTTAVGNPARLVG 264



 Score = 32.7 bits (74), Expect = 0.15
 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 23/96 (23%)

Query: 107 AMHMEASS-FEGGISPQAFLGEDVKIE--DGVVIAPMAVVYPGVEI-------------- 149
           A+H   S  F   I P A +G+ +  +   GVVI   AV+   V I              
Sbjct: 150 ALHSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACG 209

Query: 150 GRKTYVGPGSVIGAG------VRIGRNCSIGAGSSI 179
            R   +G G +IGAG      V+IG    IGAGS +
Sbjct: 210 DRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVV 245


>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 446

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 30/192 (15%)

Query: 132 EDGV-VIAPMAVVYP-GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189
             GV +IAP  V +     IGR   + P  V G GV +     I A    +S L G  V 
Sbjct: 252 LAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHA----FSHLEGAHV- 306

Query: 190 LHSGVRIGNDGFGYAR---GVSDIHKIVHIGRVIIQDKVEIGANSAIDRGT-IDDTIIGE 245
              G  +G     YAR   G +++ +   +G  +     ++G  + ++  T I D  IG 
Sbjct: 307 -GEGAEVGP----YARLRPG-AELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGA 360

Query: 246 NTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKIGDNVQIA 304
                         +IG G I  +  G     T IG    IG    +   + IGD   IA
Sbjct: 361 GA------------NIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIA 408

Query: 305 SKSGVLKDIPAG 316
           S S + +D+P  
Sbjct: 409 SGSVITEDVPDD 420


>gnl|CDD|178340 PLN02739, PLN02739, serine acetyltransferase.
          Length = 355

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 41/125 (32%), Positives = 55/125 (44%), Gaps = 27/125 (21%)

Query: 209 DIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIV 268
           DIH    IG+ I+           +D GT    +IGE   I ++V I H V +G      
Sbjct: 207 DIHPAARIGKGIL-----------LDHGT--GVVIGETAVIGDRVSILHGVTLG------ 247

Query: 269 SQVGIAGST-----YIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMP 323
              G    T      IGD  L+G    I G + IG    +A+ S VLKD+P+     G P
Sbjct: 248 ---GTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNP 304

Query: 324 ARPIG 328
           A+ IG
Sbjct: 305 AKLIG 309



 Score = 35.8 bits (82), Expect = 0.015
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 17/93 (18%)

Query: 119 ISPQAFLGEDVKIE--DGVVIAPMAVVYPGVEI---------GRKT-----YVGPGSVIG 162
           I P A +G+ + ++   GVVI   AV+   V I         G++T      +G G+++G
Sbjct: 208 IHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLG 267

Query: 163 AGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGV 194
           A V I  N SIGAG+ + + SL+   V  HS V
Sbjct: 268 ACVTILGNISIGAGAMVAAGSLVLKDVPSHSMV 300


>gnl|CDD|130240 TIGR01172, cysE, serine O-acetyltransferase.  Cysteine
           biosynthesis.
          Length = 162

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 26/125 (20%)

Query: 213 IVHIGRVI----IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIV 268
           + +  RV+    I     IG    ID GT    +IGE   I + V I H V +G      
Sbjct: 52  LSNFIRVLTGVDIHPGARIGRGVFIDHGT--GVVIGETAVIGDDVTIYHGVTLG------ 103

Query: 269 SQVGIAGSTY--------IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYG 320
                 G+          +G+ V+IG    + G +++G+N +I + S VLKD+P G    
Sbjct: 104 ------GTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVV 157

Query: 321 GMPAR 325
           G+PAR
Sbjct: 158 GVPAR 162



 Score = 36.1 bits (84), Expect = 0.014
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 20/89 (22%)

Query: 119 ISPQAFLGEDVKIED--GVVIAPMAVV------YPGVEIG--------RKTYVGPGSVIG 162
           I P A +G  V I+   GVVI   AV+      Y GV +G        R   VG G +IG
Sbjct: 64  IHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIG 123

Query: 163 AGVRIGRNCSIGAGSSIYSSLIGNSVILH 191
           AG ++  N  +G  + I +    NSV+L 
Sbjct: 124 AGAKVLGNIEVGENAKIGA----NSVVLK 148


>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 482

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 41/199 (20%), Positives = 78/199 (39%), Gaps = 40/199 (20%)

Query: 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI- 189
           I+  V I    V++PG ++  +T +G  +V+G    +  + ++G G+S+  +    S I 
Sbjct: 268 IDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTL-TDVTVGEGASVVRTHGSESEIG 326

