RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] (347 letters) >gnl|CDD|179158 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional. Length = 343 Score = 401 bits (1032), Expect = e-112 Identities = 148/331 (44%), Positives = 197/331 (59%), Gaps = 8/331 (2%) Query: 11 KGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAI 70 + L +LA+ +GA L+ + G+ I ++ + A G IS++ + K+ + KA A+ Sbjct: 1 MSLTLAELAELLGAELVGD--GDIEITGVASLEEAGPGQISFLANPKYRKQLATTKAGAV 58 Query: 71 ICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVK 130 I S D F+P L+ P ++FA + P A S GI P A + K Sbjct: 59 IVSPDDAEFVPAGNALLVVKNPYLAFARLAQLFDPPATP----SPAAGIHPSAVIDPSAK 114 Query: 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSL-IGNSVI 189 I +GV I P AV+ GV IG +G G+VIG GV+IG +C + A +IY ++ IGN VI Sbjct: 115 IGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVI 174 Query: 190 LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249 +HSG IG+DGFG+A KI +GRVII D VEIGAN+ IDRG +DDT+IGE KI Sbjct: 175 IHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKI 234 Query: 250 DNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGV 309 DN VQI HNV IG I +QVGIAGST IG +IGGQ GIAG+L+IGD V I + SGV Sbjct: 235 DNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 Query: 310 LKDIPA-GQQYGGMPARPIGEYLRHMVMLSK 339 K IP G+ G+PA+P E+LR L + Sbjct: 295 TKSIPEPGEYSSGIPAQPNKEWLRTAARLRR 325 >gnl|CDD|162561 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). Length = 324 Score = 331 bits (850), Expect = 2e-91 Identities = 153/324 (47%), Positives = 196/324 (60%), Gaps = 11/324 (3%) Query: 18 LAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIV 77 LA+ +GA L G+ +I ++P+ +A I+++ + K+L +++ +A A+I S D Sbjct: 2 LAERLGAELKGN--GDIVITGVAPLEKAKANHITFLANPKYLKHLKSSQAGAVIVSPDDQ 59 Query: 78 PFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVI 137 +P L+ P ++FA + P E GI P A + KI DGV I Sbjct: 60 -GLPAKCAALVVKDPYLAFAKVAELFDPPPKR------EAGIHPTAVVDPSAKIGDGVTI 112 Query: 138 APMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVRI 196 P V+ GVEIG +GPG VIG V IG I IY +G +VI+HSG I Sbjct: 113 GPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172 Query: 197 GNDGFGYARGVSDIH-KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQI 255 G+DGFGYA + H KI IGRVII+D VEIGAN+ IDRG DDTIIGE TKIDN VQI Sbjct: 173 GSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQI 232 Query: 256 GHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPA 315 HN IG CIIV+QVGIAGST IG NV+IGGQ G+AG+L+IGDNV I +KSGV K IP Sbjct: 233 AHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSIPP 292 Query: 316 GQQYGGMPARPIGEYLRHMVMLSK 339 YGG+PARP E+LR + + Sbjct: 293 PGVYGGIPARPNKEWLRIAAKVKR 316 >gnl|CDD|179994 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional. Length = 262 Score = 101 bits (254), Expect = 3e-22 Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 37/218 (16%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178 I P A + KI + V I P V+ P V IG T +G VI IG+N I +S Sbjct: 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFAS 64 Query: 179 IYSSLIGNSVILHSGVRIGND--GFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRG 236 IG D Y + R++I D I I+RG Sbjct: 65 -----------------IGEDPQDLKYKGEPT---------RLVIGDNNTIREFVTINRG 98 Query: 237 TIDD---TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAG 293 T+ T IG+N + V + H+ +G I+ + +AG +GD +IGG + Sbjct: 99 TVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQ 158 Query: 294 YLKIGDNVQIASKSGVLKDIPAGQQYG---GMPARPIG 328 +++IG + + SGV +D+P Y G PAR G Sbjct: 159 FVRIGAHAMVGGMSGVSQDVPP---YVLAEGNPARLRG 193 >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 458 Score = 99.1 bits (248), Expect = 1e-21 Identities = 66/192 (34%), Positives = 92/192 (47%), Gaps = 26/192 (13%) Query: 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL 190 I+ V I V+ PGV I T +G VIG G RI + +IG G +I +S+I S + Sbjct: 262 IDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRI-VDSTIGDGVTITNSVIEESKV- 319 Query: 191 HSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKID 250 V +G F + R S I + V IG + VE I + IGE TK+ Sbjct: 320 GDNVTVGP--FAHLRPGSVIGEEVKIG-----NFVE-----------IKKSTIGEGTKVS 361 Query: 251 N-----QVQIGHNVHIGCGCIIVSQVGIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIA 304 + ++G NV+IGCG I V+ G T IGDN IG + + +GDN IA Sbjct: 362 HLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIA 421 Query: 305 SKSGVLKDIPAG 316 + S + KD+P Sbjct: 422 AGSTITKDVPED 433 Score = 32.1 bits (74), Expect = 0.20 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 241 TIIG-ENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGD 299 TII E+T ID V+IG + I G + I G+T IG++ +IG I IGD Sbjct: 253 TIIDPESTYIDADVEIGSDTVIEPGVV------IKGNTVIGEDCVIGPGSRIVDS-TIGD 305 Query: 300 NVQIAS 305 V I + Sbjct: 306 GVTITN 311 Score = 31.7 bits (73), Expect = 0.27 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177 + P + +GE+VKI + V I IG T V + IG +G N +IG G+ Sbjct: 331 LRPGSVIGEEVKIGNFVEIK-------KSTIGEGTKVSHLTYIGDAE-VGENVNIGCGT 381 >gnl|CDD|130911 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). Length = 254 Score = 97.7 bits (244), Expect = 4e-21 Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 11/196 (5%) Query: 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI-YSSLIGNSVILHSGVR 195 I P A++ PG EIG +GP ++G GV+IG + + I + IG + G Sbjct: 1 IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAV 60 Query: 196 IGND--GFGYARGVSDIHKIVHIG-RVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQ 252 IG Y ++ + IG I++ V I +A G T IG N + Sbjct: 61 IGGVPQDLKYKGERTE----LIIGDNNTIREFVTINRGTASGGGV---TRIGNNNLLMAY 113 Query: 253 VQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKD 312 I H+ +G I+ + +AG +GD +IGG + +++IG I S V KD Sbjct: 114 SHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD 173 Query: 313 IPAGQQYGGMPARPIG 328 +P G AR G Sbjct: 174 VPPYGLVEGNRARLRG 189 >gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional. Length = 255 Score = 97.0 bits (242), Expect = 7e-21 Identities = 61/213 (28%), Positives = 88/213 (41%), Gaps = 26/213 (12%) Query: 118 GISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177 I P A + K+ GV I P AV+ VEIG T++GP +VI RIG+N I Sbjct: 1 MIHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKI---- 56 Query: 178 SIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGT 237 H G +G++ D R+ I D+ I I RGT Sbjct: 57 -------------HQGAVVGDEP-------QDFTYKGEESRLEIGDRNVIREGVTIHRGT 96 Query: 238 IDD--TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYL 295 T IG + + + H+ IG I+V+ +AG +GD +I G C + + Sbjct: 97 KGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFC 156 Query: 296 KIGDNVQIASKSGVLKDIPAGQQYGGMPARPIG 328 +IG +A S + KD+P G P G Sbjct: 157 RIGALAMMAGGSRISKDVPPYCMMAGHPTNVHG 189 >gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. Length = 451 Score = 91.2 bits (227), Expect = 4e-19 Identities = 63/199 (31%), Positives = 89/199 (44%), Gaps = 29/199 (14%) Query: 124 FLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI--YS 181 + V+I V I P ++ V+IG +GPG VI +N IG+ I YS Sbjct: 257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVI-------KNSVIGSNVVIKAYS 309 Query: 182 SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD- 240 L G+ + G +G F R S + VHIG VE N+ I +G+ Sbjct: 310 VLEGSEIG--EGCDVGP--FARLRPGSVLGAGVHIGNF-----VET-KNARIGKGSKAGH 359 Query: 241 -TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKIG 298 + +G+ +IG NV+IG G I + G T IGD V IG + +K+G Sbjct: 360 LSYLGD-------AEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVG 412 Query: 299 DNVQIASKSGVLKDIPAGQ 317 D IA+ S V KD+P G Sbjct: 413 DGATIAAGSTVTKDVPEGA 431 Score = 43.8 bits (104), Expect = 7e-05 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 18/87 (20%) Query: 217 GRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS 276 R I+ VEIG D I N ++ +V+IG +V IG GC+I + V Sbjct: 254 ARFDIRGTVEIGR----------DVEIDPNVILEGKVKIGDDVVIGPGCVIKNSV----- 298 Query: 277 TYIGDNVLIGGQCGIAGYLKIGDNVQI 303 IG NV+I + G +IG+ + Sbjct: 299 --IGSNVVIKAYSVLEGS-EIGEGCDV 322 Score = 34.6 bits (80), Expect = 0.041 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 7/63 (11%) Query: 245 ENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIA 304 I V+IG +V I I + G IGD+V+IG C I IG NV I Sbjct: 254 ARFDIRGTVEIGRDVEIDPNVI------LEGKVKIGDDVVIGPGCVIKN-SVIGSNVVIK 306 Query: 305 SKS 307 + S Sbjct: 307 AYS 309 >gnl|CDD|172831 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 459 Score = 81.3 bits (201), Expect = 4e-16 Identities = 58/196 (29%), Positives = 85/196 (43%), Gaps = 23/196 (11%) Query: 133 DGVVIAPMAVVY--PGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL 190 GV + Y GV IGR T + PG I RIG C+I G I IG+ V + Sbjct: 253 AGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTV 312 Query: 191 HSG-----VRIGNDG----FGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDT 241 +G +G+D + R +++ V IG + K+ +G S T Sbjct: 313 KAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASH----LT 368 Query: 242 IIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG-STYIGDNVLIGGQCGIAGYLKIGDN 300 +G+ T IG NV+IGCG I + G+ T I D+V +G + +G N Sbjct: 369 YLGDAT-------IGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRN 421 Query: 301 VQIASKSGVLKDIPAG 316 IA+ + V KD+P Sbjct: 422 SLIAAGTTVTKDVPPD 437 Score = 32.0 bits (73), Expect = 0.21 Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 39/130 (30%) Query: 127 EDVKIEDGVVIAPMAVVYPG------VEIG-----RKTYVGPGS------VIGAGVRIGR 169 ED + D V I PMA + PG V+IG +K +G GS +G IGR Sbjct: 319 EDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLG-DATIGR 377 Query: 170 NCSIGAGSSI--YSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEI 227 N +IG G+ Y + + ++ V +G+D V V + Sbjct: 378 NVNIGCGTITCNYDGVKKHRTVIEDDVFVGSD-------------------VQFVAPVTV 418 Query: 228 GANSAIDRGT 237 G NS I GT Sbjct: 419 GRNSLIAAGT 428 >gnl|CDD|184644 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 448 Score = 72.9 bits (179), Expect = 1e-13 Identities = 58/207 (28%), Positives = 85/207 (41%), Gaps = 44/207 (21%) Query: 131 IEDGVVIAPMAVVY--PGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSV 188 +E+GV I Y VEIG T + P + I RIG +C IG + I IGN+V Sbjct: 238 MENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNV 297 Query: 189 -ILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGT---------- 237 I+ S + +I+D V +G S + GT Sbjct: 298 KIIRSECE----------------------KSVIEDDVSVGPFSRLREGTVLKKSVKIGN 335 Query: 238 ---IDDTIIGENTKIDN-----QVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQ 288 I + IGENTK + +G NV+IG G I + G + T+I D IG Sbjct: 336 FVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSN 395 Query: 289 CGIAGYLKIGDNVQIASKSGVLKDIPA 315 + ++IG I + S + +D+P Sbjct: 396 SSLVAPVRIGKGALIGAGSVITEDVPP 422 Score = 33.2 bits (76), Expect = 0.093 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 123 AFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIG------AGVRIGRNCSIGAG 176 A +G++V I G + Y G + T++ G+ IG A VRIG+ IGAG Sbjct: 359 ATVGKNVNIGAGTITCN----YDGKK-KNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAG 413 Query: 177 SSIYSSLIGNSVIL 190 S I + S+ L Sbjct: 414 SVITEDVPPYSLAL 427 >gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 450 Score = 64.6 bits (158), Expect = 3e-11 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 18/188 (9%) Query: 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL 190 I + V + P ++ P + T +G G IG G I N IG ++ S++ +S I Sbjct: 259 ISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLI-ENSQIGENVTVLYSVVSDSQIG 317 Query: 191 HSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDR-GTIDDTIIGENTKI 249 GV+IG + + R + I IG + K ++G S ++ I D +GE Sbjct: 318 -DGVKIGP--YAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGE---- 370 Query: 250 DNQVQIGHNVHIGCGCIIVSQVGIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSG 308 V+IG G I + G+ T IGD G + + +G++V +A+ S Sbjct: 371 --------QVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGST 422 Query: 309 VLKDIPAG 316 + KD+P Sbjct: 423 ITKDVPDN 430 Score = 35.3 bits (82), Expect = 0.023 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 9/62 (14%) Query: 123 AFLGEDVKIEDGVVIAPMAVVYPGV-----EIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177 A LGE V I G + A Y GV IG ++ G SV+ A + +G + ++ AGS Sbjct: 366 ATLGEQVNIGAGTITAN----YDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGS 421 Query: 178 SI 179 +I Sbjct: 422 TI 423 Score = 34.5 bits (80), Expect = 0.040 Identities = 39/167 (23%), Positives = 56/167 (33%), Gaps = 75/167 (44%) Query: 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIG-----RNCSIGAGSSIYSS 182 D +I DGV I P A ++ P + IG+ RIG + +G GS Sbjct: 313 DSQIGDGVKIGPYA------------HLRPEAQIGSNCRIGNFVEIKKSQLGEGS----- 355 Query: 183 LIGNSVILHSGVRIGNDGFGYARGVSDIHKIVH---IGRVIIQDKVEIGANSAIDRGTI- 238 K+ H IG + ++V IGA GTI Sbjct: 356 -----------------------------KVNHLSYIGDATLGEQVNIGA------GTIT 380 Query: 239 --------DDTIIGENTKID-NQV-----QIGHNVHIGCGCIIVSQV 271 T+IG+ +K N V +G +V + G I V Sbjct: 381 ANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDV 427 >gnl|CDD|163332 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 201 Score = 63.7 bits (156), Expect = 6e-11 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 218 RVIIQDKVEIGANSAIDRGTI--DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275 I+ IG + I G + D IG+N I+ + H+ IG I V ++G Sbjct: 93 SAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSG 152 Query: 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPA 324 IG+ V IG I + IG + + + V KDIP G G+PA Sbjct: 153 GVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGVVVGVPA 201 Score = 60.6 bits (148), Expect = 5e-10 Identities = 33/115 (28%), Positives = 43/115 (37%), Gaps = 24/115 (20%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178 I P A + I +G VI AV+ P V IG + G+++ IG I G Sbjct: 90 IHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPG-- 147 Query: 179 IYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAI 233 V L GV IG F + G IIQ V IGA + + Sbjct: 148 ---------VTLSGGVVIGEGVF------------IGAGATIIQ-GVTIGAGAIV 180 Score = 56.7 bits (138), Expect = 8e-09 Identities = 24/70 (34%), Positives = 34/70 (48%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178 I+ A + D I D V IAP + GV IG ++G G+ I GV IG +GAG+ Sbjct: 126 INTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAV 185 Query: 179 IYSSLIGNSV 188 + + V Sbjct: 186 VTKDIPDGGV 195 Score = 56.0 bits (136), Expect = 1e-08 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 24/117 (20%) Query: 134 GVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI-YSSLIGNSVILHS 192 +I P A+V P IG T + G+VI VRIG N I G+ + + +IG+ V + Sbjct: 87 ATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAP 146 Query: 193 GVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249 GV + G V+I + V IGA + I I IG + Sbjct: 147 GVTLS-------------------GGVVIGEGVFIGAGATI----IQGVTIGAGAIV 180 >gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. Length = 231 Score = 62.1 bits (151), Expect = 2e-10 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 220 IIQDKVEIGANSAIDRGTIDD--TIIGENTKID------NQVQIGHNVHIGCGCII--VS 269 II+D+V IG N+ I G + + IGE T ID + +G NVHIG G ++ V Sbjct: 94 IIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVI 153 Query: 270 QVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329 + A I DNVLIG I +++G +A+ + V +D+P G+PA+ I + Sbjct: 154 EPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVIKQ 213 Score = 51.3 bits (123), Expect = 3e-07 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 17/95 (17%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178 I P A + + V I D VI AV+ G EIG T + +V+G +G+N IGAG+ Sbjct: 89 IEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAV 148 Query: 179 IY---------------SSLIG-NSVILHSGVRIG 197 + + LIG N+VIL GVR+G Sbjct: 149 LAGVIEPPSAKPVVIEDNVLIGANAVILE-GVRVG 182 Score = 29.0 bits (65), Expect = 2.0 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 122 QAFLGEDVKIEDGVVIAPMAVVYPG----VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177 +A +G++V I G V+A V+ P V I +G +VI GVR+G+ + AG+ Sbjct: 134 RATVGKNVHIGAGAVLA--GVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGA 191 Query: 178 SIYSSLIGNSVI 189 + + N+V+ Sbjct: 192 IVTEDVPPNTVV 203 >gnl|CDD|177989 PLN02357, PLN02357, serine acetyltransferase. Length = 360 Score = 60.7 bits (147), Expect = 5e-10 Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 26/138 (18%) Query: 211 HKIVH--------IGRVIIQDK------VEIGANSAIDRGTIDD----TIIGENTKIDNQ 252 H+I H I ++IQ++ V+I + I +G + D +IGE + N Sbjct: 199 HRIAHKLWTQGRKILALLIQNRVSEAFAVDIHPGAKIGQGILLDHATGVVIGETAVVGNN 258 Query: 253 VQIGHNVHIGCGCIIVSQVGIAGSTY--IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL 310 V I HNV +G +G + IGD VLIG I G + IG+ +I + S VL Sbjct: 259 VSILHNVTLG------GTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVL 312 Query: 311 KDIPAGQQYGGMPARPIG 328 KD+P G PAR IG Sbjct: 313 KDVPPRTTAVGNPARLIG 330 Score = 31.0 bits (70), Expect = 0.44 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 22/90 (24%) Query: 112 ASSFEGGISPQAFLGEDVKIE--DGVVIAPMAVVYPGVEI--------------GRKTYV 155 + +F I P A +G+ + ++ GVVI AVV V I R + Sbjct: 222 SEAFAVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKI 281 Query: 156 GPGSVIGAG------VRIGRNCSIGAGSSI 179 G G +IGAG + IG IGAGS + Sbjct: 282 GDGVLIGAGTCILGNITIGEGAKIGAGSVV 311 >gnl|CDD|182500 PRK10502, PRK10502, putative acyl transferase; Provisional. Length = 182 Score = 57.7 bits (140), Expect = 4e-09 Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 31/122 (25%) Query: 224 KVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ-----VG------ 272 K+ IG D IG++ + N +I IG C+I SQ G Sbjct: 71 KLTIG----------DYAWIGDDVWLYNLGEI----TIGAHCVI-SQKSYLCTGSHDYSD 115 Query: 273 -----IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327 IG+ + +A + IG + ++S V K +PA G PA PI Sbjct: 116 PHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVPI 175 Query: 328 GE 329 Sbjct: 176 RP 177 Score = 38.8 bits (91), Expect = 0.002 Identities = 13/40 (32%), Positives = 21/40 (52%) Query: 