Query: 190 ----------LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGT-I 238
                     L  G  +G +G               +G  +      IG  + +   T +
Sbjct: 327 AGATVGPFTYLRPGTVLGEEG--------------KLGAFVETKNATIGRGTKVPHLTYV 372

Query: 239 DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKI 297
            D  IGE++            +IG   + V+  G+    T IG +V  G        + +
Sbjct: 373 GDADIGEHS------------NIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTV 420

Query: 298 GDNVQIASKSGVLKDIPAG 316
           GD     + + + +D+P G
Sbjct: 421 GDGAYTGAGTVIREDVPPG 439


>gnl|CDD|184645 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 430

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 49/160 (30%), Positives = 66/160 (41%), Gaps = 20/160 (12%)

Query: 159 SVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIG 217
             +  GVRI     I   S I + S+I  S+I +S V        + R  S+I K  HIG
Sbjct: 266 CELEEGVRILGKSKI-ENSHIKAHSVIEESIIENSDV----GPLAHIRPKSEI-KNTHIG 319

Query: 218 RVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG-S 276
             +     ++    A     + D  I E T            +IG G I  +  G     
Sbjct: 320 NFVETKNAKLNGVKAGHLSYLGDCEIDEGT------------NIGAGTITCNYDGKKKHK 367

Query: 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAG 316
           T IG NV IG    +   + I DNV IA+ S V KD+P G
Sbjct: 368 TIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKG 407


>gnl|CDD|172834 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 481

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 21/180 (11%)

Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL--HS---GVRIGNDG- 200
           V +GR   + PG ++    R+    +IGA S +  S++    ++  HS   G  +G    
Sbjct: 271 VTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSD 330

Query: 201 ---FGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGH 257
              F   R  + + + VHIG   ++ K     N+ +D G     +   +      V IG 
Sbjct: 331 VGPFARLRPGTVLGEGVHIGN-FVETK-----NARLDAG-----VKAGHLAYLGDVTIGA 379

Query: 258 NVHIGCGCIIVSQVGI-AGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAG 316
             ++G G I+ +  G+    + +G  V IG    +     +GD   IA+ S V  D+P G
Sbjct: 380 ETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVHDDVPEG 439


>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
           Provisional.
          Length = 380

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 36/138 (26%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
             P  ++ E+ K+++ + +    VVY  VE          SV+  GV++G          
Sbjct: 279 NLPPQYIAENAKVKNSL-VVEGCVVYGTVE---------HSVLFQGVQVGEG-------- 320

Query: 179 IYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238
              S++ +SVI+  G +IG +              V I R II +   IG    I  G  
Sbjct: 321 ---SVVKDSVIM-PGAKIGEN--------------VVIERAIIGENAVIGDGVIIGGGKE 362

Query: 239 DDTIIGENTKIDNQVQIG 256
             T+IGEN  I     IG
Sbjct: 363 VITVIGENEVIGVGTVIG 380


>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 456

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 21/168 (12%)

Query: 160 VIGAGVRIGRNCSIGAGSSIYSSLIGNSVILH-----SGVRIGNDG----FGYARGVSDI 210
           +I   V +G    IGAG  + + +IG+   +          +G       F   R  +++
Sbjct: 279 IIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAEL 338

Query: 211 HKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ 270
            +  H+G  +   K  +G  S         T +G+        +IG NV+IG G I  + 
Sbjct: 339 AEGAHVGNFVEMKKARLGKGSKAGH----LTYLGD-------AEIGDNVNIGAGTITCNY 387

Query: 271 VGIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQ 317
            G     T IGD+V +G    +   + +G    I + + V +D+   +
Sbjct: 388 DGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENE 435



 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 10/54 (18%)

Query: 235 RGTID---DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLI 285
           RGT+    D  I  N  I+  V +G+ V IG GC++ + V       IGD+  I
Sbjct: 263 RGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCV-------IGDDCEI 309



 Score = 31.9 bits (73), Expect = 0.28
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 17/74 (22%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVG-----PGSVIGAGVR------- 166
           ISP + + ED  +     I P A + PG E+    +VG       + +G G +       
Sbjct: 309 ISPYSVV-EDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL 367

Query: 167 ----IGRNCSIGAG 176
               IG N +IGAG
Sbjct: 368 GDAEIGDNVNIGAG 381



 Score = 28.5 bits (64), Expect = 2.9
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%)