149 IGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSV 188 IG ++ + GV IG +GA SS++ SL N++ Sbjct: 127 IGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTI 166 >gnl|CDD|172832 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 456 Score = 55.5 bits (134), Expect = 2e-08 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 17/193 (8%) Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIG 185 E V+I I P A +Y EI + + G+VI + + R+ + +G++I+S Sbjct: 261 PESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWL-RDAVVSSGATIHSFSHL 319 Query: 186 NSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGT-IDDTIIG 244 + G +G + R + + + +G + K +G + + T + D IG Sbjct: 320 EGAEVGDGCSVGP--YARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIG 377 Query: 245 ENTKIDNQVQIGHNVHIGCGCIIVSQVGI-AGSTYIGDNVLIGGQCGIAGYLKIGDNVQI 303 +IG G I + G+ T IG+ IG + + IGD + Sbjct: 378 AGA------------NIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALV 425 Query: 304 ASKSGVLKDIPAG 316 + S + KD+P G Sbjct: 426 GAGSVITKDVPDG 438 >gnl|CDD|182235 PRK10092, PRK10092, maltose O-acetyltransferase; Provisional. Length = 183 Score = 54.0 bits (130), Expect = 5e-08 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 18/87 (20%) Query: 259 VHIGCGCIIVSQVGIAGSTY------------------IGDNVLIGGQCGIAGYLKIGDN 300 + IG C++ V I +T+ IG+NV IGG+ I + IGDN Sbjct: 94 IRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDN 153 Query: 301 VQIASKSGVLKDIPAGQQYGGMPARPI 327 V +AS + V KD+P GG PAR I Sbjct: 154 VVVASGAVVTKDVPDNVVVGGNPARII 180 Score = 32.5 bits (74), Expect = 0.19 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 125 LGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIG 174 LG+ V I + V I AV+ PGV IG V G+V+ V N +G Sbjct: 126 LGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVP--DNVVVG 173 Score = 30.2 bits (68), Expect = 0.85 Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 V IG ++G +VI GV IG N + +G+ + + N V+ + RI Sbjct: 130 VTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARI 179 Score = 27.9 bits (62), Expect = 4.3 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 12/88 (13%) Query: 165 VRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDK 224 +RIG NC + G IY++ + L R N G + V+ + + GR +I Sbjct: 94 IRIGDNCMLAPGVHIYTA----THPLDPVAR--NSGAELGKPVTIGNNVWIGGRAVINPG 147 Query: 225 VEIGANSAIDRGTI------DDTIIGEN 246 V IG N + G + D+ ++G N Sbjct: 148 VTIGDNVVVASGAVVTKDVPDNVVVGGN 175 >gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase. Length = 294 Score = 53.5 bits (128), Expect = 8e-08 Identities = 42/120 (35%), Positives = 54/120 (45%), Gaps = 12/120 (10%) Query: 212 KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQV 271 +I + V I +IG D T +IGE I N V I H+V +G Sbjct: 154 RISDVFAVDIHPAAKIGKGILFDHAT--GVVIGETAVIGNNVSILHHVTLG-------GT 204 Query: 272 GIAGSTY---IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIG 328 G A IGD VLIG I G +KIG+ +I + S VL D+P G PAR +G Sbjct: 205 GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTTAVGNPARLVG 264 Score = 32.7 bits (74), Expect = 0.15 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 23/96 (23%) Query: 107 AMHMEASS-FEGGISPQAFLGEDVKIE--DGVVIAPMAVVYPGVEI-------------- 149 A+H S F I P A +G+ + + GVVI AV+ V I Sbjct: 150 ALHSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACG 209 Query: 150 GRKTYVGPGSVIGAG------VRIGRNCSIGAGSSI 179 R +G G +IGAG V+IG IGAGS + Sbjct: 210 DRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVV 245 >gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 446 Score = 52.2 bits (126), Expect = 2e-07 Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 30/192 (15%) Query: 132 EDGV-VIAPMAVVYP-GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189 GV +IAP V + IGR + P V G GV + I A +S L G V Sbjct: 252 LAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHA----FSHLEGAHV- 306 Query: 190 LHSGVRIGNDGFGYAR---GVSDIHKIVHIGRVIIQDKVEIGANSAIDRGT-IDDTIIGE 245 G +G YAR G +++ + +G + ++G + ++ T I D IG Sbjct: 307 -GEGAEVGP----YARLRPG-AELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGA 360 Query: 246 NTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKIGDNVQIA 304 +IG G I + G T IG IG + + IGD IA Sbjct: 361 GA------------NIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIA 408 Query: 305 SKSGVLKDIPAG 316 S S + +D+P Sbjct: 409 SGSVITEDVPDD 420 >gnl|CDD|178340 PLN02739, PLN02739, serine acetyltransferase. Length = 355 Score = 51.2 bits (122), Expect = 4e-07 Identities = 41/125 (32%), Positives = 55/125 (44%), Gaps = 27/125 (21%) Query: 209 DIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIV 268 DIH IG+ I+ +D GT +IGE I ++V I H V +G Sbjct: 207 DIHPAARIGKGIL-----------LDHGT--GVVIGETAVIGDRVSILHGVTLG------ 247 Query: 269 SQVGIAGST-----YIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMP 323 G T IGD L+G I G + IG +A+ S VLKD+P+ G P Sbjct: 248 ---GTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNP 304 Query: 324 ARPIG 328 A+ IG Sbjct: 305 AKLIG 309 Score = 35.8 bits (82), Expect = 0.015 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 17/93 (18%) Query: 119 ISPQAFLGEDVKIE--DGVVIAPMAVVYPGVEI---------GRKT-----YVGPGSVIG 162 I P A +G+ + ++ GVVI AV+ V I G++T +G G+++G Sbjct: 208 IHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLG 267 Query: 163 AGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGV 194 A V I N SIGAG+ + + SL+ V HS V Sbjct: 268 ACVTILGNISIGAGAMVAAGSLVLKDVPSHSMV 300 >gnl|CDD|130240 TIGR01172, cysE, serine O-acetyltransferase. Cysteine biosynthesis. Length = 162 Score = 50.8 bits (122), Expect = 5e-07 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 26/125 (20%) Query: 213 IVHIGRVI----IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIV 268 + + RV+ I IG ID GT +IGE I + V I H V +G Sbjct: 52 LSNFIRVLTGVDIHPGARIGRGVFIDHGT--GVVIGETAVIGDDVTIYHGVTLG------ 103 Query: 269 SQVGIAGSTY--------IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYG 320 G+ +G+ V+IG + G +++G+N +I + S VLKD+P G Sbjct: 104 ------GTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVV 157 Query: 321 GMPAR 325 G+PAR Sbjct: 158 GVPAR 162 Score = 36.1 bits (84), Expect = 0.014 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 20/89 (22%) Query: 119 ISPQAFLGEDVKIED--GVVIAPMAVV------YPGVEIG--------RKTYVGPGSVIG 162 I P A +G V I+ GVVI AV+ Y GV +G R VG G +IG Sbjct: 64 IHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIG 123 Query: 163 AGVRIGRNCSIGAGSSIYSSLIGNSVILH 191 AG ++ N +G + I + NSV+L Sbjct: 124 AGAKVLGNIEVGENAKIGA----NSVVLK 148 >gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 482 Score = 50.7 bits (122), Expect = 6e-07 Identities = 41/199 (20%), Positives = 78/199 (39%), Gaps = 40/199 (20%) Query: 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI- 189 I+ V I V++PG ++ +T +G +V+G + + ++G G+S+ + S I Sbjct: 268 IDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTL-TDVTVGEGASVVRTHGSESEIG 326 Query: 190 ----------LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGT-I 238 L G +G +G +G + IG + + T + Sbjct: 327 AGATVGPFTYLRPGTVLGEEG--------------KLGAFVETKNATIGRGTKVPHLTYV 372 Query: 239 DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKI 297 D IGE++ +IG + V+ G+ T IG +V G + + Sbjct: 373 GDADIGEHS------------NIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTV 420 Query: 298 GDNVQIASKSGVLKDIPAG 316 GD + + + +D+P G Sbjct: 421 GDGAYTGAGTVIREDVPPG 439 >gnl|CDD|184645 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 430 Score = 50.4 bits (121), Expect = 7e-07 Identities = 49/160 (30%), Positives = 66/160 (41%), Gaps = 20/160 (12%) Query: 159 SVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIG 217 + GVRI I S I + S+I S+I +S V + R S+I K HIG Sbjct: 266 CELEEGVRILGKSKI-ENSHIKAHSVIEESIIENSDV----GPLAHIRPKSEI-KNTHIG 319 Query: 218 RVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG-S 276 + ++ A + D I E T +IG G I + G Sbjct: 320 NFVETKNAKLNGVKAGHLSYLGDCEIDEGT------------NIGAGTITCNYDGKKKHK 367 Query: 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAG 316 T IG NV IG + + I DNV IA+ S V KD+P G Sbjct: 368 TIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKG 407 >gnl|CDD|172834 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 481 Score = 48.4 bits (115), Expect = 3e-06 Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 21/180 (11%) Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL--HS---GVRIGNDG- 200 V +GR + PG ++ R+ +IGA S + S++ ++ HS G +G Sbjct: 271 VTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSD 330 Query: 201 ---FGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGH 257 F R + + + VHIG ++ K N+ +D G + + V IG Sbjct: 331 VGPFARLRPGTVLGEGVHIGN-FVETK-----NARLDAG-----VKAGHLAYLGDVTIGA 379 Query: 258 NVHIGCGCIIVSQVGI-AGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAG 316 ++G G I+ + G+ + +G V IG + +GD IA+ S V D+P G Sbjct: 380 ETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVHDDVPEG 439 >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional. Length = 380 Score = 47.6 bits (114), Expect = 4e-06 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 36/138 (26%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178 P ++ E+ K+++ + + VVY VE SV+ GV++G Sbjct: 279 NLPPQYIAENAKVKNSL-VVEGCVVYGTVE---------HSVLFQGVQVGEG-------- 320 Query: 179 IYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238 S++ +SVI+ G +IG + V I R II + IG I G Sbjct: 321 ---SVVKDSVIM-PGAKIGEN--------------VVIERAIIGENAVIGDGVIIGGGKE 362 Query: 239 DDTIIGENTKIDNQVQIG 256 T+IGEN I IG Sbjct: 363 VITVIGENEVIGVGTVIG 380 >gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 456 Score = 45.4 bits (108), Expect = 2e-05 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 21/168 (12%) Query: 160 VIGAGVRIGRNCSIGAGSSIYSSLIGNSVILH-----SGVRIGNDG----FGYARGVSDI 210 +I V +G IGAG + + +IG+ + +G F R +++ Sbjct: 279 IIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAEL 338 Query: 211 HKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ 270 + H+G + K +G S T +G+ +IG NV+IG G I + Sbjct: 339 AEGAHVGNFVEMKKARLGKGSKAGH----LTYLGD-------AEIGDNVNIGAGTITCNY 387 Query: 271 VGIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQ 317 G T IGD+V +G + + +G I + + V +D+ + Sbjct: 388 DGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENE 435 Score = 40.8 bits (96), Expect = 6e-04 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 10/54 (18%) Query: 235 RGTID---DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLI 285 RGT+ D I N I+ V +G+ V IG GC++ + V IGD+ I Sbjct: 263 RGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCV-------IGDDCEI 309 Score = 31.9 bits (73), Expect = 0.28 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 17/74 (22%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVG-----PGSVIGAGVR------- 166 ISP + + ED + I P A + PG E+ +VG + +G G + Sbjct: 309 ISPYSVV-EDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL 367 Query: 167 ----IGRNCSIGAG 176 IG N +IGAG Sbjct: 368 GDAEIGDNVNIGAG 381 Score = 28.5 bits (64), Expect = 2.9 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Query: 262 GCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK---IGDNVQIASKSGVLKD 312 G I + V I G+ +G+ V IG C LK IGD+ +I+ S V++D Sbjct: 269 GRDVEIDTNVIIEGNVTLGNRVKIGAGC----VLKNCVIGDDCEISPYS-VVED 317 >gnl|CDD|181930 PRK09527, lacA, galactoside O-acetyltransferase; Reviewed. Length = 203 Score = 41.5 bits (97), Expect = 3e-04 Identities = 36/102 (35%), Positives = 45/102 (44%), Gaps = 18/102 (17%) Query: 238 IDD--TIIGENTKIDNQVQI---GHNVHIGCGCIIVSQVGIAGSTY-----IGDNVLIGG 287 +DD IG+N I V + GH VH ++ G Y IG+NV IG Sbjct: 91 VDDYTVTIGDNVLIAPNVTLSVTGHPVHH--------ELRKNGEMYSFPITIGNNVWIGS 142 Query: 288 QCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329 I + IGDN I + S V KDIP G+P R I E Sbjct: 143 HVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIRE 184 Score = 28.8 bits (64), Expect = 1.9 Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161 + I + V I V+ PGV IG + +G GSV+ Sbjct: 132 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVV 164 >gnl|CDD|162818 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695 