Query: 262 GCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK---IGDNVQIASKSGVLKD 312
           G    I + V I G+  +G+ V IG  C     LK   IGD+ +I+  S V++D
Sbjct: 269 GRDVEIDTNVIIEGNVTLGNRVKIGAGC----VLKNCVIGDDCEISPYS-VVED 317


>gnl|CDD|181930 PRK09527, lacA, galactoside O-acetyltransferase; Reviewed.
          Length = 203

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 36/102 (35%), Positives = 45/102 (44%), Gaps = 18/102 (17%)

Query: 238 IDD--TIIGENTKIDNQVQI---GHNVHIGCGCIIVSQVGIAGSTY-----IGDNVLIGG 287
           +DD    IG+N  I   V +   GH VH         ++   G  Y     IG+NV IG 
Sbjct: 91  VDDYTVTIGDNVLIAPNVTLSVTGHPVHH--------ELRKNGEMYSFPITIGNNVWIGS 142

Query: 288 QCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329
              I   + IGDN  I + S V KDIP      G+P R I E
Sbjct: 143 HVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIRE 184



 Score = 28.8 bits (64), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
           + I + V I    V+ PGV IG  + +G GSV+
Sbjct: 132 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVV 164


>gnl|CDD|162818 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal
           domain of unknown function.  This domain is found
           exclusively in non-ribosomal peptide synthetases and
           always as the final domain in the polypeptide. This
           domain is roughly 700 amino acids in size and is found
           in polypeptides roughly twice that size.
          Length = 695

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 118 GISPQAFLGED-------VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRN 170
           G   Q  L ED       V I DG  + P A+V  GV +G  + +GP S++  G  +   
Sbjct: 628 GSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPA- 686

Query: 171 CSIGAGSSI 179
            +   G+  
Sbjct: 687 HTRWRGNPA 695



 Score = 38.6 bits (90), Expect = 0.002
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 225 VEIGANSAIDRGTIDDT---IIGENTKIDNQVQI-GHNVHIGCGCIIVSQVGIAGSTYIG 280
            +IG    I       T    IG  T +  +V + G+    G       ++   G   +G
Sbjct: 113 AKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERG-------RLHT-GPVTLG 164

Query: 281 DNVLIGGQCGIAGYLKIGDNVQIASKSGVLKD--IPAGQQYGGMPARPIG 328
            +  IG +  +     IGD  Q+   S +     IP G+++ G PA+  G
Sbjct: 165 RDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTG 214



 Score = 37.0 bits (86), Expect = 0.007
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 164 GVRIGRNCSIGAGSSIYSSL--IGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVII 221
           G +IG+   IG+   + + L  IG   I+   V +        R        +H G V +
Sbjct: 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLG-----YRAERGR---LHTGPVTL 163

Query: 222 QDKVEIGANSAIDRGT 237
                IG  S +D  T
Sbjct: 164 GRDAFIGTRSTLDIDT 179



 Score = 32.0 bits (73), Expect = 0.23
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 111 EASSFEGGISPQAFLGEDVKIEDGVVIAPM-----AVVYPGVEIGRKTYVGPGSVIGAGV 165
           E SS +  +     +GE+  I DG+++                IGR++++G       G 
Sbjct: 361 EISSAQHEVPDLTDIGEETFIADGLLMGNARLSGGWFRLGRTRIGRRSFLGNSGYYPPGA 420

Query: 166 RIGRNCSIGAGSSI 179
           + G N  +G  S  
Sbjct: 421 KTGDNVLLGVLSMT 434



 Score = 30.5 bits (69), Expect = 0.76
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 125 LGEDVKIEDGVVIAPMAV----VYPG-VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI 179
           +G    +   V++         ++ G V +GR  ++G  S +     IG    +G GS++
Sbjct: 134 IGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSAL 193


>gnl|CDD|183330 PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate
           N-succinyltransferase; Provisional.
          Length = 272

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 20/64 (31%)

Query: 243 IGENTKIDNQ------VQIGHNVHIGCGCIIVSQVGI--------AGSTYIGDNVLIGGQ 288
           + E T +D         QIG NVH+  G      VGI        A    I DN  IG +
Sbjct: 135 VDEGTMVDTWATVGSCAQIGKNVHLSGG------VGIGGVLEPLQANPVIIEDNCFIGAR 188

Query: 289 CGIA 292
             + 
Sbjct: 189 SEVV 192



 Score = 35.6 bits (83), Expect = 0.021
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 24/85 (28%)

Query: 225 VEIGANSAIDRGTIDDTI--------IGENTKIDNQVQIG--------------HNVHIG 262
           V IGA   +D GT+ DT         IG+N  +   V IG               N  IG
Sbjct: 129 VNIGAY--VDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIG 186

Query: 263 CGCIIVSQVGIAGSTYIGDNVLIGG 287
               +V  V +   + +G  V +G 
Sbjct: 187 ARSEVVEGVIVEEGSVLGMGVFLGQ 211



 Score = 34.4 bits (80), Expect = 0.042
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 45/132 (34%)

Query: 133 DGVVIAPMAVVYPG-VEIGRKTYVGPGSVI------GAGVRIGRNCSIGAGSSIYSSLIG 185
            G  IAP  V+ P  V IG   YV  G+++      G+  +IG+N  +  G         
Sbjct: 114 RGAYIAPNVVLMPSYVNIG--AYVDEGTMVDTWATVGSCAQIGKNVHLSGG--------- 162

Query: 186 NSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI------- 238
                   V IG        GV +    +    VII+D   IGA S +  G I       
Sbjct: 163 --------VGIG--------GVLEP---LQANPVIIEDNCFIGARSEVVEGVIVEEGSVL 203

Query: 239 -DDTIIGENTKI 249
                +G++TKI
Sbjct: 204 GMGVFLGQSTKI 215



 Score = 30.2 bits (69), Expect = 0.81
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRI 167
           V IED   I   + V  GV +   + +G G  +G   +I
Sbjct: 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKI 215



 Score = 27.8 bits (63), Expect = 4.0
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 8/39 (20%)

Query: 279 IGDNVLIGGQCGIAGYLK--------IGDNVQIASKSGV 309
           IG NV + G  GI G L+        I DN  I ++S V
Sbjct: 153 IGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEV 191


>gnl|CDD|179140 PRK00844, glgC, glucose-1-phosphate adenylyltransferase;
           Provisional.
          Length = 407

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 157 PGSVIGAGVRIGR--NCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIV 214
           P   +  G R+G   +  + AGS I  + + NSV L   V + +                
Sbjct: 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSV-LSPNVVVESG--------------A 344

Query: 215 HIGRVIIQDKVEIGANSAIDRGTID-DTIIGENTKI 249
            +   ++ D V IG  + + R  +D + ++     I
Sbjct: 345 EVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATI 380


>gnl|CDD|182987 PRK11132, cysE, serine acetyltransferase; Provisional.
          Length = 273

 Score = 36.6 bits (85), Expect = 0.010
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 29/126 (23%)

Query: 209 DIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIV 268
           DIH    IGR I+           +D  T    +IGE   I+N V I  +V +G      
Sbjct: 143 DIHPAAKIGRGIM-----------LDHAT--GIVIGETAVIENDVSILQSVTLGG----- 184

Query: 269 SQVGIAGSTY------IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGM 322
                 G T       I + V+IG    I G +++G   +I + S VL+ +P      G+
Sbjct: 185 -----TGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGV 239

Query: 323 PARPIG 328
           PAR +G
Sbjct: 240 PARIVG 245



 Score = 28.9 bits (65), Expect = 2.2
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 20/95 (21%)

Query: 114 SFEGGISPQAFLGEDVKIE--DGVVIAPMAVVYPGVEI--------------GRKTYVGP 157
           +F+  I P A +G  + ++   G+VI   AV+   V I               R   +  
Sbjct: 139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIRE 198

Query: 158 GSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHS 192
           G +IGAG +I  N  +G G+ I +     SV+L  
Sbjct: 199 GVMIGAGAKILGNIEVGRGAKIGA----GSVVLQP 229


>gnl|CDD|162696 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase.  This
           enzyme, glucose-1-phosphate adenylyltransferase, is also
           called ADP-glucose pyrophosphorylase. The plant form is
           an alpha2,beta2 heterodimer, allosterically regulated in
           plants. Both subunits are homologous and included in
           this model. In bacteria, both homomeric forms of GlgC
           and more active heterodimers of GlgC and GlgD have been
           described. This model describes the GlgC subunit only.
           This enzyme appears in variants of glycogen synthesis
           pathways that use ADP-glucose, rather than UDP-glucose
           as in animals.
          Length = 361

 Score = 36.5 bits (85), Expect = 0.012
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 14/78 (17%)

Query: 227 IGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIG 286
           +     I   T+  +++G   +I +   +          +I+  VGI     I  N +I 
Sbjct: 297 VSEGCIISGATVSHSVLGIRVRIGSGSTVED-------SVIMGDVGIGRGAVI-RNAIID 348