Score = 40.9 bits (96), Expect = 5e-04 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 118 GISPQAFLGED-------VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRN 170 G Q L ED V I DG + P A+V GV +G + +GP S++ G + Sbjct: 628 GSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPA- 686 Query: 171 CSIGAGSSI 179 + G+ Sbjct: 687 HTRWRGNPA 695 Score = 38.6 bits (90), Expect = 0.002 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 14/110 (12%) Query: 225 VEIGANSAIDRGTIDDT---IIGENTKIDNQVQI-GHNVHIGCGCIIVSQVGIAGSTYIG 280 +IG I T IG T + +V + G+ G ++ G +G Sbjct: 113 AKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERG-------RLHT-GPVTLG 164 Query: 281 DNVLIGGQCGIAGYLKIGDNVQIASKSGVLKD--IPAGQQYGGMPARPIG 328 + IG + + IGD Q+ S + IP G+++ G PA+ G Sbjct: 165 RDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTG 214 Score = 37.0 bits (86), Expect = 0.007 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 10/76 (13%) Query: 164 GVRIGRNCSIGAGSSIYSSL--IGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVII 221 G +IG+ IG+ + + L IG I+ V + R +H G V + Sbjct: 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLG-----YRAERGR---LHTGPVTL 163 Query: 222 QDKVEIGANSAIDRGT 237 IG S +D T Sbjct: 164 GRDAFIGTRSTLDIDT 179 Score = 32.0 bits (73), Expect = 0.23 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 111 EASSFEGGISPQAFLGEDVKIEDGVVIAPM-----AVVYPGVEIGRKTYVGPGSVIGAGV 165 E SS + + +GE+ I DG+++ IGR++++G G Sbjct: 361 EISSAQHEVPDLTDIGEETFIADGLLMGNARLSGGWFRLGRTRIGRRSFLGNSGYYPPGA 420 Query: 166 RIGRNCSIGAGSSI 179 + G N +G S Sbjct: 421 KTGDNVLLGVLSMT 434 Score = 30.5 bits (69), Expect = 0.76 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 125 LGEDVKIEDGVVIAPMAV----VYPG-VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI 179 +G + V++ ++ G V +GR ++G S + IG +G GS++ Sbjct: 134 IGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSAL 193 >gnl|CDD|183330 PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional. Length = 272 Score = 40.2 bits (95), Expect = 7e-04 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 20/64 (31%) Query: 243 IGENTKIDNQ------VQIGHNVHIGCGCIIVSQVGI--------AGSTYIGDNVLIGGQ 288 + E T +D QIG NVH+ G VGI A I DN IG + Sbjct: 135 VDEGTMVDTWATVGSCAQIGKNVHLSGG------VGIGGVLEPLQANPVIIEDNCFIGAR 188 Query: 289 CGIA 292 + Sbjct: 189 SEVV 192 Score = 35.6 bits (83), Expect = 0.021 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 24/85 (28%) Query: 225 VEIGANSAIDRGTIDDTI--------IGENTKIDNQVQIG--------------HNVHIG 262 V IGA +D GT+ DT IG+N + V IG N IG Sbjct: 129 VNIGAY--VDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIG 186 Query: 263 CGCIIVSQVGIAGSTYIGDNVLIGG 287 +V V + + +G V +G Sbjct: 187 ARSEVVEGVIVEEGSVLGMGVFLGQ 211 Score = 34.4 bits (80), Expect = 0.042 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 45/132 (34%) Query: 133 DGVVIAPMAVVYPG-VEIGRKTYVGPGSVI------GAGVRIGRNCSIGAGSSIYSSLIG 185 G IAP V+ P V IG YV G+++ G+ +IG+N + G Sbjct: 114 RGAYIAPNVVLMPSYVNIG--AYVDEGTMVDTWATVGSCAQIGKNVHLSGG--------- 162 Query: 186 NSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI------- 238 V IG GV + + VII+D IGA S + G I Sbjct: 163 --------VGIG--------GVLEP---LQANPVIIEDNCFIGARSEVVEGVIVEEGSVL 203 Query: 239 -DDTIIGENTKI 249 +G++TKI Sbjct: 204 GMGVFLGQSTKI 215 Score = 30.2 bits (69), Expect = 0.81 Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRI 167 V IED I + V GV + + +G G +G +I Sbjct: 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKI 215 Score = 27.8 bits (63), Expect = 4.0 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 8/39 (20%) Query: 279 IGDNVLIGGQCGIAGYLK--------IGDNVQIASKSGV 309 IG NV + G GI G L+ I DN I ++S V Sbjct: 153 IGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEV 191 >gnl|CDD|179140 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional. Length = 407 Score = 38.3 bits (90), Expect = 0.003 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 18/96 (18%) Query: 157 PGSVIGAGVRIGR--NCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIV 214 P + G R+G + + AGS I + + NSV L V + + Sbjct: 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSV-LSPNVVVESG--------------A 344 Query: 215 HIGRVIIQDKVEIGANSAIDRGTID-DTIIGENTKI 249 + ++ D V IG + + R +D + ++ I Sbjct: 345 EVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATI 380 >gnl|CDD|182987 PRK11132, cysE, serine acetyltransferase; Provisional. Length = 273 Score = 36.6 bits (85), Expect = 0.010 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 29/126 (23%) Query: 209 DIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIV 268 DIH IGR I+ +D T +IGE I+N V I +V +G Sbjct: 143 DIHPAAKIGRGIM-----------LDHAT--GIVIGETAVIENDVSILQSVTLGG----- 184 Query: 269 SQVGIAGSTY------IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGM 322 G T I + V+IG I G +++G +I + S VL+ +P G+ Sbjct: 185 -----TGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGV 239 Query: 323 PARPIG 328 PAR +G Sbjct: 240 PARIVG 245 Score = 28.9 bits (65), Expect = 2.2 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 20/95 (21%) Query: 114 SFEGGISPQAFLGEDVKIE--DGVVIAPMAVVYPGVEI--------------GRKTYVGP 157 +F+ I P A +G + ++ G+VI AV+ V I R + Sbjct: 139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIRE 198 Query: 158 GSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHS 192 G +IGAG +I N +G G+ I + SV+L Sbjct: 199 GVMIGAGAKILGNIEVGRGAKIGA----GSVVLQP 229 >gnl|CDD|162696 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. Length = 361 Score = 36.5 bits (85), Expect = 0.012 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 14/78 (17%) Query: 227 IGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIG 286 + I T+ +++G +I + + +I+ VGI I N +I Sbjct: 297 VSEGCIISGATVSHSVLGIRVRIGSGSTVED-------SVIMGDVGIGRGAVI-RNAIID 348 Query: 287 GQCGIAGYLKIGDNVQIA 304 +IG+ V I Sbjct: 349 KNV------RIGEGVVIG 360 Score = 35.3 bits (82), Expect = 0.024 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 11/51 (21%) Query: 159 SVIGAGVRIGRNCS-----------IGAGSSIYSSLIGNSVILHSGVRIGN 