Query: 287 GQCGIAGYLKIGDNVQIA 304
                    +IG+ V I 
Sbjct: 349 KNV------RIGEGVVIG 360



 Score = 35.3 bits (82), Expect = 0.024
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 11/51 (21%)

Query: 159 SVIGAGVRIGRNCS-----------IGAGSSIYSSLIGNSVILHSGVRIGN 198
           SV+G  VRIG   +           IG G+ I +++I  +V +  GV IGN
Sbjct: 311 SVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIGN 361


>gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase
           hexapeptide repeat family.  This family of proteins
           contains copies of the Bacterial transferase hexapeptide
           repeat family (pfam00132) and is only found in operons
           encoding the phosphonate C-P lyase system (GenProp0232).
           Many C-P lyase operons, however, lack a homolog of this
           protein.
          Length = 204

 Score = 35.9 bits (83), Expect = 0.014
 Identities = 40/190 (21%), Positives = 62/190 (32%), Gaps = 52/190 (27%)

Query: 155 VGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIV 214
           + P   +     +     +G       + IG    L     +    + Y     DI    
Sbjct: 5   LSPEPTLHPTAEL-TESKLGR-----YTEIGERTRLRE---VALGDYSYVMRDCDI-IYT 54

Query: 215 HIGR-VIIQDKVEIGA-NSAIDRGTI---------------DDTIIGENTKIDNQVQIGH 257
            IG+   I   V I A N  ++R T+               DD       +   +V IGH
Sbjct: 55  TIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDDADFFAWRR-AKRVTIGH 113

Query: 258 NVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQ 317
           +V IG G +I+  V                         IG+   IA+ + V KD+    
Sbjct: 114 DVWIGHGAVILPGV------------------------TIGNGAVIAAGAVVTKDVAPYT 149

Query: 318 QYGGMPARPI 327
              G+PA+ I
Sbjct: 150 IVAGVPAKLI 159



 Score = 34.0 bits (78), Expect = 0.063
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
           V IG   ++G G+VI  GV IG    I AG+
Sbjct: 109 VTIGHDVWIGHGAVILPGVTIGNGAVIAAGA 139



 Score = 30.5 bits (69), Expect = 0.61
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 111 EASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
           +A  F    + +  +G DV I  G      AV+ PGV IG    +  G+V+
Sbjct: 97  DADFFAWRRAKRVTIGHDVWIGHG------AVILPGVTIGNGAVIAAGAVV 141


>gnl|CDD|137467 PRK09677, PRK09677, putative lipopolysaccharide biosynthesis
           O-acetyl transferase WbbJ; Provisional.
          Length = 192

 Score = 35.6 bits (82), Expect = 0.022
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189
           V IG++ ++G    I  GV IG  C +GA S +  S+  N+VI
Sbjct: 131 VVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVI 173



 Score = 35.2 bits (81), Expect = 0.023
 Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 219 VIIQDKVEIGANSAIDRGTIDDTIIGENTKID--NQVQIGHNVHIGCGCIIVSQVGIAGS 276
           V + D V I    +I  G   DT+I     I   N     H+       +      +  S
Sbjct: 72  VQVNDYVHIACIESITIG--RDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESS 129

Query: 277 TY-IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEY 330
              IG  V IG    I   + IG+   + + S V K IP      G PA+ I +Y
Sbjct: 130 AVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKKY 184


>gnl|CDD|177933 PLN02296, PLN02296, carbonate dehydratase.
          Length = 269

 Score = 32.4 bits (74), Expect = 0.19
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 45/143 (31%)

Query: 220 IIQDKVEIGANSAI-----DRGTIDDTIIGENTKI-DNQVQIGHNVHIGCGCIIVSQVGI 273
           +I D V++G  S+I      RG ++   +G  T I DN +     VH       V++  +
Sbjct: 67  VIGD-VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSL-----VH-------VAKTNL 113

Query: 274 AGS---TYIGDNVLIGGQ-----C--------GIAGYLKIGDNVQ----IASKSGVLKD- 312
           +G    T IGDNV IG       C        G+   L  G  V+    +A+ + V ++ 
Sbjct: 114 SGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNT 173

Query: 313 -IPAGQQYGGMPARPIGEYLRHM 334
            IP+G+ + G PA+    +LR +
Sbjct: 174 RIPSGEVWAGNPAK----FLRKL 192


>gnl|CDD|116569 pfam07959, Fucokinase, L-fucokinase.  In the salvage pathway of
           GDP-L-fucose, free cytosolic fucose is phosphorylated by
           L-fucokinase to form L-fucose-L-phosphate, which is then
           further converted to GDP-L-fucose in the reaction
           catalysed by GDP-L-fucose pyrophosphorylase.
          Length = 414

 Score = 32.1 bits (73), Expect = 0.21
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 147 VEIGRKTYVGPGSVI-----GAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGV 194
             +     VGPGSV+     G  VRIG NC I +G  I  S    ++ L   V
Sbjct: 285 SLLDSGVSVGPGSVVEYSHLGGPVRIGSNC-IVSGVDILHSEALPALELPDFV 336


>gnl|CDD|182295 PRK10191, PRK10191, putative acyl transferase; Provisional.
          Length = 146

 Score = 31.8 bits (72), Expect = 0.26
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 279 IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPAR 325
           IG+ V +G    I G + IG+NV + + S VL  +P      G  AR
Sbjct: 95  IGNGVELGANVIILGDITIGNNVTVGAGSVVLDSVPDNALVVGEKAR 141



 Score = 31.8 bits (72), Expect = 0.31
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVE-IGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
           I+     G+D  I  GV I            IG    +G   +I   + IG N ++GAGS
Sbjct: 64  INKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGS 123

Query: 178 SIYSSLIGNSVILHSGVRI 196
            +  S+  N++++    R+
Sbjct: 124 VVLDSVPDNALVVGEKARV 142


>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase;
           Provisional.
          Length = 429

 Score = 31.8 bits (73), Expect = 0.27
 Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 33/106 (31%)

Query: 173 IGAGSSIYSSLIGNSVILHSGVR--IGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGAN 230
           I  G  I +  I +SV+   G+R  I +                      I+D + +GA+
Sbjct: 311 IAEGCIIKNCSIHHSVL---GIRSRIESG-------------------CTIEDTLVMGAD 348

Query: 231 -----SAIDRGTIDDTI---IGENTKIDNQVQIGHNVHIGCGCIIV 268
                   +    +      IGE T I   + I  N  IG    IV
Sbjct: 349 FYESSEEREELRKEGKPPLGIGEGTTIKRAI-IDKNARIGNNVRIV 393



 Score = 27.2 bits (61), Expect = 6.4
 Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 25/94 (26%)

Query: 159 SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGR 218
           SV+G   RI   C+I       + ++G      S  R      G             +G 
Sbjct: 325 SVLGIRSRIESGCTI-----EDTLVMGADFYESSEEREELRKEG----------KPPLG- 368

Query: 219 VIIQDKVEIGANSAIDRGTID-DTIIGENTKIDN 251
                   IG  + I R  ID +  IG N +I N
Sbjct: 369 --------IGEGTTIKRAIIDKNARIGNNVRIVN 394



 Score = 27.2 bits (61), Expect = 6.5
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 145 PGVEIGRKTYVGPGSVIGAGVRIGRNCSI 173
           P + IG  T +   ++I    RIG N  I
Sbjct: 365 PPLGIGEGTTI-KRAIIDKNARIGNNVRI 392


>gnl|CDD|132575 TIGR03536, DapD_gpp, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
           N-succinyltransferase.
           2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
           N-succinyltransferase (DapD) is involved in the
           succinylated branch of the "lysine biosynthesis via
           diaminopimelate (DAP)" pathway (GenProp0125). This model
           represents a clade of DapD sequences most closely
           related to the actinobacterial DapD family represented
           by the TIGR03535 model. All of the genes evaluated for
           the seed of this model are found in genomes where the
           downstream desuccinylase is present, but known DapD
           genes are absent. Additionally, many of the genes
           identified by this model are found proximal to genes
           involved in this lysine biosynthesis pathway.
          Length = 341

 Score = 31.7 bits (72), Expect = 0.30
 Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 20/93 (21%)

Query: 134 GVVIAPMAVVYPGVEIGRKTYV-------------GPGSV---IGAGVRIGRNCSIGAGS 177
           GV IA  A V  G  +G  T V             GP  V   I AGV +G+   +G G 
Sbjct: 178 GVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGC 237

Query: 178 SIYSSLIGNSVILHS---GVRIG-NDGFGYARG 206
           S   +L G   I+ S   G  +G N G G   G
Sbjct: 238 STMGTLSGGGNIVISVGEGCLLGANAGIGIPLG 270