198 SV+G VRIG + IG G+ I +++I +V + GV IGN Sbjct: 311 SVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 >gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. Length = 204 Score = 35.9 bits (83), Expect = 0.014 Identities = 40/190 (21%), Positives = 62/190 (32%), Gaps = 52/190 (27%) Query: 155 VGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIV 214 + P + + +G + IG L + + Y DI Sbjct: 5 LSPEPTLHPTAEL-TESKLGR-----YTEIGERTRLRE---VALGDYSYVMRDCDI-IYT 54 Query: 215 HIGR-VIIQDKVEIGA-NSAIDRGTI---------------DDTIIGENTKIDNQVQIGH 257 IG+ I V I A N ++R T+ DD + +V IGH Sbjct: 55 TIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDDADFFAWRR-AKRVTIGH 113 Query: 258 NVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQ 317 +V IG G +I+ V IG+ IA+ + V KD+ Sbjct: 114 DVWIGHGAVILPGV------------------------TIGNGAVIAAGAVVTKDVAPYT 149 Query: 318 QYGGMPARPI 327 G+PA+ I Sbjct: 150 IVAGVPAKLI 159 Score = 34.0 bits (78), Expect = 0.063 Identities = 14/31 (45%), Positives = 18/31 (58%) Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177 V IG ++G G+VI GV IG I AG+ Sbjct: 109 VTIGHDVWIGHGAVILPGVTIGNGAVIAAGA 139 Score = 30.5 bits (69), Expect = 0.61 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%) Query: 111 EASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161 +A F + + +G DV I G AV+ PGV IG + G+V+ Sbjct: 97 DADFFAWRRAKRVTIGHDVWIGHG------AVILPGVTIGNGAVIAAGAVV 141 >gnl|CDD|137467 PRK09677, PRK09677, putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional. Length = 192 Score = 35.6 bits (82), Expect = 0.022 Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189 V IG++ ++G I GV IG C +GA S + S+ N+VI Sbjct: 131 VVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVI 173 Score = 35.2 bits (81), Expect = 0.023 Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 5/115 (4%) Query: 219 VIIQDKVEIGANSAIDRGTIDDTIIGENTKID--NQVQIGHNVHIGCGCIIVSQVGIAGS 276 V + D V I +I G DT+I I N H+ + + S Sbjct: 72 VQVNDYVHIACIESITIG--RDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESS 129 Query: 277 TY-IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEY 330 IG V IG I + IG+ + + S V K IP G PA+ I +Y Sbjct: 130 AVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKKY 184 >gnl|CDD|177933 PLN02296, PLN02296, carbonate dehydratase. Length = 269 Score = 32.4 bits (74), Expect = 0.19 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 45/143 (31%) Query: 220 IIQDKVEIGANSAI-----DRGTIDDTIIGENTKI-DNQVQIGHNVHIGCGCIIVSQVGI 273 +I D V++G S+I RG ++ +G T I DN + VH V++ + Sbjct: 67 VIGD-VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSL-----VH-------VAKTNL 113 Query: 274 AGS---TYIGDNVLIGGQ-----C--------GIAGYLKIGDNVQ----IASKSGVLKD- 312 +G T IGDNV IG C G+ L G V+ +A+ + V ++ Sbjct: 114 SGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNT 173 Query: 313 -IPAGQQYGGMPARPIGEYLRHM 334 IP+G+ + G PA+ +LR + Sbjct: 174 RIPSGEVWAGNPAK----FLRKL 192 >gnl|CDD|116569 pfam07959, Fucokinase, L-fucokinase. In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase. Length = 414 Score = 32.1 bits (73), Expect = 0.21 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 147 VEIGRKTYVGPGSVI-----GAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGV 194 + VGPGSV+ G VRIG NC I +G I S ++ L V Sbjct: 285 SLLDSGVSVGPGSVVEYSHLGGPVRIGSNC-IVSGVDILHSEALPALELPDFV 336 >gnl|CDD|182295 PRK10191, PRK10191, putative acyl transferase; Provisional. Length = 146 Score = 31.8 bits (72), Expect = 0.26 Identities = 17/47 (36%), Positives = 24/47 (51%) Query: 279 IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPAR 325 IG+ V +G I G + IG+NV + + S VL +P G AR Sbjct: 95 IGNGVELGANVIILGDITIGNNVTVGAGSVVLDSVPDNALVVGEKAR 141 Score = 31.8 bits (72), Expect = 0.31 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVE-IGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177 I+ G+D I GV I IG +G +I + IG N ++GAGS Sbjct: 64 INKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGS 123 Query: 178 SIYSSLIGNSVILHSGVRI 196 + S+ N++++ R+ Sbjct: 124 VVLDSVPDNALVVGEKARV 142 >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional. Length = 429 Score = 31.8 bits (73), Expect = 0.27 Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 33/106 (31%) Query: 173 IGAGSSIYSSLIGNSVILHSGVR--IGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGAN 230 I G I + I +SV+ G+R I + I+D + +GA+ Sbjct: 311 IAEGCIIKNCSIHHSVL---GIRSRIESG-------------------CTIEDTLVMGAD 348 Query: 231 -----SAIDRGTIDDTI---IGENTKIDNQVQIGHNVHIGCGCIIV 268 + + IGE T I + I N IG IV Sbjct: 349 FYESSEEREELRKEGKPPLGIGEGTTIKRAI-IDKNARIGNNVRIV 393 Score = 27.2 bits (61), Expect = 6.4 Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 25/94 (26%) Query: 159 SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGR 218 SV+G RI C+I + ++G S R G +G Sbjct: 325 SVLGIRSRIESGCTI-----EDTLVMGADFYESSEEREELRKEG----------KPPLG- 368 Query: 219 VIIQDKVEIGANSAIDRGTID-DTIIGENTKIDN 251 IG + I R ID + IG N +I N Sbjct: 369 --------IGEGTTIKRAIIDKNARIGNNVRIVN 394 Score = 27.2 bits (61), Expect = 6.5 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%) Query: 145 PGVEIGRKTYVGPGSVIGAGVRIGRNCSI 173 P + IG T + ++I RIG N I Sbjct: 365 PPLGIGEGTTI-KRAIIDKNARIGNNVRI 392 >gnl|CDD|132575 TIGR03536, DapD_gpp, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. Length = 341 Score = 31.7 bits (72), Expect = 0.30 Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 20/93 (21%) Query: 134 GVVIAPMAVVYPGVEIGRKTYV-------------GPGSV---IGAGVRIGRNCSIGAGS 177 GV IA A V G +G T V GP V I AGV +G+ +G G Sbjct: 178 GVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGC 237 Query: 178 SIYSSLIGNSVILHS---GVRIG-NDGFGYARG 206 S +L G I+ S G +G N G G G Sbjct: 238 STMGTLSGGGNIVISVGEGCLLGANAGIGIPLG 270 >gnl|CDD|130038 TIGR00965, dapD, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). Length = 269 Score = 31.4 bits (71), Expect = 0.36 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 20/82 (24%) Query: 219 VIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG--- 275 V++ V IGA +D GT+ DT + + QIG NVH+ G VGI G Sbjct: 120 VLMPSYVNIGA--YVDEGTMVDTW----ATVGSCAQIGKNVHLSGG------VGIGGVLE 167 Query: 276 -----STYIGDNVLIGGQCGIA 292 T I DN IG + I Sbjct: 168 PLQANPTIIEDNCFIGARSEIV 189 Score = 31.0 bits (70), Expect = 0.50 Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 21/132 (15%) Query: 127 EDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIG 185 E + G + P A V G I + + P S + G + + +++ S + IG Sbjct: 93 EARFKKAGFRVVPGAAVRQGAFIAKNVVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIG 151 Query: 186 NSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD----- 240 +V L GV IG + + + II+D IGA S I G I + Sbjct: 152 KNVHLSGGVGIGG-----------VLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVI 200 Query: 241 ---TIIGENTKI 249 IG++TKI Sbjct: 201 SMGVFIGQSTKI 212 >gnl|CDD|179502 PRK02925, PRK02925, glucuronate isomerase; Reviewed. Length = 466 Score = 30.9 bits (71), Expect = 0.47 Identities = 8/23 (34%), Positives = 11/23 (47%) Query: 136 VIAPMAVVYPGVEIGRKTYVGPG 158 +A MA + G+ I K G G Sbjct: 356 ELATMAGNFQGLGIPGKMQFGAG 378 >gnl|CDD|177884 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase. Length = 436 Score = 30.2 bits (69), Expect = 0.80 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 27/103 (26%) Query: 231 SAIDRGTIDDTIIGE-----NTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTY------- 278 S I+ I D+II KI++ V +G IG G I V + G+ Y Sbjct: 306 SKIEDCRITDSIISHGCFLRECKIEHSV-VGLRSRIGEGVEIEDTV-MMGADYYETEEEI 363 Query: 279 ------------IGDNVLIGGQCGIAGYLKIGDNVQIASKSGV 309 IG+N I I +IG NV I +K GV Sbjct: 364 ASLLAEGKVPIGIGENTKIRN-AIIDKNARIGKNVVIINKDGV 405 >gnl|CDD|162697 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. Length = 369 Score = 29.7 bits (67), Expect = 1.1 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Query: 176 GSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDR 235 S + +SL+ N I+ V N RGV + K I II + IG + ++ Sbjct: 284 NSKVENSLVANGCIIEGKVE--NSILS--RGVH-VGKDALIKNCIIMQRTVIGEGAHLEN 338 Query: 236 GTID-DTIIGENTKI 249 ID D +I N KI Sbjct: 339 VIIDKDVVIEPNVKI 353 >gnl|CDD|162250 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase. Length = 353 Score = 29.7 bits (67), Expect = 1.3 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 14/83 (16%) Query: 116 EGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGA 175 E I + +GE KI + V+ P AV+ I +Y+GP + SIG Sbjct: 248 ESKIRGRVVVGEGAKIVNSVIRGP-AVIGEDCIIEN-SYIGPYT------------SIGE 293 Query: 176 GSSIYSSLIGNSVILHSGVRIGN 198 G I + + +S++L V G Sbjct: 294 GVVIRDAEVEHSIVLDESVIEGV 316 >gnl|CDD|185150 PRK15235, PRK15235, outer membrane fimbrial usher protein SefC; Provisional. Length = 814 Score = 28.9 bits (64), Expect = 1.9 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 152 KTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIH 211 KT VG ++I RI R SL N ++ S +G DG Y G+S + Sbjct: 723 KTSVGTNALI----RITRTNGKPLALGTVLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQ 778 Query: 212 KIV 214 K++ Sbjct: 779 KLI 781 >gnl|CDD|178091 PLN02472, PLN02472, uncharacterized protein. Length = 246 Score = 28.8 bits (64), Expect = 2.3 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 36/136 (26%) Query: 213 IVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCII----V 268 +V G+V + D + N A+ RG + N++ +G ++ C++ Sbjct: 72 VVLAGQVTVWDGASVW-NGAVLRGDL------------NKITVGFCSNVQERCVLHAAWN 118 Query: 269 SQVGIAGSTYIGDNVLIGGQC-------------GIAGYLKIGDNVQIAS--KSGVL--- 310 S G+ T I V IG G L G V+ S ++G + Sbjct: 119 SPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPP 178 Query: 311 -KDIPAGQQYGGMPAR 325 + IP G+ + G PAR Sbjct: 179 GRRIPTGELWAGNPAR 194 >gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. Length = 192 Score = 27.2 bits (60), Expect = 7.3 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 124 FLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177 F G+D +E+ + A+++ G +GR VG +V+ G IG N + A + Sbjct: 65 FPGQDTVVEENGHVGHGAILH-GCIVGRNALVGMNAVVMDGAVIGENSIVAASA 117 >gnl|CDD|179099 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional. Length = 425 Score = 27.1 bits (61), Expect = 7.5 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 34/99 (34%) Query: 159 SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGR 218 S++ G I +G+ + S++ + V ++S + + Sbjct: 328 SLVSGGC-------IISGAVVRRSVLFSRVRVNSFSNVED-------------------- 360 Query: 219 VIIQDKVEIGANS-----AIDRGTI--DDTIIGENTKID 250 ++ V +G + IDRG + + +IGE+ + D Sbjct: 361 SVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGEDPEED 399 >gnl|CDD|163036 TIGR02827, RNR_anaer_Bdell, anaerobic ribonucleoside-triphosphate reductase. Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons. Length = 586 Score = 26.7 bits (59), Expect = 8.8 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 172 SIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANS 231 S+GAG S+ +VI + R+ D A V IHK R ++++ + G Sbjct: 313 SLGAGGVATGSI---NVITINMNRLVQDSRDLAHEVEKIHKYQVAYRELMKEYLAAGLLP 369 Query: 232 AIDRGTI 238 D G I Sbjct: 370 LYDAGFI 376 >gnl|CDD|181016 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated. Length = 588 Score = 26.9 bits (60), Expect = 9.1 Identities = 15/63 (23%), Positives = 20/63 (31%) Query: 14 ALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICS 73 AL+ +S L E A Y+ R+ L I+K I S Sbjct: 347 ALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALREIQKALPEDAIVS 406 Query: 74 QDI 76 DI Sbjct: 407 TDI 409 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.140 0.407 Gapped Lambda K H 0.267 0.0844 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,693,179 Number of extensions: 378681 Number of successful extensions: 1251 Number of sequences better than 10.0: 1 Number of HSP's gapped: 785 Number of HSP's successfully gapped: 120 Length of query: 347 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 253 Effective length of database: 3,963,321 Effective search space: 1002720213 Effective search space used: 1002720213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (25.9 bits)