>gnl|CDD|130038 TIGR00965, dapD, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
           N-succinyltransferase.  The closely related TabB protein
           of Pseudomonas syringae (pv. tabaci) appears to act in
           the biosynthesis of tabtoxin rather than lysine. The
           trusted cutoff is set high enough to exclude this gene.
           Sequences below trusted also include a version of this
           enzyme which apparently utilize acetate rather than
           succinate (EC: 2.3.1.89).
          Length = 269

 Score = 31.4 bits (71), Expect = 0.36
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 20/82 (24%)

Query: 219 VIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG--- 275
           V++   V IGA   +D GT+ DT       + +  QIG NVH+  G      VGI G   
Sbjct: 120 VLMPSYVNIGA--YVDEGTMVDTW----ATVGSCAQIGKNVHLSGG------VGIGGVLE 167

Query: 276 -----STYIGDNVLIGGQCGIA 292
                 T I DN  IG +  I 
Sbjct: 168 PLQANPTIIEDNCFIGARSEIV 189



 Score = 31.0 bits (70), Expect = 0.50
 Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 21/132 (15%)

Query: 127 EDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIG 185
           E    + G  + P A V  G  I +   + P S +  G  +     +   +++ S + IG
Sbjct: 93  EARFKKAGFRVVPGAAVRQGAFIAKNVVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIG 151

Query: 186 NSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD----- 240
            +V L  GV IG            + + +     II+D   IGA S I  G I +     
Sbjct: 152 KNVHLSGGVGIGG-----------VLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVI 200

Query: 241 ---TIIGENTKI 249
                IG++TKI
Sbjct: 201 SMGVFIGQSTKI 212


>gnl|CDD|179502 PRK02925, PRK02925, glucuronate isomerase; Reviewed.
          Length = 466

 Score = 30.9 bits (71), Expect = 0.47
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 136 VIAPMAVVYPGVEIGRKTYVGPG 158
            +A MA  + G+ I  K   G G
Sbjct: 356 ELATMAGNFQGLGIPGKMQFGAG 378


>gnl|CDD|177884 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase.
          Length = 436

 Score = 30.2 bits (69), Expect = 0.80
 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 27/103 (26%)

Query: 231 SAIDRGTIDDTIIGE-----NTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTY------- 278
           S I+   I D+II         KI++ V +G    IG G  I   V + G+ Y       
Sbjct: 306 SKIEDCRITDSIISHGCFLRECKIEHSV-VGLRSRIGEGVEIEDTV-MMGADYYETEEEI 363

Query: 279 ------------IGDNVLIGGQCGIAGYLKIGDNVQIASKSGV 309
                       IG+N  I     I    +IG NV I +K GV
Sbjct: 364 ASLLAEGKVPIGIGENTKIRN-AIIDKNARIGKNVVIINKDGV 405


>gnl|CDD|162697 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD
           subunit.  This family is GlgD, an apparent regulatory
           protein that appears in an alpha2/beta2 heterotetramer
           with GlgC (glucose-1-phosphate adenylyltransferase,
           TIGR02091) in a subset of bacteria that use GlgC for
           glycogen biosynthesis.
          Length = 369

 Score = 29.7 bits (67), Expect = 1.1
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 176 GSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDR 235
            S + +SL+ N  I+   V   N      RGV  + K   I   II  +  IG  + ++ 
Sbjct: 284 NSKVENSLVANGCIIEGKVE--NSILS--RGVH-VGKDALIKNCIIMQRTVIGEGAHLEN 338

Query: 236 GTID-DTIIGENTKI 249
             ID D +I  N KI
Sbjct: 339 VIIDKDVVIEPNVKI 353


>gnl|CDD|162250 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase,
           long form.  Alternate name: dTDP-D-glucose synthase.
          Length = 353

 Score = 29.7 bits (67), Expect = 1.3
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 14/83 (16%)

Query: 116 EGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGA 175
           E  I  +  +GE  KI + V+  P AV+     I   +Y+GP +            SIG 
Sbjct: 248 ESKIRGRVVVGEGAKIVNSVIRGP-AVIGEDCIIEN-SYIGPYT------------SIGE 293

Query: 176 GSSIYSSLIGNSVILHSGVRIGN 198
           G  I  + + +S++L   V  G 
Sbjct: 294 GVVIRDAEVEHSIVLDESVIEGV 316


>gnl|CDD|185150 PRK15235, PRK15235, outer membrane fimbrial usher protein SefC;
           Provisional.
          Length = 814

 Score = 28.9 bits (64), Expect = 1.9
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 152 KTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIH 211
           KT VG  ++I    RI R            SL  N  ++ S   +G DG  Y  G+S + 
Sbjct: 723 KTSVGTNALI----RITRTNGKPLALGTVLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQ 778

Query: 212 KIV 214
           K++
Sbjct: 779 KLI 781


>gnl|CDD|178091 PLN02472, PLN02472, uncharacterized protein.
          Length = 246

 Score = 28.8 bits (64), Expect = 2.3
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 36/136 (26%)

Query: 213 IVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCII----V 268
           +V  G+V + D   +  N A+ RG +            N++ +G   ++   C++     
Sbjct: 72  VVLAGQVTVWDGASVW-NGAVLRGDL------------NKITVGFCSNVQERCVLHAAWN 118

Query: 269 SQVGIAGSTYIGDNVLIGGQC-------------GIAGYLKIGDNVQIAS--KSGVL--- 310
           S  G+   T I   V IG                G    L  G  V+  S  ++G +   
Sbjct: 119 SPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPP 178

Query: 311 -KDIPAGQQYGGMPAR 325
            + IP G+ + G PAR
Sbjct: 179 GRRIPTGELWAGNPAR 194


>gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY.
           Members of this family are located next to other genes
           organized into apparent operons for phenylacetic acid
           degradation. PaaY is located near the end of these gene
           clusters and often next to PaaX, a transcriptional
           regulator.
          Length = 192

 Score = 27.2 bits (60), Expect = 7.3
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 124 FLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
           F G+D  +E+   +   A+++ G  +GR   VG  +V+  G  IG N  + A +
Sbjct: 65  FPGQDTVVEENGHVGHGAILH-GCIVGRNALVGMNAVVMDGAVIGENSIVAASA 117


>gnl|CDD|179099 PRK00725, glgC, glucose-1-phosphate adenylyltransferase;
           Provisional.
          Length = 425

 Score = 27.1 bits (61), Expect = 7.5
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 34/99 (34%)

Query: 159 SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGR 218
           S++  G        I +G+ +  S++ + V ++S   + +                    
Sbjct: 328 SLVSGGC-------IISGAVVRRSVLFSRVRVNSFSNVED-------------------- 360

Query: 219 VIIQDKVEIGANS-----AIDRGTI--DDTIIGENTKID 250
            ++   V +G +       IDRG +  +  +IGE+ + D
Sbjct: 361 SVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGEDPEED 399


>gnl|CDD|163036 TIGR02827, RNR_anaer_Bdell, anaerobic ribonucleoside-triphosphate
           reductase.  Members of this family belong to the class
           III anaerobic ribonucleoside-triphosphate reductases
           (RNR). These glycine-radical-containing enzymes are
           oxygen-sensitive and operate under anaerobic conditions.
           The genes for this family are pair with genes for an
           acitivating protein that creates a glycine radical.
           Members of this family, though related, fall outside the
           scope of TIGR02487, a functionally equivalent protein
           set; no genome has members in both familes.
           Identification as RNR is supported by gene pairing with
           the activating protein, lack of other anaerobic RNR, and
           presence of an upstream regulatory element strongly
           conserved upstream of most RNR operons.
          Length = 586

 Score = 26.7 bits (59), Expect = 8.8
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 172 SIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANS 231
           S+GAG     S+   +VI  +  R+  D    A  V  IHK     R ++++ +  G   
Sbjct: 313 SLGAGGVATGSI---NVITINMNRLVQDSRDLAHEVEKIHKYQVAYRELMKEYLAAGLLP 369

Query: 232 AIDRGTI 238
             D G I
Sbjct: 370 LYDAGFI 376


>gnl|CDD|181016 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
          Length = 588

 Score = 26.9 bits (60), Expect = 9.1
 Identities = 15/63 (23%), Positives = 20/63 (31%)

Query: 14  ALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICS 73
           AL+   +S     L     E           A      Y+  R+ L  I+K      I S
Sbjct: 347 ALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALREIQKALPEDAIVS 406

Query: 74  QDI 76
            DI
Sbjct: 407 TDI 409


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.140    0.407 

Gapped
Lambda     K      H
   0.267   0.0844    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,693,179
Number of extensions: 378681
Number of successful extensions: 1251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 120
Length of query: 347
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 253
Effective length of database: 3,963,321
Effective search space: 1002720213
Effective search space used: 1002720213
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)